Query 004470
Match_columns 751
No_of_seqs 876 out of 3932
Neff 10.5
Searched_HMMs 46136
Date Thu Mar 28 23:56:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004470.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/004470hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03077 Protein ECB2; Provisi 100.0 7.1E-74 1.5E-78 666.8 70.6 615 108-744 64-724 (857)
2 PLN03218 maturation of RBCL 1; 100.0 1.1E-70 2.4E-75 625.7 71.2 542 187-747 372-916 (1060)
3 PLN03077 Protein ECB2; Provisi 100.0 1.1E-71 2.5E-76 648.3 64.6 589 126-737 48-651 (857)
4 PLN03218 maturation of RBCL 1; 100.0 1.1E-70 2.5E-75 625.6 70.6 547 143-712 368-916 (1060)
5 PLN03081 pentatricopeptide (PP 100.0 1.8E-63 3.8E-68 565.9 50.5 511 184-712 86-611 (697)
6 PLN03081 pentatricopeptide (PP 100.0 9.2E-63 2E-67 560.1 52.8 473 255-743 86-560 (697)
7 TIGR02917 PEP_TPR_lipo putativ 100.0 6.1E-39 1.3E-43 382.5 80.5 624 98-739 264-899 (899)
8 TIGR02917 PEP_TPR_lipo putativ 100.0 7.6E-38 1.7E-42 373.1 81.3 621 105-743 237-869 (899)
9 PRK11447 cellulose synthase su 100.0 4.9E-29 1.1E-33 297.5 76.0 614 106-740 39-740 (1157)
10 PRK11447 cellulose synthase su 100.0 2.6E-27 5.7E-32 282.8 73.4 577 128-742 27-702 (1157)
11 PRK09782 bacteriophage N4 rece 100.0 3.1E-25 6.6E-30 252.5 72.3 592 98-743 47-709 (987)
12 PRK09782 bacteriophage N4 rece 100.0 1.1E-22 2.3E-27 231.9 68.2 556 130-743 45-675 (987)
13 KOG2002 TPR-containing nuclear 100.0 3.4E-22 7.4E-27 212.2 58.6 598 111-741 146-799 (1018)
14 KOG2002 TPR-containing nuclear 99.9 5.4E-21 1.2E-25 203.2 56.8 550 182-745 161-750 (1018)
15 KOG4626 O-linked N-acetylgluco 99.9 4.6E-22 9.9E-27 200.4 41.6 445 259-721 51-500 (966)
16 KOG4626 O-linked N-acetylgluco 99.9 1.5E-21 3.2E-26 196.7 42.3 446 130-615 49-499 (966)
17 TIGR00990 3a0801s09 mitochondr 99.9 2.4E-19 5.2E-24 201.5 53.9 433 256-705 127-571 (615)
18 TIGR00990 3a0801s09 mitochondr 99.9 8.5E-19 1.8E-23 197.1 54.5 427 228-671 134-572 (615)
19 PRK11788 tetratricopeptide rep 99.9 2.6E-20 5.6E-25 198.9 35.7 306 188-501 38-353 (389)
20 PRK11788 tetratricopeptide rep 99.9 4.9E-20 1.1E-24 196.7 37.3 298 372-676 46-353 (389)
21 PRK15174 Vi polysaccharide exp 99.9 2.7E-18 5.9E-23 192.1 47.8 336 130-496 43-382 (656)
22 KOG2076 RNA polymerase III tra 99.9 4.7E-16 1E-20 165.1 59.1 586 129-742 139-851 (895)
23 PRK15174 Vi polysaccharide exp 99.9 6.3E-18 1.4E-22 189.3 48.0 336 186-531 43-382 (656)
24 PRK10049 pgaA outer membrane p 99.9 8.9E-18 1.9E-22 192.2 48.7 404 290-704 14-455 (765)
25 KOG0495 HAT repeat protein [RN 99.9 4.5E-15 9.9E-20 151.4 61.9 604 110-743 266-883 (913)
26 PRK10049 pgaA outer membrane p 99.9 9.2E-18 2E-22 192.1 47.5 370 185-565 49-456 (765)
27 KOG2076 RNA polymerase III tra 99.9 6.8E-16 1.5E-20 163.8 56.3 605 105-736 149-891 (895)
28 PRK14574 hmsH outer membrane p 99.9 1.8E-16 3.9E-21 177.6 55.3 442 125-600 30-513 (822)
29 PRK14574 hmsH outer membrane p 99.9 3.5E-16 7.6E-21 175.3 53.9 430 259-705 38-513 (822)
30 KOG4422 Uncharacterized conser 99.8 8.8E-15 1.9E-19 142.2 43.2 323 188-531 119-463 (625)
31 KOG0495 HAT repeat protein [RN 99.8 3.5E-12 7.5E-17 130.8 62.3 573 103-705 293-880 (913)
32 KOG2003 TPR repeat-containing 99.8 2.4E-15 5.1E-20 146.9 34.9 485 185-690 201-708 (840)
33 KOG4422 Uncharacterized conser 99.8 2.1E-13 4.5E-18 132.8 43.4 445 222-707 118-592 (625)
34 KOG2003 TPR repeat-containing 99.8 4.3E-15 9.3E-20 145.1 32.1 465 261-736 206-718 (840)
35 KOG1915 Cell cycle control pro 99.7 5.9E-12 1.3E-16 124.4 49.1 457 233-704 85-584 (677)
36 KOG1915 Cell cycle control pro 99.7 7.4E-12 1.6E-16 123.7 49.5 471 257-741 74-586 (677)
37 KOG1156 N-terminal acetyltrans 99.7 2.5E-10 5.5E-15 117.8 53.7 586 109-740 21-688 (700)
38 TIGR00540 hemY_coli hemY prote 99.7 4.1E-13 8.9E-18 142.8 35.5 293 443-741 96-400 (409)
39 KOG1155 Anaphase-promoting com 99.7 1.4E-11 3E-16 121.8 41.8 162 539-704 333-494 (559)
40 PRK10747 putative protoheme IX 99.6 8.4E-13 1.8E-17 139.6 36.1 292 133-458 88-388 (398)
41 PRK10747 putative protoheme IX 99.6 1.2E-12 2.6E-17 138.4 36.9 284 444-740 97-390 (398)
42 KOG0547 Translocase of outer m 99.6 1.7E-12 3.6E-17 128.9 34.4 220 477-704 337-565 (606)
43 KOG0547 Translocase of outer m 99.6 1.3E-12 2.8E-17 129.7 33.1 219 442-669 337-565 (606)
44 PF13429 TPR_15: Tetratricopep 99.6 1.9E-15 4.2E-20 152.6 12.5 262 471-740 13-277 (280)
45 TIGR00540 hemY_coli hemY prote 99.6 1.6E-12 3.4E-17 138.4 34.2 301 133-492 88-396 (409)
46 KOG1155 Anaphase-promoting com 99.6 1E-10 2.3E-15 115.7 40.8 309 369-687 235-551 (559)
47 KOG1173 Anaphase-promoting com 99.6 2.5E-11 5.5E-16 123.1 36.9 91 220-315 16-106 (611)
48 COG2956 Predicted N-acetylgluc 99.6 8.2E-12 1.8E-16 117.9 29.9 292 196-495 46-347 (389)
49 KOG1156 N-terminal acetyltrans 99.6 6.7E-10 1.4E-14 114.7 46.3 453 140-633 18-509 (700)
50 PF13429 TPR_15: Tetratricopep 99.6 2E-14 4.4E-19 145.2 12.6 261 436-704 13-276 (280)
51 KOG1173 Anaphase-promoting com 99.6 1.9E-10 4.2E-15 116.8 40.0 503 185-718 16-529 (611)
52 COG3071 HemY Uncharacterized e 99.6 4.9E-11 1.1E-15 116.5 34.5 299 409-745 97-395 (400)
53 KOG1126 DNA-binding cell divis 99.5 2.8E-12 6E-17 132.8 25.9 284 411-704 334-619 (638)
54 KOG4162 Predicted calmodulin-b 99.5 3.4E-09 7.3E-14 111.9 48.5 495 228-743 234-786 (799)
55 COG2956 Predicted N-acetylgluc 99.5 4.3E-11 9.3E-16 113.1 31.0 306 94-424 34-346 (389)
56 KOG1126 DNA-binding cell divis 99.5 4.1E-12 8.9E-17 131.6 25.6 289 446-745 334-625 (638)
57 KOG3785 Uncharacterized conser 99.5 6.5E-10 1.4E-14 106.2 38.1 491 192-726 29-536 (557)
58 KOG2047 mRNA splicing factor [ 99.5 1E-07 2.2E-12 98.6 59.6 534 182-733 99-716 (835)
59 KOG4318 Bicoid mRNA stability 99.5 1.2E-10 2.6E-15 123.8 36.4 517 186-743 26-597 (1088)
60 COG3071 HemY Uncharacterized e 99.5 4.5E-10 9.7E-15 109.8 34.5 285 375-669 98-389 (400)
61 KOG4318 Bicoid mRNA stability 99.5 1.5E-10 3.2E-15 123.2 33.5 93 644-739 462-556 (1088)
62 KOG2047 mRNA splicing factor [ 99.5 1.3E-07 2.7E-12 97.9 53.4 491 186-693 139-711 (835)
63 KOG3785 Uncharacterized conser 99.5 7.7E-09 1.7E-13 99.0 41.3 485 142-690 35-535 (557)
64 PRK12370 invasion protein regu 99.4 4.7E-11 1E-15 132.0 26.7 258 143-426 275-536 (553)
65 KOG1127 TPR repeat-containing 99.4 1.8E-08 4E-13 108.8 44.3 585 106-741 469-1105(1238)
66 KOG2376 Signal recognition par 99.4 2.1E-08 4.6E-13 102.8 41.2 146 586-735 356-515 (652)
67 TIGR02521 type_IV_pilW type IV 99.4 3.8E-10 8.2E-15 110.9 28.0 201 536-740 31-232 (234)
68 PRK12370 invasion protein regu 99.4 1.4E-10 3.1E-15 128.2 27.4 219 234-461 317-536 (553)
69 KOG0985 Vesicle coat protein c 99.4 2E-07 4.4E-12 100.7 49.2 574 96-701 510-1219(1666)
70 KOG1174 Anaphase-promoting com 99.4 4.9E-08 1.1E-12 95.6 39.9 293 405-706 205-501 (564)
71 PF12569 NARP1: NMDA receptor- 99.4 2.8E-08 6.2E-13 106.1 41.5 295 190-494 9-333 (517)
72 KOG4162 Predicted calmodulin-b 99.4 1.1E-07 2.3E-12 100.8 44.0 434 253-705 320-783 (799)
73 PF12569 NARP1: NMDA receptor- 99.3 5.3E-08 1.1E-12 104.0 41.8 129 433-563 196-332 (517)
74 TIGR02521 type_IV_pilW type IV 99.3 5.6E-10 1.2E-14 109.6 25.3 201 184-389 30-231 (234)
75 KOG1840 Kinesin light chain [C 99.3 1.6E-09 3.6E-14 113.9 28.6 237 503-739 201-478 (508)
76 KOG1174 Anaphase-promoting com 99.3 8.3E-08 1.8E-12 94.1 37.2 294 441-743 206-503 (564)
77 KOG1129 TPR repeat-containing 99.3 1.3E-10 2.7E-15 109.9 16.8 230 189-425 227-458 (478)
78 KOG1129 TPR repeat-containing 99.3 1.1E-09 2.3E-14 103.7 22.7 236 500-741 222-459 (478)
79 PF13041 PPR_2: PPR repeat fam 99.3 1E-11 2.2E-16 87.7 6.6 50 254-303 1-50 (50)
80 KOG3617 WD40 and TPR repeat-co 99.3 7.9E-07 1.7E-11 94.4 43.8 230 184-458 756-994 (1416)
81 KOG1840 Kinesin light chain [C 99.2 1.2E-08 2.6E-13 107.5 30.4 236 469-704 202-478 (508)
82 KOG2376 Signal recognition par 99.2 1.4E-07 3.1E-12 96.9 36.8 155 585-743 321-490 (652)
83 KOG0985 Vesicle coat protein c 99.2 1E-05 2.2E-10 88.1 54.3 361 96-491 329-749 (1666)
84 PF13041 PPR_2: PPR repeat fam 99.2 1.9E-11 4.1E-16 86.3 5.8 50 289-338 1-50 (50)
85 KOG0548 Molecular co-chaperone 99.2 5.2E-08 1.1E-12 99.2 31.5 411 298-741 9-456 (539)
86 KOG1127 TPR repeat-containing 99.2 3.5E-07 7.6E-12 99.2 39.1 539 176-741 483-1068(1238)
87 COG3063 PilF Tfp pilus assembl 99.2 1.5E-08 3.3E-13 92.0 24.3 201 538-742 37-238 (250)
88 KOG0548 Molecular co-chaperone 99.2 2.6E-07 5.7E-12 94.2 35.6 239 468-723 226-472 (539)
89 KOG3617 WD40 and TPR repeat-co 99.2 2.2E-06 4.8E-11 91.1 42.1 58 656-713 1306-1367(1416)
90 PRK11189 lipoprotein NlpI; Pro 99.2 3.4E-08 7.3E-13 100.0 27.8 231 480-720 40-280 (296)
91 KOG0624 dsRNA-activated protei 99.1 2.4E-07 5.1E-12 88.8 30.8 343 117-531 25-371 (504)
92 cd05804 StaR_like StaR_like; a 99.1 2.1E-07 4.5E-12 98.0 34.1 204 182-389 3-214 (355)
93 KOG3616 Selective LIM binding 99.1 6.6E-06 1.4E-10 86.4 42.6 234 187-454 663-905 (1636)
94 KOG3616 Selective LIM binding 99.1 2.8E-06 6E-11 89.2 39.8 434 235-741 545-1025(1636)
95 PRK11189 lipoprotein NlpI; Pro 99.1 3E-08 6.5E-13 100.4 25.6 197 129-356 64-266 (296)
96 PRK04841 transcriptional regul 99.1 9.5E-06 2.1E-10 96.9 50.3 373 367-742 347-762 (903)
97 KOG0624 dsRNA-activated protei 99.1 9.2E-07 2E-11 84.8 32.0 191 511-706 165-371 (504)
98 cd05804 StaR_like StaR_like; a 99.1 9E-07 2E-11 93.2 35.8 305 433-741 8-337 (355)
99 COG3063 PilF Tfp pilus assembl 99.1 4.1E-08 8.8E-13 89.3 21.3 188 108-319 48-235 (250)
100 KOG4340 Uncharacterized conser 99.0 8.1E-07 1.8E-11 83.5 28.2 305 110-456 25-335 (459)
101 KOG2053 Mitochondrial inherita 99.0 7.9E-05 1.7E-09 81.0 45.7 225 141-392 21-257 (932)
102 KOG4340 Uncharacterized conser 99.0 1.5E-06 3.2E-11 81.8 28.3 291 188-491 13-335 (459)
103 PRK04841 transcriptional regul 98.9 9.5E-06 2.1E-10 96.9 39.1 337 370-706 383-761 (903)
104 KOG2053 Mitochondrial inherita 98.9 0.00028 6E-09 76.9 47.8 519 196-738 20-606 (932)
105 KOG1914 mRNA cleavage and poly 98.9 0.0002 4.3E-09 73.6 41.5 186 447-634 309-500 (656)
106 PF04733 Coatomer_E: Coatomer 98.8 1.5E-07 3.2E-12 93.8 17.7 149 545-704 111-264 (290)
107 KOG1125 TPR repeat-containing 98.8 8.5E-07 1.8E-11 91.3 22.7 237 89-354 280-526 (579)
108 KOG1125 TPR repeat-containing 98.8 2.9E-07 6.4E-12 94.6 18.6 219 475-703 294-525 (579)
109 PF04733 Coatomer_E: Coatomer 98.8 1.7E-07 3.6E-12 93.5 15.5 250 476-741 11-266 (290)
110 KOG1914 mRNA cleavage and poly 98.8 0.00042 9E-09 71.3 43.0 428 248-704 13-500 (656)
111 PLN02789 farnesyltranstransfer 98.7 1E-05 2.2E-10 81.8 27.3 217 515-737 51-299 (320)
112 PLN02789 farnesyltranstransfer 98.7 7.4E-06 1.6E-10 82.8 25.9 215 187-408 39-267 (320)
113 PRK14720 transcript cleavage f 98.7 0.00018 3.9E-09 81.1 37.8 223 125-407 27-268 (906)
114 PRK15179 Vi polysaccharide bio 98.7 1.1E-06 2.3E-11 97.9 20.1 163 110-298 67-229 (694)
115 PF12854 PPR_1: PPR repeat 98.6 3.5E-08 7.7E-13 62.3 4.0 32 251-282 2-33 (34)
116 PF12854 PPR_1: PPR repeat 98.6 3.8E-08 8.3E-13 62.2 4.1 32 286-317 2-33 (34)
117 TIGR03302 OM_YfiO outer membra 98.6 3.8E-06 8.2E-11 82.5 20.0 186 127-355 31-232 (235)
118 PRK10370 formate-dependent nit 98.6 7.2E-06 1.6E-10 77.2 20.7 156 543-714 23-181 (198)
119 KOG1128 Uncharacterized conser 98.6 2.9E-06 6.3E-11 89.7 19.1 219 464-704 396-615 (777)
120 TIGR03302 OM_YfiO outer membra 98.6 8.2E-06 1.8E-10 80.1 21.6 188 533-741 30-233 (235)
121 COG5010 TadD Flp pilus assembl 98.6 1.7E-05 3.6E-10 74.3 21.4 157 541-701 71-227 (257)
122 KOG1070 rRNA processing protei 98.6 5.1E-05 1.1E-09 85.9 27.8 202 502-709 1459-1667(1710)
123 KOG1128 Uncharacterized conser 98.6 4.9E-06 1.1E-10 88.1 18.9 222 358-600 395-616 (777)
124 KOG1070 rRNA processing protei 98.5 5.4E-05 1.2E-09 85.7 27.5 218 453-675 1446-1668(1710)
125 PRK15179 Vi polysaccharide bio 98.5 9.2E-06 2E-10 90.5 21.7 151 178-333 79-229 (694)
126 PRK10370 formate-dependent nit 98.5 1.9E-05 4.1E-10 74.3 20.8 120 549-671 52-174 (198)
127 PRK14720 transcript cleavage f 98.5 3.9E-05 8.5E-10 86.3 25.9 241 426-722 25-268 (906)
128 PRK15359 type III secretion sy 98.5 3.2E-06 7E-11 75.2 14.3 121 591-718 13-133 (144)
129 PRK15359 type III secretion sy 98.5 1.1E-05 2.3E-10 71.8 17.6 94 646-741 29-122 (144)
130 COG5010 TadD Flp pilus assembl 98.5 3.3E-05 7.2E-10 72.3 19.9 152 233-388 78-229 (257)
131 KOG3081 Vesicle coat complex C 98.4 0.00049 1.1E-08 64.6 26.6 150 544-704 116-270 (299)
132 TIGR02552 LcrH_SycD type III s 98.4 5.9E-06 1.3E-10 73.1 13.8 96 644-741 20-115 (135)
133 KOG3081 Vesicle coat complex C 98.4 0.00015 3.2E-09 67.9 22.9 247 476-739 18-270 (299)
134 COG4783 Putative Zn-dependent 98.4 7E-05 1.5E-09 76.3 21.3 150 128-320 305-454 (484)
135 KOG3060 Uncharacterized conser 98.4 0.00025 5.4E-09 66.0 22.7 189 513-705 24-220 (289)
136 COG4783 Putative Zn-dependent 98.3 0.00019 4.1E-09 73.2 23.1 138 546-705 316-454 (484)
137 KOG3060 Uncharacterized conser 98.3 0.0008 1.7E-08 62.7 23.7 191 477-672 23-222 (289)
138 PF09976 TPR_21: Tetratricopep 98.2 6.6E-05 1.4E-09 67.1 15.7 126 609-738 15-145 (145)
139 TIGR02552 LcrH_SycD type III s 98.1 5.6E-05 1.2E-09 66.7 13.3 106 121-250 9-114 (135)
140 PF12895 Apc3: Anaphase-promot 98.1 6.5E-06 1.4E-10 65.6 5.5 82 654-737 2-84 (84)
141 KOG2041 WD40 repeat protein [G 98.0 0.025 5.4E-07 60.3 31.7 204 182-421 689-903 (1189)
142 PF09295 ChAPs: ChAPs (Chs5p-A 98.0 0.00017 3.7E-09 74.5 16.2 121 611-737 174-294 (395)
143 PRK15363 pathogenicity island 98.0 0.0001 2.2E-09 64.4 12.3 87 616-704 45-131 (157)
144 PF07079 DUF1347: Protein of u 98.0 0.03 6.4E-07 57.0 47.6 136 587-739 396-544 (549)
145 cd00189 TPR Tetratricopeptide 98.0 0.00014 3E-09 59.2 11.7 95 644-740 3-97 (100)
146 TIGR02795 tol_pal_ybgF tol-pal 98.0 0.00016 3.4E-09 62.1 12.5 100 644-743 5-108 (119)
147 PF09976 TPR_21: Tetratricopep 97.9 0.00024 5.2E-09 63.5 13.5 94 186-281 49-143 (145)
148 TIGR00756 PPR pentatricopeptid 97.9 1.5E-05 3.2E-10 51.2 4.1 31 294-324 3-33 (35)
149 KOG0550 Molecular chaperone (D 97.9 0.0046 1E-07 61.8 22.7 232 509-746 177-429 (486)
150 TIGR00756 PPR pentatricopeptid 97.9 2.4E-05 5.1E-10 50.2 4.5 34 258-291 2-35 (35)
151 PF09295 ChAPs: ChAPs (Chs5p-A 97.9 0.0006 1.3E-08 70.5 16.4 125 538-669 171-296 (395)
152 KOG0550 Molecular chaperone (D 97.8 0.0043 9.4E-08 62.0 20.9 52 108-159 62-113 (486)
153 PF13812 PPR_3: Pentatricopept 97.8 3.5E-05 7.6E-10 49.0 4.2 32 258-289 3-34 (34)
154 PF13812 PPR_3: Pentatricopept 97.8 3.8E-05 8.3E-10 48.8 4.0 33 292-324 2-34 (34)
155 PLN03088 SGT1, suppressor of 97.8 0.00035 7.6E-09 72.6 13.4 104 612-718 8-111 (356)
156 TIGR02795 tol_pal_ybgF tol-pal 97.7 0.0015 3.2E-08 56.0 14.3 99 608-706 4-106 (119)
157 KOG2041 WD40 repeat protein [G 97.7 0.12 2.7E-06 55.2 30.4 154 340-526 748-903 (1189)
158 PRK15363 pathogenicity island 97.7 0.00067 1.5E-08 59.4 11.1 97 186-285 36-132 (157)
159 cd00189 TPR Tetratricopeptide 97.6 0.00098 2.1E-08 54.0 11.8 95 609-705 3-97 (100)
160 PLN03088 SGT1, suppressor of 97.6 0.00055 1.2E-08 71.1 12.3 100 107-230 14-113 (356)
161 PRK02603 photosystem I assembl 97.6 0.0017 3.8E-08 59.9 14.5 85 608-693 37-123 (172)
162 PF14938 SNAP: Soluble NSF att 97.6 0.0055 1.2E-07 61.7 19.1 28 186-213 36-63 (282)
163 KOG0553 TPR repeat-containing 97.6 0.00045 9.8E-09 66.2 10.3 100 613-716 88-187 (304)
164 KOG1130 Predicted G-alpha GTPa 97.6 0.0017 3.7E-08 64.5 14.4 132 573-704 197-343 (639)
165 KOG0553 TPR repeat-containing 97.6 0.00042 9.1E-09 66.5 9.7 100 108-231 94-193 (304)
166 PF01535 PPR: PPR repeat; Int 97.6 6.9E-05 1.5E-09 46.4 3.1 29 258-286 2-30 (31)
167 PF12895 Apc3: Anaphase-promot 97.6 0.00013 2.7E-09 58.1 5.3 81 619-701 2-83 (84)
168 PF13414 TPR_11: TPR repeat; P 97.6 0.00032 7E-09 53.3 7.4 65 675-740 2-67 (69)
169 PRK10866 outer membrane biogen 97.6 0.046 9.9E-07 53.3 24.0 58 681-738 180-239 (243)
170 PRK10803 tol-pal system protei 97.6 0.001 2.2E-08 65.3 12.3 103 643-745 145-251 (263)
171 PF10037 MRP-S27: Mitochondria 97.5 0.0016 3.5E-08 67.6 14.1 122 288-409 63-186 (429)
172 PF13432 TPR_16: Tetratricopep 97.5 0.00037 8E-09 52.2 7.0 58 135-214 3-60 (65)
173 PF12688 TPR_5: Tetratrico pep 97.5 0.003 6.5E-08 53.4 12.9 90 614-703 9-102 (120)
174 PRK02603 photosystem I assembl 97.5 0.0028 6E-08 58.5 13.9 97 183-280 33-130 (172)
175 PRK10866 outer membrane biogen 97.5 0.027 5.9E-07 54.9 21.4 67 185-253 32-101 (243)
176 COG4235 Cytochrome c biogenesi 97.5 0.0026 5.6E-08 61.6 13.8 114 182-300 153-269 (287)
177 PF10037 MRP-S27: Mitochondria 97.5 0.0017 3.6E-08 67.6 13.5 121 428-548 63-185 (429)
178 PF01535 PPR: PPR repeat; Int 97.5 0.00011 2.4E-09 45.5 3.1 29 293-321 2-30 (31)
179 COG4700 Uncharacterized protei 97.5 0.033 7.1E-07 49.6 19.2 132 568-703 86-220 (251)
180 CHL00033 ycf3 photosystem I as 97.5 0.0022 4.8E-08 58.9 13.2 94 608-702 37-139 (168)
181 CHL00033 ycf3 photosystem I as 97.5 0.0023 4.9E-08 58.9 13.1 99 641-740 35-142 (168)
182 PF13432 TPR_16: Tetratricopep 97.5 0.00048 1.1E-08 51.6 7.1 59 682-741 3-61 (65)
183 PF12688 TPR_5: Tetratrico pep 97.5 0.0052 1.1E-07 52.0 13.9 113 186-302 2-117 (120)
184 PF14559 TPR_19: Tetratricopep 97.5 0.00034 7.5E-09 53.0 6.2 65 140-228 2-66 (68)
185 PRK10153 DNA-binding transcrip 97.4 0.015 3.3E-07 63.3 20.7 71 640-714 419-489 (517)
186 PF08579 RPM2: Mitochondrial r 97.4 0.0017 3.7E-08 52.6 9.7 75 262-336 31-114 (120)
187 COG4235 Cytochrome c biogenesi 97.4 0.0098 2.1E-07 57.7 16.5 125 205-335 142-269 (287)
188 COG3898 Uncharacterized membra 97.4 0.19 4.1E-06 50.3 34.1 321 100-460 58-392 (531)
189 PRK10153 DNA-binding transcrip 97.4 0.013 2.9E-07 63.7 19.1 85 657-743 400-485 (517)
190 PF08579 RPM2: Mitochondrial r 97.3 0.0023 5E-08 51.9 9.5 80 294-373 28-116 (120)
191 KOG1130 Predicted G-alpha GTPa 97.3 0.0049 1.1E-07 61.4 13.3 288 439-742 25-346 (639)
192 PF14938 SNAP: Soluble NSF att 97.3 0.0089 1.9E-07 60.1 15.8 166 537-704 36-224 (282)
193 PF05843 Suf: Suppressor of fo 97.3 0.0045 9.8E-08 62.0 13.4 131 572-705 2-136 (280)
194 COG4700 Uncharacterized protei 97.3 0.083 1.8E-06 47.2 18.9 134 253-388 86-220 (251)
195 PF13414 TPR_11: TPR repeat; P 97.2 0.0014 3E-08 49.7 7.3 65 640-705 2-67 (69)
196 KOG2796 Uncharacterized conser 97.2 0.2 4.2E-06 47.5 22.3 242 127-391 67-316 (366)
197 PF14559 TPR_19: Tetratricopep 97.2 0.0011 2.3E-08 50.2 6.2 53 652-705 2-54 (68)
198 PF05843 Suf: Suppressor of fo 97.1 0.0085 1.8E-07 60.0 13.7 48 306-354 51-98 (280)
199 PRK15331 chaperone protein Sic 97.1 0.013 2.7E-07 51.8 12.5 87 616-704 47-133 (165)
200 KOG1538 Uncharacterized conser 97.1 0.095 2.1E-06 55.6 20.6 22 684-705 825-846 (1081)
201 PF13371 TPR_9: Tetratricopept 97.0 0.0017 3.8E-08 49.9 6.2 56 649-705 3-58 (73)
202 PF13525 YfiO: Outer membrane 97.0 0.082 1.8E-06 50.2 18.7 49 681-731 146-198 (203)
203 PF06239 ECSIT: Evolutionarily 97.0 0.0095 2.1E-07 54.8 11.5 103 255-376 46-153 (228)
204 PF04840 Vps16_C: Vps16, C-ter 97.0 0.47 1E-05 48.2 30.1 62 294-369 3-64 (319)
205 COG5107 RNA14 Pre-mRNA 3'-end 97.0 0.5 1.1E-05 48.3 36.3 132 570-705 396-531 (660)
206 PF13371 TPR_9: Tetratricopept 97.0 0.0039 8.3E-08 47.9 7.6 65 136-224 2-66 (73)
207 COG1729 Uncharacterized protei 96.9 0.0073 1.6E-07 57.8 10.4 102 643-745 144-249 (262)
208 COG3898 Uncharacterized membra 96.9 0.53 1.2E-05 47.3 32.8 296 294-605 85-397 (531)
209 PF06239 ECSIT: Evolutionarily 96.9 0.024 5.1E-07 52.3 12.5 86 360-445 46-152 (228)
210 PF07079 DUF1347: Protein of u 96.9 0.7 1.5E-05 47.5 47.4 90 586-682 436-531 (549)
211 PF13424 TPR_12: Tetratricopep 96.9 0.0034 7.4E-08 49.0 6.4 63 677-739 6-74 (78)
212 PF03704 BTAD: Bacterial trans 96.8 0.13 2.8E-06 45.8 16.7 72 643-715 64-140 (146)
213 KOG2796 Uncharacterized conser 96.7 0.54 1.2E-05 44.6 22.4 174 574-751 180-363 (366)
214 COG0457 NrfG FOG: TPR repeat [ 96.7 0.59 1.3E-05 45.0 31.4 222 480-704 37-264 (291)
215 KOG2114 Vacuolar assembly/sort 96.7 1.3 2.8E-05 49.1 26.2 180 188-388 337-517 (933)
216 PF04840 Vps16_C: Vps16, C-ter 96.7 0.84 1.8E-05 46.4 29.5 102 367-488 183-284 (319)
217 PF13525 YfiO: Outer membrane 96.7 0.23 5E-06 47.1 18.9 69 185-253 5-74 (203)
218 PRK10803 tol-pal system protei 96.6 0.027 5.8E-07 55.4 12.2 92 140-252 154-248 (263)
219 KOG4555 TPR repeat-containing 96.6 0.037 8.1E-07 46.1 10.8 89 616-706 53-145 (175)
220 COG4785 NlpI Lipoprotein NlpI, 96.6 0.19 4E-06 46.2 16.0 161 182-355 96-266 (297)
221 KOG2114 Vacuolar assembly/sort 96.6 1.4 3.1E-05 48.9 25.3 177 260-457 338-516 (933)
222 COG5107 RNA14 Pre-mRNA 3'-end 96.5 1.2 2.6E-05 45.7 39.7 135 605-742 396-533 (660)
223 PF13424 TPR_12: Tetratricopep 96.5 0.0093 2E-07 46.5 6.5 63 642-704 6-74 (78)
224 PRK11906 transcriptional regul 96.5 0.12 2.5E-06 53.8 15.7 118 111-252 274-403 (458)
225 PRK15331 chaperone protein Sic 96.4 0.12 2.7E-06 45.7 13.7 86 582-669 48-133 (165)
226 KOG0543 FKBP-type peptidyl-pro 96.4 0.085 1.8E-06 53.4 14.2 100 641-742 257-357 (397)
227 PF04184 ST7: ST7 protein; In 96.4 0.28 6.1E-06 51.1 17.6 107 641-747 259-383 (539)
228 KOG1941 Acetylcholine receptor 96.3 0.12 2.6E-06 51.1 14.1 47 476-522 16-64 (518)
229 KOG1550 Extracellular protein 96.3 2.4 5.3E-05 47.1 27.4 78 656-741 454-539 (552)
230 COG4105 ComL DNA uptake lipopr 96.3 1 2.3E-05 43.0 19.8 188 129-355 34-233 (254)
231 PF13281 DUF4071: Domain of un 96.3 0.6 1.3E-05 47.9 19.5 32 674-705 303-334 (374)
232 PRK11906 transcriptional regul 96.3 0.13 2.7E-06 53.6 14.6 149 586-739 273-435 (458)
233 PLN03098 LPA1 LOW PSII ACCUMUL 96.2 0.028 6.1E-07 58.1 9.7 100 639-742 73-176 (453)
234 KOG2610 Uncharacterized conser 96.2 0.12 2.6E-06 50.6 13.1 114 549-665 116-233 (491)
235 PF03704 BTAD: Bacterial trans 96.0 0.27 5.9E-06 43.8 14.5 70 363-433 64-138 (146)
236 PF10300 DUF3808: Protein of u 96.0 0.4 8.7E-06 51.9 18.0 184 114-318 176-374 (468)
237 PF09205 DUF1955: Domain of un 96.0 0.8 1.7E-05 38.6 15.1 139 583-743 14-152 (161)
238 KOG2280 Vacuolar assembly/sort 96.0 3.4 7.4E-05 45.5 34.6 108 608-734 686-793 (829)
239 PF10300 DUF3808: Protein of u 95.9 0.39 8.4E-06 52.0 17.4 119 619-740 246-376 (468)
240 KOG1585 Protein required for f 95.9 0.69 1.5E-05 43.5 16.1 208 184-418 30-249 (308)
241 KOG1538 Uncharacterized conser 95.9 0.57 1.2E-05 50.1 17.2 89 465-564 746-845 (1081)
242 COG4649 Uncharacterized protei 95.8 0.49 1.1E-05 41.9 14.0 125 195-319 68-195 (221)
243 PF13281 DUF4071: Domain of un 95.8 1.9 4.2E-05 44.3 20.7 33 409-441 195-227 (374)
244 PF13512 TPR_18: Tetratricopep 95.8 0.37 8.1E-06 41.7 13.3 20 727-746 115-134 (142)
245 PLN03098 LPA1 LOW PSII ACCUMUL 95.8 0.13 2.7E-06 53.5 12.1 65 604-670 73-141 (453)
246 KOG1920 IkappaB kinase complex 95.7 5.7 0.00012 46.2 25.7 108 469-596 942-1051(1265)
247 COG1729 Uncharacterized protei 95.7 0.1 2.3E-06 50.1 10.5 103 132-253 144-247 (262)
248 COG4105 ComL DNA uptake lipopr 95.6 2.2 4.8E-05 40.9 21.4 52 682-734 173-227 (254)
249 PF09205 DUF1955: Domain of un 95.6 1.1 2.4E-05 37.8 14.4 59 613-672 93-151 (161)
250 KOG4555 TPR repeat-containing 95.5 0.27 5.8E-06 41.2 10.8 96 135-252 49-146 (175)
251 KOG0543 FKBP-type peptidyl-pro 95.5 0.064 1.4E-06 54.2 8.6 71 676-747 257-327 (397)
252 PF04184 ST7: ST7 protein; In 95.5 0.8 1.7E-05 47.9 16.4 23 330-352 299-321 (539)
253 PF13428 TPR_14: Tetratricopep 95.4 0.032 6.9E-07 37.6 4.5 41 185-227 1-41 (44)
254 COG0457 NrfG FOG: TPR repeat [ 95.4 2.6 5.7E-05 40.2 33.5 200 467-669 60-264 (291)
255 KOG1258 mRNA processing protei 95.4 4.9 0.00011 43.3 35.1 180 430-616 296-485 (577)
256 COG3118 Thioredoxin domain-con 95.3 2.5 5.4E-05 41.3 18.2 152 581-735 144-296 (304)
257 COG3118 Thioredoxin domain-con 95.1 2.3 5E-05 41.6 17.4 57 192-250 141-197 (304)
258 COG4649 Uncharacterized protei 95.1 0.99 2.1E-05 40.1 13.4 138 571-709 59-200 (221)
259 smart00299 CLH Clathrin heavy 94.8 2.5 5.5E-05 37.1 16.1 125 260-407 11-136 (140)
260 COG4785 NlpI Lipoprotein NlpI, 94.8 3.4 7.4E-05 38.3 17.8 27 712-738 238-264 (297)
261 KOG2280 Vacuolar assembly/sort 94.6 9.2 0.0002 42.3 33.2 344 321-701 427-795 (829)
262 PF13428 TPR_14: Tetratricopep 94.5 0.13 2.9E-06 34.5 5.5 39 678-717 3-41 (44)
263 PF12921 ATP13: Mitochondrial 94.5 0.65 1.4E-05 39.8 10.9 96 605-720 1-97 (126)
264 KOG1941 Acetylcholine receptor 94.4 3.6 7.8E-05 41.2 16.9 228 441-668 16-273 (518)
265 PF08631 SPO22: Meiosis protei 94.4 6 0.00013 39.6 27.1 164 572-738 85-273 (278)
266 PF12921 ATP13: Mitochondrial 94.4 0.7 1.5E-05 39.6 10.9 80 362-441 3-98 (126)
267 PF13512 TPR_18: Tetratricopep 94.4 1.7 3.8E-05 37.7 13.2 78 263-340 17-96 (142)
268 KOG1550 Extracellular protein 94.4 8 0.00017 43.0 22.2 46 446-494 227-277 (552)
269 COG2909 MalT ATP-dependent tra 94.4 12 0.00025 42.6 26.4 143 136-284 367-525 (894)
270 KOG1585 Protein required for f 94.2 5.2 0.00011 37.9 18.4 205 468-699 33-250 (308)
271 PF04053 Coatomer_WDAD: Coatom 94.1 2 4.3E-05 45.9 15.9 130 188-351 298-427 (443)
272 PF08631 SPO22: Meiosis protei 93.8 8.1 0.00018 38.7 27.2 165 538-704 86-274 (278)
273 KOG2610 Uncharacterized conser 93.7 1.5 3.2E-05 43.3 12.6 117 267-386 114-234 (491)
274 KOG1258 mRNA processing protei 93.6 13 0.00028 40.2 36.4 378 186-585 80-489 (577)
275 PF04053 Coatomer_WDAD: Coatom 93.5 2.9 6.2E-05 44.7 16.0 24 572-595 348-371 (443)
276 smart00299 CLH Clathrin heavy 93.2 5.5 0.00012 35.0 16.3 41 542-583 13-53 (140)
277 COG2976 Uncharacterized protei 93.1 3.6 7.7E-05 37.6 13.2 92 648-741 96-189 (207)
278 PF13431 TPR_17: Tetratricopep 93.0 0.12 2.6E-06 32.4 2.9 32 699-731 2-33 (34)
279 COG3629 DnrI DNA-binding trans 93.0 0.6 1.3E-05 45.8 9.0 92 116-229 136-236 (280)
280 KOG3941 Intermediate in Toll s 93.0 0.66 1.4E-05 44.5 8.9 88 269-376 85-173 (406)
281 KOG4234 TPR repeat-containing 92.9 0.69 1.5E-05 42.1 8.4 92 613-706 102-198 (271)
282 PF02259 FAT: FAT domain; Int 92.7 14 0.00031 38.3 22.7 65 605-669 145-212 (352)
283 PF13431 TPR_17: Tetratricopep 92.7 0.15 3.2E-06 32.0 2.9 32 664-696 2-33 (34)
284 KOG1920 IkappaB kinase complex 92.5 27 0.00058 41.1 27.1 104 579-702 947-1052(1265)
285 PRK11619 lytic murein transgly 92.5 23 0.00049 40.2 35.4 95 473-573 414-513 (644)
286 PF13176 TPR_7: Tetratricopept 92.4 0.29 6.4E-06 31.1 4.2 26 714-739 2-27 (36)
287 KOG4648 Uncharacterized conser 92.3 0.3 6.4E-06 48.0 5.8 89 613-704 104-193 (536)
288 KOG3941 Intermediate in Toll s 92.2 1.1 2.4E-05 43.0 9.4 31 415-445 142-172 (406)
289 PF13170 DUF4003: Protein of u 92.0 15 0.00032 37.0 20.2 130 555-686 81-227 (297)
290 PF07035 Mic1: Colon cancer-as 92.0 7.6 0.00016 35.0 14.0 32 313-344 16-47 (167)
291 PF09613 HrpB1_HrpK: Bacterial 92.0 4.1 9E-05 36.1 12.0 59 191-251 16-74 (160)
292 PF00515 TPR_1: Tetratricopept 91.8 0.37 8E-06 30.0 4.1 32 186-219 2-33 (34)
293 PF10345 Cohesin_load: Cohesin 91.5 29 0.00063 39.3 42.8 192 547-739 372-605 (608)
294 PF07719 TPR_2: Tetratricopept 91.4 0.6 1.3E-05 29.0 4.8 29 713-741 3-31 (34)
295 KOG2066 Vacuolar assembly/sort 91.3 29 0.00062 38.9 27.0 168 192-389 363-533 (846)
296 COG3629 DnrI DNA-binding trans 91.3 2.5 5.4E-05 41.6 11.0 74 644-718 156-234 (280)
297 PF07719 TPR_2: Tetratricopept 91.2 0.43 9.3E-06 29.7 4.0 29 186-214 2-30 (34)
298 PF13176 TPR_7: Tetratricopept 91.2 0.49 1.1E-05 30.1 4.2 27 678-704 1-27 (36)
299 PF10345 Cohesin_load: Cohesin 91.2 31 0.00067 39.1 44.2 189 113-318 39-252 (608)
300 COG2909 MalT ATP-dependent tra 91.2 32 0.0007 39.2 25.2 88 547-634 426-525 (894)
301 KOG4234 TPR repeat-containing 91.0 4.8 0.0001 36.9 11.5 93 579-673 103-200 (271)
302 PF10602 RPN7: 26S proteasome 90.8 2.6 5.7E-05 38.7 10.3 61 608-668 38-100 (177)
303 COG1747 Uncharacterized N-term 90.6 26 0.00055 37.2 26.1 95 500-599 65-159 (711)
304 COG0790 FOG: TPR repeat, SEL1 90.6 21 0.00045 36.1 23.9 77 659-742 173-268 (292)
305 PF07035 Mic1: Colon cancer-as 90.1 14 0.0003 33.4 15.1 130 277-420 15-144 (167)
306 PF10602 RPN7: 26S proteasome 89.8 4.2 9.1E-05 37.4 10.7 63 572-634 37-101 (177)
307 PF00515 TPR_1: Tetratricopept 89.6 1.1 2.3E-05 27.9 4.7 28 713-740 3-30 (34)
308 PF09613 HrpB1_HrpK: Bacterial 89.4 12 0.00025 33.4 12.4 83 131-237 12-94 (160)
309 COG2976 Uncharacterized protei 89.0 18 0.0004 33.2 15.2 89 613-706 96-189 (207)
310 PF09986 DUF2225: Uncharacteri 88.9 4.4 9.6E-05 38.5 10.5 93 653-745 89-199 (214)
311 PF06552 TOM20_plant: Plant sp 88.9 2.2 4.8E-05 38.5 7.7 61 182-251 66-137 (186)
312 PF04910 Tcf25: Transcriptiona 88.5 17 0.00036 37.9 15.2 132 110-249 25-167 (360)
313 KOG0890 Protein kinase of the 88.5 86 0.0019 40.2 26.0 317 401-743 1388-1734(2382)
314 PF13174 TPR_6: Tetratricopept 88.4 0.83 1.8E-05 28.0 3.6 29 714-742 3-31 (33)
315 PF13170 DUF4003: Protein of u 88.3 31 0.00066 34.8 21.3 47 274-320 80-132 (297)
316 COG1747 Uncharacterized N-term 88.2 39 0.00084 35.9 26.2 167 463-636 63-235 (711)
317 PF02259 FAT: FAT domain; Int 88.2 35 0.00076 35.4 25.7 68 568-635 143-213 (352)
318 KOG2396 HAT (Half-A-TPR) repea 87.8 41 0.00089 35.7 38.0 99 533-634 456-558 (568)
319 KOG0276 Vesicle coat complex C 87.8 5.4 0.00012 42.8 10.8 26 257-282 667-692 (794)
320 PF04097 Nic96: Nup93/Nic96; 87.4 19 0.00042 40.6 16.0 45 329-374 114-158 (613)
321 TIGR03504 FimV_Cterm FimV C-te 86.3 1.3 2.8E-05 29.7 3.6 27 190-216 4-30 (44)
322 PF13374 TPR_10: Tetratricopep 86.3 1.7 3.8E-05 28.3 4.5 30 712-741 3-32 (42)
323 KOG2062 26S proteasome regulat 86.0 64 0.0014 36.1 30.0 121 615-739 510-634 (929)
324 PF13174 TPR_6: Tetratricopept 85.9 0.96 2.1E-05 27.7 2.9 31 187-219 2-32 (33)
325 PRK09687 putative lyase; Provi 85.6 41 0.00089 33.6 27.4 14 363-376 144-157 (280)
326 PF13181 TPR_8: Tetratricopept 85.6 2.2 4.7E-05 26.4 4.4 30 712-741 2-31 (34)
327 KOG2908 26S proteasome regulat 85.3 44 0.00095 33.6 15.6 49 262-310 121-176 (380)
328 PF13181 TPR_8: Tetratricopept 85.2 1.6 3.4E-05 27.1 3.6 28 187-214 3-30 (34)
329 PF13374 TPR_10: Tetratricopep 84.8 2.3 5E-05 27.7 4.5 29 676-704 2-30 (42)
330 PF04097 Nic96: Nup93/Nic96; 84.7 77 0.0017 35.9 22.4 88 403-495 265-356 (613)
331 PF04910 Tcf25: Transcriptiona 84.4 56 0.0012 34.1 17.7 100 640-741 99-223 (360)
332 KOG4570 Uncharacterized conser 84.4 11 0.00024 37.1 10.4 101 533-635 61-164 (418)
333 PF11207 DUF2989: Protein of u 84.4 9.1 0.0002 35.5 9.4 41 690-730 154-197 (203)
334 PF11207 DUF2989: Protein of u 84.1 14 0.0003 34.3 10.5 78 619-697 119-199 (203)
335 KOG2396 HAT (Half-A-TPR) repea 84.1 63 0.0014 34.4 39.7 241 484-739 300-558 (568)
336 PF07721 TPR_4: Tetratricopept 84.1 1.4 3.1E-05 25.5 2.8 24 186-209 2-25 (26)
337 COG0790 FOG: TPR repeat, SEL1 84.1 50 0.0011 33.2 22.9 80 623-709 172-270 (292)
338 KOG1464 COP9 signalosome, subu 84.0 43 0.00093 32.4 17.6 184 513-697 39-252 (440)
339 KOG0276 Vesicle coat complex C 83.8 29 0.00062 37.6 13.8 149 478-666 598-746 (794)
340 KOG4570 Uncharacterized conser 83.8 11 0.00024 37.1 10.0 128 577-706 25-165 (418)
341 TIGR02561 HrpB1_HrpK type III 83.4 31 0.00066 30.3 13.3 52 198-251 23-74 (153)
342 KOG3364 Membrane protein invol 83.4 9.6 0.00021 32.6 8.2 68 674-741 30-101 (149)
343 KOG1464 COP9 signalosome, subu 83.0 47 0.001 32.1 18.9 203 216-419 22-254 (440)
344 COG4455 ImpE Protein of avirul 83.0 8.3 0.00018 35.9 8.4 76 609-685 4-81 (273)
345 PRK15180 Vi polysaccharide bio 83.0 11 0.00023 39.4 10.1 127 543-673 296-423 (831)
346 PF08424 NRDE-2: NRDE-2, neces 82.9 60 0.0013 33.3 19.0 123 623-747 48-191 (321)
347 TIGR02561 HrpB1_HrpK type III 82.3 30 0.00065 30.4 11.1 52 234-286 23-74 (153)
348 KOG2066 Vacuolar assembly/sort 82.2 94 0.002 35.1 28.9 75 333-413 363-440 (846)
349 KOG2062 26S proteasome regulat 82.2 92 0.002 34.9 37.3 121 580-704 510-634 (929)
350 PF06552 TOM20_plant: Plant sp 82.0 28 0.0006 31.7 11.2 76 658-742 52-138 (186)
351 KOG2063 Vacuolar assembly/sort 80.7 1.2E+02 0.0026 35.4 24.0 39 545-583 600-638 (877)
352 KOG4642 Chaperone-dependent E3 80.5 24 0.00053 33.5 10.6 84 141-248 22-105 (284)
353 PRK09687 putative lyase; Provi 80.2 67 0.0015 32.1 28.7 232 289-545 35-276 (280)
354 COG3947 Response regulator con 80.0 65 0.0014 31.8 16.2 60 678-738 281-340 (361)
355 KOG0687 26S proteasome regulat 79.6 71 0.0015 32.0 14.7 97 608-704 106-209 (393)
356 KOG2422 Uncharacterized conser 79.2 97 0.0021 33.7 15.7 115 125-247 280-404 (665)
357 KOG2471 TPR repeat-containing 79.0 73 0.0016 33.8 14.3 40 682-722 341-380 (696)
358 TIGR03504 FimV_Cterm FimV C-te 78.9 3.5 7.6E-05 27.6 3.5 26 716-741 4-29 (44)
359 KOG4648 Uncharacterized conser 78.8 10 0.00022 37.7 8.1 90 579-671 105-195 (536)
360 COG5187 RPN7 26S proteasome re 78.1 53 0.0011 32.2 12.3 24 608-631 117-140 (412)
361 PF07721 TPR_4: Tetratricopept 77.7 3.1 6.7E-05 24.1 2.7 21 715-735 5-25 (26)
362 cd00923 Cyt_c_Oxidase_Va Cytoc 77.3 17 0.00038 29.0 7.4 40 664-703 30-69 (103)
363 KOG1586 Protein required for f 76.3 73 0.0016 30.4 20.2 23 371-393 164-186 (288)
364 cd00923 Cyt_c_Oxidase_Va Cytoc 75.9 23 0.0005 28.4 7.7 47 624-670 25-71 (103)
365 KOG0551 Hsp90 co-chaperone CNS 75.7 19 0.00041 36.0 8.9 95 608-703 83-180 (390)
366 KOG4507 Uncharacterized conser 75.3 4.5 9.8E-05 43.1 4.9 100 617-718 618-717 (886)
367 COG4455 ImpE Protein of avirul 75.2 20 0.00043 33.6 8.3 52 368-420 8-59 (273)
368 PF00637 Clathrin: Region in C 74.8 1.3 2.9E-05 39.1 0.9 83 262-351 13-95 (143)
369 PF04190 DUF410: Protein of un 74.2 94 0.002 30.7 14.9 36 705-740 134-170 (260)
370 COG3947 Response regulator con 73.9 96 0.0021 30.6 17.9 70 644-714 282-356 (361)
371 KOG4642 Chaperone-dependent E3 72.6 63 0.0014 30.9 11.0 81 584-668 23-105 (284)
372 smart00028 TPR Tetratricopepti 72.3 6.5 0.00014 23.0 3.5 29 186-214 2-30 (34)
373 PF02284 COX5A: Cytochrome c o 72.1 52 0.0011 26.8 9.2 46 625-670 29-74 (108)
374 KOG4507 Uncharacterized conser 71.4 17 0.00037 39.0 8.0 104 582-687 618-721 (886)
375 PF02284 COX5A: Cytochrome c o 71.0 21 0.00045 28.9 6.5 59 659-718 28-86 (108)
376 KOG1308 Hsp70-interacting prot 70.6 4.8 0.0001 40.2 3.6 120 618-741 126-245 (377)
377 PF14853 Fis1_TPR_C: Fis1 C-te 70.1 19 0.0004 25.3 5.5 41 188-230 4-44 (53)
378 PF07575 Nucleopor_Nup85: Nup8 70.0 1.9E+02 0.0042 32.4 17.5 27 184-211 148-174 (566)
379 KOG2063 Vacuolar assembly/sort 68.7 2.4E+02 0.0052 33.1 20.5 26 259-284 507-532 (877)
380 PF12862 Apc5: Anaphase-promot 68.5 29 0.00063 27.9 7.3 21 719-739 49-69 (94)
381 PF07575 Nucleopor_Nup85: Nup8 68.5 2E+02 0.0044 32.2 16.5 35 409-448 310-344 (566)
382 PF07163 Pex26: Pex26 protein; 68.0 60 0.0013 31.8 10.1 87 611-699 88-181 (309)
383 smart00028 TPR Tetratricopepti 67.7 10 0.00023 22.0 3.8 26 714-739 4-29 (34)
384 PHA02875 ankyrin repeat protei 67.7 1.4E+02 0.0029 31.9 14.6 17 298-314 72-88 (413)
385 PF10579 Rapsyn_N: Rapsyn N-te 66.4 21 0.00045 27.4 5.4 18 653-670 18-35 (80)
386 KOG2034 Vacuolar sorting prote 66.3 2.5E+02 0.0055 32.4 24.5 50 191-248 364-416 (911)
387 KOG2908 26S proteasome regulat 66.3 81 0.0017 31.8 10.8 52 618-669 87-143 (380)
388 PF14853 Fis1_TPR_C: Fis1 C-te 65.8 17 0.00036 25.6 4.6 28 715-742 5-32 (53)
389 KOG2659 LisH motif-containing 65.7 75 0.0016 30.2 10.1 101 602-704 22-131 (228)
390 PF08311 Mad3_BUB1_I: Mad3/BUB 64.7 89 0.0019 26.8 9.9 44 203-246 81-124 (126)
391 PHA02875 ankyrin repeat protei 64.6 1.8E+02 0.004 30.9 14.9 9 299-307 40-48 (413)
392 PF07163 Pex26: Pex26 protein; 64.2 63 0.0014 31.7 9.5 86 262-349 89-181 (309)
393 PF10579 Rapsyn_N: Rapsyn N-te 63.6 20 0.00043 27.5 4.9 48 688-735 18-67 (80)
394 PF00637 Clathrin: Region in C 62.6 2 4.3E-05 37.9 -0.6 83 332-421 13-95 (143)
395 PF04190 DUF410: Protein of un 62.2 1.7E+02 0.0036 28.9 18.9 84 253-355 87-170 (260)
396 KOG3364 Membrane protein invol 62.2 1E+02 0.0023 26.6 10.3 77 126-225 29-109 (149)
397 KOG0687 26S proteasome regulat 62.0 1.8E+02 0.0039 29.3 16.3 95 573-669 106-209 (393)
398 COG5159 RPN6 26S proteasome re 60.7 1.8E+02 0.0038 28.7 21.5 51 402-452 9-66 (421)
399 PF09986 DUF2225: Uncharacteri 60.7 1.6E+02 0.0034 28.1 12.4 63 644-706 121-195 (214)
400 PRK11619 lytic murein transgly 60.1 3.1E+02 0.0067 31.3 42.3 314 193-528 41-373 (644)
401 COG5159 RPN6 26S proteasome re 59.6 1.8E+02 0.004 28.6 21.4 20 366-385 130-149 (421)
402 PRK10941 hypothetical protein; 59.6 1.4E+02 0.0029 29.7 11.4 77 644-721 184-261 (269)
403 KOG1308 Hsp70-interacting prot 59.5 4.6 0.0001 40.3 1.2 89 652-743 125-214 (377)
404 PF13929 mRNA_stabil: mRNA sta 59.5 1.9E+02 0.0041 28.7 18.7 61 428-488 199-260 (292)
405 PRK13800 putative oxidoreducta 59.4 3.8E+02 0.0083 32.2 26.9 248 463-739 632-880 (897)
406 PRK10941 hypothetical protein; 58.5 57 0.0012 32.3 8.6 67 678-745 183-249 (269)
407 TIGR02508 type_III_yscG type I 58.5 99 0.0021 25.1 8.4 50 476-531 49-98 (115)
408 PF14561 TPR_20: Tetratricopep 57.7 62 0.0013 25.8 7.2 35 181-215 18-52 (90)
409 PF14561 TPR_20: Tetratricopep 56.1 1E+02 0.0022 24.5 8.7 53 675-727 21-74 (90)
410 PF09670 Cas_Cas02710: CRISPR- 54.9 1.4E+02 0.0031 31.4 11.4 52 582-634 142-197 (379)
411 COG2178 Predicted RNA-binding 53.6 1.4E+02 0.003 27.6 9.3 16 373-388 133-148 (204)
412 PF11846 DUF3366: Domain of un 53.4 72 0.0016 29.7 8.3 32 673-704 141-172 (193)
413 PF14689 SPOB_a: Sensor_kinase 51.7 36 0.00077 24.9 4.5 24 680-703 27-50 (62)
414 KOG4077 Cytochrome c oxidase, 50.8 1.1E+02 0.0025 25.9 7.6 41 664-704 72-112 (149)
415 PF08311 Mad3_BUB1_I: Mad3/BUB 49.8 1.2E+02 0.0026 26.0 8.2 44 694-737 81-125 (126)
416 KOG1586 Protein required for f 49.4 2.5E+02 0.0054 27.0 22.6 23 406-428 164-186 (288)
417 COG5187 RPN7 26S proteasome re 49.2 2.8E+02 0.006 27.5 14.4 66 537-602 116-186 (412)
418 PF09670 Cas_Cas02710: CRISPR- 49.2 2.9E+02 0.0063 29.1 12.7 55 510-565 140-198 (379)
419 cd08819 CARD_MDA5_2 Caspase ac 49.2 1.1E+02 0.0024 24.1 6.9 38 688-730 48-85 (88)
420 PRK12798 chemotaxis protein; R 48.9 3.5E+02 0.0075 28.6 21.0 193 513-709 124-328 (421)
421 KOG0545 Aryl-hydrocarbon recep 47.9 2.7E+02 0.0058 27.0 12.9 57 648-705 237-293 (329)
422 PF00244 14-3-3: 14-3-3 protei 47.7 2.7E+02 0.0059 27.0 14.5 39 543-581 8-46 (236)
423 PF13929 mRNA_stabil: mRNA sta 47.1 3E+02 0.0066 27.4 18.0 116 411-526 143-263 (292)
424 smart00777 Mad3_BUB1_I Mad3/BU 46.8 1.5E+02 0.0032 25.4 8.1 99 115-246 26-124 (125)
425 PF10366 Vps39_1: Vacuolar sor 45.7 1.4E+02 0.0029 24.8 7.6 26 259-284 42-67 (108)
426 KOG4077 Cytochrome c oxidase, 45.3 1.6E+02 0.0034 25.1 7.6 45 626-670 69-113 (149)
427 PF11817 Foie-gras_1: Foie gra 45.0 1.1E+02 0.0025 29.8 8.4 61 678-738 180-245 (247)
428 PF00244 14-3-3: 14-3-3 protei 45.0 2.9E+02 0.0062 26.8 11.0 40 472-511 7-46 (236)
429 PF13762 MNE1: Mitochondrial s 44.2 2.3E+02 0.0049 25.0 12.0 92 282-373 28-127 (145)
430 PF14689 SPOB_a: Sensor_kinase 44.0 54 0.0012 23.9 4.5 21 367-387 29-49 (62)
431 PF12862 Apc5: Anaphase-promot 43.9 1.4E+02 0.003 23.9 7.4 53 652-704 9-69 (94)
432 KOG3807 Predicted membrane pro 43.8 3.6E+02 0.0078 27.2 11.7 17 338-354 287-303 (556)
433 PRK15180 Vi polysaccharide bio 43.2 4.4E+02 0.0096 28.1 32.1 87 232-320 334-420 (831)
434 KOG0376 Serine-threonine phosp 43.0 49 0.0011 35.0 5.5 105 193-302 12-116 (476)
435 PRK10564 maltose regulon perip 42.3 61 0.0013 32.3 5.8 35 639-673 254-289 (303)
436 cd00280 TRFH Telomeric Repeat 42.3 2.7E+02 0.0059 25.6 9.2 47 189-238 115-161 (200)
437 PF12968 DUF3856: Domain of Un 41.8 2.2E+02 0.0047 24.1 11.4 87 653-739 21-128 (144)
438 PF07720 TPR_3: Tetratricopept 41.5 61 0.0013 20.6 3.8 23 713-735 3-25 (36)
439 KOG4279 Serine/threonine prote 41.3 5.2E+02 0.011 29.4 12.8 18 407-424 298-315 (1226)
440 PF08424 NRDE-2: NRDE-2, neces 40.4 4.2E+02 0.0091 27.1 18.3 117 519-637 49-185 (321)
441 cd00280 TRFH Telomeric Repeat 39.9 1.7E+02 0.0037 26.9 7.6 22 263-284 118-139 (200)
442 PF11848 DUF3368: Domain of un 39.7 1.1E+02 0.0024 20.9 5.2 32 267-298 13-44 (48)
443 KOG3807 Predicted membrane pro 38.8 4.3E+02 0.0093 26.7 13.7 49 617-667 286-337 (556)
444 PF12968 DUF3856: Domain of Un 38.7 1.6E+02 0.0035 24.9 6.7 29 184-212 54-82 (144)
445 PF10366 Vps39_1: Vacuolar sor 37.1 2.4E+02 0.0052 23.4 8.1 26 294-319 42-67 (108)
446 PF06957 COPI_C: Coatomer (COP 37.0 4.5E+02 0.0097 28.0 11.5 36 135-173 124-159 (422)
447 smart00386 HAT HAT (Half-A-TPR 37.0 79 0.0017 18.5 4.0 13 657-669 3-15 (33)
448 PF11848 DUF3368: Domain of un 37.0 1.3E+02 0.0028 20.5 5.2 31 408-438 14-44 (48)
449 KOG0376 Serine-threonine phosp 36.9 39 0.00085 35.7 3.8 98 613-715 11-109 (476)
450 PF11663 Toxin_YhaV: Toxin wit 36.7 35 0.00075 29.3 2.8 31 268-300 107-137 (140)
451 PF11846 DUF3366: Domain of un 36.4 1.6E+02 0.0035 27.4 7.7 33 638-670 141-173 (193)
452 COG2178 Predicted RNA-binding 35.8 3.6E+02 0.0079 25.0 10.4 18 687-704 132-149 (204)
453 PF10255 Paf67: RNA polymerase 34.9 1.9E+02 0.0041 30.5 8.4 98 607-704 76-192 (404)
454 KOG2297 Predicted translation 34.5 4.9E+02 0.011 26.1 20.5 18 608-625 323-340 (412)
455 KOG2005 26S proteasome regulat 34.3 7.2E+02 0.016 28.0 27.9 79 259-347 181-260 (878)
456 KOG0403 Neoplastic transformat 33.6 6.1E+02 0.013 27.0 25.7 464 260-743 54-575 (645)
457 PF04762 IKI3: IKI3 family; I 33.3 9.3E+02 0.02 29.0 17.6 23 189-211 698-720 (928)
458 KOG0890 Protein kinase of the 33.1 1.3E+03 0.028 30.6 36.9 324 134-496 1388-1732(2382)
459 KOG0551 Hsp90 co-chaperone CNS 33.0 3.6E+02 0.0077 27.5 9.3 96 571-668 81-180 (390)
460 cd08819 CARD_MDA5_2 Caspase ac 32.8 2.5E+02 0.0054 22.2 7.3 14 270-283 50-63 (88)
461 cd02680 MIT_calpain7_2 MIT: do 32.2 85 0.0018 24.0 4.0 19 687-705 17-35 (75)
462 PRK10564 maltose regulon perip 32.0 64 0.0014 32.1 4.2 28 295-322 261-288 (303)
463 KOG4567 GTPase-activating prot 31.6 5.5E+02 0.012 25.9 10.3 42 592-633 264-305 (370)
464 PF10516 SHNi-TPR: SHNi-TPR; 31.6 1.1E+02 0.0023 19.8 3.8 29 712-740 2-30 (38)
465 PRK09857 putative transposase; 31.6 2.6E+02 0.0055 28.2 8.6 64 646-710 211-274 (292)
466 KOG1498 26S proteasome regulat 30.8 6.4E+02 0.014 26.4 16.5 101 645-745 135-246 (439)
467 KOG2300 Uncharacterized conser 30.6 7.2E+02 0.016 26.9 36.1 86 407-492 334-430 (629)
468 PF09477 Type_III_YscG: Bacter 30.2 3.2E+02 0.0069 22.6 7.6 81 619-706 19-99 (116)
469 PF07678 A2M_comp: A-macroglob 30.1 2.3E+02 0.005 27.6 7.9 111 205-319 34-160 (246)
470 COG0735 Fur Fe2+/Zn2+ uptake r 30.0 2.7E+02 0.0058 24.6 7.5 59 631-690 11-69 (145)
471 PF11663 Toxin_YhaV: Toxin wit 29.9 55 0.0012 28.1 2.9 22 340-361 109-130 (140)
472 KOG0686 COP9 signalosome, subu 29.6 6.9E+02 0.015 26.3 14.0 62 258-319 152-215 (466)
473 PF15297 CKAP2_C: Cytoskeleton 29.5 5.3E+02 0.011 26.5 10.0 63 658-722 120-186 (353)
474 COG4941 Predicted RNA polymera 29.2 6.4E+02 0.014 25.8 11.5 115 623-740 273-394 (415)
475 KOG2297 Predicted translation 29.1 6.1E+02 0.013 25.5 17.9 16 678-693 323-338 (412)
476 KOG2422 Uncharacterized conser 28.8 8.3E+02 0.018 27.0 17.7 171 548-739 250-447 (665)
477 PHA02537 M terminase endonucle 28.6 4E+02 0.0087 25.6 8.8 23 616-638 93-115 (230)
478 KOG4814 Uncharacterized conser 28.5 5.4E+02 0.012 28.8 10.4 95 573-670 357-457 (872)
479 TIGR02508 type_III_yscG type I 28.4 3.3E+02 0.0072 22.3 8.8 43 112-154 22-64 (115)
480 KOG4521 Nuclear pore complex, 28.2 1.2E+03 0.025 28.5 15.5 180 185-383 920-1124(1480)
481 PF13762 MNE1: Mitochondrial s 27.3 4.4E+02 0.0094 23.3 10.5 80 504-583 42-127 (145)
482 KOG4521 Nuclear pore complex, 27.3 1.2E+03 0.026 28.4 14.9 81 292-379 984-1072(1480)
483 TIGR02710 CRISPR-associated pr 27.3 7.5E+02 0.016 26.0 12.6 18 583-600 142-159 (380)
484 PRK09857 putative transposase; 27.2 4.1E+02 0.0089 26.8 9.2 64 679-743 209-272 (292)
485 PF09477 Type_III_YscG: Bacter 27.2 3.6E+02 0.0079 22.3 9.6 78 111-215 22-99 (116)
486 PF14669 Asp_Glu_race_2: Putat 27.1 5.2E+02 0.011 24.1 13.9 183 319-526 1-206 (233)
487 KOG2582 COP9 signalosome, subu 26.2 7.5E+02 0.016 25.6 19.7 87 254-349 73-163 (422)
488 PF04762 IKI3: IKI3 family; I 26.1 1.2E+03 0.026 28.1 16.8 28 573-600 814-843 (928)
489 PRK13800 putative oxidoreducta 25.9 1.2E+03 0.026 28.0 29.0 261 428-720 632-893 (897)
490 KOG1839 Uncharacterized protei 25.7 7.7E+02 0.017 30.2 12.0 158 582-739 943-1127(1236)
491 COG0735 Fur Fe2+/Zn2+ uptake r 25.5 3E+02 0.0066 24.2 7.0 32 472-503 26-57 (145)
492 KOG2471 TPR repeat-containing 25.5 8.9E+02 0.019 26.2 26.2 107 440-548 249-381 (696)
493 PF03745 DUF309: Domain of unk 25.4 2.7E+02 0.0059 20.3 5.7 49 546-594 9-62 (62)
494 PF09454 Vps23_core: Vps23 cor 25.3 1.3E+02 0.0028 22.2 3.9 49 359-408 6-54 (65)
495 COG5108 RPO41 Mitochondrial DN 24.9 4.8E+02 0.01 29.2 9.3 75 296-373 33-115 (1117)
496 PF15297 CKAP2_C: Cytoskeleton 24.9 3.8E+02 0.0083 27.4 8.2 63 623-687 120-186 (353)
497 PF11817 Foie-gras_1: Foie gra 24.6 3.7E+02 0.0081 26.2 8.3 22 366-387 183-204 (247)
498 COG4976 Predicted methyltransf 24.6 1.3E+02 0.0029 28.6 4.6 60 650-711 4-63 (287)
499 PF09454 Vps23_core: Vps23 cor 24.2 1.4E+02 0.0029 22.2 3.7 48 640-688 7-54 (65)
500 KOG1839 Uncharacterized protei 23.5 9.8E+02 0.021 29.4 12.2 156 546-701 942-1124(1236)
No 1
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=7.1e-74 Score=666.79 Aligned_cols=615 Identities=17% Similarity=0.245 Sum_probs=465.7
Q ss_pred cCChHHHHHHHHhhhhC-CCCChhHHHHHHHHHHhcCChHHHHHHHHHHHcCCCCCchhhhHHHHHHHHHhhhcC-----
Q 004470 108 RSDYRLVLDFFDWACLR-REPILEARCIVVQISVAAKDLKTAHGLIHDFWAKPNLDASIAFTHFVERLIYTYKDW----- 181 (751)
Q Consensus 108 ~~~~~~al~~f~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----- 181 (751)
.++++.|+.+|+..... .+++..++..++..+...+.++.|..++..+++.+.. . ...+...++..|..+
T Consensus 64 ~g~~~~A~~l~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~---~~~~~n~li~~~~~~g~~~~ 139 (857)
T PLN03077 64 HGQLEQALKLLESMQELRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHPS-L---GVRLGNAMLSMFVRFGELVH 139 (857)
T ss_pred CCCHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhhCCCHHHHHHHHHHHHHcCCC-C---CchHHHHHHHHHHhCCChHH
Confidence 46788888888887664 3556667777777778888888888888887765421 1 111222222222211
Q ss_pred ---------CCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCccCHHhHHHHHHHHHhCCCCHHHHHHHHHhchhcCC
Q 004470 182 ---------GSDPHVFDIFFQVLVEARKLNEARKLFEKLLNYGLVISVDSCNLFLSRLSNTCDGLRMVVKSFTEFPELGI 252 (751)
Q Consensus 182 ---------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~l~~~~~~~~~a~~~~~~~~~~~~ 252 (751)
.++..+|+.|+.+|++.|++++|+++|++|...|+.||..+|+.++..+. ..++++.+.+++..+...|+
T Consensus 140 A~~~f~~m~~~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~-~~~~~~~~~~~~~~~~~~g~ 218 (857)
T PLN03077 140 AWYVFGKMPERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCG-GIPDLARGREVHAHVVRFGF 218 (857)
T ss_pred HHHHHhcCCCCCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhC-CccchhhHHHHHHHHHHcCC
Confidence 35677999999999999999999999999999999999999999999886 67888889999999998898
Q ss_pred CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHH
Q 004470 253 CWNTASYNIMIHCLCRFGKIKEAHLLLLQMELRGCSPDVVSFSTIINGYCYLGELQRVLKLIEEMQIKGLKPNPYTYNSV 332 (751)
Q Consensus 253 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l 332 (751)
.||+.+||.||.+|++.|++++|.++|++|.. ||.++||++|.+|++.|++++|+++|++|.+.|+.||..||+.+
T Consensus 219 ~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~----~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~l 294 (857)
T PLN03077 219 ELDVDVVNALITMYVKCGDVVSARLVFDRMPR----RDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSV 294 (857)
T ss_pred CcccchHhHHHHHHhcCCCHHHHHHHHhcCCC----CCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHH
Confidence 89999999999999999999999999988875 68888999999999999999999999999888889999999999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH
Q 004470 333 VRLLCKTSKVVEAETILREMMNQGIVPDNVIYTTLIDGFCKMGNVAAAYRLFDEMRGLNIIPDLLTYTAIICGFCLTGKM 412 (751)
Q Consensus 333 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~ 412 (751)
+.+|++.|+.+.|.+++..|.+.|+.||..+|++||.+|++.|++++|.++|++|.. ||..+|+.+|.+|++.|++
T Consensus 295 l~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~d~~s~n~li~~~~~~g~~ 370 (857)
T PLN03077 295 ISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMET----KDAVSWTAMISGYEKNGLP 370 (857)
T ss_pred HHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCC----CCeeeHHHHHHHHHhCCCH
Confidence 999999999999999999999888889999999999999999999999998888864 6788888888888888888
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 004470 413 VEAEKLFHEMLGRGLEPDEIVYTALIDGYCKAGGMKKAFSLHNNMVHMRLTPNVVTYTALADGLCKSGELETANELLHEM 492 (751)
Q Consensus 413 ~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m 492 (751)
++|+++|++|.+.|+.||..||+.++.+|++.|++++|.++++.+.+.|+.|+..+|+.|+++|++.|++++|.++|++|
T Consensus 371 ~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m 450 (857)
T PLN03077 371 DKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNI 450 (857)
T ss_pred HHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhC
Confidence 88888888888888888888888888888888888888888888888888888888888888888888888888888887
Q ss_pred HHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCC---
Q 004470 493 CRKGLQLNIYTYNSIVNGLCKAGNILQAVKLMEDMEVAGFHPDTFTYTTIMDAYCKSGEMVKAHELLRDMLDKGLQP--- 569 (751)
Q Consensus 493 ~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p--- 569 (751)
.+ +|..+|+.+|.+|++.|+.++|+.+|++|.. ++.||..+|+.++.+|++.|+.+.+.+++..+.+.|+.+
T Consensus 451 ~~----~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~ 525 (857)
T PLN03077 451 PE----KDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGF 525 (857)
T ss_pred CC----CCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccce
Confidence 54 4666777777777777777777777777764 467777777666666666555555555555555555544
Q ss_pred ---------------------------CHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHHcCCH
Q 004470 570 ---------------------------SVVTFNVLMNGFCMSGMIEDGEKLLKWMLEKGLKPNAATYNPLIKQHCLRNDM 622 (751)
Q Consensus 570 ---------------------------~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~g~~p~~~~~~~l~~~~~~~g~~ 622 (751)
|..+|+.+|.+|++.|+.++|.++|++|.+.|+.||..||+.++.+|++.|++
T Consensus 526 ~~naLi~~y~k~G~~~~A~~~f~~~~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v 605 (857)
T PLN03077 526 LPNALLDLYVRCGRMNYAWNQFNSHEKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMV 605 (857)
T ss_pred echHHHHHHHHcCCHHHHHHHHHhcCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChH
Confidence 55555555555555555666666666665555566666666666666666666
Q ss_pred HHHHHHHHHHH-HCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 004470 623 RTTAKIYKGMC-AQGITPDGNTYNILLQGHCKARNMKEAWFLHKEMVQKGFNLTTSSYNALIKGFLKRKKYLEARELFEE 701 (751)
Q Consensus 623 ~~A~~~~~~m~-~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 701 (751)
++|.++|++|. +.|+.|+..+|+.++++|++.|++++|.+++++| .++||..+|++|+.+|...|+.+.|....++
T Consensus 606 ~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m---~~~pd~~~~~aLl~ac~~~~~~e~~e~~a~~ 682 (857)
T PLN03077 606 TQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKM---PITPDPAVWGALLNACRIHRHVELGELAAQH 682 (857)
T ss_pred HHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHC---CCCCCHHHHHHHHHHHHHcCChHHHHHHHHH
Confidence 66666666655 4555556566666666666666666666555555 2455555666666665555555555555555
Q ss_pred HHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCC
Q 004470 702 MRRGGLVADREIYYFFVDINFEEGNTEITLELCDAAIECYLVG 744 (751)
Q Consensus 702 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 744 (751)
+.+.. +.+...|..+.+.|...|+|++|.++.+.|.++|+.+
T Consensus 683 l~~l~-p~~~~~y~ll~n~ya~~g~~~~a~~vr~~M~~~g~~k 724 (857)
T PLN03077 683 IFELD-PNSVGYYILLCNLYADAGKWDEVARVRKTMRENGLTV 724 (857)
T ss_pred HHhhC-CCCcchHHHHHHHHHHCCChHHHHHHHHHHHHcCCCC
Confidence 55532 3345566666777888888888888888888888753
No 2
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=1.1e-70 Score=625.66 Aligned_cols=542 Identities=19% Similarity=0.274 Sum_probs=313.1
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhCCCc-cCHHhHHHHHHHHHhCCCCHHHHHHHHHhchhcCCCcCHHHHHHHHHH
Q 004470 187 VFDIFFQVLVEARKLNEARKLFEKLLNYGLV-ISVDSCNLFLSRLSNTCDGLRMVVKSFTEFPELGICWNTASYNIMIHC 265 (751)
Q Consensus 187 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~-p~~~~~~~ll~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 265 (751)
.|..+...|++.|++++|+++|++|.+.|+. ++...++.++..+. ..|..++|..+|+.|.. ||..+|+.|+.+
T Consensus 372 ~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~-~~g~~~eAl~lf~~M~~----pd~~Tyn~LL~a 446 (1060)
T PLN03218 372 EYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACK-KQRAVKEAFRFAKLIRN----PTLSTFNMLMSV 446 (1060)
T ss_pred HHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHH-HCCCHHHHHHHHHHcCC----CCHHHHHHHHHH
Confidence 3444445555555555555555555555432 23333333444333 34555555555555543 455555555555
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCHHHH
Q 004470 266 LCRFGKIKEAHLLLLQMELRGCSPDVVSFSTIINGYCYLGELQRVLKLIEEMQIKGLKPNPYTYNSVVRLLCKTSKVVEA 345 (751)
Q Consensus 266 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A 345 (751)
|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..||+.+|.+|++.|++++|
T Consensus 447 ~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeA 526 (1060)
T PLN03218 447 CASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKA 526 (1060)
T ss_pred HHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHH
Confidence 55555555555555555555555555555555555555555555555555555555555555555555555555555555
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 004470 346 ETILREMMNQGIVPDNVIYTTLIDGFCKMGNVAAAYRLFDEMRG--LNIIPDLLTYTAIICGFCLTGKMVEAEKLFHEML 423 (751)
Q Consensus 346 ~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 423 (751)
.++|++|.+.|+.||..+|+.||.+|++.|++++|.++|++|.. .|+.||..+|+.+|.+|++.|++++|.++|++|.
T Consensus 527 l~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~ 606 (1060)
T PLN03218 527 FGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIH 606 (1060)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 55555555555555555555555555555555555555555543 3445555555555555555555555555555555
Q ss_pred HCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHH
Q 004470 424 GRGLEPDEIVYTALIDGYCKAGGMKKAFSLHNNMVHMRLTPNVVTYTALADGLCKSGELETANELLHEMCRKGLQLNIYT 503 (751)
Q Consensus 424 ~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~ 503 (751)
+.|+.|+..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.+++++|.+.|+.||..+
T Consensus 607 e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~t 686 (1060)
T PLN03218 607 EYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVS 686 (1060)
T ss_pred HcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHH
Confidence 55555555555555555555555555555555555555555555555555555555555555555555555555555555
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 004470 504 YNSIVNGLCKAGNILQAVKLMEDMEVAGFHPDTFTYTTIMDAYCKSGEMVKAHELLRDMLDKGLQPSVVTFNVLMNGFCM 583 (751)
Q Consensus 504 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~ 583 (751)
|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++
T Consensus 687 ynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k 766 (1060)
T PLN03218 687 YSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASER 766 (1060)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Confidence 55555555555555555555555555555555555555555555555555555555555555555555555555555555
Q ss_pred cCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 004470 584 SGMIEDGEKLLKWMLEKGLKPNAATYNPLIKQHCLRNDMRTTAKIYKGMCAQGITPDGNTYNILLQGHCKARNMKEAWFL 663 (751)
Q Consensus 584 ~g~~~~A~~l~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~ 663 (751)
.|++++|.+++.+|.+.|+.||..+|++++..|. +++++|.++.+.+...+ + .......+..++|..+
T Consensus 767 ~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~--~~y~ka~~l~~~v~~f~--~--------g~~~~~n~w~~~Al~l 834 (1060)
T PLN03218 767 KDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCL--RRFEKACALGEPVVSFD--S--------GRPQIENKWTSWALMV 834 (1060)
T ss_pred CCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH--HHHHHHhhhhhhhhhhh--c--------cccccccchHHHHHHH
Confidence 5555555555555555555555555555543321 12333333322222110 0 0000111234679999
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCC
Q 004470 664 HKEMVQKGFNLTTSSYNALIKGFLKRKKYLEARELFEEMRRGGLVADREIYYFFVDINFEEGNTEITLELCDAAIECYLV 743 (751)
Q Consensus 664 ~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 743 (751)
|++|++.|+.||..+|+.++.++++.+..+.+..+++.|...+..|+..+|+.+++++.+. .++|..++++|.+.|+.
T Consensus 835 f~eM~~~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~~~~~~~~~y~~Li~g~~~~--~~~A~~l~~em~~~Gi~ 912 (1060)
T PLN03218 835 YRETISAGTLPTMEVLSQVLGCLQLPHDATLRNRLIENLGISADSQKQSNLSTLVDGFGEY--DPRAFSLLEEAASLGVV 912 (1060)
T ss_pred HHHHHHCCCCCCHHHHHHHHHHhcccccHHHHHHHHHHhccCCCCcchhhhHHHHHhhccC--hHHHHHHHHHHHHcCCC
Confidence 9999999999999999999988889999999999999988888889999999999987432 36899999999999998
Q ss_pred CCCc
Q 004470 744 GKAT 747 (751)
Q Consensus 744 ~~~~ 747 (751)
|...
T Consensus 913 p~~~ 916 (1060)
T PLN03218 913 PSVS 916 (1060)
T ss_pred CCcc
Confidence 8764
No 3
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=1.1e-71 Score=648.34 Aligned_cols=589 Identities=17% Similarity=0.202 Sum_probs=519.7
Q ss_pred CCChhHHHHHHHHHHhcCChHHHHHHHHHHHcCCCCCchhhhHHHHHH------------HHHh--hhcCCCChhhHHHH
Q 004470 126 EPILEARCIVVQISVAAKDLKTAHGLIHDFWAKPNLDASIAFTHFVER------------LIYT--YKDWGSDPHVFDIF 191 (751)
Q Consensus 126 ~~~~~~~~~~~~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~------------l~~~--~~~~~~~~~~~~~l 191 (751)
+++..++..++..+.+.|++++|..++.++...+..+....+..++.. +... -.....+..+++.|
T Consensus 48 ~~~~~~~n~~i~~l~~~g~~~~A~~l~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~n~l 127 (857)
T PLN03077 48 SSSTHDSNSQLRALCSHGQLEQALKLLESMQELRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHPSLGVRLGNAM 127 (857)
T ss_pred ccchhhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhhCCCHHHHHHHHHHHHHcCCCCCchHHHHH
Confidence 456677888899999999999999999999875422111111111111 0000 01223456678889
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCCCccCHHhHHHHHHHHHhCCCCHHHHHHHHHhchhcCCCcCHHHHHHHHHHHHhcCC
Q 004470 192 FQVLVEARKLNEARKLFEKLLNYGLVISVDSCNLFLSRLSNTCDGLRMVVKSFTEFPELGICWNTASYNIMIHCLCRFGK 271 (751)
Q Consensus 192 ~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 271 (751)
+..|++.|++++|.++|++|. .||..+||.++..+. +.|++++|+++|++|...|+.||.+||+.++.++++.++
T Consensus 128 i~~~~~~g~~~~A~~~f~~m~----~~d~~~~n~li~~~~-~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~ 202 (857)
T PLN03077 128 LSMFVRFGELVHAWYVFGKMP----ERDLFSWNVLVGGYA-KAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPD 202 (857)
T ss_pred HHHHHhCCChHHHHHHHhcCC----CCCeeEHHHHHHHHH-hCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccc
Confidence 999999999999999999886 478889999999887 578999999999999988999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHH
Q 004470 272 IKEAHLLLLQMELRGCSPDVVSFSTIINGYCYLGELQRVLKLIEEMQIKGLKPNPYTYNSVVRLLCKTSKVVEAETILRE 351 (751)
Q Consensus 272 ~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 351 (751)
++.+.+++..|.+.|+.||..+||+||.+|++.|++++|.++|++|. .||..+||.+|.+|++.|+.++|.++|++
T Consensus 203 ~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~----~~d~~s~n~li~~~~~~g~~~eAl~lf~~ 278 (857)
T PLN03077 203 LARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMP----RRDCISWNAMISGYFENGECLEGLELFFT 278 (857)
T ss_pred hhhHHHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCC----CCCcchhHHHHHHHHhCCCHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999886 36888999999999999999999999999
Q ss_pred HHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH
Q 004470 352 MMNQGIVPDNVIYTTLIDGFCKMGNVAAAYRLFDEMRGLNIIPDLLTYTAIICGFCLTGKMVEAEKLFHEMLGRGLEPDE 431 (751)
Q Consensus 352 m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~ 431 (751)
|...|+.||..+|+.++.++++.|+++.|.+++..|.+.|..||..+|+.+|.+|++.|++++|.++|++|. .||.
T Consensus 279 M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~----~~d~ 354 (857)
T PLN03077 279 MRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRME----TKDA 354 (857)
T ss_pred HHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCC----CCCe
Confidence 999999999999999999999999999999999999999999999999999999999999999999999885 4688
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 004470 432 IVYTALIDGYCKAGGMKKAFSLHNNMVHMRLTPNVVTYTALADGLCKSGELETANELLHEMCRKGLQLNIYTYNSIVNGL 511 (751)
Q Consensus 432 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~~~~li~~~ 511 (751)
.+|+.+|.+|++.|++++|.++|++|.+.|+.||..||+.++.+|++.|++++|.++++.|.+.|+.|+..+|+.|+++|
T Consensus 355 ~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y 434 (857)
T PLN03077 355 VSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMY 434 (857)
T ss_pred eeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHH
Q 004470 512 CKAGNILQAVKLMEDMEVAGFHPDTFTYTTIMDAYCKSGEMVKAHELLRDMLDKGLQPSVVTFNVLMNGFCMSGMIEDGE 591 (751)
Q Consensus 512 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~ 591 (751)
++.|++++|.++|++|. .+|..+|+++|.+|++.|+.++|.++|++|.. +++||..||+.++.+|++.|..+.+.
T Consensus 435 ~k~g~~~~A~~vf~~m~----~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~ 509 (857)
T PLN03077 435 SKCKCIDKALEVFHNIP----EKDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGK 509 (857)
T ss_pred HHcCCHHHHHHHHHhCC----CCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhH
Confidence 99999999999999886 46788999999999999999999999999986 58899999999999999999999999
Q ss_pred HHHHHHHHcCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 004470 592 KLLKWMLEKGLKPNAATYNPLIKQHCLRNDMRTTAKIYKGMCAQGITPDGNTYNILLQGHCKARNMKEAWFLHKEMVQKG 671 (751)
Q Consensus 592 ~l~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 671 (751)
+++..+.+.|+.+|..++++|+.+|++.|++++|.++|+++ .||..+|+.+|.+|++.|+.++|+++|++|.+.|
T Consensus 510 ~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~-----~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g 584 (857)
T PLN03077 510 EIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH-----EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESG 584 (857)
T ss_pred HHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc-----CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 99999999999999999999999999999999999999887 5799999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH-HCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 004470 672 FNLTTSSYNALIKGFLKRKKYLEARELFEEMR-RGGLVADREIYYFFVDINFEEGNTEITLELCDAA 737 (751)
Q Consensus 672 ~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 737 (751)
+.||..||+.++.+|++.|++++|.++|+.|. +.|+.|+..+|..++++|.+.|++++|.+++++|
T Consensus 585 ~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m 651 (857)
T PLN03077 585 VNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKM 651 (857)
T ss_pred CCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHC
Confidence 99999999999999999999999999999999 6899999999999999999999999999999987
No 4
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=1.1e-70 Score=625.60 Aligned_cols=547 Identities=18% Similarity=0.273 Sum_probs=488.9
Q ss_pred CChHHHHHHHHHHHcCCCCCchhhhHHHHHHHHHhhhcCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCccCHHh
Q 004470 143 KDLKTAHGLIHDFWAKPNLDASIAFTHFVERLIYTYKDWGSDPHVFDIFFQVLVEARKLNEARKLFEKLLNYGLVISVDS 222 (751)
Q Consensus 143 ~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~ 222 (751)
++......++..+++.+... .-..+++.+.. -.-.+.+...+..++..|.+.|.+++|..+|+.|.. |+..+
T Consensus 368 ~~~~~~~~~y~~l~r~G~l~---eAl~Lfd~M~~-~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~----pd~~T 439 (1060)
T PLN03218 368 RKSPEYIDAYNRLLRDGRIK---DCIDLLEDMEK-RGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN----PTLST 439 (1060)
T ss_pred CCchHHHHHHHHHHHCcCHH---HHHHHHHHHHh-CCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC----CCHHH
Confidence 34456666666666554211 11223332211 011234556778899999999999999999999874 99999
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHhchhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH
Q 004470 223 CNLFLSRLSNTCDGLRMVVKSFTEFPELGICWNTASYNIMIHCLCRFGKIKEAHLLLLQMELRGCSPDVVSFSTIINGYC 302 (751)
Q Consensus 223 ~~~ll~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~ 302 (751)
|+.++..+. ..|+++.|.++|++|.+.|+.||..+|+.||.+|++.|++++|.++|++|.+.|+.||.++|+.+|.+|+
T Consensus 440 yn~LL~a~~-k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~ 518 (1060)
T PLN03218 440 FNMLMSVCA-SSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCA 518 (1060)
T ss_pred HHHHHHHHH-hCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 999999998 6899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHH--CCCCCCHHHHHHHHHHHHHcCCHHHH
Q 004470 303 YLGELQRVLKLIEEMQIKGLKPNPYTYNSVVRLLCKTSKVVEAETILREMMN--QGIVPDNVIYTTLIDGFCKMGNVAAA 380 (751)
Q Consensus 303 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~g~~p~~~~~~~li~~~~~~g~~~~A 380 (751)
+.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.. .|+.||..+|++||.+|++.|++++|
T Consensus 519 k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA 598 (1060)
T PLN03218 519 RAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRA 598 (1060)
T ss_pred HCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHH
Confidence 9999999999999999999999999999999999999999999999999986 67899999999999999999999999
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhC
Q 004470 381 YRLFDEMRGLNIIPDLLTYTAIICGFCLTGKMVEAEKLFHEMLGRGLEPDEIVYTALIDGYCKAGGMKKAFSLHNNMVHM 460 (751)
Q Consensus 381 ~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 460 (751)
.++|++|.+.|+.|+..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.+++++|.+.
T Consensus 599 ~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~ 678 (1060)
T PLN03218 599 KEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQ 678 (1060)
T ss_pred HHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 004470 461 RLTPNVVTYTALADGLCKSGELETANELLHEMCRKGLQLNIYTYNSIVNGLCKAGNILQAVKLMEDMEVAGFHPDTFTYT 540 (751)
Q Consensus 461 ~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 540 (751)
|+.|+..+|+.||.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|...|+.||..+|+
T Consensus 679 G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~ 758 (1060)
T PLN03218 679 GIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYS 758 (1060)
T ss_pred CCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHHcC
Q 004470 541 TIMDAYCKSGEMVKAHELLRDMLDKGLQPSVVTFNVLMNGFCMSGMIEDGEKLLKWMLEKGLKPNAATYNPLIKQHCLRN 620 (751)
Q Consensus 541 ~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~g~~p~~~~~~~l~~~~~~~g 620 (751)
.++.+|++.|++++|.+++++|.+.|+.||..+|+.++..|. +++++|..+.+.+..-.. .......+
T Consensus 759 sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~--~~y~ka~~l~~~v~~f~~----------g~~~~~n~ 826 (1060)
T PLN03218 759 ILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCL--RRFEKACALGEPVVSFDS----------GRPQIENK 826 (1060)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH--HHHHHHhhhhhhhhhhhc----------cccccccc
Confidence 999999999999999999999999999999999999986543 246666665544432110 01111223
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 004470 621 DMRTTAKIYKGMCAQGITPDGNTYNILLQGHCKARNMKEAWFLHKEMVQKGFNLTTSSYNALIKGFLKRKKYLEARELFE 700 (751)
Q Consensus 621 ~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 700 (751)
..++|..+|++|++.|+.||..||+.++.++++.+..+.+..++++|...+..|+..+|+++++++++. .++|..+++
T Consensus 827 w~~~Al~lf~eM~~~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~~~~~~~~~y~~Li~g~~~~--~~~A~~l~~ 904 (1060)
T PLN03218 827 WTSWALMVYRETISAGTLPTMEVLSQVLGCLQLPHDATLRNRLIENLGISADSQKQSNLSTLVDGFGEY--DPRAFSLLE 904 (1060)
T ss_pred hHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccccHHHHHHHHHHhccCCCCcchhhhHHHHHhhccC--hHHHHHHHH
Confidence 456799999999999999999999999999889999999999999998888888999999999998532 468999999
Q ss_pred HHHHCCCCCCHH
Q 004470 701 EMRRGGLVADRE 712 (751)
Q Consensus 701 ~~~~~~~~~~~~ 712 (751)
+|.+.|+.|+..
T Consensus 905 em~~~Gi~p~~~ 916 (1060)
T PLN03218 905 EAASLGVVPSVS 916 (1060)
T ss_pred HHHHcCCCCCcc
Confidence 999999999874
No 5
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=1.8e-63 Score=565.95 Aligned_cols=511 Identities=20% Similarity=0.345 Sum_probs=472.1
Q ss_pred ChhhHHHHHHHHHhcCChhHHHHHHHHHHhCC-CccCHHhHHHHHHHHHhCCCCHHHHHHHHHhchhcCCCcCHHHHHHH
Q 004470 184 DPHVFDIFFQVLVEARKLNEARKLFEKLLNYG-LVISVDSCNLFLSRLSNTCDGLRMVVKSFTEFPELGICWNTASYNIM 262 (751)
Q Consensus 184 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g-~~p~~~~~~~ll~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 262 (751)
+...|+.++..|.+.|++++|+++|+.|...+ +.||..+|+.++..+. ..++++.|.+++..+...|+.||+.+||.|
T Consensus 86 ~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~-~~~~~~~a~~l~~~m~~~g~~~~~~~~n~L 164 (697)
T PLN03081 86 SGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACI-ALKSIRCVKAVYWHVESSGFEPDQYMMNRV 164 (697)
T ss_pred CceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHH-hCCCHHHHHHHHHHHHHhCCCcchHHHHHH
Confidence 34578899999999999999999999998764 7899999999999998 679999999999999999999999999999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCH
Q 004470 263 IHCLCRFGKIKEAHLLLLQMELRGCSPDVVSFSTIINGYCYLGELQRVLKLIEEMQIKGLKPNPYTYNSVVRLLCKTSKV 342 (751)
Q Consensus 263 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~ 342 (751)
+.+|++.|++++|.++|++|.+ ||.++||++|.+|++.|++++|+++|++|.+.|+.|+..||+.++.++++.|..
T Consensus 165 i~~y~k~g~~~~A~~lf~~m~~----~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~ 240 (697)
T PLN03081 165 LLMHVKCGMLIDARRLFDEMPE----RNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSA 240 (697)
T ss_pred HHHHhcCCCHHHHHHHHhcCCC----CCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcH
Confidence 9999999999999999999975 899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 004470 343 VEAETILREMMNQGIVPDNVIYTTLIDGFCKMGNVAAAYRLFDEMRGLNIIPDLLTYTAIICGFCLTGKMVEAEKLFHEM 422 (751)
Q Consensus 343 ~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 422 (751)
+.+.+++..+.+.|+.||..+|++||++|++.|++++|.++|++|.. +|.++||.+|.+|++.|+.++|+++|++|
T Consensus 241 ~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~~~vt~n~li~~y~~~g~~~eA~~lf~~M 316 (697)
T PLN03081 241 RAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPE----KTTVAWNSMLAGYALHGYSEEALCLYYEM 316 (697)
T ss_pred HHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCC----CChhHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999975 58999999999999999999999999999
Q ss_pred HHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH
Q 004470 423 LGRGLEPDEIVYTALIDGYCKAGGMKKAFSLHNNMVHMRLTPNVVTYTALADGLCKSGELETANELLHEMCRKGLQLNIY 502 (751)
Q Consensus 423 ~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~ 502 (751)
.+.|+.||..||+.++.+|++.|++++|.+++..|.+.|+.||..+|+.|+++|++.|++++|.++|++|.+ ||..
T Consensus 317 ~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~----~d~~ 392 (697)
T PLN03081 317 RDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPR----KNLI 392 (697)
T ss_pred HHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCC----CCee
Confidence 999999999999999999999999999999999999999999999999999999999999999999999964 6899
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh-CCCCCCHHHHHHHHHHH
Q 004470 503 TYNSIVNGLCKAGNILQAVKLMEDMEVAGFHPDTFTYTTIMDAYCKSGEMVKAHELLRDMLD-KGLQPSVVTFNVLMNGF 581 (751)
Q Consensus 503 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-~~~~p~~~~~~~li~~~ 581 (751)
+||++|.+|++.|+.++|.++|++|.+.|+.||..||+.++.+|++.|++++|.++|+.|.+ .|+.|+..+|+.++++|
T Consensus 393 t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l 472 (697)
T PLN03081 393 SWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELL 472 (697)
T ss_pred eHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999985 69999999999999999
Q ss_pred HhcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHH
Q 004470 582 CMSGMIEDGEKLLKWMLEKGLKPNAATYNPLIKQHCLRNDMRTTAKIYKGMCAQGITP-DGNTYNILLQGHCKARNMKEA 660 (751)
Q Consensus 582 ~~~g~~~~A~~l~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~A 660 (751)
++.|++++|.+++++| +..|+..+|++++.+|+..|+++.|..+++++.+ +.| +..+|..|++.|++.|++++|
T Consensus 473 ~r~G~~~eA~~~~~~~---~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~--~~p~~~~~y~~L~~~y~~~G~~~~A 547 (697)
T PLN03081 473 GREGLLDEAYAMIRRA---PFKPTVNMWAALLTACRIHKNLELGRLAAEKLYG--MGPEKLNNYVVLLNLYNSSGRQAEA 547 (697)
T ss_pred HhcCCHHHHHHHHHHC---CCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhC--CCCCCCcchHHHHHHHHhCCCHHHH
Confidence 9999999999998765 6789999999999999999999999999999976 445 477899999999999999999
Q ss_pred HHHHHHHHHCCCCCCH-HHHHHHH---HHHH--------hcCCHHHHHHHHHHHHHCCCCCCHH
Q 004470 661 WFLHKEMVQKGFNLTT-SSYNALI---KGFL--------KRKKYLEARELFEEMRRGGLVADRE 712 (751)
Q Consensus 661 ~~~~~~~~~~~~~p~~-~~~~~l~---~~~~--------~~g~~~~A~~~~~~~~~~~~~~~~~ 712 (751)
.+++++|.+.|+...+ .+|..+. ..+. ...-++...++.++|.+.|..||..
T Consensus 548 ~~v~~~m~~~g~~k~~g~s~i~~~~~~~~f~~~d~~h~~~~~i~~~l~~l~~~~~~~gy~~~~~ 611 (697)
T PLN03081 548 AKVVETLKRKGLSMHPACTWIEVKKQDHSFFSGDRLHPQSREIYQKLDELMKEISEYGYVAEEN 611 (697)
T ss_pred HHHHHHHHHcCCccCCCeeEEEECCeEEEEccCCCCCccHHHHHHHHHHHHHHHHHcCCCCCcc
Confidence 9999999999876432 2332111 0000 0112455667888888899888754
No 6
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=9.2e-63 Score=560.08 Aligned_cols=473 Identities=20% Similarity=0.299 Sum_probs=326.7
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHH
Q 004470 255 NTASYNIMIHCLCRFGKIKEAHLLLLQMELRG-CSPDVVSFSTIINGYCYLGELQRVLKLIEEMQIKGLKPNPYTYNSVV 333 (751)
Q Consensus 255 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li 333 (751)
+..+|+.+|.+|.+.|++++|+++|+.|...+ +.||..+|+.++.+|++.++++.|.+++..|.+.|+.||..+|+.++
T Consensus 86 ~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~Li 165 (697)
T PLN03081 86 SGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVL 165 (697)
T ss_pred CceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHHH
Confidence 44456666666666777777777776666543 55666777777777777777777777777776666666777777777
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHH
Q 004470 334 RLLCKTSKVVEAETILREMMNQGIVPDNVIYTTLIDGFCKMGNVAAAYRLFDEMRGLNIIPDLLTYTAIICGFCLTGKMV 413 (751)
Q Consensus 334 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~ 413 (751)
.+|++.|++++|.++|++|. .||..+|+++|.+|++.|++++|.++|++|.+.|+.|+..+|+.++.++++.|..+
T Consensus 166 ~~y~k~g~~~~A~~lf~~m~----~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~ 241 (697)
T PLN03081 166 LMHVKCGMLIDARRLFDEMP----ERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSAR 241 (697)
T ss_pred HHHhcCCCHHHHHHHHhcCC----CCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHH
Confidence 77777777777777776664 25666777777777777777777777777766666677777777777777777777
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 004470 414 EAEKLFHEMLGRGLEPDEIVYTALIDGYCKAGGMKKAFSLHNNMVHMRLTPNVVTYTALADGLCKSGELETANELLHEMC 493 (751)
Q Consensus 414 ~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 493 (751)
.+.+++..+.+.|+.||..+|+.|+++|++.|++++|.++|++|.+ +|+++|+.++.+|++.|++++|.++|++|.
T Consensus 242 ~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~~~vt~n~li~~y~~~g~~~eA~~lf~~M~ 317 (697)
T PLN03081 242 AGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPE----KTTVAWNSMLAGYALHGYSEEALCLYYEMR 317 (697)
T ss_pred HHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCC----CChhHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 7777777666666667777777777777777777777777766643 466677777777777777777777777777
Q ss_pred HcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHH
Q 004470 494 RKGLQLNIYTYNSIVNGLCKAGNILQAVKLMEDMEVAGFHPDTFTYTTIMDAYCKSGEMVKAHELLRDMLDKGLQPSVVT 573 (751)
Q Consensus 494 ~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~ 573 (751)
+.|+.||..||+.++.+|++.|++++|.+++..|.+.|+.||..+|++|+++|++.|++++|.++|++|. .||..+
T Consensus 318 ~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~----~~d~~t 393 (697)
T PLN03081 318 DSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMP----RKNLIS 393 (697)
T ss_pred HcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCC----CCCeee
Confidence 7777777777777777777777777777777777777777777777777777777777777777777664 346667
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHH-CCCCCCHHHHHHHHHHHH
Q 004470 574 FNVLMNGFCMSGMIEDGEKLLKWMLEKGLKPNAATYNPLIKQHCLRNDMRTTAKIYKGMCA-QGITPDGNTYNILLQGHC 652 (751)
Q Consensus 574 ~~~li~~~~~~g~~~~A~~l~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~-~g~~p~~~~~~~li~~~~ 652 (751)
||.||.+|++.|+.++|.++|++|.+.|+.||..||+.++.+|++.|++++|.++|+.|.+ .|+.|+..+|+.++++|+
T Consensus 394 ~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~ 473 (697)
T PLN03081 394 WNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLG 473 (697)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHH
Confidence 7777777777777777777777777777777777777777777777777777777777764 466677777777777777
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHH
Q 004470 653 KARNMKEAWFLHKEMVQKGFNLTTSSYNALIKGFLKRKKYLEARELFEEMRRGGLVADREIYYFFVDINFEEGNTEITLE 732 (751)
Q Consensus 653 ~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 732 (751)
+.|++++|.+++++| +..|+..+|+.|+.+|...|+++.|..+++++.+.+ +.+..+|..+++.|.+.|++++|.+
T Consensus 474 r~G~~~eA~~~~~~~---~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~-p~~~~~y~~L~~~y~~~G~~~~A~~ 549 (697)
T PLN03081 474 REGLLDEAYAMIRRA---PFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMG-PEKLNNYVVLLNLYNSSGRQAEAAK 549 (697)
T ss_pred hcCCHHHHHHHHHHC---CCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCC-CCCCcchHHHHHHHHhCCCHHHHHH
Confidence 777777777766654 456677777777777777777777777777665432 2345566677777777777777777
Q ss_pred HHHHHHHcCCC
Q 004470 733 LCDAAIECYLV 743 (751)
Q Consensus 733 ~~~~~~~~~~~ 743 (751)
++++|.++|+.
T Consensus 550 v~~~m~~~g~~ 560 (697)
T PLN03081 550 VVETLKRKGLS 560 (697)
T ss_pred HHHHHHHcCCc
Confidence 77777776653
No 7
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=6.1e-39 Score=382.49 Aligned_cols=624 Identities=13% Similarity=0.065 Sum_probs=527.9
Q ss_pred hHHHHHHHhhcCChHHHHHHHHhhhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHcCCCCCchhhh----------
Q 004470 98 DHLIWVLMDIRSDYRLVLDFFDWACLRREPILEARCIVVQISVAAKDLKTAHGLIHDFWAKPNLDASIAF---------- 167 (751)
Q Consensus 98 ~~~~~~l~~~~~~~~~al~~f~~~~~~~~~~~~~~~~~~~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~---------- 167 (751)
......+....++++.|+..|+.+....+.+..+...++.++...|++++|...+.+++.....+.....
T Consensus 264 ~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g 343 (899)
T TIGR02917 264 HYLKALVDFQKKNYEDARETLQDALKSAPEYLPALLLAGASEYQLGNLEQAYQYLNQILKYAPNSHQARRLLASIQLRLG 343 (899)
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHCC
Confidence 3344455566789999999999998888877778888888899999999999999998876422211000
Q ss_pred --HHHHHHHHHhhhcCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCccCHHhHHHHHHHHHhCCCCHHHHHHHHH
Q 004470 168 --THFVERLIYTYKDWGSDPHVFDIFFQVLVEARKLNEARKLFEKLLNYGLVISVDSCNLFLSRLSNTCDGLRMVVKSFT 245 (751)
Q Consensus 168 --~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~l~~~~~~~~~a~~~~~ 245 (751)
......+-......|.++.++..++.++.+.|++++|.++|+++.+. .|+.......++.+....|++++|.+.|+
T Consensus 344 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 421 (899)
T TIGR02917 344 RVDEAIATLSPALGLDPDDPAALSLLGEAYLALGDFEKAAEYLAKATEL--DPENAAARTQLGISKLSQGDPSEAIADLE 421 (899)
T ss_pred CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHhCCChHHHHHHHH
Confidence 00111111122334667788999999999999999999999999886 56665555566666667899999999999
Q ss_pred hchhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 004470 246 EFPELGICWNTASYNIMIHCLCRFGKIKEAHLLLLQMELRGCSPDVVSFSTIINGYCYLGELQRVLKLIEEMQIKGLKPN 325 (751)
Q Consensus 246 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 325 (751)
++.+..+. +......++..+.+.|++++|..+++++... .+++..+|..+...+...|++++|.+.|+++.+.. +.+
T Consensus 422 ~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~ 498 (899)
T TIGR02917 422 TAAQLDPE-LGRADLLLILSYLRSGQFDKALAAAKKLEKK-QPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIE-PDF 498 (899)
T ss_pred HHHhhCCc-chhhHHHHHHHHHhcCCHHHHHHHHHHHHHh-CCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC-CCc
Confidence 99887654 4556677888999999999999999998875 34577889999999999999999999999998764 345
Q ss_pred cccHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 004470 326 PYTYNSVVRLLCKTSKVVEAETILREMMNQGIVPDNVIYTTLIDGFCKMGNVAAAYRLFDEMRGLNIIPDLLTYTAIICG 405 (751)
Q Consensus 326 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~ 405 (751)
...+..+...+...|++++|.+.++++...+ +.+..++..+...+.+.|+.++|...++++...+.. +...+..++..
T Consensus 499 ~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~ 576 (899)
T TIGR02917 499 FPAAANLARIDIQEGNPDDAIQRFEKVLTID-PKNLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQ-EIEPALALAQY 576 (899)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-chhHHHHHHHH
Confidence 6778889999999999999999999998874 457788999999999999999999999999877543 67788889999
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 004470 406 FCLTGKMVEAEKLFHEMLGRGLEPDEIVYTALIDGYCKAGGMKKAFSLHNNMVHMRLTPNVVTYTALADGLCKSGELETA 485 (751)
Q Consensus 406 ~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 485 (751)
+...|++++|..+++.+... .+.+...|..++..+...|++++|...++++.+..+ .+...+..+...+.+.|++++|
T Consensus 577 ~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A 654 (899)
T TIGR02917 577 YLGKGQLKKALAILNEAADA-APDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQP-DSALALLLLADAYAVMKNYAKA 654 (899)
T ss_pred HHHCCCHHHHHHHHHHHHHc-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHcCCHHHH
Confidence 99999999999999999876 355788999999999999999999999999988653 3677889999999999999999
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Q 004470 486 NELLHEMCRKGLQLNIYTYNSIVNGLCKAGNILQAVKLMEDMEVAGFHPDTFTYTTIMDAYCKSGEMVKAHELLRDMLDK 565 (751)
Q Consensus 486 ~~l~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 565 (751)
...++++.+.. +.+..++..++..+...|++++|..+++.+.+.+ +.+...+..+...+.+.|++++|.+.|+.+.+.
T Consensus 655 ~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~ 732 (899)
T TIGR02917 655 ITSLKRALELK-PDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQH-PKAALGFELEGDLYLRQKDYPAAIQAYRKALKR 732 (899)
T ss_pred HHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhh
Confidence 99999998874 3367889999999999999999999999998876 677888899999999999999999999999986
Q ss_pred CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 004470 566 GLQPSVVTFNVLMNGFCMSGMIEDGEKLLKWMLEKGLKPNAATYNPLIKQHCLRNDMRTTAKIYKGMCAQGITPDGNTYN 645 (751)
Q Consensus 566 ~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~ 645 (751)
+ |+..++..++..+.+.|++++|.+.++++.+.. +.+...+..+...|...|+.++|.+.|+++.+.. +++...++
T Consensus 733 ~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~ 808 (899)
T TIGR02917 733 A--PSSQNAIKLHRALLASGNTAEAVKTLEAWLKTH-PNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKA-PDNAVVLN 808 (899)
T ss_pred C--CCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhC-CCCHHHHH
Confidence 4 455778889999999999999999999999874 4477888999999999999999999999999864 45788899
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 004470 646 ILLQGHCKARNMKEAWFLHKEMVQKGFNLTTSSYNALIKGFLKRKKYLEARELFEEMRRGGLVADREIYYFFVDINFEEG 725 (751)
Q Consensus 646 ~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 725 (751)
.++..+...|+ .+|+..++++.+..+. ++.++..++..+...|++++|.++++++++.+ +.++.++..++..+.+.|
T Consensus 809 ~l~~~~~~~~~-~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~g 885 (899)
T TIGR02917 809 NLAWLYLELKD-PRALEYAEKALKLAPN-IPAILDTLGWLLVEKGEADRALPLLRKAVNIA-PEAAAIRYHLALALLATG 885 (899)
T ss_pred HHHHHHHhcCc-HHHHHHHHHHHhhCCC-CcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCChHHHHHHHHHHHHcC
Confidence 99999999999 8899999999987554 67788899999999999999999999999976 458999999999999999
Q ss_pred ChhHHHHHHHHHHH
Q 004470 726 NTEITLELCDAAIE 739 (751)
Q Consensus 726 ~~~~A~~~~~~~~~ 739 (751)
+.++|.++++++++
T Consensus 886 ~~~~A~~~~~~~~~ 899 (899)
T TIGR02917 886 RKAEARKELDKLLN 899 (899)
T ss_pred CHHHHHHHHHHHhC
Confidence 99999999999874
No 8
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=7.6e-38 Score=373.06 Aligned_cols=621 Identities=12% Similarity=0.048 Sum_probs=526.2
Q ss_pred HhhcCChHHHHHHHHhhhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHcCCCCCchhhh------------HHHHH
Q 004470 105 MDIRSDYRLVLDFFDWACLRREPILEARCIVVQISVAAKDLKTAHGLIHDFWAKPNLDASIAF------------THFVE 172 (751)
Q Consensus 105 ~~~~~~~~~al~~f~~~~~~~~~~~~~~~~~~~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~------------~~~~~ 172 (751)
....++.+.|...|+.+....|.+.......+.+....|++++|...++++++.......... .....
T Consensus 237 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~g~~~~A~~ 316 (899)
T TIGR02917 237 LIEAGEFEEAEKHADALLKKAPNSPLAHYLKALVDFQKKNYEDARETLQDALKSAPEYLPALLLAGASEYQLGNLEQAYQ 316 (899)
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHcCCHHHHHH
Confidence 345688999999999998888877788888888889999999999999999876532110000 00111
Q ss_pred HHHHhhhcCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCccCHHhHHHHHHHHHhCCCCHHHHHHHHHhchhcCC
Q 004470 173 RLIYTYKDWGSDPHVFDIFFQVLVEARKLNEARKLFEKLLNYGLVISVDSCNLFLSRLSNTCDGLRMVVKSFTEFPELGI 252 (751)
Q Consensus 173 ~l~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~l~~~~~~~~~a~~~~~~~~~~~~ 252 (751)
.+-......|.++.++..++..+.+.|++++|...+.++.... |+.......++..+...|++++|.++|+++.+..+
T Consensus 317 ~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 394 (899)
T TIGR02917 317 YLNQILKYAPNSHQARRLLASIQLRLGRVDEAIATLSPALGLD--PDDPAALSLLGEAYLALGDFEKAAEYLAKATELDP 394 (899)
T ss_pred HHHHHHHhCCCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC
Confidence 1111223346777888899999999999999999999998763 44333333444444578999999999999988765
Q ss_pred CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHH
Q 004470 253 CWNTASYNIMIHCLCRFGKIKEAHLLLLQMELRGCSPDVVSFSTIINGYCYLGELQRVLKLIEEMQIKGLKPNPYTYNSV 332 (751)
Q Consensus 253 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l 332 (751)
. +...+..+...+...|++++|.+.|+++.+.+. .+...+..++..+.+.|++++|.++++++... .+++..++..+
T Consensus 395 ~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~l 471 (899)
T TIGR02917 395 E-NAAARTQLGISKLSQGDPSEAIADLETAAQLDP-ELGRADLLLILSYLRSGQFDKALAAAKKLEKK-QPDNASLHNLL 471 (899)
T ss_pred C-CHHHHHHHHHHHHhCCChHHHHHHHHHHHhhCC-cchhhHHHHHHHHHhcCCHHHHHHHHHHHHHh-CCCCcHHHHHH
Confidence 4 777888899999999999999999999887653 23455667888899999999999999999876 35578889999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH
Q 004470 333 VRLLCKTSKVVEAETILREMMNQGIVPDNVIYTTLIDGFCKMGNVAAAYRLFDEMRGLNIIPDLLTYTAIICGFCLTGKM 412 (751)
Q Consensus 333 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~ 412 (751)
...+...|++++|.+.|+++.+.. +.+...+..++..+...|++++|.+.++++.+.++. +..++..+...+...|+.
T Consensus 472 ~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~ 549 (899)
T TIGR02917 472 GAIYLGKGDLAKAREAFEKALSIE-PDFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDPK-NLRAILALAGLYLRTGNE 549 (899)
T ss_pred HHHHHhCCCHHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHHHHcCCH
Confidence 999999999999999999998864 446678888999999999999999999999887644 788899999999999999
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 004470 413 VEAEKLFHEMLGRGLEPDEIVYTALIDGYCKAGGMKKAFSLHNNMVHMRLTPNVVTYTALADGLCKSGELETANELLHEM 492 (751)
Q Consensus 413 ~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m 492 (751)
++|...++++...+ +.+...+..++..+.+.|++++|..+++.+.+.. +.+..+|..++..+.+.|++++|...++.+
T Consensus 550 ~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 627 (899)
T TIGR02917 550 EEAVAWLEKAAELN-PQEIEPALALAQYYLGKGQLKKALAILNEAADAA-PDSPEAWLMLGRAQLAAGDLNKAVSSFKKL 627 (899)
T ss_pred HHHHHHHHHHHHhC-ccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 99999999998764 4467788889999999999999999999998764 347889999999999999999999999999
Q ss_pred HHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHH
Q 004470 493 CRKGLQLNIYTYNSIVNGLCKAGNILQAVKLMEDMEVAGFHPDTFTYTTIMDAYCKSGEMVKAHELLRDMLDKGLQPSVV 572 (751)
Q Consensus 493 ~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~ 572 (751)
.+... .+...+..+..++.+.|++++|...++++.+.. +.+..++..++..+...|++++|.++++.+.+.+ +.+..
T Consensus 628 ~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~ 704 (899)
T TIGR02917 628 LALQP-DSALALLLLADAYAVMKNYAKAITSLKRALELK-PDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQH-PKAAL 704 (899)
T ss_pred HHhCC-CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCChH
Confidence 88753 367788899999999999999999999998875 6678899999999999999999999999999875 66788
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 004470 573 TFNVLMNGFCMSGMIEDGEKLLKWMLEKGLKPNAATYNPLIKQHCLRNDMRTTAKIYKGMCAQGITPDGNTYNILLQGHC 652 (751)
Q Consensus 573 ~~~~li~~~~~~g~~~~A~~l~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~ 652 (751)
.+..+...+...|++++|.+.++++...+ |+..++..++..+...|+.++|.+.++++.+.. +.+...+..+...|.
T Consensus 705 ~~~~~~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~ 781 (899)
T TIGR02917 705 GFELEGDLYLRQKDYPAAIQAYRKALKRA--PSSQNAIKLHRALLASGNTAEAVKTLEAWLKTH-PNDAVLRTALAELYL 781 (899)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhhC--CCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence 89999999999999999999999999864 555778889999999999999999999999864 457888999999999
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHH
Q 004470 653 KARNMKEAWFLHKEMVQKGFNLTTSSYNALIKGFLKRKKYLEARELFEEMRRGGLVADREIYYFFVDINFEEGNTEITLE 732 (751)
Q Consensus 653 ~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 732 (751)
+.|++++|...|+++++..+. ++.++..+++.+...|+ .+|+.+++++.+.. +.++..+..++..+...|++++|.+
T Consensus 782 ~~g~~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~ 858 (899)
T TIGR02917 782 AQKDYDKAIKHYRTVVKKAPD-NAVVLNNLAWLYLELKD-PRALEYAEKALKLA-PNIPAILDTLGWLLVEKGEADRALP 858 (899)
T ss_pred HCcCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHH
Confidence 999999999999999998654 88899999999999999 88999999999864 5577788899999999999999999
Q ss_pred HHHHHHHcCCC
Q 004470 733 LCDAAIECYLV 743 (751)
Q Consensus 733 ~~~~~~~~~~~ 743 (751)
.++++++.+..
T Consensus 859 ~~~~a~~~~~~ 869 (899)
T TIGR02917 859 LLRKAVNIAPE 869 (899)
T ss_pred HHHHHHhhCCC
Confidence 99999998765
No 9
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=100.00 E-value=4.9e-29 Score=297.52 Aligned_cols=614 Identities=13% Similarity=0.054 Sum_probs=417.5
Q ss_pred hhcCChHHHHHHHHhhhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHcCCCCCchhhhHHHHHHHHHhhhcCCCCh
Q 004470 106 DIRSDYRLVLDFFDWACLRREPILEARCIVVQISVAAKDLKTAHGLIHDFWAKPNLDASIAFTHFVERLIYTYKDWGSDP 185 (751)
Q Consensus 106 ~~~~~~~~al~~f~~~~~~~~~~~~~~~~~~~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 185 (751)
.-+++++.|.+.++.+....|.+...+..++.++...|+.++|...++++.+....+ +........ +..-+.+.
T Consensus 39 ~~~~~~d~a~~~l~kl~~~~p~~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~~P~~---~~~~~~~~~---~~~~~~~~ 112 (1157)
T PRK11447 39 EATHREDLVRQSLYRLELIDPNNPDVIAARFRLLLRQGDSDGAQKLLDRLSQLAPDS---NAYRSSRTT---MLLSTPEG 112 (1157)
T ss_pred HhhCChHHHHHHHHHHHccCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCC---hHHHHHHHH---HHhcCCch
Confidence 356789999999999998899999999999999999999999999999999875221 111111111 11113344
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHhCCCccCHHhHHHHHHHHHhCCCCHHHHHHHHHhchhcCCCcCHHHHHHHHHH
Q 004470 186 HVFDIFFQVLVEARKLNEARKLFEKLLNYGLVISVDSCNLFLSRLSNTCDGLRMVVKSFTEFPELGICWNTASYNIMIHC 265 (751)
Q Consensus 186 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 265 (751)
.....+++.+.+.|++++|++.|+++.+.. .|+..........+....|+.++|++.|+++.+..|. +...+..+...
T Consensus 113 ~~~l~~A~ll~~~g~~~eA~~~~~~~l~~~-p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~P~-~~~~~~~LA~l 190 (1157)
T PRK11447 113 RQALQQARLLATTGRTEEALASYDKLFNGA-PPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADYPG-NTGLRNTLALL 190 (1157)
T ss_pred hhHHHHHHHHHhCCCHHHHHHHHHHHccCC-CCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhCCC-CHHHHHHHHHH
Confidence 456778889999999999999999999764 2332222223333333469999999999999998765 78888999999
Q ss_pred HHhcCCHHHHHHHHHHHHhcCC------------------CCC-HHHHH-------------------------------
Q 004470 266 LCRFGKIKEAHLLLLQMELRGC------------------SPD-VVSFS------------------------------- 295 (751)
Q Consensus 266 ~~~~g~~~~A~~~~~~m~~~g~------------------~p~-~~~~~------------------------------- 295 (751)
+.+.|+.++|+..|+++..... .+. ...+.
T Consensus 191 l~~~g~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~ 270 (1157)
T PRK11447 191 LFSSGRRDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPAF 270 (1157)
T ss_pred HHccCCHHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcch
Confidence 9999999999999999865321 000 00011
Q ss_pred ---HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHH-------
Q 004470 296 ---TIINGYCYLGELQRVLKLIEEMQIKGLKPNPYTYNSVVRLLCKTSKVVEAETILREMMNQGIVP-DNVIY------- 364 (751)
Q Consensus 296 ---~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~------- 364 (751)
.....+...|++++|+..|++..+.. +.+..++..+...+.+.|++++|+..|++.++..... ....+
T Consensus 271 ~~~~~G~~~~~~g~~~~A~~~l~~aL~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~ 349 (1157)
T PRK11447 271 RARAQGLAAVDSGQGGKAIPELQQAVRAN-PKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVN 349 (1157)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhh
Confidence 11223445566666666666666542 2245566666666666666666666666666542111 11111
Q ss_pred -----HHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 004470 365 -----TTLIDGFCKMGNVAAAYRLFDEMRGLNIIPDLLTYTAIICGFCLTGKMVEAEKLFHEMLGRGLEPDEIVYTALID 439 (751)
Q Consensus 365 -----~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~ 439 (751)
..+...+.+.|++++|...|+++.+..+. +...+..+...+...|++++|++.|+++++.. +.+...+..+..
T Consensus 350 ~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~P~-~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~-p~~~~a~~~L~~ 427 (1157)
T PRK11447 350 RYWLLIQQGDAALKANNLAQAERLYQQARQVDNT-DSYAVLGLGDVAMARKDYAAAERYYQQALRMD-PGNTNAVRGLAN 427 (1157)
T ss_pred hHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 11233455666666666666666665432 44555556666666666666666666666542 223444445555
Q ss_pred HHHHcCChhHHHHHHHHHHhCCCC--------CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 004470 440 GYCKAGGMKKAFSLHNNMVHMRLT--------PNVVTYTALADGLCKSGELETANELLHEMCRKGLQLNIYTYNSIVNGL 511 (751)
Q Consensus 440 ~~~~~g~~~~A~~~~~~~~~~~~~--------~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~~~~li~~~ 511 (751)
.|. .++.++|..+++.+...... .....+..+...+...|++++|++.+++..+..+. +...+..+...+
T Consensus 428 l~~-~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~-~~~~~~~LA~~~ 505 (1157)
T PRK11447 428 LYR-QQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPG-SVWLTYRLAQDL 505 (1157)
T ss_pred HHH-hcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHH
Confidence 443 34556666665544321100 01123444556667778888888888888776433 566677777788
Q ss_pred HHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHH---------HHHHHHHHHH
Q 004470 512 CKAGNILQAVKLMEDMEVAGFHPDTFTYTTIMDAYCKSGEMVKAHELLRDMLDKGLQPSVV---------TFNVLMNGFC 582 (751)
Q Consensus 512 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~---------~~~~li~~~~ 582 (751)
.+.|++++|...++++.+.. +.+...+..+...+...++.++|...++.+......++.. .+..+...+.
T Consensus 506 ~~~G~~~~A~~~l~~al~~~-P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~ 584 (1157)
T PRK11447 506 RQAGQRSQADALMRRLAQQK-PNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLR 584 (1157)
T ss_pred HHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHH
Confidence 88888888888888877653 3455555555555667788888888777654332222211 1234456677
Q ss_pred hcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 004470 583 MSGMIEDGEKLLKWMLEKGLKPNAATYNPLIKQHCLRNDMRTTAKIYKGMCAQGITPDGNTYNILLQGHCKARNMKEAWF 662 (751)
Q Consensus 583 ~~g~~~~A~~l~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~ 662 (751)
..|+.++|..+++. .+++...+..+...+...|+.++|++.|++.++.. +.+...+..++..|...|++++|++
T Consensus 585 ~~G~~~eA~~~l~~-----~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~-P~~~~a~~~la~~~~~~g~~~eA~~ 658 (1157)
T PRK11447 585 DSGKEAEAEALLRQ-----QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTRE-PGNADARLGLIEVDIAQGDLAAARA 658 (1157)
T ss_pred HCCCHHHHHHHHHh-----CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 88899999888772 23455677788899999999999999999999863 3367888999999999999999999
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC--CC---CHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 004470 663 LHKEMVQKGFNLTTSSYNALIKGFLKRKKYLEARELFEEMRRGGL--VA---DREIYYFFVDINFEEGNTEITLELCDAA 737 (751)
Q Consensus 663 ~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 737 (751)
.++.+.+..+. +..++..++.++...|++++|.+++++++.... +| +...+..++..+...|+.++|++.|+++
T Consensus 659 ~l~~ll~~~p~-~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~A 737 (1157)
T PRK11447 659 QLAKLPATAND-SLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDA 737 (1157)
T ss_pred HHHHHhccCCC-ChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 99998876443 667788899999999999999999999987532 22 2356667788999999999999999999
Q ss_pred HHc
Q 004470 738 IEC 740 (751)
Q Consensus 738 ~~~ 740 (751)
+..
T Consensus 738 l~~ 740 (1157)
T PRK11447 738 MVA 740 (1157)
T ss_pred Hhh
Confidence 863
No 10
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=100.00 E-value=2.6e-27 Score=282.76 Aligned_cols=577 Identities=12% Similarity=0.021 Sum_probs=418.2
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHHHHcCCCCCchhhhHHHHHHHHHhhhcCCCChhhHHHHHHHHHhcCChhHHHHH
Q 004470 128 ILEARCIVVQISVAAKDLKTAHGLIHDFWAKPNLDASIAFTHFVERLIYTYKDWGSDPHVFDIFFQVLVEARKLNEARKL 207 (751)
Q Consensus 128 ~~~~~~~~~~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 207 (751)
....+...+++....++.+.|+..|.+++... |.+|.++..++..+.+.|+.++|.+.
T Consensus 27 ~~~~Ll~q~~~~~~~~~~d~a~~~l~kl~~~~----------------------p~~p~~~~~~~~~~l~~g~~~~A~~~ 84 (1157)
T PRK11447 27 AQQQLLEQVRLGEATHREDLVRQSLYRLELID----------------------PNNPDVIAARFRLLLRQGDSDGAQKL 84 (1157)
T ss_pred HHHHHHHHHHHHHhhCChHHHHHHHHHHHccC----------------------CCCHHHHHHHHHHHHhCCCHHHHHHH
Confidence 34456677888889999999999999998876 78899999999999999999999999
Q ss_pred HHHHHhCCCccCHHhHH----------------HHHHHHHhCCCCHHHHHHHHHhchhcCCCcCHHHHHHHHHHHHhcCC
Q 004470 208 FEKLLNYGLVISVDSCN----------------LFLSRLSNTCDGLRMVVKSFTEFPELGICWNTASYNIMIHCLCRFGK 271 (751)
Q Consensus 208 ~~~~~~~g~~p~~~~~~----------------~ll~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 271 (751)
++++.+. .|+...+. ..++.+....|++++|.+.|+++.+.+++........+.......|+
T Consensus 85 l~~l~~~--~P~~~~~~~~~~~~~~~~~~~~~~l~~A~ll~~~g~~~eA~~~~~~~l~~~p~~~~la~~y~~~~~~~~g~ 162 (1157)
T PRK11447 85 LDRLSQL--APDSNAYRSSRTTMLLSTPEGRQALQQARLLATTGRTEEALASYDKLFNGAPPELDLAVEYWRLVAKLPAQ 162 (1157)
T ss_pred HHHHHhh--CCCChHHHHHHHHHHhcCCchhhHHHHHHHHHhCCCHHHHHHHHHHHccCCCCChHHHHHHHHHHhhCCcc
Confidence 9999987 46554432 22233445789999999999999987554322222112222234699
Q ss_pred HHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC------------------C----------
Q 004470 272 IKEAHLLLLQMELRGCSPDVVSFSTIINGYCYLGELQRVLKLIEEMQIKGL------------------K---------- 323 (751)
Q Consensus 272 ~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~------------------~---------- 323 (751)
.++|++.|+++.+... -+...+..+...+...|++++|++.++++..... .
T Consensus 163 ~~~A~~~L~~ll~~~P-~~~~~~~~LA~ll~~~g~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~ 241 (1157)
T PRK11447 163 RPEAINQLQRLNADYP-GNTGLRNTLALLLFSSGRRDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKY 241 (1157)
T ss_pred HHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHH
Confidence 9999999999988643 4677788899999999999999999999865321 0
Q ss_pred ----CCcccH---------------------HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHH
Q 004470 324 ----PNPYTY---------------------NSVVRLLCKTSKVVEAETILREMMNQGIVPDNVIYTTLIDGFCKMGNVA 378 (751)
Q Consensus 324 ----p~~~~~---------------------~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~ 378 (751)
|+.... ......+...|++++|+..|++.++.. +.+..++..|...|.+.|+++
T Consensus 242 l~~~p~~~~~~~A~~~L~~~~~~~~dp~~~~~~~G~~~~~~g~~~~A~~~l~~aL~~~-P~~~~a~~~Lg~~~~~~g~~~ 320 (1157)
T PRK11447 242 LQVFSDGDSVAAARSQLAEQQKQLADPAFRARAQGLAAVDSGQGGKAIPELQQAVRAN-PKDSEALGALGQAYSQQGDRA 320 (1157)
T ss_pred HHHCCCchHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHH
Confidence 010000 011334556778888888888777753 336677777777888888888
Q ss_pred HHHHHHHHHHhCCCCCC-HHHHH------------HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC
Q 004470 379 AAYRLFDEMRGLNIIPD-LLTYT------------AIICGFCLTGKMVEAEKLFHEMLGRGLEPDEIVYTALIDGYCKAG 445 (751)
Q Consensus 379 ~A~~~~~~m~~~~~~p~-~~~~~------------~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g 445 (751)
+|...|++..+...... ...|. .....+.+.|++++|+..|++++... +.+...+..+...+...|
T Consensus 321 eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~-P~~~~a~~~Lg~~~~~~g 399 (1157)
T PRK11447 321 RAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQVD-NTDSYAVLGLGDVAMARK 399 (1157)
T ss_pred HHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCC
Confidence 88888887776543221 11111 12345567788888888888877762 335566667777788888
Q ss_pred ChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC--------CCHHHHHHHHHHHHHcCCH
Q 004470 446 GMKKAFSLHNNMVHMRLTPNVVTYTALADGLCKSGELETANELLHEMCRKGLQ--------LNIYTYNSIVNGLCKAGNI 517 (751)
Q Consensus 446 ~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~--------~~~~~~~~li~~~~~~g~~ 517 (751)
++++|.+.|+++.+..+. +...+..+...+. .++.++|..+++.+...... .....+..+...+...|++
T Consensus 400 ~~~eA~~~y~~aL~~~p~-~~~a~~~L~~l~~-~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~ 477 (1157)
T PRK11447 400 DYAAAERYYQQALRMDPG-NTNAVRGLANLYR-QQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKW 477 (1157)
T ss_pred CHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHH-hcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCH
Confidence 888888888887765432 4555666666654 45677777777654332100 0122344566677788999
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 004470 518 LQAVKLMEDMEVAGFHPDTFTYTTIMDAYCKSGEMVKAHELLRDMLDKGLQPSVVTFNVLMNGFCMSGMIEDGEKLLKWM 597 (751)
Q Consensus 518 ~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~~ 597 (751)
++|++.+++..+.. +.+...+..+...|.+.|++++|...++++.+.. +.+...+..+...+...++.++|...++.+
T Consensus 478 ~eA~~~~~~Al~~~-P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~-P~~~~~~~a~al~l~~~~~~~~Al~~l~~l 555 (1157)
T PRK11447 478 AQAAELQRQRLALD-PGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQK-PNDPEQVYAYGLYLSGSDRDRAALAHLNTL 555 (1157)
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHhC
Confidence 99999999888765 4567777888888899999999999999888653 335555555555667788889998888776
Q ss_pred HHcCCCCCH---------hhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 004470 598 LEKGLKPNA---------ATYNPLIKQHCLRNDMRTTAKIYKGMCAQGITPDGNTYNILLQGHCKARNMKEAWFLHKEMV 668 (751)
Q Consensus 598 ~~~g~~p~~---------~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 668 (751)
......++. ..+..+...+...|+.++|.++++. .+++...+..+...+.+.|++++|+..|++++
T Consensus 556 ~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~-----~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al 630 (1157)
T PRK11447 556 PRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQ-----QPPSTRIDLTLADWAQQRGDYAAARAAYQRVL 630 (1157)
T ss_pred CchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHh-----CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 433222221 1123455678889999999998872 24566777889999999999999999999999
Q ss_pred HCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCC
Q 004470 669 QKGFNLTTSSYNALIKGFLKRKKYLEARELFEEMRRGGLVADREIYYFFVDINFEEGNTEITLELCDAAIECYL 742 (751)
Q Consensus 669 ~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 742 (751)
+..+. +...+..++..|...|++++|++.++.+.+.. +.+...+..++.++.+.|++++|.++++++++...
T Consensus 631 ~~~P~-~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~-p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~ 702 (1157)
T PRK11447 631 TREPG-NADARLGLIEVDIAQGDLAAARAQLAKLPATA-NDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAK 702 (1157)
T ss_pred HhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHhccC-CCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCc
Confidence 98655 78899999999999999999999999988753 45667778889999999999999999999998653
No 11
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.98 E-value=3.1e-25 Score=252.53 Aligned_cols=592 Identities=13% Similarity=0.032 Sum_probs=420.8
Q ss_pred hHHHHHHHhhcCChHHHHHHHHhhhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHcCCCCCchhhhHHHHHHHHHh
Q 004470 98 DHLIWVLMDIRSDYRLVLDFFDWACLRREPILEARCIVVQISVAAKDLKTAHGLIHDFWAKPNLDASIAFTHFVERLIYT 177 (751)
Q Consensus 98 ~~~~~~l~~~~~~~~~al~~f~~~~~~~~~~~~~~~~~~~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~l~~~ 177 (751)
......+...++|++.|+..|+.+....|.+..++..++.++...|++++|+..++++++.+
T Consensus 47 ~f~~a~~~~~~Gd~~~A~~~l~~Al~~dP~n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~ld------------------ 108 (987)
T PRK09782 47 RLDKALKAQKNNDEATAIREFEYIHQQVPDNIPLTLYLAEAYRHFGHDDRARLLLEDQLKRH------------------ 108 (987)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC------------------
Confidence 34445566667999999999999999999999999999999999999999999999999876
Q ss_pred hhcCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCccCHHhHHHHHHHHH-----hCCCCHHHHHHHHHhchhcCC
Q 004470 178 YKDWGSDPHVFDIFFQVLVEARKLNEARKLFEKLLNYGLVISVDSCNLFLSRLS-----NTCDGLRMVVKSFTEFPELGI 252 (751)
Q Consensus 178 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~l~-----~~~~~~~~a~~~~~~~~~~~~ 252 (751)
|.+...+..|+.. +++++|..+|+++.+. .|+.......+..+. ....+.++|.+..+ .....+
T Consensus 109 ----P~n~~~~~~La~i----~~~~kA~~~ye~l~~~--~P~n~~~~~~la~~~~~~~~l~y~q~eqAl~AL~-lr~~~~ 177 (987)
T PRK09782 109 ----PGDARLERSLAAI----PVEVKSVTTVEELLAQ--QKACDAVPTLRCRSEVGQNALRLAQLPVARAQLN-DATFAA 177 (987)
T ss_pred ----cccHHHHHHHHHh----ccChhHHHHHHHHHHh--CCCChhHHHHHHHHhhccchhhhhhHHHHHHHHH-HhhhCC
Confidence 5555555555443 9999999999999988 677776666666650 01244566777776 444444
Q ss_pred CcCHHHHHHH-HHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHCCCCCCcccHH
Q 004470 253 CWNTASYNIM-IHCLCRFGKIKEAHLLLLQMELRGCSPDVVSFSTIINGYCY-LGELQRVLKLIEEMQIKGLKPNPYTYN 330 (751)
Q Consensus 253 ~~~~~~~~~l-i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~-~g~~~~A~~~~~~m~~~g~~p~~~~~~ 330 (751)
.|+..+.... ...|.+.|++++|++++.++.+.+. .+......|...|.. .++ +++..++.. .++-+.....
T Consensus 178 ~~~~~vL~L~~~rlY~~l~dw~~Ai~lL~~L~k~~p-l~~~~~~~L~~ay~q~l~~-~~a~al~~~----~lk~d~~l~~ 251 (987)
T PRK09782 178 SPEGKTLRTDLLQRAIYLKQWSQADTLYNEARQQNT-LSAAERRQWFDVLLAGQLD-DRLLALQSQ----GIFTDPQSRI 251 (987)
T ss_pred CCCcHHHHHHHHHHHHHHhCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHhhCH-HHHHHHhch----hcccCHHHHH
Confidence 5455555544 8999999999999999999998865 455557777778887 477 777777553 2335788888
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCC-CCHHHHH------------------------------HHHHHHHHcCCHHH
Q 004470 331 SVVRLLCKTSKVVEAETILREMMNQGIV-PDNVIYT------------------------------TLIDGFCKMGNVAA 379 (751)
Q Consensus 331 ~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~~~~~~------------------------------~li~~~~~~g~~~~ 379 (751)
.++..|.+.|+.++|.++++++...-.. |...++. .++..+.+.++++.
T Consensus 252 ala~~yi~~G~~~~A~~~L~~~~~~~~~~~~~~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 331 (987)
T PRK09782 252 TYATALAYRGEKARLQHYLIENKPLFTTDAQEKSWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDA 331 (987)
T ss_pred HHHHHHHHCCCHHHHHHHHHhCcccccCCCccHHHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHH
Confidence 9999999999999999999987654211 2222221 22555666666665
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHH--HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHH
Q 004470 380 AYRLFDEMRGLNIIPDLLTYTAIICG--FCLTGKMVEAEKLFHEMLGRGLEPDEIVYTALIDGYCKAGGMKKAFSLHNNM 457 (751)
Q Consensus 380 A~~~~~~m~~~~~~p~~~~~~~li~~--~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~ 457 (751)
+.++.. +.|.... ..+.. ....+...++...+..|.... +-+.....-+.-...+.|+.++|.++++..
T Consensus 332 ~~~~~~------~~~~~~~--~~~r~~~~~~~~~~~~~~~~~~~~y~~~-~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~ 402 (987)
T PRK09782 332 AQKLLA------TLPANEM--LEERYAVSVATRNKAEALRLARLLYQQE-PANLTRLDQLTWQLMQNGQSREAADLLLQR 402 (987)
T ss_pred HHHHhc------CCCcchH--HHHHHhhccccCchhHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHh
Confidence 554421 2232222 12222 223356666666666666651 224455545555567788888888888887
Q ss_pred HhC-C-CCCCHHHHHHHHHHHHhcCC---HHHHHHH----------------------HHHHHHc-C-CCC--CHHHHHH
Q 004470 458 VHM-R-LTPNVVTYTALADGLCKSGE---LETANEL----------------------LHEMCRK-G-LQL--NIYTYNS 506 (751)
Q Consensus 458 ~~~-~-~~~~~~~~~~li~~~~~~g~---~~~A~~l----------------------~~~m~~~-g-~~~--~~~~~~~ 506 (751)
... + -.++......++..|.+.+. ..++..+ ++..... + .++ +...|..
T Consensus 403 ~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~ 482 (987)
T PRK09782 403 YPFQGDARLSQTLMARLASLLESHPYLATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNR 482 (987)
T ss_pred cCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHH
Confidence 762 1 12244455567777777655 2333222 1111111 1 133 5667777
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 004470 507 IVNGLCKAGNILQAVKLMEDMEVAGFHPDTFTYTTIMDAYCKSGEMVKAHELLRDMLDKGLQPSVVTFNVLMNGFCMSGM 586 (751)
Q Consensus 507 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~ 586 (751)
+..++.. ++.++|+..+.+.... .|+......+...+...|++++|...++++... +|+...+..+...+.+.|+
T Consensus 483 LG~~l~~-~~~~eAi~a~~~Al~~--~Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~all~~Gd 557 (987)
T PRK09782 483 LAKCYRD-TLPGVALYAWLQAEQR--QPDAWQHRAVAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAANTAQAAGN 557 (987)
T ss_pred HHHHHHh-CCcHHHHHHHHHHHHh--CCchHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHHCCC
Confidence 7777766 7888899988877765 466555444555556889999999999987654 4555556677778888999
Q ss_pred hhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 004470 587 IEDGEKLLKWMLEKGLKPNAATYNPLIKQHCLRNDMRTTAKIYKGMCAQGITPDGNTYNILLQGHCKARNMKEAWFLHKE 666 (751)
Q Consensus 587 ~~~A~~l~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 666 (751)
.++|...+++.++... ++...+..+.......|++++|...+++.++. .|+...+..+...+.+.|++++|+..+++
T Consensus 558 ~~eA~~~l~qAL~l~P-~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l--~P~~~a~~~LA~~l~~lG~~deA~~~l~~ 634 (987)
T PRK09782 558 GAARDRWLQQAEQRGL-GDNALYWWLHAQRYIPGQPELALNDLTRSLNI--APSANAYVARATIYRQRHNVPAAVSDLRA 634 (987)
T ss_pred HHHHHHHHHHHHhcCC-ccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh--CCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 9999999998887642 22333333334444569999999999999874 56778888888999999999999999999
Q ss_pred HHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCC
Q 004470 667 MVQKGFNLTTSSYNALIKGFLKRKKYLEARELFEEMRRGGLVADREIYYFFVDINFEEGNTEITLELCDAAIECYLV 743 (751)
Q Consensus 667 ~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 743 (751)
+++..+. +...+..+...+...|++++|+..++++++.. |.+...+..++.++...|++++|+..++++++....
T Consensus 635 AL~l~Pd-~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~-P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P~ 709 (987)
T PRK09782 635 ALELEPN-NSNYQAALGYALWDSGDIAQSREMLERAHKGL-PDDPALIRQLAYVNQRLDDMAATQHYARLVIDDIDN 709 (987)
T ss_pred HHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC
Confidence 9988655 77888889999999999999999999998864 567788889999999999999999999999887654
No 12
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.96 E-value=1.1e-22 Score=231.87 Aligned_cols=556 Identities=12% Similarity=0.007 Sum_probs=408.3
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHcCCCCCchhhhHHHHHHHHHhhhcCCCChhhHHHHHHHHHhcCChhHHHHHHH
Q 004470 130 EARCIVVQISVAAKDLKTAHGLIHDFWAKPNLDASIAFTHFVERLIYTYKDWGSDPHVFDIFFQVLVEARKLNEARKLFE 209 (751)
Q Consensus 130 ~~~~~~~~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 209 (751)
..++..+..+...|++++|...++++++.+ |.++.++..|++.|...|++++|+..++
T Consensus 45 ~~~f~~a~~~~~~Gd~~~A~~~l~~Al~~d----------------------P~n~~~~~~LA~~yl~~g~~~~A~~~~~ 102 (987)
T PRK09782 45 YPRLDKALKAQKNNDEATAIREFEYIHQQV----------------------PDNIPLTLYLAEAYRHFGHDDRARLLLE 102 (987)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHhC----------------------CCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 345555666677799999999999999876 7788899999999999999999999999
Q ss_pred HHHhCCCccCHHhHHHHHHHHHhCCCCHHHHHHHHHhchhcCCCcCHHHHHHHHHH--------HHhcCCHHHHHHHHHH
Q 004470 210 KLLNYGLVISVDSCNLFLSRLSNTCDGLRMVVKSFTEFPELGICWNTASYNIMIHC--------LCRFGKIKEAHLLLLQ 281 (751)
Q Consensus 210 ~~~~~g~~p~~~~~~~ll~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~--------~~~~g~~~~A~~~~~~ 281 (751)
++++. .|+...+...+..+ +++++|..+|+++.+..+. +..++..+... |.+.++..++++
T Consensus 103 kAv~l--dP~n~~~~~~La~i----~~~~kA~~~ye~l~~~~P~-n~~~~~~la~~~~~~~~l~y~q~eqAl~AL~---- 171 (987)
T PRK09782 103 DQLKR--HPGDARLERSLAAI----PVEVKSVTTVEELLAQQKA-CDAVPTLRCRSEVGQNALRLAQLPVARAQLN---- 171 (987)
T ss_pred HHHhc--CcccHHHHHHHHHh----ccChhHHHHHHHHHHhCCC-ChhHHHHHHHHhhccchhhhhhHHHHHHHHH----
Confidence 99998 78888777777655 7889999999999999776 66677776666 666655555554
Q ss_pred HHhcCCCCCHHHHHHH-HHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHh-cCCHHHHHHHHHHHHHCCCCC
Q 004470 282 MELRGCSPDVVSFSTI-INGYCYLGELQRVLKLIEEMQIKGLKPNPYTYNSVVRLLCK-TSKVVEAETILREMMNQGIVP 359 (751)
Q Consensus 282 m~~~g~~p~~~~~~~l-i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~-~g~~~~A~~~~~~m~~~g~~p 359 (751)
.......|+..+.... ...|.+.|++++|++++.++.+.+.. +......|...|.. .++ +++..+++.. +..
T Consensus 172 lr~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai~lL~~L~k~~pl-~~~~~~~L~~ay~q~l~~-~~a~al~~~~----lk~ 245 (987)
T PRK09782 172 DATFAASPEGKTLRTDLLQRAIYLKQWSQADTLYNEARQQNTL-SAAERRQWFDVLLAGQLD-DRLLALQSQG----IFT 245 (987)
T ss_pred HhhhCCCCCcHHHHHHHHHHHHHHhCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHhhCH-HHHHHHhchh----ccc
Confidence 3332233445444444 89999999999999999999998633 45557777778887 477 8888875542 235
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCC-CCHHHHHHH------------------------------HHHHHh
Q 004470 360 DNVIYTTLIDGFCKMGNVAAAYRLFDEMRGLNII-PDLLTYTAI------------------------------ICGFCL 408 (751)
Q Consensus 360 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~-p~~~~~~~l------------------------------i~~~~~ 408 (751)
+......+++.|.+.|+.++|.++++++...... |...+|.-+ +..+.+
T Consensus 246 d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~~~~~~~~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (987)
T PRK09782 246 DPQSRITYATALAYRGEKARLQHYLIENKPLFTTDAQEKSWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLK 325 (987)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHhCcccccCCCccHHHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHh
Confidence 8889999999999999999999999987654322 333332221 344445
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH--HHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 004470 409 TGKMVEAEKLFHEMLGRGLEPDEIVYTALIDGY--CKAGGMKKAFSLHNNMVHMRLTPNVVTYTALADGLCKSGELETAN 486 (751)
Q Consensus 409 ~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~--~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 486 (751)
.++++.++++. .+.|.... ..++.. ...+...++...+..|.+... -+......+.-...+.|+.++|.
T Consensus 326 ~~~~~~~~~~~------~~~~~~~~--~~~r~~~~~~~~~~~~~~~~~~~~y~~~~-~~~~~l~q~~~~~~~~~~~~~a~ 396 (987)
T PRK09782 326 EGQYDAAQKLL------ATLPANEM--LEERYAVSVATRNKAEALRLARLLYQQEP-ANLTRLDQLTWQLMQNGQSREAA 396 (987)
T ss_pred ccHHHHHHHHh------cCCCcchH--HHHHHhhccccCchhHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHcccHHHHH
Confidence 55555444331 13333332 222222 234666777777777766532 25666666666678899999999
Q ss_pred HHHHHHHHc-C-CCCCHHHHHHHHHHHHHcCC---HHHHHHH----------------------H---HHHHHCCCCC--
Q 004470 487 ELLHEMCRK-G-LQLNIYTYNSIVNGLCKAGN---ILQAVKL----------------------M---EDMEVAGFHP-- 534 (751)
Q Consensus 487 ~l~~~m~~~-g-~~~~~~~~~~li~~~~~~g~---~~~A~~~----------------------~---~~~~~~~~~~-- 534 (751)
++++..... + ..++.....-++..|.+.+. ..++..+ + ...... .++
T Consensus 397 ~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~-~p~~~ 475 (987)
T PRK09782 397 DLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGD-MSPSY 475 (987)
T ss_pred HHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhccccccchhHHHHhhhhhhhhhHHHHHHhccc-CCCCC
Confidence 999998763 1 22344455577777777665 3333322 1 112211 134
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhhHHHHHH
Q 004470 535 DTFTYTTIMDAYCKSGEMVKAHELLRDMLDKGLQPSVVTFNVLMNGFCMSGMIEDGEKLLKWMLEKGLKPNAATYNPLIK 614 (751)
Q Consensus 535 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~g~~p~~~~~~~l~~ 614 (751)
+...|..+..++.. ++.++|...+.+.... .|+......+...+...|++++|...++++... .|+...+..+..
T Consensus 476 ~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~--~Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~ 550 (987)
T PRK09782 476 DAAAWNRLAKCYRD-TLPGVALYAWLQAEQR--QPDAWQHRAVAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAAN 550 (987)
T ss_pred CHHHHHHHHHHHHh-CCcHHHHHHHHHHHHh--CCchHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHH
Confidence 67788888888776 8999999988888765 456554444555567899999999999998664 445555667778
Q ss_pred HHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 004470 615 QHCLRNDMRTTAKIYKGMCAQGITPDGNTYNILLQGHCKARNMKEAWFLHKEMVQKGFNLTTSSYNALIKGFLKRKKYLE 694 (751)
Q Consensus 615 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 694 (751)
.+...|+.++|.+.+++.++.+ +++...+..+...+.+.|++++|...++++++.. |+...+..++.++.+.|++++
T Consensus 551 all~~Gd~~eA~~~l~qAL~l~-P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l~--P~~~a~~~LA~~l~~lG~~de 627 (987)
T PRK09782 551 TAQAAGNGAARDRWLQQAEQRG-LGDNALYWWLHAQRYIPGQPELALNDLTRSLNIA--PSANAYVARATIYRQRHNVPA 627 (987)
T ss_pred HHHHCCCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhC--CCHHHHHHHHHHHHHCCCHHH
Confidence 8899999999999999999864 2233344444445556799999999999999875 468899999999999999999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCC
Q 004470 695 ARELFEEMRRGGLVADREIYYFFVDINFEEGNTEITLELCDAAIECYLV 743 (751)
Q Consensus 695 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 743 (751)
|+..++++++.. |.+...+..++..+...|+.++|++.++++++..+.
T Consensus 628 A~~~l~~AL~l~-Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~ 675 (987)
T PRK09782 628 AVSDLRAALELE-PNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPD 675 (987)
T ss_pred HHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC
Confidence 999999999975 667888999999999999999999999999987653
No 13
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.95 E-value=3.4e-22 Score=212.17 Aligned_cols=598 Identities=12% Similarity=0.038 Sum_probs=449.5
Q ss_pred hHHHHHHHHhhhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHcCCCCCchhhhHHHHHHHHHhhhcCCCChhhHHH
Q 004470 111 YRLVLDFFDWACLRREPILEARCIVVQISVAAKDLKTAHGLIHDFWAKPNLDASIAFTHFVERLIYTYKDWGSDPHVFDI 190 (751)
Q Consensus 111 ~~~al~~f~~~~~~~~~~~~~~~~~~~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 190 (751)
.+.|..-|.++.++.|++..++.--+.++...++|..|..++..++..+ +.|++++ ...
T Consensus 146 ~~~A~a~F~~Vl~~sp~Nil~LlGkA~i~ynkkdY~~al~yyk~al~in-------------------p~~~aD~--rIg 204 (1018)
T KOG2002|consen 146 MDDADAQFHFVLKQSPDNILALLGKARIAYNKKDYRGALKYYKKALRIN-------------------PACKADV--RIG 204 (1018)
T ss_pred HHHHHHHHHHHHhhCCcchHHHHHHHHHHhccccHHHHHHHHHHHHhcC-------------------cccCCCc--cch
Confidence 4789999999999999999999999999999999999999999987654 2234444 344
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCCCccCHHhHHHHHHHHHhC---CCCHHHHHHHHHhchhcCCCcCHHHHHHHHHHHH
Q 004470 191 FFQVLVEARKLNEARKLFEKLLNYGLVISVDSCNLFLSRLSNT---CDGLRMVVKSFTEFPELGICWNTASYNIMIHCLC 267 (751)
Q Consensus 191 l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~l~~~---~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 267 (751)
.+.++.+.|+.+.|+..|.++++. .|+.+.....|+.+-.. ...+..+...+..+-..... |+.+.+.|.+.|.
T Consensus 205 ig~Cf~kl~~~~~a~~a~~ralqL--dp~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n~~-nP~~l~~LAn~fy 281 (1018)
T KOG2002|consen 205 IGHCFWKLGMSEKALLAFERALQL--DPTCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKENNE-NPVALNHLANHFY 281 (1018)
T ss_pred hhhHHHhccchhhHHHHHHHHHhc--ChhhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhcCC-CcHHHHHHHHHHh
Confidence 567788999999999999999987 67666666666555433 24566788888877766554 8899999999999
Q ss_pred hcCCHHHHHHHHHHHHhcCCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCHHHH
Q 004470 268 RFGKIKEAHLLLLQMELRGCS--PDVVSFSTIINGYCYLGELQRVLKLIEEMQIKGLKPNPYTYNSVVRLLCKTSKVVEA 345 (751)
Q Consensus 268 ~~g~~~~A~~~~~~m~~~g~~--p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A 345 (751)
-.|+++.++.+...+...... .-..+|-.+..+|-..|++++|...|-+..+....--+..+.-|...+.+.|+++.+
T Consensus 282 fK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s 361 (1018)
T KOG2002|consen 282 FKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEES 361 (1018)
T ss_pred hcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHH
Confidence 999999999999998765321 123457788999999999999999999887763221244566788999999999999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHHcC----CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 004470 346 ETILREMMNQGIVPDNVIYTTLIDGFCKMG----NVAAAYRLFDEMRGLNIIPDLLTYTAIICGFCLTGKMVEAEKLFHE 421 (751)
Q Consensus 346 ~~~~~~m~~~g~~p~~~~~~~li~~~~~~g----~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 421 (751)
...|+.+.+.. +.+..+...|...|...+ ..+.|..++.+..+.-+. |...|-.+...+-.. +...++..|..
T Consensus 362 ~~~fEkv~k~~-p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~~~-d~~a~l~laql~e~~-d~~~sL~~~~~ 438 (1018)
T KOG2002|consen 362 KFCFEKVLKQL-PNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQTPV-DSEAWLELAQLLEQT-DPWASLDAYGN 438 (1018)
T ss_pred HHHHHHHHHhC-cchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcccc-cHHHHHHHHHHHHhc-ChHHHHHHHHH
Confidence 99999999873 445677788888888775 567788888887776533 777787777666554 44444776655
Q ss_pred HH----HCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhC---CCC------CCHHHHHHHHHHHHhcCCHHHHHHH
Q 004470 422 ML----GRGLEPDEIVYTALIDGYCKAGGMKKAFSLHNNMVHM---RLT------PNVVTYTALADGLCKSGELETANEL 488 (751)
Q Consensus 422 m~----~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~------~~~~~~~~li~~~~~~g~~~~A~~l 488 (751)
.. ..+-.+.....|.+...+...|.+++|...|...... ... +++.+-..+...+-..++.+.|.+.
T Consensus 439 A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~ 518 (1018)
T KOG2002|consen 439 ALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEM 518 (1018)
T ss_pred HHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHH
Confidence 43 4556678899999999999999999999999988765 112 2333344566667778899999999
Q ss_pred HHHHHHcCCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC-
Q 004470 489 LHEMCRKGLQLNI-YTYNSIVNGLCKAGNILQAVKLMEDMEVAGFHPDTFTYTTIMDAYCKSGEMVKAHELLRDMLDKG- 566 (751)
Q Consensus 489 ~~~m~~~g~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~- 566 (751)
|..+.+.. |.- ..|-.++-.....++..+|...+++....+ ..++..++.+...+.+..++..|.+-|+...+.-
T Consensus 519 Yk~Ilkeh--p~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d-~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~ 595 (1018)
T KOG2002|consen 519 YKSILKEH--PGYIDAYLRLGCMARDKNNLYEASLLLKDALNID-SSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTS 595 (1018)
T ss_pred HHHHHHHC--chhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcc-cCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhc
Confidence 99998873 333 344444433334578889999999988765 5677777778888899999999988777766431
Q ss_pred CCCCHHHHHHHHHHHHh------------cCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 004470 567 LQPSVVTFNVLMNGFCM------------SGMIEDGEKLLKWMLEKGLKPNAATYNPLIKQHCLRNDMRTTAKIYKGMCA 634 (751)
Q Consensus 567 ~~p~~~~~~~li~~~~~------------~g~~~~A~~l~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 634 (751)
..+|..+.-.|.+.|.. .+..++|+++|.+.+.... -|...-|.+.-.++..|++.+|..+|.+..+
T Consensus 596 ~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~dp-kN~yAANGIgiVLA~kg~~~~A~dIFsqVrE 674 (1018)
T KOG2002|consen 596 TKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRNDP-KNMYAANGIGIVLAEKGRFSEARDIFSQVRE 674 (1018)
T ss_pred cCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcCc-chhhhccchhhhhhhccCchHHHHHHHHHHH
Confidence 23577777777775542 2456788888888887643 3667777888888999999999999999988
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH
Q 004470 635 QGITPDGNTYNILLQGHCKARNMKEAWFLHKEMVQK-GFNLTTSSYNALIKGFLKRKKYLEARELFEEMRRGGLVADREI 713 (751)
Q Consensus 635 ~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 713 (751)
... .+..+|-.+.++|...|++..|++.|+...++ +..-+..+...|..++.+.|++.+|.+.+..++... +-|+..
T Consensus 675 a~~-~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~~-p~~~~v 752 (1018)
T KOG2002|consen 675 ATS-DFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHLA-PSNTSV 752 (1018)
T ss_pred HHh-hCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhC-CccchH
Confidence 642 34566778899999999999999999988775 444567888899999999999999999999888754 334433
Q ss_pred HHHHHHH-------------------HHhcCChhHHHHHHHHHHHcC
Q 004470 714 YYFFVDI-------------------NFEEGNTEITLELCDAAIECY 741 (751)
Q Consensus 714 ~~~l~~~-------------------~~~~g~~~~A~~~~~~~~~~~ 741 (751)
...++-. ....+..++|.++|.++...+
T Consensus 753 ~FN~a~v~kkla~s~lr~~k~t~eev~~a~~~le~a~r~F~~ls~~~ 799 (1018)
T KOG2002|consen 753 KFNLALVLKKLAESILRLEKRTLEEVLEAVKELEEARRLFTELSKNG 799 (1018)
T ss_pred HhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 3322222 222345666777777766554
No 14
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.94 E-value=5.4e-21 Score=203.17 Aligned_cols=550 Identities=13% Similarity=0.061 Sum_probs=413.9
Q ss_pred CCChhhHHHHHHHHHhcCChhHHHHHHHHHHhC--CCccCHHhHHHHHHHHHhCCCCHHHHHHHHHhchhcCCCcCHHHH
Q 004470 182 GSDPHVFDIFFQVLVEARKLNEARKLFEKLLNY--GLVISVDSCNLFLSRLSNTCDGLRMVVKSFTEFPELGICWNTASY 259 (751)
Q Consensus 182 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--g~~p~~~~~~~ll~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 259 (751)
|.+.-.+..=+......|++..|+.+|..++.. .+.||+. ..++-+.-+.|+.+.|+..|.++.+.+|. ++.++
T Consensus 161 p~Nil~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~aD~r---Igig~Cf~kl~~~~~a~~a~~ralqLdp~-~v~al 236 (1018)
T KOG2002|consen 161 PDNILALLGKARIAYNKKDYRGALKYYKKALRINPACKADVR---IGIGHCFWKLGMSEKALLAFERALQLDPT-CVSAL 236 (1018)
T ss_pred CcchHHHHHHHHHHhccccHHHHHHHHHHHHhcCcccCCCcc---chhhhHHHhccchhhHHHHHHHHHhcChh-hHHHH
Confidence 555444444444455678999999999997654 3456653 23344444789999999999999999763 55555
Q ss_pred HHHHHHHHhcC---CHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC--CCcccHHHHHH
Q 004470 260 NIMIHCLCRFG---KIKEAHLLLLQMELRGCSPDVVSFSTIINGYCYLGELQRVLKLIEEMQIKGLK--PNPYTYNSVVR 334 (751)
Q Consensus 260 ~~li~~~~~~g---~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~--p~~~~~~~li~ 334 (751)
-.|...-.... .+..+..++...-.... -|++..+.|.+.|.-.|++..++.+.+.+...... .-...|-.+.+
T Consensus 237 v~L~~~~l~~~d~~s~~~~~~ll~~ay~~n~-~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gR 315 (1018)
T KOG2002|consen 237 VALGEVDLNFNDSDSYKKGVQLLQRAYKENN-ENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGR 315 (1018)
T ss_pred HHHHHHHHHccchHHHHHHHHHHHHHHhhcC-CCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHH
Confidence 55544333333 45566777766544322 47778899999999999999999999999876311 12345888999
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC--
Q 004470 335 LLCKTSKVVEAETILREMMNQGIVPDN--VIYTTLIDGFCKMGNVAAAYRLFDEMRGLNIIPDLLTYTAIICGFCLTG-- 410 (751)
Q Consensus 335 ~~~~~g~~~~A~~~~~~m~~~g~~p~~--~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g-- 410 (751)
+|...|++++|...|.+..+. .+|. ..+--|...|.+.|+++.+...|+.+....+. +..+...+...|...+
T Consensus 316 s~Ha~Gd~ekA~~yY~~s~k~--~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~-~~etm~iLG~Lya~~~~~ 392 (1018)
T KOG2002|consen 316 SYHAQGDFEKAFKYYMESLKA--DNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPN-NYETMKILGCLYAHSAKK 392 (1018)
T ss_pred HHHhhccHHHHHHHHHHHHcc--CCCCccccccchhHHHHHhchHHHHHHHHHHHHHhCcc-hHHHHHHHHhHHHhhhhh
Confidence 999999999999999988876 3444 34456788999999999999999999887543 6777777777777765
Q ss_pred --CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHH----hCCCCCCHHHHHHHHHHHHhcCCHHH
Q 004470 411 --KMVEAEKLFHEMLGRGLEPDEIVYTALIDGYCKAGGMKKAFSLHNNMV----HMRLTPNVVTYTALADGLCKSGELET 484 (751)
Q Consensus 411 --~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~~~~~li~~~~~~g~~~~ 484 (751)
..+.|..++.+..+. .+.|...|-.+...+... +...++..+..+. ..+-.+.+...|.+.......|++++
T Consensus 393 ~~~~d~a~~~l~K~~~~-~~~d~~a~l~laql~e~~-d~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~ 470 (1018)
T KOG2002|consen 393 QEKRDKASNVLGKVLEQ-TPVDSEAWLELAQLLEQT-DPWASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEK 470 (1018)
T ss_pred hHHHHHHHHHHHHHHhc-ccccHHHHHHHHHHHHhc-ChHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHH
Confidence 567777787777766 345777887777766554 4444476666554 44555788999999999999999999
Q ss_pred HHHHHHHHHHc---CCCCCH------HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHH
Q 004470 485 ANELLHEMCRK---GLQLNI------YTYNSIVNGLCKAGNILQAVKLMEDMEVAGFHPDTFTYTTIMDAYCKSGEMVKA 555 (751)
Q Consensus 485 A~~l~~~m~~~---g~~~~~------~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 555 (751)
|...|...... ...+|. .+-..+..++-..++.+.|.+.+..+.+.. +.-+..|-.++......+...+|
T Consensus 471 A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkeh-p~YId~ylRl~~ma~~k~~~~ea 549 (1018)
T KOG2002|consen 471 ALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEH-PGYIDAYLRLGCMARDKNNLYEA 549 (1018)
T ss_pred HHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHC-chhHHHHHHhhHHHHhccCcHHH
Confidence 99999988765 122222 233445666677889999999999998874 33345555555444455788999
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcC-CCCCHhhHHHHHHHHH------------HcCCH
Q 004470 556 HELLRDMLDKGLQPSVVTFNVLMNGFCMSGMIEDGEKLLKWMLEKG-LKPNAATYNPLIKQHC------------LRNDM 622 (751)
Q Consensus 556 ~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~g-~~p~~~~~~~l~~~~~------------~~g~~ 622 (751)
...++.....+ ..++..+..+...+.+...+..|.+-|......- ..+|......|...|. ..+..
T Consensus 550 ~~~lk~~l~~d-~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~ 628 (1018)
T KOG2002|consen 550 SLLLKDALNID-SSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQ 628 (1018)
T ss_pred HHHHHHHHhcc-cCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHH
Confidence 99999998754 5577778888888998889999988777776542 2357666666666543 23467
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 004470 623 RTTAKIYKGMCAQGITPDGNTYNILLQGHCKARNMKEAWFLHKEMVQKGFNLTTSSYNALIKGFLKRKKYLEARELFEEM 702 (751)
Q Consensus 623 ~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 702 (751)
++|+++|.+.++.. +-|...-|.+.-.++..|++.+|..+|.+..+.... ...+|..++.+|...|+|-.|+++|+..
T Consensus 629 ~KAlq~y~kvL~~d-pkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~~-~~dv~lNlah~~~e~~qy~~AIqmYe~~ 706 (1018)
T KOG2002|consen 629 EKALQLYGKVLRND-PKNMYAANGIGIVLAEKGRFSEARDIFSQVREATSD-FEDVWLNLAHCYVEQGQYRLAIQMYENC 706 (1018)
T ss_pred HHHHHHHHHHHhcC-cchhhhccchhhhhhhccCchHHHHHHHHHHHHHhh-CCceeeeHHHHHHHHHHHHHHHHHHHHH
Confidence 88999999999864 347888888999999999999999999999987542 6778999999999999999999999999
Q ss_pred HHC-CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC
Q 004470 703 RRG-GLVADREIYYFFVDINFEEGNTEITLELCDAAIECYLVGK 745 (751)
Q Consensus 703 ~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 745 (751)
.+. .-..+..+...|++++++.|.+.+|.+.+..++...+...
T Consensus 707 lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~~p~~~ 750 (1018)
T KOG2002|consen 707 LKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHLAPSNT 750 (1018)
T ss_pred HHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCccc
Confidence 874 3355788999999999999999999999999988766544
No 15
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.93 E-value=4.6e-22 Score=200.41 Aligned_cols=445 Identities=15% Similarity=0.102 Sum_probs=335.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHh
Q 004470 259 YNIMIHCLCRFGKIKEAHLLLLQMELRGCSPDVVSFSTIINGYCYLGELQRVLKLIEEMQIKGLKPNPYTYNSVVRLLCK 338 (751)
Q Consensus 259 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~ 338 (751)
...|..-..+.|++.+|++.-...-..+. .+....-.+-.++.+..+.+.....-....+.. +--..+|..+.+.+-.
T Consensus 51 ~l~lah~~yq~gd~~~a~~h~nmv~~~d~-t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~-~q~ae~ysn~aN~~ke 128 (966)
T KOG4626|consen 51 RLELAHRLYQGGDYKQAEKHCNMVGQEDP-TNTERLLLLSAIFFQGSRLDKSSAGSLLAIRKN-PQGAEAYSNLANILKE 128 (966)
T ss_pred HHHHHHHHHhccCHHHHHHHHhHhhccCC-Ccccceeeehhhhhcccchhhhhhhhhhhhhcc-chHHHHHHHHHHHHHH
Confidence 44566667788888888876655443322 233333344455666666766655544444442 3356788888888888
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHH-HHHHHHHHhcCCHHHHHH
Q 004470 339 TSKVVEAETILREMMNQGIVPDNVIYTTLIDGFCKMGNVAAAYRLFDEMRGLNIIPDLLTY-TAIICGFCLTGKMVEAEK 417 (751)
Q Consensus 339 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~-~~li~~~~~~g~~~~A~~ 417 (751)
.|++++|+..++.+++.. +-.+..|..+..++...|+.+.|.+.|.+..+.+ |+.... +.+...+-..|++++|..
T Consensus 129 rg~~~~al~~y~~aiel~-p~fida~inla~al~~~~~~~~a~~~~~~alqln--P~l~ca~s~lgnLlka~Grl~ea~~ 205 (966)
T KOG4626|consen 129 RGQLQDALALYRAAIELK-PKFIDAYINLAAALVTQGDLELAVQCFFEALQLN--PDLYCARSDLGNLLKAEGRLEEAKA 205 (966)
T ss_pred hchHHHHHHHHHHHHhcC-chhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcC--cchhhhhcchhHHHHhhcccchhHH
Confidence 888888888888888863 3356788888888888888888888888887754 554433 334445556788888888
Q ss_pred HHHHHHHCCCCCC-HHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 004470 418 LFHEMLGRGLEPD-EIVYTALIDGYCKAGGMKKAFSLHNNMVHMRLTPNVVTYTALADGLCKSGELETANELLHEMCRKG 496 (751)
Q Consensus 418 ~~~~m~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g 496 (751)
.|.+.++. .|. ...|+.|...+-.+|+...|+.-|++.++..+. -...|-.|.+.|...+.++.|...+.+.....
T Consensus 206 cYlkAi~~--qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~-f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lr 282 (966)
T KOG4626|consen 206 CYLKAIET--QPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPN-FLDAYINLGNVYKEARIFDRAVSCYLRALNLR 282 (966)
T ss_pred HHHHHHhh--CCceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCc-chHHHhhHHHHHHHHhcchHHHHHHHHHHhcC
Confidence 88888765 333 456788888888888888888888888876422 35678888888888888888888888877653
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHH
Q 004470 497 LQLNIYTYNSIVNGLCKAGNILQAVKLMEDMEVAGFHPDTFTYTTIMDAYCKSGEMVKAHELLRDMLDKGLQPSVVTFNV 576 (751)
Q Consensus 497 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ 576 (751)
. .....+..+.-.|..+|.++-|+..+++..+.. +.=...|+.|..++-..|++.+|.+.+++.+... +....+.+.
T Consensus 283 p-n~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~-P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~-p~hadam~N 359 (966)
T KOG4626|consen 283 P-NHAVAHGNLACIYYEQGLLDLAIDTYKRALELQ-PNFPDAYNNLANALKDKGSVTEAVDCYNKALRLC-PNHADAMNN 359 (966)
T ss_pred C-cchhhccceEEEEeccccHHHHHHHHHHHHhcC-CCchHHHhHHHHHHHhccchHHHHHHHHHHHHhC-CccHHHHHH
Confidence 2 245667777777888899999999999888764 3347788889999988899999999999888763 446677888
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHcCCCCC-HhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhc
Q 004470 577 LMNGFCMSGMIEDGEKLLKWMLEKGLKPN-AATYNPLIKQHCLRNDMRTTAKIYKGMCAQGITPD-GNTYNILLQGHCKA 654 (751)
Q Consensus 577 li~~~~~~g~~~~A~~l~~~~~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~li~~~~~~ 654 (751)
|...|...|.+++|..+|....+- .|. ...++.|...|-.+|++++|+..|++.++ +.|+ ...|+.+...|-..
T Consensus 360 Lgni~~E~~~~e~A~~ly~~al~v--~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykealr--I~P~fAda~~NmGnt~ke~ 435 (966)
T KOG4626|consen 360 LGNIYREQGKIEEATRLYLKALEV--FPEFAAAHNNLASIYKQQGNLDDAIMCYKEALR--IKPTFADALSNMGNTYKEM 435 (966)
T ss_pred HHHHHHHhccchHHHHHHHHHHhh--ChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHh--cCchHHHHHHhcchHHHHh
Confidence 899999999999999999888874 343 45678888889999999999999999887 6776 66788999999999
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHH
Q 004470 655 RNMKEAWFLHKEMVQKGFNLTTSSYNALIKGFLKRKKYLEARELFEEMRRGGLVAD-REIYYFFVDIN 721 (751)
Q Consensus 655 g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~ 721 (751)
|+.+.|+..+.+++..++. -...++.|+..|-..|+..+|+.-|+.+++. .|| +..|..++.++
T Consensus 436 g~v~~A~q~y~rAI~~nPt-~AeAhsNLasi~kDsGni~~AI~sY~~aLkl--kPDfpdA~cNllh~l 500 (966)
T KOG4626|consen 436 GDVSAAIQCYTRAIQINPT-FAEAHSNLASIYKDSGNIPEAIQSYRTALKL--KPDFPDAYCNLLHCL 500 (966)
T ss_pred hhHHHHHHHHHHHHhcCcH-HHHHHhhHHHHhhccCCcHHHHHHHHHHHcc--CCCCchhhhHHHHHH
Confidence 9999999999999887544 4568889999999999999999999999884 444 45555555544
No 16
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.93 E-value=1.5e-21 Score=196.74 Aligned_cols=446 Identities=13% Similarity=0.096 Sum_probs=322.9
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHcCCCCCchhhhHHHHHHHHHhhhcCCCChhhHHHHHHHHHhcCChhHHHHHHH
Q 004470 130 EARCIVVQISVAAKDLKTAHGLIHDFWAKPNLDASIAFTHFVERLIYTYKDWGSDPHVFDIFFQVLVEARKLNEARKLFE 209 (751)
Q Consensus 130 ~~~~~~~~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 209 (751)
.....++|.+...|++++|++.-..+...+ |.+.....++...+.+..+++.....-.
T Consensus 49 ~~~l~lah~~yq~gd~~~a~~h~nmv~~~d----------------------~t~~~~llll~ai~~q~~r~d~s~a~~~ 106 (966)
T KOG4626|consen 49 DDRLELAHRLYQGGDYKQAEKHCNMVGQED----------------------PTNTERLLLLSAIFFQGSRLDKSSAGSL 106 (966)
T ss_pred hhHHHHHHHHHhccCHHHHHHHHhHhhccC----------------------CCcccceeeehhhhhcccchhhhhhhhh
Confidence 446778899999999999988776665544 2233334445555666666666665555
Q ss_pred HHHhCCCccCHHhHHHHHHHHHhCCCCHHHHHHHHHhchhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 004470 210 KLLNYGLVISVDSCNLFLSRLSNTCDGLRMVVKSFTEFPELGICWNTASYNIMIHCLCRFGKIKEAHLLLLQMELRGCSP 289 (751)
Q Consensus 210 ~~~~~g~~p~~~~~~~ll~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 289 (751)
..++. .|--..+-.-++..++..|+++.|+..|+.+++..+. .+..|..+..++...|+.+.|.+.|.+..+.+ |
T Consensus 107 ~a~r~--~~q~ae~ysn~aN~~kerg~~~~al~~y~~aiel~p~-fida~inla~al~~~~~~~~a~~~~~~alqln--P 181 (966)
T KOG4626|consen 107 LAIRK--NPQGAEAYSNLANILKERGQLQDALALYRAAIELKPK-FIDAYINLAAALVTQGDLELAVQCFFEALQLN--P 181 (966)
T ss_pred hhhhc--cchHHHHHHHHHHHHHHhchHHHHHHHHHHHHhcCch-hhHHHhhHHHHHHhcCCCcccHHHHHHHHhcC--c
Confidence 55544 3433333333445556778888888888888887655 67788888888888888888888888777643 4
Q ss_pred CHHHH-HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHH
Q 004470 290 DVVSF-STIINGYCYLGELQRVLKLIEEMQIKGLKPNPYTYNSVVRLLCKTSKVVEAETILREMMNQGIVPD-NVIYTTL 367 (751)
Q Consensus 290 ~~~~~-~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~l 367 (751)
+.... +-+...+-..|+..+|...+.+..+.. +-=...|..|...+-.+|+.-.|++-|++..+. .|+ ..+|..|
T Consensus 182 ~l~ca~s~lgnLlka~Grl~ea~~cYlkAi~~q-p~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkl--dP~f~dAYiNL 258 (966)
T KOG4626|consen 182 DLYCARSDLGNLLKAEGRLEEAKACYLKAIETQ-PCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKL--DPNFLDAYINL 258 (966)
T ss_pred chhhhhcchhHHHHhhcccchhHHHHHHHHhhC-CceeeeehhcchHHhhcchHHHHHHHHHHhhcC--CCcchHHHhhH
Confidence 44333 334444555788888888888777652 123566888888888888888888888888876 333 4678888
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcCC
Q 004470 368 IDGFCKMGNVAAAYRLFDEMRGLNIIPDLLTYTAIICGFCLTGKMVEAEKLFHEMLGRGLEPD-EIVYTALIDGYCKAGG 446 (751)
Q Consensus 368 i~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~li~~~~~~g~ 446 (751)
...|...+.+++|...|.+.....+. ..+.+..+...|..+|.++-|+..|++.++. .|+ ...|+.|..++-..|+
T Consensus 259 GnV~ke~~~~d~Avs~Y~rAl~lrpn-~A~a~gNla~iYyeqG~ldlAI~~Ykral~~--~P~F~~Ay~NlanALkd~G~ 335 (966)
T KOG4626|consen 259 GNVYKEARIFDRAVSCYLRALNLRPN-HAVAHGNLACIYYEQGLLDLAIDTYKRALEL--QPNFPDAYNNLANALKDKGS 335 (966)
T ss_pred HHHHHHHhcchHHHHHHHHHHhcCCc-chhhccceEEEEeccccHHHHHHHHHHHHhc--CCCchHHHhHHHHHHHhccc
Confidence 88888888888888888887765322 4666777777788888888888888888875 444 5678888888888888
Q ss_pred hhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 004470 447 MKKAFSLHNNMVHMRLTPNVVTYTALADGLCKSGELETANELLHEMCRKGLQLNIYTYNSIVNGLCKAGNILQAVKLMED 526 (751)
Q Consensus 447 ~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 526 (751)
+.+|.+.+++.+...+. .....+.|.+.|...|.+++|..+|....+-... -...++.|...|-++|++++|+..+++
T Consensus 336 V~ea~~cYnkaL~l~p~-hadam~NLgni~~E~~~~e~A~~ly~~al~v~p~-~aaa~nNLa~i~kqqgnl~~Ai~~Yke 413 (966)
T KOG4626|consen 336 VTEAVDCYNKALRLCPN-HADAMNNLGNIYREQGKIEEATRLYLKALEVFPE-FAAAHNNLASIYKQQGNLDDAIMCYKE 413 (966)
T ss_pred hHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHhccchHHHHHHHHHHhhChh-hhhhhhhHHHHHHhcccHHHHHHHHHH
Confidence 88888888888876433 5677888888888888888888888888765322 345678888888888888888888888
Q ss_pred HHHCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC
Q 004470 527 MEVAGFHPD-TFTYTTIMDAYCKSGEMVKAHELLRDMLDKGLQPSVVTFNVLMNGFCMSGMIEDGEKLLKWMLEKGLKPN 605 (751)
Q Consensus 527 ~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~g~~p~ 605 (751)
.... .|+ ...|+.+...|-..|+.+.|...+.+.+..+ +.-....+.|...|-..|++.+|++-+++.++. +||
T Consensus 414 alrI--~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~n-Pt~AeAhsNLasi~kDsGni~~AI~sY~~aLkl--kPD 488 (966)
T KOG4626|consen 414 ALRI--KPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQIN-PTFAEAHSNLASIYKDSGNIPEAIQSYRTALKL--KPD 488 (966)
T ss_pred HHhc--CchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhcC-cHHHHHHhhHHHHhhccCCcHHHHHHHHHHHcc--CCC
Confidence 8765 444 6778888888888888888888888888753 224567788888888888888888888888874 555
Q ss_pred H-hhHHHHHHH
Q 004470 606 A-ATYNPLIKQ 615 (751)
Q Consensus 606 ~-~~~~~l~~~ 615 (751)
. ..|..++.+
T Consensus 489 fpdA~cNllh~ 499 (966)
T KOG4626|consen 489 FPDAYCNLLHC 499 (966)
T ss_pred CchhhhHHHHH
Confidence 3 345445444
No 17
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.91 E-value=2.4e-19 Score=201.53 Aligned_cols=433 Identities=12% Similarity=-0.013 Sum_probs=294.5
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHH
Q 004470 256 TASYNIMIHCLCRFGKIKEAHLLLLQMELRGCSPDVVSFSTIINGYCYLGELQRVLKLIEEMQIKGLKPNPYTYNSVVRL 335 (751)
Q Consensus 256 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~ 335 (751)
...+......+.+.|++++|+..|++.... .|+...|..+..+|.+.|++++|++.+++..+.. +.+..+|..+..+
T Consensus 127 a~~~k~~G~~~~~~~~~~~Ai~~y~~al~~--~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a~~~~a~a 203 (615)
T TIGR00990 127 AAKLKEKGNKAYRNKDFNKAIKLYSKAIEC--KPDPVYYSNRAACHNALGDWEKVVEDTTAALELD-PDYSKALNRRANA 203 (615)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHH
Confidence 345667888999999999999999998764 4778889899999999999999999999988874 3356788889999
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 004470 336 LCKTSKVVEAETILREMMNQGIVPDNVIYTTLIDGFCKMGNVAAAYRLFDEMRGLNIIPDLLTYTAIICGFCLTGKMVEA 415 (751)
Q Consensus 336 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A 415 (751)
|...|++++|...|......+...+. ....++..+.. ..+.....+..+... ++...+..+.. +......+.+
T Consensus 204 ~~~lg~~~eA~~~~~~~~~~~~~~~~-~~~~~~~~~l~----~~a~~~~~~~l~~~~-~~~~~~~~~~~-~~~~~~~~~~ 276 (615)
T TIGR00990 204 YDGLGKYADALLDLTASCIIDGFRNE-QSAQAVERLLK----KFAESKAKEILETKP-ENLPSVTFVGN-YLQSFRPKPR 276 (615)
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCccH-HHHHHHHHHHH----HHHHHHHHHHHhcCC-CCCCCHHHHHH-HHHHccCCcc
Confidence 99999999999888776654322222 22222222222 222233333322221 12222222222 2222122222
Q ss_pred HHHHHHHHHCCCCCCH-HHHHHHHHHH---HHcCChhHHHHHHHHHHhCC-C-CCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 004470 416 EKLFHEMLGRGLEPDE-IVYTALIDGY---CKAGGMKKAFSLHNNMVHMR-L-TPNVVTYTALADGLCKSGELETANELL 489 (751)
Q Consensus 416 ~~~~~~m~~~~~~p~~-~~~~~li~~~---~~~g~~~~A~~~~~~~~~~~-~-~~~~~~~~~li~~~~~~g~~~~A~~l~ 489 (751)
..-+.+..+. .+.. ..+..+...+ ...+++++|...|++..+.+ . +.....+..+...+...|++++|+..+
T Consensus 277 ~~~~~~~~~~--~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~ 354 (615)
T TIGR00990 277 PAGLEDSNEL--DEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADL 354 (615)
T ss_pred hhhhhccccc--ccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 2222211111 1111 1111111111 23467888999998888764 1 224556778888888889999999999
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCC
Q 004470 490 HEMCRKGLQLNIYTYNSIVNGLCKAGNILQAVKLMEDMEVAGFHPDTFTYTTIMDAYCKSGEMVKAHELLRDMLDKGLQP 569 (751)
Q Consensus 490 ~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p 569 (751)
++..+.... +...|..+...+...|++++|...++++.+.. +.+...|..+...+...|++++|...|++.++.. +.
T Consensus 355 ~kal~l~P~-~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~-P~ 431 (615)
T TIGR00990 355 SKSIELDPR-VTQSYIKRASMNLELGDPDKAEEDFDKALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLD-PD 431 (615)
T ss_pred HHHHHcCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-cc
Confidence 888876422 45677788888888899999999998887765 5567888888888888999999999998888764 44
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH------H
Q 004470 570 SVVTFNVLMNGFCMSGMIEDGEKLLKWMLEKGLKPNAATYNPLIKQHCLRNDMRTTAKIYKGMCAQGITPDGN------T 643 (751)
Q Consensus 570 ~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~------~ 643 (751)
+...+..+...+.+.|++++|+..+++.++.. +.+...++.+...+...|++++|.+.|++.++.....+.. .
T Consensus 432 ~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l 510 (615)
T TIGR00990 432 FIFSHIQLGVTQYKEGSIASSMATFRRCKKNF-PEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPL 510 (615)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHH
Confidence 67777788888888899999999998888752 2356778888888888899999999998888743211111 1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 004470 644 YNILLQGHCKARNMKEAWFLHKEMVQKGFNLTTSSYNALIKGFLKRKKYLEARELFEEMRRG 705 (751)
Q Consensus 644 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 705 (751)
++.....+...|++++|.++++++++.++. +...+..++..+.+.|++++|++.|+++.+.
T Consensus 511 ~~~a~~~~~~~~~~~eA~~~~~kAl~l~p~-~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l 571 (615)
T TIGR00990 511 INKALALFQWKQDFIEAENLCEKALIIDPE-CDIAVATMAQLLLQQGDVDEALKLFERAAEL 571 (615)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 122222334468888999988888877544 5567888888888889999999988888775
No 18
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.90 E-value=8.5e-19 Score=197.13 Aligned_cols=427 Identities=12% Similarity=0.014 Sum_probs=308.1
Q ss_pred HHHHhCCCCHHHHHHHHHhchhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCH
Q 004470 228 SRLSNTCDGLRMVVKSFTEFPELGICWNTASYNIMIHCLCRFGKIKEAHLLLLQMELRGCSPDVVSFSTIINGYCYLGEL 307 (751)
Q Consensus 228 ~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~ 307 (751)
+..+...|++++|+..|++++... |+...|..+..+|.+.|++++|++.++...+... .+...|..+..+|...|++
T Consensus 134 G~~~~~~~~~~~Ai~~y~~al~~~--p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p-~~~~a~~~~a~a~~~lg~~ 210 (615)
T TIGR00990 134 GNKAYRNKDFNKAIKLYSKAIECK--PDPVYYSNRAACHNALGDWEKVVEDTTAALELDP-DYSKALNRRANAYDGLGKY 210 (615)
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHcCCH
Confidence 333446899999999999998874 5677899999999999999999999999887643 4677888999999999999
Q ss_pred HHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 004470 308 QRVLKLIEEMQIKGLKPNPYTYNSVVRLLCKTSKVVEAETILREMMNQGIVPDNVIYTTLIDGFCKMGNVAAAYRLFDEM 387 (751)
Q Consensus 308 ~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 387 (751)
++|+..|......+.. +......++..+.. ..+.....+..+.. +++...+..+.. |....+.+.+..-+++.
T Consensus 211 ~eA~~~~~~~~~~~~~-~~~~~~~~~~~~l~----~~a~~~~~~~l~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 283 (615)
T TIGR00990 211 ADALLDLTASCIIDGF-RNEQSAQAVERLLK----KFAESKAKEILETK-PENLPSVTFVGN-YLQSFRPKPRPAGLEDS 283 (615)
T ss_pred HHHHHHHHHHHHhCCC-ccHHHHHHHHHHHH----HHHHHHHHHHHhcC-CCCCCCHHHHHH-HHHHccCCcchhhhhcc
Confidence 9999998877654211 11111222222111 22333333333332 222223332222 32222222222222222
Q ss_pred HhCCCCCC-HHHHHHHHHH---HHhcCCHHHHHHHHHHHHHCC-CCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHHhCC
Q 004470 388 RGLNIIPD-LLTYTAIICG---FCLTGKMVEAEKLFHEMLGRG-LEP-DEIVYTALIDGYCKAGGMKKAFSLHNNMVHMR 461 (751)
Q Consensus 388 ~~~~~~p~-~~~~~~li~~---~~~~g~~~~A~~~~~~m~~~~-~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 461 (751)
.+. .|. ...+..+... ....+++++|++.|++.++.+ ..| ....+..+...+...|++++|+..+++.++..
T Consensus 284 ~~~--~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~ 361 (615)
T TIGR00990 284 NEL--DEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELD 361 (615)
T ss_pred ccc--ccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 221 111 1111111111 123478999999999999864 233 45678888888999999999999999998864
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 004470 462 LTPNVVTYTALADGLCKSGELETANELLHEMCRKGLQLNIYTYNSIVNGLCKAGNILQAVKLMEDMEVAGFHPDTFTYTT 541 (751)
Q Consensus 462 ~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 541 (751)
+. +...|..+...+...|++++|...++++.+... .+...|..+...+...|++++|...|++..+.. +.+...+..
T Consensus 362 P~-~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~-P~~~~~~~~ 438 (615)
T TIGR00990 362 PR-VTQSYIKRASMNLELGDPDKAEEDFDKALKLNS-EDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLD-PDFIFSHIQ 438 (615)
T ss_pred CC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-ccCHHHHHH
Confidence 32 466888899999999999999999999988753 367889999999999999999999999999875 566788888
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHh------hHHHHHHH
Q 004470 542 IMDAYCKSGEMVKAHELLRDMLDKGLQPSVVTFNVLMNGFCMSGMIEDGEKLLKWMLEKGLKPNAA------TYNPLIKQ 615 (751)
Q Consensus 542 li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~g~~p~~~------~~~~l~~~ 615 (751)
+...+.+.|++++|...|++.++.. +.+...++.+...+...|++++|++.|++..+.....+.. .++..+..
T Consensus 439 la~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~ 517 (615)
T TIGR00990 439 LGVTQYKEGSIASSMATFRRCKKNF-PEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALAL 517 (615)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHH
Confidence 9999999999999999999998763 5578889999999999999999999999998763221111 12222233
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 004470 616 HCLRNDMRTTAKIYKGMCAQGITPDGNTYNILLQGHCKARNMKEAWFLHKEMVQKG 671 (751)
Q Consensus 616 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 671 (751)
+...|++++|.+++++.++.+ +.+...+..++..+.+.|++++|++.|+++.+..
T Consensus 518 ~~~~~~~~eA~~~~~kAl~l~-p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l~ 572 (615)
T TIGR00990 518 FQWKQDFIEAENLCEKALIID-PECDIAVATMAQLLLQQGDVDEALKLFERAAELA 572 (615)
T ss_pred HHHhhhHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHh
Confidence 445799999999999998854 2345678889999999999999999999998763
No 19
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.89 E-value=2.6e-20 Score=198.90 Aligned_cols=306 Identities=14% Similarity=0.080 Sum_probs=199.6
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhCCCccCHHhHHHHHHHHHhCCCCHHHHHHHHHhchhcCCCcC---HHHHHHHHH
Q 004470 188 FDIFFQVLVEARKLNEARKLFEKLLNYGLVISVDSCNLFLSRLSNTCDGLRMVVKSFTEFPELGICWN---TASYNIMIH 264 (751)
Q Consensus 188 ~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~l~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~li~ 264 (751)
...++..+...|++++|+..|.++++. .|+.......++.++...|++++|..+++.+...+..++ ..++..++.
T Consensus 38 ~y~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~ 115 (389)
T PRK11788 38 DYFKGLNFLLNEQPDKAIDLFIEMLKV--DPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQ 115 (389)
T ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhc--CcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHH
Confidence 344566677788888888888888876 455554445555555567888888888887776532221 245677777
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCc----ccHHHHHHHHHhcC
Q 004470 265 CLCRFGKIKEAHLLLLQMELRGCSPDVVSFSTIINGYCYLGELQRVLKLIEEMQIKGLKPNP----YTYNSVVRLLCKTS 340 (751)
Q Consensus 265 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~----~~~~~li~~~~~~g 340 (751)
.|.+.|++++|..+|+++.+.. +++..+++.++..+.+.|++++|.+.++.+.+.+..+.. ..+..+...+.+.|
T Consensus 116 ~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~ 194 (389)
T PRK11788 116 DYLKAGLLDRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARG 194 (389)
T ss_pred HHHHCCCHHHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCC
Confidence 7888888888888888777642 245667777777788888888888888877765432211 13445566666777
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 004470 341 KVVEAETILREMMNQGIVPDNVIYTTLIDGFCKMGNVAAAYRLFDEMRGLNIIPDLLTYTAIICGFCLTGKMVEAEKLFH 420 (751)
Q Consensus 341 ~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 420 (751)
++++|...++++.+.. +.+...+..+...|.+.|++++|.++++++.+.+......+++.++.+|+..|++++|...++
T Consensus 195 ~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~ 273 (389)
T PRK11788 195 DLDAARALLKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLR 273 (389)
T ss_pred CHHHHHHHHHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 7777777777776653 234456666667777777777777777777654332223456666677777777777777777
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh---cCCHHHHHHHHHHHHHcCC
Q 004470 421 EMLGRGLEPDEIVYTALIDGYCKAGGMKKAFSLHNNMVHMRLTPNVVTYTALADGLCK---SGELETANELLHEMCRKGL 497 (751)
Q Consensus 421 ~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~---~g~~~~A~~l~~~m~~~g~ 497 (751)
++.+. .|+...+..++..+.+.|++++|..+++++.+. .|+..+++.++..++. .|+.+++..++++|.+.++
T Consensus 274 ~~~~~--~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~ 349 (389)
T PRK11788 274 RALEE--YPGADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQL 349 (389)
T ss_pred HHHHh--CCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHHH
Confidence 76654 344445566666677777777777777666654 3566666666665554 3466667777776666555
Q ss_pred CCCH
Q 004470 498 QLNI 501 (751)
Q Consensus 498 ~~~~ 501 (751)
.|++
T Consensus 350 ~~~p 353 (389)
T PRK11788 350 KRKP 353 (389)
T ss_pred hCCC
Confidence 5444
No 20
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.89 E-value=4.9e-20 Score=196.73 Aligned_cols=298 Identities=17% Similarity=0.131 Sum_probs=137.6
Q ss_pred HHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHHcCChh
Q 004470 372 CKMGNVAAAYRLFDEMRGLNIIPDLLTYTAIICGFCLTGKMVEAEKLFHEMLGRGLEPD---EIVYTALIDGYCKAGGMK 448 (751)
Q Consensus 372 ~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~---~~~~~~li~~~~~~g~~~ 448 (751)
...|++++|...|+++.+.++. +..++..+...+...|++++|..+++.+...+..++ ...+..++..|.+.|+++
T Consensus 46 ~~~~~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~~ 124 (389)
T PRK11788 46 LLNEQPDKAIDLFIEMLKVDPE-TVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLLD 124 (389)
T ss_pred HhcCChHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCHH
Confidence 3444444444444444443221 233444444444444555555554444443321111 123444444555555555
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH----HHHHHHHHHHHHcCCHHHHHHHH
Q 004470 449 KAFSLHNNMVHMRLTPNVVTYTALADGLCKSGELETANELLHEMCRKGLQLNI----YTYNSIVNGLCKAGNILQAVKLM 524 (751)
Q Consensus 449 ~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~----~~~~~li~~~~~~g~~~~A~~~~ 524 (751)
+|..+|+++.+.. +.+..++..++..+.+.|++++|.+.++.+.+.+..+.. ..+..+...+.+.|++++|...+
T Consensus 125 ~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~ 203 (389)
T PRK11788 125 RAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARALL 203 (389)
T ss_pred HHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 5555555554432 123444555555555555555555555555444322111 12233444445555555555555
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCC
Q 004470 525 EDMEVAGFHPDTFTYTTIMDAYCKSGEMVKAHELLRDMLDKGLQPSVVTFNVLMNGFCMSGMIEDGEKLLKWMLEKGLKP 604 (751)
Q Consensus 525 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~g~~p 604 (751)
+++.+.. +.+...+..+...+.+.|++++|.++++++.+.+......+++.++.+|+..|++++|...++++.+. .|
T Consensus 204 ~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~--~p 280 (389)
T PRK11788 204 KKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEE--YP 280 (389)
T ss_pred HHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CC
Confidence 5554432 22344444555555555555555555555554321111234445555555555555555555555443 23
Q ss_pred CHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh---cCCHHHHHHHHHHHHHCCCCCCH
Q 004470 605 NAATYNPLIKQHCLRNDMRTTAKIYKGMCAQGITPDGNTYNILLQGHCK---ARNMKEAWFLHKEMVQKGFNLTT 676 (751)
Q Consensus 605 ~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~---~g~~~~A~~~~~~~~~~~~~p~~ 676 (751)
+...+..++..+.+.|++++|.++++++.+. .|+..++..++..++. .|+.++|+.++++|.++++.|++
T Consensus 281 ~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p 353 (389)
T PRK11788 281 GADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKP 353 (389)
T ss_pred CchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCCC
Confidence 3333444455555555555555555555442 3444444444444442 23455555555555544433333
No 21
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.88 E-value=2.7e-18 Score=192.14 Aligned_cols=336 Identities=12% Similarity=0.038 Sum_probs=244.9
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHcCCCCCchhhhHHHHHHHHHhhhcCCCChhhHHHHHHHHHhcCChhHHHHHHH
Q 004470 130 EARCIVVQISVAAKDLKTAHGLIHDFWAKPNLDASIAFTHFVERLIYTYKDWGSDPHVFDIFFQVLVEARKLNEARKLFE 209 (751)
Q Consensus 130 ~~~~~~~~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 209 (751)
......+.-+..+|++++|..++...+... |.++.++..|+.++...|++++|...|+
T Consensus 43 ~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~----------------------p~~~~~l~~l~~~~l~~g~~~~A~~~l~ 100 (656)
T PRK15174 43 QNIILFAIACLRKDETDVGLTLLSDRVLTA----------------------KNGRDLLRRWVISPLASSQPDAVLQVVN 100 (656)
T ss_pred cCHHHHHHHHHhcCCcchhHHHhHHHHHhC----------------------CCchhHHHHHhhhHhhcCCHHHHHHHHH
Confidence 334445556667888888888888877654 5666677778888888888888888888
Q ss_pred HHHhCCCccCHHhHHHHHHHHHhCCCCHHHHHHHHHhchhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 004470 210 KLLNYGLVISVDSCNLFLSRLSNTCDGLRMVVKSFTEFPELGICWNTASYNIMIHCLCRFGKIKEAHLLLLQMELRGCSP 289 (751)
Q Consensus 210 ~~~~~g~~p~~~~~~~ll~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 289 (751)
++++. .|+.......++.++...|++++|...|+++....+. +...+..++..+...|++++|...++.+......
T Consensus 101 ~~l~~--~P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~P~-~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~- 176 (656)
T PRK15174 101 KLLAV--NVCQPEDVLLVASVLLKSKQYATVADLAEQAWLAFSG-NSQIFALHLRTLVLMDKELQAISLARTQAQEVPP- 176 (656)
T ss_pred HHHHh--CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCC-
Confidence 88876 6776666666666666778888888888888877544 6777888888888888888888888877654432
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 004470 290 DVVSFSTIINGYCYLGELQRVLKLIEEMQIKGLKPNPYTYNSVVRLLCKTSKVVEAETILREMMNQGIVPDNVIYTTLID 369 (751)
Q Consensus 290 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~ 369 (751)
+...+..+ ..+...|++++|...++.+.+....++...+..+...+...|++++|...++++.... +.+...+..+..
T Consensus 177 ~~~a~~~~-~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~-p~~~~~~~~Lg~ 254 (656)
T PRK15174 177 RGDMIATC-LSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARG-LDGAALRRSLGL 254 (656)
T ss_pred CHHHHHHH-HHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHH
Confidence 23333333 3467788888888888887766433344455555677788888888888888888764 345667777888
Q ss_pred HHHHcCCHHH----HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC
Q 004470 370 GFCKMGNVAA----AYRLFDEMRGLNIIPDLLTYTAIICGFCLTGKMVEAEKLFHEMLGRGLEPDEIVYTALIDGYCKAG 445 (751)
Q Consensus 370 ~~~~~g~~~~----A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g 445 (751)
.|.+.|++++ |...|++..+..+. +...+..+...+...|++++|+..+++.+... +.+...+..+...+.+.|
T Consensus 255 ~l~~~G~~~eA~~~A~~~~~~Al~l~P~-~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~-P~~~~a~~~La~~l~~~G 332 (656)
T PRK15174 255 AYYQSGRSREAKLQAAEHWRHALQFNSD-NVRIVTLYADALIRTGQNEKAIPLLQQSLATH-PDLPYVRAMYARALRQVG 332 (656)
T ss_pred HHHHcCCchhhHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCC
Confidence 8888888875 78888888776543 56777888888888888888888888887753 334566677778888888
Q ss_pred ChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 004470 446 GMKKAFSLHNNMVHMRLTPNVVTYTALADGLCKSGELETANELLHEMCRKG 496 (751)
Q Consensus 446 ~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g 496 (751)
++++|...++++.+.++. +...+..+...+...|+.++|...|++..+..
T Consensus 333 ~~~eA~~~l~~al~~~P~-~~~~~~~~a~al~~~G~~deA~~~l~~al~~~ 382 (656)
T PRK15174 333 QYTAASDEFVQLAREKGV-TSKWNRYAAAALLQAGKTSEAESVFEHYIQAR 382 (656)
T ss_pred CHHHHHHHHHHHHHhCcc-chHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 888888888888775432 22334445667788888888888888887763
No 22
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.87 E-value=4.7e-16 Score=165.07 Aligned_cols=586 Identities=12% Similarity=0.065 Sum_probs=307.2
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHHHHcCCCCCchhhhHHHHHHHHHhhhcCCCChhhHHHHHHHHHhcCChhHHHHHH
Q 004470 129 LEARCIVVQISVAAKDLKTAHGLIHDFWAKPNLDASIAFTHFVERLIYTYKDWGSDPHVFDIFFQVLVEARKLNEARKLF 208 (751)
Q Consensus 129 ~~~~~~~~~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 208 (751)
+......+..+...|++++|..++.++++.+ |.++.+|..|+.+|-..|+.++++...
T Consensus 139 l~~ll~eAN~lfarg~~eeA~~i~~EvIkqd----------------------p~~~~ay~tL~~IyEqrGd~eK~l~~~ 196 (895)
T KOG2076|consen 139 LRQLLGEANNLFARGDLEEAEEILMEVIKQD----------------------PRNPIAYYTLGEIYEQRGDIEKALNFW 196 (895)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC----------------------ccchhhHHHHHHHHHHcccHHHHHHHH
Confidence 3444555666666677777777777777665 556666777777777777777777666
Q ss_pred HHHHhCCCccCHHhHHHHHHHHHhCCCCHHHHHHHHHhchhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 004470 209 EKLLNYGLVISVDSCNLFLSRLSNTCDGLRMVVKSFTEFPELGICWNTASYNIMIHCLCRFGKIKEAHLLLLQMELRGCS 288 (751)
Q Consensus 209 ~~~~~~g~~p~~~~~~~ll~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 288 (751)
-.+... .|+....=..++.+..+.|.+++|+-.|.++++..|. |...+-.-+..|-+.|+...|.+-|.++.....+
T Consensus 197 llAAHL--~p~d~e~W~~ladls~~~~~i~qA~~cy~rAI~~~p~-n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~ 273 (895)
T KOG2076|consen 197 LLAAHL--NPKDYELWKRLADLSEQLGNINQARYCYSRAIQANPS-NWELIYERSSLYQKTGDLKRAMETFLQLLQLDPP 273 (895)
T ss_pred HHHHhc--CCCChHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCc-chHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCc
Confidence 555544 3333322233444444667777777777777766544 3333333344566667777777777776654321
Q ss_pred CCHHHHH----HHHHHHHhcCCHHHHHHHHHHHHHC-CCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHHCC-------
Q 004470 289 PDVVSFS----TIINGYCYLGELQRVLKLIEEMQIK-GLKPNPYTYNSVVRLLCKTSKVVEAETILREMMNQG------- 356 (751)
Q Consensus 289 p~~~~~~----~li~~~~~~g~~~~A~~~~~~m~~~-g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g------- 356 (751)
.|..-.. .++..+...++-+.|++.++..... +-..+...++.++..+.+...++.|......+....
T Consensus 274 ~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e 353 (895)
T KOG2076|consen 274 VDIERIEDLIRRVAHYFITHNERERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSE 353 (895)
T ss_pred hhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhh
Confidence 1211111 2334455555556666666666542 112345556666666666666666666665555411
Q ss_pred --------------------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHH
Q 004470 357 --------------------IVPDNVIYTTLIDGFCKMGNVAAAYRLFDEMRGLN--IIPDLLTYTAIICGFCLTGKMVE 414 (751)
Q Consensus 357 --------------------~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~--~~p~~~~~~~li~~~~~~g~~~~ 414 (751)
+.++..+. -++-++......+....+.......+ +.-+...|.-+..++...|++.+
T Consensus 354 ~~~~~~~~~~~~~~~~~~~~~s~~l~v~-rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~ 432 (895)
T KOG2076|consen 354 WDTDERRREEPNALCEVGKELSYDLRVI-RLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKE 432 (895)
T ss_pred hhhhhhccccccccccCCCCCCccchhH-hHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHH
Confidence 11222221 11122222222222222222233333 33345556666667777777777
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004470 415 AEKLFHEMLGRGLEPDEIVYTALIDGYCKAGGMKKAFSLHNNMVHMRLTPNVVTYTALADGLCKSGELETANELLHEMCR 494 (751)
Q Consensus 415 A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 494 (751)
|+.+|..+......-+...|-.+..+|...|.+++|.+.|+.++...+. +...-..|...+.+.|+.++|.+.++.+..
T Consensus 433 Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~p~-~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~ 511 (895)
T KOG2076|consen 433 ALRLLSPITNREGYQNAFVWYKLARCYMELGEYEEAIEFYEKVLILAPD-NLDARITLASLYQQLGNHEKALETLEQIIN 511 (895)
T ss_pred HHHHHHHHhcCccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-chhhhhhHHHHHHhcCCHHHHHHHHhcccC
Confidence 7777777666533334556666677777777777777777776665332 455555666666677777777777666432
Q ss_pred c--------CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC------------------------------------
Q 004470 495 K--------GLQLNIYTYNSIVNGLCKAGNILQAVKLMEDMEVA------------------------------------ 530 (751)
Q Consensus 495 ~--------g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~------------------------------------ 530 (751)
- +..|+..........+.+.|+.++=+.....|...
T Consensus 512 ~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk~E~fi~t~~~Lv~~~~~~~~~f~~~~k~r~~~~~~~~~~~~~~~~~~~~~ 591 (895)
T KOG2076|consen 512 PDGRNAEACAWEPERRILAHRCDILFQVGKREEFINTASTLVDDFLKKRYIFPRNKKKRRRAIAGTTSKRYSELLKQIIR 591 (895)
T ss_pred CCccchhhccccHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHhhccccccccchhHHHHHH
Confidence 1 22333333333444455555554433332222110
Q ss_pred ---------------------------CCCCCH--HHHHHHHHHHHHcCCHHHHHHHHHHHHhCCC-CCCHH----HHHH
Q 004470 531 ---------------------------GFHPDT--FTYTTIMDAYCKSGEMVKAHELLRDMLDKGL-QPSVV----TFNV 576 (751)
Q Consensus 531 ---------------------------~~~~~~--~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-~p~~~----~~~~ 576 (751)
|..-+. ..+.-++..+++.+++++|..+...+..... ..+.. .-..
T Consensus 592 ~~~k~~~~~~~~~~l~d~~~~~~~e~~~Lsiddwfel~~e~i~~L~k~~r~qeAl~vv~~a~~~~~f~~~~~~~k~l~~~ 671 (895)
T KOG2076|consen 592 AREKATDDNVMEKALSDGTEFRAVELRGLSIDDWFELFRELILSLAKLQRVQEALSVVFTALEAYIFFQDSEIRKELQFL 671 (895)
T ss_pred HHhccCchHHhhhcccchhhhhhhhhccCcHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhccHHHHHHHHHH
Confidence 000000 1123344555566666666666555543211 01111 1122
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHc-CCC--C-CHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 004470 577 LMNGFCMSGMIEDGEKLLKWMLEK-GLK--P-NAATYNPLIKQHCLRNDMRTTAKIYKGMCAQGITPDGNTYNILLQGHC 652 (751)
Q Consensus 577 li~~~~~~g~~~~A~~l~~~~~~~-g~~--p-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~ 652 (751)
.+.+.+..+++..|...++.|... +.. | ....|+.......+.++-.--.+++..+.......+...+....+.+.
T Consensus 672 ~l~~s~~~~d~~~a~~~lR~~i~~~~~~~~~~q~~l~n~~~s~~~~~~q~v~~~R~~~~~~~~~~~~~~~l~~i~gh~~~ 751 (895)
T KOG2076|consen 672 GLKASLYARDPGDAFSYLRSVITQFQFYLDVYQLNLWNLDFSYFSKYGQRVCYLRLIMRLLVKNKDDTPPLALIYGHNLF 751 (895)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccCCcceeeeechhHh
Confidence 333444556666666666666543 111 1 112333333333333333222233332222111111222222233345
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----------cCCHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHH
Q 004470 653 KARNMKEAWFLHKEMVQKGFNLTTSSYNALIKGFLK----------RKKYLEARELFEEMRRGG-LVADREIYYFFVDIN 721 (751)
Q Consensus 653 ~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~----------~g~~~~A~~~~~~~~~~~-~~~~~~~~~~l~~~~ 721 (751)
..+.+..|+..+-++....+. +|.+-..++-++.. +-..-.++.++.+..+.. .....+.++.++++|
T Consensus 752 ~~~s~~~Al~~y~ra~~~~pd-~Pl~nl~lglafih~a~qr~v~~Rh~~i~qG~afL~RY~~lR~~~~~QEa~YNigRay 830 (895)
T KOG2076|consen 752 VNASFKHALQEYMRAFRQNPD-SPLINLCLGLAFIHLALQRRVSNRHAQIAQGFAFLKRYKELRRCEEKQEAFYNIGRAY 830 (895)
T ss_pred hccchHHHHHHHHHHHHhCCC-CcHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHH
Confidence 667888899888777765433 34443344444331 122345666666665532 122567888899999
Q ss_pred HhcCChhHHHHHHHHHHHcCC
Q 004470 722 FEEGNTEITLELCDAAIECYL 742 (751)
Q Consensus 722 ~~~g~~~~A~~~~~~~~~~~~ 742 (751)
...|=..-|..+|+++++-.+
T Consensus 831 h~~gl~~LA~~YYekvL~~~p 851 (895)
T KOG2076|consen 831 HQIGLVHLAVSYYEKVLEVSP 851 (895)
T ss_pred HHcccHHHHHHHHHHHhCCCc
Confidence 999999999999999998863
No 23
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.87 E-value=6.3e-18 Score=189.27 Aligned_cols=336 Identities=12% Similarity=0.070 Sum_probs=274.8
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHhCCCccCHHhHHHHHHHHHhCCCCHHHHHHHHHhchhcCCCcCHHHHHHHHHH
Q 004470 186 HVFDIFFQVLVEARKLNEARKLFEKLLNYGLVISVDSCNLFLSRLSNTCDGLRMVVKSFTEFPELGICWNTASYNIMIHC 265 (751)
Q Consensus 186 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 265 (751)
.-...++..+.++|++++|+.+++..+.. .|+.......++......|++++|...|+++.+..|. +...+..+...
T Consensus 43 ~~~~~~~~~~~~~g~~~~A~~l~~~~l~~--~p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~-~~~a~~~la~~ 119 (656)
T PRK15174 43 QNIILFAIACLRKDETDVGLTLLSDRVLT--AKNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVNVC-QPEDVLLVASV 119 (656)
T ss_pred cCHHHHHHHHHhcCCcchhHHHhHHHHHh--CCCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHH
Confidence 34556788899999999999999999988 5555555555555555689999999999999998766 78889999999
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCHHHH
Q 004470 266 LCRFGKIKEAHLLLLQMELRGCSPDVVSFSTIINGYCYLGELQRVLKLIEEMQIKGLKPNPYTYNSVVRLLCKTSKVVEA 345 (751)
Q Consensus 266 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A 345 (751)
+.+.|++++|+..|+++.... +.+...+..+...+...|++++|...++.+...... +...+..+ ..+...|++++|
T Consensus 120 l~~~g~~~~Ai~~l~~Al~l~-P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~-~~~a~~~~-~~l~~~g~~~eA 196 (656)
T PRK15174 120 LLKSKQYATVADLAEQAWLAF-SGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPP-RGDMIATC-LSFLNKSRLPED 196 (656)
T ss_pred HHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCC-CHHHHHHH-HHHHHcCCHHHH
Confidence 999999999999999998753 245778888999999999999999999988766322 33333333 357889999999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHH----HHHHHHH
Q 004470 346 ETILREMMNQGIVPDNVIYTTLIDGFCKMGNVAAAYRLFDEMRGLNIIPDLLTYTAIICGFCLTGKMVE----AEKLFHE 421 (751)
Q Consensus 346 ~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~----A~~~~~~ 421 (751)
...++.+++....++...+..+...+.+.|++++|...+++..+.... +...+..+...+...|++++ |+..+++
T Consensus 197 ~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~-~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~ 275 (656)
T PRK15174 197 HDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLD-GAALRRSLGLAYYQSGRSREAKLQAAEHWRH 275 (656)
T ss_pred HHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHcCCchhhHHHHHHHHHH
Confidence 999999888743344555666678899999999999999999987644 67788889999999999986 8999999
Q ss_pred HHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH
Q 004470 422 MLGRGLEPDEIVYTALIDGYCKAGGMKKAFSLHNNMVHMRLTPNVVTYTALADGLCKSGELETANELLHEMCRKGLQLNI 501 (751)
Q Consensus 422 m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~ 501 (751)
.+... +.+...+..+...+...|++++|...+++..+..+. +...+..+...+.+.|++++|...++.+.+.+.. +.
T Consensus 276 Al~l~-P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~-~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~-~~ 352 (656)
T PRK15174 276 ALQFN-SDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPD-LPYVRAMYARALRQVGQYTAASDEFVQLAREKGV-TS 352 (656)
T ss_pred HHhhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc-ch
Confidence 98763 346778899999999999999999999999987644 5677888999999999999999999999887432 33
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHCC
Q 004470 502 YTYNSIVNGLCKAGNILQAVKLMEDMEVAG 531 (751)
Q Consensus 502 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 531 (751)
..+..+..++...|+.++|...|++..+..
T Consensus 353 ~~~~~~a~al~~~G~~deA~~~l~~al~~~ 382 (656)
T PRK15174 353 KWNRYAAAALLQAGKTSEAESVFEHYIQAR 382 (656)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 344445678899999999999999988763
No 24
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.87 E-value=8.9e-18 Score=192.24 Aligned_cols=404 Identities=10% Similarity=0.008 Sum_probs=213.2
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 004470 290 DVVSFSTIINGYCYLGELQRVLKLIEEMQIKGLKPNPYTYNSVVRLLCKTSKVVEAETILREMMNQGIVPDNVIYTTLID 369 (751)
Q Consensus 290 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~ 369 (751)
+.....-.+......|+.++|++++.+..... +.+...+..+...+...|++++|.+++++.++.. +.+...+..++.
T Consensus 14 ~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~-~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~ 91 (765)
T PRK10049 14 SNNQIADWLQIALWAGQDAEVITVYNRYRVHM-QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLE-PQNDDYQRGLIL 91 (765)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 44444455666677788888888888776521 3344457777888888888888888888877752 334566677777
Q ss_pred HHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhH
Q 004470 370 GFCKMGNVAAAYRLFDEMRGLNIIPDLLTYTAIICGFCLTGKMVEAEKLFHEMLGRGLEPDEIVYTALIDGYCKAGGMKK 449 (751)
Q Consensus 370 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~ 449 (751)
.+.+.|++++|...+++..+..+. +.. +..+...+...|+.++|+..++++++.. +.+...+..+...+...|..++
T Consensus 92 ~l~~~g~~~eA~~~l~~~l~~~P~-~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~-P~~~~~~~~la~~l~~~~~~e~ 168 (765)
T PRK10049 92 TLADAGQYDEALVKAKQLVSGAPD-KAN-LLALAYVYKRAGRHWDELRAMTQALPRA-PQTQQYPTEYVQALRNNRLSAP 168 (765)
T ss_pred HHHHCCCHHHHHHHHHHHHHhCCC-CHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCChHH
Confidence 788888888888888888776432 444 7777777778888888888888887762 2245555566777777777777
Q ss_pred HHHHHHHHHhCCCCCCH------HHHHHHHHHHH-----hcCCH---HHHHHHHHHHHHc-CCCCCHH-HH----HHHHH
Q 004470 450 AFSLHNNMVHMRLTPNV------VTYTALADGLC-----KSGEL---ETANELLHEMCRK-GLQLNIY-TY----NSIVN 509 (751)
Q Consensus 450 A~~~~~~~~~~~~~~~~------~~~~~li~~~~-----~~g~~---~~A~~l~~~m~~~-g~~~~~~-~~----~~li~ 509 (751)
|+..++.+.. .|+. .....++.... ..+++ ++|++.++.+.+. ...|+.. .+ ...+.
T Consensus 169 Al~~l~~~~~---~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~ 245 (765)
T PRK10049 169 ALGAIDDANL---TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLG 245 (765)
T ss_pred HHHHHHhCCC---CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHH
Confidence 8877766554 1221 01111111111 11122 4555555555543 1111111 11 01122
Q ss_pred HHHHcCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCC---CHHHHHHHHHHHHhcC
Q 004470 510 GLCKAGNILQAVKLMEDMEVAGFH-PDTFTYTTIMDAYCKSGEMVKAHELLRDMLDKGLQP---SVVTFNVLMNGFCMSG 585 (751)
Q Consensus 510 ~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p---~~~~~~~li~~~~~~g 585 (751)
.+...|++++|+..|+.+.+.+.+ |+. ....+...|...|++++|+..|+++.+..... .......+..++...|
T Consensus 246 ~Ll~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g 324 (765)
T PRK10049 246 ALLARDRYKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESE 324 (765)
T ss_pred HHHHhhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcc
Confidence 334455666666666665554311 111 11123445556666666666666555432110 1223444444555556
Q ss_pred ChhHHHHHHHHHHHcCC-----------CCC---HhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 004470 586 MIEDGEKLLKWMLEKGL-----------KPN---AATYNPLIKQHCLRNDMRTTAKIYKGMCAQGITPDGNTYNILLQGH 651 (751)
Q Consensus 586 ~~~~A~~l~~~~~~~g~-----------~p~---~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~ 651 (751)
++++|..+++.+.+... .|+ ...+..+...+...|+.++|++.++++.... +.+...+..++..+
T Consensus 325 ~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~-P~n~~l~~~lA~l~ 403 (765)
T PRK10049 325 NYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNA-PGNQGLRIDYASVL 403 (765)
T ss_pred cHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 66666666665554311 011 1122233334444444444444444444421 22333444444444
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004470 652 CKARNMKEAWFLHKEMVQKGFNLTTSSYNALIKGFLKRKKYLEARELFEEMRR 704 (751)
Q Consensus 652 ~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 704 (751)
...|++++|++.++++++..+. +...+..++..+...|++++|..+++++++
T Consensus 404 ~~~g~~~~A~~~l~~al~l~Pd-~~~l~~~~a~~al~~~~~~~A~~~~~~ll~ 455 (765)
T PRK10049 404 QARGWPRAAENELKKAEVLEPR-NINLEVEQAWTALDLQEWRQMDVLTDDVVA 455 (765)
T ss_pred HhcCCHHHHHHHHHHHHhhCCC-ChHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 4444444444444444443322 233444444444444444444444444444
No 25
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.87 E-value=4.5e-15 Score=151.44 Aligned_cols=604 Identities=13% Similarity=0.065 Sum_probs=465.3
Q ss_pred ChHHHHHHHHhhhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHcCCCCCchh-------hhHHHHHHHH-HhhhcC
Q 004470 110 DYRLVLDFFDWACLRREPILEARCIVVQISVAAKDLKTAHGLIHDFWAKPNLDASI-------AFTHFVERLI-YTYKDW 181 (751)
Q Consensus 110 ~~~~al~~f~~~~~~~~~~~~~~~~~~~~l~~~~~~~~a~~~l~~~~~~~~~~~~~-------~~~~~~~~l~-~~~~~~ 181 (751)
|-..|.-.++.+...+|.|..+...-+++--..|+++.|+.++.+=+......... ...+....++ ...+.+
T Consensus 266 DikKaR~llKSvretnP~hp~gWIAsArLEEvagKl~~Ar~~I~~GCe~cprSeDvWLeaiRLhp~d~aK~vvA~Avr~~ 345 (913)
T KOG0495|consen 266 DIKKARLLLKSVRETNPKHPPGWIASARLEEVAGKLSVARNLIMKGCEECPRSEDVWLEAIRLHPPDVAKTVVANAVRFL 345 (913)
T ss_pred HHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHhhHHHHHHHHHHHHHhhCCchHHHHHHHHhcCChHHHHHHHHHHHHhC
Confidence 44678888888888899999999999999899999999999988755433110000 0001112222 234556
Q ss_pred CCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCccCHHhHHHHHHHHHhCCCCHHHHHHHHHhchhcCCCcCHHHHHH
Q 004470 182 GSDPHVFDIFFQVLVEARKLNEARKLFEKLLNYGLVISVDSCNLFLSRLSNTCDGLRMVVKSFTEFPELGICWNTASYNI 261 (751)
Q Consensus 182 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 261 (751)
|.++..|.--+.. ..+...=..+++++++. .|+.+. +-...+ .....+.|+.++.++.+.-+. +...|
T Consensus 346 P~Sv~lW~kA~dL---E~~~~~K~RVlRKALe~--iP~sv~---LWKaAV-elE~~~darilL~rAveccp~-s~dLw-- 413 (913)
T KOG0495|consen 346 PTSVRLWLKAADL---ESDTKNKKRVLRKALEH--IPRSVR---LWKAAV-ELEEPEDARILLERAVECCPQ-SMDLW-- 413 (913)
T ss_pred CCChhhhhhHHhh---hhHHHHHHHHHHHHHHh--CCchHH---HHHHHH-hccChHHHHHHHHHHHHhccc-hHHHH--
Confidence 7776666433322 23344445677888776 566542 222222 234556699999999887322 44444
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH----HHCCCCCCcccHHHHHHHHH
Q 004470 262 MIHCLCRFGKIKEAHLLLLQMELRGCSPDVVSFSTIINGYCYLGELQRVLKLIEEM----QIKGLKPNPYTYNSVVRLLC 337 (751)
Q Consensus 262 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m----~~~g~~p~~~~~~~li~~~~ 337 (751)
-+|.+..-++.|..++....+. ++.+...|.+-...--..|+.+...+++.+- ...|+..+...|..=...|-
T Consensus 414 --lAlarLetYenAkkvLNkaRe~-iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e 490 (913)
T KOG0495|consen 414 --LALARLETYENAKKVLNKAREI-IPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACE 490 (913)
T ss_pred --HHHHHHHHHHHHHHHHHHHHhh-CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHh
Confidence 4566778899999999998764 6678888888777777899999988888764 45688888888888888888
Q ss_pred hcCCHHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 004470 338 KTSKVVEAETILREMMNQGIVP--DNVIYTTLIDGFCKMGNVAAAYRLFDEMRGLNIIPDLLTYTAIICGFCLTGKMVEA 415 (751)
Q Consensus 338 ~~g~~~~A~~~~~~m~~~g~~p--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A 415 (751)
..|..-.+..+....+..|++- -..+|+.-.+.|.+.+.++-|..+|....+.-+. +...|...+..--..|..++-
T Consensus 491 ~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqvfp~-k~slWlra~~~ek~hgt~Esl 569 (913)
T KOG0495|consen 491 DAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQVFPC-KKSLWLRAAMFEKSHGTRESL 569 (913)
T ss_pred hcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhhccc-hhHHHHHHHHHHHhcCcHHHH
Confidence 9999999999999999888753 3468888889999999999999999999886433 667788777777778999999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 004470 416 EKLFHEMLGRGLEPDEIVYTALIDGYCKAGGMKKAFSLHNNMVHMRLTPNVVTYTALADGLCKSGELETANELLHEMCRK 495 (751)
Q Consensus 416 ~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 495 (751)
..+|+++... ++-....|......+-..|+...|..++..+.+..+. +...|..-+.......+++.|..+|.+....
T Consensus 570 ~Allqkav~~-~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pn-seeiwlaavKle~en~e~eraR~llakar~~ 647 (913)
T KOG0495|consen 570 EALLQKAVEQ-CPKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPN-SEEIWLAAVKLEFENDELERARDLLAKARSI 647 (913)
T ss_pred HHHHHHHHHh-CCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCC-cHHHHHHHHHHhhccccHHHHHHHHHHHhcc
Confidence 9999999987 4446667777778888899999999999999988654 7888999999999999999999999998775
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHH
Q 004470 496 GLQLNIYTYNSIVNGLCKAGNILQAVKLMEDMEVAGFHPDTFTYTTIMDAYCKSGEMVKAHELLRDMLDKGLQPSVVTFN 575 (751)
Q Consensus 496 g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~ 575 (751)
.|+...|.--+...--.++.++|.+++++..+. ++.-...|..+.+.+.+.++.+.|.+.|..-.+. ++..+..|-
T Consensus 648 --sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~-fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~-cP~~ipLWl 723 (913)
T KOG0495|consen 648 --SGTERVWMKSANLERYLDNVEEALRLLEEALKS-FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKK-CPNSIPLWL 723 (913)
T ss_pred --CCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh-CCchHHHHHHHhHHHHHHHHHHHHHHHHHhcccc-CCCCchHHH
Confidence 566777776677777789999999999998876 2334567888889999999999999998877665 466677888
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 004470 576 VLMNGFCMSGMIEDGEKLLKWMLEKGLKPNAATYNPLIKQHCLRNDMRTTAKIYKGMCAQGITPDGNTYNILLQGHCKAR 655 (751)
Q Consensus 576 ~li~~~~~~g~~~~A~~l~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g 655 (751)
.|...--+.|.+-.|..+++...-++.. +...|...|..-.+.|+.+.|..+..++++. ++.+...|..-|...-+.+
T Consensus 724 lLakleEk~~~~~rAR~ildrarlkNPk-~~~lwle~Ir~ElR~gn~~~a~~lmakALQe-cp~sg~LWaEaI~le~~~~ 801 (913)
T KOG0495|consen 724 LLAKLEEKDGQLVRARSILDRARLKNPK-NALLWLESIRMELRAGNKEQAELLMAKALQE-CPSSGLLWAEAIWLEPRPQ 801 (913)
T ss_pred HHHHHHHHhcchhhHHHHHHHHHhcCCC-cchhHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCccchhHHHHHHhccCcc
Confidence 8888888899999999999999887544 7788999999999999999999999998875 4556777877787777777
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHH
Q 004470 656 NMKEAWFLHKEMVQKGFNLTTSSYNALIKGFLKRKKYLEARELFEEMRRGGLVADREIYYFFVDINFEEGNTEITLELCD 735 (751)
Q Consensus 656 ~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 735 (751)
+-..+...+++ ...|+.....+...+....+++.|++.|+++++.+ +.+-.+|..+...+.+.|.-++-.++++
T Consensus 802 rkTks~DALkk-----ce~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d-~d~GD~wa~fykfel~hG~eed~kev~~ 875 (913)
T KOG0495|consen 802 RKTKSIDALKK-----CEHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKD-PDNGDAWAWFYKFELRHGTEEDQKEVLK 875 (913)
T ss_pred cchHHHHHHHh-----ccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccC-CccchHHHHHHHHHHHhCCHHHHHHHHH
Confidence 65554444332 34588888899999999999999999999999975 5566788888888999999888888888
Q ss_pred HHHHcCCC
Q 004470 736 AAIECYLV 743 (751)
Q Consensus 736 ~~~~~~~~ 743 (751)
+.....+.
T Consensus 876 ~c~~~EP~ 883 (913)
T KOG0495|consen 876 KCETAEPT 883 (913)
T ss_pred HHhccCCC
Confidence 87766543
No 26
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.87 E-value=9.2e-18 Score=192.12 Aligned_cols=370 Identities=11% Similarity=0.028 Sum_probs=169.8
Q ss_pred hhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCccCHHhHHHHHHHHHhCCCCHHHHHHHHHhchhcCCCcCHHHHHHHHH
Q 004470 185 PHVFDIFFQVLVEARKLNEARKLFEKLLNYGLVISVDSCNLFLSRLSNTCDGLRMVVKSFTEFPELGICWNTASYNIMIH 264 (751)
Q Consensus 185 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 264 (751)
..++..++.++.+.|++++|.++++++++. .|+.......++.+....|++++|+..++++.+..+. +.. +..+..
T Consensus 49 a~~~~~lA~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~~P~-~~~-~~~la~ 124 (765)
T PRK10049 49 ARGYAAVAVAYRNLKQWQNSLTLWQKALSL--EPQNDDYQRGLILTLADAGQYDEALVKAKQLVSGAPD-KAN-LLALAY 124 (765)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHH-HHHHHH
Confidence 334555555666666666666666665554 3444433334444333456666666666665555333 344 555555
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCc------ccHHHHHHHHH-
Q 004470 265 CLCRFGKIKEAHLLLLQMELRGCSPDVVSFSTIINGYCYLGELQRVLKLIEEMQIKGLKPNP------YTYNSVVRLLC- 337 (751)
Q Consensus 265 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~------~~~~~li~~~~- 337 (751)
.+...|+.++|+..++++.+... .+...+..+...+...|..++|++.++.... .|+. .....+++...
T Consensus 125 ~l~~~g~~~~Al~~l~~al~~~P-~~~~~~~~la~~l~~~~~~e~Al~~l~~~~~---~p~~~~~l~~~~~~~~~r~~~~ 200 (765)
T PRK10049 125 VYKRAGRHWDELRAMTQALPRAP-QTQQYPTEYVQALRNNRLSAPALGAIDDANL---TPAEKRDLEADAAAELVRLSFM 200 (765)
T ss_pred HHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCChHHHHHHHHhCCC---CHHHHHHHHHHHHHHHHHhhcc
Confidence 55666666666666666555432 2333444455555555555556555554332 1110 00111111111
Q ss_pred ----hcCCH---HHHHHHHHHHHHC-CCCCCHH-HH----HHHHHHHHHcCCHHHHHHHHHHHHhCCCC-CCHHHHHHHH
Q 004470 338 ----KTSKV---VEAETILREMMNQ-GIVPDNV-IY----TTLIDGFCKMGNVAAAYRLFDEMRGLNII-PDLLTYTAII 403 (751)
Q Consensus 338 ----~~g~~---~~A~~~~~~m~~~-g~~p~~~-~~----~~li~~~~~~g~~~~A~~~~~~m~~~~~~-p~~~~~~~li 403 (751)
..+++ ++|++.++.+.+. ...|+.. .+ ...+..+...|++++|+..|+.+.+.+.. |+. ....+.
T Consensus 201 ~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la 279 (765)
T PRK10049 201 PTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPW-AQRWVA 279 (765)
T ss_pred cccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHH-HHHHHH
Confidence 11122 4455555555432 1111111 10 00012233445555555555555554321 221 111124
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCC---CHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCC-----------CCC---H
Q 004470 404 CGFCLTGKMVEAEKLFHEMLGRGLEP---DEIVYTALIDGYCKAGGMKKAFSLHNNMVHMRL-----------TPN---V 466 (751)
Q Consensus 404 ~~~~~~g~~~~A~~~~~~m~~~~~~p---~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-----------~~~---~ 466 (751)
..+...|++++|+..|+++....... .......+..++...|++++|..+++.+.+..+ .|+ .
T Consensus 280 ~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~ 359 (765)
T PRK10049 280 SAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWL 359 (765)
T ss_pred HHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHH
Confidence 45555555555555555554331100 112333344445555555555555555554321 111 1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 004470 467 VTYTALADGLCKSGELETANELLHEMCRKGLQLNIYTYNSIVNGLCKAGNILQAVKLMEDMEVAGFHPDTFTYTTIMDAY 546 (751)
Q Consensus 467 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~ 546 (751)
..+..+...+...|+.++|.++++++.... +-+...+..+...+...|++++|++.+++..+.. |.+...+...+..+
T Consensus 360 ~a~~~~a~~l~~~g~~~eA~~~l~~al~~~-P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~-Pd~~~l~~~~a~~a 437 (765)
T PRK10049 360 QGQSLLSQVAKYSNDLPQAEMRARELAYNA-PGNQGLRIDYASVLQARGWPRAAENELKKAEVLE-PRNINLEVEQAWTA 437 (765)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC-CCChHHHHHHHHHH
Confidence 223344445555555555555555555442 2234455555555555555555555555555443 23344444444455
Q ss_pred HHcCCHHHHHHHHHHHHhC
Q 004470 547 CKSGEMVKAHELLRDMLDK 565 (751)
Q Consensus 547 ~~~g~~~~A~~~~~~~~~~ 565 (751)
.+.|++++|..+++++++.
T Consensus 438 l~~~~~~~A~~~~~~ll~~ 456 (765)
T PRK10049 438 LDLQEWRQMDVLTDDVVAR 456 (765)
T ss_pred HHhCCHHHHHHHHHHHHHh
Confidence 5555555555555555543
No 27
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.86 E-value=6.8e-16 Score=163.83 Aligned_cols=605 Identities=13% Similarity=0.103 Sum_probs=404.6
Q ss_pred HhhcCChHHHHHHHHhhhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHcCCCCCchhhhHHHHHHHHHhhhcCCCC
Q 004470 105 MDIRSDYRLVLDFFDWACLRREPILEARCIVVQISVAAKDLKTAHGLIHDFWAKPNLDASIAFTHFVERLIYTYKDWGSD 184 (751)
Q Consensus 105 ~~~~~~~~~al~~f~~~~~~~~~~~~~~~~~~~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 184 (751)
...+++.+.|...+.-+.++.|.+..+|..++.++-..|+...+...---+.-.+ |.+
T Consensus 149 lfarg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~----------------------p~d 206 (895)
T KOG2076|consen 149 LFARGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLN----------------------PKD 206 (895)
T ss_pred HHHhCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcC----------------------CCC
Confidence 3467999999999999999999999999999999999998887755333322222 677
Q ss_pred hhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCccCHHhHHHHHHHHHhCCCCHHHHHHHHHhchhcCCCcCHHHHH----
Q 004470 185 PHVFDIFFQVLVEARKLNEARKLFEKLLNYGLVISVDSCNLFLSRLSNTCDGLRMVVKSFTEFPELGICWNTASYN---- 260 (751)
Q Consensus 185 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~---- 260 (751)
...|..++....++|.+++|.-+|.++++. .|+..-+..=-+.++++.|+...|..-|.++....++.|-.-..
T Consensus 207 ~e~W~~ladls~~~~~i~qA~~cy~rAI~~--~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~ 284 (895)
T KOG2076|consen 207 YELWKRLADLSEQLGNINQARYCYSRAIQA--NPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIR 284 (895)
T ss_pred hHHHHHHHHHHHhcccHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHH
Confidence 788999999999999999999999999998 67776555555677778899999999999999886532322222
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhc-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC--------------
Q 004470 261 IMIHCLCRFGKIKEAHLLLLQMELR-GCSPDVVSFSTIINGYCYLGELQRVLKLIEEMQIKGLKPN-------------- 325 (751)
Q Consensus 261 ~li~~~~~~g~~~~A~~~~~~m~~~-g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-------------- 325 (751)
.++..+...++-+.|++.++..... +-..+...++.++..+.+...++.|......+......+|
T Consensus 285 ~~~~~~~~~~~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~ 364 (895)
T KOG2076|consen 285 RVAHYFITHNERERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEP 364 (895)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccc
Confidence 3456677788889999999887652 2224556788899999999999999988888776211111
Q ss_pred --------cccHH----HHHHHHHhcCCHHHHHHHHHHHHHCC--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC
Q 004470 326 --------PYTYN----SVVRLLCKTSKVVEAETILREMMNQG--IVPDNVIYTTLIDGFCKMGNVAAAYRLFDEMRGLN 391 (751)
Q Consensus 326 --------~~~~~----~li~~~~~~g~~~~A~~~~~~m~~~g--~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 391 (751)
...|. -+.-++......+....+...+.... +.-++..|.-+.++|...|++.+|+.+|..+....
T Consensus 365 ~~~~~~~~~~s~~l~v~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~ 444 (895)
T KOG2076|consen 365 NALCEVGKELSYDLRVIRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNRE 444 (895)
T ss_pred cccccCCCCCCccchhHhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCc
Confidence 11111 12223333344444444444444444 34456678888899999999999999999988776
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHh--------CCCC
Q 004470 392 IIPDLLTYTAIICGFCLTGKMVEAEKLFHEMLGRGLEPDEIVYTALIDGYCKAGGMKKAFSLHNNMVH--------MRLT 463 (751)
Q Consensus 392 ~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--------~~~~ 463 (751)
..-+...|-.+..+|...|.+++|.+.|+..+... +.+...-..|...+.+.|+.++|.+.+..+.. .+..
T Consensus 445 ~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~-p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~ 523 (895)
T KOG2076|consen 445 GYQNAFVWYKLARCYMELGEYEEAIEFYEKVLILA-PDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWE 523 (895)
T ss_pred cccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhcccc
Confidence 66677888899999999999999999999988762 33445556677788889999999998888542 1223
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-----------------------------------------------
Q 004470 464 PNVVTYTALADGLCKSGELETANELLHEMCRKG----------------------------------------------- 496 (751)
Q Consensus 464 ~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g----------------------------------------------- 496 (751)
|+........+.+.+.|+.++=+.+...|+...
T Consensus 524 ~e~ri~~~r~d~l~~~gk~E~fi~t~~~Lv~~~~~~~~~f~~~~k~r~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~ 603 (895)
T KOG2076|consen 524 PERRILAHRCDILFQVGKREEFINTASTLVDDFLKKRYIFPRNKKKRRRAIAGTTSKRYSELLKQIIRAREKATDDNVME 603 (895)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHhhccccccccchhHHHHHHHHhccCchHHhh
Confidence 334344444555666666554333332222110
Q ss_pred ----------------CCCCH--HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC-CCHH----HHHHHHHHHHHcCCHH
Q 004470 497 ----------------LQLNI--YTYNSIVNGLCKAGNILQAVKLMEDMEVAGFH-PDTF----TYTTIMDAYCKSGEMV 553 (751)
Q Consensus 497 ----------------~~~~~--~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~----~~~~li~~~~~~g~~~ 553 (751)
...+. ..+.-++.++++.+++++|+.+...+.+.... -+.. .-...+.+.+..+++.
T Consensus 604 ~~l~d~~~~~~~e~~~Lsiddwfel~~e~i~~L~k~~r~qeAl~vv~~a~~~~~f~~~~~~~k~l~~~~l~~s~~~~d~~ 683 (895)
T KOG2076|consen 604 KALSDGTEFRAVELRGLSIDDWFELFRELILSLAKLQRVQEALSVVFTALEAYIFFQDSEIRKELQFLGLKASLYARDPG 683 (895)
T ss_pred hcccchhhhhhhhhccCcHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHHHhcCCHH
Confidence 00000 12245667888999999999999988764321 1222 2234456677899999
Q ss_pred HHHHHHHHHHhC-CC---CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHHcCCHHHHHHHH
Q 004470 554 KAHELLRDMLDK-GL---QPSVVTFNVLMNGFCMSGMIEDGEKLLKWMLEKGLKPNAATYNPLIKQHCLRNDMRTTAKIY 629 (751)
Q Consensus 554 ~A~~~~~~~~~~-~~---~p~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 629 (751)
.|...++.|+.. +. +--...|+...+.+.+.|+-.--..++..+......-+...+..-.+.+...+.+..|+..+
T Consensus 684 ~a~~~lR~~i~~~~~~~~~~q~~l~n~~~s~~~~~~q~v~~~R~~~~~~~~~~~~~~~l~~i~gh~~~~~~s~~~Al~~y 763 (895)
T KOG2076|consen 684 DAFSYLRSVITQFQFYLDVYQLNLWNLDFSYFSKYGQRVCYLRLIMRLLVKNKDDTPPLALIYGHNLFVNASFKHALQEY 763 (895)
T ss_pred HHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccCCcceeeeechhHhhccchHHHHHHH
Confidence 999999999864 11 11234566566666666654444455544443322222333333344456788899999988
Q ss_pred HHHHHCCCCCCHHHHHH-HHHHHH----------hcCCHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHhcCCHHHHHH
Q 004470 630 KGMCAQGITPDGNTYNI-LLQGHC----------KARNMKEAWFLHKEMVQKG-FNLTTSSYNALIKGFLKRKKYLEARE 697 (751)
Q Consensus 630 ~~m~~~g~~p~~~~~~~-li~~~~----------~~g~~~~A~~~~~~~~~~~-~~p~~~~~~~l~~~~~~~g~~~~A~~ 697 (751)
-+.... .||...++. +..++. ++-..-.++.++.+..+.. ..-...++-.++.+|-..|-..-|..
T Consensus 764 ~ra~~~--~pd~Pl~nl~lglafih~a~qr~v~~Rh~~i~qG~afL~RY~~lR~~~~~QEa~YNigRayh~~gl~~LA~~ 841 (895)
T KOG2076|consen 764 MRAFRQ--NPDSPLINLCLGLAFIHLALQRRVSNRHAQIAQGFAFLKRYKELRRCEEKQEAFYNIGRAYHQIGLVHLAVS 841 (895)
T ss_pred HHHHHh--CCCCcHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHcccHHHHHH
Confidence 887774 455333322 222221 1112445666666655532 11235577789999999999999999
Q ss_pred HHHHHHHCCCC-------CC----HHHHHHHHHHHHhcCChhHHHHHHHH
Q 004470 698 LFEEMRRGGLV-------AD----REIYYFFVDINFEEGNTEITLELCDA 736 (751)
Q Consensus 698 ~~~~~~~~~~~-------~~----~~~~~~l~~~~~~~g~~~~A~~~~~~ 736 (751)
+|++.+..... ++ ...-+.|.-.|..+|+.+.|.+++++
T Consensus 842 YYekvL~~~p~~~~~~~~d~~dLrkeAA~NL~LIY~~SGn~~lArqil~k 891 (895)
T KOG2076|consen 842 YYEKVLEVSPKDVTDPKEDNYDLRKEAAYNLHLIYKKSGNMQLARQILEK 891 (895)
T ss_pred HHHHHhCCCccccccccCCcccHHHHHHhhhhhhhccCCcHHHHHHHHHh
Confidence 99999975210 01 12333455689999999999998765
No 28
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.86 E-value=1.8e-16 Score=177.60 Aligned_cols=442 Identities=12% Similarity=0.049 Sum_probs=300.0
Q ss_pred CCCChhHHHHHHHHHHhcCChHHHHHHHHHHHcCCCCCchhhhHHHHHHHHHhhhcCCCCh-hhHHHHHHHHHhcCChhH
Q 004470 125 REPILEARCIVVQISVAAKDLKTAHGLIHDFWAKPNLDASIAFTHFVERLIYTYKDWGSDP-HVFDIFFQVLVEARKLNE 203 (751)
Q Consensus 125 ~~~~~~~~~~~~~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~ 203 (751)
.|.++.+....+.+..+.|+++.|...|.++++.. |.++ .++ .++..+...|+.++
T Consensus 30 ~p~~~~~~y~~aii~~r~Gd~~~Al~~L~qaL~~~----------------------P~~~~av~-dll~l~~~~G~~~~ 86 (822)
T PRK14574 30 NPAMADTQYDSLIIRARAGDTAPVLDYLQEESKAG----------------------PLQSGQVD-DWLQIAGWAGRDQE 86 (822)
T ss_pred CccchhHHHHHHHHHHhCCCHHHHHHHHHHHHhhC----------------------ccchhhHH-HHHHHHHHcCCcHH
Confidence 45566677777778888888888888888888765 4442 344 67777788888888
Q ss_pred HHHHHHHHHhCCCccCHHhHHHHH--HHHHhCCCCHHHHHHHHHhchhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 004470 204 ARKLFEKLLNYGLVISVDSCNLFL--SRLSNTCDGLRMVVKSFTEFPELGICWNTASYNIMIHCLCRFGKIKEAHLLLLQ 281 (751)
Q Consensus 204 A~~~~~~~~~~g~~p~~~~~~~ll--~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 281 (751)
|+..+++.. .|+...+..++ +.++...|++++|+++|+++.+..+. |...+..++..+...++.++|++.+++
T Consensus 87 A~~~~eka~----~p~n~~~~~llalA~ly~~~gdyd~Aiely~kaL~~dP~-n~~~l~gLa~~y~~~~q~~eAl~~l~~ 161 (822)
T PRK14574 87 VIDVYERYQ----SSMNISSRGLASAARAYRNEKRWDQALALWQSSLKKDPT-NPDLISGMIMTQADAGRGGVVLKQATE 161 (822)
T ss_pred HHHHHHHhc----cCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHH
Confidence 888888887 34444444444 55666778888899999888888766 577777788888888999999988888
Q ss_pred HHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH
Q 004470 282 MELRGCSPDVVSFSTIINGYCYLGELQRVLKLIEEMQIKGLKPNPYTYNSVVRLLCKTSKVVEAETILREMMNQGIVPDN 361 (751)
Q Consensus 282 m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 361 (751)
+.... |+...+..++..+...++..+|++.++++.+.. +-+...+..+...+.+.|-...|.++..+-... +.+..
T Consensus 162 l~~~d--p~~~~~l~layL~~~~~~~~~AL~~~ekll~~~-P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~-f~~~~ 237 (822)
T PRK14574 162 LAERD--PTVQNYMTLSYLNRATDRNYDALQASSEAVRLA-PTSEEVLKNHLEILQRNRIVEPALRLAKENPNL-VSAEH 237 (822)
T ss_pred hcccC--cchHHHHHHHHHHHhcchHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccc-cCHHH
Confidence 87653 555555444444444666666888888888874 335667778888888888888877666543221 11111
Q ss_pred HHH------HHHHHHH-----HHcCC---HHHHHHHHHHHHhC-CCCCCH-HHH----HHHHHHHHhcCCHHHHHHHHHH
Q 004470 362 VIY------TTLIDGF-----CKMGN---VAAAYRLFDEMRGL-NIIPDL-LTY----TAIICGFCLTGKMVEAEKLFHE 421 (751)
Q Consensus 362 ~~~------~~li~~~-----~~~g~---~~~A~~~~~~m~~~-~~~p~~-~~~----~~li~~~~~~g~~~~A~~~~~~ 421 (751)
..+ ..++..- ....+ .+.|+.-++.+... +..|.. ..| .-.+-++...|++.++++.|+.
T Consensus 238 ~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~ 317 (822)
T PRK14574 238 YRQLERDAAAEQVRMAVLPTRSETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEA 317 (822)
T ss_pred HHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 100 1111100 01122 34455555555442 122321 122 2334567788888999999988
Q ss_pred HHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCC-----CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 004470 422 MLGRGLEPDEIVYTALIDGYCKAGGMKKAFSLHNNMVHMRL-----TPNVVTYTALADGLCKSGELETANELLHEMCRKG 496 (751)
Q Consensus 422 m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-----~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g 496 (751)
+...+.+....+-..+.++|...++.++|..++..+..... .++......|..++...+++++|..+++.+.+..
T Consensus 318 l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~ 397 (822)
T PRK14574 318 MEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQT 397 (822)
T ss_pred hhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcC
Confidence 88877665566777888888888899999999888865431 2244445678888888888888888888888742
Q ss_pred C-----------CCC--HH-HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 004470 497 L-----------QLN--IY-TYNSIVNGLCKAGNILQAVKLMEDMEVAGFHPDTFTYTTIMDAYCKSGEMVKAHELLRDM 562 (751)
Q Consensus 497 ~-----------~~~--~~-~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 562 (751)
+ .|| -. .+..++..+...|++.+|++.++++.... |-|......+.+.+...|.+.+|++.++..
T Consensus 398 p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~a-P~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a 476 (822)
T PRK14574 398 PYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTA-PANQNLRIALASIYLARDLPRKAEQELKAV 476 (822)
T ss_pred CcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 1 122 12 23445666777888888888888887665 667777778888888888888888888666
Q ss_pred HhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 004470 563 LDKGLQPSVVTFNVLMNGFCMSGMIEDGEKLLKWMLEK 600 (751)
Q Consensus 563 ~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~ 600 (751)
.... +.+..+....+..+...|++++|..+.+.+.+.
T Consensus 477 ~~l~-P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~~ 513 (822)
T PRK14574 477 ESLA-PRSLILERAQAETAMALQEWHQMELLTDDVISR 513 (822)
T ss_pred hhhC-CccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhh
Confidence 6542 445666667777777778888888888777765
No 29
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.85 E-value=3.5e-16 Score=175.30 Aligned_cols=430 Identities=13% Similarity=0.083 Sum_probs=299.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CcccHHHH--H
Q 004470 259 YNIMIHCLCRFGKIKEAHLLLLQMELRGCSPDV--VSFSTIINGYCYLGELQRVLKLIEEMQIKGLKP-NPYTYNSV--V 333 (751)
Q Consensus 259 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~l--i 333 (751)
|...| ...+.|+++.|++.|++..+.. |+. ..+ .++..+...|+.++|+..+++.. .| +...+..+ .
T Consensus 38 y~~ai-i~~r~Gd~~~Al~~L~qaL~~~--P~~~~av~-dll~l~~~~G~~~~A~~~~eka~----~p~n~~~~~llalA 109 (822)
T PRK14574 38 YDSLI-IRARAGDTAPVLDYLQEESKAG--PLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQ----SSMNISSRGLASAA 109 (822)
T ss_pred HHHHH-HHHhCCCHHHHHHHHHHHHhhC--ccchhhHH-HHHHHHHHcCCcHHHHHHHHHhc----cCCCCCHHHHHHHH
Confidence 44333 5679999999999999998764 443 234 88888889999999999999988 23 33333444 5
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHH
Q 004470 334 RLLCKTSKVVEAETILREMMNQGIVPDNVIYTTLIDGFCKMGNVAAAYRLFDEMRGLNIIPDLLTYTAIICGFCLTGKMV 413 (751)
Q Consensus 334 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~ 413 (751)
..+...|++++|.++++++.+.. +-+...+..++..|...++.++|++.++++.... |+...+..++..+...++..
T Consensus 110 ~ly~~~gdyd~Aiely~kaL~~d-P~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~d--p~~~~~l~layL~~~~~~~~ 186 (822)
T PRK14574 110 RAYRNEKRWDQALALWQSSLKKD-PTNPDLISGMIMTQADAGRGGVVLKQATELAERD--PTVQNYMTLSYLNRATDRNY 186 (822)
T ss_pred HHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccC--cchHHHHHHHHHHHhcchHH
Confidence 68888899999999999999984 3356777788899999999999999999998864 55555655555555567777
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHH----HHHHHhcC---------
Q 004470 414 EAEKLFHEMLGRGLEPDEIVYTALIDGYCKAGGMKKAFSLHNNMVHMRLTPNVVTYTAL----ADGLCKSG--------- 480 (751)
Q Consensus 414 ~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l----i~~~~~~g--------- 480 (751)
+|++.++++.+.. +.+...+..+.....+.|-...|.++..+-... + +...+..| +.-..+.+
T Consensus 187 ~AL~~~ekll~~~-P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~-f--~~~~~~~l~~~~~a~~vr~a~~~~~~~~~ 262 (822)
T PRK14574 187 DALQASSEAVRLA-PTSEEVLKNHLEILQRNRIVEPALRLAKENPNL-V--SAEHYRQLERDAAAEQVRMAVLPTRSETE 262 (822)
T ss_pred HHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccc-c--CHHHHHHHHHHHHHHHHhhcccccccchh
Confidence 7999999999873 446778888889999999999999877664321 1 11111111 11111111
Q ss_pred ---CHHHHHHHHHHHHHc-CCCCC-HHH----HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC
Q 004470 481 ---ELETANELLHEMCRK-GLQLN-IYT----YNSIVNGLCKAGNILQAVKLMEDMEVAGFHPDTFTYTTIMDAYCKSGE 551 (751)
Q Consensus 481 ---~~~~A~~l~~~m~~~-g~~~~-~~~----~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 551 (751)
-.+.|+.-++.+... +..|. ... ..-.+-++...|+..++++.++.+...+.+....+-..+.++|...++
T Consensus 263 r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~ 342 (822)
T PRK14574 263 RFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRL 342 (822)
T ss_pred hHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCC
Confidence 134455555555542 11122 111 123344667788888888888888877755556677788888888888
Q ss_pred HHHHHHHHHHHHhCC-----CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCC-------------CCCHh-hHHHH
Q 004470 552 MVKAHELLRDMLDKG-----LQPSVVTFNVLMNGFCMSGMIEDGEKLLKWMLEKGL-------------KPNAA-TYNPL 612 (751)
Q Consensus 552 ~~~A~~~~~~~~~~~-----~~p~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~g~-------------~p~~~-~~~~l 612 (751)
+++|..+++.+.... .+++......|..+|...+++++|..+++.+.+... .||-. .+..+
T Consensus 343 P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~ 422 (822)
T PRK14574 343 PEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLL 422 (822)
T ss_pred cHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHH
Confidence 888888888886542 123444456788888888888888888888876311 12222 23344
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 004470 613 IKQHCLRNDMRTTAKIYKGMCAQGITPDGNTYNILLQGHCKARNMKEAWFLHKEMVQKGFNLTTSSYNALIKGFLKRKKY 692 (751)
Q Consensus 613 ~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~ 692 (751)
+..+...|++.+|++.++++.... +-|......+.+.+...|.+.+|.+.++.+....+. +..+....+.++...|++
T Consensus 423 a~~~~~~gdl~~Ae~~le~l~~~a-P~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~-~~~~~~~~~~~al~l~e~ 500 (822)
T PRK14574 423 VQSLVALNDLPTAQKKLEDLSSTA-PANQNLRIALASIYLARDLPRKAEQELKAVESLAPR-SLILERAQAETAMALQEW 500 (822)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCc-cHHHHHHHHHHHHhhhhH
Confidence 556677788888888888877653 346777777778888888888888888766665433 566666777777777888
Q ss_pred HHHHHHHHHHHHC
Q 004470 693 LEARELFEEMRRG 705 (751)
Q Consensus 693 ~~A~~~~~~~~~~ 705 (751)
++|..+.+...+.
T Consensus 501 ~~A~~~~~~l~~~ 513 (822)
T PRK14574 501 HQMELLTDDVISR 513 (822)
T ss_pred HHHHHHHHHHHhh
Confidence 8888888777764
No 30
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.80 E-value=8.8e-15 Score=142.25 Aligned_cols=323 Identities=16% Similarity=0.286 Sum_probs=224.2
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhCCCccCHHhHHHHHHHHH--hCCCCHHHHHHHHHhchhcCCCcCHHHHHHHHHH
Q 004470 188 FDIFFQVLVEARKLNEARKLFEKLLNYGLVISVDSCNLFLSRLS--NTCDGLRMVVKSFTEFPELGICWNTASYNIMIHC 265 (751)
Q Consensus 188 ~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~l~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 265 (751)
-+.|++. ..+|.+.++.-+|+.|...|...+...-..++.-.. ..++-.-.-++.|-.|...|-. +..+|
T Consensus 119 E~nL~km-IS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~-S~~sW------ 190 (625)
T KOG4422|consen 119 ENNLLKM-ISSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGED-STSSW------ 190 (625)
T ss_pred hhHHHHH-HhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccccc-ccccc------
Confidence 3444443 567999999999999999987776655444443332 1112121223334444433322 22222
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCHHHH
Q 004470 266 LCRFGKIKEAHLLLLQMELRGCSPDVVSFSTIINGYCYLGELQRVLKLIEEMQIKGLKPNPYTYNSVVRLLCKTSKVVEA 345 (751)
Q Consensus 266 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A 345 (751)
|.|.+.+ ++-+..- .+..+|.++|.++|+--..+.|.+++.+......+.+..+||.+|.+-.- ...
T Consensus 191 --K~G~vAd---L~~E~~P----KT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~----~~~ 257 (625)
T KOG4422|consen 191 --KSGAVAD---LLFETLP----KTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSY----SVG 257 (625)
T ss_pred --ccccHHH---HHHhhcC----CCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHh----hcc
Confidence 5565544 3333322 35678999999999999999999999998887778888899988876443 233
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHH----HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHH-HHHHHH
Q 004470 346 ETILREMMNQGIVPDNVIYTTLIDGFCKMGNVAA----AYRLFDEMRGLNIIPDLLTYTAIICGFCLTGKMVE-AEKLFH 420 (751)
Q Consensus 346 ~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~----A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~-A~~~~~ 420 (751)
.+++.+|....+.||..|+|+++.+..+.|+++. |.+++.+|++.|+.|...+|..+|..+++.++..+ |..++.
T Consensus 258 K~Lv~EMisqkm~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~ 337 (625)
T KOG4422|consen 258 KKLVAEMISQKMTPNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWIN 337 (625)
T ss_pred HHHHHHHHHhhcCCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHH
Confidence 7788999998899999999999999999998765 45678889999999999999999999998887744 444554
Q ss_pred HHHH----CCCCC----CHHHHHHHHHHHHHcCChhHHHHHHHHHHhCC----CCCC---HHHHHHHHHHHHhcCCHHHH
Q 004470 421 EMLG----RGLEP----DEIVYTALIDGYCKAGGMKKAFSLHNNMVHMR----LTPN---VVTYTALADGLCKSGELETA 485 (751)
Q Consensus 421 ~m~~----~~~~p----~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~----~~~~---~~~~~~li~~~~~~g~~~~A 485 (751)
++.. +.++| |...|...+..|.+..+.+-|.++..-..... +.|+ ...|..+....|+....+..
T Consensus 338 dI~N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~ 417 (625)
T KOG4422|consen 338 DIQNSLTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVT 417 (625)
T ss_pred HHHHhhccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4443 22332 45667777888888888888888766554321 2222 23455667777777778888
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC
Q 004470 486 NELLHEMCRKGLQLNIYTYNSIVNGLCKAGNILQAVKLMEDMEVAG 531 (751)
Q Consensus 486 ~~l~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 531 (751)
...|+.|+-.-.-|+..+...++.+....|.++-.-++|.++...|
T Consensus 418 ~~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~g 463 (625)
T KOG4422|consen 418 LKWYEDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYG 463 (625)
T ss_pred HHHHHHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhh
Confidence 8888888777677777777777777777778877777777777665
No 31
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.79 E-value=3.5e-12 Score=130.78 Aligned_cols=573 Identities=11% Similarity=0.041 Sum_probs=438.5
Q ss_pred HHHhhcCChHHHHHHHHhhhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHcCCCCCchhhh--HHHH-------HH
Q 004470 103 VLMDIRSDYRLVLDFFDWACLRREPILEARCIVVQISVAAKDLKTAHGLIHDFWAKPNLDASIAF--THFV-------ER 173 (751)
Q Consensus 103 ~l~~~~~~~~~al~~f~~~~~~~~~~~~~~~~~~~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~--~~~~-------~~ 173 (751)
.|...-++...|..+..--....|.+-+...-.++ ....+.|..++..+++.....+..=+ .++- ..
T Consensus 293 rLEEvagKl~~Ar~~I~~GCe~cprSeDvWLeaiR----Lhp~d~aK~vvA~Avr~~P~Sv~lW~kA~dLE~~~~~K~RV 368 (913)
T KOG0495|consen 293 RLEEVAGKLSVARNLIMKGCEECPRSEDVWLEAIR----LHPPDVAKTVVANAVRFLPTSVRLWLKAADLESDTKNKKRV 368 (913)
T ss_pred HHHHHhhHHHHHHHHHHHHHhhCCchHHHHHHHHh----cCChHHHHHHHHHHHHhCCCChhhhhhHHhhhhHHHHHHHH
Confidence 44444445556666555544455555554443332 34567788888888776422111000 0000 01
Q ss_pred HHHhhhcCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCccCHHhHHHHHHHHHhCCCCHHHHHHHHHhchhcCCC
Q 004470 174 LIYTYKDWGSDPHVFDIFFQVLVEARKLNEARKLFEKLLNYGLVISVDSCNLFLSRLSNTCDGLRMVVKSFTEFPELGIC 253 (751)
Q Consensus 174 l~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~l~~~~~~~~~a~~~~~~~~~~~~~ 253 (751)
+-......|.+...|- +-+.....++|..++.++.+. -|.....-..+..+ ..++.|.++++++.+. ++
T Consensus 369 lRKALe~iP~sv~LWK----aAVelE~~~darilL~rAvec--cp~s~dLwlAlarL----etYenAkkvLNkaRe~-ip 437 (913)
T KOG0495|consen 369 LRKALEHIPRSVRLWK----AAVELEEPEDARILLERAVEC--CPQSMDLWLALARL----ETYENAKKVLNKAREI-IP 437 (913)
T ss_pred HHHHHHhCCchHHHHH----HHHhccChHHHHHHHHHHHHh--ccchHHHHHHHHHH----HHHHHHHHHHHHHHhh-CC
Confidence 1112334566666554 345667778899999999886 56655444444444 4688999999999887 44
Q ss_pred cCHHHHHHHHHHHHhcCCHHHHHHHHHHH----HhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC--cc
Q 004470 254 WNTASYNIMIHCLCRFGKIKEAHLLLLQM----ELRGCSPDVVSFSTIINGYCYLGELQRVLKLIEEMQIKGLKPN--PY 327 (751)
Q Consensus 254 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m----~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~ 327 (751)
.+...|.+-...--.+|+.+....+.++- ...|+..+...|-.=...|-..|..-.+..+.......|+.-. ..
T Consensus 438 td~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~~ 517 (913)
T KOG0495|consen 438 TDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKS 517 (913)
T ss_pred CChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhHh
Confidence 48888988888888899999998887763 4578888999998888888889999999999988888876532 46
Q ss_pred cHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 004470 328 TYNSVVRLLCKTSKVVEAETILREMMNQGIVPDNVIYTTLIDGFCKMGNVAAAYRLFDEMRGLNIIPDLLTYTAIICGFC 407 (751)
Q Consensus 328 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~ 407 (751)
||+.-...|.+.+-++-|..+|...++. .+.+...|...+..--..|..++-..+|++....-++ ....|......+-
T Consensus 518 tw~~da~~~~k~~~~~carAVya~alqv-fp~k~slWlra~~~ek~hgt~Esl~Allqkav~~~pk-ae~lwlM~ake~w 595 (913)
T KOG0495|consen 518 TWLDDAQSCEKRPAIECARAVYAHALQV-FPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQCPK-AEILWLMYAKEKW 595 (913)
T ss_pred HHhhhHHHHHhcchHHHHHHHHHHHHhh-ccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCc-chhHHHHHHHHHH
Confidence 7888889999999999999999999886 3556788888888888889999999999999876433 5667777778888
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 004470 408 LTGKMVEAEKLFHEMLGRGLEPDEIVYTALIDGYCKAGGMKKAFSLHNNMVHMRLTPNVVTYTALADGLCKSGELETANE 487 (751)
Q Consensus 408 ~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 487 (751)
..|++..|..++....+.. +-+...|-.-+..-.....++.|..+|.+.... .|+...|..-+...--.++.++|.+
T Consensus 596 ~agdv~~ar~il~~af~~~-pnseeiwlaavKle~en~e~eraR~llakar~~--sgTeRv~mKs~~~er~ld~~eeA~r 672 (913)
T KOG0495|consen 596 KAGDVPAARVILDQAFEAN-PNSEEIWLAAVKLEFENDELERARDLLAKARSI--SGTERVWMKSANLERYLDNVEEALR 672 (913)
T ss_pred hcCCcHHHHHHHHHHHHhC-CCcHHHHHHHHHHhhccccHHHHHHHHHHHhcc--CCcchhhHHHhHHHHHhhhHHHHHH
Confidence 8999999999999998874 336778888888889999999999999998875 4677777777777777899999999
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCC
Q 004470 488 LLHEMCRKGLQLNIYTYNSIVNGLCKAGNILQAVKLMEDMEVAGFHPDTFTYTTIMDAYCKSGEMVKAHELLRDMLDKGL 567 (751)
Q Consensus 488 l~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~ 567 (751)
++++..+. ++--...|..+.+.+-+.++++.|...|..-.+. ++.....|-.|...=.+.|.+-+|..++++..-.+
T Consensus 673 llEe~lk~-fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~-cP~~ipLWllLakleEk~~~~~rAR~ildrarlkN- 749 (913)
T KOG0495|consen 673 LLEEALKS-FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKK-CPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKN- 749 (913)
T ss_pred HHHHHHHh-CCchHHHHHHHhHHHHHHHHHHHHHHHHHhcccc-CCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcC-
Confidence 99999887 3323457778888899999999999988876654 35566778888888888999999999999998776
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 004470 568 QPSVVTFNVLMNGFCMSGMIEDGEKLLKWMLEKGLKPNAATYNPLIKQHCLRNDMRTTAKIYKGMCAQGITPDGNTYNIL 647 (751)
Q Consensus 568 ~p~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l 647 (751)
+.+...|-..|..-.+.|+.+.|..++.+.++. ++.+...|..-|....+.++-..+.+.+++ ...|+.....+
T Consensus 750 Pk~~~lwle~Ir~ElR~gn~~~a~~lmakALQe-cp~sg~LWaEaI~le~~~~rkTks~DALkk-----ce~dphVllai 823 (913)
T KOG0495|consen 750 PKNALLWLESIRMELRAGNKEQAELLMAKALQE-CPSSGLLWAEAIWLEPRPQRKTKSIDALKK-----CEHDPHVLLAI 823 (913)
T ss_pred CCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCccchhHHHHHHhccCcccchHHHHHHHh-----ccCCchhHHHH
Confidence 668899999999999999999999999999886 444566777777766666665555444443 34577888888
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 004470 648 LQGHCKARNMKEAWFLHKEMVQKGFNLTTSSYNALIKGFLKRKKYLEARELFEEMRRG 705 (751)
Q Consensus 648 i~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 705 (751)
...+....++++|.+.|.+.+..++. +..+|..+...+...|.-++-.+++.+....
T Consensus 824 a~lfw~e~k~~kar~Wf~Ravk~d~d-~GD~wa~fykfel~hG~eed~kev~~~c~~~ 880 (913)
T KOG0495|consen 824 AKLFWSEKKIEKAREWFERAVKKDPD-NGDAWAWFYKFELRHGTEEDQKEVLKKCETA 880 (913)
T ss_pred HHHHHHHHHHHHHHHHHHHHHccCCc-cchHHHHHHHHHHHhCCHHHHHHHHHHHhcc
Confidence 89999999999999999999998765 6788999999999999988888898888764
No 32
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.78 E-value=2.4e-15 Score=146.87 Aligned_cols=485 Identities=11% Similarity=0.053 Sum_probs=287.9
Q ss_pred hhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCccCHHhHHHHHHHHHhCCCCHHHHHHHHHhchhcCCCcCHHH----HH
Q 004470 185 PHVFDIFFQVLVEARKLNEARKLFEKLLNYGLVISVDSCNLFLSRLSNTCDGLRMVVKSFTEFPELGICWNTAS----YN 260 (751)
Q Consensus 185 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~~----~~ 260 (751)
..++..|++-|..+.++.+|+..|+-+++....|+.-....-++.++.+...+.+|+++|+.+...-+..+-.+ .+
T Consensus 201 fsvl~nlaqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~ 280 (840)
T KOG2003|consen 201 FSVLFNLAQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILN 280 (840)
T ss_pred HHHHHHHHHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHh
Confidence 35677789999999999999999999998877888766666666666677889999999998877644444333 34
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCccc--------HHHH
Q 004470 261 IMIHCLCRFGKIKEAHLLLLQMELRGCSPDVVSFSTIINGYCYLGELQRVLKLIEEMQIKGLKPNPYT--------YNSV 332 (751)
Q Consensus 261 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~--------~~~l 332 (751)
.+.-.+.+.|++++|+.-|+...+. .||..+--.|+-.+..-|+-++..+.|.+|......||..- -..|
T Consensus 281 nigvtfiq~gqy~dainsfdh~m~~--~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~l 358 (840)
T KOG2003|consen 281 NIGVTFIQAGQYDDAINSFDHCMEE--APNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNL 358 (840)
T ss_pred hcCeeEEecccchhhHhhHHHHHHh--CccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHH
Confidence 4445678899999999999986654 37877655566666677999999999999987643444332 2223
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH----HHHHHHHHHcCCH----HHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 004470 333 VRLLCKTSKVVEAETILREMMNQGIVPDNVIY----TTLIDGFCKMGNV----AAAYRLFDEMRGLNIIPDLLTYTAIIC 404 (751)
Q Consensus 333 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~----~~li~~~~~~g~~----~~A~~~~~~m~~~~~~p~~~~~~~li~ 404 (751)
+.--.+... ++.|.+.. +.+..-+ .-+|.- .-.-++ +-.++.+..-....+..+. -. .-..
T Consensus 359 l~eai~nd~-------lk~~ek~~-ka~aek~i~ta~kiiap-vi~~~fa~g~dwcle~lk~s~~~~la~dl-ei-~ka~ 427 (840)
T KOG2003|consen 359 LNEAIKNDH-------LKNMEKEN-KADAEKAIITAAKIIAP-VIAPDFAAGCDWCLESLKASQHAELAIDL-EI-NKAG 427 (840)
T ss_pred HHHHHhhHH-------HHHHHHhh-hhhHHHHHHHHHHHhcc-ccccchhcccHHHHHHHHHhhhhhhhhhh-hh-hHHH
Confidence 222222111 11221111 0000000 000000 000000 1111111111000000000 00 1123
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH--cCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH
Q 004470 405 GFCLTGKMVEAEKLFHEMLGRGLEPDEIVYTALIDGYCK--AGGMKKAFSLHNNMVHMRLTPNVVTYTALADGLCKSGEL 482 (751)
Q Consensus 405 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~--~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 482 (751)
.+.++|+++.|+++++-..+..-+.-...-+.|-..+.- ..++..|.++-+..+... .-+......-.+.....|++
T Consensus 428 ~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~d-ryn~~a~~nkgn~~f~ngd~ 506 (840)
T KOG2003|consen 428 ELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNID-RYNAAALTNKGNIAFANGDL 506 (840)
T ss_pred HHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhccc-ccCHHHhhcCCceeeecCcH
Confidence 466788888888888777665433333333333333322 235666766666655332 11333333333444556788
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 004470 483 ETANELLHEMCRKGLQLNIYTYNSIVNGLCKAGNILQAVKLMEDMEVAGFHPDTFTYTTIMDAYCKSGEMVKAHELLRDM 562 (751)
Q Consensus 483 ~~A~~l~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 562 (751)
++|.+.+++.....-. -...+..+.-.+-..|++++|++.|-++... +..++.+...+...|....+..+|++++.+.
T Consensus 507 dka~~~ykeal~ndas-c~ealfniglt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie~~~q~ 584 (840)
T KOG2003|consen 507 DKAAEFYKEALNNDAS-CTEALFNIGLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIELLMQA 584 (840)
T ss_pred HHHHHHHHHHHcCchH-HHHHHHHhcccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHHHHHHh
Confidence 8888888887765221 1112222233456677888888877766442 1345666667777777777777888777776
Q ss_pred HhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH
Q 004470 563 LDKGLQPSVVTFNVLMNGFCMSGMIEDGEKLLKWMLEKGLKPNAATYNPLIKQHCLRNDMRTTAKIYKGMCAQGITPDGN 642 (751)
Q Consensus 563 ~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 642 (751)
... ++.|+....-|.+.|-+.|+-..|.+.+-+--.- ++-+..+...|...|....-+++|+.+|++..- +.|+..
T Consensus 585 ~sl-ip~dp~ilskl~dlydqegdksqafq~~ydsyry-fp~nie~iewl~ayyidtqf~ekai~y~ekaal--iqp~~~ 660 (840)
T KOG2003|consen 585 NSL-IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRY-FPCNIETIEWLAAYYIDTQFSEKAINYFEKAAL--IQPNQS 660 (840)
T ss_pred ccc-CCCCHHHHHHHHHHhhcccchhhhhhhhhhcccc-cCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHh--cCccHH
Confidence 554 5667777777777777777777777765444332 344666666777767777777777777776654 567777
Q ss_pred HHHHHHHHH-HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 004470 643 TYNILLQGH-CKARNMKEAWFLHKEMVQKGFNLTTSSYNALIKGFLKRK 690 (751)
Q Consensus 643 ~~~~li~~~-~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 690 (751)
-|..++..| .+.|++++|.++|+....+- +-|...+.-|++.+...|
T Consensus 661 kwqlmiasc~rrsgnyqka~d~yk~~hrkf-pedldclkflvri~~dlg 708 (840)
T KOG2003|consen 661 KWQLMIASCFRRSGNYQKAFDLYKDIHRKF-PEDLDCLKFLVRIAGDLG 708 (840)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHHhC-ccchHHHHHHHHHhcccc
Confidence 776665443 46677777777777776653 336666666666665554
No 33
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.75 E-value=2.1e-13 Score=132.84 Aligned_cols=445 Identities=15% Similarity=0.152 Sum_probs=298.1
Q ss_pred hHHHHHHHHHhCCCCHHHHHHHHHhchhcCCCcCHHHHHHHHHHHHh--cCCHHH-HHHHHHHHHhcCCCCCHHHHHHHH
Q 004470 222 SCNLFLSRLSNTCDGLRMVVKSFTEFPELGICWNTASYNIMIHCLCR--FGKIKE-AHLLLLQMELRGCSPDVVSFSTII 298 (751)
Q Consensus 222 ~~~~ll~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~--~g~~~~-A~~~~~~m~~~g~~p~~~~~~~li 298 (751)
+=|.++..+. +|.+..+.-+|+.|...|++.+...-..|.+.-|- ..++-= -++.|-.|...|- .+..+|
T Consensus 118 ~E~nL~kmIS--~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E-~S~~sW---- 190 (625)
T KOG4422|consen 118 TENNLLKMIS--SREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGE-DSTSSW---- 190 (625)
T ss_pred chhHHHHHHh--hcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhcccccc-cccccc----
Confidence 4466666664 68899999999999998887777766666554332 223222 2344555555443 233344
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHH
Q 004470 299 NGYCYLGELQRVLKLIEEMQIKGLKPNPYTYNSVVRLLCKTSKVVEAETILREMMNQGIVPDNVIYTTLIDGFCKMGNVA 378 (751)
Q Consensus 299 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~ 378 (751)
+.|.+.+ ++-+. .+-+..||..+|.++|+--..+.|.+++++-.....+.+..+||.+|.+-.-.
T Consensus 191 ----K~G~vAd---L~~E~----~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~---- 255 (625)
T KOG4422|consen 191 ----KSGAVAD---LLFET----LPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYS---- 255 (625)
T ss_pred ----ccccHHH---HHHhh----cCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhh----
Confidence 4455443 33332 24478899999999999999999999999988877788999999998764322
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHH----HHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhH-HHHH
Q 004470 379 AAYRLFDEMRGLNIIPDLLTYTAIICGFCLTGKMVE----AEKLFHEMLGRGLEPDEIVYTALIDGYCKAGGMKK-AFSL 453 (751)
Q Consensus 379 ~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~----A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~-A~~~ 453 (751)
...+++.+|....+.||..|+|+++.+..+.|+++. |.+++.+|.+.|+.|...+|..+|..+++.++..+ |..+
T Consensus 256 ~~K~Lv~EMisqkm~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~ 335 (625)
T KOG4422|consen 256 VGKKLVAEMISQKMTPNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSW 335 (625)
T ss_pred ccHHHHHHHHHhhcCCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHH
Confidence 227889999999999999999999999999998765 46777888899999999999999999988887643 5555
Q ss_pred HHHHHh----CCCC---C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC----CCCC---HHHHHHHHHHHHHcCCHH
Q 004470 454 HNNMVH----MRLT---P-NVVTYTALADGLCKSGELETANELLHEMCRKG----LQLN---IYTYNSIVNGLCKAGNIL 518 (751)
Q Consensus 454 ~~~~~~----~~~~---~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g----~~~~---~~~~~~li~~~~~~g~~~ 518 (751)
..++.. +.++ | +...|..-+..|.+..+.+-|.++..-+.... +.|+ ..-|..+....|.....+
T Consensus 336 i~dI~N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~ 415 (625)
T KOG4422|consen 336 INDIQNSLTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESID 415 (625)
T ss_pred HHHHHHhhccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHH
Confidence 555443 2222 2 34456667777778888888887776554321 2222 234566777788888888
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 004470 519 QAVKLMEDMEVAGFHPDTFTYTTIMDAYCKSGEMVKAHELLRDMLDKGLQPSVVTFNVLMNGFCMSGMIEDGEKLLKWML 598 (751)
Q Consensus 519 ~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~~~ 598 (751)
.....++.|.-.-+-|+..+...++++..-.|.++-.-+++.+++..|.+-+......+. ..+.
T Consensus 416 ~~~~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil----------------~~L~ 479 (625)
T KOG4422|consen 416 VTLKWYEDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEIL----------------MLLA 479 (625)
T ss_pred HHHHHHHHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHH----------------HHHh
Confidence 889999988877677888888888888888888888888888888776443333322222 2333
Q ss_pred HcCCCCCHh---hHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC---
Q 004470 599 EKGLKPNAA---TYNPLIKQHCLRNDMRTTAKIYKGMCAQGITPDGNTYNILLQGHCKARNMKEAWFLHKEMVQKGF--- 672 (751)
Q Consensus 599 ~~g~~p~~~---~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~--- 672 (751)
...+.|+.. -+.....-+ ...-.+.....-.+|.+... .....+..+-.+.+.|+.++|.+++....+++-
T Consensus 480 ~~k~hp~tp~r~Ql~~~~ak~-aad~~e~~e~~~~R~r~~~~--~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip 556 (625)
T KOG4422|consen 480 RDKLHPLTPEREQLQVAFAKC-AADIKEAYESQPIRQRAQDW--PATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIP 556 (625)
T ss_pred cCCCCCCChHHHHHHHHHHHH-HHHHHHHHHhhHHHHHhccC--ChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCC
Confidence 322333322 111111111 11111222222334444444 345556667778899999999999999876542
Q ss_pred -CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 004470 673 -NLTTSSYNALIKGFLKRKKYLEARELFEEMRRGGL 707 (751)
Q Consensus 673 -~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 707 (751)
.|.......+++.-...+....|...++-|...+.
T Consensus 557 ~~p~lnAm~El~d~a~~~~spsqA~~~lQ~a~~~n~ 592 (625)
T KOG4422|consen 557 RSPLLNAMAELMDSAKVSNSPSQAIEVLQLASAFNL 592 (625)
T ss_pred CCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCc
Confidence 23333444666677778889999999999877653
No 34
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.75 E-value=4.3e-15 Score=145.08 Aligned_cols=465 Identities=12% Similarity=0.039 Sum_probs=276.3
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHH-HHHHHHHhcCCHHHHHHHHHHHHHCCCCCC----cccHHHHHHH
Q 004470 261 IMIHCLCRFGKIKEAHLLLLQMELRGCSPDVVSFS-TIINGYCYLGELQRVLKLIEEMQIKGLKPN----PYTYNSVVRL 335 (751)
Q Consensus 261 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~-~li~~~~~~g~~~~A~~~~~~m~~~g~~p~----~~~~~~li~~ 335 (751)
.|..-|.......+|+..|+-+.+...-||..... .+.+.+.+..++.+|+++++.....-...+ ....+.+.-.
T Consensus 206 nlaqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~nigvt 285 (840)
T KOG2003|consen 206 NLAQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNNIGVT 285 (840)
T ss_pred HHHHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhhcCee
Confidence 34455556666777888887777766666654332 244567777788888888877665511111 2234444455
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCC------------CCHHHHHHHH
Q 004470 336 LCKTSKVVEAETILREMMNQGIVPDNVIYTTLIDGFCKMGNVAAAYRLFDEMRGLNII------------PDLLTYTAII 403 (751)
Q Consensus 336 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~------------p~~~~~~~li 403 (751)
+.+.|.++.|+.-|+...+. .|+..+-..|+-++.--|+-++..+.|.+|...-.. |+....+.-|
T Consensus 286 fiq~gqy~dainsfdh~m~~--~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~eai 363 (840)
T KOG2003|consen 286 FIQAGQYDDAINSFDHCMEE--APNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNEAI 363 (840)
T ss_pred EEecccchhhHhhHHHHHHh--CccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHHHHH
Confidence 66788888888888887765 577766666666666778888888888887654222 2322222222
Q ss_pred -----HHHHhcC--CHHHHHHHHHHHHHCCCCCCHHH-----H----------------HHHHHHHHHcCChhHHHHHHH
Q 004470 404 -----CGFCLTG--KMVEAEKLFHEMLGRGLEPDEIV-----Y----------------TALIDGYCKAGGMKKAFSLHN 455 (751)
Q Consensus 404 -----~~~~~~g--~~~~A~~~~~~m~~~~~~p~~~~-----~----------------~~li~~~~~~g~~~~A~~~~~ 455 (751)
.-.-+.. +.++++-.-.+++.--+.|+-.. . ..-...+.+.|+++.|.++++
T Consensus 364 ~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~aieilk 443 (840)
T KOG2003|consen 364 KNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDIEGAIEILK 443 (840)
T ss_pred hhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHHHHHHHH
Confidence 1111111 11122211112221112222100 0 011234567777777777777
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHh--cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC
Q 004470 456 NMVHMRLTPNVVTYTALADGLCK--SGELETANELLHEMCRKGLQLNIYTYNSIVNGLCKAGNILQAVKLMEDMEVAGFH 533 (751)
Q Consensus 456 ~~~~~~~~~~~~~~~~li~~~~~--~g~~~~A~~l~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~ 533 (751)
-..+..-..-...-+.|-..+.- -.++..|.+.-+...... .-+......-.+.....|++++|.+.+++......
T Consensus 444 v~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~d-ryn~~a~~nkgn~~f~ngd~dka~~~ykeal~nda- 521 (840)
T KOG2003|consen 444 VFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNID-RYNAAALTNKGNIAFANGDLDKAAEFYKEALNNDA- 521 (840)
T ss_pred HHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhccc-ccCHHHhhcCCceeeecCcHHHHHHHHHHHHcCch-
Confidence 66654322222222322222222 234556666555554331 11222222222333456788888888888775432
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhhHHHHH
Q 004470 534 PDTFTYTTIMDAYCKSGEMVKAHELLRDMLDKGLQPSVVTFNVLMNGFCMSGMIEDGEKLLKWMLEKGLKPNAATYNPLI 613 (751)
Q Consensus 534 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~g~~p~~~~~~~l~ 613 (751)
..+.....+.-.+-+.|++++|++.|-++... +..+......+.+.|-...+...|++++.+.... ++.|..+...|.
T Consensus 522 sc~ealfniglt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie~~~q~~sl-ip~dp~ilskl~ 599 (840)
T KOG2003|consen 522 SCTEALFNIGLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIELLMQANSL-IPNDPAILSKLA 599 (840)
T ss_pred HHHHHHHHhcccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhccc-CCCCHHHHHHHH
Confidence 22222223334566778888888888776543 2346677777777888888888888888776654 455677778888
Q ss_pred HHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH-HhcCCH
Q 004470 614 KQHCLRNDMRTTAKIYKGMCAQGITPDGNTYNILLQGHCKARNMKEAWFLHKEMVQKGFNLTTSSYNALIKGF-LKRKKY 692 (751)
Q Consensus 614 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~-~~~g~~ 692 (751)
..|-+.|+-.+|.+.+-+--+. ++-+..+...|...|....-+++|+.+|+++.- +.|+..-|..++..| .+.|++
T Consensus 600 dlydqegdksqafq~~ydsyry-fp~nie~iewl~ayyidtqf~ekai~y~ekaal--iqp~~~kwqlmiasc~rrsgny 676 (840)
T KOG2003|consen 600 DLYDQEGDKSQAFQCHYDSYRY-FPCNIETIEWLAAYYIDTQFSEKAINYFEKAAL--IQPNQSKWQLMIASCFRRSGNY 676 (840)
T ss_pred HHhhcccchhhhhhhhhhcccc-cCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHh--cCccHHHHHHHHHHHHHhcccH
Confidence 8888888888888776655543 445777777888888888888888888887653 567888887765544 457888
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHH
Q 004470 693 LEARELFEEMRRGGLVADREIYYFFVDINFEEGNTEITLELCDA 736 (751)
Q Consensus 693 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 736 (751)
+.|+.+|+..-++ ++.|......|++.....|- .+|.++-++
T Consensus 677 qka~d~yk~~hrk-fpedldclkflvri~~dlgl-~d~key~~k 718 (840)
T KOG2003|consen 677 QKAFDLYKDIHRK-FPEDLDCLKFLVRIAGDLGL-KDAKEYADK 718 (840)
T ss_pred HHHHHHHHHHHHh-CccchHHHHHHHHHhccccc-hhHHHHHHH
Confidence 8888888887664 56677777777777766664 334444333
No 35
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.72 E-value=5.9e-12 Score=124.43 Aligned_cols=457 Identities=12% Similarity=0.077 Sum_probs=320.6
Q ss_pred CCCCHHHHHHHHHhchhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 004470 233 TCDGLRMVVKSFTEFPELGICWNTASYNIMIHCLCRFGKIKEAHLLLLQMELRGCSPDVVSFSTIINGYCYLGELQRVLK 312 (751)
Q Consensus 233 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~ 312 (751)
.++++..|+.+|++++..+.. +...|-.-+.+-++...+..|..++++....-+..| ..|...+..--..|++..|.+
T Consensus 85 sq~e~~RARSv~ERALdvd~r-~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVd-qlWyKY~ymEE~LgNi~gaRq 162 (677)
T KOG1915|consen 85 SQKEIQRARSVFERALDVDYR-NITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVD-QLWYKYIYMEEMLGNIAGARQ 162 (677)
T ss_pred hHHHHHHHHHHHHHHHhcccc-cchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHH-HHHHHHHHHHHHhcccHHHHH
Confidence 346667777777777776544 677777788888888888888888888776422122 345555555566788888999
Q ss_pred HHHHHHHCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCC
Q 004470 313 LIEEMQIKGLKPNPYTYNSVVRLLCKTSKVVEAETILREMMNQGIVPDNVIYTTLIDGFCKMGNVAAAYRLFDEMRGLNI 392 (751)
Q Consensus 313 ~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 392 (751)
+|++..+. .|+..+|.+.|+.-.+-...+.|..+++...-. .|++.+|.-.+..--+.|++..|..+|+...+.--
T Consensus 163 iferW~~w--~P~eqaW~sfI~fElRykeieraR~IYerfV~~--HP~v~~wikyarFE~k~g~~~~aR~VyerAie~~~ 238 (677)
T KOG1915|consen 163 IFERWMEW--EPDEQAWLSFIKFELRYKEIERARSIYERFVLV--HPKVSNWIKYARFEEKHGNVALARSVYERAIEFLG 238 (677)
T ss_pred HHHHHHcC--CCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhee--cccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhh
Confidence 98888876 788888998888888888888899888887764 68888888888888888888888888887765311
Q ss_pred C--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHHcCC---hhHHHH-----HHHHHHhC
Q 004470 393 I--PDLLTYTAIICGFCLTGKMVEAEKLFHEMLGRGLEPD--EIVYTALIDGYCKAGG---MKKAFS-----LHNNMVHM 460 (751)
Q Consensus 393 ~--p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~--~~~~~~li~~~~~~g~---~~~A~~-----~~~~~~~~ 460 (751)
. -+...+.+...--..+..++.|.-+|+-.++. ++.+ ...|..+...=-+-|+ +++++- -++.+++.
T Consensus 239 ~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~-~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~ 317 (677)
T KOG1915|consen 239 DDEEAEILFVAFAEFEERQKEYERARFIYKYALDH-IPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSK 317 (677)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHh
Confidence 1 01222333333334567788888888888776 3323 3344433333333444 333332 23444444
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH-H-HHHHHH--------HHHHHcCCHHHHHHHHHHHHHC
Q 004470 461 RLTPNVVTYTALADGLCKSGELETANELLHEMCRKGLQLNI-Y-TYNSIV--------NGLCKAGNILQAVKLMEDMEVA 530 (751)
Q Consensus 461 ~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~-~-~~~~li--------~~~~~~g~~~~A~~~~~~~~~~ 530 (751)
+ +-|-.+|-..++.....|+.+...++++..+.. ++|-. . .|...| -.-....+++.+.+++....+.
T Consensus 318 n-p~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~l 395 (677)
T KOG1915|consen 318 N-PYNYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDL 395 (677)
T ss_pred C-CCCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh
Confidence 4 347788888888888889999999999999876 34422 1 121111 1223567889999999988873
Q ss_pred CCCCCHHHHHHHHHHH----HHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCH
Q 004470 531 GFHPDTFTYTTIMDAY----CKSGEMVKAHELLRDMLDKGLQPSVVTFNVLMNGFCMSGMIEDGEKLLKWMLEKGLKPNA 606 (751)
Q Consensus 531 ~~~~~~~~~~~li~~~----~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~g~~p~~ 606 (751)
+|-...||.-+--.| .++.++..|.+++...+ |..|...+|...|..-.+.++++....++++.++-++. +.
T Consensus 396 -IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AI--G~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~Pe-~c 471 (677)
T KOG1915|consen 396 -IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAI--GKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFSPE-NC 471 (677)
T ss_pred -cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHh--ccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcChH-hh
Confidence 455566665543333 46788999999998877 56888899999999888999999999999999987533 66
Q ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 004470 607 ATYNPLIKQHCLRNDMRTTAKIYKGMCAQGIT-PDGNTYNILLQGHCKARNMKEAWFLHKEMVQKGFNLTTSSYNALIKG 685 (751)
Q Consensus 607 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~-p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~ 685 (751)
.+|......-...|+.+.|..+|+-++.+... .....+...|+.-...|.++.|..+|+++++.. +...+|.+.+.-
T Consensus 472 ~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt--~h~kvWisFA~f 549 (677)
T KOG1915|consen 472 YAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDRT--QHVKVWISFAKF 549 (677)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhc--ccchHHHhHHHH
Confidence 78888877778889999999999998875321 123456677777778999999999999999863 244466666544
Q ss_pred HH-----hcC-----------CHHHHHHHHHHHHH
Q 004470 686 FL-----KRK-----------KYLEARELFEEMRR 704 (751)
Q Consensus 686 ~~-----~~g-----------~~~~A~~~~~~~~~ 704 (751)
-. +.| ....|.++|+++..
T Consensus 550 e~s~~~~~~~~~~~~~e~~~~~~~~AR~iferAn~ 584 (677)
T KOG1915|consen 550 EASASEGQEDEDLAELEITDENIKRARKIFERANT 584 (677)
T ss_pred hccccccccccchhhhhcchhHHHHHHHHHHHHHH
Confidence 33 334 56788889988765
No 36
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.72 E-value=7.4e-12 Score=123.73 Aligned_cols=471 Identities=11% Similarity=0.104 Sum_probs=352.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHH
Q 004470 257 ASYNIMIHCLCRFGKIKEAHLLLLQMELRGCSPDVVSFSTIINGYCYLGELQRVLKLIEEMQIKGLKPNPYTYNSVVRLL 336 (751)
Q Consensus 257 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~ 336 (751)
..|-.-...--.++++..|..+|++.+... ..+...|-..+..-.+...+..|..++++.+..=...| ..|--.+..-
T Consensus 74 ~~WikYaqwEesq~e~~RARSv~ERALdvd-~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVd-qlWyKY~ymE 151 (677)
T KOG1915|consen 74 QVWIKYAQWEESQKEIQRARSVFERALDVD-YRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVD-QLWYKYIYME 151 (677)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHhcc-cccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHH-HHHHHHHHHH
Confidence 334444444456788899999999998765 36788888899999999999999999999987622222 2344445555
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 004470 337 CKTSKVVEAETILREMMNQGIVPDNVIYTTLIDGFCKMGNVAAAYRLFDEMRGLNIIPDLLTYTAIICGFCLTGKMVEAE 416 (751)
Q Consensus 337 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~ 416 (751)
-..|++..|.++|+.-.+- .|+..+|++.|..-.+.+.++.|..+|+...-. .|++.+|-....---+.|+..-|.
T Consensus 152 E~LgNi~gaRqiferW~~w--~P~eqaW~sfI~fElRykeieraR~IYerfV~~--HP~v~~wikyarFE~k~g~~~~aR 227 (677)
T KOG1915|consen 152 EMLGNIAGARQIFERWMEW--EPDEQAWLSFIKFELRYKEIERARSIYERFVLV--HPKVSNWIKYARFEEKHGNVALAR 227 (677)
T ss_pred HHhcccHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhee--cccHHHHHHHHHHHHhcCcHHHHH
Confidence 6689999999999999886 899999999999999999999999999998764 489999999888888999999999
Q ss_pred HHHHHHHHC-CC-CCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHH------
Q 004470 417 KLFHEMLGR-GL-EPDEIVYTALIDGYCKAGGMKKAFSLHNNMVHMRLTPN-VVTYTALADGLCKSGELETANE------ 487 (751)
Q Consensus 417 ~~~~~m~~~-~~-~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~------ 487 (751)
.+|+..++. |- ..+...+.+....=.++..++.|..+|+-.++.=++.. ...|..+..---+-|+.....+
T Consensus 228 ~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KR 307 (677)
T KOG1915|consen 228 SVYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKR 307 (677)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhh
Confidence 999988775 11 11233445555544567788999999998887633211 3455555554455566443332
Q ss_pred --HHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH-------HHHHHHHHHH---HHcCCHHHH
Q 004470 488 --LLHEMCRKGLQLNIYTYNSIVNGLCKAGNILQAVKLMEDMEVAGFHPDT-------FTYTTIMDAY---CKSGEMVKA 555 (751)
Q Consensus 488 --l~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~-------~~~~~li~~~---~~~g~~~~A 555 (751)
-++.+++.+ +.|-.+|--.+..-...|+.+...++++++... ++|-. ..|--+=-++ ....+.+.+
T Consensus 308 k~qYE~~v~~n-p~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ert 385 (677)
T KOG1915|consen 308 KFQYEKEVSKN-PYNYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVERT 385 (677)
T ss_pred hhHHHHHHHhC-CCCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Confidence 234455543 447788888888888899999999999999875 45532 1121111111 356899999
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHH----HhcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHH
Q 004470 556 HELLRDMLDKGLQPSVVTFNVLMNGF----CMSGMIEDGEKLLKWMLEKGLKPNAATYNPLIKQHCLRNDMRTTAKIYKG 631 (751)
Q Consensus 556 ~~~~~~~~~~~~~p~~~~~~~li~~~----~~~g~~~~A~~l~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 631 (751)
.++++..++. ++....||.-+--.| .++.++..|.+++...+ |..|...+|...|..-.+.++++....++++
T Consensus 386 r~vyq~~l~l-IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AI--G~cPK~KlFk~YIelElqL~efDRcRkLYEk 462 (677)
T KOG1915|consen 386 RQVYQACLDL-IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAI--GKCPKDKLFKGYIELELQLREFDRCRKLYEK 462 (677)
T ss_pred HHHHHHHHhh-cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHh--ccCCchhHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 9999999984 555666665554444 46789999999998877 5588999999999999999999999999999
Q ss_pred HHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 004470 632 MCAQGITPDGNTYNILLQGHCKARNMKEAWFLHKEMVQKG-FNLTTSSYNALIKGFLKRKKYLEARELFEEMRRGGLVAD 710 (751)
Q Consensus 632 m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~-~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 710 (751)
.++.+ +-|..+|......-...|+.+.|..+|+-+++.. +......|-+.|+.-...|.++.|..+++++++. .+.
T Consensus 463 fle~~-Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~r--t~h 539 (677)
T KOG1915|consen 463 FLEFS-PENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDR--TQH 539 (677)
T ss_pred HHhcC-hHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHh--ccc
Confidence 99965 2367778888887788999999999999999863 2223457778888888999999999999999985 344
Q ss_pred HHHHHHHHHHHH-----hcC-----------ChhHHHHHHHHHHHcC
Q 004470 711 REIYYFFVDINF-----EEG-----------NTEITLELCDAAIECY 741 (751)
Q Consensus 711 ~~~~~~l~~~~~-----~~g-----------~~~~A~~~~~~~~~~~ 741 (751)
..+|..++..-. +.| +...|.++|+++....
T Consensus 540 ~kvWisFA~fe~s~~~~~~~~~~~~~e~~~~~~~~AR~iferAn~~~ 586 (677)
T KOG1915|consen 540 VKVWISFAKFEASASEGQEDEDLAELEITDENIKRARKIFERANTYL 586 (677)
T ss_pred chHHHhHHHHhccccccccccchhhhhcchhHHHHHHHHHHHHHHHH
Confidence 456666554322 445 6778888998886543
No 37
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.66 E-value=2.5e-10 Score=117.77 Aligned_cols=586 Identities=15% Similarity=0.132 Sum_probs=372.2
Q ss_pred CChHHHHHHHHhhhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHcCCCCCchhhhHHHHHHHHHhhhcCCCChhhH
Q 004470 109 SDYRLVLDFFDWACLRREPILEARCIVVQISVAAKDLKTAHGLIHDFWAKPNLDASIAFTHFVERLIYTYKDWGSDPHVF 188 (751)
Q Consensus 109 ~~~~~al~~f~~~~~~~~~~~~~~~~~~~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 188 (751)
+.....|.+.+.+.+.+|.|.++....+-.|...|+-++|.......++.+ +.++..|
T Consensus 21 kQYkkgLK~~~~iL~k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d----------------------~~S~vCw 78 (700)
T KOG1156|consen 21 KQYKKGLKLIKQILKKFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRND----------------------LKSHVCW 78 (700)
T ss_pred HHHHhHHHHHHHHHHhCCccchhHHhccchhhcccchHHHHHHHHHHhccC----------------------cccchhH
Confidence 345778888888888899999999999999999999999999999888765 5667789
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhCCCccCHHhHHHHHHHHHhCCCCHHHHHHHHHhchhcCCCcCHHHHHHHHHHHHh
Q 004470 189 DIFFQVLVEARKLNEARKLFEKLLNYGLVISVDSCNLFLSRLSNTCDGLRMVVKSFTEFPELGICWNTASYNIMIHCLCR 268 (751)
Q Consensus 189 ~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 268 (751)
..++-.+....++++|++.|..+++. .||+...-.=++-+..+.++++-......+..+..+. .-..|...+.++.-
T Consensus 79 Hv~gl~~R~dK~Y~eaiKcy~nAl~~--~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~-~ra~w~~~Avs~~L 155 (700)
T KOG1156|consen 79 HVLGLLQRSDKKYDEAIKCYRNALKI--EKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRPS-QRASWIGFAVAQHL 155 (700)
T ss_pred HHHHHHHhhhhhHHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhh-hHHHHHHHHHHHHH
Confidence 99999999999999999999999987 5776554444444444557777777777777776444 56778888889999
Q ss_pred cCCHHHHHHHHHHHHhcC-CCCCHHHHHHHH------HHHHhcCCHHHHHHHHHHHHHCCCCCCcccH-HHHHHHHHhcC
Q 004470 269 FGKIKEAHLLLLQMELRG-CSPDVVSFSTII------NGYCYLGELQRVLKLIEEMQIKGLKPNPYTY-NSVVRLLCKTS 340 (751)
Q Consensus 269 ~g~~~~A~~~~~~m~~~g-~~p~~~~~~~li------~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~-~~li~~~~~~g 340 (751)
.|++..|..++++..+.. -.|+...|.-.. ....+.|.+++|.+-+..-... + .|...+ ..-...+.+.+
T Consensus 156 ~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~-i-~Dkla~~e~ka~l~~kl~ 233 (700)
T KOG1156|consen 156 LGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQ-I-VDKLAFEETKADLLMKLG 233 (700)
T ss_pred HHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhH-H-HHHHHHhhhHHHHHHHHh
Confidence 999999999999987643 246666554433 3345678888888887765443 1 133332 34456788999
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHH-HHHHcCCHHHHH-HHHHHHHhCCCCCCHHHHHHH-HHHHHhcCCHHHHHH
Q 004470 341 KVVEAETILREMMNQGIVPDNVIYTTLID-GFCKMGNVAAAY-RLFDEMRGLNIIPDLLTYTAI-ICGFCLTGKMVEAEK 417 (751)
Q Consensus 341 ~~~~A~~~~~~m~~~g~~p~~~~~~~li~-~~~~~g~~~~A~-~~~~~m~~~~~~p~~~~~~~l-i~~~~~~g~~~~A~~ 417 (751)
++++|..++..++.. .||...|..... ++.+-.+.-++. .+|....+.-.. ...-..+ ++..-...-.+..-.
T Consensus 234 ~lEeA~~~y~~Ll~r--nPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r--~e~p~Rlplsvl~~eel~~~vdk 309 (700)
T KOG1156|consen 234 QLEEAVKVYRRLLER--NPDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPR--HECPRRLPLSVLNGEELKEIVDK 309 (700)
T ss_pred hHHhHHHHHHHHHhh--CchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcc--cccchhccHHHhCcchhHHHHHH
Confidence 999999999999998 577766665544 443444444444 666665543211 1111111 111111222333445
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHH----HhCC----------CCCCHHH--HHHHHHHHHhcCC
Q 004470 418 LFHEMLGRGLEPDEIVYTALIDGYCKAGGMKKAFSLHNNM----VHMR----------LTPNVVT--YTALADGLCKSGE 481 (751)
Q Consensus 418 ~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~----~~~~----------~~~~~~~--~~~li~~~~~~g~ 481 (751)
++..+++.|+++ ++..+...|-.....+-..++.-.+ ...| -+|.... +..++..+-+.|+
T Consensus 310 yL~~~l~Kg~p~---vf~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~ 386 (700)
T KOG1156|consen 310 YLRPLLSKGVPS---VFKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGD 386 (700)
T ss_pred HHHHHhhcCCCc---hhhhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHccc
Confidence 666677777664 2333333332211111111111111 1111 1344444 4457788899999
Q ss_pred HHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 004470 482 LETANELLHEMCRKGLQLNI-YTYNSIVNGLCKAGNILQAVKLMEDMEVAGFHPDTFTYTTIMDAYCKSGEMVKAHELLR 560 (751)
Q Consensus 482 ~~~A~~l~~~m~~~g~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 560 (751)
++.|...++..+.+ .|+. ..|..=...+...|++++|..++++..+.+ .+|...-.--.....+.++.++|.++..
T Consensus 387 ~~~A~~yId~AIdH--TPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD-~aDR~INsKcAKYmLrAn~i~eA~~~~s 463 (700)
T KOG1156|consen 387 YEVALEYIDLAIDH--TPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELD-TADRAINSKCAKYMLRANEIEEAEEVLS 463 (700)
T ss_pred HHHHHHHHHHHhcc--CchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcc-chhHHHHHHHHHHHHHccccHHHHHHHH
Confidence 99999999999876 4443 355555678889999999999999998876 5676665566777788999999999999
Q ss_pred HHHhCCCCCCHHH--------HHHH--HHHHHhcCChhHHHHHHHHHHHc-----CCCCCHhhH----------HHHHHH
Q 004470 561 DMLDKGLQPSVVT--------FNVL--MNGFCMSGMIEDGEKLLKWMLEK-----GLKPNAATY----------NPLIKQ 615 (751)
Q Consensus 561 ~~~~~~~~p~~~~--------~~~l--i~~~~~~g~~~~A~~l~~~~~~~-----g~~p~~~~~----------~~l~~~ 615 (751)
...+.|. +... |-.+ ..+|.+.|++..|++-|..+... .-+.|-.|| .-|+..
T Consensus 464 kFTr~~~--~~~~~L~~mqcmWf~~E~g~ay~r~~k~g~ALKkfh~i~k~~~~~~~dqfDfhtyc~rk~tlrsYv~ll~~ 541 (700)
T KOG1156|consen 464 KFTREGF--GAVNNLAEMQCMWFQLEDGEAYLRQNKLGLALKKFHEIEKHYKTWSEDQFDFHTYCMRKGTLRSYVELLEW 541 (700)
T ss_pred Hhhhccc--chhhhHHHhhhHHHhHhhhHHHHHHHHHHHHHHHHhhHHHHHHHHhhhhhhHHHHHHhcCcHHHHHHHHHH
Confidence 8887764 2222 2111 34677888888887766555432 112233333 222222
Q ss_pred HHHcC-------CHHHHHHHHHHHHHCCCCCCHH-----HHHHHH----HHHHhc-CCHHHHHHHHHHHHH---------
Q 004470 616 HCLRN-------DMRTTAKIYKGMCAQGITPDGN-----TYNILL----QGHCKA-RNMKEAWFLHKEMVQ--------- 669 (751)
Q Consensus 616 ~~~~g-------~~~~A~~~~~~m~~~g~~p~~~-----~~~~li----~~~~~~-g~~~~A~~~~~~~~~--------- 669 (751)
.-... -...|+++|-.|.+. |+.. ....+- ....+. .+-.+|.+.-+.+.+
T Consensus 542 ~d~L~~~p~y~~Aa~~Ai~iYl~l~d~---p~~~~~~~~~~~~ms~e~kk~~~k~rk~~kk~~~e~~~~~~~~~~~~~s~ 618 (700)
T KOG1156|consen 542 EDNLRSSPYYLRAAKGAIEIYLRLHDS---PNMYTNKADEIEKMSDEEKKIKKKQRKAKKKAKKEAKKKKDKKKKEAKSQ 618 (700)
T ss_pred HHhhccChHHHHHHHHHHHHHHHHhcC---cccccccchhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccc
Confidence 11111 123567777777653 2200 011111 111111 111222222222211
Q ss_pred CCCC--CCHHHHHHHHHHHHhcCC-HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 004470 670 KGFN--LTTSSYNALIKGFLKRKK-YLEARELFEEMRRGGLVADREIYYFFVDINFEEGNTEITLELCDAAIEC 740 (751)
Q Consensus 670 ~~~~--p~~~~~~~l~~~~~~~g~-~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 740 (751)
.|.+ ||.. .++..+.+..+ .++|.+++......+ +.+..+|-.-...|.+.|++.-|.+.++++-..
T Consensus 619 ~~~~~~~d~~---~~gekL~~t~~Pl~ea~kf~~~l~~~~-~~~~~~~iL~~ely~rk~k~~l~~~~~~~~~~~ 688 (700)
T KOG1156|consen 619 SGKPVDIDED---PFGEKLLKTEDPLEEARKFLPNLQHKG-KEKGETYILSFELYYRKGKFLLALACLNNAEGI 688 (700)
T ss_pred cCCCCCCCCc---chhhhHhhcCChHHHHHHHHHHHHHhc-ccchhhhhhhHHHHHHHHHHHHHHHHHHhhhhh
Confidence 2222 3433 45566666655 477999999888875 677888888889999999999999988887553
No 38
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.66 E-value=4.1e-13 Score=142.77 Aligned_cols=293 Identities=15% Similarity=0.088 Sum_probs=172.6
Q ss_pred HcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 004470 443 KAGGMKKAFSLHNNMVHMRLTPNVVTYTALADGLCKSGELETANELLHEMCRKGLQLNIYTYNSIVNGLCKAGNILQAVK 522 (751)
Q Consensus 443 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~ 522 (751)
..|+++.|.+.+.+..+.... ....+-.....+.+.|+.+.|.+.+.+..+....+...........+...|+++.|..
T Consensus 96 ~~g~~~~A~~~l~~~~~~~~~-~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al~ 174 (409)
T TIGR00540 96 AEGDYAKAEKLIAKNADHAAE-PVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAARH 174 (409)
T ss_pred hCCCHHHHHHHHHHHhhcCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHHH
Confidence 355555555555555443211 1222333344455556666666666655544222121222223455555666666666
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHH-H---HHHHHHhcCChhHHHHHHHHHH
Q 004470 523 LMEDMEVAGFHPDTFTYTTIMDAYCKSGEMVKAHELLRDMLDKGLQPSVVTFN-V---LMNGFCMSGMIEDGEKLLKWML 598 (751)
Q Consensus 523 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~-~---li~~~~~~g~~~~A~~l~~~~~ 598 (751)
.++.+.+.. |.+...+..+...+...|++++|.+.+..+.+.+.. +...+. . ...+....+..+++.+.+..+.
T Consensus 175 ~l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~-~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~ 252 (409)
T TIGR00540 175 GVDKLLEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLF-DDEEFADLEQKAEIGLLDEAMADEGIDGLLNWW 252 (409)
T ss_pred HHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 666666554 445555556666666666666666666666655432 222221 1 1111122222233333444444
Q ss_pred HcCC---CCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHH---HHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 004470 599 EKGL---KPNAATYNPLIKQHCLRNDMRTTAKIYKGMCAQGITPDGNT---YNILLQGHCKARNMKEAWFLHKEMVQKGF 672 (751)
Q Consensus 599 ~~g~---~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~---~~~li~~~~~~g~~~~A~~~~~~~~~~~~ 672 (751)
+... +.+...+..+...+...|+.++|.+++++..+.. ||... ...........++.+.+.+.+++..+..+
T Consensus 253 ~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~--pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~p 330 (409)
T TIGR00540 253 KNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKL--GDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNVD 330 (409)
T ss_pred HHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhC--CCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhCC
Confidence 3311 1256667777777778888888888888777743 33321 11122223345778888888888887754
Q ss_pred CCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcC
Q 004470 673 NLTT--SSYNALIKGFLKRKKYLEARELFEEMRRGGLVADREIYYFFVDINFEEGNTEITLELCDAAIECY 741 (751)
Q Consensus 673 ~p~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 741 (751)
. |+ ....++++.+.+.|++++|.+.|++.......|+...+..++..+.+.|+.++|.+++++.+..-
T Consensus 331 ~-~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l~~~ 400 (409)
T TIGR00540 331 D-KPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSLGLM 400 (409)
T ss_pred C-ChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 4 66 77789999999999999999999964443457888888899999999999999999999886643
No 39
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.65 E-value=1.4e-11 Score=121.83 Aligned_cols=162 Identities=13% Similarity=0.062 Sum_probs=73.9
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHH
Q 004470 539 YTTIMDAYCKSGEMVKAHELLRDMLDKGLQPSVVTFNVLMNGFCMSGMIEDGEKLLKWMLEKGLKPNAATYNPLIKQHCL 618 (751)
Q Consensus 539 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~g~~p~~~~~~~l~~~~~~ 618 (751)
...+.+.|.-.++.++|...|++.++.+ +.....|+.+..-|....+...|.+-++.+++.. +-|-..|-.|.++|..
T Consensus 333 CCiIaNYYSlr~eHEKAv~YFkRALkLN-p~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~-p~DyRAWYGLGQaYei 410 (559)
T KOG1155|consen 333 CCIIANYYSLRSEHEKAVMYFKRALKLN-PKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDIN-PRDYRAWYGLGQAYEI 410 (559)
T ss_pred eeeehhHHHHHHhHHHHHHHHHHHHhcC-cchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcC-chhHHHHhhhhHHHHH
Confidence 3334444444444444555554444433 2233344444444444444444554444444432 1244444444444444
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 004470 619 RNDMRTTAKIYKGMCAQGITPDGNTYNILLQGHCKARNMKEAWFLHKEMVQKGFNLTTSSYNALIKGFLKRKKYLEAREL 698 (751)
Q Consensus 619 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~ 698 (751)
.+-..-|+-.|++..+.. +.|...|.+|..+|.+.++.++|++.|..++..|-. +...+..|++.|-+.++.++|...
T Consensus 411 m~Mh~YaLyYfqkA~~~k-PnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dt-e~~~l~~LakLye~l~d~~eAa~~ 488 (559)
T KOG1155|consen 411 MKMHFYALYYFQKALELK-PNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDT-EGSALVRLAKLYEELKDLNEAAQY 488 (559)
T ss_pred hcchHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHhccHHHHHHHHHHHHhcccc-chHHHHHHHHHHHHHHhHHHHHHH
Confidence 444444444444444421 113444455555555555555555555554444322 334444455555555555555544
Q ss_pred HHHHHH
Q 004470 699 FEEMRR 704 (751)
Q Consensus 699 ~~~~~~ 704 (751)
|++.++
T Consensus 489 yek~v~ 494 (559)
T KOG1155|consen 489 YEKYVE 494 (559)
T ss_pred HHHHHH
Confidence 444443
No 40
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.65 E-value=8.4e-13 Score=139.55 Aligned_cols=292 Identities=11% Similarity=0.057 Sum_probs=172.3
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHcCCCCCchhhhHHHHHHHHHhhhcCCCChhhHHHH-HHHHHhcCChhHHHHHHHHH
Q 004470 133 CIVVQISVAAKDLKTAHGLIHDFWAKPNLDASIAFTHFVERLIYTYKDWGSDPHVFDIF-FQVLVEARKLNEARKLFEKL 211 (751)
Q Consensus 133 ~~~~~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l-~~~~~~~g~~~~A~~~~~~~ 211 (751)
+.-+.+....|+++.|++.+...-.. +..|.++..+ +.+-.+.|+++.|.+.+.++
T Consensus 88 ~~~gl~a~~eGd~~~A~k~l~~~~~~-----------------------~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A 144 (398)
T PRK10747 88 TEQALLKLAEGDYQQVEKLMTRNADH-----------------------AEQPVVNYLLAAEAAQQRGDEARANQHLERA 144 (398)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHhc-----------------------ccchHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 34455555578888888666653322 2234444444 44447888888888888888
Q ss_pred HhCCCccCHHhHH-HHHHHHHhCCCCHHHHHHHHHhchhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC
Q 004470 212 LNYGLVISVDSCN-LFLSRLSNTCDGLRMVVKSFTEFPELGICWNTASYNIMIHCLCRFGKIKEAHLLLLQMELRGCSPD 290 (751)
Q Consensus 212 ~~~g~~p~~~~~~-~ll~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 290 (751)
.+. .|+..... .....+....|+++.|.+.++++.+.+|. +......+...|.+.|++++|.+++..+.+.+..++
T Consensus 145 ~~~--~~~~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~~P~-~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~ 221 (398)
T PRK10747 145 AEL--ADNDQLPVEITRVRIQLARNENHAARHGVDKLLEVAPR-HPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDE 221 (398)
T ss_pred Hhc--CCcchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCH
Confidence 775 56654333 23355555678888888888888887765 677788888888888888888888888877654322
Q ss_pred HH-------HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH
Q 004470 291 VV-------SFSTIINGYCYLGELQRVLKLIEEMQIKGLKPNPYTYNSVVRLLCKTSKVVEAETILREMMNQGIVPDNVI 363 (751)
Q Consensus 291 ~~-------~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~ 363 (751)
.. +|..++.......+.+...++++.+.+. .+.++.....+...+...|+.++|.+++++..+. ++|...
T Consensus 222 ~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l 298 (398)
T PRK10747 222 EHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERL 298 (398)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHH
Confidence 21 2222233223333444444444444332 2335555566666666666666666666666553 333321
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q 004470 364 YTTLIDGFCKMGNVAAAYRLFDEMRGLNIIPDLLTYTAIICGFCLTGKMVEAEKLFHEMLGRGLEPDEIVYTALIDGYCK 443 (751)
Q Consensus 364 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~ 443 (751)
.++.+.+..++.+++.+..+...+..+. |...+..+...+.+.|++++|.+.|+.+.+. .|+..++..+...+.+
T Consensus 299 --~~l~~~l~~~~~~~al~~~e~~lk~~P~-~~~l~l~lgrl~~~~~~~~~A~~~le~al~~--~P~~~~~~~La~~~~~ 373 (398)
T PRK10747 299 --VLLIPRLKTNNPEQLEKVLRQQIKQHGD-TPLLWSTLGQLLMKHGEWQEASLAFRAALKQ--RPDAYDYAWLADALDR 373 (398)
T ss_pred --HHHHhhccCCChHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHH
Confidence 1222333446666666666666555432 4445555566666666666666666666653 4555555566666666
Q ss_pred cCChhHHHHHHHHHH
Q 004470 444 AGGMKKAFSLHNNMV 458 (751)
Q Consensus 444 ~g~~~~A~~~~~~~~ 458 (751)
.|+.++|.+++++..
T Consensus 374 ~g~~~~A~~~~~~~l 388 (398)
T PRK10747 374 LHKPEEAAAMRRDGL 388 (398)
T ss_pred cCCHHHHHHHHHHHH
Confidence 666666666665543
No 41
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.65 E-value=1.2e-12 Score=138.38 Aligned_cols=284 Identities=14% Similarity=0.062 Sum_probs=186.4
Q ss_pred cCChhHHHHHHHHHHhCCCCCCHHH-HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHH--HHHHHHHHHcCCHHHH
Q 004470 444 AGGMKKAFSLHNNMVHMRLTPNVVT-YTALADGLCKSGELETANELLHEMCRKGLQLNIYTY--NSIVNGLCKAGNILQA 520 (751)
Q Consensus 444 ~g~~~~A~~~~~~~~~~~~~~~~~~-~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~~--~~li~~~~~~g~~~~A 520 (751)
.|+++.|.+.+....+.. +++.. |........+.|+++.|.+.+.++.+. .|+.... ......+...|+++.|
T Consensus 97 eGd~~~A~k~l~~~~~~~--~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~A 172 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHA--EQPVVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAA 172 (398)
T ss_pred CCCHHHHHHHHHHHHhcc--cchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHH
Confidence 466666665555544331 11222 222233335666667777666666654 2332211 1224556666777777
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCH-------HHHHHHHHHHHhcCChhHHHHH
Q 004470 521 VKLMEDMEVAGFHPDTFTYTTIMDAYCKSGEMVKAHELLRDMLDKGLQPSV-------VTFNVLMNGFCMSGMIEDGEKL 593 (751)
Q Consensus 521 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~-------~~~~~li~~~~~~g~~~~A~~l 593 (751)
...++.+.+.. +.+...+..+...|.+.|++++|.+++..+.+.+..++. .+|..++.......+.+...++
T Consensus 173 l~~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~ 251 (398)
T PRK10747 173 RHGVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRW 251 (398)
T ss_pred HHHHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 77777766654 455666666667777777777777777777665433221 1222233333333444555555
Q ss_pred HHHHHHcCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 004470 594 LKWMLEKGLKPNAATYNPLIKQHCLRNDMRTTAKIYKGMCAQGITPDGNTYNILLQGHCKARNMKEAWFLHKEMVQKGFN 673 (751)
Q Consensus 594 ~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~ 673 (751)
++.+.+. .+.+......+...+...|+.++|.+++++..+. .|+.... ++.+....++.+++++..++..+..+.
T Consensus 252 w~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l~--~l~~~l~~~~~~~al~~~e~~lk~~P~ 326 (398)
T PRK10747 252 WKNQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERLV--LLIPRLKTNNPEQLEKVLRQQIKQHGD 326 (398)
T ss_pred HHhCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHH--HHHhhccCCChHHHHHHHHHHHhhCCC
Confidence 5555332 2346777788888888899999999998888874 4555332 334445668999999999999887655
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 004470 674 LTTSSYNALIKGFLKRKKYLEARELFEEMRRGGLVADREIYYFFVDINFEEGNTEITLELCDAAIEC 740 (751)
Q Consensus 674 p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 740 (751)
|+..+..++..+.+.|++++|.+.|+++.+. .|+...+..++..+.+.|+.++|.+.+++.+..
T Consensus 327 -~~~l~l~lgrl~~~~~~~~~A~~~le~al~~--~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~ 390 (398)
T PRK10747 327 -TPLLWSTLGQLLMKHGEWQEASLAFRAALKQ--RPDAYDYAWLADALDRLHKPEEAAAMRRDGLML 390 (398)
T ss_pred -CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 7888889999999999999999999999875 688888888999999999999999999988764
No 42
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.64 E-value=1.7e-12 Score=128.91 Aligned_cols=220 Identities=15% Similarity=0.098 Sum_probs=149.2
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 004470 477 CKSGELETANELLHEMCRKGLQLNIYTYNSIVNGLCKAGNILQAVKLMEDMEVAGFHPDTFTYTTIMDAYCKSGEMVKAH 556 (751)
Q Consensus 477 ~~~g~~~~A~~l~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 556 (751)
.-.|+.-.|.+.|+..++....++. .|--+...|....+.++..+.|++....+ +.++.+|..-.+.+.-.+++++|.
T Consensus 337 fL~g~~~~a~~d~~~~I~l~~~~~~-lyI~~a~~y~d~~~~~~~~~~F~~A~~ld-p~n~dvYyHRgQm~flL~q~e~A~ 414 (606)
T KOG0547|consen 337 FLKGDSLGAQEDFDAAIKLDPAFNS-LYIKRAAAYADENQSEKMWKDFNKAEDLD-PENPDVYYHRGQMRFLLQQYEEAI 414 (606)
T ss_pred hhcCCchhhhhhHHHHHhcCcccch-HHHHHHHHHhhhhccHHHHHHHHHHHhcC-CCCCchhHhHHHHHHHHHHHHHHH
Confidence 3456777777777777776544332 25556666777777777777777777766 556667777777777777778888
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCC
Q 004470 557 ELLRDMLDKGLQPSVVTFNVLMNGFCMSGMIEDGEKLLKWMLEKGLKPNAATYNPLIKQHCLRNDMRTTAKIYKGMCAQG 636 (751)
Q Consensus 557 ~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 636 (751)
.-|++.+... +.+...|-.+.-+..+.++++++...|++..++ ++.-+..|+.....+..++++++|.+.|+..++.
T Consensus 415 aDF~Kai~L~-pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~L- 491 (606)
T KOG0547|consen 415 ADFQKAISLD-PENAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIEL- 491 (606)
T ss_pred HHHHHHhhcC-hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhh-
Confidence 7777777653 335566666666666777788888888777776 3334567777777777778888888888777763
Q ss_pred CCCC---------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004470 637 ITPD---------GNTYNILLQGHCKARNMKEAWFLHKEMVQKGFNLTTSSYNALIKGFLKRKKYLEARELFEEMRR 704 (751)
Q Consensus 637 ~~p~---------~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 704 (751)
.|+ +.+...++-.-.+ +++..|.++++++++.+++ ....|.+|+....++|+.++|+++|++...
T Consensus 492 -E~~~~~~~v~~~plV~Ka~l~~qwk-~d~~~a~~Ll~KA~e~Dpk-ce~A~~tlaq~~lQ~~~i~eAielFEksa~ 565 (606)
T KOG0547|consen 492 -EPREHLIIVNAAPLVHKALLVLQWK-EDINQAENLLRKAIELDPK-CEQAYETLAQFELQRGKIDEAIELFEKSAQ 565 (606)
T ss_pred -ccccccccccchhhhhhhHhhhchh-hhHHHHHHHHHHHHccCch-HHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 232 1122222222233 6777777887777776655 566777777777777888888888877665
No 43
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.64 E-value=1.3e-12 Score=129.68 Aligned_cols=219 Identities=13% Similarity=0.113 Sum_probs=137.3
Q ss_pred HHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 004470 442 CKAGGMKKAFSLHNNMVHMRLTPNVVTYTALADGLCKSGELETANELLHEMCRKGLQLNIYTYNSIVNGLCKAGNILQAV 521 (751)
Q Consensus 442 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~ 521 (751)
.-.|+...|...|+..++....++ ..|-.+...|....+-++..+.|.+..+.+.. |+.+|..-.+...-.+++++|.
T Consensus 337 fL~g~~~~a~~d~~~~I~l~~~~~-~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~-n~dvYyHRgQm~flL~q~e~A~ 414 (606)
T KOG0547|consen 337 FLKGDSLGAQEDFDAAIKLDPAFN-SLYIKRAAAYADENQSEKMWKDFNKAEDLDPE-NPDVYYHRGQMRFLLQQYEEAI 414 (606)
T ss_pred hhcCCchhhhhhHHHHHhcCcccc-hHHHHHHHHHhhhhccHHHHHHHHHHHhcCCC-CCchhHhHHHHHHHHHHHHHHH
Confidence 445667777777777776544322 22556666677777777777777777666543 5556666666666666777777
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcC
Q 004470 522 KLMEDMEVAGFHPDTFTYTTIMDAYCKSGEMVKAHELLRDMLDKGLQPSVVTFNVLMNGFCMSGMIEDGEKLLKWMLEKG 601 (751)
Q Consensus 522 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~g 601 (751)
.-|++..... +.++..|-.+.-+..+.++++++...|++.+++ ++..+..|+.....+...+++++|.+.|+..++.
T Consensus 415 aDF~Kai~L~-pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~L- 491 (606)
T KOG0547|consen 415 ADFQKAISLD-PENAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIEL- 491 (606)
T ss_pred HHHHHHhhcC-hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhh-
Confidence 7777776654 445566666666666777777777777777665 4556667777777777777777777777776654
Q ss_pred CCCC-------Hh--hHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004470 602 LKPN-------AA--TYNPLIKQHCLRNDMRTTAKIYKGMCAQGITP-DGNTYNILLQGHCKARNMKEAWFLHKEMVQ 669 (751)
Q Consensus 602 ~~p~-------~~--~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 669 (751)
.|+ .. +-..++ .+--.+++..|..++++.++.+ | ....|..|...-.+.|+.++|+++|++...
T Consensus 492 -E~~~~~~~v~~~plV~Ka~l-~~qwk~d~~~a~~Ll~KA~e~D--pkce~A~~tlaq~~lQ~~~i~eAielFEksa~ 565 (606)
T KOG0547|consen 492 -EPREHLIIVNAAPLVHKALL-VLQWKEDINQAENLLRKAIELD--PKCEQAYETLAQFELQRGKIDEAIELFEKSAQ 565 (606)
T ss_pred -ccccccccccchhhhhhhHh-hhchhhhHHHHHHHHHHHHccC--chHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 222 11 111111 1123467777777777777643 3 345566777777777777777777776654
No 44
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.63 E-value=1.9e-15 Score=152.59 Aligned_cols=262 Identities=18% Similarity=0.175 Sum_probs=106.5
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc
Q 004470 471 ALADGLCKSGELETANELLHEMCRKG-LQLNIYTYNSIVNGLCKAGNILQAVKLMEDMEVAGFHPDTFTYTTIMDAYCKS 549 (751)
Q Consensus 471 ~li~~~~~~g~~~~A~~l~~~m~~~g-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 549 (751)
.+...+.+.|++++|++++++..... .+.|...|..+....-..++.+.|...++++...+ +-+...+..++.. ...
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~-~~~~~~~~~l~~l-~~~ 90 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASD-KANPQDYERLIQL-LQD 90 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccccc-ccc
Confidence 45677778888888888886654443 23344455555566667788888888888887765 3355566666666 678
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcC-CCCCHhhHHHHHHHHHHcCCHHHHHHH
Q 004470 550 GEMVKAHELLRDMLDKGLQPSVVTFNVLMNGFCMSGMIEDGEKLLKWMLEKG-LKPNAATYNPLIKQHCLRNDMRTTAKI 628 (751)
Q Consensus 550 g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~g-~~p~~~~~~~l~~~~~~~g~~~~A~~~ 628 (751)
+++++|.+++....+. .++...+..++..+...++++++.++++.+.... ..++...|..+...+.+.|+.++|.+.
T Consensus 91 ~~~~~A~~~~~~~~~~--~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~ 168 (280)
T PF13429_consen 91 GDPEEALKLAEKAYER--DGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRD 168 (280)
T ss_dssp -----------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHH
T ss_pred cccccccccccccccc--ccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 8888888888776654 3466667777888888888888888888877542 245667777888888888999999999
Q ss_pred HHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 004470 629 YKGMCAQGITP-DGNTYNILLQGHCKARNMKEAWFLHKEMVQKGFNLTTSSYNALIKGFLKRKKYLEARELFEEMRRGGL 707 (751)
Q Consensus 629 ~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 707 (751)
+++.++. .| |......++..+...|+.+++.++++...+.. +.|+..+..++.+|...|++++|+.++++..+..
T Consensus 169 ~~~al~~--~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~- 244 (280)
T PF13429_consen 169 YRKALEL--DPDDPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKALKLN- 244 (280)
T ss_dssp HHHHHHH---TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHS-
T ss_pred HHHHHHc--CCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhcccccccccccccccccccc-
Confidence 9988885 45 46777888888888899998888888877654 3366778888999999999999999999988854
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 004470 708 VADREIYYFFVDINFEEGNTEITLELCDAAIEC 740 (751)
Q Consensus 708 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 740 (751)
+.|+.+...+++++...|+.++|.++..++.+.
T Consensus 245 p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~~ 277 (280)
T PF13429_consen 245 PDDPLWLLAYADALEQAGRKDEALRLRRQALRL 277 (280)
T ss_dssp TT-HHHHHHHHHHHT------------------
T ss_pred ccccccccccccccccccccccccccccccccc
Confidence 668888889999999999999999988887653
No 45
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.62 E-value=1.6e-12 Score=138.37 Aligned_cols=301 Identities=11% Similarity=0.012 Sum_probs=145.2
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHcCCCCCchhhhHHHHHHHHHhhhcCCCChhhHHHHHHHHHhcCChhHHHHHHHHHH
Q 004470 133 CIVVQISVAAKDLKTAHGLIHDFWAKPNLDASIAFTHFVERLIYTYKDWGSDPHVFDIFFQVLVEARKLNEARKLFEKLL 212 (751)
Q Consensus 133 ~~~~~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 212 (751)
..-+.+....|+++.|++.+.+..+.. |.....+...+.+..+.|+++.|.+.+.++.
T Consensus 88 ~~~glla~~~g~~~~A~~~l~~~~~~~----------------------~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~ 145 (409)
T TIGR00540 88 TEEALLKLAEGDYAKAEKLIAKNADHA----------------------AEPVLNLIKAAEAAQQRGDEARANQHLEEAA 145 (409)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHhhcC----------------------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 344555556777777777776654432 2223344555666777777777777777766
Q ss_pred hCCCccCHH-hHHHHHHHHHhCCCCHHHHHHHHHhchhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCH
Q 004470 213 NYGLVISVD-SCNLFLSRLSNTCDGLRMVVKSFTEFPELGICWNTASYNIMIHCLCRFGKIKEAHLLLLQMELRGCSPDV 291 (751)
Q Consensus 213 ~~g~~p~~~-~~~~ll~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 291 (751)
+. .|+.. ........+....|+++.|...++++.+.+|. +..++..+...+.+.|++++|.+++..+.+.++. +.
T Consensus 146 ~~--~p~~~l~~~~~~a~l~l~~~~~~~Al~~l~~l~~~~P~-~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~-~~ 221 (409)
T TIGR00540 146 EL--AGNDNILVEIARTRILLAQNELHAARHGVDKLLEMAPR-HKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLF-DD 221 (409)
T ss_pred Hh--CCcCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCC-CH
Confidence 54 34432 12222233333556666666666666666544 5556666666666666666666666666665432 22
Q ss_pred HHHHH-HH---HHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 004470 292 VSFST-II---NGYCYLGELQRVLKLIEEMQIKGLKPNPYTYNSVVRLLCKTSKVVEAETILREMMNQGIVPDNVIYTTL 367 (751)
Q Consensus 292 ~~~~~-li---~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l 367 (751)
..+.. -. .+....+..+++.+.+..+.+..... .+.+...+..+
T Consensus 222 ~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~~~p~~--------------------------------~~~~~~l~~~~ 269 (409)
T TIGR00540 222 EEFADLEQKAEIGLLDEAMADEGIDGLLNWWKNQPRH--------------------------------RRHNIALKIAL 269 (409)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHCCHH--------------------------------HhCCHHHHHHH
Confidence 22211 01 11111122222222232222221000 00144444444
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhCCCCCCHHH-HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHHc
Q 004470 368 IDGFCKMGNVAAAYRLFDEMRGLNIIPDLLT-YTAIICGFCLTGKMVEAEKLFHEMLGRGLEPDE--IVYTALIDGYCKA 444 (751)
Q Consensus 368 i~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~-~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~--~~~~~li~~~~~~ 444 (751)
+..+...|+.++|.+++++..+..+...... ...........++.+.+++.++...+. .+-|. ....++...+.+.
T Consensus 270 a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~-~p~~~~~~ll~sLg~l~~~~ 348 (409)
T TIGR00540 270 AEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKN-VDDKPKCCINRALGQLLMKH 348 (409)
T ss_pred HHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHh-CCCChhHHHHHHHHHHHHHc
Confidence 4555555555555555555444322211100 011111122234455555555555543 12223 3444555555666
Q ss_pred CChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 004470 445 GGMKKAFSLHNNMVHMRLTPNVVTYTALADGLCKSGELETANELLHEM 492 (751)
Q Consensus 445 g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m 492 (751)
|++++|.+.|+........|+...+..+...+.+.|+.++|.+++++.
T Consensus 349 ~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~ 396 (409)
T TIGR00540 349 GEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDS 396 (409)
T ss_pred ccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 666666666663222222455555556666666666666666666554
No 46
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.59 E-value=1e-10 Score=115.73 Aligned_cols=309 Identities=14% Similarity=0.084 Sum_probs=159.2
Q ss_pred HHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC--CCCHHHHHHHHHHHHHcCC
Q 004470 369 DGFCKMGNVAAAYRLFDEMRGLNIIPDLLTYTAIICGFCLTGKMVEAEKLFHEMLGRGL--EPDEIVYTALIDGYCKAGG 446 (751)
Q Consensus 369 ~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~--~p~~~~~~~li~~~~~~g~ 446 (751)
.++-.....+++.+-.+...+.|...+...-+....+.....++++|+.+|+++.+... -.|..+|+.++-. +..+
T Consensus 235 ~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv--~~~~ 312 (559)
T KOG1155|consen 235 KAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYV--KNDK 312 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHH--Hhhh
Confidence 34444445566666666665555543333333333444455666666666666665411 0134455544322 2211
Q ss_pred hhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 004470 447 MKKAFSLHNNMVHMRLTPNVVTYTALADGLCKSGELETANELLHEMCRKGLQLNIYTYNSIVNGLCKAGNILQAVKLMED 526 (751)
Q Consensus 447 ~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 526 (751)
-. +..+.+-...--+-.+.|...+.+.|.-.++.++|...|++..+.+.. ....|..+.+-|....+...|++-++.
T Consensus 313 sk--Ls~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~-~~~aWTLmGHEyvEmKNt~AAi~sYRr 389 (559)
T KOG1155|consen 313 SK--LSYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPK-YLSAWTLMGHEYVEMKNTHAAIESYRR 389 (559)
T ss_pred HH--HHHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcc-hhHHHHHhhHHHHHhcccHHHHHHHHH
Confidence 11 111111110000112344555556666666666666666666655433 444556666666666666666666666
Q ss_pred HHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCH
Q 004470 527 MEVAGFHPDTFTYTTIMDAYCKSGEMVKAHELLRDMLDKGLQPSVVTFNVLMNGFCMSGMIEDGEKLLKWMLEKGLKPNA 606 (751)
Q Consensus 527 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~g~~p~~ 606 (751)
+.+.+ +.|-..|-.|.++|.-.+.+.-|+-.|++..+.. +.|...|.+|.++|.+.++.++|++.|......|-. +.
T Consensus 390 Avdi~-p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~k-PnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dt-e~ 466 (559)
T KOG1155|consen 390 AVDIN-PRDYRAWYGLGQAYEIMKMHFYALYYFQKALELK-PNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDT-EG 466 (559)
T ss_pred HHhcC-chhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHhccHHHHHHHHHHHHhcccc-ch
Confidence 66554 5556666666666666666666666666666542 445666666666666666666666666666654422 44
Q ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHH----CCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 004470 607 ATYNPLIKQHCLRNDMRTTAKIYKGMCA----QGITPD--GNTYNILLQGHCKARNMKEAWFLHKEMVQKGFNLTTSSYN 680 (751)
Q Consensus 607 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~----~g~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~ 680 (751)
..+..|...|-+.++.++|...|++-++ .|...+ .....-|...+.+.+++++|.......... .+...--.
T Consensus 467 ~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~~--~~e~eeak 544 (559)
T KOG1155|consen 467 SALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVLKG--ETECEEAK 544 (559)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhcC--CchHHHHH
Confidence 5566666666666666666666655544 222211 122222444455666666666555544432 22333334
Q ss_pred HHHHHHH
Q 004470 681 ALIKGFL 687 (751)
Q Consensus 681 ~l~~~~~ 687 (751)
.|++.+.
T Consensus 545 ~LlReir 551 (559)
T KOG1155|consen 545 ALLREIR 551 (559)
T ss_pred HHHHHHH
Confidence 4444433
No 47
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.59 E-value=2.5e-11 Score=123.12 Aligned_cols=91 Identities=10% Similarity=0.015 Sum_probs=58.0
Q ss_pred HHhHHHHHHHHHhCCCCHHHHHHHHHhchhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 004470 220 VDSCNLFLSRLSNTCDGLRMVVKSFTEFPELGICWNTASYNIMIHCLCRFGKIKEAHLLLLQMELRGCSPDVVSFSTIIN 299 (751)
Q Consensus 220 ~~~~~~ll~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~ 299 (751)
..-+..++.... .+.++..|.-+-+++...+..|+. ---++.+++-.|++++|..+...-.-. ..|..+......
T Consensus 16 ~~~~~~~~r~~l-~q~~y~~a~f~adkV~~l~~dp~d--~~~~aq~l~~~~~y~ra~~lit~~~le--~~d~~cryL~~~ 90 (611)
T KOG1173|consen 16 LEKYRRLVRDAL-MQHRYKTALFWADKVAGLTNDPAD--IYWLAQVLYLGRQYERAAHLITTYKLE--KRDIACRYLAAK 90 (611)
T ss_pred HHHHHHHHHHHH-HHHhhhHHHHHHHHHHhccCChHH--HHHHHHHHHhhhHHHHHHHHHHHhhhh--hhhHHHHHHHHH
Confidence 334444444333 345667777777777666544433 344667777788888887777653222 146677777777
Q ss_pred HHHhcCCHHHHHHHHH
Q 004470 300 GYCYLGELQRVLKLIE 315 (751)
Q Consensus 300 ~~~~~g~~~~A~~~~~ 315 (751)
.+.+..++++|..++.
T Consensus 91 ~l~~lk~~~~al~vl~ 106 (611)
T KOG1173|consen 91 CLVKLKEWDQALLVLG 106 (611)
T ss_pred HHHHHHHHHHHHHHhc
Confidence 7888888888888777
No 48
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.57 E-value=8.2e-12 Score=117.90 Aligned_cols=292 Identities=14% Similarity=0.079 Sum_probs=215.8
Q ss_pred HhcCChhHHHHHHHHHHhCCCccCHHhHHHHHHHHHhCCCCHHHHHHHHHhchhcCCCc---CHHHHHHHHHHHHhcCCH
Q 004470 196 VEARKLNEARKLFEKLLNYGLVISVDSCNLFLSRLSNTCDGLRMVVKSFTEFPELGICW---NTASYNIMIHCLCRFGKI 272 (751)
Q Consensus 196 ~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~l~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~li~~~~~~g~~ 272 (751)
.-..+.++|.+.|-+|.+. .|..+..+..|+.+++..|..|.|+.+++...+.---+ -..+.-.|..-|++.|-+
T Consensus 46 LLs~Q~dKAvdlF~e~l~~--d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~ 123 (389)
T COG2956 46 LLSNQPDKAVDLFLEMLQE--DPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLL 123 (389)
T ss_pred HhhcCcchHHHHHHHHHhc--CchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhh
Confidence 4467889999999999986 78999999999999999999999999999887752111 133555688889999999
Q ss_pred HHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCc----ccHHHHHHHHHhcCCHHHHHHH
Q 004470 273 KEAHLLLLQMELRGCSPDVVSFSTIINGYCYLGELQRVLKLIEEMQIKGLKPNP----YTYNSVVRLLCKTSKVVEAETI 348 (751)
Q Consensus 273 ~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~----~~~~~li~~~~~~g~~~~A~~~ 348 (751)
|.|+++|..+.+.|. --......|+..|-...+|++|++.-+++.+.|-.+.. ..|..|...+....+++.|..+
T Consensus 124 DRAE~~f~~L~de~e-fa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~ 202 (389)
T COG2956 124 DRAEDIFNQLVDEGE-FAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRAREL 202 (389)
T ss_pred hHHHHHHHHHhcchh-hhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHH
Confidence 999999999887543 23456778999999999999999999999887544332 2244555555567888999999
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 004470 349 LREMMNQGIVPDNVIYTTLIDGFCKMGNVAAAYRLFDEMRGLNIIPDLLTYTAIICGFCLTGKMVEAEKLFHEMLGRGLE 428 (751)
Q Consensus 349 ~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~ 428 (751)
+.+..+.+ +..+.+-..+.+.+...|+++.|.+.++.+.+.++.--..+...|..+|...|+.++.+..+..+.+...
T Consensus 203 l~kAlqa~-~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~- 280 (389)
T COG2956 203 LKKALQAD-KKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNT- 280 (389)
T ss_pred HHHHHhhC-ccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccC-
Confidence 99888874 2344555566778889999999999999998876544456677788899999999999999888887633
Q ss_pred CCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc---CCHHHHHHHHHHHHHc
Q 004470 429 PDEIVYTALIDGYCKAGGMKKAFSLHNNMVHMRLTPNVVTYTALADGLCKS---GELETANELLHEMCRK 495 (751)
Q Consensus 429 p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~---g~~~~A~~l~~~m~~~ 495 (751)
....-..+...-....-.+.|...+.+-+.. .|+...+..++..-... |...+.+.+++.|...
T Consensus 281 -g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r--~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~mvge 347 (389)
T COG2956 281 -GADAELMLADLIELQEGIDAAQAYLTRQLRR--KPTMRGFHRLMDYHLADAEEGRAKESLDLLRDMVGE 347 (389)
T ss_pred -CccHHHHHHHHHHHhhChHHHHHHHHHHHhh--CCcHHHHHHHHHhhhccccccchhhhHHHHHHHHHH
Confidence 3333334444444445566666666555544 47888888888765443 3355555666666543
No 49
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.57 E-value=6.7e-10 Score=114.73 Aligned_cols=453 Identities=15% Similarity=0.113 Sum_probs=305.3
Q ss_pred HhcCChHHHHHHHHHHHcCCCCCchhhhHHHHHHHHHhhhcCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCccC
Q 004470 140 VAAKDLKTAHGLIHDFWAKPNLDASIAFTHFVERLIYTYKDWGSDPHVFDIFFQVLVEARKLNEARKLFEKLLNYGLVIS 219 (751)
Q Consensus 140 ~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~ 219 (751)
...+++.....+++.+++.. |..+.+.-+.+-.+...|+.++|.+..+..++. .+.
T Consensus 18 yE~kQYkkgLK~~~~iL~k~----------------------~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~--d~~ 73 (700)
T KOG1156|consen 18 YETKQYKKGLKLIKQILKKF----------------------PEHGESLAMKGLTLNCLGKKEEAYELVRLGLRN--DLK 73 (700)
T ss_pred HHHHHHHhHHHHHHHHHHhC----------------------CccchhHHhccchhhcccchHHHHHHHHHHhcc--Ccc
Confidence 34566777777777766543 555667777888889999999999999988875 566
Q ss_pred HHhHHHHHHHHHhCCCCHHHHHHHHHhchhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 004470 220 VDSCNLFLSRLSNTCDGLRMVVKSFTEFPELGICWNTASYNIMIHCLCRFGKIKEAHLLLLQMELRGCSPDVVSFSTIIN 299 (751)
Q Consensus 220 ~~~~~~ll~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~ 299 (751)
...|=.+++-+.+...++++|++.|..+...++. |...|.-|.-.-.+.|+++-....-.+..+... .....|..+..
T Consensus 74 S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~~d-N~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~-~~ra~w~~~Av 151 (700)
T KOG1156|consen 74 SHVCWHVLGLLQRSDKKYDEAIKCYRNALKIEKD-NLQILRDLSLLQIQMRDYEGYLETRNQLLQLRP-SQRASWIGFAV 151 (700)
T ss_pred cchhHHHHHHHHhhhhhHHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhh-hhHHHHHHHHH
Confidence 6777788999998889999999999999998766 888888887777888888888877777665422 34567888888
Q ss_pred HHHhcCCHHHHHHHHHHHHHCC-CCCCcccHHHHH------HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 004470 300 GYCYLGELQRVLKLIEEMQIKG-LKPNPYTYNSVV------RLLCKTSKVVEAETILREMMNQGIVPDNVIYTTLIDGFC 372 (751)
Q Consensus 300 ~~~~~g~~~~A~~~~~~m~~~g-~~p~~~~~~~li------~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~ 372 (751)
++.-.|++..|..++++..+.. -.|+...|.-.. ....+.|.+++|.+.+..-... +......-..-...+.
T Consensus 152 s~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~-i~Dkla~~e~ka~l~~ 230 (700)
T KOG1156|consen 152 AQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQ-IVDKLAFEETKADLLM 230 (700)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhH-HHHHHHHhhhHHHHHH
Confidence 8899999999999999998764 245555554332 3455688888888877765543 2212223345567788
Q ss_pred HcCCHHHHHHHHHHHHhCCCCCCHHHHHHH-HHHHHhcCCHHHHH-HHHHHHHHC---CCCCCHHHHHHHHHHHHHcCCh
Q 004470 373 KMGNVAAAYRLFDEMRGLNIIPDLLTYTAI-ICGFCLTGKMVEAE-KLFHEMLGR---GLEPDEIVYTALIDGYCKAGGM 447 (751)
Q Consensus 373 ~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l-i~~~~~~g~~~~A~-~~~~~m~~~---~~~p~~~~~~~li~~~~~~g~~ 447 (751)
+.|++++|..++..+..++ ||...|... ..++.+-.+.-+++ .+|....+. ...|-....+.+ ....-.
T Consensus 231 kl~~lEeA~~~y~~Ll~rn--Pdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e~p~Rlplsvl----~~eel~ 304 (700)
T KOG1156|consen 231 KLGQLEEAVKVYRRLLERN--PDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPRHECPRRLPLSVL----NGEELK 304 (700)
T ss_pred HHhhHHhHHHHHHHHHhhC--chhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcccccchhccHHHh----CcchhH
Confidence 9999999999999999876 565555544 45554444444454 666665543 111111111111 112223
Q ss_pred hHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH----cC----------CCCCH--HHHHHHHHHH
Q 004470 448 KKAFSLHNNMVHMRLTPNVVTYTALADGLCKSGELETANELLHEMCR----KG----------LQLNI--YTYNSIVNGL 511 (751)
Q Consensus 448 ~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~----~g----------~~~~~--~~~~~li~~~ 511 (751)
+..-.++..+.+.|+++ ++..+...|-.....+-..++.-.+.. .| -+|.. .++..++..+
T Consensus 305 ~~vdkyL~~~l~Kg~p~---vf~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~ 381 (700)
T KOG1156|consen 305 EIVDKYLRPLLSKGVPS---VFKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHY 381 (700)
T ss_pred HHHHHHHHHHhhcCCCc---hhhhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHH
Confidence 34445666677777653 233333333222222211112111111 11 13444 3556778889
Q ss_pred HHcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHH
Q 004470 512 CKAGNILQAVKLMEDMEVAGFHPD-TFTYTTIMDAYCKSGEMVKAHELLRDMLDKGLQPSVVTFNVLMNGFCMSGMIEDG 590 (751)
Q Consensus 512 ~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A 590 (751)
-+.|+++.|...++..... .|+ +..|..-.+.+...|++++|..++++..+.+ .+|...-.--+.-..++++.++|
T Consensus 382 D~~g~~~~A~~yId~AIdH--TPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD-~aDR~INsKcAKYmLrAn~i~eA 458 (700)
T KOG1156|consen 382 DKLGDYEVALEYIDLAIDH--TPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELD-TADRAINSKCAKYMLRANEIEEA 458 (700)
T ss_pred HHcccHHHHHHHHHHHhcc--CchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcc-chhHHHHHHHHHHHHHccccHHH
Confidence 9999999999999999875 565 4566677788999999999999999999875 55665555566667789999999
Q ss_pred HHHHHHHHHcCCCCCHhhH--------HHH--HHHHHHcCCHHHHHHHHHHHH
Q 004470 591 EKLLKWMLEKGLKPNAATY--------NPL--IKQHCLRNDMRTTAKIYKGMC 633 (751)
Q Consensus 591 ~~l~~~~~~~g~~p~~~~~--------~~l--~~~~~~~g~~~~A~~~~~~m~ 633 (751)
.++.......|. +...+ -.+ ..+|.+.|++..|++-|..+.
T Consensus 459 ~~~~skFTr~~~--~~~~~L~~mqcmWf~~E~g~ay~r~~k~g~ALKkfh~i~ 509 (700)
T KOG1156|consen 459 EEVLSKFTREGF--GAVNNLAEMQCMWFQLEDGEAYLRQNKLGLALKKFHEIE 509 (700)
T ss_pred HHHHHHhhhccc--chhhhHHHhhhHHHhHhhhHHHHHHHHHHHHHHHHhhHH
Confidence 999999988764 32222 111 345777777777776555443
No 50
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.56 E-value=2e-14 Score=145.18 Aligned_cols=261 Identities=16% Similarity=0.128 Sum_probs=93.6
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHhCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHc
Q 004470 436 ALIDGYCKAGGMKKAFSLHNNMVHMR-LTPNVVTYTALADGLCKSGELETANELLHEMCRKGLQLNIYTYNSIVNGLCKA 514 (751)
Q Consensus 436 ~li~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~~~~li~~~~~~ 514 (751)
.+...+.+.|++++|++++++..... .+.+...|..+.......++.+.|.+.++++...+.. ++..+..++.. ...
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~ 90 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQD 90 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc-ccc
Confidence 34556666777777777775443332 2234444555555666667777777777777665433 44555555555 567
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC-CCCCHHHHHHHHHHHHhcCChhHHHHH
Q 004470 515 GNILQAVKLMEDMEVAGFHPDTFTYTTIMDAYCKSGEMVKAHELLRDMLDKG-LQPSVVTFNVLMNGFCMSGMIEDGEKL 593 (751)
Q Consensus 515 g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~-~~p~~~~~~~li~~~~~~g~~~~A~~l 593 (751)
+++++|.+++....+. .++...+..++..+.+.++++++.++++.+.... .+.+...|..+...+.+.|+.++|++.
T Consensus 91 ~~~~~A~~~~~~~~~~--~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~ 168 (280)
T PF13429_consen 91 GDPEEALKLAEKAYER--DGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRD 168 (280)
T ss_dssp -----------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHH
T ss_pred cccccccccccccccc--ccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 7777777777665544 3455566667777777777777777777765432 245666677777777777777777777
Q ss_pred HHHHHHcCCCC-CHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 004470 594 LKWMLEKGLKP-NAATYNPLIKQHCLRNDMRTTAKIYKGMCAQGITPDGNTYNILLQGHCKARNMKEAWFLHKEMVQKGF 672 (751)
Q Consensus 594 ~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~ 672 (751)
+++.++. .| |......++..+...|+.+++.++++...+.. +.|+..+..+..+|...|+.++|+..+++.....+
T Consensus 169 ~~~al~~--~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p 245 (280)
T PF13429_consen 169 YRKALEL--DPDDPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNP 245 (280)
T ss_dssp HHHHHHH---TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHST
T ss_pred HHHHHHc--CCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhccccccccccccccccccccc
Confidence 7777775 33 45666777777777777777777777766642 34555666777778888888888888888777644
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004470 673 NLTTSSYNALIKGFLKRKKYLEARELFEEMRR 704 (751)
Q Consensus 673 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 704 (751)
. |+.+...+++++...|+.++|..+.+++.+
T Consensus 246 ~-d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 246 D-DPLWLLAYADALEQAGRKDEALRLRRQALR 276 (280)
T ss_dssp T--HHHHHHHHHHHT-----------------
T ss_pred c-cccccccccccccccccccccccccccccc
Confidence 4 777777888888888888888877776654
No 51
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.56 E-value=1.9e-10 Score=116.85 Aligned_cols=503 Identities=11% Similarity=0.021 Sum_probs=313.6
Q ss_pred hhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCccCHHhHHHHHHHHHhCCCCHHHHHHHHHhchhcCCCcCHHHHHHHHH
Q 004470 185 PHVFDIFFQVLVEARKLNEARKLFEKLLNYGLVISVDSCNLFLSRLSNTCDGLRMVVKSFTEFPELGICWNTASYNIMIH 264 (751)
Q Consensus 185 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 264 (751)
..-+..+.+-+..+.++.-|+-+-+++...+-.|+..-+ +...++ -.|+++.|......-.-. .-|..+......
T Consensus 16 ~~~~~~~~r~~l~q~~y~~a~f~adkV~~l~~dp~d~~~--~aq~l~-~~~~y~ra~~lit~~~le--~~d~~cryL~~~ 90 (611)
T KOG1173|consen 16 LEKYRRLVRDALMQHRYKTALFWADKVAGLTNDPADIYW--LAQVLY-LGRQYERAAHLITTYKLE--KRDIACRYLAAK 90 (611)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHhccCChHHHHH--HHHHHH-hhhHHHHHHHHHHHhhhh--hhhHHHHHHHHH
Confidence 345666777888899999999999999877666665433 334443 457777777666544222 227778888889
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCHHH
Q 004470 265 CLCRFGKIKEAHLLLLQMELRGCSPDVVSFSTIINGYCYLGELQRVLKLIEEMQIKGLKPNPYTYNSVVRLLCKTSKVVE 344 (751)
Q Consensus 265 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~ 344 (751)
++.+..++++|..++..-.. .-+...|-.-=. ...-..+.+. ++. +.......+-.-...|....+.++
T Consensus 91 ~l~~lk~~~~al~vl~~~~~---~~~~f~yy~~~~--~~~l~~n~~~----~~~--~~~~essic~lRgk~y~al~n~~~ 159 (611)
T KOG1173|consen 91 CLVKLKEWDQALLVLGRGHV---ETNPFSYYEKDA--ANTLELNSAG----EDL--MINLESSICYLRGKVYVALDNREE 159 (611)
T ss_pred HHHHHHHHHHHHHHhcccch---hhcchhhcchhh--hceeccCccc----ccc--cccchhceeeeeeehhhhhccHHH
Confidence 99999999999998874311 111111110000 0000111111 010 011112222222344555667788
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCC----CCHHHHHHHHHHH-HhcCCHHHHHHHH
Q 004470 345 AETILREMMNQGIVPDNVIYTTLIDGFCKMGNVAAAYRLFDEMRGLNII----PDLLTYTAIICGF-CLTGKMVEAEKLF 419 (751)
Q Consensus 345 A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~----p~~~~~~~li~~~-~~~g~~~~A~~~~ 419 (751)
|...+.+.+.. |...+..+...-.. .+-.+.+.++.+...... -+......+.... ++.-+- +....-
T Consensus 160 ar~~Y~~Al~~----D~~c~Ea~~~lvs~--~mlt~~Ee~~ll~~l~~a~~~~ed~e~l~~lyel~~~k~~n~-~~~~r~ 232 (611)
T KOG1173|consen 160 ARDKYKEALLA----DAKCFEAFEKLVSA--HMLTAQEEFELLESLDLAMLTKEDVERLEILYELKLCKNRNE-ESLTRN 232 (611)
T ss_pred HHHHHHHHHhc----chhhHHHHHHHHHH--HhcchhHHHHHHhcccHHhhhhhHHHHHHHHHHhhhhhhccc-cccccC
Confidence 88888777765 33333332221111 112222223333221110 0111111111111 111000 000000
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC
Q 004470 420 HEMLGRGLEPDEIVYTALIDGYCKAGGMKKAFSLHNNMVHMRLTPNVVTYTALADGLCKSGELETANELLHEMCRKGLQL 499 (751)
Q Consensus 420 ~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~ 499 (751)
.+..-.+..-+........+-+...+++.+..++.+...+.. +++...+..-|.++...|+..+-..+=.++++.- +-
T Consensus 233 ~~~sl~~l~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~y-P~ 310 (611)
T KOG1173|consen 233 EDESLIGLAENLDLLAEKADRLYYGCRFKECLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLY-PS 310 (611)
T ss_pred chhhhhhhhhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHHHhC-CC
Confidence 001111234455666667777788889999999999888764 3466667777778888888888888888888763 33
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 004470 500 NIYTYNSIVNGLCKAGNILQAVKLMEDMEVAGFHPDTFTYTTIMDAYCKSGEMVKAHELLRDMLDKGLQPSVVTFNVLMN 579 (751)
Q Consensus 500 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~ 579 (751)
.+.+|-++.--|...|+..+|.+.|.+....+ +.=...|-.+..+|+-.|..|+|...+..+.+. ++-...-+-.+.-
T Consensus 311 ~a~sW~aVg~YYl~i~k~seARry~SKat~lD-~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl-~~G~hlP~LYlgm 388 (611)
T KOG1173|consen 311 KALSWFAVGCYYLMIGKYSEARRYFSKATTLD-PTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARL-MPGCHLPSLYLGM 388 (611)
T ss_pred CCcchhhHHHHHHHhcCcHHHHHHHHHHhhcC-ccccHHHHHHhHHhhhcchHHHHHHHHHHHHHh-ccCCcchHHHHHH
Confidence 67788888888888899999999998887654 334567888888888899999998888877653 2222233344455
Q ss_pred HHHhcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHC--CCCC----CHHHHHHHHHHHHh
Q 004470 580 GFCMSGMIEDGEKLLKWMLEKGLKPNAATYNPLIKQHCLRNDMRTTAKIYKGMCAQ--GITP----DGNTYNILLQGHCK 653 (751)
Q Consensus 580 ~~~~~g~~~~A~~l~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~--g~~p----~~~~~~~li~~~~~ 653 (751)
-|.+.++.+-|.+.|.+..... +.|+..++-+.-.....+.+.+|..+|+..+.. .+.+ -..+++.|.+.|.+
T Consensus 389 ey~~t~n~kLAe~Ff~~A~ai~-P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rk 467 (611)
T KOG1173|consen 389 EYMRTNNLKLAEKFFKQALAIA-PSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRK 467 (611)
T ss_pred HHHHhccHHHHHHHHHHHHhcC-CCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHH
Confidence 6778889999999998887652 336677777777777888899999998887731 1111 23457888999999
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 004470 654 ARNMKEAWFLHKEMVQKGFNLTTSSYNALIKGFLKRKKYLEARELFEEMRRGGLVADREIYYFFV 718 (751)
Q Consensus 654 ~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 718 (751)
.+.+++|+..+++.+...+. +..++.+++-.|...|+++.|++.|.+.+- +.||..+...++
T Consensus 468 l~~~~eAI~~~q~aL~l~~k-~~~~~asig~iy~llgnld~Aid~fhKaL~--l~p~n~~~~~lL 529 (611)
T KOG1173|consen 468 LNKYEEAIDYYQKALLLSPK-DASTHASIGYIYHLLGNLDKAIDHFHKALA--LKPDNIFISELL 529 (611)
T ss_pred HhhHHHHHHHHHHHHHcCCC-chhHHHHHHHHHHHhcChHHHHHHHHHHHh--cCCccHHHHHHH
Confidence 99999999999999988655 888999999999999999999999999886 466665544444
No 52
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.56 E-value=4.9e-11 Score=116.49 Aligned_cols=299 Identities=13% Similarity=0.054 Sum_probs=179.6
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 004470 409 TGKMVEAEKLFHEMLGRGLEPDEIVYTALIDGYCKAGGMKKAFSLHNNMVHMRLTPNVVTYTALADGLCKSGELETANEL 488 (751)
Q Consensus 409 ~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l 488 (751)
.|++.+|+++..+..+.+-. ....|..-+.+--..|+.+.+-.++.++.+.-..++...+-+........|+++.|..-
T Consensus 97 eG~~~qAEkl~~rnae~~e~-p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~ 175 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQ-PVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAAREN 175 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcc-hHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHH
Confidence 46666666666655544322 23334444455555566666666666655543344455555555555556666666655
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCC
Q 004470 489 LHEMCRKGLQLNIYTYNSIVNGLCKAGNILQAVKLMEDMEVAGFHPDTFTYTTIMDAYCKSGEMVKAHELLRDMLDKGLQ 568 (751)
Q Consensus 489 ~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~ 568 (751)
++++.+.+.. ++........+|.+.|++.+...++..+.+.|.-.+...-..
T Consensus 176 v~~ll~~~pr-~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~l--------------------------- 227 (400)
T COG3071 176 VDQLLEMTPR-HPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARL--------------------------- 227 (400)
T ss_pred HHHHHHhCcC-ChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHH---------------------------
Confidence 5555555433 444555555555555555555555555555553322211000
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 004470 569 PSVVTFNVLMNGFCMSGMIEDGEKLLKWMLEKGLKPNAATYNPLIKQHCLRNDMRTTAKIYKGMCAQGITPDGNTYNILL 648 (751)
Q Consensus 569 p~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li 648 (751)
...+|+.+++-....+..+.-...|+..-.+ .+-++..-.+++.-+...|+.++|.++.++..+.+..|+.. ..
T Consensus 228 -e~~a~~glL~q~~~~~~~~gL~~~W~~~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L~----~~ 301 (400)
T COG3071 228 -EQQAWEGLLQQARDDNGSEGLKTWWKNQPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRLC----RL 301 (400)
T ss_pred -HHHHHHHHHHHHhccccchHHHHHHHhccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhHH----HH
Confidence 0123444444333333333333344443332 34455566677777778888888888888888776555521 12
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChh
Q 004470 649 QGHCKARNMKEAWFLHKEMVQKGFNLTTSSYNALIKGFLKRKKYLEARELFEEMRRGGLVADREIYYFFVDINFEEGNTE 728 (751)
Q Consensus 649 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 728 (751)
-.+.+-++...-++..++.....+. ++..+.+|+..|.+.+.|.+|.+.|+.+++. .|+..+|..+++++.+.|+.+
T Consensus 302 ~~~l~~~d~~~l~k~~e~~l~~h~~-~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~--~~s~~~~~~la~~~~~~g~~~ 378 (400)
T COG3071 302 IPRLRPGDPEPLIKAAEKWLKQHPE-DPLLLSTLGRLALKNKLWGKASEALEAALKL--RPSASDYAELADALDQLGEPE 378 (400)
T ss_pred HhhcCCCCchHHHHHHHHHHHhCCC-ChhHHHHHHHHHHHhhHHHHHHHHHHHHHhc--CCChhhHHHHHHHHHHcCChH
Confidence 3345667777777777777766433 6788888888888888888888888877764 688888888888888888888
Q ss_pred HHHHHHHHHHHcCCCCC
Q 004470 729 ITLELCDAAIECYLVGK 745 (751)
Q Consensus 729 ~A~~~~~~~~~~~~~~~ 745 (751)
+|.+..++.+-....|.
T Consensus 379 ~A~~~r~e~L~~~~~~~ 395 (400)
T COG3071 379 EAEQVRREALLLTRQPN 395 (400)
T ss_pred HHHHHHHHHHHHhcCCC
Confidence 88888888875554444
No 53
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.54 E-value=2.8e-12 Score=132.79 Aligned_cols=284 Identities=12% Similarity=0.003 Sum_probs=155.4
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCC--CCCHHHHHHHHHHHHhcCCHHHHHHH
Q 004470 411 KMVEAEKLFHEMLGRGLEPDEIVYTALIDGYCKAGGMKKAFSLHNNMVHMRL--TPNVVTYTALADGLCKSGELETANEL 488 (751)
Q Consensus 411 ~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~l 488 (751)
+..+|+..|..+... ..-...+...+..+|...+++++|.++|+.+.+..+ .-+..+|.+.+--+-+.- +---+
T Consensus 334 ~~~~A~~~~~klp~h-~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v---~Ls~L 409 (638)
T KOG1126|consen 334 NCREALNLFEKLPSH-HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEV---ALSYL 409 (638)
T ss_pred HHHHHHHHHHhhHHh-cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhH---HHHHH
Confidence 567777777774444 333346666777788888888888888877776531 125556666654432211 11122
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCC
Q 004470 489 LHEMCRKGLQLNIYTYNSIVNGLCKAGNILQAVKLMEDMEVAGFHPDTFTYTTIMDAYCKSGEMVKAHELLRDMLDKGLQ 568 (751)
Q Consensus 489 ~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~ 568 (751)
-+++.+.. +-.+.+|.++.++|.-+++.+.|++.|++....+ +....+|+.+..-+....++|.|...|+..+... +
T Consensus 410 aq~Li~~~-~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQld-p~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~-~ 486 (638)
T KOG1126|consen 410 AQDLIDTD-PNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLD-PRFAYAYTLLGHESIATEEFDKAMKSFRKALGVD-P 486 (638)
T ss_pred HHHHHhhC-CCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccC-CccchhhhhcCChhhhhHHHHhHHHHHHhhhcCC-c
Confidence 23333332 2355667777777777777777777777666553 3356666666666666666666666666665432 1
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 004470 569 PSVVTFNVLMNGFCMSGMIEDGEKLLKWMLEKGLKPNAATYNPLIKQHCLRNDMRTTAKIYKGMCAQGITPDGNTYNILL 648 (751)
Q Consensus 569 p~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li 648 (751)
-+..+|..+.-.|.+.++++.|+-.|+++.+.+.. +.+....+...+-+.|+.++|+++++++...+. -|+..--..+
T Consensus 487 rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~-nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~-kn~l~~~~~~ 564 (638)
T KOG1126|consen 487 RHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPS-NSVILCHIGRIQHQLKRKDKALQLYEKAIHLDP-KNPLCKYHRA 564 (638)
T ss_pred hhhHHHHhhhhheeccchhhHHHHHHHhhhcCCcc-chhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCC-CCchhHHHHH
Confidence 23334444555566666666666666666654322 334444444555555555555555555554321 1333322334
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004470 649 QGHCKARNMKEAWFLHKEMVQKGFNLTTSSYNALIKGFLKRKKYLEARELFEEMRR 704 (751)
Q Consensus 649 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 704 (751)
..+...+++++|+..++++++.-++ +...+..++..|-+.|+.+.|+..|.-|.+
T Consensus 565 ~il~~~~~~~eal~~LEeLk~~vP~-es~v~~llgki~k~~~~~~~Al~~f~~A~~ 619 (638)
T KOG1126|consen 565 SILFSLGRYVEALQELEELKELVPQ-ESSVFALLGKIYKRLGNTDLALLHFSWALD 619 (638)
T ss_pred HHHHhhcchHHHHHHHHHHHHhCcc-hHHHHHHHHHHHHHHccchHHHHhhHHHhc
Confidence 4444455555555555555544222 344455555555555555555555555554
No 54
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.54 E-value=3.4e-09 Score=111.86 Aligned_cols=495 Identities=12% Similarity=0.064 Sum_probs=315.7
Q ss_pred HHHHhCCCCHHHHHHHHHhchhcCCCcCHHHHHHHHH---HHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhc
Q 004470 228 SRLSNTCDGLRMVVKSFTEFPELGICWNTASYNIMIH---CLCRFGKIKEAHLLLLQMELRGCSPDVVSFSTIINGYCYL 304 (751)
Q Consensus 228 ~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~---~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~ 304 (751)
..+++..++..++...|......+...++.++-.+-. .|+..|+.+++ .++..+.+ -..|....+.+++..
T Consensus 234 ~~Lw~~~~~~~~~i~s~~~~l~~~w~~~~l~ka~l~~~~~~f~~~~~~Ee~-~Lllli~e-s~i~Re~~~d~ilsl---- 307 (799)
T KOG4162|consen 234 PILWKKLSGPKEAIKSYRRALLRSWSLDPLTKARLYKGFALFLPKSGQEEV-ILLLLIEE-SLIPRENIEDAILSL---- 307 (799)
T ss_pred HHHhcCCCCchHHHHhhhHHhhcccccchhHHHHHhhcccccCCCCcHHHH-HHHHHHHh-hccccccHHHHHHHH----
Confidence 4555566777888888888877777666666655543 34556677666 22222222 122222222211111
Q ss_pred CCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 004470 305 GELQRVLKLIEEMQIKGLKPNPYTYNSVVRLLCKTSKVVEAETILREMMNQGIVPDNVIYTTLIDGFCKMGNVAAAYRLF 384 (751)
Q Consensus 305 g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~ 384 (751)
.-.+.++....+.-|...|..|.-++...|+++.+.+.|++....- .-....|+.+...|...|.-..|..++
T Consensus 308 ------m~~~~k~r~~~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~-~~~~e~w~~~als~saag~~s~Av~ll 380 (799)
T KOG4162|consen 308 ------MLLLRKLRLKKFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFS-FGEHERWYQLALSYSAAGSDSKAVNLL 380 (799)
T ss_pred ------HHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhh-hhhHHHHHHHHHHHHHhccchHHHHHH
Confidence 1122223333344577778888888889999999999999887653 335667888889999999999999999
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHH--hcCCHHHHHHHHHHHHHC--CC--CCCHHHHHHHHHHHHHcC-----------Ch
Q 004470 385 DEMRGLNIIPDLLTYTAIICGFC--LTGKMVEAEKLFHEMLGR--GL--EPDEIVYTALIDGYCKAG-----------GM 447 (751)
Q Consensus 385 ~~m~~~~~~p~~~~~~~li~~~~--~~g~~~~A~~~~~~m~~~--~~--~p~~~~~~~li~~~~~~g-----------~~ 447 (751)
++-......|+..+--.++...| +.|.++++++.-.+.+.. +. ......|-.+.-+|...- ..
T Consensus 381 ~~~~~~~~~ps~~s~~Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h 460 (799)
T KOG4162|consen 381 RESLKKSEQPSDISVLLMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALH 460 (799)
T ss_pred HhhcccccCCCcchHHHHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHH
Confidence 88776654454444444443333 447788888877777662 11 112344444444443211 24
Q ss_pred hHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 004470 448 KKAFSLHNNMVHMRLTPNVVTYTALADGLCKSGELETANELLHEMCRKGLQLNIYTYNSIVNGLCKAGNILQAVKLMEDM 527 (751)
Q Consensus 448 ~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 527 (751)
.++.+.+++..+.+.. |+.+...+.--|+..++++.|.+..++..+.+..-+...|..+.-.+...+++.+|+.+.+..
T Consensus 461 ~kslqale~av~~d~~-dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~a 539 (799)
T KOG4162|consen 461 KKSLQALEEAVQFDPT-DPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAA 539 (799)
T ss_pred HHHHHHHHHHHhcCCC-CchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHH
Confidence 5677788888776543 434444444557778899999999999998877778889999999999999999999999887
Q ss_pred HHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC----------------------------CCCCCHHHHHHHHH
Q 004470 528 EVAGFHPDTFTYTTIMDAYCKSGEMVKAHELLRDMLDK----------------------------GLQPSVVTFNVLMN 579 (751)
Q Consensus 528 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----------------------------~~~p~~~~~~~li~ 579 (751)
.+.- ..|......-+..-..-++.++|......+... .......++..+..
T Consensus 540 l~E~-~~N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~ 618 (799)
T KOG4162|consen 540 LEEF-GDNHVLMDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSS 618 (799)
T ss_pred HHHh-hhhhhhchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHH
Confidence 6531 111111111112222244444444433332210 00111222322222
Q ss_pred HHHhcCChhHHHHHHHHHHHcC--CCCCH------hhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 004470 580 GFCMSGMIEDGEKLLKWMLEKG--LKPNA------ATYNPLIKQHCLRNDMRTTAKIYKGMCAQGITPDGNTYNILLQGH 651 (751)
Q Consensus 580 ~~~~~g~~~~A~~l~~~~~~~g--~~p~~------~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~ 651 (751)
-....+ +.+..-.. +...- ..|+. ..|......+.+.++.++|.-.+.+..... +-....|......+
T Consensus 619 l~a~~~--~~~~se~~-Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~-~l~~~~~~~~G~~~ 694 (799)
T KOG4162|consen 619 LVASQL--KSAGSELK-LPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKID-PLSASVYYLRGLLL 694 (799)
T ss_pred HHHhhh--hhcccccc-cCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcc-hhhHHHHHHhhHHH
Confidence 111110 00000000 11111 12231 234455666788899999998888887642 33566788888888
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH--HHHHHHHCCCCCCHHHHHHHHHHHHhcCChhH
Q 004470 652 CKARNMKEAWFLHKEMVQKGFNLTTSSYNALIKGFLKRKKYLEARE--LFEEMRRGGLVADREIYYFFVDINFEEGNTEI 729 (751)
Q Consensus 652 ~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~--~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 729 (751)
...|.+++|.+.|..+...++. ++.+...++..+.+.|+..-|.. ++..+++.+ +.+++.|..++..+.+.|+.+.
T Consensus 695 ~~~~~~~EA~~af~~Al~ldP~-hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~d-p~n~eaW~~LG~v~k~~Gd~~~ 772 (799)
T KOG4162|consen 695 EVKGQLEEAKEAFLVALALDPD-HVPSMTALAELLLELGSPRLAEKRSLLSDALRLD-PLNHEAWYYLGEVFKKLGDSKQ 772 (799)
T ss_pred HHHHhhHHHHHHHHHHHhcCCC-CcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHccchHH
Confidence 9999999999999999988765 67789999999999998877777 999999987 7799999999999999999999
Q ss_pred HHHHHHHHHHcCCC
Q 004470 730 TLELCDAAIECYLV 743 (751)
Q Consensus 730 A~~~~~~~~~~~~~ 743 (751)
|.+-|+.+++....
T Consensus 773 Aaecf~aa~qLe~S 786 (799)
T KOG4162|consen 773 AAECFQAALQLEES 786 (799)
T ss_pred HHHHHHHHHhhccC
Confidence 99999999887644
No 55
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.53 E-value=4.3e-11 Score=113.15 Aligned_cols=306 Identities=13% Similarity=0.093 Sum_probs=187.7
Q ss_pred CCchhHHHHHHHhhcCChHHHHHHHHhhhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHcCCCCCchhhhHHHHHH
Q 004470 94 KFRSDHLIWVLMDIRSDYRLVLDFFDWACLRREPILEARCIVVQISVAAKDLKTAHGLIHDFWAKPNLDASIAFTHFVER 173 (751)
Q Consensus 94 ~~~~~~~~~~l~~~~~~~~~al~~f~~~~~~~~~~~~~~~~~~~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~ 173 (751)
+++.+.|-.+-.-+.++|+.|.+.|--+...++.+++++..++++.-..|..+.|+++...++..++....
T Consensus 34 ~lsr~Yv~GlNfLLs~Q~dKAvdlF~e~l~~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~--------- 104 (389)
T COG2956 34 RLSRDYVKGLNFLLSNQPDKAVDLFLEMLQEDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFE--------- 104 (389)
T ss_pred hccHHHHhHHHHHhhcCcchHHHHHHHHHhcCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchH---------
Confidence 35567777777777899999999999999999999999999999999999999999999999887632111
Q ss_pred HHHhhhcCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCccCHHhHHHHHHHHHhCCCCHHHHHHHHHhchhcCCC
Q 004470 174 LIYTYKDWGSDPHVFDIFFQVLVEARKLNEARKLFEKLLNYGLVISVDSCNLFLSRLSNTCDGLRMVVKSFTEFPELGIC 253 (751)
Q Consensus 174 l~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~l~~~~~~~~~a~~~~~~~~~~~~~ 253 (751)
....+...|++-|...|-+|.|.++|..+...|.. -...... |-.++....+|++|+.+-++....+..
T Consensus 105 ---------qr~lAl~qL~~Dym~aGl~DRAE~~f~~L~de~ef-a~~Alqq-Ll~IYQ~treW~KAId~A~~L~k~~~q 173 (389)
T COG2956 105 ---------QRLLALQQLGRDYMAAGLLDRAEDIFNQLVDEGEF-AEGALQQ-LLNIYQATREWEKAIDVAERLVKLGGQ 173 (389)
T ss_pred ---------HHHHHHHHHHHHHHHhhhhhHHHHHHHHHhcchhh-hHHHHHH-HHHHHHHhhHHHHHHHHHHHHHHcCCc
Confidence 11235677999999999999999999999875311 1112222 333444567777777777777666554
Q ss_pred cCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccH
Q 004470 254 WNT----ASYNIMIHCLCRFGKIKEAHLLLLQMELRGCSPDVVSFSTIINGYCYLGELQRVLKLIEEMQIKGLKPNPYTY 329 (751)
Q Consensus 254 ~~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~ 329 (751)
+.. .-|..|...+....++++|..++.+..+.+. ..+..--.+.+.....|+++.|.+.++...+.+..--..+.
T Consensus 174 ~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~-~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl 252 (389)
T COG2956 174 TYRVEIAQFYCELAQQALASSDVDRARELLKKALQADK-KCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVL 252 (389)
T ss_pred cchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCc-cceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHH
Confidence 332 2344455555556666666666666655432 12333334445566666666666666666665433334445
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh-
Q 004470 330 NSVVRLLCKTSKVVEAETILREMMNQGIVPDNVIYTTLIDGFCKMGNVAAAYRLFDEMRGLNIIPDLLTYTAIICGFCL- 408 (751)
Q Consensus 330 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~- 408 (751)
..|..+|...|+.++....+..+.+.. +....-..+.+.-....-.+.|...+.+-..+ .|+...+..+|.....
T Consensus 253 ~~L~~~Y~~lg~~~~~~~fL~~~~~~~--~g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r--~Pt~~gf~rl~~~~l~d 328 (389)
T COG2956 253 EMLYECYAQLGKPAEGLNFLRRAMETN--TGADAELMLADLIELQEGIDAAQAYLTRQLRR--KPTMRGFHRLMDYHLAD 328 (389)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHcc--CCccHHHHHHHHHHHhhChHHHHHHHHHHHhh--CCcHHHHHHHHHhhhcc
Confidence 556666666666666666666665542 23333333333333333344444443333332 2566666666554432
Q ss_pred --cCCHHHHHHHHHHHHH
Q 004470 409 --TGKMVEAEKLFHEMLG 424 (751)
Q Consensus 409 --~g~~~~A~~~~~~m~~ 424 (751)
.|...+.+.+++.|+.
T Consensus 329 aeeg~~k~sL~~lr~mvg 346 (389)
T COG2956 329 AEEGRAKESLDLLRDMVG 346 (389)
T ss_pred ccccchhhhHHHHHHHHH
Confidence 2334444445555543
No 56
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.52 E-value=4.1e-12 Score=131.56 Aligned_cols=289 Identities=10% Similarity=0.090 Sum_probs=174.6
Q ss_pred ChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHHHHcCCHHHHHHH
Q 004470 446 GMKKAFSLHNNMVHMRLTPNVVTYTALADGLCKSGELETANELLHEMCRKGL--QLNIYTYNSIVNGLCKAGNILQAVKL 523 (751)
Q Consensus 446 ~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~--~~~~~~~~~li~~~~~~g~~~~A~~~ 523 (751)
+..+|...|....... .-...+...+..+|...+++++|.++|+.+.+... .-+...|.+.+-.+-+ .-+--.+
T Consensus 334 ~~~~A~~~~~klp~h~-~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~---~v~Ls~L 409 (638)
T KOG1126|consen 334 NCREALNLFEKLPSHH-YNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQD---EVALSYL 409 (638)
T ss_pred HHHHHHHHHHhhHHhc-CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHh---hHHHHHH
Confidence 3456666666644332 22334555666777777777777777777765421 1144556655543322 1111122
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCC
Q 004470 524 MEDMEVAGFHPDTFTYTTIMDAYCKSGEMVKAHELLRDMLDKGLQPSVVTFNVLMNGFCMSGMIEDGEKLLKWMLEKGLK 603 (751)
Q Consensus 524 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~g~~ 603 (751)
-+++.... +..+.+|-++..+|.-+++.+.|++.|++.++.+ +....+|+.+..-+.....+|.|...|+..+....+
T Consensus 410 aq~Li~~~-~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQld-p~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~r 487 (638)
T KOG1126|consen 410 AQDLIDTD-PNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLD-PRFAYAYTLLGHESIATEEFDKAMKSFRKALGVDPR 487 (638)
T ss_pred HHHHHhhC-CCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccC-CccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCch
Confidence 22333332 4556777777777777777777777777776653 225666777766666777777777777766543111
Q ss_pred CCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 004470 604 PNAATYNPLIKQHCLRNDMRTTAKIYKGMCAQGITP-DGNTYNILLQGHCKARNMKEAWFLHKEMVQKGFNLTTSSYNAL 682 (751)
Q Consensus 604 p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l 682 (751)
+.-.|-.+.-.|.++++++.|.-.|+++++. .| +.+....+...+-+.|+.|+|+.+++++...+++ |+..--..
T Consensus 488 -hYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~I--NP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~k-n~l~~~~~ 563 (638)
T KOG1126|consen 488 -HYNAWYGLGTVYLKQEKLEFAEFHFQKAVEI--NPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPK-NPLCKYHR 563 (638)
T ss_pred -hhHHHHhhhhheeccchhhHHHHHHHhhhcC--CccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCC-CchhHHHH
Confidence 2233444555677777777777777777663 33 4555556666667777777777777777766655 55555556
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC
Q 004470 683 IKGFLKRKKYLEARELFEEMRRGGLVADREIYYFFVDINFEEGNTEITLELCDAAIECYLVGK 745 (751)
Q Consensus 683 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 745 (751)
+..+...+++++|+..++++.+. .+.+..++..++..|.+.|+.+.|+..|.=|.+....+.
T Consensus 564 ~~il~~~~~~~eal~~LEeLk~~-vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpkg~ 625 (638)
T KOG1126|consen 564 ASILFSLGRYVEALQELEELKEL-VPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDPKGA 625 (638)
T ss_pred HHHHHhhcchHHHHHHHHHHHHh-CcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCccc
Confidence 66666677777777777777664 244556666667777777777777777776666655543
No 57
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.52 E-value=6.5e-10 Score=106.22 Aligned_cols=491 Identities=12% Similarity=0.074 Sum_probs=235.3
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCCCccCHHhHHHHHHHHHhCCCCHHHHHHHHHhchhcCCCcCHHHHHHHHHHHHhcCC
Q 004470 192 FQVLVEARKLNEARKLFEKLLNYGLVISVDSCNLFLSRLSNTCDGLRMVVKSFTEFPELGICWNTASYNIMIHCLCRFGK 271 (751)
Q Consensus 192 ~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 271 (751)
..-+....++..|+.+++.-...+ .-.....+.-++-+....|++++|..+|..+.... .++...+--|.-.+.-.|.
T Consensus 29 Ledfls~rDytGAislLefk~~~~-~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~-~~~~el~vnLAcc~FyLg~ 106 (557)
T KOG3785|consen 29 LEDFLSNRDYTGAISLLEFKLNLD-REEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKD-DAPAELGVNLACCKFYLGQ 106 (557)
T ss_pred HHHHHhcccchhHHHHHHHhhccc-hhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccC-CCCcccchhHHHHHHHHHH
Confidence 344556666777777666555433 11222445555555556666666666666655532 2344444445555555566
Q ss_pred HHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHH
Q 004470 272 IKEAHLLLLQMELRGCSPDVVSFSTIINGYCYLGELQRVLKLIEEMQIKGLKPNPYTYNSVVRLLCKTSKVVEAETILRE 351 (751)
Q Consensus 272 ~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 351 (751)
+.+|..+-....+ +.-.-..|++.--+.++-++-..+.+.+... ...--+|.......-.+.+|++++..
T Consensus 107 Y~eA~~~~~ka~k-----~pL~~RLlfhlahklndEk~~~~fh~~LqD~-----~EdqLSLAsvhYmR~HYQeAIdvYkr 176 (557)
T KOG3785|consen 107 YIEAKSIAEKAPK-----TPLCIRLLFHLAHKLNDEKRILTFHSSLQDT-----LEDQLSLASVHYMRMHYQEAIDVYKR 176 (557)
T ss_pred HHHHHHHHhhCCC-----ChHHHHHHHHHHHHhCcHHHHHHHHHHHhhh-----HHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 6666655433221 2222233444444556655555555544332 12223333343444456666666666
Q ss_pred HHHCCCCCCHHHHHHHH-HHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 004470 352 MMNQGIVPDNVIYTTLI-DGFCKMGNVAAAYRLFDEMRGLNIIPDLLTYTAIICGFCLTGKMVEAEKLFHEMLGRGLEPD 430 (751)
Q Consensus 352 m~~~g~~p~~~~~~~li-~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~ 430 (751)
.+.. .|+-...|..+ -+|.|..-++-+.++++-..+.- ..+....|.......+.=+-..|++-..++.+.+-..
T Consensus 177 vL~d--n~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q~-pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~- 252 (557)
T KOG3785|consen 177 VLQD--NPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQF-PDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQE- 252 (557)
T ss_pred HHhc--ChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHhC-CCcHHHHHHHHHHHhhhhccchhHHHHHHHHhccccc-
Confidence 6654 24444444332 34455555566666655554432 1133344444433333222222333333333332111
Q ss_pred HHHHHHHHHHHHHcC-----ChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHH
Q 004470 431 EIVYTALIDGYCKAG-----GMKKAFSLHNNMVHMRLTPNVVTYTALADGLCKSGELETANELLHEMCRKGLQLNIYTYN 505 (751)
Q Consensus 431 ~~~~~~li~~~~~~g-----~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~~~ 505 (751)
| ..+.-.++.+ .-+.|++++--+.+. -+..-..|+-.|.+.+++.+|..+.+++.-. .|-.....
T Consensus 253 ---~-~f~~~l~rHNLVvFrngEgALqVLP~L~~~----IPEARlNL~iYyL~q~dVqeA~~L~Kdl~Pt--tP~EyilK 322 (557)
T KOG3785|consen 253 ---Y-PFIEYLCRHNLVVFRNGEGALQVLPSLMKH----IPEARLNLIIYYLNQNDVQEAISLCKDLDPT--TPYEYILK 322 (557)
T ss_pred ---c-hhHHHHHHcCeEEEeCCccHHHhchHHHhh----ChHhhhhheeeecccccHHHHHHHHhhcCCC--ChHHHHHH
Confidence 1 1122223322 335555555544432 1223334555566777777777666554311 12111111
Q ss_pred HHHHHHHHcC-------CHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 004470 506 SIVNGLCKAG-------NILQAVKLMEDMEVAGFHPDT-FTYTTIMDAYCKSGEMVKAHELLRDMLDKGLQPSVVTFNVL 577 (751)
Q Consensus 506 ~li~~~~~~g-------~~~~A~~~~~~~~~~~~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l 577 (751)
.+. +...| ...-|.+.|...-+.+..-|. .--.++...+.-..++|+.+-.++.+..-=...|... -.+
T Consensus 323 gvv--~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn-~N~ 399 (557)
T KOG3785|consen 323 GVV--FAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTNDDDFN-LNL 399 (557)
T ss_pred HHH--HHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhh-hHH
Confidence 111 22222 233444445444333332222 2234455555556667777777766655422223333 345
Q ss_pred HHHHHhcCChhHHHHHHHHHHHcCCCCCHhhHH-HHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHH-HHHHHHHHHhcC
Q 004470 578 MNGFCMSGMIEDGEKLLKWMLEKGLKPNAATYN-PLIKQHCLRNDMRTTAKIYKGMCAQGITPDGNT-YNILLQGHCKAR 655 (751)
Q Consensus 578 i~~~~~~g~~~~A~~l~~~~~~~g~~p~~~~~~-~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~-~~~li~~~~~~g 655 (751)
.++++..|++.+|+++|-......++ |..+|. .|.++|.+.++++.|++++-++-. +.+..+ ...+...|.+++
T Consensus 400 AQAk~atgny~eaEelf~~is~~~ik-n~~~Y~s~LArCyi~nkkP~lAW~~~lk~~t---~~e~fsLLqlIAn~CYk~~ 475 (557)
T KOG3785|consen 400 AQAKLATGNYVEAEELFIRISGPEIK-NKILYKSMLARCYIRNKKPQLAWDMMLKTNT---PSERFSLLQLIANDCYKAN 475 (557)
T ss_pred HHHHHHhcChHHHHHHHhhhcChhhh-hhHHHHHHHHHHHHhcCCchHHHHHHHhcCC---chhHHHHHHHHHHHHHHHH
Confidence 66777777777777777655543333 344443 344566777777777666554432 223333 233345566777
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCC
Q 004470 656 NMKEAWFLHKEMVQKGFNLTTSSYNALIKGFLKRKKYLEARELFEEMRRGGLVA-DREIYYFFVDINFEEGN 726 (751)
Q Consensus 656 ~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~ 726 (751)
.+=-|-+.|+.+... .|++.-| .|+.....-+|..+....-.| .......++..+...++
T Consensus 476 eFyyaaKAFd~lE~l--DP~pEnW---------eGKRGACaG~f~~l~~~~~~~~p~~~~rEVvhllr~~~n 536 (557)
T KOG3785|consen 476 EFYYAAKAFDELEIL--DPTPENW---------EGKRGACAGLFRQLANHKTDPIPISQMREVVHLLRMKPN 536 (557)
T ss_pred HHHHHHHhhhHHHcc--CCCcccc---------CCccchHHHHHHHHHcCCCCCCchhHHHHHHHHHHhCCC
Confidence 776666777666554 3444444 344444455555555432222 22344455555555544
No 58
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.52 E-value=1e-07 Score=98.58 Aligned_cols=534 Identities=11% Similarity=0.146 Sum_probs=327.0
Q ss_pred CCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCC-CccCHHhHHHHHHHHHhCCCCHHHHHHHHHhchhcCCCcCHHHHH
Q 004470 182 GSDPHVFDIFFQVLVEARKLNEARKLFEKLLNYG-LVISVDSCNLFLSRLSNTCDGLRMVVKSFTEFPELGICWNTASYN 260 (751)
Q Consensus 182 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g-~~p~~~~~~~ll~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 260 (751)
..-|.+|..-...+.++|++..-...|++++..= +.-....+...+.-+- ..+-.+-+..+|++.+.. ++..-+
T Consensus 99 HkmpRIwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~-~~~lPets~rvyrRYLk~----~P~~~e 173 (835)
T KOG2047|consen 99 HKMPRIWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVE-SHGLPETSIRVYRRYLKV----APEARE 173 (835)
T ss_pred hcCCHHHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHH-hCCChHHHHHHHHHHHhc----CHHHHH
Confidence 3457788888888889999988888898887651 1122334555555443 567778888999888877 444567
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcC------CCCCHHHHHHHHHHHHhcCCHH---HHHHHHHHHHHCCCCCC--cccH
Q 004470 261 IMIHCLCRFGKIKEAHLLLLQMELRG------CSPDVVSFSTIINGYCYLGELQ---RVLKLIEEMQIKGLKPN--PYTY 329 (751)
Q Consensus 261 ~li~~~~~~g~~~~A~~~~~~m~~~g------~~p~~~~~~~li~~~~~~g~~~---~A~~~~~~m~~~g~~p~--~~~~ 329 (751)
.-|..+++.++.++|.+.+....... .+.+-..|..+-+...+.-+.- ...++++.+... -+| ...|
T Consensus 174 eyie~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~r--ftDq~g~Lw 251 (835)
T KOG2047|consen 174 EYIEYLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRR--FTDQLGFLW 251 (835)
T ss_pred HHHHHHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhccc--CcHHHHHHH
Confidence 77888888999999988887765321 1234445555544444432221 122233333222 233 2457
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc----------------C------CHHHHHHHHHHH
Q 004470 330 NSVVRLLCKTSKVVEAETILREMMNQGIVPDNVIYTTLIDGFCKM----------------G------NVAAAYRLFDEM 387 (751)
Q Consensus 330 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~----------------g------~~~~A~~~~~~m 387 (751)
++|.+.|.+.|.+++|..++++.+.. ...+.-|..+-+.|+.- | +++-.+.-|+.+
T Consensus 252 ~SLAdYYIr~g~~ekarDvyeeai~~--v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~l 329 (835)
T KOG2047|consen 252 CSLADYYIRSGLFEKARDVYEEAIQT--VMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESL 329 (835)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHh--heehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHH
Confidence 88888888888888888888887765 23444444444444321 1 122233334444
Q ss_pred HhCCC-----------CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC------HHHHHHHHHHHHHcCChhHH
Q 004470 388 RGLNI-----------IPDLLTYTAIICGFCLTGKMVEAEKLFHEMLGRGLEPD------EIVYTALIDGYCKAGGMKKA 450 (751)
Q Consensus 388 ~~~~~-----------~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~------~~~~~~li~~~~~~g~~~~A 450 (751)
..+.. .-++..|..-+ -+..|+..+-...|.++... +.|. ...|..+.+.|-..|+++.|
T Consensus 330 m~rr~~~lNsVlLRQn~~nV~eW~kRV--~l~e~~~~~~i~tyteAv~~-vdP~ka~Gs~~~Lw~~faklYe~~~~l~~a 406 (835)
T KOG2047|consen 330 MNRRPLLLNSVLLRQNPHNVEEWHKRV--KLYEGNAAEQINTYTEAVKT-VDPKKAVGSPGTLWVEFAKLYENNGDLDDA 406 (835)
T ss_pred HhccchHHHHHHHhcCCccHHHHHhhh--hhhcCChHHHHHHHHHHHHc-cCcccCCCChhhHHHHHHHHHHhcCcHHHH
Confidence 33211 01233333322 23457778888888888765 3332 24678888999999999999
Q ss_pred HHHHHHHHhCCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-----------C------CHHHHHHHHHH
Q 004470 451 FSLHNNMVHMRLTPN---VVTYTALADGLCKSGELETANELLHEMCRKGLQ-----------L------NIYTYNSIVNG 510 (751)
Q Consensus 451 ~~~~~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~-----------~------~~~~~~~li~~ 510 (751)
..+|++..+...+-- ..+|-.-...-.+..+++.|+++++......-. + +...|...++.
T Consensus 407 Rvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~Dl 486 (835)
T KOG2047|consen 407 RVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADL 486 (835)
T ss_pred HHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHH
Confidence 999999887543311 234555555666778888999888876543111 1 22345566666
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHh---cCC
Q 004470 511 LCKAGNILQAVKLMEDMEVAGFHPDTFTYTTIMDAYCKSGEMVKAHELLRDMLDKGLQPSV-VTFNVLMNGFCM---SGM 586 (751)
Q Consensus 511 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~-~~~~~li~~~~~---~g~ 586 (751)
.-..|-++....+++.+....+-......| ....+-...-++++.+++++-+..=..|++ ..|+..+.-+.+ ...
T Consensus 487 eEs~gtfestk~vYdriidLriaTPqii~N-yAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~k 565 (835)
T KOG2047|consen 487 EESLGTFESTKAVYDRIIDLRIATPQIIIN-YAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTK 565 (835)
T ss_pred HHHhccHHHHHHHHHHHHHHhcCCHHHHHH-HHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCC
Confidence 667788888888888887765422222222 222234555678888888776654334444 356666655543 237
Q ss_pred hhHHHHHHHHHHHcCCCCCHhhHHHHH--HHHHHcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCCHHHHHH
Q 004470 587 IEDGEKLLKWMLEKGLKPNAATYNPLI--KQHCLRNDMRTTAKIYKGMCAQGITPD--GNTYNILLQGHCKARNMKEAWF 662 (751)
Q Consensus 587 ~~~A~~l~~~~~~~g~~p~~~~~~~l~--~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~~~~~li~~~~~~g~~~~A~~ 662 (751)
++.|..+|++.++ |++|...-+--|+ ..--..|-...|..+++++... +.+. ...|++.|.--...=-+..-..
T Consensus 566 lEraRdLFEqaL~-~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~~-v~~a~~l~myni~I~kaae~yGv~~TR~ 643 (835)
T KOG2047|consen 566 LERARDLFEQALD-GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATSA-VKEAQRLDMYNIYIKKAAEIYGVPRTRE 643 (835)
T ss_pred HHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHHHHHHhCCcccHH
Confidence 8899999999998 6666543322222 2223557788889999887653 3433 3457776654444333455567
Q ss_pred HHHHHHHCCCCCCHH---HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHhcCChhHHHHH
Q 004470 663 LHKEMVQKGFNLTTS---SYNALIKGFLKRKKYLEARELFEEMRRGGLVA--DREIYYFFVDINFEEGNTEITLEL 733 (751)
Q Consensus 663 ~~~~~~~~~~~p~~~---~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~ 733 (751)
+|+++++. -|+.. ......+.-++.|..+.|..++....+. ++| +...|...-..=.+.|+-+...+.
T Consensus 644 iYekaIe~--Lp~~~~r~mclrFAdlEtklGEidRARaIya~~sq~-~dPr~~~~fW~twk~FEvrHGnedT~keM 716 (835)
T KOG2047|consen 644 IYEKAIES--LPDSKAREMCLRFADLETKLGEIDRARAIYAHGSQI-CDPRVTTEFWDTWKEFEVRHGNEDTYKEM 716 (835)
T ss_pred HHHHHHHh--CChHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhhc-CCCcCChHHHHHHHHHHHhcCCHHHHHHH
Confidence 77777775 23332 3344555566788899999888887774 234 567777777667778884444433
No 59
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.52 E-value=1.2e-10 Score=123.79 Aligned_cols=517 Identities=12% Similarity=0.073 Sum_probs=244.3
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHhCCCccCHHhHHHHHHHHHhCCCCHHHHHHHHHhchhcCCCcCHHHHHHHHHH
Q 004470 186 HVFDIFFQVLVEARKLNEARKLFEKLLNYGLVISVDSCNLFLSRLSNTCDGLRMVVKSFTEFPELGICWNTASYNIMIHC 265 (751)
Q Consensus 186 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 265 (751)
.+|-.||.-|+..|+.+.|- +|.-|.......+...++.+..+-. ..++.+.+. .|-..+|..|..+
T Consensus 26 vtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~-~And~Enpk-----------ep~aDtyt~Ll~a 92 (1088)
T KOG4318|consen 26 VTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHK-EANDAENPK-----------EPLADTYTNLLKA 92 (1088)
T ss_pred hhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhccc-ccccccCCC-----------CCchhHHHHHHHH
Confidence 56777788888888777777 7776655444444444444443332 334444332 4566778888888
Q ss_pred HHhcCCHHHHHHHHHH-HH-------hcCCCCCHHHH--------------HHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 004470 266 LCRFGKIKEAHLLLLQ-ME-------LRGCSPDVVSF--------------STIINGYCYLGELQRVLKLIEEMQIKGLK 323 (751)
Q Consensus 266 ~~~~g~~~~A~~~~~~-m~-------~~g~~p~~~~~--------------~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 323 (751)
|.+.|++.- ++..++ |. ..|+.--..-+ ...+....-.|-++.+++++..+......
T Consensus 93 yr~hGDli~-fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwaqllkll~~~Pvsa~~ 171 (1088)
T KOG4318|consen 93 YRIHGDLIL-FEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQLLKLLAKVPVSAWN 171 (1088)
T ss_pred HHhccchHH-HHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHHHHHHHhhCCccccc
Confidence 888887654 222222 21 11221001100 11222233344445555554443221100
Q ss_pred CCcccHHHHHHHHHhcC-CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 004470 324 PNPYTYNSVVRLLCKTS-KVVEAETILREMMNQGIVPDNVIYTTLIDGFCKMGNVAAAYRLFDEMRGLNIIPDLLTYTAI 402 (751)
Q Consensus 324 p~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l 402 (751)
. +....++-+.... .+++-..+.+...+ .|+..+|..+++.-.-.|+++.|..++.+|.+.|...+..-|-.|
T Consensus 172 -~--p~~vfLrqnv~~ntpvekLl~~cksl~e---~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpir~HyFwpL 245 (1088)
T KOG4318|consen 172 -A--PFQVFLRQNVVDNTPVEKLLNMCKSLVE---APTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPIRAHYFWPL 245 (1088)
T ss_pred -c--hHHHHHHHhccCCchHHHHHHHHHHhhc---CCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCcccccchhh
Confidence 0 1111122222222 12222222222221 477888888888888888888888888888888877666655565
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH
Q 004470 403 ICGFCLTGKMVEAEKLFHEMLGRGLEPDEIVYTALIDGYCKAGGMKKAFSLHNNMVHMRLTPNVVTYTALADGLCKSGEL 482 (751)
Q Consensus 403 i~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 482 (751)
+.+ .++..-++.+++-|.+.|+.|+..|+..-+-.+.++|....+ +.| .+....+++-...-.-.|
T Consensus 246 l~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~t~~~--------~e~-sq~~hg~tAavrsaa~rg-- 311 (1088)
T KOG4318|consen 246 LLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQTKYG--------EEG-SQLAHGFTAAVRSAACRG-- 311 (1088)
T ss_pred hhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchhhhhc--------ccc-cchhhhhhHHHHHHHhcc--
Confidence 544 677777777778888888888888877666666554442111 111 112222222222222222
Q ss_pred HHHHHHHH------------HHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC---CCCCHHHHHHHHHHHH
Q 004470 483 ETANELLH------------EMCRKGLQLNIYTYNSIVNGLCKAGNILQAVKLMEDMEVAG---FHPDTFTYTTIMDAYC 547 (751)
Q Consensus 483 ~~A~~l~~------------~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~~~~~li~~~~ 547 (751)
..|.+.++ +..-.|.......|...+. ...+|+-++..++...+..-- -..++..|..++.-|.
T Consensus 312 ~~a~k~l~~nl~~~v~~s~k~~fLlg~d~~~aiws~c~~-l~hQgk~e~veqlvg~l~npt~r~s~~~V~a~~~~lrqyF 390 (1088)
T KOG4318|consen 312 LLANKRLRQNLRKSVIGSTKKLFLLGTDILEAIWSMCEK-LRHQGKGEEVEQLVGQLLNPTLRDSGQNVDAFGALLRQYF 390 (1088)
T ss_pred cHhHHHHHHHHHHHHHHHhhHHHHhccccchHHHHHHHH-HHHcCCCchHHHHHhhhcCCccccCcchHHHHHHHHHHHH
Confidence 11222211 1111233333344433333 333677777777776664311 1223445555555444
Q ss_pred HcCCHHHHHHHHH--HHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHH----cCCCC-------CHhhHHHHHH
Q 004470 548 KSGEMVKAHELLR--DMLDKGLQPSVVTFNVLMNGFCMSGMIEDGEKLLKWMLE----KGLKP-------NAATYNPLIK 614 (751)
Q Consensus 548 ~~g~~~~A~~~~~--~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~~~~----~g~~p-------~~~~~~~l~~ 614 (751)
+.-+..-...++. +.+... -+...--.++....+. +...+.+-+..+.. ....| -...-+.++.
T Consensus 391 rr~e~~~~~~i~~~~qgls~~--l~se~tp~vsell~~l-rkns~lr~lv~Lss~Eler~he~~~~~~h~irdi~~ql~l 467 (1088)
T KOG4318|consen 391 RRIERHICSRIYYAGQGLSLN--LNSEDTPRVSELLENL-RKNSFLRQLVGLSSTELERSHEPWPLIAHLIRDIANQLHL 467 (1088)
T ss_pred HHHHhhHHHHHHHHHHHHHhh--hchhhhHHHHHHHHHh-CcchHHHHHhhhhHHHHhcccccchhhhhHHHHHHHHHHH
Confidence 3222111111111 111100 0000000111111110 11111111111110 00111 1122334455
Q ss_pred HHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC--CCCCHHHHHHHHHHHHhcCCH
Q 004470 615 QHCLRNDMRTTAKIYKGMCAQGITPDGNTYNILLQGHCKARNMKEAWFLHKEMVQKG--FNLTTSSYNALIKGFLKRKKY 692 (751)
Q Consensus 615 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~ 692 (751)
.++..-+..++...-++....- -+ ..|..||+-++...+.+.|..+.++..... +..|..-+..+.+.+.+.+..
T Consensus 468 ~l~se~n~lK~l~~~ekye~~l-f~--g~ya~Li~l~~~hdkle~Al~~~~e~d~~d~s~~Ld~~~m~~l~dLL~r~~~l 544 (1088)
T KOG4318|consen 468 TLNSEYNKLKILCDEEKYEDLL-FA--GLYALLIKLMDLHDKLEYALSFVDEIDTRDESIHLDLPLMTSLQDLLQRLAIL 544 (1088)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-hh--hHHHHHhhhHHHHHHHHHHHhchhhhcccchhhhcccHhHHHHHHHHHHhHHH
Confidence 5555555555554433333211 11 456677777777777777777776665432 223444566667777777777
Q ss_pred HHHHHHHHHHHHCCC-CC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCC
Q 004470 693 LEARELFEEMRRGGL-VA-DREIYYFFVDINFEEGNTEITLELCDAAIECYLV 743 (751)
Q Consensus 693 ~~A~~~~~~~~~~~~-~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 743 (751)
.++.++++++.+.-. .| -..+...+.+.....|+.+.-.++.+-+...|+.
T Consensus 545 ~dl~tiL~e~ks~a~n~~~~a~~~f~~lns~a~agqqe~Lkkl~d~lvslgl~ 597 (1088)
T KOG4318|consen 545 YDLSTILYEDKSSAENEPLVAIILFPLLNSGAPAGQQEKLKKLADILVSLGLS 597 (1088)
T ss_pred HHHHHHHhhhhHHhhCCchHHHHHHHHHhhhhhccCHHHHHHHHHHHHHhhhh
Confidence 777777777665211 11 1344445556666667766666666665555543
No 60
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.48 E-value=4.5e-10 Score=109.85 Aligned_cols=285 Identities=12% Similarity=0.066 Sum_probs=146.5
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHH
Q 004470 375 GNVAAAYRLFDEMRGLNIIPDLLTYTAIICGFCLTGKMVEAEKLFHEMLGRGLEPDEIVYTALIDGYCKAGGMKKAFSLH 454 (751)
Q Consensus 375 g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~ 454 (751)
|++.+|.++..+-.+.+..| ...|..-..+.-+.|+.+.+-.++.+..+..-.++...+-+........|+...|..-.
T Consensus 98 G~~~qAEkl~~rnae~~e~p-~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~v 176 (400)
T COG3071 98 GDFQQAEKLLRRNAEHGEQP-VLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARENV 176 (400)
T ss_pred CcHHHHHHHHHHhhhcCcch-HHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHHH
Confidence 44444444444433333221 22333333344444444444444444443322223333333444444444444444444
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH-------HHHHHHHHHHHHcCCHHHHHHHHHHH
Q 004470 455 NNMVHMRLTPNVVTYTALADGLCKSGELETANELLHEMCRKGLQLNI-------YTYNSIVNGLCKAGNILQAVKLMEDM 527 (751)
Q Consensus 455 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~-------~~~~~li~~~~~~g~~~~A~~~~~~~ 527 (751)
.++.+.++. ++........+|.+.|++.....++..|.+.|.--+. .+|..+++-....+..+.-...|++.
T Consensus 177 ~~ll~~~pr-~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~~ 255 (400)
T COG3071 177 DQLLEMTPR-HPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKNQ 255 (400)
T ss_pred HHHHHhCcC-ChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhc
Confidence 444444332 3444444445555555555555555555544433222 34455555544444555555555555
Q ss_pred HHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHh
Q 004470 528 EVAGFHPDTFTYTTIMDAYCKSGEMVKAHELLRDMLDKGLQPSVVTFNVLMNGFCMSGMIEDGEKLLKWMLEKGLKPNAA 607 (751)
Q Consensus 528 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~g~~p~~~ 607 (751)
...- +.++..-.+++.-+...|+.++|.++.++..+++..|+ ...+ -.+.+-++.+.-++..++..+. .+.++.
T Consensus 256 pr~l-r~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~---L~~~-~~~l~~~d~~~l~k~~e~~l~~-h~~~p~ 329 (400)
T COG3071 256 PRKL-RNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR---LCRL-IPRLRPGDPEPLIKAAEKWLKQ-HPEDPL 329 (400)
T ss_pred cHHh-hcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh---HHHH-HhhcCCCCchHHHHHHHHHHHh-CCCChh
Confidence 4331 44555556666677777777777777777777655544 1111 2234455555555555555543 122345
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004470 608 TYNPLIKQHCLRNDMRTTAKIYKGMCAQGITPDGNTYNILLQGHCKARNMKEAWFLHKEMVQ 669 (751)
Q Consensus 608 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 669 (751)
.+.+|...|.+.+.+.+|.+.|+..++. .|+..+|+.+.+++.+.|+..+|.+..++...
T Consensus 330 L~~tLG~L~~k~~~w~kA~~~leaAl~~--~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~ 389 (400)
T COG3071 330 LLSTLGRLALKNKLWGKASEALEAALKL--RPSASDYAELADALDQLGEPEEAEQVRREALL 389 (400)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHhc--CCChhhHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 5666666666667777777777666653 46666666677777777777776666666554
No 61
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.48 E-value=1.5e-10 Score=123.18 Aligned_cols=93 Identities=13% Similarity=-0.071 Sum_probs=68.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC--CCCCHHHHHHHHHHH
Q 004470 644 YNILLQGHCKARNMKEAWFLHKEMVQKGFNLTTSSYNALIKGFLKRKKYLEARELFEEMRRGG--LVADREIYYFFVDIN 721 (751)
Q Consensus 644 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~l~~~~ 721 (751)
-+.++..++..-+..+++..-++....- - +..|..|++-++...+.++|..+.++..... +..|...+..+.+.+
T Consensus 462 ~~ql~l~l~se~n~lK~l~~~ekye~~l-f--~g~ya~Li~l~~~hdkle~Al~~~~e~d~~d~s~~Ld~~~m~~l~dLL 538 (1088)
T KOG4318|consen 462 ANQLHLTLNSEYNKLKILCDEEKYEDLL-F--AGLYALLIKLMDLHDKLEYALSFVDEIDTRDESIHLDLPLMTSLQDLL 538 (1088)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-h--hhHHHHHhhhHHHHHHHHHHHhchhhhcccchhhhcccHhHHHHHHHH
Confidence 3455566666666666665544443321 1 2678999999999999999999999986532 344666788899999
Q ss_pred HhcCChhHHHHHHHHHHH
Q 004470 722 FEEGNTEITLELCDAAIE 739 (751)
Q Consensus 722 ~~~g~~~~A~~~~~~~~~ 739 (751)
.+.+....+.++++++-+
T Consensus 539 ~r~~~l~dl~tiL~e~ks 556 (1088)
T KOG4318|consen 539 QRLAILYDLSTILYEDKS 556 (1088)
T ss_pred HHhHHHHHHHHHHhhhhH
Confidence 999999999999888765
No 62
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.48 E-value=1.3e-07 Score=97.93 Aligned_cols=491 Identities=12% Similarity=0.113 Sum_probs=309.3
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHhCCCccCHHhHHHHHHHHHhCCCCHHHHHHHHHhchhcCC------CcCHHHH
Q 004470 186 HVFDIFFQVLVEARKLNEARKLFEKLLNYGLVISVDSCNLFLSRLSNTCDGLRMVVKSFTEFPELGI------CWNTASY 259 (751)
Q Consensus 186 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~l~~~~~~~~~a~~~~~~~~~~~~------~~~~~~~ 259 (751)
.+|+..++-.-..|.++-++.+|++-++. .|.. .+-.+.-|. ..+++++|.+.+...+.... +.+-..|
T Consensus 139 rIW~lyl~Fv~~~~lPets~rvyrRYLk~--~P~~--~eeyie~L~-~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw 213 (835)
T KOG2047|consen 139 RIWDLYLKFVESHGLPETSIRVYRRYLKV--APEA--REEYIEYLA-KSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLW 213 (835)
T ss_pred cchHHHHHHHHhCCChHHHHHHHHHHHhc--CHHH--HHHHHHHHH-hccchHHHHHHHHHhcCchhhhhhcccchhhHH
Confidence 46777777777778888888888888775 3443 344555554 56778888887776653311 1244455
Q ss_pred HHHHHHHHhcCCHH---HHHHHHHHHHhcCCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHH
Q 004470 260 NIMIHCLCRFGKIK---EAHLLLLQMELRGCSPDV--VSFSTIINGYCYLGELQRVLKLIEEMQIKGLKPNPYTYNSVVR 334 (751)
Q Consensus 260 ~~li~~~~~~g~~~---~A~~~~~~m~~~g~~p~~--~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~ 334 (751)
..+-+...+.-+.- ....+++.+..+ -+|. ..|.+|.+-|.+.|.+++|..++++.... ...+..|+.+.+
T Consensus 214 ~elcdlis~~p~~~~slnvdaiiR~gi~r--ftDq~g~Lw~SLAdYYIr~g~~ekarDvyeeai~~--v~tvrDFt~ifd 289 (835)
T KOG2047|consen 214 LELCDLISQNPDKVQSLNVDAIIRGGIRR--FTDQLGFLWCSLADYYIRSGLFEKARDVYEEAIQT--VMTVRDFTQIFD 289 (835)
T ss_pred HHHHHHHHhCcchhcccCHHHHHHhhccc--CcHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHh--heehhhHHHHHH
Confidence 55544444332211 222333333332 2332 46777888888888888888888877665 234455555555
Q ss_pred HHHhcCC----------------------HHHHHHHHHHHHHCCC-----------CCCHHHHHHHHHHHHHcCCHHHHH
Q 004470 335 LLCKTSK----------------------VVEAETILREMMNQGI-----------VPDNVIYTTLIDGFCKMGNVAAAY 381 (751)
Q Consensus 335 ~~~~~g~----------------------~~~A~~~~~~m~~~g~-----------~p~~~~~~~li~~~~~~g~~~~A~ 381 (751)
+|..... ++-...-|+.+...+. +.++..|..-+. +..|+..+-.
T Consensus 290 ~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~~lNsVlLRQn~~nV~eW~kRV~--l~e~~~~~~i 367 (835)
T KOG2047|consen 290 AYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRPLLLNSVLLRQNPHNVEEWHKRVK--LYEGNAAEQI 367 (835)
T ss_pred HHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccchHHHHHHHhcCCccHHHHHhhhh--hhcCChHHHH
Confidence 5543211 1222233333333210 112222222222 2356677777
Q ss_pred HHHHHHHhCCCCCC------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHHcCChhHHHH
Q 004470 382 RLFDEMRGLNIIPD------LLTYTAIICGFCLTGKMVEAEKLFHEMLGRGLEPD---EIVYTALIDGYCKAGGMKKAFS 452 (751)
Q Consensus 382 ~~~~~m~~~~~~p~------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~---~~~~~~li~~~~~~g~~~~A~~ 452 (751)
..|.+.... +.|. ...|..+...|-..|+++.|..+|++...-..+-- ..+|..-...=.+..+++.|++
T Consensus 368 ~tyteAv~~-vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~ 446 (835)
T KOG2047|consen 368 NTYTEAVKT-VDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALK 446 (835)
T ss_pred HHHHHHHHc-cCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHH
Confidence 788777653 2222 34577888889999999999999999987644322 3455555566667788999999
Q ss_pred HHHHHHhCCCC-----------------CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC
Q 004470 453 LHNNMVHMRLT-----------------PNVVTYTALADGLCKSGELETANELLHEMCRKGLQLNIYTYNSIVNGLCKAG 515 (751)
Q Consensus 453 ~~~~~~~~~~~-----------------~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~~~~li~~~~~~g 515 (751)
++++.....-. .+...|...++..-..|-++....+++.+++..+. ++...-.....+-...
T Consensus 447 lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLria-TPqii~NyAmfLEeh~ 525 (835)
T KOG2047|consen 447 LMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIA-TPQIIINYAMFLEEHK 525 (835)
T ss_pred HHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhhH
Confidence 98887643111 12345666677777788899999999999887654 3433333333445566
Q ss_pred CHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHH---cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH--HHhcCChhH
Q 004470 516 NILQAVKLMEDMEVAGFHPDT-FTYTTIMDAYCK---SGEMVKAHELLRDMLDKGLQPSVVTFNVLMNG--FCMSGMIED 589 (751)
Q Consensus 516 ~~~~A~~~~~~~~~~~~~~~~-~~~~~li~~~~~---~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~--~~~~g~~~~ 589 (751)
-++++.+++++-...--.|++ ..|++.+.-+.+ ...++.|..+|++.++ |++|...-+-.|+.+ --+.|-...
T Consensus 526 yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~-~Cpp~~aKtiyLlYA~lEEe~GLar~ 604 (835)
T KOG2047|consen 526 YFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALD-GCPPEHAKTIYLLYAKLEEEHGLARH 604 (835)
T ss_pred HHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHHHhhHHHH
Confidence 788999988876554334554 456666655543 2478999999999998 677655433333322 224588889
Q ss_pred HHHHHHHHHHcCCCCC--HhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHH---HHHHHHHHHhcCCHHHHHHHH
Q 004470 590 GEKLLKWMLEKGLKPN--AATYNPLIKQHCLRNDMRTTAKIYKGMCAQGITPDGNT---YNILLQGHCKARNMKEAWFLH 664 (751)
Q Consensus 590 A~~l~~~~~~~g~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~---~~~li~~~~~~g~~~~A~~~~ 664 (751)
|+.++++.... +.+. ...||..|.--...=.+....++|++.++. -|+... .--..+.-++.|..+.|..++
T Consensus 605 amsiyerat~~-v~~a~~l~myni~I~kaae~yGv~~TR~iYekaIe~--Lp~~~~r~mclrFAdlEtklGEidRARaIy 681 (835)
T KOG2047|consen 605 AMSIYERATSA-VKEAQRLDMYNIYIKKAAEIYGVPRTREIYEKAIES--LPDSKAREMCLRFADLETKLGEIDRARAIY 681 (835)
T ss_pred HHHHHHHHHhc-CCHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHh--CChHHHHHHHHHHHHHhhhhhhHHHHHHHH
Confidence 99999997654 3333 356888776655555566778889988884 566444 333455667899999999999
Q ss_pred HHHHHC-CCCCCHHHHHHHHHHHHhcCCHH
Q 004470 665 KEMVQK-GFNLTTSSYNALIKGFLKRKKYL 693 (751)
Q Consensus 665 ~~~~~~-~~~p~~~~~~~l~~~~~~~g~~~ 693 (751)
...-+. ++..+...|.+.-..-.+.|+-+
T Consensus 682 a~~sq~~dPr~~~~fW~twk~FEvrHGned 711 (835)
T KOG2047|consen 682 AHGSQICDPRVTTEFWDTWKEFEVRHGNED 711 (835)
T ss_pred HhhhhcCCCcCChHHHHHHHHHHHhcCCHH
Confidence 887664 56667888998888888999933
No 63
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.47 E-value=7.7e-09 Score=99.01 Aligned_cols=485 Identities=11% Similarity=0.088 Sum_probs=302.4
Q ss_pred cCChHHHHHHHHHHHcCCCCCchhhhHHHHHHHHHhhhcCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCccCHH
Q 004470 142 AKDLKTAHGLIHDFWAKPNLDASIAFTHFVERLIYTYKDWGSDPHVFDIFFQVLVEARKLNEARKLFEKLLNYGLVISVD 221 (751)
Q Consensus 142 ~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~ 221 (751)
.+++..|+++|+-....+. . ....+-.-++.++.+.|++++|+.+|..+....-.|...
T Consensus 35 ~rDytGAislLefk~~~~~---E------------------EE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el 93 (557)
T KOG3785|consen 35 NRDYTGAISLLEFKLNLDR---E------------------EEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKDDAPAEL 93 (557)
T ss_pred cccchhHHHHHHHhhccch---h------------------hhHHHHHHHHHHHHhhccHHHHHHHHHHHhccCCCCccc
Confidence 5778888888877553320 0 001223347788999999999999999998766556655
Q ss_pred hHHHHHHHHHhCCCCHHHHHHHHHhchhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q 004470 222 SCNLFLSRLSNTCDGLRMVVKSFTEFPELGICWNTASYNIMIHCLCRFGKIKEAHLLLLQMELRGCSPDVVSFSTIINGY 301 (751)
Q Consensus 222 ~~~~ll~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~ 301 (751)
..|..--.++ .|.+.+|..+-.++.+ ++-.-..|.+.-.|.|+-++-..+-+.+.+ ...---+|....
T Consensus 94 ~vnLAcc~Fy--Lg~Y~eA~~~~~ka~k-----~pL~~RLlfhlahklndEk~~~~fh~~LqD-----~~EdqLSLAsvh 161 (557)
T KOG3785|consen 94 GVNLACCKFY--LGQYIEAKSIAEKAPK-----TPLCIRLLFHLAHKLNDEKRILTFHSSLQD-----TLEDQLSLASVH 161 (557)
T ss_pred chhHHHHHHH--HHHHHHHHHHHhhCCC-----ChHHHHHHHHHHHHhCcHHHHHHHHHHHhh-----hHHHHHhHHHHH
Confidence 5555554444 4777888777665543 333334455555677777776666655543 223334455555
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCcccHHHH-HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHH
Q 004470 302 CYLGELQRVLKLIEEMQIKGLKPNPYTYNSV-VRLLCKTSKVVEAETILREMMNQGIVPDNVIYTTLIDGFCKMGNVAAA 380 (751)
Q Consensus 302 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l-i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A 380 (751)
.-.-.+.+|++++.+.... .|+-...|.- .-+|.+..-++-+.+++.--+.. ++.+..+.|..+....+.=+-..|
T Consensus 162 YmR~HYQeAIdvYkrvL~d--n~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q-~pdStiA~NLkacn~fRl~ngr~a 238 (557)
T KOG3785|consen 162 YMRMHYQEAIDVYKRVLQD--NPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQ-FPDSTIAKNLKACNLFRLINGRTA 238 (557)
T ss_pred HHHHHHHHHHHHHHHHHhc--ChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHh-CCCcHHHHHHHHHHHhhhhccchh
Confidence 5566789999999999876 3455555543 45677888889999999888876 344455666666655554333334
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhc-----CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHH
Q 004470 381 YRLFDEMRGLNIIPDLLTYTAIICGFCLT-----GKMVEAEKLFHEMLGRGLEPDEIVYTALIDGYCKAGGMKKAFSLHN 455 (751)
Q Consensus 381 ~~~~~~m~~~~~~p~~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 455 (751)
.+-..++...+-. . | -.+.-+|+. .+-+.|++++-.+.+. -|. .--.|+-.|.+.+++.+|..+.+
T Consensus 239 e~E~k~ladN~~~-~---~-~f~~~l~rHNLVvFrngEgALqVLP~L~~~--IPE--ARlNL~iYyL~q~dVqeA~~L~K 309 (557)
T KOG3785|consen 239 EDEKKELADNIDQ-E---Y-PFIEYLCRHNLVVFRNGEGALQVLPSLMKH--IPE--ARLNLIIYYLNQNDVQEAISLCK 309 (557)
T ss_pred HHHHHHHHhcccc-c---c-hhHHHHHHcCeEEEeCCccHHHhchHHHhh--ChH--hhhhheeeecccccHHHHHHHHh
Confidence 4444444443211 1 1 123333333 3446788877766653 332 23346667899999999999887
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHhcC-------CHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHH
Q 004470 456 NMVHMRLTPNVVTYTALADGLCKSG-------ELETANELLHEMCRKGLQLNIY-TYNSIVNGLCKAGNILQAVKLMEDM 527 (751)
Q Consensus 456 ~~~~~~~~~~~~~~~~li~~~~~~g-------~~~~A~~l~~~m~~~g~~~~~~-~~~~li~~~~~~g~~~~A~~~~~~~ 527 (751)
++.- .++.-|-.-.-.+...| .+.-|.+.|+..-+++..-|.. .-.++..++.-..++++.+..++.+
T Consensus 310 dl~P----ttP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi 385 (557)
T KOG3785|consen 310 DLDP----TTPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSI 385 (557)
T ss_pred hcCC----CChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7642 12222222222233333 3566777777666655443332 3445666666777899999999988
Q ss_pred HHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHh
Q 004470 528 EVAGFHPDTFTYTTIMDAYCKSGEMVKAHELLRDMLDKGLQPSVVTFNVLMNGFCMSGMIEDGEKLLKWMLEKGLKPNAA 607 (751)
Q Consensus 528 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~g~~p~~~ 607 (751)
...-...|...+ .+.++++..|.+.+|+++|-++....++.+..-...|..+|.+.++++.|.+++-++-. ..+..
T Consensus 386 ~sYF~NdD~Fn~-N~AQAk~atgny~eaEelf~~is~~~ikn~~~Y~s~LArCyi~nkkP~lAW~~~lk~~t---~~e~f 461 (557)
T KOG3785|consen 386 ESYFTNDDDFNL-NLAQAKLATGNYVEAEELFIRISGPEIKNKILYKSMLARCYIRNKKPQLAWDMMLKTNT---PSERF 461 (557)
T ss_pred HHHhcCcchhhh-HHHHHHHHhcChHHHHHHHhhhcChhhhhhHHHHHHHHHHHHhcCCchHHHHHHHhcCC---chhHH
Confidence 876544445444 47889999999999999999887665554454556677899999999999887755432 22344
Q ss_pred hHH-HHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHH
Q 004470 608 TYN-PLIKQHCLRNDMRTTAKIYKGMCAQGITPDGNTYNILLQGHCKARNMKEAWFLHKEMVQKGFNLT-TSSYNALIKG 685 (751)
Q Consensus 608 ~~~-~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~ 685 (751)
+.. .+..-|.+.+.+--|.+.|+.+... .|++..|. |+-.....+|..+....-.|- ......++..
T Consensus 462 sLLqlIAn~CYk~~eFyyaaKAFd~lE~l--DP~pEnWe---------GKRGACaG~f~~l~~~~~~~~p~~~~rEVvhl 530 (557)
T KOG3785|consen 462 SLLQLIANDCYKANEFYYAAKAFDELEIL--DPTPENWE---------GKRGACAGLFRQLANHKTDPIPISQMREVVHL 530 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHcc--CCCccccC---------CccchHHHHHHHHHcCCCCCCchhHHHHHHHH
Confidence 433 3445678999999999999988875 46666553 444445556666655433222 2344455555
Q ss_pred HHhcC
Q 004470 686 FLKRK 690 (751)
Q Consensus 686 ~~~~g 690 (751)
+...+
T Consensus 531 lr~~~ 535 (557)
T KOG3785|consen 531 LRMKP 535 (557)
T ss_pred HHhCC
Confidence 54443
No 64
>PRK12370 invasion protein regulator; Provisional
Probab=99.42 E-value=4.7e-11 Score=131.96 Aligned_cols=258 Identities=13% Similarity=0.052 Sum_probs=178.5
Q ss_pred CChHHHHHHHHHHHcCCCCCchhhhHHHHHHHHHhhhcCCCChhhHHHHHH--HHHhcCChhHHHHHHHHHHhCCCccCH
Q 004470 143 KDLKTAHGLIHDFWAKPNLDASIAFTHFVERLIYTYKDWGSDPHVFDIFFQ--VLVEARKLNEARKLFEKLLNYGLVISV 220 (751)
Q Consensus 143 ~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~--~~~~~g~~~~A~~~~~~~~~~g~~p~~ 220 (751)
..+++|..+++++++.+.. .+.... .+- .++..+.. .+...+++++|...++++++. .|+.
T Consensus 275 ~~~~~A~~~~~~Al~ldP~---~a~a~~--~La----------~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~l--dP~~ 337 (553)
T PRK12370 275 YSLQQALKLLTQCVNMSPN---SIAPYC--ALA----------ECYLSMAQMGIFDKQNAMIKAKEHAIKATEL--DHNN 337 (553)
T ss_pred HHHHHHHHHHHHHHhcCCc---cHHHHH--HHH----------HHHHHHHHcCCcccchHHHHHHHHHHHHHhc--CCCC
Confidence 4689999999999987632 221111 110 01111111 122456789999999999987 6777
Q ss_pred HhHHHHHHHHHhCCCCHHHHHHHHHhchhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHH
Q 004470 221 DSCNLFLSRLSNTCDGLRMVVKSFTEFPELGICWNTASYNIMIHCLCRFGKIKEAHLLLLQMELRGCSPDVVSFSTIING 300 (751)
Q Consensus 221 ~~~~~ll~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~ 300 (751)
......++.+....|++++|...|+++.+.+|. +...+..+...+...|++++|+..+++..+.... +...+..++..
T Consensus 338 ~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~-~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~-~~~~~~~~~~~ 415 (553)
T PRK12370 338 PQALGLLGLINTIHSEYIVGSLLFKQANLLSPI-SADIKYYYGWNLFMAGQLEEALQTINECLKLDPT-RAAAGITKLWI 415 (553)
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-ChhhHHHHHHH
Confidence 766667777766789999999999999998765 6778888999999999999999999998876532 22333444555
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcCCHHH
Q 004470 301 YCYLGELQRVLKLIEEMQIKGLKPNPYTYNSVVRLLCKTSKVVEAETILREMMNQGIVPD-NVIYTTLIDGFCKMGNVAA 379 (751)
Q Consensus 301 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~ 379 (751)
+...|++++|.+.++++.+...+-+...+..+..++...|++++|...++++... .|+ ....+.+...|+..| ++
T Consensus 416 ~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g--~~ 491 (553)
T PRK12370 416 TYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQ--EITGLIAVNLLYAEYCQNS--ER 491 (553)
T ss_pred HHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhc--cchhHHHHHHHHHHHhccH--HH
Confidence 7778999999999999876642324555777888889999999999999987765 333 445566667778877 47
Q ss_pred HHHHHHHHHhCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 004470 380 AYRLFDEMRGLN-IIPDLLTYTAIICGFCLTGKMVEAEKLFHEMLGRG 426 (751)
Q Consensus 380 A~~~~~~m~~~~-~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 426 (751)
|...++.+.+.. ..+....+ +-..+.-.|+-+.+..+ +++.+.+
T Consensus 492 a~~~l~~ll~~~~~~~~~~~~--~~~~~~~~g~~~~~~~~-~~~~~~~ 536 (553)
T PRK12370 492 ALPTIREFLESEQRIDNNPGL--LPLVLVAHGEAIAEKMW-NKFKNED 536 (553)
T ss_pred HHHHHHHHHHHhhHhhcCchH--HHHHHHHHhhhHHHHHH-HHhhccc
Confidence 777777765532 11222223 33345556777777666 7777653
No 65
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=99.42 E-value=1.8e-08 Score=108.85 Aligned_cols=585 Identities=11% Similarity=0.017 Sum_probs=310.9
Q ss_pred hhcCChHHHHHHHHhhhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHcCCCCCchhhhHHHHHHHHHhhhcCCCCh
Q 004470 106 DIRSDYRLVLDFFDWACLRREPILEARCIVVQISVAAKDLKTAHGLIHDFWAKPNLDASIAFTHFVERLIYTYKDWGSDP 185 (751)
Q Consensus 106 ~~~~~~~~al~~f~~~~~~~~~~~~~~~~~~~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 185 (751)
.++++...|+..|-.+.+..+.-..+++.+++++...-+...|.+.+..+...+ +.+.
T Consensus 469 ~~rK~~~~al~ali~alrld~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLD----------------------atda 526 (1238)
T KOG1127|consen 469 CMRKNSALALHALIRALRLDVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELD----------------------ATDA 526 (1238)
T ss_pred HhhhhHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC----------------------chhh
Confidence 356777788888887777777777889999999987778888888888877665 4455
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHhCCCccC-HHhHHHH-HHHHHhCCCCHHHHHHHHHhchhcCCCcCHHHHHHHH
Q 004470 186 HVFDIFFQVLVEARKLNEARKLFEKLLNYGLVIS-VDSCNLF-LSRLSNTCDGLRMVVKSFTEFPELGICWNTASYNIMI 263 (751)
Q Consensus 186 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~-~~~~~~l-l~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li 263 (751)
.+.-..+..|++...++.|..+.-..-+. .|- ....|-. .+-++...++...|..-|+.+....|. |...|..|+
T Consensus 527 eaaaa~adtyae~~~we~a~~I~l~~~qk--a~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPk-D~n~W~gLG 603 (1238)
T KOG1127|consen 527 EAAAASADTYAEESTWEEAFEICLRAAQK--APAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPK-DYNLWLGLG 603 (1238)
T ss_pred hhHHHHHHHhhccccHHHHHHHHHHHhhh--chHHHHHhhhhhccccccCccchhhHHHHHHHHhcCCch-hHHHHHHHH
Confidence 66677888899999999998884433322 111 1111111 344444668889999999999988776 888999999
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHH--HHHHHHhcCCHHHHHHHHHHHHHC------CCCCCcccHHHHHHH
Q 004470 264 HCLCRFGKIKEAHLLLLQMELRGCSPDVVSFST--IINGYCYLGELQRVLKLIEEMQIK------GLKPNPYTYNSVVRL 335 (751)
Q Consensus 264 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~--li~~~~~~g~~~~A~~~~~~m~~~------g~~p~~~~~~~li~~ 335 (751)
.+|.+.|++..|+++|.+..... |+ .+|.. .....|..|++++|+..+...... +..--..++......
T Consensus 604 eAY~~sGry~~AlKvF~kAs~Lr--P~-s~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd 680 (1238)
T KOG1127|consen 604 EAYPESGRYSHALKVFTKASLLR--PL-SKYGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKD 680 (1238)
T ss_pred HHHHhcCceehHHHhhhhhHhcC--cH-hHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 99999999999999998877642 33 23332 233457789999999998887543 111123333333444
Q ss_pred HHhcCCHHHHHHHHHHHHHC-------CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 004470 336 LCKTSKVVEAETILREMMNQ-------GIVPDNVIYTTLIDGFCKMGNVAAAYRLFDEMRGLNIIPDLLTYTAIICGFCL 408 (751)
Q Consensus 336 ~~~~g~~~~A~~~~~~m~~~-------g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~ 408 (751)
+...|-...|...+++-++. ....+...|-.+ ..|..+|-... .+ .|+......+..-.-.
T Consensus 681 ~~~~gf~~kavd~~eksie~f~~~l~h~~~~~~~~Wi~a----------sdac~~f~q~e-~~-~vn~h~l~il~~q~e~ 748 (1238)
T KOG1127|consen 681 SAITGFQKKAVDFFEKSIESFIVSLIHSLQSDRLQWIVA----------SDACYIFSQEE-PS-IVNMHYLIILSKQLEK 748 (1238)
T ss_pred HHHHHHhhhhhHHHHHHHHHHHHHHHHhhhhhHHHHHHH----------hHHHHHHHHhc-cc-chHHHHHHHHHHHHHh
Confidence 44445445555555544332 111122222221 12233333322 11 1222111111111111
Q ss_pred cCCH---H---HHHHHHHHHHHCCCCCCHHHHHHHHHHHHH----cC----ChhHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 004470 409 TGKM---V---EAEKLFHEMLGRGLEPDEIVYTALIDGYCK----AG----GMKKAFSLHNNMVHMRLTPNVVTYTALAD 474 (751)
Q Consensus 409 ~g~~---~---~A~~~~~~m~~~~~~p~~~~~~~li~~~~~----~g----~~~~A~~~~~~~~~~~~~~~~~~~~~li~ 474 (751)
.+.. | -+.+.+-.-++ ...+..+|..|+..|.+ .| +...|+..+.+.++.. ..+..+|+.|.-
T Consensus 749 ~~~l~~~d~l~Lg~~c~~~hls--l~~~~~~WyNLGinylr~f~~l~et~~~~~~Ai~c~KkaV~L~-ann~~~WnaLGV 825 (1238)
T KOG1127|consen 749 TGALKKNDLLFLGYECGIAHLS--LAIHMYPWYNLGINYLRYFLLLGETMKDACTAIRCCKKAVSLC-ANNEGLWNALGV 825 (1238)
T ss_pred cccCcchhHHHHHHHHhhHHHH--HhhccchHHHHhHHHHHHHHHcCCcchhHHHHHHHHHHHHHHh-hccHHHHHHHHH
Confidence 1111 1 01111111111 11123334444333322 11 2235666666655542 225666666655
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHH
Q 004470 475 GLCKSGELETANELLHEMCRKGLQLNIYTYNSIVNGLCKAGNILQAVKLMEDMEVAGFHPDTFTYTTIMDAYCKSGEMVK 554 (751)
Q Consensus 475 ~~~~~g~~~~A~~l~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 554 (751)
. ...|++.-|..-|-+-.... +....+|..+.-.+.+..+++.|...|....... +.+...|-.........|+.-+
T Consensus 826 l-sg~gnva~aQHCfIks~~se-p~~~~~W~NlgvL~l~n~d~E~A~~af~~~qSLd-P~nl~~WlG~Ali~eavG~ii~ 902 (1238)
T KOG1127|consen 826 L-SGIGNVACAQHCFIKSRFSE-PTCHCQWLNLGVLVLENQDFEHAEPAFSSVQSLD-PLNLVQWLGEALIPEAVGRIIE 902 (1238)
T ss_pred h-hccchhhhhhhhhhhhhhcc-ccchhheeccceeEEecccHHHhhHHHHhhhhcC-chhhHHHHHHHHhHHHHHHHHH
Confidence 4 55566666666665554442 2255666666666777777777777777776654 4455555444444455666666
Q ss_pred HHHHHHHH--H--hCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHH----------HHcCCCCCHhhHHHHHHHHHHcC
Q 004470 555 AHELLRDM--L--DKGLQPSVVTFNVLMNGFCMSGMIEDGEKLLKWM----------LEKGLKPNAATYNPLIKQHCLRN 620 (751)
Q Consensus 555 A~~~~~~~--~--~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~~----------~~~g~~p~~~~~~~l~~~~~~~g 620 (751)
+..+|..- . ..|--++..-|-........+|+.++-+...+++ .. +.+.+...|...+...-+.+
T Consensus 903 ~~~lfaHs~el~~~~gka~~f~Yw~c~te~h~~Ng~~e~~I~t~~ki~sAs~al~~yf~-~~p~~~fAy~~~gstlEhL~ 981 (1238)
T KOG1127|consen 903 RLILFAHSDELCSKEGKAKKFQYWLCATEIHLQNGNIEESINTARKISSASLALSYYFL-GHPQLCFAYAANGSTLEHLE 981 (1238)
T ss_pred HHHHHHhhHHhhccccccchhhHHHHHHHHHHhccchHHHHHHhhhhhhhHHHHHHHHh-cCcchhHHHHHHHhHHHHHH
Confidence 66666541 1 1122233333322222333445544433332222 22 23334556666665556666
Q ss_pred CHHHHHHHHHHHHHC-CCCCCHHHHH----HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 004470 621 DMRTTAKIYKGMCAQ-GITPDGNTYN----ILLQGHCKARNMKEAWFLHKEMVQKGFNLTTSSYNALIKGFLKRKKYLEA 695 (751)
Q Consensus 621 ~~~~A~~~~~~m~~~-g~~p~~~~~~----~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A 695 (751)
.++.|.+...+.+.. ...-+...|+ .+.+.++..|+++.|..-+..... ..+..+..+-+.. +-.|+++++
T Consensus 982 ey~~a~ela~RliglLe~k~d~sqynvak~~~gRL~lslgefe~A~~a~~~~~~---evdEdi~gt~l~l-Ffkndf~~s 1057 (1238)
T KOG1127|consen 982 EYRAALELATRLIGLLELKLDESQYNVAKPDAGRLELSLGEFESAKKASWKEWM---EVDEDIRGTDLTL-FFKNDFFSS 1057 (1238)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhhcchhhHhhhhcccch---hHHHHHhhhhHHH-HHHhHHHHH
Confidence 666666655554320 0012333333 233445555666655443322111 0112222211211 335677777
Q ss_pred HHHHHHHHHCC-CCCCH-HHHHHHHHHHHhcCChhHHHHHHHHHHHcC
Q 004470 696 RELFEEMRRGG-LVADR-EIYYFFVDINFEEGNTEITLELCDAAIECY 741 (751)
Q Consensus 696 ~~~~~~~~~~~-~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 741 (751)
.+.|++++..- -..|. .....++.+...+|..+.|..++-+.....
T Consensus 1058 l~~fe~aLsis~se~d~vvLl~kva~~~g~~~~k~~A~~lLfe~~~ls 1105 (1238)
T KOG1127|consen 1058 LEFFEQALSISNSESDKVVLLCKVAVCMGLARQKNDAQFLLFEVKSLS 1105 (1238)
T ss_pred HHHHHHHhhhcccccchhhhhHHHHHHHhhcccchHHHHHHHHHHHhC
Confidence 77777776521 12222 333445556666777777777776665544
No 66
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.40 E-value=2.1e-08 Score=102.78 Aligned_cols=146 Identities=12% Similarity=0.036 Sum_probs=79.0
Q ss_pred ChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHHcCCHHHHHHHHH--------HHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 004470 586 MIEDGEKLLKWMLEKGLKPNAATYNPLIKQHCLRNDMRTTAKIYK--------GMCAQGITPDGNTYNILLQGHCKARNM 657 (751)
Q Consensus 586 ~~~~A~~l~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~--------~m~~~g~~p~~~~~~~li~~~~~~g~~ 657 (751)
...+|.+++....+....-...+.-..+......|+++.|++++. .+.+.+..| .+...+...+.+.++.
T Consensus 356 ~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~~~~P--~~V~aiv~l~~~~~~~ 433 (652)
T KOG2376|consen 356 KHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSILEAKHLP--GTVGAIVALYYKIKDN 433 (652)
T ss_pred HHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhhccCh--hHHHHHHHHHHhccCC
Confidence 455666666655554222223444455555666777777777776 444433333 3334455566666665
Q ss_pred HHHHHHHHHHHHC--CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHH
Q 004470 658 KEAWFLHKEMVQK--GFNLT----TSSYNALIKGFLKRKKYLEARELFEEMRRGGLVADREIYYFFVDINFEEGNTEITL 731 (751)
Q Consensus 658 ~~A~~~~~~~~~~--~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 731 (751)
+.|..++.+++.. .-.+. ..++..++..-.+.|+-++|..+++++.+.. ++|..+...++-+|++. +.+.|.
T Consensus 434 ~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~n-~~d~~~l~~lV~a~~~~-d~eka~ 511 (652)
T KOG2376|consen 434 DSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLEELVKFN-PNDTDLLVQLVTAYARL-DPEKAE 511 (652)
T ss_pred ccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHhC-CchHHHHHHHHHHHHhc-CHHHHH
Confidence 5566555555431 00111 1233333333445677777777777777654 56666666666666655 456665
Q ss_pred HHHH
Q 004470 732 ELCD 735 (751)
Q Consensus 732 ~~~~ 735 (751)
.+-+
T Consensus 512 ~l~k 515 (652)
T KOG2376|consen 512 SLSK 515 (652)
T ss_pred HHhh
Confidence 5433
No 67
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.39 E-value=3.8e-10 Score=110.87 Aligned_cols=201 Identities=14% Similarity=0.139 Sum_probs=145.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHH
Q 004470 536 TFTYTTIMDAYCKSGEMVKAHELLRDMLDKGLQPSVVTFNVLMNGFCMSGMIEDGEKLLKWMLEKGLKPNAATYNPLIKQ 615 (751)
Q Consensus 536 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~g~~p~~~~~~~l~~~ 615 (751)
...+..+...+...|++++|.+.++++.+.. +.+...+..+...+...|++++|.+.+++..+... .+...+..+...
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~~~~~ 108 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLNP-NNGDVLNNYGTF 108 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC-CCHHHHHHHHHH
Confidence 4556666677777777777777777776553 33556666777777777777777777777776532 244566666777
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 004470 616 HCLRNDMRTTAKIYKGMCAQGITP-DGNTYNILLQGHCKARNMKEAWFLHKEMVQKGFNLTTSSYNALIKGFLKRKKYLE 694 (751)
Q Consensus 616 ~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 694 (751)
+...|++++|.+.+++..+....+ ....+..+...+...|++++|...+++..+..+. +...+..++..+...|++++
T Consensus 109 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~ 187 (234)
T TIGR02521 109 LCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQ-RPESLLELAELYYLRGQYKD 187 (234)
T ss_pred HHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-ChHHHHHHHHHHHHcCCHHH
Confidence 777788888888887777642222 3455666778888888999999888888876543 56678888888888999999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 004470 695 ARELFEEMRRGGLVADREIYYFFVDINFEEGNTEITLELCDAAIEC 740 (751)
Q Consensus 695 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 740 (751)
|...++++.+. .+.+...+..++..+...|+.++|..+.+.+.+.
T Consensus 188 A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 232 (234)
T TIGR02521 188 ARAYLERYQQT-YNQTAESLWLGIRIARALGDVAAAQRYGAQLQKL 232 (234)
T ss_pred HHHHHHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhh
Confidence 99999888876 3556677777778888889999988887776554
No 68
>PRK12370 invasion protein regulator; Provisional
Probab=99.39 E-value=1.4e-10 Score=128.17 Aligned_cols=219 Identities=13% Similarity=0.044 Sum_probs=165.2
Q ss_pred CCCHHHHHHHHHhchhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 004470 234 CDGLRMVVKSFTEFPELGICWNTASYNIMIHCLCRFGKIKEAHLLLLQMELRGCSPDVVSFSTIINGYCYLGELQRVLKL 313 (751)
Q Consensus 234 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~ 313 (751)
.+++++|...++++.+.++. +..++..+...+...|++++|...|++..+.+. .+...|..+...+...|++++|+..
T Consensus 317 ~~~~~~A~~~~~~Al~ldP~-~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P-~~~~a~~~lg~~l~~~G~~~eAi~~ 394 (553)
T PRK12370 317 QNAMIKAKEHAIKATELDHN-NPQALGLLGLINTIHSEYIVGSLLFKQANLLSP-ISADIKYYYGWNLFMAGQLEEALQT 394 (553)
T ss_pred chHHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 46789999999999999776 888999999999999999999999999988653 3567788899999999999999999
Q ss_pred HHHHHHCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCC
Q 004470 314 IEEMQIKGLKPNPYTYNSVVRLLCKTSKVVEAETILREMMNQGIVPDNVIYTTLIDGFCKMGNVAAAYRLFDEMRGLNII 393 (751)
Q Consensus 314 ~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~ 393 (751)
+++..+.... +...+..++..+...|++++|...++++.....+-+...+..+...|...|+.++|...++++......
T Consensus 395 ~~~Al~l~P~-~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~ 473 (553)
T PRK12370 395 INECLKLDPT-RAAAGITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEIT 473 (553)
T ss_pred HHHHHhcCCC-ChhhHHHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccch
Confidence 9999987432 333444455567778999999999999887642334556788888999999999999999998665322
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCC
Q 004470 394 PDLLTYTAIICGFCLTGKMVEAEKLFHEMLGRG-LEPDEIVYTALIDGYCKAGGMKKAFSLHNNMVHMR 461 (751)
Q Consensus 394 p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 461 (751)
+....+.+...|+..| ++|...++.+.+.. ..+....+ +-..|.-.|+-+.+..+ +++.+.+
T Consensus 474 -~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~~~~~~~~~~~--~~~~~~~~g~~~~~~~~-~~~~~~~ 536 (553)
T PRK12370 474 -GLIAVNLLYAEYCQNS--ERALPTIREFLESEQRIDNNPGL--LPLVLVAHGEAIAEKMW-NKFKNED 536 (553)
T ss_pred -hHHHHHHHHHHHhccH--HHHHHHHHHHHHHhhHhhcCchH--HHHHHHHHhhhHHHHHH-HHhhccc
Confidence 3445566666777777 47888777776541 12222222 33445556777777776 7777654
No 69
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.39 E-value=2e-07 Score=100.71 Aligned_cols=574 Identities=12% Similarity=0.081 Sum_probs=296.0
Q ss_pred chhHHHHHHHhhcCChHHHHHHHHhhhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHcCCCCCchhhhHHHHHHHH
Q 004470 96 RSDHLIWVLMDIRSDYRLVLDFFDWACLRREPILEARCIVVQISVAAKDLKTAHGLIHDFWAKPNLDASIAFTHFVERLI 175 (751)
Q Consensus 96 ~~~~~~~~l~~~~~~~~~al~~f~~~~~~~~~~~~~~~~~~~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~l~ 175 (751)
+|+.+..+-.-++.+|+.|+.|........++ +.....+..+....+...++.+++-.+++.+..+.+.--+.+++.-+
T Consensus 510 TPdymflLq~l~r~sPD~~~qFa~~l~Q~~~~-~~die~I~DlFme~N~iQq~TSFLLdaLK~~~Pd~g~LQTrLLE~NL 588 (1666)
T KOG0985|consen 510 TPDYMFLLQQLKRSSPDQALQFAMMLVQDEEP-LADIEQIVDLFMELNLIQQCTSFLLDALKLNSPDEGHLQTRLLEMNL 588 (1666)
T ss_pred CccHHHHHHHHHccChhHHHHHHHHhhccCCC-cccHHHHHHHHHHHHhhhhhHHHHHHHhcCCChhhhhHHHHHHHHHh
Confidence 56655544344578999999988876554432 23344445555556667788888888887764433322222222211
Q ss_pred Hhhhc-----CCC---ChhhHHHHHHHHHhcCChhHHHHHHHHHHhC--C----CccCHHhHHHHHHHHHhCCCCHHHHH
Q 004470 176 YTYKD-----WGS---DPHVFDIFFQVLVEARKLNEARKLFEKLLNY--G----LVISVDSCNLFLSRLSNTCDGLRMVV 241 (751)
Q Consensus 176 ~~~~~-----~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--g----~~p~~~~~~~ll~~l~~~~~~~~~a~ 241 (751)
-..+. .+. +..-+-..++.|-++|-+..|++.|..+... - ...+..+ +.+-+ ..-.++.+.
T Consensus 589 ~~aPqVADAILgN~mFtHyDra~IAqLCEKAGL~qraLehytDl~DIKR~vVhth~L~pEw---Lv~yF--g~lsve~s~ 663 (1666)
T KOG0985|consen 589 VHAPQVADAILGNDMFTHYDRAEIAQLCEKAGLLQRALEHYTDLYDIKRVVVHTHLLNPEW---LVNYF--GSLSVEDSL 663 (1666)
T ss_pred ccchHHHHHHHhccccccccHHHHHHHHHhcchHHHHHHhcccHHHHHHHHHHhccCCHHH---HHHHH--HhcCHHHHH
Confidence 10000 011 1112457889999999999999888766321 0 0111111 11112 234578889
Q ss_pred HHHHhchhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc-----------CCCCCHHHHHHHHHHHHhcCCHHHH
Q 004470 242 KSFTEFPELGICWNTASYNIMIHCLCRFGKIKEAHLLLLQMELR-----------GCSPDVVSFSTIINGYCYLGELQRV 310 (751)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-----------g~~p~~~~~~~li~~~~~~g~~~~A 310 (751)
+.+..|...++..|..+.-.+..-|+..=-.+.-+++|+..... ++.-|....-..|.+.|+.|++.+.
T Consensus 664 eclkaml~~NirqNlQi~VQvatky~eqlg~~~li~lFE~fks~eGL~yfLgSivn~seDpevh~KYIqAA~kt~QikEv 743 (1666)
T KOG0985|consen 664 ECLKAMLSANIRQNLQIVVQVATKYHEQLGAQALIELFESFKSYEGLYYFLGSIVNFSEDPEVHFKYIQAACKTGQIKEV 743 (1666)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHhCHHHHHHHHHhhccchhHHHHHHHHhccccCchHHHHHHHHHHhhccHHHH
Confidence 99999988888878888777888888877778888888876542 2344555566788999999998888
Q ss_pred HHHHHHH------------HHCCC---CC-----CcccHHHHHHHHHhcCCHHHHHHHH-------------HHHHHCCC
Q 004470 311 LKLIEEM------------QIKGL---KP-----NPYTYNSVVRLLCKTSKVVEAETIL-------------REMMNQGI 357 (751)
Q Consensus 311 ~~~~~~m------------~~~g~---~p-----~~~~~~~li~~~~~~g~~~~A~~~~-------------~~m~~~g~ 357 (751)
.++-++- ++..+ .| |.+.+..=+-.|.-.++..+-++++ ..++...+
T Consensus 744 ERicresn~YdpErvKNfLkeAkL~DqlPLiiVCDRf~fVhdlvlYLyrnn~~kyIE~yVQkvNps~~p~VvG~LLD~dC 823 (1666)
T KOG0985|consen 744 ERICRESNCYDPERVKNFLKEAKLTDQLPLIIVCDRFDFVHDLVLYLYRNNLQKYIEIYVQKVNPSRTPQVVGALLDVDC 823 (1666)
T ss_pred HHHHhccccCCHHHHHHHHHhccccccCceEEEecccccHHHHHHHHHHhhHHHHHHHHHhhcCCcccchhhhhhhcCCC
Confidence 7766542 12111 11 1111111111122222222222222 22222211
Q ss_pred CCCHHHH-------------HHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHH-HH---HHH
Q 004470 358 VPDNVIY-------------TTLIDGFCKMGNVAAAYRLFDEMRGLNIIPDLLTYTAIICGFCLTGKMVEA-EK---LFH 420 (751)
Q Consensus 358 ~p~~~~~-------------~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A-~~---~~~ 420 (751)
+.... .-|+.-.-|.+++.--...++...+.|.. |..++|.|...|...++-.+- ++ .|+
T Consensus 824 --~E~~ik~Li~~v~gq~~~deLv~EvEkRNRLklLlp~LE~~i~eG~~-d~a~hnAlaKIyIDSNNnPE~fLkeN~yYD 900 (1666)
T KOG0985|consen 824 --SEDFIKNLILSVRGQFPVDELVEEVEKRNRLKLLLPWLESLIQEGSQ-DPATHNALAKIYIDSNNNPERFLKENPYYD 900 (1666)
T ss_pred --cHHHHHHHHHHHhccCChHHHHHHHHhhhhHHHHHHHHHHHHhccCc-chHHHhhhhheeecCCCChHHhcccCCcch
Confidence 11111 12233344566666667777888888877 888999888777655432221 10 011
Q ss_pred HH------HH-----------CCC--------CCCHHHHHHHHHHHHHcCChh---HH--------HHHHHHHHhCCCC-
Q 004470 421 EM------LG-----------RGL--------EPDEIVYTALIDGYCKAGGMK---KA--------FSLHNNMVHMRLT- 463 (751)
Q Consensus 421 ~m------~~-----------~~~--------~p~~~~~~~li~~~~~~g~~~---~A--------~~~~~~~~~~~~~- 463 (751)
.. .+ +|. .-....|....+...+..+.+ +. ..+.++....+++
T Consensus 901 s~vVGkYCEKRDP~lA~vaYerGqcD~elI~vcNeNSlfK~~aRYlv~R~D~~LW~~VL~e~n~~rRqLiDqVv~tal~E 980 (1666)
T KOG0985|consen 901 SKVVGKYCEKRDPHLACVAYERGQCDLELINVCNENSLFKSQARYLVERSDPDLWAKVLNEENPYRRQLIDQVVQTALPE 980 (1666)
T ss_pred hhHHhhhhcccCCceEEEeecccCCcHHHHHhcCchhHHHHHHHHHHhccChHHHHHHHhccChHHHHHHHHHHHhcCCc
Confidence 00 00 110 011122333344444443322 22 2344555544332
Q ss_pred -CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 004470 464 -PNVVTYTALADGLCKSGELETANELLHEMCRKGLQ--LNIYTYNSIVNGLCKAGNILQAVKLMEDMEVAGFHPDTFTYT 540 (751)
Q Consensus 464 -~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 540 (751)
.|+...+.-+.++...+-..+-+++++++.-.+-. -+...-|.|+-... .-+.....+..+++...+ .|+..
T Consensus 981 ~~dPe~vS~tVkAfMtadLp~eLIELLEKIvL~~S~Fse~~nLQnLLiLtAi-kad~trVm~YI~rLdnyD-a~~ia--- 1055 (1666)
T KOG0985|consen 981 TQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSENRNLQNLLILTAI-KADRTRVMEYINRLDNYD-APDIA--- 1055 (1666)
T ss_pred cCChHHHHHHHHHHHhcCCcHHHHHHHHHHhcCCcccccchhhhhhHHHHHh-hcChHHHHHHHHHhccCC-chhHH---
Confidence 34555566677777778888888888877643211 11112222222222 223344444555444332 12211
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhC---------------------CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 004470 541 TIMDAYCKSGEMVKAHELLRDMLDK---------------------GLQPSVVTFNVLMNGFCMSGMIEDGEKLLKWMLE 599 (751)
Q Consensus 541 ~li~~~~~~g~~~~A~~~~~~~~~~---------------------~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~~~~ 599 (751)
......+-+++|..+|+..-.. .-...+..|..+..+-.+.|...+|++-|-+.
T Consensus 1056 ---~iai~~~LyEEAF~ifkkf~~n~~A~~VLie~i~~ldRA~efAe~~n~p~vWsqlakAQL~~~~v~dAieSyika-- 1130 (1666)
T KOG0985|consen 1056 ---EIAIENQLYEEAFAIFKKFDMNVSAIQVLIENIGSLDRAYEFAERCNEPAVWSQLAKAQLQGGLVKDAIESYIKA-- 1130 (1666)
T ss_pred ---HHHhhhhHHHHHHHHHHHhcccHHHHHHHHHHhhhHHHHHHHHHhhCChHHHHHHHHHHHhcCchHHHHHHHHhc--
Confidence 1112222233333333221100 00113345666666666666666666555332
Q ss_pred cCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH
Q 004470 600 KGLKPNAATYNPLIKQHCLRNDMRTTAKIYKGMCAQGITPDGNTYNILLQGHCKARNMKEAWFLHKEMVQKGFNLTTSSY 679 (751)
Q Consensus 600 ~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~ 679 (751)
.|...|..+++...+.|.+++-.+++....++.-+|...+ .||-+|++.+++.+-.+++. -|+....
T Consensus 1131 ----dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id~--eLi~AyAkt~rl~elE~fi~-------gpN~A~i 1197 (1666)
T KOG0985|consen 1131 ----DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYIDS--ELIFAYAKTNRLTELEEFIA-------GPNVANI 1197 (1666)
T ss_pred ----CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccchH--HHHHHHHHhchHHHHHHHhc-------CCCchhH
Confidence 2555666666666667777776666666666555554443 56666666666655443321 2455555
Q ss_pred HHHHHHHHhcCCHHHHHHHHHH
Q 004470 680 NALIKGFLKRKKYLEARELFEE 701 (751)
Q Consensus 680 ~~l~~~~~~~g~~~~A~~~~~~ 701 (751)
..+++-|...|.++.|.-+|..
T Consensus 1198 ~~vGdrcf~~~~y~aAkl~y~~ 1219 (1666)
T KOG0985|consen 1198 QQVGDRCFEEKMYEAAKLLYSN 1219 (1666)
T ss_pred HHHhHHHhhhhhhHHHHHHHHH
Confidence 5666666666666666555544
No 70
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.37 E-value=4.9e-08 Score=95.64 Aligned_cols=293 Identities=13% Similarity=0.040 Sum_probs=213.8
Q ss_pred HHHhcCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHH
Q 004470 405 GFCLTGKMVEAEKLFHEMLGR-GLEPDEIVYTALIDGYCKAGGMKKAFSLHNNMVHMRLTPNVVTYTALADGLCKSGELE 483 (751)
Q Consensus 405 ~~~~~g~~~~A~~~~~~m~~~-~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 483 (751)
+.|-.++...|...+-.+... -++.|+.....+.+.+...|+.++|...|+.....++. ++.......-.+.+.|+++
T Consensus 205 Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy-~i~~MD~Ya~LL~~eg~~e 283 (564)
T KOG1174|consen 205 AQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPD-NVEAMDLYAVLLGQEGGCE 283 (564)
T ss_pred HHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChh-hhhhHHHHHHHHHhccCHh
Confidence 344456655555555444333 25557788899999999999999999999998765321 2222333344567788888
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 004470 484 TANELLHEMCRKGLQLNIYTYNSIVNGLCKAGNILQAVKLMEDMEVAGFHPDTFTYTTIMDAYCKSGEMVKAHELLRDML 563 (751)
Q Consensus 484 ~A~~l~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 563 (751)
....+...+.... .-....|-.-+..+...++++.|+.+-++.+..+ +.+...|-.-...+...|++++|.-.|+..+
T Consensus 284 ~~~~L~~~Lf~~~-~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~-~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq 361 (564)
T KOG1174|consen 284 QDSALMDYLFAKV-KYTASHWFVHAQLLYDEKKFERALNFVEKCIDSE-PRNHEALILKGRLLIALERHTQAVIAFRTAQ 361 (564)
T ss_pred hHHHHHHHHHhhh-hcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccC-cccchHHHhccHHHHhccchHHHHHHHHHHH
Confidence 8888888776542 1234445444555667788999999999888765 5566677667778889999999999999888
Q ss_pred hCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhhHHHHH-HHHHH-cCCHHHHHHHHHHHHHCCCCCC-
Q 004470 564 DKGLQPSVVTFNVLMNGFCMSGMIEDGEKLLKWMLEKGLKPNAATYNPLI-KQHCL-RNDMRTTAKIYKGMCAQGITPD- 640 (751)
Q Consensus 564 ~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~g~~p~~~~~~~l~-~~~~~-~g~~~~A~~~~~~m~~~g~~p~- 640 (751)
... +-+..+|..|+..|...|++.+|.-+-+...+. ...+..+...+. ..+.- -.--++|.+++++.++ +.|+
T Consensus 362 ~La-p~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~--~~P~Y 437 (564)
T KOG1174|consen 362 MLA-PYRLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLK--INPIY 437 (564)
T ss_pred hcc-hhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHhhhc--cCCcc
Confidence 753 457889999999999999999998888777664 333555555442 22222 2234788899988877 4566
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 004470 641 GNTYNILLQGHCKARNMKEAWFLHKEMVQKGFNLTTSSYNALIKGFLKRKKYLEARELFEEMRRGG 706 (751)
Q Consensus 641 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 706 (751)
....+.+...+...|..++++.++++.+.. .||....+.|++.+...+.+++|.+.|..++..+
T Consensus 438 ~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~--~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~d 501 (564)
T KOG1174|consen 438 TPAVNLIAELCQVEGPTKDIIKLLEKHLII--FPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQD 501 (564)
T ss_pred HHHHHHHHHHHHhhCccchHHHHHHHHHhh--ccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC
Confidence 445677788888999999999999998864 5688899999999999999999999999998854
No 71
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.36 E-value=2.8e-08 Score=106.06 Aligned_cols=295 Identities=16% Similarity=0.114 Sum_probs=194.6
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhCCCccCHHhHHHHHHHHHhCCCCHHHHHHHHHhchhcCCCcCHHHHHHHHHHHHhc
Q 004470 190 IFFQVLVEARKLNEARKLFEKLLNYGLVISVDSCNLFLSRLSNTCDGLRMVVKSFTEFPELGICWNTASYNIMIHCLCRF 269 (751)
Q Consensus 190 ~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 269 (751)
-.+.++...|++++|++.+..-.+. -+|...+.-..+.++...|+.++|..+|..+++.+|. |..-|..+..+..-.
T Consensus 9 Y~~~il~e~g~~~~AL~~L~~~~~~--I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPd-n~~Yy~~L~~~~g~~ 85 (517)
T PF12569_consen 9 YKNSILEEAGDYEEALEHLEKNEKQ--ILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPD-NYDYYRGLEEALGLQ 85 (517)
T ss_pred HHHHHHHHCCCHHHHHHHHHhhhhh--CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHhhh
Confidence 3456778899999999999876554 6888888877888877889999999999999998765 666666777666333
Q ss_pred C-----CHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHH-HHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCHH
Q 004470 270 G-----KIKEAHLLLLQMELRGCSPDVVSFSTIINGYCYLGELQ-RVLKLIEEMQIKGLKPNPYTYNSVVRLLCKTSKVV 343 (751)
Q Consensus 270 g-----~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~-~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~ 343 (751)
. +.+...++|+++...- |.......+.-.+..-.+++ .+...+..+..+|++ .+|+.|-..|....+.+
T Consensus 86 ~~~~~~~~~~~~~~y~~l~~~y--p~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvP---slF~~lk~Ly~d~~K~~ 160 (517)
T PF12569_consen 86 LQLSDEDVEKLLELYDELAEKY--PRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVP---SLFSNLKPLYKDPEKAA 160 (517)
T ss_pred cccccccHHHHHHHHHHHHHhC--ccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCc---hHHHHHHHHHcChhHHH
Confidence 2 5677788888876643 33333333322222222333 345556666777754 35666666666555555
Q ss_pred HHHHHHHHHHHC----C----------CCCCH--HHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 004470 344 EAETILREMMNQ----G----------IVPDN--VIYTTLIDGFCKMGNVAAAYRLFDEMRGLNIIPDLLTYTAIICGFC 407 (751)
Q Consensus 344 ~A~~~~~~m~~~----g----------~~p~~--~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~ 407 (751)
-..+++...... | -+|.. +++..+...|...|++++|++.+++..+..+. .+..|..-...+-
T Consensus 161 ~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt-~~ely~~KarilK 239 (517)
T PF12569_consen 161 IIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPT-LVELYMTKARILK 239 (517)
T ss_pred HHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC-cHHHHHHHHHHHH
Confidence 555666655432 1 12333 35566677788888888888888888776432 3566777778888
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHH------HH--HHHHHHHHhc
Q 004470 408 LTGKMVEAEKLFHEMLGRGLEPDEIVYTALIDGYCKAGGMKKAFSLHNNMVHMRLTPNVV------TY--TALADGLCKS 479 (751)
Q Consensus 408 ~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~------~~--~~li~~~~~~ 479 (751)
+.|++++|.+.++....... -|...-+-.+..+.+.|+.++|..++....+.+..|-.. .| .....+|.+.
T Consensus 240 h~G~~~~Aa~~~~~Ar~LD~-~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~ 318 (517)
T PF12569_consen 240 HAGDLKEAAEAMDEARELDL-ADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQ 318 (517)
T ss_pred HCCCHHHHHHHHHHHHhCCh-hhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHH
Confidence 88888888888888776632 255566666777788888888888887776655322211 11 2345667777
Q ss_pred CCHHHHHHHHHHHHH
Q 004470 480 GELETANELLHEMCR 494 (751)
Q Consensus 480 g~~~~A~~l~~~m~~ 494 (751)
|++..|++-|..+.+
T Consensus 319 ~~~~~ALk~~~~v~k 333 (517)
T PF12569_consen 319 GDYGLALKRFHAVLK 333 (517)
T ss_pred hhHHHHHHHHHHHHH
Confidence 777777776666554
No 72
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.35 E-value=1.1e-07 Score=100.80 Aligned_cols=434 Identities=12% Similarity=0.018 Sum_probs=224.8
Q ss_pred CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-cccHHH
Q 004470 253 CWNTASYNIMIHCLCRFGKIKEAHLLLLQMELRGCSPDVVSFSTIINGYCYLGELQRVLKLIEEMQIKGLKPN-PYTYNS 331 (751)
Q Consensus 253 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~ 331 (751)
..|...|..|.-++.+.|+++.+.+.|++.... +.-....|+.+...|...|.-..|..++++-......|+ ...+-.
T Consensus 320 qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~-~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~Lm 398 (799)
T KOG4162|consen 320 QNDAAIFDHLTFALSRCGQFEVLAEQFEQALPF-SFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLLM 398 (799)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHh-hhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHHH
Confidence 345666666666666666666666666665432 223445566666666666666666666665544322232 222222
Q ss_pred HHHHHH-hcCCHHHHHHHHHHHHHC--CC--CCCHHHHHHHHHHHHHc-----------CCHHHHHHHHHHHHhCCCCCC
Q 004470 332 VVRLLC-KTSKVVEAETILREMMNQ--GI--VPDNVIYTTLIDGFCKM-----------GNVAAAYRLFDEMRGLNIIPD 395 (751)
Q Consensus 332 li~~~~-~~g~~~~A~~~~~~m~~~--g~--~p~~~~~~~li~~~~~~-----------g~~~~A~~~~~~m~~~~~~p~ 395 (751)
.-+.|. +.+.+++++..-.+..+. |. ......|..+.-+|... -...++++.+++..+.+.. |
T Consensus 399 asklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~-d 477 (799)
T KOG4162|consen 399 ASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPT-D 477 (799)
T ss_pred HHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCC-C
Confidence 222222 234455555544444431 10 11222333333333211 1133445555555444332 2
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 004470 396 LLTYTAIICGFCLTGKMVEAEKLFHEMLGRGLEPDEIVYTALIDGYCKAGGMKKAFSLHNNMVHMRLTPNVVTYTALADG 475 (751)
Q Consensus 396 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~ 475 (751)
......+.--|+..++++.|.+..++.++-+-..+...|..|.-.+...+++.+|+.+.+...+.-. -|......-+..
T Consensus 478 p~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~-~N~~l~~~~~~i 556 (799)
T KOG4162|consen 478 PLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFG-DNHVLMDGKIHI 556 (799)
T ss_pred chHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhh-hhhhhchhhhhh
Confidence 1111122223444555555655555555554344555555555555555555555555555443210 011111111222
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC--CCCCCHHHHHHHHHHHHHcCCHH
Q 004470 476 LCKSGELETANELLHEMCRKGLQLNIYTYNSIVNGLCKAGNILQAVKLMEDMEVA--GFHPDTFTYTTIMDAYCKSGEMV 553 (751)
Q Consensus 476 ~~~~g~~~~A~~l~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~~li~~~~~~g~~~ 553 (751)
-..-++.++++.....+..-- + +... ....++-....+....+.-. .......++..+.......+...
T Consensus 557 ~~~~~~~e~~l~t~~~~L~~w-e-~~~~-------~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~ 627 (799)
T KOG4162|consen 557 ELTFNDREEALDTCIHKLALW-E-AEYG-------VQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSA 627 (799)
T ss_pred hhhcccHHHHHHHHHHHHHHH-H-hhhh-------HhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhc
Confidence 223444444444444433210 0 0000 00111111111111111100 00111222222222111111000
Q ss_pred HHHHHHHHHHhCCC--CCC------HHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHHcCCHHHH
Q 004470 554 KAHELLRDMLDKGL--QPS------VVTFNVLMNGFCMSGMIEDGEKLLKWMLEKGLKPNAATYNPLIKQHCLRNDMRTT 625 (751)
Q Consensus 554 ~A~~~~~~~~~~~~--~p~------~~~~~~li~~~~~~g~~~~A~~l~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A 625 (751)
..... +..... .|+ ...|......+.+.++.++|...+.+..... ......|......+...|..++|
T Consensus 628 ~se~~---Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~-~l~~~~~~~~G~~~~~~~~~~EA 703 (799)
T KOG4162|consen 628 GSELK---LPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKID-PLSASVYYLRGLLLEVKGQLEEA 703 (799)
T ss_pred ccccc---cCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcc-hhhHHHHHHhhHHHHHHHhhHHH
Confidence 00000 111111 122 2345566777888899999998888887652 33556677777778889999999
Q ss_pred HHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHH--HHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 004470 626 AKIYKGMCAQGITP-DGNTYNILLQGHCKARNMKEAWF--LHKEMVQKGFNLTTSSYNALIKGFLKRKKYLEARELFEEM 702 (751)
Q Consensus 626 ~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~--~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 702 (751)
.+.|...... .| ++.+...+...+.+.|+..-|.. ++..+.+.++. +...|..++..+-+.|+.++|.+.|..+
T Consensus 704 ~~af~~Al~l--dP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~-n~eaW~~LG~v~k~~Gd~~~Aaecf~aa 780 (799)
T KOG4162|consen 704 KEAFLVALAL--DPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPL-NHEAWYYLGEVFKKLGDSKQAAECFQAA 780 (799)
T ss_pred HHHHHHHHhc--CCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHccchHHHHHHHHHH
Confidence 9999998874 45 46778899999999998887777 99999998876 8999999999999999999999999999
Q ss_pred HHC
Q 004470 703 RRG 705 (751)
Q Consensus 703 ~~~ 705 (751)
.+.
T Consensus 781 ~qL 783 (799)
T KOG4162|consen 781 LQL 783 (799)
T ss_pred Hhh
Confidence 874
No 73
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.34 E-value=5.3e-08 Score=104.04 Aligned_cols=129 Identities=23% Similarity=0.244 Sum_probs=80.4
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 004470 433 VYTALIDGYCKAGGMKKAFSLHNNMVHMRLTPNVVTYTALADGLCKSGELETANELLHEMCRKGLQLNIYTYNSIVNGLC 512 (751)
Q Consensus 433 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~~~~li~~~~ 512 (751)
++..+...|...|++++|+.+.++.++..+. .+..|..-...+-..|++++|.+.++.....+.. |...-+-.+..+.
T Consensus 196 ~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt-~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~-DRyiNsK~aKy~L 273 (517)
T PF12569_consen 196 TLYFLAQHYDYLGDYEKALEYIDKAIEHTPT-LVELYMTKARILKHAGDLKEAAEAMDEARELDLA-DRYINSKCAKYLL 273 (517)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChh-hHHHHHHHHHHHH
Confidence 3445556666677777777777777665422 3556666677777777777777777777666443 5555566666667
Q ss_pred HcCCHHHHHHHHHHHHHCCCCCCH--------HHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 004470 513 KAGNILQAVKLMEDMEVAGFHPDT--------FTYTTIMDAYCKSGEMVKAHELLRDML 563 (751)
Q Consensus 513 ~~g~~~~A~~~~~~~~~~~~~~~~--------~~~~~li~~~~~~g~~~~A~~~~~~~~ 563 (751)
+.|++++|.+++....+.+..|.. ........+|.+.|++..|++.|..+.
T Consensus 274 Ra~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~ 332 (517)
T PF12569_consen 274 RAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVL 332 (517)
T ss_pred HCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 777777777777776655432221 112334566777777777766665554
No 74
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.33 E-value=5.6e-10 Score=109.62 Aligned_cols=201 Identities=16% Similarity=0.058 Sum_probs=133.9
Q ss_pred ChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCccCHHhHHHHHHHHHhCCCCHHHHHHHHHhchhcCCCcCHHHHHHHH
Q 004470 184 DPHVFDIFFQVLVEARKLNEARKLFEKLLNYGLVISVDSCNLFLSRLSNTCDGLRMVVKSFTEFPELGICWNTASYNIMI 263 (751)
Q Consensus 184 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li 263 (751)
.+..+..++..+...|++++|.+.++++++. .|+.......++.++...|++++|.+.|+++.+..+. +...+..+.
T Consensus 30 ~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~~~ 106 (234)
T TIGR02521 30 AAKIRVQLALGYLEQGDLEVAKENLDKALEH--DPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPN-NGDVLNNYG 106 (234)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CHHHHHHHH
Confidence 3567788899999999999999999998876 4655555555566665678888888888888776544 556677777
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCH
Q 004470 264 HCLCRFGKIKEAHLLLLQMELRGC-SPDVVSFSTIINGYCYLGELQRVLKLIEEMQIKGLKPNPYTYNSVVRLLCKTSKV 342 (751)
Q Consensus 264 ~~~~~~g~~~~A~~~~~~m~~~g~-~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~ 342 (751)
..+...|++++|.+.|++...... ......+..+...+...|++++|.+.+++..+.. +.+...+..+...+...|++
T Consensus 107 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~ 185 (234)
T TIGR02521 107 TFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQID-PQRPESLLELAELYYLRGQY 185 (234)
T ss_pred HHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCChHHHHHHHHHHHHcCCH
Confidence 777888888888888877765321 1223445556666667777777777777766552 22344566666666666666
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 004470 343 VEAETILREMMNQGIVPDNVIYTTLIDGFCKMGNVAAAYRLFDEMRG 389 (751)
Q Consensus 343 ~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 389 (751)
++|...+++.... .+.+...+..++..+...|+.++|..+.+.+..
T Consensus 186 ~~A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 231 (234)
T TIGR02521 186 KDARAYLERYQQT-YNQTAESLWLGIRIARALGDVAAAQRYGAQLQK 231 (234)
T ss_pred HHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 6666666666654 233445555555666666666666666555543
No 75
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.32 E-value=1.6e-09 Score=113.88 Aligned_cols=237 Identities=23% Similarity=0.234 Sum_probs=152.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHC-----C-CCCCHHH-HHHHHHHHHHcCCHHHHHHHHHHHHhC-----CC--C
Q 004470 503 TYNSIVNGLCKAGNILQAVKLMEDMEVA-----G-FHPDTFT-YTTIMDAYCKSGEMVKAHELLRDMLDK-----GL--Q 568 (751)
Q Consensus 503 ~~~~li~~~~~~g~~~~A~~~~~~~~~~-----~-~~~~~~~-~~~li~~~~~~g~~~~A~~~~~~~~~~-----~~--~ 568 (751)
+...+...|...|+++.|+.+++..... | ..|.+.+ .+.+...|...+++++|..+|+++... |- +
T Consensus 201 ~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~ 280 (508)
T KOG1840|consen 201 TLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHP 280 (508)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCH
Confidence 3333555555555555555555554332 1 0122222 233556667777777777777776532 21 1
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHc-----CC-CCCH-hhHHHHHHHHHHcCCHHHHHHHHHHHHHC---CCC
Q 004470 569 PSVVTFNVLMNGFCMSGMIEDGEKLLKWMLEK-----GL-KPNA-ATYNPLIKQHCLRNDMRTTAKIYKGMCAQ---GIT 638 (751)
Q Consensus 569 p~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~-----g~-~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~m~~~---g~~ 638 (751)
--..+++.|..+|.+.|++++|..+++...+. |. .|+. ..++.+...++..+++++|..++.+..+. -+.
T Consensus 281 ~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g 360 (508)
T KOG1840|consen 281 AVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPG 360 (508)
T ss_pred HHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhcc
Confidence 12345666666777777777777777666532 11 1222 23556666778888888888888766541 112
Q ss_pred CC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-----CC-CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH---
Q 004470 639 PD----GNTYNILLQGHCKARNMKEAWFLHKEMVQK-----GF-NL-TTSSYNALIKGFLKRKKYLEARELFEEMRR--- 704 (751)
Q Consensus 639 p~----~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-----~~-~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--- 704 (751)
++ ..+++.|...|.+.|++++|.++++++++. |- .+ ....++.|...|.+.+++.+|.++|++...
T Consensus 361 ~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~ 440 (508)
T KOG1840|consen 361 EDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMK 440 (508)
T ss_pred ccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHH
Confidence 22 456889999999999999999999988863 11 11 245778888999999999999988887654
Q ss_pred -CC--CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 004470 705 -GG--LVADREIYYFFVDINFEEGNTEITLELCDAAIE 739 (751)
Q Consensus 705 -~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 739 (751)
.| .+....+|..|+..|.+.|++|+|.++.+.++.
T Consensus 441 ~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~ 478 (508)
T KOG1840|consen 441 LCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLN 478 (508)
T ss_pred HhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 22 122346788899999999999999999988873
No 76
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.31 E-value=8.3e-08 Score=94.08 Aligned_cols=294 Identities=10% Similarity=-0.027 Sum_probs=218.5
Q ss_pred HHHcCChhHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHHcCCHH
Q 004470 441 YCKAGGMKKAFSLHNNMVHM-RLTPNVVTYTALADGLCKSGELETANELLHEMCRKGLQLNIY-TYNSIVNGLCKAGNIL 518 (751)
Q Consensus 441 ~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~-~~~~li~~~~~~g~~~ 518 (751)
.+-.++...|...+-.+... -++-|+.....+...+...|+.++|...|+.....+ |+.. ......-.+.+.|+.+
T Consensus 206 q~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~d--py~i~~MD~Ya~LL~~eg~~e 283 (564)
T KOG1174|consen 206 QMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCAN--PDNVEAMDLYAVLLGQEGGCE 283 (564)
T ss_pred HHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCC--hhhhhhHHHHHHHHHhccCHh
Confidence 34455555555554444332 355688889999999999999999999999987652 2222 2222233456788898
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 004470 519 QAVKLMEDMEVAGFHPDTFTYTTIMDAYCKSGEMVKAHELLRDMLDKGLQPSVVTFNVLMNGFCMSGMIEDGEKLLKWML 598 (751)
Q Consensus 519 ~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~~~ 598 (751)
+...+...+.... .-....|..-+.......++..|+.+-++.++.+ +.+...|-.=...+...|+.++|.-.|+...
T Consensus 284 ~~~~L~~~Lf~~~-~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~-~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq 361 (564)
T KOG1174|consen 284 QDSALMDYLFAKV-KYTASHWFVHAQLLYDEKKFERALNFVEKCIDSE-PRNHEALILKGRLLIALERHTQAVIAFRTAQ 361 (564)
T ss_pred hHHHHHHHHHhhh-hcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccC-cccchHHHhccHHHHhccchHHHHHHHHHHH
Confidence 8888888876542 2334444444555567789999999999988764 4466666666677888999999999999988
Q ss_pred HcCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH-HHHHh-cCCHHHHHHHHHHHHHCCCCCCH
Q 004470 599 EKGLKPNAATYNPLIKQHCLRNDMRTTAKIYKGMCAQGITPDGNTYNILL-QGHCK-ARNMKEAWFLHKEMVQKGFNLTT 676 (751)
Q Consensus 599 ~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li-~~~~~-~g~~~~A~~~~~~~~~~~~~p~~ 676 (751)
... +-+...|..|+.+|...|++.+|.-+-+...+. ...+..+...+. ..+.- -.--++|.+++++.+...+. -.
T Consensus 362 ~La-p~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~-Y~ 438 (564)
T KOG1174|consen 362 MLA-PYRLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPI-YT 438 (564)
T ss_pred hcc-hhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccCCc-cH
Confidence 752 236789999999999999999999888777663 344666665553 33332 22357899999988765432 23
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCC
Q 004470 677 SSYNALIKGFLKRKKYLEARELFEEMRRGGLVADREIYYFFVDINFEEGNTEITLELCDAAIECYLV 743 (751)
Q Consensus 677 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 743 (751)
...+.++..+...|++++++.++++.+.. .||......|++.+...+.+++|.+.|..++...+.
T Consensus 439 ~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~--~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~ 503 (564)
T KOG1174|consen 439 PAVNLIAELCQVEGPTKDIIKLLEKHLII--FPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQDPK 503 (564)
T ss_pred HHHHHHHHHHHhhCccchHHHHHHHHHhh--ccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCcc
Confidence 46678888899999999999999999874 789999999999999999999999999999877654
No 77
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.30 E-value=1.3e-10 Score=109.88 Aligned_cols=230 Identities=12% Similarity=0.049 Sum_probs=151.8
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhCCCccCHHhHHHHHHHHHhCCCCHHHHHHHHHhchhcCCCcCHHHHHHHHHHHHh
Q 004470 189 DIFFQVLVEARKLNEARKLFEKLLNYGLVISVDSCNLFLSRLSNTCDGLRMVVKSFTEFPELGICWNTASYNIMIHCLCR 268 (751)
Q Consensus 189 ~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 268 (751)
.-++++|.+.|++.+|.+.|+..++. .|-..|+.. |+..+..-.+.+.|+.+|.+-.+.-| .|+....-..+.+-.
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfll-LskvY~ridQP~~AL~~~~~gld~fP-~~VT~l~g~ARi~ea 302 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLL-LSKVYQRIDQPERALLVIGEGLDSFP-FDVTYLLGQARIHEA 302 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHH-HHHHHHHhccHHHHHHHHhhhhhcCC-chhhhhhhhHHHHHH
Confidence 45677777777777777777777766 333334333 33344456677777777777766532 244444556677777
Q ss_pred cCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCHHHHHHH
Q 004470 269 FGKIKEAHLLLLQMELRGCSPDVVSFSTIINGYCYLGELQRVLKLIEEMQIKGLKPNPYTYNSVVRLLCKTSKVVEAETI 348 (751)
Q Consensus 269 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~ 348 (751)
.++.++|.++|++..+... .++.+..++..+|.-.++.+-|+..++++.+.|+. ++..|+.+.-+|.-.+++|-++.-
T Consensus 303 m~~~~~a~~lYk~vlk~~~-~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~L~s 380 (478)
T KOG1129|consen 303 MEQQEDALQLYKLVLKLHP-INVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLVLPS 380 (478)
T ss_pred HHhHHHHHHHHHHHHhcCC-ccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhhHHH
Confidence 7777777777777665432 45566666666777777777777777777777765 667777777777777777777777
Q ss_pred HHHHHHCCCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 004470 349 LREMMNQGIVPD--NVIYTTLIDGFCKMGNVAAAYRLFDEMRGLNIIPDLLTYTAIICGFCLTGKMVEAEKLFHEMLGR 425 (751)
Q Consensus 349 ~~~m~~~g~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 425 (751)
|+..+.---.|+ ..+|..|.....-.||+..|.+.|+-....+.. +...+|.|.-.-.+.|++++|..++......
T Consensus 381 f~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~-h~ealnNLavL~~r~G~i~~Arsll~~A~s~ 458 (478)
T KOG1129|consen 381 FQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQ-HGEALNNLAVLAARSGDILGARSLLNAAKSV 458 (478)
T ss_pred HHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcc-hHHHHHhHHHHHhhcCchHHHHHHHHHhhhh
Confidence 766665422222 245666666666777777777777777665433 5667777777777777777777777766553
No 78
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.29 E-value=1.1e-09 Score=103.71 Aligned_cols=236 Identities=12% Similarity=0.040 Sum_probs=194.0
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 004470 500 NIYTYNSIVNGLCKAGNILQAVKLMEDMEVAGFHPDTFTYTTIMDAYCKSGEMVKAHELLRDMLDKGLQPSVVTFNVLMN 579 (751)
Q Consensus 500 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~ 579 (751)
|-.--+.+..+|.+.|.+.+|.+.++...+. .|-+.||..|-..|.+..++..|+.++.+-++. ++-|+.....+..
T Consensus 222 dwwWk~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~-fP~~VT~l~g~AR 298 (478)
T KOG1129|consen 222 DWWWKQQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS-FPFDVTYLLGQAR 298 (478)
T ss_pred hHHHHHHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc-CCchhhhhhhhHH
Confidence 4444467888999999999999999988876 577888888999999999999999999998876 3445444556677
Q ss_pred HHHhcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 004470 580 GFCMSGMIEDGEKLLKWMLEKGLKPNAATYNPLIKQHCLRNDMRTTAKIYKGMCAQGITPDGNTYNILLQGHCKARNMKE 659 (751)
Q Consensus 580 ~~~~~g~~~~A~~l~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~ 659 (751)
.+...++.++|.++++...+.. ..++....++...|.-.++.+-|..+|++++..|+. ++..|+.+.-+|.-.+++|-
T Consensus 299 i~eam~~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~ 376 (478)
T KOG1129|consen 299 IHEAMEQQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDL 376 (478)
T ss_pred HHHHHHhHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhh
Confidence 7888899999999999988763 335666677777888899999999999999998864 78888888888889999999
Q ss_pred HHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 004470 660 AWFLHKEMVQKGFNLT--TSSYNALIKGFLKRKKYLEARELFEEMRRGGLVADREIYYFFVDINFEEGNTEITLELCDAA 737 (751)
Q Consensus 660 A~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 737 (751)
++.-|++++..--.|+ ..+|..+.......|++.-|.+.|+-++..+ +.+.+.++.|+-.-.+.|+.++|+.+++.+
T Consensus 377 ~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d-~~h~ealnNLavL~~r~G~i~~Arsll~~A 455 (478)
T KOG1129|consen 377 VLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSD-AQHGEALNNLAVLAARSGDILGARSLLNAA 455 (478)
T ss_pred hHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccC-cchHHHHHhHHHHHhhcCchHHHHHHHHHh
Confidence 9999999887644343 4588888888889999999999999988765 556788888888888999999999999987
Q ss_pred HHcC
Q 004470 738 IECY 741 (751)
Q Consensus 738 ~~~~ 741 (751)
....
T Consensus 456 ~s~~ 459 (478)
T KOG1129|consen 456 KSVM 459 (478)
T ss_pred hhhC
Confidence 6654
No 79
>PF13041 PPR_2: PPR repeat family
Probab=99.28 E-value=1e-11 Score=87.70 Aligned_cols=50 Identities=36% Similarity=0.689 Sum_probs=37.0
Q ss_pred cCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh
Q 004470 254 WNTASYNIMIHCLCRFGKIKEAHLLLLQMELRGCSPDVVSFSTIINGYCY 303 (751)
Q Consensus 254 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~ 303 (751)
||+.+||++|++|++.|++++|.++|++|.+.|+.||..||+.+|++||+
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 57777777777777777777777777777777777777777777777764
No 80
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=99.26 E-value=7.9e-07 Score=94.37 Aligned_cols=230 Identities=16% Similarity=0.188 Sum_probs=141.0
Q ss_pred ChhhHHHHHHHHHhcCChhHHHHHHHHHHhC-C--------CccCHHhHHHHHHHHHhCCCCHHHHHHHHHhchhcCCCc
Q 004470 184 DPHVFDIFFQVLVEARKLNEARKLFEKLLNY-G--------LVISVDSCNLFLSRLSNTCDGLRMVVKSFTEFPELGICW 254 (751)
Q Consensus 184 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-g--------~~p~~~~~~~ll~~l~~~~~~~~~a~~~~~~~~~~~~~~ 254 (751)
+-.+|+.|++.+.+..+++-|.-.+..|... | -.|+..... ...+.-..|.+++|..+|++-...
T Consensus 756 S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~e~eak--vAvLAieLgMlEeA~~lYr~ckR~---- 829 (1416)
T KOG3617|consen 756 SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGEEDEAK--VAVLAIELGMLEEALILYRQCKRY---- 829 (1416)
T ss_pred hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCcchhhH--HHHHHHHHhhHHHHHHHHHHHHHH----
Confidence 3468999999999999999999888777432 1 123222222 222223458888999998877654
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHH
Q 004470 255 NTASYNIMIHCLCRFGKIKEAHLLLLQMELRGCSPDVVSFSTIINGYCYLGELQRVLKLIEEMQIKGLKPNPYTYNSVVR 334 (751)
Q Consensus 255 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~ 334 (751)
..|=..|...|.+++|.++-+.-.+- .-..||.....-+-..++.+.|++.|++.. ...++. .+
T Consensus 830 -----DLlNKlyQs~g~w~eA~eiAE~~DRi---HLr~Tyy~yA~~Lear~Di~~AleyyEK~~-------~hafev-~r 893 (1416)
T KOG3617|consen 830 -----DLLNKLYQSQGMWSEAFEIAETKDRI---HLRNTYYNYAKYLEARRDIEAALEYYEKAG-------VHAFEV-FR 893 (1416)
T ss_pred -----HHHHHHHHhcccHHHHHHHHhhccce---ehhhhHHHHHHHHHhhccHHHHHHHHHhcC-------ChHHHH-HH
Confidence 34555677789999998887653221 123466666666777888888888887532 111111 11
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHH
Q 004470 335 LLCKTSKVVEAETILREMMNQGIVPDNVIYTTLIDGFCKMGNVAAAYRLFDEMRGLNIIPDLLTYTAIICGFCLTGKMVE 414 (751)
Q Consensus 335 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~ 414 (751)
.+. .+....++..+.+ .|...|..-...+-..|+++.|+.+|..... |-++++..|-.|+.++
T Consensus 894 mL~--e~p~~~e~Yv~~~------~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D---------~fs~VrI~C~qGk~~k 956 (1416)
T KOG3617|consen 894 MLK--EYPKQIEQYVRRK------RDESLYSWWGQYLESVGEMDAALSFYSSAKD---------YFSMVRIKCIQGKTDK 956 (1416)
T ss_pred HHH--hChHHHHHHHHhc------cchHHHHHHHHHHhcccchHHHHHHHHHhhh---------hhhheeeEeeccCchH
Confidence 110 1112222222222 2344555555555667788888877766543 5666777777777777
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHH
Q 004470 415 AEKLFHEMLGRGLEPDEIVYTALIDGYCKAGGMKKAFSLHNNMV 458 (751)
Q Consensus 415 A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 458 (751)
|-++-++- -|.....-|.+.|-..|++.+|...|.+..
T Consensus 957 Aa~iA~es------gd~AAcYhlaR~YEn~g~v~~Av~FfTrAq 994 (1416)
T KOG3617|consen 957 AARIAEES------GDKAACYHLARMYENDGDVVKAVKFFTRAQ 994 (1416)
T ss_pred HHHHHHhc------ccHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 77665542 255556667777777777777777776654
No 81
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.25 E-value=1.2e-08 Score=107.49 Aligned_cols=236 Identities=24% Similarity=0.251 Sum_probs=156.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHc-----CC-CCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHC-----C--CCC
Q 004470 469 YTALADGLCKSGELETANELLHEMCRK-----GL-QLNIY-TYNSIVNGLCKAGNILQAVKLMEDMEVA-----G--FHP 534 (751)
Q Consensus 469 ~~~li~~~~~~g~~~~A~~l~~~m~~~-----g~-~~~~~-~~~~li~~~~~~g~~~~A~~~~~~~~~~-----~--~~~ 534 (751)
...+...|...|++++|..+++...+. |. .|... ..+.+...|...+++++|..+|+++... | .+.
T Consensus 202 ~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~ 281 (508)
T KOG1840|consen 202 LRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHPA 281 (508)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCHH
Confidence 333555555555555555555544332 11 11221 2334566777777777777777776441 2 111
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-----CC-CCCH-HHHHHHHHHHHhcCChhHHHHHHHHHHHc---CCCC
Q 004470 535 DTFTYTTIMDAYCKSGEMVKAHELLRDMLDK-----GL-QPSV-VTFNVLMNGFCMSGMIEDGEKLLKWMLEK---GLKP 604 (751)
Q Consensus 535 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-----~~-~p~~-~~~~~li~~~~~~g~~~~A~~l~~~~~~~---g~~p 604 (751)
-..+++.|..+|.+.|++++|...+++..+. |. .|.+ ..++.++..++..+++++|..+++...+. -+.+
T Consensus 282 va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~ 361 (508)
T KOG1840|consen 282 VAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGE 361 (508)
T ss_pred HHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccc
Confidence 2345666777788888888877777766431 11 1222 23566677788888999998888877643 1222
Q ss_pred C----HhhHHHHHHHHHHcCCHHHHHHHHHHHHHC-----C-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH----
Q 004470 605 N----AATYNPLIKQHCLRNDMRTTAKIYKGMCAQ-----G-ITP-DGNTYNILLQGHCKARNMKEAWFLHKEMVQ---- 669 (751)
Q Consensus 605 ~----~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~-----g-~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---- 669 (751)
+ ..+++.|...|...|++++|.+++++++.. | ..+ ....++.+...|.+.+++.+|.++|.+...
T Consensus 362 ~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~ 441 (508)
T KOG1840|consen 362 DNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKL 441 (508)
T ss_pred cchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHH
Confidence 2 357888999999999999999999988762 1 122 245678889999999999999999888654
Q ss_pred CCCC-C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004470 670 KGFN-L-TTSSYNALIKGFLKRKKYLEARELFEEMRR 704 (751)
Q Consensus 670 ~~~~-p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 704 (751)
.|+. | ...+|..|+..|...|++++|.++.+....
T Consensus 442 ~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~ 478 (508)
T KOG1840|consen 442 CGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLN 478 (508)
T ss_pred hCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 2332 2 345889999999999999999999888763
No 82
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.25 E-value=1.4e-07 Score=96.87 Aligned_cols=155 Identities=10% Similarity=0.052 Sum_probs=97.6
Q ss_pred CChhHHHHHHHHHHHcCCCCCHhhHHHHHHHH-HHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 004470 585 GMIEDGEKLLKWMLEKGLKPNAATYNPLIKQH-CLRNDMRTTAKIYKGMCAQGITPDGNTYNILLQGHCKARNMKEAWFL 663 (751)
Q Consensus 585 g~~~~A~~l~~~~~~~g~~p~~~~~~~l~~~~-~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~ 663 (751)
+..+.+.++..... +..|....=+.+..+. ++......|.+++...-+....-...+.-..+......|+++.|+++
T Consensus 321 nk~~q~r~~~a~lp--~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~i 398 (652)
T KOG2376|consen 321 NKMDQVRELSASLP--GMSPESLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEI 398 (652)
T ss_pred hhHHHHHHHHHhCC--ccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHH
Confidence 44455555444332 2234433333333333 33335778888888777643222245566677888899999999999
Q ss_pred HH--------HHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC--CCCCC----HHHHHHHHHHHHhcCChhH
Q 004470 664 HK--------EMVQKGFNLTTSSYNALIKGFLKRKKYLEARELFEEMRRG--GLVAD----REIYYFFVDINFEEGNTEI 729 (751)
Q Consensus 664 ~~--------~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~----~~~~~~l~~~~~~~g~~~~ 729 (751)
+. ...+.+.. +.+...+...+.+.++.+.|..++.+++.- .-.+. ..++..++..-.+.|+.++
T Consensus 399 l~~~~~~~~ss~~~~~~~--P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~e 476 (652)
T KOG2376|consen 399 LSLFLESWKSSILEAKHL--PGTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEE 476 (652)
T ss_pred HHHHhhhhhhhhhhhccC--hhHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHH
Confidence 99 55555444 455666777888888877788877777641 11122 2334445555677799999
Q ss_pred HHHHHHHHHHcCCC
Q 004470 730 TLELCDAAIECYLV 743 (751)
Q Consensus 730 A~~~~~~~~~~~~~ 743 (751)
|..+++++++....
T Consensus 477 a~s~leel~k~n~~ 490 (652)
T KOG2376|consen 477 ASSLLEELVKFNPN 490 (652)
T ss_pred HHHHHHHHHHhCCc
Confidence 99999999986543
No 83
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.24 E-value=1e-05 Score=88.15 Aligned_cols=361 Identities=12% Similarity=0.168 Sum_probs=197.8
Q ss_pred chhHHHHHHHhhcCChHHHHHHHHhhhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHcCCCCCchhhhHHHH--HH
Q 004470 96 RSDHLIWVLMDIRSDYRLVLDFFDWACLRREPILEARCIVVQISVAAKDLKTAHGLIHDFWAKPNLDASIAFTHFV--ER 173 (751)
Q Consensus 96 ~~~~~~~~l~~~~~~~~~al~~f~~~~~~~~~~~~~~~~~~~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~--~~ 173 (751)
+.+.++--+...-+||++|++.-..+. -+.--.-+..--..|..+|++++|..+-...-+ .++ ..
T Consensus 329 ~e~~IVpyi~~~LqnpeLal~~A~R~n--LaGAe~Lfv~rFneLfaqG~Y~eAAkvAAsSPr-----------gILRt~~ 395 (1666)
T KOG0985|consen 329 NEQNIVPYITNVLQNPELALRLAVRAN--LAGAENLFVRRFNELFAQGEYEEAAKVAASSPR-----------GILRTPG 395 (1666)
T ss_pred cCcceehhhhccccChHHHHHhhhhcC--CccHHHHHHHHHHHHHhCccHHHHHHHHHhCch-----------hhhcCHH
Confidence 334444444445578999987554331 233333444556778889999999876554211 000 00
Q ss_pred HHHhhhcCC---CChhhHHHHHHHHHhcCChhHHHH--HHHHHHhCC--------CccCHHhHHHHHHHHHhCCCCHHHH
Q 004470 174 LIYTYKDWG---SDPHVFDIFFQVLVEARKLNEARK--LFEKLLNYG--------LVISVDSCNLFLSRLSNTCDGLRMV 240 (751)
Q Consensus 174 l~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~--~~~~~~~~g--------~~p~~~~~~~ll~~l~~~~~~~~~a 240 (751)
-+..+..+| ..+.-......++..+|.++++.. +.+-.+..| ..-+-.+|.-=++-+. +.-+..-|
T Consensus 396 Ti~kFq~V~a~~Gq~sPLLqYFg~LLdqGkLNk~ETLEL~RpVL~Q~RkqLlekWl~EdKLeCSEELGDlV-K~~d~~lA 474 (1666)
T KOG0985|consen 396 TINKFQSVPAQPGQPSPLLQYFGTLLDQGKLNKYETLELCRPVLQQGRKQLLEKWLKEDKLECSEELGDLV-KPYDTTLA 474 (1666)
T ss_pred HHHHHHcCCCCCCCCCcHHHHHHHHHhcccccHHHHHHHHHHHHhhhHHHHHHHHhhhhhhhhhHHhcCcc-ccCCchHH
Confidence 112222222 233334445556666666655442 222222211 0112223333333333 22334456
Q ss_pred HHHHHhchhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 004470 241 VKSFTEFPELGICWNTASYNIMIHCLCRFGKIKEAHLLLLQMELRGCSPDVVSFSTIINGYCYLGELQRVLKLIEEMQIK 320 (751)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 320 (751)
+.+|.++... +.++.+|...|+++++.-.. .+.|..||. -.++....+ -..|.+.++...|.+.
T Consensus 475 L~iYlrAnvp---------~KVi~cfAE~Gqf~KiilY~---kKvGyTPdy---mflLq~l~r-~sPD~~~qFa~~l~Q~ 538 (1666)
T KOG0985|consen 475 LSIYLRANVP---------AKVIQCFAETGQFKKIILYA---KKVGYTPDY---MFLLQQLKR-SSPDQALQFAMMLVQD 538 (1666)
T ss_pred HHHHHHcCCc---------HHHHHHHHHhcchhHHHHHH---HHcCCCccH---HHHHHHHHc-cChhHHHHHHHHhhcc
Confidence 6666555332 56778888899998887765 446777884 455666555 6788888888888774
Q ss_pred CCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-----------------CCCH------------HHHHHHHHHH
Q 004470 321 GLKPNPYTYNSVVRLLCKTSKVVEAETILREMMNQGI-----------------VPDN------------VIYTTLIDGF 371 (751)
Q Consensus 321 g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-----------------~p~~------------~~~~~li~~~ 371 (751)
. |....++.+...+...+....+..++-+.++..- .|++ .-+..+.+.|
T Consensus 539 ~--~~~~die~I~DlFme~N~iQq~TSFLLdaLK~~~Pd~g~LQTrLLE~NL~~aPqVADAILgN~mFtHyDra~IAqLC 616 (1666)
T KOG0985|consen 539 E--EPLADIEQIVDLFMELNLIQQCTSFLLDALKLNSPDEGHLQTRLLEMNLVHAPQVADAILGNDMFTHYDRAEIAQLC 616 (1666)
T ss_pred C--CCcccHHHHHHHHHHHHhhhhhHHHHHHHhcCCChhhhhHHHHHHHHHhccchHHHHHHHhccccccccHHHHHHHH
Confidence 2 2333444555555444444444444333332210 1111 1134566778
Q ss_pred HHcCCHHHHHHHHHHHHhCCCCCCHHHHHHH-----HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC
Q 004470 372 CKMGNVAAAYRLFDEMRGLNIIPDLLTYTAI-----ICGFCLTGKMVEAEKLFHEMLGRGLEPDEIVYTALIDGYCKAGG 446 (751)
Q Consensus 372 ~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l-----i~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~ 446 (751)
.+.|-...|++.+.++.+. . ..+..+.+ +-.|...-.++++.+.++.|+..++..+..+...+..-|+..=.
T Consensus 617 EKAGL~qraLehytDl~DI--K-R~vVhth~L~pEwLv~yFg~lsve~s~eclkaml~~NirqNlQi~VQvatky~eqlg 693 (1666)
T KOG0985|consen 617 EKAGLLQRALEHYTDLYDI--K-RVVVHTHLLNPEWLVNYFGSLSVEDSLECLKAMLSANIRQNLQIVVQVATKYHEQLG 693 (1666)
T ss_pred HhcchHHHHHHhcccHHHH--H-HHHHHhccCCHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhC
Confidence 8889999999888776542 1 12222222 23455556678888888888877777776666666666655555
Q ss_pred hhHHHHHHHHHHhC-----------CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 004470 447 MKKAFSLHNNMVHM-----------RLTPNVVTYTALADGLCKSGELETANELLHE 491 (751)
Q Consensus 447 ~~~A~~~~~~~~~~-----------~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~ 491 (751)
.+..+++|+..... ++..|+.+....|.+.|+.|++.+..++.++
T Consensus 694 ~~~li~lFE~fks~eGL~yfLgSivn~seDpevh~KYIqAA~kt~QikEvERicre 749 (1666)
T KOG0985|consen 694 AQALIELFESFKSYEGLYYFLGSIVNFSEDPEVHFKYIQAACKTGQIKEVERICRE 749 (1666)
T ss_pred HHHHHHHHHhhccchhHHHHHHHHhccccCchHHHHHHHHHHhhccHHHHHHHHhc
Confidence 55555555554321 1334555566677777777777766665543
No 84
>PF13041 PPR_2: PPR repeat family
Probab=99.23 E-value=1.9e-11 Score=86.34 Aligned_cols=50 Identities=50% Similarity=1.047 Sum_probs=36.6
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHh
Q 004470 289 PDVVSFSTIINGYCYLGELQRVLKLIEEMQIKGLKPNPYTYNSVVRLLCK 338 (751)
Q Consensus 289 p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~ 338 (751)
||+++||++|.+|++.|++++|.++|++|.+.|++||..||+.+|++||+
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 66777777777777777777777777777777777777777777777664
No 85
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.21 E-value=5.2e-08 Score=99.19 Aligned_cols=411 Identities=13% Similarity=0.035 Sum_probs=215.0
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcCC
Q 004470 298 INGYCYLGELQRVLKLIEEMQIKGLKPNPYTYNSVVRLLCKTSKVVEAETILREMMNQGIVPD-NVIYTTLIDGFCKMGN 376 (751)
Q Consensus 298 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~ 376 (751)
.++.+..|+++.|+..|-+..... ++|-+-|..-..+|.+.|++++|.+=-.+-.+. .|+ ...|+.+..++.-.|+
T Consensus 9 gnaa~s~~d~~~ai~~~t~ai~l~-p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l--~p~w~kgy~r~Gaa~~~lg~ 85 (539)
T KOG0548|consen 9 GNAAFSSGDFETAIRLFTEAIMLS-PTNHVLYSNRSAAYASLGSYEKALKDATKTRRL--NPDWAKGYSRKGAALFGLGD 85 (539)
T ss_pred HHhhcccccHHHHHHHHHHHHccC-CCccchhcchHHHHHHHhhHHHHHHHHHHHHhc--CCchhhHHHHhHHHHHhccc
Confidence 355667788888888888877764 347777777788888888888877666655554 344 3567777777777888
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC-hhHHHHHHH
Q 004470 377 VAAAYRLFDEMRGLNIIPDLLTYTAIICGFCLTGKMVEAEKLFHEMLGRGLEPDEIVYTALIDGYCKAGG-MKKAFSLHN 455 (751)
Q Consensus 377 ~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~-~~~A~~~~~ 455 (751)
+++|+.-|.+-++.... +...++.+..++ ..+.+. +.. -.++..+..+..--...+. .+.+....-
T Consensus 86 ~~eA~~ay~~GL~~d~~-n~~L~~gl~~a~----~~~~~~-----~~~---~~~p~~~~~l~~~p~t~~~~~~~~~~~~l 152 (539)
T KOG0548|consen 86 YEEAILAYSEGLEKDPS-NKQLKTGLAQAY----LEDYAA-----DQL---FTKPYFHEKLANLPLTNYSLSDPAYVKIL 152 (539)
T ss_pred HHHHHHHHHHHhhcCCc-hHHHHHhHHHhh----hHHHHh-----hhh---ccCcHHHHHhhcChhhhhhhccHHHHHHH
Confidence 88888888877765433 555566666555 111111 100 0111222211110000000 111111111
Q ss_pred HHHhCCCCCCHHHH---HHHHHHHHhcCCHHHH-HHHHHHHH-HcCCCC----------------------CHHHHHHHH
Q 004470 456 NMVHMRLTPNVVTY---TALADGLCKSGELETA-NELLHEMC-RKGLQL----------------------NIYTYNSIV 508 (751)
Q Consensus 456 ~~~~~~~~~~~~~~---~~li~~~~~~g~~~~A-~~l~~~m~-~~g~~~----------------------~~~~~~~li 508 (751)
+....++. ++..| ..++.+.......+.- ...-..+. ..+..| -..-...+.
T Consensus 153 ~~~~~~p~-~l~~~l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lg 231 (539)
T KOG0548|consen 153 EIIQKNPT-SLKLYLNDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELG 231 (539)
T ss_pred HHhhcCcH-hhhcccccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHH
Confidence 11111100 00000 0111111100000000 00000000 000000 112245667
Q ss_pred HHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHH-------HHHHH
Q 004470 509 NGLCKAGNILQAVKLMEDMEVAGFHPDTFTYTTIMDAYCKSGEMVKAHELLRDMLDKGLQPSVVTFNV-------LMNGF 581 (751)
Q Consensus 509 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~-------li~~~ 581 (751)
+...+..+++.|++.+....+.. .+..-++....+|...|.+.+....-....+.|.. ...-|+. +..+|
T Consensus 232 naaykkk~f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre-~rad~klIak~~~r~g~a~ 308 (539)
T KOG0548|consen 232 NAAYKKKDFETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRE-LRADYKLIAKALARLGNAY 308 (539)
T ss_pred HHHHHhhhHHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHH-HHHHHHHHHHHHHHhhhhh
Confidence 77777888888888888887764 45555666777888888888887777777666532 2233333 33455
Q ss_pred HhcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCCHHHH
Q 004470 582 CMSGMIEDGEKLLKWMLEKGLKPNAATYNPLIKQHCLRNDMRTTAKIYKGMCAQGITPDGN-TYNILLQGHCKARNMKEA 660 (751)
Q Consensus 582 ~~~g~~~~A~~l~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-~~~~li~~~~~~g~~~~A 660 (751)
.+.++++.|+..+.+.+.....|+.. .+....+++....+...- +.|+.. --..-...+.+.|++.+|
T Consensus 309 ~k~~~~~~ai~~~~kaLte~Rt~~~l---------s~lk~~Ek~~k~~e~~a~--~~pe~A~e~r~kGne~Fk~gdy~~A 377 (539)
T KOG0548|consen 309 TKREDYEGAIKYYQKALTEHRTPDLL---------SKLKEAEKALKEAERKAY--INPEKAEEEREKGNEAFKKGDYPEA 377 (539)
T ss_pred hhHHhHHHHHHHHHHHhhhhcCHHHH---------HHHHHHHHHHHHHHHHHh--hChhHHHHHHHHHHHHHhccCHHHH
Confidence 56678888888888877654444322 122333444433333322 122221 112224445566666666
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 004470 661 WFLHKEMVQKGFNLTTSSYNALIKGFLKRKKYLEARELFEEMRRGGLVADREIYYFFVDINFEEGNTEITLELCDAAIEC 740 (751)
Q Consensus 661 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 740 (751)
++.|.+++...+. |...|....-+|.+.|.+..|++-.+..++.+ ++....|..-+.++....++++|.+.|+++++.
T Consensus 378 v~~YteAIkr~P~-Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~-p~~~kgy~RKg~al~~mk~ydkAleay~eale~ 455 (539)
T KOG0548|consen 378 VKHYTEAIKRDPE-DARLYSNRAACYLKLGEYPEALKDAKKCIELD-PNFIKAYLRKGAALRAMKEYDKALEAYQEALEL 455 (539)
T ss_pred HHHHHHHHhcCCc-hhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 6666666666544 66666666666666666666666666666653 444455555555566666666666666666655
Q ss_pred C
Q 004470 741 Y 741 (751)
Q Consensus 741 ~ 741 (751)
.
T Consensus 456 d 456 (539)
T KOG0548|consen 456 D 456 (539)
T ss_pred C
Confidence 4
No 86
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=99.21 E-value=3.5e-07 Score=99.25 Aligned_cols=539 Identities=12% Similarity=0.004 Sum_probs=292.4
Q ss_pred HhhhcCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCccCHHhHHHHHHHHHhCCCCHHHHHHHHHhchhcCCC-c
Q 004470 176 YTYKDWGSDPHVFDIFFQVLVEARKLNEARKLFEKLLNYGLVISVDSCNLFLSRLSNTCDGLRMVVKSFTEFPELGIC-W 254 (751)
Q Consensus 176 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~l~~~~~~~~~a~~~~~~~~~~~~~-~ 254 (751)
.+.+--+.-..+|..|+..|....+...|.+.|+++.+. +++....-..+...+....+++.|..+.-..-+..+. .
T Consensus 483 ~alrld~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeL--Datdaeaaaa~adtyae~~~we~a~~I~l~~~qka~a~~ 560 (1238)
T KOG1127|consen 483 RALRLDVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFEL--DATDAEAAAASADTYAEESTWEEAFEICLRAAQKAPAFA 560 (1238)
T ss_pred HHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--CchhhhhHHHHHHHhhccccHHHHHHHHHHHhhhchHHH
Confidence 333333444456777777777777777777777777665 4554444444444444556777776664333332111 0
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-cccHHHHH
Q 004470 255 NTASYNIMIHCLCRFGKIKEAHLLLLQMELRGCSPDVVSFSTIINGYCYLGELQRVLKLIEEMQIKGLKPN-PYTYNSVV 333 (751)
Q Consensus 255 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~li 333 (751)
-...|-.+.-.|.+.++...|+.-|+...+..+ .|...|..++.+|...|++..|+++|.+..... |+ .+.---..
T Consensus 561 ~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dP-kD~n~W~gLGeAY~~sGry~~AlKvF~kAs~Lr--P~s~y~~fk~A 637 (1238)
T KOG1127|consen 561 CKENWVQRGPYYLEAHNLHGAVCEFQSALRTDP-KDYNLWLGLGEAYPESGRYSHALKVFTKASLLR--PLSKYGRFKEA 637 (1238)
T ss_pred HHhhhhhccccccCccchhhHHHHHHHHhcCCc-hhHHHHHHHHHHHHhcCceehHHHhhhhhHhcC--cHhHHHHHHHH
Confidence 011222244456667777777777777666443 366677777777777777777777777766542 22 22222233
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCC------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-------CCCCCHHHHH
Q 004470 334 RLLCKTSKVVEAETILREMMNQG------IVPDNVIYTTLIDGFCKMGNVAAAYRLFDEMRGL-------NIIPDLLTYT 400 (751)
Q Consensus 334 ~~~~~~g~~~~A~~~~~~m~~~g------~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-------~~~p~~~~~~ 400 (751)
-..|..|++.+|...+......- ..--..++..+...+.-.|-..+|.+.+++-.+. ...-+...|-
T Consensus 638 ~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h~~~~~~~~Wi 717 (1238)
T KOG1127|consen 638 VMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIHSLQSDRLQWI 717 (1238)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhhhHHHHH
Confidence 44566777777777777665431 0001112222222222333333444444333221 1011122222
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCh---h---HHHHHHHHHHhCCCCCCHHHHHHHHH
Q 004470 401 AIICGFCLTGKMVEAEKLFHEMLGRGLEPDEIVYTALIDGYCKAGGM---K---KAFSLHNNMVHMRLTPNVVTYTALAD 474 (751)
Q Consensus 401 ~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~---~---~A~~~~~~~~~~~~~~~~~~~~~li~ 474 (751)
.+. .|..+|-... .. .|+......+..-.-+.+.. + -+.+.+-.-++ ...+..+|..|+.
T Consensus 718 ~as----------dac~~f~q~e-~~-~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hls--l~~~~~~WyNLGi 783 (1238)
T KOG1127|consen 718 VAS----------DACYIFSQEE-PS-IVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLS--LAIHMYPWYNLGI 783 (1238)
T ss_pred HHh----------HHHHHHHHhc-cc-chHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHH--HhhccchHHHHhH
Confidence 111 1222222222 11 22222222222212222222 1 01111111111 1223455666665
Q ss_pred HHHh--------cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 004470 475 GLCK--------SGELETANELLHEMCRKGLQLNIYTYNSIVNGLCKAGNILQAVKLMEDMEVAGFHPDTFTYTTIMDAY 546 (751)
Q Consensus 475 ~~~~--------~g~~~~A~~l~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~ 546 (751)
.|.+ ..+...|+..+...++.. ..+..+|+.|.-. ...|++.-|..-|-+-.... +....+|..+...+
T Consensus 784 nylr~f~~l~et~~~~~~Ai~c~KkaV~L~-ann~~~WnaLGVl-sg~gnva~aQHCfIks~~se-p~~~~~W~NlgvL~ 860 (1238)
T KOG1127|consen 784 NYLRYFLLLGETMKDACTAIRCCKKAVSLC-ANNEGLWNALGVL-SGIGNVACAQHCFIKSRFSE-PTCHCQWLNLGVLV 860 (1238)
T ss_pred HHHHHHHHcCCcchhHHHHHHHHHHHHHHh-hccHHHHHHHHHh-hccchhhhhhhhhhhhhhcc-ccchhheeccceeE
Confidence 5544 123346778888777653 2266677766544 55678888877776666554 56778888888888
Q ss_pred HHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHH--H--cCCCCCHhhHHHHHHHHHHcCCH
Q 004470 547 CKSGEMVKAHELLRDMLDKGLQPSVVTFNVLMNGFCMSGMIEDGEKLLKWML--E--KGLKPNAATYNPLIKQHCLRNDM 622 (751)
Q Consensus 547 ~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~~~--~--~g~~p~~~~~~~l~~~~~~~g~~ 622 (751)
.+..+++.|...|...+... +.+...|-.........|+.-++..+|..-- . .|--|+..-|-.........|+.
T Consensus 861 l~n~d~E~A~~af~~~qSLd-P~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~te~h~~Ng~~ 939 (1238)
T KOG1127|consen 861 LENQDFEHAEPAFSSVQSLD-PLNLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCATEIHLQNGNI 939 (1238)
T ss_pred EecccHHHhhHHHHhhhhcC-chhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHHHHHHHhccch
Confidence 99999999999999988763 4466677666666667788888888887622 2 23445554444444455567766
Q ss_pred HHHHHHHHHHHH---------CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCCCHHHHH----HHHHHHHh
Q 004470 623 RTTAKIYKGMCA---------QGITPDGNTYNILLQGHCKARNMKEAWFLHKEMVQK-GFNLTTSSYN----ALIKGFLK 688 (751)
Q Consensus 623 ~~A~~~~~~m~~---------~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~~~p~~~~~~----~l~~~~~~ 688 (751)
++-+...+++-. .+.+.+...|...+...-+.+.+.+|.++..+.+.. ..+.+...|+ .+.+.++.
T Consensus 940 e~~I~t~~ki~sAs~al~~yf~~~p~~~fAy~~~gstlEhL~ey~~a~ela~RliglLe~k~d~sqynvak~~~gRL~ls 1019 (1238)
T KOG1127|consen 940 EESINTARKISSASLALSYYFLGHPQLCFAYAANGSTLEHLEEYRAALELATRLIGLLELKLDESQYNVAKPDAGRLELS 1019 (1238)
T ss_pred HHHHHHhhhhhhhHHHHHHHHhcCcchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhh
Confidence 654443333321 234446777888888888888888888887776531 1122344444 44556667
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcC
Q 004470 689 RKKYLEARELFEEMRRGGLVADREIYYFFVDINFEEGNTEITLELCDAAIECY 741 (751)
Q Consensus 689 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 741 (751)
.|.++.|..-+..... ..|......- -+++-.|+++++.+.|++++--.
T Consensus 1020 lgefe~A~~a~~~~~~---evdEdi~gt~-l~lFfkndf~~sl~~fe~aLsis 1068 (1238)
T KOG1127|consen 1020 LGEFESAKKASWKEWM---EVDEDIRGTD-LTLFFKNDFFSSLEFFEQALSIS 1068 (1238)
T ss_pred hcchhhHhhhhcccch---hHHHHHhhhh-HHHHHHhHHHHHHHHHHHHhhhc
Confidence 7777766554433211 1122222111 12345678999999999987543
No 87
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.20 E-value=1.5e-08 Score=92.02 Aligned_cols=201 Identities=14% Similarity=0.092 Sum_probs=158.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHH
Q 004470 538 TYTTIMDAYCKSGEMVKAHELLRDMLDKGLQPSVVTFNVLMNGFCMSGMIEDGEKLLKWMLEKGLKPNAATYNPLIKQHC 617 (751)
Q Consensus 538 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~g~~p~~~~~~~l~~~~~ 617 (751)
+...|.-+|...|++..|..-+++.++.. +.+..+|..+...|.+.|..+.|.+.|++.+.... -+..+.|.....+|
T Consensus 37 arlqLal~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p-~~GdVLNNYG~FLC 114 (250)
T COG3063 37 ARLQLALGYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALSLAP-NNGDVLNNYGAFLC 114 (250)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCC-CccchhhhhhHHHH
Confidence 34556677888888888888888888874 44677888888888888998999888888887632 25677888888888
Q ss_pred HcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 004470 618 LRNDMRTTAKIYKGMCAQGITP-DGNTYNILLQGHCKARNMKEAWFLHKEMVQKGFNLTTSSYNALIKGFLKRKKYLEAR 696 (751)
Q Consensus 618 ~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~ 696 (751)
..|++++|...|++....-.-+ -..+|..+.-+-.+.|+.+.|...|++.++..+. .+.....+.....+.|++..|.
T Consensus 115 ~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~-~~~~~l~~a~~~~~~~~y~~Ar 193 (250)
T COG3063 115 AQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQ-FPPALLELARLHYKAGDYAPAR 193 (250)
T ss_pred hCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcC-CChHHHHHHHHHHhcccchHHH
Confidence 9999999999998888742222 2567778888888889999999999999887655 5667778888888899999999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCC
Q 004470 697 ELFEEMRRGGLVADREIYYFFVDINFEEGNTEITLELCDAAIECYL 742 (751)
Q Consensus 697 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 742 (751)
.+++.....+ .++.+.....+..-...|+.+.|-++=..+....+
T Consensus 194 ~~~~~~~~~~-~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~fP 238 (250)
T COG3063 194 LYLERYQQRG-GAQAESLLLGIRIAKRLGDRAAAQRYQAQLQRLFP 238 (250)
T ss_pred HHHHHHHhcc-cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC
Confidence 9998888766 48888887788888888988888777666655544
No 88
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.19 E-value=2.6e-07 Score=94.16 Aligned_cols=239 Identities=17% Similarity=0.108 Sum_probs=167.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHH-------H
Q 004470 468 TYTALADGLCKSGELETANELLHEMCRKGLQLNIYTYNSIVNGLCKAGNILQAVKLMEDMEVAGFHPDTFTY-------T 540 (751)
Q Consensus 468 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~-------~ 540 (751)
-...+.+...+..+++.|.+-+....+.. -+..-++....+|...|.+.+.....++..+.| .-...-| .
T Consensus 226 ~ek~lgnaaykkk~f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~g-re~rad~klIak~~~ 302 (539)
T KOG0548|consen 226 KEKELGNAAYKKKDFETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVG-RELRADYKLIAKALA 302 (539)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHh-HHHHHHHHHHHHHHH
Confidence 35567788888888999999888888775 356666777778888888888888877777665 2222222 2
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHh-hHHHHHHHHHHc
Q 004470 541 TIMDAYCKSGEMVKAHELLRDMLDKGLQPSVVTFNVLMNGFCMSGMIEDGEKLLKWMLEKGLKPNAA-TYNPLIKQHCLR 619 (751)
Q Consensus 541 ~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~g~~p~~~-~~~~l~~~~~~~ 619 (751)
.+..+|.+.++++.|+..|.+.......|+.. .+....+++.+......-. .|... -...-...+.+.
T Consensus 303 r~g~a~~k~~~~~~ai~~~~kaLte~Rt~~~l---------s~lk~~Ek~~k~~e~~a~~--~pe~A~e~r~kGne~Fk~ 371 (539)
T KOG0548|consen 303 RLGNAYTKREDYEGAIKYYQKALTEHRTPDLL---------SKLKEAEKALKEAERKAYI--NPEKAEEEREKGNEAFKK 371 (539)
T ss_pred HhhhhhhhHHhHHHHHHHHHHHhhhhcCHHHH---------HHHHHHHHHHHHHHHHHhh--ChhHHHHHHHHHHHHHhc
Confidence 24446777788999999999877654444332 2333445555554444332 23321 112225557789
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 004470 620 NDMRTTAKIYKGMCAQGITPDGNTYNILLQGHCKARNMKEAWFLHKEMVQKGFNLTTSSYNALIKGFLKRKKYLEARELF 699 (751)
Q Consensus 620 g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 699 (751)
|++..|.+.|.++++.. +.|...|....-+|.+.|.+..|++-.+..++.++. ....|..-+.++....+|++|.+.|
T Consensus 372 gdy~~Av~~YteAIkr~-P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~-~~kgy~RKg~al~~mk~ydkAleay 449 (539)
T KOG0548|consen 372 GDYPEAVKHYTEAIKRD-PEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPN-FIKAYLRKGAALRAMKEYDKALEAY 449 (539)
T ss_pred cCHHHHHHHHHHHHhcC-CchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCch-HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999875 447888999999999999999999998888887543 5557777777778888999999999
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHh
Q 004470 700 EEMRRGGLVADREIYYFFVDINFE 723 (751)
Q Consensus 700 ~~~~~~~~~~~~~~~~~l~~~~~~ 723 (751)
++.++.+ +.+.+....+.++...
T Consensus 450 ~eale~d-p~~~e~~~~~~rc~~a 472 (539)
T KOG0548|consen 450 QEALELD-PSNAEAIDGYRRCVEA 472 (539)
T ss_pred HHHHhcC-chhHHHHHHHHHHHHH
Confidence 9999875 4444554455555443
No 89
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=99.17 E-value=2.2e-06 Score=91.10 Aligned_cols=58 Identities=16% Similarity=0.178 Sum_probs=39.4
Q ss_pred CHHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH
Q 004470 656 NMKEAWFLHKEMVQKGFNLT----TSSYNALIKGFLKRKKYLEARELFEEMRRGGLVADREI 713 (751)
Q Consensus 656 ~~~~A~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 713 (751)
+..+.++-...|.+....|+ ...|..|+..+....+|..|.+.+++|..+....|..+
T Consensus 1306 D~~~~i~qc~~lleep~ld~~Ir~~~~~a~lie~~v~~k~y~~AyRal~el~~k~p~~~~s~ 1367 (1416)
T KOG3617|consen 1306 DAADGIRQCTTLLEEPILDDIIRCTRLFALLIEDHVSRKNYKPAYRALTELQKKVPNVDLST 1367 (1416)
T ss_pred hHHHHHHHHHHHhhCcCCCCcchhHHHHHHHHHHHHhhhhccHHHHHHHHHhhcCCccchhc
Confidence 55555666666666543333 35777888888889999999999999888643334333
No 90
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.16 E-value=3.4e-08 Score=100.03 Aligned_cols=231 Identities=12% Similarity=-0.020 Sum_probs=146.7
Q ss_pred CCHHHHHHHHHHHHHcCC-CC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 004470 480 GELETANELLHEMCRKGL-QL--NIYTYNSIVNGLCKAGNILQAVKLMEDMEVAGFHPDTFTYTTIMDAYCKSGEMVKAH 556 (751)
Q Consensus 480 g~~~~A~~l~~~m~~~g~-~~--~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 556 (751)
+..+.++.-+.+++.... .| ....|..+...+...|+.++|...|++..+.. +.+...|+.+...+...|++++|.
T Consensus 40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~A~ 118 (296)
T PRK11189 40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDAAY 118 (296)
T ss_pred hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHHHH
Confidence 345666666666664321 11 23456667777788888888888888887765 556778888888888888888888
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCC
Q 004470 557 ELLRDMLDKGLQPSVVTFNVLMNGFCMSGMIEDGEKLLKWMLEKGLKPNAATYNPLIKQHCLRNDMRTTAKIYKGMCAQG 636 (751)
Q Consensus 557 ~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 636 (751)
..|++.++.. +.+..+|..+...+...|++++|.+.++...+. .|+..........+...++.++|.+.+++.....
T Consensus 119 ~~~~~Al~l~-P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~--~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~~ 195 (296)
T PRK11189 119 EAFDSVLELD-PTYNYAYLNRGIALYYGGRYELAQDDLLAFYQD--DPNDPYRALWLYLAESKLDPKQAKENLKQRYEKL 195 (296)
T ss_pred HHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHccCCHHHHHHHHHHHHhhC
Confidence 8888887753 335667777777788888888888888888775 3333221111222345677888888887655432
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC---CCC---CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 004470 637 ITPDGNTYNILLQGHCKARNMKEAWFLHKEMVQK---GFN---LTTSSYNALIKGFLKRKKYLEARELFEEMRRGGLVAD 710 (751)
Q Consensus 637 ~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~---p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 710 (751)
.|+...+ .......|+..++ +.++.+.+. .+. .....|..++..+.+.|++++|+..|+++++.+ +||
T Consensus 196 -~~~~~~~---~~~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~-~~~ 269 (296)
T PRK11189 196 -DKEQWGW---NIVEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANN-VYN 269 (296)
T ss_pred -CccccHH---HHHHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-Cch
Confidence 3332221 2223345555444 344444421 111 123578888999999999999999999999865 444
Q ss_pred HHHH-HHHHHH
Q 004470 711 REIY-YFFVDI 720 (751)
Q Consensus 711 ~~~~-~~l~~~ 720 (751)
..-+ ..++..
T Consensus 270 ~~e~~~~~~e~ 280 (296)
T PRK11189 270 FVEHRYALLEL 280 (296)
T ss_pred HHHHHHHHHHH
Confidence 4333 334433
No 91
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.15 E-value=2.4e-07 Score=88.76 Aligned_cols=343 Identities=10% Similarity=0.019 Sum_probs=209.7
Q ss_pred HHHhhhhC-CCCChhHHHHHHHHHHhcCChHHHHHHHHHHHcCCCCCchhhhHHHHHHHHHhhhcCCCChhhHHHHHHHH
Q 004470 117 FFDWACLR-REPILEARCIVVQISVAAKDLKTAHGLIHDFWAKPNLDASIAFTHFVERLIYTYKDWGSDPHVFDIFFQVL 195 (751)
Q Consensus 117 ~f~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~ 195 (751)
+|..+... .+..++-+.-++.-+...|++.+|..-++.++..+ |.+-.++.--+.+|
T Consensus 25 ~~e~a~~~~~~advekhlElGk~lla~~Q~sDALt~yHaAve~d----------------------p~~Y~aifrRaT~y 82 (504)
T KOG0624|consen 25 FLEGAESTASPADVEKHLELGKELLARGQLSDALTHYHAAVEGD----------------------PNNYQAIFRRATVY 82 (504)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCC----------------------chhHHHHHHHHHHH
Confidence 44444333 34556778888888999999999999999988776 45555666678889
Q ss_pred HhcCChhHHHHHHHHHHhCCCccCHHhHHHHHHHHHhCCCCHHHHHHHHHhchhcCCCcCHHHHHHHHHHHHhcCCHHHH
Q 004470 196 VEARKLNEARKLFEKLLNYGLVISVDSCNLFLSRLSNTCDGLRMVVKSFTEFPELGICWNTASYNIMIHCLCRFGKIKEA 275 (751)
Q Consensus 196 ~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 275 (751)
...|+..-|+.-+.++++. +||......--+.+..++|.+++|..-|+.++...+.. |...+|
T Consensus 83 LAmGksk~al~Dl~rVlel--KpDF~~ARiQRg~vllK~Gele~A~~DF~~vl~~~~s~---------------~~~~ea 145 (504)
T KOG0624|consen 83 LAMGKSKAALQDLSRVLEL--KPDFMAARIQRGVVLLKQGELEQAEADFDQVLQHEPSN---------------GLVLEA 145 (504)
T ss_pred hhhcCCccchhhHHHHHhc--CccHHHHHHHhchhhhhcccHHHHHHHHHHHHhcCCCc---------------chhHHH
Confidence 9999999999999999987 89988777777777678899999999999998875531 112222
Q ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 004470 276 HLLLLQMELRGCSPDVVSFSTIINGYCYLGELQRVLKLIEEMQIKGLKPNPYTYNSVVRLLCKTSKVVEAETILREMMNQ 355 (751)
Q Consensus 276 ~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 355 (751)
.+-+....+ .......+..+...|+...|++....+.+.. +-|...|..-..+|...|+...|+.-++..-+.
T Consensus 146 qskl~~~~e------~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~-~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askL 218 (504)
T KOG0624|consen 146 QSKLALIQE------HWVLVQQLKSASGSGDCQNAIEMITHLLEIQ-PWDASLRQARAKCYIAEGEPKKAIHDLKQASKL 218 (504)
T ss_pred HHHHHhHHH------HHHHHHHHHHHhcCCchhhHHHHHHHHHhcC-cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhc
Confidence 221111111 0011223334556788888888888888763 337777777788888888888888777766655
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 004470 356 GIVPDNVIYTTLIDGFCKMGNVAAAYRLFDEMRGLNIIPDLLTYTAIICGFCLTGKMVEAEKLFHEMLGRGLEPDEIVYT 435 (751)
Q Consensus 356 g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~ 435 (751)
. ..+..+.--+-..+...|+.+.++...++.++.+ ||....-.. | .++.+..+.++.|.+
T Consensus 219 s-~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKld--pdHK~Cf~~---Y---KklkKv~K~les~e~----------- 278 (504)
T KOG0624|consen 219 S-QDNTEGHYKISQLLYTVGDAENSLKEIRECLKLD--PDHKLCFPF---Y---KKLKKVVKSLESAEQ----------- 278 (504)
T ss_pred c-ccchHHHHHHHHHHHhhhhHHHHHHHHHHHHccC--cchhhHHHH---H---HHHHHHHHHHHHHHH-----------
Confidence 3 2345556666677778888888888888887754 443221111 1 111122222222211
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHH---HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 004470 436 ALIDGYCKAGGMKKAFSLHNNMVHMRLTPNVVT---YTALADGLCKSGELETANELLHEMCRKGLQLNIYTYNSIVNGLC 512 (751)
Q Consensus 436 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~---~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~~~~li~~~~ 512 (751)
....++|.++++-.+...+..+...... +..+-.++...|++.+|++...+..+.. +.|..++.--..+|.
T Consensus 279 -----~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d-~~dv~~l~dRAeA~l 352 (504)
T KOG0624|consen 279 -----AIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDID-PDDVQVLCDRAEAYL 352 (504)
T ss_pred -----HHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcC-chHHHHHHHHHHHHh
Confidence 1223344444444444444432211222 2233344445555666666665555442 113455555555666
Q ss_pred HcCCHHHHHHHHHHHHHCC
Q 004470 513 KAGNILQAVKLMEDMEVAG 531 (751)
Q Consensus 513 ~~g~~~~A~~~~~~~~~~~ 531 (751)
-...++.|+.-|+...+.+
T Consensus 353 ~dE~YD~AI~dye~A~e~n 371 (504)
T KOG0624|consen 353 GDEMYDDAIHDYEKALELN 371 (504)
T ss_pred hhHHHHHHHHHHHHHHhcC
Confidence 5666666666666665543
No 92
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.14 E-value=2.1e-07 Score=97.99 Aligned_cols=204 Identities=8% Similarity=-0.080 Sum_probs=124.8
Q ss_pred CCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCC-ccCHHhHHHHHHHHHhCCCCHHHHHHHHHhchhcCCCcCHHHHH
Q 004470 182 GSDPHVFDIFFQVLVEARKLNEARKLFEKLLNYGL-VISVDSCNLFLSRLSNTCDGLRMVVKSFTEFPELGICWNTASYN 260 (751)
Q Consensus 182 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~-~p~~~~~~~ll~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 260 (751)
|..+..+..++..+...|+.++|...+.+..+... .++......+.+......|++++|.+.++++.+..|. |...+.
T Consensus 3 p~~~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~-~~~a~~ 81 (355)
T cd05804 3 PDFALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDYPR-DLLALK 81 (355)
T ss_pred CccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-cHHHHH
Confidence 44556777888888888888888877777665421 2344444444444444678888888888888777544 444443
Q ss_pred HHHHHHH----hcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHH
Q 004470 261 IMIHCLC----RFGKIKEAHLLLLQMELRGCSPDVVSFSTIINGYCYLGELQRVLKLIEEMQIKGLKPNPYTYNSVVRLL 336 (751)
Q Consensus 261 ~li~~~~----~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~ 336 (751)
. ...+. ..|..+.+.+.++. .....+........+...+...|++++|.+.+++..+.. +.+...+..+...+
T Consensus 82 ~-~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~-p~~~~~~~~la~i~ 158 (355)
T cd05804 82 L-HLGAFGLGDFSGMRDHVARVLPL-WAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELN-PDDAWAVHAVAHVL 158 (355)
T ss_pred H-hHHHHHhcccccCchhHHHHHhc-cCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCcHHHHHHHHHH
Confidence 2 22222 23445555555544 111111223344455566677788888888888877764 33456667777777
Q ss_pred HhcCCHHHHHHHHHHHHHCCC-CCCH--HHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 004470 337 CKTSKVVEAETILREMMNQGI-VPDN--VIYTTLIDGFCKMGNVAAAYRLFDEMRG 389 (751)
Q Consensus 337 ~~~g~~~~A~~~~~~m~~~g~-~p~~--~~~~~li~~~~~~g~~~~A~~~~~~m~~ 389 (751)
...|++++|...+++...... .|+. ..|..+...+...|++++|..++++...
T Consensus 159 ~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~ 214 (355)
T cd05804 159 EMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIA 214 (355)
T ss_pred HHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhc
Confidence 778888888887777766421 1222 2344566777777777777777777654
No 93
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=99.13 E-value=6.6e-06 Score=86.43 Aligned_cols=234 Identities=16% Similarity=0.147 Sum_probs=119.3
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhCC---------CccCHHhHHHHHHHHHhCCCCHHHHHHHHHhchhcCCCcCHH
Q 004470 187 VFDIFFQVLVEARKLNEARKLFEKLLNYG---------LVISVDSCNLFLSRLSNTCDGLRMVVKSFTEFPELGICWNTA 257 (751)
Q Consensus 187 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~g---------~~p~~~~~~~ll~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~ 257 (751)
.|+--+..|-+..++++|++.|.+--..| +...+++....-+......|+++.|...|-++...
T Consensus 663 lydkagdlfeki~d~dkale~fkkgdaf~kaielarfafp~evv~lee~wg~hl~~~~q~daainhfiea~~~------- 735 (1636)
T KOG3616|consen 663 LYDKAGDLFEKIHDFDKALECFKKGDAFGKAIELARFAFPEEVVKLEEAWGDHLEQIGQLDAAINHFIEANCL------- 735 (1636)
T ss_pred HHHhhhhHHHHhhCHHHHHHHHHcccHHHHHHHHHHhhCcHHHhhHHHHHhHHHHHHHhHHHHHHHHHHhhhH-------
Confidence 45555566666666677776665421111 11122222222222222345555555555433211
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHH
Q 004470 258 SYNIMIHCLCRFGKIKEAHLLLLQMELRGCSPDVVSFSTIINGYCYLGELQRVLKLIEEMQIKGLKPNPYTYNSVVRLLC 337 (751)
Q Consensus 258 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~ 337 (751)
-..+.+-....++.+|+.+++.+.+... -..-|..+...|...|+++.|.++|-+. ..++-.|..|.
T Consensus 736 --~kaieaai~akew~kai~ildniqdqk~--~s~yy~~iadhyan~~dfe~ae~lf~e~---------~~~~dai~my~ 802 (1636)
T KOG3616|consen 736 --IKAIEAAIGAKEWKKAISILDNIQDQKT--ASGYYGEIADHYANKGDFEIAEELFTEA---------DLFKDAIDMYG 802 (1636)
T ss_pred --HHHHHHHhhhhhhhhhHhHHHHhhhhcc--ccccchHHHHHhccchhHHHHHHHHHhc---------chhHHHHHHHh
Confidence 2234445566677777777776665432 2234556666777777777777777532 22455667777
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 004470 338 KTSKVVEAETILREMMNQGIVPDNVIYTTLIDGFCKMGNVAAAYRLFDEMRGLNIIPDLLTYTAIICGFCLTGKMVEAEK 417 (751)
Q Consensus 338 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~ 417 (751)
+.|++++|.++-++.. |.+.....|.+-..-+-+.|++.+|.++|-.+.. |+ ..|..|-+.|..+..++
T Consensus 803 k~~kw~da~kla~e~~--~~e~t~~~yiakaedldehgkf~eaeqlyiti~~----p~-----~aiqmydk~~~~ddmir 871 (1636)
T KOG3616|consen 803 KAGKWEDAFKLAEECH--GPEATISLYIAKAEDLDEHGKFAEAEQLYITIGE----PD-----KAIQMYDKHGLDDDMIR 871 (1636)
T ss_pred ccccHHHHHHHHHHhc--CchhHHHHHHHhHHhHHhhcchhhhhheeEEccC----ch-----HHHHHHHhhCcchHHHH
Confidence 7777777776655543 2244455566666666667777777666643322 32 23445555555555555
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHH
Q 004470 418 LFHEMLGRGLEPDEIVYTALIDGYCKAGGMKKAFSLH 454 (751)
Q Consensus 418 ~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~ 454 (751)
+.++-...- -..|-..+..-+-..|+...|..-|
T Consensus 872 lv~k~h~d~---l~dt~~~f~~e~e~~g~lkaae~~f 905 (1636)
T KOG3616|consen 872 LVEKHHGDH---LHDTHKHFAKELEAEGDLKAAEEHF 905 (1636)
T ss_pred HHHHhChhh---hhHHHHHHHHHHHhccChhHHHHHH
Confidence 544322110 1122233344444455555554444
No 94
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=99.12 E-value=2.8e-06 Score=89.16 Aligned_cols=434 Identities=17% Similarity=0.132 Sum_probs=229.2
Q ss_pred CCHHHHHHHHHhchhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 004470 235 DGLRMVVKSFTEFPELGICWNTASYNIMIHCLCRFGKIKEAHLLLLQMELRGCSPDVVSFSTIINGYCYLGELQRVLKLI 314 (751)
Q Consensus 235 ~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~ 314 (751)
.++.+|..+|-+--. -...|..|....++++|+.+-+. .|.+.-...-.+.+.++...|+-++|-++-
T Consensus 545 kkfk~ae~ifleqn~---------te~aigmy~~lhkwde~i~lae~---~~~p~~eklk~sy~q~l~dt~qd~ka~elk 612 (1636)
T KOG3616|consen 545 KKFKEAEMIFLEQNA---------TEEAIGMYQELHKWDEAIALAEA---KGHPALEKLKRSYLQALMDTGQDEKAAELK 612 (1636)
T ss_pred hhhhHHHHHHHhccc---------HHHHHHHHHHHHhHHHHHHHHHh---cCChHHHHHHHHHHHHHHhcCchhhhhhhc
Confidence 456677766643321 12445677777888888876543 233222223345566666778777776543
Q ss_pred HHHHHCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC----
Q 004470 315 EEMQIKGLKPNPYTYNSVVRLLCKTSKVVEAETILREMMNQGIVPDNVIYTTLIDGFCKMGNVAAAYRLFDEMRGL---- 390 (751)
Q Consensus 315 ~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---- 390 (751)
+. +-.+ .+.|..|.+.|....|.+....=.. +..|......+..++.+..-+++|-++|+++...
T Consensus 613 ~s--------dgd~-laaiqlyika~~p~~a~~~a~n~~~--l~~de~il~~ia~alik~elydkagdlfeki~d~dkal 681 (1636)
T KOG3616|consen 613 ES--------DGDG-LAAIQLYIKAGKPAKAARAALNDEE--LLADEEILEHIAAALIKGELYDKAGDLFEKIHDFDKAL 681 (1636)
T ss_pred cc--------cCcc-HHHHHHHHHcCCchHHHHhhcCHHH--hhccHHHHHHHHHHHHhhHHHHhhhhHHHHhhCHHHHH
Confidence 21 2222 3457888888888777654321111 1234444444444444444444444455444321
Q ss_pred -----C-------------CCCCHHHH-HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHH
Q 004470 391 -----N-------------IIPDLLTY-TAIICGFCLTGKMVEAEKLFHEMLGRGLEPDEIVYTALIDGYCKAGGMKKAF 451 (751)
Q Consensus 391 -----~-------------~~p~~~~~-~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~ 451 (751)
| .+..+++. ......+...|+++.|+.-|-+.. .....+.+......|.+|+
T Consensus 682 e~fkkgdaf~kaielarfafp~evv~lee~wg~hl~~~~q~daainhfiea~---------~~~kaieaai~akew~kai 752 (1636)
T KOG3616|consen 682 ECFKKGDAFGKAIELARFAFPEEVVKLEEAWGDHLEQIGQLDAAINHFIEAN---------CLIKAIEAAIGAKEWKKAI 752 (1636)
T ss_pred HHHHcccHHHHHHHHHHhhCcHHHhhHHHHHhHHHHHHHhHHHHHHHHHHhh---------hHHHHHHHHhhhhhhhhhH
Confidence 0 00000000 011112223333444333332211 1112334445566777777
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC
Q 004470 452 SLHNNMVHMRLTPNVVTYTALADGLCKSGELETANELLHEMCRKGLQLNIYTYNSIVNGLCKAGNILQAVKLMEDMEVAG 531 (751)
Q Consensus 452 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 531 (751)
.+++.+..... -...|..+.+.|...|+++.|.++|.+.- .++-.|..|.+.|++++|.++-.+...
T Consensus 753 ~ildniqdqk~--~s~yy~~iadhyan~~dfe~ae~lf~e~~---------~~~dai~my~k~~kw~da~kla~e~~~-- 819 (1636)
T KOG3616|consen 753 SILDNIQDQKT--ASGYYGEIADHYANKGDFEIAEELFTEAD---------LFKDAIDMYGKAGKWEDAFKLAEECHG-- 819 (1636)
T ss_pred hHHHHhhhhcc--ccccchHHHHHhccchhHHHHHHHHHhcc---------hhHHHHHHHhccccHHHHHHHHHHhcC--
Confidence 77777766532 23446667777888888888887775532 234457778888888888777665542
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhhHHH
Q 004470 532 FHPDTFTYTTIMDAYCKSGEMVKAHELLRDMLDKGLQPSVVTFNVLMNGFCMSGMIEDGEKLLKWMLEKGLKPNAATYNP 611 (751)
Q Consensus 532 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~g~~p~~~~~~~ 611 (751)
.......|-+-..-+-+.|++.+|.+++-.+. .|+. .|..|-+.|..++.+++..+-... .-..|...
T Consensus 820 ~e~t~~~yiakaedldehgkf~eaeqlyiti~----~p~~-----aiqmydk~~~~ddmirlv~k~h~d---~l~dt~~~ 887 (1636)
T KOG3616|consen 820 PEATISLYIAKAEDLDEHGKFAEAEQLYITIG----EPDK-----AIQMYDKHGLDDDMIRLVEKHHGD---HLHDTHKH 887 (1636)
T ss_pred chhHHHHHHHhHHhHHhhcchhhhhheeEEcc----CchH-----HHHHHHhhCcchHHHHHHHHhChh---hhhHHHHH
Confidence 12334455555556667777777777664432 2332 356677777777777666543211 11244555
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH---------
Q 004470 612 LIKQHCLRNDMRTTAKIYKGMCAQGITPDGNTYNILLQGHCKARNMKEAWFLHKEMVQKGFNLTTSSYNAL--------- 682 (751)
Q Consensus 612 l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l--------- 682 (751)
+..-|-..|++..|.+-|-+.-+ |..-++.|...+-|++|.++-+. .|-. +..-....
T Consensus 888 f~~e~e~~g~lkaae~~flea~d---------~kaavnmyk~s~lw~dayriakt---egg~-n~~k~v~flwaksiggd 954 (1636)
T KOG3616|consen 888 FAKELEAEGDLKAAEEHFLEAGD---------FKAAVNMYKASELWEDAYRIAKT---EGGA-NAEKHVAFLWAKSIGGD 954 (1636)
T ss_pred HHHHHHhccChhHHHHHHHhhhh---------HHHHHHHhhhhhhHHHHHHHHhc---cccc-cHHHHHHHHHHHhhCcH
Confidence 66667778888888777655433 33445566666667776655432 1111 11111111
Q ss_pred ---------------HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcC
Q 004470 683 ---------------IKGFLKRKKYLEARELFEEMRRGGLVADREIYYFFVDINFEEGNTEITLELCDAAIECY 741 (751)
Q Consensus 683 ---------------~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 741 (751)
++-.+..+-++-|..+-+-..+.. ...+...++..+-..|++++|-+.|-++++..
T Consensus 955 aavkllnk~gll~~~id~a~d~~afd~afdlari~~k~k---~~~vhlk~a~~ledegk~edaskhyveaikln 1025 (1636)
T KOG3616|consen 955 AAVKLLNKHGLLEAAIDFAADNCAFDFAFDLARIAAKDK---MGEVHLKLAMFLEDEGKFEDASKHYVEAIKLN 1025 (1636)
T ss_pred HHHHHHHhhhhHHHHhhhhhcccchhhHHHHHHHhhhcc---CccchhHHhhhhhhccchhhhhHhhHHHhhcc
Confidence 111223333444444433333321 12333445556778888999988888877654
No 95
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.12 E-value=3e-08 Score=100.38 Aligned_cols=197 Identities=11% Similarity=0.010 Sum_probs=118.5
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHHHHcCCCCCchhhhHHHHHHHHHhhhcCCCChhhHHHHHHHHHhcCChhHHHHHH
Q 004470 129 LEARCIVVQISVAAKDLKTAHGLIHDFWAKPNLDASIAFTHFVERLIYTYKDWGSDPHVFDIFFQVLVEARKLNEARKLF 208 (751)
Q Consensus 129 ~~~~~~~~~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 208 (751)
...++.++.++...|++++|...+.++++.. |.++.+|..++.+|...|++++|.+.|
T Consensus 64 a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~----------------------P~~~~a~~~lg~~~~~~g~~~~A~~~~ 121 (296)
T PRK11189 64 AQLHYERGVLYDSLGLRALARNDFSQALALR----------------------PDMADAYNYLGIYLTQAGNFDAAYEAF 121 (296)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC----------------------CCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 4557777778888888888888888887765 667778888888888888888888888
Q ss_pred HHHHhCCCccCHHhHHHHHHHHHhCCCCHHHHHHHHHhchhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 004470 209 EKLLNYGLVISVDSCNLFLSRLSNTCDGLRMVVKSFTEFPELGICWNTASYNIMIHCLCRFGKIKEAHLLLLQMELRGCS 288 (751)
Q Consensus 209 ~~~~~~g~~p~~~~~~~ll~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 288 (751)
+++++. .|+.......++.+....|++++|.+.|+++.+..+. +.. ...........++.++|...|++..... .
T Consensus 122 ~~Al~l--~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P~-~~~-~~~~~~l~~~~~~~~~A~~~l~~~~~~~-~ 196 (296)
T PRK11189 122 DSVLEL--DPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDDPN-DPY-RALWLYLAESKLDPKQAKENLKQRYEKL-D 196 (296)
T ss_pred HHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHH-HHHHHHHHHccCCHHHHHHHHHHHHhhC-C
Confidence 888876 5655444444444444668888888888887776543 221 1222222334567777777776544321 1
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC---C---CCCcccHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 004470 289 PDVVSFSTIINGYCYLGELQRVLKLIEEMQIKG---L---KPNPYTYNSVVRLLCKTSKVVEAETILREMMNQG 356 (751)
Q Consensus 289 p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g---~---~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 356 (751)
|+. |. ........|+.+.+ +.++.+.+.. + +....+|..+...+.+.|++++|...|++..+..
T Consensus 197 ~~~--~~-~~~~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~ 266 (296)
T PRK11189 197 KEQ--WG-WNIVEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANN 266 (296)
T ss_pred ccc--cH-HHHHHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 222 21 11222334554433 2344433210 0 0122356666666666666666666666666553
No 96
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.10 E-value=9.5e-06 Score=96.90 Aligned_cols=373 Identities=10% Similarity=0.013 Sum_probs=209.8
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC
Q 004470 367 LIDGFCKMGNVAAAYRLFDEMRGLNIIPD-LLTYTAIICGFCLTGKMVEAEKLFHEMLGRGLEPDEIVYTALIDGYCKAG 445 (751)
Q Consensus 367 li~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g 445 (751)
....+...|++.+|.......... +. ..........+...|+++.+..+++.+.......+..........+...|
T Consensus 347 aa~~~~~~g~~~~Al~~a~~a~d~---~~~~~ll~~~a~~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g 423 (903)
T PRK04841 347 AAEAWLAQGFPSEAIHHALAAGDA---QLLRDILLQHGWSLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQH 423 (903)
T ss_pred HHHHHHHCCCHHHHHHHHHHCCCH---HHHHHHHHHhHHHHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCC
Confidence 344466677777666554433211 00 00111122334456777776666655421111112222233444456678
Q ss_pred ChhHHHHHHHHHHhCCC------CCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH----HHHHHHHHHHHH
Q 004470 446 GMKKAFSLHNNMVHMRL------TPN--VVTYTALADGLCKSGELETANELLHEMCRKGLQLNI----YTYNSIVNGLCK 513 (751)
Q Consensus 446 ~~~~A~~~~~~~~~~~~------~~~--~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~----~~~~~li~~~~~ 513 (751)
++++|...+......-. .+. ......+...+...|++++|...+++..+.-...+. ...+.+...+..
T Consensus 424 ~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~ 503 (903)
T PRK04841 424 RYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHC 503 (903)
T ss_pred CHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHH
Confidence 88888888776654210 111 112222334456788888888888887653211121 234555666777
Q ss_pred cCCHHHHHHHHHHHHHCCC---CC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC----CCC--C-CHHHHHHHHHHH
Q 004470 514 AGNILQAVKLMEDMEVAGF---HP--DTFTYTTIMDAYCKSGEMVKAHELLRDMLDK----GLQ--P-SVVTFNVLMNGF 581 (751)
Q Consensus 514 ~g~~~~A~~~~~~~~~~~~---~~--~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----~~~--p-~~~~~~~li~~~ 581 (751)
.|++++|...+.+.....- .+ ...++..+...+...|++++|...+++..+. +.. + ....+..+...+
T Consensus 504 ~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~ 583 (903)
T PRK04841 504 KGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLL 583 (903)
T ss_pred cCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHH
Confidence 8888888888877654210 11 1234455666777888888888887776542 211 1 223344555666
Q ss_pred HhcCChhHHHHHHHHHHHcC--CCC--CHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCC--CCCCHH--H--HHHHHHHH
Q 004470 582 CMSGMIEDGEKLLKWMLEKG--LKP--NAATYNPLIKQHCLRNDMRTTAKIYKGMCAQG--ITPDGN--T--YNILLQGH 651 (751)
Q Consensus 582 ~~~g~~~~A~~l~~~~~~~g--~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g--~~p~~~--~--~~~li~~~ 651 (751)
...|++++|...+.+..... ..+ ....+..+...+...|+.++|.+.++++.... ...... . ....+..+
T Consensus 584 ~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 663 (903)
T PRK04841 584 WEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYW 663 (903)
T ss_pred HHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHH
Confidence 67788888888887775531 112 12334445566778888888888887775421 111110 0 01122344
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCCC-HHHHHHHHHHHHh
Q 004470 652 CKARNMKEAWFLHKEMVQKGFNLT---TSSYNALIKGFLKRKKYLEARELFEEMRRG----GLVAD-REIYYFFVDINFE 723 (751)
Q Consensus 652 ~~~g~~~~A~~~~~~~~~~~~~p~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~~-~~~~~~l~~~~~~ 723 (751)
...|+.+.|...+........... ...+..+..++...|++++|...++++... |...+ ..++..++.++.+
T Consensus 664 ~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~ 743 (903)
T PRK04841 664 QMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQ 743 (903)
T ss_pred HHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHH
Confidence 557888888888766543211111 112345677778888888888888887652 22221 2455566778888
Q ss_pred cCChhHHHHHHHHHHHcCC
Q 004470 724 EGNTEITLELCDAAIECYL 742 (751)
Q Consensus 724 ~g~~~~A~~~~~~~~~~~~ 742 (751)
.|+.++|.+.+.++++...
T Consensus 744 ~G~~~~A~~~L~~Al~la~ 762 (903)
T PRK04841 744 QGRKSEAQRVLLEALKLAN 762 (903)
T ss_pred cCCHHHHHHHHHHHHHHhC
Confidence 8888888888888887653
No 97
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.09 E-value=9.2e-07 Score=84.81 Aligned_cols=191 Identities=14% Similarity=0.094 Sum_probs=114.5
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHH
Q 004470 511 LCKAGNILQAVKLMEDMEVAGFHPDTFTYTTIMDAYCKSGEMVKAHELLRDMLDKGLQPSVVTFNVLMNGFCMSGMIEDG 590 (751)
Q Consensus 511 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A 590 (751)
+...|+...|+.....+.+.. +-|+..|..-..+|...|++..|+.-++...+.. ..+..++--+-..+...|+.+.+
T Consensus 165 ~~~~GD~~~ai~~i~~llEi~-~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs-~DnTe~~ykis~L~Y~vgd~~~s 242 (504)
T KOG0624|consen 165 ASGSGDCQNAIEMITHLLEIQ-PWDASLRQARAKCYIAEGEPKKAIHDLKQASKLS-QDNTEGHYKISQLLYTVGDAENS 242 (504)
T ss_pred HhcCCchhhHHHHHHHHHhcC-cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHhhhhHHHH
Confidence 344556666666666665543 4455555555666666666666665555554432 33444444555555556666666
Q ss_pred HHHHHHHHHcCCCCCHhh----HHHH---------HHHHHHcCCHHHHHHHHHHHHHCCCCCCHHH---HHHHHHHHHhc
Q 004470 591 EKLLKWMLEKGLKPNAAT----YNPL---------IKQHCLRNDMRTTAKIYKGMCAQGITPDGNT---YNILLQGHCKA 654 (751)
Q Consensus 591 ~~l~~~~~~~g~~p~~~~----~~~l---------~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~---~~~li~~~~~~ 654 (751)
+...++.++. .||... |..| +......+++.++++-.+...+....-.... +..+-.++...
T Consensus 243 L~~iRECLKl--dpdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d 320 (504)
T KOG0624|consen 243 LKEIRECLKL--DPDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYRED 320 (504)
T ss_pred HHHHHHHHcc--CcchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeeccccc
Confidence 6666655553 344321 1111 1113456677777777777776532211222 33445566677
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 004470 655 RNMKEAWFLHKEMVQKGFNLTTSSYNALIKGFLKRKKYLEARELFEEMRRGG 706 (751)
Q Consensus 655 g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 706 (751)
|++.+|++...+.++..+. |..++-.-+.+|.-...+++|+.-|+++.+.+
T Consensus 321 ~~~~eAiqqC~evL~~d~~-dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n 371 (504)
T KOG0624|consen 321 EQFGEAIQQCKEVLDIDPD-DVQVLCDRAEAYLGDEMYDDAIHDYEKALELN 371 (504)
T ss_pred CCHHHHHHHHHHHHhcCch-HHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcC
Confidence 8888888888888876433 57788888888888888888888888888754
No 98
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.08 E-value=9e-07 Score=93.15 Aligned_cols=305 Identities=12% Similarity=-0.013 Sum_probs=161.7
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHhCCC-CCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 004470 433 VYTALIDGYCKAGGMKKAFSLHNNMVHMRL-TPNV-VTYTALADGLCKSGELETANELLHEMCRKGLQLNIYTYNSIVNG 510 (751)
Q Consensus 433 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-~~~~-~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~~~~li~~ 510 (751)
.+..+...+...|+.+.+...+.+..+... .++. .........+...|++++|.+.+++..+..+ .+...+.. ...
T Consensus 8 a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P-~~~~a~~~-~~~ 85 (355)
T cd05804 8 GHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDYP-RDLLALKL-HLG 85 (355)
T ss_pred HHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCC-CcHHHHHH-hHH
Confidence 344444444455555554444444333211 1111 1111223334556667777777766665532 23333331 111
Q ss_pred HH----HcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 004470 511 LC----KAGNILQAVKLMEDMEVAGFHPDTFTYTTIMDAYCKSGEMVKAHELLRDMLDKGLQPSVVTFNVLMNGFCMSGM 586 (751)
Q Consensus 511 ~~----~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~ 586 (751)
+. ..+..+.+.+.+.... ...+........+...+...|++++|...+++..+.. +.+...+..+...+...|+
T Consensus 86 ~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~-p~~~~~~~~la~i~~~~g~ 163 (355)
T cd05804 86 AFGLGDFSGMRDHVARVLPLWA-PENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELN-PDDAWAVHAVAHVLEMQGR 163 (355)
T ss_pred HHHhcccccCchhHHHHHhccC-cCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCC
Confidence 11 2344444444444311 1112223444455566777777777777777777664 4455666777777777778
Q ss_pred hhHHHHHHHHHHHcCC-CCCH--hhHHHHHHHHHHcCCHHHHHHHHHHHHHCCC-CCCHHHH-H--HHHHHHHhcCCHHH
Q 004470 587 IEDGEKLLKWMLEKGL-KPNA--ATYNPLIKQHCLRNDMRTTAKIYKGMCAQGI-TPDGNTY-N--ILLQGHCKARNMKE 659 (751)
Q Consensus 587 ~~~A~~l~~~~~~~g~-~p~~--~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~-~p~~~~~-~--~li~~~~~~g~~~~ 659 (751)
+++|...+++...... .|+. ..|..+...+...|+.++|.+++++...... .+..... + .++.-+...|..+.
T Consensus 164 ~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~ 243 (355)
T cd05804 164 FKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDV 243 (355)
T ss_pred HHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCCh
Confidence 8888877777766422 1222 2344566677778888888888877754321 1111111 1 22333334443332
Q ss_pred HHHH--H-HHHHHCCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC--------CCHHHHHHHHHHHHhcCCh
Q 004470 660 AWFL--H-KEMVQKGF-NLTTSSYNALIKGFLKRKKYLEARELFEEMRRGGLV--------ADREIYYFFVDINFEEGNT 727 (751)
Q Consensus 660 A~~~--~-~~~~~~~~-~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--------~~~~~~~~l~~~~~~~g~~ 727 (751)
+.+. + ........ ..........+.++...|+.++|...++.+...... .........+..+...|++
T Consensus 244 ~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~ 323 (355)
T cd05804 244 GDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNY 323 (355)
T ss_pred HHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCH
Confidence 2222 1 11111100 111222235677778899999999999988763212 0123333445677899999
Q ss_pred hHHHHHHHHHHHcC
Q 004470 728 EITLELCDAAIECY 741 (751)
Q Consensus 728 ~~A~~~~~~~~~~~ 741 (751)
++|.+.+.++++..
T Consensus 324 ~~A~~~L~~al~~a 337 (355)
T cd05804 324 ATALELLGPVRDDL 337 (355)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999998876
No 99
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.08 E-value=4.1e-08 Score=89.29 Aligned_cols=188 Identities=14% Similarity=0.039 Sum_probs=95.7
Q ss_pred cCChHHHHHHHHhhhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHcCCCCCchhhhHHHHHHHHHhhhcCCCChhh
Q 004470 108 RSDYRLVLDFFDWACLRREPILEARCIVVQISVAAKDLKTAHGLIHDFWAKPNLDASIAFTHFVERLIYTYKDWGSDPHV 187 (751)
Q Consensus 108 ~~~~~~al~~f~~~~~~~~~~~~~~~~~~~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 187 (751)
++|+..|..-++.+.+++|.+..++..+++++...|..+.|..-++++++.. |.+-.|
T Consensus 48 ~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~----------------------p~~GdV 105 (250)
T COG3063 48 QGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLA----------------------PNNGDV 105 (250)
T ss_pred CCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcC----------------------CCccch
Confidence 4555555555555555555555555555555555555555555555555543 344445
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhCCCccCHHhHHHHHHHHHhCCCCHHHHHHHHHhchhcCCCcCHHHHHHHHHHHH
Q 004470 188 FDIFFQVLVEARKLNEARKLFEKLLNYGLVISVDSCNLFLSRLSNTCDGLRMVVKSFTEFPELGICWNTASYNIMIHCLC 267 (751)
Q Consensus 188 ~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 267 (751)
.+..+.-+|.+|++++|...|++++..-..+.......-++.+..+.|+.+.|...|++..+..+. +..+.-.+.....
T Consensus 106 LNNYG~FLC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~-~~~~~l~~a~~~~ 184 (250)
T COG3063 106 LNNYGAFLCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQ-FPPALLELARLHY 184 (250)
T ss_pred hhhhhHHHHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcC-CChHHHHHHHHHH
Confidence 555555555555555555555555543222222111222222333455555555555555555433 3444445555555
Q ss_pred hcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004470 268 RFGKIKEAHLLLLQMELRGCSPDVVSFSTIINGYCYLGELQRVLKLIEEMQI 319 (751)
Q Consensus 268 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 319 (751)
+.|++-.|..+++.....+. ++..+.-..|..--..|+.+.+-+.=..+.+
T Consensus 185 ~~~~y~~Ar~~~~~~~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r 235 (250)
T COG3063 185 KAGDYAPARLYLERYQQRGG-AQAESLLLGIRIAKRLGDRAAAQRYQAQLQR 235 (250)
T ss_pred hcccchHHHHHHHHHHhccc-ccHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 55555555555555554443 4555555555555555555555444444433
No 100
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.03 E-value=8.1e-07 Score=83.54 Aligned_cols=305 Identities=11% Similarity=0.019 Sum_probs=199.7
Q ss_pred ChHHHHHHHHhhhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHcCCCCCchhhhHHHHHHHHHhhhcCCCChhhHH
Q 004470 110 DYRLVLDFFDWACLRREPILEARCIVVQISVAAKDLKTAHGLIHDFWAKPNLDASIAFTHFVERLIYTYKDWGSDPHVFD 189 (751)
Q Consensus 110 ~~~~al~~f~~~~~~~~~~~~~~~~~~~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 189 (751)
....|.+....-..+.|.+..+...+++.+....+|..|...++++.... |.-..--.
T Consensus 25 ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~----------------------P~~~qYrl 82 (459)
T KOG4340|consen 25 RYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLH----------------------PELEQYRL 82 (459)
T ss_pred hHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC----------------------hHHHHHHH
Confidence 44566666666666677788889999999999999999999998876543 11111112
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhCCCccCHH-hHHHHHHHHHhCCCCHHHHHHHHHhchhcCCCcCHHHHHHHHHHHHh
Q 004470 190 IFFQVLVEARKLNEARKLFEKLLNYGLVISVD-SCNLFLSRLSNTCDGLRMVVKSFTEFPELGICWNTASYNIMIHCLCR 268 (751)
Q Consensus 190 ~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~-~~~~ll~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 268 (751)
--++.+.+.+.+.+|+.+...|... |... .+..+-+++....+++..++.+.++....| +..+.+-..-...+
T Consensus 83 Y~AQSLY~A~i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en---~Ad~~in~gCllyk 156 (459)
T KOG4340|consen 83 YQAQSLYKACIYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSEN---EADGQINLGCLLYK 156 (459)
T ss_pred HHHHHHHHhcccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCC---ccchhccchheeec
Confidence 2467788999999999999988653 3332 233333444446788888888888887543 44555556666789
Q ss_pred cCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCccc----HHHHHHHHHhcCCHHH
Q 004470 269 FGKIKEAHLLLLQMELRGCSPDVVSFSTIINGYCYLGELQRVLKLIEEMQIKGLKPNPYT----YNSVVRLLCKTSKVVE 344 (751)
Q Consensus 269 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~----~~~li~~~~~~g~~~~ 344 (751)
.|++++|.+-|+...+.+--.....||..+. ..+.|+++.|++...+++++|++..+.. -+..+++- ..|+
T Consensus 157 egqyEaAvqkFqaAlqvsGyqpllAYniALa-Hy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvr-svgN--- 231 (459)
T KOG4340|consen 157 EGQYEAAVQKFQAALQVSGYQPLLAYNLALA-HYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVR-SVGN--- 231 (459)
T ss_pred cccHHHHHHHHHHHHhhcCCCchhHHHHHHH-HHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchh-cccc---
Confidence 9999999999999887654455677876654 4577999999999999999987633221 01111100 0010
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 004470 345 AETILREMMNQGIVPDNVIYTTLIDGFCKMGNVAAAYRLFDEMRGLN-IIPDLLTYTAIICGFCLTGKMVEAEKLFHEML 423 (751)
Q Consensus 345 A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 423 (751)
-..+.. .+ =+.++|.-...+.+.|+++.|.+.+-+|..+. -..|.+|...+.-. -..+++.+..+-+.-++
T Consensus 232 t~~lh~----Sa---l~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~-n~~~~p~~g~~KLqFLL 303 (459)
T KOG4340|consen 232 TLVLHQ----SA---LVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALM-NMDARPTEGFEKLQFLL 303 (459)
T ss_pred hHHHHH----HH---HHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHh-cccCCccccHHHHHHHH
Confidence 000111 00 12245555556778899999999998886543 23456666554321 23455666666666666
Q ss_pred HCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHH
Q 004470 424 GRGLEPDEIVYTALIDGYCKAGGMKKAFSLHNN 456 (751)
Q Consensus 424 ~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 456 (751)
..+. -...||..++-.||+..-++.|-.++.+
T Consensus 304 ~~nP-fP~ETFANlLllyCKNeyf~lAADvLAE 335 (459)
T KOG4340|consen 304 QQNP-FPPETFANLLLLYCKNEYFDLAADVLAE 335 (459)
T ss_pred hcCC-CChHHHHHHHHHHhhhHHHhHHHHHHhh
Confidence 6533 3567888888899999888888887765
No 101
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=99.00 E-value=7.9e-05 Score=80.98 Aligned_cols=225 Identities=14% Similarity=0.025 Sum_probs=135.5
Q ss_pred hcCChHHHHHHHHHHHcCCCCCchhhhHHHHHHHHHhhhcCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCccCH
Q 004470 141 AAKDLKTAHGLIHDFWAKPNLDASIAFTHFVERLIYTYKDWGSDPHVFDIFFQVLVEARKLNEARKLFEKLLNYGLVISV 220 (751)
Q Consensus 141 ~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~ 220 (751)
.+++|..|.+.+.++++.. |..+.+--.=+-.+.|.|+.++|..+++..-.. .++.
T Consensus 21 d~~qfkkal~~~~kllkk~----------------------Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~--~~~D 76 (932)
T KOG2053|consen 21 DSSQFKKALAKLGKLLKKH----------------------PNALYAKVLKALSLFRLGKGDEALKLLEALYGL--KGTD 76 (932)
T ss_pred hhHHHHHHHHHHHHHHHHC----------------------CCcHHHHHHHHHHHHHhcCchhHHHHHhhhccC--CCCc
Confidence 4677888888888877764 444444444455677889999999887776544 3433
Q ss_pred HhHHHHHHHHHhCCCCHHHHHHHHHhchhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHH
Q 004470 221 DSCNLFLSRLSNTCDGLRMVVKSFTEFPELGICWNTASYNIMIHCLCRFGKIKEAHLLLLQMELRGCSPDVVSFSTIING 300 (751)
Q Consensus 221 ~~~~~ll~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~ 300 (751)
......+..+++..|..++|..+|+.+.... |+......+-.+|.|.+.+.+-.+.--+|-+ .++-+...+=++++.
T Consensus 77 ~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~~~--P~eell~~lFmayvR~~~yk~qQkaa~~LyK-~~pk~~yyfWsV~Sl 153 (932)
T KOG2053|consen 77 DLTLQFLQNVYRDLGKLDEAVHLYERANQKY--PSEELLYHLFMAYVREKSYKKQQKAALQLYK-NFPKRAYYFWSVISL 153 (932)
T ss_pred hHHHHHHHHHHHHHhhhhHHHHHHHHHHhhC--CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCCcccchHHHHHHH
Confidence 3344456666668889999999999888774 4566666777788887776654433333333 122234444444444
Q ss_pred HHhcC-C---------HHHHHHHHHHHHHCC-CCCCcccHHHHHHHHHhcCCHHHHHHHH-HHHHHCCCCCCHHHHHHHH
Q 004470 301 YCYLG-E---------LQRVLKLIEEMQIKG-LKPNPYTYNSVVRLLCKTSKVVEAETIL-REMMNQGIVPDNVIYTTLI 368 (751)
Q Consensus 301 ~~~~g-~---------~~~A~~~~~~m~~~g-~~p~~~~~~~li~~~~~~g~~~~A~~~~-~~m~~~g~~p~~~~~~~li 368 (751)
+.+.- . ..-|.+.++.+.+.+ ---+..-...-...+...|++++|.+++ ....+.-..-+...-+.-+
T Consensus 154 ilqs~~~~~~~~~~i~l~LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~ 233 (932)
T KOG2053|consen 154 ILQSIFSENELLDPILLALAEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKL 233 (932)
T ss_pred HHHhccCCcccccchhHHHHHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHH
Confidence 44321 1 223445555555443 1111122222334555678888888888 3343332233344445666
Q ss_pred HHHHHcCCHHHHHHHHHHHHhCCC
Q 004470 369 DGFCKMGNVAAAYRLFDEMRGLNI 392 (751)
Q Consensus 369 ~~~~~~g~~~~A~~~~~~m~~~~~ 392 (751)
+.+.+.+++.+..++-.++..+|.
T Consensus 234 dllk~l~~w~~l~~l~~~Ll~k~~ 257 (932)
T KOG2053|consen 234 DLLKLLNRWQELFELSSRLLEKGN 257 (932)
T ss_pred HHHHHhcChHHHHHHHHHHHHhCC
Confidence 777788888888888888877764
No 102
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.99 E-value=1.5e-06 Score=81.82 Aligned_cols=291 Identities=13% Similarity=0.094 Sum_probs=187.0
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhCCCccCHHhHHHHHHHHHhCCCCHHHHHHHHHhchhcCCCcCHHHHHH-HHHHH
Q 004470 188 FDIFFQVLVEARKLNEARKLFEKLLNYGLVISVDSCNLFLSRLSNTCDGLRMVVKSFTEFPELGICWNTASYNI-MIHCL 266 (751)
Q Consensus 188 ~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-li~~~ 266 (751)
|+..+..+.+..++++|++++..-.+. .|.......+|+-++....++..|...|++....-|. ..-|.. -..++
T Consensus 13 ftaviy~lI~d~ry~DaI~~l~s~~Er--~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~--~~qYrlY~AQSL 88 (459)
T KOG4340|consen 13 FTAVVYRLIRDARYADAIQLLGSELER--SPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPE--LEQYRLYQAQSL 88 (459)
T ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHhc--CccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChH--HHHHHHHHHHHH
Confidence 556666677888888888888877776 5666666777777776677788888888888766433 333322 24566
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHH--HHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCHHH
Q 004470 267 CRFGKIKEAHLLLLQMELRGCSPDVVSFSTIING--YCYLGELQRVLKLIEEMQIKGLKPNPYTYNSVVRLLCKTSKVVE 344 (751)
Q Consensus 267 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~--~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~ 344 (751)
.+.+.+.+|+.+...|.+. |+...-..-+.+ ....+++..+..+.++....| +..+.+...-...+.|++++
T Consensus 89 Y~A~i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en---~Ad~~in~gCllykegqyEa 162 (459)
T KOG4340|consen 89 YKACIYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSEN---EADGQINLGCLLYKEGQYEA 162 (459)
T ss_pred HHhcccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCC---ccchhccchheeeccccHHH
Confidence 7888889999988888763 333322222222 335678888888888766432 45555555566678899999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCC-------------CCHH--------------
Q 004470 345 AETILREMMNQGIVPDNVIYTTLIDGFCKMGNVAAAYRLFDEMRGLNII-------------PDLL-------------- 397 (751)
Q Consensus 345 A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~-------------p~~~-------------- 397 (751)
|.+-|....+.|--....+||.-+. ..+.|+.+.|++...++.++|++ ||+.
T Consensus 163 AvqkFqaAlqvsGyqpllAYniALa-Hy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~ 241 (459)
T KOG4340|consen 163 AVQKFQAALQVSGYQPLLAYNLALA-HYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALV 241 (459)
T ss_pred HHHHHHHHHhhcCCCchhHHHHHHH-HHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHHHH
Confidence 9999988877543334556765544 44678889999999988887654 1211
Q ss_pred -HHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 004470 398 -TYTAIICGFCLTGKMVEAEKLFHEMLGR-GLEPDEIVYTALIDGYCKAGGMKKAFSLHNNMVHMRLTPNVVTYTALADG 475 (751)
Q Consensus 398 -~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~ 475 (751)
.+|.-...+.+.|+++.|.+.+.+|.-+ ....|++|...+.-.- ..+++.+..+-+.-+.+..+ -...||..++-.
T Consensus 242 eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n-~~~~p~~g~~KLqFLL~~nP-fP~ETFANlLll 319 (459)
T KOG4340|consen 242 EAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMN-MDARPTEGFEKLQFLLQQNP-FPPETFANLLLL 319 (459)
T ss_pred HHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhc-ccCCccccHHHHHHHHhcCC-CChHHHHHHHHH
Confidence 1222223445667788887777777544 2234566655443221 23445555555555555544 345677777778
Q ss_pred HHhcCCHHHHHHHHHH
Q 004470 476 LCKSGELETANELLHE 491 (751)
Q Consensus 476 ~~~~g~~~~A~~l~~~ 491 (751)
||+..-++.|.+++.+
T Consensus 320 yCKNeyf~lAADvLAE 335 (459)
T KOG4340|consen 320 YCKNEYFDLAADVLAE 335 (459)
T ss_pred HhhhHHHhHHHHHHhh
Confidence 8888777777777654
No 103
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.90 E-value=9.5e-06 Score=96.91 Aligned_cols=337 Identities=10% Similarity=0.052 Sum_probs=206.2
Q ss_pred HHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC------CCC--HHHHHHHHHHH
Q 004470 370 GFCKMGNVAAAYRLFDEMRGLNIIPDLLTYTAIICGFCLTGKMVEAEKLFHEMLGRGL------EPD--EIVYTALIDGY 441 (751)
Q Consensus 370 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~------~p~--~~~~~~li~~~ 441 (751)
.+...|+++.+...++.+.......+..........+...|++++|..++......-- .+. ......+...+
T Consensus 383 ~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~ 462 (903)
T PRK04841 383 SLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVA 462 (903)
T ss_pred HHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHH
Confidence 3455677777777766552211111122223334455677889998888887654310 111 11222334455
Q ss_pred HHcCChhHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCC-CCHHHHHHHHHHHH
Q 004470 442 CKAGGMKKAFSLHNNMVHMRLTPNV----VTYTALADGLCKSGELETANELLHEMCRK----GLQ-LNIYTYNSIVNGLC 512 (751)
Q Consensus 442 ~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~li~~~~~~g~~~~A~~l~~~m~~~----g~~-~~~~~~~~li~~~~ 512 (751)
...|++++|...+++..+.-...+. ...+.+...+...|++++|...+++.... |.. .....+..+...+.
T Consensus 463 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~ 542 (903)
T PRK04841 463 INDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILF 542 (903)
T ss_pred HhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHH
Confidence 6788999999998887763212121 24455666778889999999888887643 111 11234455666778
Q ss_pred HcCCHHHHHHHHHHHHH----CCCC--C-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCCC--CHHHHHHHHHHH
Q 004470 513 KAGNILQAVKLMEDMEV----AGFH--P-DTFTYTTIMDAYCKSGEMVKAHELLRDMLDK--GLQP--SVVTFNVLMNGF 581 (751)
Q Consensus 513 ~~g~~~~A~~~~~~~~~----~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--~~~p--~~~~~~~li~~~ 581 (751)
..|++++|...+++... .+.. + ....+..+...+...|++++|...+.+.... ...+ ....+..+...+
T Consensus 543 ~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~ 622 (903)
T PRK04841 543 AQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKIS 622 (903)
T ss_pred HCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHH
Confidence 89999999988887654 2211 1 2233445566677789999999888877542 1112 233444566677
Q ss_pred HhcCChhHHHHHHHHHHHcCCCC-CHhhH-----HHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHH
Q 004470 582 CMSGMIEDGEKLLKWMLEKGLKP-NAATY-----NPLIKQHCLRNDMRTTAKIYKGMCAQGITPD---GNTYNILLQGHC 652 (751)
Q Consensus 582 ~~~g~~~~A~~l~~~~~~~g~~p-~~~~~-----~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~---~~~~~~li~~~~ 652 (751)
...|+.++|...+.......... ....+ ...+..+...|+.+.|.+++........... ...+..+...+.
T Consensus 623 ~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~ 702 (903)
T PRK04841 623 LARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQI 702 (903)
T ss_pred HHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHH
Confidence 78899999999888875431111 11111 1122344567889998888776554211111 111345677788
Q ss_pred hcCCHHHHHHHHHHHHHC----CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 004470 653 KARNMKEAWFLHKEMVQK----GFNLT-TSSYNALIKGFLKRKKYLEARELFEEMRRGG 706 (751)
Q Consensus 653 ~~g~~~~A~~~~~~~~~~----~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 706 (751)
..|+.++|...++++... |...+ ..++..+..++.+.|+.++|...+.++++..
T Consensus 703 ~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la 761 (903)
T PRK04841 703 LLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLA 761 (903)
T ss_pred HcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 899999999999887763 22222 2456677888889999999999999998754
No 104
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.89 E-value=0.00028 Score=76.92 Aligned_cols=519 Identities=14% Similarity=0.095 Sum_probs=291.8
Q ss_pred HhcCChhHHHHHHHHHHhCCCccCHHhHHHHHHHHH-hCCCCHHHHHHHHHhchhcCCCcCHHHHHHHHHHHHhcCCHHH
Q 004470 196 VEARKLNEARKLFEKLLNYGLVISVDSCNLFLSRLS-NTCDGLRMVVKSFTEFPELGICWNTASYNIMIHCLCRFGKIKE 274 (751)
Q Consensus 196 ~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~l~-~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 274 (751)
...+++.+|+....++.+. .|+.... .++.++. .+.|+.++|...++.....+.. |..|...+-.+|-..|+.++
T Consensus 20 ld~~qfkkal~~~~kllkk--~Pn~~~a-~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~-D~~tLq~l~~~y~d~~~~d~ 95 (932)
T KOG2053|consen 20 LDSSQFKKALAKLGKLLKK--HPNALYA-KVLKALSLFRLGKGDEALKLLEALYGLKGT-DDLTLQFLQNVYRDLGKLDE 95 (932)
T ss_pred hhhHHHHHHHHHHHHHHHH--CCCcHHH-HHHHHHHHHHhcCchhHHHHHhhhccCCCC-chHHHHHHHHHHHHHhhhhH
Confidence 5678899999999999887 6776544 4444443 4679999999888887776655 89999999999999999999
Q ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCC----------HHH
Q 004470 275 AHLLLLQMELRGCSPDVVSFSTIINGYCYLGELQRVLKLIEEMQIKGLKPNPYTYNSVVRLLCKTSK----------VVE 344 (751)
Q Consensus 275 A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~----------~~~ 344 (751)
|..+|++.... .|+......+..+|.+.+++.+-.+.--+|-+. ++-+.+.+=+++..+...-. ..-
T Consensus 96 ~~~~Ye~~~~~--~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~-~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~L 172 (932)
T KOG2053|consen 96 AVHLYERANQK--YPSEELLYHLFMAYVREKSYKKQQKAALQLYKN-FPKRAYYFWSVISLILQSIFSENELLDPILLAL 172 (932)
T ss_pred HHHHHHHHHhh--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCcccchHHHHHHHHHHhccCCcccccchhHHH
Confidence 99999998765 377777888889999999988776666666553 44466666666665554211 234
Q ss_pred HHHHHHHHHHCC-CCCCHHHHHHHHHHHHHcCCHHHHHHHHH-HHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 004470 345 AETILREMMNQG-IVPDNVIYTTLIDGFCKMGNVAAAYRLFD-EMRGLNIIPDLLTYTAIICGFCLTGKMVEAEKLFHEM 422 (751)
Q Consensus 345 A~~~~~~m~~~g-~~p~~~~~~~li~~~~~~g~~~~A~~~~~-~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 422 (751)
|.+.++.+.+.+ ..-+..-.......+...|++++|.+++. ...+.-...+...-+.-+..+...+++.+..++-.++
T Consensus 173 A~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~L 252 (932)
T KOG2053|consen 173 AEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRL 252 (932)
T ss_pred HHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHH
Confidence 667777777654 22222223333445667889999999983 3333333334445556667788889999999998888
Q ss_pred HHCCCCCCHHHHHHHHHHH----------------HHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHH---HHhcCCHH
Q 004470 423 LGRGLEPDEIVYTALIDGY----------------CKAGGMKKAFSLHNNMVHMRLTPNVVTYTALADG---LCKSGELE 483 (751)
Q Consensus 423 ~~~~~~p~~~~~~~li~~~----------------~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~---~~~~g~~~ 483 (751)
+..|.. | |...++.+ ...+..+...+...+...... ...|-+-+.. +-.-|+.+
T Consensus 253 l~k~~D-d---y~~~~~sv~klLe~~~~~~a~~~~s~~~~l~~~~ek~~~~i~~~~---Rgp~LA~lel~kr~~~~gd~e 325 (932)
T KOG2053|consen 253 LEKGND-D---YKIYTDSVFKLLELLNKEPAEAAHSLSKSLDECIEKAQKNIGSKS---RGPYLARLELDKRYKLIGDSE 325 (932)
T ss_pred HHhCCc-c---hHHHHHHHHHHHHhcccccchhhhhhhhhHHHHHHHHHHhhcccc---cCcHHHHHHHHHHhcccCChH
Confidence 887533 2 22222211 112223333333333322211 1122222222 23446666
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH-------HHHHHHHHHHHcCC-----
Q 004470 484 TANELLHEMCRKGLQLNIYTYNSIVNGLCKAGNILQAVKLMEDMEVAGFHPDTF-------TYTTIMDAYCKSGE----- 551 (751)
Q Consensus 484 ~A~~l~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-------~~~~li~~~~~~g~----- 551 (751)
++.-.|-+- -|..| .|..=+..|...=..+.-..++...... .++.. -+...+..-.-.|.
T Consensus 326 e~~~~y~~k--fg~kp---cc~~Dl~~yl~~l~~~q~~~l~~~l~~~--~~~~s~~~k~l~~h~c~l~~~rl~G~~~~l~ 398 (932)
T KOG2053|consen 326 EMLSYYFKK--FGDKP---CCAIDLNHYLGHLNIDQLKSLMSKLVLA--DDDSSGDEKVLQQHLCVLLLLRLLGLYEKLP 398 (932)
T ss_pred HHHHHHHHH--hCCCc---HhHhhHHHhhccCCHHHHHHHHHHhhcc--CCcchhhHHHHHHHHHHHHHHHHhhccccCC
Confidence 655444322 12121 1111122222222233333344333322 11111 01111111111221
Q ss_pred HHHHHHHHHHHH---hCC------CCCCH---------HHHHHHHHHHHhcCChh---HHHHHHHHHHHcCCCCCHhhHH
Q 004470 552 MVKAHELLRDML---DKG------LQPSV---------VTFNVLMNGFCMSGMIE---DGEKLLKWMLEKGLKPNAATYN 610 (751)
Q Consensus 552 ~~~A~~~~~~~~---~~~------~~p~~---------~~~~~li~~~~~~g~~~---~A~~l~~~~~~~g~~p~~~~~~ 610 (751)
-+.-..++.+.. ++| +-|+. .+-+.|++.+-+.++.. +|+-+++.-.... +-|..+-.
T Consensus 399 ad~i~a~~~kl~~~ye~gls~~K~ll~TE~~~g~~~llLav~~Lid~~rktnd~~~l~eaI~LLE~glt~s-~hnf~~KL 477 (932)
T KOG2053|consen 399 ADSILAYVRKLKLTYEKGLSLSKDLLPTEYSFGDELLLLAVNHLIDLWRKTNDLTDLFEAITLLENGLTKS-PHNFQTKL 477 (932)
T ss_pred hHHHHHHHHHHHHHHhccccccccccccccccHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhcC-CccHHHHH
Confidence 222233332221 222 12222 23466777888877655 3444444444431 22444556
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 004470 611 PLIKQHCLRNDMRTTAKIYKGMCAQGITPDGNTYNILLQGHCKARNMKEAWFLHKEMVQKGFNLTTSSYNALIKGFLKRK 690 (751)
Q Consensus 611 ~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 690 (751)
.+++.|+-.|-+..|.++|+.+.-+.+..|..-|- +..-+...|++..+...++.....--..-..+-..++ .-.+.|
T Consensus 478 lLiriY~~lGa~p~a~~~y~tLdIK~IQ~DTlgh~-~~~~~~t~g~~~~~s~~~~~~lkfy~~~~kE~~eyI~-~AYr~g 555 (932)
T KOG2053|consen 478 LLIRIYSYLGAFPDAYELYKTLDIKNIQTDTLGHL-IFRRAETSGRSSFASNTFNEHLKFYDSSLKETPEYIA-LAYRRG 555 (932)
T ss_pred HHHHHHHHhcCChhHHHHHHhcchHHhhhccchHH-HHHHHHhcccchhHHHHHHHHHHHHhhhhhhhHHHHH-HHHHcC
Confidence 77888988899999999999887776776665553 3455667788888888888776531110112222233 334567
Q ss_pred CHHHHHHHHHH---HHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 004470 691 KYLEARELFEE---MRRGGLVADREIYYFFVDINFEEGNTEITLELCDAAI 738 (751)
Q Consensus 691 ~~~~A~~~~~~---~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 738 (751)
.|.+..++..- +..........+-+.....++..++.++-.+.++.+-
T Consensus 556 ~ySkI~em~~fr~rL~~S~q~~a~~VE~~~l~ll~~~~~~~q~~~~~~~~~ 606 (932)
T KOG2053|consen 556 AYSKIPEMLAFRDRLMHSLQKWACRVENLQLSLLCNADRGTQLLKLLESMK 606 (932)
T ss_pred chhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHhccc
Confidence 77665554322 2111111122333455566777787777776666554
No 105
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.86 E-value=0.0002 Score=73.57 Aligned_cols=186 Identities=16% Similarity=0.155 Sum_probs=127.9
Q ss_pred hhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 004470 447 MKKAFSLHNNMVHMRLTPNVVTYTALADGLCKSG---ELETANELLHEMCRKGLQLNIYTYNSIVNGLCKAGNILQAVKL 523 (751)
Q Consensus 447 ~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g---~~~~A~~l~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~ 523 (751)
.+++..++++....-...+..+|..+.+.--..- ..+...+.++++...-..--..+|..+++...+..-++.|..+
T Consensus 309 t~e~~~~yEr~I~~l~~~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~i 388 (656)
T KOG1914|consen 309 TDEAASIYERAIEGLLKENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKI 388 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHH
Confidence 3455556665554333334444444443222222 2555566666665542222334677778888888888999999
Q ss_pred HHHHHHCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCC
Q 004470 524 MEDMEVAGFHP-DTFTYTTIMDAYCKSGEMVKAHELLRDMLDKGLQPSVVTFNVLMNGFCMSGMIEDGEKLLKWMLEKGL 602 (751)
Q Consensus 524 ~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~g~ 602 (751)
|.++.+.+..+ ++.++++++..|| .++..-|.++|+.-++. ...+..--...++-+...|+-..|..+|++.+..++
T Consensus 389 F~kaR~~~r~~hhVfVa~A~mEy~c-skD~~~AfrIFeLGLkk-f~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l 466 (656)
T KOG1914|consen 389 FKKAREDKRTRHHVFVAAALMEYYC-SKDKETAFRIFELGLKK-FGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVL 466 (656)
T ss_pred HHHHhhccCCcchhhHHHHHHHHHh-cCChhHHHHHHHHHHHh-cCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccC
Confidence 99998877666 7778888888776 57788899999876654 344555556677777888888999999999988866
Q ss_pred CCCH--hhHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 004470 603 KPNA--ATYNPLIKQHCLRNDMRTTAKIYKGMCA 634 (751)
Q Consensus 603 ~p~~--~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 634 (751)
.||. .+|..++.--..-|++..+.++-+++..
T Consensus 467 ~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~ 500 (656)
T KOG1914|consen 467 SADKSKEIWDRMLEYESNVGDLNSILKLEKRRFT 500 (656)
T ss_pred ChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 6553 6889999888889999988888877665
No 106
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.85 E-value=1.5e-07 Score=93.83 Aligned_cols=149 Identities=17% Similarity=0.136 Sum_probs=81.8
Q ss_pred HHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHH----HcC
Q 004470 545 AYCKSGEMVKAHELLRDMLDKGLQPSVVTFNVLMNGFCMSGMIEDGEKLLKWMLEKGLKPNAATYNPLIKQHC----LRN 620 (751)
Q Consensus 545 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~g~~p~~~~~~~l~~~~~----~~g 620 (751)
.+...|++++|++++... .+.......+..|.+.++++.|.+.++.|.+. ..|.. ...+..++. ...
T Consensus 111 i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~--~eD~~-l~qLa~awv~l~~g~e 181 (290)
T PF04733_consen 111 ILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNMQQI--DEDSI-LTQLAEAWVNLATGGE 181 (290)
T ss_dssp HHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCC--SCCHH-HHHHHHHHHHHHHTTT
T ss_pred HHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCcHH-HHHHHHHHHHHHhCch
Confidence 344556666665555431 24455555566666666666666666666543 22322 222222221 122
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH-HHHHHHH
Q 004470 621 DMRTTAKIYKGMCAQGITPDGNTYNILLQGHCKARNMKEAWFLHKEMVQKGFNLTTSSYNALIKGFLKRKKY-LEARELF 699 (751)
Q Consensus 621 ~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~-~~A~~~~ 699 (751)
++.+|..+|+++.+. ..+++.+.+.+..++...|++++|.+++.++.+.++. ++.+...++.+....|+. +.+.+++
T Consensus 182 ~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~-~~d~LaNliv~~~~~gk~~~~~~~~l 259 (290)
T PF04733_consen 182 KYQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPN-DPDTLANLIVCSLHLGKPTEAAERYL 259 (290)
T ss_dssp CCCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CC-HHHHHHHHHHHHHHTT-TCHHHHHHH
T ss_pred hHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccC-CHHHHHHHHHHHHHhCCChhHHHHHH
Confidence 466677777776543 3456666777777777777777777777776665544 566666666666666666 5556666
Q ss_pred HHHHH
Q 004470 700 EEMRR 704 (751)
Q Consensus 700 ~~~~~ 704 (751)
.++..
T Consensus 260 ~qL~~ 264 (290)
T PF04733_consen 260 SQLKQ 264 (290)
T ss_dssp HHCHH
T ss_pred HHHHH
Confidence 66655
No 107
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.83 E-value=8.5e-07 Score=91.35 Aligned_cols=237 Identities=10% Similarity=-0.041 Sum_probs=166.0
Q ss_pred CccccCCchhHHHHHHHhhcCChHHHHHHHHhhhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHcCCCCCchhhhH
Q 004470 89 KPFESKFRSDHLIWVLMDIRSDYRLVLDFFDWACLRREPILEARCIVVQISVAAKDLKTAHGLIHDFWAKPNLDASIAFT 168 (751)
Q Consensus 89 ~~~~~~~~~~~~~~~l~~~~~~~~~al~~f~~~~~~~~~~~~~~~~~~~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~ 168 (751)
.|+..+.+|-..-..+.+ .++...|.=+|+-+.++.|.|.++++.++.+.....+=..|+.-|.+++..+
T Consensus 280 Np~~~~pdPf~eG~~lm~-nG~L~~A~LafEAAVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~Ld--------- 349 (579)
T KOG1125|consen 280 NPYIDHPDPFKEGCNLMK-NGDLSEAALAFEAAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLELD--------- 349 (579)
T ss_pred CcccCCCChHHHHHHHHh-cCCchHHHHHHHHHHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcC---------
Confidence 455555566555444443 4566677778999999999999999999999998888889999999998887
Q ss_pred HHHHHHHHhhhcCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCccCHHhHHH-----HH---HHHHhCCCCHHHH
Q 004470 169 HFVERLIYTYKDWGSDPHVFDIFFQVLVEARKLNEARKLFEKLLNYGLVISVDSCNL-----FL---SRLSNTCDGLRMV 240 (751)
Q Consensus 169 ~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~-----ll---~~l~~~~~~~~~a 240 (751)
|.+-.+...|+..|...|.-.+|++.++.-+... |.-..... .. +.+. ....+...
T Consensus 350 -------------P~NleaLmaLAVSytNeg~q~~Al~~L~~Wi~~~--p~y~~l~~a~~~~~~~~~~s~~-~~~~l~~i 413 (579)
T KOG1125|consen 350 -------------PTNLEALMALAVSYTNEGLQNQALKMLDKWIRNK--PKYVHLVSAGENEDFENTKSFL-DSSHLAHI 413 (579)
T ss_pred -------------CccHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhC--ccchhccccCccccccCCcCCC-CHHHHHHH
Confidence 7788889999999999999999999999886652 21100000 00 0110 11223445
Q ss_pred HHHHHhchhc-CCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004470 241 VKSFTEFPEL-GICWNTASYNIMIHCLCRFGKIKEAHLLLLQMELRGCSPDVVSFSTIINGYCYLGELQRVLKLIEEMQI 319 (751)
Q Consensus 241 ~~~~~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 319 (751)
.+.|-++... +..+|+.++..|.-.|--.|++++|++.|+..+...+ -|...||.|...+....+.++|+..|.+.++
T Consensus 414 ~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~v~P-nd~~lWNRLGAtLAN~~~s~EAIsAY~rALq 492 (579)
T KOG1125|consen 414 QELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDCFEAALQVKP-NDYLLWNRLGATLANGNRSEEAISAYNRALQ 492 (579)
T ss_pred HHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHHHHHHHhcCC-chHHHHHHhhHHhcCCcccHHHHHHHHHHHh
Confidence 5555555433 3235777777777778888888888888888776543 3567788888888888888888888888877
Q ss_pred CCCCCC-cccHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004470 320 KGLKPN-PYTYNSVVRLLCKTSKVVEAETILREMMN 354 (751)
Q Consensus 320 ~g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 354 (751)
. +|+ +.....|.-.|...|.+++|.+.|-..+.
T Consensus 493 L--qP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~ 526 (579)
T KOG1125|consen 493 L--QPGYVRVRYNLGISCMNLGAYKEAVKHLLEALS 526 (579)
T ss_pred c--CCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHH
Confidence 5 454 44455566677788888888877766543
No 108
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.81 E-value=2.9e-07 Score=94.64 Aligned_cols=219 Identities=14% Similarity=0.087 Sum_probs=120.1
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHH
Q 004470 475 GLCKSGELETANELLHEMCRKGLQLNIYTYNSIVNGLCKAGNILQAVKLMEDMEVAGFHPDTFTYTTIMDAYCKSGEMVK 554 (751)
Q Consensus 475 ~~~~~g~~~~A~~l~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 554 (751)
-+.+.|++.+|.-.|+..+++++. +...|..|.......++-..|+..+.+..+.. +.+......|.-.|...|.-.+
T Consensus 294 ~lm~nG~L~~A~LafEAAVkqdP~-haeAW~~LG~~qaENE~E~~ai~AL~rcl~Ld-P~NleaLmaLAVSytNeg~q~~ 371 (579)
T KOG1125|consen 294 NLMKNGDLSEAALAFEAAVKQDPQ-HAEAWQKLGITQAENENEQNAISALRRCLELD-PTNLEALMALAVSYTNEGLQNQ 371 (579)
T ss_pred HHHhcCCchHHHHHHHHHHhhChH-HHHHHHHhhhHhhhccchHHHHHHHHHHHhcC-CccHHHHHHHHHHHhhhhhHHH
Confidence 356778888888888888777544 66777777777777777788888888887765 5567777777778888888888
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHH-----------HHhcCChhHHHHHHHHHH-HcCCCCCHhhHHHHHHHHHHcCCH
Q 004470 555 AHELLRDMLDKGLQPSVVTFNVLMNG-----------FCMSGMIEDGEKLLKWML-EKGLKPNAATYNPLIKQHCLRNDM 622 (751)
Q Consensus 555 A~~~~~~~~~~~~~p~~~~~~~li~~-----------~~~~g~~~~A~~l~~~~~-~~g~~p~~~~~~~l~~~~~~~g~~ 622 (751)
|.+.++..+....+ |..+... +.....+....++|-++. +.+..+|..+...|.-.|...|++
T Consensus 372 Al~~L~~Wi~~~p~-----y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~ef 446 (579)
T KOG1125|consen 372 ALKMLDKWIRNKPK-----YVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEF 446 (579)
T ss_pred HHHHHHHHHHhCcc-----chhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHH
Confidence 88888877765321 1111110 000011122222222222 223234444444555455555555
Q ss_pred HHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 004470 623 RTTAKIYKGMCAQGITP-DGNTYNILLQGHCKARNMKEAWFLHKEMVQKGFNLTTSSYNALIKGFLKRKKYLEARELFEE 701 (751)
Q Consensus 623 ~~A~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 701 (751)
++|.+.|+.++.. .| |...||.|...+....+.++|+..|.++++..+. =+.+...|+-.|...|.|+||.+.|-.
T Consensus 447 draiDcf~~AL~v--~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~-yVR~RyNlgIS~mNlG~ykEA~~hlL~ 523 (579)
T KOG1125|consen 447 DRAVDCFEAALQV--KPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPG-YVRVRYNLGISCMNLGAYKEAVKHLLE 523 (579)
T ss_pred HHHHHHHHHHHhc--CCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCC-eeeeehhhhhhhhhhhhHHHHHHHHHH
Confidence 5555555555542 23 3334555555555555555555555555543211 112333444444555555555555444
Q ss_pred HH
Q 004470 702 MR 703 (751)
Q Consensus 702 ~~ 703 (751)
++
T Consensus 524 AL 525 (579)
T KOG1125|consen 524 AL 525 (579)
T ss_pred HH
Confidence 44
No 109
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.78 E-value=1.7e-07 Score=93.47 Aligned_cols=250 Identities=14% Similarity=0.113 Sum_probs=162.5
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHH
Q 004470 476 LCKSGELETANELLHEMCRKGLQLNIYTYNSIVNGLCKAGNILQAVKLMEDMEVAGFHPDTFTYTTIMDAYCKSGEMVKA 555 (751)
Q Consensus 476 ~~~~g~~~~A~~l~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 555 (751)
+.-.|++..++.-.+ ........+......+.+++...|+.+.++ .++.... .|.......+...+...++-+.+
T Consensus 11 ~fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl---~ei~~~~-~~~l~av~~la~y~~~~~~~e~~ 85 (290)
T PF04733_consen 11 QFYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSVL---SEIKKSS-SPELQAVRLLAEYLSSPSDKESA 85 (290)
T ss_dssp HHCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHH---HHS-TTS-SCCCHHHHHHHHHHCTSTTHHCH
T ss_pred HHHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHHH---HHhccCC-ChhHHHHHHHHHHHhCccchHHH
Confidence 344577777775554 222222223344556677888888877544 3333333 56666665555554444556666
Q ss_pred HHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 004470 556 HELLRDMLDKGLQP-SVVTFNVLMNGFCMSGMIEDGEKLLKWMLEKGLKPNAATYNPLIKQHCLRNDMRTTAKIYKGMCA 634 (751)
Q Consensus 556 ~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 634 (751)
..-+++.......+ +..........+...|++++|++++... .+.......+..|.+.++++.|.+.++.|.+
T Consensus 86 l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~ 159 (290)
T PF04733_consen 86 LEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNMQQ 159 (290)
T ss_dssp HHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHC
T ss_pred HHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 66665554433332 3333333334566789999999988643 3566677788999999999999999999987
Q ss_pred CCCCCCHHHHHHHHHHHH--hc--CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 004470 635 QGITPDGNTYNILLQGHC--KA--RNMKEAWFLHKEMVQKGFNLTTSSYNALIKGFLKRKKYLEARELFEEMRRGGLVAD 710 (751)
Q Consensus 635 ~g~~p~~~~~~~li~~~~--~~--g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 710 (751)
. ..|.. ...+..++. .. +++.+|..+|+++.+. +.+++.+.+.++.+....|++++|.++++++++.+ +.|
T Consensus 160 ~--~eD~~-l~qLa~awv~l~~g~e~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~-~~~ 234 (290)
T PF04733_consen 160 I--DEDSI-LTQLAEAWVNLATGGEKYQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKD-PND 234 (290)
T ss_dssp C--SCCHH-HHHHHHHHHHHHHTTTCCCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC--CCH
T ss_pred c--CCcHH-HHHHHHHHHHHHhCchhHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhc-cCC
Confidence 4 34433 334444433 23 3699999999998765 56689999999999999999999999999998765 557
Q ss_pred HHHHHHHHHHHHhcCCh-hHHHHHHHHHHHcC
Q 004470 711 REIYYFFVDINFEEGNT-EITLELCDAAIECY 741 (751)
Q Consensus 711 ~~~~~~l~~~~~~~g~~-~~A~~~~~~~~~~~ 741 (751)
+.+...++-+....|+. +.+.+++.++....
T Consensus 235 ~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~~ 266 (290)
T PF04733_consen 235 PDTLANLIVCSLHLGKPTEAAERYLSQLKQSN 266 (290)
T ss_dssp HHHHHHHHHHHHHTT-TCHHHHHHHHHCHHHT
T ss_pred HHHHHHHHHHHHHhCCChhHHHHHHHHHHHhC
Confidence 78888888888888887 66777887766543
No 110
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.76 E-value=0.00042 Score=71.29 Aligned_cols=428 Identities=12% Similarity=0.051 Sum_probs=237.5
Q ss_pred hhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcc
Q 004470 248 PELGICWNTASYNIMIHCLCRFGKIKEAHLLLLQMELRGCSPDVVSFSTIINGYCYLGELQRVLKLIEEMQIKGLKPNPY 327 (751)
Q Consensus 248 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 327 (751)
++.+|- |..+|+.||+-+..+ .++++.+.++++... ++-....|..-|.+-.+..+++...++|.+...+-+ +..
T Consensus 13 ie~nP~-di~sw~~lire~qt~-~~~~~R~~YEq~~~~-FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkvL--nlD 87 (656)
T KOG1914|consen 13 IEENPY-DIDSWSQLIREAQTQ-PIDKVRETYEQLVNV-FPSSPRAWKLYIERELASKDFESVEKLFSRCLVKVL--NLD 87 (656)
T ss_pred HhcCCc-cHHHHHHHHHHHccC-CHHHHHHHHHHHhcc-CCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHh--hHh
Confidence 344443 889999999877666 999999999998764 334567888999999999999999999999877633 555
Q ss_pred cHHHHHHHHHh-cCCHHH----HHHHHHHH-HHCCCCC-CHHHHHHHHHH---------HHHcCCHHHHHHHHHHHHhCC
Q 004470 328 TYNSVVRLLCK-TSKVVE----AETILREM-MNQGIVP-DNVIYTTLIDG---------FCKMGNVAAAYRLFDEMRGLN 391 (751)
Q Consensus 328 ~~~~li~~~~~-~g~~~~----A~~~~~~m-~~~g~~p-~~~~~~~li~~---------~~~~g~~~~A~~~~~~m~~~~ 391 (751)
.|...+..-.+ .|+... ..+.|+-. .+.|+.+ +...|+..+.- |..+.+++...++|.++...-
T Consensus 88 LW~lYl~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~tP 167 (656)
T KOG1914|consen 88 LWKLYLSYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALVTP 167 (656)
T ss_pred HHHHHHHHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhcCc
Confidence 56655544332 233222 22233332 2334332 22344444432 233345555666666665431
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHh--CCCCCC----
Q 004470 392 IIPDLLTYTAIICGFCLTGKMVEAEKLFHEMLGRGLEPDEIVYTALIDGYCKAGGMKKAFSLHNNMVH--MRLTPN---- 465 (751)
Q Consensus 392 ~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~---- 465 (751)
+..=...|+-.. . +++.+ |..|-.-++. -+...+..|.++++++.. .|+..+
T Consensus 168 m~nlEkLW~DY~----~---fE~~I-------------N~~tarK~i~--e~s~~Ym~AR~~~qel~~lt~GL~r~~~~v 225 (656)
T KOG1914|consen 168 MHNLEKLWKDYE----A---FEQEI-------------NIITARKFIG--ERSPEYMNARRVYQELQNLTRGLNRNAPAV 225 (656)
T ss_pred cccHHHHHHHHH----H---HHHHH-------------HHHHHHHHHH--hhCHHHHHHHHHHHHHHHHHhhhcccCCCC
Confidence 110011111111 0 11111 1111111110 011223334444444321 111100
Q ss_pred -----------HHHHHHHHHHHHhcCCH--------HHHHHHHHHH-HHcCCCCCHHHH-HH----HHHHHHHcCC----
Q 004470 466 -----------VVTYTALADGLCKSGEL--------ETANELLHEM-CRKGLQLNIYTY-NS----IVNGLCKAGN---- 516 (751)
Q Consensus 466 -----------~~~~~~li~~~~~~g~~--------~~A~~l~~~m-~~~g~~~~~~~~-~~----li~~~~~~g~---- 516 (751)
+..|..+|..--..+-- ....-.+++. .--+..|+.... .. .-+.+...|+
T Consensus 226 p~~~T~~e~~qv~~W~n~I~wEksNpL~t~~~~~~~~Rv~yayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a 305 (656)
T KOG1914|consen 226 PPKGTKDEIQQVELWKNWIKWEKSNPLRTLDGTMLTRRVMYAYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDA 305 (656)
T ss_pred CCCCChHHHHHHHHHHHHHHHHhcCCcccccccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccc
Confidence 01122222211111100 0011111111 111222222210 11 1112233333
Q ss_pred ---HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc---CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHH
Q 004470 517 ---ILQAVKLMEDMEVAGFHPDTFTYTTIMDAYCKS---GEMVKAHELLRDMLDKGLQPSVVTFNVLMNGFCMSGMIEDG 590 (751)
Q Consensus 517 ---~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~---g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A 590 (751)
.+++..+++.....-...+..+|..+.+.--.. ...+...+.++++...-...-..+|..+++.-.+..-++.|
T Consensus 306 ~~~t~e~~~~yEr~I~~l~~~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaa 385 (656)
T KOG1914|consen 306 KSLTDEAASIYERAIEGLLKENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAA 385 (656)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHH
Confidence 345555665554432233444444443322111 13556666777766432222345688888888888889999
Q ss_pred HHHHHHHHHcCCCC-CHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004470 591 EKLLKWMLEKGLKP-NAATYNPLIKQHCLRNDMRTTAKIYKGMCAQGITPDGNTYNILLQGHCKARNMKEAWFLHKEMVQ 669 (751)
Q Consensus 591 ~~l~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 669 (751)
..+|.++.+.+..+ ++.++++++..|| .++.+-|.++|+--++. ...++......++-+...|+-..|..+|++.+.
T Consensus 386 R~iF~kaR~~~r~~hhVfVa~A~mEy~c-skD~~~AfrIFeLGLkk-f~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~ 463 (656)
T KOG1914|consen 386 RKIFKKAREDKRTRHHVFVAAALMEYYC-SKDKETAFRIFELGLKK-FGDSPEYVLKYLDFLSHLNDDNNARALFERVLT 463 (656)
T ss_pred HHHHHHHhhccCCcchhhHHHHHHHHHh-cCChhHHHHHHHHHHHh-cCCChHHHHHHHHHHHHhCcchhHHHHHHHHHh
Confidence 99999999987777 7778888888775 67889999999966553 233455556678888899999999999999998
Q ss_pred CCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004470 670 KGFNLT--TSSYNALIKGFLKRKKYLEARELFEEMRR 704 (751)
Q Consensus 670 ~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 704 (751)
.++.++ ..+|..++.--..-|+...++++-+++..
T Consensus 464 s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~ 500 (656)
T KOG1914|consen 464 SVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFT 500 (656)
T ss_pred ccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 866555 46899999999999999999999888765
No 111
>PLN02789 farnesyltranstransferase
Probab=98.74 E-value=1e-05 Score=81.80 Aligned_cols=217 Identities=8% Similarity=-0.012 Sum_probs=104.3
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCh--hHHH
Q 004470 515 GNILQAVKLMEDMEVAGFHPDTFTYTTIMDAYCKSG-EMVKAHELLRDMLDKGLQPSVVTFNVLMNGFCMSGMI--EDGE 591 (751)
Q Consensus 515 g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~--~~A~ 591 (751)
++.++|+.+.+++++.. +-+..+|+.-...+.+.| ++++++..++++.+.+ +.+..+|+.....+.+.|+. +++.
T Consensus 51 e~serAL~lt~~aI~ln-P~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~n-pknyqaW~~R~~~l~~l~~~~~~~el 128 (320)
T PLN02789 51 ERSPRALDLTADVIRLN-PGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDN-PKNYQIWHHRRWLAEKLGPDAANKEL 128 (320)
T ss_pred CCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHC-CcchHHhHHHHHHHHHcCchhhHHHH
Confidence 34444444444444432 222333333333333444 3455555555554432 22333444333333333331 3445
Q ss_pred HHHHHHHHcCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc---CC----HHHHHHHH
Q 004470 592 KLLKWMLEKGLKPNAATYNPLIKQHCLRNDMRTTAKIYKGMCAQGITPDGNTYNILLQGHCKA---RN----MKEAWFLH 664 (751)
Q Consensus 592 ~l~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~---g~----~~~A~~~~ 664 (751)
.+++++++...+ +..+|+.....+...|+++++++.++++++.+. -|...|+.....+.+. |. .++++...
T Consensus 129 ~~~~kal~~dpk-Ny~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~-~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~ 206 (320)
T PLN02789 129 EFTRKILSLDAK-NYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDV-RNNSAWNQRYFVITRSPLLGGLEAMRDSELKYT 206 (320)
T ss_pred HHHHHHHHhCcc-cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCC-CchhHHHHHHHHHHhccccccccccHHHHHHHH
Confidence 555555544222 444555555555555555555555555555432 2334444443333332 11 23455556
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHhc----CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC---------------
Q 004470 665 KEMVQKGFNLTTSSYNALIKGFLKR----KKYLEARELFEEMRRGGLVADREIYYFFVDINFEEG--------------- 725 (751)
Q Consensus 665 ~~~~~~~~~p~~~~~~~l~~~~~~~----g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--------------- 725 (751)
.+++...+. |...|+.+...+... ++..+|.+.+.+..+.+ +.+......|++.|++..
T Consensus 207 ~~aI~~~P~-N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~-~~s~~al~~l~d~~~~~~~~~~~~~~~~~~~~~ 284 (320)
T PLN02789 207 IDAILANPR-NESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKD-SNHVFALSDLLDLLCEGLQPTAEFRDTVDTLAE 284 (320)
T ss_pred HHHHHhCCC-CcCHHHHHHHHHhcCCcccccchhHHHHHHHhhccc-CCcHHHHHHHHHHHHhhhccchhhhhhhhcccc
Confidence 566665544 566666666666552 33455666666655533 334555556666665432
Q ss_pred ---ChhHHHHHHHHH
Q 004470 726 ---NTEITLELCDAA 737 (751)
Q Consensus 726 ---~~~~A~~~~~~~ 737 (751)
..++|.++++.+
T Consensus 285 ~~~~~~~a~~~~~~l 299 (320)
T PLN02789 285 ELSDSTLAQAVCSEL 299 (320)
T ss_pred ccccHHHHHHHHHHH
Confidence 346777777776
No 112
>PLN02789 farnesyltranstransferase
Probab=98.73 E-value=7.4e-06 Score=82.84 Aligned_cols=215 Identities=10% Similarity=0.024 Sum_probs=136.4
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhCCCccCHHhHHHHHHHHHhCCC-CHHHHHHHHHhchhcCCCcCHHHHHHHHHH
Q 004470 187 VFDIFFQVLVEARKLNEARKLFEKLLNYGLVISVDSCNLFLSRLSNTCD-GLRMVVKSFTEFPELGICWNTASYNIMIHC 265 (751)
Q Consensus 187 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~l~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 265 (751)
+++.+-.++...++.++|+.++.++++. .|+..+.=..-+.+....| .+++++..++++.+..+. +..+|+.....
T Consensus 39 a~~~~ra~l~~~e~serAL~lt~~aI~l--nP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npk-nyqaW~~R~~~ 115 (320)
T PLN02789 39 AMDYFRAVYASDERSPRALDLTADVIRL--NPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPK-NYQIWHHRRWL 115 (320)
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHH--CchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCc-chHHhHHHHHH
Confidence 3344444556667788888888888876 5666544333333333445 567888888888877665 66667766555
Q ss_pred HHhcCCH--HHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhc---C
Q 004470 266 LCRFGKI--KEAHLLLLQMELRGCSPDVVSFSTIINGYCYLGELQRVLKLIEEMQIKGLKPNPYTYNSVVRLLCKT---S 340 (751)
Q Consensus 266 ~~~~g~~--~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~---g 340 (751)
+.+.|+. ++++.+++++.+... -|..+|+.....+...|+++++++.++++.+.+.. |..+|+.....+.+. |
T Consensus 116 l~~l~~~~~~~el~~~~kal~~dp-kNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~-N~sAW~~R~~vl~~~~~l~ 193 (320)
T PLN02789 116 AEKLGPDAANKELEFTRKILSLDA-KNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVR-NNSAWNQRYFVITRSPLLG 193 (320)
T ss_pred HHHcCchhhHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCC-chhHHHHHHHHHHhccccc
Confidence 5566653 667778877776553 46777887777777888888888888888877544 566666655555443 2
Q ss_pred CH----HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc----CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 004470 341 KV----VEAETILREMMNQGIVPDNVIYTTLIDGFCKM----GNVAAAYRLFDEMRGLNIIPDLLTYTAIICGFCL 408 (751)
Q Consensus 341 ~~----~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~----g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~ 408 (751)
+. +++.+...+++... +-|..+|+.+...+... ++..+|.+.+.+....++. +......|+..|+.
T Consensus 194 ~~~~~~e~el~y~~~aI~~~-P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~-s~~al~~l~d~~~~ 267 (320)
T PLN02789 194 GLEAMRDSELKYTIDAILAN-PRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSN-HVFALSDLLDLLCE 267 (320)
T ss_pred cccccHHHHHHHHHHHHHhC-CCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCC-cHHHHHHHHHHHHh
Confidence 22 34555555555543 44666777777766652 3345566666666554432 55566666666664
No 113
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.70 E-value=0.00018 Score=81.11 Aligned_cols=223 Identities=8% Similarity=0.045 Sum_probs=129.6
Q ss_pred CCCChhHHHHHHHHHHhcCChHHHHHHHHHHHcCCCCCchhhhHHHHHHHHHhhhcCCCChhhHHHHHHHHHhcCChhHH
Q 004470 125 REPILEARCIVVQISVAAKDLKTAHGLIHDFWAKPNLDASIAFTHFVERLIYTYKDWGSDPHVFDIFFQVLVEARKLNEA 204 (751)
Q Consensus 125 ~~~~~~~~~~~~~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 204 (751)
.+.+..++..++..+...+++++|..+++..+... |..+..|..++..+.+.+++++|
T Consensus 27 ~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~----------------------P~~i~~yy~~G~l~~q~~~~~~~ 84 (906)
T PRK14720 27 SLSKFKELDDLIDAYKSENLTDEAKDICEEHLKEH----------------------KKSISALYISGILSLSRRPLNDS 84 (906)
T ss_pred CcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC----------------------CcceehHHHHHHHHHhhcchhhh
Confidence 46677888888888878888888888888776654 56666777777777777777777
Q ss_pred HHHHHHHHhCCCccCHHhHHHHHHHHHhCCCCHHHHHHHHHhchhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 004470 205 RKLFEKLLNYGLVISVDSCNLFLSRLSNTCDGLRMVVKSFTEFPELGICWNTASYNIMIHCLCRFGKIKEAHLLLLQMEL 284 (751)
Q Consensus 205 ~~~~~~~~~~g~~p~~~~~~~ll~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 284 (751)
..+ .+... .+. ..++..+..++..+.+. ..+..++-.|+.+|-+.|+.++|..+++++.+
T Consensus 85 ~lv--~~l~~--~~~--------------~~~~~~ve~~~~~i~~~--~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~ 144 (906)
T PRK14720 85 NLL--NLIDS--FSQ--------------NLKWAIVEHICDKILLY--GENKLALRTLAEAYAKLNENKKLKGVWERLVK 144 (906)
T ss_pred hhh--hhhhh--ccc--------------ccchhHHHHHHHHHHhh--hhhhHHHHHHHHHHHHcCChHHHHHHHHHHHh
Confidence 666 33322 111 12222222222333332 12444556666666666666666666666666
Q ss_pred cCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHHC---------
Q 004470 285 RGCSPDVVSFSTIINGYCYLGELQRVLKLIEEMQIKGLKPNPYTYNSVVRLLCKTSKVVEAETILREMMNQ--------- 355 (751)
Q Consensus 285 ~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--------- 355 (751)
.. +-|....|.+...|... ++++|.+++.+.... +....++.++.+++.++...
T Consensus 145 ~D-~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~---------------~i~~kq~~~~~e~W~k~~~~~~~d~d~f~ 207 (906)
T PRK14720 145 AD-RDNPEIVKKLATSYEEE-DKEKAITYLKKAIYR---------------FIKKKQYVGIEEIWSKLVHYNSDDFDFFL 207 (906)
T ss_pred cC-cccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHH---------------HHhhhcchHHHHHHHHHHhcCcccchHHH
Confidence 55 24566666666666666 666666666665443 22233334444444444333
Q ss_pred ----------CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 004470 356 ----------GIVPDNVIYTTLIDGFCKMGNVAAAYRLFDEMRGLNIIPDLLTYTAIICGFC 407 (751)
Q Consensus 356 ----------g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~ 407 (751)
|..--+.++-.+-..|-+.++++++..+++.+.+.... |.....-++.+|.
T Consensus 208 ~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~-n~~a~~~l~~~y~ 268 (906)
T PRK14720 208 RIERKVLGHREFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHDNK-NNKAREELIRFYK 268 (906)
T ss_pred HHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCc-chhhHHHHHHHHH
Confidence 22222334444556666677777777777777766544 5555666665554
No 114
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.69 E-value=1.1e-06 Score=97.87 Aligned_cols=163 Identities=10% Similarity=-0.031 Sum_probs=137.7
Q ss_pred ChHHHHHHHHhhhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHcCCCCCchhhhHHHHHHHHHhhhcCCCChhhHH
Q 004470 110 DYRLVLDFFDWACLRREPILEARCIVVQISVAAKDLKTAHGLIHDFWAKPNLDASIAFTHFVERLIYTYKDWGSDPHVFD 189 (751)
Q Consensus 110 ~~~~al~~f~~~~~~~~~~~~~~~~~~~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 189 (751)
.|..+|.-..-...+.+++.+++..++.+....|++++|..+++.++... |.+..++.
T Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~----------------------Pd~~~a~~ 124 (694)
T PRK15179 67 KPAAALPELLDYVRRYPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRF----------------------PDSSEAFI 124 (694)
T ss_pred chHhhHHHHHHHHHhccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC----------------------CCcHHHHH
Confidence 45555544443444567779999999999999999999999999998765 77788899
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhCCCccCHHhHHHHHHHHHhCCCCHHHHHHHHHhchhcCCCcCHHHHHHHHHHHHhc
Q 004470 190 IFFQVLVEARKLNEARKLFEKLLNYGLVISVDSCNLFLSRLSNTCDGLRMVVKSFTEFPELGICWNTASYNIMIHCLCRF 269 (751)
Q Consensus 190 ~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 269 (751)
.++.++.+.+++++|+..+++.+.. .|+.......++.++.+.|++++|..+|+++...++. +..++..+...+.+.
T Consensus 125 ~~a~~L~~~~~~eeA~~~~~~~l~~--~p~~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~~p~-~~~~~~~~a~~l~~~ 201 (694)
T PRK15179 125 LMLRGVKRQQGIEAGRAEIELYFSG--GSSSAREILLEAKSWDEIGQSEQADACFERLSRQHPE-FENGYVGWAQSLTRR 201 (694)
T ss_pred HHHHHHHHhccHHHHHHHHHHHhhc--CCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHc
Confidence 9999999999999999999999988 7999988888888888899999999999999986543 688999999999999
Q ss_pred CCHHHHHHHHHHHHhcCCCCCHHHHHHHH
Q 004470 270 GKIKEAHLLLLQMELRGCSPDVVSFSTII 298 (751)
Q Consensus 270 g~~~~A~~~~~~m~~~g~~p~~~~~~~li 298 (751)
|+.++|...|++..+.- .|.+..|+.++
T Consensus 202 G~~~~A~~~~~~a~~~~-~~~~~~~~~~~ 229 (694)
T PRK15179 202 GALWRARDVLQAGLDAI-GDGARKLTRRL 229 (694)
T ss_pred CCHHHHHHHHHHHHHhh-CcchHHHHHHH
Confidence 99999999999987642 25556665544
No 115
>PF12854 PPR_1: PPR repeat
Probab=98.65 E-value=3.5e-08 Score=62.32 Aligned_cols=32 Identities=31% Similarity=0.557 Sum_probs=16.8
Q ss_pred CCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 004470 251 GICWNTASYNIMIHCLCRFGKIKEAHLLLLQM 282 (751)
Q Consensus 251 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 282 (751)
|+.||+++||+||++||+.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 44455555555555555555555555555544
No 116
>PF12854 PPR_1: PPR repeat
Probab=98.65 E-value=3.8e-08 Score=62.17 Aligned_cols=32 Identities=47% Similarity=1.124 Sum_probs=23.2
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 004470 286 GCSPDVVSFSTIINGYCYLGELQRVLKLIEEM 317 (751)
Q Consensus 286 g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 317 (751)
|+.||..|||+||.+||+.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 56677777777777777777777777777766
No 117
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.63 E-value=3.8e-06 Score=82.51 Aligned_cols=186 Identities=8% Similarity=-0.054 Sum_probs=116.8
Q ss_pred CChhHHHHHHHHHHhcCChHHHHHHHHHHHcCCCCCchhhhHHHHHHHHHhhhcCCCCh---hhHHHHHHHHHhcCChhH
Q 004470 127 PILEARCIVVQISVAAKDLKTAHGLIHDFWAKPNLDASIAFTHFVERLIYTYKDWGSDP---HVFDIFFQVLVEARKLNE 203 (751)
Q Consensus 127 ~~~~~~~~~~~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~ 203 (751)
.....+...+..+...|++++|...+++++... |.++ .++..++.+|.+.|++++
T Consensus 31 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~----------------------p~~~~~~~a~~~la~~~~~~~~~~~ 88 (235)
T TIGR03302 31 WPAEELYEEAKEALDSGDYTEAIKYFEALESRY----------------------PFSPYAEQAQLDLAYAYYKSGDYAE 88 (235)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC----------------------CCchhHHHHHHHHHHHHHhcCCHHH
Confidence 356677788888888889999988888877654 2222 466778888889999999
Q ss_pred HHHHHHHHHhCCCccCHHh---HHHHHHHHHhCC--------CCHHHHHHHHHhchhcCCCcCHHHHHHHHHHHHhcCCH
Q 004470 204 ARKLFEKLLNYGLVISVDS---CNLFLSRLSNTC--------DGLRMVVKSFTEFPELGICWNTASYNIMIHCLCRFGKI 272 (751)
Q Consensus 204 A~~~~~~~~~~g~~p~~~~---~~~ll~~l~~~~--------~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 272 (751)
|...|+++++. .|+... ....++...... |+.++|.+.|+++....+. +...+..+.... ..
T Consensus 89 A~~~~~~~l~~--~p~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~a~~~~~----~~ 161 (235)
T TIGR03302 89 AIAAADRFIRL--HPNHPDADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPN-SEYAPDAKKRMD----YL 161 (235)
T ss_pred HHHHHHHHHHH--CcCCCchHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCC-ChhHHHHHHHHH----HH
Confidence 99999988876 333221 122233332222 6677888888888776544 333332221110 00
Q ss_pred HHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC--CCCcccHHHHHHHHHhcCCHHHHHHHHH
Q 004470 273 KEAHLLLLQMELRGCSPDVVSFSTIINGYCYLGELQRVLKLIEEMQIKGL--KPNPYTYNSVVRLLCKTSKVVEAETILR 350 (751)
Q Consensus 273 ~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~--~p~~~~~~~li~~~~~~g~~~~A~~~~~ 350 (751)
.. ... .....+...+.+.|++++|+..+++..+... +.....+..+...+.+.|++++|...++
T Consensus 162 ~~------~~~--------~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~ 227 (235)
T TIGR03302 162 RN------RLA--------GKELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAA 227 (235)
T ss_pred HH------HHH--------HHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 00 000 0112455567778888888888888776521 1224567778888888888888888877
Q ss_pred HHHHC
Q 004470 351 EMMNQ 355 (751)
Q Consensus 351 ~m~~~ 355 (751)
.+...
T Consensus 228 ~l~~~ 232 (235)
T TIGR03302 228 VLGAN 232 (235)
T ss_pred HHHhh
Confidence 77664
No 118
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.62 E-value=7.2e-06 Score=77.18 Aligned_cols=156 Identities=13% Similarity=0.103 Sum_probs=114.3
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHHcCCH
Q 004470 543 MDAYCKSGEMVKAHELLRDMLDKGLQPSVVTFNVLMNGFCMSGMIEDGEKLLKWMLEKGLKPNAATYNPLIKQHCLRNDM 622 (751)
Q Consensus 543 i~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~g~~p~~~~~~~l~~~~~~~g~~ 622 (751)
+..|...|+++......+.+... . ..+...++.+++...++..++.. +.|...|..+...|...|++
T Consensus 23 ~~~Y~~~g~~~~v~~~~~~~~~~----~--------~~~~~~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~ 89 (198)
T PRK10370 23 VGSYLLSPKWQAVRAEYQRLADP----L--------HQFASQQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDY 89 (198)
T ss_pred HHHHHHcchHHHHHHHHHHHhCc----c--------ccccCchhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCH
Confidence 45678889888875554333211 0 01223567778888888777764 34777888888888899999
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHH-HhcCC--HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 004470 623 RTTAKIYKGMCAQGITPDGNTYNILLQGH-CKARN--MKEAWFLHKEMVQKGFNLTTSSYNALIKGFLKRKKYLEARELF 699 (751)
Q Consensus 623 ~~A~~~~~~m~~~g~~p~~~~~~~li~~~-~~~g~--~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 699 (751)
++|...|++..+.. +.+...+..+..++ ...|+ .++|.++++++++.++. +...+..++..+.+.|++++|+..|
T Consensus 90 ~~A~~a~~~Al~l~-P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~-~~~al~~LA~~~~~~g~~~~Ai~~~ 167 (198)
T PRK10370 90 DNALLAYRQALQLR-GENAELYAALATVLYYQAGQHMTPQTREMIDKALALDAN-EVTALMLLASDAFMQADYAQAIELW 167 (198)
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCC-ChhHHHHHHHHHHHcCCHHHHHHHH
Confidence 99999999888854 23677777777764 56676 58999999999988766 7788888888999999999999999
Q ss_pred HHHHHCCCCCCHHHH
Q 004470 700 EEMRRGGLVADREIY 714 (751)
Q Consensus 700 ~~~~~~~~~~~~~~~ 714 (751)
+++++.. +|+..-+
T Consensus 168 ~~aL~l~-~~~~~r~ 181 (198)
T PRK10370 168 QKVLDLN-SPRVNRT 181 (198)
T ss_pred HHHHhhC-CCCccHH
Confidence 9998864 5555443
No 119
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.61 E-value=2.9e-06 Score=89.75 Aligned_cols=219 Identities=15% Similarity=0.123 Sum_probs=136.5
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 004470 464 PNVVTYTALADGLCKSGELETANELLHEMCRKGLQLNIYTYNSIVNGLCKAGNILQAVKLMEDMEVAGFHPDTFTYTTIM 543 (751)
Q Consensus 464 ~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li 543 (751)
|--..-..+...+.+.|-...|..+++++ ..|...|.+|+..|+..+|..+..+..++ +||...|..++
T Consensus 396 p~Wq~q~~laell~slGitksAl~I~Erl---------emw~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc~LG 464 (777)
T KOG1128|consen 396 PIWQLQRLLAELLLSLGITKSALVIFERL---------EMWDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLYCLLG 464 (777)
T ss_pred CcchHHHHHHHHHHHcchHHHHHHHHHhH---------HHHHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhHHHhh
Confidence 33334445566666677777777666553 35666677777777777777777666663 57777777766
Q ss_pred HHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHHcCCHH
Q 004470 544 DAYCKSGEMVKAHELLRDMLDKGLQPSVVTFNVLMNGFCMSGMIEDGEKLLKWMLEKGLKPNAATYNPLIKQHCLRNDMR 623 (751)
Q Consensus 544 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~ 623 (751)
+......-+++|.++.+..... +-..+.....+.++++++.+.|+.-.+.. .....+|-.+..+..+.++++
T Consensus 465 Dv~~d~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~n-plq~~~wf~~G~~ALqlek~q 536 (777)
T KOG1128|consen 465 DVLHDPSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEIN-PLQLGTWFGLGCAALQLEKEQ 536 (777)
T ss_pred hhccChHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcC-ccchhHHHhccHHHHHHhhhH
Confidence 6666666666666666654322 11222222234567777777776666542 223455666666666677777
Q ss_pred HHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 004470 624 TTAKIYKGMCAQGITPD-GNTYNILLQGHCKARNMKEAWFLHKEMVQKGFNLTTSSYNALIKGFLKRKKYLEARELFEEM 702 (751)
Q Consensus 624 ~A~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 702 (751)
.|.+.|...... .|| ...||.+-.+|.+.|+-.+|...+.++.+.+.. +...|....-...+.|.+++|.+.+.++
T Consensus 537 ~av~aF~rcvtL--~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~-~w~iWENymlvsvdvge~eda~~A~~rl 613 (777)
T KOG1128|consen 537 AAVKAFHRCVTL--EPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQ-HWQIWENYMLVSVDVGEFEDAIKAYHRL 613 (777)
T ss_pred HHHHHHHHHhhc--CCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCC-CCeeeechhhhhhhcccHHHHHHHHHHH
Confidence 777777766652 443 555777777777777777777777777766533 5556666666666777777777777776
Q ss_pred HH
Q 004470 703 RR 704 (751)
Q Consensus 703 ~~ 704 (751)
.+
T Consensus 614 l~ 615 (777)
T KOG1128|consen 614 LD 615 (777)
T ss_pred HH
Confidence 65
No 120
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.60 E-value=8.2e-06 Score=80.09 Aligned_cols=188 Identities=12% Similarity=0.068 Sum_probs=127.5
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCH---HHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCH--h
Q 004470 533 HPDTFTYTTIMDAYCKSGEMVKAHELLRDMLDKGLQPSV---VTFNVLMNGFCMSGMIEDGEKLLKWMLEKGLKPNA--A 607 (751)
Q Consensus 533 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~---~~~~~li~~~~~~g~~~~A~~l~~~~~~~g~~p~~--~ 607 (751)
......+..++..+...|++++|...|+++.... +.+. .++..+..++...|++++|...++++.+....... .
T Consensus 30 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~ 108 (235)
T TIGR03302 30 EWPAEELYEEAKEALDSGDYTEAIKYFEALESRY-PFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADY 108 (235)
T ss_pred cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHH
Confidence 3456677788888889999999999999888753 2222 46677788888899999999999999876322111 1
Q ss_pred hHHHHHHHHHHc--------CCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH
Q 004470 608 TYNPLIKQHCLR--------NDMRTTAKIYKGMCAQGITPDG-NTYNILLQGHCKARNMKEAWFLHKEMVQKGFNLTTSS 678 (751)
Q Consensus 608 ~~~~l~~~~~~~--------g~~~~A~~~~~~m~~~g~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~ 678 (751)
++..+..++... |+.++|.+.++++.+. .|+. ..+..+.... ..... . ...
T Consensus 109 a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~a~~~~~----~~~~~-------~-------~~~ 168 (235)
T TIGR03302 109 AYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR--YPNSEYAPDAKKRMD----YLRNR-------L-------AGK 168 (235)
T ss_pred HHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH--CCCChhHHHHHHHHH----HHHHH-------H-------HHH
Confidence 344455555544 6778888888888774 3432 2222221110 00000 0 011
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCC--CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcC
Q 004470 679 YNALIKGFLKRKKYLEARELFEEMRRGG--LVADREIYYFFVDINFEEGNTEITLELCDAAIECY 741 (751)
Q Consensus 679 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 741 (751)
...+...+.+.|++++|+..++++++.. -+.....+..++.++.+.|++++|.+.++.+....
T Consensus 169 ~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~ 233 (235)
T TIGR03302 169 ELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANY 233 (235)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 2356677889999999999999998752 12245788899999999999999999888876654
No 121
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.59 E-value=1.7e-05 Score=74.32 Aligned_cols=157 Identities=10% Similarity=-0.003 Sum_probs=70.9
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHHcC
Q 004470 541 TIMDAYCKSGEMVKAHELLRDMLDKGLQPSVVTFNVLMNGFCMSGMIEDGEKLLKWMLEKGLKPNAATYNPLIKQHCLRN 620 (751)
Q Consensus 541 ~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~g~~p~~~~~~~l~~~~~~~g 620 (751)
.+-..+...|+-+.+..+....... .+.|......++....+.|++.+|...+++.... -++|...|+.+.-+|.+.|
T Consensus 71 ~~a~a~~~~G~a~~~l~~~~~~~~~-~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l-~p~d~~~~~~lgaaldq~G 148 (257)
T COG5010 71 KLATALYLRGDADSSLAVLQKSAIA-YPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARL-APTDWEAWNLLGAALDQLG 148 (257)
T ss_pred HHHHHHHhcccccchHHHHhhhhcc-CcccHHHHHHHHHHHHHhcchHHHHHHHHHHhcc-CCCChhhhhHHHHHHHHcc
Confidence 3334444444444444444443322 1223333444444444555555555555554443 2334455555555555555
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 004470 621 DMRTTAKIYKGMCAQGITPDGNTYNILLQGHCKARNMKEAWFLHKEMVQKGFNLTTSSYNALIKGFLKRKKYLEARELFE 700 (751)
Q Consensus 621 ~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 700 (751)
+.+.|..-|.+..+.. .-++..++.+.-.|.-.|+.+.|..++......+.. |..+-..+.......|++++|..+..
T Consensus 149 r~~~Ar~ay~qAl~L~-~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~a-d~~v~~NLAl~~~~~g~~~~A~~i~~ 226 (257)
T COG5010 149 RFDEARRAYRQALELA-PNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAA-DSRVRQNLALVVGLQGDFREAEDIAV 226 (257)
T ss_pred ChhHHHHHHHHHHHhc-cCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCC-chHHHHHHHHHHhhcCChHHHHhhcc
Confidence 5555555555544421 113334444444444455555555555554443222 34444444444444555555544443
Q ss_pred H
Q 004470 701 E 701 (751)
Q Consensus 701 ~ 701 (751)
.
T Consensus 227 ~ 227 (257)
T COG5010 227 Q 227 (257)
T ss_pred c
Confidence 3
No 122
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.56 E-value=5.1e-05 Score=85.90 Aligned_cols=202 Identities=13% Similarity=0.100 Sum_probs=92.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHC-CCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 004470 502 YTYNSIVNGLCKAGNILQAVKLMEDMEVA-GFHPD---TFTYTTIMDAYCKSGEMVKAHELLRDMLDKGLQPSVVTFNVL 577 (751)
Q Consensus 502 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l 577 (751)
..|-..+......++.++|.++.+++... ++.-. .-.|.++++.-..-|.-+...++|+++.+. ......|..|
T Consensus 1459 i~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqy--cd~~~V~~~L 1536 (1710)
T KOG1070|consen 1459 ILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQY--CDAYTVHLKL 1536 (1710)
T ss_pred hHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHh--cchHHHHHHH
Confidence 34444444444444444444444444321 10000 122333333333334444444445444432 1122334444
Q ss_pred HHHHHhcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHhc
Q 004470 578 MNGFCMSGMIEDGEKLLKWMLEKGLKPNAATYNPLIKQHCLRNDMRTTAKIYKGMCAQGITPD---GNTYNILLQGHCKA 654 (751)
Q Consensus 578 i~~~~~~g~~~~A~~l~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~---~~~~~~li~~~~~~ 654 (751)
...|.+.+..++|.++++.|.++ ..-....|...+..+.++.+-+.|.+++.++++. -|. .....-.+..-.+.
T Consensus 1537 ~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~--lPk~eHv~~IskfAqLEFk~ 1613 (1710)
T KOG1070|consen 1537 LGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKS--LPKQEHVEFISKFAQLEFKY 1613 (1710)
T ss_pred HHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhh--cchhhhHHHHHHHHHHHhhc
Confidence 44555555555555555555443 1123344444455555555555555555554442 222 22223333444455
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 004470 655 RNMKEAWFLHKEMVQKGFNLTTSSYNALIKGFLKRKKYLEARELFEEMRRGGLVA 709 (751)
Q Consensus 655 g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 709 (751)
|+.+.+..+|+..+...++ -...|+.+++.-.++|+.+.++.+|+++...++.|
T Consensus 1614 GDaeRGRtlfEgll~ayPK-RtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~ 1667 (1710)
T KOG1070|consen 1614 GDAERGRTLFEGLLSAYPK-RTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSI 1667 (1710)
T ss_pred CCchhhHHHHHHHHhhCcc-chhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCh
Confidence 5555555566555554333 44555555665556666666666666665555544
No 123
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.55 E-value=4.9e-06 Score=88.10 Aligned_cols=222 Identities=18% Similarity=0.196 Sum_probs=174.5
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 004470 358 VPDNVIYTTLIDGFCKMGNVAAAYRLFDEMRGLNIIPDLLTYTAIICGFCLTGKMVEAEKLFHEMLGRGLEPDEIVYTAL 437 (751)
Q Consensus 358 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l 437 (751)
+|-...-..+...+.+.|-..+|..+|++.. .|..+|.+|+..|+..+|..+..+.+++ +||...|..+
T Consensus 395 pp~Wq~q~~laell~slGitksAl~I~Erle---------mw~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc~L 463 (777)
T KOG1128|consen 395 PPIWQLQRLLAELLLSLGITKSALVIFERLE---------MWDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLYCLL 463 (777)
T ss_pred CCcchHHHHHHHHHHHcchHHHHHHHHHhHH---------HHHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhHHHh
Confidence 3444445567788889999999999998765 4667788999999999999998888874 7888889888
Q ss_pred HHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCH
Q 004470 438 IDGYCKAGGMKKAFSLHNNMVHMRLTPNVVTYTALADGLCKSGELETANELLHEMCRKGLQLNIYTYNSIVNGLCKAGNI 517 (751)
Q Consensus 438 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~~~~li~~~~~~g~~ 517 (751)
++......-+++|.++.+..... +-..+.....+.++++++.+.|+.-.+.+ +....+|..+.-+..+.+++
T Consensus 464 GDv~~d~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~n-plq~~~wf~~G~~ALqlek~ 535 (777)
T KOG1128|consen 464 GDVLHDPSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEIN-PLQLGTWFGLGCAALQLEKE 535 (777)
T ss_pred hhhccChHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcC-ccchhHHHhccHHHHHHhhh
Confidence 88877777788888888775432 22333333455789999999998877764 33667888888888899999
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 004470 518 LQAVKLMEDMEVAGFHPDTFTYTTIMDAYCKSGEMVKAHELLRDMLDKGLQPSVVTFNVLMNGFCMSGMIEDGEKLLKWM 597 (751)
Q Consensus 518 ~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~~ 597 (751)
+.|.+.|....... +.+...||.+-.+|.+.++-.+|...+.+..+.+ ..+...|...+....+.|.+++|.+.+.++
T Consensus 536 q~av~aF~rcvtL~-Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn-~~~w~iWENymlvsvdvge~eda~~A~~rl 613 (777)
T KOG1128|consen 536 QAAVKAFHRCVTLE-PDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN-YQHWQIWENYMLVSVDVGEFEDAIKAYHRL 613 (777)
T ss_pred HHHHHHHHHHhhcC-CCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC-CCCCeeeechhhhhhhcccHHHHHHHHHHH
Confidence 99999999888754 5567889999999999999999999999998876 445666777777778899999999999888
Q ss_pred HHc
Q 004470 598 LEK 600 (751)
Q Consensus 598 ~~~ 600 (751)
...
T Consensus 614 l~~ 616 (777)
T KOG1128|consen 614 LDL 616 (777)
T ss_pred HHh
Confidence 753
No 124
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.54 E-value=5.4e-05 Score=85.72 Aligned_cols=218 Identities=14% Similarity=0.132 Sum_probs=165.2
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-CCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 004470 453 LHNNMVHMRLTPNVVTYTALADGLCKSGELETANELLHEMCRK-GLQL---NIYTYNSIVNGLCKAGNILQAVKLMEDME 528 (751)
Q Consensus 453 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~-g~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 528 (751)
-|++..... +.+...|-..|......++.++|.++.++.... ++.- -...|.++++.-...|.-+...++|+++.
T Consensus 1446 Dferlvrss-PNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAc 1524 (1710)
T KOG1070|consen 1446 DFERLVRSS-PNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERAC 1524 (1710)
T ss_pred HHHHHHhcC-CCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHH
Confidence 344444443 235667888888888999999999999988764 1111 12467777777777788888889999988
Q ss_pred HCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCC-CHh
Q 004470 529 VAGFHPDTFTYTTIMDAYCKSGEMVKAHELLRDMLDKGLQPSVVTFNVLMNGFCMSGMIEDGEKLLKWMLEKGLKP-NAA 607 (751)
Q Consensus 529 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~g~~p-~~~ 607 (751)
+.. .....|..|...|.+.+.+++|.++|+.|.++ +......|...++.+.+.++-+.|..++.++++.-.+- ...
T Consensus 1525 qyc--d~~~V~~~L~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~ 1601 (1710)
T KOG1070|consen 1525 QYC--DAYTVHLKLLGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVE 1601 (1710)
T ss_pred Hhc--chHHHHHHHHHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHH
Confidence 752 33556788889999999999999999999875 34577789999999999999999999999888752221 233
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 004470 608 TYNPLIKQHCLRNDMRTTAKIYKGMCAQGITPDGNTYNILLQGHCKARNMKEAWFLHKEMVQKGFNLT 675 (751)
Q Consensus 608 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~ 675 (751)
.....+..-.+.|+.+.+..+|+..+... +--...|+.+++.-.++|+.+.+..+|++++..++.|-
T Consensus 1602 ~IskfAqLEFk~GDaeRGRtlfEgll~ay-PKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~k 1668 (1710)
T KOG1070|consen 1602 FISKFAQLEFKYGDAERGRTLFEGLLSAY-PKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIK 1668 (1710)
T ss_pred HHHHHHHHHhhcCCchhhHHHHHHHHhhC-ccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChh
Confidence 44555666678999999999999888753 33567788999999999999999999999998877653
No 125
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.53 E-value=9.2e-06 Score=90.54 Aligned_cols=151 Identities=7% Similarity=0.018 Sum_probs=130.2
Q ss_pred hhcCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCccCHHhHHHHHHHHHhCCCCHHHHHHHHHhchhcCCCcCHH
Q 004470 178 YKDWGSDPHVFDIFFQVLVEARKLNEARKLFEKLLNYGLVISVDSCNLFLSRLSNTCDGLRMVVKSFTEFPELGICWNTA 257 (751)
Q Consensus 178 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~ 257 (751)
.++++.++.++..|+.+..+.|++++|..+++.+.+. .|+.......+....++.+++++|+..+++....++. +..
T Consensus 79 ~~~~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~--~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~-~~~ 155 (694)
T PRK15179 79 VRRYPHTELFQVLVARALEAAHRSDEGLAVWRGIHQR--FPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSS-SAR 155 (694)
T ss_pred HHhccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhh--CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCC-CHH
Confidence 3556888999999999999999999999999999987 8999888887777777899999999999999999776 888
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHH
Q 004470 258 SYNIMIHCLCRFGKIKEAHLLLLQMELRGCSPDVVSFSTIINGYCYLGELQRVLKLIEEMQIKGLKPNPYTYNSVV 333 (751)
Q Consensus 258 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li 333 (751)
..+.+..++.+.|++++|..+|++....+. -+..++..+...+.+.|+.++|...|++..+.- .+....|+.++
T Consensus 156 ~~~~~a~~l~~~g~~~~A~~~y~~~~~~~p-~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~-~~~~~~~~~~~ 229 (694)
T PRK15179 156 EILLEAKSWDEIGQSEQADACFERLSRQHP-EFENGYVGWAQSLTRRGALWRARDVLQAGLDAI-GDGARKLTRRL 229 (694)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHhcCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh-CcchHHHHHHH
Confidence 899999999999999999999999997442 347889999999999999999999999998762 33445555443
No 126
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.53 E-value=1.9e-05 Score=74.33 Aligned_cols=120 Identities=11% Similarity=0.060 Sum_probs=74.0
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHH-HHcCC--HHHH
Q 004470 549 SGEMVKAHELLRDMLDKGLQPSVVTFNVLMNGFCMSGMIEDGEKLLKWMLEKGLKPNAATYNPLIKQH-CLRND--MRTT 625 (751)
Q Consensus 549 ~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~g~~p~~~~~~~l~~~~-~~~g~--~~~A 625 (751)
.++.+++...++..++.+ +.+...|..+...|...|++++|...+++..+... .+...+..+..++ ...|+ .++|
T Consensus 52 ~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P-~~~~~~~~lA~aL~~~~g~~~~~~A 129 (198)
T PRK10370 52 QQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRG-ENAELYAALATVLYYQAGQHMTPQT 129 (198)
T ss_pred chhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhcCCCCcHHH
Confidence 455566666666666553 45666667676677777777777777776666532 2455555555543 45555 3677
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 004470 626 AKIYKGMCAQGITPDGNTYNILLQGHCKARNMKEAWFLHKEMVQKG 671 (751)
Q Consensus 626 ~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 671 (751)
.+++++.++.+ +.+...+..+...+.+.|++++|+..|+++++..
T Consensus 130 ~~~l~~al~~d-P~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~ 174 (198)
T PRK10370 130 REMIDKALALD-ANEVTALMLLASDAFMQADYAQAIELWQKVLDLN 174 (198)
T ss_pred HHHHHHHHHhC-CCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 77777766643 2245566666666667777777777777766653
No 127
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.51 E-value=3.9e-05 Score=86.27 Aligned_cols=241 Identities=10% Similarity=0.093 Sum_probs=151.8
Q ss_pred CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHH
Q 004470 426 GLEP-DEIVYTALIDGYCKAGGMKKAFSLHNNMVHMRLTPNVVTYTALADGLCKSGELETANELLHEMCRKGLQLNIYTY 504 (751)
Q Consensus 426 ~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~~ 504 (751)
+..| +...+..|+..+...+++++|.++.+...+..+. ....|..+...+.+.++.+++..+ .+
T Consensus 25 ~~~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~-~i~~yy~~G~l~~q~~~~~~~~lv--~~------------ 89 (906)
T PRK14720 25 NYSLSKFKELDDLIDAYKSENLTDEAKDICEEHLKEHKK-SISALYISGILSLSRRPLNDSNLL--NL------------ 89 (906)
T ss_pred cCCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCc-ceehHHHHHHHHHhhcchhhhhhh--hh------------
Confidence 3444 4567888999999999999999999977775422 444555555567777776665544 22
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 004470 505 NSIVNGLCKAGNILQAVKLMEDMEVAGFHPDTFTYTTIMDAYCKSGEMVKAHELLRDMLDKGLQPSVVTFNVLMNGFCMS 584 (751)
Q Consensus 505 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~ 584 (751)
+.......++.....+...+... .-+...+..+..+|-+.|+.++|..+++++++.. +.|+.+.|.+...|...
T Consensus 90 ---l~~~~~~~~~~~ve~~~~~i~~~--~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~ 163 (906)
T PRK14720 90 ---IDSFSQNLKWAIVEHICDKILLY--GENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE 163 (906)
T ss_pred ---hhhcccccchhHHHHHHHHHHhh--hhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh
Confidence 22233333443333344444443 3455678888899999999999999999999886 66888899999999888
Q ss_pred CChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHH
Q 004470 585 GMIEDGEKLLKWMLEKGLKPNAATYNPLIKQHCLRNDMRTTAKIYKGMCAQGITPD-GNTYNILLQGHCKARNMKEAWFL 663 (751)
Q Consensus 585 g~~~~A~~l~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~ 663 (751)
++++|.+++.+.+.. +...+++..+.++|.+++... |+ ...+.. +
T Consensus 164 -dL~KA~~m~~KAV~~---------------~i~~kq~~~~~e~W~k~~~~~--~~d~d~f~~----------------i 209 (906)
T PRK14720 164 -DKEKAITYLKKAIYR---------------FIKKKQYVGIEEIWSKLVHYN--SDDFDFFLR----------------I 209 (906)
T ss_pred -hHHHHHHHHHHHHHH---------------HHhhhcchHHHHHHHHHHhcC--cccchHHHH----------------H
Confidence 999999988887764 455667777788888777642 32 212111 1
Q ss_pred HHHHHHC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 004470 664 HKEMVQK-GFNLTTSSYNALIKGFLKRKKYLEARELFEEMRRGGLVADREIYYFFVDINF 722 (751)
Q Consensus 664 ~~~~~~~-~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 722 (751)
.+.+... |..--..++..+...|...+++++++.+++.+++.. +.|.....-++.+|.
T Consensus 210 ~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~-~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 210 ERKVLGHREFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHD-NKNNKAREELIRFYK 268 (906)
T ss_pred HHHHHhhhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcC-CcchhhHHHHHHHHH
Confidence 1111111 111123344445555555566666666666666643 334444555555554
No 128
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.51 E-value=3.2e-06 Score=75.15 Aligned_cols=121 Identities=12% Similarity=-0.055 Sum_probs=87.4
Q ss_pred HHHHHHHHHcCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 004470 591 EKLLKWMLEKGLKPNAATYNPLIKQHCLRNDMRTTAKIYKGMCAQGITPDGNTYNILLQGHCKARNMKEAWFLHKEMVQK 670 (751)
Q Consensus 591 ~~l~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 670 (751)
..++++.++. .|+. +..+...+...|++++|.+.|+..+... +.+...|..+...+.+.|++++|+..|+++.+.
T Consensus 13 ~~~~~~al~~--~p~~--~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l 87 (144)
T PRK15359 13 EDILKQLLSV--DPET--VYASGYASWQEGDYSRAVIDFSWLVMAQ-PWSWRAHIALAGTWMMLKEYTTAINFYGHALML 87 (144)
T ss_pred HHHHHHHHHc--CHHH--HHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 3456666654 3443 4456677778888888888888888753 336777788888888888888888888888877
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 004470 671 GFNLTTSSYNALIKGFLKRKKYLEARELFEEMRRGGLVADREIYYFFV 718 (751)
Q Consensus 671 ~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 718 (751)
++. ++..+..++.++...|++++|+..|+.+++.. +.++..+....
T Consensus 88 ~p~-~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~-p~~~~~~~~~~ 133 (144)
T PRK15359 88 DAS-HPEPVYQTGVCLKMMGEPGLAREAFQTAIKMS-YADASWSEIRQ 133 (144)
T ss_pred CCC-CcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHH
Confidence 654 77788888888888888888888888888753 34455554433
No 129
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.51 E-value=1.1e-05 Score=71.83 Aligned_cols=94 Identities=14% Similarity=-0.020 Sum_probs=54.2
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 004470 646 ILLQGHCKARNMKEAWFLHKEMVQKGFNLTTSSYNALIKGFLKRKKYLEARELFEEMRRGGLVADREIYYFFVDINFEEG 725 (751)
Q Consensus 646 ~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 725 (751)
.+...+...|++++|...|+.++...+. +...|..++.++.+.|++++|+..|+++.+.+ +.+...+..++.++.+.|
T Consensus 29 ~~g~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~-p~~~~a~~~lg~~l~~~g 106 (144)
T PRK15359 29 ASGYASWQEGDYSRAVIDFSWLVMAQPW-SWRAHIALAGTWMMLKEYTTAINFYGHALMLD-ASHPEPVYQTGVCLKMMG 106 (144)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCC-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHHHHHHcC
Confidence 3455555566666666666666555433 55555566666666666666666666666543 445555555666666666
Q ss_pred ChhHHHHHHHHHHHcC
Q 004470 726 NTEITLELCDAAIECY 741 (751)
Q Consensus 726 ~~~~A~~~~~~~~~~~ 741 (751)
+.++|++.++++++..
T Consensus 107 ~~~eAi~~~~~Al~~~ 122 (144)
T PRK15359 107 EPGLAREAFQTAIKMS 122 (144)
T ss_pred CHHHHHHHHHHHHHhC
Confidence 6666666666665543
No 130
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.46 E-value=3.3e-05 Score=72.33 Aligned_cols=152 Identities=13% Similarity=0.002 Sum_probs=106.9
Q ss_pred CCCCHHHHHHHHHhchhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 004470 233 TCDGLRMVVKSFTEFPELGICWNTASYNIMIHCLCRFGKIKEAHLLLLQMELRGCSPDVVSFSTIINGYCYLGELQRVLK 312 (751)
Q Consensus 233 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~ 312 (751)
..|+-+....+........+ .|....+..+....+.|++.+|+..|.+..... ++|...|+.+.-+|.+.|+++.|..
T Consensus 78 ~~G~a~~~l~~~~~~~~~~~-~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~-p~d~~~~~~lgaaldq~Gr~~~Ar~ 155 (257)
T COG5010 78 LRGDADSSLAVLQKSAIAYP-KDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA-PTDWEAWNLLGAALDQLGRFDEARR 155 (257)
T ss_pred hcccccchHHHHhhhhccCc-ccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC-CCChhhhhHHHHHHHHccChhHHHH
Confidence 45666666666666544322 255666667777788888888888888776543 3677788888888888888888888
Q ss_pred HHHHHHHCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 004470 313 LIEEMQIKGLKPNPYTYNSVVRLLCKTSKVVEAETILREMMNQGIVPDNVIYTTLIDGFCKMGNVAAAYRLFDEMR 388 (751)
Q Consensus 313 ~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 388 (751)
-|.+..+.- .-+...++.+.-.+.-.|+.+.|..++......+ .-|..+-..|.-.....|++++|.++...-.
T Consensus 156 ay~qAl~L~-~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~-~ad~~v~~NLAl~~~~~g~~~~A~~i~~~e~ 229 (257)
T COG5010 156 AYRQALELA-PNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSP-AADSRVRQNLALVVGLQGDFREAEDIAVQEL 229 (257)
T ss_pred HHHHHHHhc-cCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCC-CCchHHHHHHHHHHhhcCChHHHHhhccccc
Confidence 887777662 2356667777777777888888888877777664 2366667777777777888888877765443
No 131
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.44 E-value=0.00049 Score=64.60 Aligned_cols=150 Identities=17% Similarity=0.102 Sum_probs=82.1
Q ss_pred HHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHH----Hc
Q 004470 544 DAYCKSGEMVKAHELLRDMLDKGLQPSVVTFNVLMNGFCMSGMIEDGEKLLKWMLEKGLKPNAATYNPLIKQHC----LR 619 (751)
Q Consensus 544 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~g~~p~~~~~~~l~~~~~----~~ 619 (751)
..|++.|++++|.+...... +......=+..+.+..+.+-|.+.+++|.+- .+..|.+-|..++. ..
T Consensus 116 ~i~~~~~~~deAl~~~~~~~------~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~i---ded~tLtQLA~awv~la~gg 186 (299)
T KOG3081|consen 116 IIYMHDGDFDEALKALHLGE------NLEAAALNVQILLKMHRFDLAEKELKKMQQI---DEDATLTQLAQAWVKLATGG 186 (299)
T ss_pred HHhhcCCChHHHHHHHhccc------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc---chHHHHHHHHHHHHHHhccc
Confidence 34555555555555554411 1122222223344455555555555555542 13344444444432 23
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH-HH
Q 004470 620 NDMRTTAKIYKGMCAQGITPDGNTYNILLQGHCKARNMKEAWFLHKEMVQKGFNLTTSSYNALIKGFLKRKKYLEAR-EL 698 (751)
Q Consensus 620 g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~-~~ 698 (751)
+.+.+|.-+|++|.++ ..|+..+.+....++...|++++|..++++++.+... ++.+...++-.-...|+..++. +.
T Consensus 187 ek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~-dpetL~Nliv~a~~~Gkd~~~~~r~ 264 (299)
T KOG3081|consen 187 EKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAK-DPETLANLIVLALHLGKDAEVTERN 264 (299)
T ss_pred hhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCC-CHHHHHHHHHHHHHhCCChHHHHHH
Confidence 3466677777777653 4567777777777777777777777777777777555 5666666665555556554433 34
Q ss_pred HHHHHH
Q 004470 699 FEEMRR 704 (751)
Q Consensus 699 ~~~~~~ 704 (751)
+.+...
T Consensus 265 l~QLk~ 270 (299)
T KOG3081|consen 265 LSQLKL 270 (299)
T ss_pred HHHHHh
Confidence 444433
No 132
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.42 E-value=5.9e-06 Score=73.06 Aligned_cols=96 Identities=19% Similarity=0.128 Sum_probs=48.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 004470 644 YNILLQGHCKARNMKEAWFLHKEMVQKGFNLTTSSYNALIKGFLKRKKYLEARELFEEMRRGGLVADREIYYFFVDINFE 723 (751)
Q Consensus 644 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 723 (751)
...+...+...|++++|...++.+.+.++. +...+..++..+.+.|++++|...+++..+.+ +.+...+..++.++..
T Consensus 20 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~ 97 (135)
T TIGR02552 20 IYALAYNLYQQGRYDEALKLFQLLAAYDPY-NSRYWLGLAACCQMLKEYEEAIDAYALAAALD-PDDPRPYFHAAECLLA 97 (135)
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHH
Confidence 334444445555555555555555544322 44455555555555555555555555554432 3344445555555555
Q ss_pred cCChhHHHHHHHHHHHcC
Q 004470 724 EGNTEITLELCDAAIECY 741 (751)
Q Consensus 724 ~g~~~~A~~~~~~~~~~~ 741 (751)
.|++++|.++++++++..
T Consensus 98 ~g~~~~A~~~~~~al~~~ 115 (135)
T TIGR02552 98 LGEPESALKALDLAIEIC 115 (135)
T ss_pred cCCHHHHHHHHHHHHHhc
Confidence 555555555555555544
No 133
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.42 E-value=0.00015 Score=67.94 Aligned_cols=247 Identities=12% Similarity=0.072 Sum_probs=157.5
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHH
Q 004470 476 LCKSGELETANELLHEMCRKGLQLNIYTYNSIVNGLCKAGNILQAVKLMEDMEVAGFHPDTFTYTTIMDAYCKSGEMVKA 555 (751)
Q Consensus 476 ~~~~g~~~~A~~l~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 555 (751)
+.-.|++..++..-....... -+...-..+..+|...|.+..... ++.... .|.......+.......++.++-
T Consensus 18 ~fY~Gnyq~~ine~~~~~~~~--~~~e~d~y~~raylAlg~~~~~~~---eI~~~~-~~~lqAvr~~a~~~~~e~~~~~~ 91 (299)
T KOG3081|consen 18 YFYLGNYQQCINEAEKFSSSK--TDVELDVYMYRAYLALGQYQIVIS---EIKEGK-ATPLQAVRLLAEYLELESNKKSI 91 (299)
T ss_pred HHHhhHHHHHHHHHHhhcccc--chhHHHHHHHHHHHHccccccccc---cccccc-CChHHHHHHHHHHhhCcchhHHH
Confidence 333466666655444433321 233344445556666665543322 222222 34444444444444445554444
Q ss_pred HH-HHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 004470 556 HE-LLRDMLDKGLQPSVVTFNVLMNGFCMSGMIEDGEKLLKWMLEKGLKPNAATYNPLIKQHCLRNDMRTTAKIYKGMCA 634 (751)
Q Consensus 556 ~~-~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 634 (751)
.. +.+.+.......+......-...|+..|++++|++...... +......=...+.+..+.+-|.+.+++|.+
T Consensus 92 ~~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~------~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~ 165 (299)
T KOG3081|consen 92 LASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGE------NLEAAALNVQILLKMHRFDLAEKELKKMQQ 165 (299)
T ss_pred HHHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccc------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 43 44444444333343444444557889999999999887622 222222333456688899999999999997
Q ss_pred CCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 004470 635 QGITPDGNTYNILLQGHCK----ARNMKEAWFLHKEMVQKGFNLTTSSYNALIKGFLKRKKYLEARELFEEMRRGGLVAD 710 (751)
Q Consensus 635 ~g~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 710 (751)
- .+..|.+.|..++.+ .+.+.+|.-+|++|-++ ..|++.+.+..+.++...|++++|..+++.++.+. ..+
T Consensus 166 i---ded~tLtQLA~awv~la~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd-~~d 240 (299)
T KOG3081|consen 166 I---DEDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKD-AKD 240 (299)
T ss_pred c---chHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhcc-CCC
Confidence 3 367778878777764 45799999999999876 57799999999999999999999999999999975 667
Q ss_pred HHHHHHHHHHHHhcCChhHH-HHHHHHHHH
Q 004470 711 REIYYFFVDINFEEGNTEIT-LELCDAAIE 739 (751)
Q Consensus 711 ~~~~~~l~~~~~~~g~~~~A-~~~~~~~~~ 739 (751)
+++...++-+-...|.-.++ .+++.....
T Consensus 241 petL~Nliv~a~~~Gkd~~~~~r~l~QLk~ 270 (299)
T KOG3081|consen 241 PETLANLIVLALHLGKDAEVTERNLSQLKL 270 (299)
T ss_pred HHHHHHHHHHHHHhCCChHHHHHHHHHHHh
Confidence 88877777666666665443 344444433
No 134
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.37 E-value=7e-05 Score=76.29 Aligned_cols=150 Identities=17% Similarity=0.184 Sum_probs=93.4
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHHHHcCCCCCchhhhHHHHHHHHHhhhcCCCChhhHHHHHHHHHhcCChhHHHHH
Q 004470 128 ILEARCIVVQISVAAKDLKTAHGLIHDFWAKPNLDASIAFTHFVERLIYTYKDWGSDPHVFDIFFQVLVEARKLNEARKL 207 (751)
Q Consensus 128 ~~~~~~~~~~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 207 (751)
...+.+-.+......|.+++|+..|..+++.. |.|+..+...+..+.+.++.++|.+.
T Consensus 305 ~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~~----------------------P~N~~~~~~~~~i~~~~nk~~~A~e~ 362 (484)
T COG4783 305 GLAAQYGRALQTYLAGQYDEALKLLQPLIAAQ----------------------PDNPYYLELAGDILLEANKAKEAIER 362 (484)
T ss_pred chHHHHHHHHHHHHhcccchHHHHHHHHHHhC----------------------CCCHHHHHHHHHHHHHcCChHHHHHH
Confidence 34445555555555677777777777665543 66666677777777777777777777
Q ss_pred HHHHHhCCCccCHHhHHHHHHHHHhCCCCHHHHHHHHHhchhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 004470 208 FEKLLNYGLVISVDSCNLFLSRLSNTCDGLRMVVKSFTEFPELGICWNTASYNIMIHCLCRFGKIKEAHLLLLQMELRGC 287 (751)
Q Consensus 208 ~~~~~~~g~~p~~~~~~~ll~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 287 (751)
+++++.. .|+.......++..+.+.|+..+|+..++......+. |+..|..|..+|...|+..+|.....+
T Consensus 363 ~~kal~l--~P~~~~l~~~~a~all~~g~~~eai~~L~~~~~~~p~-dp~~w~~LAqay~~~g~~~~a~~A~AE------ 433 (484)
T COG4783 363 LKKALAL--DPNSPLLQLNLAQALLKGGKPQEAIRILNRYLFNDPE-DPNGWDLLAQAYAELGNRAEALLARAE------ 433 (484)
T ss_pred HHHHHhc--CCCccHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCC-CchHHHHHHHHHHHhCchHHHHHHHHH------
Confidence 7777766 5665544444444444566666777766666665544 666677777777666666666544332
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 004470 288 SPDVVSFSTIINGYCYLGELQRVLKLIEEMQIK 320 (751)
Q Consensus 288 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 320 (751)
+|...|++++|+..+....+.
T Consensus 434 ------------~~~~~G~~~~A~~~l~~A~~~ 454 (484)
T COG4783 434 ------------GYALAGRLEQAIIFLMRASQQ 454 (484)
T ss_pred ------------HHHhCCCHHHHHHHHHHHHHh
Confidence 334556666666666666554
No 135
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.37 E-value=0.00025 Score=65.98 Aligned_cols=189 Identities=13% Similarity=0.106 Sum_probs=123.1
Q ss_pred HcCCHHHHHHHHHHHHH---CC-CCCCHHH-HHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCh
Q 004470 513 KAGNILQAVKLMEDMEV---AG-FHPDTFT-YTTIMDAYCKSGEMVKAHELLRDMLDKGLQPSVVTFNVLMNGFCMSGMI 587 (751)
Q Consensus 513 ~~g~~~~A~~~~~~~~~---~~-~~~~~~~-~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~ 587 (751)
...+.++.++++.++.. .| ..++..+ |..++-+....|+.+.|...++.+.+. ++.+...-..-.-.+-..|++
T Consensus 24 ~~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~-fp~S~RV~~lkam~lEa~~~~ 102 (289)
T KOG3060|consen 24 TVRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDR-FPGSKRVGKLKAMLLEATGNY 102 (289)
T ss_pred cccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHh-CCCChhHHHHHHHHHHHhhch
Confidence 44577788887777754 23 3344433 444555566777788888888777665 333333322222334456778
Q ss_pred hHHHHHHHHHHHcCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 004470 588 EDGEKLLKWMLEKGLKPNAATYNPLIKQHCLRNDMRTTAKIYKGMCAQGITPDGNTYNILLQGHCKARNMKEAWFLHKEM 667 (751)
Q Consensus 588 ~~A~~l~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~ 667 (751)
++|+++++.+++.. +.|.+++..-+...-..|+.-+|++-+.+..+. +..|...|..+...|...|++++|.-.++++
T Consensus 103 ~~A~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ 180 (289)
T KOG3060|consen 103 KEAIEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLEEL 180 (289)
T ss_pred hhHHHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHH
Confidence 88888888777764 335666666666666777777777777776664 4557777777888888888888888888877
Q ss_pred HHCCCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHC
Q 004470 668 VQKGFNLTTSSYNALIKGFLKRK---KYLEARELFEEMRRG 705 (751)
Q Consensus 668 ~~~~~~p~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~ 705 (751)
+-..|. ++..+..+...+.-.| +.+-|.++|.+.++.
T Consensus 181 ll~~P~-n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl 220 (289)
T KOG3060|consen 181 LLIQPF-NPLYFQRLAEVLYTQGGAENLELARKYYERALKL 220 (289)
T ss_pred HHcCCC-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHh
Confidence 765443 6666677777766554 455677777777764
No 136
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.33 E-value=0.00019 Score=73.25 Aligned_cols=138 Identities=14% Similarity=0.130 Sum_probs=81.3
Q ss_pred HHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC-HhhHHHHHHHHHHcCCHHH
Q 004470 546 YCKSGEMVKAHELLRDMLDKGLQPSVVTFNVLMNGFCMSGMIEDGEKLLKWMLEKGLKPN-AATYNPLIKQHCLRNDMRT 624 (751)
Q Consensus 546 ~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~g~~p~-~~~~~~l~~~~~~~g~~~~ 624 (751)
+...|++++|+..++.++.. .+.|+..+....+.+.+.|+.++|.+.+++++.. .|+ ....-.+..+|.+.|+..+
T Consensus 316 ~~~~~~~d~A~~~l~~L~~~-~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l--~P~~~~l~~~~a~all~~g~~~e 392 (484)
T COG4783 316 TYLAGQYDEALKLLQPLIAA-QPDNPYYLELAGDILLEANKAKEAIERLKKALAL--DPNSPLLQLNLAQALLKGGKPQE 392 (484)
T ss_pred HHHhcccchHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc--CCCccHHHHHHHHHHHhcCChHH
Confidence 44556666666666666654 2445555555566666666666666666666654 344 3444455566666666666
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004470 625 TAKIYKGMCAQGITPDGNTYNILLQGHCKARNMKEAWFLHKEMVQKGFNLTTSSYNALIKGFLKRKKYLEARELFEEMRR 704 (751)
Q Consensus 625 A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 704 (751)
|+.+++...... +.|+..|..|..+|...|+..+|..-.. ..|.-.|++++|...+..+.+
T Consensus 393 ai~~L~~~~~~~-p~dp~~w~~LAqay~~~g~~~~a~~A~A------------------E~~~~~G~~~~A~~~l~~A~~ 453 (484)
T COG4783 393 AIRILNRYLFND-PEDPNGWDLLAQAYAELGNRAEALLARA------------------EGYALAGRLEQAIIFLMRASQ 453 (484)
T ss_pred HHHHHHHHhhcC-CCCchHHHHHHHHHHHhCchHHHHHHHH------------------HHHHhCCCHHHHHHHHHHHHH
Confidence 666666665542 3456666666666666666655544322 234445666666666666665
Q ss_pred C
Q 004470 705 G 705 (751)
Q Consensus 705 ~ 705 (751)
.
T Consensus 454 ~ 454 (484)
T COG4783 454 Q 454 (484)
T ss_pred h
Confidence 4
No 137
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.27 E-value=0.0008 Score=62.72 Aligned_cols=191 Identities=15% Similarity=0.073 Sum_probs=148.2
Q ss_pred HhcCCHHHHHHHHHHHHHc---C-CCCCHHH-HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC
Q 004470 477 CKSGELETANELLHEMCRK---G-LQLNIYT-YNSIVNGLCKAGNILQAVKLMEDMEVAGFHPDTFTYTTIMDAYCKSGE 551 (751)
Q Consensus 477 ~~~g~~~~A~~l~~~m~~~---g-~~~~~~~-~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 551 (751)
+...+.++..+++.++... | ..++..+ |..+.-+....|+.+.|...++.+...- +-+..+-..-...+-..|+
T Consensus 23 ~~~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~f-p~S~RV~~lkam~lEa~~~ 101 (289)
T KOG3060|consen 23 ETVRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRF-PGSKRVGKLKAMLLEATGN 101 (289)
T ss_pred ccccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhC-CCChhHHHHHHHHHHHhhc
Confidence 3456788999999888643 4 5556653 5556667778899999999999988763 3343333333334567899
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHH
Q 004470 552 MVKAHELLRDMLDKGLQPSVVTFNVLMNGFCMSGMIEDGEKLLKWMLEKGLKPNAATYNPLIKQHCLRNDMRTTAKIYKG 631 (751)
Q Consensus 552 ~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 631 (751)
+++|.++++.+++.+ +.|.+++-.=+...-..|+.-+|++-+....+. +..|...|.-+...|...|++++|.-.+++
T Consensus 102 ~~~A~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClEE 179 (289)
T KOG3060|consen 102 YKEAIEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLEE 179 (289)
T ss_pred hhhHHHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHHH
Confidence 999999999999886 667788887777777889989999999999887 556999999999999999999999999999
Q ss_pred HHHCCCCC-CHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHCCC
Q 004470 632 MCAQGITP-DGNTYNILLQGHCKAR---NMKEAWFLHKEMVQKGF 672 (751)
Q Consensus 632 m~~~g~~p-~~~~~~~li~~~~~~g---~~~~A~~~~~~~~~~~~ 672 (751)
++-. .| ++..+..+.+.+.-.| +.+-|.++|.+.++..+
T Consensus 180 ~ll~--~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~ 222 (289)
T KOG3060|consen 180 LLLI--QPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLNP 222 (289)
T ss_pred HHHc--CCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhCh
Confidence 9874 45 5666667777665444 67789999999988743
No 138
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.22 E-value=6.6e-05 Score=67.08 Aligned_cols=126 Identities=11% Similarity=0.080 Sum_probs=90.0
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHH
Q 004470 609 YNPLIKQHCLRNDMRTTAKIYKGMCAQGITPD---GNTYNILLQGHCKARNMKEAWFLHKEMVQKGFNLT--TSSYNALI 683 (751)
Q Consensus 609 ~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~---~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~--~~~~~~l~ 683 (751)
|..++..+ ..++...+.+.++.+.+.. +.+ ....-.+...+...|++++|...|+.+.+....|+ ......|.
T Consensus 15 y~~~~~~~-~~~~~~~~~~~~~~l~~~~-~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA 92 (145)
T PF09976_consen 15 YEQALQAL-QAGDPAKAEAAAEQLAKDY-PSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLA 92 (145)
T ss_pred HHHHHHHH-HCCCHHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHH
Confidence 33333344 4788888888888888753 222 23344456778888999999999999988763332 23556678
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 004470 684 KGFLKRKKYLEARELFEEMRRGGLVADREIYYFFVDINFEEGNTEITLELCDAAI 738 (751)
Q Consensus 684 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 738 (751)
..+...|++++|+..++..... ...+..+...+++|.+.|++++|+..|++++
T Consensus 93 ~~~~~~~~~d~Al~~L~~~~~~--~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~Al 145 (145)
T PF09976_consen 93 RILLQQGQYDEALATLQQIPDE--AFKALAAELLGDIYLAQGDYDEARAAYQKAL 145 (145)
T ss_pred HHHHHcCCHHHHHHHHHhccCc--chHHHHHHHHHHHHHHCCCHHHHHHHHHHhC
Confidence 8888999999999998774332 3345667788899999999999999988763
No 139
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.13 E-value=5.6e-05 Score=66.75 Aligned_cols=106 Identities=8% Similarity=-0.112 Sum_probs=57.5
Q ss_pred hhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHcCCCCCchhhhHHHHHHHHHhhhcCCCChhhHHHHHHHHHhcCC
Q 004470 121 ACLRREPILEARCIVVQISVAAKDLKTAHGLIHDFWAKPNLDASIAFTHFVERLIYTYKDWGSDPHVFDIFFQVLVEARK 200 (751)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~g~ 200 (751)
+...+|.+......++..+...|++++|...++.++..+ |.++.++..++.++...|+
T Consensus 9 ~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~----------------------p~~~~~~~~la~~~~~~~~ 66 (135)
T TIGR02552 9 LLGLDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYD----------------------PYNSRYWLGLAACCQMLKE 66 (135)
T ss_pred HHcCChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhC----------------------CCcHHHHHHHHHHHHHHHH
Confidence 333444445555555666666666666666666655433 4455566666666666666
Q ss_pred hhHHHHHHHHHHhCCCccCHHhHHHHHHHHHhCCCCHHHHHHHHHhchhc
Q 004470 201 LNEARKLFEKLLNYGLVISVDSCNLFLSRLSNTCDGLRMVVKSFTEFPEL 250 (751)
Q Consensus 201 ~~~A~~~~~~~~~~g~~p~~~~~~~ll~~l~~~~~~~~~a~~~~~~~~~~ 250 (751)
+++|...++++++. .|+.......++.++...|++++|.+.|+++.+.
T Consensus 67 ~~~A~~~~~~~~~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 114 (135)
T TIGR02552 67 YEEAIDAYALAAAL--DPDDPRPYFHAAECLLALGEPESALKALDLAIEI 114 (135)
T ss_pred HHHHHHHHHHHHhc--CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 66666666666554 2333333333333443455555555555555554
No 140
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=98.07 E-value=6.5e-06 Score=65.62 Aligned_cols=82 Identities=17% Similarity=0.239 Sum_probs=60.8
Q ss_pred cCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHH
Q 004470 654 ARNMKEAWFLHKEMVQKGFN-LTTSSYNALIKGFLKRKKYLEARELFEEMRRGGLVADREIYYFFVDINFEEGNTEITLE 732 (751)
Q Consensus 654 ~g~~~~A~~~~~~~~~~~~~-p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 732 (751)
.|++++|+.+++++.+..+. ++...+..++.+|.+.|++++|+.++++ .+.+ +.+......++.++.+.|++++|++
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~-~~~~~~~~l~a~~~~~l~~y~eAi~ 79 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLD-PSNPDIHYLLARCLLKLGKYEEAIK 79 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHH-HCHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCC-CCCHHHHHHHHHHHHHhCCHHHHHH
Confidence 57889999999999887553 2455666689999999999999999988 3322 2344555667889999999999999
Q ss_pred HHHHH
Q 004470 733 LCDAA 737 (751)
Q Consensus 733 ~~~~~ 737 (751)
.++++
T Consensus 80 ~l~~~ 84 (84)
T PF12895_consen 80 ALEKA 84 (84)
T ss_dssp HHHHH
T ss_pred HHhcC
Confidence 88764
No 141
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=98.04 E-value=0.025 Score=60.26 Aligned_cols=204 Identities=14% Similarity=0.120 Sum_probs=121.3
Q ss_pred CCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCccCHHhHHHHHHHH---------HhCCCCHHHHHHHHHhchhcCC
Q 004470 182 GSDPHVFDIFFQVLVEARKLNEARKLFEKLLNYGLVISVDSCNLFLSRL---------SNTCDGLRMVVKSFTEFPELGI 252 (751)
Q Consensus 182 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~l---------~~~~~~~~~a~~~~~~~~~~~~ 252 (751)
.+.|..|.+|+..-...-.++-|...|-+.... |.+.....+-... ..-.|++++|.+.|-++-..+
T Consensus 689 nPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY---~Gik~vkrl~~i~s~~~q~aei~~~~g~feeaek~yld~drrD- 764 (1189)
T KOG2041|consen 689 NPHPRLWRLLAEYALFKLALDTAEHAFVRCGDY---AGIKLVKRLRTIHSKEQQRAEISAFYGEFEEAEKLYLDADRRD- 764 (1189)
T ss_pred CCchHHHHHHHHHHHHHHhhhhHhhhhhhhccc---cchhHHHHhhhhhhHHHHhHhHhhhhcchhHhhhhhhccchhh-
Confidence 567889999999888888888888888766542 3332111111111 111378888888887776652
Q ss_pred CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHH
Q 004470 253 CWNTASYNIMIHCLCRFGKIKEAHLLLLQMELRGC--SPDVVSFSTIINGYCYLGELQRVLKLIEEMQIKGLKPNPYTYN 330 (751)
Q Consensus 253 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~--~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~ 330 (751)
..|..+.+.|++-...++++.-.. +. ..-...|+.+...+.....+++|.+.+..-.. ..
T Consensus 765 --------LAielr~klgDwfrV~qL~r~g~~-d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~---------~e 826 (1189)
T KOG2041|consen 765 --------LAIELRKKLGDWFRVYQLIRNGGS-DDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGD---------TE 826 (1189)
T ss_pred --------hhHHHHHhhhhHHHHHHHHHccCC-CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc---------hH
Confidence 345667777777777666643111 11 11234677777777777788888877765321 12
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 004470 331 SVVRLLCKTSKVVEAETILREMMNQGIVPDNVIYTTLIDGFCKMGNVAAAYRLFDEMRGLNIIPDLLTYTAIICGFCLTG 410 (751)
Q Consensus 331 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g 410 (751)
..+.++.+...+++-+.+-+.+ +-|....-.+.+++.+.|.-++|.+.|-+-.. |. ..+..|...+
T Consensus 827 ~~~ecly~le~f~~LE~la~~L-----pe~s~llp~~a~mf~svGMC~qAV~a~Lr~s~----pk-----aAv~tCv~Ln 892 (1189)
T KOG2041|consen 827 NQIECLYRLELFGELEVLARTL-----PEDSELLPVMADMFTSVGMCDQAVEAYLRRSL----PK-----AAVHTCVELN 892 (1189)
T ss_pred hHHHHHHHHHhhhhHHHHHHhc-----CcccchHHHHHHHHHhhchHHHHHHHHHhccC----cH-----HHHHHHHHHH
Confidence 3455666666665544433332 33455566677778888888877776644321 21 2344556666
Q ss_pred CHHHHHHHHHH
Q 004470 411 KMVEAEKLFHE 421 (751)
Q Consensus 411 ~~~~A~~~~~~ 421 (751)
++.+|.++-+.
T Consensus 893 QW~~avelaq~ 903 (1189)
T KOG2041|consen 893 QWGEAVELAQR 903 (1189)
T ss_pred HHHHHHHHHHh
Confidence 77777766544
No 142
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.03 E-value=0.00017 Score=74.49 Aligned_cols=121 Identities=17% Similarity=0.171 Sum_probs=67.6
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 004470 611 PLIKQHCLRNDMRTTAKIYKGMCAQGITPDGNTYNILLQGHCKARNMKEAWFLHKEMVQKGFNLTTSSYNALIKGFLKRK 690 (751)
Q Consensus 611 ~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 690 (751)
.|+..+...++++.|.++++++.+.. |+.. ..++..+...++-.+|++++.+.++..+. +...+..-+..|.+.+
T Consensus 174 ~Ll~~l~~t~~~~~ai~lle~L~~~~--pev~--~~LA~v~l~~~~E~~AI~ll~~aL~~~p~-d~~LL~~Qa~fLl~k~ 248 (395)
T PF09295_consen 174 TLLKYLSLTQRYDEAIELLEKLRERD--PEVA--VLLARVYLLMNEEVEAIRLLNEALKENPQ-DSELLNLQAEFLLSKK 248 (395)
T ss_pred HHHHHHhhcccHHHHHHHHHHHHhcC--CcHH--HHHHHHHHhcCcHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhcC
Confidence 34444445555666666666665542 3322 23455555555666666666666654332 4555555555566666
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 004470 691 KYLEARELFEEMRRGGLVADREIYYFFVDINFEEGNTEITLELCDAA 737 (751)
Q Consensus 691 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 737 (751)
+++.|+++.+++.+.. |.+..+|..|+.+|.+.|++++|+-.++.+
T Consensus 249 ~~~lAL~iAk~av~ls-P~~f~~W~~La~~Yi~~~d~e~ALlaLNs~ 294 (395)
T PF09295_consen 249 KYELALEIAKKAVELS-PSEFETWYQLAECYIQLGDFENALLALNSC 294 (395)
T ss_pred CHHHHHHHHHHHHHhC-chhHHHHHHHHHHHHhcCCHHHHHHHHhcC
Confidence 6666666666666542 334456666666666666666666555544
No 143
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=98.03 E-value=0.0001 Score=64.41 Aligned_cols=87 Identities=10% Similarity=0.022 Sum_probs=43.3
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 004470 616 HCLRNDMRTTAKIYKGMCAQGITPDGNTYNILLQGHCKARNMKEAWFLHKEMVQKGFNLTTSSYNALIKGFLKRKKYLEA 695 (751)
Q Consensus 616 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A 695 (751)
+...|++++|..+|+-+...+ +-+..-|..|.-++-..|++++|+..|..+...++. |+..+-.++.++...|+.+.|
T Consensus 45 ly~~G~l~~A~~~f~~L~~~D-p~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~d-dp~~~~~ag~c~L~lG~~~~A 122 (157)
T PRK15363 45 LMEVKEFAGAARLFQLLTIYD-AWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKID-APQAPWAAAECYLACDNVCYA 122 (157)
T ss_pred HHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CchHHHHHHHHHHHcCCHHHH
Confidence 445555555555555554432 113333444455555555555555555555554433 445555555555555555555
Q ss_pred HHHHHHHHH
Q 004470 696 RELFEEMRR 704 (751)
Q Consensus 696 ~~~~~~~~~ 704 (751)
.+-|+..+.
T Consensus 123 ~~aF~~Ai~ 131 (157)
T PRK15363 123 IKALKAVVR 131 (157)
T ss_pred HHHHHHHHH
Confidence 555555444
No 144
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=97.96 E-value=0.03 Score=57.01 Aligned_cols=136 Identities=17% Similarity=0.222 Sum_probs=79.5
Q ss_pred hhHHHHHHHHHHHcCCCCCHhhHHHHH----HHHH---HcCCHHHHHHHHHHHHHCCCCCC----HHHHHHHHHH--HHh
Q 004470 587 IEDGEKLLKWMLEKGLKPNAATYNPLI----KQHC---LRNDMRTTAKIYKGMCAQGITPD----GNTYNILLQG--HCK 653 (751)
Q Consensus 587 ~~~A~~l~~~~~~~g~~p~~~~~~~l~----~~~~---~~g~~~~A~~~~~~m~~~g~~p~----~~~~~~li~~--~~~ 653 (751)
-++|+.+++..++-. .-|...-|.+. ..|. ....+..-..+-+-+.+.|+.|- ...-|.|.++ +..
T Consensus 396 dekalnLLk~il~ft-~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~LaDAEyLys 474 (549)
T PF07079_consen 396 DEKALNLLKLILQFT-NYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIANFLADAEYLYS 474 (549)
T ss_pred cHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHHHHHHh
Confidence 666777776666531 11222222211 1121 22333444444444555677663 3344555443 456
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHH
Q 004470 654 ARNMKEAWFLHKEMVQKGFNLTTSSYNALIKGFLKRKKYLEARELFEEMRRGGLVADREIYYFFVDINFEEGNTEITLEL 733 (751)
Q Consensus 654 ~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 733 (751)
.|++.++.-.-.-+.+ +.|++.+|..++-++....++++|..++.. +||+..++.. +.++|.-+
T Consensus 475 qgey~kc~~ys~WL~~--iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~-----LP~n~~~~ds---------kvqKAl~l 538 (549)
T PF07079_consen 475 QGEYHKCYLYSSWLTK--IAPSPQAYRLLGLCLMENKRYQEAWEYLQK-----LPPNERMRDS---------KVQKALAL 538 (549)
T ss_pred cccHHHHHHHHHHHHH--hCCcHHHHHHHHHHHHHHhhHHHHHHHHHh-----CCCchhhHHH---------HHHHHHHH
Confidence 7888887655444433 567888999888888888899999988876 5777777764 34556555
Q ss_pred HHHHHH
Q 004470 734 CDAAIE 739 (751)
Q Consensus 734 ~~~~~~ 739 (751)
+.+-+.
T Consensus 539 CqKh~~ 544 (549)
T PF07079_consen 539 CQKHLP 544 (549)
T ss_pred HHHhhh
Confidence 555443
No 145
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.96 E-value=0.00014 Score=59.20 Aligned_cols=95 Identities=22% Similarity=0.193 Sum_probs=61.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 004470 644 YNILLQGHCKARNMKEAWFLHKEMVQKGFNLTTSSYNALIKGFLKRKKYLEARELFEEMRRGGLVADREIYYFFVDINFE 723 (751)
Q Consensus 644 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 723 (751)
+..++..+...|++++|...++++.+..+. +...+..++..+...|++++|.+.++...+.. +.+...+..++..+..
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 80 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELDPD-NADAYYNLAAAYYKLGKYEEALEDYEKALELD-PDNAKAYYNLGLAYYK 80 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CcchhHHHHHHHHHHH
Confidence 344555666667777777777777665433 44566666777777777777777777776643 3444566666677777
Q ss_pred cCChhHHHHHHHHHHHc
Q 004470 724 EGNTEITLELCDAAIEC 740 (751)
Q Consensus 724 ~g~~~~A~~~~~~~~~~ 740 (751)
.|++++|.+.++++++.
T Consensus 81 ~~~~~~a~~~~~~~~~~ 97 (100)
T cd00189 81 LGKYEEALEAYEKALEL 97 (100)
T ss_pred HHhHHHHHHHHHHHHcc
Confidence 77777777777776654
No 146
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.95 E-value=0.00016 Score=62.11 Aligned_cols=100 Identities=15% Similarity=0.037 Sum_probs=53.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC--CCCHHHHHHHHH
Q 004470 644 YNILLQGHCKARNMKEAWFLHKEMVQKGFN--LTTSSYNALIKGFLKRKKYLEARELFEEMRRGGL--VADREIYYFFVD 719 (751)
Q Consensus 644 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~--p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~~~~l~~ 719 (751)
+..++..+.+.|++++|.+.++++++..+. .....+..++.++.+.|++++|...++.+..... +.....+..++.
T Consensus 5 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~ 84 (119)
T TIGR02795 5 YYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGM 84 (119)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHH
Confidence 344455555566666666666666554321 0123444556666666666666666666655321 112344555556
Q ss_pred HHHhcCChhHHHHHHHHHHHcCCC
Q 004470 720 INFEEGNTEITLELCDAAIECYLV 743 (751)
Q Consensus 720 ~~~~~g~~~~A~~~~~~~~~~~~~ 743 (751)
++.+.|+.++|.+.++++++.+..
T Consensus 85 ~~~~~~~~~~A~~~~~~~~~~~p~ 108 (119)
T TIGR02795 85 SLQELGDKEKAKATLQQVIKRYPG 108 (119)
T ss_pred HHHHhCChHHHHHHHHHHHHHCcC
Confidence 666666666666666666665543
No 147
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=97.93 E-value=0.00024 Score=63.47 Aligned_cols=94 Identities=14% Similarity=0.122 Sum_probs=55.0
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHhCCCccCHH-hHHHHHHHHHhCCCCHHHHHHHHHhchhcCCCcCHHHHHHHHH
Q 004470 186 HVFDIFFQVLVEARKLNEARKLFEKLLNYGLVISVD-SCNLFLSRLSNTCDGLRMVVKSFTEFPELGICWNTASYNIMIH 264 (751)
Q Consensus 186 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~-~~~~ll~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 264 (751)
.+...++..+...|++++|...|+.++.....|+.. ....-+..+....|++++|+..++..... ......+....+
T Consensus 49 ~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~Al~~L~~~~~~--~~~~~~~~~~Gd 126 (145)
T PF09976_consen 49 LAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDEALATLQQIPDE--AFKALAAELLGD 126 (145)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhccCc--chHHHHHHHHHH
Confidence 455667777888888888888888887764333221 12222344444566666666666554332 223445555666
Q ss_pred HHHhcCCHHHHHHHHHH
Q 004470 265 CLCRFGKIKEAHLLLLQ 281 (751)
Q Consensus 265 ~~~~~g~~~~A~~~~~~ 281 (751)
.|.+.|+.++|...|+.
T Consensus 127 i~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 127 IYLAQGDYDEARAAYQK 143 (145)
T ss_pred HHHHCCCHHHHHHHHHH
Confidence 66666666666666654
No 148
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=97.93 E-value=1.5e-05 Score=51.18 Aligned_cols=31 Identities=35% Similarity=0.851 Sum_probs=12.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 004470 294 FSTIINGYCYLGELQRVLKLIEEMQIKGLKP 324 (751)
Q Consensus 294 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 324 (751)
||++|.+|++.|++++|.++|++|.+.|++|
T Consensus 3 ~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p 33 (35)
T TIGR00756 3 YNTLIDGLCKAGRVEEALELFKEMLERGIEP 33 (35)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHcCCCC
Confidence 3344444444444444444444444433333
No 149
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.91 E-value=0.0046 Score=61.83 Aligned_cols=232 Identities=12% Similarity=-0.023 Sum_probs=125.4
Q ss_pred HHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHH-------------HH
Q 004470 509 NGLCKAGNILQAVKLMEDMEVAGFHPDTFTYTTIMDAYCKSGEMVKAHELLRDMLDKGLQPSVVT-------------FN 575 (751)
Q Consensus 509 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~-------------~~ 575 (751)
.++.-.|+.++|.+.-....+.. ..+......-..++.-.++.+.|...|++.+..+ |+... +.
T Consensus 177 ~cl~~~~~~~~a~~ea~~ilkld-~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ld--pdh~~sk~~~~~~k~le~~k 253 (486)
T KOG0550|consen 177 ECLAFLGDYDEAQSEAIDILKLD-ATNAEALYVRGLCLYYNDNADKAINHFQQALRLD--PDHQKSKSASMMPKKLEVKK 253 (486)
T ss_pred hhhhhcccchhHHHHHHHHHhcc-cchhHHHHhcccccccccchHHHHHHHhhhhccC--hhhhhHHhHhhhHHHHHHHH
Confidence 34556677777777766666543 2233222222223345567777777777776542 33221 11
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHc---CCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHH
Q 004470 576 VLMNGFCMSGMIEDGEKLLKWMLEK---GLKPNAATYNPLIKQHCLRNDMRTTAKIYKGMCAQGITPD-GNTYNILLQGH 651 (751)
Q Consensus 576 ~li~~~~~~g~~~~A~~l~~~~~~~---g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~li~~~ 651 (751)
.-.+-..+.|++..|.+.+.+.+.. ...|+...|........+.|+.++|+.--++..+. .|. ...|..-..++
T Consensus 254 ~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~i--D~syikall~ra~c~ 331 (486)
T KOG0550|consen 254 ERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKI--DSSYIKALLRRANCH 331 (486)
T ss_pred hhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhc--CHHHHHHHHHHHHHH
Confidence 1123345678888888888888764 23344555666666677888888888877777663 221 22233334555
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH---HhcCCh
Q 004470 652 CKARNMKEAWFLHKEMVQKGFNL-TTSSYNALIKGFLKRKKYLEARELFEEMRRGGLVADREIYYFFVDIN---FEEGNT 727 (751)
Q Consensus 652 ~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~---~~~g~~ 727 (751)
...++|++|.+-+++..+....+ ...++.....++-+..+ .+=.+++.-.......+....|..+.-.+ ...|..
T Consensus 332 l~le~~e~AV~d~~~a~q~~~s~e~r~~l~~A~~aLkkSkR-kd~ykilGi~~~as~~eikkayrk~AL~~Hpd~~agsq 410 (486)
T KOG0550|consen 332 LALEKWEEAVEDYEKAMQLEKDCEIRRTLREAQLALKKSKR-KDWYKILGISRNASDDEIKKAYRKLALVHHPDKNAGSQ 410 (486)
T ss_pred HHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhhh-hhHHHHhhhhhhcccchhhhHHHHHHHHhCCCcCcchh
Confidence 56778888888888877653321 12233333333333222 22222332222222234445554444332 233556
Q ss_pred hHHHHHHHHHHHcCCCCCC
Q 004470 728 EITLELCDAAIECYLVGKA 746 (751)
Q Consensus 728 ~~A~~~~~~~~~~~~~~~~ 746 (751)
.+|...|+++-+.+.+.++
T Consensus 411 ~eaE~kFkevgeAy~il~d 429 (486)
T KOG0550|consen 411 KEAEAKFKEVGEAYTILSD 429 (486)
T ss_pred HHHHHHHHHHHHHHHHhcC
Confidence 7777777777766655443
No 150
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=97.88 E-value=2.4e-05 Score=50.18 Aligned_cols=34 Identities=44% Similarity=0.773 Sum_probs=32.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCH
Q 004470 258 SYNIMIHCLCRFGKIKEAHLLLLQMELRGCSPDV 291 (751)
Q Consensus 258 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 291 (751)
+||.+|.+|++.|++++|.++|++|.+.|+.||.
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 7999999999999999999999999999999973
No 151
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=97.85 E-value=0.0006 Score=70.50 Aligned_cols=125 Identities=14% Similarity=0.137 Sum_probs=84.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHH
Q 004470 538 TYTTIMDAYCKSGEMVKAHELLRDMLDKGLQPSVVTFNVLMNGFCMSGMIEDGEKLLKWMLEKGLKPNAATYNPLIKQHC 617 (751)
Q Consensus 538 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~g~~p~~~~~~~l~~~~~ 617 (751)
....|+..+...++++.|.++|+++.+.. |+. ...++..+...++-.+|.+++++.++.. +-+......-...+.
T Consensus 171 Lv~~Ll~~l~~t~~~~~ai~lle~L~~~~--pev--~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~fLl 245 (395)
T PF09295_consen 171 LVDTLLKYLSLTQRYDEAIELLEKLRERD--PEV--AVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAEFLL 245 (395)
T ss_pred HHHHHHHHHhhcccHHHHHHHHHHHHhcC--CcH--HHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence 34455566666777888888888877663 443 3446666667777777888877777652 225555555666677
Q ss_pred HcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004470 618 LRNDMRTTAKIYKGMCAQGITPD-GNTYNILLQGHCKARNMKEAWFLHKEMVQ 669 (751)
Q Consensus 618 ~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 669 (751)
..++.+.|+++.+++.+. .|+ ..+|..|..+|.+.|++++|+..++.+.-
T Consensus 246 ~k~~~~lAL~iAk~av~l--sP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm 296 (395)
T PF09295_consen 246 SKKKYELALEIAKKAVEL--SPSEFETWYQLAECYIQLGDFENALLALNSCPM 296 (395)
T ss_pred hcCCHHHHHHHHHHHHHh--CchhHHHHHHHHHHHHhcCCHHHHHHHHhcCcC
Confidence 777778888888777774 453 45777777888888888888777776543
No 152
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.83 E-value=0.0043 Score=62.01 Aligned_cols=52 Identities=10% Similarity=-0.068 Sum_probs=43.3
Q ss_pred cCChHHHHHHHHhhhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHcCC
Q 004470 108 RSDYRLVLDFFDWACLRREPILEARCIVVQISVAAKDLKTAHGLIHDFWAKP 159 (751)
Q Consensus 108 ~~~~~~al~~f~~~~~~~~~~~~~~~~~~~~l~~~~~~~~a~~~l~~~~~~~ 159 (751)
+++...||..+..|..-.|.+...|...+..+...+++++|..-.++.++..
T Consensus 62 ~k~Y~nal~~yt~Ai~~~pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~k 113 (486)
T KOG0550|consen 62 QKTYGNALKNYTFAIDMCPDNASYYSNRAATLMMLGRFEEALGDARQSVRLK 113 (486)
T ss_pred HhhHHHHHHHHHHHHHhCccchhhhchhHHHHHHHHhHhhcccchhhheecC
Confidence 5677889999999999899888888888888888899998887777766653
No 153
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=97.80 E-value=3.5e-05 Score=48.99 Aligned_cols=32 Identities=25% Similarity=0.464 Sum_probs=16.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 004470 258 SYNIMIHCLCRFGKIKEAHLLLLQMELRGCSP 289 (751)
Q Consensus 258 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 289 (751)
+||.++.++++.|+++.|.++|++|.+.|+.|
T Consensus 3 ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 3 TYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 45555555555555555555555555554443
No 154
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=97.77 E-value=3.8e-05 Score=48.82 Aligned_cols=33 Identities=24% Similarity=0.578 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 004470 292 VSFSTIINGYCYLGELQRVLKLIEEMQIKGLKP 324 (751)
Q Consensus 292 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 324 (751)
.+|+.+|.+|++.|+++.|.++|++|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 466666666666666666666666666666655
No 155
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.77 E-value=0.00035 Score=72.60 Aligned_cols=104 Identities=14% Similarity=0.129 Sum_probs=86.3
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 004470 612 LIKQHCLRNDMRTTAKIYKGMCAQGITPDGNTYNILLQGHCKARNMKEAWFLHKEMVQKGFNLTTSSYNALIKGFLKRKK 691 (751)
Q Consensus 612 l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 691 (751)
....+...|++++|++.|+++++.+ +.+...|..+..+|.+.|++++|+..++++++..+. +...|..++.+|...|+
T Consensus 8 ~a~~a~~~~~~~~Ai~~~~~Al~~~-P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~-~~~a~~~lg~~~~~lg~ 85 (356)
T PLN03088 8 KAKEAFVDDDFALAVDLYTQAIDLD-PNNAELYADRAQANIKLGNFTEAVADANKAIELDPS-LAKAYLRKGTACMKLEE 85 (356)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-CHHHHHHHHHHHHHhCC
Confidence 3455678999999999999999864 336778888999999999999999999999998654 77889999999999999
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 004470 692 YLEARELFEEMRRGGLVADREIYYFFV 718 (751)
Q Consensus 692 ~~~A~~~~~~~~~~~~~~~~~~~~~l~ 718 (751)
+++|+..|+++++.+ +.+......+.
T Consensus 86 ~~eA~~~~~~al~l~-P~~~~~~~~l~ 111 (356)
T PLN03088 86 YQTAKAALEKGASLA-PGDSRFTKLIK 111 (356)
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHH
Confidence 999999999999864 44555544443
No 156
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.70 E-value=0.0015 Score=55.97 Aligned_cols=99 Identities=9% Similarity=-0.042 Sum_probs=66.6
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC--CHHHHHHHH
Q 004470 608 TYNPLIKQHCLRNDMRTTAKIYKGMCAQGIT--PDGNTYNILLQGHCKARNMKEAWFLHKEMVQKGFNL--TTSSYNALI 683 (751)
Q Consensus 608 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~--p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p--~~~~~~~l~ 683 (751)
++..++..+...|++++|.+.++.+...... .....+..+...+.+.|++++|...++.+....+.. ...++..++
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~ 83 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLG 83 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHH
Confidence 3445556666777777777777777664211 113455667777888888888888888877653331 245677777
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCC
Q 004470 684 KGFLKRKKYLEARELFEEMRRGG 706 (751)
Q Consensus 684 ~~~~~~g~~~~A~~~~~~~~~~~ 706 (751)
.++.+.|++++|.+.++++++..
T Consensus 84 ~~~~~~~~~~~A~~~~~~~~~~~ 106 (119)
T TIGR02795 84 MSLQELGDKEKAKATLQQVIKRY 106 (119)
T ss_pred HHHHHhCChHHHHHHHHHHHHHC
Confidence 77888888888888888887753
No 157
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=97.66 E-value=0.12 Score=55.25 Aligned_cols=154 Identities=16% Similarity=0.088 Sum_probs=73.9
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCC--CCHHHHHHHHHHHHhcCCHHHHHH
Q 004470 340 SKVVEAETILREMMNQGIVPDNVIYTTLIDGFCKMGNVAAAYRLFDEMRGLNII--PDLLTYTAIICGFCLTGKMVEAEK 417 (751)
Q Consensus 340 g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~--p~~~~~~~li~~~~~~g~~~~A~~ 417 (751)
|++++|++++-+|-.+. ..|..+.+.|++-...++++.--. +.. --...|+.+...+.....+++|.+
T Consensus 748 g~feeaek~yld~drrD---------LAielr~klgDwfrV~qL~r~g~~-d~dD~~~e~A~r~ig~~fa~~~~We~A~~ 817 (1189)
T KOG2041|consen 748 GEFEEAEKLYLDADRRD---------LAIELRKKLGDWFRVYQLIRNGGS-DDDDEGKEDAFRNIGETFAEMMEWEEAAK 817 (1189)
T ss_pred cchhHhhhhhhccchhh---------hhHHHHHhhhhHHHHHHHHHccCC-CcchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66667766666655441 234555566666655555532110 000 012345556666666666666666
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 004470 418 LFHEMLGRGLEPDEIVYTALIDGYCKAGGMKKAFSLHNNMVHMRLTPNVVTYTALADGLCKSGELETANELLHEMCRKGL 497 (751)
Q Consensus 418 ~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~ 497 (751)
.|..--. ....+.++.+...+++-..+...+. -+....-.+.+++.+.|.-++|.+.+-+-. .
T Consensus 818 yY~~~~~---------~e~~~ecly~le~f~~LE~la~~Lp-----e~s~llp~~a~mf~svGMC~qAV~a~Lr~s---~ 880 (1189)
T KOG2041|consen 818 YYSYCGD---------TENQIECLYRLELFGELEVLARTLP-----EDSELLPVMADMFTSVGMCDQAVEAYLRRS---L 880 (1189)
T ss_pred HHHhccc---------hHhHHHHHHHHHhhhhHHHHHHhcC-----cccchHHHHHHHHHhhchHHHHHHHHHhcc---C
Confidence 5544211 1123444444444444433333322 244445556666666666666665553321 1
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 004470 498 QLNIYTYNSIVNGLCKAGNILQAVKLMED 526 (751)
Q Consensus 498 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 526 (751)
+ ...+..|...+++.+|.++-+.
T Consensus 881 p------kaAv~tCv~LnQW~~avelaq~ 903 (1189)
T KOG2041|consen 881 P------KAAVHTCVELNQWGEAVELAQR 903 (1189)
T ss_pred c------HHHHHHHHHHHHHHHHHHHHHh
Confidence 1 1224445555556555555444
No 158
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=97.65 E-value=0.00067 Score=59.41 Aligned_cols=97 Identities=12% Similarity=0.062 Sum_probs=82.9
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHhCCCccCHHhHHHHHHHHHhCCCCHHHHHHHHHhchhcCCCcCHHHHHHHHHH
Q 004470 186 HVFDIFFQVLVEARKLNEARKLFEKLLNYGLVISVDSCNLFLSRLSNTCDGLRMVVKSFTEFPELGICWNTASYNIMIHC 265 (751)
Q Consensus 186 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 265 (751)
.....++..+...|++++|..+|+.+... .|....+-.-|+.+.+..|++++|+..|..+...++. |+..+-.+..+
T Consensus 36 ~~lY~~A~~ly~~G~l~~A~~~f~~L~~~--Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~d-dp~~~~~ag~c 112 (157)
T PRK15363 36 NTLYRYAMQLMEVKEFAGAARLFQLLTIY--DAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKID-APQAPWAAAEC 112 (157)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CchHHHHHHHH
Confidence 34567788889999999999999999887 7888888888888888889999999999999888865 88888888889
Q ss_pred HHhcCCHHHHHHHHHHHHhc
Q 004470 266 LCRFGKIKEAHLLLLQMELR 285 (751)
Q Consensus 266 ~~~~g~~~~A~~~~~~m~~~ 285 (751)
+.+.|+.+.|.+-|+.....
T Consensus 113 ~L~lG~~~~A~~aF~~Ai~~ 132 (157)
T PRK15363 113 YLACDNVCYAIKALKAVVRI 132 (157)
T ss_pred HHHcCCHHHHHHHHHHHHHH
Confidence 99999999999999876653
No 159
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.63 E-value=0.00098 Score=53.97 Aligned_cols=95 Identities=18% Similarity=0.120 Sum_probs=64.6
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 004470 609 YNPLIKQHCLRNDMRTTAKIYKGMCAQGITPDGNTYNILLQGHCKARNMKEAWFLHKEMVQKGFNLTTSSYNALIKGFLK 688 (751)
Q Consensus 609 ~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 688 (751)
+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|.+.+++.....+. +..++..++..+..
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 80 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELD-PDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPD-NAKAYYNLGLAYYK 80 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCc-chhHHHHHHHHHHH
Confidence 3445556666777777777777776642 223455666777777777788888887777766433 44567777777777
Q ss_pred cCCHHHHHHHHHHHHHC
Q 004470 689 RKKYLEARELFEEMRRG 705 (751)
Q Consensus 689 ~g~~~~A~~~~~~~~~~ 705 (751)
.|++++|...++...+.
T Consensus 81 ~~~~~~a~~~~~~~~~~ 97 (100)
T cd00189 81 LGKYEEALEAYEKALEL 97 (100)
T ss_pred HHhHHHHHHHHHHHHcc
Confidence 78888888777777653
No 160
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.63 E-value=0.00055 Score=71.12 Aligned_cols=100 Identities=11% Similarity=0.019 Sum_probs=72.0
Q ss_pred hcCChHHHHHHHHhhhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHcCCCCCchhhhHHHHHHHHHhhhcCCCChh
Q 004470 107 IRSDYRLVLDFFDWACLRREPILEARCIVVQISVAAKDLKTAHGLIHDFWAKPNLDASIAFTHFVERLIYTYKDWGSDPH 186 (751)
Q Consensus 107 ~~~~~~~al~~f~~~~~~~~~~~~~~~~~~~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 186 (751)
..++.+.|+..|+.+....|.+..++..++..+...|++++|...+++++... |.++.
T Consensus 14 ~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~----------------------P~~~~ 71 (356)
T PLN03088 14 VDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELD----------------------PSLAK 71 (356)
T ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC----------------------cCCHH
Confidence 35677778888888777777777777777777777788888887777777654 55666
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhCCCccCHHhHHHHHHHH
Q 004470 187 VFDIFFQVLVEARKLNEARKLFEKLLNYGLVISVDSCNLFLSRL 230 (751)
Q Consensus 187 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~l 230 (751)
+|..++.+|...|++++|+..|+++++. .|+.......+..+
T Consensus 72 a~~~lg~~~~~lg~~~eA~~~~~~al~l--~P~~~~~~~~l~~~ 113 (356)
T PLN03088 72 AYLRKGTACMKLEEYQTAKAALEKGASL--APGDSRFTKLIKEC 113 (356)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHH
Confidence 7777777888888888888888877776 45555444444433
No 161
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.63 E-value=0.0017 Score=59.86 Aligned_cols=85 Identities=9% Similarity=-0.026 Sum_probs=44.8
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 004470 608 TYNPLIKQHCLRNDMRTTAKIYKGMCAQGITPD--GNTYNILLQGHCKARNMKEAWFLHKEMVQKGFNLTTSSYNALIKG 685 (751)
Q Consensus 608 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~ 685 (751)
.+..+...+...|++++|...|++.++.+..+. ...+..+...+.+.|++++|+..++++++..+. +...+..++..
T Consensus 37 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~ 115 (172)
T PRK02603 37 VYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPK-QPSALNNIAVI 115 (172)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHH
Confidence 344555555556666666666666654322111 234555555566666666666666666554332 34455555555
Q ss_pred HHhcCCHH
Q 004470 686 FLKRKKYL 693 (751)
Q Consensus 686 ~~~~g~~~ 693 (751)
+...|+..
T Consensus 116 ~~~~g~~~ 123 (172)
T PRK02603 116 YHKRGEKA 123 (172)
T ss_pred HHHcCChH
Confidence 55554433
No 162
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.62 E-value=0.0055 Score=61.65 Aligned_cols=28 Identities=14% Similarity=0.264 Sum_probs=20.0
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHh
Q 004470 186 HVFDIFFQVLVEARKLNEARKLFEKLLN 213 (751)
Q Consensus 186 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 213 (751)
..|.-.+..|-..|++++|.+.|.++..
T Consensus 36 ~~y~~Aa~~fk~~~~~~~A~~ay~kAa~ 63 (282)
T PF14938_consen 36 DLYEKAANCFKLAKDWEKAAEAYEKAAD 63 (282)
T ss_dssp HHHHHHHHHHHHTT-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccchhHHHHHHHHH
Confidence 3566677777888888888888887754
No 163
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.61 E-value=0.00045 Score=66.23 Aligned_cols=100 Identities=16% Similarity=0.096 Sum_probs=83.5
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 004470 613 IKQHCLRNDMRTTAKIYKGMCAQGITPDGNTYNILLQGHCKARNMKEAWFLHKEMVQKGFNLTTSSYNALIKGFLKRKKY 692 (751)
Q Consensus 613 ~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~ 692 (751)
..-+.+.+++++|+..|.++++.. +-|.+.|..-..+|++.|.++.|++-.+..+..++. ...+|..|..+|...|++
T Consensus 88 GN~~m~~~~Y~eAv~kY~~AI~l~-P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~-yskay~RLG~A~~~~gk~ 165 (304)
T KOG0553|consen 88 GNKLMKNKDYQEAVDKYTEAIELD-PTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPH-YSKAYGRLGLAYLALGKY 165 (304)
T ss_pred HHHHHHhhhHHHHHHHHHHHHhcC-CCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChH-HHHHHHHHHHHHHccCcH
Confidence 444678899999999999999853 236778888899999999999999999999887544 456999999999999999
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHH
Q 004470 693 LEARELFEEMRRGGLVADREIYYF 716 (751)
Q Consensus 693 ~~A~~~~~~~~~~~~~~~~~~~~~ 716 (751)
++|++.|++.++. .|+-.+|..
T Consensus 166 ~~A~~aykKaLel--dP~Ne~~K~ 187 (304)
T KOG0553|consen 166 EEAIEAYKKALEL--DPDNESYKS 187 (304)
T ss_pred HHHHHHHHhhhcc--CCCcHHHHH
Confidence 9999999999984 677666653
No 164
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=97.61 E-value=0.0017 Score=64.53 Aligned_cols=132 Identities=16% Similarity=0.082 Sum_probs=80.5
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHH----cCCC-CCHhhHHHHHHHHHHcCCHHHHHHHHHHHHH----CCC-CCCHH
Q 004470 573 TFNVLMNGFCMSGMIEDGEKLLKWMLE----KGLK-PNAATYNPLIKQHCLRNDMRTTAKIYKGMCA----QGI-TPDGN 642 (751)
Q Consensus 573 ~~~~li~~~~~~g~~~~A~~l~~~~~~----~g~~-p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~----~g~-~p~~~ 642 (751)
.|..|.+.|.-.|+++.|+...+.-++ -|-+ .....+..+..++.-.|+++.|.+.|+.... .|- .....
T Consensus 197 a~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQ 276 (639)
T KOG1130|consen 197 AYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQ 276 (639)
T ss_pred hhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHH
Confidence 455555555566677776665543322 1211 1123456667777777777777777766543 221 12344
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHC-----CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004470 643 TYNILLQGHCKARNMKEAWFLHKEMVQK-----GFNLTTSSYNALIKGFLKRKKYLEARELFEEMRR 704 (751)
Q Consensus 643 ~~~~li~~~~~~g~~~~A~~~~~~~~~~-----~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 704 (751)
+...|...|.-..++++|+.++.+-+.. +..-....+.+|..++...|..+.|+.+.+..++
T Consensus 277 scYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~ 343 (639)
T KOG1130|consen 277 SCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLR 343 (639)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 5556777777777888888777654331 1111345778888888888888888888777665
No 165
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.59 E-value=0.00042 Score=66.45 Aligned_cols=100 Identities=13% Similarity=0.018 Sum_probs=81.1
Q ss_pred cCChHHHHHHHHhhhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHcCCCCCchhhhHHHHHHHHHhhhcCCCChhh
Q 004470 108 RSDYRLVLDFFDWACLRREPILEARCIVVQISVAAKDLKTAHGLIHDFWAKPNLDASIAFTHFVERLIYTYKDWGSDPHV 187 (751)
Q Consensus 108 ~~~~~~al~~f~~~~~~~~~~~~~~~~~~~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 187 (751)
.++.+.|+..+..|....|.+..-||..+..+.+.|.++.|..-.+.+++.+ |....+
T Consensus 94 ~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iD----------------------p~yska 151 (304)
T KOG0553|consen 94 NKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSID----------------------PHYSKA 151 (304)
T ss_pred hhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcC----------------------hHHHHH
Confidence 3467888888888888888888888999999999999999988888888765 455678
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhCCCccCHHhHHHHHHHHH
Q 004470 188 FDIFFQVLVEARKLNEARKLFEKLLNYGLVISVDSCNLFLSRLS 231 (751)
Q Consensus 188 ~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~l~ 231 (751)
|..|+.+|...|++++|++.|+++++. .|+..+|-.-|...-
T Consensus 152 y~RLG~A~~~~gk~~~A~~aykKaLel--dP~Ne~~K~nL~~Ae 193 (304)
T KOG0553|consen 152 YGRLGLAYLALGKYEEAIEAYKKALEL--DPDNESYKSNLKIAE 193 (304)
T ss_pred HHHHHHHHHccCcHHHHHHHHHhhhcc--CCCcHHHHHHHHHHH
Confidence 888999999999999999999988876 788777665555443
No 166
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.59 E-value=6.9e-05 Score=46.39 Aligned_cols=29 Identities=34% Similarity=0.667 Sum_probs=16.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 004470 258 SYNIMIHCLCRFGKIKEAHLLLLQMELRG 286 (751)
Q Consensus 258 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g 286 (751)
+||.++++|++.|++++|.++|++|.+.|
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g 30 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERG 30 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence 45555555555555555555555555544
No 167
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.58 E-value=0.00013 Score=58.13 Aligned_cols=81 Identities=21% Similarity=0.197 Sum_probs=49.0
Q ss_pred cCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 004470 619 RNDMRTTAKIYKGMCAQGIT-PDGNTYNILLQGHCKARNMKEAWFLHKEMVQKGFNLTTSSYNALIKGFLKRKKYLEARE 697 (751)
Q Consensus 619 ~g~~~~A~~~~~~m~~~g~~-p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~ 697 (751)
.|+++.|+.+++++.+.... ++...+..+..+|.+.|++++|+.++++ .+.+.. +......++.+|.+.|++++|++
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~-~~~~~~l~a~~~~~l~~y~eAi~ 79 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPS-NPDIHYLLARCLLKLGKYEEAIK 79 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHC-HHHHHHHHHHHHHHTT-HHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCC-CHHHHHHHHHHHHHhCCHHHHHH
Confidence 46677777777777764321 1334444567777777777777777776 322222 33444455777777777777777
Q ss_pred HHHH
Q 004470 698 LFEE 701 (751)
Q Consensus 698 ~~~~ 701 (751)
.+++
T Consensus 80 ~l~~ 83 (84)
T PF12895_consen 80 ALEK 83 (84)
T ss_dssp HHHH
T ss_pred HHhc
Confidence 7765
No 168
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.58 E-value=0.00032 Score=53.29 Aligned_cols=65 Identities=22% Similarity=0.270 Sum_probs=46.3
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC-ChhHHHHHHHHHHHc
Q 004470 675 TTSSYNALIKGFLKRKKYLEARELFEEMRRGGLVADREIYYFFVDINFEEG-NTEITLELCDAAIEC 740 (751)
Q Consensus 675 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~ 740 (751)
++.+|..++..+...|++++|+..|+++++.+ +.+...+..++.++.+.| ++++|++.++++++.
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~-p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l 67 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELD-PNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKL 67 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHS-TTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHc
Confidence 45667777777777777777777777777754 446667777777777777 577777777777664
No 169
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.57 E-value=0.046 Score=53.34 Aligned_cols=58 Identities=14% Similarity=0.126 Sum_probs=44.9
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHC--CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 004470 681 ALIKGFLKRKKYLEARELFEEMRRG--GLVADREIYYFFVDINFEEGNTEITLELCDAAI 738 (751)
Q Consensus 681 ~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 738 (751)
.++.-|.+.|.+..|..-++.+++. +.+...+....++.+|...|..++|.+....+.
T Consensus 180 ~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~ 239 (243)
T PRK10866 180 SVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIA 239 (243)
T ss_pred HHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence 5667788899999999999998873 333355677788889999999999988776553
No 170
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=97.55 E-value=0.001 Score=65.34 Aligned_cols=103 Identities=15% Similarity=0.059 Sum_probs=69.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC--CCCCHHHHHHHH
Q 004470 643 TYNILLQGHCKARNMKEAWFLHKEMVQKGFNLT--TSSYNALIKGFLKRKKYLEARELFEEMRRGG--LVADREIYYFFV 718 (751)
Q Consensus 643 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~l~ 718 (751)
.|...+..+.+.|++++|+..|+.+++..+... +..+..++..|...|++++|...|+.+++.- -+.....+..++
T Consensus 145 ~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg 224 (263)
T PRK10803 145 DYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVG 224 (263)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHH
Confidence 344444444566788888888888877644321 3466677788888888888888888877631 122345566667
Q ss_pred HHHHhcCChhHHHHHHHHHHHcCCCCC
Q 004470 719 DINFEEGNTEITLELCDAAIECYLVGK 745 (751)
Q Consensus 719 ~~~~~~g~~~~A~~~~~~~~~~~~~~~ 745 (751)
.++.+.|++++|++.++++++.+....
T Consensus 225 ~~~~~~g~~~~A~~~~~~vi~~yP~s~ 251 (263)
T PRK10803 225 VIMQDKGDTAKAKAVYQQVIKKYPGTD 251 (263)
T ss_pred HHHHHcCCHHHHHHHHHHHHHHCcCCH
Confidence 777778888888888888887776544
No 171
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.54 E-value=0.0016 Score=67.62 Aligned_cols=122 Identities=20% Similarity=0.207 Sum_probs=84.6
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC--CCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 004470 288 SPDVVSFSTIINGYCYLGELQRVLKLIEEMQIK--GLKPNPYTYNSVVRLLCKTSKVVEAETILREMMNQGIVPDNVIYT 365 (751)
Q Consensus 288 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~ 365 (751)
..+......+++.+....+++.+..++-+.... ....-..|..++++.|.+.|..+++..++..=...|+-||..++|
T Consensus 63 ~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n 142 (429)
T PF10037_consen 63 PVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFN 142 (429)
T ss_pred CCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHH
Confidence 345566666677766667777777777777654 222335566677888888888888888877777778778888888
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 004470 366 TLIDGFCKMGNVAAAYRLFDEMRGLNIIPDLLTYTAIICGFCLT 409 (751)
Q Consensus 366 ~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~ 409 (751)
.||+.+.+.|++..|.++..+|...+...+..|+..-+.++.+-
T Consensus 143 ~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 143 LLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 88888888888888888777776665555556655555555443
No 172
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.53 E-value=0.00037 Score=52.21 Aligned_cols=58 Identities=14% Similarity=0.250 Sum_probs=41.4
Q ss_pred HHHHHHhcCChHHHHHHHHHHHcCCCCCchhhhHHHHHHHHHhhhcCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 004470 135 VVQISVAAKDLKTAHGLIHDFWAKPNLDASIAFTHFVERLIYTYKDWGSDPHVFDIFFQVLVEARKLNEARKLFEKLLNY 214 (751)
Q Consensus 135 ~~~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 214 (751)
++..+...|++++|...++++++.. |.++.++..++.++...|++++|...|+++++.
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~----------------------P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~ 60 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQD----------------------PDNPEAWYLLGRILYQQGRYDEALAYYERALEL 60 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCS----------------------TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHC----------------------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 4566667777777777777777665 556677777777777777777777777777665
No 173
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.51 E-value=0.003 Score=53.43 Aligned_cols=90 Identities=16% Similarity=0.032 Sum_probs=42.2
Q ss_pred HHHHHcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHhc
Q 004470 614 KQHCLRNDMRTTAKIYKGMCAQGITPD--GNTYNILLQGHCKARNMKEAWFLHKEMVQKGFNL--TTSSYNALIKGFLKR 689 (751)
Q Consensus 614 ~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~ 689 (751)
.++-..|+.++|+.+|++.+..|+... ...+-.+...+...|++++|..++++.....+.+ +......+.-++...
T Consensus 9 ~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~~~ 88 (120)
T PF12688_consen 9 WAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALYNL 88 (120)
T ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHHC
Confidence 344455555555555555555544332 2234444555555555555555555555432210 111222233344455
Q ss_pred CCHHHHHHHHHHHH
Q 004470 690 KKYLEARELFEEMR 703 (751)
Q Consensus 690 g~~~~A~~~~~~~~ 703 (751)
|+.++|++.+-..+
T Consensus 89 gr~~eAl~~~l~~l 102 (120)
T PF12688_consen 89 GRPKEALEWLLEAL 102 (120)
T ss_pred CCHHHHHHHHHHHH
Confidence 55555555554443
No 174
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.50 E-value=0.0028 Score=58.52 Aligned_cols=97 Identities=10% Similarity=-0.047 Sum_probs=72.1
Q ss_pred CChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCccC-HHhHHHHHHHHHhCCCCHHHHHHHHHhchhcCCCcCHHHHHH
Q 004470 183 SDPHVFDIFFQVLVEARKLNEARKLFEKLLNYGLVIS-VDSCNLFLSRLSNTCDGLRMVVKSFTEFPELGICWNTASYNI 261 (751)
Q Consensus 183 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~-~~~~~~ll~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 261 (751)
.....+..++..+...|++++|...|+++++.+..+. .......++.++...|++++|...++++.+..+. +...+..
T Consensus 33 ~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~ 111 (172)
T PRK02603 33 KEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPK-QPSALNN 111 (172)
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-cHHHHHH
Confidence 3456788899999999999999999999987643332 2344455666666789999999999999887554 5677777
Q ss_pred HHHHHHhcCCHHHHHHHHH
Q 004470 262 MIHCLCRFGKIKEAHLLLL 280 (751)
Q Consensus 262 li~~~~~~g~~~~A~~~~~ 280 (751)
+...+...|+...+..-++
T Consensus 112 lg~~~~~~g~~~~a~~~~~ 130 (172)
T PRK02603 112 IAVIYHKRGEKAEEAGDQD 130 (172)
T ss_pred HHHHHHHcCChHhHhhCHH
Confidence 8888888887655554433
No 175
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.50 E-value=0.027 Score=54.89 Aligned_cols=67 Identities=16% Similarity=0.015 Sum_probs=38.8
Q ss_pred hhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCccCHHhHH---HHHHHHHhCCCCHHHHHHHHHhchhcCCC
Q 004470 185 PHVFDIFFQVLVEARKLNEARKLFEKLLNYGLVISVDSCN---LFLSRLSNTCDGLRMVVKSFTEFPELGIC 253 (751)
Q Consensus 185 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~---~ll~~l~~~~~~~~~a~~~~~~~~~~~~~ 253 (751)
+..+...+..+.+.|++++|.+.|+++... .|+..... ..++..+.+.+++++|...|+++++..|.
T Consensus 32 ~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~--yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~ 101 (243)
T PRK10866 32 PSEIYATAQQKLQDGNWKQAITQLEALDNR--YPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPT 101 (243)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcC
Confidence 344555666677777777777777777765 34332221 22333333556666666666666665444
No 176
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=97.49 E-value=0.0026 Score=61.62 Aligned_cols=114 Identities=11% Similarity=0.019 Sum_probs=87.9
Q ss_pred CCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCccCHHhHH-HHHHHHHhCC--CCHHHHHHHHHhchhcCCCcCHHH
Q 004470 182 GSDPHVFDIFFQVLVEARKLNEARKLFEKLLNYGLVISVDSCN-LFLSRLSNTC--DGLRMVVKSFTEFPELGICWNTAS 258 (751)
Q Consensus 182 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~-~ll~~l~~~~--~~~~~a~~~~~~~~~~~~~~~~~~ 258 (751)
|.++.-|.+|+.+|...|+++.|..-|.++.+. .|++...- .+...++... ....++...|+++...++. |+.+
T Consensus 153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL--~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~-~ira 229 (287)
T COG4235 153 PGDAEGWDLLGRAYMALGRASDALLAYRNALRL--AGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPA-NIRA 229 (287)
T ss_pred CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCc-cHHH
Confidence 788889999999999999999999999999886 45544333 3333444333 3456899999999998766 8888
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHH
Q 004470 259 YNIMIHCLCRFGKIKEAHLLLLQMELRGCSPDVVSFSTIING 300 (751)
Q Consensus 259 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~ 300 (751)
...|...+...|++.+|...|+.|.+.. |....+..+|..
T Consensus 230 l~lLA~~afe~g~~~~A~~~Wq~lL~~l--p~~~~rr~~ie~ 269 (287)
T COG4235 230 LSLLAFAAFEQGDYAEAAAAWQMLLDLL--PADDPRRSLIER 269 (287)
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHhcC--CCCCchHHHHHH
Confidence 8889999999999999999999999864 333445566554
No 177
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.49 E-value=0.0017 Score=67.56 Aligned_cols=121 Identities=15% Similarity=0.137 Sum_probs=65.5
Q ss_pred CCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHH
Q 004470 428 EPDEIVYTALIDGYCKAGGMKKAFSLHNNMVHMR--LTPNVVTYTALADGLCKSGELETANELLHEMCRKGLQLNIYTYN 505 (751)
Q Consensus 428 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~~~ 505 (751)
+.+......+++.+....+++.+..++.+..... ...-..|..++++.|.+.|..++++++++.=...|+-||..++|
T Consensus 63 ~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n 142 (429)
T PF10037_consen 63 PVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFN 142 (429)
T ss_pred CCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHH
Confidence 4455555555555555555555655555554431 11112233456666666666666666666555556666666666
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q 004470 506 SIVNGLCKAGNILQAVKLMEDMEVAGFHPDTFTYTTIMDAYCK 548 (751)
Q Consensus 506 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~ 548 (751)
.|++.+.+.|++..|.++...|...+...+..++...+.+|.+
T Consensus 143 ~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~ 185 (429)
T PF10037_consen 143 LLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYK 185 (429)
T ss_pred HHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHH
Confidence 6666666666666666666665555544444554444444443
No 178
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.49 E-value=0.00011 Score=45.46 Aligned_cols=29 Identities=31% Similarity=0.948 Sum_probs=17.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 004470 293 SFSTIINGYCYLGELQRVLKLIEEMQIKG 321 (751)
Q Consensus 293 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g 321 (751)
+||++|++|++.|++++|.++|++|.+.|
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g 30 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERG 30 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence 45666666666666666666666665554
No 179
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.49 E-value=0.033 Score=49.62 Aligned_cols=132 Identities=11% Similarity=0.058 Sum_probs=79.7
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCC---CCCCHHHH
Q 004470 568 QPSVVTFNVLMNGFCMSGMIEDGEKLLKWMLEKGLKPNAATYNPLIKQHCLRNDMRTTAKIYKGMCAQG---ITPDGNTY 644 (751)
Q Consensus 568 ~p~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g---~~p~~~~~ 644 (751)
-|++..-..|..++.+.|+..+|...|++...--..-|......+.++....++...|...++++.+.. -.|| +.
T Consensus 86 ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd--~~ 163 (251)
T COG4700 86 APTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPD--GH 163 (251)
T ss_pred chhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCC--ch
Confidence 556666666677777777777777777776654344566666666666677777777777777666632 1222 23
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 004470 645 NILLQGHCKARNMKEAWFLHKEMVQKGFNLTTSSYNALIKGFLKRKKYLEARELFEEMR 703 (751)
Q Consensus 645 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 703 (751)
-.+.+.|...|++.+|..-|+.+++.- |++..-......+.++|+.++|..-+....
T Consensus 164 Ll~aR~laa~g~~a~Aesafe~a~~~y--pg~~ar~~Y~e~La~qgr~~ea~aq~~~v~ 220 (251)
T COG4700 164 LLFARTLAAQGKYADAESAFEVAISYY--PGPQARIYYAEMLAKQGRLREANAQYVAVV 220 (251)
T ss_pred HHHHHHHHhcCCchhHHHHHHHHHHhC--CCHHHHHHHHHHHHHhcchhHHHHHHHHHH
Confidence 345566667777777777777766643 344333334445566666666555444443
No 180
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.49 E-value=0.0022 Score=58.95 Aligned_cols=94 Identities=11% Similarity=-0.018 Sum_probs=49.6
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 004470 608 TYNPLIKQHCLRNDMRTTAKIYKGMCAQGITP--DGNTYNILLQGHCKARNMKEAWFLHKEMVQKGFNLTTSSYNALIKG 685 (751)
Q Consensus 608 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p--~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~ 685 (751)
.|..+...+...|++++|...|++.+.....+ ...++..+...+...|++++|+..++++.+..+. ....+..++..
T Consensus 37 ~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~-~~~~~~~la~i 115 (168)
T CHL00033 37 TYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPF-LPQALNNMAVI 115 (168)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHH
Confidence 34444445555566666666666665432111 1235556666666666666666666666654322 33445555555
Q ss_pred HH-------hcCCHHHHHHHHHHH
Q 004470 686 FL-------KRKKYLEARELFEEM 702 (751)
Q Consensus 686 ~~-------~~g~~~~A~~~~~~~ 702 (751)
+. ..|++++|...+++.
T Consensus 116 ~~~~~~~~~~~g~~~~A~~~~~~a 139 (168)
T CHL00033 116 CHYRGEQAIEQGDSEIAEAWFDQA 139 (168)
T ss_pred HHHhhHHHHHcccHHHHHHHHHHH
Confidence 54 556666554444443
No 181
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.48 E-value=0.0023 Score=58.89 Aligned_cols=99 Identities=15% Similarity=-0.013 Sum_probs=78.4
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 004470 641 GNTYNILLQGHCKARNMKEAWFLHKEMVQKGFNL--TTSSYNALIKGFLKRKKYLEARELFEEMRRGGLVADREIYYFFV 718 (751)
Q Consensus 641 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 718 (751)
...|..++..+...|++++|+..|++++.....+ ...++..++..+...|++++|+..++++++.. +.....+..++
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~-~~~~~~~~~la 113 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERN-PFLPQALNNMA 113 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCcHHHHHHHH
Confidence 4557777888889999999999999998764333 23588999999999999999999999999853 44456666666
Q ss_pred HHHH-------hcCChhHHHHHHHHHHHc
Q 004470 719 DINF-------EEGNTEITLELCDAAIEC 740 (751)
Q Consensus 719 ~~~~-------~~g~~~~A~~~~~~~~~~ 740 (751)
..+. +.|++++|...++++++.
T Consensus 114 ~i~~~~~~~~~~~g~~~~A~~~~~~a~~~ 142 (168)
T CHL00033 114 VICHYRGEQAIEQGDSEIAEAWFDQAAEY 142 (168)
T ss_pred HHHHHhhHHHHHcccHHHHHHHHHHHHHH
Confidence 6666 888999887777776554
No 182
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.48 E-value=0.00048 Score=51.56 Aligned_cols=59 Identities=22% Similarity=0.384 Sum_probs=36.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcC
Q 004470 682 LIKGFLKRKKYLEARELFEEMRRGGLVADREIYYFFVDINFEEGNTEITLELCDAAIECY 741 (751)
Q Consensus 682 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 741 (751)
++..+.+.|++++|++.|+++++.. +-+...+..++.++.+.|++++|..+++++++..
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~ 61 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQD-PDNPEAWYLLGRILYQQGRYDEALAYYERALELD 61 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCS-TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 3455566666666666666666653 3455666666666666666666666666666554
No 183
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.48 E-value=0.0052 Score=51.96 Aligned_cols=113 Identities=18% Similarity=0.077 Sum_probs=76.8
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHhCCCccCHH-hHHHHHHHHHhCCCCHHHHHHHHHhchhcCCC--cCHHHHHHH
Q 004470 186 HVFDIFFQVLVEARKLNEARKLFEKLLNYGLVISVD-SCNLFLSRLSNTCDGLRMVVKSFTEFPELGIC--WNTASYNIM 262 (751)
Q Consensus 186 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~-~~~~ll~~l~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l 262 (751)
.+...++.++-..|+.++|+.+|++.+..|...... -....++..+...|++++|..++++.....+. .+......+
T Consensus 2 ~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~ 81 (120)
T PF12688_consen 2 RALYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFL 81 (120)
T ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHH
Confidence 345667888899999999999999999988665432 23344555556778999999998888765332 122333344
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH
Q 004470 263 IHCLCRFGKIKEAHLLLLQMELRGCSPDVVSFSTIINGYC 302 (751)
Q Consensus 263 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~ 302 (751)
..++...|+.++|++.+-.... ++...|.--|..|.
T Consensus 82 Al~L~~~gr~~eAl~~~l~~la----~~~~~y~ra~~~ya 117 (120)
T PF12688_consen 82 ALALYNLGRPKEALEWLLEALA----ETLPRYRRAIRFYA 117 (120)
T ss_pred HHHHHHCCCHHHHHHHHHHHHH----HHHHHHHHHHHHHH
Confidence 5577788888888888766554 34445555555554
No 184
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.47 E-value=0.00034 Score=52.95 Aligned_cols=65 Identities=18% Similarity=0.251 Sum_probs=48.7
Q ss_pred HhcCChHHHHHHHHHHHcCCCCCchhhhHHHHHHHHHhhhcCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCccC
Q 004470 140 VAAKDLKTAHGLIHDFWAKPNLDASIAFTHFVERLIYTYKDWGSDPHVFDIFFQVLVEARKLNEARKLFEKLLNYGLVIS 219 (751)
Q Consensus 140 ~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~ 219 (751)
...|++++|..++++++... |.++.+...|+.+|.+.|++++|..+++++... .|+
T Consensus 2 l~~~~~~~A~~~~~~~l~~~----------------------p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~--~~~ 57 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRN----------------------PDNPEARLLLAQCYLKQGQYDEAEELLERLLKQ--DPD 57 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHT----------------------TTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG--GTT
T ss_pred hhccCHHHHHHHHHHHHHHC----------------------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CcC
Confidence 45788888888888877654 677778888888888888888888888888877 666
Q ss_pred HHhHHHHHH
Q 004470 220 VDSCNLFLS 228 (751)
Q Consensus 220 ~~~~~~ll~ 228 (751)
...+..++.
T Consensus 58 ~~~~~~l~a 66 (68)
T PF14559_consen 58 NPEYQQLLA 66 (68)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 655555544
No 185
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.44 E-value=0.015 Score=63.25 Aligned_cols=71 Identities=13% Similarity=0.039 Sum_probs=48.2
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH
Q 004470 640 DGNTYNILLQGHCKARNMKEAWFLHKEMVQKGFNLTTSSYNALIKGFLKRKKYLEARELFEEMRRGGLVADREIY 714 (751)
Q Consensus 640 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 714 (751)
+...|..+.-.....|++++|...++++++.+ |+...|..++..+...|+.++|.+.++++... .|...+|
T Consensus 419 ~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~--ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L--~P~~pt~ 489 (517)
T PRK10153 419 LPRIYEILAVQALVKGKTDEAYQAINKAIDLE--MSWLNYVLLGKVYELKGDNRLAADAYSTAFNL--RPGENTL 489 (517)
T ss_pred ChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCCchH
Confidence 44566666555556677777777777777764 46667777777777777777777777777764 3443344
No 186
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.42 E-value=0.0017 Score=52.63 Aligned_cols=75 Identities=21% Similarity=0.295 Sum_probs=42.4
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCC-CCCHHHHHHHHHHHHhcC--------CHHHHHHHHHHHHHCCCCCCcccHHHH
Q 004470 262 MIHCLCRFGKIKEAHLLLLQMELRGC-SPDVVSFSTIINGYCYLG--------ELQRVLKLIEEMQIKGLKPNPYTYNSV 332 (751)
Q Consensus 262 li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~~~~~~li~~~~~~g--------~~~~A~~~~~~m~~~g~~p~~~~~~~l 332 (751)
.|..+...|++.....+|+.+++.|+ .|++.+|+.++.+.++.. ++-+.+.+++.|...+++|+..||+.+
T Consensus 31 ~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYniv 110 (120)
T PF08579_consen 31 NINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYNIV 110 (120)
T ss_pred HHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHHHH
Confidence 44455555777777777777777777 677777777777666542 122333444444444444444444444
Q ss_pred HHHH
Q 004470 333 VRLL 336 (751)
Q Consensus 333 i~~~ 336 (751)
+..+
T Consensus 111 l~~L 114 (120)
T PF08579_consen 111 LGSL 114 (120)
T ss_pred HHHH
Confidence 4433
No 187
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=97.41 E-value=0.0098 Score=57.71 Aligned_cols=125 Identities=12% Similarity=-0.043 Sum_probs=93.6
Q ss_pred HHHHHHHHhCCCccCHHhHHHHHHHHHhCCCCHHHHHHHHHhchhcCCCcCHHHHHHHHHHHHhcC---CHHHHHHHHHH
Q 004470 205 RKLFEKLLNYGLVISVDSCNLFLSRLSNTCDGLRMVVKSFTEFPELGICWNTASYNIMIHCLCRFG---KIKEAHLLLLQ 281 (751)
Q Consensus 205 ~~~~~~~~~~g~~p~~~~~~~ll~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g---~~~~A~~~~~~ 281 (751)
..-++.-+.. .|+..--=.+|+..+...|+.+.|...|.++.+..++ |+..+..+..++.... ...++..+|++
T Consensus 142 ~a~Le~~L~~--nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~-n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~ 218 (287)
T COG4235 142 IARLETHLQQ--NPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGD-NPEILLGLAEALYYQAGQQMTAKARALLRQ 218 (287)
T ss_pred HHHHHHHHHh--CCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCCcccHHHHHHHHH
Confidence 3334444444 4655544456666666899999999999999998655 8888888888776543 45688999999
Q ss_pred HHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHH
Q 004470 282 MELRGCSPDVVSFSTIINGYCYLGELQRVLKLIEEMQIKGLKPNPYTYNSVVRL 335 (751)
Q Consensus 282 m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~ 335 (751)
+...+. -|+.+...|...+...|++.+|...++.|.+.. |....+..+|..
T Consensus 219 al~~D~-~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~l--p~~~~rr~~ie~ 269 (287)
T COG4235 219 ALALDP-ANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLL--PADDPRRSLIER 269 (287)
T ss_pred HHhcCC-ccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcC--CCCCchHHHHHH
Confidence 988654 578888888899999999999999999999873 344445555543
No 188
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=97.38 E-value=0.19 Score=50.33 Aligned_cols=321 Identities=15% Similarity=0.078 Sum_probs=188.7
Q ss_pred HHHHHHhhcCChHHHHHHHHhhhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHcCCCCCchhhhHHHHHHHHHhhh
Q 004470 100 LIWVLMDIRSDYRLVLDFFDWACLRREPILEARCIVVQISVAAKDLKTAHGLIHDFWAKPNLDASIAFTHFVERLIYTYK 179 (751)
Q Consensus 100 ~~~~l~~~~~~~~~al~~f~~~~~~~~~~~~~~~~~~~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~ 179 (751)
+-|++..+-..|..+-++|.-...... .--..-+-+-...|+-..|++.-.+.-+.-..
T Consensus 58 lwwlv~~iw~sP~t~~Ryfr~rKRdrg---yqALStGliAagAGda~lARkmt~~~~~llss------------------ 116 (531)
T COG3898 58 LWWLVRSIWESPYTARRYFRERKRDRG---YQALSTGLIAAGAGDASLARKMTARASKLLSS------------------ 116 (531)
T ss_pred HHHHHHHHHhCcHHHHHHHHHHHhhhH---HHHHhhhhhhhccCchHHHHHHHHHHHhhhhc------------------
Confidence 456677778889999999985533211 11122344556678888888877664322100
Q ss_pred cCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCccCHHhHHHHHHHHH---hCCCCHHHHHHHHHhchhcCCCcCH
Q 004470 180 DWGSDPHVFDIFFQVLVEARKLNEARKLFEKLLNYGLVISVDSCNLFLSRLS---NTCDGLRMVVKSFTEFPELGICWNT 256 (751)
Q Consensus 180 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~l~---~~~~~~~~a~~~~~~~~~~~~~~~~ 256 (751)
...|-+..+=+++-.-.|++++|.+-|+-|+. .|... ..-|..++ +..|..+.|+.+-+++.+..+. -.
T Consensus 117 --DqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~---dPEtR--llGLRgLyleAqr~GareaAr~yAe~Aa~~Ap~-l~ 188 (531)
T COG3898 117 --DQEPLIHLLEAQAALLEGDYEDARKKFEAMLD---DPETR--LLGLRGLYLEAQRLGAREAARHYAERAAEKAPQ-LP 188 (531)
T ss_pred --cchHHHHHHHHHHHHhcCchHHHHHHHHHHhc---ChHHH--HHhHHHHHHHHHhcccHHHHHHHHHHHHhhccC-Cc
Confidence 11223334445566678999999999999987 35544 23344443 3568899999988888776544 56
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhcC-CCCCHHHH--HHHHHHHH---hcCCHHHHHHHHHHHHHCCCCCCcccH-
Q 004470 257 ASYNIMIHCLCRFGKIKEAHLLLLQMELRG-CSPDVVSF--STIINGYC---YLGELQRVLKLIEEMQIKGLKPNPYTY- 329 (751)
Q Consensus 257 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~~~--~~li~~~~---~~g~~~~A~~~~~~m~~~g~~p~~~~~- 329 (751)
..+..++...|..|+++.|+++++.-.... +.+++.-- ..|+.+-. -..+...|...-.+..+. .||..--
T Consensus 189 WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~KL--~pdlvPaa 266 (531)
T COG3898 189 WAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDALEANKL--APDLVPAA 266 (531)
T ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhc--CCccchHH
Confidence 788899999999999999999998865532 33443321 22222211 123444555555444443 4553332
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH---HHhCCCCCCHHHHHHHHHHH
Q 004470 330 NSVVRLLCKTSKVVEAETILREMMNQGIVPDNVIYTTLIDGFCKMGNVAAAYRLFDE---MRGLNIIPDLLTYTAIICGF 406 (751)
Q Consensus 330 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~---m~~~~~~p~~~~~~~li~~~ 406 (751)
..-.+.+.+.|+..++-.+++.+-+....|+. +. +..+.+.|+. ++.-++. +..... .+..+...+..+.
T Consensus 267 v~AAralf~d~~~rKg~~ilE~aWK~ePHP~i--a~--lY~~ar~gdt--a~dRlkRa~~L~slk~-nnaes~~~va~aA 339 (531)
T COG3898 267 VVAARALFRDGNLRKGSKILETAWKAEPHPDI--AL--LYVRARSGDT--ALDRLKRAKKLESLKP-NNAESSLAVAEAA 339 (531)
T ss_pred HHHHHHHHhccchhhhhhHHHHHHhcCCChHH--HH--HHHHhcCCCc--HHHHHHHHHHHHhcCc-cchHHHHHHHHHH
Confidence 23346677778888888888887776444433 22 2233455542 2222211 111111 1455555666666
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH-HcCChhHHHHHHHHHHhC
Q 004470 407 CLTGKMVEAEKLFHEMLGRGLEPDEIVYTALIDGYC-KAGGMKKAFSLHNNMVHM 460 (751)
Q Consensus 407 ~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~-~~g~~~~A~~~~~~~~~~ 460 (751)
...|++..|..--+..... .|....|..|.+.-. ..|+-.++...+.+.++.
T Consensus 340 lda~e~~~ARa~Aeaa~r~--~pres~~lLlAdIeeAetGDqg~vR~wlAqav~A 392 (531)
T COG3898 340 LDAGEFSAARAKAEAAARE--APRESAYLLLADIEEAETGDQGKVRQWLAQAVKA 392 (531)
T ss_pred HhccchHHHHHHHHHHhhh--CchhhHHHHHHHHHhhccCchHHHHHHHHHHhcC
Confidence 6777777666655555443 566666666655543 347777777777766654
No 189
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.37 E-value=0.013 Score=63.69 Aligned_cols=85 Identities=13% Similarity=0.047 Sum_probs=67.6
Q ss_pred HHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHH
Q 004470 657 MKEAWFLHKEMVQKG-FNLTTSSYNALIKGFLKRKKYLEARELFEEMRRGGLVADREIYYFFVDINFEEGNTEITLELCD 735 (751)
Q Consensus 657 ~~~A~~~~~~~~~~~-~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 735 (751)
+..+.+..++..... ...++..|..+.-.....|++++|...++++++.+ |+...|..++..+...|+.++|.+.++
T Consensus 400 l~~a~~~~~~a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~--ps~~a~~~lG~~~~~~G~~~eA~~~~~ 477 (517)
T PRK10153 400 LAALSTELDNIVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLE--MSWLNYVLLGKVYELKGDNRLAADAYS 477 (517)
T ss_pred HHHHHHHHHHhhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 344455555544431 23356788888777778899999999999999965 688899999999999999999999999
Q ss_pred HHHHcCCC
Q 004470 736 AAIECYLV 743 (751)
Q Consensus 736 ~~~~~~~~ 743 (751)
++++....
T Consensus 478 ~A~~L~P~ 485 (517)
T PRK10153 478 TAFNLRPG 485 (517)
T ss_pred HHHhcCCC
Confidence 99988765
No 190
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.34 E-value=0.0023 Score=51.91 Aligned_cols=80 Identities=18% Similarity=0.336 Sum_probs=54.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCCcccHHHHHHHHHhcC--------CHHHHHHHHHHHHHCCCCCCHHHH
Q 004470 294 FSTIINGYCYLGELQRVLKLIEEMQIKGL-KPNPYTYNSVVRLLCKTS--------KVVEAETILREMMNQGIVPDNVIY 364 (751)
Q Consensus 294 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~~~~~~li~~~~~~g--------~~~~A~~~~~~m~~~g~~p~~~~~ 364 (751)
-...|..+...+++.....+|+.+++.|+ .|++.+|+.++.+.++.. ++-+.+.++++|+..+++|+..+|
T Consensus 28 ~i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etY 107 (120)
T PF08579_consen 28 QIDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETY 107 (120)
T ss_pred HHHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHH
Confidence 34456666677888888888888888888 788888888887776543 233455666666666666666666
Q ss_pred HHHHHHHHH
Q 004470 365 TTLIDGFCK 373 (751)
Q Consensus 365 ~~li~~~~~ 373 (751)
+.++..+.+
T Consensus 108 nivl~~Llk 116 (120)
T PF08579_consen 108 NIVLGSLLK 116 (120)
T ss_pred HHHHHHHHH
Confidence 666665543
No 191
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=97.30 E-value=0.0049 Score=61.42 Aligned_cols=288 Identities=15% Similarity=0.115 Sum_probs=159.5
Q ss_pred HHHHHcCChhHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHH--HHHc--CCCC-CHHHHHHHHH
Q 004470 439 DGYCKAGGMKKAFSLHNNMVHMRLTPNV----VTYTALADGLCKSGELETANELLHE--MCRK--GLQL-NIYTYNSIVN 509 (751)
Q Consensus 439 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~li~~~~~~g~~~~A~~l~~~--m~~~--g~~~-~~~~~~~li~ 509 (751)
.-+|+.|+......+|+..++.|-. |. ..|..|.++|.-.+++++|+++... .... |-+. ....-..|.+
T Consensus 25 ERLck~gdcraGv~ff~aA~qvGTe-Dl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGN 103 (639)
T KOG1130|consen 25 ERLCKMGDCRAGVDFFKAALQVGTE-DLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGN 103 (639)
T ss_pred HHHHhccchhhhHHHHHHHHHhcch-HHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccccc
Confidence 4467888888888888888877633 33 3455566666666777777765432 1111 1000 1112223333
Q ss_pred HHHHcCCHHHHHHHHHHH----HHCCC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 004470 510 GLCKAGNILQAVKLMEDM----EVAGF-HPDTFTYTTIMDAYCKSGEMVKAHELLRDMLDKGLQPSVVTFNVLMNGFCMS 584 (751)
Q Consensus 510 ~~~~~g~~~~A~~~~~~~----~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~ 584 (751)
.+--.|.+++|+....+- .+.|- ......+..+...|...|+.-... .-.+.|-.++.++
T Consensus 104 tlKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~----~pee~g~f~~ev~----------- 168 (639)
T KOG1130|consen 104 TLKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLE----APEEKGAFNAEVT----------- 168 (639)
T ss_pred hhhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCC----ChhhcccccHHHH-----------
Confidence 344445555554433321 11110 011222333334443333211000 0001111111110
Q ss_pred CChhHHHHHHHHHHH----cCC-CCCHhhHHHHHHHHHHcCCHHHHHHHHHHHH----HCCCCC-CHHHHHHHHHHHHhc
Q 004470 585 GMIEDGEKLLKWMLE----KGL-KPNAATYNPLIKQHCLRNDMRTTAKIYKGMC----AQGITP-DGNTYNILLQGHCKA 654 (751)
Q Consensus 585 g~~~~A~~l~~~~~~----~g~-~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~----~~g~~p-~~~~~~~li~~~~~~ 654 (751)
..++.|.++|.+=++ .|- -.....|..|...|.-.|+++.|+...+.-+ +.|-.. ....+..+..++.-.
T Consensus 169 ~al~~Av~fy~eNL~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hifl 248 (639)
T KOG1130|consen 169 SALENAVKFYMENLELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFL 248 (639)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhh
Confidence 012233333332211 110 0112356667777788899999988766433 233221 345678889999999
Q ss_pred CCHHHHHHHHHHHHH----CC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-----CCCCCHHHHHHHHHHHHhc
Q 004470 655 RNMKEAWFLHKEMVQ----KG-FNLTTSSYNALIKGFLKRKKYLEARELFEEMRRG-----GLVADREIYYFFVDINFEE 724 (751)
Q Consensus 655 g~~~~A~~~~~~~~~----~~-~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~~~~~~~~~~l~~~~~~~ 724 (751)
|+++.|.+.|+.... .| -........+|.+.|.-..+++.|+.++.+-+.. +..-....|..|+.++-..
T Consensus 249 g~fe~A~ehYK~tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~al 328 (639)
T KOG1130|consen 249 GNFELAIEHYKLTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNAL 328 (639)
T ss_pred cccHhHHHHHHHHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhh
Confidence 999999999887543 22 2224556778999998888999999998875531 1123456788999999999
Q ss_pred CChhHHHHHHHHHHHcCC
Q 004470 725 GNTEITLELCDAAIECYL 742 (751)
Q Consensus 725 g~~~~A~~~~~~~~~~~~ 742 (751)
|..++|..+.+..++...
T Consensus 329 g~h~kAl~fae~hl~~s~ 346 (639)
T KOG1130|consen 329 GEHRKALYFAELHLRSSL 346 (639)
T ss_pred hhHHHHHHHHHHHHHHHH
Confidence 999999999988877653
No 192
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.29 E-value=0.0089 Score=60.12 Aligned_cols=166 Identities=15% Similarity=0.134 Sum_probs=89.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHHc---CCCCC--H
Q 004470 537 FTYTTIMDAYCKSGEMVKAHELLRDMLDK----GLQP-SVVTFNVLMNGFCMSGMIEDGEKLLKWMLEK---GLKPN--A 606 (751)
Q Consensus 537 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~----~~~p-~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~---g~~p~--~ 606 (751)
..|......|-..|++++|.+.|.+..+. +-+. -...|......|.+ +++++|.+.+++..+. .-.|+ .
T Consensus 36 ~~y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~-~~~~~Ai~~~~~A~~~y~~~G~~~~aA 114 (282)
T PF14938_consen 36 DLYEKAANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKK-GDPDEAIECYEKAIEIYREAGRFSQAA 114 (282)
T ss_dssp HHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHH-TTHHHHHHHHHHHHHHHHHCT-HHHHH
T ss_pred HHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh-hCHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 45667777777788888888888776432 1111 12234444444433 4777887777776642 11222 2
Q ss_pred hhHHHHHHHHHHc-CCHHHHHHHHHHHHHC----CCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-----
Q 004470 607 ATYNPLIKQHCLR-NDMRTTAKIYKGMCAQ----GITPD--GNTYNILLQGHCKARNMKEAWFLHKEMVQKGFNL----- 674 (751)
Q Consensus 607 ~~~~~l~~~~~~~-g~~~~A~~~~~~m~~~----g~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p----- 674 (751)
..+..+...|-.. |++++|.+.|++..+. | .+. ..++..++..+.+.|++++|+++|++........
T Consensus 115 ~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~-~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~ 193 (282)
T PF14938_consen 115 KCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEG-SPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKY 193 (282)
T ss_dssp HHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCC-ChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccch
Confidence 3455555566666 6777777777766551 2 111 2345556666677777777777777766542221
Q ss_pred CH-HHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004470 675 TT-SSYNALIKGFLKRKKYLEARELFEEMRR 704 (751)
Q Consensus 675 ~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 704 (751)
+. ..+...+-++...||...|.+.+++...
T Consensus 194 ~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~ 224 (282)
T PF14938_consen 194 SAKEYFLKAILCHLAMGDYVAARKALERYCS 224 (282)
T ss_dssp HHHHHHHHHHHHHHHTT-HHHHHHHHHHHGT
T ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 11 1222333355556777777777777654
No 193
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.28 E-value=0.0045 Score=61.96 Aligned_cols=131 Identities=13% Similarity=0.083 Sum_probs=89.7
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHH-HHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 004470 572 VTFNVLMNGFCMSGMIEDGEKLLKWMLEKGLKPNAATYNPLIKQ-HCLRNDMRTTAKIYKGMCAQGITPDGNTYNILLQG 650 (751)
Q Consensus 572 ~~~~~li~~~~~~g~~~~A~~l~~~~~~~g~~p~~~~~~~l~~~-~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~ 650 (751)
.+|..++...-+.+..+.|..+|.++++.+ ..+..+|...... |...++.+.|.++|+..++. +..+...+...++.
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~ 79 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDF 79 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHH
Confidence 467777888878888888888888887542 2233444444444 23356666688888888775 44567777777888
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 004470 651 HCKARNMKEAWFLHKEMVQKGFNLT---TSSYNALIKGFLKRKKYLEARELFEEMRRG 705 (751)
Q Consensus 651 ~~~~g~~~~A~~~~~~~~~~~~~p~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 705 (751)
+.+.|+.+.|..+|++.+.. +.++ ...|...+.-=.+.|+.+.+.++.+++.+.
T Consensus 80 l~~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~ 136 (280)
T PF05843_consen 80 LIKLNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL 136 (280)
T ss_dssp HHHTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred HHHhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 88888888888888888765 3322 247888888878888888888888888774
No 194
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.26 E-value=0.083 Score=47.17 Aligned_cols=134 Identities=13% Similarity=0.097 Sum_probs=106.4
Q ss_pred CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CCcccHHH
Q 004470 253 CWNTASYNIMIHCLCRFGKIKEAHLLLLQMELRGCSPDVVSFSTIINGYCYLGELQRVLKLIEEMQIKGLK-PNPYTYNS 331 (751)
Q Consensus 253 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~~~~~~~ 331 (751)
.|++.-.-.|.+++.+.|++.+|...|++...--+.-|....-.+.++....+++..|...++.+.+.... -++.+.-.
T Consensus 86 ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll 165 (251)
T COG4700 86 APTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLL 165 (251)
T ss_pred chhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHH
Confidence 46777777899999999999999999999887545567777778888888899999999999999876311 13455667
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 004470 332 VVRLLCKTSKVVEAETILREMMNQGIVPDNVIYTTLIDGFCKMGNVAAAYRLFDEMR 388 (751)
Q Consensus 332 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 388 (751)
+.+.+...|++.+|+..|+..... -|+...-......+.+.|+.++|..-+.++.
T Consensus 166 ~aR~laa~g~~a~Aesafe~a~~~--ypg~~ar~~Y~e~La~qgr~~ea~aq~~~v~ 220 (251)
T COG4700 166 FARTLAAQGKYADAESAFEVAISY--YPGPQARIYYAEMLAKQGRLREANAQYVAVV 220 (251)
T ss_pred HHHHHHhcCCchhHHHHHHHHHHh--CCCHHHHHHHHHHHHHhcchhHHHHHHHHHH
Confidence 788999999999999999999886 5666666666677888998888776655544
No 195
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.25 E-value=0.0014 Score=49.75 Aligned_cols=65 Identities=22% Similarity=0.193 Sum_probs=49.7
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHC
Q 004470 640 DGNTYNILLQGHCKARNMKEAWFLHKEMVQKGFNLTTSSYNALIKGFLKRK-KYLEARELFEEMRRG 705 (751)
Q Consensus 640 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~ 705 (751)
+..+|..+...+...|++++|+..|+++++.++. +...|..++.++...| ++++|++.++++++.
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~-~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l 67 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPN-NAEAYYNLGLAYMKLGKDYEEAIEDFEKALKL 67 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHhCccHHHHHHHHHHHHHc
Confidence 4566777777788888888888888888877654 6777788888888888 688888888877763
No 196
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.23 E-value=0.2 Score=47.45 Aligned_cols=242 Identities=12% Similarity=0.070 Sum_probs=139.1
Q ss_pred CChhHHHHHHHHHHhcCChHHHHHHHHHHHcCCCCCchhhhHHHHHHHHHhhhcCCCC--hhhH-HHHHHHHHhcCChhH
Q 004470 127 PILEARCIVVQISVAAKDLKTAHGLIHDFWAKPNLDASIAFTHFVERLIYTYKDWGSD--PHVF-DIFFQVLVEARKLNE 203 (751)
Q Consensus 127 ~~~~~~~~~~~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~--~~~~-~~l~~~~~~~g~~~~ 203 (751)
+++..+..-..++.+.+.+++|..-|+.+-..+..+.-- .++. ..|++-..+ |.+. -+-+.+....|...+
T Consensus 67 ~~lq~wT~r~~~l~kLR~~~~a~~EL~~f~~lD~pdl~Y---ey~p---~iyp~rrGSmVPFsmR~lhAe~~~~lgnpqe 140 (366)
T KOG2796|consen 67 DSLQLWTVRLALLVKLRLFQNAEMELEPFGNLDQPDLYY---EYYP---HVYPGRRGSMVPFSMRILHAELQQYLGNPQE 140 (366)
T ss_pred hHHHHHHHHHHHHHHHhhhHHHHhhhhhhccCCCcceee---eecc---ccCCCCcCccccHHHHHHHHHHHHhcCCcHH
Confidence 445555666788888999999988888776554322100 0000 001000001 1111 112333344566655
Q ss_pred HHHHHHHHHhCCCccCHHhHHHHHHHHHhCCCCHHHHHHHHHhchhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 004470 204 ARKLFEKLLNYGLVISVDSCNLFLSRLSNTCDGLRMVVKSFTEFPELGICWNTASYNIMIHCLCRFGKIKEAHLLLLQME 283 (751)
Q Consensus 204 A~~~~~~~~~~g~~p~~~~~~~ll~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 283 (751)
.+.-+..+... ....+..+- .+...+...+.|++=.. ..-+.+++.+.-.|.+.-...++.+..
T Consensus 141 sLdRl~~L~~~--------V~~ii~~~e-~~~~~ESsv~lW~KRl~-------~Vmy~~~~~llG~kEy~iS~d~~~~vi 204 (366)
T KOG2796|consen 141 SLDRLHKLKTV--------VSKILANLE-QGLAEESSIRLWRKRLG-------RVMYSMANCLLGMKEYVLSVDAYHSVI 204 (366)
T ss_pred HHHHHHHHHHH--------HHHHHHHHH-hccchhhHHHHHHHHHH-------HHHHHHHHHHhcchhhhhhHHHHHHHH
Confidence 55544444321 111222221 22222455555554433 245666777777788888888888888
Q ss_pred hcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHH-----HHHHhcCCHHHHHHHHHHHHHCCCC
Q 004470 284 LRGCSPDVVSFSTIINGYCYLGELQRVLKLIEEMQIKGLKPNPYTYNSVV-----RLLCKTSKVVEAETILREMMNQGIV 358 (751)
Q Consensus 284 ~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li-----~~~~~~g~~~~A~~~~~~m~~~g~~ 358 (751)
+...+.+++....|+..-.+.|+.+.|...|++..+..-+.|..+.+.++ ..+.-.+++.+|...+.+....+ +
T Consensus 205 ~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D-~ 283 (366)
T KOG2796|consen 205 KYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMD-P 283 (366)
T ss_pred HhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheecccchHHHHHHHhhccccC-C
Confidence 77666677777778888888888888888888776554445555555444 23445667777777777776653 3
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC
Q 004470 359 PDNVIYTTLIDGFCKMGNVAAAYRLFDEMRGLN 391 (751)
Q Consensus 359 p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 391 (751)
.|....|.-.-+..-.|+..+|++.++.|.+..
T Consensus 284 ~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~ 316 (366)
T KOG2796|consen 284 RNAVANNNKALCLLYLGKLKDALKQLEAMVQQD 316 (366)
T ss_pred CchhhhchHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 355555554444455677778888887777753
No 197
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.21 E-value=0.0011 Score=50.24 Aligned_cols=53 Identities=26% Similarity=0.328 Sum_probs=37.3
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 004470 652 CKARNMKEAWFLHKEMVQKGFNLTTSSYNALIKGFLKRKKYLEARELFEEMRRG 705 (751)
Q Consensus 652 ~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 705 (751)
.+.|++++|+++|+++.+..+. +...+..++.+|.+.|++++|..+++++...
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~-~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~ 54 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPD-NPEARLLLAQCYLKQGQYDEAEELLERLLKQ 54 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTT-SHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG
T ss_pred hhccCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 3567777777777777776554 6666667777777777777777777777764
No 198
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.14 E-value=0.0085 Score=60.03 Aligned_cols=48 Identities=17% Similarity=0.290 Sum_probs=18.7
Q ss_pred CHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004470 306 ELQRVLKLIEEMQIKGLKPNPYTYNSVVRLLCKTSKVVEAETILREMMN 354 (751)
Q Consensus 306 ~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 354 (751)
+.+.|.++|+...+. ++.+...|...++.+.+.|+.+.|..+|+..+.
T Consensus 51 d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~l~~~~d~~~aR~lfer~i~ 98 (280)
T PF05843_consen 51 DPKRARKIFERGLKK-FPSDPDFWLEYLDFLIKLNDINNARALFERAIS 98 (280)
T ss_dssp -HHHHHHHHHHHHHH-HTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHCC
T ss_pred CHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHhCcHHHHHHHHHHHHH
Confidence 333344444444433 222333344444444444444444444444443
No 199
>PRK15331 chaperone protein SicA; Provisional
Probab=97.11 E-value=0.013 Score=51.83 Aligned_cols=87 Identities=13% Similarity=0.009 Sum_probs=59.5
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 004470 616 HCLRNDMRTTAKIYKGMCAQGITPDGNTYNILLQGHCKARNMKEAWFLHKEMVQKGFNLTTSSYNALIKGFLKRKKYLEA 695 (751)
Q Consensus 616 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A 695 (751)
+...|++++|..+|.-+...+. -+..-+..|..++-..+++++|+..|..+...+.. |+..+-..+.++...|+.+.|
T Consensus 47 ~y~~Gk~~eA~~~F~~L~~~d~-~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~-dp~p~f~agqC~l~l~~~~~A 124 (165)
T PRK15331 47 FYNQGRLDEAETFFRFLCIYDF-YNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKN-DYRPVFFTGQCQLLMRKAAKA 124 (165)
T ss_pred HHHCCCHHHHHHHHHHHHHhCc-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccC-CCCccchHHHHHHHhCCHHHH
Confidence 4567777777777777766442 24555666667777777777777777776665443 555555667777777777777
Q ss_pred HHHHHHHHH
Q 004470 696 RELFEEMRR 704 (751)
Q Consensus 696 ~~~~~~~~~ 704 (751)
...|+...+
T Consensus 125 ~~~f~~a~~ 133 (165)
T PRK15331 125 RQCFELVNE 133 (165)
T ss_pred HHHHHHHHh
Confidence 777777776
No 200
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=97.09 E-value=0.095 Score=55.61 Aligned_cols=22 Identities=27% Similarity=0.413 Sum_probs=16.4
Q ss_pred HHHHhcCCHHHHHHHHHHHHHC
Q 004470 684 KGFLKRKKYLEARELFEEMRRG 705 (751)
Q Consensus 684 ~~~~~~g~~~~A~~~~~~~~~~ 705 (751)
.+|-+.|+-.||..+++++...
T Consensus 825 kAfhkAGr~~EA~~vLeQLtnn 846 (1081)
T KOG1538|consen 825 KAFHKAGRQREAVQVLEQLTNN 846 (1081)
T ss_pred HHHHHhcchHHHHHHHHHhhhh
Confidence 4566778888888888887654
No 201
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=97.05 E-value=0.0017 Score=49.86 Aligned_cols=56 Identities=14% Similarity=0.066 Sum_probs=34.2
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 004470 649 QGHCKARNMKEAWFLHKEMVQKGFNLTTSSYNALIKGFLKRKKYLEARELFEEMRRG 705 (751)
Q Consensus 649 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 705 (751)
..|.+.+++++|++.++.++..++. ++..|...+.++.+.|++++|.+.++++++.
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~ 58 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPD-DPELWLQRARCLFQLGRYEEALEDLERALEL 58 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcc-cchhhHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 3455666666666666666665444 5555666666666666666666666666654
No 202
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=97.04 E-value=0.082 Score=50.15 Aligned_cols=49 Identities=18% Similarity=0.194 Sum_probs=34.8
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHhcCChhHHH
Q 004470 681 ALIKGFLKRKKYLEARELFEEMRRGGLVAD----REIYYFFVDINFEEGNTEITL 731 (751)
Q Consensus 681 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~ 731 (751)
.++.-|.+.|.+..|..-++.+++. -|+ ......++.++.+.|..+.|.
T Consensus 146 ~ia~~Y~~~~~y~aA~~r~~~v~~~--yp~t~~~~~al~~l~~~y~~l~~~~~a~ 198 (203)
T PF13525_consen 146 YIARFYYKRGKYKAAIIRFQYVIEN--YPDTPAAEEALARLAEAYYKLGLKQAAD 198 (203)
T ss_dssp HHHHHHHCTT-HHHHHHHHHHHHHH--STTSHHHHHHHHHHHHHHHHTT-HHHHH
T ss_pred HHHHHHHHcccHHHHHHHHHHHHHH--CCCCchHHHHHHHHHHHHHHhCChHHHH
Confidence 4677788899999999999998884 232 245567778888888887554
No 203
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.03 E-value=0.0095 Score=54.84 Aligned_cols=103 Identities=16% Similarity=0.236 Sum_probs=65.8
Q ss_pred CHHHHHHHHHHHHh-----cCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccH
Q 004470 255 NTASYNIMIHCLCR-----FGKIKEAHLLLLQMELRGCSPDVVSFSTIINGYCYLGELQRVLKLIEEMQIKGLKPNPYTY 329 (751)
Q Consensus 255 ~~~~~~~li~~~~~-----~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~ 329 (751)
|-.+|..+++.|.+ +|.++=....+..|.+.|+.-|..+|+.|++.+=+ |.+- -..+|+.+-
T Consensus 46 ~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPK-g~fv-p~n~fQ~~F----------- 112 (228)
T PF06239_consen 46 DKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPK-GKFV-PRNFFQAEF----------- 112 (228)
T ss_pred cHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCC-CCcc-cccHHHHHh-----------
Confidence 55666666666653 47777777788888888888888889888887654 3321 111111110
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC
Q 004470 330 NSVVRLLCKTSKVVEAETILREMMNQGIVPDNVIYTTLIDGFCKMGN 376 (751)
Q Consensus 330 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~ 376 (751)
.- .-.+.+-|++++++|...|+-||..++..|++.+.+.+.
T Consensus 113 ----~h--yp~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 113 ----MH--YPRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred ----cc--CcHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 00 112345577777777777777777777777777766554
No 204
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.03 E-value=0.47 Score=48.19 Aligned_cols=62 Identities=27% Similarity=0.337 Sum_probs=33.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 004470 294 FSTIINGYCYLGELQRVLKLIEEMQIKGLKPNPYTYNSVVRLLCKTSKVVEAETILREMMNQGIVPDNVIYTTLID 369 (751)
Q Consensus 294 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~ 369 (751)
|..+...-...|+.+-|..+++. .|+. ..=+..+.+.|+.+.| +.+..+.| .||. +|..|+.
T Consensus 3 ~a~IA~~A~~~GR~~LA~~LL~~------Ep~~---~~qVplLL~m~e~e~A---L~kAi~Sg-D~DL-i~~vLl~ 64 (319)
T PF04840_consen 3 YAEIARKAYEEGRPKLATKLLEL------EPRA---SKQVPLLLKMGEDELA---LNKAIESG-DTDL-IYLVLLH 64 (319)
T ss_pred HHHHHHHHHHcChHHHHHHHHHc------CCCh---HHHHHHHhcCCchHHH---HHHHHHcC-CccH-HHHHHHH
Confidence 45555556667777777776652 3332 1224455566666555 45555554 3444 4444444
No 205
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=97.02 E-value=0.5 Score=48.32 Aligned_cols=132 Identities=18% Similarity=0.139 Sum_probs=101.5
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHHcC-CCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHH-HHHH
Q 004470 570 SVVTFNVLMNGFCMSGMIEDGEKLLKWMLEKG-LKPNAATYNPLIKQHCLRNDMRTTAKIYKGMCAQGITPDGNT-YNIL 647 (751)
Q Consensus 570 ~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~g-~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~-~~~l 647 (751)
-...|..+++.-.+..-++.|..+|-++.+.| ..+++.++++++..+ ..|+...|..+|+--... -||... .+-.
T Consensus 396 ~t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~-~~~d~~ta~~ifelGl~~--f~d~~~y~~ky 472 (660)
T COG5107 396 LTFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYY-ATGDRATAYNIFELGLLK--FPDSTLYKEKY 472 (660)
T ss_pred hhhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHH-hcCCcchHHHHHHHHHHh--CCCchHHHHHH
Confidence 34567888888888888999999999999888 677888899998877 467888899999865553 344433 3455
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 004470 648 LQGHCKARNMKEAWFLHKEMVQKGFNLT--TSSYNALIKGFLKRKKYLEARELFEEMRRG 705 (751)
Q Consensus 648 i~~~~~~g~~~~A~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 705 (751)
+.-+...|+-+.|..+|+..+++ +..+ ..+|..++.--..-|+...|..+=++|.+.
T Consensus 473 l~fLi~inde~naraLFetsv~r-~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~ 531 (660)
T COG5107 473 LLFLIRINDEENARALFETSVER-LEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFREL 531 (660)
T ss_pred HHHHHHhCcHHHHHHHHHHhHHH-HHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHH
Confidence 66677889999999999977764 2223 468888888888889998888888888774
No 206
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=96.98 E-value=0.0039 Score=47.90 Aligned_cols=65 Identities=17% Similarity=0.166 Sum_probs=51.8
Q ss_pred HHHHHhcCChHHHHHHHHHHHcCCCCCchhhhHHHHHHHHHhhhcCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 004470 136 VQISVAAKDLKTAHGLIHDFWAKPNLDASIAFTHFVERLIYTYKDWGSDPHVFDIFFQVLVEARKLNEARKLFEKLLNYG 215 (751)
Q Consensus 136 ~~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g 215 (751)
.+++...++++.|...++.++..+ |.++..+...+.++.+.|++++|.+.|++.++.
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~----------------------p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~- 58 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELD----------------------PDDPELWLQRARCLFQLGRYEEALEDLERALEL- 58 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhC----------------------cccchhhHHHHHHHHHhccHHHHHHHHHHHHHH-
Confidence 456777889999999888888765 677788888899999999999999999999887
Q ss_pred CccCHHhHH
Q 004470 216 LVISVDSCN 224 (751)
Q Consensus 216 ~~p~~~~~~ 224 (751)
.|+.....
T Consensus 59 -~p~~~~~~ 66 (73)
T PF13371_consen 59 -SPDDPDAR 66 (73)
T ss_pred -CCCcHHHH
Confidence 45554433
No 207
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.95 E-value=0.0073 Score=57.80 Aligned_cols=102 Identities=19% Similarity=0.134 Sum_probs=80.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-CC-CCCHHHHHHHH
Q 004470 643 TYNILLQGHCKARNMKEAWFLHKEMVQKGFN--LTTSSYNALIKGFLKRKKYLEARELFEEMRRG-GL-VADREIYYFFV 718 (751)
Q Consensus 643 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~--p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~-~~~~~~~~~l~ 718 (751)
.|+.-+. +.+.|++.+|...|...++..+. ..+..+-.|+..++..|++++|..+|..+.+. +- +.-++.+.-|+
T Consensus 144 ~Y~~A~~-~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg 222 (262)
T COG1729 144 LYNAALD-LYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLG 222 (262)
T ss_pred HHHHHHH-HHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHH
Confidence 4665554 45678899999999999987433 13446667899999999999999999999873 21 23458888999
Q ss_pred HHHHhcCChhHHHHHHHHHHHcCCCCC
Q 004470 719 DINFEEGNTEITLELCDAAIECYLVGK 745 (751)
Q Consensus 719 ~~~~~~g~~~~A~~~~~~~~~~~~~~~ 745 (751)
.+..+.|+.++|+..|+++++.|+...
T Consensus 223 ~~~~~l~~~d~A~atl~qv~k~YP~t~ 249 (262)
T COG1729 223 VSLGRLGNTDEACATLQQVIKRYPGTD 249 (262)
T ss_pred HHHHHhcCHHHHHHHHHHHHHHCCCCH
Confidence 999999999999999999999987643
No 208
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=96.94 E-value=0.53 Score=47.30 Aligned_cols=296 Identities=14% Similarity=0.138 Sum_probs=164.5
Q ss_pred HHHHHHHHHh--cCCHHHHHHHHHHHHHCCCCCCcccHHHHHHH--HHhcCCHHHHHHHHHHHHHCCCCCCHHH--HHHH
Q 004470 294 FSTIINGYCY--LGELQRVLKLIEEMQIKGLKPNPYTYNSVVRL--LCKTSKVVEAETILREMMNQGIVPDNVI--YTTL 367 (751)
Q Consensus 294 ~~~li~~~~~--~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~--~~~~g~~~~A~~~~~~m~~~g~~p~~~~--~~~l 367 (751)
|..|-.++.. .|+-..|.++-.+..+. +..|......|+.+ -.-.|+++.|.+-|+.|... |.... ...|
T Consensus 85 yqALStGliAagAGda~lARkmt~~~~~l-lssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~d---PEtRllGLRgL 160 (531)
T COG3898 85 YQALSTGLIAAGAGDASLARKMTARASKL-LSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDD---PETRLLGLRGL 160 (531)
T ss_pred HHHHhhhhhhhccCchHHHHHHHHHHHhh-hhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcC---hHHHHHhHHHH
Confidence 4444444433 45666666655554322 22244433333332 23467788888888877763 22211 1112
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCCCHHH--HHHHHHHHH--
Q 004470 368 IDGFCKMGNVAAAYRLFDEMRGLNIIPDLLTYTAIICGFCLTGKMVEAEKLFHEMLGRG-LEPDEIV--YTALIDGYC-- 442 (751)
Q Consensus 368 i~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-~~p~~~~--~~~li~~~~-- 442 (751)
.-.--+.|+.+.|...-++.-..-.. -...+...+...|..|+++.|+++++.-.... +.++..- -..|+.+-.
T Consensus 161 yleAqr~GareaAr~yAe~Aa~~Ap~-l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s 239 (531)
T COG3898 161 YLEAQRLGAREAARHYAERAAEKAPQ-LPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMS 239 (531)
T ss_pred HHHHHhcccHHHHHHHHHHHHhhccC-CchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHH
Confidence 22223567777777777776654332 35566777778888888888888887655432 2333221 112222111
Q ss_pred -HcCChhHHHHHHHHHHhCCCCCCHHHH-HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHH
Q 004470 443 -KAGGMKKAFSLHNNMVHMRLTPNVVTY-TALADGLCKSGELETANELLHEMCRKGLQLNIYTYNSIVNGLCKAGNILQA 520 (751)
Q Consensus 443 -~~g~~~~A~~~~~~~~~~~~~~~~~~~-~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A 520 (751)
-.-+...|...-.+..+ +.|+.+-- ..-...+.+.|+..++-.+++.+-+..+.|+.. . +..+.+.|+. +
T Consensus 240 ~ldadp~~Ar~~A~~a~K--L~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP~ia--~--lY~~ar~gdt--a 311 (531)
T COG3898 240 LLDADPASARDDALEANK--LAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHPDIA--L--LYVRARSGDT--A 311 (531)
T ss_pred HhcCChHHHHHHHHHHhh--cCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCChHHH--H--HHHHhcCCCc--H
Confidence 11234445544444443 34554322 233466788889999999998888875555432 2 2234455543 2
Q ss_pred HHHHHH---HHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh-cCChhHHHHHHHH
Q 004470 521 VKLMED---MEVAGFHPDTFTYTTIMDAYCKSGEMVKAHELLRDMLDKGLQPSVVTFNVLMNGFCM-SGMIEDGEKLLKW 596 (751)
Q Consensus 521 ~~~~~~---~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~-~g~~~~A~~l~~~ 596 (751)
..-++. +.... +.+..+...+..+-...|++..|..--+..... .|....|..|.+.-.. .|+-.++...+.+
T Consensus 312 ~dRlkRa~~L~slk-~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~--~pres~~lLlAdIeeAetGDqg~vR~wlAq 388 (531)
T COG3898 312 LDRLKRAKKLESLK-PNNAESSLAVAEAALDAGEFSAARAKAEAAARE--APRESAYLLLADIEEAETGDQGKVRQWLAQ 388 (531)
T ss_pred HHHHHHHHHHHhcC-ccchHHHHHHHHHHHhccchHHHHHHHHHHhhh--CchhhHHHHHHHHHhhccCchHHHHHHHHH
Confidence 222222 22221 345566667777777788888877766666543 6677777777765543 4888888888877
Q ss_pred HHHcCCCCC
Q 004470 597 MLEKGLKPN 605 (751)
Q Consensus 597 ~~~~g~~p~ 605 (751)
.+..--.|+
T Consensus 389 av~APrdPa 397 (531)
T COG3898 389 AVKAPRDPA 397 (531)
T ss_pred HhcCCCCCc
Confidence 776544443
No 209
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=96.87 E-value=0.024 Score=52.35 Aligned_cols=86 Identities=22% Similarity=0.324 Sum_probs=44.2
Q ss_pred CHHHHHHHHHHHHH-----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc----------------CCHHHHHHH
Q 004470 360 DNVIYTTLIDGFCK-----MGNVAAAYRLFDEMRGLNIIPDLLTYTAIICGFCLT----------------GKMVEAEKL 418 (751)
Q Consensus 360 ~~~~~~~li~~~~~-----~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~----------------g~~~~A~~~ 418 (751)
+..+|..+++.|.+ .|.++=....+..|.+.|+.-|..+|+.|++.+=+. .+-+-|+++
T Consensus 46 ~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~hyp~Qq~c~i~l 125 (228)
T PF06239_consen 46 DKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMHYPRQQECAIDL 125 (228)
T ss_pred cHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhccCcHHHHHHHHH
Confidence 44444444444442 233444444444455555555555555554443321 223446666
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHHcC
Q 004470 419 FHEMLGRGLEPDEIVYTALIDGYCKAG 445 (751)
Q Consensus 419 ~~~m~~~~~~p~~~~~~~li~~~~~~g 445 (751)
+++|...|+.||..++..+++.+.+.+
T Consensus 126 L~qME~~gV~Pd~Et~~~ll~iFG~~s 152 (228)
T PF06239_consen 126 LEQMENNGVMPDKETEQMLLNIFGRKS 152 (228)
T ss_pred HHHHHHcCCCCcHHHHHHHHHHhcccc
Confidence 666666666666666666666664444
No 210
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=96.86 E-value=0.7 Score=47.51 Aligned_cols=90 Identities=18% Similarity=0.190 Sum_probs=57.5
Q ss_pred ChhHHHHHHHHHHHcCCCCC----HhhHHHHHHH--HHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 004470 586 MIEDGEKLLKWMLEKGLKPN----AATYNPLIKQ--HCLRNDMRTTAKIYKGMCAQGITPDGNTYNILLQGHCKARNMKE 659 (751)
Q Consensus 586 ~~~~A~~l~~~~~~~g~~p~----~~~~~~l~~~--~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~ 659 (751)
.+..-.++-+-+.+.|+.|- ...-|.|.++ +..+|++.++.-.-.-+.+ +.|++.+|..++-++....++++
T Consensus 436 ~~~rLlkLe~fi~e~gl~~i~i~e~eian~LaDAEyLysqgey~kc~~ys~WL~~--iaPS~~~~RLlGl~l~e~k~Y~e 513 (549)
T PF07079_consen 436 AIPRLLKLEDFITEVGLTPITISEEEIANFLADAEYLYSQGEYHKCYLYSSWLTK--IAPSPQAYRLLGLCLMENKRYQE 513 (549)
T ss_pred hHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHH--hCCcHHHHHHHHHHHHHHhhHHH
Confidence 34444555555556666553 2344455444 4577888877655544444 67888888888888888888888
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHH
Q 004470 660 AWFLHKEMVQKGFNLTTSSYNAL 682 (751)
Q Consensus 660 A~~~~~~~~~~~~~p~~~~~~~l 682 (751)
|..++..+ +|+..+++.-
T Consensus 514 A~~~l~~L-----P~n~~~~dsk 531 (549)
T PF07079_consen 514 AWEYLQKL-----PPNERMRDSK 531 (549)
T ss_pred HHHHHHhC-----CCchhhHHHH
Confidence 88887753 4566666544
No 211
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=96.86 E-value=0.0034 Score=48.98 Aligned_cols=63 Identities=22% Similarity=0.302 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHC--CCCC---C-HHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 004470 677 SSYNALIKGFLKRKKYLEARELFEEMRRG--GLVA---D-REIYYFFVDINFEEGNTEITLELCDAAIE 739 (751)
Q Consensus 677 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~---~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 739 (751)
.+++.++..|...|++++|+..|+++++. ...+ + ..++..++.++...|++++|+++++++++
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 45666777777777777777777776642 1111 1 34566667777777777777777777765
No 212
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=96.75 E-value=0.13 Score=45.82 Aligned_cols=72 Identities=19% Similarity=0.237 Sum_probs=51.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----CCCCCCHHHHH
Q 004470 643 TYNILLQGHCKARNMKEAWFLHKEMVQKGFNLTTSSYNALIKGFLKRKKYLEARELFEEMRR-----GGLVADREIYY 715 (751)
Q Consensus 643 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~~~~ 715 (751)
....++..+...|++++|..+.+.++...+. +...|..++.+|...|+..+|.+.|+++.+ .|+.|++.+-.
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~-~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~~ 140 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALDPY-DEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETRA 140 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT--HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHHH
Confidence 4456677777888889999888888887655 788888888999999999988888888753 58888776643
No 213
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.75 E-value=0.54 Score=44.61 Aligned_cols=174 Identities=11% Similarity=-0.052 Sum_probs=118.3
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-----HHHHHHHH
Q 004470 574 FNVLMNGFCMSGMIEDGEKLLKWMLEKGLKPNAATYNPLIKQHCLRNDMRTTAKIYKGMCAQGITPD-----GNTYNILL 648 (751)
Q Consensus 574 ~~~li~~~~~~g~~~~A~~l~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~-----~~~~~~li 648 (751)
-+.++..+.-.|.+.-...++++.++...+.+......|++.-.+.||.+.|...|++..+..-..| ........
T Consensus 180 my~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a 259 (366)
T KOG2796|consen 180 MYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSA 259 (366)
T ss_pred HHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhh
Confidence 4556666666788888899999999877667788888888888999999999999997765322223 33333334
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc----
Q 004470 649 QGHCKARNMKEAWFLHKEMVQKGFNLTTSSYNALIKGFLKRKKYLEARELFEEMRRGGLVADREIYYFFVDINFEE---- 724 (751)
Q Consensus 649 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---- 724 (751)
..|.-++++.+|...+.+....+.. |+...|.-+-++.-.|+..+|++.++.|.+. .|.+.+-..++-.++..
T Consensus 260 ~i~lg~nn~a~a~r~~~~i~~~D~~-~~~a~NnKALcllYlg~l~DAiK~~e~~~~~--~P~~~l~es~~~nL~tmyEL~ 336 (366)
T KOG2796|consen 260 FLHLGQNNFAEAHRFFTEILRMDPR-NAVANNNKALCLLYLGKLKDALKQLEAMVQQ--DPRHYLHESVLFNLTTMYELE 336 (366)
T ss_pred hheecccchHHHHHHHhhccccCCC-chhhhchHHHHHHHHHHHHHHHHHHHHHhcc--CCccchhhhHHHHHHHHHHHH
Confidence 4566778999999999999888655 7777777777777789999999999999985 45544444333222221
Q ss_pred -CChhHHHHHHHHHHHcCCCCCCcccCC
Q 004470 725 -GNTEITLELCDAAIECYLVGKATDENK 751 (751)
Q Consensus 725 -g~~~~A~~~~~~~~~~~~~~~~~~~~~ 751 (751)
.+.-+....+.+.+. +..|++.|.+|
T Consensus 337 Ys~~~~~k~~l~~~ia-~~~~d~f~~~c 363 (366)
T KOG2796|consen 337 YSRSMQKKQALLEAVA-GKEGDSFNTQC 363 (366)
T ss_pred hhhhhhHHHHHHHHHh-ccCCCcccchh
Confidence 122233344444443 33456555543
No 214
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=96.74 E-value=0.59 Score=44.98 Aligned_cols=222 Identities=18% Similarity=0.059 Sum_probs=113.9
Q ss_pred CCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 004470 480 GELETANELLHEMCRKGLQL-NIYTYNSIVNGLCKAGNILQAVKLMEDMEVA-GFHPDTFTYTTIMDAYCKSGEMVKAHE 557 (751)
Q Consensus 480 g~~~~A~~l~~~m~~~g~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~A~~ 557 (751)
+....+...+.......... ....+......+...++...+...+...... ........+......+...+++..+.+
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (291)
T COG0457 37 GELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALE 116 (291)
T ss_pred hhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHH
Confidence 45555555555555443221 2445555666666666677666666666542 123444555555566666666666666
Q ss_pred HHHHHHhCCCCCCHHHHHHHHH-HHHhcCChhHHHHHHHHHHHcCC--CCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 004470 558 LLRDMLDKGLQPSVVTFNVLMN-GFCMSGMIEDGEKLLKWMLEKGL--KPNAATYNPLIKQHCLRNDMRTTAKIYKGMCA 634 (751)
Q Consensus 558 ~~~~~~~~~~~p~~~~~~~li~-~~~~~g~~~~A~~l~~~~~~~g~--~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 634 (751)
.+.........+ ......... .+...|+++.|...+.+...... ......+......+...++.+.+...+.+...
T Consensus 117 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 195 (291)
T COG0457 117 LLEKALALDPDP-DLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALK 195 (291)
T ss_pred HHHHHHcCCCCc-chHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHh
Confidence 666666543222 112222222 45566666666666666644211 01222333333334555666666666666655
Q ss_pred CCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004470 635 QGITP-DGNTYNILLQGHCKARNMKEAWFLHKEMVQKGFNLTTSSYNALIKGFLKRKKYLEARELFEEMRR 704 (751)
Q Consensus 635 ~g~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 704 (751)
.. .. ....+..+...+...+++++|...+......... ....+..+...+...|..+++...+++..+
T Consensus 196 ~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (291)
T COG0457 196 LN-PDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPD-NAEALYNLALLLLELGRYEEALEALEKALE 264 (291)
T ss_pred hC-cccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcc-cHHHHhhHHHHHHHcCCHHHHHHHHHHHHH
Confidence 32 12 2444555555556666666666666666554222 233344444444444556666666665555
No 215
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.73 E-value=1.3 Score=49.13 Aligned_cols=180 Identities=14% Similarity=0.160 Sum_probs=116.5
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhCCCccCHH-hHHHHHHHHHhCCCCHHHHHHHHHhchhcCCCcCHHHHHHHHHHH
Q 004470 188 FDIFFQVLVEARKLNEARKLFEKLLNYGLVISVD-SCNLFLSRLSNTCDGLRMVVKSFTEFPELGICWNTASYNIMIHCL 266 (751)
Q Consensus 188 ~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~-~~~~ll~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 266 (751)
...-+..+.+..+++-|+.+-.. .+..++.. .+..--+....+.|++++|...|-+.+.. ..| ..+|.-|
T Consensus 337 le~kL~iL~kK~ly~~Ai~LAk~---~~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~-----s~Vi~kf 407 (933)
T KOG2114|consen 337 LETKLDILFKKNLYKVAINLAKS---QHLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEP-----SEVIKKF 407 (933)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHh---cCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CCh-----HHHHHHh
Confidence 44556777888888888876553 33233322 12222233334679999999998777654 222 3466667
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCHHHHH
Q 004470 267 CRFGKIKEAHLLLLQMELRGCSPDVVSFSTIINGYCYLGELQRVLKLIEEMQIKGLKPNPYTYNSVVRLLCKTSKVVEAE 346 (751)
Q Consensus 267 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~ 346 (751)
....++.+-..+++.+.+.|.. +...-..|+..|.+.++.++-.++.+.-. .|.. ..-....+..+.+.+-.++|.
T Consensus 408 Ldaq~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~efI~~~~-~g~~--~fd~e~al~Ilr~snyl~~a~ 483 (933)
T KOG2114|consen 408 LDAQRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLTEFISKCD-KGEW--FFDVETALEILRKSNYLDEAE 483 (933)
T ss_pred cCHHHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHHHHHhcCC-Ccce--eeeHHHHHHHHHHhChHHHHH
Confidence 7777777888888888888874 55556788999999999988777776543 2211 223556677777777777776
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 004470 347 TILREMMNQGIVPDNVIYTTLIDGFCKMGNVAAAYRLFDEMR 388 (751)
Q Consensus 347 ~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 388 (751)
.+-..... .......++ -..|++++|++.+..+.
T Consensus 484 ~LA~k~~~-----he~vl~ill---e~~~ny~eAl~yi~slp 517 (933)
T KOG2114|consen 484 LLATKFKK-----HEWVLDILL---EDLHNYEEALRYISSLP 517 (933)
T ss_pred HHHHHhcc-----CHHHHHHHH---HHhcCHHHHHHHHhcCC
Confidence 65544332 333444443 35688999999887764
No 216
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=96.71 E-value=0.84 Score=46.37 Aligned_cols=102 Identities=21% Similarity=0.240 Sum_probs=52.8
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC
Q 004470 367 LIDGFCKMGNVAAAYRLFDEMRGLNIIPDLLTYTAIICGFCLTGKMVEAEKLFHEMLGRGLEPDEIVYTALIDGYCKAGG 446 (751)
Q Consensus 367 li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~ 446 (751)
-|.-+...|+...|.++-.+.. .|+..-|-..+.+++..+++++-.++-.. + -++.-|...+..|.+.|.
T Consensus 183 Ti~~li~~~~~k~A~kl~k~Fk----v~dkrfw~lki~aLa~~~~w~eL~~fa~s---k---KsPIGyepFv~~~~~~~~ 252 (319)
T PF04840_consen 183 TIRKLIEMGQEKQAEKLKKEFK----VPDKRFWWLKIKALAENKDWDELEKFAKS---K---KSPIGYEPFVEACLKYGN 252 (319)
T ss_pred HHHHHHHCCCHHHHHHHHHHcC----CcHHHHHHHHHHHHHhcCCHHHHHHHHhC---C---CCCCChHHHHHHHHHCCC
Confidence 3444455566555555544442 24555666666666666666655443221 1 123445555666666666
Q ss_pred hhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 004470 447 MKKAFSLHNNMVHMRLTPNVVTYTALADGLCKSGELETANEL 488 (751)
Q Consensus 447 ~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l 488 (751)
..+|..+..++ .+..-+..|.+.|++.+|.+.
T Consensus 253 ~~eA~~yI~k~----------~~~~rv~~y~~~~~~~~A~~~ 284 (319)
T PF04840_consen 253 KKEASKYIPKI----------PDEERVEMYLKCGDYKEAAQE 284 (319)
T ss_pred HHHHHHHHHhC----------ChHHHHHHHHHCCCHHHHHHH
Confidence 66665555441 113444555666666655543
No 217
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=96.71 E-value=0.23 Score=47.09 Aligned_cols=69 Identities=17% Similarity=0.110 Sum_probs=38.6
Q ss_pred hhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCc-cCHHhHHHHHHHHHhCCCCHHHHHHHHHhchhcCCC
Q 004470 185 PHVFDIFFQVLVEARKLNEARKLFEKLLNYGLV-ISVDSCNLFLSRLSNTCDGLRMVVKSFTEFPELGIC 253 (751)
Q Consensus 185 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~-p~~~~~~~ll~~l~~~~~~~~~a~~~~~~~~~~~~~ 253 (751)
+..+...+..+...|++.+|.+.|+.+...-+. |-.......++......|+++.|...|++++..-|.
T Consensus 5 ~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~ 74 (203)
T PF13525_consen 5 AEALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPN 74 (203)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC
Confidence 345556677788888888888888888765221 112222222333333556777777777666655443
No 218
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=96.63 E-value=0.027 Score=55.39 Aligned_cols=92 Identities=10% Similarity=-0.008 Sum_probs=51.6
Q ss_pred HhcCChHHHHHHHHHHHcCCCCCchhhhHHHHHHHHHhhhcCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCccC
Q 004470 140 VAAKDLKTAHGLIHDFWAKPNLDASIAFTHFVERLIYTYKDWGSDPHVFDIFFQVLVEARKLNEARKLFEKLLNYGLVIS 219 (751)
Q Consensus 140 ~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~ 219 (751)
...|++++|...++.+++.. ++.+..+.++..|+.+|...|++++|...|..+++. .|+
T Consensus 154 ~~~~~y~~Ai~af~~fl~~y-------------------P~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~--yP~ 212 (263)
T PRK10803 154 QDKSRQDDAIVAFQNFVKKY-------------------PDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKN--YPK 212 (263)
T ss_pred HhcCCHHHHHHHHHHHHHHC-------------------cCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCC
Confidence 34566777776676666543 111222455666677777777777777777776654 232
Q ss_pred ---HHhHHHHHHHHHhCCCCHHHHHHHHHhchhcCC
Q 004470 220 ---VDSCNLFLSRLSNTCDGLRMVVKSFTEFPELGI 252 (751)
Q Consensus 220 ---~~~~~~ll~~l~~~~~~~~~a~~~~~~~~~~~~ 252 (751)
.......++.++...|+.++|.++|+++++..|
T Consensus 213 s~~~~dAl~klg~~~~~~g~~~~A~~~~~~vi~~yP 248 (263)
T PRK10803 213 SPKAADAMFKVGVIMQDKGDTAKAKAVYQQVIKKYP 248 (263)
T ss_pred CcchhHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc
Confidence 222222234444456677777777776666543
No 219
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=96.63 E-value=0.037 Score=46.09 Aligned_cols=89 Identities=15% Similarity=0.037 Sum_probs=42.0
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCCCHH---HHHHHHHHHHhcCC
Q 004470 616 HCLRNDMRTTAKIYKGMCAQGITPDGNTYNILLQGHCKARNMKEAWFLHKEMVQK-GFNLTTS---SYNALIKGFLKRKK 691 (751)
Q Consensus 616 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~~~p~~~---~~~~l~~~~~~~g~ 691 (751)
....|+++.|++.|.+.+.. .+-....||.-..++.-.|+.++|++-++++++. |.. +.. .|..-...|...|+
T Consensus 53 laE~g~Ld~AlE~F~qal~l-~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~-trtacqa~vQRg~lyRl~g~ 130 (175)
T KOG4555|consen 53 LAEAGDLDGALELFGQALCL-APERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQ-TRTACQAFVQRGLLYRLLGN 130 (175)
T ss_pred HHhccchHHHHHHHHHHHHh-cccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHHHHhCc
Confidence 34455555555555555542 1123444555555555555555555555555543 221 211 22223333444555
Q ss_pred HHHHHHHHHHHHHCC
Q 004470 692 YLEARELFEEMRRGG 706 (751)
Q Consensus 692 ~~~A~~~~~~~~~~~ 706 (751)
-+.|..-|+.+.+.|
T Consensus 131 dd~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 131 DDAARADFEAAAQLG 145 (175)
T ss_pred hHHHHHhHHHHHHhC
Confidence 555555555555544
No 220
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=96.60 E-value=0.19 Score=46.19 Aligned_cols=161 Identities=15% Similarity=0.142 Sum_probs=96.7
Q ss_pred CCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCccCHHhHHHHHHHHHhCCCCHHHHHHHHHhchhcCCCcCHH--HH
Q 004470 182 GSDPHVFDIFFQVLVEARKLNEARKLFEKLLNYGLVISVDSCNLFLSRLSNTCDGLRMVVKSFTEFPELGICWNTA--SY 259 (751)
Q Consensus 182 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~ 259 (751)
|.-|.+|+.|+--+...|+++.|.+.|+...+.++.-+-...|..+.-++ .|++.-|.+-|.+.-..++. |++ .|
T Consensus 96 P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~YY--~gR~~LAq~d~~~fYQ~D~~-DPfR~LW 172 (297)
T COG4785 96 PDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYY--GGRYKLAQDDLLAFYQDDPN-DPFRSLW 172 (297)
T ss_pred CCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceeeee--cCchHhhHHHHHHHHhcCCC-ChHHHHH
Confidence 77889999999999999999999999999998854444445555555544 69999999988888777554 433 23
Q ss_pred HHHHHHHHhcCCHHHHHHHHH-HHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-------cccHHH
Q 004470 260 NIMIHCLCRFGKIKEAHLLLL-QMELRGCSPDVVSFSTIINGYCYLGELQRVLKLIEEMQIKGLKPN-------PYTYNS 331 (751)
Q Consensus 260 ~~li~~~~~~g~~~~A~~~~~-~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-------~~~~~~ 331 (751)
--++ -+.-+..+|..-+. +... .|..-|...|-.|.- |+.. ...+++++.... ..+ ..||--
T Consensus 173 LYl~---E~k~dP~~A~tnL~qR~~~----~d~e~WG~~iV~~yL-gkiS-~e~l~~~~~a~a-~~n~~~Ae~LTEtyFY 242 (297)
T COG4785 173 LYLN---EQKLDPKQAKTNLKQRAEK----SDKEQWGWNIVEFYL-GKIS-EETLMERLKADA-TDNTSLAEHLTETYFY 242 (297)
T ss_pred HHHH---HhhCCHHHHHHHHHHHHHh----ccHhhhhHHHHHHHH-hhcc-HHHHHHHHHhhc-cchHHHHHHHHHHHHH
Confidence 2222 23456666665443 3332 344455544443322 1111 112233332211 101 345666
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHC
Q 004470 332 VVRLLCKTSKVVEAETILREMMNQ 355 (751)
Q Consensus 332 li~~~~~~g~~~~A~~~~~~m~~~ 355 (751)
|.+.+...|+.++|..+|+-.+..
T Consensus 243 L~K~~l~~G~~~~A~~LfKLaian 266 (297)
T COG4785 243 LGKYYLSLGDLDEATALFKLAVAN 266 (297)
T ss_pred HHHHHhccccHHHHHHHHHHHHHH
Confidence 666666677777777766665543
No 221
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.59 E-value=1.4 Score=48.85 Aligned_cols=177 Identities=14% Similarity=0.121 Sum_probs=106.2
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHH
Q 004470 260 NIMIHCLCRFGKIKEAHLLLLQMELRGCSPDV--VSFSTIINGYCYLGELQRVLKLIEEMQIKGLKPNPYTYNSVVRLLC 337 (751)
Q Consensus 260 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~ 337 (751)
..-++.+++...++-|+.+...-. ..++. .......+-+.+.|++++|...|-+-... +.| ..+|.-|.
T Consensus 338 e~kL~iL~kK~ly~~Ai~LAk~~~---~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~-----s~Vi~kfL 408 (933)
T KOG2114|consen 338 ETKLDILFKKNLYKVAINLAKSQH---LDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEP-----SEVIKKFL 408 (933)
T ss_pred HHHHHHHHHhhhHHHHHHHHHhcC---CCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CCh-----HHHHHHhc
Confidence 445667777888888877664422 11221 12223344455788888888887766543 222 23456666
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 004470 338 KTSKVVEAETILREMMNQGIVPDNVIYTTLIDGFCKMGNVAAAYRLFDEMRGLNIIPDLLTYTAIICGFCLTGKMVEAEK 417 (751)
Q Consensus 338 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~ 417 (751)
...++.+-...++.+.+.|+. +...-..|+.+|.|.++.++-.+..+... .|.. ..-....+..+.+.+-.++|.-
T Consensus 409 daq~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~efI~~~~-~g~~--~fd~e~al~Ilr~snyl~~a~~ 484 (933)
T KOG2114|consen 409 DAQRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLTEFISKCD-KGEW--FFDVETALEILRKSNYLDEAEL 484 (933)
T ss_pred CHHHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHHHHHhcCC-Ccce--eeeHHHHHHHHHHhChHHHHHH
Confidence 666777777778888888765 44455778888888888888777665544 2211 1123445566666666666665
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHH
Q 004470 418 LFHEMLGRGLEPDEIVYTALIDGYCKAGGMKKAFSLHNNM 457 (751)
Q Consensus 418 ~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~ 457 (751)
+-..... .......++ -..|++++|++.+..+
T Consensus 485 LA~k~~~-----he~vl~ill---e~~~ny~eAl~yi~sl 516 (933)
T KOG2114|consen 485 LATKFKK-----HEWVLDILL---EDLHNYEEALRYISSL 516 (933)
T ss_pred HHHHhcc-----CHHHHHHHH---HHhcCHHHHHHHHhcC
Confidence 5443321 333333333 4467788888877665
No 222
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=96.52 E-value=1.2 Score=45.71 Aligned_cols=135 Identities=13% Similarity=0.093 Sum_probs=106.4
Q ss_pred CHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 004470 605 NAATYNPLIKQHCLRNDMRTTAKIYKGMCAQG-ITPDGNTYNILLQGHCKARNMKEAWFLHKEMVQKGFNLTTSSYNALI 683 (751)
Q Consensus 605 ~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~ 683 (751)
-..+|.+.+....+...++.|..+|-+..+.| ..+++..+++++..++ .|+..-|.++|+--+..- ..+..--...+
T Consensus 396 ~t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~f-~d~~~y~~kyl 473 (660)
T COG5107 396 LTFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLKF-PDSTLYKEKYL 473 (660)
T ss_pred hhhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHhC-CCchHHHHHHH
Confidence 34667888888888888999999999999988 5678888999988765 588999999999877653 32455556677
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCChhHHHHHHHHHHHcCC
Q 004470 684 KGFLKRKKYLEARELFEEMRRGGLVAD--REIYYFFVDINFEEGNTEITLELCDAAIECYL 742 (751)
Q Consensus 684 ~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 742 (751)
.-+..-++-+.|..+|+..+++ +..+ ..+|..++.-=..-|+...|..+-+++.+...
T Consensus 474 ~fLi~inde~naraLFetsv~r-~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~~p 533 (660)
T COG5107 474 LFLIRINDEENARALFETSVER-LEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRELVP 533 (660)
T ss_pred HHHHHhCcHHHHHHHHHHhHHH-HHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHHcC
Confidence 7888899999999999987764 2333 57788888777788999888888888776543
No 223
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=96.49 E-value=0.0093 Score=46.47 Aligned_cols=63 Identities=21% Similarity=0.212 Sum_probs=44.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCC-CC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004470 642 NTYNILLQGHCKARNMKEAWFLHKEMVQK----GFN-LT-TSSYNALIKGFLKRKKYLEARELFEEMRR 704 (751)
Q Consensus 642 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~----~~~-p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 704 (751)
.+|+.+...|...|++++|+..|++.++. |.. |+ ..++..++.++...|++++|++++++..+
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 45677777778888888888887777642 211 11 45677788888888888888888887764
No 224
>PRK11906 transcriptional regulator; Provisional
Probab=96.45 E-value=0.12 Score=53.82 Aligned_cols=118 Identities=11% Similarity=0.053 Sum_probs=73.7
Q ss_pred hHHHHHHHHhhh---hCCCCChhHHHHHHHHHHhc---C------ChHHHHHHHHHHHcCCCCCchhhhHHHHHHHHHhh
Q 004470 111 YRLVLDFFDWAC---LRREPILEARCIVVQISVAA---K------DLKTAHGLIHDFWAKPNLDASIAFTHFVERLIYTY 178 (751)
Q Consensus 111 ~~~al~~f~~~~---~~~~~~~~~~~~~~~~l~~~---~------~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~ 178 (751)
.+.|+..|..+. ..+|....+|+.++...... | ...+|..+.++++..+
T Consensus 274 ~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld------------------- 334 (458)
T PRK11906 274 IYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDIT------------------- 334 (458)
T ss_pred HHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcC-------------------
Confidence 366888888887 55676677777665443311 1 1224444444544444
Q ss_pred hcCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCccCHHhHHHHHHHHHhCCCCHHHHHHHHHhchhcCC
Q 004470 179 KDWGSDPHVFDIFFQVLVEARKLNEARKLFEKLLNYGLVISVDSCNLFLSRLSNTCDGLRMVVKSFTEFPELGI 252 (751)
Q Consensus 179 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~l~~~~~~~~~a~~~~~~~~~~~~ 252 (751)
+.++.+...++.++.-.|+++.|...|+++... .|+....-...+.+..-.|+.++|.+..++..+..|
T Consensus 335 ---~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L--~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP 403 (458)
T PRK11906 335 ---TVDGKILAIMGLITGLSGQAKVSHILFEQAKIH--STDIASLYYYRALVHFHNEKIEEARICIDKSLQLEP 403 (458)
T ss_pred ---CCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhc--CCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCc
Confidence 566777777777777777777777777777766 566555444444444445777777777777666643
No 225
>PRK15331 chaperone protein SicA; Provisional
Probab=96.45 E-value=0.12 Score=45.71 Aligned_cols=86 Identities=12% Similarity=0.069 Sum_probs=44.9
Q ss_pred HhcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 004470 582 CMSGMIEDGEKLLKWMLEKGLKPNAATYNPLIKQHCLRNDMRTTAKIYKGMCAQGITPDGNTYNILLQGHCKARNMKEAW 661 (751)
Q Consensus 582 ~~~g~~~~A~~l~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~ 661 (751)
...|++++|..+|.-+...+.. +..-+..|..++-..+++++|+..|......+. -|+..+-....+|...|+.+.|.
T Consensus 48 y~~Gk~~eA~~~F~~L~~~d~~-n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~-~dp~p~f~agqC~l~l~~~~~A~ 125 (165)
T PRK15331 48 YNQGRLDEAETFFRFLCIYDFY-NPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLK-NDYRPVFFTGQCQLLMRKAAKAR 125 (165)
T ss_pred HHCCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc-CCCCccchHHHHHHHhCCHHHHH
Confidence 3456666666666655543222 333344455555555666666666655544321 23333334455566666666666
Q ss_pred HHHHHHHH
Q 004470 662 FLHKEMVQ 669 (751)
Q Consensus 662 ~~~~~~~~ 669 (751)
..|+..++
T Consensus 126 ~~f~~a~~ 133 (165)
T PRK15331 126 QCFELVNE 133 (165)
T ss_pred HHHHHHHh
Confidence 66665555
No 226
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=96.44 E-value=0.085 Score=53.38 Aligned_cols=100 Identities=12% Similarity=0.007 Sum_probs=78.5
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 004470 641 GNTYNILLQGHCKARNMKEAWFLHKEMVQKGFNLTTSSYNALIKGFLKRKKYLEARELFEEMRRGGLVADREIYYFFVDI 720 (751)
Q Consensus 641 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 720 (751)
..++..+..+|.+.+++.+|++.-++.++.+.. |.-..-.-+.+|...|+++.|+..|+++++.. |.|..+-..++.+
T Consensus 257 ~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~-N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~-P~Nka~~~el~~l 334 (397)
T KOG0543|consen 257 LACHLNLAACYLKLKEYKEAIESCNKVLELDPN-NVKALYRRGQALLALGEYDLARDDFQKALKLE-PSNKAARAELIKL 334 (397)
T ss_pred HHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCC-chhHHHHHHHHHHhhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHH
Confidence 345677888899999999999999999988655 77777788899999999999999999999864 5566666667666
Q ss_pred HHhcCCh-hHHHHHHHHHHHcCC
Q 004470 721 NFEEGNT-EITLELCDAAIECYL 742 (751)
Q Consensus 721 ~~~~g~~-~~A~~~~~~~~~~~~ 742 (751)
-.+...+ +...++|..|+.+--
T Consensus 335 ~~k~~~~~~kekk~y~~mF~k~~ 357 (397)
T KOG0543|consen 335 KQKIREYEEKEKKMYANMFAKLA 357 (397)
T ss_pred HHHHHHHHHHHHHHHHHHhhccc
Confidence 5555444 445888888887643
No 227
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=96.36 E-value=0.28 Score=51.12 Aligned_cols=107 Identities=18% Similarity=0.124 Sum_probs=66.7
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH-HHHHH
Q 004470 641 GNTYNILLQGHCKARNMKEAWFLHKEMVQKGFN-LTTSSYNALIKGFLKRKKYLEARELFEEMRRGGLVADREI-YYFFV 718 (751)
Q Consensus 641 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~-p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~-~~~l~ 718 (751)
..+-..|..++.+.|+.+||++.+++|.+..+. .+..+...|+.+|...+.+.++..++.+--+...+..... |...+
T Consensus 259 ~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti~YTaAL 338 (539)
T PF04184_consen 259 VYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSATICYTAAL 338 (539)
T ss_pred hhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHHHHHHHH
Confidence 334445677777888888888888888765332 2345777888888888888888888888655443333333 22222
Q ss_pred HHHHhcCC---------------hhHHHHHHHHHHHcCC-CCCCc
Q 004470 719 DINFEEGN---------------TEITLELCDAAIECYL-VGKAT 747 (751)
Q Consensus 719 ~~~~~~g~---------------~~~A~~~~~~~~~~~~-~~~~~ 747 (751)
-.....|+ -..|.+.+.++++.+. +|+-+
T Consensus 339 LkaRav~d~fs~e~a~rRGls~ae~~aveAi~RAvefNPHVp~YL 383 (539)
T PF04184_consen 339 LKARAVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNPHVPKYL 383 (539)
T ss_pred HHHHhhccccCchhhhhcCCChhHHHHHHHHHHHHHhCCCCchhh
Confidence 12222232 1346677888888764 44433
No 228
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=96.32 E-value=0.12 Score=51.09 Aligned_cols=47 Identities=19% Similarity=0.205 Sum_probs=22.1
Q ss_pred HHhcCCHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHHHHcCCHHHHHH
Q 004470 476 LCKSGELETANELLHEMCRKG--LQLNIYTYNSIVNGLCKAGNILQAVK 522 (751)
Q Consensus 476 ~~~~g~~~~A~~l~~~m~~~g--~~~~~~~~~~li~~~~~~g~~~~A~~ 522 (751)
+....+.++|+..|.....+- ..---.+|..+..+.+..|.+++++.
T Consensus 16 Ly~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~ 64 (518)
T KOG1941|consen 16 LYQSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLK 64 (518)
T ss_pred HhcCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHH
Confidence 344555666666665544330 01112344455555555555555443
No 229
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=96.32 E-value=2.4 Score=47.09 Aligned_cols=78 Identities=12% Similarity=0.101 Sum_probs=44.0
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc----CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCh
Q 004470 656 NMKEAWFLHKEMVQKGFNLTTSSYNALIKGFLKR----KKYLEARELFEEMRRGGLVADREIYYFFVDINFE----EGNT 727 (751)
Q Consensus 656 ~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~----g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~ 727 (751)
+.+.+...+.+....| +......+.+.|... .+++.|...+....+.+ ......++..+-. .. +
T Consensus 454 ~~~~~~~~~~~a~~~g---~~~a~~~lgd~y~~g~g~~~d~~~a~~~y~~a~~~~----~~~~~nlg~~~e~g~g~~~-~ 525 (552)
T KOG1550|consen 454 TLERAFSLYSRAAAQG---NADAILKLGDYYYYGLGTGRDPEKAAAQYARASEQG----AQALFNLGYMHEHGEGIKV-L 525 (552)
T ss_pred chhHHHHHHHHHHhcc---CHHHHhhhcceeeecCCCCCChHHHHHHHHHHHHhh----hHHHhhhhhHHhcCcCcch-h
Confidence 4555666666665554 455666666666543 24677777777776654 3333333333221 12 5
Q ss_pred hHHHHHHHHHHHcC
Q 004470 728 EITLELCDAAIECY 741 (751)
Q Consensus 728 ~~A~~~~~~~~~~~ 741 (751)
..|.++++.+.+.+
T Consensus 526 ~~a~~~~~~~~~~~ 539 (552)
T KOG1550|consen 526 HLAKRYYDQASEED 539 (552)
T ss_pred HHHHHHHHHHHhcC
Confidence 67777777776643
No 230
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=96.30 E-value=1 Score=43.04 Aligned_cols=188 Identities=9% Similarity=-0.022 Sum_probs=105.5
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHHHHcCCCCCchhhhHHHHHHHHHhhhcCCCChhhHHHHHHHHHhcCChhHHHHHH
Q 004470 129 LEARCIVVQISVAAKDLKTAHGLIHDFWAKPNLDASIAFTHFVERLIYTYKDWGSDPHVFDIFFQVLVEARKLNEARKLF 208 (751)
Q Consensus 129 ~~~~~~~~~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 208 (751)
...+..-+......|++++|...++.+.+.. +..|..+.+...++.++.+.+++++|+...
T Consensus 34 ~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~-------------------p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~ 94 (254)
T COG4105 34 ASELYNEGLTELQKGNYEEAIKYFEALDSRH-------------------PFSPYSEQAQLDLAYAYYKNGEYDLALAYI 94 (254)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-------------------CCCcccHHHHHHHHHHHHhcccHHHHHHHH
Confidence 3445566777788999999999999987654 111344678889999999999999999999
Q ss_pred HHHHhCCCccCHHhHHHHHHHHHh------CCCCH---HHHHHHHHhchhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHH
Q 004470 209 EKLLNYGLVISVDSCNLFLSRLSN------TCDGL---RMVVKSFTEFPELGICWNTASYNIMIHCLCRFGKIKEAHLLL 279 (751)
Q Consensus 209 ~~~~~~g~~p~~~~~~~ll~~l~~------~~~~~---~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 279 (751)
++-++.-+......|-..|.++.. ...+. ..|..-|++++..=|. +.+ ..+|....
T Consensus 95 drFi~lyP~~~n~dY~~YlkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPn-S~Y--------------a~dA~~~i 159 (254)
T COG4105 95 DRFIRLYPTHPNADYAYYLKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPN-SRY--------------APDAKARI 159 (254)
T ss_pred HHHHHhCCCCCChhHHHHHHHHHHhccCCccccCHHHHHHHHHHHHHHHHHCCC-Ccc--------------hhhHHHHH
Confidence 999876433333445555544431 11222 3344444444443221 111 11121111
Q ss_pred HHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcc---cHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 004470 280 LQMELRGCSPDVVSFSTIINGYCYLGELQRVLKLIEEMQIKGLKPNPY---TYNSVVRLLCKTSKVVEAETILREMMNQ 355 (751)
Q Consensus 280 ~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~---~~~~li~~~~~~g~~~~A~~~~~~m~~~ 355 (751)
..+... =..-=..+...|.+.|.+-.|..-+++|.+. .+-... .+-.+..+|...|-.++|...-.-+...
T Consensus 160 ~~~~d~----LA~~Em~IaryY~kr~~~~AA~nR~~~v~e~-y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~N 233 (254)
T COG4105 160 VKLNDA----LAGHEMAIARYYLKRGAYVAAINRFEEVLEN-YPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGAN 233 (254)
T ss_pred HHHHHH----HHHHHHHHHHHHHHhcChHHHHHHHHHHHhc-cccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHhc
Confidence 111110 0000113445566777777777777777665 222222 3344456666677777766655544443
No 231
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=96.28 E-value=0.6 Score=47.91 Aligned_cols=32 Identities=13% Similarity=0.010 Sum_probs=26.1
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 004470 674 LTTSSYNALIKGFLKRKKYLEARELFEEMRRG 705 (751)
Q Consensus 674 p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 705 (751)
.+-..+.+++.+..-.|++++|.+.+++|.+.
T Consensus 303 ~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l 334 (374)
T PF13281_consen 303 QDYWDVATLLEASVLAGDYEKAIQAAEKAFKL 334 (374)
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhc
Confidence 35556677888888899999999999999875
No 232
>PRK11906 transcriptional regulator; Provisional
Probab=96.25 E-value=0.13 Score=53.56 Aligned_cols=149 Identities=14% Similarity=0.075 Sum_probs=110.6
Q ss_pred ChhHHHHHHHHHHHc-CCCCC-HhhHHHHHHHHHH---------cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 004470 586 MIEDGEKLLKWMLEK-GLKPN-AATYNPLIKQHCL---------RNDMRTTAKIYKGMCAQGITPDGNTYNILLQGHCKA 654 (751)
Q Consensus 586 ~~~~A~~l~~~~~~~-g~~p~-~~~~~~l~~~~~~---------~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~ 654 (751)
..+.|..+|.+.... .+.|+ ...|..+..++.. ..+..+|.++-++.++.+ +-|......+...+.-.
T Consensus 273 ~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld-~~Da~a~~~~g~~~~~~ 351 (458)
T PRK11906 273 SIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDIT-TVDGKILAIMGLITGLS 351 (458)
T ss_pred HHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhh
Confidence 567888999999832 24555 4556655555432 234667888888888875 44888888888888888
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHhcCChhHHH
Q 004470 655 RNMKEAWFLHKEMVQKGFNLTTSSYNALIKGFLKRKKYLEARELFEEMRRGGLVAD---REIYYFFVDINFEEGNTEITL 731 (751)
Q Consensus 655 g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~ 731 (751)
|+++.|...|+++...++. ...+|....+.+.-.|+.++|.+.++++++. .|. ..+....++.|+..+ .++|+
T Consensus 352 ~~~~~a~~~f~rA~~L~Pn-~A~~~~~~~~~~~~~G~~~~a~~~i~~alrL--sP~~~~~~~~~~~~~~~~~~~-~~~~~ 427 (458)
T PRK11906 352 GQAKVSHILFEQAKIHSTD-IASLYYYRALVHFHNEKIEEARICIDKSLQL--EPRRRKAVVIKECVDMYVPNP-LKNNI 427 (458)
T ss_pred cchhhHHHHHHHHhhcCCc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc--CchhhHHHHHHHHHHHHcCCc-hhhhH
Confidence 9999999999999987655 6778888888889999999999999998875 443 244445555677665 78888
Q ss_pred HHHHHHHH
Q 004470 732 ELCDAAIE 739 (751)
Q Consensus 732 ~~~~~~~~ 739 (751)
++|-+-.+
T Consensus 428 ~~~~~~~~ 435 (458)
T PRK11906 428 KLYYKETE 435 (458)
T ss_pred HHHhhccc
Confidence 88755433
No 233
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=96.20 E-value=0.028 Score=58.08 Aligned_cols=100 Identities=11% Similarity=-0.078 Sum_probs=74.7
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 004470 639 PDGNTYNILLQGHCKARNMKEAWFLHKEMVQKGFNLTT--SSYNALIKGFLKRKKYLEARELFEEMRRGGLVADREIYYF 716 (751)
Q Consensus 639 p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 716 (751)
.+...++.+..+|.+.|++++|+..|++.++.++.... .+|..++.+|.+.|++++|+..++++++.+ .+ .|..
T Consensus 73 ~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALels-n~---~f~~ 148 (453)
T PLN03098 73 KTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRDY-NL---KFST 148 (453)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc-ch---hHHH
Confidence 35788999999999999999999999999987655221 469999999999999999999999999853 22 1221
Q ss_pred HHH--HHHhcCChhHHHHHHHHHHHcCC
Q 004470 717 FVD--INFEEGNTEITLELCDAAIECYL 742 (751)
Q Consensus 717 l~~--~~~~~g~~~~A~~~~~~~~~~~~ 742 (751)
+.. .+..-.+.++..++++.+.+-|.
T Consensus 149 i~~DpdL~plR~~pef~eLlee~rk~G~ 176 (453)
T PLN03098 149 ILNDPDLAPFRASPEFKELQEEARKGGE 176 (453)
T ss_pred HHhCcchhhhcccHHHHHHHHHHHHhCC
Confidence 111 12223345577778888877775
No 234
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.18 E-value=0.12 Score=50.58 Aligned_cols=114 Identities=10% Similarity=-0.031 Sum_probs=52.3
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhhHH----HHHHHHHHcCCHHH
Q 004470 549 SGEMVKAHELLRDMLDKGLQPSVVTFNVLMNGFCMSGMIEDGEKLLKWMLEKGLKPNAATYN----PLIKQHCLRNDMRT 624 (751)
Q Consensus 549 ~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~g~~p~~~~~~----~l~~~~~~~g~~~~ 624 (751)
.|+..+|-..++++++. .|.|..++..--+++.-.|+.+.-...++++... ..+|...|. .+.-++...|-+++
T Consensus 116 ~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~g~y~d 193 (491)
T KOG2610|consen 116 RGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEECGIYDD 193 (491)
T ss_pred cccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHhccchh
Confidence 45555555555555543 3445555555555555555555555555554433 122222221 12222334455555
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 004470 625 TAKIYKGMCAQGITPDGNTYNILLQGHCKARNMKEAWFLHK 665 (751)
Q Consensus 625 A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 665 (751)
|.+.-++..+.+ +.|......+...+...|+.+++.++..
T Consensus 194 AEk~A~ralqiN-~~D~Wa~Ha~aHVlem~~r~Keg~eFM~ 233 (491)
T KOG2610|consen 194 AEKQADRALQIN-RFDCWASHAKAHVLEMNGRHKEGKEFMY 233 (491)
T ss_pred HHHHHHhhccCC-CcchHHHHHHHHHHHhcchhhhHHHHHH
Confidence 555555554432 2234444444444455555555555444
No 235
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=96.05 E-value=0.27 Score=43.76 Aligned_cols=70 Identities=20% Similarity=0.351 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----CCCCCCHHH
Q 004470 363 IYTTLIDGFCKMGNVAAAYRLFDEMRGLNIIPDLLTYTAIICGFCLTGKMVEAEKLFHEMLG-----RGLEPDEIV 433 (751)
Q Consensus 363 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~~~~p~~~~ 433 (751)
+...++..+...|++++|..+.+.+....+. |...|..+|.++...|+..+|++.|+.+.. .|+.|+..+
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~-~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~ 138 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALDPY-DEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPET 138 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT--HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHH
Confidence 3444555555566666666666666554433 555566666666666666666666655432 255555443
No 236
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=96.00 E-value=0.4 Score=51.87 Aligned_cols=184 Identities=15% Similarity=0.147 Sum_probs=116.3
Q ss_pred HHHHHHhhhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHcCCCCCchhhhHHHHHHHHHhhhcCCCChhhHHHHHH
Q 004470 114 VLDFFDWACLRREPILEARCIVVQISVAAKDLKTAHGLIHDFWAKPNLDASIAFTHFVERLIYTYKDWGSDPHVFDIFFQ 193 (751)
Q Consensus 114 al~~f~~~~~~~~~~~~~~~~~~~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~ 193 (751)
..-.|+-+.+--|+. ...++.+....|+-+.+.++|.+..+.+++. .++..++- -+|...+.
T Consensus 176 G~G~f~L~lSlLPp~---~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~--~~la~L~L-------------L~y~~~~~ 237 (468)
T PF10300_consen 176 GFGLFNLVLSLLPPK---VLKLLSFVGFSGDRELGLRLLWEASKSENIR--SPLAALVL-------------LWYHLVVP 237 (468)
T ss_pred HHHHHHHHHHhCCHH---HHHHHhhcCcCCcHHHHHHHHHHHhccCCcc--hHHHHHHH-------------HHHHHHHH
Confidence 445566666655544 4456677778899999999999987754322 22221111 12233333
Q ss_pred HHH----hcCChhHHHHHHHHHHhCCCccCHHhHHHHHHHHHhCCCCHHHHHHHHHhchhcCCC---cCHHHHHHHHHHH
Q 004470 194 VLV----EARKLNEARKLFEKLLNYGLVISVDSCNLFLSRLSNTCDGLRMVVKSFTEFPELGIC---WNTASYNIMIHCL 266 (751)
Q Consensus 194 ~~~----~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~l~~~~~~~~~a~~~~~~~~~~~~~---~~~~~~~~li~~~ 266 (751)
.++ .....+.|.+++..+.+. .|+...+...-+.+....|++++|.+.|+++...... .....+-.++-.+
T Consensus 238 ~~~~~~~~~~~~~~a~~lL~~~~~~--yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~ 315 (468)
T PF10300_consen 238 SFLGIDGEDVPLEEAEELLEEMLKR--YPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCH 315 (468)
T ss_pred HHcCCcccCCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHH
Confidence 332 356788899999999987 8999999999999998899999999999987642111 1223344556667
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHH-HHhcCCH-------HHHHHHHHHHH
Q 004470 267 CRFGKIKEAHLLLLQMELRGCSPDVVSFSTIING-YCYLGEL-------QRVLKLIEEMQ 318 (751)
Q Consensus 267 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~-~~~~g~~-------~~A~~~~~~m~ 318 (751)
+-.+++++|.+.|..+.+..-. +...|.-+..+ +...|+. ++|.++|.+..
T Consensus 316 ~~~~~w~~A~~~f~~L~~~s~W-Ska~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp 374 (468)
T PF10300_consen 316 MFQHDWEEAAEYFLRLLKESKW-SKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVP 374 (468)
T ss_pred HHHchHHHHHHHHHHHHhcccc-HHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHH
Confidence 7788888888888888764321 22223222222 2335655 66666666553
No 237
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=95.99 E-value=0.8 Score=38.64 Aligned_cols=139 Identities=17% Similarity=0.148 Sum_probs=76.9
Q ss_pred hcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 004470 583 MSGMIEDGEKLLKWMLEKGLKPNAATYNPLIKQHCLRNDMRTTAKIYKGMCAQGITPDGNTYNILLQGHCKARNMKEAWF 662 (751)
Q Consensus 583 ~~g~~~~A~~l~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~ 662 (751)
-.|..++..++..+.... .+..-||.++--....-+-+-..+.++..=+ --|. ..+|++.....
T Consensus 14 ldG~V~qGveii~k~v~S---sni~E~NWvICNiiDaa~C~yvv~~LdsIGk---iFDi----------s~C~NlKrVi~ 77 (161)
T PF09205_consen 14 LDGDVKQGVEIIEKTVNS---SNIKEYNWVICNIIDAADCDYVVETLDSIGK---IFDI----------SKCGNLKRVIE 77 (161)
T ss_dssp HTT-HHHHHHHHHHHHHH---S-HHHHTHHHHHHHHH--HHHHHHHHHHHGG---GS-G----------GG-S-THHHHH
T ss_pred HhchHHHHHHHHHHHcCc---CCccccceeeeecchhhchhHHHHHHHHHhh---hcCc----------hhhcchHHHHH
Confidence 356777777777766654 2444455554443333333333344333322 1111 12333443333
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCC
Q 004470 663 LHKEMVQKGFNLTTSSYNALIKGFLKRKKYLEARELFEEMRRGGLVADREIYYFFVDINFEEGNTEITLELCDAAIECYL 742 (751)
Q Consensus 663 ~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 742 (751)
.+-.+ | .+....+..++.+.++|+-+.-.+++..+.+.+ .++++....++.+|.+.|+..+|-+++.++.++|+
T Consensus 78 C~~~~---n--~~se~vD~ALd~lv~~~kkDqLdki~~~l~kn~-~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~ 151 (161)
T PF09205_consen 78 CYAKR---N--KLSEYVDLALDILVKQGKKDQLDKIYNELKKNE-EINPEFLVKIANAYKKLGNTREANELLKEACEKGL 151 (161)
T ss_dssp HHHHT---T-----HHHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-
T ss_pred HHHHh---c--chHHHHHHHHHHHHHhccHHHHHHHHHHHhhcc-CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhch
Confidence 33222 1 134455566778888999999888888887644 78899999999999999999999999999999986
Q ss_pred C
Q 004470 743 V 743 (751)
Q Consensus 743 ~ 743 (751)
.
T Consensus 152 k 152 (161)
T PF09205_consen 152 K 152 (161)
T ss_dssp H
T ss_pred H
Confidence 3
No 238
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.95 E-value=3.4 Score=45.46 Aligned_cols=108 Identities=13% Similarity=0.161 Sum_probs=72.1
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 004470 608 TYNPLIKQHCLRNDMRTTAKIYKGMCAQGITPDGNTYNILLQGHCKARNMKEAWFLHKEMVQKGFNLTTSSYNALIKGFL 687 (751)
Q Consensus 608 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~ 687 (751)
+.+--+.-+...|+..+|.++-.+.. -||-..|-.-+.++...++|++-.++-+.+. .+.-|...+.+|.
T Consensus 686 Sl~dTv~~li~~g~~k~a~ql~~~Fk----ipdKr~~wLk~~aLa~~~kweeLekfAkskk------sPIGy~PFVe~c~ 755 (829)
T KOG2280|consen 686 SLHDTVTTLILIGQNKRAEQLKSDFK----IPDKRLWWLKLTALADIKKWEELEKFAKSKK------SPIGYLPFVEACL 755 (829)
T ss_pred cHHHHHHHHHHccchHHHHHHHHhcC----CcchhhHHHHHHHHHhhhhHHHHHHHHhccC------CCCCchhHHHHHH
Confidence 34444455567777788877776654 4677777777788888888877666544332 3566777788888
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHH
Q 004470 688 KRKKYLEARELFEEMRRGGLVADREIYYFFVDINFEEGNTEITLELC 734 (751)
Q Consensus 688 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 734 (751)
+.|+.+||.+++-+.. +.. -.+.+|.+.|++.+|.++-
T Consensus 756 ~~~n~~EA~KYiprv~-----~l~----ekv~ay~~~~~~~eAad~A 793 (829)
T KOG2280|consen 756 KQGNKDEAKKYIPRVG-----GLQ----EKVKAYLRVGDVKEAADLA 793 (829)
T ss_pred hcccHHHHhhhhhccC-----ChH----HHHHHHHHhccHHHHHHHH
Confidence 8888888888776642 211 3555777777777776643
No 239
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=95.92 E-value=0.39 Score=51.98 Aligned_cols=119 Identities=13% Similarity=0.118 Sum_probs=82.4
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHH-HHHHHHhcCCHHHHHHHHHHHHHCC---CCCCHHHHHHHHHHHHhcCCHHH
Q 004470 619 RNDMRTTAKIYKGMCAQGITPDGNTYNI-LLQGHCKARNMKEAWFLHKEMVQKG---FNLTTSSYNALIKGFLKRKKYLE 694 (751)
Q Consensus 619 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~-li~~~~~~g~~~~A~~~~~~~~~~~---~~p~~~~~~~l~~~~~~~g~~~~ 694 (751)
..+.+.|.++++.+.+. -|+...|.. -.+.+...|++++|++.|+++.... .......+--+++.+.-.++|++
T Consensus 246 ~~~~~~a~~lL~~~~~~--yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~ 323 (468)
T PF10300_consen 246 DVPLEEAEELLEEMLKR--YPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEE 323 (468)
T ss_pred CCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHH
Confidence 45678888888888874 466555433 3566778889999999988766421 11233456677888888999999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHH-HHHHHHhcCCh-------hHHHHHHHHHHHc
Q 004470 695 ARELFEEMRRGGLVADREIYYF-FVDINFEEGNT-------EITLELCDAAIEC 740 (751)
Q Consensus 695 A~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~g~~-------~~A~~~~~~~~~~ 740 (751)
|.+.|..+.+.. .-...+|.. .+-++...|+. ++|.+++.++-..
T Consensus 324 A~~~f~~L~~~s-~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~l 376 (468)
T PF10300_consen 324 AAEYFLRLLKES-KWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPKL 376 (468)
T ss_pred HHHHHHHHHhcc-ccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHHH
Confidence 999999998854 334444443 33566777888 8888888777543
No 240
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.91 E-value=0.69 Score=43.49 Aligned_cols=208 Identities=13% Similarity=0.115 Sum_probs=103.3
Q ss_pred ChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCccCHHhHHHHHHHHHhCCCCHHHHHHHHHhchhcCCCcCHHHHHHHH
Q 004470 184 DPHVFDIFFQVLVEARKLNEARKLFEKLLNYGLVISVDSCNLFLSRLSNTCDGLRMVVKSFTEFPELGICWNTASYNIMI 263 (751)
Q Consensus 184 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li 263 (751)
....|.--+.+|....++++|...+.++.+. ...+...+ .....++.|.-+.+++... +--+..|+.-.
T Consensus 30 aas~yekAAvafRnAk~feKakdcLlkA~~~-yEnnrslf--------hAAKayEqaamLake~~kl--sEvvdl~eKAs 98 (308)
T KOG1585|consen 30 AASLYEKAAVAFRNAKKFEKAKDCLLKASKG-YENNRSLF--------HAAKAYEQAAMLAKELSKL--SEVVDLYEKAS 98 (308)
T ss_pred hHHHHHHHHHHHHhhccHHHHHHHHHHHHHH-HHhcccHH--------HHHHHHHHHHHHHHHHHHh--HHHHHHHHHHH
Confidence 3455666777888889999999988888743 11111111 1223344455555555443 11233455566
Q ss_pred HHHHhcCCHHHHHHHHHHHHh--cCCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhc
Q 004470 264 HCLCRFGKIKEAHLLLLQMEL--RGCSPDV--VSFSTIINGYCYLGELQRVLKLIEEMQIKGLKPNPYTYNSVVRLLCKT 339 (751)
Q Consensus 264 ~~~~~~g~~~~A~~~~~~m~~--~g~~p~~--~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~ 339 (751)
..|...|..+.|-..+++.-+ .++.|+. ..|..-.......++...|.++ |....+++.+.
T Consensus 99 ~lY~E~GspdtAAmaleKAak~lenv~Pd~AlqlYqralavve~~dr~~ma~el---------------~gk~sr~lVrl 163 (308)
T KOG1585|consen 99 ELYVECGSPDTAAMALEKAAKALENVKPDDALQLYQRALAVVEEDDRDQMAFEL---------------YGKCSRVLVRL 163 (308)
T ss_pred HHHHHhCCcchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhccchHHHHHHH---------------HHHhhhHhhhh
Confidence 677777877777777766433 1233332 1222222222222333333222 33344556666
Q ss_pred CCHHHHHHHHHHHHHCC----CCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC---CCCCHHHHHHHHHHHHhcCC
Q 004470 340 SKVVEAETILREMMNQG----IVPD-NVIYTTLIDGFCKMGNVAAAYRLFDEMRGLN---IIPDLLTYTAIICGFCLTGK 411 (751)
Q Consensus 340 g~~~~A~~~~~~m~~~g----~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~---~~p~~~~~~~li~~~~~~g~ 411 (751)
.++++|-..+.+-.... --++ ...|...|-.|.-..++..|.+.+++-.+.+ -.-+..+...|+.+| ..|+
T Consensus 164 ~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ay-d~gD 242 (308)
T KOG1585|consen 164 EKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAY-DEGD 242 (308)
T ss_pred HHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHh-ccCC
Confidence 66666655444322110 0111 1234455555666667777777776643321 112445555555554 3455
Q ss_pred HHHHHHH
Q 004470 412 MVEAEKL 418 (751)
Q Consensus 412 ~~~A~~~ 418 (751)
.+++..+
T Consensus 243 ~E~~~kv 249 (308)
T KOG1585|consen 243 IEEIKKV 249 (308)
T ss_pred HHHHHHH
Confidence 5555443
No 241
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=95.86 E-value=0.57 Score=50.06 Aligned_cols=89 Identities=19% Similarity=0.171 Sum_probs=56.3
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH-------
Q 004470 465 NVVTYTALADGLCKSGELETANELLHEMCRKGLQLNIYTYNSIVNGLCKAGNILQAVKLMEDMEVAGFHPDTF------- 537 (751)
Q Consensus 465 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~------- 537 (751)
+..+...+...+.+...+.-|.++|..|-+. ..+++.+...+++++|..+-+...+. .||+.
T Consensus 746 ere~l~~~a~ylk~l~~~gLAaeIF~k~gD~---------ksiVqlHve~~~W~eAFalAe~hPe~--~~dVy~pyaqwL 814 (1081)
T KOG1538|consen 746 EREPLLLCATYLKKLDSPGLAAEIFLKMGDL---------KSLVQLHVETQRWDEAFALAEKHPEF--KDDVYMPYAQWL 814 (1081)
T ss_pred hhhHHHHHHHHHhhccccchHHHHHHHhccH---------HHHhhheeecccchHhHhhhhhCccc--cccccchHHHHh
Confidence 4445555555566666777788888777432 34567777888888888887766543 34432
Q ss_pred ----HHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 004470 538 ----TYTTIMDAYCKSGEMVKAHELLRDMLD 564 (751)
Q Consensus 538 ----~~~~li~~~~~~g~~~~A~~~~~~~~~ 564 (751)
-|...-.+|.+.|+-.+|.++++++..
T Consensus 815 AE~DrFeEAqkAfhkAGr~~EA~~vLeQLtn 845 (1081)
T KOG1538|consen 815 AENDRFEEAQKAFHKAGRQREAVQVLEQLTN 845 (1081)
T ss_pred hhhhhHHHHHHHHHHhcchHHHHHHHHHhhh
Confidence 123334466677777777777777654
No 242
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.83 E-value=0.49 Score=41.90 Aligned_cols=125 Identities=11% Similarity=0.006 Sum_probs=70.5
Q ss_pred HHhcCChhHHHHHHHHHHhCCCccCHHhHHHHHHHHHhCCCCHHHHHHHHHhchhcCCCcCHHH---HHHHHHHHHhcCC
Q 004470 195 LVEARKLNEARKLFEKLLNYGLVISVDSCNLFLSRLSNTCDGLRMVVKSFTEFPELGICWNTAS---YNIMIHCLCRFGK 271 (751)
Q Consensus 195 ~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~~---~~~li~~~~~~g~ 271 (751)
+.+.++.++|+.-|..+-+.|...-......-...+....|+...|...|+++-.....|-..- .-.-.-.+...|.
T Consensus 68 lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gs 147 (221)
T COG4649 68 LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGS 147 (221)
T ss_pred HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhcccc
Confidence 4677888888888888877665443333344444444456777777777777766544443321 1111123445666
Q ss_pred HHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004470 272 IKEAHLLLLQMELRGCSPDVVSFSTIINGYCYLGELQRVLKLIEEMQI 319 (751)
Q Consensus 272 ~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 319 (751)
+++.....+.+...+-+--...-..|.-+-.+.|++.+|.++|..+..
T Consensus 148 y~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 148 YDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred HHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 666666665555443322333344455555566666666666666554
No 243
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=95.83 E-value=1.9 Score=44.28 Aligned_cols=33 Identities=21% Similarity=0.197 Sum_probs=15.4
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 004470 409 TGKMVEAEKLFHEMLGRGLEPDEIVYTALIDGY 441 (751)
Q Consensus 409 ~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~ 441 (751)
.|+.++|++++..++...-.++..+|..+++.|
T Consensus 195 ~gdre~Al~il~~~l~~~~~~~~d~~gL~GRIy 227 (374)
T PF13281_consen 195 PGDREKALQILLPVLESDENPDPDTLGLLGRIY 227 (374)
T ss_pred CCCHHHHHHHHHHHHhccCCCChHHHHHHHHHH
Confidence 455555555555543333344444444444443
No 244
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=95.82 E-value=0.37 Score=41.72 Aligned_cols=20 Identities=5% Similarity=0.046 Sum_probs=15.2
Q ss_pred hhHHHHHHHHHHHcCCCCCC
Q 004470 727 TEITLELCDAAIECYLVGKA 746 (751)
Q Consensus 727 ~~~A~~~~~~~~~~~~~~~~ 746 (751)
..+|..-|+++++.++...-
T Consensus 115 ~~~A~~~f~~lv~~yP~S~y 134 (142)
T PF13512_consen 115 ARQAFRDFEQLVRRYPNSEY 134 (142)
T ss_pred HHHHHHHHHHHHHHCcCChh
Confidence 67888888888888776443
No 245
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=95.78 E-value=0.13 Score=53.48 Aligned_cols=65 Identities=11% Similarity=0.017 Sum_probs=57.6
Q ss_pred CCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 004470 604 PNAATYNPLIKQHCLRNDMRTTAKIYKGMCAQGITPDG----NTYNILLQGHCKARNMKEAWFLHKEMVQK 670 (751)
Q Consensus 604 p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~----~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 670 (751)
.+...++.+..+|...|++++|+..|++.++. .|+. .+|..+..+|.+.|+.++|+..++++++.
T Consensus 73 ~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL--~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 73 KTAEDAVNLGLSLFSKGRVKDALAQFETALEL--NPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 35678899999999999999999999999985 5653 35899999999999999999999999986
No 246
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=95.71 E-value=5.7 Score=46.23 Aligned_cols=108 Identities=14% Similarity=0.178 Sum_probs=58.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHH--HHHHHHHH
Q 004470 469 YTALADGLCKSGELETANELLHEMCRKGLQLNIYTYNSIVNGLCKAGNILQAVKLMEDMEVAGFHPDTFT--YTTIMDAY 546 (751)
Q Consensus 469 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~--~~~li~~~ 546 (751)
|.+..+.+...+.+++|.-.|+..-+. .-.+.+|...|++.+|+.+..++.. ..+... -..|+.-+
T Consensus 942 ~~~ya~hL~~~~~~~~Aal~Ye~~Gkl---------ekAl~a~~~~~dWr~~l~~a~ql~~---~~de~~~~a~~L~s~L 1009 (1265)
T KOG1920|consen 942 YEAYADHLREELMSDEAALMYERCGKL---------EKALKAYKECGDWREALSLAAQLSE---GKDELVILAEELVSRL 1009 (1265)
T ss_pred HHHHHHHHHHhccccHHHHHHHHhccH---------HHHHHHHHHhccHHHHHHHHHhhcC---CHHHHHHHHHHHHHHH
Confidence 334444445556666666666554221 1235566667777777777666542 122222 14555666
Q ss_pred HHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHH
Q 004470 547 CKSGEMVKAHELLRDMLDKGLQPSVVTFNVLMNGFCMSGMIEDGEKLLKW 596 (751)
Q Consensus 547 ~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~ 596 (751)
...+++-+|-++..+.... ....+..||+...+++|..+...
T Consensus 1010 ~e~~kh~eAa~il~e~~sd--------~~~av~ll~ka~~~~eAlrva~~ 1051 (1265)
T KOG1920|consen 1010 VEQRKHYEAAKILLEYLSD--------PEEAVALLCKAKEWEEALRVASK 1051 (1265)
T ss_pred HHcccchhHHHHHHHHhcC--------HHHHHHHHhhHhHHHHHHHHHHh
Confidence 6677777776666665532 12234445555666666655443
No 247
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.71 E-value=0.1 Score=50.12 Aligned_cols=103 Identities=10% Similarity=-0.008 Sum_probs=60.8
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHcCCCCCchhhhHHHHHHHHHhhhcCCCChhhHHHHHHHHHhcCChhHHHHHHHHH
Q 004470 132 RCIVVQISVAAKDLKTAHGLIHDFWAKPNLDASIAFTHFVERLIYTYKDWGSDPHVFDIFFQVLVEARKLNEARKLFEKL 211 (751)
Q Consensus 132 ~~~~~~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 211 (751)
.+..+--+..+|+|..|...+..+++.- +..+-.+.++..|+.++..+|++++|..+|..+
T Consensus 144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~Y-------------------P~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~ 204 (262)
T COG1729 144 LYNAALDLYKSGDYAEAEQAFQAFIKKY-------------------PNSTYTPNAYYWLGESLYAQGDYEDAAYIFARV 204 (262)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcC-------------------CCCcccchhHHHHHHHHHhcccchHHHHHHHHH
Confidence 3344444555677777777777776652 222334556677777777777777777777777
Q ss_pred HhC-CCccCHHhHHHHHHHHHhCCCCHHHHHHHHHhchhcCCC
Q 004470 212 LNY-GLVISVDSCNLFLSRLSNTCDGLRMVVKSFTEFPELGIC 253 (751)
Q Consensus 212 ~~~-g~~p~~~~~~~ll~~l~~~~~~~~~a~~~~~~~~~~~~~ 253 (751)
.+. +-.|.......-|+......|+.++|...|+++++.-|.
T Consensus 205 ~k~~P~s~KApdallKlg~~~~~l~~~d~A~atl~qv~k~YP~ 247 (262)
T COG1729 205 VKDYPKSPKAPDALLKLGVSLGRLGNTDEACATLQQVIKRYPG 247 (262)
T ss_pred HHhCCCCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCC
Confidence 654 111222222333444444567777777777777766443
No 248
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=95.62 E-value=2.2 Score=40.87 Aligned_cols=52 Identities=23% Similarity=0.301 Sum_probs=27.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHhcCChhHHHHHH
Q 004470 682 LIKGFLKRKKYLEARELFEEMRRGGLVAD---REIYYFFVDINFEEGNTEITLELC 734 (751)
Q Consensus 682 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~ 734 (751)
+++-|.+.|.+..|..-++.|++. .+.. .+.+..+..+|.+.|-.++|.+.-
T Consensus 173 IaryY~kr~~~~AA~nR~~~v~e~-y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~ 227 (254)
T COG4105 173 IARYYLKRGAYVAAINRFEEVLEN-YPDTSAVREALARLEEAYYALGLTDEAKKTA 227 (254)
T ss_pred HHHHHHHhcChHHHHHHHHHHHhc-cccccchHHHHHHHHHHHHHhCChHHHHHHH
Confidence 344555666666666666666653 2222 233334445566666666665543
No 249
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=95.56 E-value=1.1 Score=37.79 Aligned_cols=59 Identities=20% Similarity=0.151 Sum_probs=26.2
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 004470 613 IKQHCLRNDMRTTAKIYKGMCAQGITPDGNTYNILLQGHCKARNMKEAWFLHKEMVQKGF 672 (751)
Q Consensus 613 ~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~ 672 (751)
+..+..+|+-++-.+++.++.+. -.+++...-.+..+|.+.|+..+|-+++.++-++|.
T Consensus 93 Ld~lv~~~kkDqLdki~~~l~kn-~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~ 151 (161)
T PF09205_consen 93 LDILVKQGKKDQLDKIYNELKKN-EEINPEFLVKIANAYKKLGNTREANELLKEACEKGL 151 (161)
T ss_dssp HHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-
T ss_pred HHHHHHhccHHHHHHHHHHHhhc-cCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhch
Confidence 34444555555555555554432 134445555555555555555555555555555543
No 250
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=95.55 E-value=0.27 Score=41.22 Aligned_cols=96 Identities=18% Similarity=0.097 Sum_probs=72.7
Q ss_pred HHHHHHhcCChHHHHHHHHHHHcCCCCCchhhhHHHHHHHHHhhhcCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 004470 135 VVQISVAAKDLKTAHGLIHDFWAKPNLDASIAFTHFVERLIYTYKDWGSDPHVFDIFFQVLVEARKLNEARKLFEKLLNY 214 (751)
Q Consensus 135 ~~~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 214 (751)
-+-.+...|+++.|...+.+.+... |.++++|+.-++++.-+|+.++|++-++++++.
T Consensus 49 ~~valaE~g~Ld~AlE~F~qal~l~----------------------P~raSayNNRAQa~RLq~~~e~ALdDLn~AleL 106 (175)
T KOG4555|consen 49 KAIALAEAGDLDGALELFGQALCLA----------------------PERASAYNNRAQALRLQGDDEEALDDLNKALEL 106 (175)
T ss_pred HHHHHHhccchHHHHHHHHHHHHhc----------------------ccchHhhccHHHHHHHcCChHHHHHHHHHHHHh
Confidence 3456677899999999998877543 788999999999999999999999999999875
Q ss_pred CCccCHHhHHHHH--HHHHhCCCCHHHHHHHHHhchhcCC
Q 004470 215 GLVISVDSCNLFL--SRLSNTCDGLRMVVKSFTEFPELGI 252 (751)
Q Consensus 215 g~~p~~~~~~~ll--~~l~~~~~~~~~a~~~~~~~~~~~~ 252 (751)
.-.-....|.... +.+++..|+-+.|+.-|+.+.+.|-
T Consensus 107 ag~~trtacqa~vQRg~lyRl~g~dd~AR~DFe~AA~LGS 146 (175)
T KOG4555|consen 107 AGDQTRTACQAFVQRGLLYRLLGNDDAARADFEAAAQLGS 146 (175)
T ss_pred cCccchHHHHHHHHHHHHHHHhCchHHHHHhHHHHHHhCC
Confidence 2222333443332 3455566888888888888877763
No 251
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=95.48 E-value=0.064 Score=54.23 Aligned_cols=71 Identities=18% Similarity=0.113 Sum_probs=63.3
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCc
Q 004470 676 TSSYNALIKGFLKRKKYLEARELFEEMRRGGLVADREIYYFFVDINFEEGNTEITLELCDAAIECYLVGKAT 747 (751)
Q Consensus 676 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 747 (751)
...++.+.-+|.+.+++.+|++..++.++.+ ++|....+.-+.++...|+++.|+..|+++++..+..+.+
T Consensus 257 ~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~-~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~ 327 (397)
T KOG0543|consen 257 LACHLNLAACYLKLKEYKEAIESCNKVLELD-PNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAA 327 (397)
T ss_pred HHHhhHHHHHHHhhhhHHHHHHHHHHHHhcC-CCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHH
Confidence 3467788889999999999999999999986 7888889999999999999999999999999988766543
No 252
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=95.46 E-value=0.8 Score=47.88 Aligned_cols=23 Identities=9% Similarity=0.283 Sum_probs=10.1
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHH
Q 004470 330 NSVVRLLCKTSKVVEAETILREM 352 (751)
Q Consensus 330 ~~li~~~~~~g~~~~A~~~~~~m 352 (751)
..|+.++...+.+.++..++.+-
T Consensus 299 enLie~LLelq~Yad~q~lL~kY 321 (539)
T PF04184_consen 299 ENLIEALLELQAYADVQALLAKY 321 (539)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHh
Confidence 33444444444444444444443
No 253
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=95.44 E-value=0.032 Score=37.63 Aligned_cols=41 Identities=15% Similarity=0.110 Sum_probs=33.1
Q ss_pred hhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCccCHHhHHHHH
Q 004470 185 PHVFDIFFQVLVEARKLNEARKLFEKLLNYGLVISVDSCNLFL 227 (751)
Q Consensus 185 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll 227 (751)
|.++..|+.+|.+.|++++|.++|+++++. .|+....-..+
T Consensus 1 p~~~~~la~~~~~~G~~~~A~~~~~~~l~~--~P~~~~a~~~L 41 (44)
T PF13428_consen 1 PAAWLALARAYRRLGQPDEAERLLRRALAL--DPDDPEAWRAL 41 (44)
T ss_pred CHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CcCCHHHHHHh
Confidence 356788999999999999999999999987 67765444333
No 254
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=95.40 E-value=2.6 Score=40.25 Aligned_cols=200 Identities=19% Similarity=0.079 Sum_probs=79.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH-
Q 004470 467 VTYTALADGLCKSGELETANELLHEMCRK-GLQLNIYTYNSIVNGLCKAGNILQAVKLMEDMEVAGFHPDTFTYTTIMD- 544 (751)
Q Consensus 467 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~-g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~- 544 (751)
..+......+...+++..+...+...... ........+......+...++...+...+.........+ .........
T Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 138 (291)
T COG0457 60 GLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDP-DLAEALLALG 138 (291)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCc-chHHHHHHHH
Confidence 34444444444455555554444444331 112233334444444444444455555555444332111 111111111
Q ss_pred HHHHcCCHHHHHHHHHHHHhCCC--CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHHcCCH
Q 004470 545 AYCKSGEMVKAHELLRDMLDKGL--QPSVVTFNVLMNGFCMSGMIEDGEKLLKWMLEKGLKPNAATYNPLIKQHCLRNDM 622 (751)
Q Consensus 545 ~~~~~g~~~~A~~~~~~~~~~~~--~p~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~g~~p~~~~~~~l~~~~~~~g~~ 622 (751)
.+...|+++.|...+.+...... ......+......+...++.+.|...+..............+..+...+...++.
T Consensus 139 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (291)
T COG0457 139 ALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGKY 218 (291)
T ss_pred HHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHcccH
Confidence 34445555555555554433110 0112222222223334445555555555444431110233444444444444455
Q ss_pred HHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004470 623 RTTAKIYKGMCAQGITPD-GNTYNILLQGHCKARNMKEAWFLHKEMVQ 669 (751)
Q Consensus 623 ~~A~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 669 (751)
+.|...+...... .|+ ...+..+...+...+..+++...+.+...
T Consensus 219 ~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (291)
T COG0457 219 EEALEYYEKALEL--DPDNAEALYNLALLLLELGRYEEALEALEKALE 264 (291)
T ss_pred HHHHHHHHHHHhh--CcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHH
Confidence 5555555544442 122 22222222333334444555544444444
No 255
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=95.39 E-value=4.9 Score=43.29 Aligned_cols=180 Identities=15% Similarity=0.142 Sum_probs=88.7
Q ss_pred CHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 004470 430 DEIVYTALIDGYCKAGGMKKAFSLHNNMVHMRLTPNVVTYTALADGLCKSGELETANELLHEMCRKGLQLNIYTYNSIVN 509 (751)
Q Consensus 430 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~~~~li~ 509 (751)
+..+|..-+..-.+.|+.+.+.-+|++..-- +..=...|-..+......|+.+-|..++....+--++-.+.+ ..+-.
T Consensus 296 ql~nw~~yLdf~i~~g~~~~~~~l~ercli~-cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i-~L~~a 373 (577)
T KOG1258|consen 296 QLKNWRYYLDFEITLGDFSRVFILFERCLIP-CALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPII-HLLEA 373 (577)
T ss_pred HHHHHHHHhhhhhhcccHHHHHHHHHHHHhH-HhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHH-HHHHH
Confidence 3456777777777788888888877776531 111223344444444445777777766666555433322222 22222
Q ss_pred H-HHHcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHHcCCHHHHH---HHHHHHHhCCCCCCHHHHHHHHHHHH--
Q 004470 510 G-LCKAGNILQAVKLMEDMEVAGFHPDTF-TYTTIMDAYCKSGEMVKAH---ELLRDMLDKGLQPSVVTFNVLMNGFC-- 582 (751)
Q Consensus 510 ~-~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~li~~~~~~g~~~~A~---~~~~~~~~~~~~p~~~~~~~li~~~~-- 582 (751)
. .-..|+++.|..+++.+...- |+.+ .-..-+....+.|+.+.+. +++....+. .-+......+.--+.
T Consensus 374 ~f~e~~~n~~~A~~~lq~i~~e~--pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~--~~~~~i~~~l~~~~~r~ 449 (577)
T KOG1258|consen 374 RFEESNGNFDDAKVILQRIESEY--PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEG--KENNGILEKLYVKFARL 449 (577)
T ss_pred HHHHhhccHHHHHHHHHHHHhhC--CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhccc--ccCcchhHHHHHHHHHH
Confidence 2 233567777777777776652 4322 2222333445566666665 222222221 112122222221111
Q ss_pred ---hcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHH
Q 004470 583 ---MSGMIEDGEKLLKWMLEKGLKPNAATYNPLIKQH 616 (751)
Q Consensus 583 ---~~g~~~~A~~l~~~~~~~g~~p~~~~~~~l~~~~ 616 (751)
-.++.+.|..++.++.+. .+++...|..+++..
T Consensus 450 ~~~i~~d~~~a~~~l~~~~~~-~~~~k~~~~~~~~~~ 485 (577)
T KOG1258|consen 450 RYKIREDADLARIILLEANDI-LPDCKVLYLELIRFE 485 (577)
T ss_pred HHHHhcCHHHHHHHHHHhhhc-CCccHHHHHHHHHHH
Confidence 235566666666666554 333444555555443
No 256
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=95.30 E-value=2.5 Score=41.33 Aligned_cols=152 Identities=13% Similarity=0.040 Sum_probs=83.3
Q ss_pred HHhcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 004470 581 FCMSGMIEDGEKLLKWMLEKGLKPNAATYNPLIKQHCLRNDMRTTAKIYKGMCAQGITPDGNTYNILLQGHCKARNMKEA 660 (751)
Q Consensus 581 ~~~~g~~~~A~~l~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A 660 (751)
....|+..+|..+|+........ +...-..++.+|...|+.+.|..++..+-...-.........-+..+.+.....+.
T Consensus 144 ~~~~e~~~~a~~~~~~al~~~~~-~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~~~ 222 (304)
T COG3118 144 LIEAEDFGEAAPLLKQALQAAPE-NSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATPEI 222 (304)
T ss_pred hhhccchhhHHHHHHHHHHhCcc-cchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCCCH
Confidence 34556666666666666654222 23444455666666666666666666544321111111222233444444444444
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHhcCChhHHHHHHH
Q 004470 661 WFLHKEMVQKGFNLTTSSYNALIKGFLKRKKYLEARELFEEMRRGGL-VADREIYYFFVDINFEEGNTEITLELCD 735 (751)
Q Consensus 661 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 735 (751)
..+-.+.-. ++. |...-..+...+...|+.++|.+.+-.+++++. ..|......++..+.--|..+.+..-+.
T Consensus 223 ~~l~~~~aa-dPd-d~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g~~Dp~~~~~R 296 (304)
T COG3118 223 QDLQRRLAA-DPD-DVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFGPADPLVLAYR 296 (304)
T ss_pred HHHHHHHHh-CCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcCCCCHHHHHHH
Confidence 444333332 232 666667777778888888888887777766422 3355666677777776665555444333
No 257
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=95.15 E-value=2.3 Score=41.56 Aligned_cols=57 Identities=18% Similarity=0.223 Sum_probs=29.8
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCCCccCHHhHHHHHHHHHhCCCCHHHHHHHHHhchhc
Q 004470 192 FQVLVEARKLNEARKLFEKLLNYGLVISVDSCNLFLSRLSNTCDGLRMVVKSFTEFPEL 250 (751)
Q Consensus 192 ~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~l~~~~~~~~~a~~~~~~~~~~ 250 (751)
+......|++.+|...|..+... .|........+..++...|+.+.|..++..+...
T Consensus 141 ~~~~~~~e~~~~a~~~~~~al~~--~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~ 197 (304)
T COG3118 141 AKELIEAEDFGEAAPLLKQALQA--APENSEAKLLLAECLLAAGDVEAAQAILAALPLQ 197 (304)
T ss_pred hhhhhhccchhhHHHHHHHHHHh--CcccchHHHHHHHHHHHcCChHHHHHHHHhCccc
Confidence 33445566666666666666654 3433333334444444455555555555555443
No 258
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.10 E-value=0.99 Score=40.07 Aligned_cols=138 Identities=10% Similarity=0.067 Sum_probs=78.0
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhh-HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHH-HHHH-
Q 004470 571 VVTFNVLMNGFCMSGMIEDGEKLLKWMLEKGLKPNAAT-YNPLIKQHCLRNDMRTTAKIYKGMCAQGITPDGNT-YNIL- 647 (751)
Q Consensus 571 ~~~~~~li~~~~~~g~~~~A~~l~~~~~~~g~~p~~~~-~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~-~~~l- 647 (751)
...|...++ +.+.+..++|+.-|..+.+.|...-... -..........|+...|...|+++-.....|-..- ...|
T Consensus 59 gd~flaAL~-lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlr 137 (221)
T COG4649 59 GDAFLAALK-LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLR 137 (221)
T ss_pred hHHHHHHHH-HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHH
Confidence 344444443 3566777888888888877654421111 11222335677778888888877766433343221 1111
Q ss_pred -HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 004470 648 -LQGHCKARNMKEAWFLHKEMVQKGFNLTTSSYNALIKGFLKRKKYLEARELFEEMRRGGLVA 709 (751)
Q Consensus 648 -i~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 709 (751)
...+...|.+++.....+.+-..+-+.-...-..|.-+-.+.|++.+|.+.|+.+.+....|
T Consensus 138 aa~lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~Da~ap 200 (221)
T COG4649 138 AAYLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIANDAQAP 200 (221)
T ss_pred HHHHHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHccccCc
Confidence 22345677777776666665544333233445566666677788888887777776643333
No 259
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=94.78 E-value=2.5 Score=37.12 Aligned_cols=125 Identities=15% Similarity=0.156 Sum_probs=73.7
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhc
Q 004470 260 NIMIHCLCRFGKIKEAHLLLLQMELRGCSPDVVSFSTIINGYCYLGELQRVLKLIEEMQIKGLKPNPYTYNSVVRLLCKT 339 (751)
Q Consensus 260 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~ 339 (751)
..++..+.+.+.......+++.+...+. .+...++.++..|++.+ .++.++.+.. ..+.+....+++.|.+.
T Consensus 11 ~~vv~~~~~~~~~~~l~~yLe~~~~~~~-~~~~~~~~li~ly~~~~-~~~ll~~l~~------~~~~yd~~~~~~~c~~~ 82 (140)
T smart00299 11 SEVVELFEKRNLLEELIPYLESALKLNS-ENPALQTKLIELYAKYD-PQKEIERLDN------KSNHYDIEKVGKLCEKA 82 (140)
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHccCc-cchhHHHHHHHHHHHHC-HHHHHHHHHh------ccccCCHHHHHHHHHHc
Confidence 4566667777778888888887776653 56667778888887653 3334444442 12445555667777777
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 004470 340 SKVVEAETILREMMNQGIVPDNVIYTTLIDGFCKM-GNVAAAYRLFDEMRGLNIIPDLLTYTAIICGFC 407 (751)
Q Consensus 340 g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~-g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~ 407 (751)
+.++++.-++.++.. +...+..+.+. ++++.|.+.+.+- .+...|..++..+.
T Consensus 83 ~l~~~~~~l~~k~~~---------~~~Al~~~l~~~~d~~~a~~~~~~~------~~~~lw~~~~~~~l 136 (140)
T smart00299 83 KLYEEAVELYKKDGN---------FKDAIVTLIEHLGNYEKAIEYFVKQ------NNPELWAEVLKALL 136 (140)
T ss_pred CcHHHHHHHHHhhcC---------HHHHHHHHHHcccCHHHHHHHHHhC------CCHHHHHHHHHHHH
Confidence 777777777665422 12222333333 6677777766542 14455666655443
No 260
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=94.78 E-value=3.4 Score=38.27 Aligned_cols=27 Identities=19% Similarity=0.400 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHH
Q 004470 712 EIYYFFVDINFEEGNTEITLELCDAAI 738 (751)
Q Consensus 712 ~~~~~l~~~~~~~g~~~~A~~~~~~~~ 738 (751)
++|..++.-+...|+.++|..+|+-++
T Consensus 238 EtyFYL~K~~l~~G~~~~A~~LfKLai 264 (297)
T COG4785 238 ETYFYLGKYYLSLGDLDEATALFKLAV 264 (297)
T ss_pred HHHHHHHHHHhccccHHHHHHHHHHHH
Confidence 455556666666666666666665544
No 261
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.57 E-value=9.2 Score=42.29 Aligned_cols=344 Identities=15% Similarity=0.078 Sum_probs=180.6
Q ss_pred CCCCCcccHH-----HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC--HHHHHHHHHHHHhCCCC
Q 004470 321 GLKPNPYTYN-----SVVRLLCKTSKVVEAETILREMMNQGIVPDNVIYTTLIDGFCKMGN--VAAAYRLFDEMRGLNII 393 (751)
Q Consensus 321 g~~p~~~~~~-----~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~--~~~A~~~~~~m~~~~~~ 393 (751)
|++.+..-|. .+|+-+...+.+..|+++-.-+...-.. ...+|.....-+.+..+ -+++.+..++=.+...
T Consensus 427 gIplT~~qy~~l~~~~vi~Rl~~r~~Y~vaIQva~~l~~p~~~-~~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~~~- 504 (829)
T KOG2280|consen 427 GIPLTHEQYRHLSEEVVIDRLVDRHLYSVAIQVAKLLNLPESQ-GDRVLLEWARRKIKQSDKMDEEVLDKIDEKLSAKL- 504 (829)
T ss_pred CccccHHHHhhhchhhhhHHHHhcchhHHHHHHHHHhCCcccc-ccHHHHHHHHHHHhccCccchHHHHHHHHHhcccC-
Confidence 5555544444 3566677788888888887766543212 15566666666666532 2223333332222212
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC----CHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHH
Q 004470 394 PDLLTYTAIICGFCLTGKMVEAEKLFHEMLGRGLEP----DEIVYTALIDGYCKAGGMKKAFSLHNNMVHMRLTPNVVTY 469 (751)
Q Consensus 394 p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p----~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 469 (751)
-...+|..+..-....|+.+-|..+++.=...+... +..-+...+.-..+.|+.+-...++-.+... .+...+
T Consensus 505 ~~~iSy~~iA~~Ay~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~---~~~s~l 581 (829)
T KOG2280|consen 505 TPGISYAAIARRAYQEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNK---LNRSSL 581 (829)
T ss_pred CCceeHHHHHHHHHhcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHH---HHHHHH
Confidence 245667777777778888888887765322111000 0011122233333444444444433333321 011111
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH-H-HHCC-CCCCHHHHHHHHHHH
Q 004470 470 TALADGLCKSGELETANELLHEMCRKGLQLNIYTYNSIVNGLCKAGNILQAVKLMED-M-EVAG-FHPDTFTYTTIMDAY 546 (751)
Q Consensus 470 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~-~-~~~~-~~~~~~~~~~li~~~ 546 (751)
. .-..+...|..+|.+..++. |..+ +..+..+++-.++...+.. - .+.. +.+-..........+
T Consensus 582 ~------~~l~~~p~a~~lY~~~~r~~---~~~~----l~d~y~q~dn~~~~a~~~~q~~~~~~~~~~r~~~lk~~a~~~ 648 (829)
T KOG2280|consen 582 F------MTLRNQPLALSLYRQFMRHQ---DRAT----LYDFYNQDDNHQALASFHLQASYAAETIEGRIPALKTAANAF 648 (829)
T ss_pred H------HHHHhchhhhHHHHHHHHhh---chhh----hhhhhhcccchhhhhhhhhhhhhhhhhhcccchhHHHHHHHH
Confidence 1 11123344555555554431 1111 1112223322222222211 0 0000 111222233334444
Q ss_pred HHcCCH----------HHHHHHHHHHHh-CCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHH
Q 004470 547 CKSGEM----------VKAHELLRDMLD-KGLQPSVVTFNVLMNGFCMSGMIEDGEKLLKWMLEKGLKPNAATYNPLIKQ 615 (751)
Q Consensus 547 ~~~g~~----------~~A~~~~~~~~~-~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~g~~p~~~~~~~l~~~ 615 (751)
.+.... .+-+.+.+.+.. .|..-...+.+--+.-+...|+..+|.++-.+.. -||...|-.-+.+
T Consensus 649 a~sk~~s~e~ka~ed~~kLl~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fk----ipdKr~~wLk~~a 724 (829)
T KOG2280|consen 649 AKSKEKSFEAKALEDQMKLLKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFK----IPDKRLWWLKLTA 724 (829)
T ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHHHhccccccCcHHHHHHHHHHccchHHHHHHHHhcC----CcchhhHHHHHHH
Confidence 443331 111222223321 1222233344555566677899999998887764 5788899999999
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 004470 616 HCLRNDMRTTAKIYKGMCAQGITPDGNTYNILLQGHCKARNMKEAWFLHKEMVQKGFNLTTSSYNALIKGFLKRKKYLEA 695 (751)
Q Consensus 616 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A 695 (751)
++..+++++-+++-+.+. .+.-|.-.+..|.+.|+.+||.+++.+.-. .. ..+.+|.+.|++.+|
T Consensus 725 La~~~kweeLekfAkskk------sPIGy~PFVe~c~~~~n~~EA~KYiprv~~-----l~----ekv~ay~~~~~~~eA 789 (829)
T KOG2280|consen 725 LADIKKWEELEKFAKSKK------SPIGYLPFVEACLKQGNKDEAKKYIPRVGG-----LQ----EKVKAYLRVGDVKEA 789 (829)
T ss_pred HHhhhhHHHHHHHHhccC------CCCCchhHHHHHHhcccHHHHhhhhhccCC-----hH----HHHHHHHHhccHHHH
Confidence 999999998877766543 245567788899999999999998876421 11 567889999999999
Q ss_pred HHHHHH
Q 004470 696 RELFEE 701 (751)
Q Consensus 696 ~~~~~~ 701 (751)
.+..-+
T Consensus 790 ad~A~~ 795 (829)
T KOG2280|consen 790 ADLAAE 795 (829)
T ss_pred HHHHHH
Confidence 886544
No 262
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=94.50 E-value=0.13 Score=34.55 Aligned_cols=39 Identities=18% Similarity=0.173 Sum_probs=21.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 004470 678 SYNALIKGFLKRKKYLEARELFEEMRRGGLVADREIYYFF 717 (751)
Q Consensus 678 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 717 (751)
++..+...|...|++++|+++|+++++.. |.|...+..+
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~~-P~~~~a~~~L 41 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALALD-PDDPEAWRAL 41 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCCHHHHHHh
Confidence 44555556666666666666666665542 3344444433
No 263
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=94.47 E-value=0.65 Score=39.77 Aligned_cols=96 Identities=14% Similarity=0.147 Sum_probs=61.3
Q ss_pred CHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 004470 605 NAATYNPLIKQHCLRNDMRTTAKIYKGMCAQGITPDGNTYNILLQGHCKARNMKEAWFLHKEMVQKGFNLTTSSYNALIK 684 (751)
Q Consensus 605 ~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~ 684 (751)
|..++..++.++++.|+++....+.+..- |+.++... ..+. --......|+..+..+++.
T Consensus 1 de~~~~~ii~al~r~g~~~~i~~~i~~~W--gI~~~~~~---------~~~~---------~~~~spl~Pt~~lL~AIv~ 60 (126)
T PF12921_consen 1 DEELLCNIIYALGRSGQLDSIKSYIKSVW--GIDVNGKK---------KEGD---------YPPSSPLYPTSRLLIAIVH 60 (126)
T ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHHhc--CCCCCCcc---------ccCc---------cCCCCCCCCCHHHHHHHHH
Confidence 34566777777777777777776665443 22222110 0000 0112345678888888888
Q ss_pred HHHhcCCHHHHHHHHHHHHH-CCCCCCHHHHHHHHHH
Q 004470 685 GFLKRKKYLEARELFEEMRR-GGLVADREIYYFFVDI 720 (751)
Q Consensus 685 ~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~~l~~~ 720 (751)
+|+..|++..|.++++...+ .+++-+..+|..|..-
T Consensus 61 sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W 97 (126)
T PF12921_consen 61 SFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEW 97 (126)
T ss_pred HHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 88888888888888888766 5677677788777743
No 264
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=94.45 E-value=3.6 Score=41.20 Aligned_cols=228 Identities=11% Similarity=0.029 Sum_probs=116.7
Q ss_pred HHHcCChhHHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCCCCH---HHHHHHHHHHHH
Q 004470 441 YCKAGGMKKAFSLHNNMVHMR--LTPNVVTYTALADGLCKSGELETANELLHEMCRK--GLQLNI---YTYNSIVNGLCK 513 (751)
Q Consensus 441 ~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~--g~~~~~---~~~~~li~~~~~ 513 (751)
+....+.++|+..+.+.+..- ..-...++..+..+.++.|.+++++..--.-++- ...-.. ..|..+..++-+
T Consensus 16 Ly~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnlar~~e~ 95 (518)
T KOG1941|consen 16 LYQSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNLARSNEK 95 (518)
T ss_pred HhcCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356778888988888776541 1112346777778888888888776543222111 011111 122333333333
Q ss_pred cCCHHHHHHHHHHHHH-CCCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCC---C--CCHHHHHHHHHHHHhc
Q 004470 514 AGNILQAVKLMEDMEV-AGFHP---DTFTYTTIMDAYCKSGEMVKAHELLRDMLDKGL---Q--PSVVTFNVLMNGFCMS 584 (751)
Q Consensus 514 ~g~~~~A~~~~~~~~~-~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~---~--p~~~~~~~li~~~~~~ 584 (751)
.-++.+++.+-.--.. .|..| .-....++..+....+.++++++.|+...+.-- . .....+-.|...|.+.
T Consensus 96 l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l 175 (518)
T KOG1941|consen 96 LCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQL 175 (518)
T ss_pred HHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHH
Confidence 3344444443332221 11111 112233355566666777778777777653210 1 1224566777777777
Q ss_pred CChhHHHHHHHHHHHc----CCCCCHhhHHH-----HHHHHHHcCCHHHHHHHHHHHHH----CCCCC-CHHHHHHHHHH
Q 004470 585 GMIEDGEKLLKWMLEK----GLKPNAATYNP-----LIKQHCLRNDMRTTAKIYKGMCA----QGITP-DGNTYNILLQG 650 (751)
Q Consensus 585 g~~~~A~~l~~~~~~~----g~~p~~~~~~~-----l~~~~~~~g~~~~A~~~~~~m~~----~g~~p-~~~~~~~li~~ 650 (751)
.++++|.-+..+..+. ++..-..-|.. +.-++-..|++..|.+.-++..+ .|-.+ -......+.+.
T Consensus 176 ~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDI 255 (518)
T KOG1941|consen 176 KDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADI 255 (518)
T ss_pred HhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHH
Confidence 7777777766655432 22211112222 22335556666666666555443 33222 12234455666
Q ss_pred HHhcCCHHHHHHHHHHHH
Q 004470 651 HCKARNMKEAWFLHKEMV 668 (751)
Q Consensus 651 ~~~~g~~~~A~~~~~~~~ 668 (751)
|...|+.+.|+.-|+++.
T Consensus 256 yR~~gd~e~af~rYe~Am 273 (518)
T KOG1941|consen 256 YRSRGDLERAFRRYEQAM 273 (518)
T ss_pred HHhcccHhHHHHHHHHHH
Confidence 667777777776666554
No 265
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=94.44 E-value=6 Score=39.60 Aligned_cols=164 Identities=12% Similarity=0.085 Sum_probs=87.2
Q ss_pred HHHHHHHHHHHhcCChh---HHHHHHHHHHHcCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 004470 572 VTFNVLMNGFCMSGMIE---DGEKLLKWMLEKGLKPNAATYNPLIKQHCLRNDMRTTAKIYKGMCAQGITPDGNTYNILL 648 (751)
Q Consensus 572 ~~~~~li~~~~~~g~~~---~A~~l~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li 648 (751)
.++..++.+|...+..+ +|..+++.+...... ...++..-+..+.+.++.+++.+.+.+|+..- .-....+...+
T Consensus 85 ~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~-~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~-~~~e~~~~~~l 162 (278)
T PF08631_consen 85 SILRLLANAYLEWDTYESVEKALNALRLLESEYGN-KPEVFLLKLEILLKSFDEEEYEEILMRMIRSV-DHSESNFDSIL 162 (278)
T ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCC-CcHHHHHHHHHHhccCChhHHHHHHHHHHHhc-ccccchHHHHH
Confidence 35667777777766544 455566666544221 24444455556656788888888888888752 21222333333
Q ss_pred HHH---HhcCCHHHHHHHHHHHHHCCCCCCHHHHH-----HHHHHHHhcCC------HHHHHHHHHHHHH-CCCCCCHHH
Q 004470 649 QGH---CKARNMKEAWFLHKEMVQKGFNLTTSSYN-----ALIKGFLKRKK------YLEARELFEEMRR-GGLVADREI 713 (751)
Q Consensus 649 ~~~---~~~g~~~~A~~~~~~~~~~~~~p~~~~~~-----~l~~~~~~~g~------~~~A~~~~~~~~~-~~~~~~~~~ 713 (751)
..+ .. .....|...++.++...+.|....|. ..+......++ .+...++++...+ .+.+.+..+
T Consensus 163 ~~i~~l~~-~~~~~a~~~ld~~l~~r~~~~~~~~~e~~vl~~~~~~~~~~~~~~~~~i~~l~~~~~~v~~~~~~~ls~~~ 241 (278)
T PF08631_consen 163 HHIKQLAE-KSPELAAFCLDYLLLNRFKSSEDQWLEKLVLTRVLLTTQSKDLSSSEKIESLEELLSIVEHSLGKQLSAEA 241 (278)
T ss_pred HHHHHHHh-hCcHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHcCCccccchhHHHHHHHHHHHHHHHhcCCCCHHH
Confidence 333 33 33456667776666554554443111 11111222222 4444455553333 222333333
Q ss_pred HH---HH----HHHHHhcCChhHHHHHHHHHH
Q 004470 714 YY---FF----VDINFEEGNTEITLELCDAAI 738 (751)
Q Consensus 714 ~~---~l----~~~~~~~g~~~~A~~~~~~~~ 738 (751)
-. .+ +...++.+++++|.++|+-++
T Consensus 242 ~~a~~~LLW~~~~~~~~~k~y~~A~~w~~~al 273 (278)
T PF08631_consen 242 ASAIHTLLWNKGKKHYKAKNYDEAIEWYELAL 273 (278)
T ss_pred HHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHH
Confidence 22 22 346788999999999998665
No 266
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=94.39 E-value=0.7 Score=39.58 Aligned_cols=80 Identities=15% Similarity=0.225 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHh---------------CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-
Q 004470 362 VIYTTLIDGFCKMGNVAAAYRLFDEMRG---------------LNIIPDLLTYTAIICGFCLTGKMVEAEKLFHEMLGR- 425 (751)
Q Consensus 362 ~~~~~li~~~~~~g~~~~A~~~~~~m~~---------------~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~- 425 (751)
.++..+|.++++.|+++....+++..-. ....|+..+..+++.+|+.+|++..|+++++...+.
T Consensus 3 ~~~~~ii~al~r~g~~~~i~~~i~~~WgI~~~~~~~~~~~~~~spl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y 82 (126)
T PF12921_consen 3 ELLCNIIYALGRSGQLDSIKSYIKSVWGIDVNGKKKEGDYPPSSPLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKY 82 (126)
T ss_pred HHHHHHHHHHhhcCCHHHHHHHHHHhcCCCCCCccccCccCCCCCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHc
Confidence 3444555555555555555555443321 123345555555555555555555555555554443
Q ss_pred CCCCCHHHHHHHHHHH
Q 004470 426 GLEPDEIVYTALIDGY 441 (751)
Q Consensus 426 ~~~p~~~~~~~li~~~ 441 (751)
+++.+..+|..|+.-.
T Consensus 83 ~I~i~~~~W~~Ll~W~ 98 (126)
T PF12921_consen 83 PIPIPKEFWRRLLEWA 98 (126)
T ss_pred CCCCCHHHHHHHHHHH
Confidence 3333444555544433
No 267
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=94.39 E-value=1.7 Score=37.69 Aligned_cols=78 Identities=13% Similarity=0.035 Sum_probs=52.5
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcC
Q 004470 263 IHCLCRFGKIKEAHLLLLQMELRGC--SPDVVSFSTIINGYCYLGELQRVLKLIEEMQIKGLKPNPYTYNSVVRLLCKTS 340 (751)
Q Consensus 263 i~~~~~~g~~~~A~~~~~~m~~~g~--~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g 340 (751)
.....+.|++++|.+.|+.+..+-. .-...+.-.++.+|.+.|++++|...+++.++....-....|...+.+++...
T Consensus 17 a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~~~~ 96 (142)
T PF13512_consen 17 AQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLSYYE 96 (142)
T ss_pred HHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHHHHH
Confidence 3345678888888888888876521 11234555677888888888888888888887754434455666666665433
No 268
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=94.38 E-value=8 Score=43.04 Aligned_cols=46 Identities=20% Similarity=0.174 Sum_probs=26.9
Q ss_pred ChhHHHHHHHHHHhCCCCCCHHHHHHHHHH-----HHhcCCHHHHHHHHHHHHH
Q 004470 446 GMKKAFSLHNNMVHMRLTPNVVTYTALADG-----LCKSGELETANELLHEMCR 494 (751)
Q Consensus 446 ~~~~A~~~~~~~~~~~~~~~~~~~~~li~~-----~~~~g~~~~A~~l~~~m~~ 494 (751)
+...|..+++...+.| +......+... +....+.+.|+..++.+.+
T Consensus 227 ~~~~a~~~~~~~a~~g---~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~ 277 (552)
T KOG1550|consen 227 ELSEAFKYYREAAKLG---HSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAE 277 (552)
T ss_pred hhhHHHHHHHHHHhhc---chHHHHHHHHHHhhccccccccHHHHHHHHHHHHH
Confidence 3566777777777665 33333333322 3345667777777777765
No 269
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=94.37 E-value=12 Score=42.57 Aligned_cols=143 Identities=14% Similarity=0.074 Sum_probs=84.9
Q ss_pred HHHHHhcCChHHHHHHHHHHHcCCCCCchhhhHHHHHHHHHhhhcCC-----CChhhHHHHHHHHHhcCChhHHHHHHHH
Q 004470 136 VQISVAAKDLKTAHGLIHDFWAKPNLDASIAFTHFVERLIYTYKDWG-----SDPHVFDIFFQVLVEARKLNEARKLFEK 210 (751)
Q Consensus 136 ~~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-----~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 210 (751)
++...++|+++.|..++++.-.. -.+ ..-+..+.......| ++|..-..-+.....+.++++|..+..+
T Consensus 367 I~hAlaA~d~~~aa~lle~~~~~-L~~-----~~~lsll~~~~~~lP~~~l~~~P~Lvll~aW~~~s~~r~~ea~~li~~ 440 (894)
T COG2909 367 IDHALAAGDPEMAADLLEQLEWQ-LFN-----GSELSLLLAWLKALPAELLASTPRLVLLQAWLLASQHRLAEAETLIAR 440 (894)
T ss_pred HHHHHhCCCHHHHHHHHHhhhhh-hhc-----ccchHHHHHHHHhCCHHHHhhCchHHHHHHHHHHHccChHHHHHHHHH
Confidence 34455689999999998886110 000 000111111122223 3455555566677788999999999998
Q ss_pred HHhCCCccCHH-------hHHHHHHHHHhCCCCHHHHHHHHHhchhc----CCCcCHHHHHHHHHHHHhcCCHHHHHHHH
Q 004470 211 LLNYGLVISVD-------SCNLFLSRLSNTCDGLRMVVKSFTEFPEL----GICWNTASYNIMIHCLCRFGKIKEAHLLL 279 (751)
Q Consensus 211 ~~~~g~~p~~~-------~~~~ll~~l~~~~~~~~~a~~~~~~~~~~----~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 279 (751)
+...=..|+.. .++.+-+.+....|+++.|.++-+...+. -+.+....+..+..+..-.|++++|..+.
T Consensus 441 l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~a~~~~G~~~~Al~~~ 520 (894)
T COG2909 441 LEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGEAAHIRGELTQALALM 520 (894)
T ss_pred HHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhHHHHHhchHHHHHHHH
Confidence 86542233322 33444444444567888777776665443 33345667777777888888888888777
Q ss_pred HHHHh
Q 004470 280 LQMEL 284 (751)
Q Consensus 280 ~~m~~ 284 (751)
.+..+
T Consensus 521 ~~a~~ 525 (894)
T COG2909 521 QQAEQ 525 (894)
T ss_pred HHHHH
Confidence 66544
No 270
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.20 E-value=5.2 Score=37.91 Aligned_cols=205 Identities=13% Similarity=0.073 Sum_probs=90.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 004470 468 TYTALADGLCKSGELETANELLHEMCRKGLQLNIYTYNSIVNGLCKAGNILQAVKLMEDMEVAGFHPDTFTYTTIMDAYC 547 (751)
Q Consensus 468 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~ 547 (751)
.|..-..+|-..+++++|...+.+..+- ...|...|. ....++.|.-+.+++.+. +.-+..|......|.
T Consensus 33 ~yekAAvafRnAk~feKakdcLlkA~~~-yEnnrslfh-------AAKayEqaamLake~~kl--sEvvdl~eKAs~lY~ 102 (308)
T KOG1585|consen 33 LYEKAAVAFRNAKKFEKAKDCLLKASKG-YENNRSLFH-------AAKAYEQAAMLAKELSKL--SEVVDLYEKASELYV 102 (308)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHHH-HHhcccHHH-------HHHHHHHHHHHHHHHHHh--HHHHHHHHHHHHHHH
Confidence 4555556666666777776666655432 121222221 123345555555555542 222344555555666
Q ss_pred HcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCC-----CCHhhHHHHHHHHHHcCCH
Q 004470 548 KSGEMVKAHELLRDMLDKGLQPSVVTFNVLMNGFCMSGMIEDGEKLLKWMLEKGLK-----PNAATYNPLIKQHCLRNDM 622 (751)
Q Consensus 548 ~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~g~~-----p~~~~~~~l~~~~~~~g~~ 622 (751)
..|.++.|-..+++.-+. ...-++++|++++++....-.. .-...+......+.+..++
T Consensus 103 E~GspdtAAmaleKAak~----------------lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf 166 (308)
T KOG1585|consen 103 ECGSPDTAAMALEKAAKA----------------LENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKF 166 (308)
T ss_pred HhCCcchHHHHHHHHHHH----------------hhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHh
Confidence 666666665555544321 1223444555555444321000 0011223333445555555
Q ss_pred HHHHHHHHHHHH----CCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHCC---CCCCHHHHHHHHHHHHhcCCHHH
Q 004470 623 RTTAKIYKGMCA----QGITPDG-NTYNILLQGHCKARNMKEAWFLHKEMVQKG---FNLTTSSYNALIKGFLKRKKYLE 694 (751)
Q Consensus 623 ~~A~~~~~~m~~----~g~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~~~~~~---~~p~~~~~~~l~~~~~~~g~~~~ 694 (751)
++|...+.+-.. ..--++. ..|-..|-.|....++..|.+.++.--+.+ -+-+..+...|+.+| ..|+.++
T Consensus 167 ~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ay-d~gD~E~ 245 (308)
T KOG1585|consen 167 TEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAY-DEGDIEE 245 (308)
T ss_pred hHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHh-ccCCHHH
Confidence 555544433221 0001111 123333444444556666666665533321 111334555555554 3455555
Q ss_pred HHHHH
Q 004470 695 ARELF 699 (751)
Q Consensus 695 A~~~~ 699 (751)
+.+++
T Consensus 246 ~~kvl 250 (308)
T KOG1585|consen 246 IKKVL 250 (308)
T ss_pred HHHHH
Confidence 44433
No 271
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=94.08 E-value=2 Score=45.90 Aligned_cols=130 Identities=16% Similarity=0.118 Sum_probs=90.2
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhCCCccCHHhHHHHHHHHHhCCCCHHHHHHHHHhchhcCCCcCHHHHHHHHHHHH
Q 004470 188 FDIFFQVLVEARKLNEARKLFEKLLNYGLVISVDSCNLFLSRLSNTCDGLRMVVKSFTEFPELGICWNTASYNIMIHCLC 267 (751)
Q Consensus 188 ~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 267 (751)
...++.-+.+.|.++.|+++-.. |+.. +. +..++|+++.|.+.-.+.. +...|..|.....
T Consensus 298 ~~~i~~fL~~~G~~e~AL~~~~D-------~~~r-Fe-----LAl~lg~L~~A~~~a~~~~------~~~~W~~Lg~~AL 358 (443)
T PF04053_consen 298 GQSIARFLEKKGYPELALQFVTD-------PDHR-FE-----LALQLGNLDIALEIAKELD------DPEKWKQLGDEAL 358 (443)
T ss_dssp HHHHHHHHHHTT-HHHHHHHSS--------HHHH-HH-----HHHHCT-HHHHHHHCCCCS------THHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHhhcCC-------hHHH-hH-----HHHhcCCHHHHHHHHHhcC------cHHHHHHHHHHHH
Confidence 46677778899999999987553 2211 11 1126799998887754443 6678999999999
Q ss_pred hcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCHHHHHH
Q 004470 268 RFGKIKEAHLLLLQMELRGCSPDVVSFSTIINGYCYLGELQRVLKLIEEMQIKGLKPNPYTYNSVVRLLCKTSKVVEAET 347 (751)
Q Consensus 268 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~ 347 (751)
++|+++-|.+.|.+..+ |..|+-.|.-.|+.+.-.++.+.....|- ++....++...|+.++..+
T Consensus 359 ~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~~~~~------~n~af~~~~~lgd~~~cv~ 423 (443)
T PF04053_consen 359 RQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAEERGD------INIAFQAALLLGDVEECVD 423 (443)
T ss_dssp HTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHHTT-------HHHHHHHHHHHT-HHHHHH
T ss_pred HcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHHHccC------HHHHHHHHHHcCCHHHHHH
Confidence 99999999999977654 56777778888998888888877776652 5666666667788877776
Q ss_pred HHHH
Q 004470 348 ILRE 351 (751)
Q Consensus 348 ~~~~ 351 (751)
++.+
T Consensus 424 lL~~ 427 (443)
T PF04053_consen 424 LLIE 427 (443)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6654
No 272
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=93.77 E-value=8.1 Score=38.66 Aligned_cols=165 Identities=16% Similarity=0.127 Sum_probs=75.4
Q ss_pred HHHHHHHHHHHcCCH---HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhhHHHHHH
Q 004470 538 TYTTIMDAYCKSGEM---VKAHELLRDMLDKGLQPSVVTFNVLMNGFCMSGMIEDGEKLLKWMLEKGLKPNAATYNPLIK 614 (751)
Q Consensus 538 ~~~~li~~~~~~g~~---~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~g~~p~~~~~~~l~~ 614 (751)
++..++.+|...+.. ++|.++++.+... .+..+..+-.-+..+.+.++.+++.+.+.+|+..- .-....+...+.
T Consensus 86 iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e-~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~-~~~e~~~~~~l~ 163 (278)
T PF08631_consen 86 ILRLLANAYLEWDTYESVEKALNALRLLESE-YGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSV-DHSESNFDSILH 163 (278)
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHHh-CCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhc-ccccchHHHHHH
Confidence 445555666555543 3444555555433 22234444444555555667777777777776642 112223333333
Q ss_pred HH--HHcCCHHHHHHHHHHHHHCCCCCCHH-HH-HHHHH---HHHhcCC------HHHHHHHHHHHHH-CCCCCCHHHHH
Q 004470 615 QH--CLRNDMRTTAKIYKGMCAQGITPDGN-TY-NILLQ---GHCKARN------MKEAWFLHKEMVQ-KGFNLTTSSYN 680 (751)
Q Consensus 615 ~~--~~~g~~~~A~~~~~~m~~~g~~p~~~-~~-~~li~---~~~~~g~------~~~A~~~~~~~~~-~~~~p~~~~~~ 680 (751)
.+ ........|...+..++..-+.|... .. ..++. .....++ .+....+++...+ .+.+.+..+-.
T Consensus 164 ~i~~l~~~~~~~a~~~ld~~l~~r~~~~~~~~~e~~vl~~~~~~~~~~~~~~~~~i~~l~~~~~~v~~~~~~~ls~~~~~ 243 (278)
T PF08631_consen 164 HIKQLAEKSPELAAFCLDYLLLNRFKSSEDQWLEKLVLTRVLLTTQSKDLSSSEKIESLEELLSIVEHSLGKQLSAEAAS 243 (278)
T ss_pred HHHHHHhhCcHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHcCCccccchhHHHHHHHHHHHHHHHhcCCCCHHHHH
Confidence 32 12223345555555555433344332 11 11111 1111111 3344444443322 12223333322
Q ss_pred ---HH----HHHHHhcCCHHHHHHHHHHHHH
Q 004470 681 ---AL----IKGFLKRKKYLEARELFEEMRR 704 (751)
Q Consensus 681 ---~l----~~~~~~~g~~~~A~~~~~~~~~ 704 (751)
++ +..+.+.++|++|.++|+-.+.
T Consensus 244 a~~~LLW~~~~~~~~~k~y~~A~~w~~~al~ 274 (278)
T PF08631_consen 244 AIHTLLWNKGKKHYKAKNYDEAIEWYELALH 274 (278)
T ss_pred HHHHHHHHHHHHHHhhcCHHHHHHHHHHHHH
Confidence 22 3445678999999999986653
No 273
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.66 E-value=1.5 Score=43.26 Aligned_cols=117 Identities=14% Similarity=0.009 Sum_probs=58.2
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccH----HHHHHHHHhcCCH
Q 004470 267 CRFGKIKEAHLLLLQMELRGCSPDVVSFSTIINGYCYLGELQRVLKLIEEMQIKGLKPNPYTY----NSVVRLLCKTSKV 342 (751)
Q Consensus 267 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~----~~li~~~~~~g~~ 342 (751)
.-+|+..+|-..++++.+. .+.|..+++-.=.+|...|+.+.-...++++... -.+|...| ..+.-++...|-+
T Consensus 114 ~~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~g~y 191 (491)
T KOG2610|consen 114 WGRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEECGIY 191 (491)
T ss_pred hccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHhccc
Confidence 3456666666666665543 3345555555555566666666555555555433 11222211 2222333345555
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 004470 343 VEAETILREMMNQGIVPDNVIYTTLIDGFCKMGNVAAAYRLFDE 386 (751)
Q Consensus 343 ~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 386 (751)
++|++.-++..+.+ +.|..+-.++.+.+--.|++.++.+...+
T Consensus 192 ~dAEk~A~ralqiN-~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ 234 (491)
T KOG2610|consen 192 DDAEKQADRALQIN-RFDCWASHAKAHVLEMNGRHKEGKEFMYK 234 (491)
T ss_pred hhHHHHHHhhccCC-CcchHHHHHHHHHHHhcchhhhHHHHHHh
Confidence 55555555555443 33445555555555555555555554443
No 274
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=93.56 E-value=13 Score=40.24 Aligned_cols=378 Identities=12% Similarity=0.069 Sum_probs=213.9
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHhCCCccCHHhHHHHHHHHHhCCCCHHHHHHHHHhchhc-CCC-cCHHHHHHHH
Q 004470 186 HVFDIFFQVLVEARKLNEARKLFEKLLNYGLVISVDSCNLFLSRLSNTCDGLRMVVKSFTEFPEL-GIC-WNTASYNIMI 263 (751)
Q Consensus 186 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~l~~~~~~~~~a~~~~~~~~~~-~~~-~~~~~~~~li 263 (751)
.-|--.+.-=.+.|..+.+.++|++.+.. +.-+...+...+..+....|+.+..+..|+.+... |.. -+...|...|
T Consensus 80 gyW~kfA~~E~klg~~~~s~~Vfergv~a-ip~SvdlW~~Y~~f~~n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyi 158 (577)
T KOG1258|consen 80 GYWKKFADYEYKLGNAENSVKVFERGVQA-IPLSVDLWLSYLAFLKNNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYI 158 (577)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHh-hhhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhcccchhccHHHHHHH
Confidence 34455566667889999999999999864 44555666666766666678888999999988654 211 2455788888
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh---c------CCHHHHHHHHHHHHHC---C-CCCCcccHH
Q 004470 264 HCLCRFGKIKEAHLLLLQMELRGCSPDVVSFSTIINGYCY---L------GELQRVLKLIEEMQIK---G-LKPNPYTYN 330 (751)
Q Consensus 264 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~---~------g~~~~A~~~~~~m~~~---g-~~p~~~~~~ 330 (751)
..--.++++.....+|++.++. | ...|+....-|.+ . -..+++.++-...... + ..+......
T Consensus 159 e~en~qks~k~v~~iyeRilei---P-~~~~~~~f~~f~~~l~~~~~~~l~~~d~~~~l~~~~~~~~~~~~~~~~~e~~~ 234 (577)
T KOG1258|consen 159 EFENGQKSWKRVANIYERILEI---P-LHQLNRHFDRFKQLLNQNEEKILLSIDELIQLRSDVAERSKITHSQEPLEELE 234 (577)
T ss_pred HHHhccccHHHHHHHHHHHHhh---h-hhHhHHHHHHHHHHHhcCChhhhcCHHHHHHHhhhHHhhhhcccccChhHHHH
Confidence 8888899999999999999874 2 3445544444332 1 2233333333322211 0 000011111
Q ss_pred HHHHHHHh-cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC---CC----CCHHHHHHH
Q 004470 331 SVVRLLCK-TSKVVEAETILREMMNQGIVPDNVIYTTLIDGFCKMGNVAAAYRLFDEMRGLN---II----PDLLTYTAI 402 (751)
Q Consensus 331 ~li~~~~~-~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~---~~----p~~~~~~~l 402 (751)
.-+..-.. .+..+++...+.+.... --..+-..-...+..-.|++-..+- +. ++..+|...
T Consensus 235 ~~v~~~~~~s~~l~~~~~~l~~~~~~-----------~~~~~~~s~~~~~kr~~fE~~IkrpYfhvkpl~~aql~nw~~y 303 (577)
T KOG1258|consen 235 IGVKDSTDPSKSLTEEKTILKRIVSI-----------HEKVYQKSEEEEEKRWGFEEGIKRPYFHVKPLDQAQLKNWRYY 303 (577)
T ss_pred HHHhhccCccchhhHHHHHHHHHHHH-----------HHHHHHhhHhHHHHHHhhhhhccccccccCcccHHHHHHHHHH
Confidence 11110000 11112222211111110 0111112222333333444433321 12 346678888
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH
Q 004470 403 ICGFCLTGKMVEAEKLFHEMLGRGLEPDEIVYTALIDGYCKAGGMKKAFSLHNNMVHMRLTPNVVTYTALADGLCKSGEL 482 (751)
Q Consensus 403 i~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 482 (751)
+.--...|+.+.+.-+|+...-- +..=...|-..+.-....|+.+-|..++....+...+-.+.+.-.-....-..|++
T Consensus 304 Ldf~i~~g~~~~~~~l~ercli~-cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f~e~~~n~ 382 (577)
T KOG1258|consen 304 LDFEITLGDFSRVFILFERCLIP-CALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEARFEESNGNF 382 (577)
T ss_pred hhhhhhcccHHHHHHHHHHHHhH-HhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHHHHhhccH
Confidence 88888899999999999887642 22223344455555556689888888887776654432322222222223346799
Q ss_pred HHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHHcCCHHHHH---HHHHHHHHCCCCCCHHHHHHHHHH-----HHHcCCHH
Q 004470 483 ETANELLHEMCRKGLQLNIY-TYNSIVNGLCKAGNILQAV---KLMEDMEVAGFHPDTFTYTTIMDA-----YCKSGEMV 553 (751)
Q Consensus 483 ~~A~~l~~~m~~~g~~~~~~-~~~~li~~~~~~g~~~~A~---~~~~~~~~~~~~~~~~~~~~li~~-----~~~~g~~~ 553 (751)
+.|..+++.+.+.- |+.. .-..-+....+.|+.+.+. +++...... ..+......+.-- +.-.++.+
T Consensus 383 ~~A~~~lq~i~~e~--pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~--~~~~~i~~~l~~~~~r~~~~i~~d~~ 458 (577)
T KOG1258|consen 383 DDAKVILQRIESEY--PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEG--KENNGILEKLYVKFARLRYKIREDAD 458 (577)
T ss_pred HHHHHHHHHHHhhC--CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhccc--ccCcchhHHHHHHHHHHHHHHhcCHH
Confidence 99999999998873 4432 2223344556778888877 333333322 2222222222221 23357889
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 004470 554 KAHELLRDMLDKGLQPSVVTFNVLMNGFCMSG 585 (751)
Q Consensus 554 ~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g 585 (751)
.|..++.++.+. .+++...|..+++.....+
T Consensus 459 ~a~~~l~~~~~~-~~~~k~~~~~~~~~~~~~~ 489 (577)
T KOG1258|consen 459 LARIILLEANDI-LPDCKVLYLELIRFELIQP 489 (577)
T ss_pred HHHHHHHHhhhc-CCccHHHHHHHHHHHHhCC
Confidence 999999999886 5778888888887766554
No 275
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=93.54 E-value=2.9 Score=44.73 Aligned_cols=24 Identities=21% Similarity=0.155 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHH
Q 004470 572 VTFNVLMNGFCMSGMIEDGEKLLK 595 (751)
Q Consensus 572 ~~~~~li~~~~~~g~~~~A~~l~~ 595 (751)
..|..|.+...+.|+++-|++.+.
T Consensus 348 ~~W~~Lg~~AL~~g~~~lAe~c~~ 371 (443)
T PF04053_consen 348 EKWKQLGDEALRQGNIELAEECYQ 371 (443)
T ss_dssp HHHHHHHHHHHHTTBHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHH
Confidence 344444444444444444444443
No 276
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=93.20 E-value=5.5 Score=34.95 Aligned_cols=41 Identities=10% Similarity=0.125 Sum_probs=19.1
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 004470 542 IMDAYCKSGEMVKAHELLRDMLDKGLQPSVVTFNVLMNGFCM 583 (751)
Q Consensus 542 li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~ 583 (751)
++..+...+.......+++.+...+ ..+....+.++..|++
T Consensus 13 vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~ 53 (140)
T smart00299 13 VVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAK 53 (140)
T ss_pred HHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHH
Confidence 3344444444555555555554443 2344445555555544
No 277
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.08 E-value=3.6 Score=37.64 Aligned_cols=92 Identities=15% Similarity=0.112 Sum_probs=54.5
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 004470 648 LQGHCKARNMKEAWFLHKEMVQKGFNL--TTSSYNALIKGFLKRKKYLEARELFEEMRRGGLVADREIYYFFVDINFEEG 725 (751)
Q Consensus 648 i~~~~~~g~~~~A~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 725 (751)
...+...|++++|...++..+.....- ...+-..|.......|.+++|++.++...+.++ .+.....-++.+...|
T Consensus 96 Ak~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w--~~~~~elrGDill~kg 173 (207)
T COG2976 96 AKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESW--AAIVAELRGDILLAKG 173 (207)
T ss_pred HHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccH--HHHHHHHhhhHHHHcC
Confidence 344566777777777777665431110 112333456666677777777777776555432 2222334556777777
Q ss_pred ChhHHHHHHHHHHHcC
Q 004470 726 NTEITLELCDAAIECY 741 (751)
Q Consensus 726 ~~~~A~~~~~~~~~~~ 741 (751)
+.++|+.-|+++++..
T Consensus 174 ~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 174 DKQEARAAYEKALESD 189 (207)
T ss_pred chHHHHHHHHHHHHcc
Confidence 7777777777777765
No 278
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=93.05 E-value=0.12 Score=32.44 Aligned_cols=32 Identities=13% Similarity=0.292 Sum_probs=17.6
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHH
Q 004470 699 FEEMRRGGLVADREIYYFFVDINFEEGNTEITL 731 (751)
Q Consensus 699 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 731 (751)
|+++++.. |.+...|+.++..|...|++++|+
T Consensus 2 y~kAie~~-P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELN-PNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHHC-CCCHHHHHHHHHHHHHCcCHHhhc
Confidence 34444433 445566666666666666666654
No 279
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=92.99 E-value=0.6 Score=45.79 Aligned_cols=92 Identities=11% Similarity=0.160 Sum_probs=67.5
Q ss_pred HHHHhhhhCCC----CChhHHHHHHHHHHhcCChHHHHHHHHHHHcCCCCCchhhhHHHHHHHHHhhhcCCCChhhHHHH
Q 004470 116 DFFDWACLRRE----PILEARCIVVQISVAAKDLKTAHGLIHDFWAKPNLDASIAFTHFVERLIYTYKDWGSDPHVFDIF 191 (751)
Q Consensus 116 ~~f~~~~~~~~----~~~~~~~~~~~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l 191 (751)
.|+.|+..+.. ....++..++..+...++++.+...+++++..+ |-+-..|..|
T Consensus 136 ~f~~WV~~~R~~l~e~~~~~l~~lae~~~~~~~~~~~~~~l~~Li~~d----------------------p~~E~~~~~l 193 (280)
T COG3629 136 RFDEWVLEQRRALEELFIKALTKLAEALIACGRADAVIEHLERLIELD----------------------PYDEPAYLRL 193 (280)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcC----------------------ccchHHHHHH
Confidence 47888866532 234566667777788888888888888887765 5666788899
Q ss_pred HHHHHhcCChhHHHHHHHHHHh-----CCCccCHHhHHHHHHH
Q 004470 192 FQVLVEARKLNEARKLFEKLLN-----YGLVISVDSCNLFLSR 229 (751)
Q Consensus 192 ~~~~~~~g~~~~A~~~~~~~~~-----~g~~p~~~~~~~ll~~ 229 (751)
+.+|.+.|+...|+..|+++.+ .|+.|...........
T Consensus 194 m~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~y~~~ 236 (280)
T COG3629 194 MEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRALYEEI 236 (280)
T ss_pred HHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHHHHHH
Confidence 9999999999999999998865 4666766554444433
No 280
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=92.98 E-value=0.66 Score=44.51 Aligned_cols=88 Identities=18% Similarity=0.205 Sum_probs=52.3
Q ss_pred cCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhc-CCHHHHHH
Q 004470 269 FGKIKEAHLLLLQMELRGCSPDVVSFSTIINGYCYLGELQRVLKLIEEMQIKGLKPNPYTYNSVVRLLCKT-SKVVEAET 347 (751)
Q Consensus 269 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~-g~~~~A~~ 347 (751)
.+.++=....+..|.+.|+..|..+|+.|++.+-+-.- .|. |.+-..+..- .+-+-++.
T Consensus 85 R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkf----------------iP~----nvfQ~~F~HYP~QQ~C~I~ 144 (406)
T KOG3941|consen 85 RTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKF----------------IPQ----NVFQKVFLHYPQQQNCAIK 144 (406)
T ss_pred cchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCccccc----------------ccH----HHHHHHHhhCchhhhHHHH
Confidence 35555566667788888888888888888877643211 111 1111111111 12234667
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHHcCC
Q 004470 348 ILREMMNQGIVPDNVIYTTLIDGFCKMGN 376 (751)
Q Consensus 348 ~~~~m~~~g~~p~~~~~~~li~~~~~~g~ 376 (751)
++++|...|+.||..+-..|++++.+.|-
T Consensus 145 vLeqME~hGVmPdkE~e~~lvn~FGr~~~ 173 (406)
T KOG3941|consen 145 VLEQMEWHGVMPDKEIEDILVNAFGRWNF 173 (406)
T ss_pred HHHHHHHcCCCCchHHHHHHHHHhccccc
Confidence 77777777777777777777777766654
No 281
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=92.90 E-value=0.69 Score=42.06 Aligned_cols=92 Identities=13% Similarity=0.079 Sum_probs=68.7
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHCCCCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 004470 613 IKQHCLRNDMRTTAKIYKGMCAQGITPD-----GNTYNILLQGHCKARNMKEAWFLHKEMVQKGFNLTTSSYNALIKGFL 687 (751)
Q Consensus 613 ~~~~~~~g~~~~A~~~~~~m~~~g~~p~-----~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~ 687 (751)
..-+.+.|++++|..-|.++++.- ++. ...|..-..++.+.+.++.|++-..++++.++. .......-+.+|.
T Consensus 102 GN~~F~ngdyeeA~skY~~Ale~c-p~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pt-y~kAl~RRAeaye 179 (271)
T KOG4234|consen 102 GNELFKNGDYEEANSKYQEALESC-PSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPT-YEKALERRAEAYE 179 (271)
T ss_pred HHHhhhcccHHHHHHHHHHHHHhC-ccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCch-hHHHHHHHHHHHH
Confidence 445678899999999999888752 222 344556667778888999999988888887655 3344445567888
Q ss_pred hcCCHHHHHHHHHHHHHCC
Q 004470 688 KRKKYLEARELFEEMRRGG 706 (751)
Q Consensus 688 ~~g~~~~A~~~~~~~~~~~ 706 (751)
+..++++|++-|.++++..
T Consensus 180 k~ek~eealeDyKki~E~d 198 (271)
T KOG4234|consen 180 KMEKYEEALEDYKKILESD 198 (271)
T ss_pred hhhhHHHHHHHHHHHHHhC
Confidence 8889999999999988853
No 282
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=92.67 E-value=14 Score=38.35 Aligned_cols=65 Identities=9% Similarity=-0.003 Sum_probs=44.7
Q ss_pred CHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004470 605 NAATYNPLIKQHCLRNDMRTTAKIYKGMCAQGITP---DGNTYNILLQGHCKARNMKEAWFLHKEMVQ 669 (751)
Q Consensus 605 ~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p---~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 669 (751)
...++..+...+.+.|.++.|...+..+...+... .+...-.-+..+...|+.++|+..+++.++
T Consensus 145 ~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 145 LAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 44567777777888888888888888877643111 233333446667778888888888887776
No 283
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=92.65 E-value=0.15 Score=32.04 Aligned_cols=32 Identities=28% Similarity=0.390 Sum_probs=20.9
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 004470 664 HKEMVQKGFNLTTSSYNALIKGFLKRKKYLEAR 696 (751)
Q Consensus 664 ~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~ 696 (751)
|+++++..+. ++..|..++..|...|++++|+
T Consensus 2 y~kAie~~P~-n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELNPN-NAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHHCCC-CHHHHHHHHHHHHHCcCHHhhc
Confidence 4455555544 6667777777777777777764
No 284
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=92.54 E-value=27 Score=41.13 Aligned_cols=104 Identities=13% Similarity=0.057 Sum_probs=53.0
Q ss_pred HHHHhcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH--HHHHHHHHHHhcCC
Q 004470 579 NGFCMSGMIEDGEKLLKWMLEKGLKPNAATYNPLIKQHCLRNDMRTTAKIYKGMCAQGITPDGN--TYNILLQGHCKARN 656 (751)
Q Consensus 579 ~~~~~~g~~~~A~~l~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~--~~~~li~~~~~~g~ 656 (751)
+.+...+.+++|.-.|+..=+ ..-.+.+|...|++.+|..+..++.. .-|.. +-..|+.-+...++
T Consensus 947 ~hL~~~~~~~~Aal~Ye~~Gk---------lekAl~a~~~~~dWr~~l~~a~ql~~---~~de~~~~a~~L~s~L~e~~k 1014 (1265)
T KOG1920|consen 947 DHLREELMSDEAALMYERCGK---------LEKALKAYKECGDWREALSLAAQLSE---GKDELVILAEELVSRLVEQRK 1014 (1265)
T ss_pred HHHHHhccccHHHHHHHHhcc---------HHHHHHHHHHhccHHHHHHHHHhhcC---CHHHHHHHHHHHHHHHHHccc
Confidence 333445555655555543321 12334455566666666666655532 11211 12455556666667
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 004470 657 MKEAWFLHKEMVQKGFNLTTSSYNALIKGFLKRKKYLEARELFEEM 702 (751)
Q Consensus 657 ~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 702 (751)
.-+|-++..+..+. | ...+..|++...|++|+.+....
T Consensus 1015 h~eAa~il~e~~sd---~-----~~av~ll~ka~~~~eAlrva~~~ 1052 (1265)
T KOG1920|consen 1015 HYEAAKILLEYLSD---P-----EEAVALLCKAKEWEEALRVASKA 1052 (1265)
T ss_pred chhHHHHHHHHhcC---H-----HHHHHHHhhHhHHHHHHHHHHhc
Confidence 66766666665432 1 12334556666677776665543
No 285
>PRK11619 lytic murein transglycosylase; Provisional
Probab=92.48 E-value=23 Score=40.18 Aligned_cols=95 Identities=8% Similarity=0.029 Sum_probs=52.4
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----CCCCCCHHHHHHHHHHHH
Q 004470 473 ADGLCKSGELETANELLHEMCRKGLQLNIYTYNSIVNGLCKAGNILQAVKLMEDMEV-----AGFHPDTFTYTTIMDAYC 547 (751)
Q Consensus 473 i~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~~~~~li~~~~ 547 (751)
+..+...|....|...+..+... .+......+.....+.|..+.++........ ..+ | ..|...+..+.
T Consensus 414 a~~L~~~g~~~~a~~ew~~~~~~---~~~~~~~~la~~A~~~g~~~~ai~~~~~~~~~~~~~~rf-p--~~~~~~~~~~a 487 (644)
T PRK11619 414 VRELMYWNMDNTARSEWANLVAS---RSKTEQAQLARYAFNQQWWDLSVQATIAGKLWDHLEERF-P--LAWNDEFRRYT 487 (644)
T ss_pred HHHHHHCCCHHHHHHHHHHHHhc---CCHHHHHHHHHHHHHCCCHHHHHHHHhhchhHHHHHHhC-C--cchHHHHHHHH
Confidence 34455667777777777766654 2344445555555566766666655543221 111 2 13566666666
Q ss_pred HcCCHHHHHHHHHHHHhCCCCCCHHH
Q 004470 548 KSGEMVKAHELLRDMLDKGLQPSVVT 573 (751)
Q Consensus 548 ~~g~~~~A~~~~~~~~~~~~~p~~~~ 573 (751)
+...++.++-.--...++++.|+..+
T Consensus 488 ~~~~v~~~lv~ai~rqES~f~p~a~S 513 (644)
T PRK11619 488 SGKGIPQSYAMAIARQESAWNPKARS 513 (644)
T ss_pred HHcCCCHHHHHHHHHHhcCCCCCCcc
Confidence 66666665543333346667776554
No 286
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=92.38 E-value=0.29 Score=31.13 Aligned_cols=26 Identities=19% Similarity=0.249 Sum_probs=19.5
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHH
Q 004470 714 YYFFVDINFEEGNTEITLELCDAAIE 739 (751)
Q Consensus 714 ~~~l~~~~~~~g~~~~A~~~~~~~~~ 739 (751)
|..++..|.+.|++++|++++++++.
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~aL~ 27 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQALA 27 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 56777888888888888888888654
No 287
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=92.27 E-value=0.3 Score=48.02 Aligned_cols=89 Identities=10% Similarity=-0.040 Sum_probs=49.9
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 004470 613 IKQHCLRNDMRTTAKIYKGMCAQGITP-DGNTYNILLQGHCKARNMKEAWFLHKEMVQKGFNLTTSSYNALIKGFLKRKK 691 (751)
Q Consensus 613 ~~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 691 (751)
..-|.++|.+++|++.|...+.. .| |++++..-..+|.+..++..|..-...++..+-. -...|..-+.+-...|+
T Consensus 104 GN~yFKQgKy~EAIDCYs~~ia~--~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~-Y~KAYSRR~~AR~~Lg~ 180 (536)
T KOG4648|consen 104 GNTYFKQGKYEEAIDCYSTAIAV--YPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKL-YVKAYSRRMQARESLGN 180 (536)
T ss_pred hhhhhhccchhHHHHHhhhhhcc--CCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHH-HHHHHHHHHHHHHHHhh
Confidence 44466777777777777766653 34 6666666677777777777666655555543211 11223333333333455
Q ss_pred HHHHHHHHHHHHH
Q 004470 692 YLEARELFEEMRR 704 (751)
Q Consensus 692 ~~~A~~~~~~~~~ 704 (751)
..+|.+-++..++
T Consensus 181 ~~EAKkD~E~vL~ 193 (536)
T KOG4648|consen 181 NMEAKKDCETVLA 193 (536)
T ss_pred HHHHHHhHHHHHh
Confidence 5555555555555
No 288
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=92.24 E-value=1.1 Score=42.99 Aligned_cols=31 Identities=23% Similarity=0.389 Sum_probs=19.0
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC
Q 004470 415 AEKLFHEMLGRGLEPDEIVYTALIDGYCKAG 445 (751)
Q Consensus 415 A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g 445 (751)
+++++++|...|+.||..+-..|++++.+.+
T Consensus 142 ~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~ 172 (406)
T KOG3941|consen 142 AIKVLEQMEWHGVMPDKEIEDILVNAFGRWN 172 (406)
T ss_pred HHHHHHHHHHcCCCCchHHHHHHHHHhcccc
Confidence 4556666666666666666666666665544
No 289
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=92.01 E-value=15 Score=37.02 Aligned_cols=130 Identities=12% Similarity=0.166 Sum_probs=61.5
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHh--c----CChhHHHHHHHHHHHcCC---CCCHhhHHHHHHHHHHcCC----
Q 004470 555 AHELLRDMLDKGLQPSVVTFNVLMNGFCM--S----GMIEDGEKLLKWMLEKGL---KPNAATYNPLIKQHCLRND---- 621 (751)
Q Consensus 555 A~~~~~~~~~~~~~p~~~~~~~li~~~~~--~----g~~~~A~~l~~~~~~~g~---~p~~~~~~~l~~~~~~~g~---- 621 (751)
...+++.|.+.|+.-+..+|-+....... . .....|..+++.|.+... .++...+..++.. ..++
T Consensus 81 ~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~e~l 158 (297)
T PF13170_consen 81 VLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDVEEL 158 (297)
T ss_pred HHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccHHHH
Confidence 34455555555555554443332221111 1 123445666666665421 2233444444333 2222
Q ss_pred HHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHhcCC--HHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 004470 622 MRTTAKIYKGMCAQGITPDG--NTYNILLQGHCKARN--MKEAWFLHKEMVQKGFNLTTSSYNALIKGF 686 (751)
Q Consensus 622 ~~~A~~~~~~m~~~g~~p~~--~~~~~li~~~~~~g~--~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~ 686 (751)
.+.+..+|+.+.+.|+..+. .....++........ ...+.++++.+.+.|+++....|..++-..
T Consensus 159 ~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~lGlLa 227 (297)
T PF13170_consen 159 AERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTLGLLA 227 (297)
T ss_pred HHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHHHHHH
Confidence 24455666666666655432 222222222211111 346677777777777777777666554433
No 290
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=91.99 E-value=7.6 Score=35.00 Aligned_cols=32 Identities=13% Similarity=0.285 Sum_probs=15.8
Q ss_pred HHHHHHHCCCCCCcccHHHHHHHHHhcCCHHH
Q 004470 313 LIEEMQIKGLKPNPYTYNSVVRLLCKTSKVVE 344 (751)
Q Consensus 313 ~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~ 344 (751)
.+..+.+.|++|+...|..+++.+.+.|++..
T Consensus 16 YirSl~~~~i~~~~~L~~lli~lLi~~~~~~~ 47 (167)
T PF07035_consen 16 YIRSLNQHNIPVQHELYELLIDLLIRNGQFSQ 47 (167)
T ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHH
Confidence 33344444555555555555555555555443
No 291
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=91.96 E-value=4.1 Score=36.15 Aligned_cols=59 Identities=15% Similarity=0.148 Sum_probs=40.2
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCCCccCHHhHHHHHHHHHhCCCCHHHHHHHHHhchhcC
Q 004470 191 FFQVLVEARKLNEARKLFEKLLNYGLVISVDSCNLFLSRLSNTCDGLRMVVKSFTEFPELG 251 (751)
Q Consensus 191 l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~l~~~~~~~~~a~~~~~~~~~~~ 251 (751)
++.+=.+.+..+++..++.-+.-. .|.....-.+-+.+.-..|++++|+.+|+++.+.+
T Consensus 16 ~~~~al~~~~~~D~e~lL~ALrvL--RP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~ 74 (160)
T PF09613_consen 16 VLSVALRLGDPDDAEALLDALRVL--RPEFPELDLFDGWLHIVRGDWDDALRLLRELEERA 74 (160)
T ss_pred HHHHHHccCChHHHHHHHHHHHHh--CCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccC
Confidence 344445667888888888877765 66666666666666556677777777777766654
No 292
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=91.80 E-value=0.37 Score=30.04 Aligned_cols=32 Identities=9% Similarity=0.125 Sum_probs=26.8
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHhCCCccC
Q 004470 186 HVFDIFFQVLVEARKLNEARKLFEKLLNYGLVIS 219 (751)
Q Consensus 186 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~ 219 (751)
.+|..++.+|...|++++|+..|+++++. .|+
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~ 33 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALEL--DPD 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHH--STT
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHH--CcC
Confidence 46788999999999999999999999886 454
No 293
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=91.49 E-value=29 Score=39.33 Aligned_cols=192 Identities=14% Similarity=0.046 Sum_probs=95.7
Q ss_pred HHcCCHHHHHHHHHHHHhCCC-CCC-----HHHHHHHHH--HHHhcCChhHHHHHHH--------HHHHcCCCCCHhhHH
Q 004470 547 CKSGEMVKAHELLRDMLDKGL-QPS-----VVTFNVLMN--GFCMSGMIEDGEKLLK--------WMLEKGLKPNAATYN 610 (751)
Q Consensus 547 ~~~g~~~~A~~~~~~~~~~~~-~p~-----~~~~~~li~--~~~~~g~~~~A~~l~~--------~~~~~g~~p~~~~~~ 610 (751)
+-.+++..|...++.+.+..- .|+ ...+..++. .+...|+.+.|...|. .....+...+..++.
T Consensus 372 ~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~~~~~~~~~~~~~~~~~~El~ila 451 (608)
T PF10345_consen 372 FIRGDWSKATQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQKPRFLLCEAANRKSKFRELYILA 451 (608)
T ss_pred HHCcCHHHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHhhhHHhhhhhhccCCcchHHHHHH
Confidence 456889899999988875311 111 222222222 3345799999999997 444444444444443
Q ss_pred HH--HHHHH--HcCCHHH--HHHHHHHHHHC-CCCCC--HHH-HHHHHHHHHhcC--CHHHHHHHHHHHHH-----CCC-
Q 004470 611 PL--IKQHC--LRNDMRT--TAKIYKGMCAQ-GITPD--GNT-YNILLQGHCKAR--NMKEAWFLHKEMVQ-----KGF- 672 (751)
Q Consensus 611 ~l--~~~~~--~~g~~~~--A~~~~~~m~~~-g~~p~--~~~-~~~li~~~~~~g--~~~~A~~~~~~~~~-----~~~- 672 (751)
.+ +..+. ...+.++ +.++++.+... .-.|+ ..+ +..++.++.... ...++...+.+..+ .+.
T Consensus 452 ~LNl~~I~~~~~~~~~~~~~~~~l~~~i~p~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ne~k~~l~~~L~~~~~~~~n~ 531 (608)
T PF10345_consen 452 ALNLAIILQYESSRDDSESELNELLEQIEPLCSNSPNSYNRTAYCLVLATYNTFEPFSSNEAKRHLQEALKMANNKLGNS 531 (608)
T ss_pred HHHHHHHhHhhcccchhhhHHHHHHHhcCccccCCccHHHHHHHHHHHHHHhhCCccccHHHHHHHHHHHHHHHHhhccc
Confidence 22 11122 2222223 66666655441 11222 222 333344433211 12244433333222 111
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CC--CHHHHH-----HHHHHHHhcCChhHHHHHHHHHHH
Q 004470 673 NLTTSSYNALIKGFLKRKKYLEARELFEEMRRGGL-VA--DREIYY-----FFVDINFEEGNTEITLELCDAAIE 739 (751)
Q Consensus 673 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~--~~~~~~-----~l~~~~~~~g~~~~A~~~~~~~~~ 739 (751)
.--..+++.+...+. .|+..|..+.......... .| ....|. .+.+.+...|+.++|.....+...
T Consensus 532 ~l~~~~L~lm~~~lf-~~~~~e~~~~s~~a~~~A~k~~d~~~~LW~~v~~~~l~~~~~~~G~~~ka~~~~~~~~~ 605 (608)
T PF10345_consen 532 QLLAILLNLMGHRLF-EGDVGEQAKKSARAFQLAKKSSDYSDQLWHLVASGMLADSYEVQGDRDKAEEARQQLDR 605 (608)
T ss_pred hHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHH
Confidence 111223444444455 7888887766666544211 22 334443 333457788999999988877643
No 294
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=91.39 E-value=0.6 Score=28.95 Aligned_cols=29 Identities=24% Similarity=0.461 Sum_probs=17.1
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHcC
Q 004470 713 IYYFFVDINFEEGNTEITLELCDAAIECY 741 (751)
Q Consensus 713 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 741 (751)
.+..++..+.+.|++++|++.++++++..
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~l~ 31 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALELD 31 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHC
Confidence 45556666666666666666666666543
No 295
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.27 E-value=29 Score=38.88 Aligned_cols=168 Identities=8% Similarity=0.093 Sum_probs=85.6
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCCCccC---HHhHHHHHHHHHhCCCCHHHHHHHHHhchhcCCCcCHHHHHHHHHHHHh
Q 004470 192 FQVLVEARKLNEARKLFEKLLNYGLVIS---VDSCNLFLSRLSNTCDGLRMVVKSFTEFPELGICWNTASYNIMIHCLCR 268 (751)
Q Consensus 192 ~~~~~~~g~~~~A~~~~~~~~~~g~~p~---~~~~~~ll~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 268 (751)
++-+.+.+++++|++.-+..... .|. .......+..+. ..|++++|-..--.|... +...|-.-+..+..
T Consensus 363 i~Wll~~k~yeeAl~~~k~~~~~--~~~~~i~kv~~~yI~HLl-~~~~y~~Aas~~p~m~gn----~~~eWe~~V~~f~e 435 (846)
T KOG2066|consen 363 IDWLLEKKKYEEALDAAKASIGN--EERFVIKKVGKTYIDHLL-FEGKYDEAASLCPKMLGN----NAAEWELWVFKFAE 435 (846)
T ss_pred HHHHHHhhHHHHHHHHHHhccCC--ccccchHHHHHHHHHHHH-hcchHHHHHhhhHHHhcc----hHHHHHHHHHHhcc
Confidence 56678889999998877655433 332 223344555554 457777777766666554 55556655555555
Q ss_pred cCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCHHHHHHH
Q 004470 269 FGKIKEAHLLLLQMELRGCSPDVVSFSTIINGYCYLGELQRVLKLIEEMQIKGLKPNPYTYNSVVRLLCKTSKVVEAETI 348 (751)
Q Consensus 269 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~ 348 (751)
.++......+ +.......+...|..++..+.. . ....+++...+. +++ .|..+.-.-.-
T Consensus 436 ~~~l~~Ia~~---lPt~~~rL~p~vYemvLve~L~-~---~~~~F~e~i~~W--p~~--Lys~l~iisa~---------- 494 (846)
T KOG2066|consen 436 LDQLTDIAPY---LPTGPPRLKPLVYEMVLVEFLA-S---DVKGFLELIKEW--PGH--LYSVLTIISAT---------- 494 (846)
T ss_pred ccccchhhcc---CCCCCcccCchHHHHHHHHHHH-H---HHHHHHHHHHhC--Chh--hhhhhHHHhhc----------
Confidence 5554333222 2222122345566666666655 2 222223322222 112 22222111100
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 004470 349 LREMMNQGIVPDNVIYTTLIDGFCKMGNVAAAYRLFDEMRG 389 (751)
Q Consensus 349 ~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 389 (751)
-.+..+. -. +...-..|+..|...++++.|+.++-...+
T Consensus 495 ~~q~~q~-Se-~~~L~e~La~LYl~d~~Y~~Al~~ylklk~ 533 (846)
T KOG2066|consen 495 EPQIKQN-SE-STALLEVLAHLYLYDNKYEKALPIYLKLQD 533 (846)
T ss_pred chHHHhh-cc-chhHHHHHHHHHHHccChHHHHHHHHhccC
Confidence 1111111 11 112233388888899999999888877654
No 296
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=91.27 E-value=2.5 Score=41.59 Aligned_cols=74 Identities=9% Similarity=0.159 Sum_probs=39.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----CCCCCCHHHHHHHH
Q 004470 644 YNILLQGHCKARNMKEAWFLHKEMVQKGFNLTTSSYNALIKGFLKRKKYLEARELFEEMRR-----GGLVADREIYYFFV 718 (751)
Q Consensus 644 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~~~~~l~ 718 (751)
+..++..+...|+.+.+.+.+++++...+. +...|..++.+|.+.|+...|+..|+++.+ .|+.|-..+...+.
T Consensus 156 l~~lae~~~~~~~~~~~~~~l~~Li~~dp~-~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~y~ 234 (280)
T COG3629 156 LTKLAEALIACGRADAVIEHLERLIELDPY-DEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRALYE 234 (280)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHHHH
Confidence 444555555555555555555555555433 555555555555555555555555555443 35555544444333
No 297
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=91.23 E-value=0.43 Score=29.65 Aligned_cols=29 Identities=24% Similarity=0.261 Sum_probs=24.8
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 004470 186 HVFDIFFQVLVEARKLNEARKLFEKLLNY 214 (751)
Q Consensus 186 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 214 (751)
.++..++.++...|++++|++.|+++++.
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l 30 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALEL 30 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 46788999999999999999999999876
No 298
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=91.20 E-value=0.49 Score=30.10 Aligned_cols=27 Identities=22% Similarity=0.301 Sum_probs=20.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004470 678 SYNALIKGFLKRKKYLEARELFEEMRR 704 (751)
Q Consensus 678 ~~~~l~~~~~~~g~~~~A~~~~~~~~~ 704 (751)
+|..|+..|.+.|++++|++++++++.
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~ 27 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALA 27 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 467788888888888888888888553
No 299
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=91.17 E-value=31 Score=39.09 Aligned_cols=189 Identities=11% Similarity=0.111 Sum_probs=113.5
Q ss_pred HHHHHHHhhhhCC--CCC--hhHHHHHHHHHH-hcCChHHHHHHHHHHHcCCCCCchhhhHHHHHHHHHhhhcCCCChhh
Q 004470 113 LVLDFFDWACLRR--EPI--LEARCIVVQISV-AAKDLKTAHGLIHDFWAKPNLDASIAFTHFVERLIYTYKDWGSDPHV 187 (751)
Q Consensus 113 ~al~~f~~~~~~~--~~~--~~~~~~~~~~l~-~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 187 (751)
.|+.-++-+.++. ++. ..++..++.+|. ...+++.|+..|++.+....- ..+.+. .-.+
T Consensus 39 ~ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~------~~~~d~----------k~~~ 102 (608)
T PF10345_consen 39 TAIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCER------HRLTDL----------KFRC 102 (608)
T ss_pred HHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccc------cchHHH----------HHHH
Confidence 3455555555332 233 345677888888 678999999999988654311 111111 0123
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhC----CCccCHHhHHHHHHHHHhCCCCHHHHHHHHHhchhcC---CCcCHHHHH
Q 004470 188 FDIFFQVLVEARKLNEARKLFEKLLNY----GLVISVDSCNLFLSRLSNTCDGLRMVVKSFTEFPELG---ICWNTASYN 260 (751)
Q Consensus 188 ~~~l~~~~~~~g~~~~A~~~~~~~~~~----g~~p~~~~~~~ll~~l~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~ 260 (751)
..+|++.+.+.+... |....++.++. +..+-...+..+--.+....++...|.+.++...... ..|-+.++-
T Consensus 103 ~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~ 181 (608)
T PF10345_consen 103 QFLLARIYFKTNPKA-ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLA 181 (608)
T ss_pred HHHHHHHHHhcCHHH-HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHH
Confidence 457788888888877 99999987753 1122223333332223323378999999998875543 233445555
Q ss_pred HHHHHH--HhcCCHHHHHHHHHHHHhcCC---------CCCHHHHHHHHHHHH--hcCCHHHHHHHHHHHH
Q 004470 261 IMIHCL--CRFGKIKEAHLLLLQMELRGC---------SPDVVSFSTIINGYC--YLGELQRVLKLIEEMQ 318 (751)
Q Consensus 261 ~li~~~--~~~g~~~~A~~~~~~m~~~g~---------~p~~~~~~~li~~~~--~~g~~~~A~~~~~~m~ 318 (751)
.++.+. .+.+..+++.+.++++..... .|-..+|..+++.++ ..|+++.+...+.++.
T Consensus 182 ~l~~~~l~l~~~~~~d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq 252 (608)
T PF10345_consen 182 SLSEALLHLRRGSPDDVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQ 252 (608)
T ss_pred HHHHHHHHhcCCCchhHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 555544 456767788888877643211 345667777777665 4677777766666653
No 300
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=91.16 E-value=32 Score=39.23 Aligned_cols=88 Identities=14% Similarity=0.157 Sum_probs=44.2
Q ss_pred HHcCCHHHHHHHHHHHHhCCCCCCHH-------HHHHHHHH-HHhcCChhHHHHHHHHHHHc----CCCCCHhhHHHHHH
Q 004470 547 CKSGEMVKAHELLRDMLDKGLQPSVV-------TFNVLMNG-FCMSGMIEDGEKLLKWMLEK----GLKPNAATYNPLIK 614 (751)
Q Consensus 547 ~~~g~~~~A~~~~~~~~~~~~~p~~~-------~~~~li~~-~~~~g~~~~A~~l~~~~~~~----g~~p~~~~~~~l~~ 614 (751)
....++++|..++.++...-..|+.. .++.|-.. ....|++++|.++.+..... -..+....+.++..
T Consensus 426 ~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~ 505 (894)
T COG2909 426 ASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGE 505 (894)
T ss_pred HHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhH
Confidence 34556666666666654331121111 22222211 12346666666666665543 12233445555666
Q ss_pred HHHHcCCHHHHHHHHHHHHH
Q 004470 615 QHCLRNDMRTTAKIYKGMCA 634 (751)
Q Consensus 615 ~~~~~g~~~~A~~~~~~m~~ 634 (751)
+..-.|++++|..+..+..+
T Consensus 506 a~~~~G~~~~Al~~~~~a~~ 525 (894)
T COG2909 506 AAHIRGELTQALALMQQAEQ 525 (894)
T ss_pred HHHHhchHHHHHHHHHHHHH
Confidence 66666777776666655544
No 301
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=91.00 E-value=4.8 Score=36.86 Aligned_cols=93 Identities=12% Similarity=0.044 Sum_probs=66.6
Q ss_pred HHHHhcCChhHHHHHHHHHHHcCCCCC----HhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHh
Q 004470 579 NGFCMSGMIEDGEKLLKWMLEKGLKPN----AATYNPLIKQHCLRNDMRTTAKIYKGMCAQGITPD-GNTYNILLQGHCK 653 (751)
Q Consensus 579 ~~~~~~g~~~~A~~l~~~~~~~g~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~li~~~~~ 653 (751)
+-+.+.|++++|..-|...++.-.... ...|..-..++.+.+.++.|++--.+.++.+ |+ ......-..+|.+
T Consensus 103 N~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~--pty~kAl~RRAeayek 180 (271)
T KOG4234|consen 103 NELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELN--PTYEKALERRAEAYEK 180 (271)
T ss_pred HHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcC--chhHHHHHHHHHHHHh
Confidence 446678999999999998888622111 2445555667788889999998888888754 42 3333344667888
Q ss_pred cCCHHHHHHHHHHHHHCCCC
Q 004470 654 ARNMKEAWFLHKEMVQKGFN 673 (751)
Q Consensus 654 ~g~~~~A~~~~~~~~~~~~~ 673 (751)
...+++|+.=|+++.+..+.
T Consensus 181 ~ek~eealeDyKki~E~dPs 200 (271)
T KOG4234|consen 181 MEKYEEALEDYKKILESDPS 200 (271)
T ss_pred hhhHHHHHHHHHHHHHhCcc
Confidence 88999999999999887544
No 302
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=90.78 E-value=2.6 Score=38.71 Aligned_cols=61 Identities=10% Similarity=0.035 Sum_probs=30.3
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 004470 608 TYNPLIKQHCLRNDMRTTAKIYKGMCAQGITPD--GNTYNILLQGHCKARNMKEAWFLHKEMV 668 (751)
Q Consensus 608 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~~~ 668 (751)
.+..+...|++.|+.+.|.+.|.++.+....+. ...+-.+|......|++..+.....++.
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~ 100 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAE 100 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 344555555555555555555555555433322 2223444555555555555555554444
No 303
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=90.65 E-value=26 Score=37.21 Aligned_cols=95 Identities=8% Similarity=0.036 Sum_probs=43.0
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 004470 500 NIYTYNSIVNGLCKAGNILQAVKLMEDMEVAGFHPDTFTYTTIMDAYCKSGEMVKAHELLRDMLDKGLQPSVVTFNVLMN 579 (751)
Q Consensus 500 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~ 579 (751)
|....-+++..+....+..-...+..+|...| .+...|..+++.|... ..++-..+++++.+..+ .|++.-..|+.
T Consensus 65 ~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~df-nDvv~~ReLa~ 140 (711)
T COG1747 65 DDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDF-NDVVIGRELAD 140 (711)
T ss_pred cchHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcc-hhHHHHHHHHH
Confidence 33444444444444444444555555555443 3444455555555444 33444445555444432 13333333333
Q ss_pred HHHhcCChhHHHHHHHHHHH
Q 004470 580 GFCMSGMIEDGEKLLKWMLE 599 (751)
Q Consensus 580 ~~~~~g~~~~A~~l~~~~~~ 599 (751)
-|-+ ++.+.+..+|.++..
T Consensus 141 ~yEk-ik~sk~a~~f~Ka~y 159 (711)
T COG1747 141 KYEK-IKKSKAAEFFGKALY 159 (711)
T ss_pred HHHH-hchhhHHHHHHHHHH
Confidence 3333 444555555554443
No 304
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=90.61 E-value=21 Score=36.05 Aligned_cols=77 Identities=17% Similarity=0.215 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC---------
Q 004470 659 EAWFLHKEMVQKGFNLTTSSYNALIKGFLK----RKKYLEARELFEEMRRGGLVADREIYYFFVDINFEEG--------- 725 (751)
Q Consensus 659 ~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--------- 725 (751)
.|...+.++-..+ +......+...|.. ..+.++|..+|.+..+.|. ......+. .+...|
T Consensus 173 ~A~~~~~~aa~~~---~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g~---~~a~~~~~-~~~~~g~g~~~~~~~ 245 (292)
T COG0790 173 KALYLYRKAAELG---NPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQGD---GAACYNLG-LMYLNGEGVKKAAFL 245 (292)
T ss_pred hHHHHHHHHHHhc---CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCC---HHHHHHHH-HHHhcCCCchhhhhc
Confidence 5666666666655 34444445544433 2366677777777776653 33333333 444444
Q ss_pred ------ChhHHHHHHHHHHHcCC
Q 004470 726 ------NTEITLELCDAAIECYL 742 (751)
Q Consensus 726 ------~~~~A~~~~~~~~~~~~ 742 (751)
+...|..++..+.+.+.
T Consensus 246 ~~~~~~~~~~a~~~~~~~~~~~~ 268 (292)
T COG0790 246 TAAKEEDKKQALEWLQKACELGF 268 (292)
T ss_pred ccccCCCHHHHHHHHHHHHHcCC
Confidence 66667777766666554
No 305
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=90.14 E-value=14 Score=33.35 Aligned_cols=130 Identities=11% Similarity=0.113 Sum_probs=70.2
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 004470 277 LLLLQMELRGCSPDVVSFSTIINGYCYLGELQRVLKLIEEMQIKGLKPNPYTYNSVVRLLCKTSKVVEAETILREMMNQG 356 (751)
Q Consensus 277 ~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 356 (751)
++++.+.+.++.|+...|..+|+.+.+.|++... ..+...++-+|.......+-.+. +.+..+.++=-+|.++
T Consensus 15 EYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L----~qllq~~Vi~DSk~lA~~LLs~~--~~~~~~~Ql~lDMLkR- 87 (167)
T PF07035_consen 15 EYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQL----HQLLQYHVIPDSKPLACQLLSLG--NQYPPAYQLGLDMLKR- 87 (167)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHH----HHHHhhcccCCcHHHHHHHHHhH--ccChHHHHHHHHHHHH-
Confidence 4455556667777777788888888877776543 33444555556555544442222 2334455554455443
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 004470 357 IVPDNVIYTTLIDGFCKMGNVAAAYRLFDEMRGLNIIPDLLTYTAIICGFCLTGKMVEAEKLFH 420 (751)
Q Consensus 357 ~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 420 (751)
=...+..+++.+...|++-+|.++.+..... +......++.+..+.++..-=..+++
T Consensus 88 ---L~~~~~~iievLL~~g~vl~ALr~ar~~~~~----~~~~~~~fLeAA~~~~D~~lf~~V~~ 144 (167)
T PF07035_consen 88 ---LGTAYEEIIEVLLSKGQVLEALRYARQYHKV----DSVPARKFLEAAANSNDDQLFYAVFR 144 (167)
T ss_pred ---hhhhHHHHHHHHHhCCCHHHHHHHHHHcCCc----ccCCHHHHHHHHHHcCCHHHHHHHHH
Confidence 0113555666777777777777777664332 11222344445545554443333333
No 306
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=89.81 E-value=4.2 Score=37.39 Aligned_cols=63 Identities=14% Similarity=0.181 Sum_probs=44.3
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCH--hhHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 004470 572 VTFNVLMNGFCMSGMIEDGEKLLKWMLEKGLKPNA--ATYNPLIKQHCLRNDMRTTAKIYKGMCA 634 (751)
Q Consensus 572 ~~~~~li~~~~~~g~~~~A~~l~~~~~~~g~~p~~--~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 634 (751)
..+..+.+.|++.|+.++|.+.+.++.+....+.. ..+-.++......+++..+.....++..
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~ 101 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAES 101 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 45677788888888888888888887776444433 3456667777777777777777766654
No 307
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=89.55 E-value=1.1 Score=27.92 Aligned_cols=28 Identities=32% Similarity=0.470 Sum_probs=13.9
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 004470 713 IYYFFVDINFEEGNTEITLELCDAAIEC 740 (751)
Q Consensus 713 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 740 (751)
.|..++.++...|++++|++.++++++.
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~~ 30 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALEL 30 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHHH
Confidence 3444555555555555555555555543
No 308
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=89.37 E-value=12 Score=33.42 Aligned_cols=83 Identities=11% Similarity=0.023 Sum_probs=58.6
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHcCCCCCchhhhHHHHHHHHHhhhcCCCChhhHHHHHHHHHhcCChhHHHHHHHH
Q 004470 131 ARCIVVQISVAAKDLKTAHGLIHDFWAKPNLDASIAFTHFVERLIYTYKDWGSDPHVFDIFFQVLVEARKLNEARKLFEK 210 (751)
Q Consensus 131 ~~~~~~~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 210 (751)
+...++..-...++.+++..+|..+.... |..+.+-..-+..+.+.|++.+|..+|+.
T Consensus 12 gLie~~~~al~~~~~~D~e~lL~ALrvLR----------------------P~~~e~~~~~~~l~i~r~~w~dA~rlLr~ 69 (160)
T PF09613_consen 12 GLIEVLSVALRLGDPDDAEALLDALRVLR----------------------PEFPELDLFDGWLHIVRGDWDDALRLLRE 69 (160)
T ss_pred HHHHHHHHHHccCChHHHHHHHHHHHHhC----------------------CCchHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 34444455556678888888887765443 55555556667788999999999999999
Q ss_pred HHhCCCccCHHhHHHHHHHHHhCCCCH
Q 004470 211 LLNYGLVISVDSCNLFLSRLSNTCDGL 237 (751)
Q Consensus 211 ~~~~g~~p~~~~~~~ll~~l~~~~~~~ 237 (751)
+.+. .|....+..++..+....|+.
T Consensus 70 l~~~--~~~~p~~kALlA~CL~~~~D~ 94 (160)
T PF09613_consen 70 LEER--APGFPYAKALLALCLYALGDP 94 (160)
T ss_pred Hhcc--CCCChHHHHHHHHHHHHcCCh
Confidence 8776 466666677777776555543
No 309
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=89.03 E-value=18 Score=33.20 Aligned_cols=89 Identities=13% Similarity=0.081 Sum_probs=62.4
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHCCCCCCHHH-----HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 004470 613 IKQHCLRNDMRTTAKIYKGMCAQGITPDGNT-----YNILLQGHCKARNMKEAWFLHKEMVQKGFNLTTSSYNALIKGFL 687 (751)
Q Consensus 613 ~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~-----~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~ 687 (751)
...+...+++++|..-++..+.. |.... --.|.+.....|.+|+|+++++...+.+. .......-++++.
T Consensus 96 Ak~~ve~~~~d~A~aqL~~~l~~---t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w--~~~~~elrGDill 170 (207)
T COG2976 96 AKAEVEANNLDKAEAQLKQALAQ---TKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESW--AAIVAELRGDILL 170 (207)
T ss_pred HHHHHhhccHHHHHHHHHHHHcc---chhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccH--HHHHHHHhhhHHH
Confidence 34567788888888888877652 22222 23345667788889999988887765543 2334455678888
Q ss_pred hcCCHHHHHHHHHHHHHCC
Q 004470 688 KRKKYLEARELFEEMRRGG 706 (751)
Q Consensus 688 ~~g~~~~A~~~~~~~~~~~ 706 (751)
..|+-++|+.-|++.++.+
T Consensus 171 ~kg~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 171 AKGDKQEARAAYEKALESD 189 (207)
T ss_pred HcCchHHHHHHHHHHHHcc
Confidence 8999999999999988864
No 310
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=88.95 E-value=4.4 Score=38.50 Aligned_cols=93 Identities=17% Similarity=0.095 Sum_probs=58.5
Q ss_pred hcCCHHHHHHHHHHHHH----CCCCCC--HHHHHHHHHHHHhcCCH-------HHHHHHHHHHHHCCCCC-----CHHHH
Q 004470 653 KARNMKEAWFLHKEMVQ----KGFNLT--TSSYNALIKGFLKRKKY-------LEARELFEEMRRGGLVA-----DREIY 714 (751)
Q Consensus 653 ~~g~~~~A~~~~~~~~~----~~~~p~--~~~~~~l~~~~~~~g~~-------~~A~~~~~~~~~~~~~~-----~~~~~ 714 (751)
....+++|++.|.-++- .+.++. ...+..++|.|...|+- ..|.+.|+++.+..-.| +..+.
T Consensus 89 ~~Rt~~~ai~~YkLAll~~~~~~~~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~ 168 (214)
T PF09986_consen 89 GERTLEEAIESYKLALLCAQIKKEKPSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLL 168 (214)
T ss_pred CCCCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHH
Confidence 34456666665554432 222333 34666778888877773 44666666666533221 23455
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHcCCCCC
Q 004470 715 YFFVDINFEEGNTEITLELCDAAIECYLVGK 745 (751)
Q Consensus 715 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 745 (751)
..++....+.|+.++|.+++.+++..+-...
T Consensus 169 YLigeL~rrlg~~~eA~~~fs~vi~~~~~s~ 199 (214)
T PF09986_consen 169 YLIGELNRRLGNYDEAKRWFSRVIGSKKASK 199 (214)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHcCCCCCC
Confidence 5677888899999999999999988775543
No 311
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=88.85 E-value=2.2 Score=38.46 Aligned_cols=61 Identities=10% Similarity=0.020 Sum_probs=36.9
Q ss_pred CCChhhHHHHHHHHHhcCC-----------hhHHHHHHHHHHhCCCccCHHhHHHHHHHHHhCCCCHHHHHHHHHhchhc
Q 004470 182 GSDPHVFDIFFQVLVEARK-----------LNEARKLFEKLLNYGLVISVDSCNLFLSRLSNTCDGLRMVVKSFTEFPEL 250 (751)
Q Consensus 182 ~~~~~~~~~l~~~~~~~g~-----------~~~A~~~~~~~~~~g~~p~~~~~~~ll~~l~~~~~~~~~a~~~~~~~~~~ 250 (751)
|....++..|+.+|...+. +++|.+.|+++... .|++..|+.-|.... +|-+++.++.+.
T Consensus 66 P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~~--~P~ne~Y~ksLe~~~-------kap~lh~e~~~~ 136 (186)
T PF06552_consen 66 PNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVDE--DPNNELYRKSLEMAA-------KAPELHMEIHKQ 136 (186)
T ss_dssp TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH---TT-HHHHHHHHHHH-------THHHHHHHHHHS
T ss_pred CchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHhc--CCCcHHHHHHHHHHH-------hhHHHHHHHHHH
Confidence 6667778888888876553 55566666666655 677777776665542 355555555444
Q ss_pred C
Q 004470 251 G 251 (751)
Q Consensus 251 ~ 251 (751)
+
T Consensus 137 ~ 137 (186)
T PF06552_consen 137 G 137 (186)
T ss_dssp S
T ss_pred H
Confidence 3
No 312
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=88.48 E-value=17 Score=37.86 Aligned_cols=132 Identities=10% Similarity=0.015 Sum_probs=89.9
Q ss_pred ChHHHHHHHHhhhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHcCCCCCchhhhHHHHHHHHHhh--h------cC
Q 004470 110 DYRLVLDFFDWACLRREPILEARCIVVQISVAAKDLKTAHGLIHDFWAKPNLDASIAFTHFVERLIYTY--K------DW 181 (751)
Q Consensus 110 ~~~~al~~f~~~~~~~~~~~~~~~~~~~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~--~------~~ 181 (751)
||+.-..+. .+.|-|++++..++.++..+|+.+.|..++++++-.- ...+...|..+.... + ..
T Consensus 25 Dp~~l~~ll----~~~PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~----e~~~~~~F~~~~~~~~~g~~rL~~~~ 96 (360)
T PF04910_consen 25 DPNALINLL----QKNPYHIDTLLQLSEVYRQQGDHAQANDLLERALFAF----ERAFHPSFSPFRSNLTSGNCRLDYRR 96 (360)
T ss_pred CHHHHHHHH----HHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH----HHHHHHHhhhhhcccccCccccCCcc
Confidence 776544443 4578899999999999999999999999999987421 011111111100000 0 01
Q ss_pred CCChhh---HHHHHHHHHhcCChhHHHHHHHHHHhCCCccCHHhHHHHHHHHHhCCCCHHHHHHHHHhchh
Q 004470 182 GSDPHV---FDIFFQVLVEARKLNEARKLFEKLLNYGLVISVDSCNLFLSRLSNTCDGLRMVVKSFTEFPE 249 (751)
Q Consensus 182 ~~~~~~---~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~l~~~~~~~~~a~~~~~~~~~ 249 (751)
+.|-.. ...-+..+.+.|-+..|+++.+-+...++.-|...+...+.-+..+.++++--+++++....
T Consensus 97 ~eNR~fflal~r~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~ 167 (360)
T PF04910_consen 97 PENRQFFLALFRYIQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLA 167 (360)
T ss_pred ccchHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhh
Confidence 123222 33457788899999999999999999876667777777788887788888888877776544
No 313
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=88.47 E-value=86 Score=40.23 Aligned_cols=317 Identities=10% Similarity=0.089 Sum_probs=168.3
Q ss_pred HHHHHHHhcCCHHHHHHHHHHH----HHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 004470 401 AIICGFCLTGKMVEAEKLFHEM----LGRGLEPDEIVYTALIDGYCKAGGMKKAFSLHNNMVHMRLTPNVVTYTALADGL 476 (751)
Q Consensus 401 ~li~~~~~~g~~~~A~~~~~~m----~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~ 476 (751)
.+..+-.+.+.+.+|+..++.- .+. .-....|-.+...|...+++|....+...-.. .|+ ....|-..
T Consensus 1388 tLa~aSfrc~~y~RalmylEs~~~~ek~~--~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a---~~s---l~~qil~~ 1459 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESHRSTEKEK--ETEEALYFLLQNLYGSIHDPDGVEGVSARRFA---DPS---LYQQILEH 1459 (2382)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhccccchh--HHHHHHHHHHHHHHHhcCCcchhhhHHHHhhc---Ccc---HHHHHHHH
Confidence 3344556678888888888773 211 11223444555588888888888777664211 122 22334456
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHH-HHHHHHcCCHHHH
Q 004470 477 CKSGELETANELLHEMCRKGLQLNIYTYNSIVNGLCKAGNILQAVKLMEDMEVAGFHPDTFTYTTI-MDAYCKSGEMVKA 555 (751)
Q Consensus 477 ~~~g~~~~A~~l~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l-i~~~~~~g~~~~A 555 (751)
...|++..|...|+.+.+.+.. ...+++-++......|.++..+...+...... .+....++++ ..+--+.+++|..
T Consensus 1460 e~~g~~~da~~Cye~~~q~~p~-~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~~-se~~~~~~s~~~eaaW~l~qwD~~ 1537 (2382)
T KOG0890|consen 1460 EASGNWADAAACYERLIQKDPD-KEKHHSGVLKSMLAIQHLSTEILHLDGLIINR-SEEVDELNSLGVEAAWRLSQWDLL 1537 (2382)
T ss_pred HhhccHHHHHHHHHHhhcCCCc-cccchhhHHHhhhcccchhHHHhhhcchhhcc-CHHHHHHHHHHHHHHhhhcchhhh
Confidence 7789999999999999887432 46677777777777788888777666655432 3333334333 2333566777766
Q ss_pred HHHHHHHHhCCCCCCHHHHHH--HHHHHHhcCChhH--HHHHHHHHHHcCCCC---------CHhhHHHHHHHHHHcCCH
Q 004470 556 HELLRDMLDKGLQPSVVTFNV--LMNGFCMSGMIED--GEKLLKWMLEKGLKP---------NAATYNPLIKQHCLRNDM 622 (751)
Q Consensus 556 ~~~~~~~~~~~~~p~~~~~~~--li~~~~~~g~~~~--A~~l~~~~~~~g~~p---------~~~~~~~l~~~~~~~g~~ 622 (751)
...+. +. +..+|.. ++..+.+..+-+. -.++.+.+.+.-+.| =...|..++..+.-..
T Consensus 1538 e~~l~---~~----n~e~w~~~~~g~~ll~~~~kD~~~~~~~i~~~r~~~i~~lsa~s~~~Sy~~~Y~~~~kLH~l~e-- 1608 (2382)
T KOG0890|consen 1538 ESYLS---DR----NIEYWSVESIGKLLLRNKKKDEIATLDLIENSRELVIENLSACSIEGSYVRSYEILMKLHLLLE-- 1608 (2382)
T ss_pred hhhhh---cc----cccchhHHHHHHHHHhhcccchhhHHHHHHHHHHHhhhhHHHhhccchHHHHHHHHHHHHHHHH--
Confidence 66554 11 2222222 2222222221111 112222222221111 0122333333321111
Q ss_pred HHHHHHHHHHHHCCCCCCHHH------HHHHHHHHHhcCCHHHHHHHHHH-HHHCCCCC-----CHHHHHHHHHHHHhcC
Q 004470 623 RTTAKIYKGMCAQGITPDGNT------YNILLQGHCKARNMKEAWFLHKE-MVQKGFNL-----TTSSYNALIKGFLKRK 690 (751)
Q Consensus 623 ~~A~~~~~~m~~~g~~p~~~~------~~~li~~~~~~g~~~~A~~~~~~-~~~~~~~p-----~~~~~~~l~~~~~~~g 690 (751)
-....+.. .+..++..+ |..-+..-....+..+-+--+++ +.+....| -..+|...++...+.|
T Consensus 1609 --l~~~~~~l--~~~s~~~~s~~~sd~W~~Rl~~tq~s~~~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~aG 1684 (2382)
T KOG0890|consen 1609 --LENSIEEL--KKVSYDEDSANNSDNWKNRLERTQPSFRIKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLAG 1684 (2382)
T ss_pred --HHHHHHHh--hccCccccccccchhHHHHHHHhchhHHHHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhcc
Confidence 01111111 112222111 11111110011112222211221 22211111 3468889999999999
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCC
Q 004470 691 KYLEARELFEEMRRGGLVADREIYYFFVDINFEEGNTEITLELCDAAIECYLV 743 (751)
Q Consensus 691 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 743 (751)
+++.|...+-.+.+.+ -+..+-..+..+...|+...|+.++++.+++...
T Consensus 1685 ~~q~A~nall~A~e~r---~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~~ 1734 (2382)
T KOG0890|consen 1685 HLQRAQNALLNAKESR---LPEIVLERAKLLWQTGDELNALSVLQEILSKNFP 1734 (2382)
T ss_pred cHHHHHHHHHhhhhcc---cchHHHHHHHHHHhhccHHHHHHHHHHHHHhhcc
Confidence 9999999988888865 3456667888999999999999999999988754
No 314
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=88.37 E-value=0.83 Score=28.01 Aligned_cols=29 Identities=17% Similarity=0.324 Sum_probs=21.3
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHcCC
Q 004470 714 YYFFVDINFEEGNTEITLELCDAAIECYL 742 (751)
Q Consensus 714 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 742 (751)
+..++.++.+.|++++|.+.++++++.++
T Consensus 3 ~~~~a~~~~~~g~~~~A~~~~~~~~~~~P 31 (33)
T PF13174_consen 3 LYRLARCYYKLGDYDEAIEYFQRLIKRYP 31 (33)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHCc
Confidence 45566777777888888888888777654
No 315
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=88.27 E-value=31 Score=34.80 Aligned_cols=47 Identities=15% Similarity=0.077 Sum_probs=21.7
Q ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHHHh--cC----CHHHHHHHHHHHHHC
Q 004470 274 EAHLLLLQMELRGCSPDVVSFSTIINGYCY--LG----ELQRVLKLIEEMQIK 320 (751)
Q Consensus 274 ~A~~~~~~m~~~g~~p~~~~~~~li~~~~~--~g----~~~~A~~~~~~m~~~ 320 (751)
+.+.+++.|.+.|+.-+..+|-+....... .. ...+|..+++.|++.
T Consensus 80 ~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~ 132 (297)
T PF13170_consen 80 EVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKK 132 (297)
T ss_pred HHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHh
Confidence 334455566666665555444332221111 11 234455566666554
No 316
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=88.20 E-value=39 Score=35.94 Aligned_cols=167 Identities=14% Similarity=0.063 Sum_probs=111.0
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 004470 463 TPNVVTYTALADGLCKSGELETANELLHEMCRKGLQLNIYTYNSIVNGLCKAGNILQAVKLMEDMEVAGFHPDTFTYTTI 542 (751)
Q Consensus 463 ~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 542 (751)
..|.....+++..+...-++.-...+..+|..-| -+-..|..++++|... ..++-..+|+++.+..+ .|++.-..|
T Consensus 63 ~l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~df-nDvv~~ReL 138 (711)
T COG1747 63 LLDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDF-NDVVIGREL 138 (711)
T ss_pred cccchHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcc-hhHHHHHHH
Confidence 3467778889999999888999999999998875 3667888999999888 56788899999988763 455555566
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhCCCCC--C---HHHHHHHHHHHHhcCChhHHHHHHHHHHHc-CCCCCHhhHHHHHHHH
Q 004470 543 MDAYCKSGEMVKAHELLRDMLDKGLQP--S---VVTFNVLMNGFCMSGMIEDGEKLLKWMLEK-GLKPNAATYNPLIKQH 616 (751)
Q Consensus 543 i~~~~~~g~~~~A~~~~~~~~~~~~~p--~---~~~~~~li~~~~~~g~~~~A~~l~~~~~~~-g~~p~~~~~~~l~~~~ 616 (751)
...|.+ ++.+.+..+|.++...=++. + ...|.-|...- ..+.+....+..++... |...-.+.+.-+-.-|
T Consensus 139 a~~yEk-ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~i--~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Y 215 (711)
T COG1747 139 ADKYEK-IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPELI--GDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKY 215 (711)
T ss_pred HHHHHH-hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHhc--cccHHHHHHHHHHHHHhhccchHHHHHHHHHHHh
Confidence 666655 88889999998887642221 1 12343333211 23455555555555443 3333344445555556
Q ss_pred HHcCCHHHHHHHHHHHHHCC
Q 004470 617 CLRNDMRTTAKIYKGMCAQG 636 (751)
Q Consensus 617 ~~~g~~~~A~~~~~~m~~~g 636 (751)
....++.+|++++..+++.+
T Consensus 216 s~~eN~~eai~Ilk~il~~d 235 (711)
T COG1747 216 SENENWTEAIRILKHILEHD 235 (711)
T ss_pred ccccCHHHHHHHHHHHhhhc
Confidence 66667777777777666643
No 317
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=88.19 E-value=35 Score=35.39 Aligned_cols=68 Identities=6% Similarity=-0.017 Sum_probs=52.1
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCC---CHhhHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 004470 568 QPSVVTFNVLMNGFCMSGMIEDGEKLLKWMLEKGLKP---NAATYNPLIKQHCLRNDMRTTAKIYKGMCAQ 635 (751)
Q Consensus 568 ~p~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~g~~p---~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 635 (751)
.....+|..++..+.+.|.++.|...+..+...+... +......-+..+-..|+..+|...+++.++.
T Consensus 143 ~~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~ 213 (352)
T PF02259_consen 143 EELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKC 213 (352)
T ss_pred hHHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 3455678889999999999999999999988754221 3344445566677899999999999988873
No 318
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=87.81 E-value=41 Score=35.74 Aligned_cols=99 Identities=15% Similarity=0.148 Sum_probs=66.5
Q ss_pred CCCHHHH-HHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh--cCChhHHHHHHHHHHHc-CCCCCHhh
Q 004470 533 HPDTFTY-TTIMDAYCKSGEMVKAHELLRDMLDKGLQPSVVTFNVLMNGFCM--SGMIEDGEKLLKWMLEK-GLKPNAAT 608 (751)
Q Consensus 533 ~~~~~~~-~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~--~g~~~~A~~l~~~~~~~-g~~p~~~~ 608 (751)
.|+..++ +.+++.+-+.|-..+|...+..+... .+|+...|..+|+.-.. .-+...+..+++.|... | .|+..
T Consensus 456 ~~~~~tl~s~~l~~~~e~~~~~~ark~y~~l~~l-pp~sl~l~r~miq~e~~~~sc~l~~~r~~yd~a~~~fg--~d~~l 532 (568)
T KOG2396|consen 456 GADSVTLKSKYLDWAYESGGYKKARKVYKSLQEL-PPFSLDLFRKMIQFEKEQESCNLANIREYYDRALREFG--ADSDL 532 (568)
T ss_pred CCceeehhHHHHHHHHHhcchHHHHHHHHHHHhC-CCccHHHHHHHHHHHhhHhhcCchHHHHHHHHHHHHhC--CChHH
Confidence 4554443 45667777778888888888888776 46677777777764322 12367777788877754 4 46666
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH
Q 004470 609 YNPLIKQHCLRNDMRTTAKIYKGMCA 634 (751)
Q Consensus 609 ~~~l~~~~~~~g~~~~A~~~~~~m~~ 634 (751)
|...+.--...|..+.+-.++.++.+
T Consensus 533 w~~y~~~e~~~g~~en~~~~~~ra~k 558 (568)
T KOG2396|consen 533 WMDYMKEELPLGRPENCGQIYWRAMK 558 (568)
T ss_pred HHHHHHhhccCCCcccccHHHHHHHH
Confidence 76666665677888777777776665
No 319
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=87.80 E-value=5.4 Score=42.83 Aligned_cols=26 Identities=12% Similarity=0.112 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHH
Q 004470 257 ASYNIMIHCLCRFGKIKEAHLLLLQM 282 (751)
Q Consensus 257 ~~~~~li~~~~~~g~~~~A~~~~~~m 282 (751)
.-|..|.++..+.|++..|.+.|...
T Consensus 667 ~Kw~~Lg~~al~~~~l~lA~EC~~~a 692 (794)
T KOG0276|consen 667 VKWRQLGDAALSAGELPLASECFLRA 692 (794)
T ss_pred HHHHHHHHHHhhcccchhHHHHHHhh
Confidence 34555555555555555555554443
No 320
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=87.36 E-value=19 Score=40.59 Aligned_cols=45 Identities=13% Similarity=0.117 Sum_probs=27.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc
Q 004470 329 YNSVVRLLCKTSKVVEAETILREMMNQGIVPDNVIYTTLIDGFCKM 374 (751)
Q Consensus 329 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~ 374 (751)
.=.+|-.|.+.|.+++|.++..+..+. .......+...+..|...
T Consensus 114 ~Wa~Iyy~LR~G~~~~A~~~~~~~~~~-~~~~~~~f~~~l~~~~~s 158 (613)
T PF04097_consen 114 IWALIYYCLRCGDYDEALEVANENRNQ-FQKIERSFPTYLKAYASS 158 (613)
T ss_dssp HHHHHHHHHTTT-HHHHHHHHHHTGGG-S-TTTTHHHHHHHHCTTT
T ss_pred cHHHHHHHHhcCCHHHHHHHHHHhhhh-hcchhHHHHHHHHHHHhC
Confidence 334566777888888888888554443 333445566666666654
No 321
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=86.28 E-value=1.3 Score=29.66 Aligned_cols=27 Identities=26% Similarity=0.391 Sum_probs=24.0
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhCCC
Q 004470 190 IFFQVLVEARKLNEARKLFEKLLNYGL 216 (751)
Q Consensus 190 ~l~~~~~~~g~~~~A~~~~~~~~~~g~ 216 (751)
-|+++|...|+.+.|.+++++++..|-
T Consensus 4 dLA~ayie~Gd~e~Ar~lL~evl~~~~ 30 (44)
T TIGR03504 4 DLARAYIEMGDLEGARELLEEVIEEGD 30 (44)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHcCC
Confidence 489999999999999999999997653
No 322
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=86.27 E-value=1.7 Score=28.31 Aligned_cols=30 Identities=23% Similarity=0.232 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHcC
Q 004470 712 EIYYFFVDINFEEGNTEITLELCDAAIECY 741 (751)
Q Consensus 712 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 741 (751)
.+++.++..|...|++++|.++++++++..
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 32 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALEIR 32 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHHHH
Confidence 456677777888888888888888777644
No 323
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=85.99 E-value=64 Score=36.10 Aligned_cols=121 Identities=10% Similarity=-0.010 Sum_probs=72.9
Q ss_pred HHHHcCCHHHHHHHHHHHHHCCCCCCHH--HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 004470 615 QHCLRNDMRTTAKIYKGMCAQGITPDGN--TYNILLQGHCKARNMKEAWFLHKEMVQKGFNLTTSSYNALIKGFLKRKKY 692 (751)
Q Consensus 615 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~--~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~ 692 (751)
++..-|+-++|..+.++|.... .|-.. -.-.+..+|+-.|+.....+++.-+++. ...|..-+..+.-++.-..++
T Consensus 510 aL~~ygrqe~Ad~lI~el~~dk-dpilR~~Gm~t~alAy~GTgnnkair~lLh~aVsD-~nDDVrRaAVialGFVl~~dp 587 (929)
T KOG2062|consen 510 ALVVYGRQEDADPLIKELLRDK-DPILRYGGMYTLALAYVGTGNNKAIRRLLHVAVSD-VNDDVRRAAVIALGFVLFRDP 587 (929)
T ss_pred HHHHhhhhhhhHHHHHHHhcCC-chhhhhhhHHHHHHHHhccCchhhHHHhhcccccc-cchHHHHHHHHHheeeEecCh
Confidence 3556677778888888887642 22111 1234556677777777777776666553 344555555555566666778
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHH--HHHHhcCChhHHHHHHHHHHH
Q 004470 693 LEARELFEEMRRGGLVADREIYYFFV--DINFEEGNTEITLELCDAAIE 739 (751)
Q Consensus 693 ~~A~~~~~~~~~~~~~~~~~~~~~l~--~~~~~~g~~~~A~~~~~~~~~ 739 (751)
+....+.+-+.+. ..|....-..++ -++...| ..+|+.+++.+..
T Consensus 588 ~~~~s~V~lLses-~N~HVRyGaA~ALGIaCAGtG-~~eAi~lLepl~~ 634 (929)
T KOG2062|consen 588 EQLPSTVSLLSES-YNPHVRYGAAMALGIACAGTG-LKEAINLLEPLTS 634 (929)
T ss_pred hhchHHHHHHhhh-cChhhhhhHHHHHhhhhcCCC-cHHHHHHHhhhhc
Confidence 8877777766663 344333222222 2333334 5889999988875
No 324
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=85.88 E-value=0.96 Score=27.72 Aligned_cols=31 Identities=13% Similarity=0.190 Sum_probs=25.4
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhCCCccC
Q 004470 187 VFDIFFQVLVEARKLNEARKLFEKLLNYGLVIS 219 (751)
Q Consensus 187 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~ 219 (751)
++..++.++.+.|++++|.+.|+++++. .|+
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~--~P~ 32 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKR--YPD 32 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHH--STT
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHH--CcC
Confidence 3456888899999999999999999876 454
No 325
>PRK09687 putative lyase; Provisional
Probab=85.63 E-value=41 Score=33.61 Aligned_cols=14 Identities=0% Similarity=0.055 Sum_probs=5.6
Q ss_pred HHHHHHHHHHHcCC
Q 004470 363 IYTTLIDGFCKMGN 376 (751)
Q Consensus 363 ~~~~li~~~~~~g~ 376 (751)
+-...+.++.+.|+
T Consensus 144 VR~~a~~aLg~~~~ 157 (280)
T PRK09687 144 VRFAVAFALSVIND 157 (280)
T ss_pred HHHHHHHHHhccCC
Confidence 33334444444443
No 326
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=85.56 E-value=2.2 Score=26.39 Aligned_cols=30 Identities=33% Similarity=0.396 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHcC
Q 004470 712 EIYYFFVDINFEEGNTEITLELCDAAIECY 741 (751)
Q Consensus 712 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 741 (751)
.+|..++..+.+.|++++|.+.++++++..
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~ 31 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALELN 31 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 356777888888888888888888887653
No 327
>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]
Probab=85.30 E-value=44 Score=33.61 Aligned_cols=49 Identities=20% Similarity=0.361 Sum_probs=28.7
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHh-----cCCCCCHH-HHHHHHHHHHh-cCCHHHH
Q 004470 262 MIHCLCRFGKIKEAHLLLLQMEL-----RGCSPDVV-SFSTIINGYCY-LGELQRV 310 (751)
Q Consensus 262 li~~~~~~g~~~~A~~~~~~m~~-----~g~~p~~~-~~~~li~~~~~-~g~~~~A 310 (751)
.++.+...|+..++.+.+++..+ .|++|++. .|+.+-.-|.+ .|++...
T Consensus 121 ~~r~~L~i~DLk~~kk~ldd~~~~ld~~~~v~~~Vh~~fY~lssqYyk~~~d~a~y 176 (380)
T KOG2908|consen 121 IARLKLEINDLKEIKKLLDDLKSMLDSLDGVTSNVHSSFYSLSSQYYKKIGDFASY 176 (380)
T ss_pred HHHHHHhcccHHHHHHHHHHHHHHHhcccCCChhhhhhHHHHHHHHHHHHHhHHHH
Confidence 44455567777777777777665 56666554 34555444443 4555544
No 328
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=85.21 E-value=1.6 Score=27.06 Aligned_cols=28 Identities=21% Similarity=0.269 Sum_probs=24.9
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 004470 187 VFDIFFQVLVEARKLNEARKLFEKLLNY 214 (751)
Q Consensus 187 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 214 (751)
+|..++.+|...|++++|.+.|++.++.
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~ 30 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALEL 30 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 5778899999999999999999998875
No 329
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=84.80 E-value=2.3 Score=27.71 Aligned_cols=29 Identities=34% Similarity=0.468 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004470 676 TSSYNALIKGFLKRKKYLEARELFEEMRR 704 (751)
Q Consensus 676 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 704 (751)
..+++.|+..|...|++++|..+++++++
T Consensus 2 a~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 2 ASALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 35778888888888999999988888775
No 330
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=84.68 E-value=77 Score=35.90 Aligned_cols=88 Identities=13% Similarity=0.129 Sum_probs=37.7
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCC-CCCHHHHHHHHHHHHh---
Q 004470 403 ICGFCLTGKMVEAEKLFHEMLGRGLEPDEIVYTALIDGYCKAGGMKKAFSLHNNMVHMRL-TPNVVTYTALADGLCK--- 478 (751)
Q Consensus 403 i~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~li~~~~~--- 478 (751)
...+.-.|+++.|++.+-+ ..+...+.+.+...+..|.-.+-.+... ..+..... .|...-+..||..|.+
T Consensus 265 f~~LlLtgqFE~AI~~L~~--~~~~~~dAVH~AIaL~~~gLL~~~~~~~---~~lls~~~~~~~~ln~arLI~~Y~~~F~ 339 (613)
T PF04097_consen 265 FQVLLLTGQFEAAIEFLYR--NEFNRVDAVHFAIALAYYGLLRVSDSSS---APLLSVDPGDPPPLNFARLIGQYTRSFE 339 (613)
T ss_dssp HHHHHHTT-HHHHHHHHHT----T-HHHHHHHHHHHHHTT---------------------------HHHHHHHHHHTTT
T ss_pred HHHHHHHhhHHHHHHHHHh--hccCcccHHHHHHHHHHcCCCCCCCccc---cceeeecCCCCCCcCHHHHHHHHHHHHh
Confidence 3455667888888887766 2233445555555444432211111111 22221110 1112456677777765
Q ss_pred cCCHHHHHHHHHHHHHc
Q 004470 479 SGELETANELLHEMCRK 495 (751)
Q Consensus 479 ~g~~~~A~~l~~~m~~~ 495 (751)
..+..+|.+.+--+...
T Consensus 340 ~td~~~Al~Y~~li~~~ 356 (613)
T PF04097_consen 340 ITDPREALQYLYLICLF 356 (613)
T ss_dssp TT-HHHHHHHHHGGGGS
T ss_pred ccCHHHHHHHHHHHHHc
Confidence 34677777777666544
No 331
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=84.44 E-value=56 Score=34.08 Aligned_cols=100 Identities=13% Similarity=0.069 Sum_probs=69.1
Q ss_pred CHHHHHHH---HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH-hcCCHHHHHHHHHHHHHC------CCCC
Q 004470 640 DGNTYNIL---LQGHCKARNMKEAWFLHKEMVQKGFNLTTSSYNALIKGFL-KRKKYLEARELFEEMRRG------GLVA 709 (751)
Q Consensus 640 ~~~~~~~l---i~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~-~~g~~~~A~~~~~~~~~~------~~~~ 709 (751)
|...|.++ +..+.+.|-+..|.++.+-+.+.++.-|+.....+|+.|. +.++++--+++.+..... ..-|
T Consensus 99 NR~fflal~r~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~~~~~~~~~~lP 178 (360)
T PF04910_consen 99 NRQFFLALFRYIQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLAKCYRNWLSLLP 178 (360)
T ss_pred chHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhhhhhhhhhhhCc
Confidence 44444443 4567788999999999999999887767877777777775 678888888888876542 1133
Q ss_pred CHHHHHHHHHHHHhcCCh---------------hHHHHHHHHHHHcC
Q 004470 710 DREIYYFFVDINFEEGNT---------------EITLELCDAAIECY 741 (751)
Q Consensus 710 ~~~~~~~l~~~~~~~g~~---------------~~A~~~~~~~~~~~ 741 (751)
+-. ...+-++...++. ++|.+.+.+++...
T Consensus 179 n~a--~S~aLA~~~l~~~~~~~~~~~~~~~~~~~~A~~~L~~Ai~~f 223 (360)
T PF04910_consen 179 NFA--FSIALAYFRLEKEESSQSSAQSGRSENSESADEALQKAILRF 223 (360)
T ss_pred cHH--HHHHHHHHHhcCccccccccccccccchhHHHHHHHHHHHHh
Confidence 322 2344456666666 88998888887553
No 332
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=84.42 E-value=11 Score=37.10 Aligned_cols=101 Identities=12% Similarity=0.111 Sum_probs=56.2
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC---CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhhH
Q 004470 533 HPDTFTYTTIMDAYCKSGEMVKAHELLRDMLDKG---LQPSVVTFNVLMNGFCMSGMIEDGEKLLKWMLEKGLKPNAATY 609 (751)
Q Consensus 533 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~---~~p~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~g~~p~~~~~ 609 (751)
+....+...++..-....+++.++..+-++...- ..|+... ...++. +-.-+.++++.++..=+.-|+-||..++
T Consensus 61 ~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~-~~~irl-llky~pq~~i~~l~npIqYGiF~dqf~~ 138 (418)
T KOG4570|consen 61 PVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTI-HTWIRL-LLKYDPQKAIYTLVNPIQYGIFPDQFTF 138 (418)
T ss_pred CcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccH-HHHHHH-HHccChHHHHHHHhCcchhccccchhhH
Confidence 3344444555544445566777776666654320 0111111 111222 2234556777777666666777777777
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHC
Q 004470 610 NPLIKQHCLRNDMRTTAKIYKGMCAQ 635 (751)
Q Consensus 610 ~~l~~~~~~~g~~~~A~~~~~~m~~~ 635 (751)
+.+++.+.+.+++.+|..+.-.|+.+
T Consensus 139 c~l~D~flk~~n~~~aa~vvt~~~~q 164 (418)
T KOG4570|consen 139 CLLMDSFLKKENYKDAASVVTEVMMQ 164 (418)
T ss_pred HHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 77777777777777777766666553
No 333
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=84.40 E-value=9.1 Score=35.45 Aligned_cols=41 Identities=15% Similarity=-0.040 Sum_probs=18.0
Q ss_pred CCHHHHHHHHHHHHHC---CCCCCHHHHHHHHHHHHhcCChhHH
Q 004470 690 KKYLEARELFEEMRRG---GLVADREIYYFFVDINFEEGNTEIT 730 (751)
Q Consensus 690 g~~~~A~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~g~~~~A 730 (751)
.+.++|+.++.++++. +-.+|++.+..|+..+.+.|+++.|
T Consensus 154 rD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~A 197 (203)
T PF11207_consen 154 RDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQA 197 (203)
T ss_pred cCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhh
Confidence 3444444444444431 1133444444444444444444444
No 334
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=84.14 E-value=14 Score=34.25 Aligned_cols=78 Identities=13% Similarity=0.029 Sum_probs=62.5
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC---CCCCCHHHHHHHHHHHHhcCCHHHH
Q 004470 619 RNDMRTTAKIYKGMCAQGITPDGNTYNILLQGHCKARNMKEAWFLHKEMVQK---GFNLTTSSYNALIKGFLKRKKYLEA 695 (751)
Q Consensus 619 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~p~~~~~~~l~~~~~~~g~~~~A 695 (751)
+-.-+.|.+.|-.+...+..-++.....|...|. ..+.++|+.++.++++. +-.+|+..+..|+..+.+.|+++.|
T Consensus 119 r~~d~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~A 197 (203)
T PF11207_consen 119 RFGDQEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQA 197 (203)
T ss_pred ccCcHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhh
Confidence 3345788888888888776667777767666665 67899999999999874 3467899999999999999999988
Q ss_pred HH
Q 004470 696 RE 697 (751)
Q Consensus 696 ~~ 697 (751)
.-
T Consensus 198 Yi 199 (203)
T PF11207_consen 198 YI 199 (203)
T ss_pred hh
Confidence 53
No 335
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=84.13 E-value=63 Score=34.44 Aligned_cols=241 Identities=12% Similarity=0.109 Sum_probs=132.3
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC------CHHHHHHHHHHHHHCC-CC-CCHHHHHHHHHHHHHcCCHHH-
Q 004470 484 TANELLHEMCRKGLQLNIYTYNSIVNGLCKAG------NILQAVKLMEDMEVAG-FH-PDTFTYTTIMDAYCKSGEMVK- 554 (751)
Q Consensus 484 ~A~~l~~~m~~~g~~~~~~~~~~li~~~~~~g------~~~~A~~~~~~~~~~~-~~-~~~~~~~~li~~~~~~g~~~~- 554 (751)
....++++..+. -|+...|+..|..|...- .+.....+++...+.+ .. ....-|..+.-.++......+
T Consensus 300 ~~~~v~ee~v~~--l~t~sm~e~YI~~~lE~~~~~r~~~I~h~~~~~~~~~~~~~l~~~~~~~ys~~~l~~~t~~~~r~~ 377 (568)
T KOG2396|consen 300 RCCAVYEEAVKT--LPTESMWECYITFCLERFTFLRGKRILHTMCVFRKAHELKLLSECLYKQYSVLLLCLNTLNEAREV 377 (568)
T ss_pred HHHHHHHHHHHH--hhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHhccchHhHH
Confidence 334566665543 345556666666554322 3444555565554432 22 234556666666665554333
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC-ChhHH-HHHHHHHHHcCCCCCHhhHHHHHHHHHHcCC-HHHHH--HHH
Q 004470 555 AHELLRDMLDKGLQPSVVTFNVLMNGFCMSG-MIEDG-EKLLKWMLEKGLKPNAATYNPLIKQHCLRND-MRTTA--KIY 629 (751)
Q Consensus 555 A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g-~~~~A-~~l~~~~~~~g~~p~~~~~~~l~~~~~~~g~-~~~A~--~~~ 629 (751)
|..+..+. +..+...|-.-+....+.. +.+-- .++++.....-..+-...|+... .|+ ..... .++
T Consensus 378 a~~l~~e~----f~~s~k~~~~kl~~~~~s~sD~q~~f~~l~n~~r~~~~s~~~~~w~s~~-----~~dsl~~~~~~~Ii 448 (568)
T KOG2396|consen 378 AVKLTTEL----FRDSGKMWQLKLQVLIESKSDFQMLFEELFNHLRKQVCSELLISWASAS-----EGDSLQEDTLDLII 448 (568)
T ss_pred HHHhhHHH----hcchHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHhcchhHHHHHHHh-----hccchhHHHHHHHH
Confidence 33333232 3445555555444444221 22111 12222232221222223333322 222 22211 122
Q ss_pred HHHHHCCCCCCHHH-HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh--cCCHHHHHHHHHHHHH-C
Q 004470 630 KGMCAQGITPDGNT-YNILLQGHCKARNMKEAWFLHKEMVQKGFNLTTSSYNALIKGFLK--RKKYLEARELFEEMRR-G 705 (751)
Q Consensus 630 ~~m~~~g~~p~~~~-~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~--~g~~~~A~~~~~~~~~-~ 705 (751)
...... ..|+..+ -+.+++.+.+.|-.++|.+.+..+... ++|+...|..++..-.. +-+...+.++|+.|.. .
T Consensus 449 ~a~~s~-~~~~~~tl~s~~l~~~~e~~~~~~ark~y~~l~~l-pp~sl~l~r~miq~e~~~~sc~l~~~r~~yd~a~~~f 526 (568)
T KOG2396|consen 449 SALLSV-IGADSVTLKSKYLDWAYESGGYKKARKVYKSLQEL-PPFSLDLFRKMIQFEKEQESCNLANIREYYDRALREF 526 (568)
T ss_pred HHHHHh-cCCceeehhHHHHHHHHHhcchHHHHHHHHHHHhC-CCccHHHHHHHHHHHhhHhhcCchHHHHHHHHHHHHh
Confidence 222332 2455555 356778888899999999999999886 56688888888765432 2348889999999986 5
Q ss_pred CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 004470 706 GLVADREIYYFFVDINFEEGNTEITLELCDAAIE 739 (751)
Q Consensus 706 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 739 (751)
| .|+..|.-....=...|..+.+-.++.++..
T Consensus 527 g--~d~~lw~~y~~~e~~~g~~en~~~~~~ra~k 558 (568)
T KOG2396|consen 527 G--ADSDLWMDYMKEELPLGRPENCGQIYWRAMK 558 (568)
T ss_pred C--CChHHHHHHHHhhccCCCcccccHHHHHHHH
Confidence 6 6777777666555678988888888887764
No 336
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=84.09 E-value=1.4 Score=25.50 Aligned_cols=24 Identities=17% Similarity=0.203 Sum_probs=19.4
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHH
Q 004470 186 HVFDIFFQVLVEARKLNEARKLFE 209 (751)
Q Consensus 186 ~~~~~l~~~~~~~g~~~~A~~~~~ 209 (751)
.+...|+.++...|++++|..+++
T Consensus 2 ~a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 2 RARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHh
Confidence 345678888999999999988775
No 337
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=84.08 E-value=50 Score=33.24 Aligned_cols=80 Identities=16% Similarity=0.147 Sum_probs=44.0
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC--------
Q 004470 623 RTTAKIYKGMCAQGITPDGNTYNILLQGHCK----ARNMKEAWFLHKEMVQKGFNLTTSSYNALIKGFLKRK-------- 690 (751)
Q Consensus 623 ~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g-------- 690 (751)
..|...+.++...+ +......+...|.. ..+.++|...|.+.-+.|. ......+. .+...|
T Consensus 172 ~~A~~~~~~aa~~~---~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g~---~~a~~~~~-~~~~~g~g~~~~~~ 244 (292)
T COG0790 172 KKALYLYRKAAELG---NPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQGD---GAACYNLG-LMYLNGEGVKKAAF 244 (292)
T ss_pred HhHHHHHHHHHHhc---CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCC---HHHHHHHH-HHHhcCCCchhhhh
Confidence 45666777766655 33333444444432 2367777777777777663 33333333 444444
Q ss_pred -------CHHHHHHHHHHHHHCCCCC
Q 004470 691 -------KYLEARELFEEMRRGGLVA 709 (751)
Q Consensus 691 -------~~~~A~~~~~~~~~~~~~~ 709 (751)
+...|...+......+...
T Consensus 245 ~~~~~~~~~~~a~~~~~~~~~~~~~~ 270 (292)
T COG0790 245 LTAAKEEDKKQALEWLQKACELGFDN 270 (292)
T ss_pred cccccCCCHHHHHHHHHHHHHcCChh
Confidence 5566666666666655433
No 338
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=83.97 E-value=43 Score=32.40 Aligned_cols=184 Identities=14% Similarity=0.089 Sum_probs=106.2
Q ss_pred HcCCHHHHHHHHHHHHHCCCCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHhC---CC--CCCHHHHHHHHHHHHhc
Q 004470 513 KAGNILQAVKLMEDMEVAGFHPDT---FTYTTIMDAYCKSGEMVKAHELLRDMLDK---GL--QPSVVTFNVLMNGFCMS 584 (751)
Q Consensus 513 ~~g~~~~A~~~~~~~~~~~~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~--~p~~~~~~~li~~~~~~ 584 (751)
+..++++|+.-|.+..+....... .+...++..+.+.+++++..+.+.+++.- .+ .-+..+.|.+++.....
T Consensus 39 ~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS 118 (440)
T KOG1464|consen 39 KEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTS 118 (440)
T ss_pred cccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhh
Confidence 345788899988888765322223 34455677888889999888888887631 11 12445667777766655
Q ss_pred CChhHHHHHHHHHHHc-----CCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHC-----CC------CCCHHHHHHHH
Q 004470 585 GMIEDGEKLLKWMLEK-----GLKPNAATYNPLIKQHCLRNDMRTTAKIYKGMCAQ-----GI------TPDGNTYNILL 648 (751)
Q Consensus 585 g~~~~A~~l~~~~~~~-----g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~-----g~------~p~~~~~~~li 648 (751)
.+.+--...++.-++. +-+.--.|-..|...|...|++.+..++++++... |- ..-...|..-|
T Consensus 119 ~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEI 198 (440)
T KOG1464|consen 119 KNMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEI 198 (440)
T ss_pred hhhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHh
Confidence 6655555555443321 11111233455666777777777777777776542 10 01134566667
Q ss_pred HHHHhcCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHH-----HhcCCHHHHHH
Q 004470 649 QGHCKARNMKEAWFLHKEMVQK-GFNLTTSSYNALIKGF-----LKRKKYLEARE 697 (751)
Q Consensus 649 ~~~~~~g~~~~A~~~~~~~~~~-~~~p~~~~~~~l~~~~-----~~~g~~~~A~~ 697 (751)
..|....+-.+-..+|++.+.. .--|.+.+... ++-| .+.|++++|-.
T Consensus 199 QmYT~qKnNKkLK~lYeqalhiKSAIPHPlImGv-IRECGGKMHlreg~fe~AhT 252 (440)
T KOG1464|consen 199 QMYTEQKNNKKLKALYEQALHIKSAIPHPLIMGV-IRECGGKMHLREGEFEKAHT 252 (440)
T ss_pred hhhhhhcccHHHHHHHHHHHHhhccCCchHHHhH-HHHcCCccccccchHHHHHh
Confidence 7777777777766777766542 12234444332 2322 34566666544
No 339
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=83.83 E-value=29 Score=37.64 Aligned_cols=149 Identities=17% Similarity=0.087 Sum_probs=91.5
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 004470 478 KSGELETANELLHEMCRKGLQLNIYTYNSIVNGLCKAGNILQAVKLMEDMEVAGFHPDTFTYTTIMDAYCKSGEMVKAHE 557 (751)
Q Consensus 478 ~~g~~~~A~~l~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 557 (751)
-.|+++.|..++..+. ....+.++..+.++|-.++|+++- +|..-. .....+.|+++.|.+
T Consensus 598 mrrd~~~a~~vLp~I~-------k~~rt~va~Fle~~g~~e~AL~~s---------~D~d~r---Felal~lgrl~iA~~ 658 (794)
T KOG0276|consen 598 LRRDLEVADGVLPTIP-------KEIRTKVAHFLESQGMKEQALELS---------TDPDQR---FELALKLGRLDIAFD 658 (794)
T ss_pred hhccccccccccccCc-------hhhhhhHHhHhhhccchHhhhhcC---------CChhhh---hhhhhhcCcHHHHHH
Confidence 4566666655443332 223345566667777777776543 232221 122346788888877
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCC
Q 004470 558 LLRDMLDKGLQPSVVTFNVLMNGFCMSGMIEDGEKLLKWMLEKGLKPNAATYNPLIKQHCLRNDMRTTAKIYKGMCAQGI 637 (751)
Q Consensus 558 ~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~ 637 (751)
+..+.. +..-|..|.++....|++..|.+.|..... |..|+-.+...|+.+....+-....+.|.
T Consensus 659 la~e~~------s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~~la~~~~~~g~ 723 (794)
T KOG0276|consen 659 LAVEAN------SEVKWRQLGDAALSAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGLAVLASLAKKQGK 723 (794)
T ss_pred HHHhhc------chHHHHHHHHHHhhcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHHHHHHHHHhhcc
Confidence 665543 556688888888888888888888876553 44666666777777766666666666553
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 004470 638 TPDGNTYNILLQGHCKARNMKEAWFLHKE 666 (751)
Q Consensus 638 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 666 (751)
. |....+|...|+++++.+++.+
T Consensus 724 ~------N~AF~~~~l~g~~~~C~~lLi~ 746 (794)
T KOG0276|consen 724 N------NLAFLAYFLSGDYEECLELLIS 746 (794)
T ss_pred c------chHHHHHHHcCCHHHHHHHHHh
Confidence 2 2334456677888888777654
No 340
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=83.76 E-value=11 Score=37.14 Aligned_cols=128 Identities=16% Similarity=0.156 Sum_probs=79.3
Q ss_pred HHHHHHhcCChhHHHHHHHHHHH----------cCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCC---CCCCHHH
Q 004470 577 LMNGFCMSGMIEDGEKLLKWMLE----------KGLKPNAATYNPLIKQHCLRNDMRTTAKIYKGMCAQG---ITPDGNT 643 (751)
Q Consensus 577 li~~~~~~g~~~~A~~l~~~~~~----------~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g---~~p~~~~ 643 (751)
|..+|.....|+.-....-.+-. .|......+...++..-....+++.+...+-++...- ..|+...
T Consensus 25 LsS~fs~e~~w~~r~~~~~kla~~g~~~~kkF~~g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~ 104 (418)
T KOG4570|consen 25 LSSAFSDEHKWEAREKEHYKLADLGSLMDKKFERGLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTI 104 (418)
T ss_pred hHHHhhhhhhhhHHHHHHHHHhcccccchhhhhcCCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccH
Confidence 45556665566554433323222 2333344455555555555677888888777776421 1222222
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 004470 644 YNILLQGHCKARNMKEAWFLHKEMVQKGFNLTTSSYNALIKGFLKRKKYLEARELFEEMRRGG 706 (751)
Q Consensus 644 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 706 (751)
+ ..++.+ -.-+.++++.++..=++.|+-||..+...+++.+.+.+++.+|..+.-.|....
T Consensus 105 ~-~~irll-lky~pq~~i~~l~npIqYGiF~dqf~~c~l~D~flk~~n~~~aa~vvt~~~~qe 165 (418)
T KOG4570|consen 105 H-TWIRLL-LKYDPQKAIYTLVNPIQYGIFPDQFTFCLLMDSFLKKENYKDAASVVTEVMMQE 165 (418)
T ss_pred H-HHHHHH-HccChHHHHHHHhCcchhccccchhhHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 2 223322 334677888888888888888888888888888888888888888887777654
No 341
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=83.43 E-value=31 Score=30.31 Aligned_cols=52 Identities=10% Similarity=0.097 Sum_probs=26.8
Q ss_pred cCChhHHHHHHHHHHhCCCccCHHhHHHHHHHHHhCCCCHHHHHHHHHhchhcC
Q 004470 198 ARKLNEARKLFEKLLNYGLVISVDSCNLFLSRLSNTCDGLRMVVKSFTEFPELG 251 (751)
Q Consensus 198 ~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~l~~~~~~~~~a~~~~~~~~~~~ 251 (751)
.++++++..+++.|.-. .|+....-.+-+.+.-..|++++|+.+|++..+.+
T Consensus 23 ~~d~~D~e~lLdALrvL--rP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~ 74 (153)
T TIGR02561 23 SADPYDAQAMLDALRVL--RPNLKELDMFDGWLLIARGNYDEAARILRELLSSA 74 (153)
T ss_pred cCCHHHHHHHHHHHHHh--CCCccccchhHHHHHHHcCCHHHHHHHHHhhhccC
Confidence 55555555555555443 44444444444444444555555555555555543
No 342
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=83.36 E-value=9.6 Score=32.60 Aligned_cols=68 Identities=16% Similarity=0.239 Sum_probs=33.0
Q ss_pred CCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHHcC
Q 004470 674 LTTSSYNALIKGFLKRKK---YLEARELFEEMRRGGLVA-DREIYYFFVDINFEEGNTEITLELCDAAIECY 741 (751)
Q Consensus 674 p~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 741 (751)
++..+--.+.+++.+..+ ..+.+.+++...+...+. ..+..+.|+-++++.|++++++++++..++..
T Consensus 30 ~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e 101 (149)
T KOG3364|consen 30 VSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETE 101 (149)
T ss_pred chHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhC
Confidence 344455555555555432 334455555555422111 22333344455556666666666665555544
No 343
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=83.03 E-value=47 Score=32.15 Aligned_cols=203 Identities=17% Similarity=0.120 Sum_probs=118.1
Q ss_pred CccCHHhHHHHHHHHHhCCCCHHHHHHHHHhchhcCCCcCHH---HHHHHHHHHHhcCCHHHHHHHHHHHHhc---CC--
Q 004470 216 LVISVDSCNLFLSRLSNTCDGLRMVVKSFTEFPELGICWNTA---SYNIMIHCLCRFGKIKEAHLLLLQMELR---GC-- 287 (751)
Q Consensus 216 ~~p~~~~~~~ll~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~li~~~~~~g~~~~A~~~~~~m~~~---g~-- 287 (751)
-.||+..-|..-.+-.....+.++|+..|+++.+.....-.+ +.-.+|..+.+.|++++-.+.|.+|... .+
T Consensus 22 sEpdVDlENQYYnsK~l~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTr 101 (440)
T KOG1464|consen 22 SEPDVDLENQYYNSKGLKEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTR 101 (440)
T ss_pred CCCCcchHhhhhccccccccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhc
Confidence 356655444443333334467788888888877664433333 3344677888999999998888887531 11
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC--CCCCC---cccHHHHHHHHHhcCCHHHHHHHHHHHHHCCC----C
Q 004470 288 SPDVVSFSTIINGYCYLGELQRVLKLIEEMQIK--GLKPN---PYTYNSVVRLLCKTSKVVEAETILREMMNQGI----V 358 (751)
Q Consensus 288 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--g~~p~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~----~ 358 (751)
.-+..+-|++++.-....+.+-..++++.-... .-+.+ -.|-..|...|...|++.+-.++++++...-- .
T Consensus 102 NySEKsIN~IlDyiStS~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGe 181 (440)
T KOG1464|consen 102 NYSEKSINSILDYISTSKNMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGE 181 (440)
T ss_pred cccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCc
Confidence 123455677777666666666555555443221 00111 22345677778888888888888888765311 1
Q ss_pred C-------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-CCCCCHHHHHHHHH-----HHHhcCCHHHHHHHH
Q 004470 359 P-------DNVIYTTLIDGFCKMGNVAAAYRLFDEMRGL-NIIPDLLTYTAIIC-----GFCLTGKMVEAEKLF 419 (751)
Q Consensus 359 p-------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~~p~~~~~~~li~-----~~~~~g~~~~A~~~~ 419 (751)
. =...|..=|..|....+-.+-..+|++.... ...|.+... .+|+ ...+.|++++|-.-|
T Consensus 182 dD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPHPlIm-GvIRECGGKMHlreg~fe~AhTDF 254 (440)
T KOG1464|consen 182 DDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPHPLIM-GVIRECGGKMHLREGEFEKAHTDF 254 (440)
T ss_pred hhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCchHHH-hHHHHcCCccccccchHHHHHhHH
Confidence 1 1346667777788887777777777766542 122333332 2232 234567777775433
No 344
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=83.01 E-value=8.3 Score=35.93 Aligned_cols=76 Identities=16% Similarity=0.144 Sum_probs=56.5
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC--CCCHHHHHHHHHH
Q 004470 609 YNPLIKQHCLRNDMRTTAKIYKGMCAQGITPDGNTYNILLQGHCKARNMKEAWFLHKEMVQKGF--NLTTSSYNALIKG 685 (751)
Q Consensus 609 ~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~--~p~~~~~~~l~~~ 685 (751)
.+..+..+.+.+.+.+|+...++-++.. +.|..+-..++..||-.|+|++|..-++-.-+..+ .+....|..++.+
T Consensus 4 l~~t~seLL~~~sL~dai~~a~~qVkak-Ptda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir~ 81 (273)
T COG4455 4 LRDTISELLDDNSLQDAIGLARDQVKAK-PTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIRC 81 (273)
T ss_pred hHHHHHHHHHhccHHHHHHHHHHHHhcC-CccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHHH
Confidence 4455667788899999999999888763 33566667789999999999999988887766432 3345577777655
No 345
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=82.96 E-value=11 Score=39.37 Aligned_cols=127 Identities=11% Similarity=0.111 Sum_probs=79.4
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHHcCC
Q 004470 543 MDAYCKSGEMVKAHELLRDMLDK-GLQPSVVTFNVLMNGFCMSGMIEDGEKLLKWMLEKGLKPNAATYNPLIKQHCLRND 621 (751)
Q Consensus 543 i~~~~~~g~~~~A~~~~~~~~~~-~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~g~~p~~~~~~~l~~~~~~~g~ 621 (751)
|.--...|+.-.|-+-+...... --.|+....... .+...|+++.+...+...... +.....+..+++....+.|+
T Consensus 296 i~k~~~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~--i~~~lg~ye~~~~~~s~~~~~-~~s~~~~~~~~~r~~~~l~r 372 (831)
T PRK15180 296 ITKQLADGDIIAASQQLFAALRNQQQDPVLIQLRSV--IFSHLGYYEQAYQDISDVEKI-IGTTDSTLRCRLRSLHGLAR 372 (831)
T ss_pred HHHHhhccCHHHHHHHHHHHHHhCCCCchhhHHHHH--HHHHhhhHHHHHHHhhchhhh-hcCCchHHHHHHHhhhchhh
Confidence 33444567777766555444432 223444433333 345678888888887766543 33345667777888888888
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 004470 622 MRTTAKIYKGMCAQGITPDGNTYNILLQGHCKARNMKEAWFLHKEMVQKGFN 673 (751)
Q Consensus 622 ~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~ 673 (751)
+++|...-+.|+...++ +........-.-...|-++++.-.|++.....++
T Consensus 373 ~~~a~s~a~~~l~~eie-~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~ 423 (831)
T PRK15180 373 WREALSTAEMMLSNEIE-DEEVLTVAAGSADALQLFDKSYHYWKRVLLLNPE 423 (831)
T ss_pred HHHHHHHHHHHhccccC-ChhheeeecccHHHHhHHHHHHHHHHHHhccCCh
Confidence 88888888888776554 4444444333445567788888888888766433
No 346
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=82.88 E-value=60 Score=33.27 Aligned_cols=123 Identities=12% Similarity=0.102 Sum_probs=73.3
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh---cCCHHHHHHHH
Q 004470 623 RTTAKIYKGMCAQGITPDGNTYNILLQGHCKARNMKEAWFLHKEMVQKGFNLTTSSYNALIKGFLK---RKKYLEARELF 699 (751)
Q Consensus 623 ~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~---~g~~~~A~~~~ 699 (751)
+.-+.+++++++.+ +.+......++..+.+..+.++..+.+++++...+. +...|...++.... .-.+++...+|
T Consensus 48 E~klsilerAL~~n-p~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~~~-~~~LW~~yL~~~q~~~~~f~v~~~~~~y 125 (321)
T PF08424_consen 48 ERKLSILERALKHN-PDSERLLLGYLEEGEKVWDSEKLAKKWEELLFKNPG-SPELWREYLDFRQSNFASFTVSDVRDVY 125 (321)
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCC-ChHHHHHHHHHHHHHhccCcHHHHHHHH
Confidence 44556666666652 234555566667777777777777777777776443 66677666665543 23466666666
Q ss_pred HHHHHC------CC------CCCH-----HHHHHHHHHHHhcCChhHHHHHHHHHHHcCC-CCCCc
Q 004470 700 EEMRRG------GL------VADR-----EIYYFFVDINFEEGNTEITLELCDAAIECYL-VGKAT 747 (751)
Q Consensus 700 ~~~~~~------~~------~~~~-----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~ 747 (751)
.+.++. +. .++. .++..+...+.++|..+.|...++-++|..+ .|..+
T Consensus 126 ~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~~aG~~E~Ava~~Qa~lE~n~~~P~~~ 191 (321)
T PF08424_consen 126 EKCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLRQAGYTERAVALWQALLEFNFFRPESL 191 (321)
T ss_pred HHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHCCchHHHHHHHHHHHHHHcCCcccc
Confidence 665541 11 0111 1222333456778888888888888888775 34433
No 347
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=82.34 E-value=30 Score=30.36 Aligned_cols=52 Identities=12% Similarity=-0.097 Sum_probs=32.4
Q ss_pred CCCHHHHHHHHHhchhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 004470 234 CDGLRMVVKSFTEFPELGICWNTASYNIMIHCLCRFGKIKEAHLLLLQMELRG 286 (751)
Q Consensus 234 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 286 (751)
.++.+++..+++.+.-..|. +...-..-...+.+.|++++|+.+|++..+.+
T Consensus 23 ~~d~~D~e~lLdALrvLrP~-~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~ 74 (153)
T TIGR02561 23 SADPYDAQAMLDALRVLRPN-LKELDMFDGWLLIARGNYDEAARILRELLSSA 74 (153)
T ss_pred cCCHHHHHHHHHHHHHhCCC-ccccchhHHHHHHHcCCHHHHHHHHHhhhccC
Confidence 46777777777776655433 22222222334677888888888888887754
No 348
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=82.23 E-value=94 Score=35.09 Aligned_cols=75 Identities=17% Similarity=0.155 Sum_probs=39.2
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 004470 333 VRLLCKTSKVVEAETILREMMNQGIVP---DNVIYTTLIDGFCKMGNVAAAYRLFDEMRGLNIIPDLLTYTAIICGFCLT 409 (751)
Q Consensus 333 i~~~~~~g~~~~A~~~~~~m~~~g~~p---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~ 409 (751)
|+-+.+.+.+++|..+.+..... .| -......+|+.+.-.|++++|-...-.|... +..-|...+..+...
T Consensus 363 i~Wll~~k~yeeAl~~~k~~~~~--~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn----~~~eWe~~V~~f~e~ 436 (846)
T KOG2066|consen 363 IDWLLEKKKYEEALDAAKASIGN--EERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLGN----NAAEWELWVFKFAEL 436 (846)
T ss_pred HHHHHHhhHHHHHHHHHHhccCC--ccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhcc----hHHHHHHHHHHhccc
Confidence 34455555666665555443322 22 2234555666666666666666666666543 444555555555544
Q ss_pred CCHH
Q 004470 410 GKMV 413 (751)
Q Consensus 410 g~~~ 413 (751)
++..
T Consensus 437 ~~l~ 440 (846)
T KOG2066|consen 437 DQLT 440 (846)
T ss_pred cccc
Confidence 4433
No 349
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=82.21 E-value=92 Score=34.94 Aligned_cols=121 Identities=15% Similarity=0.131 Sum_probs=81.6
Q ss_pred HHHhcCChhHHHHHHHHHHHcCCCCCH--hhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 004470 580 GFCMSGMIEDGEKLLKWMLEKGLKPNA--ATYNPLIKQHCLRNDMRTTAKIYKGMCAQGITPDGNTYNILLQGHCKARNM 657 (751)
Q Consensus 580 ~~~~~g~~~~A~~l~~~~~~~g~~p~~--~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~ 657 (751)
++..-|+.++|..+.++|.... .|-. .-.-++..+|+..|+.....+++.-.+.. ...|+.-+..+.-++.-..+.
T Consensus 510 aL~~ygrqe~Ad~lI~el~~dk-dpilR~~Gm~t~alAy~GTgnnkair~lLh~aVsD-~nDDVrRaAVialGFVl~~dp 587 (929)
T KOG2062|consen 510 ALVVYGRQEDADPLIKELLRDK-DPILRYGGMYTLALAYVGTGNNKAIRRLLHVAVSD-VNDDVRRAAVIALGFVLFRDP 587 (929)
T ss_pred HHHHhhhhhhhHHHHHHHhcCC-chhhhhhhHHHHHHHHhccCchhhHHHhhcccccc-cchHHHHHHHHHheeeEecCh
Confidence 4456788899999999998652 2211 11235666789999988888888776653 345666676667777777888
Q ss_pred HHHHHHHHHHHHCCCCCCHH--HHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004470 658 KEAWFLHKEMVQKGFNLTTS--SYNALIKGFLKRKKYLEARELFEEMRR 704 (751)
Q Consensus 658 ~~A~~~~~~~~~~~~~p~~~--~~~~l~~~~~~~g~~~~A~~~~~~~~~ 704 (751)
+....+.+-+.+. ..|... +-..|.-+|.-.| ..+|+.+++.|..
T Consensus 588 ~~~~s~V~lLses-~N~HVRyGaA~ALGIaCAGtG-~~eAi~lLepl~~ 634 (929)
T KOG2062|consen 588 EQLPSTVSLLSES-YNPHVRYGAAMALGIACAGTG-LKEAINLLEPLTS 634 (929)
T ss_pred hhchHHHHHHhhh-cChhhhhhHHHHHhhhhcCCC-cHHHHHHHhhhhc
Confidence 8888888776654 444443 3334444444444 5789999999986
No 350
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=82.00 E-value=28 Score=31.68 Aligned_cols=76 Identities=16% Similarity=0.124 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC----C-------HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 004470 658 KEAWFLHKEMVQKGFNLTTSSYNALIKGFLKRK----K-------YLEARELFEEMRRGGLVADREIYYFFVDINFEEGN 726 (751)
Q Consensus 658 ~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g----~-------~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 726 (751)
++|+.-|++++..++. ...++..++.+|...+ + +++|...|+++.+ ..|+...|..-+...
T Consensus 52 edAisK~eeAL~I~P~-~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~--~~P~ne~Y~ksLe~~----- 123 (186)
T PF06552_consen 52 EDAISKFEEALKINPN-KHDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVD--EDPNNELYRKSLEMA----- 123 (186)
T ss_dssp HHHHHHHHHHHHH-TT--HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH--H-TT-HHHHHHHHHH-----
T ss_pred HHHHHHHHHHHhcCCc-hHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHh--cCCCcHHHHHHHHHH-----
Confidence 3444444444444333 3346666666665432 2 4555555555555 367777777544432
Q ss_pred hhHHHHHHHHHHHcCC
Q 004470 727 TEITLELCDAAIECYL 742 (751)
Q Consensus 727 ~~~A~~~~~~~~~~~~ 742 (751)
++|-++..++.+++.
T Consensus 124 -~kap~lh~e~~~~~~ 138 (186)
T PF06552_consen 124 -AKAPELHMEIHKQGL 138 (186)
T ss_dssp -HTHHHHHHHHHHSSS
T ss_pred -HhhHHHHHHHHHHHh
Confidence 456666666666653
No 351
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=80.67 E-value=1.2e+02 Score=35.36 Aligned_cols=39 Identities=21% Similarity=0.200 Sum_probs=26.4
Q ss_pred HHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 004470 545 AYCKSGEMVKAHELLRDMLDKGLQPSVVTFNVLMNGFCM 583 (751)
Q Consensus 545 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~ 583 (751)
.|.+....+-+..+++.+....-.++..-.+.++..|+.
T Consensus 600 ~~l~~~~~~l~I~YLE~li~~~~~~~~~lht~ll~ly~e 638 (877)
T KOG2063|consen 600 NYLKSKEPKLLIPYLEHLISDNRLTSTLLHTVLLKLYLE 638 (877)
T ss_pred HHhhhhCcchhHHHHHHHhHhccccchHHHHHHHHHHHH
Confidence 355666777778888877765545566667777776654
No 352
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=80.50 E-value=24 Score=33.51 Aligned_cols=84 Identities=8% Similarity=0.010 Sum_probs=58.0
Q ss_pred hcCChHHHHHHHHHHHcCCCCCchhhhHHHHHHHHHhhhcCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCccCH
Q 004470 141 AAKDLKTAHGLIHDFWAKPNLDASIAFTHFVERLIYTYKDWGSDPHVFDIFFQVLVEARKLNEARKLFEKLLNYGLVISV 220 (751)
Q Consensus 141 ~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~ 220 (751)
..++|+.|...+.+++..+ |..+.-|.-=+-++.+...++.+..--.++++. .|+.
T Consensus 22 ~~k~y~~ai~~y~raI~~n----------------------P~~~~Y~tnralchlk~~~~~~v~~dcrralql--~~N~ 77 (284)
T KOG4642|consen 22 IPKRYDDAIDCYSRAICIN----------------------PTVASYYTNRALCHLKLKHWEPVEEDCRRALQL--DPNL 77 (284)
T ss_pred chhhhchHHHHHHHHHhcC----------------------CCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhc--ChHH
Confidence 3566777777777776654 333444555666777777777777777777665 6777
Q ss_pred HhHHHHHHHHHhCCCCHHHHHHHHHhch
Q 004470 221 DSCNLFLSRLSNTCDGLRMVVKSFTEFP 248 (751)
Q Consensus 221 ~~~~~ll~~l~~~~~~~~~a~~~~~~~~ 248 (751)
.-...+++........+++|+.++.++.
T Consensus 78 vk~h~flg~~~l~s~~~~eaI~~Lqra~ 105 (284)
T KOG4642|consen 78 VKAHYFLGQWLLQSKGYDEAIKVLQRAY 105 (284)
T ss_pred HHHHHHHHHHHHhhccccHHHHHHHHHH
Confidence 7777777776666777888888877773
No 353
>PRK09687 putative lyase; Provisional
Probab=80.22 E-value=67 Score=32.11 Aligned_cols=232 Identities=13% Similarity=0.064 Sum_probs=106.6
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCH----HHHHHHHHHHHHCCCCCCHHHH
Q 004470 289 PDVVSFSTIINGYCYLGELQRVLKLIEEMQIKGLKPNPYTYNSVVRLLCKTSKV----VEAETILREMMNQGIVPDNVIY 364 (751)
Q Consensus 289 p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~----~~A~~~~~~m~~~g~~p~~~~~ 364 (751)
+|.......+..+...|. +++...+..+... +|...-...+.++...|+. +++...+..+... .++..+-
T Consensus 35 ~d~~vR~~A~~aL~~~~~-~~~~~~l~~ll~~---~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~--D~d~~VR 108 (280)
T PRK09687 35 HNSLKRISSIRVLQLRGG-QDVFRLAIELCSS---KNPIERDIGADILSQLGMAKRCQDNVFNILNNLALE--DKSACVR 108 (280)
T ss_pred CCHHHHHHHHHHHHhcCc-chHHHHHHHHHhC---CCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhc--CCCHHHH
Confidence 455555555555655554 2333333333322 2445555555566665542 4566666655333 3455555
Q ss_pred HHHHHHHHHcCC-----HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 004470 365 TTLIDGFCKMGN-----VAAAYRLFDEMRGLNIIPDLLTYTAIICGFCLTGKMVEAEKLFHEMLGRGLEPDEIVYTALID 439 (751)
Q Consensus 365 ~~li~~~~~~g~-----~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~ 439 (751)
...+.++...+. ...+...+..... .++..+-...+.++.+.|+ ++|+..+-.+++. +|..+-...+.
T Consensus 109 ~~A~~aLG~~~~~~~~~~~~a~~~l~~~~~---D~~~~VR~~a~~aLg~~~~-~~ai~~L~~~L~d---~~~~VR~~A~~ 181 (280)
T PRK09687 109 ASAINATGHRCKKNPLYSPKIVEQSQITAF---DKSTNVRFAVAFALSVIND-EAAIPLLINLLKD---PNGDVRNWAAF 181 (280)
T ss_pred HHHHHHHhcccccccccchHHHHHHHHHhh---CCCHHHHHHHHHHHhccCC-HHHHHHHHHHhcC---CCHHHHHHHHH
Confidence 555555544332 1223333333222 1344455555566666555 4455555555542 23333333333
Q ss_pred HHHHcC-ChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHH
Q 004470 440 GYCKAG-GMKKAFSLHNNMVHMRLTPNVVTYTALADGLCKSGELETANELLHEMCRKGLQLNIYTYNSIVNGLCKAGNIL 518 (751)
Q Consensus 440 ~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~~~~li~~~~~~g~~~ 518 (751)
++.+.+ ....+...+..+.. .++..+-...+.++.+.|+ ..|...+-...+.+ + .....+.++...|..
T Consensus 182 aLg~~~~~~~~~~~~L~~~L~---D~~~~VR~~A~~aLg~~~~-~~av~~Li~~L~~~---~--~~~~a~~ALg~ig~~- 251 (280)
T PRK09687 182 ALNSNKYDNPDIREAFVAMLQ---DKNEEIRIEAIIGLALRKD-KRVLSVLIKELKKG---T--VGDLIIEAAGELGDK- 251 (280)
T ss_pred HHhcCCCCCHHHHHHHHHHhc---CCChHHHHHHHHHHHccCC-hhHHHHHHHHHcCC---c--hHHHHHHHHHhcCCH-
Confidence 333322 12344444444443 2355555555666666665 33444444444332 1 122344555555553
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 004470 519 QAVKLMEDMEVAGFHPDTFTYTTIMDA 545 (751)
Q Consensus 519 ~A~~~~~~~~~~~~~~~~~~~~~li~~ 545 (751)
+|+..+..+... .||..+-...+.+
T Consensus 252 ~a~p~L~~l~~~--~~d~~v~~~a~~a 276 (280)
T PRK09687 252 TLLPVLDTLLYK--FDDNEIITKAIDK 276 (280)
T ss_pred hHHHHHHHHHhh--CCChhHHHHHHHH
Confidence 455555555543 2344444433333
No 354
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=80.00 E-value=65 Score=31.78 Aligned_cols=60 Identities=10% Similarity=-0.011 Sum_probs=38.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 004470 678 SYNALIKGFLKRKKYLEARELFEEMRRGGLVADREIYYFFVDINFEEGNTEITLELCDAAI 738 (751)
Q Consensus 678 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 738 (751)
+++.....|..+|.+.+|.++.++.+..+ +.+...+..+...|...|+--.|.+.++++.
T Consensus 281 llgkva~~yle~g~~neAi~l~qr~ltld-pL~e~~nk~lm~~la~~gD~is~~khyerya 340 (361)
T COG3947 281 LLGKVARAYLEAGKPNEAIQLHQRALTLD-PLSEQDNKGLMASLATLGDEISAIKHYERYA 340 (361)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhhcC-hhhhHHHHHHHHHHHHhccchhhhhHHHHHH
Confidence 33445566667777777777777776654 4566666677777777777666666666553
No 355
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=79.57 E-value=71 Score=32.00 Aligned_cols=97 Identities=15% Similarity=0.140 Sum_probs=46.4
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHH----CCCCCCHHHHHHHH-HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 004470 608 TYNPLIKQHCLRNDMRTTAKIYKGMCA----QGITPDGNTYNILL-QGHCKARNMKEAWFLHKEMVQKGFNLTTSSYNAL 682 (751)
Q Consensus 608 ~~~~l~~~~~~~g~~~~A~~~~~~m~~----~g~~p~~~~~~~li-~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l 682 (751)
.+.....-||+.||.+.|.+.+.+..+ .|..-|+..+.+-+ -.|....-..+-++-.+.+.+.|-.-+..--...
T Consensus 106 a~~~kaeYycqigDkena~~~~~~t~~ktvs~g~kiDVvf~~iRlglfy~D~~lV~~~iekak~liE~GgDWeRrNRlKv 185 (393)
T KOG0687|consen 106 AMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKIDVVFYKIRLGLFYLDHDLVTESIEKAKSLIEEGGDWERRNRLKV 185 (393)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCChhhhhhHHH
Confidence 344455567777777777766654433 45555554433322 2233333344455555555556554333221111
Q ss_pred HHH--HHhcCCHHHHHHHHHHHHH
Q 004470 683 IKG--FLKRKKYLEARELFEEMRR 704 (751)
Q Consensus 683 ~~~--~~~~g~~~~A~~~~~~~~~ 704 (751)
-.+ +....++++|-.+|-..+.
T Consensus 186 Y~Gly~msvR~Fk~Aa~Lfld~vs 209 (393)
T KOG0687|consen 186 YQGLYCMSVRNFKEAADLFLDSVS 209 (393)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHcc
Confidence 111 1234566666666655443
No 356
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=79.20 E-value=97 Score=33.69 Aligned_cols=115 Identities=11% Similarity=0.033 Sum_probs=68.8
Q ss_pred CCCChhHHHHHHHHHHhcCChHHHHHHHHHHHcCCCCCchhhhHHHHHHHHHhh-hcC------CCChhhHHHH---HHH
Q 004470 125 REPILEARCIVVQISVAAKDLKTAHGLIHDFWAKPNLDASIAFTHFVERLIYTY-KDW------GSDPHVFDIF---FQV 194 (751)
Q Consensus 125 ~~~~~~~~~~~~~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~------~~~~~~~~~l---~~~ 194 (751)
.|.|+.+...++++...+|+.+.|..++++.+-. +..++...+.-+ ..| +.|-..|..| ++-
T Consensus 280 sPYHvdsLLqva~~~r~qgD~e~aadLieR~Ly~--------~d~a~hp~F~~~sg~cRL~y~~~eNR~FyL~l~r~m~~ 351 (665)
T KOG2422|consen 280 SPYHVDSLLQVADIFRFQGDREMAADLIERGLYV--------FDRALHPNFIPFSGNCRLPYIYPENRQFYLALFRYMQS 351 (665)
T ss_pred CCcchhHHHHHHHHHHHhcchhhHHHHHHHHHHH--------HHHHhccccccccccccCcccchhhHHHHHHHHHHHHH
Confidence 4668999999999999999999999999987631 111111111000 011 1122222222 344
Q ss_pred HHhcCChhHHHHHHHHHHhCCCccCHHhHHHHHHHHHhCCCCHHHHHHHHHhc
Q 004470 195 LVEARKLNEARKLFEKLLNYGLVISVDSCNLFLSRLSNTCDGLRMVVKSFTEF 247 (751)
Q Consensus 195 ~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~l~~~~~~~~~a~~~~~~~ 247 (751)
+.+.|-+.-|.++..-+.+..+.-|...+..++..+.....++.--++++++.
T Consensus 352 l~~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~ALrareYqwiI~~~~~~ 404 (665)
T KOG2422|consen 352 LAQRGCWRTALEWCKLLLSLDPSEDPLGILYLIDIYALRAREYQWIIELSNEP 404 (665)
T ss_pred HHhcCChHHHHHHHHHHhhcCCcCCchhHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 45677888888877777776544456666666666665556666555555544
No 357
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=78.96 E-value=73 Score=33.81 Aligned_cols=40 Identities=10% Similarity=0.071 Sum_probs=26.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 004470 682 LIKGFLKRKKYLEARELFEEMRRGGLVADREIYYFFVDINF 722 (751)
Q Consensus 682 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 722 (751)
.+-.|...|+...|.+.|.+.... +..++..|..++.++.
T Consensus 341 cG~~~Lh~grPl~AfqCf~~av~v-fh~nPrlWLRlAEcCi 380 (696)
T KOG2471|consen 341 CGLLYLHSGRPLLAFQCFQKAVHV-FHRNPRLWLRLAECCI 380 (696)
T ss_pred hhHHHHhcCCcHHHHHHHHHHHHH-HhcCcHHHHHHHHHHH
Confidence 344566777777777777777663 3556677777776654
No 358
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=78.95 E-value=3.5 Score=27.59 Aligned_cols=26 Identities=27% Similarity=0.158 Sum_probs=18.7
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHcC
Q 004470 716 FFVDINFEEGNTEITLELCDAAIECY 741 (751)
Q Consensus 716 ~l~~~~~~~g~~~~A~~~~~~~~~~~ 741 (751)
.++.+|.+.|+.+.|+++++++++.+
T Consensus 4 dLA~ayie~Gd~e~Ar~lL~evl~~~ 29 (44)
T TIGR03504 4 DLARAYIEMGDLEGARELLEEVIEEG 29 (44)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHcC
Confidence 46677777777777777777777543
No 359
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=78.80 E-value=10 Score=37.73 Aligned_cols=90 Identities=12% Similarity=-0.007 Sum_probs=64.4
Q ss_pred HHHHhcCChhHHHHHHHHHHHcCCCC-CHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 004470 579 NGFCMSGMIEDGEKLLKWMLEKGLKP-NAATYNPLIKQHCLRNDMRTTAKIYKGMCAQGITPDGNTYNILLQGHCKARNM 657 (751)
Q Consensus 579 ~~~~~~g~~~~A~~l~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~ 657 (751)
+-|.++|.+++|++.+...... .| +.+++..-..+|.+..++..|..--..++..+ ..-...|..-+.+-...|+.
T Consensus 105 N~yFKQgKy~EAIDCYs~~ia~--~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd-~~Y~KAYSRR~~AR~~Lg~~ 181 (536)
T KOG4648|consen 105 NTYFKQGKYEEAIDCYSTAIAV--YPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALD-KLYVKAYSRRMQARESLGNN 181 (536)
T ss_pred hhhhhccchhHHHHHhhhhhcc--CCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhh-HHHHHHHHHHHHHHHHHhhH
Confidence 5688999999999999887764 55 88888888889999999998887777766532 11123344444444556677
Q ss_pred HHHHHHHHHHHHCC
Q 004470 658 KEAWFLHKEMVQKG 671 (751)
Q Consensus 658 ~~A~~~~~~~~~~~ 671 (751)
.+|.+-++..++..
T Consensus 182 ~EAKkD~E~vL~LE 195 (536)
T KOG4648|consen 182 MEAKKDCETVLALE 195 (536)
T ss_pred HHHHHhHHHHHhhC
Confidence 77777777776653
No 360
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=78.10 E-value=53 Score=32.21 Aligned_cols=24 Identities=8% Similarity=0.120 Sum_probs=11.4
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHH
Q 004470 608 TYNPLIKQHCLRNDMRTTAKIYKG 631 (751)
Q Consensus 608 ~~~~l~~~~~~~g~~~~A~~~~~~ 631 (751)
.+..+...||..++.+.+.++..+
T Consensus 117 a~~n~aeyY~qi~D~~ng~~~~~~ 140 (412)
T COG5187 117 ADRNIAEYYCQIMDIQNGFEWMRR 140 (412)
T ss_pred HHHHHHHHHHHHhhhhhHHHHHHH
Confidence 344444445555555555444433
No 361
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=77.66 E-value=3.1 Score=24.06 Aligned_cols=21 Identities=10% Similarity=0.140 Sum_probs=12.1
Q ss_pred HHHHHHHHhcCChhHHHHHHH
Q 004470 715 YFFVDINFEEGNTEITLELCD 735 (751)
Q Consensus 715 ~~l~~~~~~~g~~~~A~~~~~ 735 (751)
..++..+...|+.++|..+++
T Consensus 5 ~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 5 LALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHcCCHHHHHHHHh
Confidence 345556666666666665554
No 362
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=77.35 E-value=17 Score=29.01 Aligned_cols=40 Identities=8% Similarity=0.154 Sum_probs=19.5
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 004470 664 HKEMVQKGFNLTTSSYNALIKGFLKRKKYLEARELFEEMR 703 (751)
Q Consensus 664 ~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 703 (751)
++.+...++.|++.+..+-+.+|.+.+++.-|.++++...
T Consensus 30 mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK 69 (103)
T cd00923 30 LNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIK 69 (103)
T ss_pred HHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 3334444444555555555555555555555555555444
No 363
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=76.27 E-value=73 Score=30.37 Aligned_cols=23 Identities=4% Similarity=0.197 Sum_probs=14.1
Q ss_pred HHHcCCHHHHHHHHHHHHhCCCC
Q 004470 371 FCKMGNVAAAYRLFDEMRGLNII 393 (751)
Q Consensus 371 ~~~~g~~~~A~~~~~~m~~~~~~ 393 (751)
-...+++.+|+++|+++......
T Consensus 164 aa~leqY~~Ai~iyeqva~~s~~ 186 (288)
T KOG1586|consen 164 AAQLEQYSKAIDIYEQVARSSLD 186 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcc
Confidence 34556677777777776654443
No 364
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=75.94 E-value=23 Score=28.36 Aligned_cols=47 Identities=9% Similarity=0.134 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 004470 624 TTAKIYKGMCAQGITPDGNTYNILLQGHCKARNMKEAWFLHKEMVQK 670 (751)
Q Consensus 624 ~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 670 (751)
++.+-+..+...++.|++......+++|.+.+++.-|+++++-...+
T Consensus 25 e~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K 71 (103)
T cd00923 25 ELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDK 71 (103)
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 34445555555666677777777777777777777777777766544
No 365
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=75.71 E-value=19 Score=35.97 Aligned_cols=95 Identities=14% Similarity=0.078 Sum_probs=50.9
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHCCC-CC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 004470 608 TYNPLIKQHCLRNDMRTTAKIYKGMCAQGI-TP--DGNTYNILLQGHCKARNMKEAWFLHKEMVQKGFNLTTSSYNALIK 684 (751)
Q Consensus 608 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~-~p--~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~ 684 (751)
.|.-=..-|.+..++..|...|.+-++... .| +.+.|+.-..+-...|++..|+.=...++...+. ....|..=..
T Consensus 83 n~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~-h~Ka~~R~Ak 161 (390)
T KOG0551|consen 83 NYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPT-HLKAYIRGAK 161 (390)
T ss_pred HHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcc-hhhhhhhhhH
Confidence 344444556666666666666666555322 12 2444555555555566666666666655554433 2334444445
Q ss_pred HHHhcCCHHHHHHHHHHHH
Q 004470 685 GFLKRKKYLEARELFEEMR 703 (751)
Q Consensus 685 ~~~~~g~~~~A~~~~~~~~ 703 (751)
++....++++|..+.++..
T Consensus 162 c~~eLe~~~~a~nw~ee~~ 180 (390)
T KOG0551|consen 162 CLLELERFAEAVNWCEEGL 180 (390)
T ss_pred HHHHHHHHHHHHHHHhhhh
Confidence 5555566666666555543
No 366
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=75.28 E-value=4.5 Score=43.14 Aligned_cols=100 Identities=10% Similarity=-0.105 Sum_probs=51.9
Q ss_pred HHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 004470 617 CLRNDMRTTAKIYKGMCAQGITPDGNTYNILLQGHCKARNMKEAWFLHKEMVQKGFNLTTSSYNALIKGFLKRKKYLEAR 696 (751)
Q Consensus 617 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~ 696 (751)
...|+...|...+..+......-..+..-.|...+.+.|..-+|-.++.+.+.... ..+.++..+++++....+.+.|+
T Consensus 618 r~~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~-sepl~~~~~g~~~l~l~~i~~a~ 696 (886)
T KOG4507|consen 618 RAVGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAINS-SEPLTFLSLGNAYLALKNISGAL 696 (886)
T ss_pred eecCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhcc-cCchHHHhcchhHHHHhhhHHHH
Confidence 44566666666655554321111222333445555555555666666666555442 24555556666666666666666
Q ss_pred HHHHHHHHCCCCCCHHHHHHHH
Q 004470 697 ELFEEMRRGGLVADREIYYFFV 718 (751)
Q Consensus 697 ~~~~~~~~~~~~~~~~~~~~l~ 718 (751)
+.|+.+.+.. +.+.+.-+.|.
T Consensus 697 ~~~~~a~~~~-~~~~~~~~~l~ 717 (886)
T KOG4507|consen 697 EAFRQALKLT-TKCPECENSLK 717 (886)
T ss_pred HHHHHHHhcC-CCChhhHHHHH
Confidence 6666666543 33444444333
No 367
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=75.19 E-value=20 Score=33.56 Aligned_cols=52 Identities=13% Similarity=0.093 Sum_probs=24.3
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 004470 368 IDGFCKMGNVAAAYRLFDEMRGLNIIPDLLTYTAIICGFCLTGKMVEAEKLFH 420 (751)
Q Consensus 368 i~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 420 (751)
++.+.+.+++++|+...++-.+.++. |..+-..++..+|-.|++++|..-++
T Consensus 8 ~seLL~~~sL~dai~~a~~qVkakPt-da~~RhflfqLlcvaGdw~kAl~Ql~ 59 (273)
T COG4455 8 ISELLDDNSLQDAIGLARDQVKAKPT-DAGGRHFLFQLLCVAGDWEKALAQLN 59 (273)
T ss_pred HHHHHHhccHHHHHHHHHHHHhcCCc-cccchhHHHHHHhhcchHHHHHHHHH
Confidence 33444445555555554444443322 34444445555555555555544443
No 368
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=74.81 E-value=1.3 Score=39.08 Aligned_cols=83 Identities=14% Similarity=0.162 Sum_probs=42.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCC
Q 004470 262 MIHCLCRFGKIKEAHLLLLQMELRGCSPDVVSFSTIINGYCYLGELQRVLKLIEEMQIKGLKPNPYTYNSVVRLLCKTSK 341 (751)
Q Consensus 262 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~ 341 (751)
++..+.+.+..+....+++.+...+...+....+.++..|++.++.++..++++. .+.+....+++.|.+.|.
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~-------~~~yd~~~~~~~c~~~~l 85 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKT-------SNNYDLDKALRLCEKHGL 85 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTS-------SSSS-CTHHHHHHHTTTS
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHccc-------ccccCHHHHHHHHHhcch
Confidence 3444555566666666666666544444555666666666666655555555551 112223344445555555
Q ss_pred HHHHHHHHHH
Q 004470 342 VVEAETILRE 351 (751)
Q Consensus 342 ~~~A~~~~~~ 351 (751)
+++|.-++.+
T Consensus 86 ~~~a~~Ly~~ 95 (143)
T PF00637_consen 86 YEEAVYLYSK 95 (143)
T ss_dssp HHHHHHHHHC
T ss_pred HHHHHHHHHH
Confidence 5554444443
No 369
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=74.21 E-value=94 Score=30.67 Aligned_cols=36 Identities=19% Similarity=0.127 Sum_probs=23.1
Q ss_pred CCCCCCHHHHH-HHHHHHHhcCChhHHHHHHHHHHHc
Q 004470 705 GGLVADREIYY-FFVDINFEEGNTEITLELCDAAIEC 740 (751)
Q Consensus 705 ~~~~~~~~~~~-~l~~~~~~~g~~~~A~~~~~~~~~~ 740 (751)
.|.+.+...|. ..+-.|.-.|+...|...++...++
T Consensus 134 ~~~~~e~dlfi~RaVL~yL~l~n~~~A~~~~~~f~~~ 170 (260)
T PF04190_consen 134 KGYPSEADLFIARAVLQYLCLGNLRDANELFDTFTSK 170 (260)
T ss_dssp HTSS--HHHHHHHHHHHHHHTTBHHHHHHHHHHHHHH
T ss_pred hcCCcchhHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 34444444443 3334677889999999988888776
No 370
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=73.94 E-value=96 Score=30.65 Aligned_cols=70 Identities=16% Similarity=0.134 Sum_probs=49.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----CCCCCCHHHH
Q 004470 644 YNILLQGHCKARNMKEAWFLHKEMVQKGFNLTTSSYNALIKGFLKRKKYLEARELFEEMRR-----GGLVADREIY 714 (751)
Q Consensus 644 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~~~ 714 (751)
++.....|..+|.+.+|.++.++.+..++- +...+-.++..|...|+--.|.+.++++.+ .|+..|..++
T Consensus 282 lgkva~~yle~g~~neAi~l~qr~ltldpL-~e~~nk~lm~~la~~gD~is~~khyerya~vleaelgi~vddsie 356 (361)
T COG3947 282 LGKVARAYLEAGKPNEAIQLHQRALTLDPL-SEQDNKGLMASLATLGDEISAIKHYERYAEVLEAELGIDVDDSIE 356 (361)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHhhcChh-hhHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHhCCCcchhHH
Confidence 345556777888888888888888776533 667777788888888887777777777653 4555555443
No 371
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=72.62 E-value=63 Score=30.92 Aligned_cols=81 Identities=12% Similarity=0.073 Sum_probs=38.2
Q ss_pred cCChhHHHHHHHHHHHcCCCCCHhh-HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCCHHHHH
Q 004470 584 SGMIEDGEKLLKWMLEKGLKPNAAT-YNPLIKQHCLRNDMRTTAKIYKGMCAQGITPDGN-TYNILLQGHCKARNMKEAW 661 (751)
Q Consensus 584 ~g~~~~A~~l~~~~~~~g~~p~~~~-~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-~~~~li~~~~~~g~~~~A~ 661 (751)
..+++.|+..+.+.+. +.|...+ |..-+.++.+..+++.+.+--.+.++ +.||.. ....+..+......+++|+
T Consensus 23 ~k~y~~ai~~y~raI~--~nP~~~~Y~tnralchlk~~~~~~v~~dcrralq--l~~N~vk~h~flg~~~l~s~~~~eaI 98 (284)
T KOG4642|consen 23 PKRYDDAIDCYSRAIC--INPTVASYYTNRALCHLKLKHWEPVEEDCRRALQ--LDPNLVKAHYFLGQWLLQSKGYDEAI 98 (284)
T ss_pred hhhhchHHHHHHHHHh--cCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHh--cChHHHHHHHHHHHHHHhhccccHHH
Confidence 3455555555544443 2444433 23334444455555555554444444 234422 2333444445555556666
Q ss_pred HHHHHHH
Q 004470 662 FLHKEMV 668 (751)
Q Consensus 662 ~~~~~~~ 668 (751)
..+.++.
T Consensus 99 ~~Lqra~ 105 (284)
T KOG4642|consen 99 KVLQRAY 105 (284)
T ss_pred HHHHHHH
Confidence 5555553
No 372
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=72.30 E-value=6.5 Score=22.98 Aligned_cols=29 Identities=17% Similarity=0.216 Sum_probs=24.1
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 004470 186 HVFDIFFQVLVEARKLNEARKLFEKLLNY 214 (751)
Q Consensus 186 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 214 (751)
.++..++..+...|++++|...|.+.++.
T Consensus 2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~~ 30 (34)
T smart00028 2 EALYNLGNAYLKLGDYDEALEYYEKALEL 30 (34)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHHcc
Confidence 35677888899999999999999888765
No 373
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=72.15 E-value=52 Score=26.75 Aligned_cols=46 Identities=9% Similarity=0.127 Sum_probs=23.6
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 004470 625 TAKIYKGMCAQGITPDGNTYNILLQGHCKARNMKEAWFLHKEMVQK 670 (751)
Q Consensus 625 A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 670 (751)
..+-+..+...++.|++......+.+|.+.+++.-|+++++-...+
T Consensus 29 ~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K 74 (108)
T PF02284_consen 29 LRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDK 74 (108)
T ss_dssp HHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 3344444444555566666666666666666666666666655544
No 374
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=71.44 E-value=17 Score=39.04 Aligned_cols=104 Identities=12% Similarity=-0.065 Sum_probs=69.6
Q ss_pred HhcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 004470 582 CMSGMIEDGEKLLKWMLEKGLKPNAATYNPLIKQHCLRNDMRTTAKIYKGMCAQGITPDGNTYNILLQGHCKARNMKEAW 661 (751)
Q Consensus 582 ~~~g~~~~A~~l~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~ 661 (751)
...|+...|.+.+.........-..+....|...+.+.|-...|..++.+.+... ...+.++..+.+++....+++.|+
T Consensus 618 r~~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~-~sepl~~~~~g~~~l~l~~i~~a~ 696 (886)
T KOG4507|consen 618 RAVGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAIN-SSEPLTFLSLGNAYLALKNISGAL 696 (886)
T ss_pred eecCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhc-ccCchHHHhcchhHHHHhhhHHHH
Confidence 3467788888877776654332233445556666667777777888777777643 335566667778888888888888
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHH
Q 004470 662 FLHKEMVQKGFNLTTSSYNALIKGFL 687 (751)
Q Consensus 662 ~~~~~~~~~~~~p~~~~~~~l~~~~~ 687 (751)
+.|+++.++... +++.-+.|...-|
T Consensus 697 ~~~~~a~~~~~~-~~~~~~~l~~i~c 721 (886)
T KOG4507|consen 697 EAFRQALKLTTK-CPECENSLKLIRC 721 (886)
T ss_pred HHHHHHHhcCCC-ChhhHHHHHHHHH
Confidence 888888877554 6666666655555
No 375
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=70.99 E-value=21 Score=28.94 Aligned_cols=59 Identities=12% Similarity=0.150 Sum_probs=42.2
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 004470 659 EAWFLHKEMVQKGFNLTTSSYNALIKGFLKRKKYLEARELFEEMRRGGLVADREIYYFFV 718 (751)
Q Consensus 659 ~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 718 (751)
+..+-++.+...++.|++.+....+.+|.+.+++.-|.++++....+- .+....|..++
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~-~~~~~~Y~~~l 86 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKC-GNKKEIYPYIL 86 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHT-TT-TTHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHc-cChHHHHHHHH
Confidence 455666777777899999999999999999999999999999987752 33333666554
No 376
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=70.63 E-value=4.8 Score=40.17 Aligned_cols=120 Identities=10% Similarity=-0.034 Sum_probs=54.3
Q ss_pred HcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 004470 618 LRNDMRTTAKIYKGMCAQGITPDGNTYNILLQGHCKARNMKEAWFLHKEMVQKGFNLTTSSYNALIKGFLKRKKYLEARE 697 (751)
Q Consensus 618 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~ 697 (751)
..|.++.|++.|...+... ++....|..-..++.+.++...|++=++.+++.+.. +..-|-.-..+-...|++++|..
T Consensus 126 n~G~~~~ai~~~t~ai~ln-p~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~D-sa~~ykfrg~A~rllg~~e~aa~ 203 (377)
T KOG1308|consen 126 NDGEFDTAIELFTSAIELN-PPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPD-SAKGYKFRGYAERLLGNWEEAAH 203 (377)
T ss_pred cCcchhhhhcccccccccC-CchhhhcccccceeeeccCCchhhhhhhhhhccCcc-cccccchhhHHHHHhhchHHHHH
Confidence 3445555555555555532 233444444445555555555555555555544322 12222222222333456666666
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcC
Q 004470 698 LFEEMRRGGLVADREIYYFFVDINFEEGNTEITLELCDAAIECY 741 (751)
Q Consensus 698 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 741 (751)
.+....+.++.+.... .+-...-..+..++-...+++..+..
T Consensus 204 dl~~a~kld~dE~~~a--~lKeV~p~a~ki~e~~~k~er~~~e~ 245 (377)
T KOG1308|consen 204 DLALACKLDYDEANSA--TLKEVFPNAGKIEEHRRKYERAREER 245 (377)
T ss_pred HHHHHHhccccHHHHH--HHHHhccchhhhhhchhHHHHHHHHh
Confidence 6666555544333222 22233333444444444444444433
No 377
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=70.07 E-value=19 Score=25.34 Aligned_cols=41 Identities=10% Similarity=0.045 Sum_probs=31.9
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhCCCccCHHhHHHHHHHH
Q 004470 188 FDIFFQVLVEARKLNEARKLFEKLLNYGLVISVDSCNLFLSRL 230 (751)
Q Consensus 188 ~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~l 230 (751)
...|+-++.+.|++++|....+.+++. .|++..+..+...+
T Consensus 4 lY~lAig~ykl~~Y~~A~~~~~~lL~~--eP~N~Qa~~L~~~i 44 (53)
T PF14853_consen 4 LYYLAIGHYKLGEYEKARRYCDALLEI--EPDNRQAQSLKELI 44 (53)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHH--TTS-HHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhh--CCCcHHHHHHHHHH
Confidence 356788999999999999999999987 89887766655544
No 378
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=69.98 E-value=1.9e+02 Score=32.43 Aligned_cols=27 Identities=33% Similarity=0.554 Sum_probs=19.7
Q ss_pred ChhhHHHHHHHHHhcCChhHHHHHHHHH
Q 004470 184 DPHVFDIFFQVLVEARKLNEARKLFEKL 211 (751)
Q Consensus 184 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 211 (751)
+|.-|+ .+..+.-.|++++|.+++...
T Consensus 148 ~p~FW~-~v~~lvlrG~~~~a~~lL~~~ 174 (566)
T PF07575_consen 148 DPDFWD-YVQRLVLRGLFDQARQLLRLH 174 (566)
T ss_dssp SHHHHH-HHHHHHHTT-HHHHHHHH-TT
T ss_pred chhHHH-HHHHHHHcCCHHHHHHHHHhc
Confidence 367777 677788889999999998543
No 379
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=68.66 E-value=2.4e+02 Score=33.07 Aligned_cols=26 Identities=23% Similarity=0.207 Sum_probs=19.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHh
Q 004470 259 YNIMIHCLCRFGKIKEAHLLLLQMEL 284 (751)
Q Consensus 259 ~~~li~~~~~~g~~~~A~~~~~~m~~ 284 (751)
|..|+..|...|+.++|+++|.+..+
T Consensus 507 y~~Li~LY~~kg~h~~AL~ll~~l~d 532 (877)
T KOG2063|consen 507 YRELIELYATKGMHEKALQLLRDLVD 532 (877)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHhc
Confidence 56677777777777777777777665
No 380
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=68.55 E-value=29 Score=27.87 Aligned_cols=21 Identities=24% Similarity=0.317 Sum_probs=10.1
Q ss_pred HHHHhcCChhHHHHHHHHHHH
Q 004470 719 DINFEEGNTEITLELCDAAIE 739 (751)
Q Consensus 719 ~~~~~~g~~~~A~~~~~~~~~ 739 (751)
..+...|++++|.+.++++++
T Consensus 49 ~~~~~~G~~~~A~~~l~eAi~ 69 (94)
T PF12862_consen 49 ELHRRFGHYEEALQALEEAIR 69 (94)
T ss_pred HHHHHhCCHHHHHHHHHHHHH
Confidence 334444555555555555444
No 381
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=68.49 E-value=2e+02 Score=32.24 Aligned_cols=35 Identities=17% Similarity=0.134 Sum_probs=14.9
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChh
Q 004470 409 TGKMVEAEKLFHEMLGRGLEPDEIVYTALIDGYCKAGGMK 448 (751)
Q Consensus 409 ~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~ 448 (751)
.|++..+++....+. .|..+-..+.+.+...|-.+
T Consensus 310 ~~d~~~vL~~~~~~~-----~~~w~aahladLl~~~g~L~ 344 (566)
T PF07575_consen 310 EGDIESVLKEISSLF-----DDWWFAAHLADLLEHKGLLE 344 (566)
T ss_dssp TS--GGGHHHHHHH-------HHHHHHHHHHHHHHTTSS-
T ss_pred ccCHHHHHHHHHHHc-----cchhHHHHHHHHHHhcCccc
Confidence 566666666655442 13333344444444445444
No 382
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=67.99 E-value=60 Score=31.84 Aligned_cols=87 Identities=14% Similarity=0.069 Sum_probs=56.7
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 004470 611 PLIKQHCLRNDMRTTAKIYKGMCAQ--GITPDGNTYNILLQGHCKARNMKEAWFLHKEMVQKGFNLTTSSYNALIKGFLK 688 (751)
Q Consensus 611 ~l~~~~~~~g~~~~A~~~~~~m~~~--g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 688 (751)
.=|.+++..+++.++....-+--+. .++ +.....-|-.|.+.|....+.++-...+...-.-+...|.+++..|..
T Consensus 88 vGIQALAEmnrWreVLsWvlqyYq~pEklP--pkIleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl 165 (309)
T PF07163_consen 88 VGIQALAEMNRWREVLSWVLQYYQVPEKLP--PKILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLL 165 (309)
T ss_pred hhHHHHHHHhhHHHHHHHHHHHhcCcccCC--HHHHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHH
Confidence 3467788888888887765554431 233 344444566678888888888888777764222233457776666654
Q ss_pred -----cCCHHHHHHHH
Q 004470 689 -----RKKYLEARELF 699 (751)
Q Consensus 689 -----~g~~~~A~~~~ 699 (751)
.|.++||+++.
T Consensus 166 ~VLlPLG~~~eAeelv 181 (309)
T PF07163_consen 166 HVLLPLGHFSEAEELV 181 (309)
T ss_pred HHHhccccHHHHHHHH
Confidence 58888888877
No 383
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=67.72 E-value=10 Score=21.97 Aligned_cols=26 Identities=23% Similarity=0.379 Sum_probs=14.9
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHH
Q 004470 714 YYFFVDINFEEGNTEITLELCDAAIE 739 (751)
Q Consensus 714 ~~~l~~~~~~~g~~~~A~~~~~~~~~ 739 (751)
+..++..+...|++++|...++++++
T Consensus 4 ~~~~a~~~~~~~~~~~a~~~~~~~~~ 29 (34)
T smart00028 4 LYNLGNAYLKLGDYDEALEYYEKALE 29 (34)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHc
Confidence 44455555566666666666655554
No 384
>PHA02875 ankyrin repeat protein; Provisional
Probab=67.66 E-value=1.4e+02 Score=31.95 Aligned_cols=17 Identities=18% Similarity=0.335 Sum_probs=8.4
Q ss_pred HHHHHhcCCHHHHHHHH
Q 004470 298 INGYCYLGELQRVLKLI 314 (751)
Q Consensus 298 i~~~~~~g~~~~A~~~~ 314 (751)
+...+..|+.+.+..++
T Consensus 72 L~~A~~~g~~~~v~~Ll 88 (413)
T PHA02875 72 LHDAVEEGDVKAVEELL 88 (413)
T ss_pred HHHHHHCCCHHHHHHHH
Confidence 34445556655544444
No 385
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=66.41 E-value=21 Score=27.38 Aligned_cols=18 Identities=11% Similarity=0.193 Sum_probs=8.3
Q ss_pred hcCCHHHHHHHHHHHHHC
Q 004470 653 KARNMKEAWFLHKEMVQK 670 (751)
Q Consensus 653 ~~g~~~~A~~~~~~~~~~ 670 (751)
..++.++|+..|+..+++
T Consensus 18 ~~~~~~~Al~~W~~aL~k 35 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEK 35 (80)
T ss_pred ccchHHHHHHHHHHHHhh
Confidence 344444444444444443
No 386
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=66.32 E-value=2.5e+02 Score=32.44 Aligned_cols=50 Identities=6% Similarity=0.032 Sum_probs=29.6
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCCCccCHHhHHHHHH---HHHhCCCCHHHHHHHHHhch
Q 004470 191 FFQVLVEARKLNEARKLFEKLLNYGLVISVDSCNLFLS---RLSNTCDGLRMVVKSFTEFP 248 (751)
Q Consensus 191 l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~---~l~~~~~~~~~a~~~~~~~~ 248 (751)
+=++|.+.|++++|++.-+. .|+.. ..++. .++...+++..|-++|.++.
T Consensus 364 vWk~yLd~g~y~kAL~~ar~------~p~~l--e~Vl~~qAdf~f~~k~y~~AA~~yA~t~ 416 (911)
T KOG2034|consen 364 VWKTYLDKGEFDKALEIART------RPDAL--ETVLLKQADFLFQDKEYLRAAEIYAETL 416 (911)
T ss_pred HHHHHHhcchHHHHHHhccC------CHHHH--HHHHHHHHHHHHhhhHHHHHHHHHHHhh
Confidence 44678899999999876542 24433 22221 22224567777777776663
No 387
>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]
Probab=66.27 E-value=81 Score=31.83 Aligned_cols=52 Identities=13% Similarity=0.129 Sum_probs=22.4
Q ss_pred HcCCHHHHHHHHHHHHHC---CCCCCHHHHH--HHHHHHHhcCCHHHHHHHHHHHHH
Q 004470 618 LRNDMRTTAKIYKGMCAQ---GITPDGNTYN--ILLQGHCKARNMKEAWFLHKEMVQ 669 (751)
Q Consensus 618 ~~g~~~~A~~~~~~m~~~---g~~p~~~~~~--~li~~~~~~g~~~~A~~~~~~~~~ 669 (751)
..++.++|.++++++.+. .-.|+.+.|. ..+..+...|+.+++.+++++..+
T Consensus 87 ~~~D~~~al~~Le~i~~~~~~~~e~~av~~~~t~~~r~~L~i~DLk~~kk~ldd~~~ 143 (380)
T KOG2908|consen 87 QISDKDEALEFLEKIIEKLKEYKEPDAVIYILTEIARLKLEINDLKEIKKLLDDLKS 143 (380)
T ss_pred HhccHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 334555555555555431 1123333332 223333444555555555544443
No 388
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=65.77 E-value=17 Score=25.58 Aligned_cols=28 Identities=25% Similarity=0.418 Sum_probs=15.5
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHcCC
Q 004470 715 YFFVDINFEEGNTEITLELCDAAIECYL 742 (751)
Q Consensus 715 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 742 (751)
+.++-++++.|++++|++.++.+++..+
T Consensus 5 Y~lAig~ykl~~Y~~A~~~~~~lL~~eP 32 (53)
T PF14853_consen 5 YYLAIGHYKLGEYEKARRYCDALLEIEP 32 (53)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHhhCC
Confidence 3444556666666666666666665543
No 389
>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]
Probab=65.66 E-value=75 Score=30.19 Aligned_cols=101 Identities=14% Similarity=0.165 Sum_probs=47.6
Q ss_pred CCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC---CHHHH--HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH
Q 004470 602 LKPNAATYNPLIKQHCLRNDMRTTAKIYKGMCAQGITP---DGNTY--NILLQGHCKARNMKEAWFLHKEMVQKGFNLTT 676 (751)
Q Consensus 602 ~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p---~~~~~--~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~ 676 (751)
+.++..-+|.|+--|.-...+.+|.+.|..- .|+.| |..++ ..-|......|+.++|++.....-..-+.-|.
T Consensus 22 ~~~~~~d~n~LVmnylv~eg~~EaA~~Fa~e--~~i~~~~~d~~~~~eR~~Ir~~I~~G~Ie~Aie~in~l~PeiLd~n~ 99 (228)
T KOG2659|consen 22 VSVMREDLNRLVMNYLVHEGYVEAAEKFAKE--SGIKPPSIDLDSMDERLQIRRAIEEGQIEEAIEKVNQLNPEILDTNR 99 (228)
T ss_pred cCcchhhHHHHHHHHHHhccHHHHHHHhccc--cCCCCccCchhhHhHHHHHHHHHHhccHHHHHHHHHHhChHHHccch
Confidence 3445555566655555555555555554432 23333 22222 23345556667777776666655332222232
Q ss_pred HHHHHH----HHHHHhcCCHHHHHHHHHHHHH
Q 004470 677 SSYNAL----IKGFLKRKKYLEARELFEEMRR 704 (751)
Q Consensus 677 ~~~~~l----~~~~~~~g~~~~A~~~~~~~~~ 704 (751)
..+-.| +--+.+.|..++|+++++.-+.
T Consensus 100 ~l~F~Lq~q~lIEliR~~~~eeal~F~q~~LA 131 (228)
T KOG2659|consen 100 ELFFHLQQLHLIELIREGKTEEALEFAQTKLA 131 (228)
T ss_pred hHHHHHHHHHHHHHHHhhhHHHHHHHHHHHcc
Confidence 222221 1123355666666666655443
No 390
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=64.68 E-value=89 Score=26.76 Aligned_cols=44 Identities=9% Similarity=0.136 Sum_probs=23.1
Q ss_pred HHHHHHHHHHhCCCccCHHhHHHHHHHHHhCCCCHHHHHHHHHh
Q 004470 203 EARKLFEKLLNYGLVISVDSCNLFLSRLSNTCDGLRMVVKSFTE 246 (751)
Q Consensus 203 ~A~~~~~~~~~~g~~p~~~~~~~ll~~l~~~~~~~~~a~~~~~~ 246 (751)
++.++|..|...|+--....+-..-+.+....|++.+|.++|+.
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~ 124 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQL 124 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 77777777776665544433333333333345555555555543
No 391
>PHA02875 ankyrin repeat protein; Provisional
Probab=64.65 E-value=1.8e+02 Score=30.89 Aligned_cols=9 Identities=0% Similarity=-0.263 Sum_probs=3.8
Q ss_pred HHHHhcCCH
Q 004470 299 NGYCYLGEL 307 (751)
Q Consensus 299 ~~~~~~g~~ 307 (751)
...+..|+.
T Consensus 40 ~~A~~~~~~ 48 (413)
T PHA02875 40 KLAMKFRDS 48 (413)
T ss_pred HHHHHcCCH
Confidence 333444444
No 392
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=64.25 E-value=63 Score=31.67 Aligned_cols=86 Identities=19% Similarity=0.181 Sum_probs=40.1
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHh--cCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHH--
Q 004470 262 MIHCLCRFGKIKEAHLLLLQMEL--RGCSPDVVSFSTIINGYCYLGELQRVLKLIEEMQIKGLKPNPYTYNSVVRLLC-- 337 (751)
Q Consensus 262 li~~~~~~g~~~~A~~~~~~m~~--~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~-- 337 (751)
=|.++...|++.+++...-+--+ ..++| .....=|-.|.+.|++..+.++-+......-.-+...|..++..|.
T Consensus 89 GIQALAEmnrWreVLsWvlqyYq~pEklPp--kIleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~ 166 (309)
T PF07163_consen 89 GIQALAEMNRWREVLSWVLQYYQVPEKLPP--KILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLH 166 (309)
T ss_pred hHHHHHHHhhHHHHHHHHHHHhcCcccCCH--HHHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHH
Confidence 35666666666666554333211 11222 2223334445566666666666655554311112333554443333
Q ss_pred ---hcCCHHHHHHHH
Q 004470 338 ---KTSKVVEAETIL 349 (751)
Q Consensus 338 ---~~g~~~~A~~~~ 349 (751)
-.|.+++|+++.
T Consensus 167 VLlPLG~~~eAeelv 181 (309)
T PF07163_consen 167 VLLPLGHFSEAEELV 181 (309)
T ss_pred HHhccccHHHHHHHH
Confidence 245555555544
No 393
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=63.64 E-value=20 Score=27.47 Aligned_cols=48 Identities=8% Similarity=0.098 Sum_probs=25.3
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHhcCChhHHHHHHH
Q 004470 688 KRKKYLEARELFEEMRRGGLVADR--EIYYFFVDINFEEGNTEITLELCD 735 (751)
Q Consensus 688 ~~g~~~~A~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~A~~~~~ 735 (751)
...+.++|+..|++.++.-..+.. .+.-.++.+|+..|++++++++--
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~ 67 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFAL 67 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555666666666666654222111 223344556666666666665543
No 394
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=62.58 E-value=2 Score=37.91 Aligned_cols=83 Identities=12% Similarity=0.092 Sum_probs=44.4
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 004470 332 VVRLLCKTSKVVEAETILREMMNQGIVPDNVIYTTLIDGFCKMGNVAAAYRLFDEMRGLNIIPDLLTYTAIICGFCLTGK 411 (751)
Q Consensus 332 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~ 411 (751)
++..+.+.+..+....+++.+...+...+....+.++..|++.++.++..++++... ..-...++..+.+.|.
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~-------~yd~~~~~~~c~~~~l 85 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTSN-------NYDLDKALRLCEKHGL 85 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSS-------SS-CTHHHHHHHTTTS
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHccccc-------ccCHHHHHHHHHhcch
Confidence 345555566666666666666655544556666667777777666666666555111 1222344445555555
Q ss_pred HHHHHHHHHH
Q 004470 412 MVEAEKLFHE 421 (751)
Q Consensus 412 ~~~A~~~~~~ 421 (751)
+++|.-++.+
T Consensus 86 ~~~a~~Ly~~ 95 (143)
T PF00637_consen 86 YEEAVYLYSK 95 (143)
T ss_dssp HHHHHHHHHC
T ss_pred HHHHHHHHHH
Confidence 5555554443
No 395
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=62.24 E-value=1.7e+02 Score=28.93 Aligned_cols=84 Identities=11% Similarity=0.144 Sum_probs=46.3
Q ss_pred CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHH
Q 004470 253 CWNTASYNIMIHCLCRFGKIKEAHLLLLQMELRGCSPDVVSFSTIINGYCYLGELQRVLKLIEEMQIKGLKPNPYTYNSV 332 (751)
Q Consensus 253 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l 332 (751)
.-++.....+...|.+.|++.+|..-|-.-.. |+...+-.++..+...|...++ |...-..
T Consensus 87 ~Gdp~LH~~~a~~~~~e~~~~~A~~Hfl~~~~----~~~~~~~~ll~~~~~~~~~~e~--------------dlfi~Ra- 147 (260)
T PF04190_consen 87 FGDPELHHLLAEKLWKEGNYYEAERHFLLGTD----PSAFAYVMLLEEWSTKGYPSEA--------------DLFIARA- 147 (260)
T ss_dssp T--HHHHHHHHHHHHHTT-HHHHHHHHHTS-H----HHHHHHHHHHHHHHHHTSS--H--------------HHHHHHH-
T ss_pred CCCHHHHHHHHHHHHhhccHHHHHHHHHhcCC----hhHHHHHHHHHHHHHhcCCcch--------------hHHHHHH-
Confidence 34788889999999999999999877633222 3343433344444444443333 1111222
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHC
Q 004470 333 VRLLCKTSKVVEAETILREMMNQ 355 (751)
Q Consensus 333 i~~~~~~g~~~~A~~~~~~m~~~ 355 (751)
+-.|.-.++...|...++...+.
T Consensus 148 VL~yL~l~n~~~A~~~~~~f~~~ 170 (260)
T PF04190_consen 148 VLQYLCLGNLRDANELFDTFTSK 170 (260)
T ss_dssp HHHHHHTTBHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHH
Confidence 23355567788888777666544
No 396
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=62.17 E-value=1e+02 Score=26.59 Aligned_cols=77 Identities=6% Similarity=0.022 Sum_probs=54.6
Q ss_pred CCChhHHHHHHHHHHhcCChH---HHHHHHHHHHcCCCCCchhhhHHHHHHHHHhhhcCCCC-hhhHHHHHHHHHhcCCh
Q 004470 126 EPILEARCIVVQISVAAKDLK---TAHGLIHDFWAKPNLDASIAFTHFVERLIYTYKDWGSD-PHVFDIFFQVLVEARKL 201 (751)
Q Consensus 126 ~~~~~~~~~~~~~l~~~~~~~---~a~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~~~~~l~~~~~~~g~~ 201 (751)
..+.++.+.+++.|.++++-+ +...+|+.+++.. .|.. -.....|+-++.+.+++
T Consensus 29 ~~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~---------------------~~~~rRe~lyYLAvg~yRlkeY 87 (149)
T KOG3364|consen 29 DVSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSA---------------------HPERRRECLYYLAVGHYRLKEY 87 (149)
T ss_pred cchHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhc---------------------CcccchhhhhhhHHHHHHHhhH
Confidence 456778888999999887654 5566777776521 0211 12345688899999999
Q ss_pred hHHHHHHHHHHhCCCccCHHhHHH
Q 004470 202 NEARKLFEKLLNYGLVISVDSCNL 225 (751)
Q Consensus 202 ~~A~~~~~~~~~~g~~p~~~~~~~ 225 (751)
+.++.+.+.+++. .||+.-...
T Consensus 88 ~~s~~yvd~ll~~--e~~n~Qa~~ 109 (149)
T KOG3364|consen 88 SKSLRYVDALLET--EPNNRQALE 109 (149)
T ss_pred HHHHHHHHHHHhh--CCCcHHHHH
Confidence 9999999999987 677654433
No 397
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=62.04 E-value=1.8e+02 Score=29.30 Aligned_cols=95 Identities=21% Similarity=0.163 Sum_probs=40.7
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHc----CCCCCHhhHHHHHHH-HHHcCCHHHHHHHHHHHHHCCCCCC----HHH
Q 004470 573 TFNVLMNGFCMSGMIEDGEKLLKWMLEK----GLKPNAATYNPLIKQ-HCLRNDMRTTAKIYKGMCAQGITPD----GNT 643 (751)
Q Consensus 573 ~~~~li~~~~~~g~~~~A~~l~~~~~~~----g~~p~~~~~~~l~~~-~~~~g~~~~A~~~~~~m~~~g~~p~----~~~ 643 (751)
.+.....-||+.|+.+.|.+.+.+..++ |.+.|...+..-+.. |....-+.+-++..+.+.+.|-..+ ..+
T Consensus 106 a~~~kaeYycqigDkena~~~~~~t~~ktvs~g~kiDVvf~~iRlglfy~D~~lV~~~iekak~liE~GgDWeRrNRlKv 185 (393)
T KOG0687|consen 106 AMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKIDVVFYKIRLGLFYLDHDLVTESIEKAKSLIEEGGDWERRNRLKV 185 (393)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCChhhhhhHHH
Confidence 3444445556666666665555444332 444454444332222 2222223334444444444443322 122
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004470 644 YNILLQGHCKARNMKEAWFLHKEMVQ 669 (751)
Q Consensus 644 ~~~li~~~~~~g~~~~A~~~~~~~~~ 669 (751)
|..+- +....++.+|-.+|-+.+.
T Consensus 186 Y~Gly--~msvR~Fk~Aa~Lfld~vs 209 (393)
T KOG0687|consen 186 YQGLY--CMSVRNFKEAADLFLDSVS 209 (393)
T ss_pred HHHHH--HHHHHhHHHHHHHHHHHcc
Confidence 32221 2234456666666555443
No 398
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=60.73 E-value=1.8e+02 Score=28.73 Aligned_cols=51 Identities=18% Similarity=0.247 Sum_probs=31.7
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH-------HHHHHHHHHcCChhHHHH
Q 004470 402 IICGFCLTGKMVEAEKLFHEMLGRGLEPDEIVY-------TALIDGYCKAGGMKKAFS 452 (751)
Q Consensus 402 li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~-------~~li~~~~~~g~~~~A~~ 452 (751)
+.+-..+.+++++|+..+.+++..|...|..+. ..+...|...|+...--+
T Consensus 9 ~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~ 66 (421)
T COG5159 9 LANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGD 66 (421)
T ss_pred HHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHH
Confidence 445566777888888888888877776665443 234455555555544333
No 399
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=60.68 E-value=1.6e+02 Score=28.10 Aligned_cols=63 Identities=11% Similarity=-0.052 Sum_probs=36.9
Q ss_pred HHHHHHHHHhcCC-------HHHHHHHHHHHHHCCCCC----C-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 004470 644 YNILLQGHCKARN-------MKEAWFLHKEMVQKGFNL----T-TSSYNALIKGFLKRKKYLEARELFEEMRRGG 706 (751)
Q Consensus 644 ~~~li~~~~~~g~-------~~~A~~~~~~~~~~~~~p----~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 706 (751)
+--+.+.|...|+ +..|.+.|.+..+..-.| + ....-.++....+.|++++|.+.|.+++..+
T Consensus 121 ~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~ 195 (214)
T PF09986_consen 121 CLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGSK 195 (214)
T ss_pred HHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCC
Confidence 3444455555555 344566666665542221 1 2333455666677888888888888888754
No 400
>PRK11619 lytic murein transglycosylase; Provisional
Probab=60.07 E-value=3.1e+02 Score=31.31 Aligned_cols=314 Identities=11% Similarity=0.055 Sum_probs=155.2
Q ss_pred HHHHhcCChhHHHHHHHHHHhCCCccCHHhHHHHHHHHHhCCCCHHHHHHHHHhchhcCCCcCHHHHHHHHHHHHhcCCH
Q 004470 193 QVLVEARKLNEARKLFEKLLNYGLVISVDSCNLFLSRLSNTCDGLRMVVKSFTEFPELGICWNTASYNIMIHCLCRFGKI 272 (751)
Q Consensus 193 ~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 272 (751)
....+.|+...+..+-.++...- -.....|..+...+ .....++...++++-... +.....-...+..+.+.+++
T Consensus 41 ~~a~~~g~~~~~~~~~~~l~d~p-L~~yl~y~~L~~~l--~~~~~~ev~~Fl~~~~~~--P~~~~Lr~~~l~~La~~~~w 115 (644)
T PRK11619 41 KQAWDNRQMDVVEQLMPTLKDYP-LYPYLEYRQLTQDL--MNQPAVQVTNFIRANPTL--PPARSLQSRFVNELARREDW 115 (644)
T ss_pred HHHHHCCCHHHHHHHHHhccCCC-cHhHHHHHHHHhcc--ccCCHHHHHHHHHHCCCC--chHHHHHHHHHHHHHHccCH
Confidence 33456677777666666553221 11222233333222 122445444444443322 11223333444455666677
Q ss_pred HHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCHHHH--HHHHH
Q 004470 273 KEAHLLLLQMELRGCSPDVVSFSTIINGYCYLGELQRVLKLIEEMQIKGLKPNPYTYNSVVRLLCKTSKVVEA--ETILR 350 (751)
Q Consensus 273 ~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A--~~~~~ 350 (751)
.+.+.++.. .+.+...--....+....|+.++|.+....+=..|. ..+..++.++..+.+.|.+... .+-++
T Consensus 116 ~~~~~~~~~-----~p~~~~~~c~~~~A~~~~G~~~~A~~~a~~lW~~g~-~~p~~cd~l~~~~~~~g~lt~~d~w~R~~ 189 (644)
T PRK11619 116 RGLLAFSPE-----KPKPVEARCNYYYAKWATGQQQEAWQGAKELWLTGK-SLPNACDKLFSVWQQSGKQDPLAYLERIR 189 (644)
T ss_pred HHHHHhcCC-----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCC-CCChHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 666653211 123444444556667777777777666666654442 2456677777777666654332 22233
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHH------------cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH--hcCCHHHHH
Q 004470 351 EMMNQGIVPDNVIYTTLIDGFCK------------MGNVAAAYRLFDEMRGLNIIPDLLTYTAIICGFC--LTGKMVEAE 416 (751)
Q Consensus 351 ~m~~~g~~p~~~~~~~li~~~~~------------~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~--~~g~~~~A~ 416 (751)
.+...| +...-..|...+.. ..+...+...+.. +.|+...-..++.++. ...+.+.|.
T Consensus 190 ~al~~~---~~~lA~~l~~~l~~~~~~~a~a~~al~~~p~~~~~~~~~-----~~~~~~~~~~~~~~l~Rlar~d~~~A~ 261 (644)
T PRK11619 190 LAMKAG---NTGLVTYLAKQLPADYQTIASALIKLQNDPNTVETFART-----TGPTDFTRQMAAVAFASVARQDAENAR 261 (644)
T ss_pred HHHHCC---CHHHHHHHHHhcChhHHHHHHHHHHHHHCHHHHHHHhhc-----cCCChhhHHHHHHHHHHHHHhCHHHHH
Confidence 333332 22222222221100 0111222111111 1123222221222222 345668888
Q ss_pred HHHHHHHHCC-CCCCH--HHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 004470 417 KLFHEMLGRG-LEPDE--IVYTALIDGYCKAGGMKKAFSLHNNMVHMRLTPNVVTYTALADGLCKSGELETANELLHEMC 493 (751)
Q Consensus 417 ~~~~~m~~~~-~~p~~--~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 493 (751)
.++....... +.+.. .+...+.......+...+|...+....... .+.......+....+.++++.+...+..|.
T Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~~--~~~~~~e~r~r~Al~~~dw~~~~~~i~~L~ 339 (644)
T PRK11619 262 LMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMRS--QSTSLLERRVRMALGTGDRRGLNTWLARLP 339 (644)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhccccc--CCcHHHHHHHHHHHHccCHHHHHHHHHhcC
Confidence 8888875442 22222 233444433344333667777777654432 244445555556668899999888888885
Q ss_pred HcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 004470 494 RKGLQLNIYTYNSIVNGLCKAGNILQAVKLMEDME 528 (751)
Q Consensus 494 ~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 528 (751)
...-. ...-..=+..++...|+.++|...|+.+.
T Consensus 340 ~~~~~-~~rw~YW~aRa~~~~g~~~~A~~~~~~~a 373 (644)
T PRK11619 340 MEAKE-KDEWRYWQADLLLEQGRKAEAEEILRQLM 373 (644)
T ss_pred Hhhcc-CHhhHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 54222 33444456667677899999999999874
No 401
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=59.61 E-value=1.8e+02 Score=28.60 Aligned_cols=20 Identities=30% Similarity=0.353 Sum_probs=12.9
Q ss_pred HHHHHHHHcCCHHHHHHHHH
Q 004470 366 TLIDGFCKMGNVAAAYRLFD 385 (751)
Q Consensus 366 ~li~~~~~~g~~~~A~~~~~ 385 (751)
-+|..+.+.|.+.+|+.+..
T Consensus 130 Kli~l~y~~~~YsdalalIn 149 (421)
T COG5159 130 KLIYLLYKTGKYSDALALIN 149 (421)
T ss_pred HHHHHHHhcccHHHHHHHHH
Confidence 45666677777777766543
No 402
>PRK10941 hypothetical protein; Provisional
Probab=59.59 E-value=1.4e+02 Score=29.68 Aligned_cols=77 Identities=8% Similarity=-0.137 Sum_probs=53.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHH
Q 004470 644 YNILLQGHCKARNMKEAWFLHKEMVQKGFNLTTSSYNALIKGFLKRKKYLEARELFEEMRRGG-LVADREIYYFFVDIN 721 (751)
Q Consensus 644 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~l~~~~ 721 (751)
.+.+-.+|.+.++++.|++..+.++...+. ++.-+.--+-.|.+.|.+..|..-++..++.- -.|+.......+..+
T Consensus 184 l~nLK~~~~~~~~~~~AL~~~e~ll~l~P~-dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ik~ql~~l 261 (269)
T PRK10941 184 LDTLKAALMEEKQMELALRASEALLQFDPE-DPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMIRAQIHSI 261 (269)
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHHHHHHHHH
Confidence 345666778888888888888888887655 66667777777888888888888888887742 133444444443333
No 403
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=59.52 E-value=4.6 Score=40.27 Aligned_cols=89 Identities=18% Similarity=-0.058 Sum_probs=73.3
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCChhHH
Q 004470 652 CKARNMKEAWFLHKEMVQKGFNLTTSSYNALIKGFLKRKKYLEARELFEEMRRGGLVADR-EIYYFFVDINFEEGNTEIT 730 (751)
Q Consensus 652 ~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A 730 (751)
...|.+++|++.|...++..+ +....|..-.+++.+.++...|++-+..+++. .||. .-|-.-..+..-.|+|++|
T Consensus 125 ln~G~~~~ai~~~t~ai~lnp-~~a~l~~kr~sv~lkl~kp~~airD~d~A~ei--n~Dsa~~ykfrg~A~rllg~~e~a 201 (377)
T KOG1308|consen 125 LNDGEFDTAIELFTSAIELNP-PLAILYAKRASVFLKLKKPNAAIRDCDFAIEI--NPDSAKGYKFRGYAERLLGNWEEA 201 (377)
T ss_pred hcCcchhhhhcccccccccCC-chhhhcccccceeeeccCCchhhhhhhhhhcc--CcccccccchhhHHHHHhhchHHH
Confidence 356889999999999998854 47788888899999999999999999998875 4543 4465666677888999999
Q ss_pred HHHHHHHHHcCCC
Q 004470 731 LELCDAAIECYLV 743 (751)
Q Consensus 731 ~~~~~~~~~~~~~ 743 (751)
.+.+..+.+.++.
T Consensus 202 a~dl~~a~kld~d 214 (377)
T KOG1308|consen 202 AHDLALACKLDYD 214 (377)
T ss_pred HHHHHHHHhcccc
Confidence 9999999887764
No 404
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=59.52 E-value=1.9e+02 Score=28.74 Aligned_cols=61 Identities=10% Similarity=0.168 Sum_probs=32.2
Q ss_pred CCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 004470 428 EPDEIVYTALIDGYCKAGGMKKAFSLHNNMVHM-RLTPNVVTYTALADGLCKSGELETANEL 488 (751)
Q Consensus 428 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~A~~l 488 (751)
.++..+...++..+++.+++.+-.++++..... ++..|...|..+|+.....|+..-...+
T Consensus 199 ~l~~~vi~~Il~~L~~~~dW~kl~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~ki 260 (292)
T PF13929_consen 199 SLTRNVIISILEILAESRDWNKLFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKI 260 (292)
T ss_pred CCChhHHHHHHHHHHhcccHHHHHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHH
Confidence 344455555555555566665555555554433 3444555555555555555554433333
No 405
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=59.38 E-value=3.8e+02 Score=32.16 Aligned_cols=248 Identities=10% Similarity=-0.023 Sum_probs=131.0
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 004470 463 TPNVVTYTALADGLCKSGELETANELLHEMCRKGLQLNIYTYNSIVNGLCKAGNILQAVKLMEDMEVAGFHPDTFTYTTI 542 (751)
Q Consensus 463 ~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 542 (751)
.+++.+-...+..+.+.+.. ++...+..+.+. ++...-...+.++.+.+........+..+.. .+|..+-...
T Consensus 632 D~d~~VR~~Av~~L~~~~~~-~~~~~L~~aL~D---~d~~VR~~Aa~aL~~l~~~~~~~~~L~~~L~---~~d~~VR~~A 704 (897)
T PRK13800 632 DPDPGVRRTAVAVLTETTPP-GFGPALVAALGD---GAAAVRRAAAEGLRELVEVLPPAPALRDHLG---SPDPVVRAAA 704 (897)
T ss_pred CCCHHHHHHHHHHHhhhcch-hHHHHHHHHHcC---CCHHHHHHHHHHHHHHHhccCchHHHHHHhc---CCCHHHHHHH
Confidence 35666666666666666653 344444444432 2444434444444443221111223333333 2555555555
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHHcCCH
Q 004470 543 MDAYCKSGEMVKAHELLRDMLDKGLQPSVVTFNVLMNGFCMSGMIEDGEKLLKWMLEKGLKPNAATYNPLIKQHCLRNDM 622 (751)
Q Consensus 543 i~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~g~~p~~~~~~~l~~~~~~~g~~ 622 (751)
+.++...+..+ .. .+-.+.+ .+|...-...+.++.+.+..+. +..+. -.++..+-.....++...++.
T Consensus 705 ~~aL~~~~~~~-~~-~l~~~L~---D~d~~VR~~Av~aL~~~~~~~~----l~~~l---~D~~~~VR~~aa~aL~~~~~~ 772 (897)
T PRK13800 705 LDVLRALRAGD-AA-LFAAALG---DPDHRVRIEAVRALVSVDDVES----VAGAA---TDENREVRIAVAKGLATLGAG 772 (897)
T ss_pred HHHHHhhccCC-HH-HHHHHhc---CCCHHHHHHHHHHHhcccCcHH----HHHHh---cCCCHHHHHHHHHHHHHhccc
Confidence 56555443211 11 2222222 3455555555666655544322 12222 244555556666666666654
Q ss_pred HH-HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 004470 623 RT-TAKIYKGMCAQGITPDGNTYNILLQGHCKARNMKEAWFLHKEMVQKGFNLTTSSYNALIKGFLKRKKYLEARELFEE 701 (751)
Q Consensus 623 ~~-A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 701 (751)
+. +...+..+.. .+|...-...+.++.+.|..+.+...+..+++. ++..+-...+.++...+. +++...+-.
T Consensus 773 ~~~~~~~L~~ll~---D~d~~VR~aA~~aLg~~g~~~~~~~~l~~aL~d---~d~~VR~~Aa~aL~~l~~-~~a~~~L~~ 845 (897)
T PRK13800 773 GAPAGDAVRALTG---DPDPLVRAAALAALAELGCPPDDVAAATAALRA---SAWQVRQGAARALAGAAA-DVAVPALVE 845 (897)
T ss_pred cchhHHHHHHHhc---CCCHHHHHHHHHHHHhcCCcchhHHHHHHHhcC---CChHHHHHHHHHHHhccc-cchHHHHHH
Confidence 32 3444555543 356666677777788877765554555555532 355666667777776665 456666666
Q ss_pred HHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 004470 702 MRRGGLVADREIYYFFVDINFEEGNTEITLELCDAAIE 739 (751)
Q Consensus 702 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 739 (751)
+++ .|+..+....+.+|.+.+....+...+..+++
T Consensus 846 ~L~---D~~~~VR~~A~~aL~~~~~~~~a~~~L~~al~ 880 (897)
T PRK13800 846 ALT---DPHLDVRKAAVLALTRWPGDPAARDALTTALT 880 (897)
T ss_pred Hhc---CCCHHHHHHHHHHHhccCCCHHHHHHHHHHHh
Confidence 664 56777777777777775434566666666655
No 406
>PRK10941 hypothetical protein; Provisional
Probab=58.46 E-value=57 Score=32.30 Aligned_cols=67 Identities=12% Similarity=-0.099 Sum_probs=55.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC
Q 004470 678 SYNALIKGFLKRKKYLEARELFEEMRRGGLVADREIYYFFVDINFEEGNTEITLELCDAAIECYLVGK 745 (751)
Q Consensus 678 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 745 (751)
..+.+-.+|.+.++++.|+...+.++... |.|+.-+.--+-.|.+.|.+..|..=++..+++-..+.
T Consensus 183 ml~nLK~~~~~~~~~~~AL~~~e~ll~l~-P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp 249 (269)
T PRK10941 183 LLDTLKAALMEEKQMELALRASEALLQFD-PEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDP 249 (269)
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCch
Confidence 34567778899999999999999999864 55676677777889999999999999999998866544
No 407
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=58.46 E-value=99 Score=25.10 Aligned_cols=50 Identities=12% Similarity=0.208 Sum_probs=20.3
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC
Q 004470 476 LCKSGELETANELLHEMCRKGLQLNIYTYNSIVNGLCKAGNILQAVKLMEDMEVAG 531 (751)
Q Consensus 476 ~~~~g~~~~A~~l~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 531 (751)
+...|++++|..+.+.+ +.||...|.+|.. -+.|-.+++..-+.+|..+|
T Consensus 49 LmNrG~Yq~Al~l~~~~----~~pdlepw~ALce--~rlGl~s~l~~rl~rla~sg 98 (115)
T TIGR02508 49 LMNRGDYQSALQLGNKL----CYPDLEPWLALCE--WRLGLGSALESRLNRLAASG 98 (115)
T ss_pred HHccchHHHHHHhcCCC----CCchHHHHHHHHH--HhhccHHHHHHHHHHHHhCC
Confidence 34444444444444333 2344444433322 23344444444444444433
No 408
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=57.69 E-value=62 Score=25.78 Aligned_cols=35 Identities=17% Similarity=0.080 Sum_probs=28.7
Q ss_pred CCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 004470 181 WGSDPHVFDIFFQVLVEARKLNEARKLFEKLLNYG 215 (751)
Q Consensus 181 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g 215 (751)
-|.++.....|+..+...|++++|++.+-.+++..
T Consensus 18 ~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~d 52 (90)
T PF14561_consen 18 NPDDLDARYALADALLAAGDYEEALDQLLELVRRD 52 (90)
T ss_dssp STT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-
T ss_pred CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 37788888899999999999999999999998764
No 409
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=56.09 E-value=1e+02 Score=24.53 Aligned_cols=53 Identities=23% Similarity=0.122 Sum_probs=25.8
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCh
Q 004470 675 TTSSYNALIKGFLKRKKYLEARELFEEMRRGGLVA-DREIYYFFVDINFEEGNT 727 (751)
Q Consensus 675 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~ 727 (751)
|......+...+...|++++|++.+-.+++..-.. +...-..++..+.-.|.-
T Consensus 21 D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~~ 74 (90)
T PF14561_consen 21 DLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGPG 74 (90)
T ss_dssp -HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-TT
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCCC
Confidence 45555556666666666666666666665532211 333344455555444443
No 410
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=54.90 E-value=1.4e+02 Score=31.41 Aligned_cols=52 Identities=13% Similarity=0.110 Sum_probs=27.6
Q ss_pred HhcCChhHHHHHHHHHHHcCCCCCHh--hHHHHHHHHH--HcCCHHHHHHHHHHHHH
Q 004470 582 CMSGMIEDGEKLLKWMLEKGLKPNAA--TYNPLIKQHC--LRNDMRTTAKIYKGMCA 634 (751)
Q Consensus 582 ~~~g~~~~A~~l~~~~~~~g~~p~~~--~~~~l~~~~~--~~g~~~~A~~~~~~m~~ 634 (751)
.+.+++..|.++++.+... +.++.. .+..+..+|. ..-++++|.+.++....
T Consensus 142 ~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~ 197 (379)
T PF09670_consen 142 FNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLK 197 (379)
T ss_pred HhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 3556667777777666665 333333 2333333332 34455666666665554
No 411
>COG2178 Predicted RNA-binding protein of the translin family [Translation, ribosomal structure and biogenesis]
Probab=53.60 E-value=1.4e+02 Score=27.62 Aligned_cols=16 Identities=25% Similarity=0.389 Sum_probs=7.8
Q ss_pred HcCCHHHHHHHHHHHH
Q 004470 373 KMGNVAAAYRLFDEMR 388 (751)
Q Consensus 373 ~~g~~~~A~~~~~~m~ 388 (751)
+.|+++.|.+.++-|.
T Consensus 133 ~~~~~~~Ae~~~~~ME 148 (204)
T COG2178 133 RKGSFEEAERFLKFME 148 (204)
T ss_pred HhccHHHHHHHHHHHH
Confidence 3445555555554444
No 412
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=53.41 E-value=72 Score=29.73 Aligned_cols=32 Identities=19% Similarity=0.172 Sum_probs=19.6
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004470 673 NLTTSSYNALIKGFLKRKKYLEARELFEEMRR 704 (751)
Q Consensus 673 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 704 (751)
.|++.+|..++.++...|+.++|....+++..
T Consensus 141 ~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~ 172 (193)
T PF11846_consen 141 RPDPNVYQRYALALALLGDPEEARQWLARARR 172 (193)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 45666666666666666666666666666555
No 413
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=51.68 E-value=36 Score=24.85 Aligned_cols=24 Identities=38% Similarity=0.559 Sum_probs=11.4
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHH
Q 004470 680 NALIKGFLKRKKYLEARELFEEMR 703 (751)
Q Consensus 680 ~~l~~~~~~~g~~~~A~~~~~~~~ 703 (751)
..++.+|...|++++|.++++++.
T Consensus 27 LqvI~gllqlg~~~~a~eYi~~~~ 50 (62)
T PF14689_consen 27 LQVIYGLLQLGKYEEAKEYIKELS 50 (62)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHH
Confidence 344555555555555555554443
No 414
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=50.83 E-value=1.1e+02 Score=25.91 Aligned_cols=41 Identities=7% Similarity=0.198 Sum_probs=24.0
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004470 664 HKEMVQKGFNLTTSSYNALIKGFLKRKKYLEARELFEEMRR 704 (751)
Q Consensus 664 ~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 704 (751)
++.....++.|++.+...-+.++.+.+++.-|.++|+-+..
T Consensus 72 lN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~ 112 (149)
T KOG4077|consen 72 LNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKD 112 (149)
T ss_pred HHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 34444445556666666666666666666666666665544
No 415
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=49.81 E-value=1.2e+02 Score=25.97 Aligned_cols=44 Identities=18% Similarity=0.234 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHCCCC-CCHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 004470 694 EARELFEEMRRGGLV-ADREIYYFFVDINFEEGNTEITLELCDAA 737 (751)
Q Consensus 694 ~A~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 737 (751)
++.++|+.|..+|+- --+..|...+..+...|++++|.++++..
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~G 125 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQLG 125 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHhh
Confidence 667777777665553 34555666666777777777777776654
No 416
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=49.44 E-value=2.5e+02 Score=27.01 Aligned_cols=23 Identities=9% Similarity=0.183 Sum_probs=15.9
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCC
Q 004470 406 FCLTGKMVEAEKLFHEMLGRGLE 428 (751)
Q Consensus 406 ~~~~g~~~~A~~~~~~m~~~~~~ 428 (751)
....+++.+|+++|++.....+.
T Consensus 164 aa~leqY~~Ai~iyeqva~~s~~ 186 (288)
T KOG1586|consen 164 AAQLEQYSKAIDIYEQVARSSLD 186 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcc
Confidence 34557788888888887765443
No 417
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=49.21 E-value=2.8e+02 Score=27.51 Aligned_cols=66 Identities=20% Similarity=0.284 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHh----CCCCCCHHHHH-HHHHHHHhcCChhHHHHHHHHHHHcCC
Q 004470 537 FTYTTIMDAYCKSGEMVKAHELLRDMLD----KGLQPSVVTFN-VLMNGFCMSGMIEDGEKLLKWMLEKGL 602 (751)
Q Consensus 537 ~~~~~li~~~~~~g~~~~A~~~~~~~~~----~~~~p~~~~~~-~li~~~~~~g~~~~A~~l~~~~~~~g~ 602 (751)
..+..+...|++.++.+.+.+.+.+..+ .|.+.|+.... .|.-.|....-+++-++..+.+.++|.
T Consensus 116 ea~~n~aeyY~qi~D~~ng~~~~~~~~~~a~stg~KiDv~l~kiRlg~~y~d~~vV~e~lE~~~~~iEkGg 186 (412)
T COG5187 116 EADRNIAEYYCQIMDIQNGFEWMRRLMRDAMSTGLKIDVFLCKIRLGLIYGDRKVVEESLEVADDIIEKGG 186 (412)
T ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCC
Confidence 3444455555555555555554443332 23333332211 112222233334455555555555543
No 418
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=49.20 E-value=2.9e+02 Score=29.07 Aligned_cols=55 Identities=16% Similarity=0.228 Sum_probs=31.0
Q ss_pred HHHHcCCHHHHHHHHHHHHHCCCCCCHH--HHHHHHHHHH--HcCCHHHHHHHHHHHHhC
Q 004470 510 GLCKAGNILQAVKLMEDMEVAGFHPDTF--TYTTIMDAYC--KSGEMVKAHELLRDMLDK 565 (751)
Q Consensus 510 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~--~~~~li~~~~--~~g~~~~A~~~~~~~~~~ 565 (751)
.+.+.+++..|.++++++... ++++.. .+..+..+|. ..-++.+|.+.++.....
T Consensus 140 ~l~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 140 ELFNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 344667777777777777665 344333 3344444443 234566666666665543
No 419
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=49.16 E-value=1.1e+02 Score=24.08 Aligned_cols=38 Identities=18% Similarity=0.202 Sum_probs=17.3
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHH
Q 004470 688 KRKKYLEARELFEEMRRGGLVADREIYYFFVDINFEEGNTEIT 730 (751)
Q Consensus 688 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 730 (751)
..|+.+.|.+++..+. .| | ..+..++.++.+.|.-+-|
T Consensus 48 ~~g~~~~ar~LL~~L~-rg--~--~aF~~Fl~aLreT~~~~LA 85 (88)
T cd08819 48 NHGNESGARELLKRIV-QK--E--GWFSKFLQALRETEHHELA 85 (88)
T ss_pred ccCcHHHHHHHHHHhc-cC--C--cHHHHHHHHHHHcCchhhh
Confidence 3455555555555544 32 1 2233444455555444433
No 420
>PRK12798 chemotaxis protein; Reviewed
Probab=48.94 E-value=3.5e+02 Score=28.55 Aligned_cols=193 Identities=13% Similarity=0.089 Sum_probs=102.7
Q ss_pred HcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHhCCCCCC----HHHHHHHHHHHHhcCCh
Q 004470 513 KAGNILQAVKLMEDMEVAGFHPDTFTYTTIMDAYC-KSGEMVKAHELLRDMLDKGLQPS----VVTFNVLMNGFCMSGMI 587 (751)
Q Consensus 513 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~-~~g~~~~A~~~~~~~~~~~~~p~----~~~~~~li~~~~~~g~~ 587 (751)
-.|+..++.+.+..+.....++....|-.|+.+-. ...+..+|+++|+...-. -|. ......-+......|+.
T Consensus 124 ~~Gr~~~a~~~La~i~~~~l~~~lg~~laLv~a~l~~~~dP~~Al~~lD~aRLl--aPGTLvEEAALRRsi~la~~~g~~ 201 (421)
T PRK12798 124 LSGRGREARKLLAGVAPEYLPAELGAYLALVQGNLMVATDPATALKLLDQARLL--APGTLVEEAALRRSLFIAAQLGDA 201 (421)
T ss_pred HcCCHHHHHHHhhcCChhhcCchhhhHHHHHHHHHhcccCHHHHHHHHHHHHHh--CCchHHHHHHHHHhhHHHHhcCcH
Confidence 36788888888887776666677777777776543 445788888888876532 232 23344445555677888
Q ss_pred hHHHHHHHHHHHcC-CCCCHhh-HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCCHHHHHHH
Q 004470 588 EDGEKLLKWMLEKG-LKPNAAT-YNPLIKQHCLRNDMRTTAKIYKGMCAQGITPD--GNTYNILLQGHCKARNMKEAWFL 663 (751)
Q Consensus 588 ~~A~~l~~~~~~~g-~~p~~~~-~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~~~~~li~~~~~~g~~~~A~~~ 663 (751)
+++..+-.+....- ..|=..- +..+...+.+.++-..- +.+..++.. +.|+ ...|..+...-.-.|+.+-|...
T Consensus 202 ~rf~~la~~Y~rRF~~S~YA~~F~~~F~~~~~~~~d~~~~-~~l~~~ls~-~d~~~q~~lYL~iAR~Ali~Gk~~lA~~A 279 (421)
T PRK12798 202 DKFEALARNYLRRFRHSPYASQFAQRFVDLVVRLDDEIRD-ARLVEILSF-MDPERQRELYLRIARAALIDGKTELARFA 279 (421)
T ss_pred HHHHHHHHHHHHHhccCchHHHHHHHHHHHHHhccccccH-HHHHHHHHh-cCchhHHHHHHHHHHHHHHcCcHHHHHHH
Confidence 77766665555431 1111111 12222233333322111 223333332 2232 45677777777777888877777
Q ss_pred HHHHHHCCCCCCHH-HHHHHHHHH--HhcCCHHHHHHHHHHHHHCCCCC
Q 004470 664 HKEMVQKGFNLTTS-SYNALIKGF--LKRKKYLEARELFEEMRRGGLVA 709 (751)
Q Consensus 664 ~~~~~~~~~~p~~~-~~~~l~~~~--~~~g~~~~A~~~~~~~~~~~~~~ 709 (751)
-+++....-..+.. .-..|-.+. .-..++++|.+.+..+-...+.+
T Consensus 280 s~~A~~L~~~~~~~~~ra~LY~aaa~v~s~~~~~al~~L~~I~~~~L~~ 328 (421)
T PRK12798 280 SERALKLADPDSADAARARLYRGAALVASDDAESALEELSQIDRDKLSE 328 (421)
T ss_pred HHHHHHhccCCCcchHHHHHHHHHHccCcccHHHHHHHHhcCChhhCCh
Confidence 77776643111111 111111111 12455777777777665554444
No 421
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=47.94 E-value=2.7e+02 Score=26.96 Aligned_cols=57 Identities=14% Similarity=0.003 Sum_probs=33.4
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 004470 648 LQGHCKARNMKEAWFLHKEMVQKGFNLTTSSYNALIKGFLKRKKYLEARELFEEMRRG 705 (751)
Q Consensus 648 i~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 705 (751)
..++...|++-++++.-.+.+...+. +...|-.-+.+....=+.++|..-|.+.++.
T Consensus 237 ~QC~L~~~e~yevleh~seiL~~~~~-nvKA~frRakAhaa~Wn~~eA~~D~~~vL~l 293 (329)
T KOG0545|consen 237 CQCLLKKEEYYEVLEHCSEILRHHPG-NVKAYFRRAKAHAAVWNEAEAKADLQKVLEL 293 (329)
T ss_pred HHHHhhHHHHHHHHHHHHHHHhcCCc-hHHHHHHHHHHHHhhcCHHHHHHHHHHHHhc
Confidence 34444556666666666666665433 5555555555555555666666666666653
No 422
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=47.69 E-value=2.7e+02 Score=26.97 Aligned_cols=39 Identities=8% Similarity=0.094 Sum_probs=18.2
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 004470 543 MDAYCKSGEMVKAHELLRDMLDKGLQPSVVTFNVLMNGF 581 (751)
Q Consensus 543 i~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~ 581 (751)
+..+.+.|+++++...++++.+.+...+..--+.|..+|
T Consensus 8 Aklaeq~eRy~dmv~~mk~~~~~~~eLt~eERnLlsvay 46 (236)
T PF00244_consen 8 AKLAEQAERYDDMVEYMKQLIEMNPELTEEERNLLSVAY 46 (236)
T ss_dssp HHHHHHTTHHHHHHHHHHHHHHTSS---HHHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHH
Confidence 344445555555555555555554444444444444444
No 423
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=47.10 E-value=3e+02 Score=27.38 Aligned_cols=116 Identities=13% Similarity=0.161 Sum_probs=68.3
Q ss_pred CHHHHHHHHHHHHH-CCCCCCHHHHHHHHHHHHH-cC-ChhHHHHHHHHHHh-CCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 004470 411 KMVEAEKLFHEMLG-RGLEPDEIVYTALIDGYCK-AG-GMKKAFSLHNNMVH-MRLTPNVVTYTALADGLCKSGELETAN 486 (751)
Q Consensus 411 ~~~~A~~~~~~m~~-~~~~p~~~~~~~li~~~~~-~g-~~~~A~~~~~~~~~-~~~~~~~~~~~~li~~~~~~g~~~~A~ 486 (751)
.+.+|+.+|+.... ..+--|..+...+++.... .+ ....-.++.+-+.. .+-.++..+....+..++..+++.+-.
T Consensus 143 ~Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~kl~ 222 (292)
T PF13929_consen 143 IVVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWNKLF 222 (292)
T ss_pred HHHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHHHHH
Confidence 34556666653221 1233455555555555544 22 12222223333322 233556677777888888888888888
Q ss_pred HHHHHHHHc-CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 004470 487 ELLHEMCRK-GLQLNIYTYNSIVNGLCKAGNILQAVKLMED 526 (751)
Q Consensus 487 ~l~~~m~~~-g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 526 (751)
++++..... +..-|...|..+|+...+.|+..-..++.++
T Consensus 223 ~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~~ 263 (292)
T PF13929_consen 223 QFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIIDD 263 (292)
T ss_pred HHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhhC
Confidence 888776655 5556777888888888888887666655554
No 424
>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1. Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.
Probab=46.84 E-value=1.5e+02 Score=25.37 Aligned_cols=99 Identities=12% Similarity=0.086 Sum_probs=0.0
Q ss_pred HHHHHhhhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHcCCCCCchhhhHHHHHHHHHhhhcCCCChhhHHHHHHH
Q 004470 115 LDFFDWACLRREPILEARCIVVQISVAAKDLKTAHGLIHDFWAKPNLDASIAFTHFVERLIYTYKDWGSDPHVFDIFFQV 194 (751)
Q Consensus 115 l~~f~~~~~~~~~~~~~~~~~~~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~ 194 (751)
+++.+|+....|. .+.-+.-..+|+++++.- .-...|+.-+.-..+|...+..
T Consensus 26 ~~yI~W~~~~~p~--------------g~~~s~L~~lLerc~~~f-------------~~~~~YknD~RyLkiWi~ya~~ 78 (125)
T smart00777 26 LRYIKWTEENYPQ--------------GGKESGLLTLLERCIRYF-------------EDDERYKNDPRYLKIWLKYADN 78 (125)
T ss_pred HHHHHHHHHhCCC--------------CCchhhHHHHHHHHHHHh-------------hhhhhhcCCHHHHHHHHHHHHh
Q ss_pred HHhcCChhHHHHHHHHHHhCCCccCHHhHHHHHHHHHhCCCCHHHHHHHHHh
Q 004470 195 LVEARKLNEARKLFEKLLNYGLVISVDSCNLFLSRLSNTCDGLRMVVKSFTE 246 (751)
Q Consensus 195 ~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~l~~~~~~~~~a~~~~~~ 246 (751)
+ +++.++|..|.+.|+-.....+-.--+.+....|++.+|.++|+.
T Consensus 79 ~------~dp~~if~~L~~~~IG~~~AlfYe~~A~~lE~~g~~~~A~~iy~~ 124 (125)
T smart00777 79 C------DEPRELFQFLYSKGIGTKLALFYEEWAQLLEAAGRYKKADEVYQL 124 (125)
T ss_pred c------CCHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHc
No 425
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=45.70 E-value=1.4e+02 Score=24.83 Aligned_cols=26 Identities=19% Similarity=0.181 Sum_probs=20.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHh
Q 004470 259 YNIMIHCLCRFGKIKEAHLLLLQMEL 284 (751)
Q Consensus 259 ~~~li~~~~~~g~~~~A~~~~~~m~~ 284 (751)
|..|+..|..+|..++|++++.+...
T Consensus 42 ~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 42 YQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred HHHHHHHHHccCccHHHHHHHHHHhc
Confidence 67778888888888888888877765
No 426
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=45.34 E-value=1.6e+02 Score=25.12 Aligned_cols=45 Identities=11% Similarity=0.152 Sum_probs=33.1
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 004470 626 AKIYKGMCAQGITPDGNTYNILLQGHCKARNMKEAWFLHKEMVQK 670 (751)
Q Consensus 626 ~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 670 (751)
.+-+..+...++.|++.....-++++.+.+++.-|.++|+-...+
T Consensus 69 rkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K 113 (149)
T KOG4077|consen 69 RKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDK 113 (149)
T ss_pred HHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 344455556677788888888888888888888888888877665
No 427
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=45.01 E-value=1.1e+02 Score=29.79 Aligned_cols=61 Identities=15% Similarity=0.161 Sum_probs=42.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH----CCC-CCCHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 004470 678 SYNALIKGFLKRKKYLEARELFEEMRR----GGL-VADREIYYFFVDINFEEGNTEITLELCDAAI 738 (751)
Q Consensus 678 ~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 738 (751)
....++..|.+.|++++|.++|+.+.. .|. .+...+...+..++.+.|+.++.+...-+++
T Consensus 180 l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~leLl 245 (247)
T PF11817_consen 180 LSLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLELL 245 (247)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHh
Confidence 344677778888888888888888753 232 2344556677778888888888877766554
No 428
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=44.98 E-value=2.9e+02 Score=26.80 Aligned_cols=40 Identities=13% Similarity=0.073 Sum_probs=20.6
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 004470 472 LADGLCKSGELETANELLHEMCRKGLQLNIYTYNSIVNGL 511 (751)
Q Consensus 472 li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~~~~li~~~ 511 (751)
++..+-+.|+++++.+.++++...+...+..-.+.|..+|
T Consensus 7 ~Aklaeq~eRy~dmv~~mk~~~~~~~eLt~eERnLlsvay 46 (236)
T PF00244_consen 7 LAKLAEQAERYDDMVEYMKQLIEMNPELTEEERNLLSVAY 46 (236)
T ss_dssp HHHHHHHTTHHHHHHHHHHHHHHTSS---HHHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHH
Confidence 4444555666666666666666665555554444444444
No 429
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=44.15 E-value=2.3e+02 Score=25.02 Aligned_cols=92 Identities=14% Similarity=0.205 Sum_probs=50.3
Q ss_pred HHhcCCCCCHH--HHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-----CCCcccHHHHHHHHHhcCC-HHHHHHHHHHHH
Q 004470 282 MELRGCSPDVV--SFSTIINGYCYLGELQRVLKLIEEMQIKGL-----KPNPYTYNSVVRLLCKTSK-VVEAETILREMM 353 (751)
Q Consensus 282 m~~~g~~p~~~--~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-----~p~~~~~~~li~~~~~~g~-~~~A~~~~~~m~ 353 (751)
|.+.+..++.. ..|+++.-....+++...+.+++.+..... ..+...|..++++.....- ---+..+|.-|.
T Consensus 28 ~~~~~~~~~~k~~fiN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk 107 (145)
T PF13762_consen 28 MQEENASQSTKTIFINCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLK 107 (145)
T ss_pred hhhcccChhHHHHHHHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHH
Confidence 44444444443 245666666666777777777766632210 1244556666666654443 233455566666
Q ss_pred HCCCCCCHHHHHHHHHHHHH
Q 004470 354 NQGIVPDNVIYTTLIDGFCK 373 (751)
Q Consensus 354 ~~g~~p~~~~~~~li~~~~~ 373 (751)
+.+.+++..-|..+|....+
T Consensus 108 ~~~~~~t~~dy~~li~~~l~ 127 (145)
T PF13762_consen 108 KNDIEFTPSDYSCLIKAALR 127 (145)
T ss_pred HcCCCCCHHHHHHHHHHHHc
Confidence 65566666666666665443
No 430
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=43.99 E-value=54 Score=23.89 Aligned_cols=21 Identities=24% Similarity=0.466 Sum_probs=8.8
Q ss_pred HHHHHHHcCCHHHHHHHHHHH
Q 004470 367 LIDGFCKMGNVAAAYRLFDEM 387 (751)
Q Consensus 367 li~~~~~~g~~~~A~~~~~~m 387 (751)
+|.+|...|++++|.+.++++
T Consensus 29 vI~gllqlg~~~~a~eYi~~~ 49 (62)
T PF14689_consen 29 VIYGLLQLGKYEEAKEYIKEL 49 (62)
T ss_dssp HHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHH
Confidence 344444444444444444443
No 431
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=43.94 E-value=1.4e+02 Score=23.92 Aligned_cols=53 Identities=17% Similarity=0.072 Sum_probs=30.7
Q ss_pred HhcCCHHHHHHHHHHHHH----CCCCC----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004470 652 CKARNMKEAWFLHKEMVQ----KGFNL----TTSSYNALIKGFLKRKKYLEARELFEEMRR 704 (751)
Q Consensus 652 ~~~g~~~~A~~~~~~~~~----~~~~p----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 704 (751)
.+.|++.+|.+.+.+..+ .+... -......++......|++++|...++++++
T Consensus 9 ~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~ 69 (94)
T PF12862_consen 9 LRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIR 69 (94)
T ss_pred HHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 456666666554444433 22111 122333455666677888888888888876
No 432
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=43.77 E-value=3.6e+02 Score=27.24 Aligned_cols=17 Identities=35% Similarity=0.610 Sum_probs=8.0
Q ss_pred hcCCHHHHHHHHHHHHH
Q 004470 338 KTSKVVEAETILREMMN 354 (751)
Q Consensus 338 ~~g~~~~A~~~~~~m~~ 354 (751)
+.|+..+|.+.++++.+
T Consensus 287 klGrlrEA~K~~RDL~k 303 (556)
T KOG3807|consen 287 KLGRLREAVKIMRDLMK 303 (556)
T ss_pred HhhhHHHHHHHHHHHhh
Confidence 44444444444444433
No 433
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=43.18 E-value=4.4e+02 Score=28.14 Aligned_cols=87 Identities=8% Similarity=0.038 Sum_probs=42.5
Q ss_pred hCCCCHHHHHHHHHhchhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 004470 232 NTCDGLRMVVKSFTEFPELGICWNTASYNIMIHCLCRFGKIKEAHLLLLQMELRGCSPDVVSFSTIINGYCYLGELQRVL 311 (751)
Q Consensus 232 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~ 311 (751)
...|+++.+.+....+... +.....+...+++...+.|++++|..+-+-|....+. +...........-..|-+|++.
T Consensus 334 ~~lg~ye~~~~~~s~~~~~-~~s~~~~~~~~~r~~~~l~r~~~a~s~a~~~l~~eie-~~ei~~iaa~sa~~l~~~d~~~ 411 (831)
T PRK15180 334 SHLGYYEQAYQDISDVEKI-IGTTDSTLRCRLRSLHGLARWREALSTAEMMLSNEIE-DEEVLTVAAGSADALQLFDKSY 411 (831)
T ss_pred HHhhhHHHHHHHhhchhhh-hcCCchHHHHHHHhhhchhhHHHHHHHHHHHhccccC-ChhheeeecccHHHHhHHHHHH
Confidence 3446666666555444322 1223345555666666666666666666666554442 2222222222223345556666
Q ss_pred HHHHHHHHC
Q 004470 312 KLIEEMQIK 320 (751)
Q Consensus 312 ~~~~~m~~~ 320 (751)
-.+.++...
T Consensus 412 ~~wk~~~~~ 420 (831)
T PRK15180 412 HYWKRVLLL 420 (831)
T ss_pred HHHHHHhcc
Confidence 666555544
No 434
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=43.01 E-value=49 Score=35.02 Aligned_cols=105 Identities=12% Similarity=0.062 Sum_probs=62.5
Q ss_pred HHHHhcCChhHHHHHHHHHHhCCCccCHHhHHHHHHHHHhCCCCHHHHHHHHHhchhcCCCcCHHHHHHHHHHHHhcCCH
Q 004470 193 QVLVEARKLNEARKLFEKLLNYGLVISVDSCNLFLSRLSNTCDGLRMVVKSFTEFPELGICWNTASYNIMIHCLCRFGKI 272 (751)
Q Consensus 193 ~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 272 (751)
......+.++.|..++.++++. .|+...+-..=+..+.+.+++..|+.=+.++++..+. -.-.|-.=..++.+.+++
T Consensus 12 n~~l~~~~fd~avdlysKaI~l--dpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~-~~K~Y~rrg~a~m~l~~~ 88 (476)
T KOG0376|consen 12 NEALKDKVFDVAVDLYSKAIEL--DPNCAIYFANRALAHLKVESFGGALHDALKAIELDPT-YIKAYVRRGTAVMALGEF 88 (476)
T ss_pred hhhcccchHHHHHHHHHHHHhc--CCcceeeechhhhhheeechhhhHHHHHHhhhhcCch-hhheeeeccHHHHhHHHH
Confidence 3456677888888999988887 5655443222222223567888888888888877533 222233333444555666
Q ss_pred HHHHHHHHHHHhcCCCCCHHHHHHHHHHHH
Q 004470 273 KEAHLLLLQMELRGCSPDVVSFSTIINGYC 302 (751)
Q Consensus 273 ~~A~~~~~~m~~~g~~p~~~~~~~li~~~~ 302 (751)
.+|+..|+.... +.|+..-....+.-|-
T Consensus 89 ~~A~~~l~~~~~--l~Pnd~~~~r~~~Ec~ 116 (476)
T KOG0376|consen 89 KKALLDLEKVKK--LAPNDPDATRKIDECN 116 (476)
T ss_pred HHHHHHHHHhhh--cCcCcHHHHHHHHHHH
Confidence 666666666544 3466666655555443
No 435
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=42.31 E-value=61 Score=32.27 Aligned_cols=35 Identities=20% Similarity=0.253 Sum_probs=22.1
Q ss_pred CCHHH-HHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 004470 639 PDGNT-YNILLQGHCKARNMKEAWFLHKEMVQKGFN 673 (751)
Q Consensus 639 p~~~~-~~~li~~~~~~g~~~~A~~~~~~~~~~~~~ 673 (751)
||..+ |+..|..-.+.||+++|+++++++.+.|..
T Consensus 254 ~dTe~Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~ 289 (303)
T PRK10564 254 NDTESYFNQAIKQAVKKGDVDKALKLLDEAERLGST 289 (303)
T ss_pred chHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc
Confidence 44433 456666666677777777777777666655
No 436
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=42.28 E-value=2.7e+02 Score=25.63 Aligned_cols=47 Identities=13% Similarity=0.159 Sum_probs=33.6
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhCCCccCHHhHHHHHHHHHhCCCCHH
Q 004470 189 DIFFQVLVEARKLNEARKLFEKLLNYGLVISVDSCNLFLSRLSNTCDGLR 238 (751)
Q Consensus 189 ~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~l~~~~~~~~ 238 (751)
-..+-+|.+.|.+++|.+++++... .|+......-|..+.+..+.+.
T Consensus 115 ~~aV~VCm~~g~Fk~A~eiLkr~~~---d~~~~~~r~kL~~II~~Kd~~h 161 (200)
T cd00280 115 EQAVAVCMENGEFKKAEEVLKRLFS---DPESQKLRMKLLMIIREKDPAH 161 (200)
T ss_pred HHHHHHHHhcCchHHHHHHHHHHhc---CCCchhHHHHHHHHHHcccccc
Confidence 3457789999999999999999987 4666655666666654433333
No 437
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=41.81 E-value=2.2e+02 Score=24.13 Aligned_cols=87 Identities=16% Similarity=0.077 Sum_probs=49.0
Q ss_pred hcCCHHHHHHHHHHHHH--CCCCC---------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH----CC-CCCCH-HHHH
Q 004470 653 KARNMKEAWFLHKEMVQ--KGFNL---------TTSSYNALIKGFLKRKKYLEARELFEEMRR----GG-LVADR-EIYY 715 (751)
Q Consensus 653 ~~g~~~~A~~~~~~~~~--~~~~p---------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~-~~~~~-~~~~ 715 (751)
..|-+++|..-++++.+ ..++| |...+..|..++...|++++++.-.+..+. .| +..|. ..|-
T Consensus 21 ~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL~qdeGklWI 100 (144)
T PF12968_consen 21 QDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRYFNRRGELHQDEGKLWI 100 (144)
T ss_dssp HHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--TTSTHHHHHH
T ss_pred HhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhccccccccchhHH
Confidence 34556666655555443 12222 344566777778888888887776666553 22 23333 2232
Q ss_pred ----HHHHHHHhcCChhHHHHHHHHHHH
Q 004470 716 ----FFVDINFEEGNTEITLELCDAAIE 739 (751)
Q Consensus 716 ----~l~~~~~~~g~~~~A~~~~~~~~~ 739 (751)
.-+.++...|+.++|.+.|+.+.+
T Consensus 101 aaVfsra~Al~~~Gr~~eA~~~fr~agE 128 (144)
T PF12968_consen 101 AAVFSRAVALEGLGRKEEALKEFRMAGE 128 (144)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHH
Confidence 223467888999999999887643
No 438
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=41.46 E-value=61 Score=20.57 Aligned_cols=23 Identities=9% Similarity=0.215 Sum_probs=17.4
Q ss_pred HHHHHHHHHHhcCChhHHHHHHH
Q 004470 713 IYYFFVDINFEEGNTEITLELCD 735 (751)
Q Consensus 713 ~~~~l~~~~~~~g~~~~A~~~~~ 735 (751)
.+..++..+...|++++|+++++
T Consensus 3 ~~y~~a~~~y~~~ky~~A~~~~~ 25 (36)
T PF07720_consen 3 YLYGLAYNFYQKGKYDEAIHFFQ 25 (36)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHH
Confidence 45567778899999999999954
No 439
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=41.27 E-value=5.2e+02 Score=29.43 Aligned_cols=18 Identities=6% Similarity=0.076 Sum_probs=10.2
Q ss_pred HhcCCHHHHHHHHHHHHH
Q 004470 407 CLTGKMVEAEKLFHEMLG 424 (751)
Q Consensus 407 ~~~g~~~~A~~~~~~m~~ 424 (751)
...+..+.|.++|++.-+
T Consensus 298 tDa~s~~~a~~WyrkaFe 315 (1226)
T KOG4279|consen 298 TDAESLNHAIEWYRKAFE 315 (1226)
T ss_pred cchhhHHHHHHHHHHHhc
Confidence 334455666666666554
No 440
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=40.37 E-value=4.2e+02 Score=27.09 Aligned_cols=117 Identities=10% Similarity=0.027 Sum_probs=54.8
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh---cCChhHHHHHHH
Q 004470 519 QAVKLMEDMEVAGFHPDTFTYTTIMDAYCKSGEMVKAHELLRDMLDKGLQPSVVTFNVLMNGFCM---SGMIEDGEKLLK 595 (751)
Q Consensus 519 ~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~---~g~~~~A~~l~~ 595 (751)
.-+.+++++.+.+ +.+......++..+.+..+.++..+.++++.... +-+...|...++.... .-.+++...+|.
T Consensus 49 ~klsilerAL~~n-p~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~-~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~ 126 (321)
T PF08424_consen 49 RKLSILERALKHN-PDSERLLLGYLEEGEKVWDSEKLAKKWEELLFKN-PGSPELWREYLDFRQSNFASFTVSDVRDVYE 126 (321)
T ss_pred HHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHHhccCcHHHHHHHHH
Confidence 3344455544443 3444444455555555555555555555555442 2244455554443332 123344444443
Q ss_pred HHHHc------CC------CCC-----HhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCC
Q 004470 596 WMLEK------GL------KPN-----AATYNPLIKQHCLRNDMRTTAKIYKGMCAQGI 637 (751)
Q Consensus 596 ~~~~~------g~------~p~-----~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~ 637 (751)
+.+.. +. .++ ..++..+...+...|-.+.|..+++-+++.++
T Consensus 127 ~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~~aG~~E~Ava~~Qa~lE~n~ 185 (321)
T PF08424_consen 127 KCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLRQAGYTERAVALWQALLEFNF 185 (321)
T ss_pred HHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHCCchHHHHHHHHHHHHHHc
Confidence 33321 10 000 01222233334567778888888887777543
No 441
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=39.87 E-value=1.7e+02 Score=26.87 Aligned_cols=22 Identities=18% Similarity=0.190 Sum_probs=15.4
Q ss_pred HHHHHhcCCHHHHHHHHHHHHh
Q 004470 263 IHCLCRFGKIKEAHLLLLQMEL 284 (751)
Q Consensus 263 i~~~~~~g~~~~A~~~~~~m~~ 284 (751)
+..|.+.|.+++|.++|++...
T Consensus 118 V~VCm~~g~Fk~A~eiLkr~~~ 139 (200)
T cd00280 118 VAVCMENGEFKKAEEVLKRLFS 139 (200)
T ss_pred HHHHHhcCchHHHHHHHHHHhc
Confidence 4466777777777777777665
No 442
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=39.69 E-value=1.1e+02 Score=20.89 Aligned_cols=32 Identities=25% Similarity=0.240 Sum_probs=19.6
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHH
Q 004470 267 CRFGKIKEAHLLLLQMELRGCSPDVVSFSTII 298 (751)
Q Consensus 267 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li 298 (751)
.+.|-..++..++++|.+.|+..+...|..++
T Consensus 13 k~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L 44 (48)
T PF11848_consen 13 KRRGLISEVKPLLDRLQQAGFRISPKLIEEIL 44 (48)
T ss_pred HHcCChhhHHHHHHHHHHcCcccCHHHHHHHH
Confidence 35566666666666666666666665555544
No 443
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=38.76 E-value=4.3e+02 Score=26.71 Aligned_cols=49 Identities=14% Similarity=0.114 Sum_probs=23.4
Q ss_pred HHcCCHHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 004470 617 CLRNDMRTTAKIYKGMCAQGITPD---GNTYNILLQGHCKARNMKEAWFLHKEM 667 (751)
Q Consensus 617 ~~~g~~~~A~~~~~~m~~~g~~p~---~~~~~~li~~~~~~g~~~~A~~~~~~~ 667 (751)
.+.|+..+|.+.++++.+. .|- ......|+.++....-+.+...++-+.
T Consensus 286 RklGrlrEA~K~~RDL~ke--~pl~t~lniheNLiEalLE~QAYADvqavLakY 337 (556)
T KOG3807|consen 286 RKLGRLREAVKIMRDLMKE--FPLLTMLNIHENLLEALLELQAYADVQAVLAKY 337 (556)
T ss_pred HHhhhHHHHHHHHHHHhhh--ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4556666666666665542 121 112334455555544444444444433
No 444
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=38.69 E-value=1.6e+02 Score=24.86 Aligned_cols=29 Identities=14% Similarity=0.134 Sum_probs=22.2
Q ss_pred ChhhHHHHHHHHHhcCChhHHHHHHHHHH
Q 004470 184 DPHVFDIFFQVLVEARKLNEARKLFEKLL 212 (751)
Q Consensus 184 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 212 (751)
+..++-.|..++...|++++++.--+..+
T Consensus 54 DA~chA~Ls~A~~~Lgry~e~L~sA~~aL 82 (144)
T PF12968_consen 54 DAFCHAGLSGALAGLGRYDECLQSADRAL 82 (144)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhccHHHHHHHHHHHH
Confidence 44567789999999999999887666654
No 445
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=37.14 E-value=2.4e+02 Score=23.35 Aligned_cols=26 Identities=15% Similarity=0.355 Sum_probs=17.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004470 294 FSTIINGYCYLGELQRVLKLIEEMQI 319 (751)
Q Consensus 294 ~~~li~~~~~~g~~~~A~~~~~~m~~ 319 (751)
|..|+..|...|..++|++++.+...
T Consensus 42 ~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 42 YQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred HHHHHHHHHccCccHHHHHHHHHHhc
Confidence 56666666666666677666666655
No 446
>PF06957 COPI_C: Coatomer (COPI) alpha subunit C-terminus; InterPro: IPR010714 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the C terminus (approximately 500 residues) of the eukaryotic coatomer alpha subunit [, ]. This domain is found along with the IPR006692 from INTERPRO domain. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0005515 protein binding, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030126 COPI vesicle coat; PDB: 3MKR_B 3MV2_E 3MKQ_B 3MV3_A.
Probab=37.02 E-value=4.5e+02 Score=28.02 Aligned_cols=36 Identities=17% Similarity=0.060 Sum_probs=21.8
Q ss_pred HHHHHHhcCChHHHHHHHHHHHcCCCCCchhhhHHHHHH
Q 004470 135 VVQISVAAKDLKTAHGLIHDFWAKPNLDASIAFTHFVER 173 (751)
Q Consensus 135 ~~~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~ 173 (751)
++.-++.+|.|+.|.++|++=+... .-.|+...|-.
T Consensus 124 laadhvAAGsFetAm~LLnrQiGiv---nF~PLk~~Fl~ 159 (422)
T PF06957_consen 124 LAADHVAAGSFETAMQLLNRQIGIV---NFEPLKPLFLE 159 (422)
T ss_dssp SHHHHHHCT-HHHHHHHHHHHC-B------GGGHHHHHH
T ss_pred cHHHHHHhCCHHHHHHHHHHHhCcc---ccHHHHHHHHH
Confidence 4566778999999999999865432 22445444433
No 447
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=37.02 E-value=79 Score=18.50 Aligned_cols=13 Identities=8% Similarity=0.171 Sum_probs=5.3
Q ss_pred HHHHHHHHHHHHH
Q 004470 657 MKEAWFLHKEMVQ 669 (751)
Q Consensus 657 ~~~A~~~~~~~~~ 669 (751)
.+.|..+|++++.
T Consensus 3 ~~~~r~i~e~~l~ 15 (33)
T smart00386 3 IERARKIYERALE 15 (33)
T ss_pred HHHHHHHHHHHHH
Confidence 3344444444443
No 448
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=36.99 E-value=1.3e+02 Score=20.53 Aligned_cols=31 Identities=13% Similarity=0.273 Sum_probs=16.4
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 004470 408 LTGKMVEAEKLFHEMLGRGLEPDEIVYTALI 438 (751)
Q Consensus 408 ~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li 438 (751)
+.|-..++..++++|.+.|+..+...+..++
T Consensus 14 ~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L 44 (48)
T PF11848_consen 14 RRGLISEVKPLLDRLQQAGFRISPKLIEEIL 44 (48)
T ss_pred HcCChhhHHHHHHHHHHcCcccCHHHHHHHH
Confidence 4455555555555555555555555544443
No 449
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=36.89 E-value=39 Score=35.68 Aligned_cols=98 Identities=8% Similarity=0.038 Sum_probs=70.7
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHCCCCCCHHH-HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 004470 613 IKQHCLRNDMRTTAKIYKGMCAQGITPDGNT-YNILLQGHCKARNMKEAWFLHKEMVQKGFNLTTSSYNALIKGFLKRKK 691 (751)
Q Consensus 613 ~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~-~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 691 (751)
+..+...++++.|..++.++++. .||-.. |..-..++.+.+++..|+.=+.++++..+. -...|..-+.++.+.+.
T Consensus 11 an~~l~~~~fd~avdlysKaI~l--dpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~-~~K~Y~rrg~a~m~l~~ 87 (476)
T KOG0376|consen 11 ANEALKDKVFDVAVDLYSKAIEL--DPNCAIYFANRALAHLKVESFGGALHDALKAIELDPT-YIKAYVRRGTAVMALGE 87 (476)
T ss_pred HhhhcccchHHHHHHHHHHHHhc--CCcceeeechhhhhheeechhhhHHHHHHhhhhcCch-hhheeeeccHHHHhHHH
Confidence 44556788999999999999984 576444 444457888999999999988888887533 23344445566667788
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHH
Q 004470 692 YLEARELFEEMRRGGLVADREIYY 715 (751)
Q Consensus 692 ~~~A~~~~~~~~~~~~~~~~~~~~ 715 (751)
+.+|+..|+..... .|+..-..
T Consensus 88 ~~~A~~~l~~~~~l--~Pnd~~~~ 109 (476)
T KOG0376|consen 88 FKKALLDLEKVKKL--APNDPDAT 109 (476)
T ss_pred HHHHHHHHHHhhhc--CcCcHHHH
Confidence 88888888888763 55554433
No 450
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=36.73 E-value=35 Score=29.28 Aligned_cols=31 Identities=23% Similarity=0.492 Sum_probs=18.6
Q ss_pred hcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHH
Q 004470 268 RFGKIKEAHLLLLQMELRGCSPDVVSFSTIING 300 (751)
Q Consensus 268 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~ 300 (751)
+.|.-.+|..+|+.|++.|-+|| .|+.|+..
T Consensus 107 ~ygsk~DaY~VF~kML~~G~pPd--dW~~Ll~~ 137 (140)
T PF11663_consen 107 AYGSKTDAYAVFRKMLERGNPPD--DWDALLKE 137 (140)
T ss_pred hhccCCcHHHHHHHHHhCCCCCc--cHHHHHHH
Confidence 34555566677777777776666 35555543
No 451
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=36.39 E-value=1.6e+02 Score=27.38 Aligned_cols=33 Identities=18% Similarity=0.096 Sum_probs=20.1
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 004470 638 TPDGNTYNILLQGHCKARNMKEAWFLHKEMVQK 670 (751)
Q Consensus 638 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 670 (751)
.|++.+|..++..+...|+.++|.+..+++...
T Consensus 141 ~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~l 173 (193)
T PF11846_consen 141 RPDPNVYQRYALALALLGDPEEARQWLARARRL 173 (193)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 456666666666666666666666666665543
No 452
>COG2178 Predicted RNA-binding protein of the translin family [Translation, ribosomal structure and biogenesis]
Probab=35.85 E-value=3.6e+02 Score=25.03 Aligned_cols=18 Identities=22% Similarity=0.486 Sum_probs=14.3
Q ss_pred HhcCCHHHHHHHHHHHHH
Q 004470 687 LKRKKYLEARELFEEMRR 704 (751)
Q Consensus 687 ~~~g~~~~A~~~~~~~~~ 704 (751)
.+.|+++.|.++++-|.+
T Consensus 132 l~~~~~~~Ae~~~~~ME~ 149 (204)
T COG2178 132 LRKGSFEEAERFLKFMEK 149 (204)
T ss_pred HHhccHHHHHHHHHHHHH
Confidence 467899999988887765
No 453
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=34.93 E-value=1.9e+02 Score=30.51 Aligned_cols=98 Identities=15% Similarity=0.119 Sum_probs=58.9
Q ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHH-------CCCCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC--C-
Q 004470 607 ATYNPLIKQHCLRNDMRTTAKIYKGMCA-------QGITPD-----GNTYNILLQGHCKARNMKEAWFLHKEMVQK--G- 671 (751)
Q Consensus 607 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~-------~g~~p~-----~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--~- 671 (751)
..-..++..+....++.+..+..+.... .|..|- -.+...|++.++-.||+..|++.++.+.-. +
T Consensus 76 ~~VLnvL~sLv~kS~I~e~l~~~~~~~~~~~~~~~~g~~~l~~~LGYFSligLlRvh~LLGDY~~Alk~l~~idl~~~~l 155 (404)
T PF10255_consen 76 YSVLNVLYSLVDKSQINEQLEAEKRGEDPDEVAGEYGSSPLYKMLGYFSLIGLLRVHCLLGDYYQALKVLENIDLNKKGL 155 (404)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHhhccCCchhhhcccccccHHHHhhHHHHHHHHHHHHhccCHHHHHHHhhccCcccchh
Confidence 3334455666677777666665554211 111111 123345667778888888888887765321 1
Q ss_pred ----CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004470 672 ----FNLTTSSYNALIKGFLKRKKYLEARELFEEMRR 704 (751)
Q Consensus 672 ----~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 704 (751)
+.-...++-.++-+|...+++.+|.+.|...+-
T Consensus 156 ~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL~ 192 (404)
T PF10255_consen 156 YTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQILL 192 (404)
T ss_pred hccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111234666777788888888888888888764
No 454
>KOG2297 consensus Predicted translation factor, contains W2 domain [Translation, ribosomal structure and biogenesis]
Probab=34.49 E-value=4.9e+02 Score=26.13 Aligned_cols=18 Identities=22% Similarity=0.575 Sum_probs=10.9
Q ss_pred hHHHHHHHHHHcCCHHHH
Q 004470 608 TYNPLIKQHCLRNDMRTT 625 (751)
Q Consensus 608 ~~~~l~~~~~~~g~~~~A 625 (751)
+|..|+.++|..|+.+-.
T Consensus 323 ~yaPLL~af~s~g~sEL~ 340 (412)
T KOG2297|consen 323 QYAPLLAAFCSQGQSELE 340 (412)
T ss_pred hhhHHHHHHhcCChHHHH
Confidence 466666666666665543
No 455
>KOG2005 consensus 26S proteasome regulatory complex, subunit RPN1/PSMD2 [Posttranslational modification, protein turnover, chaperones]
Probab=34.29 E-value=7.2e+02 Score=28.01 Aligned_cols=79 Identities=15% Similarity=0.079 Sum_probs=42.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCc-ccHHHHHHHHH
Q 004470 259 YNIMIHCLCRFGKIKEAHLLLLQMELRGCSPDVVSFSTIINGYCYLGELQRVLKLIEEMQIKGLKPNP-YTYNSVVRLLC 337 (751)
Q Consensus 259 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~~~~~li~~~~ 337 (751)
...++..+.+.+--.+|.+++-+...-. ++--|....++.+....+..+...=..||. .........|.
T Consensus 181 ~~~iV~f~mkHNAE~eAiDlL~Eve~id----------~l~~~Vd~~n~~RvclYl~sc~~~lP~Pdd~~ll~~a~~IYl 250 (878)
T KOG2005|consen 181 VQEIVPFHMKHNAEFEAIDLLMEVEGID----------LLLDYVDEHNYQRVCLYLTSCVPLLPGPDDVALLRTALKIYL 250 (878)
T ss_pred HHHHHHHHHhccchhHHHHHHHHhhhHh----------HHHHHhhhhhHHHHHHHHHHHhhcCCCchhhHHHHHHHHHHH
Confidence 3345566777777778888887665421 222345555666666666666554333332 23334444555
Q ss_pred hcCCHHHHHH
Q 004470 338 KTSKVVEAET 347 (751)
Q Consensus 338 ~~g~~~~A~~ 347 (751)
+.+++.+|..
T Consensus 251 Kf~~~~~al~ 260 (878)
T KOG2005|consen 251 KFNEYPRALV 260 (878)
T ss_pred HHHHhHHHHH
Confidence 5555544443
No 456
>KOG0403 consensus Neoplastic transformation suppressor Pdcd4/MA-3, contains MA3 domain [Signal transduction mechanisms]
Probab=33.56 E-value=6.1e+02 Score=26.96 Aligned_cols=464 Identities=12% Similarity=0.076 Sum_probs=0.0
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhc
Q 004470 260 NIMIHCLCRFGKIKEAHLLLLQMELRGCSPDVVSFSTIINGYCYLGELQRVLKLIEEMQIKGLKPNPYTYNSVVRLLCKT 339 (751)
Q Consensus 260 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~ 339 (751)
..+|+-|...|++.-|..-+.++-.....|--+---.-+..=.....-+.|--++..+-..-+.|+ ..+...++.+...
T Consensus 54 ~sii~eyfstgdv~vaa~dl~elg~seyhpyfvkrlvsmamdrhdkekemasvlls~lyadvi~p~-qir~gf~~ll~s~ 132 (645)
T KOG0403|consen 54 VSIIDEYFSTGDVVVAASDLKELGSSEYHPYFVKRLVSMAMDRHDKEKEMASVLLSALYADVIDPD-QIRDGFIRLLESA 132 (645)
T ss_pred HHHHHHHccCCCchhhHHHHHHhccccccHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHhcChH-HHHHHHHHHHHhc
Q ss_pred CC----HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHH-----------------
Q 004470 340 SK----VVEAETILREMMNQGIVPDNVIYTTLIDGFCKMGNVAAAYRLFDEMRGLNIIPDLLT----------------- 398 (751)
Q Consensus 340 g~----~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~----------------- 398 (751)
++ +..|..++.-.+.+.+..+...=.-|...---.-+-.+..++.......-...+...
T Consensus 133 ddl~vdipdavnvlalfiaraivddilpp~fl~r~~k~lp~~skg~qV~~~aeksylsap~hae~ve~~wGg~~n~t~EE 212 (645)
T KOG0403|consen 133 DDLAVDIPDAVNVLALFIARAIVDDILPPAFLKRAKKLLPDSSKGFQVINTAEKSYLSAPHHAELVELFWGGETNATVEE 212 (645)
T ss_pred ccceecCchHHHHHHHHHHHHHHHhccChHHHHHHHhhCCCcccchhHHHHHHhhccCCCchhhHHHhhhCCCccccHHH
Q ss_pred ----HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 004470 399 ----YTAIICGFCLTGKMVEAEKLFHEMLGRGLEPDEIVYTALIDGYCKAGGMKKAFSLHNNMVHMRLTPNVVTYTALAD 474 (751)
Q Consensus 399 ----~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~ 474 (751)
.+-++..|...|+..+|.+..+++ ..+...-...-++....+.-..|..+.-...+.+...+...-+.+..
T Consensus 213 vK~kIn~~l~eyv~~getrea~rciR~L-----~vsffhhe~vkralv~ame~~~ae~l~l~llke~~e~glissSq~~k 287 (645)
T KOG0403|consen 213 VKNKINGNLIEYVEIGETREACRCIREL-----GVSFFHHEGVKRALVDAMEDALAEGLTLKLLKEGREEGLISSSQMGK 287 (645)
T ss_pred HHHHHHHHHHHHHHcccHHHHHHHHHHh-----CCCchhhHHHHHHHHHHHhhhhcccceeccchhhhhhcchhhhcccc
Q ss_pred HHHhcCC--------HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 004470 475 GLCKSGE--------LETANELLHEMCRKGLQLNIYTYNSIVNGLCKAGNILQAVKLMEDMEVAGFHPDTFTYTTIMDAY 546 (751)
Q Consensus 475 ~~~~~g~--------~~~A~~l~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~ 546 (751)
++.+.+. ...|...|+.+.-+.+.-+-..-+++-..-...|+.+....+-+.+. .+|+-|
T Consensus 288 Gfsr~~~slddl~ldiP~a~~~~esiv~Ka~s~gwl~e~s~k~~s~~~g~~e~~r~Fkk~~~------------~IIqEY 355 (645)
T KOG0403|consen 288 GFSRKGGSLDDLVLDIPSARYDFESIVPKAPSGGWLDENSFKETSVLPGDSENLRAFKKDLT------------PIIQEY 355 (645)
T ss_pred CchhhccccccccccCcchhhhhhhhcccCCCCCccchhhhcccccCCCcchHHHHHHHhhH------------HHHHHH
Q ss_pred HHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHHcC----CH
Q 004470 547 CKSGEMVKAHELLRDMLDKGLQPSVVTFNVLMNGFCMSGMIEDGEKLLKWMLEKGLKPNAATYNPLIKQHCLRN----DM 622 (751)
Q Consensus 547 ~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~g~~p~~~~~~~l~~~~~~~g----~~ 622 (751)
...|+..+..+.++++-.....|-..-+..-+..=.+...-+.|..++..+.-. +-+....-+.+...+-... +.
T Consensus 356 FlsgDt~Evi~~L~DLn~~E~~~~f~k~lITLAldrK~~ekEMasvllS~L~~e-~fsteDv~~~F~mLLesaedtALD~ 434 (645)
T KOG0403|consen 356 FLSGDTPEVIRSLRDLNLPEYNPGFLKLLITLALDRKNSEKEMASVLLSDLHGE-VFSTEDVEKGFDMLLESAEDTALDI 434 (645)
T ss_pred HhcCChHHHHHHHHHcCCccccchHHHHHHHHHhccchhHHHHHHHHHHHhhcc-cCCHHHHHHHHHHHHhcchhhhccc
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH---------------------CCCCCCHHHHHH
Q 004470 623 RTTAKIYKGMCAQGITPDGNTYNILLQGHCKARNMKEAWFLHKEMVQ---------------------KGFNLTTSSYNA 681 (751)
Q Consensus 623 ~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---------------------~~~~p~~~~~~~ 681 (751)
..|-+.+-..+..-+..++..-..+=....+..-...+.+.++.+.. ..+..-..-...
T Consensus 435 p~a~~elalFlARAViDdVLap~~leei~~~lp~~s~g~et~~~ArsLlsar~aGeRllr~WGgGG~g~sVed~kdkI~~ 514 (645)
T KOG0403|consen 435 PRASQELALFLARAVIDDVLAPTNLEEISGTLPPVSQGRETLDKARSLLSARHAGERLLRVWGGGGGGWSVEDAKDKIDM 514 (645)
T ss_pred cccHHHHHHHHHHHHhhcccccCcHHHHcCCCCCchhhHHHHHHHHHHHHHhhcccchhheecCCCCcchHHHHHHHHHH
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCC
Q 004470 682 LIKGFLKRKKYLEARELFEEMRRGGLVADREIYYFFVDINFEEGNTEITLELCDAAIECYLV 743 (751)
Q Consensus 682 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 743 (751)
|+.-|...|+..||...+++ +...+.....++..++.+.-+.|+-..-..++++....|++
T Consensus 515 LLeEY~~~GdisEA~~Cike-LgmPfFhHEvVkkAlVm~mEkk~d~t~~ldLLk~cf~sglI 575 (645)
T KOG0403|consen 515 LLEEYELSGDISEACHCIKE-LGMPFFHHEVVKKALVMVMEKKGDSTMILDLLKECFKSGLI 575 (645)
T ss_pred HHHHHHhccchHHHHHHHHH-hCCCcchHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCce
No 457
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=33.28 E-value=9.3e+02 Score=29.01 Aligned_cols=23 Identities=26% Similarity=0.213 Sum_probs=17.3
Q ss_pred HHHHHHHHhcCChhHHHHHHHHH
Q 004470 189 DIFFQVLVEARKLNEARKLFEKL 211 (751)
Q Consensus 189 ~~l~~~~~~~g~~~~A~~~~~~~ 211 (751)
...++-+...+++.+|..+.++=
T Consensus 698 L~~ir~~Ld~~~Y~~Af~~~Rkh 720 (928)
T PF04762_consen 698 LAGIRKLLDAKDYKEAFELCRKH 720 (928)
T ss_pred HHHHHHHHhhccHHHHHHHHHHh
Confidence 34567778899999998776654
No 458
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=33.06 E-value=1.3e+03 Score=30.63 Aligned_cols=324 Identities=11% Similarity=0.055 Sum_probs=164.6
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHcCCCCCchhhhHHHHHHHHHhhhcCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHh
Q 004470 134 IVVQISVAAKDLKTAHGLIHDFWAKPNLDASIAFTHFVERLIYTYKDWGSDPHVFDIFFQVLVEARKLNEARKLFEKLLN 213 (751)
Q Consensus 134 ~~~~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 213 (751)
.++....+.+.+..|...+++.-... .. .. .....+..|-..|..-+++|....+...-..
T Consensus 1388 tLa~aSfrc~~y~RalmylEs~~~~e---k~---~~-------------~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a 1448 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESHRSTE---KE---KE-------------TEEALYFLLQNLYGSIHDPDGVEGVSARRFA 1448 (2382)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhcccc---ch---hH-------------HHHHHHHHHHHHHHhcCCcchhhhHHHHhhc
Confidence 55666667777777777777741111 00 00 0112345555688999998888877774222
Q ss_pred CCCccCHHhHHHHHHHHHhCCCCHHHHHHHHHhchhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHH
Q 004470 214 YGLVISVDSCNLFLSRLSNTCDGLRMVVKSFTEFPELGICWNTASYNIMIHCLCRFGKIKEAHLLLLQMELRGCSPDVVS 293 (751)
Q Consensus 214 ~g~~p~~~~~~~ll~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~ 293 (751)
.|+. ...++..- ..|++..|..-|+.+...++. ....++-++......|.+...+...+-...+ ..+....
T Consensus 1449 ---~~sl--~~qil~~e--~~g~~~da~~Cye~~~q~~p~-~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~-~se~~~~ 1519 (2382)
T KOG0890|consen 1449 ---DPSL--YQQILEHE--ASGNWADAAACYERLIQKDPD-KEKHHSGVLKSMLAIQHLSTEILHLDGLIIN-RSEEVDE 1519 (2382)
T ss_pred ---CccH--HHHHHHHH--hhccHHHHHHHHHHhhcCCCc-cccchhhHHHhhhcccchhHHHhhhcchhhc-cCHHHHH
Confidence 3443 23333332 468999999999999988654 5777888888888888888888766655443 2233333
Q ss_pred HHHH-HHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHH--HHHHHhcCCHHH--HHHHHHHHHHC--------CCCC-
Q 004470 294 FSTI-INGYCYLGELQRVLKLIEEMQIKGLKPNPYTYNSV--VRLLCKTSKVVE--AETILREMMNQ--------GIVP- 359 (751)
Q Consensus 294 ~~~l-i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l--i~~~~~~g~~~~--A~~~~~~m~~~--------g~~p- 359 (751)
|+++ +.+--+.+++|.....+. .. +..+|... +..+.+..+-|. -...++.+.+. +..-
T Consensus 1520 ~~s~~~eaaW~l~qwD~~e~~l~---~~----n~e~w~~~~~g~~ll~~~~kD~~~~~~~i~~~r~~~i~~lsa~s~~~S 1592 (2382)
T KOG0890|consen 1520 LNSLGVEAAWRLSQWDLLESYLS---DR----NIEYWSVESIGKLLLRNKKKDEIATLDLIENSRELVIENLSACSIEGS 1592 (2382)
T ss_pred HHHHHHHHHhhhcchhhhhhhhh---cc----cccchhHHHHHHHHHhhcccchhhHHHHHHHHHHHhhhhHHHhhccch
Confidence 4433 233356777776666555 11 33333332 333332222111 11122222211 1111
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHh-CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH-HHHC----CCCC-CHH
Q 004470 360 DNVIYTTLIDGFCKMGNVAAAYRLFDEMRG-LNIIPDLLTYTAIICGFCLTGKMVEAEKLFHE-MLGR----GLEP-DEI 432 (751)
Q Consensus 360 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~-m~~~----~~~p-~~~ 432 (751)
-...|..++....-.. .+.-.+.+..... ....-+...|..-+..-....+..+-+-.+++ +... +... -..
T Consensus 1593 y~~~Y~~~~kLH~l~e-l~~~~~~l~~~s~~~~s~~~sd~W~~Rl~~tq~s~~~~epILa~RRs~l~~~~~~~~~~~~ge 1671 (2382)
T KOG0890|consen 1593 YVRSYEILMKLHLLLE-LENSIEELKKVSYDEDSANNSDNWKNRLERTQPSFRIKEPILAFRRSMLDLRMRSNLKSRLGE 1671 (2382)
T ss_pred HHHHHHHHHHHHHHHH-HHHHHHHhhccCccccccccchhHHHHHHHhchhHHHHhHHHHHHHHHHHHhccccccchhHH
Confidence 1123444443322111 1111111111100 00000111122221111111112222212221 2211 1111 245
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 004470 433 VYTALIDGYCKAGGMKKAFSLHNNMVHMRLTPNVVTYTALADGLCKSGELETANELLHEMCRKG 496 (751)
Q Consensus 433 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g 496 (751)
+|-...+...+.|+++.|...+-...+.+ -+..+--.+..+-..|+...|+.++++..+..
T Consensus 1672 ~wLqsAriaR~aG~~q~A~nall~A~e~r---~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~ 1732 (2382)
T KOG0890|consen 1672 CWLQSARIARLAGHLQRAQNALLNAKESR---LPEIVLERAKLLWQTGDELNALSVLQEILSKN 1732 (2382)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHhhhhcc---cchHHHHHHHHHHhhccHHHHHHHHHHHHHhh
Confidence 77778888888999999988877777665 23455566777888999999999999888653
No 459
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=33.04 E-value=3.6e+02 Score=27.48 Aligned_cols=96 Identities=14% Similarity=0.027 Sum_probs=66.6
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHcCC---CCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HHHHHH
Q 004470 571 VVTFNVLMNGFCMSGMIEDGEKLLKWMLEKGL---KPNAATYNPLIKQHCLRNDMRTTAKIYKGMCAQGITPD-GNTYNI 646 (751)
Q Consensus 571 ~~~~~~li~~~~~~g~~~~A~~l~~~~~~~g~---~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~ 646 (751)
...|.-=.+-|.+..++..|...|.+-+.... ..+.+.|+.-..+-...|++..|+.--...+.. .|+ ...|-.
T Consensus 81 Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~--~P~h~Ka~~R 158 (390)
T KOG0551|consen 81 AENYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKL--KPTHLKAYIR 158 (390)
T ss_pred HHHHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhc--Ccchhhhhhh
Confidence 34566667778888899999999988876532 234567877777777888888888877777763 454 344444
Q ss_pred HHHHHHhcCCHHHHHHHHHHHH
Q 004470 647 LLQGHCKARNMKEAWFLHKEMV 668 (751)
Q Consensus 647 li~~~~~~g~~~~A~~~~~~~~ 668 (751)
=..++....++++|....++..
T Consensus 159 ~Akc~~eLe~~~~a~nw~ee~~ 180 (390)
T KOG0551|consen 159 GAKCLLELERFAEAVNWCEEGL 180 (390)
T ss_pred hhHHHHHHHHHHHHHHHHhhhh
Confidence 4555666777777777666654
No 460
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=32.84 E-value=2.5e+02 Score=22.22 Aligned_cols=14 Identities=29% Similarity=0.292 Sum_probs=5.3
Q ss_pred CCHHHHHHHHHHHH
Q 004470 270 GKIKEAHLLLLQME 283 (751)
Q Consensus 270 g~~~~A~~~~~~m~ 283 (751)
|+.+.|.+++..+.
T Consensus 50 g~~~~ar~LL~~L~ 63 (88)
T cd08819 50 GNESGARELLKRIV 63 (88)
T ss_pred CcHHHHHHHHHHhc
Confidence 33333333333333
No 461
>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=32.23 E-value=85 Score=23.99 Aligned_cols=19 Identities=26% Similarity=0.137 Sum_probs=15.8
Q ss_pred HhcCCHHHHHHHHHHHHHC
Q 004470 687 LKRKKYLEARELFEEMRRG 705 (751)
Q Consensus 687 ~~~g~~~~A~~~~~~~~~~ 705 (751)
-..|++++|+++|...++.
T Consensus 17 D~~gny~eA~~lY~~ale~ 35 (75)
T cd02680 17 DEKGNAEEAIELYTEAVEL 35 (75)
T ss_pred hHhhhHHHHHHHHHHHHHH
Confidence 3679999999999988873
No 462
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=32.00 E-value=64 Score=32.11 Aligned_cols=28 Identities=25% Similarity=0.401 Sum_probs=13.4
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 004470 295 STIINGYCYLGELQRVLKLIEEMQIKGL 322 (751)
Q Consensus 295 ~~li~~~~~~g~~~~A~~~~~~m~~~g~ 322 (751)
+..|....+.||+++|+.++++.++.|+
T Consensus 261 ~~aI~~AVk~gDi~KAL~LldEAe~LG~ 288 (303)
T PRK10564 261 NQAIKQAVKKGDVDKALKLLDEAERLGS 288 (303)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 3444444444444444444444444443
No 463
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=31.65 E-value=5.5e+02 Score=25.86 Aligned_cols=42 Identities=10% Similarity=0.202 Sum_probs=21.9
Q ss_pred HHHHHHHHcCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHH
Q 004470 592 KLLKWMLEKGLKPNAATYNPLIKQHCLRNDMRTTAKIYKGMC 633 (751)
Q Consensus 592 ~l~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 633 (751)
++++.+.+.++.|.-..+..+.-.+...=.+.+.+.+|+.+.
T Consensus 264 EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~ 305 (370)
T KOG4567|consen 264 ELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLL 305 (370)
T ss_pred HHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHh
Confidence 455555555555555555544444445555555555555554
No 464
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=31.62 E-value=1.1e+02 Score=19.81 Aligned_cols=29 Identities=28% Similarity=0.468 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 004470 712 EIYYFFVDINFEEGNTEITLELCDAAIEC 740 (751)
Q Consensus 712 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 740 (751)
.+|..|+..-...++++.|.+=|+++++.
T Consensus 2 dv~~~Lgeisle~e~f~qA~~D~~~aL~i 30 (38)
T PF10516_consen 2 DVYDLLGEISLENENFEQAIEDYEKALEI 30 (38)
T ss_pred cHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 35667778888888888888888887764
No 465
>PRK09857 putative transposase; Provisional
Probab=31.58 E-value=2.6e+02 Score=28.21 Aligned_cols=64 Identities=8% Similarity=-0.024 Sum_probs=35.4
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 004470 646 ILLQGHCKARNMKEAWFLHKEMVQKGFNLTTSSYNALIKGFLKRKKYLEARELFEEMRRGGLVAD 710 (751)
Q Consensus 646 ~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 710 (751)
.++....+.|+.++-.++++.+.+. .+.......+++.-+.+.|.-++++++..+|+..|+..+
T Consensus 211 ~ll~Yi~~~~~~~~~~~~~~~l~~~-~~~~~e~iMTiAEqL~qeG~qe~~~~ia~~ml~~g~~~~ 274 (292)
T PRK09857 211 GLFNYILQTGDAVRFNDFIDGVAER-SPKHKESLMTIAERLRQEGEQSKALHIAKIMLESGVPLA 274 (292)
T ss_pred HHHHHHhhccccchHHHHHHHHHHh-CccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHH
Confidence 3444334555555555555555544 222333444566666666666667777777777665443
No 466
>KOG1498 consensus 26S proteasome regulatory complex, subunit RPN5/PSMD12 [Posttranslational modification, protein turnover, chaperones]
Probab=30.82 E-value=6.4e+02 Score=26.36 Aligned_cols=101 Identities=13% Similarity=0.094 Sum_probs=65.4
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHC--CCC-CC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCCH-----HH
Q 004470 645 NILLQGHCKARNMKEAWFLHKEMVQK--GFN-LT--TSSYNALIKGFLKRKKYLEARELFEEMRRGGL-VADR-----EI 713 (751)
Q Consensus 645 ~~li~~~~~~g~~~~A~~~~~~~~~~--~~~-p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~-----~~ 713 (751)
..|...+-..|+.++|..++.+..-. |.- .. .....--++.|...++|-.|.-+-+++..+-+ .||. ..
T Consensus 135 k~L~~ike~~Gdi~~Aa~il~el~VETygsm~~~ekV~fiLEQmrKOG~~~D~vra~i~skKI~~K~F~~~~~~~lKlky 214 (439)
T KOG1498|consen 135 KMLAKIKEEQGDIAEAADILCELQVETYGSMEKSEKVAFILEQMRLCLLRLDYVRAQIISKKINKKFFEKPDVQELKLKY 214 (439)
T ss_pred HHHHHHHHHcCCHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhHHhcCCccHHHHHHHH
Confidence 45566777889999998887765321 100 00 01111224556677888888877777765432 3333 45
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC
Q 004470 714 YYFFVDINFEEGNTEITLELCDAAIECYLVGK 745 (751)
Q Consensus 714 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 745 (751)
|..++......+.+=.+.+.|+.+.+.+-+..
T Consensus 215 Y~lmI~l~lh~~~Yl~v~~~Yraiy~t~~vk~ 246 (439)
T KOG1498|consen 215 YELMIRLGLHDRAYLNVCRSYRAIYDTGNVKE 246 (439)
T ss_pred HHHHHHhcccccchhhHHHHHHHHhccccccc
Confidence 67777777788888899999998888776655
No 467
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=30.64 E-value=7.2e+02 Score=26.87 Aligned_cols=86 Identities=15% Similarity=0.089 Sum_probs=46.4
Q ss_pred HhcCCHHHHHHHHHHHHHCC-CCCCH-------HHHHHHHH-HHHHcCChhHHHHHHHHHHhCCCCCCHHHH--HHHHHH
Q 004470 407 CLTGKMVEAEKLFHEMLGRG-LEPDE-------IVYTALID-GYCKAGGMKKAFSLHNNMVHMRLTPNVVTY--TALADG 475 (751)
Q Consensus 407 ~~~g~~~~A~~~~~~m~~~~-~~p~~-------~~~~~li~-~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~--~~li~~ 475 (751)
.-.|+..+|++-+.+|.+.- -.|.. .....++. .++..|.++.|..-|....+.--..|...+ ..+.-.
T Consensus 334 lv~~~~~~al~~i~dm~~w~~r~p~~~Llr~~~~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~~~dl~a~~nlnlAi~ 413 (629)
T KOG2300|consen 334 LVRGDYVEALEEIVDMKNWCTRFPTPLLLRAHEAQIHMLLGLYSHSVNCYENAEFHFIEATKLTESIDLQAFCNLNLAIS 413 (629)
T ss_pred HHhCCHHHHHHHHHHHHHHHHhCCchHHHHHhHHHHHHHHhhHhhhcchHHHHHHHHHHHHHhhhHHHHHHHHHHhHHHH
Confidence 34688888888888887641 12221 11122333 335567778887777766654222232222 234455
Q ss_pred HHhcCCHHHHHHHHHHH
Q 004470 476 LCKSGELETANELLHEM 492 (751)
Q Consensus 476 ~~~~g~~~~A~~l~~~m 492 (751)
|.+.|+-+.-.++++.+
T Consensus 414 YL~~~~~ed~y~~ld~i 430 (629)
T KOG2300|consen 414 YLRIGDAEDLYKALDLI 430 (629)
T ss_pred HHHhccHHHHHHHHHhc
Confidence 67766666555555544
No 468
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=30.18 E-value=3.2e+02 Score=22.64 Aligned_cols=81 Identities=12% Similarity=-0.017 Sum_probs=44.7
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 004470 619 RNDMRTTAKIYKGMCAQGITPDGNTYNILLQGHCKARNMKEAWFLHKEMVQKGFNLTTSSYNALIKGFLKRKKYLEAREL 698 (751)
Q Consensus 619 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~ 698 (751)
....++|..+.+-+...+- -...+--+-+..+.+.|++++|+ ..-. ....||...|..| +-.+.|--+++...
T Consensus 19 ~HcH~EA~tIa~wL~~~~~-~~E~v~lIr~~sLmNrG~Yq~AL---l~~~-~~~~pdL~p~~AL--~a~klGL~~~~e~~ 91 (116)
T PF09477_consen 19 HHCHQEANTIADWLEQEGE-MEEVVALIRLSSLMNRGDYQEAL---LLPQ-CHCYPDLEPWAAL--CAWKLGLASALESR 91 (116)
T ss_dssp TT-HHHHHHHHHHHHHTTT-THHHHHHHHHHHHHHTT-HHHHH---HHHT-TS--GGGHHHHHH--HHHHCT-HHHHHHH
T ss_pred hHHHHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHhhHHHHHHH---Hhcc-cCCCccHHHHHHH--HHHhhccHHHHHHH
Confidence 3456788888887777543 12222233455677888888882 2221 2345666666544 34577877777777
Q ss_pred HHHHHHCC
Q 004470 699 FEEMRRGG 706 (751)
Q Consensus 699 ~~~~~~~~ 706 (751)
+.++...|
T Consensus 92 l~rla~~g 99 (116)
T PF09477_consen 92 LTRLASSG 99 (116)
T ss_dssp HHHHCT-S
T ss_pred HHHHHhCC
Confidence 77766554
No 469
>PF07678 A2M_comp: A-macroglobulin complement component; InterPro: IPR011626 This domain covers the complement component region of the alpha-2-macroglobulin family. The alpha-macroglobulin (aM) family of proteins includes protease inhibitors [], typified by the human tetrameric a2-macroglobulin (a2M); they belong to the MEROPS proteinase inhibitor family I39, clan IL. These protease inhibitors share several defining properties, which include (i) the ability to inhibit proteases from all catalytic classes, (ii) the presence of a 'bait region' and a thiol ester, (iii) a similar protease inhibitory mechanism and (iv) the inactivation of the inhibitory capacity by reaction of the thiol ester with small primary amines. aM protease inhibitors inhibit by steric hindrance []. The mechanism involves protease cleavage of the bait region, a segment of the aM that is particularly susceptible to proteolytic cleavage, which initiates a conformational change such that the aM collapses about the protease. In the resulting aM-protease complex, the active site of the protease is sterically shielded, thus substantially decreasing access to protein substrates. Two additional events occur as a consequence of bait region cleavage, namely (i) the h-cysteinyl-g-glutamyl thiol ester becomes highly reactive and (ii) a major conformational change exposes a conserved COOH-terminal receptor binding domain [] (RBD). RBD exposure allows the aM protease complex to bind to clearance receptors and be removed from circulation []. Tetrameric, dimeric, and, more recently, monomeric aM protease inhibitors have been identified [, ].; GO: 0005615 extracellular space; PDB: 1QSJ_D 1QQF_A 4ACQ_C 2B39_B 2WIN_H 2I07_B 2ICF_B 2XWJ_D 3G6J_B 2NOJ_C ....
Probab=30.15 E-value=2.3e+02 Score=27.62 Aligned_cols=111 Identities=13% Similarity=0.128 Sum_probs=49.7
Q ss_pred HHHHHHHHhCCCccCHHhHHHHHHHHHh---CCCCHHHHHHHHHhchhcCCCcCHHHHHH-HHHHHHhcC----------
Q 004470 205 RKLFEKLLNYGLVISVDSCNLFLSRLSN---TCDGLRMVVKSFTEFPELGICWNTASYNI-MIHCLCRFG---------- 270 (751)
Q Consensus 205 ~~~~~~~~~~g~~p~~~~~~~ll~~l~~---~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-li~~~~~~g---------- 270 (751)
.++|.++.+. +..|....+..+..+.. ..|.+.+.-.++..-...|.. +..+.++ ++-++...+
T Consensus 34 ~k~f~~a~~~-i~vd~~~i~~a~~wL~~~Q~~dG~F~e~~~~~~~~~~g~~~-~~~~lTA~VliAL~e~~~~~~~~~~~~ 111 (246)
T PF07678_consen 34 VKVFSQAKKY-IFVDENVICRAVKWLISQQQPDGSFEEDGPVIHREMQGGVE-DDIALTAYVLIALLEAGSLCDSEKPEY 111 (246)
T ss_dssp HHHHHHHTTT-S-CEHHHHHHHHHHHHHHBETTSEB--SSS-SSGGGSGGGT-HHHHHHHHHHHHHHHCHCCHTTTHHCH
T ss_pred HHHHHHHHHh-hcCCHHHHHHHHHHHHHhhcCCCccccCCCccccccCCCCC-CCeeehHHHHHHHHhhhhhccccchhh
Confidence 3445555554 44454433443443332 235554444444433332332 2333332 233444443
Q ss_pred --CHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004470 271 --KIKEAHLLLLQMELRGCSPDVVSFSTIINGYCYLGELQRVLKLIEEMQI 319 (751)
Q Consensus 271 --~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 319 (751)
-+++|...++..... ..+..+...+..++...|+...+.++++.+..
T Consensus 112 ~~~i~kA~~~L~~~~~~--~~~~Y~lAl~aYAL~la~~~~~~~~~~~~L~~ 160 (246)
T PF07678_consen 112 ENAINKALNYLERHLDN--IQDPYTLALVAYALALAGDSPQASKLLNKLNS 160 (246)
T ss_dssp HHHHHHHHHHHHHHHGC--TSSHHHHHHHHHHHHHTTTCHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHhccc--cCCHHHHHHHHHHHHhhcccchHHHHHHHHHH
Confidence 234555555554321 24555555555555666666777777766643
No 470
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=30.02 E-value=2.7e+02 Score=24.56 Aligned_cols=59 Identities=14% Similarity=0.060 Sum_probs=27.8
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 004470 631 GMCAQGITPDGNTYNILLQGHCKARNMKEAWFLHKEMVQKGFNLTTSSYNALIKGFLKRK 690 (751)
Q Consensus 631 ~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 690 (751)
.+.+.|++++..- ..++..+...++.-.|.++++++.+.++..+..|...-++.+...|
T Consensus 11 ~lk~~glr~T~qR-~~vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e~G 69 (145)
T COG0735 11 RLKEAGLRLTPQR-LAVLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLEEAG 69 (145)
T ss_pred HHHHcCCCcCHHH-HHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHHCC
Confidence 3334444443332 1334444445444556666666665555554444433444444433
No 471
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=29.85 E-value=55 Score=28.13 Aligned_cols=22 Identities=27% Similarity=0.588 Sum_probs=12.0
Q ss_pred CCHHHHHHHHHHHHHCCCCCCH
Q 004470 340 SKVVEAETILREMMNQGIVPDN 361 (751)
Q Consensus 340 g~~~~A~~~~~~m~~~g~~p~~ 361 (751)
|.-.+|..+|++|++.|-+||.
T Consensus 109 gsk~DaY~VF~kML~~G~pPdd 130 (140)
T PF11663_consen 109 GSKTDAYAVFRKMLERGNPPDD 130 (140)
T ss_pred ccCCcHHHHHHHHHhCCCCCcc
Confidence 4444555566666666655554
No 472
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=29.61 E-value=6.9e+02 Score=26.32 Aligned_cols=62 Identities=13% Similarity=0.071 Sum_probs=36.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004470 258 SYNIMIHCLCRFGKIKEAHLLLLQMELRGC--SPDVVSFSTIINGYCYLGELQRVLKLIEEMQI 319 (751)
Q Consensus 258 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~--~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 319 (751)
.+.-+...|...|+++.|++.|-+..+.-- ......|-.+|..-.-.|+|........+...
T Consensus 152 a~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~s 215 (466)
T KOG0686|consen 152 ALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAES 215 (466)
T ss_pred HHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHh
Confidence 455566778888888888888877544211 01223344455555566777766666665544
No 473
>PF15297 CKAP2_C: Cytoskeleton-associated protein 2 C-terminus
Probab=29.52 E-value=5.3e+02 Score=26.51 Aligned_cols=63 Identities=14% Similarity=0.101 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 004470 658 KEAWFLHKEMVQKGFNLTT----SSYNALIKGFLKRKKYLEARELFEEMRRGGLVADREIYYFFVDINF 722 (751)
Q Consensus 658 ~~A~~~~~~~~~~~~~p~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 722 (751)
+++..++++++.. -|+. ..|..++..+...|.+++.+.+|++++..|..|-.+....+++.+-
T Consensus 120 eei~~~L~~li~~--IP~A~K~aKYWIC~Arl~~~~~~~e~vi~iyEeAi~agAqPieElR~~l~diL~ 186 (353)
T PF15297_consen 120 EEILATLSDLIKN--IPDAKKLAKYWICLARLEPRTGPIEDVIAIYEEAILAGAQPIEELRHVLVDILK 186 (353)
T ss_pred HHHHHHHHHHHhc--CchHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHH
Confidence 4555555555543 1232 3566677777777777777888888777777776666666666654
No 474
>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]
Probab=29.16 E-value=6.4e+02 Score=25.80 Aligned_cols=115 Identities=12% Similarity=0.044 Sum_probs=47.3
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh------cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 004470 623 RTTAKIYKGMCAQGITPDGNTYNILLQGHCK------ARNMKEAWFLHKEMVQKGFNLTTSSYNALIKGFLKRKKYLEAR 696 (751)
Q Consensus 623 ~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~------~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~ 696 (751)
+++..++++....+. |-+......|.++.. .-+|.....+|+-+....++| .++.|.-+ +..+..-.+.++
T Consensus 273 ~eg~all~rA~~~~~-pGPYqlqAAIaa~HA~a~~aedtDW~~I~aLYdaL~~~apSP-vV~LNRAV-Ala~~~Gp~agL 349 (415)
T COG4941 273 DEGLALLDRALASRR-PGPYQLQAAIAALHARARRAEDTDWPAIDALYDALEQAAPSP-VVTLNRAV-ALAMREGPAAGL 349 (415)
T ss_pred HHHHHHHHHHHHcCC-CChHHHHHHHHHHHHhhcccCCCChHHHHHHHHHHHHhCCCC-eEeehHHH-HHHHhhhHHhHH
Confidence 444444444444442 444444444433321 123444555555554443332 11222211 222233344455
Q ss_pred HHHHHHHHCCCCCCHHHHH-HHHHHHHhcCChhHHHHHHHHHHHc
Q 004470 697 ELFEEMRRGGLVADREIYY-FFVDINFEEGNTEITLELCDAAIEC 740 (751)
Q Consensus 697 ~~~~~~~~~~~~~~~~~~~-~l~~~~~~~g~~~~A~~~~~~~~~~ 740 (751)
.+.+-+.+.+--.+...|. .-++.+.+.|+.++|..-|+++++.
T Consensus 350 a~ve~L~~~~~L~gy~~~h~~RadlL~rLgr~~eAr~aydrAi~L 394 (415)
T COG4941 350 AMVEALLARPRLDGYHLYHAARADLLARLGRVEEARAAYDRAIAL 394 (415)
T ss_pred HHHHHhhcccccccccccHHHHHHHHHHhCChHHHHHHHHHHHHh
Confidence 5555544432111111111 2234455556666666666655543
No 475
>KOG2297 consensus Predicted translation factor, contains W2 domain [Translation, ribosomal structure and biogenesis]
Probab=29.10 E-value=6.1e+02 Score=25.53 Aligned_cols=16 Identities=19% Similarity=0.370 Sum_probs=7.5
Q ss_pred HHHHHHHHHHhcCCHH
Q 004470 678 SYNALIKGFLKRKKYL 693 (751)
Q Consensus 678 ~~~~l~~~~~~~g~~~ 693 (751)
.|..|+.+++..|+.+
T Consensus 323 ~yaPLL~af~s~g~sE 338 (412)
T KOG2297|consen 323 QYAPLLAAFCSQGQSE 338 (412)
T ss_pred hhhHHHHHHhcCChHH
Confidence 4444444444444443
No 476
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=28.76 E-value=8.3e+02 Score=27.03 Aligned_cols=171 Identities=15% Similarity=0.076 Sum_probs=80.5
Q ss_pred HcCCHHHHHHHHHHHHhCCCCC------------CHHHHHHHHHHHHhcCChhHHHHHHHHHHH---cCCCCCH--hhHH
Q 004470 548 KSGEMVKAHELLRDMLDKGLQP------------SVVTFNVLMNGFCMSGMIEDGEKLLKWMLE---KGLKPNA--ATYN 610 (751)
Q Consensus 548 ~~g~~~~A~~~~~~~~~~~~~p------------~~~~~~~li~~~~~~g~~~~A~~l~~~~~~---~g~~p~~--~~~~ 610 (751)
....+++|...|...+... .| .+.+.-.+...+-.+|+.+.|.++..+.+- .-..|.. .+.+
T Consensus 250 hs~sYeqaq~~F~~av~~~-d~n~v~~lL~ssPYHvdsLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~sg~ 328 (665)
T KOG2422|consen 250 HSNSYEQAQRDFYLAVIVH-DPNNVLILLISSPYHVDSLLQVADIFRFQGDREMAADLIERGLYVFDRALHPNFIPFSGN 328 (665)
T ss_pred cchHHHHHHHHHHHHHhhc-CCcceeeeeccCCcchhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhcccccccccc
Confidence 4456778888887776542 22 233445555667777888877777765541 1111110 0000
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHH---HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 004470 611 PLIKQHCLRNDMRTTAKIYKGMCAQGITPDGNTYNIL---LQGHCKARNMKEAWFLHKEMVQKGFNLTTSSYNALIKGFL 687 (751)
Q Consensus 611 ~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l---i~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~ 687 (751)
+-+ .....-|...|-+| +..+.+.|-+..|.+..+-+.+.++.-|+.....+|+.|.
T Consensus 329 cRL--------------------~y~~~eNR~FyL~l~r~m~~l~~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~A 388 (665)
T KOG2422|consen 329 CRL--------------------PYIYPENRQFYLALFRYMQSLAQRGCWRTALEWCKLLLSLDPSEDPLGILYLIDIYA 388 (665)
T ss_pred ccC--------------------cccchhhHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCcCCchhHHHHHHHHH
Confidence 000 00001112222222 2233455666666666666666555555555555665554
Q ss_pred -hcCCHHHHHHHHHHHHHC---CCCCCHHHHHHHHHHHHhcCC---hhHHHHHHHHHHH
Q 004470 688 -KRKKYLEARELFEEMRRG---GLVADREIYYFFVDINFEEGN---TEITLELCDAAIE 739 (751)
Q Consensus 688 -~~g~~~~A~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~ 739 (751)
++.+|+=-+++++..... ...|+-..-..++..|.+... .+.|...+.+++.
T Consensus 389 LrareYqwiI~~~~~~e~~n~l~~~PN~~yS~AlA~f~l~~~~~~~rqsa~~~l~qAl~ 447 (665)
T KOG2422|consen 389 LRAREYQWIIELSNEPENMNKLSQLPNFGYSLALARFFLRKNEEDDRQSALNALLQALK 447 (665)
T ss_pred HHHHhHHHHHHHHHHHHhhccHhhcCCchHHHHHHHHHHhcCChhhHHHHHHHHHHHHH
Confidence 445555555555554321 223444433344444444433 3344444444443
No 477
>PHA02537 M terminase endonuclease subunit; Provisional
Probab=28.60 E-value=4e+02 Score=25.64 Aligned_cols=23 Identities=17% Similarity=0.135 Sum_probs=16.3
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCC
Q 004470 616 HCLRNDMRTTAKIYKGMCAQGIT 638 (751)
Q Consensus 616 ~~~~g~~~~A~~~~~~m~~~g~~ 638 (751)
+...|+++.|+++.+.+++.|.+
T Consensus 93 ~~D~Gd~~~AL~ia~yAI~~~l~ 115 (230)
T PHA02537 93 RFDIGDFDGALEIAEYALEHGLT 115 (230)
T ss_pred eeeccCHHHHHHHHHHHHHcCCC
Confidence 34677777777777777777643
No 478
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=28.50 E-value=5.4e+02 Score=28.79 Aligned_cols=95 Identities=9% Similarity=0.026 Sum_probs=54.1
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCH------hhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 004470 573 TFNVLMNGFCMSGMIEDGEKLLKWMLEKGLKPNA------ATYNPLIKQHCLRNDMRTTAKIYKGMCAQGITPDGNTYNI 646 (751)
Q Consensus 573 ~~~~li~~~~~~g~~~~A~~l~~~~~~~g~~p~~------~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ 646 (751)
.||..... .+..++..+.+.|..-..- +..|. .....+.-+|....+.+.|.++++++.+.+ +.++.+--.
T Consensus 357 LWn~A~~~-F~~~~Y~~s~~~y~~Sl~~-i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d-~~~~l~q~~ 433 (872)
T KOG4814|consen 357 LWNTAKKL-FKMEKYVVSIRFYKLSLKD-IISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVD-RQSPLCQLL 433 (872)
T ss_pred HHHhhHHH-HHHHHHHHHHHHHHHHHHh-ccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhc-cccHHHHHH
Confidence 34443333 2445666777766654432 12121 223445555667777788888888777643 224444444
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHC
Q 004470 647 LLQGHCKARNMKEAWFLHKEMVQK 670 (751)
Q Consensus 647 li~~~~~~g~~~~A~~~~~~~~~~ 670 (751)
+.......|+.++|+.........
T Consensus 434 ~~~~~~~E~~Se~AL~~~~~~~s~ 457 (872)
T KOG4814|consen 434 MLQSFLAEDKSEEALTCLQKIKSS 457 (872)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhh
Confidence 555666777777777777666654
No 479
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=28.36 E-value=3.3e+02 Score=22.26 Aligned_cols=43 Identities=19% Similarity=0.183 Sum_probs=20.7
Q ss_pred HHHHHHHHhhhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHH
Q 004470 112 RLVLDFFDWACLRREPILEARCIVVQISVAAKDLKTAHGLIHD 154 (751)
Q Consensus 112 ~~al~~f~~~~~~~~~~~~~~~~~~~~l~~~~~~~~a~~~l~~ 154 (751)
+.|-.+-+|........--...+.+..|.+.|+|++|..+.+.
T Consensus 22 qEA~tIAdwL~~~~~~~E~v~lIRlsSLmNrG~Yq~Al~l~~~ 64 (115)
T TIGR02508 22 QEANTIADWLHLKGESEEAVQLIRLSSLMNRGDYQSALQLGNK 64 (115)
T ss_pred HHHHHHHHHHhcCCchHHHHHHHHHHHHHccchHHHHHHhcCC
Confidence 4555666665443322112223334445566666666554443
No 480
>KOG4521 consensus Nuclear pore complex, Nup160 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=28.18 E-value=1.2e+03 Score=28.52 Aligned_cols=180 Identities=14% Similarity=0.036 Sum_probs=96.8
Q ss_pred hhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCccCHHhHHHHHHHHHhCCCCHHHHHHHHHhchhcCCCc---C--HHHH
Q 004470 185 PHVFDIFFQVLVEARKLNEARKLFEKLLNYGLVISVDSCNLFLSRLSNTCDGLRMVVKSFTEFPELGICW---N--TASY 259 (751)
Q Consensus 185 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~l~~~~~~~~~a~~~~~~~~~~~~~~---~--~~~~ 259 (751)
+..-.+++.+|...|...+|+..|.++... +.-+. .|..+.+..+- .+--+..|-.| . ..-|
T Consensus 920 ~v~rfmlg~~yl~tge~~kAl~cF~~a~Sg-~ge~~-----aL~~lv~~~~p-------~~~sv~dG~t~s~e~t~lhYY 986 (1480)
T KOG4521|consen 920 PVIRFMLGIAYLGTGEPVKALNCFQSALSG-FGEGN-----ALRKLVYFLLP-------KRFSVADGKTPSEELTALHYY 986 (1480)
T ss_pred HHHHHhhheeeecCCchHHHHHHHHHHhhc-cccHH-----HHHHHHHHhcC-------CCCchhcCCCCCchHHHHHHH
Confidence 444567788888999999999999988653 22222 12222211000 00001112111 1 3346
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCC--CCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcc----cHHHH
Q 004470 260 NIMIHCLCRFGKIKEAHLLLLQMELRGC--SPD-VVSFSTIINGYCYLGELQRVLKLIEEMQIKGLKPNPY----TYNSV 332 (751)
Q Consensus 260 ~~li~~~~~~g~~~~A~~~~~~m~~~g~--~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~----~~~~l 332 (751)
..+++.+-+.|-.+.+.++-....+.-. .|. ..+++.+.+.....|.+-+|.+.+-+ .||.. ....+
T Consensus 987 lkv~rlle~hn~~E~vcQlA~~AIe~l~dd~ps~a~~~t~vFnhhldlgh~~qAy~ai~~------npdserrrdcLRql 1060 (1480)
T KOG4521|consen 987 LKVVRLLEEHNHAEEVCQLAVKAIENLPDDNPSVALISTTVFNHHLDLGHWFQAYKAILR------NPDSERRRDCLRQL 1060 (1480)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhhhchhhHHHHHHHHHc------CCcHHHHHHHHHHH
Confidence 6788888888888888888777655311 122 34567777888888888877766643 23432 34556
Q ss_pred HHHHHhcCCHHH------------HHH-HHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 004470 333 VRLLCKTSKVVE------------AET-ILREMMNQGIVPDNVIYTTLIDGFCKMGNVAAAYRL 383 (751)
Q Consensus 333 i~~~~~~g~~~~------------A~~-~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~ 383 (751)
+-.++..|..+. ... +++..-.....-....|+.|-..+...+++.+|-.+
T Consensus 1061 vivLfecg~l~~L~~fpfigl~~eve~~l~esaaRs~~~mk~nyYelLYAfh~~RhN~Rkaatv 1124 (1480)
T KOG4521|consen 1061 VIVLFECGELEALATFPFIGLEQEVEDFLRESAARSSPSMKKNYYELLYAFHVARHNFRKAATV 1124 (1480)
T ss_pred HHHHHhccchHHHhhCCccchHHHHHHHHHHHHhhcCccccccHHHHHHHHHHhhcchhHHHHH
Confidence 666666666442 222 122111111111223455555556666666665443
No 481
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=27.31 E-value=4.4e+02 Score=23.28 Aligned_cols=80 Identities=15% Similarity=0.219 Sum_probs=38.5
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCC-----CCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHhCCCCCCHHHHHHH
Q 004470 504 YNSIVNGLCKAGNILQAVKLMEDMEVAG-----FHPDTFTYTTIMDAYCKSGE-MVKAHELLRDMLDKGLQPSVVTFNVL 577 (751)
Q Consensus 504 ~~~li~~~~~~g~~~~A~~~~~~~~~~~-----~~~~~~~~~~li~~~~~~g~-~~~A~~~~~~~~~~~~~p~~~~~~~l 577 (751)
.+.++.-....++....+.+++.+.... -..+...|..++.+..+..- --.+..+|.-+.+.+.+.+..-|..+
T Consensus 42 iN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~l 121 (145)
T PF13762_consen 42 INCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSCL 121 (145)
T ss_pred HHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 3555555555555555555555542110 01233445555555543333 23344555555555555555556555
Q ss_pred HHHHHh
Q 004470 578 MNGFCM 583 (751)
Q Consensus 578 i~~~~~ 583 (751)
+.++.+
T Consensus 122 i~~~l~ 127 (145)
T PF13762_consen 122 IKAALR 127 (145)
T ss_pred HHHHHc
Confidence 555443
No 482
>KOG4521 consensus Nuclear pore complex, Nup160 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=27.30 E-value=1.2e+03 Score=28.40 Aligned_cols=81 Identities=12% Similarity=0.086 Sum_probs=48.3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC----cccHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH----H
Q 004470 292 VSFSTIINGYCYLGELQRVLKLIEEMQIKGLKPN----PYTYNSVVRLLCKTSKVVEAETILREMMNQGIVPDNV----I 363 (751)
Q Consensus 292 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~----~ 363 (751)
.-|-.++..+-+.+-.+.+.++-....+. ++++ ..+++.+.+.....|.+-+|...+- . .||.. .
T Consensus 984 hYYlkv~rlle~hn~~E~vcQlA~~AIe~-l~dd~ps~a~~~t~vFnhhldlgh~~qAy~ai~---~---npdserrrdc 1056 (1480)
T KOG4521|consen 984 HYYLKVVRLLEEHNHAEEVCQLAVKAIEN-LPDDNPSVALISTTVFNHHLDLGHWFQAYKAIL---R---NPDSERRRDC 1056 (1480)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHh-CCCcchhHHHHHHHHHHhhhchhhHHHHHHHHH---c---CCcHHHHHHH
Confidence 34566777777777777777777766654 2222 3346666777777777766655433 2 23432 3
Q ss_pred HHHHHHHHHHcCCHHH
Q 004470 364 YTTLIDGFCKMGNVAA 379 (751)
Q Consensus 364 ~~~li~~~~~~g~~~~ 379 (751)
...|+-.++.+|.++.
T Consensus 1057 LRqlvivLfecg~l~~ 1072 (1480)
T KOG4521|consen 1057 LRQLVIVLFECGELEA 1072 (1480)
T ss_pred HHHHHHHHHhccchHH
Confidence 4556666666666543
No 483
>TIGR02710 CRISPR-associated protein, TIGR02710 family. Members of this family are found, exclusively in the vicinity of CRISPR repeats and other CRISPR-associated (cas) genes, in Methanothermobacter thermautotrophicus (Archaea), Thermus thermophilus (Deinococcus-Thermus), Chloroflexus aurantiacus (Chloroflexi), and Thermomicrobium roseum (Thermomicrobia).
Probab=27.27 E-value=7.5e+02 Score=25.98 Aligned_cols=18 Identities=11% Similarity=-0.134 Sum_probs=9.0
Q ss_pred hcCChhHHHHHHHHHHHc
Q 004470 583 MSGMIEDGEKLLKWMLEK 600 (751)
Q Consensus 583 ~~g~~~~A~~l~~~~~~~ 600 (751)
+.+++..|.++|+++...
T Consensus 142 n~~dy~aA~~~~~~L~~r 159 (380)
T TIGR02710 142 NAFDYLFAHARLETLLRR 159 (380)
T ss_pred HhcChHHHHHHHHHHHhc
Confidence 344555555555555544
No 484
>PRK09857 putative transposase; Provisional
Probab=27.24 E-value=4.1e+02 Score=26.75 Aligned_cols=64 Identities=11% Similarity=0.149 Sum_probs=46.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCC
Q 004470 679 YNALIKGFLKRKKYLEARELFEEMRRGGLVADREIYYFFVDINFEEGNTEITLELCDAAIECYLV 743 (751)
Q Consensus 679 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 743 (751)
+..+++-..+.|+.++-.++++...+. .+...+....++.-+.+.|..+++++...+++..|..
T Consensus 209 ~~~ll~Yi~~~~~~~~~~~~~~~l~~~-~~~~~e~iMTiAEqL~qeG~qe~~~~ia~~ml~~g~~ 272 (292)
T PRK09857 209 IKGLFNYILQTGDAVRFNDFIDGVAER-SPKHKESLMTIAERLRQEGEQSKALHIAKIMLESGVP 272 (292)
T ss_pred HHHHHHHHhhccccchHHHHHHHHHHh-CccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 344554445677777777777777665 3445556667888888889888899999999988865
No 485
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=27.19 E-value=3.6e+02 Score=22.33 Aligned_cols=78 Identities=13% Similarity=0.008 Sum_probs=40.6
Q ss_pred hHHHHHHHHhhhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHcCCCCCchhhhHHHHHHHHHhhhcCCCChhhHHH
Q 004470 111 YRLVLDFFDWACLRREPILEARCIVVQISVAAKDLKTAHGLIHDFWAKPNLDASIAFTHFVERLIYTYKDWGSDPHVFDI 190 (751)
Q Consensus 111 ~~~al~~f~~~~~~~~~~~~~~~~~~~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 190 (751)
.++|-...+|........-.+..+.+..+.++|+|++| ++... |...|..--.
T Consensus 22 H~EA~tIa~wL~~~~~~~E~v~lIr~~sLmNrG~Yq~A--Ll~~~-------------------------~~~~pdL~p~ 74 (116)
T PF09477_consen 22 HQEANTIADWLEQEGEMEEVVALIRLSSLMNRGDYQEA--LLLPQ-------------------------CHCYPDLEPW 74 (116)
T ss_dssp HHHHHHHHHHHHHTTTTHHHHHHHHHHHHHHTT-HHHH--HHHHT-------------------------TS--GGGHHH
T ss_pred HHHHHHHHHHHHhCCcHHHHHHHHHHHHHHhhHHHHHH--HHhcc-------------------------cCCCccHHHH
Confidence 46677777777665442223334445566677777777 22211 1222333333
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCC
Q 004470 191 FFQVLVEARKLNEARKLFEKLLNYG 215 (751)
Q Consensus 191 l~~~~~~~g~~~~A~~~~~~~~~~g 215 (751)
++-+-.+.|..+++...+.++-..|
T Consensus 75 ~AL~a~klGL~~~~e~~l~rla~~g 99 (116)
T PF09477_consen 75 AALCAWKLGLASALESRLTRLASSG 99 (116)
T ss_dssp HHHHHHHCT-HHHHHHHHHHHCT-S
T ss_pred HHHHHHhhccHHHHHHHHHHHHhCC
Confidence 4444567777777777777665544
No 486
>PF14669 Asp_Glu_race_2: Putative aspartate racemase
Probab=27.07 E-value=5.2e+02 Score=24.07 Aligned_cols=183 Identities=13% Similarity=0.116 Sum_probs=0.0
Q ss_pred HCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHHC--------CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Q 004470 319 IKGLKPNPYTYNSVVRLLCKTSKVVEAETILREMMNQ--------GIVPDNVIYTTLIDGFCKMGNVAAAYRLFDEMRGL 390 (751)
Q Consensus 319 ~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--------g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 390 (751)
+.|..++...++.++..+....-...-...+-.++.+ +...|......=+..|-+.||+.+--.+|-.+..
T Consensus 1 eAGm~l~~Eh~~yiiklL~qlq~s~qEi~~vl~~KsR~~~~~~~~~~~~~l~~~~~eie~Ckek~DW~klg~ly~nv~~- 79 (233)
T PF14669_consen 1 EAGMVLDPEHFNYIIKLLYQLQASKQEIDAVLEIKSRLQARQFKKNWLSDLASAVVEIEHCKEKGDWTKLGNLYINVKM- 79 (233)
T ss_pred CCcccCCHHHHHHHHHHHHhhcCchhhhHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhhccHHHHhhHHhhHHh-
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHH
Q 004470 391 NIIPDLLTYTAIICGFCLTGKMVEAEKLFHEMLGRGLEP-DEIVYTALIDGYCKAGGMKKAFSLHNNMVHMRLTPNVVTY 469 (751)
Q Consensus 391 ~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 469 (751)
++-+.++++.--....+.+....+. ....|......-++.-..+++-+.+ =-.+-
T Consensus 80 --------------gce~~~dlq~~~~~va~~Ltkd~Kdk~~vPFceFAetV~k~~q~~e~dK~~----------LGRiG 135 (233)
T PF14669_consen 80 --------------GCEKFADLQRFCACVAEALTKDSKDKPGVPFCEFAETVCKDPQNDEVDKTL----------LGRIG 135 (233)
T ss_pred --------------hcCCHHHHHHHHHHHHHHHHhcccccCCCCHHHHHHHHhcCCccchhhhhh----------hhHHH
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHc--------------CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 004470 470 TALADGLCKSGELETANELLHEMCRK--------------GLQLNIYTYNSIVNGLCKAGNILQAVKLMED 526 (751)
Q Consensus 470 ~~li~~~~~~g~~~~A~~l~~~m~~~--------------g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 526 (751)
-+++..|.+..++.+..++++.|.+. +..+--...|.....+.+.|.++.|+.++++
T Consensus 136 iS~m~~Yhk~~qW~KGrkvLd~l~el~i~ft~LKGL~g~e~~asrCqivn~AaEiFL~sgsidGA~~vLre 206 (233)
T PF14669_consen 136 ISLMYSYHKTLQWSKGRKVLDKLHELQIHFTSLKGLTGPEKLASRCQIVNIAAEIFLKSGSIDGALWVLRE 206 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCccCccccCchhhhHHHHHHHHHHcCCchHHHHHHhc
No 487
>KOG2582 consensus COP9 signalosome, subunit CSN3 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=26.24 E-value=7.5e+02 Score=25.63 Aligned_cols=87 Identities=8% Similarity=0.036 Sum_probs=44.3
Q ss_pred cCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCc----ccH
Q 004470 254 WNTASYNIMIHCLCRFGKIKEAHLLLLQMELRGCSPDVVSFSTIINGYCYLGELQRVLKLIEEMQIKGLKPNP----YTY 329 (751)
Q Consensus 254 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~----~~~ 329 (751)
|++.+.-.+++-|....+.+.-..+-+.. ..+.+.+..++.+.+.....++...+.... ..|.. ...
T Consensus 73 ~~~~~li~~~~~FV~~~n~eqlr~as~~f--------~~lc~~l~~~~~~~~~p~~gi~ii~~av~k-~~~~~~qlT~~H 143 (422)
T KOG2582|consen 73 PDPETLIELLNDFVDENNGEQLRLASEIF--------FPLCHDLTEAVVKKNKPLRGIRIIMQAVDK-MQPSNGQLTSIH 143 (422)
T ss_pred CCHHHHHHHHHHHHHhcChHHHhhHHHHH--------HHHHHHHHHHHHhcCCccccchHHHHHHHH-hccCccchhhhH
Confidence 56667667777776666543322221111 124555666666666666555555444433 12222 223
Q ss_pred HHHHHHHHhcCCHHHHHHHH
Q 004470 330 NSVVRLLCKTSKVVEAETIL 349 (751)
Q Consensus 330 ~~li~~~~~~g~~~~A~~~~ 349 (751)
..++..+.+.+++.-+...+
T Consensus 144 ~~l~~~~L~ak~y~~~~p~l 163 (422)
T KOG2582|consen 144 ADLLQLCLEAKDYASVLPYL 163 (422)
T ss_pred HHHHHHHHHhhcccccCCcc
Confidence 44555666666665554443
No 488
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=26.10 E-value=1.2e+03 Score=28.07 Aligned_cols=28 Identities=14% Similarity=0.313 Sum_probs=16.9
Q ss_pred HHHHHHHHHHhcC--ChhHHHHHHHHHHHc
Q 004470 573 TFNVLMNGFCMSG--MIEDGEKLLKWMLEK 600 (751)
Q Consensus 573 ~~~~li~~~~~~g--~~~~A~~l~~~~~~~ 600 (751)
-...++.+|++.+ ++++|+.+..++.+.
T Consensus 814 ~l~~IlTa~vkk~Pp~le~aL~~I~~l~~~ 843 (928)
T PF04762_consen 814 YLQPILTAYVKKSPPDLEEALQLIKELREE 843 (928)
T ss_pred hHHHHHHHHHhcCchhHHHHHHHHHHHHhc
Confidence 3455566666666 666666666666543
No 489
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=25.87 E-value=1.2e+03 Score=27.98 Aligned_cols=261 Identities=9% Similarity=-0.025 Sum_probs=149.4
Q ss_pred CCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 004470 428 EPDEIVYTALIDGYCKAGGMKKAFSLHNNMVHMRLTPNVVTYTALADGLCKSGELETANELLHEMCRKGLQLNIYTYNSI 507 (751)
Q Consensus 428 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~~~~l 507 (751)
.+|..+-...+..+.+.+. .++...+..+++ .++...-...+.++.+.+........+..+... +|...-...
T Consensus 632 D~d~~VR~~Av~~L~~~~~-~~~~~~L~~aL~---D~d~~VR~~Aa~aL~~l~~~~~~~~~L~~~L~~---~d~~VR~~A 704 (897)
T PRK13800 632 DPDPGVRRTAVAVLTETTP-PGFGPALVAALG---DGAAAVRRAAAEGLRELVEVLPPAPALRDHLGS---PDPVVRAAA 704 (897)
T ss_pred CCCHHHHHHHHHHHhhhcc-hhHHHHHHHHHc---CCCHHHHHHHHHHHHHHHhccCchHHHHHHhcC---CCHHHHHHH
Confidence 4566666666666666665 335455555553 245555555555555443322222333344332 466666666
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCh
Q 004470 508 VNGLCKAGNILQAVKLMEDMEVAGFHPDTFTYTTIMDAYCKSGEMVKAHELLRDMLDKGLQPSVVTFNVLMNGFCMSGMI 587 (751)
Q Consensus 508 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~ 587 (751)
+..+...+..+ ...+.. +.. .+|...-...+.++.+.+..+. +..+.. .++...-...+.++...+..
T Consensus 705 ~~aL~~~~~~~-~~~l~~-~L~---D~d~~VR~~Av~aL~~~~~~~~----l~~~l~---D~~~~VR~~aa~aL~~~~~~ 772 (897)
T PRK13800 705 LDVLRALRAGD-AALFAA-ALG---DPDHRVRIEAVRALVSVDDVES----VAGAAT---DENREVRIAVAKGLATLGAG 772 (897)
T ss_pred HHHHHhhccCC-HHHHHH-Hhc---CCCHHHHHHHHHHHhcccCcHH----HHHHhc---CCCHHHHHHHHHHHHHhccc
Confidence 66665543211 122222 332 5666666667777766655332 222332 44666667777777777654
Q ss_pred hH-HHHHHHHHHHcCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 004470 588 ED-GEKLLKWMLEKGLKPNAATYNPLIKQHCLRNDMRTTAKIYKGMCAQGITPDGNTYNILLQGHCKARNMKEAWFLHKE 666 (751)
Q Consensus 588 ~~-A~~l~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 666 (751)
+. +...+..+.. .+|...-...+.++...|..+.+...+..+++ .++..+-...+.++...+. +++...+-.
T Consensus 773 ~~~~~~~L~~ll~---D~d~~VR~aA~~aLg~~g~~~~~~~~l~~aL~---d~d~~VR~~Aa~aL~~l~~-~~a~~~L~~ 845 (897)
T PRK13800 773 GAPAGDAVRALTG---DPDPLVRAAALAALAELGCPPDDVAAATAALR---ASAWQVRQGAARALAGAAA-DVAVPALVE 845 (897)
T ss_pred cchhHHHHHHHhc---CCCHHHHHHHHHHHHhcCCcchhHHHHHHHhc---CCChHHHHHHHHHHHhccc-cchHHHHHH
Confidence 43 3455555543 45777788888888888887666555655654 3455555566777777765 456677666
Q ss_pred HHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 004470 667 MVQKGFNLTTSSYNALIKGFLKRKKYLEARELFEEMRRGGLVADREIYYFFVDI 720 (751)
Q Consensus 667 ~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 720 (751)
+++ .|+...-...+.++.+.+.-..+...+..+++ .+|..+......+
T Consensus 846 ~L~---D~~~~VR~~A~~aL~~~~~~~~a~~~L~~al~---D~d~~Vr~~A~~a 893 (897)
T PRK13800 846 ALT---DPHLDVRKAAVLALTRWPGDPAARDALTTALT---DSDADVRAYARRA 893 (897)
T ss_pred Hhc---CCCHHHHHHHHHHHhccCCCHHHHHHHHHHHh---CCCHHHHHHHHHH
Confidence 664 35777777788888775434567777777776 3455554443333
No 490
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=25.74 E-value=7.7e+02 Score=30.22 Aligned_cols=158 Identities=15% Similarity=0.054 Sum_probs=93.1
Q ss_pred HhcCChhHHHH------HHHHHHHcCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHH-------CCCCCCHHHHHHHH
Q 004470 582 CMSGMIEDGEK------LLKWMLEKGLKPNAATYNPLIKQHCLRNDMRTTAKIYKGMCA-------QGITPDGNTYNILL 648 (751)
Q Consensus 582 ~~~g~~~~A~~------l~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~-------~g~~p~~~~~~~li 648 (751)
...|.+.+|.+ ++......-..+....|..+...+.+.|+.++|...-.+..- .+..-+...|..+.
T Consensus 943 ~~e~~~~~~~~~~~slnl~~~v~~~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~t~~~y~nla 1022 (1236)
T KOG1839|consen 943 LLEDGFSEAYELPESLNLLNNVMGVLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSPNTKLAYGNLA 1022 (1236)
T ss_pred hcccchhhhhhhhhhhhHHHHhhhhcchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCHHHHHHhhHHH
Confidence 33455555555 554333222233455677777888888888888876654321 22222345566666
Q ss_pred HHHHhcCCHHHHHHHHHHHHHC-----CC-CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-----CC--CCCHHHH
Q 004470 649 QGHCKARNMKEAWFLHKEMVQK-----GF-NL-TTSSYNALIKGFLKRKKYLEARELFEEMRRG-----GL--VADREIY 714 (751)
Q Consensus 649 ~~~~~~g~~~~A~~~~~~~~~~-----~~-~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~--~~~~~~~ 714 (751)
......++...|...+.+.... |. .| ...+.+.+-..+...++++.|+++.+.+... |. -.....+
T Consensus 1023 l~~f~~~~~~~al~~~~ra~~l~~Ls~ge~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a~~~~v~g~~~l~~~~~~ 1102 (1236)
T KOG1839|consen 1023 LYEFAVKNLSGALKSLNRALKLKLLSSGEDHPPTALSFINLELLLLGVEEADTALRYLESALAKNKKVLGPKELETALSY 1102 (1236)
T ss_pred HHHHhccCccchhhhHHHHHHhhccccCCCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcCccchhhhhHH
Confidence 6666777788888777776652 22 23 3334455544455568888899888888762 11 1234556
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHH
Q 004470 715 YFFVDINFEEGNTEITLELCDAAIE 739 (751)
Q Consensus 715 ~~l~~~~~~~g~~~~A~~~~~~~~~ 739 (751)
..+.+.+...|++..|....+....
T Consensus 1103 ~~~a~l~~s~~dfr~al~~ek~t~~ 1127 (1236)
T KOG1839|consen 1103 HALARLFESMKDFRNALEHEKVTYG 1127 (1236)
T ss_pred HHHHHHHhhhHHHHHHHHHHhhHHH
Confidence 6666666666777776666555433
No 491
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=25.50 E-value=3e+02 Score=24.22 Aligned_cols=32 Identities=22% Similarity=0.283 Sum_probs=13.7
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHH
Q 004470 472 LADGLCKSGELETANELLHEMCRKGLQLNIYT 503 (751)
Q Consensus 472 li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~ 503 (751)
++..+...++.-.|.++++++.+.++..+..|
T Consensus 26 vl~~L~~~~~~~sAeei~~~l~~~~p~islaT 57 (145)
T COG0735 26 VLELLLEADGHLSAEELYEELREEGPGISLAT 57 (145)
T ss_pred HHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhH
Confidence 33333434333444444444444444433333
No 492
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=25.46 E-value=8.9e+02 Score=26.23 Aligned_cols=107 Identities=18% Similarity=0.115 Sum_probs=70.1
Q ss_pred HHHHcCChhHHHHHHHHHHh---CCC--CCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHH-------cCCCCCH---
Q 004470 440 GYCKAGGMKKAFSLHNNMVH---MRL--TPN---VVTYTALADGLCKSGELETANELLHEMCR-------KGLQLNI--- 501 (751)
Q Consensus 440 ~~~~~g~~~~A~~~~~~~~~---~~~--~~~---~~~~~~li~~~~~~g~~~~A~~l~~~m~~-------~g~~~~~--- 501 (751)
.+.-.|++.+|.+++...-- .|. .|. -..||.|.-.+.+.|.+..+..+|....+ .|.+|..
T Consensus 249 ~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~t 328 (696)
T KOG2471|consen 249 LEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFT 328 (696)
T ss_pred HHHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCccee
Confidence 44567888888887755321 121 221 12346677777888889988888888764 3544321
Q ss_pred --------HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q 004470 502 --------YTYNSIVNGLCKAGNILQAVKLMEDMEVAGFHPDTFTYTTIMDAYCK 548 (751)
Q Consensus 502 --------~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~ 548 (751)
.+|| ..-.|...|++-.|.+.|.+.... +..++..|-.+..+|..
T Consensus 329 ls~nks~eilYN-cG~~~Lh~grPl~AfqCf~~av~v-fh~nPrlWLRlAEcCim 381 (696)
T KOG2471|consen 329 LSQNKSMEILYN-CGLLYLHSGRPLLAFQCFQKAVHV-FHRNPRLWLRLAECCIM 381 (696)
T ss_pred hhcccchhhHHh-hhHHHHhcCCcHHHHHHHHHHHHH-HhcCcHHHHHHHHHHHH
Confidence 2233 233567788999999988887664 36778888888888764
No 493
>PF03745 DUF309: Domain of unknown function (DUF309); InterPro: IPR005500 This family consists of eubacterial and archaebacterial proteins of unknown function. The proteins contain a motif HXXXEXX(W/Y) where X can be any amino acid. This motif is likely to be functionally important and may be involved in metal binding.; PDB: 2CXD_B 2CWY_A 2IJQ_B.
Probab=25.42 E-value=2.7e+02 Score=20.29 Aligned_cols=49 Identities=20% Similarity=0.316 Sum_probs=0.0
Q ss_pred HHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH-----hcCChhHHHHHH
Q 004470 546 YCKSGEMVKAHELLRDMLDKGLQPSVVTFNVLMNGFC-----MSGMIEDGEKLL 594 (751)
Q Consensus 546 ~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~-----~~g~~~~A~~l~ 594 (751)
+...|++-+|.++++++-.....+....+..+|+... +.|+.+.|..++
T Consensus 9 l~n~g~f~EaHEvlE~~W~~~~~~~~~~lqglIq~A~a~~h~~~gn~~gA~~l~ 62 (62)
T PF03745_consen 9 LFNAGDFFEAHEVLEELWKAAPGPERDFLQGLIQLAVALYHLRRGNPRGARRLL 62 (62)
T ss_dssp HHHTT-HHHHHHHHHHHCCCT-CCHHHHHHHHHHHHHHHHHHHCTSHHHHHHHH
T ss_pred HHcCCCHHHhHHHHHHHHHHCCcchHHHHHHHHHHHHHHHHHHhCCHHHHHHhC
No 494
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=25.28 E-value=1.3e+02 Score=22.23 Aligned_cols=49 Identities=12% Similarity=0.127 Sum_probs=24.2
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 004470 359 PDNVIYTTLIDGFCKMGNVAAAYRLFDEMRGLNIIPDLLTYTAIICGFCL 408 (751)
Q Consensus 359 p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~ 408 (751)
|....++.+++.+++..-+++++..+.+....|.. +..+|..-++.+++
T Consensus 6 ~~~~l~~Ql~el~Aed~AieDtiy~L~~al~~g~I-~~d~~lK~vR~LaR 54 (65)
T PF09454_consen 6 AEDPLSNQLYELVAEDHAIEDTIYYLDRALQRGSI-DLDTFLKQVRSLAR 54 (65)
T ss_dssp -SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSS--HHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHH
Confidence 33445555555555555555555555555555543 44444444444433
No 495
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=24.93 E-value=4.8e+02 Score=29.24 Aligned_cols=75 Identities=17% Similarity=0.246 Sum_probs=54.4
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHC--CCCCCcccHHHHHHHHHhcCCHH------HHHHHHHHHHHCCCCCCHHHHHHH
Q 004470 296 TIINGYCYLGELQRVLKLIEEMQIK--GLKPNPYTYNSVVRLLCKTSKVV------EAETILREMMNQGIVPDNVIYTTL 367 (751)
Q Consensus 296 ~li~~~~~~g~~~~A~~~~~~m~~~--g~~p~~~~~~~li~~~~~~g~~~------~A~~~~~~m~~~g~~p~~~~~~~l 367 (751)
+|+.+|...|++..+..+++..... |-+.-...||..|+...+.|.++ .|.+.++... +.-|..||..|
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf~l~~~~~~~~~~lq~a~---ln~d~~t~all 109 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSFELTDVLSNAKELLQQAR---LNGDSLTYALL 109 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhh---cCCcchHHHHH
Confidence 7899999999999999999998754 33333566888899999999764 3444444443 34577888888
Q ss_pred HHHHHH
Q 004470 368 IDGFCK 373 (751)
Q Consensus 368 i~~~~~ 373 (751)
++.-..
T Consensus 110 ~~~sln 115 (1117)
T COG5108 110 CQASLN 115 (1117)
T ss_pred HHhhcC
Confidence 776544
No 496
>PF15297 CKAP2_C: Cytoskeleton-associated protein 2 C-terminus
Probab=24.90 E-value=3.8e+02 Score=27.45 Aligned_cols=63 Identities=10% Similarity=0.110 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 004470 623 RTTAKIYKGMCAQGITPD----GNTYNILLQGHCKARNMKEAWFLHKEMVQKGFNLTTSSYNALIKGFL 687 (751)
Q Consensus 623 ~~A~~~~~~m~~~g~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~ 687 (751)
++...++.++++. .|+ ...|-.++......|.+++++.+|++++..|-.|-...-..+++.+-
T Consensus 120 eei~~~L~~li~~--IP~A~K~aKYWIC~Arl~~~~~~~e~vi~iyEeAi~agAqPieElR~~l~diL~ 186 (353)
T PF15297_consen 120 EEILATLSDLIKN--IPDAKKLAKYWICLARLEPRTGPIEDVIAIYEEAILAGAQPIEELRHVLVDILK 186 (353)
T ss_pred HHHHHHHHHHHhc--CchHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHH
Confidence 3455555555542 344 23456666667777777778888888877777776666666666654
No 497
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=24.60 E-value=3.7e+02 Score=26.19 Aligned_cols=22 Identities=14% Similarity=0.504 Sum_probs=12.7
Q ss_pred HHHHHHHHcCCHHHHHHHHHHH
Q 004470 366 TLIDGFCKMGNVAAAYRLFDEM 387 (751)
Q Consensus 366 ~li~~~~~~g~~~~A~~~~~~m 387 (751)
.+..-|.+.|++++|.++|+.+
T Consensus 183 ~~A~ey~~~g~~~~A~~~l~~~ 204 (247)
T PF11817_consen 183 EMAEEYFRLGDYDKALKLLEPA 204 (247)
T ss_pred HHHHHHHHCCCHHHHHHHHHHH
Confidence 3445555666666666666555
No 498
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=24.58 E-value=1.3e+02 Score=28.63 Aligned_cols=60 Identities=13% Similarity=0.019 Sum_probs=45.3
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH
Q 004470 650 GHCKARNMKEAWFLHKEMVQKGFNLTTSSYNALIKGFLKRKKYLEARELFEEMRRGGLVADR 711 (751)
Q Consensus 650 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 711 (751)
...+.++.+.|.+++.++.+.-+. ....|-.+...-.+.|+++.|.+-|++.++.+ ++|.
T Consensus 4 ~~~~~~D~~aaaely~qal~lap~-w~~gwfR~g~~~ekag~~daAa~a~~~~L~ld-p~D~ 63 (287)
T COG4976 4 MLAESGDAEAAAELYNQALELAPE-WAAGWFRLGEYTEKAGEFDAAAAAYEEVLELD-PEDH 63 (287)
T ss_pred hhcccCChHHHHHHHHHHhhcCch-hhhhhhhcchhhhhcccHHHHHHHHHHHHcCC-cccc
Confidence 345678888888888888876444 66788888888888888888888888888764 4443
No 499
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=24.15 E-value=1.4e+02 Score=22.15 Aligned_cols=48 Identities=8% Similarity=0.241 Sum_probs=23.8
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 004470 640 DGNTYNILLQGHCKARNMKEAWFLHKEMVQKGFNLTTSSYNALIKGFLK 688 (751)
Q Consensus 640 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 688 (751)
....++.++...++..-.++++..+.++...|. .+..+|..-++.+++
T Consensus 7 ~~~l~~Ql~el~Aed~AieDtiy~L~~al~~g~-I~~d~~lK~vR~LaR 54 (65)
T PF09454_consen 7 EDPLSNQLYELVAEDHAIEDTIYYLDRALQRGS-IDLDTFLKQVRSLAR 54 (65)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS-S-HHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHH
Confidence 334445555555555555555555555555543 244455444444443
No 500
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=23.54 E-value=9.8e+02 Score=29.42 Aligned_cols=156 Identities=16% Similarity=0.057 Sum_probs=95.3
Q ss_pred HHHcCCHHHHHH------HHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHH-----cCC--CCCHhhHHHH
Q 004470 546 YCKSGEMVKAHE------LLRDMLDKGLQPSVVTFNVLMNGFCMSGMIEDGEKLLKWMLE-----KGL--KPNAATYNPL 612 (751)
Q Consensus 546 ~~~~g~~~~A~~------~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~~~~-----~g~--~p~~~~~~~l 612 (751)
....|.+.+|.+ ++......-.++....|..+...+-+.|+.++|...-....- .|. .-+...|..+
T Consensus 942 ~~~e~~~~~~~~~~~slnl~~~v~~~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~t~~~y~nl 1021 (1236)
T KOG1839|consen 942 ALLEDGFSEAYELPESLNLLNNVMGVLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSPNTKLAYGNL 1021 (1236)
T ss_pred hhcccchhhhhhhhhhhhHHHHhhhhcchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCHHHHHHhhHH
Confidence 344566666666 555333222345667788888888899999999887654431 122 1233445555
Q ss_pred HHHHHHcCCHHHHHHHHHHHHH-----CC-CCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-----CCC--CCHHH
Q 004470 613 IKQHCLRNDMRTTAKIYKGMCA-----QG-ITPD-GNTYNILLQGHCKARNMKEAWFLHKEMVQK-----GFN--LTTSS 678 (751)
Q Consensus 613 ~~~~~~~g~~~~A~~~~~~m~~-----~g-~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-----~~~--p~~~~ 678 (751)
.......++...|...+.+... .| ..|. ..+.+.+-..+...++++.|+++.+.+... |.+ .+..+
T Consensus 1022 al~~f~~~~~~~al~~~~ra~~l~~Ls~ge~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a~~~~v~g~~~l~~~~~ 1101 (1236)
T KOG1839|consen 1022 ALYEFAVKNLSGALKSLNRALKLKLLSSGEDHPPTALSFINLELLLLGVEEADTALRYLESALAKNKKVLGPKELETALS 1101 (1236)
T ss_pred HHHHHhccCccchhhhHHHHHHhhccccCCCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcCccchhhhhH
Confidence 5555666677778777776655 12 1343 444444444455568899999999888763 211 24556
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHH
Q 004470 679 YNALIKGFLKRKKYLEARELFEE 701 (751)
Q Consensus 679 ~~~l~~~~~~~g~~~~A~~~~~~ 701 (751)
+..+...+...+++..|....+.
T Consensus 1102 ~~~~a~l~~s~~dfr~al~~ek~ 1124 (1236)
T KOG1839|consen 1102 YHALARLFESMKDFRNALEHEKV 1124 (1236)
T ss_pred HHHHHHHHhhhHHHHHHHHHHhh
Confidence 77777777777777776655444
Done!