Query 004470
Match_columns 751
No_of_seqs 876 out of 3932
Neff 10.5
Searched_HMMs 29240
Date Tue Mar 26 02:09:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004470.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/004470hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xpi_A Anaphase-promoting comp 100.0 4.4E-41 1.5E-45 380.2 42.6 475 255-742 83-581 (597)
2 2xpi_A Anaphase-promoting comp 100.0 2.3E-40 8E-45 374.2 42.7 503 184-721 83-594 (597)
3 1w3b_A UDP-N-acetylglucosamine 100.0 1.2E-27 4E-32 254.6 47.9 382 191-584 5-386 (388)
4 1w3b_A UDP-N-acetylglucosamine 100.0 2.2E-27 7.4E-32 252.5 49.1 383 333-726 6-388 (388)
5 4g26_A Pentatricopeptide repea 100.0 1.4E-29 5E-34 273.9 25.0 204 240-443 9-222 (501)
6 4g26_A Pentatricopeptide repea 100.0 3.5E-29 1.2E-33 270.9 25.1 206 274-479 8-223 (501)
7 2gw1_A Mitochondrial precursor 99.9 2.3E-24 7.8E-29 238.2 38.3 440 257-706 7-479 (514)
8 2gw1_A Mitochondrial precursor 99.9 3.1E-24 1.1E-28 237.2 39.0 443 291-743 6-481 (514)
9 3fp2_A TPR repeat-containing p 99.9 1.7E-22 5.9E-27 224.5 38.0 432 255-706 24-492 (537)
10 2y4t_A DNAJ homolog subfamily 99.9 7.6E-22 2.6E-26 214.1 42.0 343 325-701 25-405 (450)
11 2y4t_A DNAJ homolog subfamily 99.9 5.3E-22 1.8E-26 215.3 40.2 362 345-740 11-410 (450)
12 3fp2_A TPR repeat-containing p 99.9 6.3E-22 2.2E-26 220.0 41.1 444 185-673 25-494 (537)
13 1xi4_A Clathrin heavy chain; a 99.9 8.8E-17 3E-21 183.3 63.5 430 95-584 951-1414(1630)
14 3ieg_A DNAJ homolog subfamily 99.9 7.3E-19 2.5E-23 183.9 40.7 331 360-722 2-351 (359)
15 2xm6_A Protein corresponding t 99.9 2.4E-17 8E-22 180.6 54.3 366 308-706 24-433 (490)
16 3ieg_A DNAJ homolog subfamily 99.9 9.9E-19 3.4E-23 182.8 40.8 318 396-743 3-338 (359)
17 2xm6_A Protein corresponding t 99.9 2.7E-17 9.3E-22 180.1 53.8 397 273-704 24-466 (490)
18 1xi4_A Clathrin heavy chain; a 99.9 6.3E-16 2.2E-20 176.4 63.7 421 255-735 984-1440(1630)
19 3hym_B Cell division cycle pro 99.8 1.4E-18 5E-23 179.4 31.9 293 429-728 20-322 (330)
20 2ooe_A Cleavage stimulation fa 99.8 7.6E-17 2.6E-21 178.4 46.2 432 279-742 2-494 (530)
21 2ooe_A Cleavage stimulation fa 99.8 8.6E-17 2.9E-21 178.0 45.5 428 119-600 3-492 (530)
22 3hym_B Cell division cycle pro 99.8 1E-17 3.6E-22 172.9 33.1 282 293-581 24-314 (330)
23 1fch_A Peroxisomal targeting s 99.8 2.4E-18 8.1E-23 181.0 27.1 290 444-739 38-358 (368)
24 1b89_A Protein (clathrin heavy 99.8 1.5E-17 5.1E-22 171.2 26.6 287 228-558 10-304 (449)
25 1fch_A Peroxisomal targeting s 99.8 1.6E-17 5.4E-22 174.6 27.5 256 303-563 37-312 (368)
26 4g1t_A Interferon-induced prot 99.8 2.2E-16 7.4E-21 172.2 35.8 386 325-743 50-462 (472)
27 4eqf_A PEX5-related protein; a 99.8 5.4E-18 1.8E-22 178.1 21.1 270 465-738 64-354 (365)
28 4g1t_A Interferon-induced prot 99.8 2.3E-16 7.8E-21 172.0 33.6 385 289-706 49-460 (472)
29 3cv0_A Peroxisome targeting si 99.8 8.7E-17 3E-21 165.7 26.8 267 467-740 22-315 (327)
30 3mkr_A Coatomer subunit epsilo 99.8 5.9E-16 2E-20 156.2 29.1 258 440-712 8-270 (291)
31 4eqf_A PEX5-related protein; a 99.8 5.9E-17 2E-21 170.1 22.5 233 364-600 68-310 (365)
32 1b89_A Protein (clathrin heavy 99.8 1.3E-16 4.5E-21 164.1 24.3 238 268-547 15-252 (449)
33 3cv0_A Peroxisome targeting si 99.7 3.6E-16 1.2E-20 161.0 26.5 279 398-704 23-314 (327)
34 3spa_A Mtrpol, DNA-directed RN 99.7 2.1E-18 7.2E-23 190.8 10.0 121 255-375 126-250 (1134)
35 3mkr_A Coatomer subunit epsilo 99.7 8.5E-16 2.9E-20 155.0 27.4 256 474-743 7-267 (291)
36 3spa_A Mtrpol, DNA-directed RN 99.7 7.8E-18 2.7E-22 186.3 10.0 152 289-445 125-286 (1134)
37 3e4b_A ALGK; tetratricopeptide 99.7 3.7E-15 1.3E-19 160.6 25.0 307 411-740 89-421 (452)
38 3uq3_A Heat shock protein STI1 99.7 1.6E-14 5.3E-19 143.0 26.3 226 467-741 6-237 (258)
39 2pl2_A Hypothetical conserved 99.7 1.2E-14 4.2E-19 139.8 22.8 200 533-738 2-212 (217)
40 1ouv_A Conserved hypothetical 99.6 6E-13 2E-17 133.2 34.5 224 500-741 5-252 (273)
41 2pl2_A Hypothetical conserved 99.6 8.6E-15 3E-19 140.9 20.1 195 186-387 6-211 (217)
42 3e4b_A ALGK; tetratricopeptide 99.6 2E-14 6.8E-19 154.9 25.0 381 262-704 9-420 (452)
43 3uq3_A Heat shock protein STI1 99.6 3.9E-14 1.3E-18 140.1 25.0 225 431-669 5-235 (258)
44 2h6f_A Protein farnesyltransfe 99.6 5.3E-14 1.8E-18 146.8 22.7 251 126-406 94-363 (382)
45 1ouv_A Conserved hypothetical 99.6 2.2E-12 7.4E-17 129.1 32.9 224 465-706 5-252 (273)
46 3u4t_A TPR repeat-containing p 99.6 1.4E-13 4.8E-18 137.6 23.0 247 467-718 4-262 (272)
47 2ho1_A Type 4 fimbrial biogene 99.6 5.3E-13 1.8E-17 131.6 26.7 199 539-741 40-239 (252)
48 3u4t_A TPR repeat-containing p 99.6 2.5E-13 8.5E-18 135.7 24.0 236 130-390 4-250 (272)
49 2h6f_A Protein farnesyltransfe 99.6 3.6E-13 1.2E-17 140.5 25.8 250 466-723 97-365 (382)
50 1xnf_A Lipoprotein NLPI; TPR, 99.6 9E-14 3.1E-18 139.1 19.8 246 479-734 18-269 (275)
51 2ho1_A Type 4 fimbrial biogene 99.6 1.2E-12 4.1E-17 129.1 27.3 199 503-705 39-238 (252)
52 2vq2_A PILW, putative fimbrial 99.6 1.5E-12 5.3E-17 125.5 27.2 201 501-704 8-210 (225)
53 2q7f_A YRRB protein; TPR, prot 99.6 3E-13 1E-17 132.5 22.2 201 500-705 22-222 (243)
54 2q7f_A YRRB protein; TPR, prot 99.6 2.8E-13 9.5E-18 132.7 21.8 201 536-741 23-223 (243)
55 2vq2_A PILW, putative fimbrial 99.6 3.3E-12 1.1E-16 123.2 28.4 203 535-741 7-212 (225)
56 1xnf_A Lipoprotein NLPI; TPR, 99.5 2E-13 6.8E-18 136.6 19.6 245 445-699 19-269 (275)
57 4e6h_A MRNA 3'-END-processing 99.5 1.2E-10 4.1E-15 129.5 43.0 446 271-744 47-574 (679)
58 4a1s_A PINS, partner of inscut 99.5 2.9E-13 9.8E-18 144.4 20.9 134 608-741 225-373 (411)
59 3sf4_A G-protein-signaling mod 99.5 8.5E-13 2.9E-17 140.2 22.7 307 428-735 6-371 (406)
60 3sf4_A G-protein-signaling mod 99.5 3.4E-13 1.2E-17 143.3 19.4 301 393-694 6-365 (406)
61 4e6h_A MRNA 3'-END-processing 99.5 9.9E-10 3.4E-14 122.2 47.0 220 450-672 328-572 (679)
62 3ro2_A PINS homolog, G-protein 99.5 1.1E-12 3.9E-17 135.0 22.0 269 473-742 12-334 (338)
63 4a1s_A PINS, partner of inscut 99.5 7.1E-13 2.4E-17 141.3 20.2 236 130-387 49-329 (411)
64 3vtx_A MAMA; tetratricopeptide 99.5 8.4E-12 2.9E-16 116.4 23.8 166 535-704 4-169 (184)
65 2ond_A Cleavage stimulation fa 99.5 5.5E-11 1.9E-15 121.1 31.0 186 553-742 81-272 (308)
66 3ulq_A Response regulator aspa 99.5 4.3E-12 1.5E-16 133.9 22.9 232 507-741 109-369 (383)
67 3ro2_A PINS homolog, G-protein 99.5 1.6E-12 5.6E-17 133.8 18.8 278 130-460 6-332 (338)
68 4abn_A Tetratricopeptide repea 99.4 2.5E-12 8.5E-17 139.3 20.2 212 517-734 84-315 (474)
69 3vtx_A MAMA; tetratricopeptide 99.4 2.7E-11 9.4E-16 112.8 23.4 168 570-741 4-171 (184)
70 3ulq_A Response regulator aspa 99.4 1.8E-11 6.3E-16 129.0 23.8 230 472-704 109-367 (383)
71 4abn_A Tetratricopeptide repea 99.4 3.8E-12 1.3E-16 137.9 18.9 211 110-347 83-313 (474)
72 2ond_A Cleavage stimulation fa 99.4 4.3E-11 1.5E-15 121.9 24.1 217 112-355 33-270 (308)
73 3nf1_A KLC 1, kinesin light ch 99.4 6.4E-12 2.2E-16 127.9 16.3 241 500-741 26-308 (311)
74 3q15_A PSP28, response regulat 99.4 1.2E-10 4E-15 122.5 26.1 230 507-740 107-365 (378)
75 1hz4_A MALT regulatory protein 99.4 4E-10 1.4E-14 118.2 29.2 300 435-742 18-351 (373)
76 3nf1_A KLC 1, kinesin light ch 99.4 4.5E-12 1.5E-16 129.1 13.7 180 126-319 24-223 (311)
77 3q15_A PSP28, response regulat 99.3 3.3E-10 1.1E-14 119.1 26.7 230 471-704 106-364 (378)
78 3as5_A MAMA; tetratricopeptide 99.3 1.3E-10 4.5E-15 107.8 20.4 166 573-742 10-175 (186)
79 4gyw_A UDP-N-acetylglucosamine 99.3 7.4E-11 2.5E-15 132.9 21.9 167 570-740 8-174 (723)
80 1hz4_A MALT regulatory protein 99.3 1.5E-09 5E-14 113.9 28.3 299 400-706 18-350 (373)
81 4i17_A Hypothetical protein; T 99.3 2.9E-10 9.8E-15 110.0 21.0 199 533-743 4-212 (228)
82 4gyw_A UDP-N-acetylglucosamine 99.3 9E-11 3.1E-15 132.2 19.0 168 126-319 6-173 (723)
83 3as5_A MAMA; tetratricopeptide 99.2 8.3E-10 2.8E-14 102.3 21.6 165 537-705 9-173 (186)
84 3edt_B KLC 2, kinesin light ch 99.2 9.1E-11 3.1E-15 117.4 14.0 228 512-740 12-281 (283)
85 4i17_A Hypothetical protein; T 99.2 2.2E-09 7.6E-14 103.7 22.2 208 499-719 5-222 (228)
86 3mv2_B Coatomer subunit epsilo 99.2 8.6E-09 2.9E-13 101.7 25.5 203 520-741 85-306 (310)
87 3edt_B KLC 2, kinesin light ch 99.2 3E-10 1E-14 113.5 14.5 232 108-355 14-281 (283)
88 3qky_A Outer membrane assembly 99.1 2.2E-09 7.5E-14 106.2 17.9 107 125-253 11-129 (261)
89 2fo7_A Synthetic consensus TPR 99.1 5.8E-09 2E-13 90.7 18.6 131 608-741 3-133 (136)
90 3rjv_A Putative SEL1 repeat pr 99.1 1.5E-08 5E-13 96.6 21.4 176 554-741 4-198 (212)
91 3mv2_B Coatomer subunit epsilo 99.1 9.5E-08 3.3E-12 94.3 27.1 182 485-673 85-285 (310)
92 2uy1_A Cleavage stimulation fa 99.1 4.3E-07 1.5E-11 98.1 34.7 124 608-739 288-412 (493)
93 3qou_A Protein YBBN; thioredox 99.1 2.5E-09 8.4E-14 107.4 15.9 169 125-318 113-282 (287)
94 1qqe_A Vesicular transport pro 99.0 2.7E-09 9.3E-14 107.5 16.1 92 508-599 44-146 (292)
95 2r5s_A Uncharacterized protein 99.0 1.5E-09 5E-14 100.2 12.4 163 130-318 7-171 (176)
96 3urz_A Uncharacterized protein 99.0 3.6E-09 1.2E-13 100.5 15.1 182 128-320 3-186 (208)
97 3urz_A Uncharacterized protein 99.0 1E-08 3.4E-13 97.4 17.5 191 186-403 5-197 (208)
98 3qky_A Outer membrane assembly 99.0 1.3E-08 4.6E-13 100.5 19.0 189 533-742 12-226 (261)
99 2uy1_A Cleavage stimulation fa 99.0 9.5E-07 3.3E-11 95.3 34.4 125 537-669 287-412 (493)
100 1qqe_A Vesicular transport pro 99.0 1.8E-08 6.3E-13 101.3 19.4 165 257-423 78-267 (292)
101 2yhc_A BAMD, UPF0169 lipoprote 99.0 5.9E-08 2E-12 93.4 21.9 192 535-745 3-218 (225)
102 2pzi_A Probable serine/threoni 99.0 1.8E-09 6.2E-14 122.3 12.9 151 182-338 430-580 (681)
103 2pzi_A Probable serine/threoni 99.0 4.7E-09 1.6E-13 118.9 16.1 166 217-388 429-603 (681)
104 4ga2_A E3 SUMO-protein ligase 99.0 1.5E-09 5.1E-14 97.0 9.0 116 186-305 32-148 (150)
105 2fo7_A Synthetic consensus TPR 99.0 4.8E-08 1.6E-12 84.7 18.4 130 573-705 3-132 (136)
106 3dra_A Protein farnesyltransfe 98.9 1.8E-07 6.2E-12 93.3 24.2 217 483-704 50-286 (306)
107 3qou_A Protein YBBN; thioredox 98.9 1.9E-08 6.6E-13 100.8 17.2 167 568-739 114-283 (287)
108 2r5s_A Uncharacterized protein 98.9 1.6E-08 5.6E-13 93.1 15.0 163 186-353 7-171 (176)
109 3dra_A Protein farnesyltransfe 98.9 5.3E-07 1.8E-11 89.9 26.5 223 197-425 45-287 (306)
110 3rjv_A Putative SEL1 repeat pr 98.9 1.3E-07 4.4E-12 90.0 21.1 176 519-706 4-198 (212)
111 4ga2_A E3 SUMO-protein ligase 98.9 4.6E-09 1.6E-13 93.8 10.1 146 191-341 3-149 (150)
112 2vsy_A XCC0866; transferase, g 98.9 3.6E-08 1.2E-12 109.6 19.6 164 549-717 2-168 (568)
113 2yhc_A BAMD, UPF0169 lipoprote 98.9 6.7E-08 2.3E-12 93.0 18.5 186 129-356 4-214 (225)
114 3u3w_A Transcriptional activat 98.8 5.7E-07 1.9E-11 90.4 23.9 165 577-741 81-267 (293)
115 2vsy_A XCC0866; transferase, g 98.8 4.7E-08 1.6E-12 108.7 17.1 154 108-286 2-158 (568)
116 2ifu_A Gamma-SNAP; membrane fu 98.8 4.6E-08 1.6E-12 99.2 15.1 130 573-703 78-222 (307)
117 1hh8_A P67PHOX, NCF-2, neutrop 98.8 1.5E-07 5.1E-12 89.5 17.1 124 575-704 10-149 (213)
118 3gyz_A Chaperone protein IPGC; 98.8 9.1E-08 3.1E-12 85.0 14.0 98 642-741 37-134 (151)
119 2ifu_A Gamma-SNAP; membrane fu 98.8 4.6E-08 1.6E-12 99.2 13.7 200 514-741 4-224 (307)
120 4gco_A Protein STI-1; structur 98.7 2.1E-07 7E-12 80.1 14.6 109 607-718 14-122 (126)
121 2qfc_A PLCR protein; TPR, HTH, 98.7 1.6E-06 5.4E-11 87.1 23.1 167 574-740 78-266 (293)
122 4gco_A Protein STI-1; structur 98.7 3.1E-07 1.1E-11 78.9 15.3 105 637-743 8-113 (126)
123 1a17_A Serine/threonine protei 98.7 4.6E-07 1.6E-11 81.9 16.9 130 607-739 14-145 (166)
124 4f3v_A ESX-1 secretion system 98.7 3.3E-07 1.1E-11 89.2 16.3 188 141-355 18-237 (282)
125 3q7a_A Farnesyltransferase alp 98.7 4.1E-06 1.4E-10 84.4 23.8 229 480-740 68-331 (349)
126 4f3v_A ESX-1 secretion system 98.7 1.8E-07 6.1E-12 91.1 13.4 206 107-321 18-238 (282)
127 3u3w_A Transcriptional activat 98.7 3.1E-06 1.1E-10 84.9 23.2 163 542-704 81-265 (293)
128 2vgx_A Chaperone SYCD; alterna 98.7 8.5E-08 2.9E-12 85.2 10.2 97 607-705 22-118 (148)
129 3q7a_A Farnesyltransferase alp 98.6 7.3E-06 2.5E-10 82.5 24.5 182 189-376 58-257 (349)
130 1hh8_A P67PHOX, NCF-2, neutrop 98.6 1.5E-06 5.2E-11 82.4 18.7 132 536-673 6-153 (213)
131 3gyz_A Chaperone protein IPGC; 98.6 9.8E-08 3.4E-12 84.8 9.4 102 125-250 32-133 (151)
132 1na0_A Designed protein CTPR3; 98.6 1.4E-06 4.8E-11 74.0 16.2 116 606-724 9-124 (125)
133 1p5q_A FKBP52, FK506-binding p 98.6 6.3E-07 2.1E-11 91.9 16.3 132 607-740 148-294 (336)
134 2vyi_A SGTA protein; chaperone 98.6 1.1E-06 3.8E-11 75.5 15.3 119 606-727 12-130 (131)
135 3gw4_A Uncharacterized protein 98.6 3.6E-07 1.2E-11 85.9 13.0 97 643-739 68-175 (203)
136 2e2e_A Formate-dependent nitri 98.6 3.4E-07 1.2E-11 84.1 12.3 122 582-706 21-145 (177)
137 2c2l_A CHIP, carboxy terminus 98.6 1.4E-07 4.9E-12 94.1 10.3 99 183-284 2-100 (281)
138 2c2l_A CHIP, carboxy terminus 98.6 1.6E-07 5.5E-12 93.7 10.7 96 502-599 5-100 (281)
139 2qfc_A PLCR protein; TPR, HTH, 98.6 4E-06 1.4E-10 84.1 20.9 166 538-704 77-265 (293)
140 2lni_A Stress-induced-phosphop 98.6 9.9E-07 3.4E-11 76.2 13.8 117 606-725 16-132 (133)
141 3upv_A Heat shock protein STI1 98.5 1.2E-06 4.1E-11 75.2 13.6 96 607-704 5-100 (126)
142 1a17_A Serine/threonine protei 98.5 3.1E-06 1.1E-10 76.3 17.1 130 572-704 14-145 (166)
143 2xcb_A PCRH, regulatory protei 98.5 1.1E-06 3.9E-11 77.2 13.1 97 607-705 19-115 (142)
144 3gw4_A Uncharacterized protein 98.5 1.3E-06 4.4E-11 82.1 13.6 157 140-318 3-174 (203)
145 2lni_A Stress-induced-phosphop 98.5 1.6E-06 5.3E-11 74.9 12.9 118 184-305 15-132 (133)
146 2vgx_A Chaperone SYCD; alterna 98.5 9.6E-07 3.3E-11 78.3 11.7 104 123-250 15-118 (148)
147 3sz7_A HSC70 cochaperone (SGT) 98.5 1.8E-06 6.3E-11 78.0 13.7 100 605-706 10-109 (164)
148 3q49_B STIP1 homology and U bo 98.5 3.1E-06 1.1E-10 73.6 14.7 98 605-704 8-105 (137)
149 4gcn_A Protein STI-1; structur 98.5 1.4E-06 4.7E-11 75.0 11.8 104 607-713 9-118 (127)
150 2kck_A TPR repeat; tetratricop 98.5 1.4E-06 4.8E-11 72.4 11.6 101 641-743 6-109 (112)
151 1p5q_A FKBP52, FK506-binding p 98.5 3.4E-07 1.2E-11 93.9 9.3 162 112-283 130-292 (336)
152 1hxi_A PEX5, peroxisome target 98.5 1.2E-06 4.2E-11 74.5 11.3 96 645-742 21-116 (121)
153 2xcb_A PCRH, regulatory protei 98.5 5.3E-07 1.8E-11 79.4 9.2 106 121-250 10-115 (142)
154 1na0_A Designed protein CTPR3; 98.4 8.4E-06 2.9E-10 69.1 16.3 115 571-688 9-123 (125)
155 2vyi_A SGTA protein; chaperone 98.4 2.1E-06 7.2E-11 73.6 12.5 120 184-307 11-130 (131)
156 3dss_A Geranylgeranyl transfer 98.4 0.00015 5E-09 72.7 27.4 98 482-582 90-190 (331)
157 3dss_A Geranylgeranyl transfer 98.4 0.00016 5.5E-09 72.4 27.6 137 477-617 40-190 (331)
158 1elw_A TPR1-domain of HOP; HOP 98.4 8.2E-06 2.8E-10 68.3 15.8 109 607-718 5-113 (118)
159 1elw_A TPR1-domain of HOP; HOP 98.4 4.1E-06 1.4E-10 70.2 13.7 102 640-743 3-104 (118)
160 2fbn_A 70 kDa peptidylprolyl i 98.4 4.3E-06 1.5E-10 78.3 15.1 132 609-742 41-188 (198)
161 2e2e_A Formate-dependent nitri 98.4 1.8E-06 6.3E-11 79.1 11.5 121 196-320 21-144 (177)
162 4gcn_A Protein STI-1; structur 98.4 5.6E-06 1.9E-10 71.1 13.7 101 642-743 9-115 (127)
163 2fbn_A 70 kDa peptidylprolyl i 98.4 4.2E-07 1.4E-11 85.3 6.6 146 128-282 37-183 (198)
164 3upv_A Heat shock protein STI1 98.3 3.9E-06 1.3E-10 71.8 11.6 94 188-284 7-100 (126)
165 4b4t_Q 26S proteasome regulato 98.3 2.5E-05 8.5E-10 83.2 20.5 55 509-563 12-82 (434)
166 2dba_A Smooth muscle cell asso 98.3 1.8E-05 6E-10 69.6 15.6 110 605-718 27-140 (148)
167 3sz7_A HSC70 cochaperone (SGT) 98.3 1.6E-05 5.6E-10 71.6 15.6 102 570-673 10-111 (164)
168 3q49_B STIP1 homology and U bo 98.3 8.9E-06 3.1E-10 70.6 13.0 100 640-741 8-107 (137)
169 2xev_A YBGF; tetratricopeptide 98.3 1.2E-05 4E-10 69.0 13.5 94 610-705 6-105 (129)
170 2dba_A Smooth muscle cell asso 98.3 1.6E-05 5.4E-10 69.9 14.1 103 639-743 26-131 (148)
171 2kck_A TPR repeat; tetratricop 98.3 7.5E-06 2.6E-10 67.9 11.3 100 184-285 5-106 (112)
172 1elr_A TPR2A-domain of HOP; HO 98.3 9.2E-06 3.1E-10 69.6 12.2 112 607-721 5-122 (131)
173 1elr_A TPR2A-domain of HOP; HO 98.2 8.4E-06 2.9E-10 69.8 11.8 101 641-742 4-110 (131)
174 3ro3_A PINS homolog, G-protein 98.2 5E-06 1.7E-10 74.3 10.7 134 608-741 11-159 (164)
175 2hr2_A Hypothetical protein; a 98.2 1E-05 3.4E-10 71.0 11.9 98 644-742 14-133 (159)
176 4b4t_Q 26S proteasome regulato 98.2 4.5E-05 1.5E-09 81.1 19.0 183 130-318 5-202 (434)
177 1kt0_A FKBP51, 51 kDa FK506-bi 98.2 1.2E-05 4E-10 86.2 14.2 139 570-731 267-405 (457)
178 3rkv_A Putative peptidylprolyl 98.2 1.1E-05 3.8E-10 72.6 11.6 100 606-706 11-127 (162)
179 1hxi_A PEX5, peroxisome target 98.2 8.4E-06 2.9E-10 69.2 10.1 96 187-285 19-114 (121)
180 3k9i_A BH0479 protein; putativ 98.1 3.9E-06 1.3E-10 70.8 7.3 86 619-705 3-90 (117)
181 1klx_A Cysteine rich protein B 98.1 6.8E-05 2.3E-09 65.2 15.2 111 620-741 9-127 (138)
182 3k9i_A BH0479 protein; putativ 98.1 3.5E-06 1.2E-10 71.2 6.6 90 653-743 2-93 (117)
183 1wao_1 Serine/threonine protei 98.1 6.6E-06 2.2E-10 88.6 10.2 119 614-735 14-134 (477)
184 1ihg_A Cyclophilin 40; ppiase 98.1 2.5E-05 8.4E-10 80.9 13.6 91 640-732 272-362 (370)
185 3ro3_A PINS homolog, G-protein 98.1 1.8E-05 6.3E-10 70.5 11.2 131 574-704 12-157 (164)
186 2xev_A YBGF; tetratricopeptide 98.1 4.8E-05 1.7E-09 65.0 13.0 28 187-214 41-68 (129)
187 3rkv_A Putative peptidylprolyl 98.1 2.5E-05 8.5E-10 70.2 11.4 102 571-673 11-129 (162)
188 2if4_A ATFKBP42; FKBP-like, al 98.1 7.3E-06 2.5E-10 84.0 8.5 152 571-743 179-331 (338)
189 1dce_A Protein (RAB geranylger 98.0 0.00013 4.6E-09 79.8 18.8 173 552-729 45-244 (567)
190 1kt0_A FKBP51, 51 kDa FK506-bi 98.0 3.5E-06 1.2E-10 90.3 6.0 155 113-277 252-406 (457)
191 1wao_1 Serine/threonine protei 98.0 3E-05 1E-09 83.5 12.8 115 107-245 18-134 (477)
192 2hr2_A Hypothetical protein; a 98.0 7.7E-05 2.6E-09 65.4 12.2 96 609-705 14-131 (159)
193 3n71_A Histone lysine methyltr 97.9 3.3E-05 1.1E-09 82.6 10.8 97 643-740 353-464 (490)
194 2l6j_A TPR repeat-containing p 97.9 9.9E-06 3.4E-10 67.2 5.5 95 640-736 3-103 (111)
195 1ihg_A Cyclophilin 40; ppiase 97.9 0.00013 4.3E-09 75.6 14.1 139 186-347 224-362 (370)
196 2kat_A Uncharacterized protein 97.9 6.4E-05 2.2E-09 62.9 9.8 80 624-705 3-82 (115)
197 1dce_A Protein (RAB geranylger 97.9 0.00045 1.5E-08 75.7 19.1 156 585-744 43-225 (567)
198 1klx_A Cysteine rich protein B 97.9 0.0004 1.4E-08 60.3 15.1 111 585-706 9-127 (138)
199 1na3_A Designed protein CTPR2; 97.8 0.00026 8.9E-09 55.9 11.0 83 641-725 9-91 (91)
200 2if4_A ATFKBP42; FKBP-like, al 97.7 8.3E-05 2.8E-09 76.0 9.0 148 129-284 179-327 (338)
201 3n71_A Histone lysine methyltr 97.7 0.00023 7.7E-09 76.1 12.6 123 582-704 320-463 (490)
202 1zu2_A Mitochondrial import re 97.6 8.5E-05 2.9E-09 64.9 6.8 87 617-705 13-120 (158)
203 1zu2_A Mitochondrial import re 97.6 0.00015 5.2E-09 63.3 7.5 96 110-229 17-133 (158)
204 2kat_A Uncharacterized protein 97.6 0.00039 1.3E-08 58.0 10.0 80 113-214 3-82 (115)
205 2l6j_A TPR repeat-containing p 97.5 5.4E-05 1.8E-09 62.6 4.3 64 129-214 4-67 (111)
206 3ma5_A Tetratricopeptide repea 97.5 0.00047 1.6E-08 55.8 9.1 66 639-705 5-70 (100)
207 1na3_A Designed protein CTPR2; 97.4 0.00059 2E-08 53.7 9.0 82 184-268 8-89 (91)
208 3ma5_A Tetratricopeptide repea 97.4 0.00072 2.5E-08 54.7 8.8 64 605-669 6-69 (100)
209 2kc7_A BFR218_protein; tetratr 97.2 0.00057 2E-08 55.0 6.6 84 647-740 6-90 (99)
210 3qww_A SET and MYND domain-con 97.2 0.00099 3.4E-08 69.9 9.2 87 618-704 310-410 (433)
211 3bee_A Putative YFRE protein; 97.0 0.0049 1.7E-07 48.8 9.8 67 126-214 3-72 (93)
212 3qwp_A SET and MYND domain-con 96.9 0.0032 1.1E-07 66.1 10.8 94 611-704 292-399 (429)
213 2kc7_A BFR218_protein; tetratr 96.9 0.002 6.7E-08 51.7 6.9 85 134-250 5-90 (99)
214 1pc2_A Mitochondria fission pr 96.9 0.0052 1.8E-07 53.0 9.5 83 622-705 14-100 (152)
215 3qww_A SET and MYND domain-con 96.9 0.0026 8.9E-08 66.7 9.2 87 583-669 310-410 (433)
216 3ly7_A Transcriptional activat 96.8 0.029 9.8E-07 56.4 15.4 72 255-330 276-347 (372)
217 3bee_A Putative YFRE protein; 96.8 0.0046 1.6E-07 49.0 7.7 70 182-253 3-75 (93)
218 3qwp_A SET and MYND domain-con 96.7 0.0094 3.2E-07 62.5 12.0 92 578-669 294-399 (429)
219 3ly7_A Transcriptional activat 96.6 0.036 1.2E-06 55.6 15.0 142 568-715 191-347 (372)
220 3mkq_A Coatomer beta'-subunit; 96.4 0.22 7.5E-06 57.2 22.3 103 505-634 633-735 (814)
221 2v5f_A Prolyl 4-hydroxylase su 96.2 0.027 9.3E-07 45.6 9.4 73 640-713 4-82 (104)
222 3u64_A Protein TP_0956; tetrat 96.2 0.34 1.2E-05 46.6 18.0 92 272-365 179-281 (301)
223 1wy6_A Hypothetical protein ST 96.1 0.45 1.5E-05 39.4 15.7 139 583-743 19-157 (172)
224 3mkq_A Coatomer beta'-subunit; 96.1 0.55 1.9E-05 53.8 23.5 46 512-563 663-708 (814)
225 1pc2_A Mitochondria fission pr 96.1 0.036 1.2E-06 47.7 9.8 94 115-230 18-114 (152)
226 3u64_A Protein TP_0956; tetrat 96.0 0.065 2.2E-06 51.5 12.1 106 622-737 179-295 (301)
227 1nzn_A CGI-135 protein, fissio 96.0 0.036 1.2E-06 45.9 8.9 83 658-742 18-105 (126)
228 4ady_A RPN2, 26S proteasome re 95.9 3.1 0.00011 47.2 42.6 512 185-718 70-668 (963)
229 2v5f_A Prolyl 4-hydroxylase su 95.8 0.061 2.1E-06 43.4 9.8 79 128-223 4-82 (104)
230 4ady_A RPN2, 26S proteasome re 95.0 6.2 0.00021 44.8 41.3 261 404-669 382-657 (963)
231 1wy6_A Hypothetical protein ST 94.9 1.4 4.8E-05 36.5 14.4 61 400-461 95-155 (172)
232 3mkq_B Coatomer subunit alpha; 94.8 1.5 5.2E-05 38.6 15.8 45 547-597 16-60 (177)
233 3mkq_B Coatomer subunit alpha; 94.7 1.1 3.8E-05 39.5 14.6 43 513-561 17-59 (177)
234 4h7y_A Dual specificity protei 94.5 0.4 1.4E-05 40.7 10.8 106 182-289 10-127 (161)
235 1nzn_A CGI-135 protein, fissio 94.3 0.39 1.4E-05 39.7 10.3 94 114-229 20-116 (126)
236 3lvg_A Clathrin heavy chain 1; 94.3 1.8E-05 6.1E-10 80.5 -18.8 206 182-409 51-276 (624)
237 3o48_A Mitochondria fission 1 94.2 0.28 9.7E-06 40.7 9.2 70 672-741 36-108 (134)
238 1y8m_A FIS1; mitochondria, unk 94.1 0.89 3E-05 38.3 12.0 68 638-705 36-106 (144)
239 3lvg_A Clathrin heavy chain 1; 93.4 0.0004 1.4E-08 70.8 -11.1 420 129-628 83-534 (624)
240 4h7y_A Dual specificity protei 93.2 0.38 1.3E-05 40.8 8.2 112 604-718 11-135 (161)
241 3ffl_A Anaphase-promoting comp 93.1 0.14 4.8E-06 44.4 5.7 33 709-741 120-152 (167)
242 4fhn_B Nucleoporin NUP120; pro 91.5 6 0.00021 47.1 19.3 148 181-344 838-989 (1139)
243 3ffl_A Anaphase-promoting comp 91.3 1.1 3.7E-05 38.9 9.1 129 130-285 21-151 (167)
244 1qsa_A Protein (soluble lytic 90.2 24 0.00082 38.4 33.7 48 108-159 85-132 (618)
245 4gns_B Protein CSD3, chitin bi 90.1 2.7 9.2E-05 46.8 13.3 50 687-737 348-397 (754)
246 4gns_B Protein CSD3, chitin bi 90.1 4.6 0.00016 44.9 15.2 126 262-388 254-398 (754)
247 2wpv_A GET4, UPF0363 protein Y 89.5 16 0.00056 35.6 19.5 21 720-740 197-217 (312)
248 1y8m_A FIS1; mitochondria, unk 89.5 6 0.00021 33.3 11.8 70 673-742 36-108 (144)
249 2ff4_A Probable regulatory pro 89.2 2.4 8.2E-05 43.4 11.5 78 644-722 174-256 (388)
250 4b4t_P 26S proteasome regulato 88.9 24 0.00082 36.7 22.2 50 480-529 30-84 (445)
251 3lpz_A GET4 (YOR164C homolog); 88.7 19 0.00066 35.4 21.1 191 514-739 9-215 (336)
252 2wpv_A GET4, UPF0363 protein Y 88.6 19 0.00065 35.1 19.0 87 482-583 13-104 (312)
253 3o48_A Mitochondria fission 1 88.4 3.3 0.00011 34.3 9.4 68 638-705 37-107 (134)
254 4b4t_P 26S proteasome regulato 87.9 28 0.00095 36.2 23.2 189 444-633 29-245 (445)
255 3lpz_A GET4 (YOR164C homolog); 87.4 24 0.0008 34.8 21.0 189 482-704 12-215 (336)
256 4fhn_B Nucleoporin NUP120; pro 86.3 16 0.00056 43.4 17.8 83 329-413 902-988 (1139)
257 2ff4_A Probable regulatory pro 83.0 4.8 0.00017 41.1 9.9 68 540-608 175-247 (388)
258 1zbp_A Hypothetical protein VP 80.4 10 0.00035 35.8 10.0 117 614-741 5-130 (273)
259 1v54_E Cytochrome C oxidase po 78.4 10 0.00035 29.6 7.5 46 625-670 29-74 (109)
260 1v54_E Cytochrome C oxidase po 76.4 11 0.00037 29.4 7.2 62 656-718 25-86 (109)
261 3txn_A 26S proteasome regulato 74.6 76 0.0026 32.1 24.7 24 726-749 329-352 (394)
262 4b4t_R RPN7, 26S proteasome re 74.3 14 0.00048 38.2 10.3 98 607-704 132-236 (429)
263 1zbp_A Hypothetical protein VP 70.5 73 0.0025 30.1 14.7 62 138-223 6-67 (273)
264 4b4t_R RPN7, 26S proteasome re 68.8 44 0.0015 34.4 12.6 97 538-634 133-236 (429)
265 3txn_A 26S proteasome regulato 68.0 1.1E+02 0.0036 31.0 24.4 132 186-318 20-166 (394)
266 3esl_A Checkpoint serine/threo 67.9 34 0.0012 30.7 9.7 53 657-709 95-148 (202)
267 2y69_E Cytochrome C oxidase su 67.1 28 0.00097 28.8 8.0 45 626-670 73-117 (152)
268 2y69_E Cytochrome C oxidase su 64.2 50 0.0017 27.4 8.9 60 658-718 70-129 (152)
269 2p58_C Putative type III secre 62.6 51 0.0018 25.6 8.2 48 512-565 51-98 (116)
270 3esl_A Checkpoint serine/threo 60.7 43 0.0015 30.0 8.9 66 678-744 82-148 (202)
271 4b4t_S RPN3, 26S proteasome re 59.5 30 0.001 36.3 8.9 68 185-252 231-301 (523)
272 2uwj_G Type III export protein 57.3 49 0.0017 25.7 7.3 18 548-565 80-97 (115)
273 3kae_A CDC27, possible protein 55.3 59 0.002 28.1 8.3 28 714-741 117-144 (242)
274 4a1g_A Mitotic checkpoint seri 52.6 81 0.0028 26.8 8.9 53 658-710 82-135 (152)
275 3ltm_A Alpha-REP4; protein eng 51.4 1.3E+02 0.0045 26.7 17.1 18 359-376 124-141 (211)
276 1k1a_A B-cell lymphoma 3-encod 51.0 67 0.0023 29.3 9.5 23 301-323 16-38 (241)
277 4gq2_M Nucleoporin NUP120; bet 49.5 2.6E+02 0.0089 32.2 15.7 91 180-284 835-925 (950)
278 2wvi_A Mitotic checkpoint seri 48.5 1.1E+02 0.0037 26.4 9.2 53 659-711 78-131 (164)
279 1qsa_A Protein (soluble lytic 44.8 3.3E+02 0.011 29.4 38.9 116 375-494 228-347 (618)
280 4a1g_A Mitotic checkpoint seri 42.9 64 0.0022 27.4 6.8 52 693-744 82-134 (152)
281 3eiq_C Programmed cell death p 42.7 2.4E+02 0.0083 27.9 12.1 71 644-715 220-292 (358)
282 1oyz_A Hypothetical protein YI 42.3 2.2E+02 0.0075 26.6 22.2 29 184-213 36-64 (280)
283 1wdy_A 2-5A-dependent ribonucl 42.0 53 0.0018 30.9 7.4 8 266-273 12-19 (285)
284 2d2s_A Exocyst complex compone 42.0 1.4E+02 0.0049 27.5 9.8 30 359-388 89-118 (235)
285 2nsz_A Programmed cell death p 40.5 88 0.003 25.7 7.3 63 609-672 10-74 (129)
286 2ijq_A Hypothetical protein; s 39.0 80 0.0027 27.2 6.8 52 688-739 44-103 (161)
287 2wvi_A Mitotic checkpoint seri 38.6 88 0.003 27.0 7.1 52 693-744 77-129 (164)
288 3mv2_A Coatomer subunit alpha; 37.3 2.5E+02 0.0084 27.3 10.7 136 581-748 124-264 (325)
289 1k1a_A B-cell lymphoma 3-encod 35.5 89 0.003 28.4 7.6 85 263-351 13-101 (241)
290 4aez_C MAD3, mitotic spindle c 34.7 63 0.0022 29.5 5.8 54 657-710 130-184 (223)
291 1wdy_A 2-5A-dependent ribonucl 34.6 72 0.0025 29.9 6.9 81 296-384 7-92 (285)
292 3eu9_A Huntingtin-interacting 34.6 71 0.0024 29.0 6.7 8 476-483 184-191 (240)
293 2d2s_A Exocyst complex compone 34.0 1.8E+02 0.0062 26.8 9.1 90 612-704 24-119 (235)
294 1bpo_A Protein (clathrin); cla 32.6 2.1E+02 0.0071 29.4 9.7 140 585-737 343-482 (494)
295 1ug3_A EIF4GI, eukaryotic prot 31.1 2.1E+02 0.0073 28.0 9.8 25 260-284 15-39 (339)
296 2ion_A PDCD4, programmed cell 30.7 90 0.0031 26.5 5.9 64 609-673 12-77 (152)
297 2nsz_A Programmed cell death p 30.2 1.6E+02 0.0054 24.1 7.2 24 365-388 11-34 (129)
298 2zu6_B Programmed cell death p 27.5 2.1E+02 0.0073 27.6 8.7 25 469-493 6-30 (307)
299 4aez_C MAD3, mitotic spindle c 27.0 1.5E+02 0.0052 27.0 7.0 51 624-674 132-183 (223)
300 3eiq_C Programmed cell death p 26.9 4.7E+02 0.016 25.8 13.4 26 187-212 56-81 (358)
301 2uwj_G Type III export protein 26.7 2.3E+02 0.0077 22.1 8.9 77 111-215 22-98 (115)
302 2p58_C Putative type III secre 25.4 2.4E+02 0.0083 22.0 9.6 43 111-154 23-65 (116)
303 3kea_A K1L; tropism, ANK repea 25.3 89 0.003 29.7 5.7 17 369-385 166-182 (285)
304 3eu9_A Huntingtin-interacting 25.3 1.1E+02 0.0038 27.6 6.3 11 234-244 52-62 (240)
305 3jxi_A Vanilloid receptor-rela 25.3 33 0.0011 32.1 2.5 25 266-290 12-36 (260)
306 3kea_A K1L; tropism, ANK repea 24.6 1.4E+02 0.0046 28.4 6.9 8 372-379 103-110 (285)
307 4gq2_M Nucleoporin NUP120; bet 24.4 5.6E+02 0.019 29.4 12.9 28 678-705 899-926 (950)
308 3jxi_A Vanilloid receptor-rela 24.0 35 0.0012 31.9 2.4 56 298-353 9-73 (260)
309 2zu6_B Programmed cell death p 23.4 3.9E+02 0.013 25.8 9.6 25 224-249 7-31 (307)
310 4g8k_A 2-5A-dependent ribonucl 23.0 3.3E+02 0.011 26.2 9.7 12 629-640 317-328 (337)
311 4b4t_S RPN3, 26S proteasome re 22.9 1.5E+02 0.005 31.2 6.8 63 641-705 231-299 (523)
312 3mkr_B Coatomer subunit alpha; 22.8 5.3E+02 0.018 24.9 10.2 136 581-748 112-255 (320)
313 2ion_A PDCD4, programmed cell 22.6 1.5E+02 0.0052 25.1 5.9 24 365-388 13-36 (152)
314 1oyz_A Hypothetical protein YI 22.5 4.6E+02 0.016 24.2 24.1 18 359-376 140-157 (280)
315 3pvs_A Replication-associated 22.0 6.5E+02 0.022 25.7 12.8 137 551-707 166-326 (447)
316 3t8k_A Uncharacterized protein 21.9 2.3E+02 0.0079 24.6 7.4 64 297-360 41-108 (186)
317 2ijq_A Hypothetical protein; s 21.3 3.9E+02 0.013 22.9 8.4 53 547-599 43-103 (161)
318 3ltm_A Alpha-REP4; protein eng 21.2 4.2E+02 0.014 23.2 18.5 17 360-376 32-48 (211)
319 2r9g_A AAA ATPase, central reg 21.2 4.4E+02 0.015 23.5 9.9 16 481-496 29-44 (204)
320 2xig_A Ferric uptake regulatio 20.9 3.4E+02 0.012 22.7 7.8 34 480-513 40-73 (150)
321 3bu8_A Telomeric repeat-bindin 20.9 3.8E+02 0.013 24.2 7.9 40 190-231 119-158 (235)
322 2cwy_A Hypothetical protein TT 20.6 1.4E+02 0.0048 22.8 4.7 51 687-739 12-67 (94)
323 3hra_A Ankyrin repeat family p 20.5 1.3E+02 0.0044 26.3 5.5 13 372-384 80-92 (201)
324 2xig_A Ferric uptake regulatio 20.3 2.9E+02 0.01 23.1 7.3 38 653-690 38-75 (150)
325 3pvs_A Replication-associated 20.2 7E+02 0.024 25.4 13.4 138 516-672 166-326 (447)
No 1
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=4.4e-41 Score=380.19 Aligned_cols=475 Identities=11% Similarity=0.029 Sum_probs=294.8
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHH
Q 004470 255 NTASYNIMIHCLCRFGKIKEAHLLLLQMELRGCSPDVVSFSTIINGYCYLGELQRVLKLIEEMQIKGLKPNPYTYNSVVR 334 (751)
Q Consensus 255 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~ 334 (751)
++..|+.++..|.+.|++++|+.+|++|... .|+..++..++..|.+.|++++|..+|+++... +++..+++.++.
T Consensus 83 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~ 158 (597)
T 2xpi_A 83 REDYLRLWRHDALMQQQYKCAAFVGEKVLDI--TGNPNDAFWLAQVYCCTGDYARAKCLLTKEDLY--NRSSACRYLAAF 158 (597)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCGG--GTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccCchHHHHHHHHHHhh--CCCchHHHHHHHHHHHcCcHHHHHHHHHHHhcc--ccchhHHHHHHH
Confidence 4444555555555555555555555554432 234444555555555555555555555544322 334445555555
Q ss_pred HHHhcCCHHHHHHHHHHHHH---------------CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHH
Q 004470 335 LLCKTSKVVEAETILREMMN---------------QGIVPDNVIYTTLIDGFCKMGNVAAAYRLFDEMRGLNIIPDLLTY 399 (751)
Q Consensus 335 ~~~~~g~~~~A~~~~~~m~~---------------~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~ 399 (751)
+|.+.|++++|.++|+++.. .|.+++..+|+.++.+|.+.|++++|.++|++|.+.++. +...+
T Consensus 159 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~ 237 (597)
T 2xpi_A 159 CLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAK-CYEAF 237 (597)
T ss_dssp HHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHH
T ss_pred HHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCch-hhHHH
Confidence 55555555555555543211 122345667777777777777777777777777665432 44455
Q ss_pred HHHHHHHHhcCCHHHHHH--H-HHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 004470 400 TAIICGFCLTGKMVEAEK--L-FHEMLGRGLEPDEIVYTALIDGYCKAGGMKKAFSLHNNMVHMRLTPNVVTYTALADGL 476 (751)
Q Consensus 400 ~~li~~~~~~g~~~~A~~--~-~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~ 476 (751)
..+...+...+..+.+.. + +..+...+..+...+|+.++..|.+.|++++|.++|+++.+. +++..+++.++.+|
T Consensus 238 ~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~ 315 (597)
T 2xpi_A 238 DQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGL--EKSSDLLLCKADTL 315 (597)
T ss_dssp HHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTG--GGCHHHHHHHHHHH
T ss_pred HHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcC--CchHHHHHHHHHHH
Confidence 555444333322222111 1 333443333334455666666777777777777777776654 35677777777777
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 004470 477 CKSGELETANELLHEMCRKGLQLNIYTYNSIVNGLCKAGNILQAVKLMEDMEVAGFHPDTFTYTTIMDAYCKSGEMVKAH 556 (751)
Q Consensus 477 ~~~g~~~~A~~l~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 556 (751)
.+.|++++|.++|+++.+.+.. +..++..++.++.+.|++++|..+++++.+.. +.+..+++.++..|.+.|++++|.
T Consensus 316 ~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~ 393 (597)
T 2xpi_A 316 FVRSRFIDVLAITTKILEIDPY-NLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEKAVTWLAVGIYYLCVNKISEAR 393 (597)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTT-CCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHhcCHHHHHHHHHHHHHcCcc-cHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHhccHHHHH
Confidence 7777777777777777665433 55667777777777777777777777776543 456677777777777777777777
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCC
Q 004470 557 ELLRDMLDKGLQPSVVTFNVLMNGFCMSGMIEDGEKLLKWMLEKGLKPNAATYNPLIKQHCLRNDMRTTAKIYKGMCAQG 636 (751)
Q Consensus 557 ~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 636 (751)
++|+++.+.. +.+..+|+.++.+|.+.|++++|.++|+++.+.+ +.+..+|..++.+|.+.|++++|.++|+++.+..
T Consensus 394 ~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 471 (597)
T 2xpi_A 394 RYFSKSSTMD-PQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLFLGMQHMQLGNILLANEYLQSSYALF 471 (597)
T ss_dssp HHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 7777776542 3456677777777777777777777777776653 2356667777777777777777777777776643
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 004470 637 ITPDGNTYNILLQGHCKARNMKEAWFLHKEMVQK----GFNLT--TSSYNALIKGFLKRKKYLEARELFEEMRRGGLVAD 710 (751)
Q Consensus 637 ~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 710 (751)
+.+..+|+.++..|.+.|++++|+++|+++.+. +..|+ ..+|..++.+|.+.|++++|.+.++++.+.+ +.+
T Consensus 472 -~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~ 549 (597)
T 2xpi_A 472 -QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLS-TND 549 (597)
T ss_dssp -CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SCC
T ss_pred -CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCC
Confidence 335667777777777777777777777777664 44555 5677777777777777777777777777654 456
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHcCC
Q 004470 711 REIYYFFVDINFEEGNTEITLELCDAAIECYL 742 (751)
Q Consensus 711 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 742 (751)
..+|..++.+|.+.|++++|.+.++++++...
T Consensus 550 ~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p 581 (597)
T 2xpi_A 550 ANVHTAIALVYLHKKIPGLAITHLHESLAISP 581 (597)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred hHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCC
Confidence 67777777777777777777777777776543
No 2
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=2.3e-40 Score=374.23 Aligned_cols=503 Identities=12% Similarity=0.012 Sum_probs=334.3
Q ss_pred ChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCccCHHhHHHHHHHHHhCCCCHHHHHHHHHhchhcCCCcCHHHHHHHH
Q 004470 184 DPHVFDIFFQVLVEARKLNEARKLFEKLLNYGLVISVDSCNLFLSRLSNTCDGLRMVVKSFTEFPELGICWNTASYNIMI 263 (751)
Q Consensus 184 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li 263 (751)
++..|..++..|.+.|++++|+.+|++|... .|+..++..+...+. ..|++++|..+|+++... .+++.+++.++
T Consensus 83 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~l~~~~~-~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~ 157 (597)
T 2xpi_A 83 REDYLRLWRHDALMQQQYKCAAFVGEKVLDI--TGNPNDAFWLAQVYC-CTGDYARAKCLLTKEDLY--NRSSACRYLAA 157 (597)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HCCHHHHHHHHHHHH-HTTCHHHHHHHHHHTCGG--GTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccCchHHHHHHHHHHhh--CCCchHHHHHHHHHH-HcCcHHHHHHHHHHHhcc--ccchhHHHHHH
Confidence 4456777888888888888888888887754 566666665555554 567777777777777543 45677777777
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCHH
Q 004470 264 HCLCRFGKIKEAHLLLLQMELRGCSPDVVSFSTIINGYCYLGELQRVLKLIEEMQIKGLKPNPYTYNSVVRLLCKTSKVV 343 (751)
Q Consensus 264 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~ 343 (751)
.+|++.|++++|+++|+++.... .. ..++.+.++ ...|.+++..+|+.++.+|.+.|+++
T Consensus 158 ~~~~~~g~~~~A~~~~~~~~~~~----~~-----~~~~~~~~~-----------~~~~~~~~~~~~~~l~~~~~~~g~~~ 217 (597)
T 2xpi_A 158 FCLVKLYDWQGALNLLGETNPFR----KD-----EKNANKLLM-----------QDGGIKLEASMCYLRGQVYTNLSNFD 217 (597)
T ss_dssp HHHHHTTCHHHHHHHHCSSCTTC-------------------C-----------CCSSCCHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHhhHHHHHHHHhccCCcc----cc-----ccccccccc-----------cccccchhHHHHHHHHHHHHHcCCHH
Confidence 77777777777777777422111 00 000000000 01123344556666666666666666
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHH--HH-HHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 004470 344 EAETILREMMNQGIVPDNVIYTTLIDGFCKMGNVAAAY--RL-FDEMRGLNIIPDLLTYTAIICGFCLTGKMVEAEKLFH 420 (751)
Q Consensus 344 ~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~--~~-~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 420 (751)
+|.++|++|.+.+ +.+...+..+...+...++.+.+. .+ +..+...+..+...+|+.++..|.+.|++++|.++|+
T Consensus 218 ~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~ 296 (597)
T 2xpi_A 218 RAKECYKEALMVD-AKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLS 296 (597)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-chhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHH
Confidence 6666666666543 223444444444333222222111 11 3334443333344555666666777777777777777
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC
Q 004470 421 EMLGRGLEPDEIVYTALIDGYCKAGGMKKAFSLHNNMVHMRLTPNVVTYTALADGLCKSGELETANELLHEMCRKGLQLN 500 (751)
Q Consensus 421 ~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~ 500 (751)
++.+. +++..+++.++.+|.+.|++++|..+|+++.+.++. +..++..++.++.+.|++++|.++++++.+.. +.+
T Consensus 297 ~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~ 372 (597)
T 2xpi_A 297 SINGL--EKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPY-NLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEK 372 (597)
T ss_dssp TSTTG--GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTS
T ss_pred HhhcC--CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcCcc-cHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-ccc
Confidence 76654 456777777777777777777777777777665533 56667777777777777777777777776553 336
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 004470 501 IYTYNSIVNGLCKAGNILQAVKLMEDMEVAGFHPDTFTYTTIMDAYCKSGEMVKAHELLRDMLDKGLQPSVVTFNVLMNG 580 (751)
Q Consensus 501 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~ 580 (751)
..+++.++..|.+.|++++|.++|+++.+.. +.+..+|+.++.+|.+.|++++|.++|+++.+.+ +.+..+|+.++.+
T Consensus 373 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~ 450 (597)
T 2xpi_A 373 AVTWLAVGIYYLCVNKISEARRYFSKSSTMD-PQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLFLGMQ 450 (597)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHH
Confidence 6677777777777777777777777776653 4556777777777777777777777777777654 4467777777777
Q ss_pred HHhcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHC----CCCCC--HHHHHHHHHHHHhc
Q 004470 581 FCMSGMIEDGEKLLKWMLEKGLKPNAATYNPLIKQHCLRNDMRTTAKIYKGMCAQ----GITPD--GNTYNILLQGHCKA 654 (751)
Q Consensus 581 ~~~~g~~~~A~~l~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~----g~~p~--~~~~~~li~~~~~~ 654 (751)
|.+.|++++|.++|+++.+.. +.+..+|+.++..|.+.|++++|.++|+++.+. +..|+ ..+|..++.+|.+.
T Consensus 451 ~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~ 529 (597)
T 2xpi_A 451 HMQLGNILLANEYLQSSYALF-QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKL 529 (597)
T ss_dssp HHHHTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHT
T ss_pred HHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHh
Confidence 888888888888888777653 236677778888888888888888888877764 55666 67888888888888
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 004470 655 RNMKEAWFLHKEMVQKGFNLTTSSYNALIKGFLKRKKYLEARELFEEMRRGGLVADREIYYFFVDIN 721 (751)
Q Consensus 655 g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 721 (751)
|++++|.+.++++.+.++. +..+|..++.+|.+.|++++|.+.|+++++.. +.+...+..++.+|
T Consensus 530 g~~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~ 594 (597)
T 2xpi_A 530 KMYDAAIDALNQGLLLSTN-DANVHTAIALVYLHKKIPGLAITHLHESLAIS-PNEIMASDLLKRAL 594 (597)
T ss_dssp TCHHHHHHHHHHHHHHSSC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHTT
T ss_pred cCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC-CCChHHHHHHHHHH
Confidence 8888888888888877543 77888888888888888888888888888764 45666676666554
No 3
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.97 E-value=1.2e-27 Score=254.57 Aligned_cols=382 Identities=14% Similarity=0.070 Sum_probs=268.9
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCCCccCHHhHHHHHHHHHhCCCCHHHHHHHHHhchhcCCCcCHHHHHHHHHHHHhcC
Q 004470 191 FFQVLVEARKLNEARKLFEKLLNYGLVISVDSCNLFLSRLSNTCDGLRMVVKSFTEFPELGICWNTASYNIMIHCLCRFG 270 (751)
Q Consensus 191 l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 270 (751)
++..+.+.|++++|.+.+.++.+. .|+...+...++.+....|++++|...++.+.+..+. +..+|..+...|.+.|
T Consensus 5 ~a~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p~-~~~~~~~lg~~~~~~g 81 (388)
T 1w3b_A 5 LAHREYQAGDFEAAERHCMQLWRQ--EPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPL-LAEAYSNLGNVYKERG 81 (388)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHT
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHHCC
Confidence 567788999999999999998877 6877777777887777889999999999888887544 7888999999999999
Q ss_pred CHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCHHHHHHHHH
Q 004470 271 KIKEAHLLLLQMELRGCSPDVVSFSTIINGYCYLGELQRVLKLIEEMQIKGLKPNPYTYNSVVRLLCKTSKVVEAETILR 350 (751)
Q Consensus 271 ~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 350 (751)
++++|+..|+++..... .+..+|..+...+.+.|++++|.+.++++.+.. +.+...+..+...+...|++++|.+.|+
T Consensus 82 ~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 159 (388)
T 1w3b_A 82 QLQEAIEHYRHALRLKP-DFIDGYINLAAALVAAGDMEGAVQAYVSALQYN-PDLYCVRSDLGNLLKALGRLEEAKACYL 159 (388)
T ss_dssp CHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC-TTCTHHHHHHHHHHHTTSCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCc-chHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHH
Confidence 99999999998877532 356678888888888888888888888888763 2245556677777778888888888888
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 004470 351 EMMNQGIVPDNVIYTTLIDGFCKMGNVAAAYRLFDEMRGLNIIPDLLTYTAIICGFCLTGKMVEAEKLFHEMLGRGLEPD 430 (751)
Q Consensus 351 ~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~ 430 (751)
++.+.. +.+..+|..+...+.+.|++++|...|+++.+.++. +...|..+...+...|++++|+..+++.+... +.+
T Consensus 160 ~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~ 236 (388)
T 1w3b_A 160 KAIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPN-FLDAYINLGNVLKEARIFDRAVAAYLRALSLS-PNH 236 (388)
T ss_dssp HHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-TTC
T ss_pred HHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCC
Confidence 887753 335677777777888888888888888877765433 45666677777777777777777777766542 224
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 004470 431 EIVYTALIDGYCKAGGMKKAFSLHNNMVHMRLTPNVVTYTALADGLCKSGELETANELLHEMCRKGLQLNIYTYNSIVNG 510 (751)
Q Consensus 431 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~~~~li~~ 510 (751)
..++..+...+.+.|++++|...++++.+..+. +..+|..++..+.+.|++++|.+.++++.+.. +.+..++..+...
T Consensus 237 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~ 314 (388)
T 1w3b_A 237 AVVHGNLACVYYEQGLIDLAIDTYRRAIELQPH-FPDAYCNLANALKEKGSVAEAEDCYNTALRLC-PTHADSLNNLANI 314 (388)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSS-CHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHH
Confidence 566666667777777777777777776665432 45566666666666666666666666666553 3355566666666
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 004470 511 LCKAGNILQAVKLMEDMEVAGFHPDTFTYTTIMDAYCKSGEMVKAHELLRDMLDKGLQPSVVTFNVLMNGFCMS 584 (751)
Q Consensus 511 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~ 584 (751)
+.+.|++++|...++++.+.. +.+..++..+...|.+.|++++|...|+++.+.. +.+...|..+...+...
T Consensus 315 ~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~-p~~~~a~~~lg~~~~~~ 386 (388)
T 1w3b_A 315 KREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS-PTFADAYSNMGNTLKEM 386 (388)
T ss_dssp HHTTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHT
T ss_pred HHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHhHHHHHHHc
Confidence 666666666666666665543 3445566666666666666666666666665542 33444555555544443
No 4
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.97 E-value=2.2e-27 Score=252.48 Aligned_cols=383 Identities=13% Similarity=0.040 Sum_probs=278.1
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH
Q 004470 333 VRLLCKTSKVVEAETILREMMNQGIVPDNVIYTTLIDGFCKMGNVAAAYRLFDEMRGLNIIPDLLTYTAIICGFCLTGKM 412 (751)
Q Consensus 333 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~ 412 (751)
...+.+.|++++|.+.++.+.+.. +.+...+..+...+.+.|++++|...++...+..+ .+..+|..+...+.+.|++
T Consensus 6 a~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p-~~~~~~~~lg~~~~~~g~~ 83 (388)
T 1w3b_A 6 AHREYQAGDFEAAERHCMQLWRQE-PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNP-LLAEAYSNLGNVYKERGQL 83 (388)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CchHHHHHHHHHHHHCCCH
Confidence 445566677777777776666652 33445555666666777777777777776665543 2566777777777777777
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 004470 413 VEAEKLFHEMLGRGLEPDEIVYTALIDGYCKAGGMKKAFSLHNNMVHMRLTPNVVTYTALADGLCKSGELETANELLHEM 492 (751)
Q Consensus 413 ~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m 492 (751)
++|++.|++++... +.+..++..++..+.+.|++++|...++++.+..+. +...+..+...+...|++++|.+.|+++
T Consensus 84 ~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~a 161 (388)
T 1w3b_A 84 QEAIEHYRHALRLK-PDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPD-LYCVRSDLGNLLKALGRLEEAKACYLKA 161 (388)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTT-CTHHHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcC-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 77777777776642 224556777777777777777777777777765432 4456666777777778888888888777
Q ss_pred HHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHH
Q 004470 493 CRKGLQLNIYTYNSIVNGLCKAGNILQAVKLMEDMEVAGFHPDTFTYTTIMDAYCKSGEMVKAHELLRDMLDKGLQPSVV 572 (751)
Q Consensus 493 ~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~ 572 (751)
.+..+ .+..+|..+...+...|++++|...|+++.+.+ +.+...+..+...+...|++++|...+++..+.. +.+..
T Consensus 162 l~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~ 238 (388)
T 1w3b_A 162 IETQP-NFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLS-PNHAV 238 (388)
T ss_dssp HHHCT-TCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-TTCHH
T ss_pred HHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCCHH
Confidence 76643 256777777778888888888888888877765 4556777777888888888888888888777653 44677
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 004470 573 TFNVLMNGFCMSGMIEDGEKLLKWMLEKGLKPNAATYNPLIKQHCLRNDMRTTAKIYKGMCAQGITPDGNTYNILLQGHC 652 (751)
Q Consensus 573 ~~~~li~~~~~~g~~~~A~~l~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~ 652 (751)
++..+...+...|++++|.+.++++.+... .+..+|..+...+...|++++|.+.++++++.. +.+..++..++..+.
T Consensus 239 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~ 316 (388)
T 1w3b_A 239 VHGNLACVYYEQGLIDLAIDTYRRAIELQP-HFPDAYCNLANALKEKGSVAEAEDCYNTALRLC-PTHADSLNNLANIKR 316 (388)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCS-SCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHH
Confidence 788888888888888888888888877532 245677888888888888888888888888753 456778888888888
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 004470 653 KARNMKEAWFLHKEMVQKGFNLTTSSYNALIKGFLKRKKYLEARELFEEMRRGGLVADREIYYFFVDINFEEGN 726 (751)
Q Consensus 653 ~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 726 (751)
+.|++++|+..++++++..+. +..++..++.+|.+.|++++|...++++++.. +.+...|..++..+.+.|+
T Consensus 317 ~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~-p~~~~a~~~lg~~~~~~~~ 388 (388)
T 1w3b_A 317 EQGNIEEAVRLYRKALEVFPE-FAAAHSNLASVLQQQGKLQEALMHYKEAIRIS-PTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp TTTCHHHHHHHHHHHTTSCTT-CHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTCC
T ss_pred HcCCHHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHhHHHHHHHccC
Confidence 888888888888888876433 67788888888888888888888888888753 4567777777777776653
No 5
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.97 E-value=1.4e-29 Score=273.93 Aligned_cols=204 Identities=16% Similarity=0.186 Sum_probs=151.7
Q ss_pred HHHHHHhchhcCCCcCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCC---------HHH
Q 004470 240 VVKSFTEFPELGICWNT-ASYNIMIHCLCRFGKIKEAHLLLLQMELRGCSPDVVSFSTIINGYCYLGE---------LQR 309 (751)
Q Consensus 240 a~~~~~~~~~~~~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~---------~~~ 309 (751)
+..+.+++.+.+..+.+ ..++.+|++|+|.|++++|+++|++|.+.|+.||.+|||+||.+|++.+. +++
T Consensus 9 ~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~ 88 (501)
T 4g26_A 9 SENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSR 88 (501)
T ss_dssp ---------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHH
T ss_pred HHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHH
Confidence 44444555555554333 35777888888888888888888888888888888888888888887654 567
Q ss_pred HHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 004470 310 VLKLIEEMQIKGLKPNPYTYNSVVRLLCKTSKVVEAETILREMMNQGIVPDNVIYTTLIDGFCKMGNVAAAYRLFDEMRG 389 (751)
Q Consensus 310 A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 389 (751)
|.++|++|.+.|+.||..||+.+|.+|++.|++++|.++|++|.+.|+.||..+|++||.+|++.|++++|.++|++|.+
T Consensus 89 A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~ 168 (501)
T 4g26_A 89 GFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVE 168 (501)
T ss_dssp HHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 77788888877888888888888888888888888888888888777778888888888888888888888888888877
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q 004470 390 LNIIPDLLTYTAIICGFCLTGKMVEAEKLFHEMLGRGLEPDEIVYTALIDGYCK 443 (751)
Q Consensus 390 ~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~ 443 (751)
.|+.||..+|+.||.+|++.|++++|.+++++|.+.|..|+..||+.++..|+.
T Consensus 169 ~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s 222 (501)
T 4g26_A 169 SEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKS 222 (501)
T ss_dssp TTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHS
T ss_pred cCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhc
Confidence 788888888888888888888888888888888777777888888777777765
No 6
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.97 E-value=3.5e-29 Score=270.94 Aligned_cols=206 Identities=16% Similarity=0.270 Sum_probs=169.7
Q ss_pred HHHHHHHHHHhcCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCC---------HH
Q 004470 274 EAHLLLLQMELRGCSPDV-VSFSTIINGYCYLGELQRVLKLIEEMQIKGLKPNPYTYNSVVRLLCKTSK---------VV 343 (751)
Q Consensus 274 ~A~~~~~~m~~~g~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~---------~~ 343 (751)
.+..+.+++.+++..+.+ ..++.+|++|++.|++++|+++|++|.+.|++||..||+.||.+|++.+. ++
T Consensus 8 ~~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~ 87 (501)
T 4g26_A 8 PSENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLS 87 (501)
T ss_dssp ----------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHH
T ss_pred hHHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHH
Confidence 345566677777665544 35788899999999999999999999999999999999999999987654 67
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 004470 344 EAETILREMMNQGIVPDNVIYTTLIDGFCKMGNVAAAYRLFDEMRGLNIIPDLLTYTAIICGFCLTGKMVEAEKLFHEML 423 (751)
Q Consensus 344 ~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 423 (751)
+|.++|++|...|+.||..+|++||.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.
T Consensus 88 ~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~ 167 (501)
T 4g26_A 88 RGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMV 167 (501)
T ss_dssp HHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHH
Confidence 88899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 004470 424 GRGLEPDEIVYTALIDGYCKAGGMKKAFSLHNNMVHMRLTPNVVTYTALADGLCKS 479 (751)
Q Consensus 424 ~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 479 (751)
+.|+.||..+|++||.+|++.|++++|.+++++|.+.|..|+..||+.++..|+..
T Consensus 168 ~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 168 ESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp HTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSH
T ss_pred hcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999888889999999888888764
No 7
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.94 E-value=2.3e-24 Score=238.19 Aligned_cols=440 Identities=10% Similarity=-0.047 Sum_probs=267.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHH
Q 004470 257 ASYNIMIHCLCRFGKIKEAHLLLLQMELRGCSPDVVSFSTIINGYCYLGELQRVLKLIEEMQIKGLKPNPYTYNSVVRLL 336 (751)
Q Consensus 257 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~ 336 (751)
..+..+...+.+.|++++|+..|+++...+ |+..+|..+...+.+.|++++|++.++++.+.+ +.+..++..+..++
T Consensus 7 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~ 83 (514)
T 2gw1_A 7 LALKDKGNQFFRNKKYDDAIKYYNWALELK--EDPVFYSNLSACYVSVGDLKKVVEMSTKALELK-PDYSKVLLRRASAN 83 (514)
T ss_dssp HHHHHHHHHHHHTSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhcC--ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC-hHHHHHHHHHHHHH
Confidence 445556666777777777777777766654 566777777777777777777777777776653 23455666777777
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 004470 337 CKTSKVVEAETILREMMNQGIVPDNVIYTTLIDGFCKMGNVAAAYRLFDEMRGLNIIPDLLTYTAIICGFCLTGKMVEAE 416 (751)
Q Consensus 337 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~ 416 (751)
.+.|++++|...|+++...+ +++......++..+.+......+.+.+..+...+..|+...+..-..............
T Consensus 84 ~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (514)
T 2gw1_A 84 EGLGKFADAMFDLSVLSLNG-DFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVT 162 (514)
T ss_dssp HHTTCHHHHHHHHHHHHHSS-SCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHH
T ss_pred HHHhhHHHHHHHHHHHHhcC-CCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhH
Confidence 77777777777777776664 23444444444444444333344333333322222222111111100000000000000
Q ss_pred HHHHHHHHCCC---------CCCHHHHHHHHHHHHH---cCChhHHHHHHHHHHh-----C--CC------CCCHHHHHH
Q 004470 417 KLFHEMLGRGL---------EPDEIVYTALIDGYCK---AGGMKKAFSLHNNMVH-----M--RL------TPNVVTYTA 471 (751)
Q Consensus 417 ~~~~~m~~~~~---------~p~~~~~~~li~~~~~---~g~~~~A~~~~~~~~~-----~--~~------~~~~~~~~~ 471 (751)
.+...+..... +.+...+......+.. .|++++|...++++.+ . .+ +.+..++..
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (514)
T 2gw1_A 163 SMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEH 242 (514)
T ss_dssp HHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHH
Confidence 11111100000 1123344444444443 6777777777777766 2 11 123456667
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC
Q 004470 472 LADGLCKSGELETANELLHEMCRKGLQLNIYTYNSIVNGLCKAGNILQAVKLMEDMEVAGFHPDTFTYTTIMDAYCKSGE 551 (751)
Q Consensus 472 li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 551 (751)
+...+...|++++|...++++.+.... ...+..+...+...|++++|...++++.... +.+...+..+...+...|+
T Consensus 243 ~~~~~~~~~~~~~A~~~~~~~l~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~ 319 (514)
T 2gw1_A 243 TGIFKFLKNDPLGAHEDIKKAIELFPR--VNSYIYMALIMADRNDSTEYYNYFDKALKLD-SNNSSVYYHRGQMNFILQN 319 (514)
T ss_dssp HHHHHHHSSCHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTC-TTCTHHHHHHHHHHHHTTC
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhhCcc--HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcC-cCCHHHHHHHHHHHHHhCC
Confidence 777777778888888888777776433 6677777777777888888888887777654 4566677777777788888
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHH
Q 004470 552 MVKAHELLRDMLDKGLQPSVVTFNVLMNGFCMSGMIEDGEKLLKWMLEKGLKPNAATYNPLIKQHCLRNDMRTTAKIYKG 631 (751)
Q Consensus 552 ~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 631 (751)
+++|...++++.+.. +.+...+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|.+.+++
T Consensus 320 ~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~ 397 (514)
T 2gw1_A 320 YDQAGKDFDKAKELD-PENIFPYIQLACLAYRENKFDDCETLFSEAKRKF-PEAPEVPNFFAEILTDKNDFDKALKQYDL 397 (514)
T ss_dssp TTHHHHHHHHHHHTC-SSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc-ccCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 888888888777654 3456677777777777888888888888777653 22456677777777888888888888877
Q ss_pred HHHCCCC-CC----HHHHHHHHHHHHh---cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 004470 632 MCAQGIT-PD----GNTYNILLQGHCK---ARNMKEAWFLHKEMVQKGFNLTTSSYNALIKGFLKRKKYLEARELFEEMR 703 (751)
Q Consensus 632 m~~~g~~-p~----~~~~~~li~~~~~---~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 703 (751)
+.+.... ++ ...+..++..+.. .|++++|...++++++..+. +..++..++..|.+.|++++|...+++++
T Consensus 398 a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~a~ 476 (514)
T 2gw1_A 398 AIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPR-SEQAKIGLAQMKLQQEDIDEAITLFEESA 476 (514)
T ss_dssp HHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 7663211 11 3367777777877 78888888888888776543 66777788888888888888888888887
Q ss_pred HCC
Q 004470 704 RGG 706 (751)
Q Consensus 704 ~~~ 706 (751)
+..
T Consensus 477 ~~~ 479 (514)
T 2gw1_A 477 DLA 479 (514)
T ss_dssp HHC
T ss_pred Hhc
Confidence 753
No 8
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.94 E-value=3.1e-24 Score=237.17 Aligned_cols=443 Identities=8% Similarity=-0.002 Sum_probs=335.1
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 004470 291 VVSFSTIINGYCYLGELQRVLKLIEEMQIKGLKPNPYTYNSVVRLLCKTSKVVEAETILREMMNQGIVPDNVIYTTLIDG 370 (751)
Q Consensus 291 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~ 370 (751)
...+......+.+.|++++|++.|+++.+.+ |+..+|..+..++.+.|++++|.+.++++++.+ +.+..++..+...
T Consensus 6 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~ 82 (514)
T 2gw1_A 6 ALALKDKGNQFFRNKKYDDAIKYYNWALELK--EDPVFYSNLSACYVSVGDLKKVVEMSTKALELK-PDYSKVLLRRASA 82 (514)
T ss_dssp HHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhcC--ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC-hHHHHHHHHHHHH
Confidence 4567778888999999999999999999875 688999999999999999999999999998874 4567889999999
Q ss_pred HHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHH
Q 004470 371 FCKMGNVAAAYRLFDEMRGLNIIPDLLTYTAIICGFCLTGKMVEAEKLFHEMLGRGLEPDEIVYTALIDGYCKAGGMKKA 450 (751)
Q Consensus 371 ~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A 450 (751)
|.+.|++++|...|+++...+.. +......++..+........+.+.+..+...+..|+...+..-.............
T Consensus 83 ~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (514)
T 2gw1_A 83 NEGLGKFADAMFDLSVLSLNGDF-NDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSV 161 (514)
T ss_dssp HHHTTCHHHHHHHHHHHHHSSSC-CGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCH
T ss_pred HHHHhhHHHHHHHHHHHHhcCCC-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchh
Confidence 99999999999999999887643 44444555555544444444444443333222222222111111111111112222
Q ss_pred HHHHHHHHhCCC---------CCCHHHHHHHHHHHHh---cCCHHHHHHHHHHHHH-----c--CC------CCCHHHHH
Q 004470 451 FSLHNNMVHMRL---------TPNVVTYTALADGLCK---SGELETANELLHEMCR-----K--GL------QLNIYTYN 505 (751)
Q Consensus 451 ~~~~~~~~~~~~---------~~~~~~~~~li~~~~~---~g~~~~A~~l~~~m~~-----~--g~------~~~~~~~~ 505 (751)
..+...+..... +.+...+..+...+.. .|++++|...++++.+ . .. +.+...+.
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (514)
T 2gw1_A 162 TSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLE 241 (514)
T ss_dssp HHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHH
T ss_pred HHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHH
Confidence 222111111111 1235555555555554 8999999999999988 3 11 22356788
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 004470 506 SIVNGLCKAGNILQAVKLMEDMEVAGFHPDTFTYTTIMDAYCKSGEMVKAHELLRDMLDKGLQPSVVTFNVLMNGFCMSG 585 (751)
Q Consensus 506 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g 585 (751)
.+...+...|++++|...++++.+.. |+...+..+...+...|++++|...++++.+.. +.+..++..+...+...|
T Consensus 242 ~~~~~~~~~~~~~~A~~~~~~~l~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~ 318 (514)
T 2gw1_A 242 HTGIFKFLKNDPLGAHEDIKKAIELF--PRVNSYIYMALIMADRNDSTEYYNYFDKALKLD-SNNSSVYYHRGQMNFILQ 318 (514)
T ss_dssp HHHHHHHHSSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTC-TTCTHHHHHHHHHHHHTT
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhhC--ccHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcC-cCCHHHHHHHHHHHHHhC
Confidence 88999999999999999999998875 448889999999999999999999999999874 557788999999999999
Q ss_pred ChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 004470 586 MIEDGEKLLKWMLEKGLKPNAATYNPLIKQHCLRNDMRTTAKIYKGMCAQGITPDGNTYNILLQGHCKARNMKEAWFLHK 665 (751)
Q Consensus 586 ~~~~A~~l~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 665 (751)
++++|...++++.+.... +...+..+...+...|++++|.+.++++.+.. +.+...+..++..+.+.|++++|...++
T Consensus 319 ~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~ 396 (514)
T 2gw1_A 319 NYDQAGKDFDKAKELDPE-NIFPYIQLACLAYRENKFDDCETLFSEAKRKF-PEAPEVPNFFAEILTDKNDFDKALKQYD 396 (514)
T ss_dssp CTTHHHHHHHHHHHTCSS-CSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhChh-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc-ccCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 999999999999987433 56788899999999999999999999999853 3367788899999999999999999999
Q ss_pred HHHHCCCCC-C----HHHHHHHHHHHHh---cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 004470 666 EMVQKGFNL-T----TSSYNALIKGFLK---RKKYLEARELFEEMRRGGLVADREIYYFFVDINFEEGNTEITLELCDAA 737 (751)
Q Consensus 666 ~~~~~~~~p-~----~~~~~~l~~~~~~---~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 737 (751)
++.+..+.. + ...+..++..+.. .|++++|...++++++.. +.+...+..++.++.+.|++++|.+.++++
T Consensus 397 ~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 475 (514)
T 2gw1_A 397 LAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLD-PRSEQAKIGLAQMKLQQEDIDEAITLFEES 475 (514)
T ss_dssp HHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 998754331 1 3489999999999 999999999999999864 567888999999999999999999999999
Q ss_pred HHcCCC
Q 004470 738 IECYLV 743 (751)
Q Consensus 738 ~~~~~~ 743 (751)
++....
T Consensus 476 ~~~~~~ 481 (514)
T 2gw1_A 476 ADLART 481 (514)
T ss_dssp HHHCSS
T ss_pred HHhccc
Confidence 987653
No 9
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.92 E-value=1.7e-22 Score=224.51 Aligned_cols=432 Identities=13% Similarity=0.007 Sum_probs=321.9
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHH
Q 004470 255 NTASYNIMIHCLCRFGKIKEAHLLLLQMELRGCSPDVVSFSTIINGYCYLGELQRVLKLIEEMQIKGLKPNPYTYNSVVR 334 (751)
Q Consensus 255 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~ 334 (751)
....+..+...+.+.|++++|+..|+++..... .+..+|..+...|.+.|++++|++.++++.+.+ +.+..++..+..
T Consensus 24 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~ 101 (537)
T 3fp2_A 24 YAVQLKNRGNHFFTAKNFNEAIKYYQYAIELDP-NEPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRAS 101 (537)
T ss_dssp HHHHHHHHHHHHHHTTCCC-CHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCC-CCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHHHHH
Confidence 456788889999999999999999999887653 578889999999999999999999999998875 346788889999
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC------CCCCHHHHHHHHHHHHh
Q 004470 335 LLCKTSKVVEAETILREMMNQGIVPDNVIYTTLIDGFCKMGNVAAAYRLFDEMRGLN------IIPDLLTYTAIICGFCL 408 (751)
Q Consensus 335 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~------~~p~~~~~~~li~~~~~ 408 (751)
++...|++++|...|+. ... .|+. ....+..+...+...+|...++++.... ..|+. ..+..+..
T Consensus 102 ~~~~~g~~~~A~~~~~~-~~~--~~~~--~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~----~~~~~~~~ 172 (537)
T 3fp2_A 102 ANESLGNFTDAMFDLSV-LSL--NGDF--DGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSN----TSLASFFG 172 (537)
T ss_dssp HHHHHTCHHHHHHHHHH-HC---------------CHHHHHHHHHHHHHHHHHCC-------CCCCCH----HHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHH-Hhc--CCCC--ChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchH----hHHHHHHH
Confidence 99999999999999963 332 2222 2233556666677788999999886642 22333 33445666
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHHc--------CChhHHHHHHHHHHhCCCCCC-------HHHHHHH
Q 004470 409 TGKMVEAEKLFHEMLGRGLEPDEI-VYTALIDGYCKA--------GGMKKAFSLHNNMVHMRLTPN-------VVTYTAL 472 (751)
Q Consensus 409 ~g~~~~A~~~~~~m~~~~~~p~~~-~~~~li~~~~~~--------g~~~~A~~~~~~~~~~~~~~~-------~~~~~~l 472 (751)
..+.+.+...+...... .+... ....+...+... |++++|..+++++.+..+. + ..++..+
T Consensus 173 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~-~~~~~~~~~~~~~~~ 249 (537)
T 3fp2_A 173 IFDSHLEVSSVNTSSNY--DTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTV-DDPLRENAALALCYT 249 (537)
T ss_dssp TSCHHHHHHTSCCCCSS--CSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CC-CHHHHHHHHHHHHHH
T ss_pred hcChHHHHHHHhhcccc--ccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCC-cchhhHHHHHHHHHH
Confidence 77777766555443322 22322 333333333222 4788899999988876533 3 2356677
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCH
Q 004470 473 ADGLCKSGELETANELLHEMCRKGLQLNIYTYNSIVNGLCKAGNILQAVKLMEDMEVAGFHPDTFTYTTIMDAYCKSGEM 552 (751)
Q Consensus 473 i~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 552 (751)
...+...|++++|.+.++++.+.. |+...+..+...+...|++++|...++++.+.. +.+..++..+...+...|++
T Consensus 250 g~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~ 326 (537)
T 3fp2_A 250 GIFHFLKNNLLDAQVLLQESINLH--PTPNSYIFLALTLADKENSQEFFKFFQKAVDLN-PEYPPTYYHRGQMYFILQDY 326 (537)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHhcccHHHHHHHHHHHHhcC--CCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC-CCCHHHHHHHHHHHHhcCCH
Confidence 778888899999999999998874 457788888888889999999999999988765 56788888899999999999
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHH
Q 004470 553 VKAHELLRDMLDKGLQPSVVTFNVLMNGFCMSGMIEDGEKLLKWMLEKGLKPNAATYNPLIKQHCLRNDMRTTAKIYKGM 632 (751)
Q Consensus 553 ~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m 632 (751)
++|...++++.+.. +.+...+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|.+.++++
T Consensus 327 ~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 404 (537)
T 3fp2_A 327 KNAKEDFQKAQSLN-PENVYPYIQLACLLYKQGKFTESEAFFNETKLKF-PTLPEVPTFFAEILTDRGDFDTAIKQYDIA 404 (537)
T ss_dssp HHHHHHHHHHHHHC-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 99999999988764 4466788888899999999999999999988863 335667888888899999999999999988
Q ss_pred HHCCC-----CCCHHHHHHHHHHHHhc----------CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 004470 633 CAQGI-----TPDGNTYNILLQGHCKA----------RNMKEAWFLHKEMVQKGFNLTTSSYNALIKGFLKRKKYLEARE 697 (751)
Q Consensus 633 ~~~g~-----~p~~~~~~~li~~~~~~----------g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~ 697 (751)
.+... ......+..+...+... |++++|+..++++++..+. +...+..++.+|.+.|++++|.+
T Consensus 405 ~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~-~~~~~~~l~~~~~~~g~~~~A~~ 483 (537)
T 3fp2_A 405 KRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPR-SEQAKIGLAQLKLQMEKIDEAIE 483 (537)
T ss_dssp HHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhccHHHHHH
Confidence 76321 11223344556777777 9999999999999887554 77888899999999999999999
Q ss_pred HHHHHHHCC
Q 004470 698 LFEEMRRGG 706 (751)
Q Consensus 698 ~~~~~~~~~ 706 (751)
.|+++++..
T Consensus 484 ~~~~al~~~ 492 (537)
T 3fp2_A 484 LFEDSAILA 492 (537)
T ss_dssp HHHHHHHHC
T ss_pred HHHHHHHhC
Confidence 999998854
No 10
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.92 E-value=7.6e-22 Score=214.05 Aligned_cols=343 Identities=13% Similarity=0.088 Sum_probs=207.8
Q ss_pred CcccHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 004470 325 NPYTYNSVVRLLCKTSKVVEAETILREMMNQGIVPDNVIYTTLIDGFCKMGNVAAAYRLFDEMRGLNIIPDLLTYTAIIC 404 (751)
Q Consensus 325 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~ 404 (751)
+...+..++..+.+.|++++|..+|+++.+.. +.+..++..+...|.+.|++++|...|+++.+.++. +...+..+..
T Consensus 25 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~ 102 (450)
T 2y4t_A 25 DVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMD-FTAARLQRGH 102 (450)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-cHHHHHHHHH
Confidence 44555666666666666666666666665542 334555666666666666666666666666554432 4555566666
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCC-H---HHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 004470 405 GFCLTGKMVEAEKLFHEMLGRGLEPD-E---IVYTALIDGYCKAGGMKKAFSLHNNMVHMRLTPNVVTYTALADGLCKSG 480 (751)
Q Consensus 405 ~~~~~g~~~~A~~~~~~m~~~~~~p~-~---~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 480 (751)
.+...|++++|.+.|+++... .|+ . ..+..++..+.. ..+..+...+.+.|
T Consensus 103 ~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~-----------------------~~~~~~a~~~~~~~ 157 (450)
T 2y4t_A 103 LLLKQGKLDEAEDDFKKVLKS--NPSENEEKEAQSQLIKSDEM-----------------------QRLRSQALNAFGSG 157 (450)
T ss_dssp HHHHTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHT
T ss_pred HHHHcCCHHHHHHHHHHHHhc--CCCChhhHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHcC
Confidence 666666666666666666554 222 2 334333332100 01122233456666
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 004470 481 ELETANELLHEMCRKGLQLNIYTYNSIVNGLCKAGNILQAVKLMEDMEVAGFHPDTFTYTTIMDAYCKSGEMVKAHELLR 560 (751)
Q Consensus 481 ~~~~A~~l~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 560 (751)
++++|...++++.+... .+...+..+..++.+.|++++|...++++.+.. +.+..++..++..|...|++++|...|+
T Consensus 158 ~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 235 (450)
T 2y4t_A 158 DYTAAIAFLDKILEVCV-WDAELRELRAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQLGDHELSLSEVR 235 (450)
T ss_dssp CHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 66666666666665532 255666666666666666666666666665543 4556666666666666777777777766
Q ss_pred HHHhCCCCCCHHHHHHH------------HHHHHhcCChhHHHHHHHHHHHcCCCCC-----HhhHHHHHHHHHHcCCHH
Q 004470 561 DMLDKGLQPSVVTFNVL------------MNGFCMSGMIEDGEKLLKWMLEKGLKPN-----AATYNPLIKQHCLRNDMR 623 (751)
Q Consensus 561 ~~~~~~~~p~~~~~~~l------------i~~~~~~g~~~~A~~l~~~~~~~g~~p~-----~~~~~~l~~~~~~~g~~~ 623 (751)
++.+.. +.+...+..+ +..+...|++++|...++++.+. .|+ ...+..+...+.+.|+++
T Consensus 236 ~~~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~~~~~~l~~~~~~~g~~~ 312 (450)
T 2y4t_A 236 ECLKLD-QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT--EPSIAEYTVRSKERICHCFSKDEKPV 312 (450)
T ss_dssp HHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CCSSHHHHHHHHHHHHHHHHTTTCHH
T ss_pred HHHHhC-CChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHHHHCCCHH
Confidence 666542 2234444333 66777778888888888777764 333 335667777777888888
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH------------HHhcC-
Q 004470 624 TTAKIYKGMCAQGITPDGNTYNILLQGHCKARNMKEAWFLHKEMVQKGFNLTTSSYNALIKG------------FLKRK- 690 (751)
Q Consensus 624 ~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~------------~~~~g- 690 (751)
+|.+.++++.+.. +.+...|..++.+|...|++++|...++++++..+. +...+..+..+ |...|
T Consensus 313 ~A~~~~~~a~~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~~~~~~~y~~lg~ 390 (450)
T 2y4t_A 313 EAIRVCSEVLQME-PDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNEN-DQQIREGLEKAQRLLKQSQKRDYYKILGV 390 (450)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSS-CHHHHHHHHHHHHHHHHHHSCCSGGGSCS
T ss_pred HHHHHHHHHHHhC-cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcc-hHHHHHHHHHHHHHhhcccchhHHHHhCC
Confidence 8888888777642 235677777888888888888888888888776444 55666666533 22233
Q ss_pred ----CHHHHHHHHHH
Q 004470 691 ----KYLEARELFEE 701 (751)
Q Consensus 691 ----~~~~A~~~~~~ 701 (751)
+.+++.+.+++
T Consensus 391 ~~~~~~~~~~~~y~~ 405 (450)
T 2y4t_A 391 KRNAKKQEIIKAYRK 405 (450)
T ss_dssp STTCCTTHHHHHHHH
T ss_pred CccCCHHHHHHHHHH
Confidence 55666777776
No 11
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.92 E-value=5.3e-22 Score=215.30 Aligned_cols=362 Identities=13% Similarity=0.051 Sum_probs=260.9
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004470 345 AETILREMMNQGIVPDNVIYTTLIDGFCKMGNVAAAYRLFDEMRGLNIIPDLLTYTAIICGFCLTGKMVEAEKLFHEMLG 424 (751)
Q Consensus 345 A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 424 (751)
+...+.++.... +.+...+..++..|.+.|++++|..+|+++.+..+. +..+|..+..++...|++++|+..|+++++
T Consensus 11 ~~~~~~~~~~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 88 (450)
T 2y4t_A 11 VDLGTENLYFQS-MADVEKHLELGKKLLAAGQLADALSQFHAAVDGDPD-NYIAYYRRATVFLAMGKSKAALPDLTKVIQ 88 (450)
T ss_dssp -------------CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cccccccccccc-HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 333444444332 344556666667777777777777777766654322 566666666667777777777777776666
Q ss_pred CCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH
Q 004470 425 RGLEPDEIVYTALIDGYCKAGGMKKAFSLHNNMVHMRLTPNV---VTYTALADGLCKSGELETANELLHEMCRKGLQLNI 501 (751)
Q Consensus 425 ~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~---~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~ 501 (751)
.+ +.+...+..++..|.+.|++++|...|+++.+..+. +. ..+..++..+..
T Consensus 89 ~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~----------------------- 143 (450)
T 2y4t_A 89 LK-MDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPS-ENEEKEAQSQLIKSDEM----------------------- 143 (450)
T ss_dssp HC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCCC-HHHHHHHHHHHHHHHHH-----------------------
T ss_pred cC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-ChhhHHHHHHHHHHHHH-----------------------
Confidence 53 234556666666666666666666666666654321 22 334433333211
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 004470 502 YTYNSIVNGLCKAGNILQAVKLMEDMEVAGFHPDTFTYTTIMDAYCKSGEMVKAHELLRDMLDKGLQPSVVTFNVLMNGF 581 (751)
Q Consensus 502 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~ 581 (751)
..+..+...+...|++++|+..++++.+.. +.+...+..++..|.+.|++++|.+.|+++.+.. +.+..++..++..|
T Consensus 144 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~ 221 (450)
T 2y4t_A 144 QRLRSQALNAFGSGDYTAAIAFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTLY 221 (450)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 112334556888999999999999998875 6788999999999999999999999999998764 56789999999999
Q ss_pred HhcCChhHHHHHHHHHHHcCCCCCHhhHHHH------------HHHHHHcCCHHHHHHHHHHHHHCCCCCC-----HHHH
Q 004470 582 CMSGMIEDGEKLLKWMLEKGLKPNAATYNPL------------IKQHCLRNDMRTTAKIYKGMCAQGITPD-----GNTY 644 (751)
Q Consensus 582 ~~~g~~~~A~~l~~~~~~~g~~p~~~~~~~l------------~~~~~~~g~~~~A~~~~~~m~~~g~~p~-----~~~~ 644 (751)
...|++++|...++++.+... .+...+..+ ...+...|++++|.+.|+++++. .|+ ...+
T Consensus 222 ~~~g~~~~A~~~~~~~~~~~p-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~~~~ 298 (450)
T 2y4t_A 222 YQLGDHELSLSEVRECLKLDQ-DHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT--EPSIAEYTVRSK 298 (450)
T ss_dssp HHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CCSSHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhCC-ChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCcchHHHHHHH
Confidence 999999999999999997632 234444444 78899999999999999999984 454 4578
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH----
Q 004470 645 NILLQGHCKARNMKEAWFLHKEMVQKGFNLTTSSYNALIKGFLKRKKYLEARELFEEMRRGGLVADREIYYFFVDI---- 720 (751)
Q Consensus 645 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~---- 720 (751)
..++..+.+.|++++|+..++++++..+. +..+|..++.+|...|++++|...++++++.. +.+...+..+..+
T Consensus 299 ~~l~~~~~~~g~~~~A~~~~~~a~~~~p~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~ 376 (450)
T 2y4t_A 299 ERICHCFSKDEKPVEAIRVCSEVLQMEPD-NVNALKDRAEAYLIEEMYDEAIQDYETAQEHN-ENDQQIREGLEKAQRLL 376 (450)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-cchHHHHHHHHHHHHHh
Confidence 88999999999999999999999987543 78999999999999999999999999999854 4567777777633
Q ss_pred --------HHhcC-----ChhHHHHHHHH-HHHc
Q 004470 721 --------NFEEG-----NTEITLELCDA-AIEC 740 (751)
Q Consensus 721 --------~~~~g-----~~~~A~~~~~~-~~~~ 740 (751)
|...| +.+++.+.+++ +++.
T Consensus 377 ~~~~~~~~y~~lg~~~~~~~~~~~~~y~~~~l~~ 410 (450)
T 2y4t_A 377 KQSQKRDYYKILGVKRNAKKQEIIKAYRKLALQW 410 (450)
T ss_dssp HHHHSCCSGGGSCSSTTCCTTHHHHHHHHHHHHS
T ss_pred hcccchhHHHHhCCCccCCHHHHHHHHHHHHHHh
Confidence 33344 66778888887 4444
No 12
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.92 E-value=6.3e-22 Score=219.96 Aligned_cols=444 Identities=11% Similarity=0.010 Sum_probs=260.1
Q ss_pred hhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCccCHHhHHHHHHHHHhCCCCHHHHHHHHHhchhcCCCcCHHHHHHHHH
Q 004470 185 PHVFDIFFQVLVEARKLNEARKLFEKLLNYGLVISVDSCNLFLSRLSNTCDGLRMVVKSFTEFPELGICWNTASYNIMIH 264 (751)
Q Consensus 185 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 264 (751)
+..+..++..+.+.|++++|+..|+++++. .|+.......++.++...|++++|++.|+++.+.++. +..++..+..
T Consensus 25 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~ 101 (537)
T 3fp2_A 25 AVQLKNRGNHFFTAKNFNEAIKYYQYAIEL--DPNEPVFYSNISACYISTGDLEKVIEFTTKALEIKPD-HSKALLRRAS 101 (537)
T ss_dssp HHHHHHHHHHHHHTTCCC-CHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhh--CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-hHHHHHHHHH
Confidence 456788999999999999999999999887 4655555555555555678888888888888877654 6777888888
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC--CCCCcccHHHHHHHHHhcCCH
Q 004470 265 CLCRFGKIKEAHLLLLQMELRGCSPDVVSFSTIINGYCYLGELQRVLKLIEEMQIKG--LKPNPYTYNSVVRLLCKTSKV 342 (751)
Q Consensus 265 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g--~~p~~~~~~~li~~~~~~g~~ 342 (751)
.+.+.|++++|+..|+.+... |+ .....+..+...+..++|.+.++++.... ..+........+..+....+.
T Consensus 102 ~~~~~g~~~~A~~~~~~~~~~---~~--~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (537)
T 3fp2_A 102 ANESLGNFTDAMFDLSVLSLN---GD--FDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDS 176 (537)
T ss_dssp HHHHHTCHHHHHHHHHHHC----------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCH
T ss_pred HHHHcCCHHHHHHHHHHHhcC---CC--CChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcCh
Confidence 888888888888888533221 22 12223445555566677777777775431 111222223344445555555
Q ss_pred HHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHH--------cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHH
Q 004470 343 VEAETILREMMNQGIVPDNV-IYTTLIDGFCK--------MGNVAAAYRLFDEMRGLNIIPDLLTYTAIICGFCLTGKMV 413 (751)
Q Consensus 343 ~~A~~~~~~m~~~g~~p~~~-~~~~li~~~~~--------~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~ 413 (751)
+.+...+...... .+... ....+...+.. .|++++|..+++++.+..+. +...+..+
T Consensus 177 ~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~-~~~~~~~~----------- 242 (537)
T 3fp2_A 177 HLEVSSVNTSSNY--DTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTV-DDPLRENA----------- 242 (537)
T ss_dssp HHHHHTSCCCCSS--CSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CC-CHHHHHHH-----------
T ss_pred HHHHHHHhhcccc--ccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCC-cchhhHHH-----------
Confidence 5544433332221 11111 11222211111 12444444444444443221 11110000
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 004470 414 EAEKLFHEMLGRGLEPDEIVYTALIDGYCKAGGMKKAFSLHNNMVHMRLTPNVVTYTALADGLCKSGELETANELLHEMC 493 (751)
Q Consensus 414 ~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 493 (751)
..++..+...+...|++++|...++++.+.. |+..++..+...+...|++++|.+.++++.
T Consensus 243 -----------------~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 303 (537)
T 3fp2_A 243 -----------------ALALCYTGIFHFLKNNLLDAQVLLQESINLH--PTPNSYIFLALTLADKENSQEFFKFFQKAV 303 (537)
T ss_dssp -----------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHTCCSSCCHHHHHHHHHHH
T ss_pred -----------------HHHHHHHHHHHHhcccHHHHHHHHHHHHhcC--CCchHHHHHHHHHHHhcCHHHHHHHHHHHh
Confidence 1123444455555666666666666665543 335555566666666666666666666666
Q ss_pred HcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHH
Q 004470 494 RKGLQLNIYTYNSIVNGLCKAGNILQAVKLMEDMEVAGFHPDTFTYTTIMDAYCKSGEMVKAHELLRDMLDKGLQPSVVT 573 (751)
Q Consensus 494 ~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~ 573 (751)
+.... +..++..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|...++++.+.. +.+...
T Consensus 304 ~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~ 380 (537)
T 3fp2_A 304 DLNPE-YPPTYYHRGQMYFILQDYKNAKEDFQKAQSLN-PENVYPYIQLACLLYKQGKFTESEAFFNETKLKF-PTLPEV 380 (537)
T ss_dssp HHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHH
T ss_pred ccCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHH
Confidence 55322 55566666666666677777777766666554 3445666667777777777777777777776653 445566
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHcCCC-----CCHhhHHHHHHHHHHc----------CCHHHHHHHHHHHHHCCCC
Q 004470 574 FNVLMNGFCMSGMIEDGEKLLKWMLEKGLK-----PNAATYNPLIKQHCLR----------NDMRTTAKIYKGMCAQGIT 638 (751)
Q Consensus 574 ~~~li~~~~~~g~~~~A~~l~~~~~~~g~~-----p~~~~~~~l~~~~~~~----------g~~~~A~~~~~~m~~~g~~ 638 (751)
+..+...+...|++++|...++++.+.... .....+..+...+... |++++|...++++.+.. +
T Consensus 381 ~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p 459 (537)
T 3fp2_A 381 PTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELD-P 459 (537)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHC-T
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhC-C
Confidence 777777777777777777777776654211 1112233444556666 88888888888887753 3
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 004470 639 PDGNTYNILLQGHCKARNMKEAWFLHKEMVQKGFN 673 (751)
Q Consensus 639 p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~ 673 (751)
.+...+..+...|.+.|++++|.+.|+++.+..+.
T Consensus 460 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~ 494 (537)
T 3fp2_A 460 RSEQAKIGLAQLKLQMEKIDEAIELFEDSAILART 494 (537)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--
T ss_pred CCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC
Confidence 35677888888888888888888888888876543
No 13
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.88 E-value=8.8e-17 Score=183.34 Aligned_cols=430 Identities=13% Similarity=0.097 Sum_probs=301.7
Q ss_pred CchhHHHHHHHhhcCChHHHHHHHHhhhhC---CCCChhHHHHHHHHHHhcCChHHHHHHHHHHHcCCCCCchhhhHHHH
Q 004470 95 FRSDHLIWVLMDIRSDYRLVLDFFDWACLR---REPILEARCIVVQISVAAKDLKTAHGLIHDFWAKPNLDASIAFTHFV 171 (751)
Q Consensus 95 ~~~~~~~~~l~~~~~~~~~al~~f~~~~~~---~~~~~~~~~~~~~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~ 171 (751)
-+++.-..||. .+.+-=....+|+... ...+.+--...+..+...|.+.+|..++++++..+.. -..+...-
T Consensus 951 ~d~~lW~~vl~---~~n~~RR~Lidqv~a~aL~e~~~PeeVs~~vKaf~~aglp~EaieLLEKivl~~s~--fs~n~~Lq 1025 (1630)
T 1xi4_A 951 KDPELWGSVLL---ESNPYRRPLIDQVVQTALSETQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSV--FSEHRNLQ 1025 (1630)
T ss_pred cCHHHHHHHhc---CCcHHHHHHHHHHHHhhcccccCHHHhHHHHHHHHhCCCHHHHHHHHHHHHcCCCc--ccccHHHH
Confidence 34555555552 2223334556665432 1122333345566666788888888888888744320 00111111
Q ss_pred HHHHH-hhhcCCCC---------hhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCccCHHhHHHHHHHHHhCCCCHHHHH
Q 004470 172 ERLIY-TYKDWGSD---------PHVFDIFFQVLVEARKLNEARKLFEKLLNYGLVISVDSCNLFLSRLSNTCDGLRMVV 241 (751)
Q Consensus 172 ~~l~~-~~~~~~~~---------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~l~~~~~~~~~a~ 241 (751)
..++. +.+.-+.. ......++..+...|++++|..+|++... . ...+..+....+++++|.
T Consensus 1026 nlLi~tAIkaD~~Rv~eyI~kLd~~d~~eIA~Iai~lglyEEAf~IYkKa~~-----~----~~A~~VLie~i~nldrAi 1096 (1630)
T 1xi4_A 1026 NLLILTAIKADRTRVMEYINRLDNYDAPDIANIAISNELFEEAFAIFRKFDV-----N----TSAVQVLIEHIGNLDRAY 1096 (1630)
T ss_pred HHHHHHHHHhChhhHHHHHHHhhhccHHHHHHHHHhCCCHHHHHHHHHHcCC-----H----HHHHHHHHHHHhhHHHHH
Confidence 11111 11111111 11234478999999999999999998621 1 112333444568899999
Q ss_pred HHHHhchhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 004470 242 KSFTEFPELGICWNTASYNIMIHCLCRFGKIKEAHLLLLQMELRGCSPDVVSFSTIINGYCYLGELQRVLKLIEEMQIKG 321 (751)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 321 (751)
++.++.. +..+|..+..++.+.|++++|++.|.+. -|...|..++..+.+.|++++|++.+....+..
T Consensus 1097 E~Aervn------~p~vWsqLAKAql~~G~~kEAIdsYiKA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~ 1164 (1630)
T 1xi4_A 1097 EFAERCN------EPAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA 1164 (1630)
T ss_pred HHHHhcC------CHHHHHHHHHHHHhCCCHHHHHHHHHhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc
Confidence 9998662 5788999999999999999999999664 467788899999999999999999999888764
Q ss_pred CCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHH
Q 004470 322 LKPNPYTYNSVVRLLCKTSKVVEAETILREMMNQGIVPDNVIYTTLIDGFCKMGNVAAAYRLFDEMRGLNIIPDLLTYTA 401 (751)
Q Consensus 322 ~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ 401 (751)
+++...+.++.+|++.+++++.... ++ .++...|..+.+.|...|++++|..+|... ..|..
T Consensus 1165 --~e~~Idt~LafaYAKl~rleele~f----I~---~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~r 1226 (1630)
T 1xi4_A 1165 --RESYVETELIFALAKTNRLAELEEF----IN---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGR 1226 (1630)
T ss_pred --ccccccHHHHHHHHhhcCHHHHHHH----Hh---CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHH
Confidence 4444455699999999998864443 22 356677888999999999999999999885 37999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 004470 402 IICGFCLTGKMVEAEKLFHEMLGRGLEPDEIVYTALIDGYCKAGGMKKAFSLHNNMVHMRLTPNVVTYTALADGLCKSGE 481 (751)
Q Consensus 402 li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 481 (751)
+...+++.|++++|.+.+++. .+..+|..+..+|...|++..|......+. .++..+..++..|.+.|.
T Consensus 1227 LA~tLvkLge~q~AIEaarKA------~n~~aWkev~~acve~~Ef~LA~~cgl~Ii-----v~~deLeeli~yYe~~G~ 1295 (1630)
T 1xi4_A 1227 LASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHIV-----VHADELEELINYYQDRGY 1295 (1630)
T ss_pred HHHHHHHhCCHHHHHHHHHHh------CCHHHHHHHHHHHhhhhHHHHHHHHHHhhh-----cCHHHHHHHHHHHHHcCC
Confidence 999999999999999999887 366889999999999999999988765432 467778899999999999
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHCCCCC------CHHHHHHHHHHHHHcCCHH
Q 004470 482 LETANELLHEMCRKGLQLNIYTYNSIVNGLCKA--GNILQAVKLMEDMEVAGFHP------DTFTYTTIMDAYCKSGEMV 553 (751)
Q Consensus 482 ~~~A~~l~~~m~~~g~~~~~~~~~~li~~~~~~--g~~~~A~~~~~~~~~~~~~~------~~~~~~~li~~~~~~g~~~ 553 (751)
+++|+.+++...... +-....|.-+...+++. ++..++.+.|..-. ++++ +...|..+.-.|.+.|+++
T Consensus 1296 feEAI~LlE~aL~Le-raH~gmftELaiLyaKy~peklmEhlk~f~~ri--ni~k~~r~~e~~~lW~elv~LY~~~~e~d 1372 (1630)
T 1xi4_A 1296 FEELITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMREHLELFWSRV--NIPKVLRAAEQAHLWAELVFLYDKYEEYD 1372 (1630)
T ss_pred HHHHHHHHHHHhccC-hhHhHHHHHHHHHHHhCCHHHHHHHHHHHHHhc--ccchHhHHHHHHHHHHHHHHHHHhcccHH
Confidence 999999998887654 33445666666666654 35555666555332 2222 4677889999999999999
Q ss_pred HHHHHH-------------HHHHhCCCCCCHHHHHHHHHHHHhc
Q 004470 554 KAHELL-------------RDMLDKGLQPSVVTFNVLMNGFCMS 584 (751)
Q Consensus 554 ~A~~~~-------------~~~~~~~~~p~~~~~~~li~~~~~~ 584 (751)
.|...+ .+.+.. ..+...|...+..|...
T Consensus 1373 nA~~tm~~h~~~a~~~~~Fk~~i~k--v~n~elyykai~Fyl~~ 1414 (1630)
T 1xi4_A 1373 NAIITMMNHPTDAWKEGQFKDIITK--VANVELYYRAIQFYLEF 1414 (1630)
T ss_pred HHHHHHHhccHhhhhhHHHHHHhcc--cccHHHHHHHHHHHHhh
Confidence 998432 222222 44777777777777743
No 14
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.87 E-value=7.3e-19 Score=183.88 Aligned_cols=331 Identities=13% Similarity=0.053 Sum_probs=215.2
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 004470 360 DNVIYTTLIDGFCKMGNVAAAYRLFDEMRGLNIIPDLLTYTAIICGFCLTGKMVEAEKLFHEMLGRGLEPDEIVYTALID 439 (751)
Q Consensus 360 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~ 439 (751)
|+..+..+...+.+.|++++|...|+++.+..+. +...+..+...+...|++++|+..++++++.. +.+...+..+..
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~ 79 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGDPD-NYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQRGH 79 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcc-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHHHH
Confidence 3455666777777777777777777777665433 56667777777777777777777777776652 235566677777
Q ss_pred HHHHcCChhHHHHHHHHHHhCCCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCH
Q 004470 440 GYCKAGGMKKAFSLHNNMVHMRLT--PNVVTYTALADGLCKSGELETANELLHEMCRKGLQLNIYTYNSIVNGLCKAGNI 517 (751)
Q Consensus 440 ~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~~~~li~~~~~~g~~ 517 (751)
.+...|++++|...++++.+..+. .+...+..+...+. ...+..+...+...|++
T Consensus 80 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-----------------------~~~~~~~a~~~~~~~~~ 136 (359)
T 3ieg_A 80 LLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADE-----------------------MQRLRSQALDAFDGADY 136 (359)
T ss_dssp HHHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHTTCH
T ss_pred HHHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHccCH
Confidence 777777777777777777665320 12333333311100 01122234556666777
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 004470 518 LQAVKLMEDMEVAGFHPDTFTYTTIMDAYCKSGEMVKAHELLRDMLDKGLQPSVVTFNVLMNGFCMSGMIEDGEKLLKWM 597 (751)
Q Consensus 518 ~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~~ 597 (751)
++|...++++.+.. +.+...+..+...+...|++++|...++++.+.. +.+..++..+...+...|++++|...+++.
T Consensus 137 ~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a 214 (359)
T 3ieg_A 137 TAAITFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVREC 214 (359)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 77777777766654 4556666667777777777777777777776653 446666777777777777777777777776
Q ss_pred HHcCCCCCHhhHH------------HHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-H----HHHHHHHHHHHhcCCHHHH
Q 004470 598 LEKGLKPNAATYN------------PLIKQHCLRNDMRTTAKIYKGMCAQGITPD-G----NTYNILLQGHCKARNMKEA 660 (751)
Q Consensus 598 ~~~g~~p~~~~~~------------~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~-~----~~~~~li~~~~~~g~~~~A 660 (751)
.+.... +...+. .+...+...|++++|.+.++++.+.. |+ . ..+..+...+.+.|++++|
T Consensus 215 ~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~la~~~~~~~~~~~A 291 (359)
T 3ieg_A 215 LKLDQD-HKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTE--PSVAEYTVRSKERICHCFSKDEKPVEA 291 (359)
T ss_dssp HHHCTT-CHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CSSHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HhhCcc-chHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCchHHHHHHHHHHHHHHHHccCHHHH
Confidence 664221 222222 23556778888888888888888743 33 2 2345567788888888888
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 004470 661 WFLHKEMVQKGFNLTTSSYNALIKGFLKRKKYLEARELFEEMRRGGLVADREIYYFFVDINF 722 (751)
Q Consensus 661 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 722 (751)
+..++++++..+. +..++..++..+...|++++|...|+++++.. +.+...+..+..+..
T Consensus 292 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~ 351 (359)
T 3ieg_A 292 IRICSEVLQMEPD-NVNALKDRAEAYLIEEMYDEAIQDYEAAQEHN-ENDQQIREGLEKAQR 351 (359)
T ss_dssp HHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCcc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCChHHHHHHHHHHH
Confidence 8888888886543 67788888888888888888888888888754 445566655555443
No 15
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.87 E-value=2.4e-17 Score=180.57 Aligned_cols=366 Identities=12% Similarity=0.072 Sum_probs=292.4
Q ss_pred HHHHHHHHHHHHCCCCCCcccHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH----cCCHHH
Q 004470 308 QRVLKLIEEMQIKGLKPNPYTYNSVVRLLCK----TSKVVEAETILREMMNQGIVPDNVIYTTLIDGFCK----MGNVAA 379 (751)
Q Consensus 308 ~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~----~g~~~~ 379 (751)
..+++.+.+..+.| +...+..+...|.. .+++++|...|++..+.| +...+..|...|.. .++.++
T Consensus 24 ~~~~~~~~~~a~~g---~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~ 97 (490)
T 2xm6_A 24 NVNLEQLKQKAESG---EAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQ 97 (490)
T ss_dssp -CCHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHH
T ss_pred hHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHH
Confidence 33456666665554 67778888888887 889999999999888864 66788888888888 889999
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH----cCChhHHH
Q 004470 380 AYRLFDEMRGLNIIPDLLTYTAIICGFCL----TGKMVEAEKLFHEMLGRGLEPDEIVYTALIDGYCK----AGGMKKAF 451 (751)
Q Consensus 380 A~~~~~~m~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~----~g~~~~A~ 451 (751)
|.+.|++..+.| +...+..+...|.. .+++++|+..|++..+.| +...+..|...|.. .++.++|.
T Consensus 98 A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~ 171 (490)
T 2xm6_A 98 AVIWYKKAALKG---LPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAR 171 (490)
T ss_dssp HHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHH
T ss_pred HHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHH
Confidence 999999888765 66777778888877 788999999999888765 56777778888877 77889999
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH----cCCHHHHHHH
Q 004470 452 SLHNNMVHMRLTPNVVTYTALADGLCK----SGELETANELLHEMCRKGLQLNIYTYNSIVNGLCK----AGNILQAVKL 523 (751)
Q Consensus 452 ~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~l~~~m~~~g~~~~~~~~~~li~~~~~----~g~~~~A~~~ 523 (751)
..|++..+.| +...+..+...|.. .++.++|.+.|++..+.| +...+..+...|.. .++.++|...
T Consensus 172 ~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~ 245 (490)
T 2xm6_A 172 EWYSKAAEQG---NVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVL 245 (490)
T ss_dssp HHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHH
T ss_pred HHHHHHHHCC---CHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHH
Confidence 9999888864 67788888888887 788999999999888765 56677777777776 7889999999
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc-----CChhHHHHHH
Q 004470 524 MEDMEVAGFHPDTFTYTTIMDAYCK----SGEMVKAHELLRDMLDKGLQPSVVTFNVLMNGFCMS-----GMIEDGEKLL 594 (751)
Q Consensus 524 ~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~-----g~~~~A~~l~ 594 (751)
+++..+.| +...+..+...|.. .+++++|.+.|++..+.| +...+..+...|... ++.++|...+
T Consensus 246 ~~~a~~~~---~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~ 319 (490)
T 2xm6_A 246 FSQSAEQG---NSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWY 319 (490)
T ss_dssp HHHHHTTT---CHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHH
T ss_pred HHHHHHCC---CHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHH
Confidence 98888754 45667777777777 788999999998888765 566777788888776 8889999999
Q ss_pred HHHHHcCCCCCHhhHHHHHHHHHHcC---CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHH
Q 004470 595 KWMLEKGLKPNAATYNPLIKQHCLRN---DMRTTAKIYKGMCAQGITPDGNTYNILLQGHCK----ARNMKEAWFLHKEM 667 (751)
Q Consensus 595 ~~~~~~g~~p~~~~~~~l~~~~~~~g---~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~~ 667 (751)
++..+.| +...+..+...|...| +.++|.++|++..+.| +...+..|...|.. .+++++|+..|+++
T Consensus 320 ~~a~~~~---~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A 393 (490)
T 2xm6_A 320 TKSAEQG---DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAKG---EKAAQFNLGNALLQGKGVKKDEQQAAIWMRKA 393 (490)
T ss_dssp HHHHHTT---CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHH
T ss_pred HHHHhcC---CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHH
Confidence 8888764 4566777777777656 7888899998888864 67777888888887 78899999999988
Q ss_pred HHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCC
Q 004470 668 VQKGFNLTTSSYNALIKGFLK----RKKYLEARELFEEMRRGG 706 (751)
Q Consensus 668 ~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~ 706 (751)
.+.+ ++..+..|...|.+ .+++++|...|+++.+.+
T Consensus 394 ~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~ 433 (490)
T 2xm6_A 394 AEQG---LSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTND 433 (490)
T ss_dssp HHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHH
T ss_pred HhCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC
Confidence 8875 57788888888887 788999999999988865
No 16
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.87 E-value=9.9e-19 Score=182.84 Aligned_cols=318 Identities=11% Similarity=0.040 Sum_probs=227.0
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 004470 396 LLTYTAIICGFCLTGKMVEAEKLFHEMLGRGLEPDEIVYTALIDGYCKAGGMKKAFSLHNNMVHMRLTPNVVTYTALADG 475 (751)
Q Consensus 396 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~ 475 (751)
...+..+...+...|++++|+..|+++++.. +.+...+..+...+...|++++|...++++.+..+. +...+..+...
T Consensus 3 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~ 80 (359)
T 3ieg_A 3 VEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMD-FTAARLQRGHL 80 (359)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-cchHHHHHHHH
Confidence 3445555556666666666666666655542 224555555555666666666666666655554322 44555555555
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHH
Q 004470 476 LCKSGELETANELLHEMCRKGLQ--LNIYTYNSIVNGLCKAGNILQAVKLMEDMEVAGFHPDTFTYTTIMDAYCKSGEMV 553 (751)
Q Consensus 476 ~~~~g~~~~A~~l~~~m~~~g~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 553 (751)
+...|++++|...++++.+.... .+...+..+..... ...+..+...+...|+++
T Consensus 81 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-----------------------~~~~~~~a~~~~~~~~~~ 137 (359)
T 3ieg_A 81 LLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADE-----------------------MQRLRSQALDAFDGADYT 137 (359)
T ss_dssp HHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHTTCHH
T ss_pred HHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHccCHH
Confidence 55556666665555555544210 01112211111100 111233467889999999
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHH
Q 004470 554 KAHELLRDMLDKGLQPSVVTFNVLMNGFCMSGMIEDGEKLLKWMLEKGLKPNAATYNPLIKQHCLRNDMRTTAKIYKGMC 633 (751)
Q Consensus 554 ~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 633 (751)
+|.+.++++.+.. +.+...+..+...+...|++++|...++++.+.. +.+..++..+...+...|++++|.+.++++.
T Consensus 138 ~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~ 215 (359)
T 3ieg_A 138 AAITFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVRECL 215 (359)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 9999999998864 5688899999999999999999999999999864 3467889999999999999999999999999
Q ss_pred HCCCCCCHHHHH------------HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhcCCHHHHHH
Q 004470 634 AQGITPDGNTYN------------ILLQGHCKARNMKEAWFLHKEMVQKGFNLTT----SSYNALIKGFLKRKKYLEARE 697 (751)
Q Consensus 634 ~~g~~p~~~~~~------------~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~----~~~~~l~~~~~~~g~~~~A~~ 697 (751)
+.. +.+...+. .++..+.+.|++++|...++++.+..+. +. ..+..++..+.+.|++++|+.
T Consensus 216 ~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~la~~~~~~~~~~~A~~ 293 (359)
T 3ieg_A 216 KLD-QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPS-VAEYTVRSKERICHCFSKDEKPVEAIR 293 (359)
T ss_dssp HHC-TTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-SHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred hhC-ccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHHHHHHccCHHHHHH
Confidence 853 22344333 2366789999999999999999987544 44 235568899999999999999
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCC
Q 004470 698 LFEEMRRGGLVADREIYYFFVDINFEEGNTEITLELCDAAIECYLV 743 (751)
Q Consensus 698 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 743 (751)
.++++++.. +.+...+..++.++.+.|++++|.+.++++++....
T Consensus 294 ~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~ 338 (359)
T 3ieg_A 294 ICSEVLQME-PDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNEN 338 (359)
T ss_dssp HHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTT
T ss_pred HHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Confidence 999999864 568899999999999999999999999999987644
No 17
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.87 E-value=2.7e-17 Score=180.07 Aligned_cols=397 Identities=13% Similarity=0.034 Sum_probs=329.8
Q ss_pred HHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHh----cCCHHH
Q 004470 273 KEAHLLLLQMELRGCSPDVVSFSTIINGYCY----LGELQRVLKLIEEMQIKGLKPNPYTYNSVVRLLCK----TSKVVE 344 (751)
Q Consensus 273 ~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~----~g~~~~ 344 (751)
..++..++...+. .+...+..+...|.. .+++++|++.|++..+.| +...+..|...|.. .+++++
T Consensus 24 ~~~~~~~~~~a~~---g~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~ 97 (490)
T 2xm6_A 24 NVNLEQLKQKAES---GEAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQ 97 (490)
T ss_dssp -CCHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHH
T ss_pred hHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHH
Confidence 3446667766665 477888888888888 899999999999998875 67788889999998 999999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHH
Q 004470 345 AETILREMMNQGIVPDNVIYTTLIDGFCK----MGNVAAAYRLFDEMRGLNIIPDLLTYTAIICGFCL----TGKMVEAE 416 (751)
Q Consensus 345 A~~~~~~m~~~g~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~----~g~~~~A~ 416 (751)
|.+.|++..+.| +...+..|...|.. .+++++|.+.|++..+.| +...+..+...|.. .++.++|+
T Consensus 98 A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~ 171 (490)
T 2xm6_A 98 AVIWYKKAALKG---LPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAR 171 (490)
T ss_dssp HHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHH
T ss_pred HHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHH
Confidence 999999999875 67788889999988 889999999999998875 67788888888887 78999999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHH----cCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHH
Q 004470 417 KLFHEMLGRGLEPDEIVYTALIDGYCK----AGGMKKAFSLHNNMVHMRLTPNVVTYTALADGLCK----SGELETANEL 488 (751)
Q Consensus 417 ~~~~~m~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~l 488 (751)
+.|++..+.| +...+..+...|.. .++.++|...|++..+.+ +...+..+...|.. .+++++|.++
T Consensus 172 ~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~ 245 (490)
T 2xm6_A 172 EWYSKAAEQG---NVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVL 245 (490)
T ss_dssp HHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHH
T ss_pred HHHHHHHHCC---CHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHH
Confidence 9999999875 67888889999988 899999999999999875 67788888888886 8899999999
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc-----CCHHHHHHHH
Q 004470 489 LHEMCRKGLQLNIYTYNSIVNGLCK----AGNILQAVKLMEDMEVAGFHPDTFTYTTIMDAYCKS-----GEMVKAHELL 559 (751)
Q Consensus 489 ~~~m~~~g~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~-----g~~~~A~~~~ 559 (751)
+++..+.| +...+..+...+.. .++.++|+..+++..+.| +...+..+...|... +++++|...|
T Consensus 246 ~~~a~~~~---~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~ 319 (490)
T 2xm6_A 246 FSQSAEQG---NSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWY 319 (490)
T ss_dssp HHHHHTTT---CHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHH
T ss_pred HHHHHHCC---CHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHH
Confidence 99998875 56677778888887 899999999999998764 566777888888887 8999999999
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHhcC---ChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHH----cCCHHHHHHHHHHH
Q 004470 560 RDMLDKGLQPSVVTFNVLMNGFCMSG---MIEDGEKLLKWMLEKGLKPNAATYNPLIKQHCL----RNDMRTTAKIYKGM 632 (751)
Q Consensus 560 ~~~~~~~~~p~~~~~~~li~~~~~~g---~~~~A~~l~~~~~~~g~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~m 632 (751)
++..+.| +...+..+...|...| +.++|.+.+++..+.| +...+..+...|.. .++.++|.+.|++.
T Consensus 320 ~~a~~~~---~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A 393 (490)
T 2xm6_A 320 TKSAEQG---DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAKG---EKAAQFNLGNALLQGKGVKKDEQQAAIWMRKA 393 (490)
T ss_dssp HHHHHTT---CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHH
T ss_pred HHHHhcC---CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHH
Confidence 9999875 5678888888888766 8899999999999874 67788889999988 89999999999999
Q ss_pred HHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCC-C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004470 633 CAQGITPDGNTYNILLQGHCK----ARNMKEAWFLHKEMVQKGFN-L-TTSSYNALIKGFLKRKKYLEARELFEEMRR 704 (751)
Q Consensus 633 ~~~g~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~~~~-p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 704 (751)
.+.| +...+..|...|.+ .++.++|...|+++.+.++. | ++.....+...+. .+.+.|.+...++.+
T Consensus 394 ~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~~a~~~l~~~~~--~~~~~a~~~a~~~~~ 466 (490)
T 2xm6_A 394 AEQG---LSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTNDMNLFGTENRNITEKKLTA--KQLQQAELLSQQYIE 466 (490)
T ss_dssp HHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHTTSCH--HHHHHHHHHHHHHHH
T ss_pred HhCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCCCcCCHHHHHHHHhcCH--hHHHHHHHHHHHHHH
Confidence 9865 57788889999988 89999999999999998744 2 3344444444333 234455555555444
No 18
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.87 E-value=6.3e-16 Score=176.41 Aligned_cols=421 Identities=14% Similarity=0.112 Sum_probs=307.4
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHH
Q 004470 255 NTASYNIMIHCLCRFGKIKEAHLLLLQMELRG--CSPDVVSFSTIINGYCYLGELQRVLKLIEEMQIKGLKPNPYTYNSV 332 (751)
Q Consensus 255 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g--~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l 332 (751)
|+.--...+.+|+..|.+.+|++++++....+ +.-+....+.++....+. +..+..+..++.... ....+
T Consensus 984 ~PeeVs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~~-------d~~eI 1055 (1630)
T 1xi4_A 984 DPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDNY-------DAPDI 1055 (1630)
T ss_pred CHHHhHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhhc-------cHHHH
Confidence 34444677888899999999999999987431 113445666677777666 556666666655422 14447
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH
Q 004470 333 VRLLCKTSKVVEAETILREMMNQGIVPDNVIYTTLIDGFCKMGNVAAAYRLFDEMRGLNIIPDLLTYTAIICGFCLTGKM 412 (751)
Q Consensus 333 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~ 412 (751)
...+...|.+++|..+|++.. -.....+.++. ..|++++|.++.++.. +..+|..+..++...|++
T Consensus 1056 A~Iai~lglyEEAf~IYkKa~-----~~~~A~~VLie---~i~nldrAiE~Aervn------~p~vWsqLAKAql~~G~~ 1121 (1630)
T 1xi4_A 1056 ANIAISNELFEEAFAIFRKFD-----VNTSAVQVLIE---HIGNLDRAYEFAERCN------EPAVWSQLAKAQLQKGMV 1121 (1630)
T ss_pred HHHHHhCCCHHHHHHHHHHcC-----CHHHHHHHHHH---HHhhHHHHHHHHHhcC------CHHHHHHHHHHHHhCCCH
Confidence 788888999999999999852 12223344433 7788999999988662 567888999999999999
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 004470 413 VEAEKLFHEMLGRGLEPDEIVYTALIDGYCKAGGMKKAFSLHNNMVHMRLTPNVVTYTALADGLCKSGELETANELLHEM 492 (751)
Q Consensus 413 ~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m 492 (751)
++|++.|.+. .|...|..++..+.+.|++++|.+.+....+.. +++...+.++.+|++.+++++.....
T Consensus 1122 kEAIdsYiKA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI--- 1190 (1630)
T 1xi4_A 1122 KEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFI--- 1190 (1630)
T ss_pred HHHHHHHHhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH---
Confidence 9999998663 377788889999999999999999998887764 33333445888899998888544332
Q ss_pred HHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHH
Q 004470 493 CRKGLQLNIYTYNSIVNGLCKAGNILQAVKLMEDMEVAGFHPDTFTYTTIMDAYCKSGEMVKAHELLRDMLDKGLQPSVV 572 (751)
Q Consensus 493 ~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~ 572 (751)
+ .++...|..+...|...|++++|..+|... ..|..+...|++.|++++|.+.+++.. +..
T Consensus 1191 -~---~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA~------n~~ 1251 (1630)
T 1xi4_A 1191 -N---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKAN------STR 1251 (1630)
T ss_pred -h---CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHhC------CHH
Confidence 2 346667778889999999999999999874 378889999999999999999998762 668
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 004470 573 TFNVLMNGFCMSGMIEDGEKLLKWMLEKGLKPNAATYNPLIKQHCLRNDMRTTAKIYKGMCAQGITPDGNTYNILLQGHC 652 (751)
Q Consensus 573 ~~~~li~~~~~~g~~~~A~~l~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~ 652 (751)
+|..+..+|...|++..|......+ ..+...+..++..|.+.|.+++|+.+++..+... +-....|+-|...|+
T Consensus 1252 aWkev~~acve~~Ef~LA~~cgl~I-----iv~~deLeeli~yYe~~G~feEAI~LlE~aL~Le-raH~gmftELaiLya 1325 (1630)
T 1xi4_A 1252 TWKEVCFACVDGKEFRLAQMCGLHI-----VVHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYS 1325 (1630)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHhh-----hcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC-hhHhHHHHHHHHHHH
Confidence 8888888898999988888866542 3356667788889999999999999998887543 224556666666666
Q ss_pred hc--CCHHHHHHHHHHHHHCCC----CCCHHHHHHHHHHHHhcCCHHHHHHH-------------HHHHHHCCCCCCHHH
Q 004470 653 KA--RNMKEAWFLHKEMVQKGF----NLTTSSYNALIKGFLKRKKYLEAREL-------------FEEMRRGGLVADREI 713 (751)
Q Consensus 653 ~~--g~~~~A~~~~~~~~~~~~----~p~~~~~~~l~~~~~~~g~~~~A~~~-------------~~~~~~~~~~~~~~~ 713 (751)
+. +++.+++++|..-..... --+...|..++..|.+.|+++.|... |...+. -..|++.
T Consensus 1326 Ky~peklmEhlk~f~~rini~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~tm~~h~~~a~~~~~Fk~~i~--kv~n~el 1403 (1630)
T 1xi4_A 1326 KFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIIT--KVANVEL 1403 (1630)
T ss_pred hCCHHHHHHHHHHHHHhcccchHhHHHHHHHHHHHHHHHHHhcccHHHHHHHHHhccHhhhhhHHHHHHhc--ccccHHH
Confidence 53 466777777765443210 01567888999999999999988832 222221 2557888
Q ss_pred HHHHHHHHHhcC---------------ChhHHHHHHH
Q 004470 714 YYFFVDINFEEG---------------NTEITLELCD 735 (751)
Q Consensus 714 ~~~l~~~~~~~g---------------~~~~A~~~~~ 735 (751)
|+..+..|...+ +.+++.+++.
T Consensus 1404 yykai~Fyl~~~P~~lndLl~~l~~rlD~~R~V~l~~ 1440 (1630)
T 1xi4_A 1404 YYRAIQFYLEFKPLLLNDLLMVLSPRLDHTRAVNYFS 1440 (1630)
T ss_pred HHHHHHHHHhhChHHHHHHHHHhhhcCChHHHHHHHH
Confidence 888888887777 6777777665
No 19
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.84 E-value=1.4e-18 Score=179.39 Aligned_cols=293 Identities=10% Similarity=0.000 Sum_probs=210.9
Q ss_pred CCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 004470 429 PDEIVYTALIDGYCKAGGMKKAFSLHNNMVHMRLTPNVVTYTALADGLCKSGELETANELLHEMCRKGLQLNIYTYNSIV 508 (751)
Q Consensus 429 p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~~~~li 508 (751)
.+...+..++..+...|++++|..+++++.+..+. +...+..++..+...|++++|..+++++.+.... +...+..+.
T Consensus 20 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~ 97 (330)
T 3hym_B 20 ENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPF-HASCLPVHIGTLVELNKANELFYLSHKLVDLYPS-NPVSWFAVG 97 (330)
T ss_dssp CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-STHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-ChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcC-CHHHHHHHH
Confidence 34445556666667777777777777777665432 4455566666777777777777777777765432 556677777
Q ss_pred HHHHHcC-CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCh
Q 004470 509 NGLCKAG-NILQAVKLMEDMEVAGFHPDTFTYTTIMDAYCKSGEMVKAHELLRDMLDKGLQPSVVTFNVLMNGFCMSGMI 587 (751)
Q Consensus 509 ~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~ 587 (751)
..+...| ++++|...++++.+.. +.+...+..+...+...|++++|...++++.+.. +.+...+..+...+...|++
T Consensus 98 ~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~ 175 (330)
T 3hym_B 98 CYYLMVGHKNEHARRYLSKATTLE-KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM-KGCHLPMLYIGLEYGLTNNS 175 (330)
T ss_dssp HHHHHSCSCHHHHHHHHHHHHTTC-TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCSHHHHHHHHHHHHTTCH
T ss_pred HHHHHhhhhHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHhhH
Confidence 7777777 7777777777777654 4456677777777777788888888777777653 33455666677777778888
Q ss_pred hHHHHHHHHHHHcCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCC--------CCCCHHHHHHHHHHHHhcCCHHH
Q 004470 588 EDGEKLLKWMLEKGLKPNAATYNPLIKQHCLRNDMRTTAKIYKGMCAQG--------ITPDGNTYNILLQGHCKARNMKE 659 (751)
Q Consensus 588 ~~A~~l~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g--------~~p~~~~~~~li~~~~~~g~~~~ 659 (751)
++|...++++.+.. +.+...+..+...+...|++++|.+.++++.+.. .+.+..++..+...+.+.|++++
T Consensus 176 ~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 254 (330)
T 3hym_B 176 KLAERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAE 254 (330)
T ss_dssp HHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHH
Confidence 88888888777653 2356677777777888888888888888777631 12345678888888999999999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH-HhcCChh
Q 004470 660 AWFLHKEMVQKGFNLTTSSYNALIKGFLKRKKYLEARELFEEMRRGGLVADREIYYFFVDIN-FEEGNTE 728 (751)
Q Consensus 660 A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~g~~~ 728 (751)
|+..++++++..+. +...+..++..+.+.|++++|.+.++++++.. +.+...+..++.++ ...|+.+
T Consensus 255 A~~~~~~a~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~g~~~ 322 (330)
T 3hym_B 255 ALDYHRQALVLIPQ-NASTYSAIGYIHSLMGNFENAVDYFHTALGLR-RDDTFSVTMLGHCIEMYIGDSE 322 (330)
T ss_dssp HHHHHHHHHHHSTT-CSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTC-SCCHHHHHHHHHHHHTTTTC--
T ss_pred HHHHHHHHHhhCcc-chHHHHHHHHHHHHhccHHHHHHHHHHHHccC-CCchHHHHHHHHHHHHHhCchh
Confidence 99999998887554 77888889999999999999999999988754 55777888888877 4556543
No 20
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.84 E-value=7.6e-17 Score=178.41 Aligned_cols=432 Identities=10% Similarity=0.057 Sum_probs=291.5
Q ss_pred HHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 004470 279 LLQMELRGCSPDVVSFSTIINGYCYLGELQRVLKLIEEMQIKGLKPNPYTYNSVVRLLCKTSKVVEAETILREMMNQGIV 358 (751)
Q Consensus 279 ~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 358 (751)
|++..+.. +-+...|..++. +.+.|++++|..+|+++.+. .+.+...|..++..+.+.|++++|..+|++.+.. .
T Consensus 2 le~al~~~-P~~~~~w~~l~~-~~~~~~~~~a~~~~e~al~~-~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~--~ 76 (530)
T 2ooe_A 2 AEKKLEEN-PYDLDAWSILIR-EAQNQPIDKARKTYERLVAQ-FPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMK--V 76 (530)
T ss_dssp HHHHHHHC-TTCHHHHHHHHH-HHHSSCHHHHHHHHHHHHTT-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTT--C
T ss_pred hhhHhhhC-CCCHHHHHHHHH-HHHhCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--C
Confidence 44444433 247778888887 47789999999999998876 3446667888888888899999999999998886 4
Q ss_pred CCHHHHHHHHHHH-HHcCCHHHHHH----HHHHHHh-CCCCC-CHHHHHHHHHHHHh---------cCCHHHHHHHHHHH
Q 004470 359 PDNVIYTTLIDGF-CKMGNVAAAYR----LFDEMRG-LNIIP-DLLTYTAIICGFCL---------TGKMVEAEKLFHEM 422 (751)
Q Consensus 359 p~~~~~~~li~~~-~~~g~~~~A~~----~~~~m~~-~~~~p-~~~~~~~li~~~~~---------~g~~~~A~~~~~~m 422 (751)
|+...|..++... ...|+.++|.+ +|+.... .|..| +...|...+..... .|++++|..+|++.
T Consensus 77 p~~~lw~~~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~a 156 (530)
T 2ooe_A 77 LHIDLWKCYLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRG 156 (530)
T ss_dssp CCHHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHH
Confidence 6777777776533 35677776665 6666543 24333 46677777765544 67888888888888
Q ss_pred HHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH------HcC
Q 004470 423 LGRGLEPDEIVYTALIDGYCKAGGMKKAFSLHNNMVHMRLTPNVVTYTALADGLCKSGELETANELLHEMC------RKG 496 (751)
Q Consensus 423 ~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~------~~g 496 (751)
+..........|..........|. .+...++. .+.++++.|..++.++. +..
T Consensus 157 l~~P~~~~~~~~~~~~~~e~~~~~--------------------~~~~~~l~--~~~~~~~~A~~~~~~~~~~~~~l~~~ 214 (530)
T 2ooe_A 157 CVNPMINIEQLWRDYNKYEEGINI--------------------HLAKKMIE--DRSRDYMNARRVAKEYETVMKGLDRN 214 (530)
T ss_dssp TTSCCTTHHHHHHHHHHHHHHHCH--------------------HHHHHHHH--TTHHHHHHHHHHHHHHHHHHHHCCSS
T ss_pred HhchhhhHHHHHHHHHHHHHhhch--------------------hHHHHHHH--HhhHHHHHHHHHHHHHHHHHHHhccc
Confidence 763111112233222211111110 00111110 12344556665555421 111
Q ss_pred ---CCCC--------HHHHHHHHHHHHHc----CCH----HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH-------cC
Q 004470 497 ---LQLN--------IYTYNSIVNGLCKA----GNI----LQAVKLMEDMEVAGFHPDTFTYTTIMDAYCK-------SG 550 (751)
Q Consensus 497 ---~~~~--------~~~~~~li~~~~~~----g~~----~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~-------~g 550 (751)
++|+ ...|...+...... ++. +++..+|+++.... +.+...|..++..+.+ .|
T Consensus 215 ~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g 293 (530)
T 2ooe_A 215 APSVPPQNTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKG 293 (530)
T ss_dssp SCCCCCC--CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTT
T ss_pred cccCCCCCChhHHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhcc
Confidence 2333 23455444332221 222 46777888887753 5677888888887775 68
Q ss_pred CHH-------HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC--HhhHHHHHHHHHHcCC
Q 004470 551 EMV-------KAHELLRDMLDKGLQPSVVTFNVLMNGFCMSGMIEDGEKLLKWMLEKGLKPN--AATYNPLIKQHCLRND 621 (751)
Q Consensus 551 ~~~-------~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~g~~p~--~~~~~~l~~~~~~~g~ 621 (751)
+++ +|..+|++.++.-.+.+...|..++..+.+.|++++|..+|+++++. .|+ ...|..++..+.+.|+
T Consensus 294 ~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~ 371 (530)
T 2ooe_A 294 DMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEG 371 (530)
T ss_dssp CCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS--SSSCHHHHHHHHHHHHHHHHH
T ss_pred chhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCc--cccCchHHHHHHHHHHHHhcC
Confidence 876 89999999886323556888889999999999999999999999885 444 2478888888888999
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHH-HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 004470 622 MRTTAKIYKGMCAQGITPDGNTYNILLQG-HCKARNMKEAWFLHKEMVQKGFNLTTSSYNALIKGFLKRKKYLEARELFE 700 (751)
Q Consensus 622 ~~~A~~~~~~m~~~g~~p~~~~~~~li~~-~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 700 (751)
+++|.++|++.++.. +.+...|...+.. +...|+.++|..+|+++++..+. ++..|..++..+.+.|+.++|..+|+
T Consensus 372 ~~~A~~~~~~Al~~~-~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~p~-~~~~~~~~~~~~~~~g~~~~Ar~~~~ 449 (530)
T 2ooe_A 372 IKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGD-IPEYVLAYIDYLSHLNEDNNTRVLFE 449 (530)
T ss_dssp HHHHHHHHHHHHTCT-TCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHTTTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcc-CCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHCCC-CHHHHHHHHHHHHhCCCHhhHHHHHH
Confidence 999999999998752 2233333332222 34689999999999999887543 78899999999999999999999999
Q ss_pred HHHHCC-CCC--CHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCC
Q 004470 701 EMRRGG-LVA--DREIYYFFVDINFEEGNTEITLELCDAAIECYL 742 (751)
Q Consensus 701 ~~~~~~-~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 742 (751)
+++..+ ..| ....|...+....+.|+.+.+.++.+++++...
T Consensus 450 ~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~~~p 494 (530)
T 2ooe_A 450 RVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFR 494 (530)
T ss_dssp HHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHTH
T ss_pred HHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc
Confidence 999863 122 244777778888888999999999999887654
No 21
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.83 E-value=8.6e-17 Score=177.97 Aligned_cols=428 Identities=13% Similarity=0.090 Sum_probs=287.2
Q ss_pred HhhhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHcCCCCCchhhhHHHHHHHHHhhhcCCCChhhHHHHHHHHHhc
Q 004470 119 DWACLRREPILEARCIVVQISVAAKDLKTAHGLIHDFWAKPNLDASIAFTHFVERLIYTYKDWGSDPHVFDIFFQVLVEA 198 (751)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~ 198 (751)
+.+....|.+..++..++.. ...|++++|+.++++++... |.++..|..++..+.+.
T Consensus 3 e~al~~~P~~~~~w~~l~~~-~~~~~~~~a~~~~e~al~~~----------------------P~~~~~w~~~~~~~~~~ 59 (530)
T 2ooe_A 3 EKKLEENPYDLDAWSILIRE-AQNQPIDKARKTYERLVAQF----------------------PSSGRFWKLYIEAEIKA 59 (530)
T ss_dssp HHHHHHCTTCHHHHHHHHHH-HHSSCHHHHHHHHHHHHTTC----------------------TTCHHHHHHHHHHHHHT
T ss_pred hhHhhhCCCCHHHHHHHHHH-HHhCCHHHHHHHHHHHHHHC----------------------CCCHHHHHHHHHHHHhc
Confidence 44455678888888888874 67899999999999998765 77888999999999999
Q ss_pred CChhHHHHHHHHHHhCCCccCHHhHHHHHHHHHhCCCCHHHHHH----HHHhchhc-CCCc-CHHHHHHHHHHHHh----
Q 004470 199 RKLNEARKLFEKLLNYGLVISVDSCNLFLSRLSNTCDGLRMVVK----SFTEFPEL-GICW-NTASYNIMIHCLCR---- 268 (751)
Q Consensus 199 g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~l~~~~~~~~~a~~----~~~~~~~~-~~~~-~~~~~~~li~~~~~---- 268 (751)
|++++|..+|++++.. .|+...+...+.-.....|+.+.|++ +|+++... |..| +...|...+....+
T Consensus 60 ~~~~~a~~~~~ral~~--~p~~~lw~~~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~ 137 (530)
T 2ooe_A 60 KNYDKVEKLFQRCLMK--VLHIDLWKCYLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAV 137 (530)
T ss_dssp TCHHHHHHHHHHHTTT--CCCHHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCC
T ss_pred CCHHHHHHHHHHHHhc--CCChHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCc
Confidence 9999999999999987 46766666655544444566666654 77777543 4333 56778888776655
Q ss_pred -----cCCHHHHHHHHHHHHhcCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcC
Q 004470 269 -----FGKIKEAHLLLLQMELRGCSPD---VVSFSTIINGYCYLGELQRVLKLIEEMQIKGLKPNPYTYNSVVRLLCKTS 340 (751)
Q Consensus 269 -----~g~~~~A~~~~~~m~~~g~~p~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g 340 (751)
.|++++|..+|++..+. |. ...|.......-..|. ..+..++. .+.+
T Consensus 138 ~~~~~~~~~~~a~~~y~~al~~---P~~~~~~~~~~~~~~e~~~~~-~~~~~~l~---------------------~~~~ 192 (530)
T 2ooe_A 138 GSYAENQRITAVRRVYQRGCVN---PMINIEQLWRDYNKYEEGINI-HLAKKMIE---------------------DRSR 192 (530)
T ss_dssp SSTTHHHHHHHHHHHHHHHTTS---CCTTHHHHHHHHHHHHHHHCH-HHHHHHHH---------------------TTHH
T ss_pred ccHHHHhHHHHHHHHHHHHHhc---hhhhHHHHHHHHHHHHHhhch-hHHHHHHH---------------------HhhH
Confidence 78899999999998873 33 2333322221111110 00111110 0123
Q ss_pred CHHHHHHHHHHH------HHCC---CCCC--------HHHHHHHHHHHHHc----CCH----HHHHHHHHHHHhCCCCCC
Q 004470 341 KVVEAETILREM------MNQG---IVPD--------NVIYTTLIDGFCKM----GNV----AAAYRLFDEMRGLNIIPD 395 (751)
Q Consensus 341 ~~~~A~~~~~~m------~~~g---~~p~--------~~~~~~li~~~~~~----g~~----~~A~~~~~~m~~~~~~p~ 395 (751)
++++|..+++++ .+.. ++|+ ...|...+...... ++. +.|..+|++.....+. +
T Consensus 193 ~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~p~-~ 271 (530)
T 2ooe_A 193 DYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVLGH-H 271 (530)
T ss_dssp HHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHHTT-C
T ss_pred HHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhCCC-C
Confidence 445555555442 1111 2333 23455444332221 222 3667777777765432 5
Q ss_pred HHHHHHHHHHHHh-------cCCHH-------HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCC
Q 004470 396 LLTYTAIICGFCL-------TGKMV-------EAEKLFHEMLGRGLEPDEIVYTALIDGYCKAGGMKKAFSLHNNMVHMR 461 (751)
Q Consensus 396 ~~~~~~li~~~~~-------~g~~~-------~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 461 (751)
...|..++..+.. .|+++ +|..++++.++.-.+.+...+..++..+.+.|++++|..+|+++++..
T Consensus 272 ~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~ 351 (530)
T 2ooe_A 272 PDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIE 351 (530)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSS
T ss_pred HHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCcc
Confidence 6777777776664 67766 888888888763123357778888888888888888888888888753
Q ss_pred CCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH-HHHHcCCHHHHHHHHHHHHHCCCCCCHHHH
Q 004470 462 LTPN-VVTYTALADGLCKSGELETANELLHEMCRKGLQLNIYTYNSIVN-GLCKAGNILQAVKLMEDMEVAGFHPDTFTY 539 (751)
Q Consensus 462 ~~~~-~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~~~~li~-~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 539 (751)
+. + ...|..++..+.+.|++++|.++|++..+.... +...|...+. .+...|+.++|..+|+...+.. +.+...|
T Consensus 352 p~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~-~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~-p~~~~~~ 428 (530)
T 2ooe_A 352 DI-DPTLVYIQYMKFARRAEGIKSGRMIFKKAREDART-RHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY-GDIPEYV 428 (530)
T ss_dssp SS-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTC-CTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHH-TTCHHHH
T ss_pred cc-CchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCC-chHHHHHHHHHHHHHcCChhHHHHHHHHHHHHC-CCCHHHH
Confidence 22 3 247888888888888888888888888876322 3333322222 2346888999999999887764 4567888
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhCCC-CC--CHHHHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 004470 540 TTIMDAYCKSGEMVKAHELLRDMLDKGL-QP--SVVTFNVLMNGFCMSGMIEDGEKLLKWMLEK 600 (751)
Q Consensus 540 ~~li~~~~~~g~~~~A~~~~~~~~~~~~-~p--~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~ 600 (751)
..++..+.+.|+.++|..+|++....+. .| ....|...+......|+.+.+..+.+++.+.
T Consensus 429 ~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~~ 492 (530)
T 2ooe_A 429 LAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTA 492 (530)
T ss_dssp HHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 8888888888999999999999887632 22 2447777788778889999999988888875
No 22
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.82 E-value=1e-17 Score=172.89 Aligned_cols=282 Identities=12% Similarity=0.043 Sum_probs=149.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 004470 293 SFSTIINGYCYLGELQRVLKLIEEMQIKGLKPNPYTYNSVVRLLCKTSKVVEAETILREMMNQGIVPDNVIYTTLIDGFC 372 (751)
Q Consensus 293 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~ 372 (751)
.+..+...+...|++++|+++++++.+.. +.+...+..++..+...|++++|...++++.+.. +.+..++..+...+.
T Consensus 24 ~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~ 101 (330)
T 3hym_B 24 VVVSLAERHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAVGCYYL 101 (330)
T ss_dssp THHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHH
Confidence 34444555555555555555555555442 2234444445555555555555555555555542 223445555555555
Q ss_pred HcC-CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHH
Q 004470 373 KMG-NVAAAYRLFDEMRGLNIIPDLLTYTAIICGFCLTGKMVEAEKLFHEMLGRGLEPDEIVYTALIDGYCKAGGMKKAF 451 (751)
Q Consensus 373 ~~g-~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~ 451 (751)
..| ++++|.+.|++..+.... +...|..+...+...|++++|++.++++.+.. +.+...+..+...+...|++++|.
T Consensus 102 ~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~ 179 (330)
T 3hym_B 102 MVGHKNEHARRYLSKATTLEKT-YGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM-KGCHLPMLYIGLEYGLTNNSKLAE 179 (330)
T ss_dssp HSCSCHHHHHHHHHHHHTTCTT-CTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCSHHHHHHHHHHHHTTCHHHHH
T ss_pred HhhhhHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHhhHHHHH
Confidence 555 555555555555554322 34455555555555555555555555555442 223344444555555556666666
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--------CCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 004470 452 SLHNNMVHMRLTPNVVTYTALADGLCKSGELETANELLHEMCRKG--------LQLNIYTYNSIVNGLCKAGNILQAVKL 523 (751)
Q Consensus 452 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g--------~~~~~~~~~~li~~~~~~g~~~~A~~~ 523 (751)
..++++.+..+. +..++..+...+...|++++|...++++.+.. .+.+...+..+...+...|++++|...
T Consensus 180 ~~~~~al~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 258 (330)
T 3hym_B 180 RFFSQALSIAPE-DPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDY 258 (330)
T ss_dssp HHHHHHHTTCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHhCCC-ChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 666555554322 45555555556666666666666665554431 022334555555566666666666666
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 004470 524 MEDMEVAGFHPDTFTYTTIMDAYCKSGEMVKAHELLRDMLDKGLQPSVVTFNVLMNGF 581 (751)
Q Consensus 524 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~ 581 (751)
++++.+.. +.+...+..+...+.+.|++++|.+.++++.+.. +.+...+..+..++
T Consensus 259 ~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~ 314 (330)
T 3hym_B 259 HRQALVLI-PQNASTYSAIGYIHSLMGNFENAVDYFHTALGLR-RDDTFSVTMLGHCI 314 (330)
T ss_dssp HHHHHHHS-TTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTC-SCCHHHHHHHHHHH
T ss_pred HHHHHhhC-ccchHHHHHHHHHHHHhccHHHHHHHHHHHHccC-CCchHHHHHHHHHH
Confidence 66655543 3345555556666666666666666666555442 33455555555544
No 23
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.82 E-value=2.4e-18 Score=180.98 Aligned_cols=290 Identities=10% Similarity=0.001 Sum_probs=203.6
Q ss_pred cCChhHHHH-HHHHHHhCCCC---CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHH
Q 004470 444 AGGMKKAFS-LHNNMVHMRLT---PNVVTYTALADGLCKSGELETANELLHEMCRKGLQLNIYTYNSIVNGLCKAGNILQ 519 (751)
Q Consensus 444 ~g~~~~A~~-~~~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~ 519 (751)
.|++++|.. .+++..+.... .+...+..+...+.+.|++++|...++++.+... .+...+..+..++...|++++
T Consensus 38 ~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~ 116 (368)
T 1fch_A 38 LSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDP-KHMEAWQYLGTTQAENEQELL 116 (368)
T ss_dssp --------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCT-TCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCcCHHH
Confidence 355555655 55544433211 1234455666666666666666666666666532 255566666666666666666
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHH---------------HHHHHHhc
Q 004470 520 AVKLMEDMEVAGFHPDTFTYTTIMDAYCKSGEMVKAHELLRDMLDKGLQPSVVTFNV---------------LMNGFCMS 584 (751)
Q Consensus 520 A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~---------------li~~~~~~ 584 (751)
|...++++.+.. +.+..++..+...+...|++++|.+.++++.+.. +.+...+.. .+..+...
T Consensus 117 A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (368)
T 1fch_A 117 AISALRRCLELK-PDNQTALMALAVSFTNESLQRQACEILRDWLRYT-PAYAHLVTPAEEGAGGAGLGPSKRILGSLLSD 194 (368)
T ss_dssp HHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-TTTGGGCC---------------CTTHHHHHH
T ss_pred HHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHhhhhcccHHHHHHHHHhhc
Confidence 666666666554 4456666666666666666666766666666543 112111111 13333488
Q ss_pred CChhHHHHHHHHHHHcCCCC-CHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 004470 585 GMIEDGEKLLKWMLEKGLKP-NAATYNPLIKQHCLRNDMRTTAKIYKGMCAQGITPDGNTYNILLQGHCKARNMKEAWFL 663 (751)
Q Consensus 585 g~~~~A~~l~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~ 663 (751)
|++++|...++++.+..... +..++..+...|...|++++|.+.++++++.. +.+..++..++..+.+.|++++|+..
T Consensus 195 ~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~ 273 (368)
T 1fch_A 195 SLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR-PNDYLLWNKLGATLANGNQSEEAVAA 273 (368)
T ss_dssp HHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 99999999999998864321 47888899999999999999999999998853 34678899999999999999999999
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-----------HHHHHHHHHHHHhcCChhHHHH
Q 004470 664 HKEMVQKGFNLTTSSYNALIKGFLKRKKYLEARELFEEMRRGGLVAD-----------REIYYFFVDINFEEGNTEITLE 732 (751)
Q Consensus 664 ~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-----------~~~~~~l~~~~~~~g~~~~A~~ 732 (751)
++++++..+. +...+..++.+|.+.|++++|...++++++.. +.+ ...|..++.++...|++++|..
T Consensus 274 ~~~al~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 351 (368)
T 1fch_A 274 YRRALELQPG-YIRSRYNLGISCINLGAHREAVEHFLEALNMQ-RKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGA 351 (368)
T ss_dssp HHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-HTC------CCCCCHHHHHHHHHHHHHHTCGGGHHH
T ss_pred HHHHHHhCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCCCccccccchhhHHHHHHHHHHHHhCChHhHHH
Confidence 9999987544 78899999999999999999999999998743 222 6889999999999999999999
Q ss_pred HHHHHHH
Q 004470 733 LCDAAIE 739 (751)
Q Consensus 733 ~~~~~~~ 739 (751)
++++.++
T Consensus 352 ~~~~~l~ 358 (368)
T 1fch_A 352 ADARDLS 358 (368)
T ss_dssp HHTTCHH
T ss_pred hHHHHHH
Confidence 9886654
No 24
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.80 E-value=1.5e-17 Score=171.16 Aligned_cols=287 Identities=13% Similarity=0.120 Sum_probs=127.9
Q ss_pred HHHHhCCCCHHHHHHHHHhchhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCH
Q 004470 228 SRLSNTCDGLRMVVKSFTEFPELGICWNTASYNIMIHCLCRFGKIKEAHLLLLQMELRGCSPDVVSFSTIINGYCYLGEL 307 (751)
Q Consensus 228 ~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~ 307 (751)
..+....|++++|.++++++. ++.+|..|+.++.+.|++++|++.|.+. +|..+|..++..+...|++
T Consensus 10 ~~ll~~~~~ld~A~~fae~~~------~~~vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~V~~~ae~~g~~ 77 (449)
T 1b89_A 10 QVLIEHIGNLDRAYEFAERCN------EPAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNW 77 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHccCHHHHHHHHHhCC------ChHHHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHHHHHHHHhCCCH
Confidence 334446688999999998882 3358999999999999999999999653 5777899999999999999
Q ss_pred HHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 004470 308 QRVLKLIEEMQIKGLKPNPYTYNSVVRLLCKTSKVVEAETILREMMNQGIVPDNVIYTTLIDGFCKMGNVAAAYRLFDEM 387 (751)
Q Consensus 308 ~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 387 (751)
++|++.++...+. .+++.+.+.++.+|.+.|+++++.++++ .|+..+|+.+.+.|...|++++|...|..+
T Consensus 78 EeAi~yl~~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a 148 (449)
T 1b89_A 78 EELVKYLQMARKK--ARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV 148 (449)
T ss_dssp ---------------------------------CHHHHTTTTT-------CC----------------CTTTHHHHHHHT
T ss_pred HHHHHHHHHHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh
Confidence 9999977777664 4567888999999999999999888774 367779999999999999999999999876
Q ss_pred HhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHH
Q 004470 388 RGLNIIPDLLTYTAIICGFCLTGKMVEAEKLFHEMLGRGLEPDEIVYTALIDGYCKAGGMKKAFSLHNNMVHMRLTPNVV 467 (751)
Q Consensus 388 ~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 467 (751)
..|..++.++.+.|++++|++.++++ .++.+|..++.+|+..|+++.|......+. .++.
T Consensus 149 ---------~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~-----~~ad 208 (449)
T 1b89_A 149 ---------SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHIV-----VHAD 208 (449)
T ss_dssp ---------TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTTT-----TCHH
T ss_pred ---------hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHHH-----hCHh
Confidence 26899999999999999999999988 278899999999999999999966544322 3444
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHCCCCC------CHHHH
Q 004470 468 TYTALADGLCKSGELETANELLHEMCRKGLQLNIYTYNSIVNGLCKA--GNILQAVKLMEDMEVAGFHP------DTFTY 539 (751)
Q Consensus 468 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~~~~li~~~~~~--g~~~~A~~~~~~~~~~~~~~------~~~~~ 539 (751)
-...++..|.+.|.+++|..+++...... +-....|.-+..+|++- +++.+.++.|.. +.+++| +...|
T Consensus 209 ~l~~lv~~Yek~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~ky~p~k~~ehl~~~~~--~ini~k~~~~~~~~~~w 285 (449)
T 1b89_A 209 ELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMREHLELFWS--RVNIPKVLRAAEQAHLW 285 (449)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTTCHHHHHHHHHHHST--TSCHHHHHHHHHTTTCH
T ss_pred hHHHHHHHHHHCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH--HhcCcHHHHHHHHHHHH
Confidence 45578888999999999999999887664 44566777777666654 244444444432 122222 34557
Q ss_pred HHHHHHHHHcCCHHHHHHH
Q 004470 540 TTIMDAYCKSGEMVKAHEL 558 (751)
Q Consensus 540 ~~li~~~~~~g~~~~A~~~ 558 (751)
..+.-.|.+.++++.|...
T Consensus 286 ~e~~~ly~~~~e~d~A~~t 304 (449)
T 1b89_A 286 AELVFLYDKYEEYDNAIIT 304 (449)
T ss_dssp HHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHhhchHHHHHHH
Confidence 7788888888888888763
No 25
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.79 E-value=1.6e-17 Score=174.62 Aligned_cols=256 Identities=11% Similarity=-0.016 Sum_probs=140.4
Q ss_pred hcCCHHHHHH-HHHHHHHCCC---CCCcccHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHH
Q 004470 303 YLGELQRVLK-LIEEMQIKGL---KPNPYTYNSVVRLLCKTSKVVEAETILREMMNQGIVPDNVIYTTLIDGFCKMGNVA 378 (751)
Q Consensus 303 ~~g~~~~A~~-~~~~m~~~g~---~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~ 378 (751)
..|++++|++ .+++...... ..+...+..+...+...|++++|...++++.+.. +.+..++..+...|.+.|+++
T Consensus 37 ~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~ 115 (368)
T 1fch_A 37 WLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQEL 115 (368)
T ss_dssp ---------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHH
Confidence 3467777777 6665543311 1135567777788888888888888888887764 446677777888888888888
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHH---------------HHHHHHH
Q 004470 379 AAYRLFDEMRGLNIIPDLLTYTAIICGFCLTGKMVEAEKLFHEMLGRGLEPDEIVYTA---------------LIDGYCK 443 (751)
Q Consensus 379 ~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~---------------li~~~~~ 443 (751)
+|.+.|+++.+..+. +..++..+...+...|++++|++.++++...... +...+.. .+..+..
T Consensus 116 ~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (368)
T 1fch_A 116 LAISALRRCLELKPD-NQTALMALAVSFTNESLQRQACEILRDWLRYTPA-YAHLVTPAEEGAGGAGLGPSKRILGSLLS 193 (368)
T ss_dssp HHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTT-TGGGCC---------------CTTHHHHH
T ss_pred HHHHHHHHHHhcCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHhhhhcccHHHHHHHHHhh
Confidence 888888887766533 6777777778888888888888888887765321 1111111 1112224
Q ss_pred cCChhHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 004470 444 AGGMKKAFSLHNNMVHMRLTP-NVVTYTALADGLCKSGELETANELLHEMCRKGLQLNIYTYNSIVNGLCKAGNILQAVK 522 (751)
Q Consensus 444 ~g~~~~A~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~ 522 (751)
.|++++|...++++.+..+.. +..++..+...+.+.|++++|...++++.+... .+...+..+...+...|++++|..
T Consensus 194 ~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~l~~~~~~~g~~~~A~~ 272 (368)
T 1fch_A 194 DSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRP-NDYLLWNKLGATLANGNQSEEAVA 272 (368)
T ss_dssp HHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred cccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-CCHHHHHHHHHHHHHcCCHHHHHH
Confidence 455555555555554432211 244445555555555555555555555444321 134444455555555555555555
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 004470 523 LMEDMEVAGFHPDTFTYTTIMDAYCKSGEMVKAHELLRDML 563 (751)
Q Consensus 523 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 563 (751)
.++++.+.. +.+..++..+...|.+.|++++|...|+++.
T Consensus 273 ~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 312 (368)
T 1fch_A 273 AYRRALELQ-PGYIRSRYNLGISCINLGAHREAVEHFLEAL 312 (368)
T ss_dssp HHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 555544432 3334444445555555555555555554444
No 26
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.79 E-value=2.2e-16 Score=172.17 Aligned_cols=386 Identities=12% Similarity=-0.005 Sum_probs=240.6
Q ss_pred CcccHHHHHHHHHhcCCHHHHHHHHHHHHHC--------CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-----C
Q 004470 325 NPYTYNSVVRLLCKTSKVVEAETILREMMNQ--------GIVPDNVIYTTLIDGFCKMGNVAAAYRLFDEMRGL-----N 391 (751)
Q Consensus 325 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--------g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-----~ 391 (751)
....|+.|...+...|++++|++.|++.++. ..+....+|+.+...|...|++++|...+++..+. +
T Consensus 50 ~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~ 129 (472)
T 4g1t_A 50 KATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSS 129 (472)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhccc
Confidence 4566888888888899999999888876542 11234567888888888888888888888877542 1
Q ss_pred -CCC-CHHHHHHHHHHHHh--cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH---HHHcCChhHHHHHHHHHHhCCCCC
Q 004470 392 -IIP-DLLTYTAIICGFCL--TGKMVEAEKLFHEMLGRGLEPDEIVYTALIDG---YCKAGGMKKAFSLHNNMVHMRLTP 464 (751)
Q Consensus 392 -~~p-~~~~~~~li~~~~~--~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~---~~~~g~~~~A~~~~~~~~~~~~~~ 464 (751)
..+ ...++..+..++.. .+++++|++.|++.++.. +-+...+..+... +...++.++|++.+++..+..+.
T Consensus 130 ~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~-p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~- 207 (472)
T 4g1t_A 130 PYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKK-PKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPD- 207 (472)
T ss_dssp SSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSS-
T ss_pred ccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCc-
Confidence 111 34555555545544 456888888888887753 2245555554444 34456777888888887776433
Q ss_pred CHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 004470 465 NVVTYTALADGLCK----SGELETANELLHEMCRKGLQLNIYTYNSIVNGLCKAGNILQAVKLMEDMEVAGFHPDTFTYT 540 (751)
Q Consensus 465 ~~~~~~~li~~~~~----~g~~~~A~~l~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 540 (751)
+..++..+...+.. .|++++|.+.+++...... .+...+..+...+...|++++|...+++..+.. +.+..++.
T Consensus 208 ~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~ 285 (472)
T 4g1t_A 208 NQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAP-GVTDVLRSAAKFYRRKDEPDKAIELLKKALEYI-PNNAYLHC 285 (472)
T ss_dssp CHHHHHHHHHHHHHCC------CHHHHHHHHHHHHCS-SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHH
T ss_pred chHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCc-cHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhC-CChHHHHH
Confidence 55566555555443 3567788888888777643 366777788888888888888888888887764 45566666
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHHcC
Q 004470 541 TIMDAYCKSGEMVKAHELLRDMLDKGLQPSVVTFNVLMNGFCMSGMIEDGEKLLKWMLEKGLKPNAATYNPLIKQHCLRN 620 (751)
Q Consensus 541 ~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~g~~p~~~~~~~l~~~~~~~g 620 (751)
.+...|...+.... ... . ..........+..++|...+++..+.. +.+..++..+...|...|
T Consensus 286 ~lg~~y~~~~~~~~---------~~~-~------~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~lg~~~~~~~ 348 (472)
T 4g1t_A 286 QIGCCYRAKVFQVM---------NLR-E------NGMYGKRKLLELIGHAVAHLKKADEAN-DNLFRVCSILASLHALAD 348 (472)
T ss_dssp HHHHHHHHHHHHHH---------HC-------------CHHHHHHHHHHHHHHHHHHHHHC-TTTCCCHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhh---------hHH-H------HHHHHHHHHHhhHHHHHHHHHHHhhcC-CchhhhhhhHHHHHHHhc
Confidence 66665543211111 000 0 000011112234678888888888763 235567888899999999
Q ss_pred CHHHHHHHHHHHHHCCCCCCH--HHHHHHHH-HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 004470 621 DMRTTAKIYKGMCAQGITPDG--NTYNILLQ-GHCKARNMKEAWFLHKEMVQKGFNLTTSSYNALIKGFLKRKKYLEARE 697 (751)
Q Consensus 621 ~~~~A~~~~~~m~~~g~~p~~--~~~~~li~-~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~ 697 (751)
++++|.+.|++.++....+.. ..+..+.. .+...|+.++|+..|+++++..+. ..... +....+.+
T Consensus 349 ~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~--~~~~~---------~~~~~l~~ 417 (472)
T 4g1t_A 349 QYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQK--SREKE---------KMKDKLQK 417 (472)
T ss_dssp CHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCC--CHHHH---------HHHHHHHH
T ss_pred cHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcc--cHHHH---------HHHHHHHH
Confidence 999999999999885433221 12233332 235778999999999999986543 22221 22344566
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCC
Q 004470 698 LFEEMRRGGLVADREIYYFFVDINFEEGNTEITLELCDAAIECYLV 743 (751)
Q Consensus 698 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 743 (751)
++++.++.+ +.++.+|..++.+|...|++++|++.|+++++.+..
T Consensus 418 ~~~~~l~~~-p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~ 462 (472)
T 4g1t_A 418 IAKMRLSKN-GADSEALHVLAFLQELNEKMQQADEDSERGLESGSL 462 (472)
T ss_dssp HHHHHHHHC-C-CTTHHHHHHHHHHHHHHCC---------------
T ss_pred HHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Confidence 677777654 667889999999999999999999999999997754
No 27
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.78 E-value=5.4e-18 Score=178.14 Aligned_cols=270 Identities=10% Similarity=-0.036 Sum_probs=207.3
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 004470 465 NVVTYTALADGLCKSGELETANELLHEMCRKGLQLNIYTYNSIVNGLCKAGNILQAVKLMEDMEVAGFHPDTFTYTTIMD 544 (751)
Q Consensus 465 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~ 544 (751)
+...+..+...+.+.|++++|.+.|+++.+... .+...+..+...+...|++++|+..|+++.+.. +.+..++..+..
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 141 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQDP-GDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALAV 141 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCc-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHH
Confidence 445577778888888888888888888877643 367788888888888888888888888887765 556788888888
Q ss_pred HHHHcCCHHHHHHHHHHHHhCCCC---------CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCC-CCHhhHHHHHH
Q 004470 545 AYCKSGEMVKAHELLRDMLDKGLQ---------PSVVTFNVLMNGFCMSGMIEDGEKLLKWMLEKGLK-PNAATYNPLIK 614 (751)
Q Consensus 545 ~~~~~g~~~~A~~~~~~~~~~~~~---------p~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~g~~-p~~~~~~~l~~ 614 (751)
.|...|++++|...++++.+.... .....+..+...+...|++++|...++++.+.... ++..++..+..
T Consensus 142 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~ 221 (365)
T 4eqf_A 142 SYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGV 221 (365)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHH
T ss_pred HHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHH
Confidence 888888888888888888764210 01233445577888899999999999999887432 15778889999
Q ss_pred HHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 004470 615 QHCLRNDMRTTAKIYKGMCAQGITPDGNTYNILLQGHCKARNMKEAWFLHKEMVQKGFNLTTSSYNALIKGFLKRKKYLE 694 (751)
Q Consensus 615 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 694 (751)
.|...|++++|.+.++++++.. +.+..++..++..|.+.|++++|+..++++++..+. +..++..++.+|.+.|++++
T Consensus 222 ~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~ 299 (365)
T 4eqf_A 222 LFHLSGEFNRAIDAFNAALTVR-PEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPG-FIRSRYNLGISCINLGAYRE 299 (365)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCCHH
T ss_pred HHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHHCCCHHH
Confidence 9999999999999999998853 346888999999999999999999999999987544 68899999999999999999
Q ss_pred HHHHHHHHHHCCC---C--------CCHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 004470 695 ARELFEEMRRGGL---V--------ADREIYYFFVDINFEEGNTEITLELCDAAI 738 (751)
Q Consensus 695 A~~~~~~~~~~~~---~--------~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 738 (751)
|...++++++... . .+...|..+..++...|+.+.|.+..++.+
T Consensus 300 A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~l 354 (365)
T 4eqf_A 300 AVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLGDL 354 (365)
T ss_dssp HHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTTCC
T ss_pred HHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHhhH
Confidence 9999999987321 1 135778899999999999999988776543
No 28
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.78 E-value=2.3e-16 Score=171.99 Aligned_cols=385 Identities=10% Similarity=-0.046 Sum_probs=260.3
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-----C---CCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHHC-----
Q 004470 289 PDVVSFSTIINGYCYLGELQRVLKLIEEMQIK-----G---LKPNPYTYNSVVRLLCKTSKVVEAETILREMMNQ----- 355 (751)
Q Consensus 289 p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-----g---~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----- 355 (751)
.....||.|...+...|++++|++.|++..+. + .+....+|+.+..+|...|++++|...+++..+.
T Consensus 49 ~~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~ 128 (472)
T 4g1t_A 49 FKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFS 128 (472)
T ss_dssp -CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSC
T ss_pred hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcc
Confidence 44678999999999999999999999987542 1 1223567999999999999999999999987652
Q ss_pred C-C-CCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH---HHhcCCHHHHHHHHHHHHHCCCC
Q 004470 356 G-I-VPDNVIYTTLIDGFCKM--GNVAAAYRLFDEMRGLNIIPDLLTYTAIICG---FCLTGKMVEAEKLFHEMLGRGLE 428 (751)
Q Consensus 356 g-~-~p~~~~~~~li~~~~~~--g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~---~~~~g~~~~A~~~~~~m~~~~~~ 428 (751)
+ . .....++..+..++.+. +++++|++.|++..+..+. +...+..+... +...++.++|++.+++.++.. +
T Consensus 129 ~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~-~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~-p 206 (472)
T 4g1t_A 129 SPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPK-NPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLN-P 206 (472)
T ss_dssp CSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHC-S
T ss_pred cccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcC-C
Confidence 1 1 12345677666666654 4699999999999886543 45555555544 445688889999999988763 3
Q ss_pred CCHHHHHHHHHHHHH----cCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHH
Q 004470 429 PDEIVYTALIDGYCK----AGGMKKAFSLHNNMVHMRLTPNVVTYTALADGLCKSGELETANELLHEMCRKGLQLNIYTY 504 (751)
Q Consensus 429 p~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~~ 504 (751)
.+...+..+...+.. .|+.++|...+++.....+. +..++..+...|...|++++|.+.+++..+..+. +..++
T Consensus 207 ~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~-~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~ 284 (472)
T 4g1t_A 207 DNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPG-VTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPN-NAYLH 284 (472)
T ss_dssp SCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHCSS-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHH
T ss_pred cchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCcc-HHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCC-hHHHH
Confidence 356667666655544 46788999999998887543 7888999999999999999999999999987543 66777
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 004470 505 NSIVNGLCKAGNILQAVKLMEDMEVAGFHPDTFTYTTIMDAYCKSGEMVKAHELLRDMLDKGLQPSVVTFNVLMNGFCMS 584 (751)
Q Consensus 505 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~ 584 (751)
..+..+|...+....+ .. . ..........+.+++|...+++..+.. +.+..++..+...|...
T Consensus 285 ~~lg~~y~~~~~~~~~---------~~-~------~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~lg~~~~~~ 347 (472)
T 4g1t_A 285 CQIGCCYRAKVFQVMN---------LR-E------NGMYGKRKLLELIGHAVAHLKKADEAN-DNLFRVCSILASLHALA 347 (472)
T ss_dssp HHHHHHHHHHHHHHHH---------C-------------CHHHHHHHHHHHHHHHHHHHHHC-TTTCCCHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhhh---------HH-H------HHHHHHHHHHhhHHHHHHHHHHHhhcC-CchhhhhhhHHHHHHHh
Confidence 7777666432211111 00 0 001111122334678888888887654 44566788888899999
Q ss_pred CChhHHHHHHHHHHHcCCCCCHh--hHHHHHH-HHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 004470 585 GMIEDGEKLLKWMLEKGLKPNAA--TYNPLIK-QHCLRNDMRTTAKIYKGMCAQGITPDGNTYNILLQGHCKARNMKEAW 661 (751)
Q Consensus 585 g~~~~A~~l~~~~~~~g~~p~~~--~~~~l~~-~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~ 661 (751)
|++++|+..|++.++....+... .+..+.. .+...|+.++|++.|++.++. .|+..... +..+.+.
T Consensus 348 ~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i--~~~~~~~~---------~~~~~l~ 416 (472)
T 4g1t_A 348 DQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKI--NQKSREKE---------KMKDKLQ 416 (472)
T ss_dssp TCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHS--CCCCHHHH---------HHHHHHH
T ss_pred ccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CcccHHHH---------HHHHHHH
Confidence 99999999999998864433221 2233332 235678999999999999884 45533221 2234556
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 004470 662 FLHKEMVQKGFNLTTSSYNALIKGFLKRKKYLEARELFEEMRRGG 706 (751)
Q Consensus 662 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 706 (751)
+++++.++.++. ++.+|..++.+|...|++++|++.|+++++.+
T Consensus 417 ~~~~~~l~~~p~-~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~ 460 (472)
T 4g1t_A 417 KIAKMRLSKNGA-DSEALHVLAFLQELNEKMQQADEDSERGLESG 460 (472)
T ss_dssp HHHHHHHHHCC--CTTHHHHHHHHHHHHHHCC-------------
T ss_pred HHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 667777776554 78899999999999999999999999999865
No 29
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.77 E-value=8.7e-17 Score=165.72 Aligned_cols=267 Identities=13% Similarity=0.023 Sum_probs=196.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 004470 467 VTYTALADGLCKSGELETANELLHEMCRKGLQLNIYTYNSIVNGLCKAGNILQAVKLMEDMEVAGFHPDTFTYTTIMDAY 546 (751)
Q Consensus 467 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~ 546 (751)
..+..+...+...|++++|..+++++.+.... +...+..+...+...|++++|...++++.+.. +.+..++..+...+
T Consensus 22 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~ 99 (327)
T 3cv0_A 22 ENPMEEGLSMLKLANLAEAALAFEAVCQAAPE-REEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSH 99 (327)
T ss_dssp SCHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHHHH
Confidence 34455556666666666666666666655322 55566666666666677777777666666553 44566666666667
Q ss_pred HHcCCHHHHHHHHHHHHhCCCCCCHHHHHHH--------------HH-HHHhcCChhHHHHHHHHHHHcCCCCCHhhHHH
Q 004470 547 CKSGEMVKAHELLRDMLDKGLQPSVVTFNVL--------------MN-GFCMSGMIEDGEKLLKWMLEKGLKPNAATYNP 611 (751)
Q Consensus 547 ~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l--------------i~-~~~~~g~~~~A~~l~~~~~~~g~~p~~~~~~~ 611 (751)
...|++++|.+.++++.+.. +.+...+..+ .. .+...|++++|...++++.+... .+...+..
T Consensus 100 ~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~ 177 (327)
T 3cv0_A 100 TNEHNANAALASLRAWLLSQ-PQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNP-NDAQLHAS 177 (327)
T ss_dssp HHTTCHHHHHHHHHHHHHTS-TTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHST-TCHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhC-CccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhCC-CCHHHHHH
Confidence 77777777777777666542 1122222222 22 36677889999999999887643 36778888
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 004470 612 LIKQHCLRNDMRTTAKIYKGMCAQGITPDGNTYNILLQGHCKARNMKEAWFLHKEMVQKGFNLTTSSYNALIKGFLKRKK 691 (751)
Q Consensus 612 l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 691 (751)
+...+...|++++|.+.++++.+.. +.+..++..++..+...|++++|...++++++..+. +...+..++..+.+.|+
T Consensus 178 la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~g~ 255 (327)
T 3cv0_A 178 LGVLYNLSNNYDSAAANLRRAVELR-PDDAQLWNKLGATLANGNRPQEALDAYNRALDINPG-YVRVMYNMAVSYSNMSQ 255 (327)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHhcc
Confidence 9999999999999999999998853 346788999999999999999999999999987544 78899999999999999
Q ss_pred HHHHHHHHHHHHHCCCCC------------CHHHHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 004470 692 YLEARELFEEMRRGGLVA------------DREIYYFFVDINFEEGNTEITLELCDAAIEC 740 (751)
Q Consensus 692 ~~~A~~~~~~~~~~~~~~------------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 740 (751)
+++|.+.++++.+.. +. +...+..++.++.+.|+.++|.+.++++++.
T Consensus 256 ~~~A~~~~~~a~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~ 315 (327)
T 3cv0_A 256 YDLAAKQLVRAIYMQ-VGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQNVEP 315 (327)
T ss_dssp HHHHHHHHHHHHHHH-TTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCCSHH
T ss_pred HHHHHHHHHHHHHhC-CccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence 999999999998853 22 4778889999999999999999998876654
No 30
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.75 E-value=5.9e-16 Score=156.20 Aligned_cols=258 Identities=10% Similarity=0.011 Sum_probs=173.6
Q ss_pred HHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHH
Q 004470 440 GYCKAGGMKKAFSLHNNMVHMRLTPNVVTYTALADGLCKSGELETANELLHEMCRKGLQLNIYTYNSIVNGLCKAGNILQ 519 (751)
Q Consensus 440 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~ 519 (751)
-....|++..|+...+......+.+.......+..+|...|++++|+..++. ..+|+..++..+...+...|+.++
T Consensus 8 ~~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~----~~~~~~~a~~~la~~~~~~~~~~~ 83 (291)
T 3mkr_A 8 NAFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKP----SSAPELQAVRMFAEYLASHSRRDA 83 (291)
T ss_dssp HHHHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT----TSCHHHHHHHHHHHHHHCSTTHHH
T ss_pred HHHHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc----cCChhHHHHHHHHHHHcCCCcHHH
Confidence 3445667777777666554432111123445556677777777777765543 124455666777777777777777
Q ss_pred HHHHHHHHHHCCC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 004470 520 AVKLMEDMEVAGF-HPDTFTYTTIMDAYCKSGEMVKAHELLRDMLDKGLQPSVVTFNVLMNGFCMSGMIEDGEKLLKWML 598 (751)
Q Consensus 520 A~~~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~~~ 598 (751)
|++.++++...+. +.+...+..+...+...|++++|++.+++ +.+...+..++..+.+.|++++|.+.++++.
T Consensus 84 A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~ 157 (291)
T 3mkr_A 84 IVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKELKKMQ 157 (291)
T ss_dssp HHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 7777777766543 33455566666777777777777777765 4566777777777778888888888887777
Q ss_pred HcCCCCCHhhH---HHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 004470 599 EKGLKPNAATY---NPLIKQHCLRNDMRTTAKIYKGMCAQGITPDGNTYNILLQGHCKARNMKEAWFLHKEMVQKGFNLT 675 (751)
Q Consensus 599 ~~g~~p~~~~~---~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~ 675 (751)
+.. |+.... ...+..+...|++++|..+|+++.+. .+.+...++.+..++.+.|++++|...++++++..+. +
T Consensus 158 ~~~--p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~-~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~-~ 233 (291)
T 3mkr_A 158 DQD--EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADK-CSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSG-H 233 (291)
T ss_dssp HHC--TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH-SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-C
T ss_pred hhC--cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHh-CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-C
Confidence 653 443211 11223333457888888888888876 3457778888888888888888888888888887655 7
Q ss_pred HHHHHHHHHHHHhcCCHHH-HHHHHHHHHHCCCCCCHH
Q 004470 676 TSSYNALIKGFLKRKKYLE-ARELFEEMRRGGLVADRE 712 (751)
Q Consensus 676 ~~~~~~l~~~~~~~g~~~~-A~~~~~~~~~~~~~~~~~ 712 (751)
+.++..++..+...|+.++ +.++++++++.. |.++.
T Consensus 234 ~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~-P~~~~ 270 (291)
T 3mkr_A 234 PETLINLVVLSQHLGKPPEVTNRYLSQLKDAH-RSHPF 270 (291)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHH
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhC-CCChH
Confidence 7888888888888888865 567888888753 33443
No 31
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.75 E-value=5.9e-17 Score=170.14 Aligned_cols=233 Identities=11% Similarity=-0.023 Sum_probs=124.2
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q 004470 364 YTTLIDGFCKMGNVAAAYRLFDEMRGLNIIPDLLTYTAIICGFCLTGKMVEAEKLFHEMLGRGLEPDEIVYTALIDGYCK 443 (751)
Q Consensus 364 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~ 443 (751)
+..+...+.+.|++++|.+.|+++.+..+. +..+|..+...+...|++++|+..|+++++.. +.+..++..+...|..
T Consensus 68 ~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~ 145 (365)
T 4eqf_A 68 AFEEGLKRLKEGDLPVTILFMEAAILQDPG-DAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALAVSYTN 145 (365)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCcC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHc
Confidence 444444455555555555555555443322 34445555555555555555555555554431 2234445555555555
Q ss_pred cCChhHHHHHHHHHHhCCCC---------CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHH
Q 004470 444 AGGMKKAFSLHNNMVHMRLT---------PNVVTYTALADGLCKSGELETANELLHEMCRKGLQ-LNIYTYNSIVNGLCK 513 (751)
Q Consensus 444 ~g~~~~A~~~~~~~~~~~~~---------~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~-~~~~~~~~li~~~~~ 513 (751)
.|++++|...++++.+..+. .....+..+...+...|++++|.+.++++.+.... ++...+..+...+..
T Consensus 146 ~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~ 225 (365)
T 4eqf_A 146 TSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHL 225 (365)
T ss_dssp TTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHHHH
Confidence 55555555555555443210 01222334456666667777777777776665322 145666666666666
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHH
Q 004470 514 AGNILQAVKLMEDMEVAGFHPDTFTYTTIMDAYCKSGEMVKAHELLRDMLDKGLQPSVVTFNVLMNGFCMSGMIEDGEKL 593 (751)
Q Consensus 514 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l 593 (751)
.|++++|+..++++.+.. +.+..++..+..+|.+.|++++|...|+++.+.. +.+..++..+...|...|++++|...
T Consensus 226 ~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~ 303 (365)
T 4eqf_A 226 SGEFNRAIDAFNAALTVR-PEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQ-PGFIRSRYNLGISCINLGAYREAVSN 303 (365)
T ss_dssp HTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCHHHHHHH
Confidence 677777777776666553 4456666666666666677777777666666542 33466666666666666666666666
Q ss_pred HHHHHHc
Q 004470 594 LKWMLEK 600 (751)
Q Consensus 594 ~~~~~~~ 600 (751)
++++.+.
T Consensus 304 ~~~al~~ 310 (365)
T 4eqf_A 304 FLTALSL 310 (365)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 6666553
No 32
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.75 E-value=1.3e-16 Score=164.15 Aligned_cols=238 Identities=12% Similarity=0.114 Sum_probs=67.8
Q ss_pred hcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCHHHHHH
Q 004470 268 RFGKIKEAHLLLLQMELRGCSPDVVSFSTIINGYCYLGELQRVLKLIEEMQIKGLKPNPYTYNSVVRLLCKTSKVVEAET 347 (751)
Q Consensus 268 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~ 347 (751)
+.|++++|.++++++ ++..+|..++.++.+.|++++|++.|.+. +|..+|..++..+...|++++|+.
T Consensus 15 ~~~~ld~A~~fae~~------~~~~vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~V~~~ae~~g~~EeAi~ 82 (449)
T 1b89_A 15 HIGNLDRAYEFAERC------NEPAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVK 82 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhC------CChHHHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHHHHHHHHhCCCHHHHHH
Confidence 566677777777666 23346777777777777777777777542 366677777777777777777777
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 004470 348 ILREMMNQGIVPDNVIYTTLIDGFCKMGNVAAAYRLFDEMRGLNIIPDLLTYTAIICGFCLTGKMVEAEKLFHEMLGRGL 427 (751)
Q Consensus 348 ~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 427 (751)
.++...+. .+++.+.+.|+.+|.+.|+++++.++++ .|+..+|+.+...|...|++++|...|..+
T Consensus 83 yl~~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a----- 148 (449)
T 1b89_A 83 YLQMARKK--ARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV----- 148 (449)
T ss_dssp ----------------------------CHHHHTTTTT-------CC----------------CTTTHHHHHHHT-----
T ss_pred HHHHHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh-----
Confidence 66655553 3445666677777777777777666653 145556666666666666666666666654
Q ss_pred CCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 004470 428 EPDEIVYTALIDGYCKAGGMKKAFSLHNNMVHMRLTPNVVTYTALADGLCKSGELETANELLHEMCRKGLQLNIYTYNSI 507 (751)
Q Consensus 428 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~~~~l 507 (751)
..|..++.++.+.|++++|.+.+.++ .++.+|..++.+|...|+++.|......+ ...+.-...+
T Consensus 149 ----~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L-----~~~ad~l~~l 213 (449)
T 1b89_A 149 ----SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHI-----VVHADELEEL 213 (449)
T ss_dssp ----TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTT-----TTCHHHHHHH
T ss_pred ----hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHH-----HhCHhhHHHH
Confidence 23555666666666666666666555 15556666666666666666663333221 1223333345
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 004470 508 VNGLCKAGNILQAVKLMEDMEVAGFHPDTFTYTTIMDAYC 547 (751)
Q Consensus 508 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~ 547 (751)
+..|.+.|++++|..+++...... +-....|+-+.-.|+
T Consensus 214 v~~Yek~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~ 252 (449)
T 1b89_A 214 INYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYS 252 (449)
T ss_dssp HHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHH
Confidence 555555555555555555555433 333444544444444
No 33
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.74 E-value=3.6e-16 Score=161.04 Aligned_cols=279 Identities=11% Similarity=-0.031 Sum_probs=182.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 004470 398 TYTAIICGFCLTGKMVEAEKLFHEMLGRGLEPDEIVYTALIDGYCKAGGMKKAFSLHNNMVHMRLTPNVVTYTALADGLC 477 (751)
Q Consensus 398 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~ 477 (751)
.+..+...+...|++++|+.+++++.+.. +.+...+..+...+...|++++|...++++.+..+ .+..++..+...+.
T Consensus 23 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~la~~~~ 100 (327)
T 3cv0_A 23 NPMEEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDP-KDIAVHAALAVSHT 100 (327)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCc-CCHHHHHHHHHHHH
Confidence 34455555666666666666666665542 22455555555666666666666666666555432 24555555555555
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHH-HH-HHHHcCCHHHH
Q 004470 478 KSGELETANELLHEMCRKGLQLNIYTYNSIVNGLCKAGNILQAVKLMEDMEVAGFHPDTFTYTTI-MD-AYCKSGEMVKA 555 (751)
Q Consensus 478 ~~g~~~~A~~l~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l-i~-~~~~~g~~~~A 555 (751)
..|++++|.+.++++.+.... +...+..+... .|+......+ .. .+...|++++|
T Consensus 101 ~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~----------------------~~~~~~~~~~~~~~~~~~~~~~~~A 157 (327)
T 3cv0_A 101 NEHNANAALASLRAWLLSQPQ-YEQLGSVNLQA----------------------DVDIDDLNVQSEDFFFAAPNEYREC 157 (327)
T ss_dssp HTTCHHHHHHHHHHHHHTSTT-TTTC------------------------------------------CCTTSHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhCCc-cHHHHHHHhHH----------------------HHHHHHHHHHHHhHHHHHcccHHHH
Confidence 556666666555555544221 11111111000 0111111112 22 26677888888
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 004470 556 HELLRDMLDKGLQPSVVTFNVLMNGFCMSGMIEDGEKLLKWMLEKGLKPNAATYNPLIKQHCLRNDMRTTAKIYKGMCAQ 635 (751)
Q Consensus 556 ~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 635 (751)
...++++.+.. +.+...+..+...+...|++++|.+.++++.+.. +.+...+..+...+...|++++|.+.++++.+.
T Consensus 158 ~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 235 (327)
T 3cv0_A 158 RTLLHAALEMN-PNDAQLHASLGVLYNLSNNYDSAAANLRRAVELR-PDDAQLWNKLGATLANGNRPQEALDAYNRALDI 235 (327)
T ss_dssp HHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 88888887764 4477888888888888899999999888888763 235677888888889999999999999988875
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-----------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004470 636 GITPDGNTYNILLQGHCKARNMKEAWFLHKEMVQKGFNL-----------TTSSYNALIKGFLKRKKYLEARELFEEMRR 704 (751)
Q Consensus 636 g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p-----------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 704 (751)
. +.+...+..+...+.+.|++++|.+.++++++..+.. +...|..++.++.+.|++++|..++++.++
T Consensus 236 ~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~ 314 (327)
T 3cv0_A 236 N-PGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQNVE 314 (327)
T ss_dssp C-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCCSH
T ss_pred C-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 3 3467788889999999999999999999998764432 467888999999999999999998876543
No 34
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.74 E-value=2.1e-18 Score=190.80 Aligned_cols=121 Identities=13% Similarity=0.238 Sum_probs=108.9
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHH---hcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHH
Q 004470 255 NTASYNIMIHCLCRFGKIKEAHLLLLQME---LRGCSPDVVSFSTIINGYCYLGELQRVLKLIEEMQIKGLKPNPYTYNS 331 (751)
Q Consensus 255 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~---~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ 331 (751)
-..+||+||++||+.|++++|.++|++|. ..|+.||++|||+||++||+.|++++|.++|++|.+.|+.||.+|||+
T Consensus 126 ~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYnt 205 (1134)
T 3spa_A 126 QQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAA 205 (1134)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHH
Confidence 45789999999999999999999998876 358899999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCH-HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC
Q 004470 332 VVRLLCKTSKV-VEAETILREMMNQGIVPDNVIYTTLIDGFCKMG 375 (751)
Q Consensus 332 li~~~~~~g~~-~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g 375 (751)
+|.++|+.|+. ++|.++|++|.+.|+.||..+|+.++.+..+.+
T Consensus 206 LI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~~ 250 (1134)
T 3spa_A 206 ALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRAT 250 (1134)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHHH
T ss_pred HHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHHH
Confidence 99999999984 788999999999999999999999987766543
No 35
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.74 E-value=8.5e-16 Score=155.03 Aligned_cols=256 Identities=8% Similarity=0.020 Sum_probs=210.9
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHH
Q 004470 474 DGLCKSGELETANELLHEMCRKGLQLNIYTYNSIVNGLCKAGNILQAVKLMEDMEVAGFHPDTFTYTTIMDAYCKSGEMV 553 (751)
Q Consensus 474 ~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 553 (751)
.-....|+++.|+...+.+..............+..+|...|+++.|+..++.. -+|+..++..+...+...++.+
T Consensus 7 ~~~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~~----~~~~~~a~~~la~~~~~~~~~~ 82 (291)
T 3mkr_A 7 KNAFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKPS----SAPELQAVRMFAEYLASHSRRD 82 (291)
T ss_dssp HHHHHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCTT----SCHHHHHHHHHHHHHHCSTTHH
T ss_pred HHHHHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhccc----CChhHHHHHHHHHHHcCCCcHH
Confidence 445668999999999887655422211335566788999999999999877552 3678888999999999999999
Q ss_pred HHHHHHHHHHhCCC-CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHH
Q 004470 554 KAHELLRDMLDKGL-QPSVVTFNVLMNGFCMSGMIEDGEKLLKWMLEKGLKPNAATYNPLIKQHCLRNDMRTTAKIYKGM 632 (751)
Q Consensus 554 ~A~~~~~~~~~~~~-~p~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m 632 (751)
+|.+.++++...+. +.+...+..+...+...|++++|++.+++ ..+...+..++..+.+.|++++|.+.++++
T Consensus 83 ~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~ 156 (291)
T 3mkr_A 83 AIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKELKKM 156 (291)
T ss_dssp HHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 99999999988764 44677778888999999999999999987 457788999999999999999999999999
Q ss_pred HHCCCCCCHHHH---HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 004470 633 CAQGITPDGNTY---NILLQGHCKARNMKEAWFLHKEMVQKGFNLTTSSYNALIKGFLKRKKYLEARELFEEMRRGGLVA 709 (751)
Q Consensus 633 ~~~g~~p~~~~~---~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 709 (751)
.+.. |+.... ..++..+...|++++|..+|+++++..+ .++..++.++.++.+.|++++|...++++++.. +.
T Consensus 157 ~~~~--p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p-~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~-p~ 232 (291)
T 3mkr_A 157 QDQD--EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCS-PTLLLLNGQAACHMAQGRWEAAEGVLQEALDKD-SG 232 (291)
T ss_dssp HHHC--TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSC-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TT
T ss_pred HhhC--cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CC
Confidence 9863 553221 2233444556899999999999999854 489999999999999999999999999999875 66
Q ss_pred CHHHHHHHHHHHHhcCChhH-HHHHHHHHHHcCCC
Q 004470 710 DREIYYFFVDINFEEGNTEI-TLELCDAAIECYLV 743 (751)
Q Consensus 710 ~~~~~~~l~~~~~~~g~~~~-A~~~~~~~~~~~~~ 743 (751)
++.++..++..+...|+.++ +.++++++++..+.
T Consensus 233 ~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P~ 267 (291)
T 3mkr_A 233 HPETLINLVVLSQHLGKPPEVTNRYLSQLKDAHRS 267 (291)
T ss_dssp CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTT
T ss_pred CHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCC
Confidence 88999999999999999976 67899999987654
No 36
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.72 E-value=7.8e-18 Score=186.32 Aligned_cols=152 Identities=14% Similarity=0.113 Sum_probs=128.1
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH---CCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 004470 289 PDVVSFSTIINGYCYLGELQRVLKLIEEMQI---KGLKPNPYTYNSVVRLLCKTSKVVEAETILREMMNQGIVPDNVIYT 365 (751)
Q Consensus 289 p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~ 365 (751)
--..|||+||++||+.|++++|.++|++|.+ .|+.||++|||+||++||+.|++++|.++|++|.+.|+.||.+|||
T Consensus 125 ~~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYn 204 (1134)
T 3spa_A 125 GQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYA 204 (1134)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHH
T ss_pred hHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHH
Confidence 3467999999999999999999999988764 5899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCC-HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC------HHHHHHHH
Q 004470 366 TLIDGFCKMGN-VAAAYRLFDEMRGLNIIPDLLTYTAIICGFCLTGKMVEAEKLFHEMLGRGLEPD------EIVYTALI 438 (751)
Q Consensus 366 ~li~~~~~~g~-~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~------~~~~~~li 438 (751)
+||+++|+.|+ .++|.++|++|.+.|+.||..+|++++.+..+. ..++..+++ ..++.|+ ..+...|.
T Consensus 205 tLI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~----~vL~~Vrkv-~P~f~p~~~~~~~~~t~~LL~ 279 (1134)
T 3spa_A 205 AALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRA----TVLKAVHKV-KPTFSLPPQLPPPVNTSKLLR 279 (1134)
T ss_dssp HHHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHH----HHHHHHGGG-CCCCCCCCCCCCCCCCCTTTH
T ss_pred HHHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHH----HHHHHHHHh-CcccCCCCCCcccccchHHHH
Confidence 99999999998 478999999999999999999999999766554 344444444 3345544 34455566
Q ss_pred HHHHHcC
Q 004470 439 DGYCKAG 445 (751)
Q Consensus 439 ~~~~~~g 445 (751)
+.|.+.+
T Consensus 280 dl~s~d~ 286 (1134)
T 3spa_A 280 DVYAKDG 286 (1134)
T ss_dssp HHHCCCS
T ss_pred HHHccCC
Confidence 6666554
No 37
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.68 E-value=3.7e-15 Score=160.55 Aligned_cols=307 Identities=13% Similarity=0.041 Sum_probs=167.6
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCh---hHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 004470 411 KMVEAEKLFHEMLGRGLEPDEIVYTALIDGYCKAGGM---KKAFSLHNNMVHMRLTPNVVTYTALADGLCKSGELETANE 487 (751)
Q Consensus 411 ~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~---~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 487 (751)
+.++|+..|++..+.|... .+..|...|...+.. .++.+.+......| +...+..|...|...+.++++..
T Consensus 89 ~~~~A~~~~~~Aa~~g~~~---A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g---~~~a~~~Lg~~y~~~~~~~~~~~ 162 (452)
T 3e4b_A 89 EHHEAESLLKKAFANGEGN---TLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG---YPEAGLAQVLLYRTQGTYDQHLD 162 (452)
T ss_dssp HHHHHHHHHHHHHHTTCSS---CHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT---CTTHHHHHHHHHHHHTCGGGGHH
T ss_pred CHHHHHHHHHHHHHCCCHH---HHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcccCHH
Confidence 4445555555555443221 333344444333322 22333344333332 23444555555555554433333
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc----CCHHHHHHHHH
Q 004470 488 LLHEMCRKGLQLNIYTYNSIVNGLCKAG---NILQAVKLMEDMEVAGFHPDTFTYTTIMDAYCKS----GEMVKAHELLR 560 (751)
Q Consensus 488 l~~~m~~~g~~~~~~~~~~li~~~~~~g---~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~----g~~~~A~~~~~ 560 (751)
....+.+.-...++..+..+...|...| +.++|+..|++..+.| +++...+..+...|... +++++|.+.|+
T Consensus 163 ~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g-~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~ 241 (452)
T 3e4b_A 163 DVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRG-TVTAQRVDSVARVLGDATLGTPDEKTAQALLE 241 (452)
T ss_dssp HHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT-CSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHH
Confidence 3222221111112225566666666666 6677777777776666 45555555555555443 56777777777
Q ss_pred HHHhCCCCCCHHHHHHHHHH-H--HhcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHHcC-----CHHHHHHHHHHH
Q 004470 561 DMLDKGLQPSVVTFNVLMNG-F--CMSGMIEDGEKLLKWMLEKGLKPNAATYNPLIKQHCLRN-----DMRTTAKIYKGM 632 (751)
Q Consensus 561 ~~~~~~~~p~~~~~~~li~~-~--~~~g~~~~A~~l~~~~~~~g~~p~~~~~~~l~~~~~~~g-----~~~~A~~~~~~m 632 (751)
+.. .| +...+..|... + ...++.++|.+.|++..+.| +...+..|...|. .| +.++|.++|++.
T Consensus 242 ~aa-~g---~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~A 313 (452)
T 3e4b_A 242 KIA-PG---YPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKA 313 (452)
T ss_dssp HHG-GG---STHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTT
T ss_pred HHc-CC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHH
Confidence 766 32 44555555555 3 34667777777777777655 5555566666654 44 777777777776
Q ss_pred HHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHH
Q 004470 633 CAQGITPDGNTYNILLQGHCK----ARNMKEAWFLHKEMVQKGFNLTTSSYNALIKGFLK----RKKYLEARELFEEMRR 704 (751)
Q Consensus 633 ~~~g~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~ 704 (751)
. .| +...+..|...|.. ..++++|...|++..+.| ++.....|...|.. ..+.++|..+|+.+.+
T Consensus 314 a-~g---~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~ 386 (452)
T 3e4b_A 314 V-GR---EVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNG---QNSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKA 386 (452)
T ss_dssp T-TT---CHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTT---CTTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHT
T ss_pred h-CC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhC---hHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHH
Confidence 6 32 55666666666655 337778888888777765 33455566666653 3477788888888777
Q ss_pred CCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 004470 705 GGLVADREIYYFFVDINFEEGNTEITLELCDAAIEC 740 (751)
Q Consensus 705 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 740 (751)
.| .++.......+......++.++|.++.++..+.
T Consensus 387 ~g-~~~a~~~l~~l~~~~~~~~~~~a~~~~~~~~~~ 421 (452)
T 3e4b_A 387 QD-TPEANDLATQLEAPLTPAQRAEGQRLVQQELAA 421 (452)
T ss_dssp TC-CHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred CC-CHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHh
Confidence 66 222222222222222334566677766665543
No 38
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.67 E-value=1.6e-14 Score=143.04 Aligned_cols=226 Identities=15% Similarity=0.087 Sum_probs=115.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC--CCC----HHHHH
Q 004470 467 VTYTALADGLCKSGELETANELLHEMCRKGLQLNIYTYNSIVNGLCKAGNILQAVKLMEDMEVAGF--HPD----TFTYT 540 (751)
Q Consensus 467 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~--~~~----~~~~~ 540 (751)
..+..+...+...|++++|.+.++++.+.. .+...+..+..++...|++++|...++++.+... .++ ..++.
T Consensus 6 ~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 83 (258)
T 3uq3_A 6 DKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFA 83 (258)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHH
Confidence 445555555555566666666555555554 3455555555555555555555555555544220 001 34444
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHHcC
Q 004470 541 TIMDAYCKSGEMVKAHELLRDMLDKGLQPSVVTFNVLMNGFCMSGMIEDGEKLLKWMLEKGLKPNAATYNPLIKQHCLRN 620 (751)
Q Consensus 541 ~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~g~~p~~~~~~~l~~~~~~~g 620 (751)
.+...+...|++++|...++++.+. .|+. ..+...|
T Consensus 84 ~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~------------------------------------------~~~~~~~ 119 (258)
T 3uq3_A 84 RIGNAYHKLGDLKKTIEYYQKSLTE--HRTA------------------------------------------DILTKLR 119 (258)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH--CCCH------------------------------------------HHHHHHH
T ss_pred HHHHHHHHcccHHHHHHHHHHHHhc--Cchh------------------------------------------HHHHHHh
Confidence 4455555555555555555554442 2221 1233444
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 004470 621 DMRTTAKIYKGMCAQGITPDGNTYNILLQGHCKARNMKEAWFLHKEMVQKGFNLTTSSYNALIKGFLKRKKYLEARELFE 700 (751)
Q Consensus 621 ~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 700 (751)
++++|.+.++++.... +.+...+..++..+...|++++|+..++++++..+. +..++..++..+...|++++|+..++
T Consensus 120 ~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~ 197 (258)
T 3uq3_A 120 NAEKELKKAEAEAYVN-PEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPE-DARGYSNRAAALAKLMSFPEAIADCN 197 (258)
T ss_dssp HHHHHHHHHHHHHHCC-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcC-cchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 4555555555555421 112344555555555555555555555555554333 45555555555555555555555555
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcC
Q 004470 701 EMRRGGLVADREIYYFFVDINFEEGNTEITLELCDAAIECY 741 (751)
Q Consensus 701 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 741 (751)
++++.. +.+...+..++.++.+.|++++|.+.++++++..
T Consensus 198 ~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~ 237 (258)
T 3uq3_A 198 KAIEKD-PNFVRAYIRKATAQIAVKEYASALETLDAARTKD 237 (258)
T ss_dssp HHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHhC-HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC
Confidence 555542 3345555555555555555555555555555443
No 39
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.66 E-value=1.2e-14 Score=139.83 Aligned_cols=200 Identities=11% Similarity=-0.030 Sum_probs=132.4
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhhHHHH
Q 004470 533 HPDTFTYTTIMDAYCKSGEMVKAHELLRDMLDKGLQPSVVTFNVLMNGFCMSGMIEDGEKLLKWMLEKGLKPNAATYNPL 612 (751)
Q Consensus 533 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~g~~p~~~~~~~l 612 (751)
+++...+..+...+.+.|++++|...|++.++.. +.+...+..+...+.+.|++++|+..+++.++... .+...+..+
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P-~~~~a~~~l 79 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKEN-PQDPEALYWLARTQLKLGLVNPALENGKTLVARTP-RYLGGYMVL 79 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CcHHHHHHH
Confidence 3445555556666666666666666666666543 34555666666666666666666666666665421 134555556
Q ss_pred HHHHHHc-----------CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 004470 613 IKQHCLR-----------NDMRTTAKIYKGMCAQGITPDGNTYNILLQGHCKARNMKEAWFLHKEMVQKGFNLTTSSYNA 681 (751)
Q Consensus 613 ~~~~~~~-----------g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ 681 (751)
...+... |++++|++.+++.++.. +.+...+..+...+...|++++|+..|+++++.+ .++..+..
T Consensus 80 g~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~ 156 (217)
T 2pl2_A 80 SEAYVALYRQAEDRERGKGYLEQALSVLKDAERVN-PRYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSA 156 (217)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHH
T ss_pred HHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHH
Confidence 6666666 88888888888888753 2257778888888899999999999999988877 58888889
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 004470 682 LIKGFLKRKKYLEARELFEEMRRGGLVADREIYYFFVDINFEEGNTEITLELCDAAI 738 (751)
Q Consensus 682 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 738 (751)
++.+|...|++++|+..|+++++.. |.+...+..++..+.+.|++++|++.++++.
T Consensus 157 la~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 157 LAELYLSMGRLDEALAQYAKALEQA-PKDLDLRVRYASALLLKGKAEEAARAAALEH 212 (217)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTC---------------
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence 9999999999999999999988864 5677888888888999999999988888764
No 40
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.64 E-value=6e-13 Score=133.15 Aligned_cols=224 Identities=12% Similarity=0.049 Sum_probs=135.9
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhCCCCCCHHHHH
Q 004470 500 NIYTYNSIVNGLCKAGNILQAVKLMEDMEVAGFHPDTFTYTTIMDAYCK----SGEMVKAHELLRDMLDKGLQPSVVTFN 575 (751)
Q Consensus 500 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~~~~p~~~~~~ 575 (751)
+..++..+...+...|++++|...|++..+ +.+...+..+...|.. .+++++|...|++..+.+ +...+.
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~---~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~ 78 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACD---LKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCH 78 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHH---CCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHH
Confidence 344445555555555555555555555555 2234445555555555 666666666666665543 455555
Q ss_pred HHHHHHHh----cCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHH----cCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 004470 576 VLMNGFCM----SGMIEDGEKLLKWMLEKGLKPNAATYNPLIKQHCL----RNDMRTTAKIYKGMCAQGITPDGNTYNIL 647 (751)
Q Consensus 576 ~li~~~~~----~g~~~~A~~l~~~~~~~g~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~~~~~l 647 (751)
.+...|.. .+++++|...+++..+.+ +...+..+...|.. .+++++|.+.|++..+.+ +...+..+
T Consensus 79 ~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l 152 (273)
T 1ouv_A 79 LLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTIL 152 (273)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHH
T ss_pred HHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHHH
Confidence 56666665 666666666666666543 45555566666666 666666666666666643 44555566
Q ss_pred HHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 004470 648 LQGHCK----ARNMKEAWFLHKEMVQKGFNLTTSSYNALIKGFLK----RKKYLEARELFEEMRRGGLVADREIYYFFVD 719 (751)
Q Consensus 648 i~~~~~----~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 719 (751)
...|.. .+++++|+..+++..+.+ ++..+..+...|.. .+++++|+..++++.+.+ +...+..++.
T Consensus 153 g~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l~~ 226 (273)
T 1ouv_A 153 GSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NGGGCFNLGA 226 (273)
T ss_dssp HHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHH
T ss_pred HHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCC---CHHHHHHHHH
Confidence 666665 667777777777666653 45566666666666 677777777777766653 2555666666
Q ss_pred HHHh----cCChhHHHHHHHHHHHcC
Q 004470 720 INFE----EGNTEITLELCDAAIECY 741 (751)
Q Consensus 720 ~~~~----~g~~~~A~~~~~~~~~~~ 741 (751)
.|.+ .|++++|+++++++++.+
T Consensus 227 ~~~~g~~~~~~~~~A~~~~~~a~~~~ 252 (273)
T 1ouv_A 227 MQYNGEGVTRNEKQAIENFKKGCKLG 252 (273)
T ss_dssp HHHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred HHHcCCCcccCHHHHHHHHHHHHHcC
Confidence 6666 677777777777776655
No 41
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.64 E-value=8.6e-15 Score=140.89 Aligned_cols=195 Identities=13% Similarity=0.041 Sum_probs=90.9
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHhCCCccCHHhHHHHHHHHHhCCCCHHHHHHHHHhchhcCCCcCHHHHHHHHHH
Q 004470 186 HVFDIFFQVLVEARKLNEARKLFEKLLNYGLVISVDSCNLFLSRLSNTCDGLRMVVKSFTEFPELGICWNTASYNIMIHC 265 (751)
Q Consensus 186 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 265 (751)
.++..++.++.+.|++++|+..|+++++. .|+.......++.++...|++++|+..|+++.+..|. +..++..+...
T Consensus 6 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg~~ 82 (217)
T 2pl2_A 6 QNPLRLGVQLYALGRYDAALTLFERALKE--NPQDPEALYWLARTQLKLGLVNPALENGKTLVARTPR-YLGGYMVLSEA 82 (217)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTT--SSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHH
Confidence 33344444444444444444444444433 2333333333333333334444444444444443322 33444444444
Q ss_pred HHhc-----------CCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHH
Q 004470 266 LCRF-----------GKIKEAHLLLLQMELRGCSPDVVSFSTIINGYCYLGELQRVLKLIEEMQIKGLKPNPYTYNSVVR 334 (751)
Q Consensus 266 ~~~~-----------g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~ 334 (751)
+.+. |++++|+..|++..+... -+...|..+...+...|++++|++.|++..+.. .+...+..+..
T Consensus 83 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~la~ 159 (217)
T 2pl2_A 83 YVALYRQAEDRERGKGYLEQALSVLKDAERVNP-RYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSALAE 159 (217)
T ss_dssp HHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHH
T ss_pred HHHhhhhhhhhcccccCHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHHHHH
Confidence 4444 666666666666555432 244555556666666666666666666665554 35555666666
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 004470 335 LLCKTSKVVEAETILREMMNQGIVPDNVIYTTLIDGFCKMGNVAAAYRLFDEM 387 (751)
Q Consensus 335 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 387 (751)
.+...|++++|...+++.++.. +.+..++..+...+.+.|++++|...|++.
T Consensus 160 ~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 211 (217)
T 2pl2_A 160 LYLSMGRLDEALAQYAKALEQA-PKDLDLRVRYASALLLKGKAEEAARAAALE 211 (217)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTC--------------
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 6666666666666666665542 234555666666666666666666666554
No 42
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.64 E-value=2e-14 Score=154.86 Aligned_cols=381 Identities=12% Similarity=0.061 Sum_probs=176.5
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCH---HHHHHHHHHHHHCCCCCCcccHHHHHHHHHh
Q 004470 262 MIHCLCRFGKIKEAHLLLLQMELRGCSPDVVSFSTIINGYCYLGEL---QRVLKLIEEMQIKGLKPNPYTYNSVVRLLCK 338 (751)
Q Consensus 262 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~---~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~ 338 (751)
+...+.+.|++++|+++|++..+.|. ...+..|...|...|+. ++|+++|++..+. ++..+..|...+..
T Consensus 9 la~~~~~~g~~~~A~~~~~~aa~~g~---~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~----~~~A~~~Lg~~~~~ 81 (452)
T 3e4b_A 9 LANEALKRGDTVTAQQNYQQLAELGY---SEAQVGLADIQVGTRDPAQIKQAEATYRAAADT----SPRAQARLGRLLAA 81 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTC---CTGGGTCC--------------------------------CHHHHHHHHHT
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHCCC---HHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC----CHHHHHHHHHHHHh
Confidence 44455556666666666666555432 22333444444445555 5555555555432 33444444443333
Q ss_pred cC-----CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHH
Q 004470 339 TS-----KVVEAETILREMMNQGIVPDNVIYTTLIDGFCKMGNVAAAYRLFDEMRGLNIIPDLLTYTAIICGFCLTGKMV 413 (751)
Q Consensus 339 ~g-----~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~ 413 (751)
.| ++++|...|++..+.|.. ..+..|...|...+..+++ .
T Consensus 82 ~~~~~~~~~~~A~~~~~~Aa~~g~~---~A~~~Lg~~y~~~~~~~~~--------------------------------~ 126 (452)
T 3e4b_A 82 KPGATEAEHHEAESLLKKAFANGEG---NTLIPLAMLYLQYPHSFPN--------------------------------V 126 (452)
T ss_dssp C--CCHHHHHHHHHHHHHHHHTTCS---SCHHHHHHHHHHCGGGCTT--------------------------------C
T ss_pred CCCCCCcCHHHHHHHHHHHHHCCCH---HHHHHHHHHHHhCCCCCCC--------------------------------H
Confidence 33 445555555555554421 1344444444443322221 1
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC---CHHHHHHHHH
Q 004470 414 EAEKLFHEMLGRGLEPDEIVYTALIDGYCKAGGMKKAFSLHNNMVHMRLTPNVVTYTALADGLCKSG---ELETANELLH 490 (751)
Q Consensus 414 ~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g---~~~~A~~l~~ 490 (751)
++.+.+......| +......|...|...+.++++........+.-...++..+..|...|...| +.++|++.|+
T Consensus 127 ~a~~~~~~a~~~g---~~~a~~~Lg~~y~~~~~~~~~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~ 203 (452)
T 3e4b_A 127 NAQQQISQWQAAG---YPEAGLAQVLLYRTQGTYDQHLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQME 203 (452)
T ss_dssp CHHHHHHHHHHHT---CTTHHHHHHHHHHHHTCGGGGHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHH
Confidence 2233333333222 122333444445444433333332222111111112225555666666666 5666666666
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHHc----CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH-H--HHcCCHHHHHHHHHHHH
Q 004470 491 EMCRKGLQLNIYTYNSIVNGLCKA----GNILQAVKLMEDMEVAGFHPDTFTYTTIMDA-Y--CKSGEMVKAHELLRDML 563 (751)
Q Consensus 491 ~m~~~g~~~~~~~~~~li~~~~~~----g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~-~--~~~g~~~~A~~~~~~~~ 563 (751)
+..+.|.. +...+..+...|... ++.++|+..|++.. . -+...+..+... + ...+++++|.+.|++..
T Consensus 204 ~aa~~g~~-~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa-~---g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa 278 (452)
T 3e4b_A 204 AGVSRGTV-TAQRVDSVARVLGDATLGTPDEKTAQALLEKIA-P---GYPASWVSLAQLLYDFPELGDVEQMMKYLDNGR 278 (452)
T ss_dssp HHHHTTCS-CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG-G---GSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHH
T ss_pred HHHHCCCH-HHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc-C---CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Confidence 66665533 444444444444333 46666666666655 2 233444444444 2 34566677777777666
Q ss_pred hCCCCCCHHHHHHHHHHHHhcC-----ChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHH----cCCHHHHHHHHHHHHH
Q 004470 564 DKGLQPSVVTFNVLMNGFCMSG-----MIEDGEKLLKWMLEKGLKPNAATYNPLIKQHCL----RNDMRTTAKIYKGMCA 634 (751)
Q Consensus 564 ~~~~~p~~~~~~~li~~~~~~g-----~~~~A~~l~~~~~~~g~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~m~~ 634 (751)
+.| +...+..|...|. .| +.++|...|++.. . -+...+..|...|.. ..+.++|.++|++..+
T Consensus 279 ~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa-~---g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~ 350 (452)
T 3e4b_A 279 AAD---QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV-G---REVAADYYLGQIYRRGYLGKVYPQKALDHLLTAAR 350 (452)
T ss_dssp HTT---CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT-T---TCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHT
T ss_pred HCC---CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh-C---CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHh
Confidence 655 5555666666555 34 6677777766665 2 244555555555543 3377777777777776
Q ss_pred CCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004470 635 QGITPDGNTYNILLQGHCK----ARNMKEAWFLHKEMVQKGFNLTTSSYNALIKGFLKRKKYLEARELFEEMRR 704 (751)
Q Consensus 635 ~g~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 704 (751)
.|. ......|...|.. ..+.++|...|+...+.|.. +.......+......++.++|..+.++..+
T Consensus 351 ~g~---~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g~~-~a~~~l~~l~~~~~~~~~~~a~~~~~~~~~ 420 (452)
T 3e4b_A 351 NGQ---NSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQDTP-EANDLATQLEAPLTPAQRAEGQRLVQQELA 420 (452)
T ss_dssp TTC---TTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTTCCH-HHHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred hCh---HHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHCCCH-HHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 552 2334455555543 34777777777777776632 222222222222233455666666666554
No 43
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.64 E-value=3.9e-14 Score=140.11 Aligned_cols=225 Identities=12% Similarity=0.058 Sum_probs=157.9
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC--CC----HHHH
Q 004470 431 EIVYTALIDGYCKAGGMKKAFSLHNNMVHMRLTPNVVTYTALADGLCKSGELETANELLHEMCRKGLQ--LN----IYTY 504 (751)
Q Consensus 431 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~--~~----~~~~ 504 (751)
...+..+...+...|++++|...++++.+.. .+..++..+...+...|++++|.+.++++.+.... ++ ...+
T Consensus 5 a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 82 (258)
T 3uq3_A 5 ADKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSF 82 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHH
Confidence 4678889999999999999999999999887 68899999999999999999999999998875322 12 5788
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 004470 505 NSIVNGLCKAGNILQAVKLMEDMEVAGFHPDTFTYTTIMDAYCKSGEMVKAHELLRDMLDKGLQPSVVTFNVLMNGFCMS 584 (751)
Q Consensus 505 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~ 584 (751)
..+...+...|++++|...++++... .|+. ..+.+.|++++|...++++.... +.+...+..+...+...
T Consensus 83 ~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~-------~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 152 (258)
T 3uq3_A 83 ARIGNAYHKLGDLKKTIEYYQKSLTE--HRTA-------DILTKLRNAEKELKKAEAEAYVN-PEKAEEARLEGKEYFTK 152 (258)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH--CCCH-------HHHHHHHHHHHHHHHHHHHHHCC-HHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhc--Cchh-------HHHHHHhHHHHHHHHHHHHHHcC-cchHHHHHHHHHHHHHh
Confidence 99999999999999999999999886 4663 34667788899999999888753 33455666666666677
Q ss_pred CChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 004470 585 GMIEDGEKLLKWMLEKGLKPNAATYNPLIKQHCLRNDMRTTAKIYKGMCAQGITPDGNTYNILLQGHCKARNMKEAWFLH 664 (751)
Q Consensus 585 g~~~~A~~l~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~ 664 (751)
|++++|...++++.+... .+..++..+...+...|++++|.+.++++++.. +.+...+..+...+.+.|++++|...+
T Consensus 153 ~~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~ 230 (258)
T 3uq3_A 153 SDWPNAVKAYTEMIKRAP-EDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQIAVKEYASALETL 230 (258)
T ss_dssp TCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cCHHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-HHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 777777777766665421 134444444445555555555555555544432 122344444444444444444444444
Q ss_pred HHHHH
Q 004470 665 KEMVQ 669 (751)
Q Consensus 665 ~~~~~ 669 (751)
+++++
T Consensus 231 ~~a~~ 235 (258)
T 3uq3_A 231 DAART 235 (258)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 44443
No 44
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.61 E-value=5.3e-14 Score=146.76 Aligned_cols=251 Identities=11% Similarity=0.018 Sum_probs=183.5
Q ss_pred CCChhHHHHHHHHHHhcCChHHHHHHHHHHHcCCCCCchhhhHHHHHHHHHhhhcCCCChhhHHHHHHHHHhcCC-hhHH
Q 004470 126 EPILEARCIVVQISVAAKDLKTAHGLIHDFWAKPNLDASIAFTHFVERLIYTYKDWGSDPHVFDIFFQVLVEARK-LNEA 204 (751)
Q Consensus 126 ~~~~~~~~~~~~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~A 204 (751)
|.+..++..++.++...|++++|...+++++..+ |.++.+|..++.+|...|+ +++|
T Consensus 94 p~~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~----------------------P~~~~a~~~~g~~l~~~g~d~~eA 151 (382)
T 2h6f_A 94 DKFRDVYDYFRAVLQRDERSERAFKLTRDAIELN----------------------AANYTVWHFRRVLLKSLQKDLHEE 151 (382)
T ss_dssp HHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHC----------------------TTCHHHHHHHHHHHHHTTCCHHHH
T ss_pred hhhHHHHHHHHHHHHHCCChHHHHHHHHHHHHhC----------------------ccCHHHHHHHHHHHHHcccCHHHH
Confidence 3445677778888888888999998888888765 6777888888888888886 9999
Q ss_pred HHHHHHHHhCCCccCHHhHHHHHHHHHhCCCCHHHHHHHHHhchhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 004470 205 RKLFEKLLNYGLVISVDSCNLFLSRLSNTCDGLRMVVKSFTEFPELGICWNTASYNIMIHCLCRFGKIKEAHLLLLQMEL 284 (751)
Q Consensus 205 ~~~~~~~~~~g~~p~~~~~~~ll~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 284 (751)
+..|+++++. .|+....-..++.++...|++++|+..|+++++..+. +..+|..+..++.+.|++++|+..|+++.+
T Consensus 152 l~~~~~al~l--~P~~~~a~~~~g~~~~~~g~~~eAl~~~~kal~ldP~-~~~a~~~lg~~~~~~g~~~eAl~~~~~al~ 228 (382)
T 2h6f_A 152 MNYITAIIEE--QPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAK-NYHAWQHRQWVIQEFKLWDNELQYVDQLLK 228 (382)
T ss_dssp HHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCCTTHHHHHHHHHH
T ss_pred HHHHHHHHHH--CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcc-CHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 9999988887 5666555555555555678888888888888888766 788888888888888888888888888887
Q ss_pred cCCCCCHHHHHHHHHHHHh-cCCHHHH-----HHHHHHHHHCCCCCCcccHHHHHHHHHhcC--CHHHHHHHHHHHHHCC
Q 004470 285 RGCSPDVVSFSTIINGYCY-LGELQRV-----LKLIEEMQIKGLKPNPYTYNSVVRLLCKTS--KVVEAETILREMMNQG 356 (751)
Q Consensus 285 ~g~~p~~~~~~~li~~~~~-~g~~~~A-----~~~~~~m~~~g~~p~~~~~~~li~~~~~~g--~~~~A~~~~~~m~~~g 356 (751)
... -+...|+.+...+.+ .|..++| ++.+++..+.. +-+...|+.+...+...| ++++|.+.+.++ +.
T Consensus 229 l~P-~~~~a~~~lg~~l~~l~~~~~eA~~~~el~~~~~Al~l~-P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~- 304 (382)
T 2h6f_A 229 EDV-RNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLV-PHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QP- 304 (382)
T ss_dssp HCT-TCHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TT-
T ss_pred hCC-CCHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHccCccchHHHHHHHHHh-cc-
Confidence 654 467788888888888 5555776 47777777653 225667777777777777 577888877777 33
Q ss_pred CCCCHHHHHHHHHHHHHcC---------CHHHHHHHHHHH-HhCCCCCCHHHHHHHHHHH
Q 004470 357 IVPDNVIYTTLIDGFCKMG---------NVAAAYRLFDEM-RGLNIIPDLLTYTAIICGF 406 (751)
Q Consensus 357 ~~p~~~~~~~li~~~~~~g---------~~~~A~~~~~~m-~~~~~~p~~~~~~~li~~~ 406 (751)
.+.+...+..+...|.+.| ..++|.++|+++ .+.++. ....|..+...+
T Consensus 305 ~p~~~~al~~La~~~~~~~~~~~~~~~~~~~~A~~~~~~l~~~~DP~-r~~~w~~~~~~l 363 (382)
T 2h6f_A 305 SHSSPYLIAFLVDIYEDMLENQCDNKEDILNKALELCEILAKEKDTI-RKEYWRYIGRSL 363 (382)
T ss_dssp TCCCHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHTTCGG-GHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHhCch-hHHHHHHHHHHH
Confidence 2445667777777777764 247788888877 554321 344455554443
No 45
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.60 E-value=2.2e-12 Score=129.05 Aligned_cols=224 Identities=12% Similarity=0.016 Sum_probs=162.2
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 004470 465 NVVTYTALADGLCKSGELETANELLHEMCRKGLQLNIYTYNSIVNGLCK----AGNILQAVKLMEDMEVAGFHPDTFTYT 540 (751)
Q Consensus 465 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~ 540 (751)
+..++..+...+...|++++|.+.|++..+. -+...+..+...+.. .+++++|...|++..+.+ +...+.
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~---~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~ 78 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDL---KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCH 78 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHH
Confidence 4555666666677777777777777776663 244566666666776 777777777777776654 566666
Q ss_pred HHHHHHHH----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCChhHHHHHHHHHHHcCCCCCHhhHHHH
Q 004470 541 TIMDAYCK----SGEMVKAHELLRDMLDKGLQPSVVTFNVLMNGFCM----SGMIEDGEKLLKWMLEKGLKPNAATYNPL 612 (751)
Q Consensus 541 ~li~~~~~----~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~l~~~~~~~g~~p~~~~~~~l 612 (751)
.+...|.. .+++++|...|++..+.+ +...+..+...|.. .+++++|...+++..+.+ +...+..+
T Consensus 79 ~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l 152 (273)
T 1ouv_A 79 LLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTIL 152 (273)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHH
T ss_pred HHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHHH
Confidence 67777777 777777777777777654 66677777777777 777777877777777754 45566667
Q ss_pred HHHHHH----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 004470 613 IKQHCL----RNDMRTTAKIYKGMCAQGITPDGNTYNILLQGHCK----ARNMKEAWFLHKEMVQKGFNLTTSSYNALIK 684 (751)
Q Consensus 613 ~~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~ 684 (751)
...|.. .+++++|.+.+++..+.+ +...+..+...|.. .+++++|+..++++.+.+ +...+..+..
T Consensus 153 g~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l~~ 226 (273)
T 1ouv_A 153 GSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NGGGCFNLGA 226 (273)
T ss_dssp HHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHH
T ss_pred HHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCC---CHHHHHHHHH
Confidence 777766 778888888888887753 45667777788888 888888888888888764 3667777888
Q ss_pred HHHh----cCCHHHHHHHHHHHHHCC
Q 004470 685 GFLK----RKKYLEARELFEEMRRGG 706 (751)
Q Consensus 685 ~~~~----~g~~~~A~~~~~~~~~~~ 706 (751)
.|.+ .+++++|.+.++++.+.|
T Consensus 227 ~~~~g~~~~~~~~~A~~~~~~a~~~~ 252 (273)
T 1ouv_A 227 MQYNGEGVTRNEKQAIENFKKGCKLG 252 (273)
T ss_dssp HHHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred HHHcCCCcccCHHHHHHHHHHHHHcC
Confidence 8887 888888888888888765
No 46
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.59 E-value=1.4e-13 Score=137.56 Aligned_cols=247 Identities=9% Similarity=0.011 Sum_probs=144.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHH
Q 004470 467 VTYTALADGLCKSGELETANELLHEMCRKGLQLNIYTYNSIVNGLCKAGNILQAVKLMEDMEVAGFHPD--TFTYTTIMD 544 (751)
Q Consensus 467 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~li~ 544 (751)
..+......+...|++++|...++++.+.... +...+..+..++...|++++|+..++++.+....++ ...|..+..
T Consensus 4 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~ 82 (272)
T 3u4t_A 4 DVEFRYADFLFKNNNYAEAIEVFNKLEAKKYN-SPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGK 82 (272)
T ss_dssp -CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCC-CSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHH
Confidence 34555666667777777777777777665332 444566666677777777777777777666321111 234666666
Q ss_pred HHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHHcCCHHH
Q 004470 545 AYCKSGEMVKAHELLRDMLDKGLQPSVVTFNVLMNGFCMSGMIEDGEKLLKWMLEKGLKPNAATYNPLIKQHCLRNDMRT 624 (751)
Q Consensus 545 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~ 624 (751)
.+...|++++|.+.+++..+.. +.+..++..+...|...|++++|...+++..+.. +.+...+..+...+...+++++
T Consensus 83 ~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~ 160 (272)
T 3u4t_A 83 ILMKKGQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPT-TTDPKVFYELGQAYYYNKEYVK 160 (272)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSS-CCCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHcccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcC-CCcHHHHHHHHHHHHHHHHHHH
Confidence 6777777777777777766543 3355666666666667777777777666666542 2234445555523334456666
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHHCC-CCCC------HHHHHHHHHHHHhcCCHHH
Q 004470 625 TAKIYKGMCAQGITPDGNTYNILLQGHCKARN---MKEAWFLHKEMVQKG-FNLT------TSSYNALIKGFLKRKKYLE 694 (751)
Q Consensus 625 A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~---~~~A~~~~~~~~~~~-~~p~------~~~~~~l~~~~~~~g~~~~ 694 (751)
|.+.++++++.. +.+...+..+...+...|+ +++|...++++++.. ..|+ ..+|..++..|.+.|++++
T Consensus 161 A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 239 (272)
T 3u4t_A 161 ADSSFVKVLELK-PNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVK 239 (272)
T ss_dssp HHHHHHHHHHHS-TTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHhC-ccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHH
Confidence 666666666632 2235555556666666666 666666666666531 1112 1355556666666666666
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHH
Q 004470 695 ARELFEEMRRGGLVADREIYYFFV 718 (751)
Q Consensus 695 A~~~~~~~~~~~~~~~~~~~~~l~ 718 (751)
|.+.++++++.. |.+...+..+.
T Consensus 240 A~~~~~~al~~~-p~~~~a~~~l~ 262 (272)
T 3u4t_A 240 ADAAWKNILALD-PTNKKAIDGLK 262 (272)
T ss_dssp HHHHHHHHHHHC-TTCHHHHHHHC
T ss_pred HHHHHHHHHhcC-ccHHHHHHHhh
Confidence 666666666643 33444444433
No 47
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.58 E-value=5.3e-13 Score=131.61 Aligned_cols=199 Identities=13% Similarity=0.087 Sum_probs=94.0
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHH
Q 004470 539 YTTIMDAYCKSGEMVKAHELLRDMLDKGLQPSVVTFNVLMNGFCMSGMIEDGEKLLKWMLEKGLKPNAATYNPLIKQHCL 618 (751)
Q Consensus 539 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~g~~p~~~~~~~l~~~~~~ 618 (751)
+..+...+...|++++|.+.++++.+.. +.+...+..+...+...|++++|.+.++++.+... .+...+..+...|..
T Consensus 40 ~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~la~~~~~ 117 (252)
T 2ho1_A 40 YIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASDS-RNARVLNNYGGFLYE 117 (252)
T ss_dssp HHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc-CcHHHHHHHHHHHHH
Confidence 3344444444444444444444444332 22344444444444444444444444444444321 133444444444455
Q ss_pred cCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 004470 619 RNDMRTTAKIYKGMCAQGITP-DGNTYNILLQGHCKARNMKEAWFLHKEMVQKGFNLTTSSYNALIKGFLKRKKYLEARE 697 (751)
Q Consensus 619 ~g~~~~A~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~ 697 (751)
.|++++|.+.++++.+.+..| +...+..++..+...|++++|...++++.+..+. +...+..++..+...|++++|..
T Consensus 118 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~g~~~~A~~ 196 (252)
T 2ho1_A 118 QKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRN-QPSVALEMADLLYKEREYVPARQ 196 (252)
T ss_dssp TTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHcCCHHHHHH
Confidence 555555555555544421222 2334444555555555555555555555544322 34455555555555555555555
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcC
Q 004470 698 LFEEMRRGGLVADREIYYFFVDINFEEGNTEITLELCDAAIECY 741 (751)
Q Consensus 698 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 741 (751)
.++++.+.. +.+...+..++..+.+.|+.++|.++++++++..
T Consensus 197 ~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~ 239 (252)
T 2ho1_A 197 YYDLFAQGG-GQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLY 239 (252)
T ss_dssp HHHHHHTTS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHhC-cCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC
Confidence 555555432 3344445555555555555555555555555443
No 48
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.58 E-value=2.5e-13 Score=135.70 Aligned_cols=236 Identities=9% Similarity=0.002 Sum_probs=129.7
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHcCCCCCchhhhHHHHHHHHHhhhcCCCChhhHHHHHHHHHhcCChhHHHHHHH
Q 004470 130 EARCIVVQISVAAKDLKTAHGLIHDFWAKPNLDASIAFTHFVERLIYTYKDWGSDPHVFDIFFQVLVEARKLNEARKLFE 209 (751)
Q Consensus 130 ~~~~~~~~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 209 (751)
+.....+..+...|++++|...+++++... |.++.++..++.+|...|++++|++.|+
T Consensus 4 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~----------------------p~~~~~~~~l~~~~~~~~~~~~A~~~~~ 61 (272)
T 3u4t_A 4 DVEFRYADFLFKNNNYAEAIEVFNKLEAKK----------------------YNSPYIYNRRAVCYYELAKYDLAQKDIE 61 (272)
T ss_dssp -CHHHHHHHHHTTTCHHHHHHHHHHHHHTT----------------------CCCSTTHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC----------------------CCcHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 345566667777777777777777776654 4555667777777777777777777777
Q ss_pred HHHhCCCccCH-HhHHHHHHHHHhCCCCHHHHHHHHHhchhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 004470 210 KLLNYGLVISV-DSCNLFLSRLSNTCDGLRMVVKSFTEFPELGICWNTASYNIMIHCLCRFGKIKEAHLLLLQMELRGCS 288 (751)
Q Consensus 210 ~~~~~g~~p~~-~~~~~ll~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 288 (751)
++++.+..|+. ......++.++...|++++|.+.|+++.+..+. +..++..+...|.+.|++++|+..|++..+.. +
T Consensus 62 ~a~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~ 139 (272)
T 3u4t_A 62 TYFSKVNATKAKSADFEYYGKILMKKGQDSLAIQQYQAAVDRDTT-RLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPT-T 139 (272)
T ss_dssp HHHTTSCTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSS-C
T ss_pred HHHhccCchhHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHccCHHHHHHHHHHHhhcC-C
Confidence 77764322222 111223333444556666666666666665443 45566666666666666666666666655442 1
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCC---HHHHHHHHHHHHHCC-CCCC----
Q 004470 289 PDVVSFSTIINGYCYLGELQRVLKLIEEMQIKGLKPNPYTYNSVVRLLCKTSK---VVEAETILREMMNQG-IVPD---- 360 (751)
Q Consensus 289 p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~---~~~A~~~~~~m~~~g-~~p~---- 360 (751)
.+...|..+...+...+++++|.+.++++.+.. +.+...+..+...+...|+ +++|...+++..+.. -.|+
T Consensus 140 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~ 218 (272)
T 3u4t_A 140 TDPKVFYELGQAYYYNKEYVKADSSFVKVLELK-PNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKD 218 (272)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHH
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchH
Confidence 344455555423333446666666666665542 1234445555555555555 555555555544321 0112
Q ss_pred --HHHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Q 004470 361 --NVIYTTLIDGFCKMGNVAAAYRLFDEMRGL 390 (751)
Q Consensus 361 --~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 390 (751)
..+|..+...|.+.|++++|.+.|++..+.
T Consensus 219 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~ 250 (272)
T 3u4t_A 219 ELIEANEYIAYYYTINRDKVKADAAWKNILAL 250 (272)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 134444555555555555555555555544
No 49
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.58 E-value=3.6e-13 Score=140.48 Aligned_cols=250 Identities=9% Similarity=-0.001 Sum_probs=176.1
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 004470 466 VVTYTALADGLCKSGELETANELLHEMCRKGLQLNIYTYNSIVNGLCKAGN-ILQAVKLMEDMEVAGFHPDTFTYTTIMD 544 (751)
Q Consensus 466 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~~~~li~~~~~~g~-~~~A~~~~~~~~~~~~~~~~~~~~~li~ 544 (751)
...|..+...+.+.|++++|++.++++++.... +...|+.+..++...|+ +++|+..++++.+.. +.+...|..+..
T Consensus 97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~-~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~-P~~~~a~~~~g~ 174 (382)
T 2h6f_A 97 RDVYDYFRAVLQRDERSERAFKLTRDAIELNAA-NYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRRV 174 (382)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHhCcc-CHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC-CCCHHHHHHHHH
Confidence 345666677777777777777777777776433 56677777777777775 777777777777765 556777777777
Q ss_pred HHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHH-cCCHH
Q 004470 545 AYCKSGEMVKAHELLRDMLDKGLQPSVVTFNVLMNGFCMSGMIEDGEKLLKWMLEKGLKPNAATYNPLIKQHCL-RNDMR 623 (751)
Q Consensus 545 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~g~~p~~~~~~~l~~~~~~-~g~~~ 623 (751)
++...|++++|+..|+++++.. +.+...|..+..++...|++++|+..++++++.... +...|+.+...+.. .|..+
T Consensus 175 ~~~~~g~~~eAl~~~~kal~ld-P~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~-~~~a~~~lg~~l~~l~~~~~ 252 (382)
T 2h6f_A 175 LVEWLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVR-NNSVWNQRYFVISNTTGYND 252 (382)
T ss_dssp HHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCSCS
T ss_pred HHHHccCHHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCcch
Confidence 7777788888888887777664 446777777777777778888888888887776432 56677777777777 45545
Q ss_pred HH-----HHHHHHHHHCCCCCCHHHHHHHHHHHHhcC--CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC------
Q 004470 624 TT-----AKIYKGMCAQGITPDGNTYNILLQGHCKAR--NMKEAWFLHKEMVQKGFNLTTSSYNALIKGFLKRK------ 690 (751)
Q Consensus 624 ~A-----~~~~~~m~~~g~~p~~~~~~~li~~~~~~g--~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g------ 690 (751)
+| ++.+++.++.. +-+...|..+...+.+.| ++++|++.+.++ +..+ .+...+..++++|.+.|
T Consensus 253 eA~~~~el~~~~~Al~l~-P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~p-~~~~al~~La~~~~~~~~~~~~~ 329 (382)
T 2h6f_A 253 RAVLEREVQYTLEMIKLV-PHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPSH-SSPYLIAFLVDIYEDMLENQCDN 329 (382)
T ss_dssp HHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTTC-CCHHHHHHHHHHHHHHHHTTCSS
T ss_pred HHHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHccCccchHHHHHHHHHh-ccCC-CCHHHHHHHHHHHHHHhcccccc
Confidence 66 47777777743 225667888888888777 588888888887 4433 36778888888888764
Q ss_pred ---CHHHHHHHHHHH-HHCCCCCCHHHHHHHHHHHHh
Q 004470 691 ---KYLEARELFEEM-RRGGLVADREIYYFFVDINFE 723 (751)
Q Consensus 691 ---~~~~A~~~~~~~-~~~~~~~~~~~~~~l~~~~~~ 723 (751)
.+++|+++++++ .+.+ +.....|..++..+..
T Consensus 330 ~~~~~~~A~~~~~~l~~~~D-P~r~~~w~~~~~~l~~ 365 (382)
T 2h6f_A 330 KEDILNKALELCEILAKEKD-TIRKEYWRYIGRSLQS 365 (382)
T ss_dssp HHHHHHHHHHHHHHHHHTTC-GGGHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHhC-chhHHHHHHHHHHHHH
Confidence 258888888888 6643 3345666666655543
No 50
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.57 E-value=9e-14 Score=139.10 Aligned_cols=246 Identities=9% Similarity=-0.080 Sum_probs=155.1
Q ss_pred cCCHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHH
Q 004470 479 SGELETANELLHEMCRKGL---QLNIYTYNSIVNGLCKAGNILQAVKLMEDMEVAGFHPDTFTYTTIMDAYCKSGEMVKA 555 (751)
Q Consensus 479 ~g~~~~A~~l~~~m~~~g~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 555 (751)
.|++++|++.++++.+... +.+...+..+...+...|++++|...++++.+.. +.+..++..+...|...|++++|
T Consensus 18 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A 96 (275)
T 1xnf_A 18 TLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAA 96 (275)
T ss_dssp CHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHH
T ss_pred cchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHHHH
Confidence 4556667777766665422 1134456666666777777777777777766654 44566677777777777777777
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 004470 556 HELLRDMLDKGLQPSVVTFNVLMNGFCMSGMIEDGEKLLKWMLEKGLKPNAATYNPLIKQHCLRNDMRTTAKIYKGMCAQ 635 (751)
Q Consensus 556 ~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 635 (751)
.+.++++.+.. +.+..++..+...|...|++++|...++++.+. .|+.......+..+...|++++|...+++....
T Consensus 97 ~~~~~~al~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 173 (275)
T 1xnf_A 97 YEAFDSVLELD-PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD--DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEK 173 (275)
T ss_dssp HHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcC-ccccHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 77777776653 335666777777777777777777777777764 334333334444445667777777777766664
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH
Q 004470 636 GITPDGNTYNILLQGHCKARNMKEAWFLHKEMVQKGFNL---TTSSYNALIKGFLKRKKYLEARELFEEMRRGGLVADRE 712 (751)
Q Consensus 636 g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 712 (751)
. +++...+ .++..+...++.++|+..++++.+..+.. +...+..++..|.+.|++++|...++++++.. +.+..
T Consensus 174 ~-~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~ 250 (275)
T 1xnf_A 174 S-DKEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANN-VHNFV 250 (275)
T ss_dssp S-CCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-CTTCH
T ss_pred C-CcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC-chhHH
Confidence 2 2333333 35566667777777877777776543211 14677788888888888888888888888753 22322
Q ss_pred HHHHHHHHHHhcCChhHHHHHH
Q 004470 713 IYYFFVDINFEEGNTEITLELC 734 (751)
Q Consensus 713 ~~~~l~~~~~~~g~~~~A~~~~ 734 (751)
....++...|++++|++-+
T Consensus 251 ---~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 251 ---EHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp ---HHHHHHHHHHHHHHC----
T ss_pred ---HHHHHHHHHHHHHhhHHHH
Confidence 2345667778888877665
No 51
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.57 E-value=1.2e-12 Score=129.08 Aligned_cols=199 Identities=13% Similarity=-0.017 Sum_probs=113.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 004470 503 TYNSIVNGLCKAGNILQAVKLMEDMEVAGFHPDTFTYTTIMDAYCKSGEMVKAHELLRDMLDKGLQPSVVTFNVLMNGFC 582 (751)
Q Consensus 503 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~ 582 (751)
.+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|.+.++++.+.. +.+...+..+...+.
T Consensus 39 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~ 116 (252)
T 2ho1_A 39 AYIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGFLY 116 (252)
T ss_dssp HHHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHH
Confidence 33444444444555555555555444432 3344455555555555555555555555554432 234455555555555
Q ss_pred hcCChhHHHHHHHHHHHcCCCC-CHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 004470 583 MSGMIEDGEKLLKWMLEKGLKP-NAATYNPLIKQHCLRNDMRTTAKIYKGMCAQGITPDGNTYNILLQGHCKARNMKEAW 661 (751)
Q Consensus 583 ~~g~~~~A~~l~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~ 661 (751)
..|++++|.+.++++.+.+..| +...+..+...+...|++++|.+.++++.+.. +.+...+..++..+...|++++|.
T Consensus 117 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~ 195 (252)
T 2ho1_A 117 EQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLN-RNQPSVALEMADLLYKEREYVPAR 195 (252)
T ss_dssp HTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCCHHHHH
Confidence 5566666666555555422223 33445555566666666666666666666542 224566666777777777777777
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 004470 662 FLHKEMVQKGFNLTTSSYNALIKGFLKRKKYLEARELFEEMRRG 705 (751)
Q Consensus 662 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 705 (751)
..++++.+..+. +...+..++..+...|++++|.+.++++.+.
T Consensus 196 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~ 238 (252)
T 2ho1_A 196 QYYDLFAQGGGQ-NARSLLLGIRLAKVFEDRDTAASYGLQLKRL 238 (252)
T ss_dssp HHHHHHHTTSCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCcC-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 777777665433 5666667777777777777777777777664
No 52
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.56 E-value=1.5e-12 Score=125.53 Aligned_cols=201 Identities=12% Similarity=-0.016 Sum_probs=108.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 004470 501 IYTYNSIVNGLCKAGNILQAVKLMEDMEVAGFHPDTFTYTTIMDAYCKSGEMVKAHELLRDMLDKGLQPSVVTFNVLMNG 580 (751)
Q Consensus 501 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~ 580 (751)
...+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|.+.++++.+.. +.+..++..+...
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~ 85 (225)
T 2vq2_A 8 SNIKTQLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGWF 85 (225)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHHH
Confidence 4455555566666666666666666655543 3445555556666666666666666666655542 3345555555555
Q ss_pred HHhc-CChhHHHHHHHHHHHcCCCCC-HhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH
Q 004470 581 FCMS-GMIEDGEKLLKWMLEKGLKPN-AATYNPLIKQHCLRNDMRTTAKIYKGMCAQGITPDGNTYNILLQGHCKARNMK 658 (751)
Q Consensus 581 ~~~~-g~~~~A~~l~~~~~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~ 658 (751)
+... |++++|...++++.+.+..|+ ...+..+...+...|++++|.+.++++.+.. +.+...+..++..+.+.|+++
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~ 164 (225)
T 2vq2_A 86 LCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQ-PQFPPAFKELARTKMLAGQLG 164 (225)
T ss_dssp HHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCchHHHHHHHHHHHcCCHH
Confidence 5566 666666666665555212222 3444555555555555555555555555432 123445555555555555555
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004470 659 EAWFLHKEMVQKGFNLTTSSYNALIKGFLKRKKYLEARELFEEMRR 704 (751)
Q Consensus 659 ~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 704 (751)
+|...++++.+..+..+...+..+...+...|+.++|..+++.+.+
T Consensus 165 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 210 (225)
T 2vq2_A 165 DADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQA 210 (225)
T ss_dssp HHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 5555555555543312444455555555555555555555555544
No 53
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.56 E-value=3e-13 Score=132.48 Aligned_cols=201 Identities=9% Similarity=0.072 Sum_probs=108.7
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 004470 500 NIYTYNSIVNGLCKAGNILQAVKLMEDMEVAGFHPDTFTYTTIMDAYCKSGEMVKAHELLRDMLDKGLQPSVVTFNVLMN 579 (751)
Q Consensus 500 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~ 579 (751)
....|..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|.+.++++.+.. +.+...+..+..
T Consensus 22 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~ 99 (243)
T 2q7f_A 22 ASMTGGQQMGRGSEFGDYEKAAEAFTKAIEEN-KEDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAGN 99 (243)
T ss_dssp --------------------CCTTHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHHH
Confidence 33455555666666666666666666666543 4456666666666666666666666666666543 335556666666
Q ss_pred HHHhcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 004470 580 GFCMSGMIEDGEKLLKWMLEKGLKPNAATYNPLIKQHCLRNDMRTTAKIYKGMCAQGITPDGNTYNILLQGHCKARNMKE 659 (751)
Q Consensus 580 ~~~~~g~~~~A~~l~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~ 659 (751)
.+...|++++|.+.++++.+.. +.+...+..+...+...|++++|.+.++++.+.. +.+...+..++..+.+.|++++
T Consensus 100 ~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~ 177 (243)
T 2q7f_A 100 VYVVKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLALPYLQRAVELN-ENDTEARFQFGMCLANEGMLDE 177 (243)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCHH
T ss_pred HHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHcCCHHH
Confidence 6666666666666666666543 2244555556666666666666666666665532 2245555566666666666666
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 004470 660 AWFLHKEMVQKGFNLTTSSYNALIKGFLKRKKYLEARELFEEMRRG 705 (751)
Q Consensus 660 A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 705 (751)
|+..++++.+..+. +..++..++.+|.+.|++++|...++++++.
T Consensus 178 A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 222 (243)
T 2q7f_A 178 ALSQFAAVTEQDPG-HADAFYNAGVTYAYKENREKALEMLDKAIDI 222 (243)
T ss_dssp HHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCcc-cHHHHHHHHHHHHHccCHHHHHHHHHHHHcc
Confidence 66666666655332 4556666666666666666666666666654
No 54
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.56 E-value=2.8e-13 Score=132.69 Aligned_cols=201 Identities=16% Similarity=0.131 Sum_probs=98.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHH
Q 004470 536 TFTYTTIMDAYCKSGEMVKAHELLRDMLDKGLQPSVVTFNVLMNGFCMSGMIEDGEKLLKWMLEKGLKPNAATYNPLIKQ 615 (751)
Q Consensus 536 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~g~~p~~~~~~~l~~~ 615 (751)
...|..+...+...|++++|...|+++.+.. +.+...+..+...+...|++++|...++++.+.. +.+...+..+...
T Consensus 23 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~ 100 (243)
T 2q7f_A 23 SMTGGQQMGRGSEFGDYEKAAEAFTKAIEEN-KEDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAGNV 100 (243)
T ss_dssp -------------------CCTTHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHHHH
Confidence 3444455555555555555555555555432 3345555555555555556666655555555542 1244455555555
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 004470 616 HCLRNDMRTTAKIYKGMCAQGITPDGNTYNILLQGHCKARNMKEAWFLHKEMVQKGFNLTTSSYNALIKGFLKRKKYLEA 695 (751)
Q Consensus 616 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A 695 (751)
+...|++++|.+.++++.+.. +.+...+..++..+.+.|++++|...++++.+..+. +...+..++..+.+.|++++|
T Consensus 101 ~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A 178 (243)
T 2q7f_A 101 YVVKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNEN-DTEARFQFGMCLANEGMLDEA 178 (243)
T ss_dssp HHHTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCCHHH
T ss_pred HHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHcCCHHHH
Confidence 555556666665555555532 224455555555555555666666555555554332 455555555555555556666
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcC
Q 004470 696 RELFEEMRRGGLVADREIYYFFVDINFEEGNTEITLELCDAAIECY 741 (751)
Q Consensus 696 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 741 (751)
+..++++.+.. +.+...+..++.++.+.|++++|.+.++++++..
T Consensus 179 ~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 223 (243)
T 2q7f_A 179 LSQFAAVTEQD-PGHADAFYNAGVTYAYKENREKALEMLDKAIDIQ 223 (243)
T ss_dssp HHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHC
T ss_pred HHHHHHHHHhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHccC
Confidence 65555555542 3345555555555555566666665555555543
No 55
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.55 E-value=3.3e-12 Score=123.19 Aligned_cols=203 Identities=12% Similarity=0.026 Sum_probs=126.5
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhhHHHHHH
Q 004470 535 DTFTYTTIMDAYCKSGEMVKAHELLRDMLDKGLQPSVVTFNVLMNGFCMSGMIEDGEKLLKWMLEKGLKPNAATYNPLIK 614 (751)
Q Consensus 535 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~g~~p~~~~~~~l~~ 614 (751)
+...+..+...+...|++++|.+.++++.+.. +.+...+..+...+...|++++|.+.++++.+.. +.+..++..+..
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~ 84 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGW 84 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHH
Confidence 34555666666666677777777666666543 3355666666666666677777777666666542 224556666666
Q ss_pred HHHHc-CCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 004470 615 QHCLR-NDMRTTAKIYKGMCAQGITPD-GNTYNILLQGHCKARNMKEAWFLHKEMVQKGFNLTTSSYNALIKGFLKRKKY 692 (751)
Q Consensus 615 ~~~~~-g~~~~A~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~ 692 (751)
.+... |++++|.+.++++.+.+..|+ ...+..++..+...|++++|+..++++.+..+. +...+..++..+.+.|++
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~ 163 (225)
T 2vq2_A 85 FLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQ-FPPAFKELARTKMLAGQL 163 (225)
T ss_dssp HHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHTCH
T ss_pred HHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CchHHHHHHHHHHHcCCH
Confidence 66666 677777777666665222232 455666666666667777777776666665433 456666666666666777
Q ss_pred HHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcC
Q 004470 693 LEARELFEEMRRGGLV-ADREIYYFFVDINFEEGNTEITLELCDAAIECY 741 (751)
Q Consensus 693 ~~A~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 741 (751)
++|...++++.+.. + .+...+..++..+...|+.++|..+++.+.+..
T Consensus 164 ~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 212 (225)
T 2vq2_A 164 GDADYYFKKYQSRV-EVLQADDLLLGWKIAKALGNAQAAYEYEAQLQANF 212 (225)
T ss_dssp HHHHHHHHHHHHHH-CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhC-CCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhC
Confidence 77777766666643 3 455555556666666666666666666666544
No 56
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.54 E-value=2e-13 Score=136.60 Aligned_cols=245 Identities=11% Similarity=-0.043 Sum_probs=135.8
Q ss_pred CChhHHHHHHHHHHhCCCC---CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 004470 445 GGMKKAFSLHNNMVHMRLT---PNVVTYTALADGLCKSGELETANELLHEMCRKGLQLNIYTYNSIVNGLCKAGNILQAV 521 (751)
Q Consensus 445 g~~~~A~~~~~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~ 521 (751)
|++++|...++++.+.... .+..++..+...+...|++++|.+.++++.+.... +...+..+...+...|++++|.
T Consensus 19 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~la~~~~~~~~~~~A~ 97 (275)
T 1xnf_A 19 LQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPD-MPEVFNYLGIYLTQAGNFDAAY 97 (275)
T ss_dssp HHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHTTCHHHHH
T ss_pred chHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCC-cHHHHHHHHHHHHHccCHHHHH
Confidence 4455555555555543211 12344555555555555555555555555554322 4555555666666666666666
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcC
Q 004470 522 KLMEDMEVAGFHPDTFTYTTIMDAYCKSGEMVKAHELLRDMLDKGLQPSVVTFNVLMNGFCMSGMIEDGEKLLKWMLEKG 601 (751)
Q Consensus 522 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~g 601 (751)
..++++.+.. +.+..++..+...|.+.|++++|...++++.+.. |+.......+..+...|++++|...+++.....
T Consensus 98 ~~~~~al~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~ 174 (275)
T 1xnf_A 98 EAFDSVLELD-PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDD--PNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKS 174 (275)
T ss_dssp HHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHhcC-ccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHhcCHHHHHHHHHHHHhcC
Confidence 6666665543 3345566666666666666666666666666542 222223333333445566777777776665542
Q ss_pred CCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC--C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH
Q 004470 602 LKPNAATYNPLIKQHCLRNDMRTTAKIYKGMCAQGIT--P-DGNTYNILLQGHCKARNMKEAWFLHKEMVQKGFNLTTSS 678 (751)
Q Consensus 602 ~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~--p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~ 678 (751)
.++...+ .++..+...++.++|.+.++++.+.... | +...+..+...|.+.|++++|...++++++..+. +.
T Consensus 175 -~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~-- 249 (275)
T 1xnf_A 175 -DKEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVH-NF-- 249 (275)
T ss_dssp -CCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCT-TC--
T ss_pred -CcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCch-hH--
Confidence 2232222 3555556666667777777766543211 0 1456777778888888888888888888776432 22
Q ss_pred HHHHHHHHHhcCCHHHHHHHH
Q 004470 679 YNALIKGFLKRKKYLEARELF 699 (751)
Q Consensus 679 ~~~l~~~~~~~g~~~~A~~~~ 699 (751)
.....++...|++++|++.+
T Consensus 250 -~~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 250 -VEHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp -HHHHHHHHHHHHHHHC----
T ss_pred -HHHHHHHHHHHHHHhhHHHH
Confidence 23355666777777777665
No 57
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.54 E-value=1.2e-10 Score=129.52 Aligned_cols=446 Identities=10% Similarity=0.036 Sum_probs=287.6
Q ss_pred CHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCC---HHHHHH
Q 004470 271 KIKEAHLLLLQMELRGCSPDVVSFSTIINGYCYLGELQRVLKLIEEMQIKGLKPNPYTYNSVVRLLCKTSK---VVEAET 347 (751)
Q Consensus 271 ~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~---~~~A~~ 347 (751)
..++.+..|++....+. -|..+|..++..+.+.+.++.+..+|+++... .+.....|...+..-.+.|+ ++.+.+
T Consensus 47 ~~~d~i~~lE~~l~~np-~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~-fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~ 124 (679)
T 4e6h_A 47 DESDVIGKLNDMIEEQP-TDIFLYVKLLKHHVSLKQWKQVYETFDKLHDR-FPLMANIWCMRLSLEFDKMEELDAAVIEP 124 (679)
T ss_dssp CCSCHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHTC--CCCHHHHHH
T ss_pred CCHHHHHHHHHHHHHCc-CCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHhhCCcchHHHHHH
Confidence 34455656666665554 58999999999999999999999999999987 45567778888888888888 999999
Q ss_pred HHHHHHHCC-CCCCHHHHHHHHHHHHHcCCH--------HHHHHHHHHHHh-CCC-CC-CHHHHHHHHHHHH--------
Q 004470 348 ILREMMNQG-IVPDNVIYTTLIDGFCKMGNV--------AAAYRLFDEMRG-LNI-IP-DLLTYTAIICGFC-------- 407 (751)
Q Consensus 348 ~~~~m~~~g-~~p~~~~~~~li~~~~~~g~~--------~~A~~~~~~m~~-~~~-~p-~~~~~~~li~~~~-------- 407 (751)
+|++.+... .+|++..|...+....+.++. +...++|+.... .|. .| +...|...+.-..
T Consensus 125 lfeRal~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~ 204 (679)
T 4e6h_A 125 VLARCLSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKF 204 (679)
T ss_dssp HHHHHTCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHH
T ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcH
Confidence 999998873 137888888888776666654 334467776543 355 44 3567777775443
Q ss_pred -hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 004470 408 -LTGKMVEAEKLFHEMLGRGLEPDEIVYTALIDGYCKAGGMKKAFSLHNNMVHMRLTPNVVTYTALADGLCKSGELETAN 486 (751)
Q Consensus 408 -~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 486 (751)
.+++++.+..+|+.++......-..+|......--..+. ..+..++.+. ..+++.|.
T Consensus 205 eeq~~~~~~R~iy~raL~iP~~~~~~~w~~Y~~fe~~~~~-~~a~~~~~e~---------------------~~~y~~Ar 262 (679)
T 4e6h_A 205 EEQQRVQYIRKLYKTLLCQPMDCLESMWQRYTQWEQDVNQ-LTARRHIGEL---------------------SAQYMNAR 262 (679)
T ss_dssp HHHHHHHHHHHHHHHHTTSCCSSHHHHHHHHHHHHHHHCT-TTHHHHHHHH---------------------HHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhcCc-chHHHHHHHh---------------------hHHHHHHH
Confidence 234577888888888853111112333322211111111 1122222111 11223333
Q ss_pred HHHHHHHHc--CC----C-----------C-----C---HHHHHHHHHHHHHcC-------CHHHHHHHHHHHHHCCCCC
Q 004470 487 ELLHEMCRK--GL----Q-----------L-----N---IYTYNSIVNGLCKAG-------NILQAVKLMEDMEVAGFHP 534 (751)
Q Consensus 487 ~l~~~m~~~--g~----~-----------~-----~---~~~~~~li~~~~~~g-------~~~~A~~~~~~~~~~~~~~ 534 (751)
..+.++... ++ + | + ...|...+..--..+ ..+.+..+|+++.... +-
T Consensus 263 ~~~~e~~~~~~~l~r~~p~~~~~~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~~-p~ 341 (679)
T 4e6h_A 263 SLYQDWLNITKGLKRNLPITLNQATESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQHV-CF 341 (679)
T ss_dssp HHHHHHHHHTTTCCCCCCSSSTTCCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT-TT
T ss_pred HHHHHHHHHHHhHhhccccccccchhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHc-CC
Confidence 333332110 10 0 0 0 133444444322221 1234556777776653 55
Q ss_pred CHHHHHHHHHHHHHcCCHHHHH-HHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCC---------CC
Q 004470 535 DTFTYTTIMDAYCKSGEMVKAH-ELLRDMLDKGLQPSVVTFNVLMNGFCMSGMIEDGEKLLKWMLEKGL---------KP 604 (751)
Q Consensus 535 ~~~~~~~li~~~~~~g~~~~A~-~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~g~---------~p 604 (751)
....|...+..+...|+.++|. ++|++.... ++.+...|...+...-+.|++++|.++|+++++... .|
T Consensus 342 ~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~-~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p 420 (679)
T 4e6h_A 342 APEIWFNMANYQGEKNTDSTVITKYLKLGQQC-IPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDP 420 (679)
T ss_dssp CHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHST
T ss_pred CHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccC
Confidence 7777888888778888888886 888888864 455666677778888888888889888888876410 13
Q ss_pred C------------HhhHHHHHHHHHHcCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHC
Q 004470 605 N------------AATYNPLIKQHCLRNDMRTTAKIYKGMCAQ-GITPDGNTYNILLQGHCKA-RNMKEAWFLHKEMVQK 670 (751)
Q Consensus 605 ~------------~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~-g~~p~~~~~~~li~~~~~~-g~~~~A~~~~~~~~~~ 670 (751)
+ ..+|...+....+.|+.+.|..+|.++.+. + ......|...+..-.+. ++.+.|.++|+..++.
T Consensus 421 ~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~-~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~ 499 (679)
T 4e6h_A 421 TNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKK-LVTPDIYLENAYIEYHISKDTKTACKVLELGLKY 499 (679)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGG-GSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHH
T ss_pred cchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH
Confidence 1 235677777777788899999999988875 2 12233343333333344 4588999999998887
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCC
Q 004470 671 GFNLTTSSYNALIKGFLKRKKYLEARELFEEMRRGGLVA--DREIYYFFVDINFEEGNTEITLELCDAAIECYLVG 744 (751)
Q Consensus 671 ~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 744 (751)
- +.++..|...+......|+.+.|..+|++++....++ ....|..++..-.+.|+.+.+.++.+++.+..+.+
T Consensus 500 ~-p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~P~~ 574 (679)
T 4e6h_A 500 F-ATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKFPEV 574 (679)
T ss_dssp H-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHSTTC
T ss_pred C-CCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Confidence 3 3367777788888888899999999999988764222 33567777777778899999999999998886653
No 58
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.53 E-value=2.9e-13 Score=144.38 Aligned_cols=134 Identities=11% Similarity=0.037 Sum_probs=80.8
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-----CCHH
Q 004470 608 TYNPLIKQHCLRNDMRTTAKIYKGMCAQGI-TPD----GNTYNILLQGHCKARNMKEAWFLHKEMVQKGFN-----LTTS 677 (751)
Q Consensus 608 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~-~p~----~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~-----p~~~ 677 (751)
++..+...|...|++++|.+.+++..+... .++ ..++..+...|...|++++|...++++++.... ....
T Consensus 225 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 304 (411)
T 4a1s_A 225 ACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQ 304 (411)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 455555666666666666666666554210 011 225666677777777777777777766653111 0134
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCC----C-CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcC
Q 004470 678 SYNALIKGFLKRKKYLEARELFEEMRRGG----L-VADREIYYFFVDINFEEGNTEITLELCDAAIECY 741 (751)
Q Consensus 678 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~----~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 741 (751)
++..++..|...|++++|...++++++.. . ......+..++..|.+.|++++|.++++++++..
T Consensus 305 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 373 (411)
T 4a1s_A 305 SCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQLA 373 (411)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence 66677777777777777777777766521 0 0113456667777777777777777777776543
No 59
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.51 E-value=8.5e-13 Score=140.21 Aligned_cols=307 Identities=15% Similarity=0.082 Sum_probs=190.5
Q ss_pred CCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCCC
Q 004470 428 EPDEIVYTALIDGYCKAGGMKKAFSLHNNMVHMRLTPN----VVTYTALADGLCKSGELETANELLHEMCRK----GLQL 499 (751)
Q Consensus 428 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~----g~~~ 499 (751)
......+......+...|++++|...++++.+.... + ..++..+...+...|++++|...+++..+. +..|
T Consensus 6 ~~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 84 (406)
T 3sf4_A 6 EASCLELALEGERLCKSGDCRAGVSFFEAAVQVGTE-DLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQL 84 (406)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccH
Confidence 345566667777888888888888888888776432 3 356777788888888888888888876543 1111
Q ss_pred -CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHHHcCC--------------------HH
Q 004470 500 -NIYTYNSIVNGLCKAGNILQAVKLMEDMEVAGF-HPD----TFTYTTIMDAYCKSGE--------------------MV 553 (751)
Q Consensus 500 -~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-~~~----~~~~~~li~~~~~~g~--------------------~~ 553 (751)
....+..+...+...|++++|...+++..+... .++ ..++..+...|...|+ ++
T Consensus 85 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~ 164 (406)
T 3sf4_A 85 GEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQ 164 (406)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHH
Confidence 234666777778888888888888887765420 012 3466677777777777 77
Q ss_pred HHHHHHHHHHhC----CCC-CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCC-CCC----HhhHHHHHHHHHHcCCHH
Q 004470 554 KAHELLRDMLDK----GLQ-PSVVTFNVLMNGFCMSGMIEDGEKLLKWMLEKGL-KPN----AATYNPLIKQHCLRNDMR 623 (751)
Q Consensus 554 ~A~~~~~~~~~~----~~~-p~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~g~-~p~----~~~~~~l~~~~~~~g~~~ 623 (751)
+|.+.+++..+. +.. ....++..+...|...|++++|...+++..+... .++ ..++..+...|...|+++
T Consensus 165 ~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 244 (406)
T 3sf4_A 165 AAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFE 244 (406)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChH
Confidence 777777766532 111 1134566677777777777777777777664310 111 225666677777777777
Q ss_pred HHHHHHHHHHHCCC-CCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CC----HHHHHHHHHHHHhcCCHH
Q 004470 624 TTAKIYKGMCAQGI-TPD----GNTYNILLQGHCKARNMKEAWFLHKEMVQKGFN-LT----TSSYNALIKGFLKRKKYL 693 (751)
Q Consensus 624 ~A~~~~~~m~~~g~-~p~----~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~-p~----~~~~~~l~~~~~~~g~~~ 693 (751)
+|.+.+++..+... .++ ..++..+...|...|++++|...++++.+.... .+ ..++..++..|...|+++
T Consensus 245 ~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 324 (406)
T 3sf4_A 245 TASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHD 324 (406)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHH
Confidence 77777777664210 011 445666777777777777777777776653111 11 346666777777777777
Q ss_pred HHHHHHHHHHHCCCCCC-----HHHHHHHHHHHHhcCChhHHHHHHH
Q 004470 694 EARELFEEMRRGGLVAD-----REIYYFFVDINFEEGNTEITLELCD 735 (751)
Q Consensus 694 ~A~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~g~~~~A~~~~~ 735 (751)
+|...++++++..-... ..++..++..+...|+...+...+.
T Consensus 325 ~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~ 371 (406)
T 3sf4_A 325 QAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLSYSTNNSIM 371 (406)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTSCC-----
T ss_pred HHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHhHHHHHHHH
Confidence 77777777776431112 1344455555666666555444433
No 60
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.51 E-value=3.4e-13 Score=143.29 Aligned_cols=301 Identities=14% Similarity=0.074 Sum_probs=227.5
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHHcCChhHHHHHHHHHHhC----CCCC
Q 004470 393 IPDLLTYTAIICGFCLTGKMVEAEKLFHEMLGRGLEPD----EIVYTALIDGYCKAGGMKKAFSLHNNMVHM----RLTP 464 (751)
Q Consensus 393 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----~~~~ 464 (751)
.+....+......+...|++++|+..|++++..+ +.+ ...+..+...+...|++++|...++++.+. +..|
T Consensus 6 ~~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 84 (406)
T 3sf4_A 6 EASCLELALEGERLCKSGDCRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQL 84 (406)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccH
Confidence 3456677788889999999999999999998863 223 357888899999999999999999987643 2111
Q ss_pred -CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-CC----HHHHHHHHHHHHHcCC--------------------HH
Q 004470 465 -NVVTYTALADGLCKSGELETANELLHEMCRKGLQ-LN----IYTYNSIVNGLCKAGN--------------------IL 518 (751)
Q Consensus 465 -~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~-~~----~~~~~~li~~~~~~g~--------------------~~ 518 (751)
...++..+...+...|++++|...+++..+.... .+ ..++..+...+...|+ ++
T Consensus 85 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~ 164 (406)
T 3sf4_A 85 GEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQ 164 (406)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHH
Confidence 2557888899999999999999999998775211 12 3477888889999999 99
Q ss_pred HHHHHHHHHHHC----CC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCC-CCC----HHHHHHHHHHHHhcCChh
Q 004470 519 QAVKLMEDMEVA----GF-HPDTFTYTTIMDAYCKSGEMVKAHELLRDMLDKGL-QPS----VVTFNVLMNGFCMSGMIE 588 (751)
Q Consensus 519 ~A~~~~~~~~~~----~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-~p~----~~~~~~li~~~~~~g~~~ 588 (751)
+|...+++.... +. +....++..+...|...|++++|...+++..+... .++ ..++..+...|...|+++
T Consensus 165 ~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 244 (406)
T 3sf4_A 165 AAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFE 244 (406)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChH
Confidence 999999887542 11 11245678888999999999999999998875311 122 237888889999999999
Q ss_pred HHHHHHHHHHHcCCC-CC----HhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHHhcCCHH
Q 004470 589 DGEKLLKWMLEKGLK-PN----AATYNPLIKQHCLRNDMRTTAKIYKGMCAQGI-TPD----GNTYNILLQGHCKARNMK 658 (751)
Q Consensus 589 ~A~~l~~~~~~~g~~-p~----~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~-~p~----~~~~~~li~~~~~~g~~~ 658 (751)
+|...+++..+.... ++ ..++..+...|...|++++|.+.+++..+... .++ ..++..+...|...|+++
T Consensus 245 ~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 324 (406)
T 3sf4_A 245 TASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHD 324 (406)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHH
Confidence 999999998875211 12 45778888999999999999999999876311 112 557888899999999999
Q ss_pred HHHHHHHHHHHC----CCC-CCHHHHHHHHHHHHhcCCHHH
Q 004470 659 EAWFLHKEMVQK----GFN-LTTSSYNALIKGFLKRKKYLE 694 (751)
Q Consensus 659 ~A~~~~~~~~~~----~~~-p~~~~~~~l~~~~~~~g~~~~ 694 (751)
+|...++++.+. +.. ....++..+...+...|+...
T Consensus 325 ~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 365 (406)
T 3sf4_A 325 QAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLSYS 365 (406)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHhHH
Confidence 999999998763 111 123456666777766665543
No 61
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.51 E-value=9.9e-10 Score=122.18 Aligned_cols=220 Identities=8% Similarity=-0.044 Sum_probs=129.4
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHH-HHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 004470 450 AFSLHNNMVHMRLTPNVVTYTALADGLCKSGELETAN-ELLHEMCRKGLQLNIYTYNSIVNGLCKAGNILQAVKLMEDME 528 (751)
Q Consensus 450 A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~-~l~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 528 (751)
+..+|++++..- +-+...|...+..+.+.|+.++|. ++|++.... ++.+...|...+...-+.|++++|.++|+.+.
T Consensus 328 v~~~Ye~aL~~~-p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~-~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l 405 (679)
T 4e6h_A 328 MTYVYMQAAQHV-CFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQC-IPNSAVLAFSLSEQYELNTKIPEIETTILSCI 405 (679)
T ss_dssp HHHHHHHHHHHT-TTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHc-CCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 445566666543 236666776777667777777775 777777654 33455556666666677777777777777766
Q ss_pred HCCC---------CCC------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc-CC
Q 004470 529 VAGF---------HPD------------TFTYTTIMDAYCKSGEMVKAHELLRDMLDKGLQPSVVTFNVLMNGFCMS-GM 586 (751)
Q Consensus 529 ~~~~---------~~~------------~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~-g~ 586 (751)
.... .|+ ..+|...+....+.|..+.|..+|.++.+.-.......|...+..-.+. ++
T Consensus 406 ~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d 485 (679)
T 4e6h_A 406 DRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKD 485 (679)
T ss_dssp HHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSC
T ss_pred HHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCC
Confidence 4210 121 2345556666666677777777777776541111222332222222222 34
Q ss_pred hhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHhcCCHHHHHHHH
Q 004470 587 IEDGEKLLKWMLEKGLKPNAATYNPLIKQHCLRNDMRTTAKIYKGMCAQGITP--DGNTYNILLQGHCKARNMKEAWFLH 664 (751)
Q Consensus 587 ~~~A~~l~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p--~~~~~~~li~~~~~~g~~~~A~~~~ 664 (751)
.+.|.++|+..++. ..-+...+...+......|+.+.|..+|++.+.....+ ....|...+..-.+.|+.+.+.++.
T Consensus 486 ~e~Ar~ife~~Lk~-~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~ 564 (679)
T 4e6h_A 486 TKTACKVLELGLKY-FATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLE 564 (679)
T ss_dssp CHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHH
T ss_pred HHHHHHHHHHHHHH-CCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 67777777777665 22344555566666666777777777777776643211 2345666666666777777777777
Q ss_pred HHHHHCCC
Q 004470 665 KEMVQKGF 672 (751)
Q Consensus 665 ~~~~~~~~ 672 (751)
+++.+.-+
T Consensus 565 ~R~~~~~P 572 (679)
T 4e6h_A 565 KRFFEKFP 572 (679)
T ss_dssp HHHHHHST
T ss_pred HHHHHhCC
Confidence 77776543
No 62
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.50 E-value=1.1e-12 Score=134.98 Aligned_cols=269 Identities=13% Similarity=0.101 Sum_probs=156.3
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHC----CC-CCCHHHHHHHH
Q 004470 473 ADGLCKSGELETANELLHEMCRKGLQLN----IYTYNSIVNGLCKAGNILQAVKLMEDMEVA----GF-HPDTFTYTTIM 543 (751)
Q Consensus 473 i~~~~~~g~~~~A~~l~~~m~~~g~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----~~-~~~~~~~~~li 543 (751)
...+...|++++|...++++.+.... + ...+..+...+...|++++|...+++.... +. +....++..+.
T Consensus 12 g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~ 90 (338)
T 3ro2_A 12 GERLCKSGDCRAGVSFFEAAVQVGTE-DLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLG 90 (338)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHhhCcc-cHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHHHH
Confidence 33444444444444444444443211 2 133444444444555555555544443221 10 11133444555
Q ss_pred HHHHHcCCHHHHHHHHHHHHhCCC-CCC----HHHHHHHHHHHHhcCC--------------------hhHHHHHHHHHH
Q 004470 544 DAYCKSGEMVKAHELLRDMLDKGL-QPS----VVTFNVLMNGFCMSGM--------------------IEDGEKLLKWML 598 (751)
Q Consensus 544 ~~~~~~g~~~~A~~~~~~~~~~~~-~p~----~~~~~~li~~~~~~g~--------------------~~~A~~l~~~~~ 598 (751)
..+...|++++|...+++..+... .++ ..++..+...+...|+ +++|.+.+++..
T Consensus 91 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~ 170 (338)
T 3ro2_A 91 NTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENL 170 (338)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHH
Confidence 555555666666555555442100 011 2245555556666666 666666665554
Q ss_pred Hc----CCCC-CHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 004470 599 EK----GLKP-NAATYNPLIKQHCLRNDMRTTAKIYKGMCAQGI-TPD----GNTYNILLQGHCKARNMKEAWFLHKEMV 668 (751)
Q Consensus 599 ~~----g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~-~p~----~~~~~~li~~~~~~g~~~~A~~~~~~~~ 668 (751)
+. +..+ ...++..+...+...|++++|.+.+++..+... .++ ..++..+...+...|++++|...++++.
T Consensus 171 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 250 (338)
T 3ro2_A 171 SLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTL 250 (338)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 32 1111 123566667777778888888888777664210 011 3367778888888999999999888877
Q ss_pred HCCCC-CC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CC----CHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 004470 669 QKGFN-LT----TSSYNALIKGFLKRKKYLEARELFEEMRRGGL-VA----DREIYYFFVDINFEEGNTEITLELCDAAI 738 (751)
Q Consensus 669 ~~~~~-p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 738 (751)
+.... .+ ..++..++..+...|++++|...++++++... .. ....+..++..+.+.|++++|.+.+++++
T Consensus 251 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~ 330 (338)
T 3ro2_A 251 LLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHL 330 (338)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHH
Confidence 53211 11 45777888899999999999999998876310 11 13567788899999999999999999998
Q ss_pred HcCC
Q 004470 739 ECYL 742 (751)
Q Consensus 739 ~~~~ 742 (751)
+...
T Consensus 331 ~~~~ 334 (338)
T 3ro2_A 331 EISR 334 (338)
T ss_dssp HC--
T ss_pred HHHH
Confidence 8653
No 63
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.50 E-value=7.1e-13 Score=141.30 Aligned_cols=236 Identities=9% Similarity=0.010 Sum_probs=138.3
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHcCCCCCchhhhHHHHHHHHHhhhcCCCCh----hhHHHHHHHHHhcCChhHHH
Q 004470 130 EARCIVVQISVAAKDLKTAHGLIHDFWAKPNLDASIAFTHFVERLIYTYKDWGSDP----HVFDIFFQVLVEARKLNEAR 205 (751)
Q Consensus 130 ~~~~~~~~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~A~ 205 (751)
..+..++..+...|++++|...+++++... |.++ .++..++.+|...|++++|.
T Consensus 49 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~~----------------------~~~~~~~~~~~~~lg~~~~~~g~~~~A~ 106 (411)
T 4a1s_A 49 LELALEGERLCNAGDCRAGVAFFQAAIQAG----------------------TEDLRTLSAIYSQLGNAYFYLGDYNKAM 106 (411)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----------------------CSCHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHHHhc----------------------ccChhHHHHHHHHHHHHHHHCCCHHHHH
Confidence 445567888889999999999999988754 3333 46888999999999999999
Q ss_pred HHHHHHHhC----CCccCHHhHHHHHHHHHhCCCCHHHHHHHHHhchhcC-----CCcCHHHHHHHHHHHHhcCC-----
Q 004470 206 KLFEKLLNY----GLVISVDSCNLFLSRLSNTCDGLRMVVKSFTEFPELG-----ICWNTASYNIMIHCLCRFGK----- 271 (751)
Q Consensus 206 ~~~~~~~~~----g~~p~~~~~~~ll~~l~~~~~~~~~a~~~~~~~~~~~-----~~~~~~~~~~li~~~~~~g~----- 271 (751)
..|+++++. +..|........++.++...|++++|...|+++.+.. ......++..+...|...|+
T Consensus 107 ~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~ 186 (411)
T 4a1s_A 107 QYHKHDLTLAKSMNDRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQR 186 (411)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccc
Confidence 999988753 2234444444555555556777888877777765441 11134466667777777777
Q ss_pred ------------HHHHHHHHHHHHhc----CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CC----cccH
Q 004470 272 ------------IKEAHLLLLQMELR----GC-SPDVVSFSTIINGYCYLGELQRVLKLIEEMQIKGLK-PN----PYTY 329 (751)
Q Consensus 272 ------------~~~A~~~~~~m~~~----g~-~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~----~~~~ 329 (751)
+++|++.+++..+. +. .....++..+...+...|++++|.+.+++..+.... ++ ..++
T Consensus 187 ~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 266 (411)
T 4a1s_A 187 NPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRAN 266 (411)
T ss_dssp STTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred cchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHH
Confidence 66676666654331 10 011234555556666666666666666655432100 01 1144
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCC-----CCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 004470 330 NSVVRLLCKTSKVVEAETILREMMNQGIV-----PDNVIYTTLIDGFCKMGNVAAAYRLFDEM 387 (751)
Q Consensus 330 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~-----p~~~~~~~li~~~~~~g~~~~A~~~~~~m 387 (751)
..+...+...|++++|...+++....... ....++..+...|...|++++|...+++.
T Consensus 267 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 329 (411)
T 4a1s_A 267 SNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRH 329 (411)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 45555555555555555555544432100 00233444444444445555544444443
No 64
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.48 E-value=8.4e-12 Score=116.35 Aligned_cols=166 Identities=16% Similarity=0.094 Sum_probs=79.0
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhhHHHHHH
Q 004470 535 DTFTYTTIMDAYCKSGEMVKAHELLRDMLDKGLQPSVVTFNVLMNGFCMSGMIEDGEKLLKWMLEKGLKPNAATYNPLIK 614 (751)
Q Consensus 535 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~g~~p~~~~~~~l~~ 614 (751)
+..+|..+...|.+.|++++|++.|++.++.. +.+..++..+...|.+.|++++|...+........ .+...+..+..
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~~~ 81 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD-PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDT-TSAEAYYILGS 81 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-CCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCc-hhHHHHHHHHH
Confidence 34455555555555555555555555555442 23444555555555555555555555555544321 13333444444
Q ss_pred HHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 004470 615 QHCLRNDMRTTAKIYKGMCAQGITPDGNTYNILLQGHCKARNMKEAWFLHKEMVQKGFNLTTSSYNALIKGFLKRKKYLE 694 (751)
Q Consensus 615 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 694 (751)
.+...++++.|.+.+++..+.. +.+...+..+...|.+.|++++|++.|+++++..+. +..+|..++.+|.+.|++++
T Consensus 82 ~~~~~~~~~~a~~~~~~a~~~~-~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~lg~~~~~~g~~~~ 159 (184)
T 3vtx_A 82 ANFMIDEKQAAIDALQRAIALN-TVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPG-FIRAYQSIGLAYEGKGLRDE 159 (184)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcch-hhhHHHHHHHHHHHCCCHHH
Confidence 4444455555555544444421 123444444444444445555555544444444332 34444444444444444444
Q ss_pred HHHHHHHHHH
Q 004470 695 ARELFEEMRR 704 (751)
Q Consensus 695 A~~~~~~~~~ 704 (751)
|++.|+++++
T Consensus 160 A~~~~~~al~ 169 (184)
T 3vtx_A 160 AVKYFKKALE 169 (184)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 4444444444
No 65
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.47 E-value=5.5e-11 Score=121.09 Aligned_cols=186 Identities=13% Similarity=0.107 Sum_probs=91.0
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC-Hh-hHHHHHHHHHHcCCHHHHHHHHH
Q 004470 553 VKAHELLRDMLDKGLQPSVVTFNVLMNGFCMSGMIEDGEKLLKWMLEKGLKPN-AA-TYNPLIKQHCLRNDMRTTAKIYK 630 (751)
Q Consensus 553 ~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~g~~p~-~~-~~~~l~~~~~~~g~~~~A~~~~~ 630 (751)
++|..+|++.++.-.+.+...|..++..+.+.|++++|.++|+++++. .|+ .. .|..++..+.+.|++++|.++|+
T Consensus 81 ~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~ 158 (308)
T 2ond_A 81 DEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFK 158 (308)
T ss_dssp HHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS--SSSCTHHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--cccCccHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 555555555554211223445555555555555555555555555543 222 11 45555555555555555555555
Q ss_pred HHHHCCCCCCHHHHHHHHHHHH-hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CC
Q 004470 631 GMCAQGITPDGNTYNILLQGHC-KARNMKEAWFLHKEMVQKGFNLTTSSYNALIKGFLKRKKYLEARELFEEMRRGG-LV 708 (751)
Q Consensus 631 ~m~~~g~~p~~~~~~~li~~~~-~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~ 708 (751)
++++.+ +++...|...+.... ..|++++|.++|+++++..+. ++..|..++..+.+.|++++|+.+|+++++.. ++
T Consensus 159 ~a~~~~-p~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~ 236 (308)
T 2ond_A 159 KAREDA-RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGD-IPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLP 236 (308)
T ss_dssp HHHTST-TCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSC
T ss_pred HHHhcC-CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCC
Confidence 555432 122233322222211 145555555555555554332 45555555555555555555555555555532 23
Q ss_pred C--CHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCC
Q 004470 709 A--DREIYYFFVDINFEEGNTEITLELCDAAIECYL 742 (751)
Q Consensus 709 ~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 742 (751)
| ....|..++..+.+.|+.++|..+++++++...
T Consensus 237 p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~~~p 272 (308)
T 2ond_A 237 PEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFR 272 (308)
T ss_dssp GGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcc
Confidence 2 234555555555555555555555555555443
No 66
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.46 E-value=4.3e-12 Score=133.88 Aligned_cols=232 Identities=12% Similarity=0.019 Sum_probs=170.3
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CC----CCCHHHHH
Q 004470 507 IVNGLCKAGNILQAVKLMEDMEVA----GFHP-DTFTYTTIMDAYCKSGEMVKAHELLRDMLDK--GL----QPSVVTFN 575 (751)
Q Consensus 507 li~~~~~~g~~~~A~~~~~~~~~~----~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--~~----~p~~~~~~ 575 (751)
....+...|++++|...+++..+. +-.+ ...++..+...|...|++++|...+++..+. .. +....+++
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 188 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS 188 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 455667778888888888887653 1111 2456777888888888888888888877642 11 11235678
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHcCCC-CC----HhhHHHHHHHHHHcCCHHHHHHHHHHHHHC----CC-CCCHHHHH
Q 004470 576 VLMNGFCMSGMIEDGEKLLKWMLEKGLK-PN----AATYNPLIKQHCLRNDMRTTAKIYKGMCAQ----GI-TPDGNTYN 645 (751)
Q Consensus 576 ~li~~~~~~g~~~~A~~l~~~~~~~g~~-p~----~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~----g~-~p~~~~~~ 645 (751)
.+...|...|++++|...+++..+.... ++ ..++..+...|...|++++|.+.+++..+. +. +....++.
T Consensus 189 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 268 (383)
T 3ulq_A 189 LFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYF 268 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHH
Confidence 8888888999999999998888754111 11 246788888999999999999999988872 22 23466788
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCC----CCCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHHCCCCC-CHHHHHHH
Q 004470 646 ILLQGHCKARNMKEAWFLHKEMVQKG----FNLTTSSYNALIKGFLKRKK---YLEARELFEEMRRGGLVA-DREIYYFF 717 (751)
Q Consensus 646 ~li~~~~~~g~~~~A~~~~~~~~~~~----~~p~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~~-~~~~~~~l 717 (751)
.+...|.+.|++++|...++++++.. -......+..+...+...|+ +++|+.++++. +..| ....+..+
T Consensus 269 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~---~~~~~~~~~~~~l 345 (383)
T 3ulq_A 269 LITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK---MLYADLEDFAIDV 345 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT---TCHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC---cCHHHHHHHHHHH
Confidence 99999999999999999999987641 11122345678888888999 77787777765 2222 34567789
Q ss_pred HHHHHhcCChhHHHHHHHHHHHcC
Q 004470 718 VDINFEEGNTEITLELCDAAIECY 741 (751)
Q Consensus 718 ~~~~~~~g~~~~A~~~~~~~~~~~ 741 (751)
+..|.+.|++++|.+.++++++..
T Consensus 346 a~~y~~~g~~~~A~~~~~~al~~~ 369 (383)
T 3ulq_A 346 AKYYHERKNFQKASAYFLKVEQVR 369 (383)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHH
Confidence 999999999999999999998754
No 67
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.46 E-value=1.6e-12 Score=133.80 Aligned_cols=278 Identities=9% Similarity=0.024 Sum_probs=145.3
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHcCCCCCchhhhHHHHHHHHHhhhcCCCC----hhhHHHHHHHHHhcCChhHHH
Q 004470 130 EARCIVVQISVAAKDLKTAHGLIHDFWAKPNLDASIAFTHFVERLIYTYKDWGSD----PHVFDIFFQVLVEARKLNEAR 205 (751)
Q Consensus 130 ~~~~~~~~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~ 205 (751)
..+...+..+...|++++|...+++++... |.+ ..++..++.+|...|++++|.
T Consensus 6 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~~----------------------~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 63 (338)
T 3ro2_A 6 LELALEGERLCKSGDCRAGVSFFEAAVQVG----------------------TEDLKTLSAIYSQLGNAYFYLHDYAKAL 63 (338)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----------------------CSCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhhC----------------------cccHHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 345566778888899999999888887653 222 246778888888999999999
Q ss_pred HHHHHHHhC----CCccCHHhHHHHHHHHHhCCCCHHHHHHHHHhchhcCCC-cC----HHHHHHHHHHHHhcCC-----
Q 004470 206 KLFEKLLNY----GLVISVDSCNLFLSRLSNTCDGLRMVVKSFTEFPELGIC-WN----TASYNIMIHCLCRFGK----- 271 (751)
Q Consensus 206 ~~~~~~~~~----g~~p~~~~~~~ll~~l~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~li~~~~~~g~----- 271 (751)
+.++++++. +..|........++.++...|++++|...++++.+.... ++ ..++..+...+...|+
T Consensus 64 ~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 143 (338)
T 3ro2_A 64 EYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCP 143 (338)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSS
T ss_pred HHHHHHHHHhhcccccHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccc
Confidence 888887643 212222223333344444556666666666555432110 01 2245555555555555
Q ss_pred ---------------HHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCCcccHHHHHHH
Q 004470 272 ---------------IKEAHLLLLQMELRGCSPDVVSFSTIINGYCYLGELQRVLKLIEEMQIKGL-KPNPYTYNSVVRL 335 (751)
Q Consensus 272 ---------------~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~~~~~~li~~ 335 (751)
+++|...+++..... ...+. .....++..+...
T Consensus 144 ~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~-------------------------------~~~~~~~~~~~~~~~l~~~ 192 (338)
T 3ro2_A 144 GPQDTGEFPEDVRNALQAAVDLYEENLSLV-------------------------------TALGDRAAQGRAFGNLGNT 192 (338)
T ss_dssp SCC----CCHHHHHHHHHHHHHHHHHHHHH-------------------------------HHHTCHHHHHHHHHHHHHH
T ss_pred hhhhhhhhhhhHHHHHHHHHHHHHHHHHHH-------------------------------HhcCCHHHHHHHHHHHHHH
Confidence 555555554432210 00000 0012234444444
Q ss_pred HHhcCCHHHHHHHHHHHHHCC----C-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCC-CC----HHHHHHHHHH
Q 004470 336 LCKTSKVVEAETILREMMNQG----I-VPDNVIYTTLIDGFCKMGNVAAAYRLFDEMRGLNII-PD----LLTYTAIICG 405 (751)
Q Consensus 336 ~~~~g~~~~A~~~~~~m~~~g----~-~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~-p~----~~~~~~li~~ 405 (751)
+...|++++|.+.+++..+.. . .....++..+...+...|++++|...+++..+.... ++ ..++..+...
T Consensus 193 ~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~ 272 (338)
T 3ro2_A 193 HYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNT 272 (338)
T ss_dssp HHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHH
Confidence 444455555544444443210 0 001124455555555556666665555554322100 01 3345555566
Q ss_pred HHhcCCHHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHHhC
Q 004470 406 FCLTGKMVEAEKLFHEMLGR----GLEP-DEIVYTALIDGYCKAGGMKKAFSLHNNMVHM 460 (751)
Q Consensus 406 ~~~~g~~~~A~~~~~~m~~~----~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 460 (751)
+...|++++|...+++.... +..+ ...++..+...|.+.|++++|...+++..+.
T Consensus 273 ~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 332 (338)
T 3ro2_A 273 YTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEI 332 (338)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC
T ss_pred HHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 66666666666666655432 1000 1335556666666777777777777666653
No 68
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.45 E-value=2.5e-12 Score=139.34 Aligned_cols=212 Identities=13% Similarity=-0.015 Sum_probs=129.9
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCH-HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHH
Q 004470 517 ILQAVKLMEDMEVAGFHPDTFTYTTIMDAYCKSGEM-VKAHELLRDMLDKGLQPSVVTFNVLMNGFCMSGMIEDGEKLLK 595 (751)
Q Consensus 517 ~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~-~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~ 595 (751)
+++++..+++..... +.+...+..+...+...|++ ++|++.|++.++.. +.+...|..+...|...|++++|.+.|+
T Consensus 84 ~~~al~~l~~~~~~~-~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~ 161 (474)
T 4abn_A 84 MEKTLQQMEEVLGSA-QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE-PELVEAWNQLGEVYWKKGDVTSAHTCFS 161 (474)
T ss_dssp HHHHHHHHHHHHTTC-CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhccC-chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 344444555444332 33555556666666666666 66666666665542 3345566666666666666666666666
Q ss_pred HHHHcCCCCCHhhHHHHHHHHHHc---------CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc--------CCHH
Q 004470 596 WMLEKGLKPNAATYNPLIKQHCLR---------NDMRTTAKIYKGMCAQGITPDGNTYNILLQGHCKA--------RNMK 658 (751)
Q Consensus 596 ~~~~~g~~p~~~~~~~l~~~~~~~---------g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~--------g~~~ 658 (751)
+.++. .|+...+..+...|... |++++|.+.++++++.. +.+...|..+..+|... |+++
T Consensus 162 ~al~~--~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~~~~g~~~ 238 (474)
T 4abn_A 162 GALTH--CKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD-VLDGRSWYILGNAYLSLYFNTGQNPKISQ 238 (474)
T ss_dssp HHHTT--CCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHTTCCHHHHH
T ss_pred HHHhh--CCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHhhccccchHH
Confidence 66654 34455555666666666 66666777666666642 22456666666666666 6677
Q ss_pred HHHHHHHHHHHCCCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHH
Q 004470 659 EAWFLHKEMVQKGFN--LTTSSYNALIKGFLKRKKYLEARELFEEMRRGGLVADREIYYFFVDINFEEGNTEITLELC 734 (751)
Q Consensus 659 ~A~~~~~~~~~~~~~--p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 734 (751)
+|+..|+++++..+. .+...|..++.+|...|++++|++.|+++++.. +.+...+..+..++...|++++|++.+
T Consensus 239 ~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~a~~~l~~~~~~lg~~~eAi~~~ 315 (474)
T 4abn_A 239 QALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALD-PAWPEPQQREQQLLEFLSRLTSLLESK 315 (474)
T ss_dssp HHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 777777777765431 266677777777777777777777777776653 445566666677777777777776544
No 69
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.43 E-value=2.7e-11 Score=112.83 Aligned_cols=168 Identities=13% Similarity=-0.011 Sum_probs=135.9
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 004470 570 SVVTFNVLMNGFCMSGMIEDGEKLLKWMLEKGLKPNAATYNPLIKQHCLRNDMRTTAKIYKGMCAQGITPDGNTYNILLQ 649 (751)
Q Consensus 570 ~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~ 649 (751)
+...|..+...|...|++++|++.|++.++... -+..++..+...|...|++++|.+.++...... +.+...+..+..
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~ 81 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADP-NNVETLLKLGKTYMDIGLPNDAIESLKKFVVLD-TTSAEAYYILGS 81 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-chhHHHHHHHHH
Confidence 567788888888888888888888888887642 256778888888888888888888888887753 335667777788
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhH
Q 004470 650 GHCKARNMKEAWFLHKEMVQKGFNLTTSSYNALIKGFLKRKKYLEARELFEEMRRGGLVADREIYYFFVDINFEEGNTEI 729 (751)
Q Consensus 650 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 729 (751)
.+...+++++|...++++.+..+. +...+..++..|.+.|++++|++.|+++++.. +.+...+..++.+|.+.|++++
T Consensus 82 ~~~~~~~~~~a~~~~~~a~~~~~~-~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~lg~~~~~~g~~~~ 159 (184)
T 3vtx_A 82 ANFMIDEKQAAIDALQRAIALNTV-YADAYYKLGLVYDSMGEHDKAIEAYEKTISIK-PGFIRAYQSIGLAYEGKGLRDE 159 (184)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCcc-chHHHHHHHHHHHHhCCchhHHHHHHHHHHhc-chhhhHHHHHHHHHHHCCCHHH
Confidence 888888888888888888877554 67788888888888888888888888888864 5677888888888888888888
Q ss_pred HHHHHHHHHHcC
Q 004470 730 TLELCDAAIECY 741 (751)
Q Consensus 730 A~~~~~~~~~~~ 741 (751)
|++.++++++..
T Consensus 160 A~~~~~~al~~~ 171 (184)
T 3vtx_A 160 AVKYFKKALEKE 171 (184)
T ss_dssp HHHHHHHHHHTT
T ss_pred HHHHHHHHHhCC
Confidence 888888888764
No 70
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.42 E-value=1.8e-11 Score=128.99 Aligned_cols=230 Identities=7% Similarity=-0.038 Sum_probs=165.7
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHc----CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC--C----CCCHHHHH
Q 004470 472 LADGLCKSGELETANELLHEMCRK----GLQL-NIYTYNSIVNGLCKAGNILQAVKLMEDMEVAG--F----HPDTFTYT 540 (751)
Q Consensus 472 li~~~~~~g~~~~A~~l~~~m~~~----g~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~--~----~~~~~~~~ 540 (751)
....+...|++++|.+.+++..+. +..+ ...++..+...+...|++++|...+.+..+.. . +....+++
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 188 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS 188 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 556677788888888888887653 1111 23567777888888888888888888775421 0 11245677
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhCCC-CCC----HHHHHHHHHHHHhcCChhHHHHHHHHHHHc----CC-CCCHhhHH
Q 004470 541 TIMDAYCKSGEMVKAHELLRDMLDKGL-QPS----VVTFNVLMNGFCMSGMIEDGEKLLKWMLEK----GL-KPNAATYN 610 (751)
Q Consensus 541 ~li~~~~~~g~~~~A~~~~~~~~~~~~-~p~----~~~~~~li~~~~~~g~~~~A~~l~~~~~~~----g~-~p~~~~~~ 610 (751)
.+...|...|++++|.+.+++..+... .++ ..++..+...|...|++++|...+++..+. +. .....++.
T Consensus 189 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 268 (383)
T 3ulq_A 189 LFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYF 268 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHH
Confidence 888888899999999998888764310 111 246788888899999999999999888762 22 22356788
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHCCC---CC-CHHHHHHHHHHHHhcCC---HHHHHHHHHHHHHCCCCC-CHHHHHHH
Q 004470 611 PLIKQHCLRNDMRTTAKIYKGMCAQGI---TP-DGNTYNILLQGHCKARN---MKEAWFLHKEMVQKGFNL-TTSSYNAL 682 (751)
Q Consensus 611 ~l~~~~~~~g~~~~A~~~~~~m~~~g~---~p-~~~~~~~li~~~~~~g~---~~~A~~~~~~~~~~~~~p-~~~~~~~l 682 (751)
.+...|...|++++|.+.+++..+... .| ....+..+...+...|+ +++|+.++++. +..| ....+..+
T Consensus 269 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~---~~~~~~~~~~~~l 345 (383)
T 3ulq_A 269 LITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK---MLYADLEDFAIDV 345 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT---TCHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC---cCHHHHHHHHHHH
Confidence 888889999999999999998876210 11 12335677888888888 77888877766 2222 34477789
Q ss_pred HHHHHhcCCHHHHHHHHHHHHH
Q 004470 683 IKGFLKRKKYLEARELFEEMRR 704 (751)
Q Consensus 683 ~~~~~~~g~~~~A~~~~~~~~~ 704 (751)
+..|.+.|++++|...++++.+
T Consensus 346 a~~y~~~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 346 AKYYHERKNFQKASAYFLKVEQ 367 (383)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHH
Confidence 9999999999999999999876
No 71
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.42 E-value=3.8e-12 Score=137.90 Aligned_cols=211 Identities=11% Similarity=-0.031 Sum_probs=122.3
Q ss_pred ChHHHHHHHHhhhhCCCCChhHHHHHHHHHHhcCCh-HHHHHHHHHHHcCCCCCchhhhHHHHHHHHHhhhcCCCChhhH
Q 004470 110 DYRLVLDFFDWACLRREPILEARCIVVQISVAAKDL-KTAHGLIHDFWAKPNLDASIAFTHFVERLIYTYKDWGSDPHVF 188 (751)
Q Consensus 110 ~~~~al~~f~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~a~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 188 (751)
..+.|+..++......+.+...+..++..+...|++ ++|...++++++.. |.++.++
T Consensus 83 ~~~~al~~l~~~~~~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~----------------------p~~~~a~ 140 (474)
T 4abn_A 83 EMEKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE----------------------PELVEAW 140 (474)
T ss_dssp HHHHHHHHHHHHHTTCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC----------------------TTCHHHH
T ss_pred HHHHHHHHHHHHhccCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC----------------------CCCHHHH
Confidence 345566666655555566666777777777777777 77777777766544 4556667
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhCCCccCHHhHHHHHHHHHhCC---------CCHHHHHHHHHhchhcCCCcCHHHH
Q 004470 189 DIFFQVLVEARKLNEARKLFEKLLNYGLVISVDSCNLFLSRLSNTC---------DGLRMVVKSFTEFPELGICWNTASY 259 (751)
Q Consensus 189 ~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~l~~~~---------~~~~~a~~~~~~~~~~~~~~~~~~~ 259 (751)
..|+.+|.+.|++++|.+.|+++++. .|+. .....++.++... |++++|++.|+++.+..+. +...|
T Consensus 141 ~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~-~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~ 216 (474)
T 4abn_A 141 NQLGEVYWKKGDVTSAHTCFSGALTH--CKNK-VSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVL-DGRSW 216 (474)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHTT--CCCH-HHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhh--CCCH-HHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCC-CHHHH
Confidence 77777777777777777777777665 3553 3333344444455 6666666666666665443 55566
Q ss_pred HHHHHHHHhc--------CCHHHHHHHHHHHHhcCCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccH
Q 004470 260 NIMIHCLCRF--------GKIKEAHLLLLQMELRGCS--PDVVSFSTIINGYCYLGELQRVLKLIEEMQIKGLKPNPYTY 329 (751)
Q Consensus 260 ~~li~~~~~~--------g~~~~A~~~~~~m~~~g~~--p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~ 329 (751)
..+..+|... |++++|+..|++..+.... -+...|..+...|...|++++|.+.|++..+.. +.+..++
T Consensus 217 ~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~a~ 295 (474)
T 4abn_A 217 YILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALD-PAWPEPQ 295 (474)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHH
T ss_pred HHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHH
Confidence 6666666655 5566666666655543210 245555555555555555555555555555442 1133344
Q ss_pred HHHHHHHHhcCCHHHHHH
Q 004470 330 NSVVRLLCKTSKVVEAET 347 (751)
Q Consensus 330 ~~li~~~~~~g~~~~A~~ 347 (751)
..+...+...|++++|.+
T Consensus 296 ~~l~~~~~~lg~~~eAi~ 313 (474)
T 4abn_A 296 QREQQLLEFLSRLTSLLE 313 (474)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 455555555555555544
No 72
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.40 E-value=4.3e-11 Score=121.90 Aligned_cols=217 Identities=10% Similarity=0.006 Sum_probs=134.9
Q ss_pred HHHHHHHHhhhhCCCCChhHHHHHHHHHHh-------cCCh-------HHHHHHHHHHHc-CCCCCchhhhHHHHHHHHH
Q 004470 112 RLVLDFFDWACLRREPILEARCIVVQISVA-------AKDL-------KTAHGLIHDFWA-KPNLDASIAFTHFVERLIY 176 (751)
Q Consensus 112 ~~al~~f~~~~~~~~~~~~~~~~~~~~l~~-------~~~~-------~~a~~~l~~~~~-~~~~~~~~~~~~~~~~l~~ 176 (751)
+.|+..|+.+....|.+...+...+..+.. .|++ ++|..+++++++ .+
T Consensus 33 ~~a~~~~~~al~~~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~----------------- 95 (308)
T 2ond_A 33 KRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLL----------------- 95 (308)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTT-----------------
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhC-----------------
Confidence 578889999988889999999888888763 4776 889999999887 34
Q ss_pred hhhcCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCccCHH--hHHHHHHHHHhCCCCHHHHHHHHHhchhcCCCc
Q 004470 177 TYKDWGSDPHVFDIFFQVLVEARKLNEARKLFEKLLNYGLVISVD--SCNLFLSRLSNTCDGLRMVVKSFTEFPELGICW 254 (751)
Q Consensus 177 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~--~~~~ll~~l~~~~~~~~~a~~~~~~~~~~~~~~ 254 (751)
|.++.+|..++..+.+.|++++|..+|+++++. .|+.. .+..+...+ ...|++++|+++|+++.+..+.
T Consensus 96 -----p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~-~~~~~~~~A~~~~~~a~~~~p~- 166 (308)
T 2ond_A 96 -----KKNMLLYFAYADYEESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFA-RRAEGIKSGRMIFKKAREDART- 166 (308)
T ss_dssp -----TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS--SSSCTHHHHHHHHHHH-HHHHCHHHHHHHHHHHHTSTTC-
T ss_pred -----cccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--cccCccHHHHHHHHHH-HHhcCHHHHHHHHHHHHhcCCC-
Confidence 566778888999999999999999999999875 45432 233333222 3456666666666666665432
Q ss_pred CHHHHHHHHHHHH-hcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCC--CcccHH
Q 004470 255 NTASYNIMIHCLC-RFGKIKEAHLLLLQMELRGCSPDVVSFSTIINGYCYLGELQRVLKLIEEMQIKG-LKP--NPYTYN 330 (751)
Q Consensus 255 ~~~~~~~li~~~~-~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p--~~~~~~ 330 (751)
+...|...+.... ..|++++|..+|++..+... -+...|..++..+.+.|++++|..+|++..... ++| ....|.
T Consensus 167 ~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~ 245 (308)
T 2ond_A 167 RHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYG-DIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWA 245 (308)
T ss_dssp CTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHH
T ss_pred CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHH
Confidence 3333333222211 24666666666665544321 244555555555555566666666666555542 222 233455
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHC
Q 004470 331 SVVRLLCKTSKVVEAETILREMMNQ 355 (751)
Q Consensus 331 ~li~~~~~~g~~~~A~~~~~~m~~~ 355 (751)
.++..+.+.|+.++|..+++++.+.
T Consensus 246 ~~~~~~~~~g~~~~a~~~~~~a~~~ 270 (308)
T 2ond_A 246 RFLAFESNIGDLASILKVEKRRFTA 270 (308)
T ss_dssp HHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 5555555555555555555555543
No 73
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.37 E-value=6.4e-12 Score=127.94 Aligned_cols=241 Identities=17% Similarity=0.101 Sum_probs=174.2
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC-------CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC------C
Q 004470 500 NIYTYNSIVNGLCKAGNILQAVKLMEDMEVA-------GFHPDTFTYTTIMDAYCKSGEMVKAHELLRDMLDK------G 566 (751)
Q Consensus 500 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-------~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~------~ 566 (751)
+..++..+...+...|++++|..+++++.+. ..+....++..+...|...|++++|...++++.+. +
T Consensus 26 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 105 (311)
T 3nf1_A 26 RLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGK 105 (311)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCC
Confidence 4567888899999999999999999998773 22345677888999999999999999999998753 1
Q ss_pred -CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHc------CCCC-CHhhHHHHHHHHHHcCCHHHHHHHHHHHHHC---
Q 004470 567 -LQPSVVTFNVLMNGFCMSGMIEDGEKLLKWMLEK------GLKP-NAATYNPLIKQHCLRNDMRTTAKIYKGMCAQ--- 635 (751)
Q Consensus 567 -~~p~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~------g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~--- 635 (751)
.+....++..+...|...|++++|...++++.+. +..| ....+..+...+...|++++|.+.++++.+.
T Consensus 106 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~ 185 (311)
T 3nf1_A 106 DHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQT 185 (311)
T ss_dssp TCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 1234567888999999999999999999998865 2222 3456788888999999999999999998873
Q ss_pred ---CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-------CCCC-------HHHHHHHHHHHHhcCCHHHHHH
Q 004470 636 ---GITP-DGNTYNILLQGHCKARNMKEAWFLHKEMVQKG-------FNLT-------TSSYNALIKGFLKRKKYLEARE 697 (751)
Q Consensus 636 ---g~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~-------~~p~-------~~~~~~l~~~~~~~g~~~~A~~ 697 (751)
+..| ...++..+...|...|++++|...++++++.. ..+. ...+..+...+...+.+.+|..
T Consensus 186 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 265 (311)
T 3nf1_A 186 KLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGG 265 (311)
T ss_dssp TSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCCCC-
T ss_pred HhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHH
Confidence 2123 34568888999999999999999999998631 1111 1122223333445556666667
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcC
Q 004470 698 LFEEMRRGGLVADREIYYFFVDINFEEGNTEITLELCDAAIECY 741 (751)
Q Consensus 698 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 741 (751)
.++...... +.+..++..++.+|.+.|++++|.++++++++..
T Consensus 266 ~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~ 308 (311)
T 3nf1_A 266 WYKACKVDS-PTVTTTLKNLGALYRRQGKFEAAETLEEAAMRSR 308 (311)
T ss_dssp --------C-HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHhhcCCCC-chHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHh
Confidence 777766532 4456788899999999999999999999998754
No 74
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.37 E-value=1.2e-10 Score=122.53 Aligned_cols=230 Identities=11% Similarity=-0.013 Sum_probs=163.5
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhC----CC-C-CCHHHHH
Q 004470 507 IVNGLCKAGNILQAVKLMEDMEVAGF-HPD----TFTYTTIMDAYCKSGEMVKAHELLRDMLDK----GL-Q-PSVVTFN 575 (751)
Q Consensus 507 li~~~~~~g~~~~A~~~~~~~~~~~~-~~~----~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----~~-~-p~~~~~~ 575 (751)
....+...|++++|+..++++.+... .++ ..++..+...|...|++++|...+++..+. +- . ....+++
T Consensus 107 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 186 (378)
T 3q15_A 107 RGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLF 186 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHH
T ss_pred HHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHH
Confidence 34455677888888888887765310 122 456777778888888888888888877642 10 1 1245677
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHc----CCCC-CHhhHHHHHHHHHHcCCHHHHHHHHHHHHH-----CCCCCCHHHHH
Q 004470 576 VLMNGFCMSGMIEDGEKLLKWMLEK----GLKP-NAATYNPLIKQHCLRNDMRTTAKIYKGMCA-----QGITPDGNTYN 645 (751)
Q Consensus 576 ~li~~~~~~g~~~~A~~l~~~~~~~----g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~-----~g~~p~~~~~~ 645 (751)
.+...|...|++++|.+.+++..+. +..+ ...++..+...|...|++++|.+.+++.++ .. +....++.
T Consensus 187 ~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~-~~~~~~~~ 265 (378)
T 3q15_A 187 VIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVP-DLLPKVLF 265 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCG-GGHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCC-hhHHHHHH
Confidence 7888888888888888888887753 1111 134677788888899999999999988877 43 22367788
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCC---C-CHHHHHHHHHHHHhcCC---HHHHHHHHHHHHHCCCCC-CHHHHHHH
Q 004470 646 ILLQGHCKARNMKEAWFLHKEMVQKGFN---L-TTSSYNALIKGFLKRKK---YLEARELFEEMRRGGLVA-DREIYYFF 717 (751)
Q Consensus 646 ~li~~~~~~g~~~~A~~~~~~~~~~~~~---p-~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~~-~~~~~~~l 717 (751)
.+...+.+.|++++|...++++.+.... + ....+..+...+...|+ +++|+..+++. +..+ ....+..+
T Consensus 266 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~---~~~~~~~~~~~~l 342 (378)
T 3q15_A 266 GLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKK---NLHAYIEACARSA 342 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHT---TCHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhC---CChhHHHHHHHHH
Confidence 8899999999999999999998874211 1 23455666667777788 77787777762 2222 34566788
Q ss_pred HHHHHhcCChhHHHHHHHHHHHc
Q 004470 718 VDINFEEGNTEITLELCDAAIEC 740 (751)
Q Consensus 718 ~~~~~~~g~~~~A~~~~~~~~~~ 740 (751)
+..|.+.|++++|.+.++++++.
T Consensus 343 a~~y~~~g~~~~A~~~~~~al~~ 365 (378)
T 3q15_A 343 AAVFESSCHFEQAAAFYRKVLKA 365 (378)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHH
Confidence 89999999999999999998764
No 75
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.36 E-value=4e-10 Score=118.21 Aligned_cols=300 Identities=10% Similarity=0.028 Sum_probs=188.7
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHH----HHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CCCH----HHHH
Q 004470 435 TALIDGYCKAGGMKKAFSLHNNMVHMRLTPNVV----TYTALADGLCKSGELETANELLHEMCRKGL-QLNI----YTYN 505 (751)
Q Consensus 435 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~----~~~~li~~~~~~g~~~~A~~l~~~m~~~g~-~~~~----~~~~ 505 (751)
......+...|++++|...+++........+.. ++..+...+...|++++|.+.+++...... ..+. .++.
T Consensus 18 ~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 97 (373)
T 1hz4_A 18 ALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLI 97 (373)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHH
Confidence 344556677888888888888877654332322 456667777888888888888887765311 1122 2355
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHC----CCC--C-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCC----CCHHHH
Q 004470 506 SIVNGLCKAGNILQAVKLMEDMEVA----GFH--P-DTFTYTTIMDAYCKSGEMVKAHELLRDMLDKGLQ----PSVVTF 574 (751)
Q Consensus 506 ~li~~~~~~g~~~~A~~~~~~~~~~----~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~----p~~~~~ 574 (751)
.+...+...|++++|...+++..+. +.. | ....+..+...+...|++++|...+++..+.... ....++
T Consensus 98 ~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 177 (373)
T 1hz4_A 98 QQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCL 177 (373)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHH
Confidence 6677778888888888888877542 211 2 2345566777788888888888888877653211 123566
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHcCCCCCH-hhHH-----HHHHHHHHcCCHHHHHHHHHHHHHCCCCC---CHHHHH
Q 004470 575 NVLMNGFCMSGMIEDGEKLLKWMLEKGLKPNA-ATYN-----PLIKQHCLRNDMRTTAKIYKGMCAQGITP---DGNTYN 645 (751)
Q Consensus 575 ~~li~~~~~~g~~~~A~~l~~~~~~~g~~p~~-~~~~-----~l~~~~~~~g~~~~A~~~~~~m~~~g~~p---~~~~~~ 645 (751)
..+...+...|++++|...+++.......++. ..+. ..+..+...|+.++|...+++.......+ ....+.
T Consensus 178 ~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 257 (373)
T 1hz4_A 178 AMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWR 257 (373)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHH
Confidence 77777788888888888888877654212111 1111 22334667888888888888776533211 123456
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHC----CCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 004470 646 ILLQGHCKARNMKEAWFLHKEMVQK----GFNLTT-SSYNALIKGFLKRKKYLEARELFEEMRRGGLVADREIYYFFVDI 720 (751)
Q Consensus 646 ~li~~~~~~g~~~~A~~~~~~~~~~----~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 720 (751)
.+...+...|++++|...++++... |..++. ..+..+..++...|++++|...++++.+.. +. ......
T Consensus 258 ~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~--~~----~g~~~~ 331 (373)
T 1hz4_A 258 NIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLA--NR----TGFISH 331 (373)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH--HH----HCCCHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHh--cc----ccHHHH
Confidence 6677778888888888888777653 211122 256666777778888888888888877632 10 112233
Q ss_pred HHhcCChhHHHHHHHHHHHcCC
Q 004470 721 NFEEGNTEITLELCDAAIECYL 742 (751)
Q Consensus 721 ~~~~g~~~~A~~~~~~~~~~~~ 742 (751)
+...| +....++++++....
T Consensus 332 ~~~~g--~~~~~ll~~~~~~~~ 351 (373)
T 1hz4_A 332 FVIEG--EAMAQQLRQLIQLNT 351 (373)
T ss_dssp HHTTH--HHHHHHHHHHHHTTC
T ss_pred HHHcc--HHHHHHHHHHHhCCC
Confidence 44555 566667777666544
No 76
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.35 E-value=4.5e-12 Score=129.08 Aligned_cols=180 Identities=14% Similarity=0.032 Sum_probs=127.5
Q ss_pred CCChhHHHHHHHHHHhcCChHHHHHHHHHHHcCCCCCchhhhHHHHHHHHHhhhcCCCChhhHHHHHHHHHhcCChhHHH
Q 004470 126 EPILEARCIVVQISVAAKDLKTAHGLIHDFWAKPNLDASIAFTHFVERLIYTYKDWGSDPHVFDIFFQVLVEARKLNEAR 205 (751)
Q Consensus 126 ~~~~~~~~~~~~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 205 (751)
|....++..++..+...|++++|..++++++... .... -...+..+.++..++.+|...|++++|.
T Consensus 24 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~------------~~~~--~~~~~~~~~~~~~la~~~~~~g~~~~A~ 89 (311)
T 3nf1_A 24 PARLRTLHNLVIQYASQGRYEVAVPLCKQALEDL------------EKTS--GHDHPDVATMLNILALVYRDQNKYKDAA 89 (311)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH------------HHHH--CSSSHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH------------HHHc--CCCCHHHHHHHHHHHHHHHHCCCHHHHH
Confidence 4455778888999999999999999999987631 0000 0011233467889999999999999999
Q ss_pred HHHHHHHhC------CCccCHHhHHHHHHHHHhCCCCHHHHHHHHHhchhc------CC-CcCHHHHHHHHHHHHhcCCH
Q 004470 206 KLFEKLLNY------GLVISVDSCNLFLSRLSNTCDGLRMVVKSFTEFPEL------GI-CWNTASYNIMIHCLCRFGKI 272 (751)
Q Consensus 206 ~~~~~~~~~------g~~p~~~~~~~ll~~l~~~~~~~~~a~~~~~~~~~~------~~-~~~~~~~~~li~~~~~~g~~ 272 (751)
..|+++++. +..|........++.++...|++++|...|+++.+. +. .....++..+...+.+.|++
T Consensus 90 ~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~ 169 (311)
T 3nf1_A 90 NLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKY 169 (311)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCH
T ss_pred HHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCH
Confidence 999999865 333554555555666666788888888888887654 21 22355677788888888888
Q ss_pred HHHHHHHHHHHhc------CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004470 273 KEAHLLLLQMELR------GCSP-DVVSFSTIINGYCYLGELQRVLKLIEEMQI 319 (751)
Q Consensus 273 ~~A~~~~~~m~~~------g~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 319 (751)
++|++.|+++... +..| ...++..+...|...|++++|.+.++++.+
T Consensus 170 ~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 223 (311)
T 3nf1_A 170 EEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILT 223 (311)
T ss_dssp HHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 8888888887653 1112 234667777778888888888888887765
No 77
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.33 E-value=3.3e-10 Score=119.06 Aligned_cols=230 Identities=7% Similarity=-0.060 Sum_probs=158.8
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCC-CCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC--C---C-CCHHHH
Q 004470 471 ALADGLCKSGELETANELLHEMCRKGL-QLN----IYTYNSIVNGLCKAGNILQAVKLMEDMEVAG--F---H-PDTFTY 539 (751)
Q Consensus 471 ~li~~~~~~g~~~~A~~l~~~m~~~g~-~~~----~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~--~---~-~~~~~~ 539 (751)
.....+...|++++|...+++..+... .++ ..++..+...+...|+++.|...+++..+.. . . ....++
T Consensus 106 ~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 185 (378)
T 3q15_A 106 FRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSL 185 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHH
T ss_pred HHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHH
Confidence 344556677888888888877765311 112 3466777778888888888888887765421 0 1 124567
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhC----CCC-CCHHHHHHHHHHHHhcCChhHHHHHHHHHHH-----cCCCCCHhhH
Q 004470 540 TTIMDAYCKSGEMVKAHELLRDMLDK----GLQ-PSVVTFNVLMNGFCMSGMIEDGEKLLKWMLE-----KGLKPNAATY 609 (751)
Q Consensus 540 ~~li~~~~~~g~~~~A~~~~~~~~~~----~~~-p~~~~~~~li~~~~~~g~~~~A~~l~~~~~~-----~g~~p~~~~~ 609 (751)
+.+...|...|++++|.+.+++..+. +.+ ....++..+...|...|++++|...+++..+ .. +....++
T Consensus 186 ~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~-~~~~~~~ 264 (378)
T 3q15_A 186 FVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVP-DLLPKVL 264 (378)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCG-GGHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCC-hhHHHHH
Confidence 77888888888888888888877642 111 1234677788888888999999888888876 32 2235667
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHCCC---CCC-HHHHHHHHHHHHhcCC---HHHHHHHHHHHHHCCCCC-CHHHHHH
Q 004470 610 NPLIKQHCLRNDMRTTAKIYKGMCAQGI---TPD-GNTYNILLQGHCKARN---MKEAWFLHKEMVQKGFNL-TTSSYNA 681 (751)
Q Consensus 610 ~~l~~~~~~~g~~~~A~~~~~~m~~~g~---~p~-~~~~~~li~~~~~~g~---~~~A~~~~~~~~~~~~~p-~~~~~~~ 681 (751)
..+...|...|++++|.+.+++..+... .|. ...+..+...+...|+ +++|+..+++. +..| ....+..
T Consensus 265 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~---~~~~~~~~~~~~ 341 (378)
T 3q15_A 265 FGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKK---NLHAYIEACARS 341 (378)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHT---TCHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhC---CChhHHHHHHHH
Confidence 7888888899999999999988877311 122 3446666667777777 77777777762 2222 2346678
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHH
Q 004470 682 LIKGFLKRKKYLEARELFEEMRR 704 (751)
Q Consensus 682 l~~~~~~~g~~~~A~~~~~~~~~ 704 (751)
++..|...|++++|...|+++.+
T Consensus 342 la~~y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 342 AAAVFESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHH
Confidence 89999999999999999998875
No 78
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.32 E-value=1.3e-10 Score=107.83 Aligned_cols=166 Identities=10% Similarity=-0.060 Sum_probs=112.0
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 004470 573 TFNVLMNGFCMSGMIEDGEKLLKWMLEKGLKPNAATYNPLIKQHCLRNDMRTTAKIYKGMCAQGITPDGNTYNILLQGHC 652 (751)
Q Consensus 573 ~~~~li~~~~~~g~~~~A~~l~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~ 652 (751)
.+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|.+.++++.+.. +.+...+..++..+.
T Consensus 10 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~ 87 (186)
T 3as5_A 10 YYRDKGISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTYV 87 (186)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHH
Confidence 34455555556666666666666555432 2244555666666666666666666666666542 235666677777777
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHH
Q 004470 653 KARNMKEAWFLHKEMVQKGFNLTTSSYNALIKGFLKRKKYLEARELFEEMRRGGLVADREIYYFFVDINFEEGNTEITLE 732 (751)
Q Consensus 653 ~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 732 (751)
..|++++|.+.++++.+..+. +...+..++..+...|++++|...++++.+.. +.+...+..++..+...|++++|.+
T Consensus 88 ~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~ 165 (186)
T 3as5_A 88 QVQKYDLAVPLLIKVAEANPI-NFNVRFRLGVALDNLGRFDEAIDSFKIALGLR-PNEGKVHRAIAFSYEQMGRHEEALP 165 (186)
T ss_dssp HHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HhcCHHHHHHHHHHHHhcCcH-hHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCHHHHHH
Confidence 777777777777777776433 66777777777888888888888888877754 4566777777888888888888888
Q ss_pred HHHHHHHcCC
Q 004470 733 LCDAAIECYL 742 (751)
Q Consensus 733 ~~~~~~~~~~ 742 (751)
.++++++...
T Consensus 166 ~~~~~~~~~~ 175 (186)
T 3as5_A 166 HFKKANELDE 175 (186)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHcCC
Confidence 8888776653
No 79
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.32 E-value=7.4e-11 Score=132.89 Aligned_cols=167 Identities=13% Similarity=-0.018 Sum_probs=107.4
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 004470 570 SVVTFNVLMNGFCMSGMIEDGEKLLKWMLEKGLKPNAATYNPLIKQHCLRNDMRTTAKIYKGMCAQGITPDGNTYNILLQ 649 (751)
Q Consensus 570 ~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~ 649 (751)
+..+|+.|...|.+.|++++|++.|++.++... -+...|..+...|.+.|++++|++.|++.++.. +-+...|..+..
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P-~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~-P~~~~a~~nLg~ 85 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKALEVFP-EFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS-PTFADAYSNMGN 85 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 345566666666666666666666666665421 134556666666666666666666666666632 124566666777
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhH
Q 004470 650 GHCKARNMKEAWFLHKEMVQKGFNLTTSSYNALIKGFLKRKKYLEARELFEEMRRGGLVADREIYYFFVDINFEEGNTEI 729 (751)
Q Consensus 650 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 729 (751)
.|.+.|++++|++.|+++++..+. +...|..++.+|.+.|++++|++.|+++++.. +.+...+..++.+|...|++++
T Consensus 86 ~l~~~g~~~~A~~~~~kAl~l~P~-~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~-P~~~~a~~~L~~~l~~~g~~~~ 163 (723)
T 4gyw_A 86 TLKEMQDVQGALQCYTRAIQINPA-FADAHSNLASIHKDSGNIPEAIASYRTALKLK-PDFPDAYCNLAHCLQIVCDWTD 163 (723)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCCTT
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHhhhhhHHHhcccHHH
Confidence 777777777777777777666544 56667777777777777777777777777653 4456666677777777777777
Q ss_pred HHHHHHHHHHc
Q 004470 730 TLELCDAAIEC 740 (751)
Q Consensus 730 A~~~~~~~~~~ 740 (751)
|.+.++++++.
T Consensus 164 A~~~~~kal~l 174 (723)
T 4gyw_A 164 YDERMKKLVSI 174 (723)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 77777666553
No 80
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.28 E-value=1.5e-09 Score=113.85 Aligned_cols=299 Identities=12% Similarity=0.021 Sum_probs=211.1
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH----HHHHHHHHHHHcCChhHHHHHHHHHHhCCCC-CCH----HHHH
Q 004470 400 TAIICGFCLTGKMVEAEKLFHEMLGRGLEPDEI----VYTALIDGYCKAGGMKKAFSLHNNMVHMRLT-PNV----VTYT 470 (751)
Q Consensus 400 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~----~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~-~~~----~~~~ 470 (751)
......+...|++++|...+++.+......+.. .+..+...+...|++++|...+++....... .+. .++.
T Consensus 18 ~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 97 (373)
T 1hz4_A 18 ALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLI 97 (373)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHH
Confidence 344456778899999999999988764222332 5667778888999999999999988753211 122 3356
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHc----CCC--C-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC----CCHHHH
Q 004470 471 ALADGLCKSGELETANELLHEMCRK----GLQ--L-NIYTYNSIVNGLCKAGNILQAVKLMEDMEVAGFH----PDTFTY 539 (751)
Q Consensus 471 ~li~~~~~~g~~~~A~~l~~~m~~~----g~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~----~~~~~~ 539 (751)
.+...+...|++++|...+++..+. +.. | ....+..+...+...|++++|...+++....... ....++
T Consensus 98 ~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 177 (373)
T 1hz4_A 98 QQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCL 177 (373)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHH
Confidence 7788899999999999999988653 221 2 2346677888899999999999999998764311 124567
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhCCCCC-C-HHHHH----HHHHHHHhcCChhHHHHHHHHHHHcCCCCC---HhhHH
Q 004470 540 TTIMDAYCKSGEMVKAHELLRDMLDKGLQP-S-VVTFN----VLMNGFCMSGMIEDGEKLLKWMLEKGLKPN---AATYN 610 (751)
Q Consensus 540 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~p-~-~~~~~----~li~~~~~~g~~~~A~~l~~~~~~~g~~p~---~~~~~ 610 (751)
..+...+...|++++|...+++.......+ . ..... ..+..+...|+.++|...+++.......+. ...+.
T Consensus 178 ~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 257 (373)
T 1hz4_A 178 AMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWR 257 (373)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHH
Confidence 788889999999999999999887531111 1 22111 233447789999999999988876432211 22466
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHC----CCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 004470 611 PLIKQHCLRNDMRTTAKIYKGMCAQ----GITPDG-NTYNILLQGHCKARNMKEAWFLHKEMVQKGFNLTTSSYNALIKG 685 (751)
Q Consensus 611 ~l~~~~~~~g~~~~A~~~~~~m~~~----g~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~ 685 (751)
.+...+...|++++|.+.+++.... |..++. ..+..+...+...|+.++|...+++....... ...+..
T Consensus 258 ~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~~~------~g~~~~ 331 (373)
T 1hz4_A 258 NIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANR------TGFISH 331 (373)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH------HCCCHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcc------ccHHHH
Confidence 7788899999999999999988652 222222 35667788889999999999999999875211 112334
Q ss_pred HHhcCCHHHHHHHHHHHHHCC
Q 004470 686 FLKRKKYLEARELFEEMRRGG 706 (751)
Q Consensus 686 ~~~~g~~~~A~~~~~~~~~~~ 706 (751)
+...| +....+++.+....
T Consensus 332 ~~~~g--~~~~~ll~~~~~~~ 350 (373)
T 1hz4_A 332 FVIEG--EAMAQQLRQLIQLN 350 (373)
T ss_dssp HHTTH--HHHHHHHHHHHHTT
T ss_pred HHHcc--HHHHHHHHHHHhCC
Confidence 45555 66777778777753
No 81
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.28 E-value=2.9e-10 Score=110.03 Aligned_cols=199 Identities=11% Similarity=-0.056 Sum_probs=153.1
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhhHHHH
Q 004470 533 HPDTFTYTTIMDAYCKSGEMVKAHELLRDMLDKGLQPSVVTFNVLMNGFCMSGMIEDGEKLLKWMLEKGLKPNAATYNPL 612 (751)
Q Consensus 533 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~g~~p~~~~~~~l 612 (751)
+.|+..+......+...|++++|...|++.++...+++...+..+..++...|++++|++.+++..+.... +...+..+
T Consensus 4 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l 82 (228)
T 4i17_A 4 TTDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYN-LANAYIGK 82 (228)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCS-HHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcc-hHHHHHHH
Confidence 35668888888999999999999999999988754378888888899999999999999999999886322 56678888
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHCCCCCCH-------HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC---HHHHHHH
Q 004470 613 IKQHCLRNDMRTTAKIYKGMCAQGITPDG-------NTYNILLQGHCKARNMKEAWFLHKEMVQKGFNLT---TSSYNAL 682 (751)
Q Consensus 613 ~~~~~~~g~~~~A~~~~~~m~~~g~~p~~-------~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~---~~~~~~l 682 (751)
...|...|++++|.+.+++.++.. +.+. ..|..+...+...|++++|++.|+++++.+ |+ ...+..+
T Consensus 83 ~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~~~l 159 (228)
T 4i17_A 83 SAAYRDMKNNQEYIATLTEGIKAV-PGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVT--SKKWKTDALYSL 159 (228)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSS--CHHHHHHHHHHH
T ss_pred HHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcC--CCcccHHHHHHH
Confidence 899999999999999999998853 2244 457788888889999999999999998763 33 4677788
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCC
Q 004470 683 IKGFLKRKKYLEARELFEEMRRGGLVADREIYYFFVDINFEEGNTEITLELCDAAIECYLV 743 (751)
Q Consensus 683 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 743 (751)
+.+|...| ...++++...+ ..+...|... .....|.+++|++.++++++..+.
T Consensus 160 ~~~~~~~~-----~~~~~~a~~~~-~~~~~~~~~~--~~~~~~~~~~A~~~~~~a~~l~p~ 212 (228)
T 4i17_A 160 GVLFYNNG-----ADVLRKATPLA-SSNKEKYASE--KAKADAAFKKAVDYLGEAVTLSPN 212 (228)
T ss_dssp HHHHHHHH-----HHHHHHHGGGT-TTCHHHHHHH--HHHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHH-----HHHHHHHHhcc-cCCHHHHHHH--HHHHHHHHHHHHHHHHHHhhcCCC
Confidence 88876544 44456665543 3344444333 344557789999999999987654
No 82
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.27 E-value=9e-11 Score=132.22 Aligned_cols=168 Identities=8% Similarity=-0.010 Sum_probs=111.0
Q ss_pred CCChhHHHHHHHHHHhcCChHHHHHHHHHHHcCCCCCchhhhHHHHHHHHHhhhcCCCChhhHHHHHHHHHhcCChhHHH
Q 004470 126 EPILEARCIVVQISVAAKDLKTAHGLIHDFWAKPNLDASIAFTHFVERLIYTYKDWGSDPHVFDIFFQVLVEARKLNEAR 205 (751)
Q Consensus 126 ~~~~~~~~~~~~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 205 (751)
|.+.+++..++.++...|++++|...++++++.. |.++.++..|+.+|.+.|++++|+
T Consensus 6 P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~----------------------P~~~~a~~nLg~~l~~~g~~~eA~ 63 (723)
T 4gyw_A 6 PTHADSLNNLANIKREQGNIEEAVRLYRKALEVF----------------------PEFAAAHSNLASVLQQQGKLQEAL 63 (723)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----------------------SCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC----------------------CCCHHHHHHHHHHHHHcCCHHHHH
Confidence 4455667777777777777777777777766554 555666777777777777777777
Q ss_pred HHHHHHHhCCCccCHHhHHHHHHHHHhCCCCHHHHHHHHHhchhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 004470 206 KLFEKLLNYGLVISVDSCNLFLSRLSNTCDGLRMVVKSFTEFPELGICWNTASYNIMIHCLCRFGKIKEAHLLLLQMELR 285 (751)
Q Consensus 206 ~~~~~~~~~g~~p~~~~~~~ll~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 285 (751)
+.|+++++. .|+.......++.++...|++++|++.|+++++..+. +..+|+.+...|.+.|++++|++.|++..+.
T Consensus 64 ~~~~~Al~l--~P~~~~a~~nLg~~l~~~g~~~~A~~~~~kAl~l~P~-~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l 140 (723)
T 4gyw_A 64 MHYKEAIRI--SPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPA-FADAHSNLASIHKDSGNIPEAIASYRTALKL 140 (723)
T ss_dssp HHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 777777765 4555544444555555667777777777777766554 5666777777777777777777777776654
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004470 286 GCSPDVVSFSTIINGYCYLGELQRVLKLIEEMQI 319 (751)
Q Consensus 286 g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 319 (751)
.. -+...|..+...+...|++++|.+.++++.+
T Consensus 141 ~P-~~~~a~~~L~~~l~~~g~~~~A~~~~~kal~ 173 (723)
T 4gyw_A 141 KP-DFPDAYCNLAHCLQIVCDWTDYDERMKKLVS 173 (723)
T ss_dssp CS-CCHHHHHHHHHHHHHTTCCTTHHHHHHHHHH
T ss_pred CC-CChHHHhhhhhHHHhcccHHHHHHHHHHHHH
Confidence 32 2456666677777777777776666666543
No 83
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.25 E-value=8.3e-10 Score=102.35 Aligned_cols=165 Identities=16% Similarity=0.041 Sum_probs=117.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHH
Q 004470 537 FTYTTIMDAYCKSGEMVKAHELLRDMLDKGLQPSVVTFNVLMNGFCMSGMIEDGEKLLKWMLEKGLKPNAATYNPLIKQH 616 (751)
Q Consensus 537 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~g~~p~~~~~~~l~~~~ 616 (751)
..+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|...++++.+.. +.+...+..+...+
T Consensus 9 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~ 86 (186)
T 3as5_A 9 VYYRDKGISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTY 86 (186)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHH
Confidence 345556666667777777777777666543 3456667777777777777777777777776652 23556666777777
Q ss_pred HHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 004470 617 CLRNDMRTTAKIYKGMCAQGITPDGNTYNILLQGHCKARNMKEAWFLHKEMVQKGFNLTTSSYNALIKGFLKRKKYLEAR 696 (751)
Q Consensus 617 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~ 696 (751)
...|++++|.+.++++.+.. +.+...+..++..+...|++++|...++++.+..+. +...+..++..+...|++++|.
T Consensus 87 ~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~ 164 (186)
T 3as5_A 87 VQVQKYDLAVPLLIKVAEAN-PINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPN-EGKVHRAIAFSYEQMGRHEEAL 164 (186)
T ss_dssp HHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHhcCHHHHHHHHHHHHhcC-cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHcCCHHHHH
Confidence 77777777777777777643 345667777778888888888888888888776543 6777888888888888888888
Q ss_pred HHHHHHHHC
Q 004470 697 ELFEEMRRG 705 (751)
Q Consensus 697 ~~~~~~~~~ 705 (751)
..++++.+.
T Consensus 165 ~~~~~~~~~ 173 (186)
T 3as5_A 165 PHFKKANEL 173 (186)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHc
Confidence 888887763
No 84
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.21 E-value=9.1e-11 Score=117.35 Aligned_cols=228 Identities=18% Similarity=0.076 Sum_probs=158.8
Q ss_pred HHcCCHHHHHHHHHHHHH-------CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC------CC-CCCHHHHHHH
Q 004470 512 CKAGNILQAVKLMEDMEV-------AGFHPDTFTYTTIMDAYCKSGEMVKAHELLRDMLDK------GL-QPSVVTFNVL 577 (751)
Q Consensus 512 ~~~g~~~~A~~~~~~~~~-------~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~------~~-~p~~~~~~~l 577 (751)
...|++++|+..+++..+ ...+....++..+...|...|++++|...++++.+. +- +....++..+
T Consensus 12 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 91 (283)
T 3edt_B 12 SGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNL 91 (283)
T ss_dssp -CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHH
Confidence 345666666666666544 222334677888999999999999999999998754 11 2245678889
Q ss_pred HHHHHhcCChhHHHHHHHHHHHc------CCCC-CHhhHHHHHHHHHHcCCHHHHHHHHHHHHHC------CCCC-CHHH
Q 004470 578 MNGFCMSGMIEDGEKLLKWMLEK------GLKP-NAATYNPLIKQHCLRNDMRTTAKIYKGMCAQ------GITP-DGNT 643 (751)
Q Consensus 578 i~~~~~~g~~~~A~~l~~~~~~~------g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~------g~~p-~~~~ 643 (751)
...|...|++++|...++++.+. ...| ...++..+...|...|++++|.+.++++++. +..| ...+
T Consensus 92 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 171 (283)
T 3edt_B 92 AVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKT 171 (283)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 99999999999999999998865 1112 3567888889999999999999999998874 1123 3567
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHC-------CCCC-CHHHHHHHHHHHHhcCCHH------HHHHHHHHHHHCCCCC
Q 004470 644 YNILLQGHCKARNMKEAWFLHKEMVQK-------GFNL-TTSSYNALIKGFLKRKKYL------EARELFEEMRRGGLVA 709 (751)
Q Consensus 644 ~~~li~~~~~~g~~~~A~~~~~~~~~~-------~~~p-~~~~~~~l~~~~~~~g~~~------~A~~~~~~~~~~~~~~ 709 (751)
+..+...|...|++++|...++++++. ...+ ....+..+...+...+... ++...++.... ..+.
T Consensus 172 ~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 250 (283)
T 3edt_B 172 KNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKV-DSPT 250 (283)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCC-CCHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCC-CCHH
Confidence 888999999999999999999998863 1111 2334444444444433322 22222222111 1122
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 004470 710 DREIYYFFVDINFEEGNTEITLELCDAAIEC 740 (751)
Q Consensus 710 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 740 (751)
....+..++..|.+.|++++|.++++++++.
T Consensus 251 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 281 (283)
T 3edt_B 251 VNTTLRSLGALYRRQGKLEAAHTLEDCASRN 281 (283)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 3467788999999999999999999999874
No 85
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.19 E-value=2.2e-09 Score=103.66 Aligned_cols=208 Identities=10% Similarity=-0.061 Sum_probs=163.4
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 004470 499 LNIYTYNSIVNGLCKAGNILQAVKLMEDMEVAGFHPDTFTYTTIMDAYCKSGEMVKAHELLRDMLDKGLQPSVVTFNVLM 578 (751)
Q Consensus 499 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li 578 (751)
.|+..+......+...|++++|+..|++..+...+++...+..+..++...|++++|...+++..+.. +.+...+..+.
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~ 83 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKN-YNLANAYIGKS 83 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-CSHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhC-cchHHHHHHHH
Confidence 46788889999999999999999999999987633788888889999999999999999999999874 44677899999
Q ss_pred HHHHhcCChhHHHHHHHHHHHcCCCCCH-------hhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC---HHHHHHHH
Q 004470 579 NGFCMSGMIEDGEKLLKWMLEKGLKPNA-------ATYNPLIKQHCLRNDMRTTAKIYKGMCAQGITPD---GNTYNILL 648 (751)
Q Consensus 579 ~~~~~~g~~~~A~~l~~~~~~~g~~p~~-------~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~---~~~~~~li 648 (751)
..|...|++++|...+++..+.... +. ..|..+...+...|++++|.+.|+++++. .|+ ...+..+.
T Consensus 84 ~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~l~ 160 (228)
T 4i17_A 84 AAYRDMKNNQEYIATLTEGIKAVPG-NATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDV--TSKKWKTDALYSLG 160 (228)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--SCHHHHHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhc--CCCcccHHHHHHHH
Confidence 9999999999999999999986322 34 45778888899999999999999999985 455 46677777
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 004470 649 QGHCKARNMKEAWFLHKEMVQKGFNLTTSSYNALIKGFLKRKKYLEARELFEEMRRGGLVADREIYYFFVD 719 (751)
Q Consensus 649 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 719 (751)
..|...| ...++++...+.. +...|.... ....+.+++|+..++++++.. |.+......+..
T Consensus 161 ~~~~~~~-----~~~~~~a~~~~~~-~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l~-p~~~~~~~~l~~ 222 (228)
T 4i17_A 161 VLFYNNG-----ADVLRKATPLASS-NKEKYASEK--AKADAAFKKAVDYLGEAVTLS-PNRTEIKQMQDQ 222 (228)
T ss_dssp HHHHHHH-----HHHHHHHGGGTTT-CHHHHHHHH--HHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHH-----HHHHHHHHhcccC-CHHHHHHHH--HHHHHHHHHHHHHHHHHhhcC-CCCHHHHHHHHH
Confidence 7776544 4455666555433 455554443 344677999999999999864 445555554443
No 86
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.18 E-value=8.6e-09 Score=101.71 Aligned_cols=203 Identities=12% Similarity=0.092 Sum_probs=122.5
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCC-CCCHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 004470 520 AVKLMEDMEVAGFHPDTFTYTTIMDAYCKSGEMVKAHELLRDMLDKGL-QPSVVTFNVLMNGFCMSGMIEDGEKLLKWML 598 (751)
Q Consensus 520 A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-~p~~~~~~~li~~~~~~g~~~~A~~l~~~~~ 598 (751)
|+..+++..+.+ .++..++..+..++...|++++|++++.+.+..+. .-+...+..++..+.+.|+.+.|.+.+++|.
T Consensus 85 a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~ 163 (310)
T 3mv2_B 85 NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYT 163 (310)
T ss_dssp CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 556666655544 44555555666677777777777777777665542 1355566667777777777777777777776
Q ss_pred HcCCCC-----CHhhHHHHHHH--HHHcC--CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004470 599 EKGLKP-----NAATYNPLIKQ--HCLRN--DMRTTAKIYKGMCAQGITPDGNTYNILLQGHCKARNMKEAWFLHKEMVQ 669 (751)
Q Consensus 599 ~~g~~p-----~~~~~~~l~~~--~~~~g--~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 669 (751)
+. .| +..+...+..+ ....| +..+|..+|+++.+. .|+..+-..+..++.+.|++++|.+.++.+.+
T Consensus 164 ~~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~--~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~ 239 (310)
T 3mv2_B 164 NA--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT--FPTWKTQLGLLNLHLQQRNIAEAQGIVELLLS 239 (310)
T ss_dssp HH--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHS
T ss_pred hc--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--CCCcccHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 64 44 23444444444 33334 677777777777653 34433333444477778888888888776554
Q ss_pred CCC---------CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 004470 670 KGF---------NLTTSSYNALIKGFLKRKKYLEARELFEEMRRGGLVADREIYYFFVDINFEEGNTEITLELCDAAIEC 740 (751)
Q Consensus 670 ~~~---------~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 740 (751)
..+ +.++.++..++......|+ +|.++++++.+.. |.++.+. ++++....|++++.+
T Consensus 240 ~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~-P~hp~i~-----------d~~~k~~~Fd~~~~k 305 (310)
T 3mv2_B 240 DYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLD-HEHAFIK-----------HHQEIDAKFDELVRK 305 (310)
T ss_dssp HHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTT-CCCHHHH-----------HHHHHHHHHHHHHHT
T ss_pred hcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhC-CCChHHH-----------HHHHHHHHHHHHHHH
Confidence 310 2256666566656666676 7778888887753 3333332 345566666666666
Q ss_pred C
Q 004470 741 Y 741 (751)
Q Consensus 741 ~ 741 (751)
+
T Consensus 306 y 306 (310)
T 3mv2_B 306 Y 306 (310)
T ss_dssp C
T ss_pred h
Confidence 5
No 87
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.15 E-value=3e-10 Score=113.48 Aligned_cols=232 Identities=15% Similarity=0.050 Sum_probs=157.0
Q ss_pred cCChHHHHHHHHhhhhC--------CCCChhHHHHHHHHHHhcCChHHHHHHHHHHHcCCCCCchhhhHHHHHHHHHhh-
Q 004470 108 RSDYRLVLDFFDWACLR--------REPILEARCIVVQISVAAKDLKTAHGLIHDFWAKPNLDASIAFTHFVERLIYTY- 178 (751)
Q Consensus 108 ~~~~~~al~~f~~~~~~--------~~~~~~~~~~~~~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~- 178 (751)
.++++.|+..|+.+... .+....++..++.++...|++++|...+.+++... .. ..
T Consensus 14 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~------------~~---~~~ 78 (283)
T 3edt_B 14 LVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIR------------EK---TLG 78 (283)
T ss_dssp CSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH------------HH---HTC
T ss_pred CCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHH------------HH---HcC
Confidence 45666666666665442 23456788899999999999999999999987531 00 00
Q ss_pred hcCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhC------CCccCHHhHHHHHHHHHhCCCCHHHHHHHHHhchhc--
Q 004470 179 KDWGSDPHVFDIFFQVLVEARKLNEARKLFEKLLNY------GLVISVDSCNLFLSRLSNTCDGLRMVVKSFTEFPEL-- 250 (751)
Q Consensus 179 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~------g~~p~~~~~~~ll~~l~~~~~~~~~a~~~~~~~~~~-- 250 (751)
..-+..+.++..++.+|...|++++|.+.|.++++. ...|+.......++.++...|++++|...|+++.+.
T Consensus 79 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 158 (283)
T 3edt_B 79 KDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYA 158 (283)
T ss_dssp TTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHH
T ss_pred CcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 011233467899999999999999999999999865 223555555566666767899999999999999776
Q ss_pred ----C-CCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc-------CCCC-CHHHHHHHHHHHHhcCCH------HHHH
Q 004470 251 ----G-ICWNTASYNIMIHCLCRFGKIKEAHLLLLQMELR-------GCSP-DVVSFSTIINGYCYLGEL------QRVL 311 (751)
Q Consensus 251 ----~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-------g~~p-~~~~~~~li~~~~~~g~~------~~A~ 311 (751)
+ .+....++..+...|.+.|++++|...|++..+. ...+ ....|..+...+...+.. ..+.
T Consensus 159 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (283)
T 3edt_B 159 TRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYG 238 (283)
T ss_dssp HHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC--------
T ss_pred HhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHH
Confidence 1 1224678889999999999999999999998653 1112 222333333333333332 2222
Q ss_pred HHHHHHHHCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 004470 312 KLIEEMQIKGLKPNPYTYNSVVRLLCKTSKVVEAETILREMMNQ 355 (751)
Q Consensus 312 ~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 355 (751)
..++.... ..+....++..+...|...|++++|...+++.++.
T Consensus 239 ~~~~~~~~-~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 281 (283)
T 3edt_B 239 SWYKACKV-DSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASRN 281 (283)
T ss_dssp ----CCCC-CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHhcCC-CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 22222111 11223567888999999999999999999988764
No 88
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.10 E-value=2.2e-09 Score=106.21 Aligned_cols=107 Identities=7% Similarity=-0.040 Sum_probs=72.4
Q ss_pred CCCChhHHHHHHHHHHhcCChHHHHHHHHHHHcCCCCCchhhhHHHHHHHHHhhhcCCCC---hhhHHHHHHHHHhcCCh
Q 004470 125 REPILEARCIVVQISVAAKDLKTAHGLIHDFWAKPNLDASIAFTHFVERLIYTYKDWGSD---PHVFDIFFQVLVEARKL 201 (751)
Q Consensus 125 ~~~~~~~~~~~~~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~---~~~~~~l~~~~~~~g~~ 201 (751)
.+.+...++..+..+...|++++|...+++++... |.+ +.++..++.+|.+.|++
T Consensus 11 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~----------------------p~~~~~~~a~~~lg~~~~~~~~~ 68 (261)
T 3qky_A 11 RHSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYG----------------------RTHEWAADAQFYLARAYYQNKEY 68 (261)
T ss_dssp CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC----------------------SCSTTHHHHHHHHHHHHHHTTCH
T ss_pred CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC----------------------CCCcchHHHHHHHHHHHHHhCcH
Confidence 34556777777888888888888888888877654 333 56777788888888888
Q ss_pred hHHHHHHHHHHhCCC-ccCHHhHHHHHHHHHhC--------CCCHHHHHHHHHhchhcCCC
Q 004470 202 NEARKLFEKLLNYGL-VISVDSCNLFLSRLSNT--------CDGLRMVVKSFTEFPELGIC 253 (751)
Q Consensus 202 ~~A~~~~~~~~~~g~-~p~~~~~~~ll~~l~~~--------~~~~~~a~~~~~~~~~~~~~ 253 (751)
++|+..|+++++..+ .|........++.++.. .|++++|...|+++++..+.
T Consensus 69 ~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~ 129 (261)
T 3qky_A 69 LLAASEYERFIQIYQIDPRVPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPN 129 (261)
T ss_dssp HHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHCCCCchhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcC
Confidence 888888888877632 22333333344444444 67777788877777776543
No 89
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.10 E-value=5.8e-09 Score=90.66 Aligned_cols=131 Identities=15% Similarity=0.188 Sum_probs=96.0
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 004470 608 TYNPLIKQHCLRNDMRTTAKIYKGMCAQGITPDGNTYNILLQGHCKARNMKEAWFLHKEMVQKGFNLTTSSYNALIKGFL 687 (751)
Q Consensus 608 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~ 687 (751)
.+..+...+...|++++|.++++++.+.+ +.+...+..++..+...|++++|...++++.+.++. +...+..++..+.
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~ 80 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR-SAEAWYNLGNAYY 80 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCC-chHHHHHHHHHHH
Confidence 34556666777777777777777776643 235666777777777788888888888887776543 5667777788888
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcC
Q 004470 688 KRKKYLEARELFEEMRRGGLVADREIYYFFVDINFEEGNTEITLELCDAAIECY 741 (751)
Q Consensus 688 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 741 (751)
..|++++|.+.++++.+.. +.+...+..++..+.+.|++++|.+.++++++..
T Consensus 81 ~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 133 (136)
T 2fo7_A 81 KQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD 133 (136)
T ss_dssp TTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHS
T ss_pred HhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHccHHHHHHHHHHHHccC
Confidence 8888888888888887753 4566777778888888888888888888887654
No 90
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=99.07 E-value=1.5e-08 Score=96.56 Aligned_cols=176 Identities=12% Similarity=0.060 Sum_probs=104.1
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHHcC----CHHHHHHHH
Q 004470 554 KAHELLRDMLDKGLQPSVVTFNVLMNGFCMSGMIEDGEKLLKWMLEKGLKPNAATYNPLIKQHCLRN----DMRTTAKIY 629 (751)
Q Consensus 554 ~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~g~~p~~~~~~~l~~~~~~~g----~~~~A~~~~ 629 (751)
+|.+.|++..+.| +...+..|...|...+++++|...|++..+.| +...+..|...|.. + +.++|.++|
T Consensus 4 eA~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~ 76 (212)
T 3rjv_A 4 EPGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLA 76 (212)
T ss_dssp CTTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHH
T ss_pred hHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHH
Confidence 3455555555543 55555556666666666666666666665543 44445555555544 4 666666666
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHh----cCCHHHHHHHHH
Q 004470 630 KGMCAQGITPDGNTYNILLQGHCK----ARNMKEAWFLHKEMVQKGFN-LTTSSYNALIKGFLK----RKKYLEARELFE 700 (751)
Q Consensus 630 ~~m~~~g~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~~~~-p~~~~~~~l~~~~~~----~g~~~~A~~~~~ 700 (751)
++..+.| +...+..|...|.. .+++++|++.|++..+.|.. .++..+..|...|.. .+++++|+.+|+
T Consensus 77 ~~A~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~ 153 (212)
T 3rjv_A 77 EKAVEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFK 153 (212)
T ss_dssp HHHHHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHH
T ss_pred HHHHHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHH
Confidence 6666543 45555566666655 56677777777776665421 015566666666666 566777777777
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHhc-C-----ChhHHHHHHHHHHHcC
Q 004470 701 EMRRGGLVADREIYYFFVDINFEE-G-----NTEITLELCDAAIECY 741 (751)
Q Consensus 701 ~~~~~~~~~~~~~~~~l~~~~~~~-g-----~~~~A~~~~~~~~~~~ 741 (751)
++.+. +.+...+..++..|... | +.++|+++++++.+.|
T Consensus 154 ~A~~~--~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g 198 (212)
T 3rjv_A 154 GSSSL--SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEG 198 (212)
T ss_dssp HHHHT--SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHT
T ss_pred HHHHc--CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcC
Confidence 77664 23344555666666543 2 6777777777776665
No 91
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.06 E-value=9.5e-08 Score=94.26 Aligned_cols=182 Identities=8% Similarity=-0.004 Sum_probs=111.1
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 004470 485 ANELLHEMCRKGLQLNIYTYNSIVNGLCKAGNILQAVKLMEDMEVAGF-HPDTFTYTTIMDAYCKSGEMVKAHELLRDML 563 (751)
Q Consensus 485 A~~l~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 563 (751)
|+..++++.+.+ .++..++..+...+...|++++|++++.+....+- .-+...+..++..+.+.|+.+.|.+.++.|.
T Consensus 85 a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~ 163 (310)
T 3mv2_B 85 NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYT 163 (310)
T ss_dssp CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 566666666554 34555555666777777777777777777665541 1345666667777777777777777777776
Q ss_pred hCCCCC-----CHHHHHHHHHHH--HhcC--ChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 004470 564 DKGLQP-----SVVTFNVLMNGF--CMSG--MIEDGEKLLKWMLEKGLKPNAATYNPLIKQHCLRNDMRTTAKIYKGMCA 634 (751)
Q Consensus 564 ~~~~~p-----~~~~~~~li~~~--~~~g--~~~~A~~l~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 634 (751)
+. .| +..+...|+.++ ...| +.++|..+|+++.+. .|+..+-..++.++...|++++|.+.++.+.+
T Consensus 164 ~~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~--~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~ 239 (310)
T 3mv2_B 164 NA--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT--FPTWKTQLGLLNLHLQQRNIAEAQGIVELLLS 239 (310)
T ss_dssp HH--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHS
T ss_pred hc--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--CCCcccHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 54 44 244455555552 2233 777777777777654 34433333444467777777777777776554
Q ss_pred CC-----C----CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 004470 635 QG-----I----TPDGNTYNILLQGHCKARNMKEAWFLHKEMVQKGFN 673 (751)
Q Consensus 635 ~g-----~----~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~ 673 (751)
.. . +.|+.++..+|......|+ +|.++++++.+..+.
T Consensus 240 ~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~ 285 (310)
T 3mv2_B 240 DYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDHE 285 (310)
T ss_dssp HHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCC
T ss_pred hcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCC
Confidence 20 0 2245566555555555665 777777777776443
No 92
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=99.06 E-value=4.3e-07 Score=98.06 Aligned_cols=124 Identities=11% Similarity=0.112 Sum_probs=70.7
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 004470 608 TYNPLIKQHCLRNDMRTTAKIYKGMCAQGITPDGNTYNILLQGHCK-ARNMKEAWFLHKEMVQKGFNLTTSSYNALIKGF 686 (751)
Q Consensus 608 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~-~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~ 686 (751)
.|...+....+.++.+.|..+|+++ .. ...+...|...+..-.. .++.+.|..+|+.+++..+. ++..+...++..
T Consensus 288 lw~~y~~~~~r~~~~~~AR~i~~~A-~~-~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~-~~~~~~~yid~e 364 (493)
T 2uy1_A 288 LRINHLNYVLKKRGLELFRKLFIEL-GN-EGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPD-STLLKEEFFLFL 364 (493)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHHH-TT-SCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHh-hC-CCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCC-CHHHHHHHHHHH
Confidence 3444555555566677777777776 21 11233333322222222 23577777777777765322 445555666666
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 004470 687 LKRKKYLEARELFEEMRRGGLVADREIYYFFVDINFEEGNTEITLELCDAAIE 739 (751)
Q Consensus 687 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 739 (751)
.+.|+.+.|..+|+++. .....|...+..-...|+.+.+.++++++++
T Consensus 365 ~~~~~~~~aR~l~er~~-----k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 365 LRIGDEENARALFKRLE-----KTSRMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp HHHTCHHHHHHHHHHSC-----CBHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHH-----HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 66777777777777751 2455566666555566777777777777665
No 93
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.05 E-value=2.5e-09 Score=107.38 Aligned_cols=169 Identities=11% Similarity=0.003 Sum_probs=124.2
Q ss_pred CCCChhHHHHHHHHHHhcCChHHHHHHHHHHHcCCCCCchhhhHHHHHHHHHhhhcCCCChhhHHHHHHHHHhcCChhHH
Q 004470 125 REPILEARCIVVQISVAAKDLKTAHGLIHDFWAKPNLDASIAFTHFVERLIYTYKDWGSDPHVFDIFFQVLVEARKLNEA 204 (751)
Q Consensus 125 ~~~~~~~~~~~~~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 204 (751)
.|.+...+..++..+...|++++|...++++++.. |.++.++..|+.+|.+.|++++|
T Consensus 113 lp~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~----------------------P~~~~a~~~la~~~~~~g~~~~A 170 (287)
T 3qou_A 113 LPREEELXAQQAMQLMQESNYTDALPLLXDAWQLS----------------------NQNGEIGLLLAETLIALNRSEDA 170 (287)
T ss_dssp SCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT----------------------TSCHHHHHHHHHHHHHTTCHHHH
T ss_pred cCCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhC----------------------CcchhHHHHHHHHHHHCCCHHHH
Confidence 45566777788888888888888888888887665 67777888888888888888888
Q ss_pred HHHHHHHHhCCCccCHHhHHHHHHHHHhCCCCHHHHHHHHHhchhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 004470 205 RKLFEKLLNYGLVISVDSCNLFLSRLSNTCDGLRMVVKSFTEFPELGICWNTASYNIMIHCLCRFGKIKEAHLLLLQMEL 284 (751)
Q Consensus 205 ~~~~~~~~~~g~~p~~~~~~~ll~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 284 (751)
...++++... .|+...............++.+.|...|+++.+..|. +...+..+...|...|++++|+..|+++.+
T Consensus 171 ~~~l~~~~~~--~p~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~P~-~~~~~~~la~~l~~~g~~~~A~~~l~~~l~ 247 (287)
T 3qou_A 171 EAVLXTIPLQ--DQDTRYQGLVAQIELLXQAADTPEIQQLQQQVAENPE-DAALATQLALQLHQVGRNEEALELLFGHLR 247 (287)
T ss_dssp HHHHTTSCGG--GCSHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHhCchh--hcchHHHHHHHHHHHHhhcccCccHHHHHHHHhcCCc-cHHHHHHHHHHHHHcccHHHHHHHHHHHHh
Confidence 8888888766 4555544444443333456667778888888777655 777788888888888888888888888776
Q ss_pred cCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 004470 285 RGCSP-DVVSFSTIINGYCYLGELQRVLKLIEEMQ 318 (751)
Q Consensus 285 ~g~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 318 (751)
..... +...+..++..+...|+.++|...+++..
T Consensus 248 ~~p~~~~~~a~~~l~~~~~~~g~~~~a~~~~r~al 282 (287)
T 3qou_A 248 XDLTAADGQTRXTFQEILAALGTGDALASXYRRQL 282 (287)
T ss_dssp HCTTGGGGHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred cccccccchHHHHHHHHHHHcCCCCcHHHHHHHHH
Confidence 54221 25567777777777888777777776654
No 94
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.05 E-value=2.7e-09 Score=107.46 Aligned_cols=92 Identities=11% Similarity=-0.070 Sum_probs=43.5
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHC----CCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCC-CC----HHHHHHH
Q 004470 508 VNGLCKAGNILQAVKLMEDMEVA----GFHPD-TFTYTTIMDAYCKSGEMVKAHELLRDMLDKGLQ-PS----VVTFNVL 577 (751)
Q Consensus 508 i~~~~~~g~~~~A~~~~~~~~~~----~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~-p~----~~~~~~l 577 (751)
...|...|++++|...+.+..+. |-+++ ..+|+.+...|.+.|++++|+..+++.++.... .+ ..+++.+
T Consensus 44 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~l 123 (292)
T 1qqe_A 44 ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFEL 123 (292)
T ss_dssp HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 44555666666666666655432 11111 345555555666666666666665555432100 01 2234444
Q ss_pred HHHHHhc-CChhHHHHHHHHHHH
Q 004470 578 MNGFCMS-GMIEDGEKLLKWMLE 599 (751)
Q Consensus 578 i~~~~~~-g~~~~A~~l~~~~~~ 599 (751)
...|... |++++|+..+++.++
T Consensus 124 g~~~~~~lg~~~~A~~~~~~Al~ 146 (292)
T 1qqe_A 124 GEILENDLHDYAKAIDCYELAGE 146 (292)
T ss_dssp HHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHhhcCHHHHHHHHHHHHH
Confidence 4444443 444444444444443
No 95
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.04 E-value=1.5e-09 Score=100.19 Aligned_cols=163 Identities=13% Similarity=0.021 Sum_probs=96.3
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHcCCCCCchhhhHHHHHHHHHhhhcCCCChhhHHHHHHHHHhcCChhHHHHHHH
Q 004470 130 EARCIVVQISVAAKDLKTAHGLIHDFWAKPNLDASIAFTHFVERLIYTYKDWGSDPHVFDIFFQVLVEARKLNEARKLFE 209 (751)
Q Consensus 130 ~~~~~~~~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 209 (751)
......+..+...|++++|...++++++.. |.++.++..++.+|.+.|++++|+..|+
T Consensus 7 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~----------------------P~~~~a~~~la~~~~~~g~~~~A~~~~~ 64 (176)
T 2r5s_A 7 EQLLKQVSELLQQGEHAQALNVIQTLSDEL----------------------QSRGDVKLAKADCLLETKQFELAQELLA 64 (176)
T ss_dssp TTHHHHHHHHHHTTCHHHHHHHHHTSCHHH----------------------HTSHHHHHHHHHHHHHTTCHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHC----------------------CCcHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 445566667777777777777777765433 5566677777777777777777777777
Q ss_pred HHHhCCCccCHHhHHHHHHHHH-hCCCCHHHHHHHHHhchhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 004470 210 KLLNYGLVISVDSCNLFLSRLS-NTCDGLRMVVKSFTEFPELGICWNTASYNIMIHCLCRFGKIKEAHLLLLQMELRGCS 288 (751)
Q Consensus 210 ~~~~~g~~p~~~~~~~ll~~l~-~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 288 (751)
++++. .|+.. +..+++.+. ...++...|...|+++.+..|. +...+..+...+.+.|++++|+..|+++.+....
T Consensus 65 ~a~~~--~p~~~-~~~~~~~~~~~~~~~~~~a~~~~~~al~~~P~-~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~ 140 (176)
T 2r5s_A 65 TIPLE--YQDNS-YKSLIAKLELHQQAAESPELKRLEQELAANPD-NFELACELAVQYNQVGRDEEALELLWNILKVNLG 140 (176)
T ss_dssp TCCGG--GCCHH-HHHHHHHHHHHHHHTSCHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTT
T ss_pred Hhhhc--cCChH-HHHHHHHHHHHhhcccchHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcc
Confidence 77655 33222 222222221 0111222356666666665444 5666666666666667777776666666654432
Q ss_pred C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 004470 289 P-DVVSFSTIINGYCYLGELQRVLKLIEEMQ 318 (751)
Q Consensus 289 p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 318 (751)
+ +...+..+...+...|+.++|...|++..
T Consensus 141 ~~~~~a~~~l~~~~~~~g~~~~A~~~y~~al 171 (176)
T 2r5s_A 141 AQDGEVKKTFMDILSALGQGNAIASKYRRQL 171 (176)
T ss_dssp TTTTHHHHHHHHHHHHHCSSCHHHHHHHHHH
T ss_pred cChHHHHHHHHHHHHHhCCCCcHHHHHHHHH
Confidence 2 24456666666666666666666666543
No 96
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.03 E-value=3.6e-09 Score=100.55 Aligned_cols=182 Identities=8% Similarity=-0.010 Sum_probs=104.5
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHHHHcCCCCCchhhhHHHHHHHHHhhhcCCCChhhHHHHHHHHHhcCChhHHHHH
Q 004470 128 ILEARCIVVQISVAAKDLKTAHGLIHDFWAKPNLDASIAFTHFVERLIYTYKDWGSDPHVFDIFFQVLVEARKLNEARKL 207 (751)
Q Consensus 128 ~~~~~~~~~~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 207 (751)
+.......+..+...|++++|...+.++++.. +..+...+... .-......+.....++.+|.+.|++++|+..
T Consensus 3 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~---p~~~~~~~~~~---~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~ 76 (208)
T 3urz_A 3 SVDEMLQKVSAAIEAGQNGQAVSYFRQTIALN---IDRTEMYYWTN---VDKNSEISSKLATELALAYKKNRNYDKAYLF 76 (208)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---HHHHHHHHHHH---SCTTSHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC---CCChHHHHHhh---hcchhhhhHHHHHHHHHHHHHCCCHHHHHHH
Confidence 34566777888889999999999999998764 11100000000 0000000112223378888888888888888
Q ss_pred HHHHHhCCCccCHHhHHHHHHHHHhCCCCHHHHHHHHHhchhcCCCcCHHHHHHHHHHHHhcCC--HHHHHHHHHHHHhc
Q 004470 208 FEKLLNYGLVISVDSCNLFLSRLSNTCDGLRMVVKSFTEFPELGICWNTASYNIMIHCLCRFGK--IKEAHLLLLQMELR 285 (751)
Q Consensus 208 ~~~~~~~g~~p~~~~~~~ll~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~--~~~A~~~~~~m~~~ 285 (751)
|+++++. .|+.......++.++...|++++|...|+++++..|. +..+|..+...|...|+ .+++...++....
T Consensus 77 ~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~- 152 (208)
T 3urz_A 77 YKELLQK--APNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEAD-NLAANIFLGNYYYLTAEQEKKKLETDYKKLSS- 152 (208)
T ss_dssp HHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHHHHHHHHHHC---C-
T ss_pred HHHHHHH--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhC-
Confidence 8888776 5655555555555555667777777777777776554 66677777766655543 3344444444432
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 004470 286 GCSPDVVSFSTIINGYCYLGELQRVLKLIEEMQIK 320 (751)
Q Consensus 286 g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 320 (751)
..|....+.....++...|++++|+..|++..+.
T Consensus 153 -~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l 186 (208)
T 3urz_A 153 -PTKMQYARYRDGLSKLFTTRYEKARNSLQKVILR 186 (208)
T ss_dssp -CCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTT
T ss_pred -CCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 1122222333444455566666666666666654
No 97
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.01 E-value=1e-08 Score=97.42 Aligned_cols=191 Identities=9% Similarity=-0.041 Sum_probs=110.0
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHhCCCccCHHhHHHHHHHHHhCCCCHHHHHHHHHhchhcCCCcCHHHHHHHHHH
Q 004470 186 HVFDIFFQVLVEARKLNEARKLFEKLLNYGLVISVDSCNLFLSRLSNTCDGLRMVVKSFTEFPELGICWNTASYNIMIHC 265 (751)
Q Consensus 186 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 265 (751)
..+...+..+.+.|++++|+..|+++++. .|+........+ .... .......++.+...
T Consensus 5 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~----~~~~---------------~~~~~~~~~~lg~~ 63 (208)
T 3urz_A 5 DEMLQKVSAAIEAGQNGQAVSYFRQTIAL--NIDRTEMYYWTN----VDKN---------------SEISSKLATELALA 63 (208)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CHHHHHHHHHHH----SCTT---------------SHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCChHHHHHhh----hcch---------------hhhhHHHHHHHHHH
Confidence 34556777889999999999999999987 566543332210 0000 00112233446666
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCC--HH
Q 004470 266 LCRFGKIKEAHLLLLQMELRGCSPDVVSFSTIINGYCYLGELQRVLKLIEEMQIKGLKPNPYTYNSVVRLLCKTSK--VV 343 (751)
Q Consensus 266 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~--~~ 343 (751)
|.+.|++++|+..|++..+... -+...|..+...+...|++++|++.|++..+.. +.+..++..+...|...|+ .+
T Consensus 64 ~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~~~~~~ 141 (208)
T 3urz_A 64 YKKNRNYDKAYLFYKELLQKAP-NNVDCLEACAEMQVCRGQEKDALRMYEKILQLE-ADNLAANIFLGNYYYLTAEQEKK 141 (208)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHHhHHHHH
Confidence 6777777777777777665432 356666667777777777777777777776653 2245566666666655443 23
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 004470 344 EAETILREMMNQGIVPDNVIYTTLIDGFCKMGNVAAAYRLFDEMRGLNIIPDLLTYTAII 403 (751)
Q Consensus 344 ~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li 403 (751)
.+...++.... ..|....+..+..++...|++++|...|++..+. .|+......+.
T Consensus 142 ~~~~~~~~~~~--~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l--~P~~~~~~~l~ 197 (208)
T 3urz_A 142 KLETDYKKLSS--PTKMQYARYRDGLSKLFTTRYEKARNSLQKVILR--FPSTEAQKTLD 197 (208)
T ss_dssp HHHHHHC---C--CCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTT--SCCHHHHHHHH
T ss_pred HHHHHHHHHhC--CCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCHHHHHHHH
Confidence 34444444432 1222233344455556667777777777777664 35544444433
No 98
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.01 E-value=1.3e-08 Score=100.49 Aligned_cols=189 Identities=10% Similarity=0.055 Sum_probs=109.1
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC---HHHHHHHHHHHHhcCChhHHHHHHHHHHHcCC-CCC-Hh
Q 004470 533 HPDTFTYTTIMDAYCKSGEMVKAHELLRDMLDKGLQPS---VVTFNVLMNGFCMSGMIEDGEKLLKWMLEKGL-KPN-AA 607 (751)
Q Consensus 533 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~---~~~~~~li~~~~~~g~~~~A~~l~~~~~~~g~-~p~-~~ 607 (751)
+.+...+..+...+.+.|++++|...|+++++.. +.+ ...+..+..+|.+.|++++|...|+++++... .|. ..
T Consensus 12 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~ 90 (261)
T 3qky_A 12 HSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYG-RTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQ 90 (261)
T ss_dssp CSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC-SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHH
T ss_pred CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHH
Confidence 3456667777777888888888888888887753 223 56777777888888888888888888877532 112 34
Q ss_pred hHHHHHHHHHH--------cCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH
Q 004470 608 TYNPLIKQHCL--------RNDMRTTAKIYKGMCAQGITPD-GNTYNILLQGHCKARNMKEAWFLHKEMVQKGFNLTTSS 678 (751)
Q Consensus 608 ~~~~l~~~~~~--------~g~~~~A~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~ 678 (751)
.+..+..++.. .|++++|.+.|+++++.. |+ ......+.. +...... -...
T Consensus 91 a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--p~~~~~~~a~~~--------------~~~~~~~----~~~~ 150 (261)
T 3qky_A 91 AEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRY--PNHELVDDATQK--------------IRELRAK----LARK 150 (261)
T ss_dssp HHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHC--TTCTTHHHHHHH--------------HHHHHHH----HHHH
T ss_pred HHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHC--cCchhHHHHHHH--------------HHHHHHH----HHHH
Confidence 55566666767 778888888888777642 32 222211100 0000000 0011
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-C-CHHHHHHHHHHHHhc----------CChhHHHHHHHHHHHcCC
Q 004470 679 YNALIKGFLKRKKYLEARELFEEMRRGGLV-A-DREIYYFFVDINFEE----------GNTEITLELCDAAIECYL 742 (751)
Q Consensus 679 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~-~~~~~~~l~~~~~~~----------g~~~~A~~~~~~~~~~~~ 742 (751)
+..++..|.+.|++++|+..|+++++.... + ....+..++.+|... |++++|++.++++++..+
T Consensus 151 ~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p 226 (261)
T 3qky_A 151 QYEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFP 226 (261)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCC
Confidence 344555555666666666666665553210 0 234455555555544 555666666666655543
No 99
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=99.00 E-value=9.5e-07 Score=95.34 Aligned_cols=125 Identities=8% Similarity=-0.014 Sum_probs=76.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh-cCChhHHHHHHHHHHHcCCCCCHhhHHHHHHH
Q 004470 537 FTYTTIMDAYCKSGEMVKAHELLRDMLDKGLQPSVVTFNVLMNGFCM-SGMIEDGEKLLKWMLEKGLKPNAATYNPLIKQ 615 (751)
Q Consensus 537 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~-~g~~~~A~~l~~~~~~~g~~p~~~~~~~l~~~ 615 (751)
..|...+....+.+..+.|..+|+++ .. ...+...|...+..-.. .++.+.|..+|+...+.. .-+...+...++.
T Consensus 287 ~lw~~y~~~~~r~~~~~~AR~i~~~A-~~-~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~-~~~~~~~~~yid~ 363 (493)
T 2uy1_A 287 LLRINHLNYVLKKRGLELFRKLFIEL-GN-EGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKH-PDSTLLKEEFFLF 363 (493)
T ss_dssp HHHHHHHHHHHHHHCHHHHHHHHHHH-TT-SCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHh-hC-CCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-CCCHHHHHHHHHH
Confidence 44555556555667777788887777 22 12233344322222222 235778888888777653 1133445556666
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004470 616 HCLRNDMRTTAKIYKGMCAQGITPDGNTYNILLQGHCKARNMKEAWFLHKEMVQ 669 (751)
Q Consensus 616 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 669 (751)
....|+.+.|..+|+++. .....|...+..-...|+.+.+.++++++.+
T Consensus 364 e~~~~~~~~aR~l~er~~-----k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 364 LLRIGDEENARALFKRLE-----KTSRMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp HHHHTCHHHHHHHHHHSC-----CBHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHH-----HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 667788888888887762 2456677777666677888888887777764
No 100
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=98.99 E-value=1.8e-08 Score=101.32 Aligned_cols=165 Identities=12% Similarity=0.013 Sum_probs=87.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhc----CCCC-CHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHCCCCC-C----
Q 004470 257 ASYNIMIHCLCRFGKIKEAHLLLLQMELR----GCSP-DVVSFSTIINGYCYL-GELQRVLKLIEEMQIKGLKP-N---- 325 (751)
Q Consensus 257 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p-~~~~~~~li~~~~~~-g~~~~A~~~~~~m~~~g~~p-~---- 325 (751)
.+|+.+...|.+.|++++|+..|++.... |-.. -..+|+.+...|... |++++|++.|++..+..... +
T Consensus 78 ~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~ 157 (292)
T 1qqe_A 78 NTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALS 157 (292)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHH
Confidence 34555555666666666666665554331 1000 023555666666664 66666666666665431100 0
Q ss_pred cccHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH------HHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCH---
Q 004470 326 PYTYNSVVRLLCKTSKVVEAETILREMMNQGIVPDN------VIYTTLIDGFCKMGNVAAAYRLFDEMRGLNIIPDL--- 396 (751)
Q Consensus 326 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~------~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~--- 396 (751)
..++..+...+.+.|++++|...|++..+....... ..|..+..++...|++++|...|++..+.. |+.
T Consensus 158 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~--p~~~~~ 235 (292)
T 1qqe_A 158 NKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSED--PNFADS 235 (292)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCCCCc
Confidence 234666666666777777777777666664322111 145556666666777777777776665532 221
Q ss_pred ---HHHHHHHHHHH--hcCCHHHHHHHHHHHH
Q 004470 397 ---LTYTAIICGFC--LTGKMVEAEKLFHEML 423 (751)
Q Consensus 397 ---~~~~~li~~~~--~~g~~~~A~~~~~~m~ 423 (751)
..+..++..+. ..+++++|+..|+.+.
T Consensus 236 ~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~ 267 (292)
T 1qqe_A 236 RESNFLKSLIDAVNEGDSEQLSEHCKEFDNFM 267 (292)
T ss_dssp --HHHHHHHHHHHHTTCTTTHHHHHHHHTTSS
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHhccCC
Confidence 12333444443 3456777777666554
No 101
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.98 E-value=5.9e-08 Score=93.37 Aligned_cols=192 Identities=7% Similarity=-0.033 Sum_probs=120.3
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCC-C-CHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCH--hhHH
Q 004470 535 DTFTYTTIMDAYCKSGEMVKAHELLRDMLDKGLQ-P-SVVTFNVLMNGFCMSGMIEDGEKLLKWMLEKGLKPNA--ATYN 610 (751)
Q Consensus 535 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~-p-~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~g~~p~~--~~~~ 610 (751)
+...+..+...+.+.|++++|...|+++++.... | ....+..+..+|.+.|++++|+..|+++++....... ..+.
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~ 82 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMY 82 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHH
Confidence 3445666677788889999999999988875321 1 1356777888888899999999999988876322111 1344
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH-------------
Q 004470 611 PLIKQHCLRNDMRTTAKIYKGMCAQGITPDGNTYNILLQGHCKARNMKEAWFLHKEMVQKGFNLTTS------------- 677 (751)
Q Consensus 611 ~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~------------- 677 (751)
.+..++...|.. .+ ..|..+...+...|++++|+..|+++++..+. +..
T Consensus 83 ~~g~~~~~~~~~-----~~------------~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~-~~~a~~a~~~l~~~~~ 144 (225)
T 2yhc_A 83 MRGLTNMALDDS-----AL------------QGFFGVDRSDRDPQQARAAFSDFSKLVRGYPN-SQYTTDATKRLVFLKD 144 (225)
T ss_dssp HHHHHHHHHHC-------------------------------CCHHHHHHHHHHHHHHTTCTT-CTTHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhhh-----hh------------hhhhccchhhcCcHHHHHHHHHHHHHHHHCcC-ChhHHHHHHHHHHHHH
Confidence 444444432100 00 00111112222334444555555444443222 111
Q ss_pred ----HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH---HHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC
Q 004470 678 ----SYNALIKGFLKRKKYLEARELFEEMRRGGLVADR---EIYYFFVDINFEEGNTEITLELCDAAIECYLVGK 745 (751)
Q Consensus 678 ----~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 745 (751)
....++..|.+.|++++|+..|+++++.. |.++ ..+..++.++.+.|++++|++.++.+...+....
T Consensus 145 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~~~ 218 (225)
T 2yhc_A 145 RLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDY-PDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSNTL 218 (225)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSCCC
T ss_pred HHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHC-cCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCch
Confidence 12356778899999999999999999853 2233 5688899999999999999999999988766543
No 102
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=98.98 E-value=1.8e-09 Score=122.28 Aligned_cols=151 Identities=10% Similarity=-0.018 Sum_probs=83.0
Q ss_pred CCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCccCHHhHHHHHHHHHhCCCCHHHHHHHHHhchhcCCCcCHHHHHH
Q 004470 182 GSDPHVFDIFFQVLVEARKLNEARKLFEKLLNYGLVISVDSCNLFLSRLSNTCDGLRMVVKSFTEFPELGICWNTASYNI 261 (751)
Q Consensus 182 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 261 (751)
|.++.++..++.+|.+.|++++|+..|+++++. .|+.......++.++...|++++|.+.|+++.+..+. +...|..
T Consensus 430 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~-~~~~~~~ 506 (681)
T 2pzi_A 430 SESVELPLMEVRALLDLGDVAKATRKLDDLAER--VGWRWRLVWYRAVAELLTGDYDSATKHFTEVLDTFPG-ELAPKLA 506 (681)
T ss_dssp TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--HCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTT-CSHHHHH
T ss_pred ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhcc--CcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHHH
Confidence 344455556666666666666666666666554 4444434444444444456666666666666655443 4555666
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHh
Q 004470 262 MIHCLCRFGKIKEAHLLLLQMELRGCSPDVVSFSTIINGYCYLGELQRVLKLIEEMQIKGLKPNPYTYNSVVRLLCK 338 (751)
Q Consensus 262 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~ 338 (751)
+..+|.+.|++++ ++.|++..+.+. .+...|..+...+.+.|++++|++.|++..+.+ +-+...+..+..++..
T Consensus 507 lg~~~~~~g~~~~-~~~~~~al~~~P-~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~~~~~~~~ 580 (681)
T 2pzi_A 507 LAATAELAGNTDE-HKFYQTVWSTND-GVISAAFGLARARSAEGDRVGAVRTLDEVPPTS-RHFTTARLTSAVTLLS 580 (681)
T ss_dssp HHHHHHHHTCCCT-TCHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHTSCTTS-TTHHHHHHHHHHHTC-
T ss_pred HHHHHHHcCChHH-HHHHHHHHHhCC-chHHHHHHHHHHHHHcCCHHHHHHHHHhhcccC-cccHHHHHHHHHHHHc
Confidence 6666666666666 666666555432 245556666666666666666666666655442 1123445555555444
No 103
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=98.98 E-value=4.7e-09 Score=118.86 Aligned_cols=166 Identities=9% Similarity=-0.077 Sum_probs=131.7
Q ss_pred ccCHHhHHHHHHHHHhCCCCHHHHHHHHHhchhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHH
Q 004470 217 VISVDSCNLFLSRLSNTCDGLRMVVKSFTEFPELGICWNTASYNIMIHCLCRFGKIKEAHLLLLQMELRGCSPDVVSFST 296 (751)
Q Consensus 217 ~p~~~~~~~ll~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ 296 (751)
.|+.......++..+...|++++|.+.|+++.+.++. +...|..+..+|.+.|++++|+..|++..+... -+...|..
T Consensus 429 ~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P-~~~~~~~~ 506 (681)
T 2pzi_A 429 FSESVELPLMEVRALLDLGDVAKATRKLDDLAERVGW-RWRLVWYRAVAELLTGDYDSATKHFTEVLDTFP-GELAPKLA 506 (681)
T ss_dssp CTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHST-TCSHHHHH
T ss_pred cccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcc-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CChHHHHH
Confidence 4555544555555555789999999999999988665 788999999999999999999999999887643 36778899
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcC
Q 004470 297 IINGYCYLGELQRVLKLIEEMQIKGLKPNPYTYNSVVRLLCKTSKVVEAETILREMMNQGIVPD-NVIYTTLIDGFCKMG 375 (751)
Q Consensus 297 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g 375 (751)
+...+.+.|++++ ++.|++..+.+ +.+...|..+..++.+.|++++|.+.|++..+. .|+ ..++..+...+...|
T Consensus 507 lg~~~~~~g~~~~-~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l--~P~~~~a~~~~~~~~~~~~ 582 (681)
T 2pzi_A 507 LAATAELAGNTDE-HKFYQTVWSTN-DGVISAAFGLARARSAEGDRVGAVRTLDEVPPT--SRHFTTARLTSAVTLLSGR 582 (681)
T ss_dssp HHHHHHHHTCCCT-TCHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHTSCTT--STTHHHHHHHHHHHTC---
T ss_pred HHHHHHHcCChHH-HHHHHHHHHhC-CchHHHHHHHHHHHHHcCCHHHHHHHHHhhccc--CcccHHHHHHHHHHHHccC
Confidence 9999999999999 99999998874 336788999999999999999999999998876 344 567777888776655
Q ss_pred C--------HHHHHHHHHHHH
Q 004470 376 N--------VAAAYRLFDEMR 388 (751)
Q Consensus 376 ~--------~~~A~~~~~~m~ 388 (751)
+ +++|.+.+..+.
T Consensus 583 ~~~~~~~~~~~~A~~~l~~~~ 603 (681)
T 2pzi_A 583 STSEVTEEQIRDAARRVEALP 603 (681)
T ss_dssp ----CCHHHHHHHHHHHHTSC
T ss_pred CCCCCCHHHHHHHHHHHhhCC
Confidence 4 556666655543
No 104
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=98.96 E-value=1.5e-09 Score=97.02 Aligned_cols=116 Identities=13% Similarity=0.016 Sum_probs=53.6
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHhCCCccCHHhHHHHHHHHHhCCCCHHHHHHHHHhchhcCCCcCHHHHHHHHHH
Q 004470 186 HVFDIFFQVLVEARKLNEARKLFEKLLNYGLVISVDSCNLFLSRLSNTCDGLRMVVKSFTEFPELGICWNTASYNIMIHC 265 (751)
Q Consensus 186 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 265 (751)
..+..|+.+|.+.|++++|++.|+++++. .|+.......++.++...|++++|...|+++++..+. +..+|..+...
T Consensus 32 ~~~~~la~~y~~~~~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~la~~ 108 (150)
T 4ga2_A 32 IKGFYFAKLYYEAKEYDLAKKYICTYINV--QERDPKAHRFLGLLYELEENTDKAVECYRRSVELNPT-QKDLVLKIAEL 108 (150)
T ss_dssp TTHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCC-CHHHHHHHHHH
Confidence 34444455555555555555555555444 3444433344444444445555555555555444333 44455555555
Q ss_pred HHhcCCHHHHHHH-HHHHHhcCCCCCHHHHHHHHHHHHhcC
Q 004470 266 LCRFGKIKEAHLL-LLQMELRGCSPDVVSFSTIINGYCYLG 305 (751)
Q Consensus 266 ~~~~g~~~~A~~~-~~~m~~~g~~p~~~~~~~li~~~~~~g 305 (751)
|.+.|++++|.+. +++..+..+ -+...|......+...|
T Consensus 109 ~~~~~~~~~aa~~~~~~al~l~P-~~~~~~~l~~~ll~~~G 148 (150)
T 4ga2_A 109 LCKNDVTDGRAKYWVERAAKLFP-GSPAVYKLKEQLLDCEG 148 (150)
T ss_dssp HHHHCSSSSHHHHHHHHHHHHST-TCHHHHHHHHHHHHTCC
T ss_pred HHHcCChHHHHHHHHHHHHHhCc-CCHHHHHHHHHHHHHhC
Confidence 5555555444433 344443321 23444444444444444
No 105
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=98.95 E-value=4.8e-08 Score=84.73 Aligned_cols=130 Identities=15% Similarity=0.150 Sum_probs=88.6
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 004470 573 TFNVLMNGFCMSGMIEDGEKLLKWMLEKGLKPNAATYNPLIKQHCLRNDMRTTAKIYKGMCAQGITPDGNTYNILLQGHC 652 (751)
Q Consensus 573 ~~~~li~~~~~~g~~~~A~~l~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~ 652 (751)
.|..+...+...|++++|..+++++.+... .+...+..+...+...|++++|.+.++++.+.+ +.+...+..++..+.
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~ 80 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELDP-RSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYY 80 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcCC-cchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CCchHHHHHHHHHHH
Confidence 345556666666777777777766665432 245556666666677777777777777776643 235666677777777
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 004470 653 KARNMKEAWFLHKEMVQKGFNLTTSSYNALIKGFLKRKKYLEARELFEEMRRG 705 (751)
Q Consensus 653 ~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 705 (751)
..|++++|.+.++++.+..+. +...+..++..+.+.|++++|...++++.+.
T Consensus 81 ~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 132 (136)
T 2fo7_A 81 KQGDYDEAIEYYQKALELDPR-SAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 132 (136)
T ss_dssp TTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHHccHHHHHHHHHHHHcc
Confidence 778888888888777776433 5667777778888888888888888877764
No 106
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.94 E-value=1.8e-07 Score=93.35 Aligned_cols=217 Identities=12% Similarity=0.082 Sum_probs=104.3
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH----HHc---CCHH
Q 004470 483 ETANELLHEMCRKGLQLNIYTYNSIVNGLCKAG--NILQAVKLMEDMEVAGFHPDTFTYTTIMDAY----CKS---GEMV 553 (751)
Q Consensus 483 ~~A~~l~~~m~~~g~~~~~~~~~~li~~~~~~g--~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~----~~~---g~~~ 553 (751)
++|+++++.++..++. +...|+.--..+...| +++++++.++.+...+ +-+..+|+.-...+ ... ++++
T Consensus 50 ~~aL~~t~~~L~~nP~-~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~n-Pk~y~aW~~R~~iL~~~~~~l~~~~~~~ 127 (306)
T 3dra_A 50 ERALHITELGINELAS-HYTIWIYRFNILKNLPNRNLYDELDWCEEIALDN-EKNYQIWNYRQLIIGQIMELNNNDFDPY 127 (306)
T ss_dssp HHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHC-TTCCHHHHHHHHHHHHHHHHTTTCCCTH
T ss_pred HHHHHHHHHHHHHCcH-HHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHC-cccHHHHHHHHHHHHHHHHhccccCCHH
Confidence 4666666666665433 4445555555555555 6666666666665543 33444444333333 333 4555
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChh--HHHHHHHHHHHcCCCCCHhhHHHHHHHHHHcCC------HHHH
Q 004470 554 KAHELLRDMLDKGLQPSVVTFNVLMNGFCMSGMIE--DGEKLLKWMLEKGLKPNAATYNPLIKQHCLRND------MRTT 625 (751)
Q Consensus 554 ~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~--~A~~l~~~~~~~g~~p~~~~~~~l~~~~~~~g~------~~~A 625 (751)
+++++++.+.+.. +.+..+|+.-...+.+.|.++ ++++.++++++.... |...|+.-...+...++ ++++
T Consensus 128 ~EL~~~~~~l~~~-pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~-N~sAW~~R~~ll~~l~~~~~~~~~~eE 205 (306)
T 3dra_A 128 REFDILEAMLSSD-PKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLK-NNSAWSHRFFLLFSKKHLATDNTIDEE 205 (306)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHSSGGGCCHHHHHHH
T ss_pred HHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccccchhhhHHHH
Confidence 6666666555543 335555555555555555555 555555555554322 44444444434433333 4445
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH-HHHHHHHHHHCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 004470 626 AKIYKGMCAQGITPDGNTYNILLQGHCKARNMKE-AWFLHKEMVQKG--FNLTTSSYNALIKGFLKRKKYLEARELFEEM 702 (751)
Q Consensus 626 ~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~-A~~~~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 702 (751)
++.+++++... +-|...|+.+...+.+.|+..+ +..+.+++.+.+ -..++..+..++.+|.+.|+.++|+++++.+
T Consensus 206 l~~~~~aI~~~-p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~l 284 (306)
T 3dra_A 206 LNYVKDKIVKC-PQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYDLL 284 (306)
T ss_dssp HHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHhC-CCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHH
Confidence 55555444432 1234444444444444444222 223333333221 0113444444555555555555555555554
Q ss_pred HH
Q 004470 703 RR 704 (751)
Q Consensus 703 ~~ 704 (751)
.+
T Consensus 285 ~~ 286 (306)
T 3dra_A 285 KS 286 (306)
T ss_dssp HH
T ss_pred Hh
Confidence 43
No 107
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.94 E-value=1.9e-08 Score=100.81 Aligned_cols=167 Identities=11% Similarity=-0.043 Sum_probs=126.7
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHH-H
Q 004470 568 QPSVVTFNVLMNGFCMSGMIEDGEKLLKWMLEKGLKPNAATYNPLIKQHCLRNDMRTTAKIYKGMCAQGITPDGNTYN-I 646 (751)
Q Consensus 568 ~p~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~-~ 646 (751)
+.+...+..+...+...|++++|...++++.+... -+...+..+...+...|++++|.+.++++... .|+..... .
T Consensus 114 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P-~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~--~p~~~~~~~~ 190 (287)
T 3qou_A 114 PREEELXAQQAMQLMQESNYTDALPLLXDAWQLSN-QNGEIGLLLAETLIALNRSEDAEAVLXTIPLQ--DQDTRYQGLV 190 (287)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTT-SCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG--GCSHHHHHHH
T ss_pred CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCC-cchhHHHHHHHHHHHCCCHHHHHHHHHhCchh--hcchHHHHHH
Confidence 44556666777777888888888888888877632 25567777888888888888888888887764 35544322 2
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhc
Q 004470 647 LLQGHCKARNMKEAWFLHKEMVQKGFNLTTSSYNALIKGFLKRKKYLEARELFEEMRRGGLVAD--REIYYFFVDINFEE 724 (751)
Q Consensus 647 li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~ 724 (751)
....+...++.++|+..++++++..+. +...+..++..|...|++++|+..++++++.. +.+ ...+..++..+...
T Consensus 191 ~~~~l~~~~~~~~a~~~l~~al~~~P~-~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~-p~~~~~~a~~~l~~~~~~~ 268 (287)
T 3qou_A 191 AQIELLXQAADTPEIQQLQQQVAENPE-DAALATQLALQLHQVGRNEEALELLFGHLRXD-LTAADGQTRXTFQEILAAL 268 (287)
T ss_dssp HHHHHHHHHTSCHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTGGGGHHHHHHHHHHHHH
T ss_pred HHHHHHhhcccCccHHHHHHHHhcCCc-cHHHHHHHHHHHHHcccHHHHHHHHHHHHhcc-cccccchHHHHHHHHHHHc
Confidence 233466777888888889988887655 78888899999999999999999999998864 222 67788888899999
Q ss_pred CChhHHHHHHHHHHH
Q 004470 725 GNTEITLELCDAAIE 739 (751)
Q Consensus 725 g~~~~A~~~~~~~~~ 739 (751)
|+.++|...+++.+.
T Consensus 269 g~~~~a~~~~r~al~ 283 (287)
T 3qou_A 269 GTGDALASXYRRQLY 283 (287)
T ss_dssp CTTCHHHHHHHHHHH
T ss_pred CCCCcHHHHHHHHHH
Confidence 999999998888765
No 108
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.93 E-value=1.6e-08 Score=93.06 Aligned_cols=163 Identities=10% Similarity=0.031 Sum_probs=103.7
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHhCCCccCHHhHHHHHHHHHhCCCCHHHHHHHHHhchhcCCCcCHHHHHHHHHH
Q 004470 186 HVFDIFFQVLVEARKLNEARKLFEKLLNYGLVISVDSCNLFLSRLSNTCDGLRMVVKSFTEFPELGICWNTASYNIMIHC 265 (751)
Q Consensus 186 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 265 (751)
..+..++..+.+.|++++|...|+++++. .|+.......++.++...|++++|...|+++....+ +...+..+...
T Consensus 7 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p--~~~~~~~~~~~ 82 (176)
T 2r5s_A 7 EQLLKQVSELLQQGEHAQALNVIQTLSDE--LQSRGDVKLAKADCLLETKQFELAQELLATIPLEYQ--DNSYKSLIAKL 82 (176)
T ss_dssp TTHHHHHHHHHHTTCHHHHHHHHHTSCHH--HHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC--CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC--ChHHHHHHHHH
Confidence 45667788888888888888888888776 677666666666666677888888888888877654 44333332222
Q ss_pred -HHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CcccHHHHHHHHHhcCCHH
Q 004470 266 -LCRFGKIKEAHLLLLQMELRGCSPDVVSFSTIINGYCYLGELQRVLKLIEEMQIKGLKP-NPYTYNSVVRLLCKTSKVV 343 (751)
Q Consensus 266 -~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~ 343 (751)
+.+.+...+|+..|++..+... .+...+..+...+...|++++|...|+++.+....+ +...+..+...+...|+.+
T Consensus 83 ~~~~~~~~~~a~~~~~~al~~~P-~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~ 161 (176)
T 2r5s_A 83 ELHQQAAESPELKRLEQELAANP-DNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGN 161 (176)
T ss_dssp HHHHHHTSCHHHHHHHHHHHHST-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSC
T ss_pred HHHhhcccchHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCC
Confidence 1222333345666666655432 245666666666677777777777777666653221 2345666666666666666
Q ss_pred HHHHHHHHHH
Q 004470 344 EAETILREMM 353 (751)
Q Consensus 344 ~A~~~~~~m~ 353 (751)
+|...|++.+
T Consensus 162 ~A~~~y~~al 171 (176)
T 2r5s_A 162 AIASKYRRQL 171 (176)
T ss_dssp HHHHHHHHHH
T ss_pred cHHHHHHHHH
Confidence 6666666544
No 109
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.92 E-value=5.3e-07 Score=89.92 Aligned_cols=223 Identities=10% Similarity=-0.003 Sum_probs=156.7
Q ss_pred hcCChhHHHHHHHHHHhCCCccCHHhHHHHHHHHHhCCC--CHHHHHHHHHhchhcCCCcCHHHHHHHHHHH----Hhc-
Q 004470 197 EARKLNEARKLFEKLLNYGLVISVDSCNLFLSRLSNTCD--GLRMVVKSFTEFPELGICWNTASYNIMIHCL----CRF- 269 (751)
Q Consensus 197 ~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~l~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~----~~~- 269 (751)
+....++|++++++++.. .|+..+.=..-+.+....| +++++++.++.++...+. +..+|+.-...+ .+.
T Consensus 45 ~~e~s~~aL~~t~~~L~~--nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk-~y~aW~~R~~iL~~~~~~l~ 121 (306)
T 3dra_A 45 AEEYSERALHITELGINE--LASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEK-NYQIWNYRQLIIGQIMELNN 121 (306)
T ss_dssp TTCCSHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTT-CCHHHHHHHHHHHHHHHHTT
T ss_pred cCCCCHHHHHHHHHHHHH--CcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcc-cHHHHHHHHHHHHHHHHhcc
Confidence 334456899999999887 5766654333444444566 889999999998888766 666677655555 455
Q ss_pred --CCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHH--HHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCC----
Q 004470 270 --GKIKEAHLLLLQMELRGCSPDVVSFSTIINGYCYLGELQ--RVLKLIEEMQIKGLKPNPYTYNSVVRLLCKTSK---- 341 (751)
Q Consensus 270 --g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~--~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~---- 341 (751)
+++++++++++.+.+... -|-.+|+.-...+.+.|+++ ++++.++++.+.... |..+|+.....+.+.|+
T Consensus 122 ~~~~~~~EL~~~~~~l~~~p-kny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~-N~sAW~~R~~ll~~l~~~~~~ 199 (306)
T 3dra_A 122 NDFDPYREFDILEAMLSSDP-KNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLK-NNSAWSHRFFLLFSKKHLATD 199 (306)
T ss_dssp TCCCTHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHSSGGGCCH
T ss_pred ccCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccccchh
Confidence 788889998888887653 57788887777777788887 888888888877543 66677766666666665
Q ss_pred --HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHH-HHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHH
Q 004470 342 --VVEAETILREMMNQGIVPDNVIYTTLIDGFCKMGNVAA-AYRLFDEMRGLN--IIPDLLTYTAIICGFCLTGKMVEAE 416 (751)
Q Consensus 342 --~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~-A~~~~~~m~~~~--~~p~~~~~~~li~~~~~~g~~~~A~ 416 (751)
++++++.++.++... +-|..+|+.+-..+.+.|+..+ +..+.+++.+.+ -..+...+..+...+.+.|+.++|+
T Consensus 200 ~~~~eEl~~~~~aI~~~-p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~ 278 (306)
T 3dra_A 200 NTIDEELNYVKDKIVKC-PQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESR 278 (306)
T ss_dssp HHHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHH
T ss_pred hhHHHHHHHHHHHHHhC-CCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHH
Confidence 777888887777764 4577788887777777777444 444555554432 1226667777777777777778888
Q ss_pred HHHHHHHHC
Q 004470 417 KLFHEMLGR 425 (751)
Q Consensus 417 ~~~~~m~~~ 425 (751)
++++.+.+.
T Consensus 279 ~~~~~l~~~ 287 (306)
T 3dra_A 279 TVYDLLKSK 287 (306)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHhc
Confidence 877777653
No 110
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.91 E-value=1.3e-07 Score=89.95 Aligned_cols=176 Identities=13% Similarity=0.004 Sum_probs=123.0
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC----ChhHHHHHH
Q 004470 519 QAVKLMEDMEVAGFHPDTFTYTTIMDAYCKSGEMVKAHELLRDMLDKGLQPSVVTFNVLMNGFCMSG----MIEDGEKLL 594 (751)
Q Consensus 519 ~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g----~~~~A~~l~ 594 (751)
+|++.|++..+. -++..+..+...|...+++++|.+.|++..+.| +...+..|...|.. + +.++|.+.|
T Consensus 4 eA~~~~~~aa~~---g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~ 76 (212)
T 3rjv_A 4 EPGSQYQQQAEA---GDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLA 76 (212)
T ss_dssp CTTHHHHHHHHT---TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHH
T ss_pred hHHHHHHHHHHC---CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHH
Confidence 455666666654 355666666777777777777777777777654 55666666666666 5 777777777
Q ss_pred HHHHHcCCCCCHhhHHHHHHHHHH----cCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHh----cCCHHHHHHHHH
Q 004470 595 KWMLEKGLKPNAATYNPLIKQHCL----RNDMRTTAKIYKGMCAQGIT-PDGNTYNILLQGHCK----ARNMKEAWFLHK 665 (751)
Q Consensus 595 ~~~~~~g~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~m~~~g~~-p~~~~~~~li~~~~~----~g~~~~A~~~~~ 665 (751)
++..+.| +...+..|...|.. .+++++|.++|++..+.|.. .+...+..|...|.. .+++++|+..|+
T Consensus 77 ~~A~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~ 153 (212)
T 3rjv_A 77 EKAVEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFK 153 (212)
T ss_dssp HHHHHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHH
T ss_pred HHHHHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHH
Confidence 7776654 55566666666665 67888888888888775421 016677777788877 778888888888
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHhc-C-----CHHHHHHHHHHHHHCC
Q 004470 666 EMVQKGFNLTTSSYNALIKGFLKR-K-----KYLEARELFEEMRRGG 706 (751)
Q Consensus 666 ~~~~~~~~p~~~~~~~l~~~~~~~-g-----~~~~A~~~~~~~~~~~ 706 (751)
+..+.+ .++..+..|...|... | ++++|..+|+++.+.|
T Consensus 154 ~A~~~~--~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g 198 (212)
T 3rjv_A 154 GSSSLS--RTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEG 198 (212)
T ss_dssp HHHHTS--CTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHT
T ss_pred HHHHcC--CCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcC
Confidence 888761 2455677777777653 3 7888888888888876
No 111
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=98.91 E-value=4.6e-09 Score=93.80 Aligned_cols=146 Identities=8% Similarity=-0.070 Sum_probs=120.5
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCCCccCHHhHHHHHHHHHhCCCCHHHHHHHHHhchhcCCCcCHHHHHHHHHHHHhcC
Q 004470 191 FFQVLVEARKLNEARKLFEKLLNYGLVISVDSCNLFLSRLSNTCDGLRMVVKSFTEFPELGICWNTASYNIMIHCLCRFG 270 (751)
Q Consensus 191 l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 270 (751)
|+.++...|++++|+..+.+.... .|+.......++.++...|++++|++.|+++++..+. +..+|..+..+|.+.|
T Consensus 3 LG~~~~~~~~~e~ai~~~~~a~~~--~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~~ 79 (150)
T 4ga2_A 3 LGSMRRSKADVERYIASVQGSTPS--PRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQER-DPKAHRFLGLLYELEE 79 (150)
T ss_dssp ----CCCHHHHHHHHHHHHHHSCS--HHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTT
T ss_pred hHHHHHHcChHHHHHHHHHHhccc--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcC
Confidence 566777889999999999999876 6777666677888887899999999999999999776 8999999999999999
Q ss_pred CHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHH-HHHHHHCCCCCCcccHHHHHHHHHhcCC
Q 004470 271 KIKEAHLLLLQMELRGCSPDVVSFSTIINGYCYLGELQRVLKL-IEEMQIKGLKPNPYTYNSVVRLLCKTSK 341 (751)
Q Consensus 271 ~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~-~~~m~~~g~~p~~~~~~~li~~~~~~g~ 341 (751)
++++|+..|++..+... -+..+|..+...|.+.|++++|.+. +++..+.. +-++.+|......+...|+
T Consensus 80 ~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~-P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 80 NTDKAVECYRRSVELNP-TQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLF-PGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp CHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTCCC
T ss_pred chHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhCc
Confidence 99999999999887643 3678899999999999999877665 58887763 3367778888888877775
No 112
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.90 E-value=3.6e-08 Score=109.57 Aligned_cols=164 Identities=12% Similarity=-0.012 Sum_probs=121.0
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHHcCCHHHHHHH
Q 004470 549 SGEMVKAHELLRDMLDKGLQPSVVTFNVLMNGFCMSGMIEDGEKLLKWMLEKGLKPNAATYNPLIKQHCLRNDMRTTAKI 628 (751)
Q Consensus 549 ~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~ 628 (751)
.|++++|.+.+++..+.. +.+...+..+...+...|++++|.+.+++..+... .+...+..+...|...|++++|.+.
T Consensus 2 ~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~ 79 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHR-PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHP-GHPEAVARLGRVRWTQQRHAEAAVL 79 (568)
T ss_dssp --------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTST-TCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 478899999999988763 45688899999999999999999999999988632 3577888899999999999999999
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc---CCHHHHHHHHHHHHHC
Q 004470 629 YKGMCAQGITPDGNTYNILLQGHCKARNMKEAWFLHKEMVQKGFNLTTSSYNALIKGFLKR---KKYLEARELFEEMRRG 705 (751)
Q Consensus 629 ~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~---g~~~~A~~~~~~~~~~ 705 (751)
+++.++.. +.+...+..+...|.+.|++++|.+.++++.+..+. +...+..++..+... |++++|.+.++++++.
T Consensus 80 ~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~ 157 (568)
T 2vsy_A 80 LQQASDAA-PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPE-EPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQ 157 (568)
T ss_dssp HHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHH
T ss_pred HHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhc
Confidence 99998853 336788889999999999999999999999987654 778889999999999 9999999999999886
Q ss_pred CCCCCHHHHHHH
Q 004470 706 GLVADREIYYFF 717 (751)
Q Consensus 706 ~~~~~~~~~~~l 717 (751)
+ +.+...+..+
T Consensus 158 ~-p~~~~~~~~l 168 (568)
T 2vsy_A 158 G-VGAVEPFAFL 168 (568)
T ss_dssp T-CCCSCHHHHT
T ss_pred C-CcccChHHHh
Confidence 5 3333344433
No 113
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.89 E-value=6.7e-08 Score=92.97 Aligned_cols=186 Identities=9% Similarity=-0.004 Sum_probs=119.5
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHHHHcCCCCCchhhhHHHHHHHHHhhhcCCCChhhHHHHHHHHHhcCChhHHHHHH
Q 004470 129 LEARCIVVQISVAAKDLKTAHGLIHDFWAKPNLDASIAFTHFVERLIYTYKDWGSDPHVFDIFFQVLVEARKLNEARKLF 208 (751)
Q Consensus 129 ~~~~~~~~~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 208 (751)
...++.++..+...|++++|...+++++.... ..+..+.++..++.+|.+.|++++|+..|
T Consensus 4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p-------------------~~~~~~~a~~~lg~~~~~~~~~~~A~~~~ 64 (225)
T 2yhc_A 4 PNEIYATAQQKLQDGNWRQAITQLEALDNRYP-------------------FGPYSQQVQLDLIYAYYKNADLPLAQAAI 64 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-------------------TSTTHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-------------------CChHHHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 45677788889999999999999999886530 11222457888999999999999999999
Q ss_pred HHHHhCCCccCHHh---HHHHHHHHHh------------------CCCCHHHHHHHHHhchhcCCCcCHHHHHHHHHHHH
Q 004470 209 EKLLNYGLVISVDS---CNLFLSRLSN------------------TCDGLRMVVKSFTEFPELGICWNTASYNIMIHCLC 267 (751)
Q Consensus 209 ~~~~~~g~~p~~~~---~~~ll~~l~~------------------~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 267 (751)
+++++. .|+... ....++.... ..|++++|...|+++++..|. +..++......-
T Consensus 65 ~~~l~~--~P~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~-~~~a~~a~~~l~- 140 (225)
T 2yhc_A 65 DRFIRL--NPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPN-SQYTTDATKRLV- 140 (225)
T ss_dssp HHHHHH--CTTCTTHHHHHHHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTT-CTTHHHHHHHHH-
T ss_pred HHHHHH--CcCCCcHHHHHHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcC-ChhHHHHHHHHH-
Confidence 999987 344321 2222332221 246677777777777766443 222222111100
Q ss_pred hcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCc----ccHHHHHHHHHhcCCHH
Q 004470 268 RFGKIKEAHLLLLQMELRGCSPDVVSFSTIINGYCYLGELQRVLKLIEEMQIKGLKPNP----YTYNSVVRLLCKTSKVV 343 (751)
Q Consensus 268 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~----~~~~~li~~~~~~g~~~ 343 (751)
.+...+. .....+...|.+.|++++|+..|+++.+.. |+. ..+..+..++.+.|+.+
T Consensus 141 ---------~~~~~~~--------~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~--p~~~~~~~a~~~l~~~~~~~g~~~ 201 (225)
T 2yhc_A 141 ---------FLKDRLA--------KYEYSVAEYYTERGAWVAVVNRVEGMLRDY--PDTQATRDALPLMENAYRQMQMNA 201 (225)
T ss_dssp ---------HHHHHHH--------HHHHHHHHHHHHHTCHHHHHHHHHHHHHHS--TTSHHHHHHHHHHHHHHHHTTCHH
T ss_pred ---------HHHHHHH--------HHHHHHHHHHHHcCcHHHHHHHHHHHHHHC--cCCCccHHHHHHHHHHHHHcCCcH
Confidence 0000000 111345567778888888888888887762 332 45777788888888888
Q ss_pred HHHHHHHHHHHCC
Q 004470 344 EAETILREMMNQG 356 (751)
Q Consensus 344 ~A~~~~~~m~~~g 356 (751)
+|.+.++.+...+
T Consensus 202 ~A~~~~~~l~~~~ 214 (225)
T 2yhc_A 202 QAEKVAKIIAANS 214 (225)
T ss_dssp HHHHHHHHHHHCC
T ss_pred HHHHHHHHHHhhC
Confidence 8888888777763
No 114
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.84 E-value=5.7e-07 Score=90.39 Aligned_cols=165 Identities=12% Similarity=-0.023 Sum_probs=117.0
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHcCC-CCCH----hhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC-CC----HHHHHH
Q 004470 577 LMNGFCMSGMIEDGEKLLKWMLEKGL-KPNA----ATYNPLIKQHCLRNDMRTTAKIYKGMCAQGIT-PD----GNTYNI 646 (751)
Q Consensus 577 li~~~~~~g~~~~A~~l~~~~~~~g~-~p~~----~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~-p~----~~~~~~ 646 (751)
.+..+...|++++|..++++..+... .|+. ..+..+...+...|++++|++.++++++.... ++ ..+++.
T Consensus 81 ~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~ 160 (293)
T 3u3w_A 81 QVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENA 160 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence 35566777888888888888776421 2221 12334556666777888888888888873222 22 336888
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHC-----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCCC-HHHHH
Q 004470 647 LLQGHCKARNMKEAWFLHKEMVQK-----GFNL-TTSSYNALIKGFLKRKKYLEARELFEEMRRG----GLVAD-REIYY 715 (751)
Q Consensus 647 li~~~~~~g~~~~A~~~~~~~~~~-----~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~~-~~~~~ 715 (751)
+...|...|++++|+..++++++. +..+ ...++..++..|.+.|++++|+..++++++. +..+. ...|.
T Consensus 161 lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~ 240 (293)
T 3u3w_A 161 IANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYY 240 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 888899999999999999888841 1111 2347788899999999999999999988762 22222 57788
Q ss_pred HHHHHHHhcCC-hhHHHHHHHHHHHcC
Q 004470 716 FFVDINFEEGN-TEITLELCDAAIECY 741 (751)
Q Consensus 716 ~l~~~~~~~g~-~~~A~~~~~~~~~~~ 741 (751)
.++.++.+.|+ +++|.+.++++++..
T Consensus 241 ~lg~~~~~~g~~~~~A~~~~~~Al~i~ 267 (293)
T 3u3w_A 241 QRGECLRKLEYEEAEIEDAYKKASFFF 267 (293)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHHHH
Confidence 88999999995 699999999987643
No 115
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.83 E-value=4.7e-08 Score=108.67 Aligned_cols=154 Identities=12% Similarity=0.029 Sum_probs=101.1
Q ss_pred cCChHHHHHHHHhhhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHcCCCCCchhhhHHHHHHHHHhhhcCCCChhh
Q 004470 108 RSDYRLVLDFFDWACLRREPILEARCIVVQISVAAKDLKTAHGLIHDFWAKPNLDASIAFTHFVERLIYTYKDWGSDPHV 187 (751)
Q Consensus 108 ~~~~~~al~~f~~~~~~~~~~~~~~~~~~~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 187 (751)
.++++.|+..|+.+....|.+..++..++.++...|++++|...++++++.. |.++.+
T Consensus 2 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~----------------------p~~~~~ 59 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALH----------------------PGHPEA 59 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS----------------------TTCHHH
T ss_pred CccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC----------------------CCCHHH
Confidence 3567778888888877777778888888888888888888888888887765 566677
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhCCCccCHHhHHHHHHHHHhCCCCHHHHHHHHHhchhcCCCcCHHHHHHHHHHHH
Q 004470 188 FDIFFQVLVEARKLNEARKLFEKLLNYGLVISVDSCNLFLSRLSNTCDGLRMVVKSFTEFPELGICWNTASYNIMIHCLC 267 (751)
Q Consensus 188 ~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 267 (751)
+..++.+|...|++++|.+.|+++++. .|+.......++.++...|++++|.+.|+++.+..+. +..++..+...+.
T Consensus 60 ~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~ 136 (568)
T 2vsy_A 60 VARLGRVRWTQQRHAEAAVLLQQASDA--APEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPE-EPYITAQLLNWRR 136 (568)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHH
Confidence 788888888888888888888888776 4555444445555555678888888888887777554 5677777777777
Q ss_pred hc---CCHHHHHHHHHHHHhcC
Q 004470 268 RF---GKIKEAHLLLLQMELRG 286 (751)
Q Consensus 268 ~~---g~~~~A~~~~~~m~~~g 286 (751)
+. |++++|.+.+++..+.+
T Consensus 137 ~~~~~g~~~~A~~~~~~al~~~ 158 (568)
T 2vsy_A 137 RLCDWRALDVLSAQVRAAVAQG 158 (568)
T ss_dssp HTTCCTTHHHHHHHHHHHHHHT
T ss_pred HhhccccHHHHHHHHHHHHhcC
Confidence 77 78888888877776654
No 116
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.82 E-value=4.6e-08 Score=99.22 Aligned_cols=130 Identities=12% Similarity=-0.018 Sum_probs=64.4
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHcCC---CCC--HhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC---C--CHH
Q 004470 573 TFNVLMNGFCMSGMIEDGEKLLKWMLEKGL---KPN--AATYNPLIKQHCLRNDMRTTAKIYKGMCAQGIT---P--DGN 642 (751)
Q Consensus 573 ~~~~li~~~~~~g~~~~A~~l~~~~~~~g~---~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~---p--~~~ 642 (751)
+|+.+...|...|++++|+..+++.++... .+. ..++..+...|.. |++++|++.|++.++.... + ...
T Consensus 78 ~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~ 156 (307)
T 2ifu_A 78 AFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAE 156 (307)
T ss_dssp HHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHH
Confidence 444455555555555555555555443200 011 2344455555555 6666666666555541100 0 033
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCC----CCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 004470 643 TYNILLQGHCKARNMKEAWFLHKEMVQKG----FNLT-TSSYNALIKGFLKRKKYLEARELFEEMR 703 (751)
Q Consensus 643 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~----~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 703 (751)
++..+...|.+.|++++|+..|+++++.. ..+. ...+..++.++...|++++|...|++.+
T Consensus 157 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al 222 (307)
T 2ifu_A 157 LIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY 222 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 45555666666666666666666655421 1111 1244455555555566666666666665
No 117
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.80 E-value=1.5e-07 Score=89.46 Aligned_cols=124 Identities=8% Similarity=-0.095 Sum_probs=58.6
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 004470 575 NVLMNGFCMSGMIEDGEKLLKWMLEKGLKPNAATYNPLIKQHCLRNDMRTTAKIYKGMCAQGITPDGNTYNILLQGHCKA 654 (751)
Q Consensus 575 ~~li~~~~~~g~~~~A~~l~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~ 654 (751)
..+...+...|++++|...+++.. .|+...+..+...|...|++++|.+.+++.++.. +.+...+..+...|...
T Consensus 10 ~~~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~~~ 84 (213)
T 1hh8_A 10 WNEGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQT 84 (213)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHc
Confidence 334444445555555555554432 3344445555555555555555555555554432 22344444455555555
Q ss_pred CCHHHHHHHHHHHHHCCCCCCH----------------HHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004470 655 RNMKEAWFLHKEMVQKGFNLTT----------------SSYNALIKGFLKRKKYLEARELFEEMRR 704 (751)
Q Consensus 655 g~~~~A~~~~~~~~~~~~~p~~----------------~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 704 (751)
|++++|+..++++++..+. +. ..+..++.+|.+.|++++|.+.++++++
T Consensus 85 ~~~~~A~~~~~~al~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 149 (213)
T 1hh8_A 85 EKYDLAIKDLKEALIQLRG-NQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATS 149 (213)
T ss_dssp TCHHHHHHHHHHHHHTTTT-CSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred ccHHHHHHHHHHHHHhCCC-ccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 5555555555555543322 11 3444444455555555555555555443
No 118
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.78 E-value=9.1e-08 Score=84.98 Aligned_cols=98 Identities=10% Similarity=0.057 Sum_probs=57.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 004470 642 NTYNILLQGHCKARNMKEAWFLHKEMVQKGFNLTTSSYNALIKGFLKRKKYLEARELFEEMRRGGLVADREIYYFFVDIN 721 (751)
Q Consensus 642 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 721 (751)
..+..+...+.+.|++++|+..|+++++..+. ++..|..++.+|...|++++|+..|+++++.. |.++..|..++.+|
T Consensus 37 ~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~-~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~-P~~~~~~~~lg~~~ 114 (151)
T 3gyz_A 37 DDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFY-NVDYIMGLAAIYQIKEQFQQAADLYAVAFALG-KNDYTPVFHTGQCQ 114 (151)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SSCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-CCCcHHHHHHHHHH
Confidence 34555555556666666666666666655443 55566666666666666666666666666543 33455555666666
Q ss_pred HhcCChhHHHHHHHHHHHcC
Q 004470 722 FEEGNTEITLELCDAAIECY 741 (751)
Q Consensus 722 ~~~g~~~~A~~~~~~~~~~~ 741 (751)
.+.|++++|++.|+++++..
T Consensus 115 ~~lg~~~eA~~~~~~al~l~ 134 (151)
T 3gyz_A 115 LRLKAPLKAKECFELVIQHS 134 (151)
T ss_dssp HHTTCHHHHHHHHHHHHHHC
T ss_pred HHcCCHHHHHHHHHHHHHhC
Confidence 66666666666666665554
No 119
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.78 E-value=4.6e-08 Score=99.20 Aligned_cols=200 Identities=11% Similarity=-0.013 Sum_probs=138.6
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHH
Q 004470 514 AGNILQAVKLMEDMEVAGFHPDTFTYTTIMDAYCK-SGEMVKAHELLRDMLDKGLQPSVVTFNVLMNGFCMSGMIEDGEK 592 (751)
Q Consensus 514 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~-~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~ 592 (751)
.|++++|.+++++..+.. +.. +.+ .+++++|...|.++ ...|...|++++|..
T Consensus 4 ~~~~~eA~~~~~~a~k~~-~~~----------~~~~~~~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~ 57 (307)
T 2ifu_A 4 AQKISEAHEHIAKAEKYL-KTS----------FMKWKPDYDSAASEYAKA---------------AVAFKNAKQLEQAKD 57 (307)
T ss_dssp HHHHHHHHHHHHHHHHHH-CCC----------SSSCSCCHHHHHHHHHHH---------------HHHHHHTTCHHHHHH
T ss_pred cchHHHHHHHHHHHHHHc-ccc----------ccCCCCCHHHHHHHHHHH---------------HHHHHHcCCHHHHHH
Confidence 355666666666655431 111 111 35666666666554 335566777777777
Q ss_pred HHHHHHHcCC---CC--CHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCC--C-CCC--HHHHHHHHHHHHhcCCHHHHHH
Q 004470 593 LLKWMLEKGL---KP--NAATYNPLIKQHCLRNDMRTTAKIYKGMCAQG--I-TPD--GNTYNILLQGHCKARNMKEAWF 662 (751)
Q Consensus 593 l~~~~~~~g~---~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g--~-~p~--~~~~~~li~~~~~~g~~~~A~~ 662 (751)
.+.+..+... .+ -..+|+.+...|...|++++|++.|++.++.- . .+. ..++..+...|.. |++++|+.
T Consensus 58 ~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~ 136 (307)
T 2ifu_A 58 AYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVH 136 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHH
Confidence 7776654311 11 13467788888999999999999999887621 1 121 4567888888988 99999999
Q ss_pred HHHHHHHCCCCC-----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCCC-HHHHHHHHHHHHhcCChhHHHH
Q 004470 663 LHKEMVQKGFNL-----TTSSYNALIKGFLKRKKYLEARELFEEMRRG----GLVAD-REIYYFFVDINFEEGNTEITLE 732 (751)
Q Consensus 663 ~~~~~~~~~~~p-----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~~-~~~~~~l~~~~~~~g~~~~A~~ 732 (751)
.|+++++..... ...++..++..|.+.|++++|+..|+++++. +..+. ...+..++.++...|++++|++
T Consensus 137 ~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~ 216 (307)
T 2ifu_A 137 LYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQK 216 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 999988742111 1467889999999999999999999999873 11111 2356677778888999999999
Q ss_pred HHHHHHHcC
Q 004470 733 LCDAAIECY 741 (751)
Q Consensus 733 ~~~~~~~~~ 741 (751)
.+++++ ..
T Consensus 217 ~~~~al-~~ 224 (307)
T 2ifu_A 217 CVRESY-SI 224 (307)
T ss_dssp HHHHHT-TS
T ss_pred HHHHHh-CC
Confidence 999998 44
No 120
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.74 E-value=2.1e-07 Score=80.05 Aligned_cols=109 Identities=9% Similarity=0.024 Sum_probs=62.8
Q ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 004470 607 ATYNPLIKQHCLRNDMRTTAKIYKGMCAQGITPDGNTYNILLQGHCKARNMKEAWFLHKEMVQKGFNLTTSSYNALIKGF 686 (751)
Q Consensus 607 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~ 686 (751)
..+......|.+.|++++|++.|++.++.. +.+...|..+..+|.+.|++++|+..++++++.++. +...|..++.+|
T Consensus 14 ~~~~~~G~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~ 91 (126)
T 4gco_A 14 QEEKNKGNEYFKKGDYPTAMRHYNEAVKRD-PENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSK-FIKGYIRKAACL 91 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhh-hhHHHHHHHHHH
Confidence 345555566666666666666666666532 224555666666666666666666666666665433 455666666666
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 004470 687 LKRKKYLEARELFEEMRRGGLVADREIYYFFV 718 (751)
Q Consensus 687 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 718 (751)
...|++++|++.|+++++.. |.+...+..+.
T Consensus 92 ~~~~~~~~A~~~~~~al~l~-P~~~~a~~~l~ 122 (126)
T 4gco_A 92 VAMREWSKAQRAYEDALQVD-PSNEEAREGVR 122 (126)
T ss_dssp HHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHHC-cCCHHHHHHHH
Confidence 66666666666666666543 33444444433
No 121
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.73 E-value=1.6e-06 Score=87.10 Aligned_cols=167 Identities=11% Similarity=-0.055 Sum_probs=106.8
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCH-----hhHHHHHHHHHHcCCHHHHHHHHHHHHHCCC---CCC--HHH
Q 004470 574 FNVLMNGFCMSGMIEDGEKLLKWMLEKGLKPNA-----ATYNPLIKQHCLRNDMRTTAKIYKGMCAQGI---TPD--GNT 643 (751)
Q Consensus 574 ~~~li~~~~~~g~~~~A~~l~~~~~~~g~~p~~-----~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~---~p~--~~~ 643 (751)
+...+..+...|++++|.+.+++..+....... ..+..+...+...|++++|.+.+++..+... .+. ..+
T Consensus 78 l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 157 (293)
T 2qfc_A 78 FKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYI 157 (293)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHH
Confidence 334455556666666666666666554221110 1223344455667778888887777765311 111 446
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH---CCCC-C--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC----CCC-CHH
Q 004470 644 YNILLQGHCKARNMKEAWFLHKEMVQ---KGFN-L--TTSSYNALIKGFLKRKKYLEARELFEEMRRGG----LVA-DRE 712 (751)
Q Consensus 644 ~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~-p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~----~~~-~~~ 712 (751)
|+.+...|...|++++|+..++++++ .... + ...++..++..|.+.|++++|+..++++++.. ... -..
T Consensus 158 ~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~ 237 (293)
T 2qfc_A 158 ENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQ 237 (293)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHHH
Confidence 77788888888888888888888773 2111 1 12577788888888888888888888877531 111 156
Q ss_pred HHHHHHHHHHhcCChhHH-HHHHHHHHHc
Q 004470 713 IYYFFVDINFEEGNTEIT-LELCDAAIEC 740 (751)
Q Consensus 713 ~~~~l~~~~~~~g~~~~A-~~~~~~~~~~ 740 (751)
.|..++.+|.+.|++++| ...++++++.
T Consensus 238 ~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~ 266 (293)
T 2qfc_A 238 LYYQRGECLRKLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCcHHHHHHHHHHHHHH
Confidence 777888888888888888 7778877653
No 122
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.73 E-value=3.1e-07 Score=78.92 Aligned_cols=105 Identities=11% Similarity=-0.033 Sum_probs=81.2
Q ss_pred CCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 004470 637 ITPD-GNTYNILLQGHCKARNMKEAWFLHKEMVQKGFNLTTSSYNALIKGFLKRKKYLEARELFEEMRRGGLVADREIYY 715 (751)
Q Consensus 637 ~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 715 (751)
+.|+ ...+...+..|.+.|++++|++.|+++++..+. +...|..++.+|.+.|++++|+..++++++.+ +.+...|.
T Consensus 8 inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~ 85 (126)
T 4gco_A 8 INPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPE-NAILYSNRAACLTKLMEFQRALDDCDTCIRLD-SKFIKGYI 85 (126)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHH
T ss_pred HCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHhhHHHhhccHHHHHHHHHHHHHhh-hhhhHHHH
Confidence 3443 345667778888888888888888888877654 77788888888888888888888888888764 55677788
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHcCCC
Q 004470 716 FFVDINFEEGNTEITLELCDAAIECYLV 743 (751)
Q Consensus 716 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 743 (751)
.++.++...|++++|++.++++++..+.
T Consensus 86 ~lg~~~~~~~~~~~A~~~~~~al~l~P~ 113 (126)
T 4gco_A 86 RKAACLVAMREWSKAQRAYEDALQVDPS 113 (126)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHCcC
Confidence 8888888888888888888888876544
No 123
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.71 E-value=4.6e-07 Score=81.93 Aligned_cols=130 Identities=8% Similarity=-0.006 Sum_probs=99.7
Q ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 004470 607 ATYNPLIKQHCLRNDMRTTAKIYKGMCAQGITPDGNTYNILLQGHCKARNMKEAWFLHKEMVQKGFNLTTSSYNALIKGF 686 (751)
Q Consensus 607 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~ 686 (751)
..+..+...+...|++++|...+++.++.. +.+...+..+...+...|++++|+..++++++..+. +...+..++.++
T Consensus 14 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~~a~~~ 91 (166)
T 1a17_A 14 EELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKK-YIKGYYRRAASN 91 (166)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHH
Confidence 345666677778888888888888887743 336777888888888889999999999888887544 677888888888
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH--HHHHhcCChhHHHHHHHHHHH
Q 004470 687 LKRKKYLEARELFEEMRRGGLVADREIYYFFV--DINFEEGNTEITLELCDAAIE 739 (751)
Q Consensus 687 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~--~~~~~~g~~~~A~~~~~~~~~ 739 (751)
...|++++|...++++++.. +.+...+..+. ..+.+.|++++|++.+++..+
T Consensus 92 ~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 145 (166)
T 1a17_A 92 MALGKFRAALRDYETVVKVK-PHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRS 145 (166)
T ss_dssp HHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHH
Confidence 89999999999999988764 44555554333 447788899999988887654
No 124
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.71 E-value=3.3e-07 Score=89.20 Aligned_cols=188 Identities=6% Similarity=-0.130 Sum_probs=113.0
Q ss_pred hcCChHHHHHHHHHHHcCCCCCchhhhHHHHHHHHHhhhcCCCChhhHHHH-------HHHHHhcCChhHHHHHHHHHHh
Q 004470 141 AAKDLKTAHGLIHDFWAKPNLDASIAFTHFVERLIYTYKDWGSDPHVFDIF-------FQVLVEARKLNEARKLFEKLLN 213 (751)
Q Consensus 141 ~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l-------~~~~~~~g~~~~A~~~~~~~~~ 213 (751)
..+++..|...+.+++..+ |..+.+|..+ ..++.+.++..+++..+.+.+.
T Consensus 18 ~~~d~~~A~~~F~~a~~~d----------------------P~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~ 75 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYD----------------------ESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQ 75 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHC----------------------TTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTT
T ss_pred cCCCHHHHHHHHHHHHHhC----------------------hhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhc
Confidence 4788999999999888765 6667778777 6888888888888888887765
Q ss_pred CCCccCHH---------------------hHHHHHHHHHhCCCCHHHHHHHHHhchhcCCCcCHHHHHHHHHHHHhcCCH
Q 004470 214 YGLVISVD---------------------SCNLFLSRLSNTCDGLRMVVKSFTEFPELGICWNTASYNIMIHCLCRFGKI 272 (751)
Q Consensus 214 ~g~~p~~~---------------------~~~~ll~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 272 (751)
. .|+.. ........++...|++++|.+.|+.+...++. ++ ....+...+.+.|++
T Consensus 76 l--~p~~l~a~~~~~g~y~~~~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~p~-~~-~~~~~a~l~~~~~r~ 151 (282)
T 4f3v_A 76 I--SMSTLNARIAIGGLYGDITYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAGSE-HL-VAWMKAVVYGAAERW 151 (282)
T ss_dssp C--CGGGGCCEEECCTTTCCCEEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTTCH-HH-HHHHHHHHHHHTTCH
T ss_pred C--ChhhhhhhhccCCcccccccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCc-hH-HHHHHHHHHHHcCCH
Confidence 3 33321 11222233333456677777777666665432 22 444555566666777
Q ss_pred HHHHHHHHHHHhcCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC--cccHHHHHHHHHhcCCHHHHHHH
Q 004470 273 KEAHLLLLQMELRGCSP--DVVSFSTIINGYCYLGELQRVLKLIEEMQIKGLKPN--PYTYNSVVRLLCKTSKVVEAETI 348 (751)
Q Consensus 273 ~~A~~~~~~m~~~g~~p--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~~~~~li~~~~~~g~~~~A~~~ 348 (751)
++|+..|+...... .| ....+..+..++.+.|++++|++.|++.......|. .........++.+.|+.++|..+
T Consensus 152 ~dA~~~l~~a~~~~-d~~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~ 230 (282)
T 4f3v_A 152 TDVIDQVKSAGKWP-DKFLAGAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVAL 230 (282)
T ss_dssp HHHHHHHTTGGGCS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHhhccC-CcccHHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHH
Confidence 77777666443321 01 022455556666666666666666666654322132 22344455566666666666666
Q ss_pred HHHHHHC
Q 004470 349 LREMMNQ 355 (751)
Q Consensus 349 ~~~m~~~ 355 (751)
|+++...
T Consensus 231 l~~a~a~ 237 (282)
T 4f3v_A 231 LEWLQTT 237 (282)
T ss_dssp HHHHHHH
T ss_pred HHHHHhc
Confidence 6666665
No 125
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.68 E-value=4.1e-06 Score=84.38 Aligned_cols=229 Identities=9% Similarity=0.008 Sum_probs=110.3
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc-C-CHHHHH
Q 004470 480 GELETANELLHEMCRKGLQLNIYTYNSIVNGLCKAG-NILQAVKLMEDMEVAGFHPDTFTYTTIMDAYCKS-G-EMVKAH 556 (751)
Q Consensus 480 g~~~~A~~l~~~m~~~g~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~-g-~~~~A~ 556 (751)
+..++|+++++.++..+.. +..+|+.--..+...| .+++++..++.+.... +-+..+|+.-...+.+. + ++++++
T Consensus 68 e~se~AL~lt~~~L~~nP~-~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n-PKny~aW~hR~wlL~~l~~~~~~~EL 145 (349)
T 3q7a_A 68 EKSERALELTEIIVRMNPA-HYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN-LKSYQVWHHRLLLLDRISPQDPVSEI 145 (349)
T ss_dssp CCSHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHHHCCSCCHHHH
T ss_pred CCCHHHHHHHHHHHHhCch-hHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHhcCCChHHHH
Confidence 3345566666666655433 4445555555555555 3666666666665544 44455555544444444 4 555555
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCC
Q 004470 557 ELLRDMLDKGLQPSVVTFNVLMNGFCMSGMIEDGEKLLKWMLEKGLKPNAATYNPLIKQHCLRNDMRTTAKIYKGMCAQG 636 (751)
Q Consensus 557 ~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 636 (751)
++++.+++.. +.+..+|+.-...+.+.|.++. .+ ...++++++.++++++..
T Consensus 146 ~~~~k~L~~d-pkNy~AW~~R~wvl~~l~~~~~--------------~~-------------~~~~~eELe~~~k~I~~d 197 (349)
T 3q7a_A 146 EYIHGSLLPD-PKNYHTWAYLHWLYSHFSTLGR--------------IS-------------EAQWGSELDWCNEMLRVD 197 (349)
T ss_dssp HHHHHHTSSC-TTCHHHHHHHHHHHHHHHHTTC--------------CC-------------HHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHhC-CCCHHHHHHHHHHHHHhccccc--------------cc-------------hhhHHHHHHHHHHHHHhC
Confidence 5555555543 3345555544444444333330 00 000124555555555432
Q ss_pred CCCCHHHHHHHHHHHHhcCC-------HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH-----------------
Q 004470 637 ITPDGNTYNILLQGHCKARN-------MKEAWFLHKEMVQKGFNLTTSSYNALIKGFLKRKKY----------------- 692 (751)
Q Consensus 637 ~~p~~~~~~~li~~~~~~g~-------~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~----------------- 692 (751)
+-|...|+.....+.+.++ ++++++.+++++...+. |...|+-+-..+.+.|+.
T Consensus 198 -p~N~SAW~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~~P~-n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~ 275 (349)
T 3q7a_A 198 -GRNNSAWGWRWYLRVSRPGAETSSRSLQDELIYILKSIHLIPH-NVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLN 275 (349)
T ss_dssp -TTCHHHHHHHHHHHTTSTTCCCCHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC----
T ss_pred -CCCHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhcCCCccccccccccccccccc
Confidence 1244444444444444443 45566666666655444 555555555555544432
Q ss_pred ---HHHHHHHHHHHHCC-----CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 004470 693 ---LEARELFEEMRRGG-----LVADREIYYFFVDINFEEGNTEITLELCDAAIEC 740 (751)
Q Consensus 693 ---~~A~~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 740 (751)
.+..+....+...+ -.+.+.....+++.|.+.|+.++|.+.++.+.++
T Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~~ 331 (349)
T 3q7a_A 276 PDIETVEAFGFPMPSDPLPEDTPLPVPLALEYLADSFIEQNRVDDAAKVFEKLSSE 331 (349)
T ss_dssp ----------CCCCC-CCCSSCCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred ccchhHHHHHHHHHhcccccccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Confidence 22222222222111 0245555666666666666666676666666543
No 126
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.68 E-value=1.8e-07 Score=91.08 Aligned_cols=206 Identities=10% Similarity=-0.087 Sum_probs=150.9
Q ss_pred hcCChHHHHHHHHhhhhCCCCChhHHHHH-------HHHHHhcCChHHHHHHHHHHHcCCCCCchhhhHHHHHHHHHhh-
Q 004470 107 IRSDYRLVLDFFDWACLRREPILEARCIV-------VQISVAAKDLKTAHGLIHDFWAKPNLDASIAFTHFVERLIYTY- 178 (751)
Q Consensus 107 ~~~~~~~al~~f~~~~~~~~~~~~~~~~~-------~~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~- 178 (751)
...|+..|++.|..+....|...+++.-+ ..+|.+.++..++...+.+.+..........+ . +...|
T Consensus 18 ~~~d~~~A~~~F~~a~~~dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~----~-~~g~y~ 92 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYDESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARI----A-IGGLYG 92 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEE----E-CCTTTC
T ss_pred cCCCHHHHHHHHHHHHHhChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhh----c-cCCccc
Confidence 57899999999999999999999999888 67777777777777777777664311000000 0 00000
Q ss_pred -hcCC--CChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCccCHHhHHHHHHHHHhCCCCHHHHHHHHHhchhcCCCcC
Q 004470 179 -KDWG--SDPHVFDIFFQVLVEARKLNEARKLFEKLLNYGLVISVDSCNLFLSRLSNTCDGLRMVVKSFTEFPELGICWN 255 (751)
Q Consensus 179 -~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~l~~~~~~~~~a~~~~~~~~~~~~~~~ 255 (751)
-.++ ....+...++..|...|++++|.++|+.+... .|+.. ....++.++...+++++|+..|+...... .|.
T Consensus 93 ~~~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~--~p~~~-~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~ 168 (282)
T 4f3v_A 93 DITYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVA--GSEHL-VAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKF 168 (282)
T ss_dssp CCEEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCT--TCHHH-HHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHH
T ss_pred ccccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCchH-HHHHHHHHHHHcCCHHHHHHHHHHhhccC-Ccc
Confidence 0001 11235667899999999999999999999876 46555 55556666668899999999999776652 221
Q ss_pred --HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 004470 256 --TASYNIMIHCLCRFGKIKEAHLLLLQMELRGCSPD--VVSFSTIINGYCYLGELQRVLKLIEEMQIKG 321 (751)
Q Consensus 256 --~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 321 (751)
...+..+..++.+.|++++|+..|++.......|. .........++.+.|+.++|...|+++....
T Consensus 169 ~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~ 238 (282)
T 4f3v_A 169 LAGAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTH 238 (282)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS
T ss_pred cHHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 34788889999999999999999999875432243 3466777888899999999999999999873
No 127
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.67 E-value=3.1e-06 Score=84.92 Aligned_cols=163 Identities=9% Similarity=-0.019 Sum_probs=120.5
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhCCC-CCCH----HHHHHHHHHHHhcCChhHHHHHHHHHHHcCCC-CC----HhhHHH
Q 004470 542 IMDAYCKSGEMVKAHELLRDMLDKGL-QPSV----VTFNVLMNGFCMSGMIEDGEKLLKWMLEKGLK-PN----AATYNP 611 (751)
Q Consensus 542 li~~~~~~g~~~~A~~~~~~~~~~~~-~p~~----~~~~~li~~~~~~g~~~~A~~l~~~~~~~g~~-p~----~~~~~~ 611 (751)
.+..+...|++++|..++++..+... .|+. ..+..+...+...|++++|...++++.+.... ++ ..+++.
T Consensus 81 ~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~ 160 (293)
T 3u3w_A 81 QVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENA 160 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence 45677888889999988888876421 1221 12334666666778899999999988874222 22 236888
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHH----C-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCCC-HHHHH
Q 004470 612 LIKQHCLRNDMRTTAKIYKGMCA----Q-GITPD-GNTYNILLQGHCKARNMKEAWFLHKEMVQK----GFNLT-TSSYN 680 (751)
Q Consensus 612 l~~~~~~~g~~~~A~~~~~~m~~----~-g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----~~~p~-~~~~~ 680 (751)
+...|...|++++|.+.++++++ . +..+. ..++..+...|.+.|++++|+..++++++. +..+. ..+|.
T Consensus 161 lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~ 240 (293)
T 3u3w_A 161 IANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYY 240 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 88889999999999999998884 1 11222 346888999999999999999999988763 22222 67899
Q ss_pred HHHHHHHhcC-CHHHHHHHHHHHHH
Q 004470 681 ALIKGFLKRK-KYLEARELFEEMRR 704 (751)
Q Consensus 681 ~l~~~~~~~g-~~~~A~~~~~~~~~ 704 (751)
.++.+|.+.| ++++|.+.++++++
T Consensus 241 ~lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 241 QRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 9999999999 57999999999875
No 128
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.67 E-value=8.5e-08 Score=85.20 Aligned_cols=97 Identities=8% Similarity=-0.043 Sum_probs=60.7
Q ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 004470 607 ATYNPLIKQHCLRNDMRTTAKIYKGMCAQGITPDGNTYNILLQGHCKARNMKEAWFLHKEMVQKGFNLTTSSYNALIKGF 686 (751)
Q Consensus 607 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~ 686 (751)
..+..+...+...|++++|...|++.+... +.+...|..+..+|...|++++|+..|+++++.++. ++..+..++.+|
T Consensus 22 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~-~~~~~~~lg~~~ 99 (148)
T 2vgx_A 22 EQLYSLAFNQYQSGXYEDAHXVFQALCVLD-HYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIX-EPRFPFHAAECL 99 (148)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CchHHHHHHHHH
Confidence 345555566666666666666666666542 225556666666666666666666666666665443 555666666666
Q ss_pred HhcCCHHHHHHHHHHHHHC
Q 004470 687 LKRKKYLEARELFEEMRRG 705 (751)
Q Consensus 687 ~~~g~~~~A~~~~~~~~~~ 705 (751)
...|++++|+..|+++++.
T Consensus 100 ~~~g~~~~A~~~~~~al~~ 118 (148)
T 2vgx_A 100 LQXGELAEAESGLFLAQEL 118 (148)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHH
Confidence 6666666666666666653
No 129
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.64 E-value=7.3e-06 Score=82.54 Aligned_cols=182 Identities=12% Similarity=0.029 Sum_probs=120.6
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhCCCccCHHhHHHHHHHHHhCCC-CHHHHHHHHHhchhcCCCcCHHHHHHHHHHHH
Q 004470 189 DIFFQVLVEARKLNEARKLFEKLLNYGLVISVDSCNLFLSRLSNTCD-GLRMVVKSFTEFPELGICWNTASYNIMIHCLC 267 (751)
Q Consensus 189 ~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~l~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 267 (751)
+.+-..+.+.+..++|++++++++.. .|+..+.=..-+.+....| .++++++.++.+....+. +..+|+.-...+.
T Consensus 58 ~~~r~~~~~~e~se~AL~lt~~~L~~--nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPK-ny~aW~hR~wlL~ 134 (349)
T 3q7a_A 58 DYFRAIAAKEEKSERALELTEIIVRM--NPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLK-SYQVWHHRLLLLD 134 (349)
T ss_dssp HHHHHHHHTTCCSHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCC-CHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHh--CchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHH
Confidence 33334444455667888888888877 5666544222333333455 588888888888887666 7777887777776
Q ss_pred hc-C-CHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHH--------HHHHHHHHHHHCCCCCCcccHHHHHHHHH
Q 004470 268 RF-G-KIKEAHLLLLQMELRGCSPDVVSFSTIINGYCYLGELQ--------RVLKLIEEMQIKGLKPNPYTYNSVVRLLC 337 (751)
Q Consensus 268 ~~-g-~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~--------~A~~~~~~m~~~g~~p~~~~~~~li~~~~ 337 (751)
+. + ++++++++++.+.+... .|-.+|+.-...+.+.|.++ ++++.++++.+..+. |..+|+.....+.
T Consensus 135 ~l~~~~~~~EL~~~~k~L~~dp-kNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~-N~SAW~~R~~lL~ 212 (349)
T 3q7a_A 135 RISPQDPVSEIEYIHGSLLPDP-KNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGR-NNSAWGWRWYLRV 212 (349)
T ss_dssp HHCCSCCHHHHHHHHHHTSSCT-TCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHT
T ss_pred HhcCCChHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHH
Confidence 66 6 78888888888887643 47777776665555555555 777777777776433 6666776666666
Q ss_pred hcCC-------HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC
Q 004470 338 KTSK-------VVEAETILREMMNQGIVPDNVIYTTLIDGFCKMGN 376 (751)
Q Consensus 338 ~~g~-------~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~ 376 (751)
+.++ ++++++.+++++... +-|..+|+.+-..+.+.|+
T Consensus 213 ~l~~~~~~~~~~~eELe~~~~aI~~~-P~n~SaW~Ylr~Ll~~~~~ 257 (349)
T 3q7a_A 213 SRPGAETSSRSLQDELIYILKSIHLI-PHNVSAWNYLRGFLKHFSL 257 (349)
T ss_dssp TSTTCCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred hccccccchHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCC
Confidence 6665 567777777766653 4466677766666666554
No 130
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.64 E-value=1.5e-06 Score=82.37 Aligned_cols=132 Identities=10% Similarity=-0.078 Sum_probs=110.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHH
Q 004470 536 TFTYTTIMDAYCKSGEMVKAHELLRDMLDKGLQPSVVTFNVLMNGFCMSGMIEDGEKLLKWMLEKGLKPNAATYNPLIKQ 615 (751)
Q Consensus 536 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~g~~p~~~~~~~l~~~ 615 (751)
...+..+...+...|++++|...|++.. .|+...+..+...|...|++++|...+++..+.. +.+...+..+...
T Consensus 6 ~~~~~~~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~ 80 (213)
T 1hh8_A 6 AISLWNEGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGML 80 (213)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHH
Confidence 3455667788889999999999998774 5688899999999999999999999999998864 3367788889999
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCCCH----------------HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 004470 616 HCLRNDMRTTAKIYKGMCAQGITPDG----------------NTYNILLQGHCKARNMKEAWFLHKEMVQKGFN 673 (751)
Q Consensus 616 ~~~~g~~~~A~~~~~~m~~~g~~p~~----------------~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~ 673 (751)
|...|++++|.+.|++..+... .+. ..+..+...|.+.|++++|...++++++..+.
T Consensus 81 ~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~ 153 (213)
T 1hh8_A 81 YYQTEKYDLAIKDLKEALIQLR-GNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSE 153 (213)
T ss_dssp HHHTTCHHHHHHHHHHHHHTTT-TCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCS
T ss_pred HHHcccHHHHHHHHHHHHHhCC-CccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCcc
Confidence 9999999999999999988532 222 67888899999999999999999999987544
No 131
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.63 E-value=9.8e-08 Score=84.76 Aligned_cols=102 Identities=4% Similarity=-0.093 Sum_probs=53.1
Q ss_pred CCCChhHHHHHHHHHHhcCChHHHHHHHHHHHcCCCCCchhhhHHHHHHHHHhhhcCCCChhhHHHHHHHHHhcCChhHH
Q 004470 125 REPILEARCIVVQISVAAKDLKTAHGLIHDFWAKPNLDASIAFTHFVERLIYTYKDWGSDPHVFDIFFQVLVEARKLNEA 204 (751)
Q Consensus 125 ~~~~~~~~~~~~~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 204 (751)
.|.+..+++.++..+...|++++|...+++++..+ |.++.+|..|+.+|...|++++|
T Consensus 32 ~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~----------------------P~~~~~~~~lg~~~~~~g~~~~A 89 (151)
T 3gyz_A 32 PDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYD----------------------FYNVDYIMGLAAIYQIKEQFQQA 89 (151)
T ss_dssp CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----------------------TTCHHHHHHHHHHHHHTTCHHHH
T ss_pred CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC----------------------CCCHHHHHHHHHHHHHHccHHHH
Confidence 34444555555555555666666666665555443 45555555566666666666666
Q ss_pred HHHHHHHHhCCCccCHHhHHHHHHHHHhCCCCHHHHHHHHHhchhc
Q 004470 205 RKLFEKLLNYGLVISVDSCNLFLSRLSNTCDGLRMVVKSFTEFPEL 250 (751)
Q Consensus 205 ~~~~~~~~~~g~~p~~~~~~~ll~~l~~~~~~~~~a~~~~~~~~~~ 250 (751)
+..|+++++. .|+.......++.++...|++++|...|+++.+.
T Consensus 90 i~~~~~al~l--~P~~~~~~~~lg~~~~~lg~~~eA~~~~~~al~l 133 (151)
T 3gyz_A 90 ADLYAVAFAL--GKNDYTPVFHTGQCQLRLKAPLKAKECFELVIQH 133 (151)
T ss_dssp HHHHHHHHHH--SSSCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhh--CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 6666655554 3333333333333333445555555555555444
No 132
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.62 E-value=1.4e-06 Score=74.04 Aligned_cols=116 Identities=14% Similarity=0.123 Sum_probs=79.3
Q ss_pred HhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 004470 606 AATYNPLIKQHCLRNDMRTTAKIYKGMCAQGITPDGNTYNILLQGHCKARNMKEAWFLHKEMVQKGFNLTTSSYNALIKG 685 (751)
Q Consensus 606 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~ 685 (751)
...+..+...+...|++++|.+.++++.+.. +.+...+..++..+...|++++|...++++.+..+. +..++..++..
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~ 86 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN-NAEAWYNLGNA 86 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCc-cHHHHHHHHHH
Confidence 3455666666777777777777777776642 235666777777777777888888777777776433 66677777777
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 004470 686 FLKRKKYLEARELFEEMRRGGLVADREIYYFFVDINFEE 724 (751)
Q Consensus 686 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 724 (751)
+...|++++|...++++.+.. +.+...+..++..+.+.
T Consensus 87 ~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~ 124 (125)
T 1na0_A 87 YYKQGDYDEAIEYYQKALELD-PNNAEAKQNLGNAKQKQ 124 (125)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHhc
Confidence 888888888888888777753 44566666666555543
No 133
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.61 E-value=6.3e-07 Score=91.91 Aligned_cols=132 Identities=10% Similarity=-0.061 Sum_probs=86.2
Q ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC--------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 004470 607 ATYNPLIKQHCLRNDMRTTAKIYKGMCAQGITPD--------------GNTYNILLQGHCKARNMKEAWFLHKEMVQKGF 672 (751)
Q Consensus 607 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~--------------~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~ 672 (751)
..+..+...+...|++++|.+.|++.++...... ...|..+..+|.+.|++++|+..++++++..+
T Consensus 148 ~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p 227 (336)
T 1p5q_A 148 TIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELDS 227 (336)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 3444445555555555555555555554321110 36677777777777777777777777777654
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHH-HHHHHHHHHc
Q 004470 673 NLTTSSYNALIKGFLKRKKYLEARELFEEMRRGGLVADREIYYFFVDINFEEGNTEIT-LELCDAAIEC 740 (751)
Q Consensus 673 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A-~~~~~~~~~~ 740 (751)
. +...|..++.+|...|++++|+..|+++++.. +.+...+..++.++.+.|+.++| .+.+++++.+
T Consensus 228 ~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 294 (336)
T 1p5q_A 228 N-NEKGLSRRGEAHLAVNDFELARADFQKVLQLY-PNNKAAKTQLAVCQQRIRRQLAREKKLYANMFER 294 (336)
T ss_dssp T-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred C-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4 66777777777777788888888877777753 45667777777777777777777 4566666543
No 134
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.61 E-value=1.1e-06 Score=75.47 Aligned_cols=119 Identities=8% Similarity=-0.021 Sum_probs=90.2
Q ss_pred HhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 004470 606 AATYNPLIKQHCLRNDMRTTAKIYKGMCAQGITPDGNTYNILLQGHCKARNMKEAWFLHKEMVQKGFNLTTSSYNALIKG 685 (751)
Q Consensus 606 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~ 685 (751)
...+..+...+...|++++|.+.+++..+.. +.+...+..+...+...|++++|+..++++.+..+. +...+..++..
T Consensus 12 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~ 89 (131)
T 2vyi_A 12 AERLKTEGNEQMKVENFEAAVHFYGKAIELN-PANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPA-YSKAYGRMGLA 89 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHccCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCcc-CHHHHHHHHHH
Confidence 4456666677777888888888888777643 335677778888888888888888888888876544 67788888888
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCh
Q 004470 686 FLKRKKYLEARELFEEMRRGGLVADREIYYFFVDINFEEGNT 727 (751)
Q Consensus 686 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 727 (751)
+...|++++|...++++.+.. +.+...+..++.++.+.|++
T Consensus 90 ~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 90 LSSLNKHVEAVAYYKKALELD-PDNETYKSNLKIAELKLREA 130 (131)
T ss_dssp HHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTTC
T ss_pred HHHhCCHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHhcC
Confidence 888888888888888888764 45677777777787777764
No 135
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.60 E-value=3.6e-07 Score=85.94 Aligned_cols=97 Identities=13% Similarity=-0.064 Sum_probs=44.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCC----H
Q 004470 643 TYNILLQGHCKARNMKEAWFLHKEMVQK----GFNL--TTSSYNALIKGFLKRKKYLEARELFEEMRRGGL-VAD----R 711 (751)
Q Consensus 643 ~~~~li~~~~~~g~~~~A~~~~~~~~~~----~~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~----~ 711 (751)
++..+...+...|++++|...+++.++. +..+ ....+..++..+...|++++|...+++.++..- ..+ .
T Consensus 68 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 147 (203)
T 3gw4_A 68 ALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIA 147 (203)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHH
Confidence 3444445555555555555555544432 1010 122344555555555555555555555543100 011 1
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 004470 712 EIYYFFVDINFEEGNTEITLELCDAAIE 739 (751)
Q Consensus 712 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 739 (751)
..+..++.++...|++++|.+.++++++
T Consensus 148 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 175 (203)
T 3gw4_A 148 CAFRGLGDLAQQEKNLLEAQQHWLRARD 175 (203)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 2234455555555555555555555554
No 136
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.59 E-value=3.4e-07 Score=84.11 Aligned_cols=122 Identities=13% Similarity=0.098 Sum_probs=90.9
Q ss_pred HhcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH-HHhcCCH--H
Q 004470 582 CMSGMIEDGEKLLKWMLEKGLKPNAATYNPLIKQHCLRNDMRTTAKIYKGMCAQGITPDGNTYNILLQG-HCKARNM--K 658 (751)
Q Consensus 582 ~~~g~~~~A~~l~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~-~~~~g~~--~ 658 (751)
...|++++|...+++..+.. +.+...+..+...|...|++++|.+.|+++++.. +.+...+..+... +...|++ +
T Consensus 21 ~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~l~~~~~~~~~~ 98 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR-GENAELYAALATVLYYQASQHMTA 98 (177)
T ss_dssp C-----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-CSCHHHHHHHHHHHHHHTTTCCCH
T ss_pred hhccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhcCCcchH
Confidence 45678888888888887763 2356778888888888888888888888888753 2356677777777 6788887 8
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 004470 659 EAWFLHKEMVQKGFNLTTSSYNALIKGFLKRKKYLEARELFEEMRRGG 706 (751)
Q Consensus 659 ~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 706 (751)
+|+..++++++..+. +...+..++..|...|++++|...++++++..
T Consensus 99 ~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 145 (177)
T 2e2e_A 99 QTRAMIDKALALDSN-EITALMLLASDAFMQANYAQAIELWQKVMDLN 145 (177)
T ss_dssp HHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcccHHHHHHHHHHHHhhC
Confidence 888888888887544 67778888888888888888888888888753
No 137
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.59 E-value=1.4e-07 Score=94.06 Aligned_cols=99 Identities=12% Similarity=-0.034 Sum_probs=74.8
Q ss_pred CChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCccCHHhHHHHHHHHHhCCCCHHHHHHHHHhchhcCCCcCHHHHHHH
Q 004470 183 SDPHVFDIFFQVLVEARKLNEARKLFEKLLNYGLVISVDSCNLFLSRLSNTCDGLRMVVKSFTEFPELGICWNTASYNIM 262 (751)
Q Consensus 183 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 262 (751)
.++..+..++..+.+.|++++|+..|+++++. .|+...+...++.++...|++++|...++++.+..+. +...+..+
T Consensus 2 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l 78 (281)
T 2c2l_A 2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITR--NPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQ-SVKAHFFL 78 (281)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTT-CHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-CHHHHHHH
Confidence 34567788888999999999999999998886 5655555555555555678888888888888777554 67777777
Q ss_pred HHHHHhcCCHHHHHHHHHHHHh
Q 004470 263 IHCLCRFGKIKEAHLLLLQMEL 284 (751)
Q Consensus 263 i~~~~~~g~~~~A~~~~~~m~~ 284 (751)
..+|.+.|++++|+..|++..+
T Consensus 79 g~~~~~~g~~~~A~~~~~~al~ 100 (281)
T 2c2l_A 79 GQCQLEMESYDEAIANLQRAYS 100 (281)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHH
Confidence 7788888888888888777654
No 138
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.59 E-value=1.6e-07 Score=93.68 Aligned_cols=96 Identities=15% Similarity=-0.028 Sum_probs=46.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 004470 502 YTYNSIVNGLCKAGNILQAVKLMEDMEVAGFHPDTFTYTTIMDAYCKSGEMVKAHELLRDMLDKGLQPSVVTFNVLMNGF 581 (751)
Q Consensus 502 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~ 581 (751)
..+..+...+.+.|++++|+..+++..+.. +.+...|..+...|.+.|++++|...+++.++.. +.+...+..+..+|
T Consensus 5 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~ 82 (281)
T 2c2l_A 5 QELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQCQ 82 (281)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 344444445555555555555555554432 2344444445555555555555555555544432 22344444444444
Q ss_pred HhcCChhHHHHHHHHHHH
Q 004470 582 CMSGMIEDGEKLLKWMLE 599 (751)
Q Consensus 582 ~~~g~~~~A~~l~~~~~~ 599 (751)
...|++++|...+++..+
T Consensus 83 ~~~g~~~~A~~~~~~al~ 100 (281)
T 2c2l_A 83 LEMESYDEAIANLQRAYS 100 (281)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHH
Confidence 455555555554444443
No 139
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.58 E-value=4e-06 Score=84.10 Aligned_cols=166 Identities=9% Similarity=-0.027 Sum_probs=118.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCH------HHHHHHHHHHHhcCChhHHHHHHHHHHHcCC---CCC--H
Q 004470 538 TYTTIMDAYCKSGEMVKAHELLRDMLDKGLQPSV------VTFNVLMNGFCMSGMIEDGEKLLKWMLEKGL---KPN--A 606 (751)
Q Consensus 538 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~------~~~~~li~~~~~~g~~~~A~~l~~~~~~~g~---~p~--~ 606 (751)
.+...+..+...|++++|.+.+++..+.... .. ..+..+...+...|++++|...+++..+... .+. .
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~ 155 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEY-HPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNL 155 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCC-CHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccccC-ChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHH
Confidence 4445566677888888888888777765322 22 2234455566777888889888888875421 111 3
Q ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHHC-CCCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC----CCC-C
Q 004470 607 ATYNPLIKQHCLRNDMRTTAKIYKGMCAQ-GITPD-----GNTYNILLQGHCKARNMKEAWFLHKEMVQKG----FNL-T 675 (751)
Q Consensus 607 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~-g~~p~-----~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~----~~p-~ 675 (751)
.+++.+...|...|++++|.+.++++.+. ...|+ ..++..++..|.+.|++++|+..++++++.. ... -
T Consensus 156 ~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~ 235 (293)
T 2qfc_A 156 YIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALI 235 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHH
Confidence 47788888889999999999999888731 01122 2578888999999999999999999887632 111 1
Q ss_pred HHHHHHHHHHHHhcCCHHHH-HHHHHHHHH
Q 004470 676 TSSYNALIKGFLKRKKYLEA-RELFEEMRR 704 (751)
Q Consensus 676 ~~~~~~l~~~~~~~g~~~~A-~~~~~~~~~ 704 (751)
..+|..++.+|.+.|++++| ...++++..
T Consensus 236 ~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~ 265 (293)
T 2qfc_A 236 GQLYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 56888999999999999999 777888765
No 140
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.56 E-value=9.9e-07 Score=76.16 Aligned_cols=117 Identities=13% Similarity=0.041 Sum_probs=77.4
Q ss_pred HhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 004470 606 AATYNPLIKQHCLRNDMRTTAKIYKGMCAQGITPDGNTYNILLQGHCKARNMKEAWFLHKEMVQKGFNLTTSSYNALIKG 685 (751)
Q Consensus 606 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~ 685 (751)
...+..+...+...|++++|.+.+++..+.. +.+...+..+...+...|++++|++.++++++..+. +...+..++.+
T Consensus 16 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~la~~ 93 (133)
T 2lni_A 16 ALMVKNKGNECFQKGDYPQAMKHYTEAIKRN-PKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPT-FIKGYTRKAAA 93 (133)
T ss_dssp HHHHHHHHHHHHHTTCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC-chHHHHHHHHH
Confidence 4455666666666777777777777666542 225666667777777777777777777777765443 56677777777
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 004470 686 FLKRKKYLEARELFEEMRRGGLVADREIYYFFVDINFEEG 725 (751)
Q Consensus 686 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 725 (751)
+.+.|++++|.+.++++.+.. +.+...+..+..++.+.|
T Consensus 94 ~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~ 132 (133)
T 2lni_A 94 LEAMKDYTKAMDVYQKALDLD-SSCKEAADGYQRCMMAQY 132 (133)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-GGGTHHHHHHHHHHHHHT
T ss_pred HHHHhhHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHhc
Confidence 777777777777777777643 334455666666666554
No 141
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.54 E-value=1.2e-06 Score=75.15 Aligned_cols=96 Identities=19% Similarity=0.159 Sum_probs=57.8
Q ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 004470 607 ATYNPLIKQHCLRNDMRTTAKIYKGMCAQGITPDGNTYNILLQGHCKARNMKEAWFLHKEMVQKGFNLTTSSYNALIKGF 686 (751)
Q Consensus 607 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~ 686 (751)
..+..+...+...|++++|.+.|++.++.. +.+...|..+..++.+.|++++|+..++++++.++. +...|..++.++
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~ 82 (126)
T 3upv_A 5 EEARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPN-FVRAYIRKATAQ 82 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHH
Confidence 345555555666666666666666666542 224555666666666666666666666666665433 455666666666
Q ss_pred HhcCCHHHHHHHHHHHHH
Q 004470 687 LKRKKYLEARELFEEMRR 704 (751)
Q Consensus 687 ~~~g~~~~A~~~~~~~~~ 704 (751)
...|++++|+..|+++++
T Consensus 83 ~~~~~~~~A~~~~~~al~ 100 (126)
T 3upv_A 83 IAVKEYASALETLDAART 100 (126)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HHHhCHHHHHHHHHHHHH
Confidence 666666666666666655
No 142
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.54 E-value=3.1e-06 Score=76.33 Aligned_cols=130 Identities=12% Similarity=-0.024 Sum_probs=87.1
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 004470 572 VTFNVLMNGFCMSGMIEDGEKLLKWMLEKGLKPNAATYNPLIKQHCLRNDMRTTAKIYKGMCAQGITPDGNTYNILLQGH 651 (751)
Q Consensus 572 ~~~~~li~~~~~~g~~~~A~~l~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~ 651 (751)
..+..+...+...|++++|...+++..+.. +.+...+..+...+...|++++|.+.+++.++.. +.+...+..+...+
T Consensus 14 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~ 91 (166)
T 1a17_A 14 EELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASN 91 (166)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHH
Confidence 345555666666777777777777766653 2245666667777777777777777777777643 23566777777788
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH--HHHHHhcCCHHHHHHHHHHHHH
Q 004470 652 CKARNMKEAWFLHKEMVQKGFNLTTSSYNAL--IKGFLKRKKYLEARELFEEMRR 704 (751)
Q Consensus 652 ~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l--~~~~~~~g~~~~A~~~~~~~~~ 704 (751)
...|++++|...++++++..+. +...+..+ +..+.+.|++++|++.+++...
T Consensus 92 ~~~~~~~~A~~~~~~a~~~~p~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 145 (166)
T 1a17_A 92 MALGKFRAALRDYETVVKVKPH-DKDAKMKYQECNKIVKQKAFERAIAGDEHKRS 145 (166)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHHHcccchHH
Confidence 8888888888888888776543 45555333 3336677888888888776543
No 143
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.52 E-value=1.1e-06 Score=77.22 Aligned_cols=97 Identities=12% Similarity=-0.033 Sum_probs=64.7
Q ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 004470 607 ATYNPLIKQHCLRNDMRTTAKIYKGMCAQGITPDGNTYNILLQGHCKARNMKEAWFLHKEMVQKGFNLTTSSYNALIKGF 686 (751)
Q Consensus 607 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~ 686 (751)
..+..+...+...|++++|.+.|++++..+ +.+...|..+..+|.+.|++++|+..|+++++.++. ++..+..++.+|
T Consensus 19 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~ 96 (142)
T 2xcb_A 19 EQLYALGFNQYQAGKWDDAQKIFQALCMLD-HYDARYFLGLGACRQSLGLYEQALQSYSYGALMDIN-EPRFPFHAAECH 96 (142)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CcHHHHHHHHHH
Confidence 344455566667777777777777776643 235666666777777777777777777777766544 566666777777
Q ss_pred HhcCCHHHHHHHHHHHHHC
Q 004470 687 LKRKKYLEARELFEEMRRG 705 (751)
Q Consensus 687 ~~~g~~~~A~~~~~~~~~~ 705 (751)
...|++++|.+.|+++++.
T Consensus 97 ~~~g~~~~A~~~~~~al~~ 115 (142)
T 2xcb_A 97 LQLGDLDGAESGFYSARAL 115 (142)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHh
Confidence 7777777777777776653
No 144
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.49 E-value=1.3e-06 Score=82.06 Aligned_cols=157 Identities=14% Similarity=0.041 Sum_probs=86.6
Q ss_pred HhcCChHHHHHHHHHHHcCCCCCchhhhHHHHHHHHHhhhcCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhC----C
Q 004470 140 VAAKDLKTAHGLIHDFWAKPNLDASIAFTHFVERLIYTYKDWGSDPHVFDIFFQVLVEARKLNEARKLFEKLLNY----G 215 (751)
Q Consensus 140 ~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----g 215 (751)
...|++++|..+++.+...+ ...+.++..++.++...|++++|...++++++. |
T Consensus 3 ~~~g~~~~A~~~~~~~~~~~----------------------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~ 60 (203)
T 3gw4_A 3 FEAHDYALAERQAQALLAHP----------------------ATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSG 60 (203)
T ss_dssp ----CHHHHHHHHHHHHTST----------------------TTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTC
T ss_pred cccccHHHHHHHHHHhcCCh----------------------HHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcC
Confidence 34688888888544443221 234567888999999999999999999988762 2
Q ss_pred CccCHHhHHHHHHHHHhCCCCHHHHHHHHHhchhc----CCC--cCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc----
Q 004470 216 LVISVDSCNLFLSRLSNTCDGLRMVVKSFTEFPEL----GIC--WNTASYNIMIHCLCRFGKIKEAHLLLLQMELR---- 285 (751)
Q Consensus 216 ~~p~~~~~~~ll~~l~~~~~~~~~a~~~~~~~~~~----~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---- 285 (751)
..|........++.++...|++++|...|+++.+. +.. .....+..+...+...|++++|...+++....
T Consensus 61 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~ 140 (203)
T 3gw4_A 61 DHTAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQA 140 (203)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHT
T ss_pred CcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhc
Confidence 23333333444444444566666666666665443 101 12334555566666666666666666554321
Q ss_pred CCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 004470 286 GCS-PDVVSFSTIINGYCYLGELQRVLKLIEEMQ 318 (751)
Q Consensus 286 g~~-p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 318 (751)
+.. .-..++..+...+...|++++|.+.+++..
T Consensus 141 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 174 (203)
T 3gw4_A 141 DDQVAIACAFRGLGDLAQQEKNLLEAQQHWLRAR 174 (203)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHH
Confidence 100 001223444455555555555555555443
No 145
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.48 E-value=1.6e-06 Score=74.89 Aligned_cols=118 Identities=7% Similarity=-0.141 Sum_probs=64.4
Q ss_pred ChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCccCHHhHHHHHHHHHhCCCCHHHHHHHHHhchhcCCCcCHHHHHHHH
Q 004470 184 DPHVFDIFFQVLVEARKLNEARKLFEKLLNYGLVISVDSCNLFLSRLSNTCDGLRMVVKSFTEFPELGICWNTASYNIMI 263 (751)
Q Consensus 184 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li 263 (751)
++..+..++..+.+.|++++|...|+++++. .|+.......++.++...|++++|.+.|+++.+..+. +...+..+.
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~la 91 (133)
T 2lni_A 15 LALMVKNKGNECFQKGDYPQAMKHYTEAIKR--NPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPT-FIKGYTRKA 91 (133)
T ss_dssp HHHHHHHHHHHHHHTTCSHHHHHHHHHHHTT--CTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC-chHHHHHHH
Confidence 3445555566666666666666666665554 3333333333444444556666666666666555433 455666666
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcC
Q 004470 264 HCLCRFGKIKEAHLLLLQMELRGCSPDVVSFSTIINGYCYLG 305 (751)
Q Consensus 264 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g 305 (751)
..+.+.|++++|...|++..+... .+...+..+...+.+.|
T Consensus 92 ~~~~~~~~~~~A~~~~~~~~~~~p-~~~~~~~~l~~~~~~~~ 132 (133)
T 2lni_A 92 AALEAMKDYTKAMDVYQKALDLDS-SCKEAADGYQRCMMAQY 132 (133)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCG-GGTHHHHHHHHHHHHHT
T ss_pred HHHHHHhhHHHHHHHHHHHHHhCC-CchHHHHHHHHHHHHhc
Confidence 666666666666666666655422 23344555555555444
No 146
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.48 E-value=9.6e-07 Score=78.29 Aligned_cols=104 Identities=11% Similarity=-0.049 Sum_probs=60.5
Q ss_pred hCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHcCCCCCchhhhHHHHHHHHHhhhcCCCChhhHHHHHHHHHhcCChh
Q 004470 123 LRREPILEARCIVVQISVAAKDLKTAHGLIHDFWAKPNLDASIAFTHFVERLIYTYKDWGSDPHVFDIFFQVLVEARKLN 202 (751)
Q Consensus 123 ~~~~~~~~~~~~~~~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 202 (751)
...|.+..++..++..+...|++++|...+.+++..+ |.++.+|..++.+|...|+++
T Consensus 15 ~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~----------------------p~~~~~~~~lg~~~~~~g~~~ 72 (148)
T 2vgx_A 15 EISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLD----------------------HYDSRFFLGLGACRQAMGQYD 72 (148)
T ss_dssp TCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----------------------TTCHHHHHHHHHHHHHTTCHH
T ss_pred cCCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcC----------------------cccHHHHHHHHHHHHHHhhHH
Confidence 3344445555566666666666666666666665543 455566666666666666666
Q ss_pred HHHHHHHHHHhCCCccCHHhHHHHHHHHHhCCCCHHHHHHHHHhchhc
Q 004470 203 EARKLFEKLLNYGLVISVDSCNLFLSRLSNTCDGLRMVVKSFTEFPEL 250 (751)
Q Consensus 203 ~A~~~~~~~~~~g~~p~~~~~~~ll~~l~~~~~~~~~a~~~~~~~~~~ 250 (751)
+|+..|+++++. .|+.......++.++...|++++|.+.|+++.+.
T Consensus 73 ~A~~~~~~al~l--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 118 (148)
T 2vgx_A 73 LAIHSYSYGAVM--DIXEPRFPFHAAECLLQXGELAEAESGLFLAQEL 118 (148)
T ss_dssp HHHHHHHHHHHH--STTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhc--CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 666666666655 3443333333444444556666666666665554
No 147
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.47 E-value=1.8e-06 Score=78.01 Aligned_cols=100 Identities=8% Similarity=-0.002 Sum_probs=87.2
Q ss_pred CHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 004470 605 NAATYNPLIKQHCLRNDMRTTAKIYKGMCAQGITPDGNTYNILLQGHCKARNMKEAWFLHKEMVQKGFNLTTSSYNALIK 684 (751)
Q Consensus 605 ~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~ 684 (751)
+...+..+...+...|++++|++.|++.++.. +.+...|..+..+|.+.|++++|+..++++++..+. +...|..++.
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~ 87 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSIA-PANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPK-YSKAWSRLGL 87 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHH
Confidence 45677888888999999999999999999853 336888899999999999999999999999988655 7889999999
Q ss_pred HHHhcCCHHHHHHHHHHHHHCC
Q 004470 685 GFLKRKKYLEARELFEEMRRGG 706 (751)
Q Consensus 685 ~~~~~g~~~~A~~~~~~~~~~~ 706 (751)
+|...|++++|+..|+++++..
T Consensus 88 ~~~~~g~~~~A~~~~~~al~~~ 109 (164)
T 3sz7_A 88 ARFDMADYKGAKEAYEKGIEAE 109 (164)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHccCHHHHHHHHHHHHHhC
Confidence 9999999999999999998853
No 148
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.47 E-value=3.1e-06 Score=73.62 Aligned_cols=98 Identities=11% Similarity=-0.025 Sum_probs=62.2
Q ss_pred CHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 004470 605 NAATYNPLIKQHCLRNDMRTTAKIYKGMCAQGITPDGNTYNILLQGHCKARNMKEAWFLHKEMVQKGFNLTTSSYNALIK 684 (751)
Q Consensus 605 ~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~ 684 (751)
+...+..+...+...|++++|...|++.++.. +.+...+..+...+...|++++|+..++++++.++. +...+..++.
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~ 85 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQ-SVKAHFFLGQ 85 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC-cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCch-hHHHHHHHHH
Confidence 45556666666666666666666666666542 224556666666666666666666666666665433 5566666666
Q ss_pred HHHhcCCHHHHHHHHHHHHH
Q 004470 685 GFLKRKKYLEARELFEEMRR 704 (751)
Q Consensus 685 ~~~~~g~~~~A~~~~~~~~~ 704 (751)
++...|++++|+..|+++++
T Consensus 86 ~~~~~~~~~~A~~~~~~a~~ 105 (137)
T 3q49_B 86 CQLEMESYDEAIANLQRAYS 105 (137)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHH
Confidence 66666666666666666665
No 149
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.46 E-value=1.4e-06 Score=74.97 Aligned_cols=104 Identities=13% Similarity=0.099 Sum_probs=55.6
Q ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC--C----HHHHH
Q 004470 607 ATYNPLIKQHCLRNDMRTTAKIYKGMCAQGITPDGNTYNILLQGHCKARNMKEAWFLHKEMVQKGFNL--T----TSSYN 680 (751)
Q Consensus 607 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p--~----~~~~~ 680 (751)
..+..+...+.+.|++++|++.|++.++.. +.+...|..+..+|.+.|++++|++.++++++.++.. + ..+|.
T Consensus 9 ~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~-p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~ 87 (127)
T 4gcn_A 9 IAEKDLGNAAYKQKDFEKAHVHYDKAIELD-PSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMS 87 (127)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHH
Confidence 344555556666666666666666665532 1235555556666666666666666666655432110 1 12455
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH
Q 004470 681 ALIKGFLKRKKYLEARELFEEMRRGGLVADREI 713 (751)
Q Consensus 681 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 713 (751)
.++.++...|++++|++.|++.++. .||+..
T Consensus 88 ~lg~~~~~~~~~~~A~~~~~kal~~--~~~~~~ 118 (127)
T 4gcn_A 88 RAGNAFQKQNDLSLAVQWFHRSLSE--FRDPEL 118 (127)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH--SCCHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhh--CcCHHH
Confidence 5555555666666666666665542 344443
No 150
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.46 E-value=1.4e-06 Score=72.45 Aligned_cols=101 Identities=13% Similarity=-0.025 Sum_probs=80.3
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC--CHHHHHHHH
Q 004470 641 GNTYNILLQGHCKARNMKEAWFLHKEMVQKGFNLTTSSYNALIKGFLKRKKYLEARELFEEMRRGGLVA--DREIYYFFV 718 (751)
Q Consensus 641 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~~l~ 718 (751)
...+..+...+...|++++|+..++++++..+. +...+..++..+...|++++|++.++++++.. +. +...+..++
T Consensus 6 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~l~ 83 (112)
T 2kck_A 6 PEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPE-ESKYWLMKGKALYNLERYEEAVDCYNYVINVI-EDEYNKDVWAAKA 83 (112)
T ss_dssp TTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-CCTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcC-CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccchHHHHHHHH
Confidence 445666777788888888888888888876544 67788888888888888888888888888864 44 677888888
Q ss_pred HHHHhc-CChhHHHHHHHHHHHcCCC
Q 004470 719 DINFEE-GNTEITLELCDAAIECYLV 743 (751)
Q Consensus 719 ~~~~~~-g~~~~A~~~~~~~~~~~~~ 743 (751)
.++.+. |++++|.+.++++++....
T Consensus 84 ~~~~~~~~~~~~A~~~~~~~~~~~p~ 109 (112)
T 2kck_A 84 DALRYIEGKEVEAEIAEARAKLEHHH 109 (112)
T ss_dssp HHHTTCSSCSHHHHHHHHHHGGGCCC
T ss_pred HHHHHHhCCHHHHHHHHHHHhhcccC
Confidence 888888 8888888888888877654
No 151
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.46 E-value=3.4e-07 Score=93.88 Aligned_cols=162 Identities=9% Similarity=-0.039 Sum_probs=110.4
Q ss_pred HHHHHHHHhhhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHcCCCCCchhhhHHHHHHHHHhhhcCCCChhhHHHH
Q 004470 112 RLVLDFFDWACLRREPILEARCIVVQISVAAKDLKTAHGLIHDFWAKPNLDASIAFTHFVERLIYTYKDWGSDPHVFDIF 191 (751)
Q Consensus 112 ~~al~~f~~~~~~~~~~~~~~~~~~~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l 191 (751)
+.|+..|+.+....+....++..++..+...|++++|...+.+++.............. ..+ -+....++..+
T Consensus 130 ~~A~~~~~~a~~~~p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~-~~~------~~~~~~~~~nl 202 (336)
T 1p5q_A 130 EKAKESWEMNSEEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEA-QKA------QALRLASHLNL 202 (336)
T ss_dssp ECCCCGGGCCHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHH-HHH------HHHHHHHHHHH
T ss_pred ccccchhcCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHH-HHH------HHHHHHHHHHH
Confidence 44555555554444556678889999999999999999999999876421110000000 000 01114678889
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCCCccCHHhHHHHHHHHHhCCCCHHHHHHHHHhchhcCCCcCHHHHHHHHHHHHhcCC
Q 004470 192 FQVLVEARKLNEARKLFEKLLNYGLVISVDSCNLFLSRLSNTCDGLRMVVKSFTEFPELGICWNTASYNIMIHCLCRFGK 271 (751)
Q Consensus 192 ~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 271 (751)
+.+|.+.|++++|+..|+++++. .|+.......++.++...|++++|+..|+++.+..+. +..++..+...+.+.|+
T Consensus 203 a~~~~~~g~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~-~~~a~~~l~~~~~~~~~ 279 (336)
T 1p5q_A 203 AMCHLKLQAFSAAIESCNKALEL--DSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPN-NKAAKTQLAVCQQRIRR 279 (336)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSS-CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHHHH
Confidence 99999999999999999999887 5655554555555555778888888888888877654 67777778888888888
Q ss_pred HHHH-HHHHHHHH
Q 004470 272 IKEA-HLLLLQME 283 (751)
Q Consensus 272 ~~~A-~~~~~~m~ 283 (751)
.++| ..+|..|.
T Consensus 280 ~~~a~~~~~~~~~ 292 (336)
T 1p5q_A 280 QLAREKKLYANMF 292 (336)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 8777 34555554
No 152
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.46 E-value=1.2e-06 Score=74.49 Aligned_cols=96 Identities=16% Similarity=-0.039 Sum_probs=67.2
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 004470 645 NILLQGHCKARNMKEAWFLHKEMVQKGFNLTTSSYNALIKGFLKRKKYLEARELFEEMRRGGLVADREIYYFFVDINFEE 724 (751)
Q Consensus 645 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 724 (751)
..+...+.+.|++++|+..++++++..+. +...|..++.++...|++++|+..++++++.. +.+...+..++.++...
T Consensus 21 ~~~g~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~~~~~la~~~~~~ 98 (121)
T 1hxi_A 21 MEEGLSMLKLANLAEAALAFEAVCQKEPE-REEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHTNE 98 (121)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHc
Confidence 34556667777777777777777776544 66777777777777777777777777777754 44666777777777777
Q ss_pred CChhHHHHHHHHHHHcCC
Q 004470 725 GNTEITLELCDAAIECYL 742 (751)
Q Consensus 725 g~~~~A~~~~~~~~~~~~ 742 (751)
|++++|++.++++++...
T Consensus 99 g~~~~A~~~~~~al~~~P 116 (121)
T 1hxi_A 99 HNANAALASLRAWLLSQP 116 (121)
T ss_dssp HHHHHHHHHHHHHHC---
T ss_pred CCHHHHHHHHHHHHHhCc
Confidence 777777777777776543
No 153
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.45 E-value=5.3e-07 Score=79.37 Aligned_cols=106 Identities=11% Similarity=-0.066 Sum_probs=62.4
Q ss_pred hhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHcCCCCCchhhhHHHHHHHHHhhhcCCCChhhHHHHHHHHHhcCC
Q 004470 121 ACLRREPILEARCIVVQISVAAKDLKTAHGLIHDFWAKPNLDASIAFTHFVERLIYTYKDWGSDPHVFDIFFQVLVEARK 200 (751)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~g~ 200 (751)
+....|.+...+..++..+...|++++|...+.+++..+ |.++.+|..++.+|.+.|+
T Consensus 10 al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~----------------------p~~~~~~~~lg~~~~~~g~ 67 (142)
T 2xcb_A 10 LRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLD----------------------HYDARYFLGLGACRQSLGL 67 (142)
T ss_dssp CTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----------------------TTCHHHHHHHHHHHHHTTC
T ss_pred HHcCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhC----------------------CccHHHHHHHHHHHHHHhh
Confidence 333344445555566666666666666666666665543 4556666666666666666
Q ss_pred hhHHHHHHHHHHhCCCccCHHhHHHHHHHHHhCCCCHHHHHHHHHhchhc
Q 004470 201 LNEARKLFEKLLNYGLVISVDSCNLFLSRLSNTCDGLRMVVKSFTEFPEL 250 (751)
Q Consensus 201 ~~~A~~~~~~~~~~g~~p~~~~~~~ll~~l~~~~~~~~~a~~~~~~~~~~ 250 (751)
+++|+..|+++++. .|+.......++.++...|++++|.+.|+++.+.
T Consensus 68 ~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 115 (142)
T 2xcb_A 68 YEQALQSYSYGALM--DINEPRFPFHAAECHLQLGDLDGAESGFYSARAL 115 (142)
T ss_dssp HHHHHHHHHHHHHH--CTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhc--CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 66666666666665 3444333344444444556666666666666554
No 154
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.44 E-value=8.4e-06 Score=69.09 Aligned_cols=115 Identities=15% Similarity=0.111 Sum_probs=69.3
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 004470 571 VVTFNVLMNGFCMSGMIEDGEKLLKWMLEKGLKPNAATYNPLIKQHCLRNDMRTTAKIYKGMCAQGITPDGNTYNILLQG 650 (751)
Q Consensus 571 ~~~~~~li~~~~~~g~~~~A~~l~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~ 650 (751)
...+..+...+...|++++|.+.++++.+.. +.+..++..+...+...|++++|...++++.+.. +.+..++..+...
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~ 86 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNA 86 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHH
Confidence 3455555566666666666666666665542 2244555666666666666666666666666542 2355666667777
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 004470 651 HCKARNMKEAWFLHKEMVQKGFNLTTSSYNALIKGFLK 688 (751)
Q Consensus 651 ~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 688 (751)
+...|++++|...++++.+..+. +...+..+...+..
T Consensus 87 ~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~ 123 (125)
T 1na0_A 87 YYKQGDYDEAIEYYQKALELDPN-NAEAKQNLGNAKQK 123 (125)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHh
Confidence 77777777777777777665433 45555555555443
No 155
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.44 E-value=2.1e-06 Score=73.64 Aligned_cols=120 Identities=10% Similarity=-0.050 Sum_probs=83.3
Q ss_pred ChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCccCHHhHHHHHHHHHhCCCCHHHHHHHHHhchhcCCCcCHHHHHHHH
Q 004470 184 DPHVFDIFFQVLVEARKLNEARKLFEKLLNYGLVISVDSCNLFLSRLSNTCDGLRMVVKSFTEFPELGICWNTASYNIMI 263 (751)
Q Consensus 184 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li 263 (751)
++.++..++..+...|++++|...|+++++. .|+.......++.++...|++++|...++++.+..+. +...+..+.
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~ 87 (131)
T 2vyi_A 11 EAERLKTEGNEQMKVENFEAAVHFYGKAIEL--NPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPA-YSKAYGRMG 87 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHH
T ss_pred hhHHHHHHHHHHHHccCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCcc-CHHHHHHHH
Confidence 4567788899999999999999999998876 4544444444455545677778888877777776543 566777777
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCH
Q 004470 264 HCLCRFGKIKEAHLLLLQMELRGCSPDVVSFSTIINGYCYLGEL 307 (751)
Q Consensus 264 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~ 307 (751)
..+.+.|++++|...|++..+... .+...+..+...+.+.|++
T Consensus 88 ~~~~~~~~~~~A~~~~~~~~~~~p-~~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 88 LALSSLNKHVEAVAYYKKALELDP-DNETYKSNLKIAELKLREA 130 (131)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHTTC
T ss_pred HHHHHhCCHHHHHHHHHHHHhcCc-cchHHHHHHHHHHHHHhcC
Confidence 777777777777777777665432 3555666666666665553
No 156
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.44 E-value=0.00015 Score=72.70 Aligned_cols=98 Identities=7% Similarity=0.006 Sum_probs=48.2
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC-HHHHHHH
Q 004470 482 LETANELLHEMCRKGLQLNIYTYNSIVNGLCKAG--NILQAVKLMEDMEVAGFHPDTFTYTTIMDAYCKSGE-MVKAHEL 558 (751)
Q Consensus 482 ~~~A~~l~~~m~~~g~~~~~~~~~~li~~~~~~g--~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~-~~~A~~~ 558 (751)
+++++.+++.+....++ +..+|+.-.-.+.+.| .+++++.+++.+.+.. +-+..+|+--...+...|. ++++++.
T Consensus 90 l~~EL~~~~~~L~~~PK-ny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~d-prNy~AW~~R~~vl~~l~~~~~eel~~ 167 (331)
T 3dss_A 90 VKAELGFLESCLRVNPK-SYGTWHHRCWLLSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAF 167 (331)
T ss_dssp HHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCC-CHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCcCHHHHHHH
Confidence 34555555555554333 4445544444444444 2555555555555544 3445555544444444554 3555555
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHH
Q 004470 559 LRDMLDKGLQPSVVTFNVLMNGFC 582 (751)
Q Consensus 559 ~~~~~~~~~~p~~~~~~~li~~~~ 582 (751)
++.+++.. +-|..+|+.....+.
T Consensus 168 ~~~~I~~~-p~N~SAW~~R~~ll~ 190 (331)
T 3dss_A 168 TDSLITRN-FSNYSSWHYRSCLLP 190 (331)
T ss_dssp HHHHHHHC-SCCHHHHHHHHHHHH
T ss_pred HHHHHHHC-CCCHHHHHHHHHHHH
Confidence 55555543 334455544444443
No 157
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.43 E-value=0.00016 Score=72.42 Aligned_cols=137 Identities=9% Similarity=0.039 Sum_probs=73.3
Q ss_pred HhcCCHH-HHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC----------HHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 004470 477 CKSGELE-TANELLHEMCRKGLQLNIYTYNSIVNGLCKAGN----------ILQAVKLMEDMEVAGFHPDTFTYTTIMDA 545 (751)
Q Consensus 477 ~~~g~~~-~A~~l~~~m~~~g~~~~~~~~~~li~~~~~~g~----------~~~A~~~~~~~~~~~~~~~~~~~~~li~~ 545 (751)
.+.|.++ +|+++++.+...++. +...|+.--..+...+. +++++.+++.+.... +-+..+|+.-...
T Consensus 40 ~~~~e~s~eaL~~t~~~L~~nP~-~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~-PKny~aW~hR~wl 117 (331)
T 3dss_A 40 RQAGELDESVLELTSQILGANPD-FATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWL 117 (331)
T ss_dssp HHTTCCSHHHHHHHHHHHTTCTT-CHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHcCCCCHHHHHHHHHHHHHCch-hHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 3455543 677777777766433 44455544333333322 455666666665543 4455555555555
Q ss_pred HHHcC--CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC-hhHHHHHHHHHHHcCCCCCHhhHHHHHHHHH
Q 004470 546 YCKSG--EMVKAHELLRDMLDKGLQPSVVTFNVLMNGFCMSGM-IEDGEKLLKWMLEKGLKPNAATYNPLIKQHC 617 (751)
Q Consensus 546 ~~~~g--~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~-~~~A~~l~~~~~~~g~~p~~~~~~~l~~~~~ 617 (751)
+.+.+ .+++++.+++.+.+.. +-|..+|+.-...+...|. ++++++.++++++..+. |...|+.....+.
T Consensus 118 L~~l~~~~~~~EL~~~~k~l~~d-prNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~-N~SAW~~R~~ll~ 190 (331)
T 3dss_A 118 LSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS-NYSSWHYRSCLLP 190 (331)
T ss_dssp HHHCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHH
T ss_pred HhccCcccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHH
Confidence 55555 3566666666666543 3355555555555555555 35666666666655322 4445544444433
No 158
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.43 E-value=8.2e-06 Score=68.34 Aligned_cols=109 Identities=9% Similarity=0.022 Sum_probs=69.5
Q ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 004470 607 ATYNPLIKQHCLRNDMRTTAKIYKGMCAQGITPDGNTYNILLQGHCKARNMKEAWFLHKEMVQKGFNLTTSSYNALIKGF 686 (751)
Q Consensus 607 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~ 686 (751)
..+..+...+...|++++|.+.+++..+.. +.+...+..+...+...|++++|...++++.+..+. +...+..++.++
T Consensus 5 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~ 82 (118)
T 1elw_A 5 NELKEKGNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPD-WGKGYSRKAAAL 82 (118)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcc-cHHHHHHHHHHH
Confidence 345555566666677777777777666542 225666666677777777777777777777765433 566677777777
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 004470 687 LKRKKYLEARELFEEMRRGGLVADREIYYFFV 718 (751)
Q Consensus 687 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 718 (751)
...|++++|.+.++++.+.+ +.+...+..+.
T Consensus 83 ~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~ 113 (118)
T 1elw_A 83 EFLNRFEEAKRTYEEGLKHE-ANNPQLKEGLQ 113 (118)
T ss_dssp HHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHHcC-CCCHHHHHHHH
Confidence 77777777777777777643 33444444433
No 159
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.42 E-value=4.1e-06 Score=70.23 Aligned_cols=102 Identities=11% Similarity=-0.096 Sum_probs=90.5
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 004470 640 DGNTYNILLQGHCKARNMKEAWFLHKEMVQKGFNLTTSSYNALIKGFLKRKKYLEARELFEEMRRGGLVADREIYYFFVD 719 (751)
Q Consensus 640 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 719 (751)
....+..++..+...|++++|...++++.+..+. +...+..++..+...|++++|...++++.+.. +.+...+..++.
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~ 80 (118)
T 1elw_A 3 QVNELKEKGNKALSVGNIDDALQCYSEAIKLDPH-NHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAA 80 (118)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHhhccHHHHHHHHHHHHHhC-cccHHHHHHHHH
Confidence 3456778889999999999999999999987654 78899999999999999999999999999864 557888999999
Q ss_pred HHHhcCChhHHHHHHHHHHHcCCC
Q 004470 720 INFEEGNTEITLELCDAAIECYLV 743 (751)
Q Consensus 720 ~~~~~g~~~~A~~~~~~~~~~~~~ 743 (751)
++...|++++|.+.++++++....
T Consensus 81 ~~~~~~~~~~A~~~~~~~~~~~~~ 104 (118)
T 1elw_A 81 ALEFLNRFEEAKRTYEEGLKHEAN 104 (118)
T ss_dssp HHHHTTCHHHHHHHHHHHHTTCTT
T ss_pred HHHHHhhHHHHHHHHHHHHHcCCC
Confidence 999999999999999999987543
No 160
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.42 E-value=4.3e-06 Score=78.26 Aligned_cols=132 Identities=10% Similarity=-0.095 Sum_probs=87.7
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCC-C--------------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 004470 609 YNPLIKQHCLRNDMRTTAKIYKGMCAQGIT-P--------------DGNTYNILLQGHCKARNMKEAWFLHKEMVQKGFN 673 (751)
Q Consensus 609 ~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~-p--------------~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~ 673 (751)
+..+...+...|++++|.+.|++.++.... | ....+..+..+|.+.|++++|+..++++++..+.
T Consensus 41 ~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~ 120 (198)
T 2fbn_A 41 IKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKIDKN 120 (198)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcc
Confidence 444444555555555555555555553111 0 0267778888888999999999999998887544
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHH-HHHHHHHHcCC
Q 004470 674 LTTSSYNALIKGFLKRKKYLEARELFEEMRRGGLVADREIYYFFVDINFEEGNTEITL-ELCDAAIECYL 742 (751)
Q Consensus 674 p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~-~~~~~~~~~~~ 742 (751)
+...+..++.+|...|++++|+..|+++++.. +.+...+..+..++...|+.+++. ..+..+...+.
T Consensus 121 -~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~f~~~~ 188 (198)
T 2fbn_A 121 -NVKALYKLGVANMYFGFLEEAKENLYKAASLN-PNNLDIRNSYELCVNKLKEARKKDKLTFGGMFDKGP 188 (198)
T ss_dssp -CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHC--------------
T ss_pred -cHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 77888889999999999999999999988864 557788888888888888888877 66666666553
No 161
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.39 E-value=1.8e-06 Score=79.10 Aligned_cols=121 Identities=4% Similarity=0.004 Sum_probs=76.1
Q ss_pred HhcCChhHHHHHHHHHHhCCCccCHHhHHHHHHHHHhCCCCHHHHHHHHHhchhcCCCcCHHHHHHHHHH-HHhcCCH--
Q 004470 196 VEARKLNEARKLFEKLLNYGLVISVDSCNLFLSRLSNTCDGLRMVVKSFTEFPELGICWNTASYNIMIHC-LCRFGKI-- 272 (751)
Q Consensus 196 ~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~-~~~~g~~-- 272 (751)
...|++++|+..++++++. .|+.......++.++...|++++|...|+++.+..+. +...+..+... +.+.|++
T Consensus 21 ~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~la~~l~~~~~~~~~ 97 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRA--NPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGE-NAELYAALATVLYYQASQHMT 97 (177)
T ss_dssp C-----CCCCHHHHHHHHH--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTTTCCC
T ss_pred hhccCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHhcCCcch
Confidence 4567777777777777665 4544444445555555667777777777777666544 56666666666 6667776
Q ss_pred HHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 004470 273 KEAHLLLLQMELRGCSPDVVSFSTIINGYCYLGELQRVLKLIEEMQIK 320 (751)
Q Consensus 273 ~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 320 (751)
++|+..|++...... .+...+..+...+...|++++|...++++.+.
T Consensus 98 ~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 144 (177)
T 2e2e_A 98 AQTRAMIDKALALDS-NEITALMLLASDAFMQANYAQAIELWQKVMDL 144 (177)
T ss_dssp HHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHcccHHHHHHHHHHHHhh
Confidence 777777777665432 34566666777777777777777777777665
No 162
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.38 E-value=5.6e-06 Score=71.07 Aligned_cols=101 Identities=12% Similarity=0.115 Sum_probs=73.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC--CCCC----HHHHH
Q 004470 642 NTYNILLQGHCKARNMKEAWFLHKEMVQKGFNLTTSSYNALIKGFLKRKKYLEARELFEEMRRGG--LVAD----REIYY 715 (751)
Q Consensus 642 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~----~~~~~ 715 (751)
..+..++..+.+.|++++|+..|+++++..+. +...|..++.+|.+.|++++|++.++++++.+ ..++ ...|.
T Consensus 9 ~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~-~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~ 87 (127)
T 4gcn_A 9 IAEKDLGNAAYKQKDFEKAHVHYDKAIELDPS-NITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMS 87 (127)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHH
Confidence 44667777888888888888888888877554 67778888888888888888888888877632 1122 24566
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHcCCC
Q 004470 716 FFVDINFEEGNTEITLELCDAAIECYLV 743 (751)
Q Consensus 716 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 743 (751)
.++.++...|++++|++.++++++....
T Consensus 88 ~lg~~~~~~~~~~~A~~~~~kal~~~~~ 115 (127)
T 4gcn_A 88 RAGNAFQKQNDLSLAVQWFHRSLSEFRD 115 (127)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCcC
Confidence 7777888888888888888888775443
No 163
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.36 E-value=4.2e-07 Score=85.31 Aligned_cols=146 Identities=8% Similarity=-0.123 Sum_probs=87.4
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHHHHcCCCCCchhhhHHHHHHHHHhhhcCCCChhhHHHHHHHHHhcCChhHHHHH
Q 004470 128 ILEARCIVVQISVAAKDLKTAHGLIHDFWAKPNLDASIAFTHFVERLIYTYKDWGSDPHVFDIFFQVLVEARKLNEARKL 207 (751)
Q Consensus 128 ~~~~~~~~~~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 207 (751)
....+..++..+...|++++|...+.+++.....+...... ....... .....++..++.+|.+.|++++|+..
T Consensus 37 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~-~~~~~~~-----~~~~~~~~~la~~~~~~~~~~~A~~~ 110 (198)
T 2fbn_A 37 SAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQ-ILLDKKK-----NIEISCNLNLATCYNKNKDYPKAIDH 110 (198)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCH-HHHHHHH-----HHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchh-hHHHHHH-----HHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 34567778888999999999999999998764211100000 0000000 00125677888888899999999998
Q ss_pred HHHHHhCCCccCHHhHHHHHHHHHhCCCCHHHHHHHHHhchhcCCCcCHHHHHHHHHHHHhcCCHHHHH-HHHHHH
Q 004470 208 FEKLLNYGLVISVDSCNLFLSRLSNTCDGLRMVVKSFTEFPELGICWNTASYNIMIHCLCRFGKIKEAH-LLLLQM 282 (751)
Q Consensus 208 ~~~~~~~g~~p~~~~~~~ll~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~-~~~~~m 282 (751)
++++++. .|+.......++.++...|++++|.+.|+++.+..+. +..++..+...+.+.++.+++. ..|..|
T Consensus 111 ~~~al~~--~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 183 (198)
T 2fbn_A 111 ASKVLKI--DKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPN-NLDIRNSYELCVNKLKEARKKDKLTFGGM 183 (198)
T ss_dssp HHHHHHH--STTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHHHC---------
T ss_pred HHHHHHh--CcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888876 4554444444555544567777777777777666543 5566666666666665555554 333333
No 164
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.34 E-value=3.9e-06 Score=71.84 Aligned_cols=94 Identities=6% Similarity=-0.126 Sum_probs=42.4
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhCCCccCHHhHHHHHHHHHhCCCCHHHHHHHHHhchhcCCCcCHHHHHHHHHHHH
Q 004470 188 FDIFFQVLVEARKLNEARKLFEKLLNYGLVISVDSCNLFLSRLSNTCDGLRMVVKSFTEFPELGICWNTASYNIMIHCLC 267 (751)
Q Consensus 188 ~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 267 (751)
+..++..+.+.|++++|+..|+++++. .|+.......++.++...|++++|+..|+++.+..+. +..+|..+..++.
T Consensus 7 ~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~ 83 (126)
T 3upv_A 7 ARLEGKEYFTKSDWPNAVKAYTEMIKR--APEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPN-FVRAYIRKATAQI 83 (126)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHH
Confidence 334444444444444444444444443 2333222223333333444444444444444444332 3444555555555
Q ss_pred hcCCHHHHHHHHHHHHh
Q 004470 268 RFGKIKEAHLLLLQMEL 284 (751)
Q Consensus 268 ~~g~~~~A~~~~~~m~~ 284 (751)
..|++++|+..|++..+
T Consensus 84 ~~~~~~~A~~~~~~al~ 100 (126)
T 3upv_A 84 AVKEYASALETLDAART 100 (126)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HHhCHHHHHHHHHHHHH
Confidence 55555555555555443
No 165
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.33 E-value=2.5e-05 Score=83.17 Aligned_cols=55 Identities=11% Similarity=0.062 Sum_probs=27.9
Q ss_pred HHHHHcCCHHHHHHHHHHHHHCCCCCC----------------HHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 004470 509 NGLCKAGNILQAVKLMEDMEVAGFHPD----------------TFTYTTIMDAYCKSGEMVKAHELLRDML 563 (751)
Q Consensus 509 ~~~~~~g~~~~A~~~~~~~~~~~~~~~----------------~~~~~~li~~~~~~g~~~~A~~~~~~~~ 563 (751)
..+.+.|++++|++.+..+.+...... ...+..++..|.+.|++++|.+.+..+.
T Consensus 12 ~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~ 82 (434)
T 4b4t_Q 12 RRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHST 82 (434)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTH
T ss_pred HHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 345556666666666666655431110 0124445555555555555555555443
No 166
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.31 E-value=1.8e-05 Score=69.62 Aligned_cols=110 Identities=7% Similarity=-0.093 Sum_probs=70.0
Q ss_pred CHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 004470 605 NAATYNPLIKQHCLRNDMRTTAKIYKGMCAQGITPD----GNTYNILLQGHCKARNMKEAWFLHKEMVQKGFNLTTSSYN 680 (751)
Q Consensus 605 ~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~ 680 (751)
+...+..+...+...|++++|.+.|++.++. .|+ ...+..+...|...|++++|+..++++++..+. +...+.
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~ 103 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALGL--DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGG-DVKALY 103 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSC-CHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH--cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCcc-CHHHHH
Confidence 3445555666666666666666666666653 344 455666667777777777777777777765433 566677
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 004470 681 ALIKGFLKRKKYLEARELFEEMRRGGLVADREIYYFFV 718 (751)
Q Consensus 681 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 718 (751)
.++.++...|++++|...++++++.. +.+...+..+.
T Consensus 104 ~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~ 140 (148)
T 2dba_A 104 RRSQALEKLGRLDQAVLDLQRCVSLE-PKNKVFQEALR 140 (148)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHC-SSCHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHH
Confidence 77777777777777777777777643 33444444433
No 167
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.30 E-value=1.6e-05 Score=71.61 Aligned_cols=102 Identities=9% Similarity=-0.090 Sum_probs=78.0
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 004470 570 SVVTFNVLMNGFCMSGMIEDGEKLLKWMLEKGLKPNAATYNPLIKQHCLRNDMRTTAKIYKGMCAQGITPDGNTYNILLQ 649 (751)
Q Consensus 570 ~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~ 649 (751)
+...+..+...+...|++++|+..|++.++... .+...|..+..+|...|++++|++.+++.++.. +.+...|..+..
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~ 87 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSIAP-ANPIYLSNRAAAYSASGQHEKAAEDAELATVVD-PKYSKAWSRLGL 87 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-cCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 456677777888888888888888888887632 266777788888888888888888888888753 235777888888
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCC
Q 004470 650 GHCKARNMKEAWFLHKEMVQKGFN 673 (751)
Q Consensus 650 ~~~~~g~~~~A~~~~~~~~~~~~~ 673 (751)
+|...|++++|+..|+++++..+.
T Consensus 88 ~~~~~g~~~~A~~~~~~al~~~p~ 111 (164)
T 3sz7_A 88 ARFDMADYKGAKEAYEKGIEAEGN 111 (164)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHSS
T ss_pred HHHHccCHHHHHHHHHHHHHhCCC
Confidence 888888888888888888876443
No 168
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.29 E-value=8.9e-06 Score=70.62 Aligned_cols=100 Identities=10% Similarity=-0.032 Sum_probs=56.8
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 004470 640 DGNTYNILLQGHCKARNMKEAWFLHKEMVQKGFNLTTSSYNALIKGFLKRKKYLEARELFEEMRRGGLVADREIYYFFVD 719 (751)
Q Consensus 640 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 719 (751)
+...+..+...+...|++++|+..|+++++..+. +...|..++.++...|++++|+..++++++.+ +.+...+..++.
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 85 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPL-VAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQ 85 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcC-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-chhHHHHHHHHH
Confidence 4455555555556666666666666665555433 45555555666666666666666666655543 334555555555
Q ss_pred HHHhcCChhHHHHHHHHHHHcC
Q 004470 720 INFEEGNTEITLELCDAAIECY 741 (751)
Q Consensus 720 ~~~~~g~~~~A~~~~~~~~~~~ 741 (751)
++...|++++|++.++++++..
T Consensus 86 ~~~~~~~~~~A~~~~~~a~~~~ 107 (137)
T 3q49_B 86 CQLEMESYDEAIANLQRAYSLA 107 (137)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHHHC
Confidence 6666666666666666555543
No 169
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.28 E-value=1.2e-05 Score=68.95 Aligned_cols=94 Identities=11% Similarity=0.020 Sum_probs=63.6
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC---HHHHHHHH
Q 004470 610 NPLIKQHCLRNDMRTTAKIYKGMCAQGITPDG---NTYNILLQGHCKARNMKEAWFLHKEMVQKGFNLT---TSSYNALI 683 (751)
Q Consensus 610 ~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~---~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~---~~~~~~l~ 683 (751)
..+...+...|++++|.+.|+++++... .+. ..+..+...+.+.|++++|+..++++++..+. + +..+..++
T Consensus 6 ~~~a~~~~~~~~~~~A~~~~~~~~~~~p-~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~~~~la 83 (129)
T 2xev_A 6 YNVAFDALKNGKYDDASQLFLSFLELYP-NGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPT-HDKAAGGLLKLG 83 (129)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCS-SSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-STTHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHCC-CCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCC-CcccHHHHHHHH
Confidence 3455566677777777777777776431 122 45666677777777777777777777775443 3 55666777
Q ss_pred HHHHhcCCHHHHHHHHHHHHHC
Q 004470 684 KGFLKRKKYLEARELFEEMRRG 705 (751)
Q Consensus 684 ~~~~~~g~~~~A~~~~~~~~~~ 705 (751)
.++...|++++|...|+++++.
T Consensus 84 ~~~~~~g~~~~A~~~~~~~~~~ 105 (129)
T 2xev_A 84 LSQYGEGKNTEAQQTLQQVATQ 105 (129)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHH
Confidence 7777777777777777777764
No 170
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.26 E-value=1.6e-05 Score=69.91 Aligned_cols=103 Identities=9% Similarity=-0.097 Sum_probs=90.7
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 004470 639 PDGNTYNILLQGHCKARNMKEAWFLHKEMVQKGFNLT---TSSYNALIKGFLKRKKYLEARELFEEMRRGGLVADREIYY 715 (751)
Q Consensus 639 p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 715 (751)
.+...+..+...+...|++++|+..|+++++..+. + ...+..++..|...|++++|+..++++++.. +.+...+.
T Consensus 26 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~ 103 (148)
T 2dba_A 26 SSVEQLRKEGNELFKCGDYGGALAAYTQALGLDAT-PQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKD-GGDVKALY 103 (148)
T ss_dssp CCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCC-HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-SCCHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHccc-chHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-ccCHHHHH
Confidence 35778888999999999999999999999986433 2 6788999999999999999999999999864 55788899
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHcCCC
Q 004470 716 FFVDINFEEGNTEITLELCDAAIECYLV 743 (751)
Q Consensus 716 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 743 (751)
.++.++...|++++|.+.++++++....
T Consensus 104 ~~a~~~~~~~~~~~A~~~~~~al~~~p~ 131 (148)
T 2dba_A 104 RRSQALEKLGRLDQAVLDLQRCVSLEPK 131 (148)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHCSS
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCC
Confidence 9999999999999999999999987643
No 171
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.25 E-value=7.5e-06 Score=67.90 Aligned_cols=100 Identities=16% Similarity=0.144 Sum_probs=50.8
Q ss_pred ChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCccCHHhHHHHHHHHHhCCCCHHHHHHHHHhchhcCCC-cCHHHHHHH
Q 004470 184 DPHVFDIFFQVLVEARKLNEARKLFEKLLNYGLVISVDSCNLFLSRLSNTCDGLRMVVKSFTEFPELGIC-WNTASYNIM 262 (751)
Q Consensus 184 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~l~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l 262 (751)
++.++..++.++.+.|++++|...|+++++. .|+.......++.++...|++++|.+.|+++.+..+. .+...+..+
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l 82 (112)
T 2kck_A 5 NPEEYYLEGVLQYDAGNYTESIDLFEKAIQL--DPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAK 82 (112)
T ss_dssp STTGGGGHHHHHHSSCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHH
T ss_pred cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh--CcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHH
Confidence 3444455555555555555555555555544 2332222233333333455555555555555554321 034555556
Q ss_pred HHHHHhc-CCHHHHHHHHHHHHhc
Q 004470 263 IHCLCRF-GKIKEAHLLLLQMELR 285 (751)
Q Consensus 263 i~~~~~~-g~~~~A~~~~~~m~~~ 285 (751)
...+.+. |++++|.+.+++....
T Consensus 83 ~~~~~~~~~~~~~A~~~~~~~~~~ 106 (112)
T 2kck_A 83 ADALRYIEGKEVEAEIAEARAKLE 106 (112)
T ss_dssp HHHHTTCSSCSHHHHHHHHHHGGG
T ss_pred HHHHHHHhCCHHHHHHHHHHHhhc
Confidence 6666666 6666666666665554
No 172
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.25 E-value=9.2e-06 Score=69.57 Aligned_cols=112 Identities=11% Similarity=0.103 Sum_probs=75.4
Q ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC--CC----HHHHH
Q 004470 607 ATYNPLIKQHCLRNDMRTTAKIYKGMCAQGITPDGNTYNILLQGHCKARNMKEAWFLHKEMVQKGFN--LT----TSSYN 680 (751)
Q Consensus 607 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~--p~----~~~~~ 680 (751)
..+..+...+...|++++|...+++..+.. +.+...+..+...+...|++++|...++++.+..+. ++ ..++.
T Consensus 5 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (131)
T 1elr_A 5 LKEKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYA 83 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHH
Confidence 345556666677777777777777776643 335666777777777777888887777777765321 12 56777
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 004470 681 ALIKGFLKRKKYLEARELFEEMRRGGLVADREIYYFFVDIN 721 (751)
Q Consensus 681 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 721 (751)
.++..+...|++++|.+.++++.+. .|+......+..+.
T Consensus 84 ~la~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~ 122 (131)
T 1elr_A 84 RIGNSYFKEEKYKDAIHFYNKSLAE--HRTPDVLKKCQQAE 122 (131)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH--CCCHHHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHh--CCCHHHHHHHHHHH
Confidence 7788888888888888888888774 34665555554443
No 173
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.25 E-value=8.4e-06 Score=69.80 Aligned_cols=101 Identities=13% Similarity=0.097 Sum_probs=87.7
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC--CCC----HHHH
Q 004470 641 GNTYNILLQGHCKARNMKEAWFLHKEMVQKGFNLTTSSYNALIKGFLKRKKYLEARELFEEMRRGGL--VAD----REIY 714 (751)
Q Consensus 641 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~~~----~~~~ 714 (751)
...+..+...+...|++++|+..++++++..+. +...+..++..+...|++++|...++++.+... .++ ...+
T Consensus 4 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (131)
T 1elr_A 4 ALKEKELGNDAYKKKDFDTALKHYDKAKELDPT-NMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAY 82 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHH
Confidence 456778889999999999999999999987644 788999999999999999999999999988531 222 7788
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHcCC
Q 004470 715 YFFVDINFEEGNTEITLELCDAAIECYL 742 (751)
Q Consensus 715 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 742 (751)
..++..+...|++++|.+.++++++...
T Consensus 83 ~~la~~~~~~~~~~~A~~~~~~~~~~~~ 110 (131)
T 1elr_A 83 ARIGNSYFKEEKYKDAIHFYNKSLAEHR 110 (131)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHhCC
Confidence 8999999999999999999999998754
No 174
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.24 E-value=5e-06 Score=74.33 Aligned_cols=134 Identities=12% Similarity=0.030 Sum_probs=86.4
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CC----HH
Q 004470 608 TYNPLIKQHCLRNDMRTTAKIYKGMCAQGI-TPD----GNTYNILLQGHCKARNMKEAWFLHKEMVQKGFN-LT----TS 677 (751)
Q Consensus 608 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~-~p~----~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~-p~----~~ 677 (751)
++..+...+...|++++|.+.+++.++... .++ ..++..+...+...|++++|...++++.+.... .+ ..
T Consensus 11 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 90 (164)
T 3ro3_A 11 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQ 90 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHH
Confidence 344445555555555555555555543210 011 235666777777888888888888776653111 11 34
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHHcC
Q 004470 678 SYNALIKGFLKRKKYLEARELFEEMRRG----GLVA-DREIYYFFVDINFEEGNTEITLELCDAAIECY 741 (751)
Q Consensus 678 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 741 (751)
.+..++..+...|++++|...++++++. +.++ ....+..++..+...|++++|.+.++++++..
T Consensus 91 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 159 (164)
T 3ro3_A 91 SCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEIS 159 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHH
Confidence 6777888888888888888888887752 1111 13556778888899999999999999888754
No 175
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=98.24 E-value=1e-05 Score=71.02 Aligned_cols=98 Identities=10% Similarity=-0.025 Sum_probs=66.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC------C-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-------
Q 004470 644 YNILLQGHCKARNMKEAWFLHKEMVQKGFNL------T-----TSSYNALIKGFLKRKKYLEARELFEEMRRG------- 705 (751)
Q Consensus 644 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p------~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~------- 705 (751)
+......+.+.|++++|+..|+++++..+.. + ...|..+..++.+.|++++|+..++++++.
T Consensus 14 ~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~ 93 (159)
T 2hr2_A 14 ALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGEL 93 (159)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCT
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccC
Confidence 3444555566666666666666666643331 2 227777777788888888888888877774
Q ss_pred CCCCCHHHH----HHHHHHHHhcCChhHHHHHHHHHHHcCC
Q 004470 706 GLVADREIY----YFFVDINFEEGNTEITLELCDAAIECYL 742 (751)
Q Consensus 706 ~~~~~~~~~----~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 742 (751)
. +.+...| +..+.++...|++++|++.|+++++...
T Consensus 94 ~-pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p 133 (159)
T 2hr2_A 94 N-QDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIE 133 (159)
T ss_dssp T-STHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred C-CchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCC
Confidence 3 3345666 7777888888888888888888877643
No 176
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.21 E-value=4.5e-05 Score=81.13 Aligned_cols=183 Identities=11% Similarity=0.039 Sum_probs=107.5
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHcCCCCCchhhh-HHHHHHHHHhhhcCCCChhhHHHHHHHHHhcCChhHHHHHH
Q 004470 130 EARCIVVQISVAAKDLKTAHGLIHDFWAKPNLDASIAF-THFVERLIYTYKDWGSDPHVFDIFFQVLVEARKLNEARKLF 208 (751)
Q Consensus 130 ~~~~~~~~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 208 (751)
.+...-++.+...|++++|...+..++........... ....... .+....++..|+.+|...|++++|.+.+
T Consensus 5 ~~~l~~a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~------~~~~~~al~~l~~~y~~~~~~~~a~~~~ 78 (434)
T 4b4t_Q 5 GSKLEEARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKR------RNEQETSILELGQLYVTMGAKDKLREFI 78 (434)
T ss_dssp THHHHHHHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHH------HHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHH------hhhHHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 34455677888899999999999999876422111000 0000000 0001135678999999999999999999
Q ss_pred HHHHhCC-CccC---HHhHHHHHHHHHhCCCCHHHHHHHHHhchhc----CCCcC-HHHHHHHHHHHHhcCCHHHHHHHH
Q 004470 209 EKLLNYG-LVIS---VDSCNLFLSRLSNTCDGLRMVVKSFTEFPEL----GICWN-TASYNIMIHCLCRFGKIKEAHLLL 279 (751)
Q Consensus 209 ~~~~~~g-~~p~---~~~~~~ll~~l~~~~~~~~~a~~~~~~~~~~----~~~~~-~~~~~~li~~~~~~g~~~~A~~~~ 279 (751)
.++.+.- ..++ .......++.+....|+++.|..++.+.... +..+. ..++..|+..|...|++++|..++
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l 158 (434)
T 4b4t_Q 79 PHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALI 158 (434)
T ss_dssp HHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHH
Confidence 9887531 1111 1233445666666667888888887776432 11111 345566677777777777777776
Q ss_pred HHHHhc--CC--CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 004470 280 LQMELR--GC--SP-DVVSFSTIINGYCYLGELQRVLKLIEEMQ 318 (751)
Q Consensus 280 ~~m~~~--g~--~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 318 (751)
++.... +. .+ ....|..++..|...|++++|...+++..
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al 202 (434)
T 4b4t_Q 159 NDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAAR 202 (434)
T ss_dssp HHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHH
Confidence 665431 11 11 13345555666666666666666665554
No 177
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.20 E-value=1.2e-05 Score=86.20 Aligned_cols=139 Identities=6% Similarity=-0.116 Sum_probs=64.7
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 004470 570 SVVTFNVLMNGFCMSGMIEDGEKLLKWMLEKGLKPNAATYNPLIKQHCLRNDMRTTAKIYKGMCAQGITPDGNTYNILLQ 649 (751)
Q Consensus 570 ~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~ 649 (751)
....+..+...+.+.|++++|...|++.++....... + .-+... +... -....|..+..
T Consensus 267 ~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~--~-----------~~~~~~----~~~~----~~~~~~~nla~ 325 (457)
T 1kt0_A 267 QAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYG--L-----------SEKESK----ASES----FLLAAFLNLAM 325 (457)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCS--C-----------CHHHHH----HHHH----HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhccccc--C-----------ChHHHH----HHHH----HHHHHHHHHHH
Confidence 3445666666677777777777777776654211110 0 000000 0000 00234444555
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhH
Q 004470 650 GHCKARNMKEAWFLHKEMVQKGFNLTTSSYNALIKGFLKRKKYLEARELFEEMRRGGLVADREIYYFFVDINFEEGNTEI 729 (751)
Q Consensus 650 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 729 (751)
+|.+.|++++|+..++++++..+. +...|..++.+|...|++++|+..|+++++.. +.+...+..+..++.+.|+.++
T Consensus 326 ~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~~~~~~~~~~ 403 (457)
T 1kt0_A 326 CYLKLREYTKAVECCDKALGLDSA-NEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN-PQNKAARLQISMCQKKAKEHNE 403 (457)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-----CHHHHHHHHHHHHHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHH
Confidence 555555555555555555554333 44455555555555555555555555555432 2233444445555555555444
Q ss_pred HH
Q 004470 730 TL 731 (751)
Q Consensus 730 A~ 731 (751)
|.
T Consensus 404 a~ 405 (457)
T 1kt0_A 404 RD 405 (457)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 178
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.18 E-value=1.1e-05 Score=72.61 Aligned_cols=100 Identities=13% Similarity=0.069 Sum_probs=81.2
Q ss_pred HhhHHHHHHHHHHcCCHHHHHHHHHHHHHC--------CC--------CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 004470 606 AATYNPLIKQHCLRNDMRTTAKIYKGMCAQ--------GI--------TP-DGNTYNILLQGHCKARNMKEAWFLHKEMV 668 (751)
Q Consensus 606 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~--------g~--------~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 668 (751)
...+......+.+.|++++|++.|.+.++. .. .| +...|..+..+|.+.|++++|+..+++++
T Consensus 11 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al 90 (162)
T 3rkv_A 11 VEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVL 90 (162)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 456777888889999999999999988874 00 12 24568888888999999999999999998
Q ss_pred HCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 004470 669 QKGFNLTTSSYNALIKGFLKRKKYLEARELFEEMRRGG 706 (751)
Q Consensus 669 ~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 706 (751)
+.++. +...|..++.+|...|++++|...|+++++..
T Consensus 91 ~~~p~-~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~ 127 (162)
T 3rkv_A 91 KREET-NEKALFRRAKARIAAWKLDEAEEDLKLLLRNH 127 (162)
T ss_dssp HHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred hcCCc-chHHHHHHHHHHHHHhcHHHHHHHHHHHHhcC
Confidence 87655 77888889999999999999999999988863
No 179
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.18 E-value=8.4e-06 Score=69.21 Aligned_cols=96 Identities=11% Similarity=-0.088 Sum_probs=79.2
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhCCCccCHHhHHHHHHHHHhCCCCHHHHHHHHHhchhcCCCcCHHHHHHHHHHH
Q 004470 187 VFDIFFQVLVEARKLNEARKLFEKLLNYGLVISVDSCNLFLSRLSNTCDGLRMVVKSFTEFPELGICWNTASYNIMIHCL 266 (751)
Q Consensus 187 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 266 (751)
.+..++..+.+.|++++|+..|+++++. .|+.......++.++...|++++|+..|+++++..+. +...+..+..+|
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~-~~~~~~~la~~~ 95 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQK--EPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPK-DIAVHAALAVSH 95 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHH
Confidence 4667888999999999999999999987 6776666667777777788999999999988888665 677888888888
Q ss_pred HhcCCHHHHHHHHHHHHhc
Q 004470 267 CRFGKIKEAHLLLLQMELR 285 (751)
Q Consensus 267 ~~~g~~~~A~~~~~~m~~~ 285 (751)
.+.|++++|+..|++..+.
T Consensus 96 ~~~g~~~~A~~~~~~al~~ 114 (121)
T 1hxi_A 96 TNEHNANAALASLRAWLLS 114 (121)
T ss_dssp HHHHHHHHHHHHHHHHHC-
T ss_pred HHcCCHHHHHHHHHHHHHh
Confidence 8888899998888887764
No 180
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.15 E-value=3.9e-06 Score=70.82 Aligned_cols=86 Identities=13% Similarity=0.001 Sum_probs=59.9
Q ss_pred cCCHHHHHHHHHHHHHCCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 004470 619 RNDMRTTAKIYKGMCAQGI--TPDGNTYNILLQGHCKARNMKEAWFLHKEMVQKGFNLTTSSYNALIKGFLKRKKYLEAR 696 (751)
Q Consensus 619 ~g~~~~A~~~~~~m~~~g~--~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~ 696 (751)
.|++++|+..|++.++.+. +.+...+..+...|...|++++|+..++++++..+. +...+..++.++.+.|++++|+
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPN-HQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-chHHHHHHHHHHHHcCCHHHHH
Confidence 4667777777777776431 123556777777788888888888888888777555 6777777888888888888888
Q ss_pred HHHHHHHHC
Q 004470 697 ELFEEMRRG 705 (751)
Q Consensus 697 ~~~~~~~~~ 705 (751)
..++++++.
T Consensus 82 ~~~~~al~~ 90 (117)
T 3k9i_A 82 ELLLKIIAE 90 (117)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 888887774
No 181
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=98.14 E-value=6.8e-05 Score=65.22 Aligned_cols=111 Identities=11% Similarity=0.090 Sum_probs=67.8
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHH
Q 004470 620 NDMRTTAKIYKGMCAQGITPDGNTYNILLQGHCKARNMKEAWFLHKEMVQKGFNLTTSSYNALIKGFLK----RKKYLEA 695 (751)
Q Consensus 620 g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A 695 (751)
++.++|.++|++..+.| .|+.. |...|...+..++|++.|++..+.| ++..+..|...|.. .+++++|
T Consensus 9 ~d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A 80 (138)
T 1klx_A 9 KDLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKA 80 (138)
T ss_dssp HHHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHH
T ss_pred cCHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHH
Confidence 34566666666666655 22322 5555555556666666666666654 55666666666665 5666666
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCChhHHHHHHHHHHHcC
Q 004470 696 RELFEEMRRGGLVADREIYYFFVDINFE----EGNTEITLELCDAAIECY 741 (751)
Q Consensus 696 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~ 741 (751)
+++|+++.+.| ++..+..++..|.. .++.++|+++++++.+.|
T Consensus 81 ~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 81 AQYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp HHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 66666666653 45556666666666 666667777776666655
No 182
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.13 E-value=3.5e-06 Score=71.16 Aligned_cols=90 Identities=14% Similarity=0.085 Sum_probs=75.0
Q ss_pred hcCCHHHHHHHHHHHHHCCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHH
Q 004470 653 KARNMKEAWFLHKEMVQKGF--NLTTSSYNALIKGFLKRKKYLEARELFEEMRRGGLVADREIYYFFVDINFEEGNTEIT 730 (751)
Q Consensus 653 ~~g~~~~A~~~~~~~~~~~~--~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 730 (751)
..|++++|+..|+++++.+. +.+...+..++.+|...|++++|+..++++++.. +.+...+..++.++.+.|++++|
T Consensus 2 ~~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A 80 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQF-PNHQALRVFYAMVLYNLGRYEQG 80 (117)
T ss_dssp -----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHH
T ss_pred CCCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHcCCHHHH
Confidence 46899999999999998741 2256789999999999999999999999999975 66789999999999999999999
Q ss_pred HHHHHHHHHcCCC
Q 004470 731 LELCDAAIECYLV 743 (751)
Q Consensus 731 ~~~~~~~~~~~~~ 743 (751)
++.++++++....
T Consensus 81 ~~~~~~al~~~p~ 93 (117)
T 3k9i_A 81 VELLLKIIAETSD 93 (117)
T ss_dssp HHHHHHHHHHHCC
T ss_pred HHHHHHHHHhCCC
Confidence 9999999987544
No 183
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.12 E-value=6.6e-06 Score=88.60 Aligned_cols=119 Identities=9% Similarity=0.011 Sum_probs=86.4
Q ss_pred HHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH
Q 004470 614 KQHCLRNDMRTTAKIYKGMCAQGITPDGNTYNILLQGHCKARNMKEAWFLHKEMVQKGFNLTTSSYNALIKGFLKRKKYL 693 (751)
Q Consensus 614 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~ 693 (751)
..+...|++++|.+.+++.++.. +.+...|..+..+|.+.|++++|++.++++++..+. +...|..++.+|.+.|+++
T Consensus 14 ~~~~~~g~~~~A~~~~~~Al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~-~~~~~~~lg~~~~~~g~~~ 91 (477)
T 1wao_1 14 NDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKK-YIKGYYRRAASNMALGKFR 91 (477)
T ss_dssp SSTTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTT-CHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHH
Confidence 34556788888888888887742 235777888888888888888888888888887554 6778888888888888888
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHH--HHhcCChhHHHHHHH
Q 004470 694 EARELFEEMRRGGLVADREIYYFFVDI--NFEEGNTEITLELCD 735 (751)
Q Consensus 694 ~A~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~g~~~~A~~~~~ 735 (751)
+|++.++++++.. +.+...+..+..+ +.+.|++++|++.++
T Consensus 92 eA~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 92 AALRDYETVVKVK-PHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHHHS-TTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 8888888888753 3344555555555 777888888888877
No 184
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=98.10 E-value=2.5e-05 Score=80.93 Aligned_cols=91 Identities=11% Similarity=-0.020 Sum_probs=76.5
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 004470 640 DGNTYNILLQGHCKARNMKEAWFLHKEMVQKGFNLTTSSYNALIKGFLKRKKYLEARELFEEMRRGGLVADREIYYFFVD 719 (751)
Q Consensus 640 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 719 (751)
+...|..+..+|.+.|++++|+..++++++..+. +...|..++.+|...|++++|++.|+++++.. +.+...+..+..
T Consensus 272 ~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~-P~~~~~~~~l~~ 349 (370)
T 1ihg_A 272 ALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPS-NTKALYRRAQGWQGLKEYDQALADLKKAQEIA-PEDKAIQAELLK 349 (370)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCch-hHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 4567888889999999999999999999987654 78889999999999999999999999998864 557778888888
Q ss_pred HHHhcCChhHHHH
Q 004470 720 INFEEGNTEITLE 732 (751)
Q Consensus 720 ~~~~~g~~~~A~~ 732 (751)
++...++.+++.+
T Consensus 350 ~~~~~~~~~~a~k 362 (370)
T 1ihg_A 350 VKQKIKAQKDKEK 362 (370)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 8888888777754
No 185
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.10 E-value=1.8e-05 Score=70.53 Aligned_cols=131 Identities=13% Similarity=0.025 Sum_probs=76.4
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHcCCC-CC----HhhHHHHHHHHHHcCCHHHHHHHHHHHHHC----CCCC-CHHH
Q 004470 574 FNVLMNGFCMSGMIEDGEKLLKWMLEKGLK-PN----AATYNPLIKQHCLRNDMRTTAKIYKGMCAQ----GITP-DGNT 643 (751)
Q Consensus 574 ~~~li~~~~~~g~~~~A~~l~~~~~~~g~~-p~----~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~----g~~p-~~~~ 643 (751)
+..+...+...|++++|...+++..+.... ++ ..++..+...+...|++++|.+.+++..+. +..+ ....
T Consensus 12 ~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 91 (164)
T 3ro3_A 12 FGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQS 91 (164)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHH
Confidence 344444444455555555555444432100 01 124455555566666666666666665541 1001 1345
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHC----CCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004470 644 YNILLQGHCKARNMKEAWFLHKEMVQK----GFN-LTTSSYNALIKGFLKRKKYLEARELFEEMRR 704 (751)
Q Consensus 644 ~~~li~~~~~~g~~~~A~~~~~~~~~~----~~~-p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 704 (751)
+..+...+...|++++|...+++.++. +.. .....+..+...+...|++++|.+.+++.++
T Consensus 92 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 92 CYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 157 (164)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 667777778888888888888877653 111 1134677788888888999999888888775
No 186
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.07 E-value=4.8e-05 Score=65.01 Aligned_cols=28 Identities=14% Similarity=0.163 Sum_probs=15.0
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 004470 187 VFDIFFQVLVEARKLNEARKLFEKLLNY 214 (751)
Q Consensus 187 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 214 (751)
++..++.++.+.|++++|...|+++++.
T Consensus 41 ~~~~lg~~~~~~~~~~~A~~~~~~~~~~ 68 (129)
T 2xev_A 41 ALYWLGESYYATRNFQLAEAQFRDLVSR 68 (129)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 4445555555555555555555555544
No 187
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.07 E-value=2.5e-05 Score=70.24 Aligned_cols=102 Identities=10% Similarity=0.010 Sum_probs=79.8
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHc--------CC---------CCCHhhHHHHHHHHHHcCCHHHHHHHHHHHH
Q 004470 571 VVTFNVLMNGFCMSGMIEDGEKLLKWMLEK--------GL---------KPNAATYNPLIKQHCLRNDMRTTAKIYKGMC 633 (751)
Q Consensus 571 ~~~~~~li~~~~~~g~~~~A~~l~~~~~~~--------g~---------~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 633 (751)
...+......+.+.|++++|+..|.+.+.. .. +.+...|..+..+|...|++++|+..+++.+
T Consensus 11 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al 90 (162)
T 3rkv_A 11 VEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVL 90 (162)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 456777888888899999999999888764 00 1123567788888889999999999999888
Q ss_pred HCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 004470 634 AQGITPDGNTYNILLQGHCKARNMKEAWFLHKEMVQKGFN 673 (751)
Q Consensus 634 ~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~ 673 (751)
+.+ +.+...|..+..+|...|++++|+..|+++++..+.
T Consensus 91 ~~~-p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~ 129 (162)
T 3rkv_A 91 KRE-ETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPA 129 (162)
T ss_dssp HHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGG
T ss_pred hcC-CcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCC
Confidence 853 336778888889999999999999999998887543
No 188
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=98.06 E-value=7.3e-06 Score=83.97 Aligned_cols=152 Identities=11% Similarity=-0.033 Sum_probs=84.8
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 004470 571 VVTFNVLMNGFCMSGMIEDGEKLLKWMLEKGLKPNAATYNPLIKQHCLRNDMRTTAKIYKGMCAQGITPDGNTYNILLQG 650 (751)
Q Consensus 571 ~~~~~~li~~~~~~g~~~~A~~l~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~ 650 (751)
...+..+...+.+.|++++|...|++.+.. .|+... +...|+.+++...+. ...|..+..+
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~-------~~~~~~~~~~~~~l~----------~~~~~nla~~ 239 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAY--MGDDFM-------FQLYGKYQDMALAVK----------NPCHLNIAAC 239 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHH--SCHHHH-------HTCCHHHHHHHHHHH----------THHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--hccchh-------hhhcccHHHHHHHHH----------HHHHHHHHHH
Confidence 455666777777788888888888887764 333321 112233333332221 1367888999
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH-HHhcCChhH
Q 004470 651 HCKARNMKEAWFLHKEMVQKGFNLTTSSYNALIKGFLKRKKYLEARELFEEMRRGGLVADREIYYFFVDI-NFEEGNTEI 729 (751)
Q Consensus 651 ~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~~~~ 729 (751)
|.+.|++++|+..++++++..+. +...|..++.+|...|++++|+..|+++++.. +.+...+..+... ....+..++
T Consensus 240 ~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~-p~~~~a~~~L~~l~~~~~~~~~~ 317 (338)
T 2if4_A 240 LIKLKRYDEAIGHCNIVLTEEEK-NPKALFRRGKAKAELGQMDSARDDFRKAQKYA-PDDKAIRRELRALAEQEKALYQK 317 (338)
T ss_dssp HHTTTCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTTTCHHHHHHHHHHTTC--------------------------
T ss_pred HHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999987654 78899999999999999999999999998753 3455666666665 345577888
Q ss_pred HHHHHHHHHHcCCC
Q 004470 730 TLELCDAAIECYLV 743 (751)
Q Consensus 730 A~~~~~~~~~~~~~ 743 (751)
+.+.|+++++....
T Consensus 318 a~~~~~~~l~~~p~ 331 (338)
T 2if4_A 318 QKEMYKGIFKGKDE 331 (338)
T ss_dssp --------------
T ss_pred HHHHHHHhhCCCCC
Confidence 99999999877644
No 189
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.04 E-value=0.00013 Score=79.83 Aligned_cols=173 Identities=10% Similarity=0.032 Sum_probs=131.1
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC----------hhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHHcC-
Q 004470 552 MVKAHELLRDMLDKGLQPSVVTFNVLMNGFCMSGM----------IEDGEKLLKWMLEKGLKPNAATYNPLIKQHCLRN- 620 (751)
Q Consensus 552 ~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~----------~~~A~~l~~~~~~~g~~p~~~~~~~l~~~~~~~g- 620 (751)
.++|.+.+++++..+ +.+..+|+.--..+...|+ ++++++.++.+.+...+ +..+|..-...+.+.+
T Consensus 45 ~eeal~~~~~~l~~n-P~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK-~y~aW~hR~w~l~~l~~ 122 (567)
T 1dce_A 45 DESVLELTSQILGAN-PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPK-SYGTWHHRCWLLSRLPE 122 (567)
T ss_dssp SHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTCSS
T ss_pred CHHHHHHHHHHHHHC-chhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHccc
Confidence 456777777777654 4456667666666666666 78888888888876433 6677777777777778
Q ss_pred -CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc---------
Q 004470 621 -DMRTTAKIYKGMCAQGITPDGNTYNILLQGHCKAR-NMKEAWFLHKEMVQKGFNLTTSSYNALIKGFLKR--------- 689 (751)
Q Consensus 621 -~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g-~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~--------- 689 (751)
+++++++.++++++.+ +-|...|+.-...+.+.| .++++++.++++++.++. +...|+.....+.+.
T Consensus 123 ~~~~~el~~~~k~l~~d-~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~-n~saW~~r~~ll~~l~~~~~~~~~ 200 (567)
T 1dce_A 123 PNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS-NYSSWHYRSCLLPQLHPQPDSGPQ 200 (567)
T ss_dssp CCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCC-CHHHHHHHHHHHHHHSCCCCSSSC
T ss_pred ccHHHHHHHHHHHHhhc-cccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCC-CccHHHHHHHHHHhhccccccccc
Confidence 6788888888888864 336777888777788888 888999999998888766 888888887777663
Q ss_pred -----CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhH
Q 004470 690 -----KKYLEARELFEEMRRGGLVADREIYYFFVDINFEEGNTEI 729 (751)
Q Consensus 690 -----g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 729 (751)
+.+++|++.+++++... |.|...|..+...+.+.|+.++
T Consensus 201 ~~~~~~~~~eel~~~~~ai~~~-P~~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 201 GRLPENVLLKELELVQNAFFTD-PNDQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp CSSCHHHHHHHHHHHHHHHHHC-SSCSHHHHHHHHHHSCCCCCSC
T ss_pred ccccHHHHHHHHHHHHHHHhhC-CCCccHHHHHHHHHhcCCCccc
Confidence 56799999999999865 6678888888888888777554
No 190
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.04 E-value=3.5e-06 Score=90.29 Aligned_cols=155 Identities=8% Similarity=-0.069 Sum_probs=96.2
Q ss_pred HHHHHHHhhhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHcCCCCCchhhhHHHHHHHHHhhhcCCCChhhHHHHH
Q 004470 113 LVLDFFDWACLRREPILEARCIVVQISVAAKDLKTAHGLIHDFWAKPNLDASIAFTHFVERLIYTYKDWGSDPHVFDIFF 192 (751)
Q Consensus 113 ~al~~f~~~~~~~~~~~~~~~~~~~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~ 192 (751)
.|+..|+.+....+....++..++..+...|++++|...+.+++........... .....+ . +....+|..++
T Consensus 252 ~A~~~~~~~~~~~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~-~~~~~~-~-----~~~~~~~~nla 324 (457)
T 1kt0_A 252 KAKESWEMDTKEKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSE-KESKAS-E-----SFLLAAFLNLA 324 (457)
T ss_dssp CCCCGGGSCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCH-HHHHHH-H-----HHHHHHHHHHH
T ss_pred cCcchhhcCHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCCh-HHHHHH-H-----HHHHHHHHHHH
Confidence 3444444444334455667888999999999999999999999875311100000 000000 0 01145778888
Q ss_pred HHHHhcCChhHHHHHHHHHHhCCCccCHHhHHHHHHHHHhCCCCHHHHHHHHHhchhcCCCcCHHHHHHHHHHHHhcCCH
Q 004470 193 QVLVEARKLNEARKLFEKLLNYGLVISVDSCNLFLSRLSNTCDGLRMVVKSFTEFPELGICWNTASYNIMIHCLCRFGKI 272 (751)
Q Consensus 193 ~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 272 (751)
.+|.+.|++++|+..|+++++. .|+.......++.++...|++++|+..|+++.+..+. +..++..+..++.+.|+.
T Consensus 325 ~~~~~~g~~~~A~~~~~~al~~--~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~-~~~a~~~l~~~~~~~~~~ 401 (457)
T 1kt0_A 325 MCYLKLREYTKAVECCDKALGL--DSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQ-NKAARLQISMCQKKAKEH 401 (457)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-----CHHHHHHHHHHHHHHH
T ss_pred HHHHHhcCHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHH
Confidence 8888888888888888888876 4554444444444444667777777777777776544 555666666667666666
Q ss_pred HHHHH
Q 004470 273 KEAHL 277 (751)
Q Consensus 273 ~~A~~ 277 (751)
++|..
T Consensus 402 ~~a~~ 406 (457)
T 1kt0_A 402 NERDR 406 (457)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 66553
No 191
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.02 E-value=3e-05 Score=83.46 Aligned_cols=115 Identities=8% Similarity=-0.083 Sum_probs=83.9
Q ss_pred hcCChHHHHHHHHhhhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHcCCCCCchhhhHHHHHHHHHhhhcCCCChh
Q 004470 107 IRSDYRLVLDFFDWACLRREPILEARCIVVQISVAAKDLKTAHGLIHDFWAKPNLDASIAFTHFVERLIYTYKDWGSDPH 186 (751)
Q Consensus 107 ~~~~~~~al~~f~~~~~~~~~~~~~~~~~~~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 186 (751)
.+++++.|+..|+.+....|.+..++..++..+...|++++|...++++++.. |.++.
T Consensus 18 ~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~----------------------p~~~~ 75 (477)
T 1wao_1 18 KAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELD----------------------KKYIK 75 (477)
T ss_dssp TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC----------------------TTCHH
T ss_pred HhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC----------------------CCCHH
Confidence 35788888888888888888888888888888888888888888888888765 56677
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhCCCccCHHhHHHHHHHH--HhCCCCHHHHHHHHH
Q 004470 187 VFDIFFQVLVEARKLNEARKLFEKLLNYGLVISVDSCNLFLSRL--SNTCDGLRMVVKSFT 245 (751)
Q Consensus 187 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~l--~~~~~~~~~a~~~~~ 245 (751)
++..++.+|.+.|++++|++.|+++++. .|+.......++.+ ....|++++|++.++
T Consensus 76 ~~~~lg~~~~~~g~~~eA~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 76 GYYRRAASNMALGKFRAALRDYETVVKV--KPHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHH--STTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 8888888888888888888888888876 34443333333333 334577888888887
No 192
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=97.98 E-value=7.7e-05 Score=65.38 Aligned_cols=96 Identities=10% Similarity=-0.017 Sum_probs=72.1
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC------C-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-------
Q 004470 609 YNPLIKQHCLRNDMRTTAKIYKGMCAQGITP------D-----GNTYNILLQGHCKARNMKEAWFLHKEMVQK------- 670 (751)
Q Consensus 609 ~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p------~-----~~~~~~li~~~~~~g~~~~A~~~~~~~~~~------- 670 (751)
+......+...|++++|++.|++.++..... + ...|..+..++.+.|++++|+..+++.++.
T Consensus 14 ~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~ 93 (159)
T 2hr2_A 14 ALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGEL 93 (159)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCT
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccC
Confidence 3344445566666666666666666532110 2 237888899999999999999999999986
Q ss_pred CCCCCHHHH----HHHHHHHHhcCCHHHHHHHHHHHHHC
Q 004470 671 GFNLTTSSY----NALIKGFLKRKKYLEARELFEEMRRG 705 (751)
Q Consensus 671 ~~~p~~~~~----~~l~~~~~~~g~~~~A~~~~~~~~~~ 705 (751)
++. +...| ...+.++...|++++|+..|+++++.
T Consensus 94 ~pd-~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel 131 (159)
T 2hr2_A 94 NQD-EGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEM 131 (159)
T ss_dssp TST-HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CCc-hHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 544 56688 89999999999999999999999873
No 193
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.93 E-value=3.3e-05 Score=82.57 Aligned_cols=97 Identities=9% Similarity=-0.051 Sum_probs=45.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH-----CCCC-C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----CCCCCC
Q 004470 643 TYNILLQGHCKARNMKEAWFLHKEMVQ-----KGFN-L-TTSSYNALIKGFLKRKKYLEARELFEEMRR-----GGLVAD 710 (751)
Q Consensus 643 ~~~~li~~~~~~g~~~~A~~~~~~~~~-----~~~~-p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~~~ 710 (751)
+++.|...|...|++++|..+++++++ .|.. | ...+++.|+..|...|++++|+.+++++++ .| +..
T Consensus 353 ~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG-~~H 431 (490)
T 3n71_A 353 LLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHG-PSH 431 (490)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC-TTS
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhC-CCC
Confidence 345555555555555555555555443 1211 1 123455555555555555555555555543 12 111
Q ss_pred ---HHHHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 004470 711 ---REIYYFFVDINFEEGNTEITLELCDAAIEC 740 (751)
Q Consensus 711 ---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 740 (751)
..+...+..++.+.|.+++|..+|.++.+.
T Consensus 432 p~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~ 464 (490)
T 3n71_A 432 PITKDLEAMRMQTEMELRMFRQNEFMYHKMREA 464 (490)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 122334444555555555555555555543
No 194
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.93 E-value=9.9e-06 Score=67.25 Aligned_cols=95 Identities=13% Similarity=0.072 Sum_probs=74.8
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC------HHH
Q 004470 640 DGNTYNILLQGHCKARNMKEAWFLHKEMVQKGFNLTTSSYNALIKGFLKRKKYLEARELFEEMRRGGLVAD------REI 713 (751)
Q Consensus 640 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~------~~~ 713 (751)
+...+..+...+...|++++|++.|+++++..+. +...+..++.++.+.|++++|++.++++++.. +.+ ...
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~ 80 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQ-NPVGYSNKAMALIKLGEYTQAIQMCQQGLRYT-STAEHVAIRSKL 80 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSC-SSTTSHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCccHHHHHHHH
Confidence 4566777888888999999999999999887654 78888899999999999999999999998753 333 566
Q ss_pred HHHHHHHHHhcCChhHHHHHHHH
Q 004470 714 YYFFVDINFEEGNTEITLELCDA 736 (751)
Q Consensus 714 ~~~l~~~~~~~g~~~~A~~~~~~ 736 (751)
+..++.++...|+.++|++.+++
T Consensus 81 ~~~~~~~~~~~~~~~~a~~~~~~ 103 (111)
T 2l6j_A 81 QYRLELAQGAVGSVQIPVVEVDE 103 (111)
T ss_dssp HHHHHHHHHHHHCCCCCSSSSSS
T ss_pred HHHHHHHHHHHHhHhhhHhHHHH
Confidence 77777778887877777655443
No 195
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=97.88 E-value=0.00013 Score=75.55 Aligned_cols=139 Identities=12% Similarity=0.054 Sum_probs=88.7
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHhCCCccCHHhHHHHHHHHHhCCCCHHHHHHHHHhchhcCCCcCHHHHHHHHHH
Q 004470 186 HVFDIFFQVLVEARKLNEARKLFEKLLNYGLVISVDSCNLFLSRLSNTCDGLRMVVKSFTEFPELGICWNTASYNIMIHC 265 (751)
Q Consensus 186 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 265 (751)
..+..++..+.+.|++++|+..|+++++. .+... . . .. .++..... +.+..+|+.+..+
T Consensus 224 ~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~--~~~~~-------~---~-~~-------~~~~~~~~-~~~~~~~~nla~~ 282 (370)
T 1ihg_A 224 EDLKNIGNTFFKSQNWEMAIKKYTKVLRY--VEGSR-------A---A-AE-------DADGAKLQ-PVALSCVLNIGAC 282 (370)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HHHHH-------H---H-SC-------HHHHGGGH-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHH--hhcCc-------c---c-cC-------hHHHHHHH-HHHHHHHHHHHHH
Confidence 45778999999999999999999999873 11110 0 0 00 11111110 1145566777777
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCHHHH
Q 004470 266 LCRFGKIKEAHLLLLQMELRGCSPDVVSFSTIINGYCYLGELQRVLKLIEEMQIKGLKPNPYTYNSVVRLLCKTSKVVEA 345 (751)
Q Consensus 266 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A 345 (751)
|.+.|++++|+..+++..+... .+...|..+..+|...|++++|++.|++..+.. +.+...+..+...+...++.+++
T Consensus 283 ~~~~g~~~~A~~~~~~al~~~p-~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~-P~~~~~~~~l~~~~~~~~~~~~a 360 (370)
T 1ihg_A 283 KLKMSDWQGAVDSCLEALEIDP-SNTKALYRRAQGWQGLKEYDQALADLKKAQEIA-PEDKAIQAELLKVKQKIKAQKDK 360 (370)
T ss_dssp HHHTTCHHHHHHHHHHHHTTCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccCHHHHHHHHHHHHHhCc-hhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHH
Confidence 7777777777777777766432 356677777777777777777777777776653 22455666666666666666665
Q ss_pred HH
Q 004470 346 ET 347 (751)
Q Consensus 346 ~~ 347 (751)
.+
T Consensus 361 ~k 362 (370)
T 1ihg_A 361 EK 362 (370)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 196
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.88 E-value=6.4e-05 Score=62.89 Aligned_cols=80 Identities=15% Similarity=0.039 Sum_probs=63.9
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 004470 624 TTAKIYKGMCAQGITPDGNTYNILLQGHCKARNMKEAWFLHKEMVQKGFNLTTSSYNALIKGFLKRKKYLEARELFEEMR 703 (751)
Q Consensus 624 ~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 703 (751)
+|++.|++.++.. +.+...+..+...|...|++++|+..++++++..+. +...|..++.+|...|++++|...|++++
T Consensus 3 ~a~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al 80 (115)
T 2kat_A 3 AITERLEAMLAQG-TDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPT-YSVAWKWLGKTLQGQGDRAGARQAWESGL 80 (115)
T ss_dssp CHHHHHHHHHTTT-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4677788887753 336777888888888889999999998888887554 67788888888888899999998888887
Q ss_pred HC
Q 004470 704 RG 705 (751)
Q Consensus 704 ~~ 705 (751)
+.
T Consensus 81 ~~ 82 (115)
T 2kat_A 81 AA 82 (115)
T ss_dssp HH
T ss_pred Hh
Confidence 63
No 197
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=97.88 E-value=0.00045 Score=75.67 Aligned_cols=156 Identities=8% Similarity=-0.076 Sum_probs=129.8
Q ss_pred CChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHHcCC----------HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 004470 585 GMIEDGEKLLKWMLEKGLKPNAATYNPLIKQHCLRND----------MRTTAKIYKGMCAQGITPDGNTYNILLQGHCKA 654 (751)
Q Consensus 585 g~~~~A~~l~~~~~~~g~~p~~~~~~~l~~~~~~~g~----------~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~ 654 (751)
...++|++.++++++.... +..+|+.-...+...|+ ++++++.++++++.. +-+..+|..-...+.+.
T Consensus 43 ~~~eeal~~~~~~l~~nP~-~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~-pK~y~aW~hR~w~l~~l 120 (567)
T 1dce_A 43 ELDESVLELTSQILGANPD-FATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSRL 120 (567)
T ss_dssp CCSHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTC
T ss_pred CCCHHHHHHHHHHHHHCch-hHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHc
Confidence 3456789999999987432 55667777777777777 999999999999864 33788898888889999
Q ss_pred C--CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc-------
Q 004470 655 R--NMKEAWFLHKEMVQKGFNLTTSSYNALIKGFLKRK-KYLEARELFEEMRRGGLVADREIYYFFVDINFEE------- 724 (751)
Q Consensus 655 g--~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~------- 724 (751)
| +++++++.++++++.++. +..+|+.-..++.+.| .++++++.++++++.. +-|...|+.....+.+.
T Consensus 121 ~~~~~~~el~~~~k~l~~d~~-N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~-p~n~saW~~r~~ll~~l~~~~~~~ 198 (567)
T 1dce_A 121 PEPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYSSWHYRSCLLPQLHPQPDSG 198 (567)
T ss_dssp SSCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTT-CCCHHHHHHHHHHHHHHSCCCCSS
T ss_pred ccccHHHHHHHHHHHHhhccc-cccHHHHHHHHHHHcCCChHHHHHHHHHHHHHC-CCCccHHHHHHHHHHhhccccccc
Confidence 9 779999999999999877 8999999999999999 9999999999999875 66888898888877763
Q ss_pred -------CChhHHHHHHHHHHHcCCCC
Q 004470 725 -------GNTEITLELCDAAIECYLVG 744 (751)
Q Consensus 725 -------g~~~~A~~~~~~~~~~~~~~ 744 (751)
+.+++|++.++++++..+..
T Consensus 199 ~~~~~~~~~~~eel~~~~~ai~~~P~~ 225 (567)
T 1dce_A 199 PQGRLPENVLLKELELVQNAFFTDPND 225 (567)
T ss_dssp SCCSSCHHHHHHHHHHHHHHHHHCSSC
T ss_pred ccccccHHHHHHHHHHHHHHHhhCCCC
Confidence 56799999999999876543
No 198
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.87 E-value=0.0004 Score=60.27 Aligned_cols=111 Identities=13% Similarity=0.008 Sum_probs=79.9
Q ss_pred CChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHH
Q 004470 585 GMIEDGEKLLKWMLEKGLKPNAATYNPLIKQHCLRNDMRTTAKIYKGMCAQGITPDGNTYNILLQGHCK----ARNMKEA 660 (751)
Q Consensus 585 g~~~~A~~l~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~----~g~~~~A 660 (751)
++.++|.+.|++..+.| .|+.. +...|...+.+++|.++|++..+.| +...+..|...|.. .+++++|
T Consensus 9 ~d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A 80 (138)
T 1klx_A 9 KDLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKA 80 (138)
T ss_dssp HHHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHH
T ss_pred cCHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHH
Confidence 35667777777777765 22332 5555656666777888888777754 56667777777776 6788888
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCC
Q 004470 661 WFLHKEMVQKGFNLTTSSYNALIKGFLK----RKKYLEARELFEEMRRGG 706 (751)
Q Consensus 661 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~ 706 (751)
++.|++..+.| ++..+..|...|.. .+++++|.++|+++.+.|
T Consensus 81 ~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 81 AQYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp HHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 88888888765 56777778888877 778888888888888766
No 199
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.75 E-value=0.00026 Score=55.86 Aligned_cols=83 Identities=16% Similarity=0.148 Sum_probs=60.8
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 004470 641 GNTYNILLQGHCKARNMKEAWFLHKEMVQKGFNLTTSSYNALIKGFLKRKKYLEARELFEEMRRGGLVADREIYYFFVDI 720 (751)
Q Consensus 641 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 720 (751)
...+..+...+...|++++|+..++++++..+. +...+..++..+.+.|++++|...++++.+.. +.+...+..++.+
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~ 86 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN-NAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAKQNLGNA 86 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCHHHHHHHHHH
Confidence 455667777778888888888888888776543 66777788888888888888888888887754 4566677777766
Q ss_pred HHhcC
Q 004470 721 NFEEG 725 (751)
Q Consensus 721 ~~~~g 725 (751)
+.+.|
T Consensus 87 ~~~~g 91 (91)
T 1na3_A 87 KQKQG 91 (91)
T ss_dssp HHHHC
T ss_pred HHhcC
Confidence 65543
No 200
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=97.69 E-value=8.3e-05 Score=76.01 Aligned_cols=148 Identities=7% Similarity=-0.078 Sum_probs=66.4
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHHHHcCCCCCchhhhHHHHHHHHHhhhcCCCChhhHHHHHHHHHhcCChhHHHHHH
Q 004470 129 LEARCIVVQISVAAKDLKTAHGLIHDFWAKPNLDASIAFTHFVERLIYTYKDWGSDPHVFDIFFQVLVEARKLNEARKLF 208 (751)
Q Consensus 129 ~~~~~~~~~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 208 (751)
...+..++..+...|++++|...+.+++.....+.......-.......+ ...+|..++.+|.+.|++++|+..|
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~l-----~~~~~~nla~~~~~~g~~~~A~~~~ 253 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAV-----KNPCHLNIAACLIKLKRYDEAIGHC 253 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHHHHTCCHHHHHHHHHH-----HTHHHHHHHHHHHTTTCCHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccchhhhhcccHHHHHHHH-----HHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 45577788888999999999999999887541100000000000000000 0125666777777777777777777
Q ss_pred HHHHhCCCccCHHhHHHHHHHHHhCCCCHHHHHHHHHhchhcCCCcCHHHHHHHHHH-HHhcCCHHHHHHHHHHHHh
Q 004470 209 EKLLNYGLVISVDSCNLFLSRLSNTCDGLRMVVKSFTEFPELGICWNTASYNIMIHC-LCRFGKIKEAHLLLLQMEL 284 (751)
Q Consensus 209 ~~~~~~g~~p~~~~~~~ll~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~-~~~~g~~~~A~~~~~~m~~ 284 (751)
+++++. .|+.......++..+...|++++|+..|+++.+..+. +..++..|... ....+..+++..+|..|..
T Consensus 254 ~~al~~--~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~-~~~a~~~L~~l~~~~~~~~~~a~~~~~~~l~ 327 (338)
T 2if4_A 254 NIVLTE--EEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPD-DKAIRRELRALAEQEKALYQKQKEMYKGIFK 327 (338)
T ss_dssp HHHHHH--CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC------------------------------------
T ss_pred HHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 777765 4544433344444444566677777777666665443 34444444443 2233455555555555543
No 201
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.69 E-value=0.00023 Score=76.07 Aligned_cols=123 Identities=11% Similarity=0.035 Sum_probs=78.7
Q ss_pred HhcCChhHHHHHHHHHHHc---CCCCC----HhhHHHHHHHHHHcCCHHHHHHHHHHHHH-----CCC-CCC-HHHHHHH
Q 004470 582 CMSGMIEDGEKLLKWMLEK---GLKPN----AATYNPLIKQHCLRNDMRTTAKIYKGMCA-----QGI-TPD-GNTYNIL 647 (751)
Q Consensus 582 ~~~g~~~~A~~l~~~~~~~---g~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~m~~-----~g~-~p~-~~~~~~l 647 (751)
...|++++|+.++++.++. -+.|+ ..+++.|...|...|++++|..++++.++ .|. .|+ ..+++.|
T Consensus 320 ~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nL 399 (490)
T 3n71_A 320 RSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMRA 399 (490)
T ss_dssp HTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHH
T ss_pred HhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 3456666666666655532 11111 24566666667777777777766666554 221 122 4557888
Q ss_pred HHHHHhcCCHHHHHHHHHHHHH-----CCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004470 648 LQGHCKARNMKEAWFLHKEMVQ-----KGFNL--TTSSYNALIKGFLKRKKYLEARELFEEMRR 704 (751)
Q Consensus 648 i~~~~~~g~~~~A~~~~~~~~~-----~~~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 704 (751)
...|...|++++|..+++++++ .|... ...+...+..++...|++++|..+|.++.+
T Consensus 400 a~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~ 463 (490)
T 3n71_A 400 GLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMRE 463 (490)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888888888888888765 34331 123455677777788888888888888876
No 202
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.64 E-value=8.5e-05 Score=64.94 Aligned_cols=87 Identities=7% Similarity=-0.056 Sum_probs=59.0
Q ss_pred HHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH----------HHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 004470 617 CLRNDMRTTAKIYKGMCAQGITPDGNTYNILLQGHCKARNM----------KEAWFLHKEMVQKGFNLTTSSYNALIKGF 686 (751)
Q Consensus 617 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~----------~~A~~~~~~~~~~~~~p~~~~~~~l~~~~ 686 (751)
.+.+.+++|.+.++..++.. +.+...|..+..++...+++ ++|+..|+++++.++. +..+|..++.+|
T Consensus 13 ~r~~~feeA~~~~~~Ai~l~-P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~-~~~A~~~LG~ay 90 (158)
T 1zu2_A 13 DRILLFEQIRQDAENTYKSN-PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPK-KDEAVWCIGNAY 90 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcC-cHHHHHHHHHHH
Confidence 34556777777777777743 23566777777777776654 4777777777776555 666777777777
Q ss_pred HhcC-----------CHHHHHHHHHHHHHC
Q 004470 687 LKRK-----------KYLEARELFEEMRRG 705 (751)
Q Consensus 687 ~~~g-----------~~~~A~~~~~~~~~~ 705 (751)
...| ++++|++.|+++++.
T Consensus 91 ~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l 120 (158)
T 1zu2_A 91 TSFAFLTPDETEAKHNFDLATQFFQQAVDE 120 (158)
T ss_dssp HHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhcccCcchhhhhccHHHHHHHHHHHHHh
Confidence 7653 677777777777764
No 203
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.57 E-value=0.00015 Score=63.33 Aligned_cols=96 Identities=4% Similarity=-0.110 Sum_probs=79.3
Q ss_pred ChHHHHHHHHhhhhCCCCChhHHHHHHHHHHhcCCh----------HHHHHHHHHHHcCCCCCchhhhHHHHHHHHHhhh
Q 004470 110 DYRLVLDFFDWACLRREPILEARCIVVQISVAAKDL----------KTAHGLIHDFWAKPNLDASIAFTHFVERLIYTYK 179 (751)
Q Consensus 110 ~~~~al~~f~~~~~~~~~~~~~~~~~~~~l~~~~~~----------~~a~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~ 179 (751)
.++.|+..|+.+....|.+.++++.++.++...+++ ++|+..++++++.+
T Consensus 17 ~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ld-------------------- 76 (158)
T 1zu2_A 17 LFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLID-------------------- 76 (158)
T ss_dssp HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC--------------------
T ss_pred HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhC--------------------
Confidence 457889999999989999999999999999988765 48888888888766
Q ss_pred cCCCChhhHHHHHHHHHhcC-----------ChhHHHHHHHHHHhCCCccCHHhHHHHHHH
Q 004470 180 DWGSDPHVFDIFFQVLVEAR-----------KLNEARKLFEKLLNYGLVISVDSCNLFLSR 229 (751)
Q Consensus 180 ~~~~~~~~~~~l~~~~~~~g-----------~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~ 229 (751)
|..+.+|..|+.+|...| ++++|++.|+++++. .|+...|...+..
T Consensus 77 --P~~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l--~P~~~~y~~al~~ 133 (158)
T 1zu2_A 77 --PKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDE--QPDNTHYLKSLEM 133 (158)
T ss_dssp --TTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHH
T ss_pred --cCcHHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHh--CCCCHHHHHHHHH
Confidence 778889999999999875 899999999999887 6776655544443
No 204
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.57 E-value=0.00039 Score=57.95 Aligned_cols=80 Identities=9% Similarity=-0.009 Sum_probs=71.1
Q ss_pred HHHHHHHhhhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHcCCCCCchhhhHHHHHHHHHhhhcCCCChhhHHHHH
Q 004470 113 LVLDFFDWACLRREPILEARCIVVQISVAAKDLKTAHGLIHDFWAKPNLDASIAFTHFVERLIYTYKDWGSDPHVFDIFF 192 (751)
Q Consensus 113 ~al~~f~~~~~~~~~~~~~~~~~~~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~ 192 (751)
.|+..|+.+....|.+..++..++.++...|++++|...+++++... |.++.++..++
T Consensus 3 ~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~----------------------p~~~~~~~~la 60 (115)
T 2kat_A 3 AITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFD----------------------PTYSVAWKWLG 60 (115)
T ss_dssp CHHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----------------------TTCHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC----------------------CCcHHHHHHHH
Confidence 46778888888888889999999999999999999999999988765 66677899999
Q ss_pred HHHHhcCChhHHHHHHHHHHhC
Q 004470 193 QVLVEARKLNEARKLFEKLLNY 214 (751)
Q Consensus 193 ~~~~~~g~~~~A~~~~~~~~~~ 214 (751)
.+|...|++++|...|+++++.
T Consensus 61 ~~~~~~g~~~~A~~~~~~al~~ 82 (115)
T 2kat_A 61 KTLQGQGDRAGARQAWESGLAA 82 (115)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHh
Confidence 9999999999999999999875
No 205
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.55 E-value=5.4e-05 Score=62.62 Aligned_cols=64 Identities=11% Similarity=0.064 Sum_probs=42.7
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHHHHcCCCCCchhhhHHHHHHHHHhhhcCCCChhhHHHHHHHHHhcCChhHHHHHH
Q 004470 129 LEARCIVVQISVAAKDLKTAHGLIHDFWAKPNLDASIAFTHFVERLIYTYKDWGSDPHVFDIFFQVLVEARKLNEARKLF 208 (751)
Q Consensus 129 ~~~~~~~~~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 208 (751)
..++..++..+...|++++|...++++++.. |.++.++..++.+|.+.|++++|++.|
T Consensus 4 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~----------------------p~~~~~~~~lg~~~~~~g~~~~A~~~~ 61 (111)
T 2l6j_A 4 FEKQKEQGNSLFKQGLYREAVHCYDQLITAQ----------------------PQNPVGYSNKAMALIKLGEYTQAIQMC 61 (111)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC----------------------TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC----------------------CCCHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 3455666666667777777777777666543 455666667777777777777777777
Q ss_pred HHHHhC
Q 004470 209 EKLLNY 214 (751)
Q Consensus 209 ~~~~~~ 214 (751)
+++++.
T Consensus 62 ~~al~~ 67 (111)
T 2l6j_A 62 QQGLRY 67 (111)
T ss_dssp HHHHTS
T ss_pred HHHHHh
Confidence 777665
No 206
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.49 E-value=0.00047 Score=55.83 Aligned_cols=66 Identities=23% Similarity=0.172 Sum_probs=55.3
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 004470 639 PDGNTYNILLQGHCKARNMKEAWFLHKEMVQKGFNLTTSSYNALIKGFLKRKKYLEARELFEEMRRG 705 (751)
Q Consensus 639 p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 705 (751)
.+...+..+...|...|++++|+..|+++++.++. +...|..++.+|...|++++|++.++++++.
T Consensus 5 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l 70 (100)
T 3ma5_A 5 EDPFTRYALAQEHLKHDNASRALALFEELVETDPD-YVGTYYHLGKLYERLDRTDDAIDTYAQGIEV 70 (100)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 35777888888888999999999999998887655 6778888899999999999999999888763
No 207
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.44 E-value=0.00059 Score=53.71 Aligned_cols=82 Identities=10% Similarity=0.030 Sum_probs=51.1
Q ss_pred ChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCccCHHhHHHHHHHHHhCCCCHHHHHHHHHhchhcCCCcCHHHHHHHH
Q 004470 184 DPHVFDIFFQVLVEARKLNEARKLFEKLLNYGLVISVDSCNLFLSRLSNTCDGLRMVVKSFTEFPELGICWNTASYNIMI 263 (751)
Q Consensus 184 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li 263 (751)
++.++..++..+...|++++|+..|+++++. .|+.......++.++...|++++|...|+++.+..+. +..++..+.
T Consensus 8 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~-~~~~~~~l~ 84 (91)
T 1na3_A 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALEL--DPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN-NAEAKQNLG 84 (91)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHH
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CHHHHHHHH
Confidence 3456778888888888888888888888775 3444333334444444556666666666666665433 445555555
Q ss_pred HHHHh
Q 004470 264 HCLCR 268 (751)
Q Consensus 264 ~~~~~ 268 (751)
..+.+
T Consensus 85 ~~~~~ 89 (91)
T 1na3_A 85 NAKQK 89 (91)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 44443
No 208
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.38 E-value=0.00072 Score=54.71 Aligned_cols=64 Identities=11% Similarity=0.075 Sum_probs=37.0
Q ss_pred CHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004470 605 NAATYNPLIKQHCLRNDMRTTAKIYKGMCAQGITPDGNTYNILLQGHCKARNMKEAWFLHKEMVQ 669 (751)
Q Consensus 605 ~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 669 (751)
+...+..+...|...|++++|++.|+++++.+ +.+...|..+..+|...|++++|++.+++.++
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETD-PDYVGTYYHLGKLYERLDRTDDAIDTYAQGIE 69 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 34455555666666666666666666666542 12344555666666666666666666666554
No 209
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=97.22 E-value=0.00057 Score=55.00 Aligned_cols=84 Identities=8% Similarity=0.026 Sum_probs=52.3
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 004470 647 LLQGHCKARNMKEAWFLHKEMVQKGFNLTTS-SYNALIKGFLKRKKYLEARELFEEMRRGGLVADREIYYFFVDINFEEG 725 (751)
Q Consensus 647 li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 725 (751)
....+.+.|++++|+..++++++..+. +.. .+..++.+|...|++++|++.|+++++.. +.+...+.. +
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~--------~ 75 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTEPV-GKDEAYYLMGNAYRKLGDWQKALNNYQSAIELN-PDSPALQAR--------K 75 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCSS-THHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHH--------H
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHH--------H
Confidence 345566777777777777777776443 556 77777777777777777777777777653 223333311 4
Q ss_pred ChhHHHHHHHHHHHc
Q 004470 726 NTEITLELCDAAIEC 740 (751)
Q Consensus 726 ~~~~A~~~~~~~~~~ 740 (751)
.+.+|...++++...
T Consensus 76 ~~~~a~~~~~~~~~~ 90 (99)
T 2kc7_A 76 MVMDILNFYNKDMYN 90 (99)
T ss_dssp HHHHHHHHHCCTTHH
T ss_pred HHHHHHHHHHHHhcc
Confidence 455555555554443
No 210
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=97.16 E-value=0.00099 Score=69.87 Aligned_cols=87 Identities=6% Similarity=-0.052 Sum_probs=59.5
Q ss_pred HcCCHHHHHHHHHHHHH---CCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----CCCC-C-CHHHHHHHH
Q 004470 618 LRNDMRTTAKIYKGMCA---QGITPD----GNTYNILLQGHCKARNMKEAWFLHKEMVQ-----KGFN-L-TTSSYNALI 683 (751)
Q Consensus 618 ~~g~~~~A~~~~~~m~~---~g~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~~~~-----~~~~-p-~~~~~~~l~ 683 (751)
..|++++|..++++.++ .-+.|+ ..+++.|...|...|++++|+.+++++++ .|.. | ...+++.|+
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 56778888888877765 112222 45577777888888888888888877765 2322 1 134677777
Q ss_pred HHHHhcCCHHHHHHHHHHHHH
Q 004470 684 KGFLKRKKYLEARELFEEMRR 704 (751)
Q Consensus 684 ~~~~~~g~~~~A~~~~~~~~~ 704 (751)
..|...|++++|+.+++++++
T Consensus 390 ~~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 390 RLYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhccCHHHHHHHHHHHHH
Confidence 778888888888888887777
No 211
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=97.00 E-value=0.0049 Score=48.80 Aligned_cols=67 Identities=7% Similarity=-0.039 Sum_probs=40.4
Q ss_pred CCChhHHHHHHHHHHhcCC---hHHHHHHHHHHHcCCCCCchhhhHHHHHHHHHhhhcCCCChhhHHHHHHHHHhcCChh
Q 004470 126 EPILEARCIVVQISVAAKD---LKTAHGLIHDFWAKPNLDASIAFTHFVERLIYTYKDWGSDPHVFDIFFQVLVEARKLN 202 (751)
Q Consensus 126 ~~~~~~~~~~~~~l~~~~~---~~~a~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 202 (751)
|.+...+...+..+...++ .++|..+++++++.+ |.++.+...|+..+.+.|+++
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~d----------------------p~~~rA~~~lg~~~~~~g~y~ 60 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLE----------------------PYNEAALSLIANDHFISFRFQ 60 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHC----------------------TTCHHHHHHHHHHHHHTTCHH
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHC----------------------cCCHHHHHHHHHHHHHcCCHH
Confidence 3445555555555544333 466666666666554 556666666666666666666
Q ss_pred HHHHHHHHHHhC
Q 004470 203 EARKLFEKLLNY 214 (751)
Q Consensus 203 ~A~~~~~~~~~~ 214 (751)
+|+..++++++.
T Consensus 61 ~Ai~~w~~~l~~ 72 (93)
T 3bee_A 61 EAIDTWVLLLDS 72 (93)
T ss_dssp HHHHHHHHHHTC
T ss_pred HHHHHHHHHHhh
Confidence 666666666655
No 212
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=96.95 E-value=0.0032 Score=66.10 Aligned_cols=94 Identities=7% Similarity=-0.035 Sum_probs=66.0
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHCC---CCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----CCCC-C-CH
Q 004470 611 PLIKQHCLRNDMRTTAKIYKGMCAQG---ITPD----GNTYNILLQGHCKARNMKEAWFLHKEMVQ-----KGFN-L-TT 676 (751)
Q Consensus 611 ~l~~~~~~~g~~~~A~~~~~~m~~~g---~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~~~~-----~~~~-p-~~ 676 (751)
..+..+..+|++++|.+++++.++.. +.|+ ..+++.|+..|...|++++|+.+++++++ .|.. | ..
T Consensus 292 ~~ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a 371 (429)
T 3qwp_A 292 KKIEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRG 371 (429)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHH
T ss_pred HHHHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHH
Confidence 34455667788888888888877521 2222 45677788888888888888888887765 2322 1 23
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004470 677 SSYNALIKGFLKRKKYLEARELFEEMRR 704 (751)
Q Consensus 677 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 704 (751)
.+++.|+..|...|++++|+.+++++++
T Consensus 372 ~~l~nLa~~~~~~g~~~eA~~~~~~Al~ 399 (429)
T 3qwp_A 372 VQVMKVGKLQLHQGMFPQAMKNLRLAFD 399 (429)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 4677888888888888888888888887
No 213
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=96.90 E-value=0.002 Score=51.72 Aligned_cols=85 Identities=5% Similarity=0.027 Sum_probs=60.0
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHcCCCCCchhhhHHHHHHHHHhhhcCCCChh-hHHHHHHHHHhcCChhHHHHHHHHHH
Q 004470 134 IVVQISVAAKDLKTAHGLIHDFWAKPNLDASIAFTHFVERLIYTYKDWGSDPH-VFDIFFQVLVEARKLNEARKLFEKLL 212 (751)
Q Consensus 134 ~~~~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~ 212 (751)
..+..+...|++++|...++++++.. |.++. ++..++.+|...|++++|++.|++++
T Consensus 5 ~~a~~~~~~~~~~~A~~~~~~al~~~----------------------p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al 62 (99)
T 2kc7_A 5 KTIKELINQGDIENALQALEEFLQTE----------------------PVGKDEAYYLMGNAYRKLGDWQKALNNYQSAI 62 (99)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHC----------------------SSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHC----------------------CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 45667777888888888888887654 56677 88888888999999999999999888
Q ss_pred hCCCccCHHhHHHHHHHHHhCCCCHHHHHHHHHhchhc
Q 004470 213 NYGLVISVDSCNLFLSRLSNTCDGLRMVVKSFTEFPEL 250 (751)
Q Consensus 213 ~~g~~p~~~~~~~ll~~l~~~~~~~~~a~~~~~~~~~~ 250 (751)
+. .|+...... .+.+.++...|++....
T Consensus 63 ~~--~p~~~~~~~--------~~~~~~a~~~~~~~~~~ 90 (99)
T 2kc7_A 63 EL--NPDSPALQA--------RKMVMDILNFYNKDMYN 90 (99)
T ss_dssp HH--CTTSTHHHH--------HHHHHHHHHHHCCTTHH
T ss_pred hc--CCCcHHHHH--------HHHHHHHHHHHHHHhcc
Confidence 77 344332110 03455666666666544
No 214
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=96.88 E-value=0.0052 Score=52.98 Aligned_cols=83 Identities=16% Similarity=0.141 Sum_probs=52.2
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHhcCCHHHHHH
Q 004470 622 MRTTAKIYKGMCAQGITPDGNTYNILLQGHCKAR---NMKEAWFLHKEMVQKG-FNLTTSSYNALIKGFLKRKKYLEARE 697 (751)
Q Consensus 622 ~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g---~~~~A~~~~~~~~~~~-~~p~~~~~~~l~~~~~~~g~~~~A~~ 697 (751)
...+.+.|.+..+.|. ++..+...+..++++.+ +.++++.++++..+.+ +.-+...+-.+.-++.+.|++++|++
T Consensus 14 l~~~~~~y~~e~~~~~-~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~ 92 (152)
T 1pc2_A 14 LLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALK 92 (152)
T ss_dssp HHHHHHHHHHHHHTTC-CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHH
T ss_pred HHHHHHHHHHHHccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHH
Confidence 4555666666655553 56666666677777766 5557777777777654 11134455566666777777777777
Q ss_pred HHHHHHHC
Q 004470 698 LFEEMRRG 705 (751)
Q Consensus 698 ~~~~~~~~ 705 (751)
+++.+++.
T Consensus 93 y~~~lL~i 100 (152)
T 1pc2_A 93 YVRGLLQT 100 (152)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHhc
Confidence 77777764
No 215
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=96.86 E-value=0.0026 Score=66.65 Aligned_cols=87 Identities=8% Similarity=-0.081 Sum_probs=65.5
Q ss_pred hcCChhHHHHHHHHHHHc---CCCCC----HhhHHHHHHHHHHcCCHHHHHHHHHHHHH-----CCC-CCC-HHHHHHHH
Q 004470 583 MSGMIEDGEKLLKWMLEK---GLKPN----AATYNPLIKQHCLRNDMRTTAKIYKGMCA-----QGI-TPD-GNTYNILL 648 (751)
Q Consensus 583 ~~g~~~~A~~l~~~~~~~---g~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~m~~-----~g~-~p~-~~~~~~li 648 (751)
..|++++|+.++++.++. -+.|+ ..+++.|...|...|++++|..+++++++ .|. .|+ ..+|+.|.
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 567889999988887753 12232 35678888888889999999999888775 231 233 45588888
Q ss_pred HHHHhcCCHHHHHHHHHHHHH
Q 004470 649 QGHCKARNMKEAWFLHKEMVQ 669 (751)
Q Consensus 649 ~~~~~~g~~~~A~~~~~~~~~ 669 (751)
..|...|++++|+.+++++++
T Consensus 390 ~~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 390 RLYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhccCHHHHHHHHHHHHH
Confidence 889999999999998888877
No 216
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=96.78 E-value=0.029 Score=56.35 Aligned_cols=72 Identities=13% Similarity=-0.034 Sum_probs=52.9
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHH
Q 004470 255 NTASYNIMIHCLCRFGKIKEAHLLLLQMELRGCSPDVVSFSTIINGYCYLGELQRVLKLIEEMQIKGLKPNPYTYN 330 (751)
Q Consensus 255 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~ 330 (751)
+..+|..+...+...|++++|...++++...+ |+...|..+...+.-.|++++|.+.+++.... .|...||.
T Consensus 276 ~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL--~P~~~t~~ 347 (372)
T 3ly7_A 276 LSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFNL--RPGANTLY 347 (372)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--SCSHHHHH
T ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCcChHH
Confidence 67777777777777788888888888877765 67777777777777788888888888887776 34544543
No 217
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=96.75 E-value=0.0046 Score=48.96 Aligned_cols=70 Identities=9% Similarity=-0.008 Sum_probs=57.4
Q ss_pred CCChhhHHHHHHHHHhcCC---hhHHHHHHHHHHhCCCccCHHhHHHHHHHHHhCCCCHHHHHHHHHhchhcCCC
Q 004470 182 GSDPHVFDIFFQVLVEARK---LNEARKLFEKLLNYGLVISVDSCNLFLSRLSNTCDGLRMVVKSFTEFPELGIC 253 (751)
Q Consensus 182 ~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~g~~p~~~~~~~ll~~l~~~~~~~~~a~~~~~~~~~~~~~ 253 (751)
|.++.++..++.++...+. .++|..+++++++. .|+......+++......|++++|+..|+++.+..+.
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~--dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~ 75 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQL--EPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDP 75 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCT
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHH--CcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 6778888889999875554 78999999999987 7888888888888877888888888888888877554
No 218
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=96.70 E-value=0.0094 Score=62.51 Aligned_cols=92 Identities=5% Similarity=-0.141 Sum_probs=74.3
Q ss_pred HHHHHhcCChhHHHHHHHHHHHc---CCCCC----HhhHHHHHHHHHHcCCHHHHHHHHHHHHH-----CC-CCCC-HHH
Q 004470 578 MNGFCMSGMIEDGEKLLKWMLEK---GLKPN----AATYNPLIKQHCLRNDMRTTAKIYKGMCA-----QG-ITPD-GNT 643 (751)
Q Consensus 578 i~~~~~~g~~~~A~~l~~~~~~~---g~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~m~~-----~g-~~p~-~~~ 643 (751)
+..+.+.|++++|+.++++.++. -+.|+ ..+++.+...|...|++++|+.+++++++ .| -.|+ ..+
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~ 373 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ 373 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence 56677889999999999999864 12333 35788899999999999999999998876 22 1232 456
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004470 644 YNILLQGHCKARNMKEAWFLHKEMVQ 669 (751)
Q Consensus 644 ~~~li~~~~~~g~~~~A~~~~~~~~~ 669 (751)
++.|...|...|++++|+.+++++++
T Consensus 374 l~nLa~~~~~~g~~~eA~~~~~~Al~ 399 (429)
T 3qwp_A 374 VMKVGKLQLHQGMFPQAMKNLRLAFD 399 (429)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 89999999999999999999999987
No 219
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=96.64 E-value=0.036 Score=55.62 Aligned_cols=142 Identities=11% Similarity=0.074 Sum_probs=78.1
Q ss_pred CCCHHHHHHHHHHHH--hcC---ChhHHHHHHHHHHHcCCCCC-HhhHHHHHHHHHH---cC--CHHHHH---HHHHHHH
Q 004470 568 QPSVVTFNVLMNGFC--MSG---MIEDGEKLLKWMLEKGLKPN-AATYNPLIKQHCL---RN--DMRTTA---KIYKGMC 633 (751)
Q Consensus 568 ~p~~~~~~~li~~~~--~~g---~~~~A~~l~~~~~~~g~~p~-~~~~~~l~~~~~~---~g--~~~~A~---~~~~~m~ 633 (751)
+.+...|...+.+.. ..+ ...+|..+|++.++. .|+ ...|..+..+|.. .+ ...... +.++...
T Consensus 191 p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~l--DP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~ 268 (372)
T 3ly7_A 191 PHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQS--SPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIV 268 (372)
T ss_dssp CSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHH
Confidence 556666666665543 222 346777788877775 444 3444444444431 11 111111 1122111
Q ss_pred HC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH
Q 004470 634 AQ-GITPDGNTYNILLQGHCKARNMKEAWFLHKEMVQKGFNLTTSSYNALIKGFLKRKKYLEARELFEEMRRGGLVADRE 712 (751)
Q Consensus 634 ~~-g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 712 (751)
.. ..+.+..+|..+...+...|++++|+..+++++..+ |+...|..+...+.-.|++++|.+.++++... .|...
T Consensus 269 a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL--~P~~~ 344 (372)
T 3ly7_A 269 TLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFNL--RPGAN 344 (372)
T ss_dssp TCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--SCSHH
T ss_pred hcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCcC
Confidence 11 113356666666666666677777777777777664 46666666677777777777777777777664 45555
Q ss_pred HHH
Q 004470 713 IYY 715 (751)
Q Consensus 713 ~~~ 715 (751)
+|.
T Consensus 345 t~~ 347 (372)
T 3ly7_A 345 TLY 347 (372)
T ss_dssp HHH
T ss_pred hHH
Confidence 554
No 220
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.40 E-value=0.22 Score=57.22 Aligned_cols=103 Identities=15% Similarity=0.098 Sum_probs=54.9
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 004470 505 NSIVNGLCKAGNILQAVKLMEDMEVAGFHPDTFTYTTIMDAYCKSGEMVKAHELLRDMLDKGLQPSVVTFNVLMNGFCMS 584 (751)
Q Consensus 505 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~ 584 (751)
..++..+.+.|..++|.++.++.. .-.......|++++|.++.+.+ .+...|..+...+.+.
T Consensus 633 ~~~~~~l~~~~~~~~a~~~~~~~~------------~~f~~~l~~~~~~~A~~~~~~~------~~~~~W~~la~~al~~ 694 (814)
T 3mkq_A 633 TKIARFLEGQEYYEEALNISPDQD------------QKFELALKVGQLTLARDLLTDE------SAEMKWRALGDASLQR 694 (814)
T ss_dssp HHHHHHHHHTTCHHHHHHHCCCHH------------HHHHHHHHHTCHHHHHHHHTTC------CCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhCCChHHheecCCCcc------------hheehhhhcCCHHHHHHHHHhh------CcHhHHHHHHHHHHHc
Confidence 455555666666666665442110 0122234567777776664322 3556677777777777
Q ss_pred CChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 004470 585 GMIEDGEKLLKWMLEKGLKPNAATYNPLIKQHCLRNDMRTTAKIYKGMCA 634 (751)
Q Consensus 585 g~~~~A~~l~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 634 (751)
|+++.|++.|.++.. |..+...|...|+.+...++-+....
T Consensus 695 ~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~~~a~~ 735 (814)
T 3mkq_A 695 FNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTLAKDAET 735 (814)
T ss_dssp TCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHHHHHHHH
Confidence 777777777765532 23334444445555544444443333
No 221
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=96.21 E-value=0.027 Score=45.57 Aligned_cols=73 Identities=7% Similarity=-0.084 Sum_probs=56.5
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH
Q 004470 640 DGNTYNILLQGHCKARNMKEAWFLHKEMVQKG------FNLTTSSYNALIKGFLKRKKYLEARELFEEMRRGGLVADREI 713 (751)
Q Consensus 640 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~------~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 713 (751)
+..-+..++..+.+.|+++.|...++++++.- -.+...++..++.++.+.|++++|+.+++++++.. |.+...
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~-P~~~~~ 82 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELD-PEHQRA 82 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHH
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC-CCCHHH
Confidence 45556678888999999999999999988741 12356788899999999999999999999998853 334443
No 222
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=96.17 E-value=0.34 Score=46.58 Aligned_cols=92 Identities=13% Similarity=0.156 Sum_probs=61.3
Q ss_pred HHHHHHHHHHHHhcCCCCC---HHHHHHHHHHHHhc-----CCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhc-CCH
Q 004470 272 IKEAHLLLLQMELRGCSPD---VVSFSTIINGYCYL-----GELQRVLKLIEEMQIKGLKPNPYTYNSVVRLLCKT-SKV 342 (751)
Q Consensus 272 ~~~A~~~~~~m~~~g~~p~---~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~-g~~ 342 (751)
..+|..++++..+.. |+ -..|..+...|.+. |+.++|.+.|++..+.+..-+..++......++.. |+.
T Consensus 179 l~~A~a~lerAleLD--P~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~ 256 (301)
T 3u64_A 179 VHAAVMMLERACDLW--PSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNR 256 (301)
T ss_dssp HHHHHHHHHHHHHHC--TTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCH
T ss_pred HHHHHHHHHHHHHhC--CCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCH
Confidence 456666777766543 44 45677777777774 78888888888887764322467777777777774 778
Q ss_pred HHHHHHHHHHHHCCCC--CCHHHHH
Q 004470 343 VEAETILREMMNQGIV--PDNVIYT 365 (751)
Q Consensus 343 ~~A~~~~~~m~~~g~~--p~~~~~~ 365 (751)
+++.+.+++.+..... |+....+
T Consensus 257 ~~a~~~L~kAL~a~p~~~P~~~lan 281 (301)
T 3u64_A 257 AGFDEALDRALAIDPESVPHNKLLV 281 (301)
T ss_dssp HHHHHHHHHHHHCCGGGCSSCHHHH
T ss_pred HHHHHHHHHHHcCCCCCCCChhHHH
Confidence 8888888887776544 4444333
No 223
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=96.15 E-value=0.45 Score=39.37 Aligned_cols=139 Identities=15% Similarity=0.062 Sum_probs=89.8
Q ss_pred hcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 004470 583 MSGMIEDGEKLLKWMLEKGLKPNAATYNPLIKQHCLRNDMRTTAKIYKGMCAQGITPDGNTYNILLQGHCKARNMKEAWF 662 (751)
Q Consensus 583 ~~g~~~~A~~l~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~ 662 (751)
-.|..++..++..+.... .+..-||.++--....-+-+-..++++..=+ --| ...+|++.....
T Consensus 19 ldG~v~qGveii~k~~~s---sni~E~NW~ICNiiD~a~C~y~v~vLd~IGk---iFD----------is~C~NlKrVi~ 82 (172)
T 1wy6_A 19 LDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGS---YFD----------LDKCQNLKSVVE 82 (172)
T ss_dssp HTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGG---GSC----------GGGCSCTHHHHH
T ss_pred HhhhHHHHHHHHHHHcCC---CCccccceeeeecchhhchhHHHHHHHHHhh---hcC----------cHhhhcHHHHHH
Confidence 356667777766666653 2444555555444444444444444444322 111 123455555544
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCC
Q 004470 663 LHKEMVQKGFNLTTSSYNALIKGFLKRKKYLEARELFEEMRRGGLVADREIYYFFVDINFEEGNTEITLELCDAAIECYL 742 (751)
Q Consensus 663 ~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 742 (751)
.+-.+ + .+....+..++.+..+|+-+.-.+++..++.. -+|+++....++.+|.+.|+..+|.+++.++.++|+
T Consensus 83 C~~~~---n--~~se~vd~ALd~lv~~~KkDqLdki~~~~l~n-~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~ 156 (172)
T 1wy6_A 83 CGVIN---N--TLNEHVNKALDILVIQGKRDKLEEIGREILKN-NEVSASILVAIANALRRVGDERDATTLLIEACKKGE 156 (172)
T ss_dssp HHHHT---T--CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHh---c--chHHHHHHHHHHHHHhccHhHHHHHHHHHhcc-CCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhh
Confidence 44333 1 14456667778888899999988888886553 478899999999999999999999999999999986
Q ss_pred C
Q 004470 743 V 743 (751)
Q Consensus 743 ~ 743 (751)
.
T Consensus 157 k 157 (172)
T 1wy6_A 157 K 157 (172)
T ss_dssp H
T ss_pred H
Confidence 3
No 224
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.09 E-value=0.55 Score=53.81 Aligned_cols=46 Identities=20% Similarity=0.217 Sum_probs=25.8
Q ss_pred HHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 004470 512 CKAGNILQAVKLMEDMEVAGFHPDTFTYTTIMDAYCKSGEMVKAHELLRDML 563 (751)
Q Consensus 512 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 563 (751)
...|++++|.++.+. ..+...|..+...+.+.++++.|.+.|..+.
T Consensus 663 l~~~~~~~A~~~~~~------~~~~~~W~~la~~al~~~~~~~A~~~y~~~~ 708 (814)
T 3mkq_A 663 LKVGQLTLARDLLTD------ESAEMKWRALGDASLQRFNFKLAIEAFTNAH 708 (814)
T ss_dssp HHHTCHHHHHHHHTT------CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred hhcCCHHHHHHHHHh------hCcHhHHHHHHHHHHHcCCHHHHHHHHHHcc
Confidence 345566666555432 2345566666666666666666666666543
No 225
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=96.08 E-value=0.036 Score=47.74 Aligned_cols=94 Identities=11% Similarity=-0.012 Sum_probs=70.7
Q ss_pred HHHHHhhhhCCCCChhHHHHHHHHHHhcC---ChHHHHHHHHHHHcCCCCCchhhhHHHHHHHHHhhhcCCCChhhHHHH
Q 004470 115 LDFFDWACLRREPILEARCIVVQISVAAK---DLKTAHGLIHDFWAKPNLDASIAFTHFVERLIYTYKDWGSDPHVFDIF 191 (751)
Q Consensus 115 l~~f~~~~~~~~~~~~~~~~~~~~l~~~~---~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l 191 (751)
.+.|.-.....+.+.++.+..+..|.+++ +.+++..+|+.+++.+. |. .+...+..|
T Consensus 18 ~~~y~~e~~~~~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~-----p~---------------~~rd~lY~L 77 (152)
T 1pc2_A 18 EKKFQSEKAAGSVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGS-----KE---------------EQRDYVFYL 77 (152)
T ss_dssp HHHHHHHHHTTCCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSC-----HH---------------HHHHHHHHH
T ss_pred HHHHHHHHccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCC-----cc---------------chHHHHHHH
Confidence 34455555556788999999999999999 66699999999876430 00 123466789
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCCCccCHHhHHHHHHHH
Q 004470 192 FQVLVEARKLNEARKLFEKLLNYGLVISVDSCNLFLSRL 230 (751)
Q Consensus 192 ~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~l 230 (751)
+-+|.+.|++++|.+.++.+++. .|+..-...+...+
T Consensus 78 Av~~~kl~~Y~~A~~y~~~lL~i--eP~n~QA~~Lk~~i 114 (152)
T 1pc2_A 78 AVGNYRLKEYEKALKYVRGLLQT--EPQNNQAKELERLI 114 (152)
T ss_dssp HHHHHHTSCHHHHHHHHHHHHHH--CTTCHHHHHHHHHH
T ss_pred HHHHHHccCHHHHHHHHHHHHhc--CCCCHHHHHHHHHH
Confidence 99999999999999999999997 78876555554433
No 226
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=96.01 E-value=0.065 Score=51.52 Aligned_cols=106 Identities=9% Similarity=0.037 Sum_probs=72.6
Q ss_pred HHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHhc-----CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc-CCH
Q 004470 622 MRTTAKIYKGMCAQGITPD---GNTYNILLQGHCKA-----RNMKEAWFLHKEMVQKGFNLTTSSYNALIKGFLKR-KKY 692 (751)
Q Consensus 622 ~~~A~~~~~~m~~~g~~p~---~~~~~~li~~~~~~-----g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~-g~~ 692 (751)
...|...+++.++. .|+ ...|..+...|.+. |+.++|.+.|+++++.++.-+..++..+++.++.. |+.
T Consensus 179 l~~A~a~lerAleL--DP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~ 256 (301)
T 3u64_A 179 VHAAVMMLERACDL--WPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNR 256 (301)
T ss_dssp HHHHHHHHHHHHHH--CTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCH
T ss_pred HHHHHHHHHHHHHh--CCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCH
Confidence 45677777777773 455 55677788878774 88888888888888876543467777788888774 888
Q ss_pred HHHHHHHHHHHHCCCC--CCHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 004470 693 LEARELFEEMRRGGLV--ADREIYYFFVDINFEEGNTEITLELCDAA 737 (751)
Q Consensus 693 ~~A~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 737 (751)
++|.+.+++.+..... |+....+ .+..++|..+++++
T Consensus 257 ~~a~~~L~kAL~a~p~~~P~~~lan--------~~~q~eA~~LL~~~ 295 (301)
T 3u64_A 257 AGFDEALDRALAIDPESVPHNKLLV--------ILSQKRARWLKAHV 295 (301)
T ss_dssp HHHHHHHHHHHHCCGGGCSSCHHHH--------HHHHHHHHHHHHTH
T ss_pred HHHHHHHHHHHcCCCCCCCChhHHH--------HHHHHHHHHHHHHh
Confidence 8888888888886544 4433332 23445666666554
No 227
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=95.96 E-value=0.036 Score=45.87 Aligned_cols=83 Identities=12% Similarity=0.093 Sum_probs=43.9
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH---HHHHHHHHHHCCCCC--CHHHHHHHHHHHHhcCChhHHHH
Q 004470 658 KEAWFLHKEMVQKGFNLTTSSYNALIKGFLKRKKYLE---ARELFEEMRRGGLVA--DREIYYFFVDINFEEGNTEITLE 732 (751)
Q Consensus 658 ~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~---A~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~ 732 (751)
..+.+-|.+....|. ++..+-..+++++.++.+..+ ++.+++...+.+ .| .....+.++-++++.|++++|++
T Consensus 18 ~~~~~~y~~e~~~~~-~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~-~p~~~Rd~lY~LAvg~yklg~Y~~A~~ 95 (126)
T 1nzn_A 18 LKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKALK 95 (126)
T ss_dssp HHHHHHHHHHHHHSC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTS-CHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHhccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHHhhhHHHHHH
Confidence 334444444444333 455555566666666555444 555666555543 12 23444455556666666666666
Q ss_pred HHHHHHHcCC
Q 004470 733 LCDAAIECYL 742 (751)
Q Consensus 733 ~~~~~~~~~~ 742 (751)
+++.+++..+
T Consensus 96 ~~~~lL~~eP 105 (126)
T 1nzn_A 96 YVRGLLQTEP 105 (126)
T ss_dssp HHHHHHHHCT
T ss_pred HHHHHHHhCC
Confidence 6666665543
No 228
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=95.95 E-value=3.1 Score=47.20 Aligned_cols=512 Identities=11% Similarity=0.021 Sum_probs=251.0
Q ss_pred hhhHHHHHHHHHhcCChhHHHHHHHHHHh-CCCccCHHhHHHHHHHHHhCCCCHHHHH-HHHHhch----hcCCCcC-HH
Q 004470 185 PHVFDIFFQVLVEARKLNEARKLFEKLLN-YGLVISVDSCNLFLSRLSNTCDGLRMVV-KSFTEFP----ELGICWN-TA 257 (751)
Q Consensus 185 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~g~~p~~~~~~~ll~~l~~~~~~~~~a~-~~~~~~~----~~~~~~~-~~ 257 (751)
..+-.+..++|...|.+++|+.+--.+-. ..+.-+..-...+++.+.. .+-+.. +-++.-. ...+.|. ..
T Consensus 70 ~laalvaSkvyy~Lg~~~~al~yaL~aG~~fd~~~~seYv~tiis~cid---~y~~~~~~~~~~~~~~~~~~~id~rL~~ 146 (963)
T 4ady_A 70 EMAALIASKVYYNLGEYESAVKYALAAKDRFDIDEKSQFVETIVSKSIE---MYVQEASKQYTKDEQFYTKDIIDPKLTS 146 (963)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHGGGSCTTSCSHHHHHHHHHHHH---HHHHHHHHHHHHCTTGGGSSCSCHHHHH
T ss_pred HHHHHHHHHHheeccchHHHHHHHHhCCCcCCCCCcchHHHHHHHHHHH---HHHHHHhhccccccccccccccCHHHHH
Confidence 34556677889999999999987655432 1222232233444444431 110000 0111000 0012222 22
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcC---------CCC-CHHHHHHHH----HHHHhcCCH----HHHHHHHHHHHH
Q 004470 258 SYNIMIHCLCRFGKIKEAHLLLLQMELRG---------CSP-DVVSFSTII----NGYCYLGEL----QRVLKLIEEMQI 319 (751)
Q Consensus 258 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g---------~~p-~~~~~~~li----~~~~~~g~~----~~A~~~~~~m~~ 319 (751)
....++.-+.+.|...+|..+.-+..+.. +.. +...|..++ ...-..-.. .+.+++.-++..
T Consensus 147 Lv~~iv~~cl~hnae~~AvdLalE~erLD~Le~~vd~~~~~~~~~n~~rvclYlls~v~~lv~p~~fr~~vLr~l~~Iy~ 226 (963)
T 4ady_A 147 IFERMIEKCLKASELKLALGIALEGYRLDIIESALKSKLDQDSTSENVKIINYLLTLAITTVTNSKFRSSILRKSFDFLM 226 (963)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHTTCHHHHHHHHHHHCCC-CHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHhhHHHHHHHHHhhccccccccHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHHH
Confidence 34556777788888888887765543211 000 112333332 222222222 233333333322
Q ss_pred CCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH------------
Q 004470 320 KGLKPNPYTYNSVVRLLCKTSKVVEAETILREMMNQGIVPDNVIYTTLIDGFCKMGNVAAAYRLFDEM------------ 387 (751)
Q Consensus 320 ~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m------------ 387 (751)
. . +..-|..++++..+.++.+.+.++|..+.+. .|...--.+.--+.+.++-.--.++.+.+
T Consensus 227 k-~--~~~dy~~a~~~ai~LnD~~li~~if~~l~~~---~d~l~ayQiAFdL~~~~~Q~fL~~v~~~l~~~e~~~kL~~I 300 (963)
T 4ady_A 227 N-M--PNCDYLTLNKVVVNLNDAGLALQLFKKLKEE---NDEGLSAQIAFDLVSSASQQLLEILVTELTAQGYDPALLNI 300 (963)
T ss_dssp H-S--SSCCHHHHHHHHHHHTCHHHHHHHHHHHHTT---CCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred h-C--CchhHHHHHHHHHHcCCHHHHHHHHHHHHhc---ccHHHHHHHHHHHhcccchHHHHHHHHhccccchhHHHHHH
Confidence 2 1 1235788888999999999999999998752 24333222333333333211111111111
Q ss_pred -------------HhCCCCCCHHHHHHHHHHHHh--cCCHHHHHHHHHHHHHCCCCCCHH----------------HHHH
Q 004470 388 -------------RGLNIIPDLLTYTAIICGFCL--TGKMVEAEKLFHEMLGRGLEPDEI----------------VYTA 436 (751)
Q Consensus 388 -------------~~~~~~p~~~~~~~li~~~~~--~g~~~~A~~~~~~m~~~~~~p~~~----------------~~~~ 436 (751)
....-..|..+.+.+ ..... ......|..+..-....|...|.. .-..
T Consensus 301 Lsg~~~~~Lyl~FL~~~n~~d~~~l~~~-K~~ld~r~s~~~~A~~f~Naf~naG~~~D~~l~~~~~Wl~k~~~~~k~sA~ 379 (963)
T 4ady_A 301 LSGLPTCDYYNTFLLNNKNIDIGLLNKS-KSSLDGKFSLFHTAVSVANGFMHAGTTDNSFIKANLPWLGKAQNWAKFTAT 379 (963)
T ss_dssp TTSHHHHHHHHHHHHHHCCCCHHHHHHH-HHHSCTTSHHHHHHHHHHHHHHTTTTCCCHHHHHCHHHHHHCCTHHHHHHH
T ss_pred hCCCChHHHHHHHHHhccccchhhHHHH-HhhhcchhhHHHHHHHHHHHHHhCCCCcchhhhcchhhhhccchHHHHHHH
Confidence 111001121111111 00000 011222333333333344333321 1112
Q ss_pred HHHHHHHcCChhHHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-------CCCHHHHHHH
Q 004470 437 LIDGYCKAGGMKKAFSLHNNMVHMR--LTPNVVTYTALADGLCKSGELETANELLHEMCRKGL-------QLNIYTYNSI 507 (751)
Q Consensus 437 li~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~-------~~~~~~~~~l 507 (751)
..-+....|+.++++.++......+ -.+.+..-..+.-+....|..+++..++.......- .+....-.++
T Consensus 380 aSLGlIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaL 459 (963)
T 4ady_A 380 ASLGVIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASL 459 (963)
T ss_dssp HHHHHHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHH
T ss_pred HHhhhhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHH
Confidence 2234456777788887777665421 112233334445556666766678887777665421 0111222333
Q ss_pred HHHHHHcCC-HHHHHHHHHHHHHCCCCCCHHHHH--HHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH--HH
Q 004470 508 VNGLCKAGN-ILQAVKLMEDMEVAGFHPDTFTYT--TIMDAYCKSGEMVKAHELLRDMLDKGLQPSVVTFNVLMNG--FC 582 (751)
Q Consensus 508 i~~~~~~g~-~~~A~~~~~~~~~~~~~~~~~~~~--~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~--~~ 582 (751)
.-++.-.|. -+++.+.+..+.... .+...... ++...+.-.|+.+....++..+.+.. +......++-+ +.
T Consensus 460 GLGla~~GS~~eev~e~L~~~L~dd-~~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~---~e~vrR~aalgLGll 535 (963)
T 4ady_A 460 GIGLAAMGSANIEVYEALKEVLYND-SATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQ---HGNITRGLAVGLALI 535 (963)
T ss_dssp HHHHHSTTCCCHHHHHHHHHHHHTC-CHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCS---CHHHHHHHHHHHHHH
T ss_pred HHHHHhcCCCCHHHHHHHHHHHhcC-CHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccC---cHHHHHHHHHHHHhh
Confidence 333333342 245666666665532 11111122 23334556788888888888777642 33344444444 44
Q ss_pred hcCChhHHHHHHHHHHHcCCCCCHh-hHH---HHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH
Q 004470 583 MSGMIEDGEKLLKWMLEKGLKPNAA-TYN---PLIKQHCLRNDMRTTAKIYKGMCAQGITPDGNTYNILLQGHCKARNMK 658 (751)
Q Consensus 583 ~~g~~~~A~~l~~~~~~~g~~p~~~-~~~---~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~ 658 (751)
..|+.+.+..+.+.+... .+.. -|. ++.-+|+..|+.....+++..+.... ..+......+.-++...|+.+
T Consensus 536 ~~g~~e~~~~li~~L~~~---~dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d~-~d~VRraAViaLGlI~~g~~e 611 (963)
T 4ady_A 536 NYGRQELADDLITKMLAS---DESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSDS-NDDVRRAAVIALGFVLLRDYT 611 (963)
T ss_dssp TTTCGGGGHHHHHHHHHC---SCHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTSSSCS
T ss_pred hCCChHHHHHHHHHHHhC---CCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccCC-cHHHHHHHHHHHHhhccCCHH
Confidence 678999999888888763 2332 222 34556788999888888999888742 223333334444555567777
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH-HHHHHHHHHHHHCCCCCCHHHHHHHH
Q 004470 659 EAWFLHKEMVQKGFNLTTSSYNALIKGFLKRKKY-LEARELFEEMRRGGLVADREIYYFFV 718 (751)
Q Consensus 659 ~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~-~~A~~~~~~~~~~~~~~~~~~~~~l~ 718 (751)
.+.++++.+.+.+ .|....-..+.-+....|.. .+|+..+..+.. .+|..+....+
T Consensus 612 ~v~rlv~~L~~~~-d~~VR~gAalALGli~aGn~~~~aid~L~~L~~---D~d~~Vrq~Ai 668 (963)
T 4ady_A 612 TVPRIVQLLSKSH-NAHVRCGTAFALGIACAGKGLQSAIDVLDPLTK---DPVDFVRQAAM 668 (963)
T ss_dssp SHHHHTTTGGGCS-CHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHT---CSSHHHHHHHH
T ss_pred HHHHHHHHHHhcC-CHHHHHHHHHHHHHhccCCCcHHHHHHHHHHcc---CCCHHHHHHHH
Confidence 7777776665543 33333333444444445543 678888888875 45655554333
No 229
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=95.80 E-value=0.061 Score=43.43 Aligned_cols=79 Identities=13% Similarity=0.041 Sum_probs=60.9
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHHHHcCCCCCchhhhHHHHHHHHHhhhcCCCChhhHHHHHHHHHhcCChhHHHHH
Q 004470 128 ILEARCIVVQISVAAKDLKTAHGLIHDFWAKPNLDASIAFTHFVERLIYTYKDWGSDPHVFDIFFQVLVEARKLNEARKL 207 (751)
Q Consensus 128 ~~~~~~~~~~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 207 (751)
+...++.++..+...+++..|...++.+++....+.. .-...+.++..|+.+|.+.|++++|+..
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~---------------~~~~~~~i~~~L~~~~~~~g~~~~A~~~ 68 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEI---------------STIDKVSVLDYLSYAVYQQGDLDKALLL 68 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCC---------------CSSCHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCC---------------CcccHHHHHHHHHHHHHHccCHHHHHHH
Confidence 4567889999999999999999999998764200000 0023456889999999999999999999
Q ss_pred HHHHHhCCCccCHHhH
Q 004470 208 FEKLLNYGLVISVDSC 223 (751)
Q Consensus 208 ~~~~~~~g~~p~~~~~ 223 (751)
++++++. .|+....
T Consensus 69 ~~~al~l--~P~~~~~ 82 (104)
T 2v5f_A 69 TKKLLEL--DPEHQRA 82 (104)
T ss_dssp HHHHHHH--CTTCHHH
T ss_pred HHHHHhc--CCCCHHH
Confidence 9999987 6766443
No 230
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=95.05 E-value=6.2 Score=44.83 Aligned_cols=261 Identities=13% Similarity=0.059 Sum_probs=117.6
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHHcCChhHHHHHHHHHHhCCC-------CCCHHHHHHHHH
Q 004470 404 CGFCLTGKMVEAEKLFHEMLGRGLEPDE--IVYTALIDGYCKAGGMKKAFSLHNNMVHMRL-------TPNVVTYTALAD 474 (751)
Q Consensus 404 ~~~~~~g~~~~A~~~~~~m~~~~~~p~~--~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-------~~~~~~~~~li~ 474 (751)
-+....|+.++++.+++..+..+-..+. ..-..+.-+....|..+++..++...+...- .+....-..+.-
T Consensus 382 LGlIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGL 461 (963)
T 4ady_A 382 LGVIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGI 461 (963)
T ss_dssp HHHHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHH
T ss_pred hhhhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHH
Confidence 3455566777776666665542111122 2223333444555555566666655543211 011222223333
Q ss_pred HHHhcCC-HHHHHHHHHHHHHcCCCCCHHHHH--HHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC
Q 004470 475 GLCKSGE-LETANELLHEMCRKGLQLNIYTYN--SIVNGLCKAGNILQAVKLMEDMEVAGFHPDTFTYTTIMDAYCKSGE 551 (751)
Q Consensus 475 ~~~~~g~-~~~A~~l~~~m~~~g~~~~~~~~~--~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 551 (751)
++.-.|. -+++.+.+..+....-. ...... ++...++-.|+.+....++..+.+.. ..+..-...+.-++.-.|+
T Consensus 462 Gla~~GS~~eev~e~L~~~L~dd~~-~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~-~e~vrR~aalgLGll~~g~ 539 (963)
T 4ady_A 462 GLAAMGSANIEVYEALKEVLYNDSA-TSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQ-HGNITRGLAVGLALINYGR 539 (963)
T ss_dssp HHHSTTCCCHHHHHHHHHHHHTCCH-HHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTTTC
T ss_pred HHHhcCCCCHHHHHHHHHHHhcCCH-HHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccC-cHHHHHHHHHHHHhhhCCC
Confidence 3333332 23445555555443211 111112 22233445566666666666655431 1122222223333445667
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHH--HHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHHcCCHHHHHHHH
Q 004470 552 MVKAHELLRDMLDKGLQPSVVTFN--VLMNGFCMSGMIEDGEKLLKWMLEKGLKPNAATYNPLIKQHCLRNDMRTTAKIY 629 (751)
Q Consensus 552 ~~~A~~~~~~~~~~~~~p~~~~~~--~li~~~~~~g~~~~A~~l~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 629 (751)
.+.+..+.+.+.... .|....-. .+.-+|+..|+.....+++..+.+. ...+..-...+.-++...|+.+.+.+++
T Consensus 540 ~e~~~~li~~L~~~~-dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d-~~d~VRraAViaLGlI~~g~~e~v~rlv 617 (963)
T 4ady_A 540 QELADDLITKMLASD-ESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSD-SNDDVRRAAVIALGFVLLRDYTTVPRIV 617 (963)
T ss_dssp GGGGHHHHHHHHHCS-CHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHC-SCHHHHHHHHHHHHHHTSSSCSSHHHHT
T ss_pred hHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccC-CcHHHHHHHHHHHHhhccCCHHHHHHHH
Confidence 777766666666531 22222111 2233455666766555577666653 1222222233333444456655566666
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHhcCCH-HHHHHHHHHHHH
Q 004470 630 KGMCAQGITPDGNTYNILLQGHCKARNM-KEAWFLHKEMVQ 669 (751)
Q Consensus 630 ~~m~~~g~~p~~~~~~~li~~~~~~g~~-~~A~~~~~~~~~ 669 (751)
+.+.+.+ .|....-..+.-+....|+. .+|+.++..+..
T Consensus 618 ~~L~~~~-d~~VR~gAalALGli~aGn~~~~aid~L~~L~~ 657 (963)
T 4ady_A 618 QLLSKSH-NAHVRCGTAFALGIACAGKGLQSAIDVLDPLTK 657 (963)
T ss_dssp TTGGGCS-CHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHT
T ss_pred HHHHhcC-CHHHHHHHHHHHHHhccCCCcHHHHHHHHHHcc
Confidence 5555433 33333333444444444443 566667776653
No 231
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=94.87 E-value=1.4 Score=36.51 Aligned_cols=61 Identities=16% Similarity=0.178 Sum_probs=27.6
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCC
Q 004470 400 TAIICGFCLTGKMVEAEKLFHEMLGRGLEPDEIVYTALIDGYCKAGGMKKAFSLHNNMVHMR 461 (751)
Q Consensus 400 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 461 (751)
+..++.+...|+-++-.+++.+++.. .+|++...-.+..+|.+.|+..+|.+++.++.+.|
T Consensus 95 d~ALd~lv~~~KkDqLdki~~~~l~n-~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG 155 (172)
T 1wy6_A 95 NKALDILVIQGKRDKLEEIGREILKN-NEVSASILVAIANALRRVGDERDATTLLIEACKKG 155 (172)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhccHhHHHHHHHHHhcc-CCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhh
Confidence 33344444444544444444443321 23444444444455555555555555554444444
No 232
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=94.78 E-value=1.5 Score=38.65 Aligned_cols=45 Identities=13% Similarity=0.158 Sum_probs=21.6
Q ss_pred HHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 004470 547 CKSGEMVKAHELLRDMLDKGLQPSVVTFNVLMNGFCMSGMIEDGEKLLKWM 597 (751)
Q Consensus 547 ~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~~ 597 (751)
...|+++.|.++.+.+ .+...|..|.+.....|+++-|++.|.+.
T Consensus 16 L~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~ 60 (177)
T 3mkq_B 16 LEYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQ 60 (177)
T ss_dssp HHTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHT
T ss_pred HhcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHh
Confidence 3445555555544433 24444555555555555555555555443
No 233
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=94.67 E-value=1.1 Score=39.55 Aligned_cols=43 Identities=16% Similarity=0.292 Sum_probs=20.0
Q ss_pred HcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 004470 513 KAGNILQAVKLMEDMEVAGFHPDTFTYTTIMDAYCKSGEMVKAHELLRD 561 (751)
Q Consensus 513 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 561 (751)
..|+++.|.++.+.+ .+...|..|.+.....|+++-|.+.|..
T Consensus 17 ~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~ 59 (177)
T 3mkq_B 17 EYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQT 59 (177)
T ss_dssp HTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred hcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHH
Confidence 344444444444332 2344444454444445555444444444
No 234
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=94.50 E-value=0.4 Score=40.66 Aligned_cols=106 Identities=12% Similarity=0.016 Sum_probs=66.3
Q ss_pred CCChhhHHHHHHHHHhcCCh------hHHHHHHHHHHhCCCccCHH----hHHHHH--HHHHhCCCCHHHHHHHHHhchh
Q 004470 182 GSDPHVFDIFFQVLVEARKL------NEARKLFEKLLNYGLVISVD----SCNLFL--SRLSNTCDGLRMVVKSFTEFPE 249 (751)
Q Consensus 182 ~~~~~~~~~l~~~~~~~g~~------~~A~~~~~~~~~~g~~p~~~----~~~~ll--~~l~~~~~~~~~a~~~~~~~~~ 249 (751)
|.++.+|-..+..+-+.|++ ++-.++|+++... +.|+.. .|-.+. -+.+...++.++|+++|+.+..
T Consensus 10 p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~-~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~ 88 (161)
T 4h7y_A 10 ANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA-LPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARA 88 (161)
T ss_dssp CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH-SCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc-CCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 67888888888888888998 8888999999875 344421 111111 1111233566777777776655
Q ss_pred cCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 004470 250 LGICWNTASYNIMIHCLCRFGKIKEAHLLLLQMELRGCSP 289 (751)
Q Consensus 250 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 289 (751)
..-.. ...|..-...-.++|++.+|.+++......+..|
T Consensus 89 ~hKkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~ 127 (161)
T 4h7y_A 89 NCKKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERGAVP 127 (161)
T ss_dssp HCTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBC
T ss_pred HhHHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCc
Confidence 43222 5556666666666777777777776666655443
No 235
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=94.33 E-value=0.39 Score=39.66 Aligned_cols=94 Identities=9% Similarity=-0.080 Sum_probs=69.2
Q ss_pred HHHHHHhhhhCCCCChhHHHHHHHHHHhcCChHH---HHHHHHHHHcCCCCCchhhhHHHHHHHHHhhhcCCCChhhHHH
Q 004470 114 VLDFFDWACLRREPILEARCIVVQISVAAKDLKT---AHGLIHDFWAKPNLDASIAFTHFVERLIYTYKDWGSDPHVFDI 190 (751)
Q Consensus 114 al~~f~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---a~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 190 (751)
+.+.|.-.....+.+..+.+..+..|.+++...+ +..+|+.+++.+. |. ..-.....
T Consensus 20 ~~~~y~~e~~~~~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~-----p~---------------~~Rd~lY~ 79 (126)
T 1nzn_A 20 FEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGS-----KE---------------EQRDYVFY 79 (126)
T ss_dssp HHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSC-----HH---------------HHHHHHHH
T ss_pred HHHHHHHHhccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCC-----cc---------------hHHHHHHH
Confidence 3444555555566889999999999999998876 8888888776530 10 11134677
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCCCccCHHhHHHHHHH
Q 004470 191 FFQVLVEARKLNEARKLFEKLLNYGLVISVDSCNLFLSR 229 (751)
Q Consensus 191 l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~ 229 (751)
|+-++.+.|++++|...++.+++. .|+..-...+...
T Consensus 80 LAvg~yklg~Y~~A~~~~~~lL~~--eP~n~QA~~Lk~~ 116 (126)
T 1nzn_A 80 LAVGNYRLKEYEKALKYVRGLLQT--EPQNNQAKELERL 116 (126)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHH
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHh--CCCCHHHHHHHHH
Confidence 999999999999999999999987 7877655544433
No 236
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=94.29 E-value=1.8e-05 Score=80.51 Aligned_cols=206 Identities=12% Similarity=0.097 Sum_probs=133.0
Q ss_pred CCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCccCHHhHHHHHHHHHhCCCCHHHHHHHHHhchhcCCCcCHHHHHH
Q 004470 182 GSDPHVFDIFFQVLVEARKLNEARKLFEKLLNYGLVISVDSCNLFLSRLSNTCDGLRMVVKSFTEFPELGICWNTASYNI 261 (751)
Q Consensus 182 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 261 (751)
...|.+|..|+++..+.|++.+|++-|-++. .|+. |.-++.... +.|.+++-.+++..+.+..- ++..=+.
T Consensus 51 ~n~p~VWs~LgkAqL~~~~v~eAIdsyIkA~----Dps~--y~eVi~~A~-~~~~~edLv~yL~MaRk~~k--e~~IDte 121 (624)
T 3lvg_A 51 CNEPAVWSQLAKAQLQKGMVKEAIDSYIKAD----DPSS--YMEVVQAAN-TSGNWEELVKYLQMARKKAR--ESYVETE 121 (624)
T ss_dssp CCCCCCSSSHHHHTTTSSSCTTTTTSSCCCS----CCCS--SSHHHHHTT-TSSCCTTHHHHHHTTSTTCC--STTTTHH
T ss_pred hCCccHHHHHHHHHHccCchHHHHHHHHhCC----ChHH--HHHHHHHHH-hCCCHHHHHHHHHHHHHHhc--ccccHHH
Confidence 4578899999999999999999998776442 3443 344555443 67999999998887766533 4455578
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC--------------------
Q 004470 262 MIHCLCRFGKIKEAHLLLLQMELRGCSPDVVSFSTIINGYCYLGELQRVLKLIEEMQIKG-------------------- 321 (751)
Q Consensus 262 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-------------------- 321 (751)
|+-+|+|.|+..+-.+++ . .||+.-...+.+-|...|.++.|.-+|..+....
T Consensus 122 Li~ayAk~~rL~elEefl----~---~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaAr 194 (624)
T 3lvg_A 122 LIFALAKTNRLAELEEFI----N---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGAR 194 (624)
T ss_dssp HHHHHHTSCSSSTTTSTT----S---CCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTT
T ss_pred HHHHHHhhCcHHHHHHHH----c---CCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999976654443 1 2676667788888999999988887776543211
Q ss_pred CCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHH
Q 004470 322 LKPNPYTYNSVVRLLCKTSKVVEAETILREMMNQGIVPDNVIYTTLIDGFCKMGNVAAAYRLFDEMRGLNIIPDLLTYTA 401 (751)
Q Consensus 322 ~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ 401 (751)
-..++.||..+-.+|...+++.-|...=-.++-. +|. ...++..|-..|.+++-+.+++.-.... ......|+-
T Consensus 195 KAns~ktWKeV~~ACvd~~EfrLAqicGLniIvh---ade--L~elv~~YE~~G~f~ELIsLlEaglglE-rAHmGmFTE 268 (624)
T 3lvg_A 195 KANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVH---ADE--LEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTE 268 (624)
T ss_dssp TCCSSCSHHHHTHHHHHSCTTTTTTHHHHHHHCC---SSC--CSGGGSSSSTTCCCTTSTTTHHHHTTST-TCCHHHHHH
T ss_pred hcCChhHHHHHHHHHhCchHHHHHHHhcchhccc---HHH--HHHHHHHHHhCCCHHHHHHHHHHHhCCC-chhHHHHHH
Confidence 0124556666666666666665554433333321 111 1234555666677777777776655322 235566666
Q ss_pred HHHHHHhc
Q 004470 402 IICGFCLT 409 (751)
Q Consensus 402 li~~~~~~ 409 (751)
|.-.|++-
T Consensus 269 LaILYsKY 276 (624)
T 3lvg_A 269 LAILYSKF 276 (624)
T ss_dssp HHHHHHSS
T ss_pred HHHHHHhc
Confidence 66666654
No 237
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=94.25 E-value=0.28 Score=40.68 Aligned_cols=70 Identities=14% Similarity=0.155 Sum_probs=36.4
Q ss_pred CCCCHHHHHHHHHHHHhcCCH---HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcC
Q 004470 672 FNLTTSSYNALIKGFLKRKKY---LEARELFEEMRRGGLVADREIYYFFVDINFEEGNTEITLELCDAAIECY 741 (751)
Q Consensus 672 ~~p~~~~~~~l~~~~~~~g~~---~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 741 (751)
..|++.+--.+++++.++.+. .+++.+++...+.+..-..+.++.++-++++.|++++|+++++.+++..
T Consensus 36 ~~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~e 108 (134)
T 3o48_A 36 PTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHE 108 (134)
T ss_dssp GGSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTC
T ss_pred CCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhC
Confidence 344555555555666555433 3455555555554311123444555555666666666666666655554
No 238
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=94.10 E-value=0.89 Score=38.26 Aligned_cols=68 Identities=12% Similarity=0.048 Sum_probs=37.8
Q ss_pred CCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 004470 638 TPDGNTYNILLQGHCKARN---MKEAWFLHKEMVQKGFNLTTSSYNALIKGFLKRKKYLEARELFEEMRRG 705 (751)
Q Consensus 638 ~p~~~~~~~li~~~~~~g~---~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 705 (751)
.|+..+--.+..++.+..+ ..+++.++++....++.-.....-.|+-++.+.|++++|+++.+.+++.
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~ 106 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH 106 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHT
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 4555555555566665553 3345666666665433223334445555666666666666666666664
No 239
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=93.39 E-value=0.0004 Score=70.83 Aligned_cols=420 Identities=11% Similarity=0.049 Sum_probs=230.2
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHHHHcCCCCCchhhhHHHHHHHHHhhhcCCCChhhHHHHHHHHHhcCChhHHHHHH
Q 004470 129 LEARCIVVQISVAAKDLKTAHGLIHDFWAKPNLDASIAFTHFVERLIYTYKDWGSDPHVFDIFFQVLVEARKLNEARKLF 208 (751)
Q Consensus 129 ~~~~~~~~~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 208 (751)
...|..++.+..+.|.+++-...|..+.+. ...|.+=+.|+-+|++.+++.+-.+++
T Consensus 83 ps~y~eVi~~A~~~~~~edLv~yL~MaRk~-----------------------~ke~~IDteLi~ayAk~~rL~elEefl 139 (624)
T 3lvg_A 83 PSSYMEVVQAANTSGNWEELVKYLQMARKK-----------------------ARESYVETELIFALAKTNRLAELEEFI 139 (624)
T ss_dssp CCSSSHHHHHTTTSSCCTTHHHHHHTTSTT-----------------------CCSTTTTHHHHHHHHTSCSSSTTTSTT
T ss_pred hHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-----------------------hcccccHHHHHHHHHhhCcHHHHHHHH
Confidence 344556677777788888877777665443 244555578889999999877655443
Q ss_pred HHHHhCCCccCHHhHHHHHHHHHhCCCCHHHHHHHHHhchhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 004470 209 EKLLNYGLVISVDSCNLFLSRLSNTCDGLRMVVKSFTEFPELGICWNTASYNIMIHCLCRFGKIKEAHLLLLQMELRGCS 288 (751)
Q Consensus 209 ~~~~~~g~~p~~~~~~~ll~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 288 (751)
. .|++.-...+...++ ..|.++.|.-+|..+.. |..|...+.+.|++..|.+.-++.
T Consensus 140 ~-------~~N~A~iq~VGDrcf-~e~lYeAAKilys~isN---------~akLAstLV~L~~yq~AVdaArKA------ 196 (624)
T 3lvg_A 140 N-------GPNNAHIQQVGDRCY-DEKMYDAAKLLYNNVSN---------FGRLASTLVHLGEYQAAVDGARKA------ 196 (624)
T ss_dssp S-------CCSSSCTHHHHHHHH-HSCCSTTSSTTGGGSCC---------CTTTSSSSSSCSGGGSSTTTTTTC------
T ss_pred c-------CCCcccHHHHHHHHH-HccCHHHHHHHHHhCcc---------HHHHHHHHHHHHHHHHHHHHHHhc------
Confidence 3 466666667777777 56888877777765543 345566677888888877644322
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 004470 289 PDVVSFSTIINGYCYLGELQRVLKLIEEMQIKGLKPNPYTYNSVVRLLCKTSKVVEAETILREMMNQGIVPDNVIYTTLI 368 (751)
Q Consensus 289 p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li 368 (751)
-++.||..+-.+|...+++.-|.-.--.+.- .+.-...++..|-..|.+++-+.+++.-+... ......|+-|.
T Consensus 197 ns~ktWKeV~~ACvd~~EfrLAqicGLniIv-----hadeL~elv~~YE~~G~f~ELIsLlEaglglE-rAHmGmFTELa 270 (624)
T 3lvg_A 197 NSTRTWKEVCFACVDGKEFRLAQMCGLHIVV-----HADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELA 270 (624)
T ss_dssp CSSCSHHHHTHHHHHSCTTTTTTHHHHHHHC-----CSSCCSGGGSSSSTTCCCTTSTTTHHHHTTST-TCCHHHHHHHH
T ss_pred CChhHHHHHHHHHhCchHHHHHHHhcchhcc-----cHHHHHHHHHHHHhCCCHHHHHHHHHHHhCCC-chhHHHHHHHH
Confidence 3567888888899998888876544444332 22233456677888899998888888876431 34667788888
Q ss_pred HHHHHcCCHHHHHHHHHHHHhC-CCCC------CHHHHHHHHHHHHhcCCHHHHHHHH-------------HHHHHCCCC
Q 004470 369 DGFCKMGNVAAAYRLFDEMRGL-NIIP------DLLTYTAIICGFCLTGKMVEAEKLF-------------HEMLGRGLE 428 (751)
Q Consensus 369 ~~~~~~g~~~~A~~~~~~m~~~-~~~p------~~~~~~~li~~~~~~g~~~~A~~~~-------------~~m~~~~~~ 428 (751)
-.|+|- ++++..+.++..-.+ +++. ....|.-++-.|++-.+++.|.... .+.+.+ .
T Consensus 271 ILYsKY-~PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~ltMi~h~~~Aw~h~~Fkdii~K--V 347 (624)
T 3lvg_A 271 ILYSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIITK--V 347 (624)
T ss_dssp HHHHSS-CTTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHHHTTTSCHHHHCCGGGGTTTGGG--C
T ss_pred HHHHhc-CHHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHHHHHHhCChhhccHHHHHHHHHH--c
Confidence 888776 455555544432221 1111 2234666777777777777654321 111111 2
Q ss_pred CCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 004470 429 PDEIVYTALIDGYCKAGGMKKAFSLHNNMVHMRLTPNVVTYTALADGLCKSGELETANELLHEMCRKGLQLNIYTYNSIV 508 (751)
Q Consensus 429 p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~~~~li 508 (751)
.+...|-..|..|.... ...--+++.-+. ..+.++ ..++.+.+.|++.-+...+......+ +...-.++-
T Consensus 348 aN~EiyYKAi~FYL~e~-P~lL~DLL~vL~-prlDh~-----RvV~~~~k~~~LpLIkpYL~~Vq~~N---~~aVNeAln 417 (624)
T 3lvg_A 348 ANVELYYRAIQFYLEFK-PLLLNDLLMVLS-PRLDHT-----RAVNYFSKVKQLPLVKPYLRSVQNHN---NKSVNESLN 417 (624)
T ss_dssp SCSHHHHHHHHHHTTSC-CTTSHHHHHHHC-TTCCST-----TTHHHHHTTTCGGGGTGGGTSCCCSC---CHHHHHHHH
T ss_pred chHHHHHHHHHHHHHhC-hHHHHHHHHhcc-ccCChH-----HHHHHHHhcCCchhhHHHHHHHHHhh---HHHHHHHHH
Confidence 34555555555554332 111111111111 011111 22333444444444443333332221 223333444
Q ss_pred HHHHHcCCHHHHHH------------HHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHH
Q 004470 509 NGLCKAGNILQAVK------------LMEDMEVAGFHPDTFTYTTIMDAYCKSGEMVKAHELLRDMLDKGLQPSVVTFNV 576 (751)
Q Consensus 509 ~~~~~~g~~~~A~~------------~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ 576 (751)
+.|....+++.-.. +-.++.+ .+-...-..-...|.+.++|+++..+.++ .+ .|.-
T Consensus 418 ~L~IEEEDy~~LR~SId~ydNFD~i~LA~rLEk---HeL~eFRrIAA~LYkkn~rw~qsi~l~Kk---Dk------lykD 485 (624)
T 3lvg_A 418 NLFITEEDYQALRTSIDAYDNFDNISLAQRLEK---HELIEFRRIAAYLFKGNNRWKQSVELCKK---DS------LYKD 485 (624)
T ss_dssp HHHHHTTCCHHHHHTTSSCCCSCTTHHHHHHHT---CSSHHHHHHHHHHHHTTCHHHHHSSCSST---TC------CTTG
T ss_pred HHHhhhhhHHHHHHHHHHhccccHHHHHHHHhh---CchHHHHHHHHHHHHhcccHHHHHHHHHh---cc------cHHH
Confidence 45555555443322 2223332 12233333444556677778777655432 11 1222
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHHcCCHHHHHHH
Q 004470 577 LMNGFCMSGMIEDGEKLLKWMLEKGLKPNAATYNPLIKQHCLRNDMRTTAKI 628 (751)
Q Consensus 577 li~~~~~~g~~~~A~~l~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~ 628 (751)
.|...+..|+.+-|.++++-..+.| +...|...+-.|...=+++-+.++
T Consensus 486 AietAa~S~~~elaeeLL~yFv~~g---~~EcF~a~LytCYdLlrpDvVlEl 534 (624)
T 3lvg_A 486 AMQYASESKDTELAEELLQWFLQEE---KRECFGACLFTCYDLLRPDVVLET 534 (624)
T ss_dssp GGTTTTTCCCTTHHHHHHHHHHHHC---STHHHHHHHHHTSSSSSCHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHcC---chHHHHHHHHHHhhccChHHHHHH
Confidence 3444456777777888887777765 334444444444444445554443
No 240
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=93.16 E-value=0.38 Score=40.80 Aligned_cols=112 Identities=9% Similarity=0.038 Sum_probs=70.3
Q ss_pred CCHhhHHHHHHHHHHcCCH------HHHHHHHHHHHHCCCCCCHH----HHHHHHHH---HHhcCCHHHHHHHHHHHHHC
Q 004470 604 PNAATYNPLIKQHCLRNDM------RTTAKIYKGMCAQGITPDGN----TYNILLQG---HCKARNMKEAWFLHKEMVQK 670 (751)
Q Consensus 604 p~~~~~~~l~~~~~~~g~~------~~A~~~~~~m~~~g~~p~~~----~~~~li~~---~~~~g~~~~A~~~~~~~~~~ 670 (751)
-|..+|-..+...-+.|+. ++..++|++.... ++|+.. .|-.+.-- +...++.++|.++|+.+++.
T Consensus 11 ~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~-~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~~ 89 (161)
T 4h7y_A 11 NNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA-LPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARAN 89 (161)
T ss_dssp CSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH-SCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc-CCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 3666777777777777887 7777888887774 455421 12222111 12446778888888888765
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 004470 671 GFNLTTSSYNALIKGFLKRKKYLEARELFEEMRRGGLVADREIYYFFV 718 (751)
Q Consensus 671 ~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 718 (751)
+-.- ...|...+.--.++|+.+.|.+++.+++..+ +.+.......+
T Consensus 90 hKkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~-~k~~~~le~a~ 135 (161)
T 4h7y_A 90 CKKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERG-AVPLEMLEIAL 135 (161)
T ss_dssp CTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-CBCHHHHHHHH
T ss_pred hHHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccC-CCcHHHHHHHH
Confidence 3332 6666666666677888888888888888765 33344444333
No 241
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=93.09 E-value=0.14 Score=44.42 Aligned_cols=33 Identities=9% Similarity=0.060 Sum_probs=25.7
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcC
Q 004470 709 ADREIYYFFVDINFEEGNTEITLELCDAAIECY 741 (751)
Q Consensus 709 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 741 (751)
.+.+..+.++.+|.+.|++++|+..++.+-.+.
T Consensus 120 ~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip~k~ 152 (167)
T 3ffl_A 120 SEIEVKYKLAECYTVLKQDKDAIAILDGIPSRQ 152 (167)
T ss_dssp CHHHHHHHHHHHHHHTTCHHHHHHHHHTSCGGG
T ss_pred chHHHHHHHHHHHHHHCCHHHHHHHHhcCCchh
Confidence 345677778899999999999999888764443
No 242
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=91.53 E-value=6 Score=47.06 Aligned_cols=148 Identities=14% Similarity=0.100 Sum_probs=88.3
Q ss_pred CCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCccCHHhHHHHHHHHHhCCCCHHHHHHHHHhchhcCCCcCHHHHH
Q 004470 181 WGSDPHVFDIFFQVLVEARKLNEARKLFEKLLNYGLVISVDSCNLFLSRLSNTCDGLRMVVKSFTEFPELGICWNTASYN 260 (751)
Q Consensus 181 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 260 (751)
|+.++..-.+++.+|...|++++|.+.|.++.. |+..+... .........+...... ...-..-|.
T Consensus 838 ~~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~-~~~~~~~l-----------~~~~~~~~~~~~~~~~--~~~l~~YY~ 903 (1139)
T 4fhn_B 838 LNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSL-VLYSHTSQ-----------FAVLREFQEIAEKYHH--QNLLSCYYL 903 (1139)
T ss_dssp SCCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCC-SCTTCCCS-----------CSSHHHHHHHHHTTTS--CCSSHHHHH
T ss_pred ccCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhh-hhcccchh-----------hhhhcccccccccccc--cccHHHHHH
Confidence 466777677888888889999999888887632 22221110 0011110011100000 011234577
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHH
Q 004470 261 IMIHCLCRFGKIKEAHLLLLQMELRGCSPD----VVSFSTIINGYCYLGELQRVLKLIEEMQIKGLKPNPYTYNSVVRLL 336 (751)
Q Consensus 261 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~ 336 (751)
.++..+-+.|.++.+.++-....+....-+ ...|..+...+...|++++|...+-.+.....+ ......|+..+
T Consensus 904 hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~r--~~cLr~LV~~l 981 (1139)
T 4fhn_B 904 HLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPLK--KSCLLDFVNQL 981 (1139)
T ss_dssp HHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSSC--HHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHHH--HHHHHHHHHHH
Confidence 788888888888888887776554322112 125778888888889999888888877655332 34556666667
Q ss_pred HhcCCHHH
Q 004470 337 CKTSKVVE 344 (751)
Q Consensus 337 ~~~g~~~~ 344 (751)
|..|..++
T Consensus 982 ce~~~~~~ 989 (1139)
T 4fhn_B 982 TKQGKINQ 989 (1139)
T ss_dssp HHHCCHHH
T ss_pred HhCCChhh
Confidence 76665443
No 243
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=91.30 E-value=1.1 Score=38.87 Aligned_cols=129 Identities=10% Similarity=-0.018 Sum_probs=73.6
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHcCCCCCchh-hhHHHHHHHHHhhhcCCCChhhHHHHHHHHHhcCChhHHHHHH
Q 004470 130 EARCIVVQISVAAKDLKTAHGLIHDFWAKPNLDASI-AFTHFVERLIYTYKDWGSDPHVFDIFFQVLVEARKLNEARKLF 208 (751)
Q Consensus 130 ~~~~~~~~~l~~~~~~~~a~~~l~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 208 (751)
-++..-+..+...+.|+.|+.+..-++.....+... +.. ....++..++.++...|.+..|...|
T Consensus 21 ~~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~--------------~~~~~l~~ladalf~~~eyrrA~~~y 86 (167)
T 3ffl_A 21 MNVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPP--------------QKYQLLVYHADSLFHDKEYRNAVSKY 86 (167)
T ss_dssp CCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHH--------------HHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHH--------------HHHHHHHHHHHHHHcccHHHHHHHHH
Confidence 345555667778899999988887766542111000 000 01236788999999999999999999
Q ss_pred HHHHhCCC-ccCHHhHHHHHHHHHhCCCCHHHHHHHHHhchhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 004470 209 EKLLNYGL-VISVDSCNLFLSRLSNTCDGLRMVVKSFTEFPELGICWNTASYNIMIHCLCRFGKIKEAHLLLLQMELR 285 (751)
Q Consensus 209 ~~~~~~g~-~p~~~~~~~ll~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 285 (751)
++++...- -+...+....++. ...... ......++...-.+..+|.+.|++++|+.+++.+..+
T Consensus 87 ~qALq~~k~l~k~~s~~~~~~~----~ss~p~---------s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip~k 151 (167)
T 3ffl_A 87 TMALQQKKALSKTSKVRPSTGN----SASTPQ---------SQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGIPSR 151 (167)
T ss_dssp HHHHHHHHCC---------------------------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSCGG
T ss_pred HHHHHHHHHHhcCCCccccccc----cCCCcc---------cccccchHHHHHHHHHHHHHHCCHHHHHHHHhcCCch
Confidence 99864311 1111110000000 000000 0011224555556888999999999999999886543
No 244
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=90.17 E-value=24 Score=38.38 Aligned_cols=48 Identities=21% Similarity=0.264 Sum_probs=36.1
Q ss_pred cCChHHHHHHHHhhhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHcCC
Q 004470 108 RSDYRLVLDFFDWACLRREPILEARCIVVQISVAAKDLKTAHGLIHDFWAKP 159 (751)
Q Consensus 108 ~~~~~~al~~f~~~~~~~~~~~~~~~~~~~~l~~~~~~~~a~~~l~~~~~~~ 159 (751)
+.++...+.||.- .|.+....|..+..+...|+-.+|......+...+
T Consensus 85 ~~~w~~~l~~~~~----~p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~~ 132 (618)
T 1qsa_A 85 REDWRGLLAFSPE----KPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTG 132 (618)
T ss_dssp TTCHHHHHHHCCS----CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCS
T ss_pred CCCHHHHHHhccC----CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCC
Confidence 5667666665442 46678888888888888999888888888877665
No 245
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=90.11 E-value=2.7 Score=46.76 Aligned_cols=50 Identities=16% Similarity=0.139 Sum_probs=23.3
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 004470 687 LKRKKYLEARELFEEMRRGGLVADREIYYFFVDINFEEGNTEITLELCDAA 737 (751)
Q Consensus 687 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 737 (751)
...|+++-|+++.+++.... |.+..+|..|+.+|...|+++.|+=.++.+
T Consensus 348 l~K~~~elAL~~Ak~AV~~a-PseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 348 LNRGDYELALGVSNTSTELA-LDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred hccCcHHHHHHHHHHHHhcC-chhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 34445555555555544431 334444555555555555555554444433
No 246
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=90.10 E-value=4.6 Score=44.88 Aligned_cols=126 Identities=10% Similarity=0.011 Sum_probs=72.4
Q ss_pred HHHHHHhcCC-HHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCC-HHHHHHHHHHHHHC------CCCCCcc------
Q 004470 262 MIHCLCRFGK-IKEAHLLLLQMELRGCSPDVVSFSTIINGYCYLGE-LQRVLKLIEEMQIK------GLKPNPY------ 327 (751)
Q Consensus 262 li~~~~~~g~-~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~-~~~A~~~~~~m~~~------g~~p~~~------ 327 (751)
|+..+...|+ ++.|..+|+++......-+......+|..+.+.++ --+|.+++.+..+. ..++...
T Consensus 254 Ll~~~~~t~~~~~~a~~~le~L~~~~p~~~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~~~~~ 333 (754)
T 4gns_B 254 LKSFIAITPSLVDFTIDYLKGLTKKDPIHDIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADSARLM 333 (754)
T ss_dssp HHHHHHTCGGGHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHHHH
T ss_pred HHHHHcccccHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhccccccccccc
Confidence 3443344555 57788888888775422122222233333333332 22455555444321 1121111
Q ss_pred -----cHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 004470 328 -----TYNSVVRLLCKTSKVVEAETILREMMNQGIVPDNVIYTTLIDGFCKMGNVAAAYRLFDEMR 388 (751)
Q Consensus 328 -----~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 388 (751)
....-.+.+...|+++-|+++-++..... +-+-.+|..|..+|.+.|+++.|+-.++.+.
T Consensus 334 ~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~a-PseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 334 NCMSDLLNIQTNFLLNRGDYELALGVSNTSTELA-LDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred CcchHHHHHHHHHHhccCcHHHHHHHHHHHHhcC-chhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 12222455667888888888888877762 4456788888888888888888888877764
No 247
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=89.55 E-value=16 Score=35.59 Aligned_cols=21 Identities=19% Similarity=-0.010 Sum_probs=16.9
Q ss_pred HHHhcCChhHHHHHHHHHHHc
Q 004470 720 INFEEGNTEITLELCDAAIEC 740 (751)
Q Consensus 720 ~~~~~g~~~~A~~~~~~~~~~ 740 (751)
.|.-.|+...|..+++...++
T Consensus 197 ~yL~l~n~~~A~~~~~~f~~~ 217 (312)
T 2wpv_A 197 NYLFISNISFAHESKDIFLER 217 (312)
T ss_dssp HHHHTTBHHHHHHHHHHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHHH
Confidence 566789999999999887654
No 248
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=89.47 E-value=6 Score=33.26 Aligned_cols=70 Identities=14% Similarity=0.162 Sum_probs=38.3
Q ss_pred CCCHHHHHHHHHHHHhcCCH---HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCC
Q 004470 673 NLTTSSYNALIKGFLKRKKY---LEARELFEEMRRGGLVADREIYYFFVDINFEEGNTEITLELCDAAIECYL 742 (751)
Q Consensus 673 ~p~~~~~~~l~~~~~~~g~~---~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 742 (751)
.|+..+--.+++++.++.+. .+++.+++...+.+..-..+..+.++-++++.|++++|+++++.+++..+
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP 108 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHER 108 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCC
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCC
Confidence 45555555666666655533 34555666655533112334444555566666666666666666665543
No 249
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=89.21 E-value=2.4 Score=43.43 Aligned_cols=78 Identities=6% Similarity=0.006 Sum_probs=60.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----CCCCCCHHHHHHHH
Q 004470 644 YNILLQGHCKARNMKEAWFLHKEMVQKGFNLTTSSYNALIKGFLKRKKYLEARELFEEMRR-----GGLVADREIYYFFV 718 (751)
Q Consensus 644 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~~~~~l~ 718 (751)
...++..+...|+.++|+..+..+....+- +...|..++.+|.+.|+..+|++.|+++.+ .|+.|.+.+-...-
T Consensus 174 ~~~~~~~~l~~g~~~~a~~~l~~~~~~~P~-~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~~l~~ 252 (388)
T 2ff4_A 174 HTAKAEAEIACGRASAVIAELEALTFEHPY-REPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRALNE 252 (388)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHH
Confidence 345667778889999999888888877544 788888999999999999999998888754 58888887765544
Q ss_pred HHHH
Q 004470 719 DINF 722 (751)
Q Consensus 719 ~~~~ 722 (751)
..+.
T Consensus 253 ~il~ 256 (388)
T 2ff4_A 253 RILR 256 (388)
T ss_dssp HHHT
T ss_pred HHHc
Confidence 4443
No 250
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=88.89 E-value=24 Score=36.65 Aligned_cols=50 Identities=14% Similarity=0.068 Sum_probs=31.8
Q ss_pred CCHHHHHHHHHHHHHc-----CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 004470 480 GELETANELLHEMCRK-----GLQLNIYTYNSIVNGLCKAGNILQAVKLMEDMEV 529 (751)
Q Consensus 480 g~~~~A~~l~~~m~~~-----g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 529 (751)
|++++|++.+..+.+. +..........++..|...|+++...+.+.-+.+
T Consensus 30 ~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lsk 84 (445)
T 4b4t_P 30 NDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSK 84 (445)
T ss_dssp HHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 5677777766655542 2333455666777777777777777666665544
No 251
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=88.73 E-value=19 Score=35.36 Aligned_cols=191 Identities=13% Similarity=0.071 Sum_probs=105.6
Q ss_pred cCCHHHHHHHHHHHHHCCCC----CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhH
Q 004470 514 AGNILQAVKLMEDMEVAGFH----PDTFTYTTIMDAYCKSGEMVKAHELLRDMLDKGLQPSVVTFNVLMNGFCMSGMIED 589 (751)
Q Consensus 514 ~g~~~~A~~~~~~~~~~~~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~ 589 (751)
.+++++.+.-++.-.+.|-. --...|.++..-|.+.+++++|.+++..-. ..+.+.|+...
T Consensus 9 ~~~~~~~i~rl~~~I~~G~y~~~YEAHQ~~RTi~~Ry~~~k~y~eAidLL~~GA---------------~~ll~~~Q~~s 73 (336)
T 3lpz_A 9 SNKIERIIARLQRRIAEGQPEEQYEAAQETRLVAARYSKQGNWAAAVDILASVS---------------QTLLRSGQGGS 73 (336)
T ss_dssp -CHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH---------------HHHHHTTCHHH
T ss_pred hhHHHHHHHHHHHHHhCCCCccccHHHHHHHHHHHHHHhhcCHHHHHHHHHHHH---------------HHHHHCCCcch
Confidence 34556666666666665511 112456666677777777777777654432 23556677777
Q ss_pred HHHHH----HHHHHcCCCCCHhhHHHHHHHHHHcCCHH-HHHHHHHHHHH----CC--CCCCHHHHHHHHHHHHhcCCHH
Q 004470 590 GEKLL----KWMLEKGLKPNAATYNPLIKQHCLRNDMR-TTAKIYKGMCA----QG--ITPDGNTYNILLQGHCKARNMK 658 (751)
Q Consensus 590 A~~l~----~~~~~~g~~p~~~~~~~l~~~~~~~g~~~-~A~~~~~~m~~----~g--~~p~~~~~~~li~~~~~~g~~~ 658 (751)
|.++. +-..+.++++|......++..+.....-+ .=..+.+++++ .| ..-|+.....+...|.+.+++.
T Consensus 74 g~DL~~llvevy~~~~~~~~~~~~~rL~~L~~~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~ 153 (336)
T 3lpz_A 74 GGDLAVLLVDTFRQAGQRVDGASRGKLLGCLRLFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFE 153 (336)
T ss_dssp HHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHH
Confidence 66655 34445577777777777777665444311 11223333332 12 2235666667777777777777
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH-HHHHHHHhcCChhHHHHHHHHH
Q 004470 659 EAWFLHKEMVQKGFNLTTSSYNALIKGFLKRKKYLEARELFEEMRRGGLVADREIYY-FFVDINFEEGNTEITLELCDAA 737 (751)
Q Consensus 659 ~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~g~~~~A~~~~~~~ 737 (751)
+|...|= .|-.+++..+..++.-+...+. +.+...|. ..+-.|.-.|+...|..+++..
T Consensus 154 ~Ae~H~i----lg~~~s~~~~a~mL~ew~~~~~----------------~~e~dlfiaRaVL~yL~l~n~~~A~~~~~~f 213 (336)
T 3lpz_A 154 AAEKHLV----LGTKESPEVLARMEYEWYKQDE----------------SHTAPLYCARAVLPYLLVANVRAANTAYRIF 213 (336)
T ss_dssp HHHHHHT----TSCTTHHHHHHHHHHHHHHTSC----------------GGGHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHH----hcCCchHHHHHHHHHHHHHhcC----------------CccHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 7766552 2333233455444443333322 12222222 2334577788999999988777
Q ss_pred HH
Q 004470 738 IE 739 (751)
Q Consensus 738 ~~ 739 (751)
.+
T Consensus 214 ~~ 215 (336)
T 3lpz_A 214 TS 215 (336)
T ss_dssp HH
T ss_pred HH
Confidence 65
No 252
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=88.59 E-value=19 Score=35.11 Aligned_cols=87 Identities=13% Similarity=0.097 Sum_probs=45.4
Q ss_pred HHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHH--
Q 004470 482 LETANELLHEMCRKGLQL-NIYTYNSIVNGLCKAGNILQAVKLMEDMEVAGFHPDTFTYTTIMDAYCKSGEMVKAHEL-- 558 (751)
Q Consensus 482 ~~~A~~l~~~m~~~g~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~-- 558 (751)
+++.+.-++.-++.|--- -...|.++..-|.+++++++|++++..-. ..+.+.|+...|-++
T Consensus 13 ~~r~l~rl~~~I~~G~yYEAhQ~~Rtl~~Ry~~~~~~~eAidlL~~ga---------------~~ll~~~Q~~sa~DLa~ 77 (312)
T 2wpv_A 13 LAKTLQRFENKIKAGDYYEAHQTLRTIANRYVRSKSYEHAIELISQGA---------------LSFLKAKQGGSGTDLIF 77 (312)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH---------------HHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH---------------HHHHHCCCcchHHHHHH
Confidence 444444444444444111 12356666666666666666666654322 234556666555543
Q ss_pred --HHHHHhCCCCCCHHHHHHHHHHHHh
Q 004470 559 --LRDMLDKGLQPSVVTFNVLMNGFCM 583 (751)
Q Consensus 559 --~~~~~~~~~~p~~~~~~~li~~~~~ 583 (751)
++-..+.+.+++......++..+..
T Consensus 78 llvev~~~~~~~~~~~~~~rl~~l~~~ 104 (312)
T 2wpv_A 78 YLLEVYDLAEVKVDDISVARLVRLIAE 104 (312)
T ss_dssp HHHHHHHHTTCCCSHHHHHHHHHHHTT
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHH
Confidence 3333445666666666666655544
No 253
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=88.41 E-value=3.3 Score=34.34 Aligned_cols=68 Identities=12% Similarity=0.048 Sum_probs=47.5
Q ss_pred CCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 004470 638 TPDGNTYNILLQGHCKARN---MKEAWFLHKEMVQKGFNLTTSSYNALIKGFLKRKKYLEARELFEEMRRG 705 (751)
Q Consensus 638 ~p~~~~~~~li~~~~~~g~---~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 705 (751)
.|+..+--.+..++.+..+ ..+++.++++....++.-....+-.|+-++.+.|++++|++..+.+++.
T Consensus 37 ~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~ 107 (134)
T 3o48_A 37 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH 107 (134)
T ss_dssp GSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT
T ss_pred CCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh
Confidence 4666666666777776664 3467778887776653323456667777888888888888888888874
No 254
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=87.87 E-value=28 Score=36.16 Aligned_cols=189 Identities=13% Similarity=0.135 Sum_probs=95.3
Q ss_pred cCChhHHHHHHHHHHhC-----CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH----Hc
Q 004470 444 AGGMKKAFSLHNNMVHM-----RLTPNVVTYTALADGLCKSGELETANELLHEMCRKGLQLNIYTYNSIVNGLC----KA 514 (751)
Q Consensus 444 ~g~~~~A~~~~~~~~~~-----~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~~~~li~~~~----~~ 514 (751)
.|++++|++.+-.+.+. ...........++..+...|+++...+.+..+.+..-. -......+++.+. ..
T Consensus 29 ~~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~q-lk~ai~~~V~~~~~~l~~~ 107 (445)
T 4b4t_P 29 QNDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQ-LKLSIQYMIQKVMEYLKSS 107 (445)
T ss_dssp HHHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTT-SHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhh-hHHHHHHHHHHHHHHHhcC
Confidence 36788888877665532 23445677888999999999999998888776554222 1222333333222 22
Q ss_pred CCHHHHHH--HHHHHHH--CC-CCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--CCCCCC---HHHHHHHHHHH
Q 004470 515 GNILQAVK--LMEDMEV--AG-FHP---DTFTYTTIMDAYCKSGEMVKAHELLRDMLD--KGLQPS---VVTFNVLMNGF 581 (751)
Q Consensus 515 g~~~~A~~--~~~~~~~--~~-~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~p~---~~~~~~li~~~ 581 (751)
...+.... +.+.+.. .| +.. .......|...|...|++.+|.+++..+.. .|..+. ...+..-+..|
T Consensus 108 ~~~d~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~ 187 (445)
T 4b4t_P 108 KSLDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELS 187 (445)
T ss_dssp CTTHHHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 22221111 1111100 01 001 112234455666666677777666666642 121111 22344455556
Q ss_pred HhcCChhHHHHHHHHHHHc----CCCCC--HhhHHHHHHHHHHcCCHHHHHHHHHHHH
Q 004470 582 CMSGMIEDGEKLLKWMLEK----GLKPN--AATYNPLIKQHCLRNDMRTTAKIYKGMC 633 (751)
Q Consensus 582 ~~~g~~~~A~~l~~~~~~~----g~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 633 (751)
...+++..|..+++++... ...|+ ...+...+..+...+++.+|.+.|.++.
T Consensus 188 l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~ 245 (445)
T 4b4t_P 188 ILKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIY 245 (445)
T ss_dssp HHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 6666666666666554321 11111 1234444555555666666655555544
No 255
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=87.36 E-value=24 Score=34.75 Aligned_cols=189 Identities=13% Similarity=0.098 Sum_probs=116.9
Q ss_pred HHHHHHHHHHHHHcCCC---C-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 004470 482 LETANELLHEMCRKGLQ---L-NIYTYNSIVNGLCKAGNILQAVKLMEDMEVAGFHPDTFTYTTIMDAYCKSGEMVKAHE 557 (751)
Q Consensus 482 ~~~A~~l~~~m~~~g~~---~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 557 (751)
+++.++=++.-++.|-- - -..+|.++..-|.+++++++|++++..-. ..+.+.|+...|-+
T Consensus 12 ~~~~i~rl~~~I~~G~y~~~YEAHQ~~RTi~~Ry~~~k~y~eAidLL~~GA---------------~~ll~~~Q~~sg~D 76 (336)
T 3lpz_A 12 IERIIARLQRRIAEGQPEEQYEAAQETRLVAARYSKQGNWAAAVDILASVS---------------QTLLRSGQGGSGGD 76 (336)
T ss_dssp HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH---------------HHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCccccHHHHHHHHHHHHHHhhcCHHHHHHHHHHHH---------------HHHHHCCCcchHHH
Confidence 44445555555555421 1 12478888888999999999998875432 34677888877766
Q ss_pred HH----HHHHhCCCCCCHHHHHHHHHHHHhcCChh-HHHHHHHHHH----HcC--CCCCHhhHHHHHHHHHHcCCHHHHH
Q 004470 558 LL----RDMLDKGLQPSVVTFNVLMNGFCMSGMIE-DGEKLLKWML----EKG--LKPNAATYNPLIKQHCLRNDMRTTA 626 (751)
Q Consensus 558 ~~----~~~~~~~~~p~~~~~~~li~~~~~~g~~~-~A~~l~~~~~----~~g--~~p~~~~~~~l~~~~~~~g~~~~A~ 626 (751)
+- +-+.+.++++|......++..+.....-+ +=.++.++++ +.| ..-|......+...|.+.+++.+|.
T Consensus 77 L~~llvevy~~~~~~~~~~~~~rL~~L~~~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae 156 (336)
T 3lpz_A 77 LAVLLVDTFRQAGQRVDGASRGKLLGCLRLFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAE 156 (336)
T ss_dssp HHHHHHHHHHHHTCCCCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHH
Confidence 55 44556788999999999998887655422 1233333333 223 3346677788888999999999988
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004470 627 KIYKGMCAQGITPDGNTYNILLQGHCKARNMKEAWFLHKEMVQKGFNLTTSSYNALIKGFLKRKKYLEARELFEEMRR 704 (751)
Q Consensus 627 ~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 704 (751)
..|- .|-.+....|..++.-+...+...++ +..+-..++ -|.-.++...|..+++...+
T Consensus 157 ~H~i----lg~~~s~~~~a~mL~ew~~~~~~~e~--------------dlfiaRaVL-~yL~l~n~~~A~~~~~~f~~ 215 (336)
T 3lpz_A 157 KHLV----LGTKESPEVLARMEYEWYKQDESHTA--------------PLYCARAVL-PYLLVANVRAANTAYRIFTS 215 (336)
T ss_dssp HHHT----TSCTTHHHHHHHHHHHHHHTSCGGGH--------------HHHHHHHHH-HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHH----hcCCchHHHHHHHHHHHHHhcCCccH--------------HHHHHHHHH-HHHHhCCHHHHHHHHHHHHH
Confidence 8772 23333345664444444433322211 222222333 45557899999888877664
No 256
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=86.31 E-value=16 Score=43.37 Aligned_cols=83 Identities=14% Similarity=0.119 Sum_probs=42.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 004470 329 YNSVVRLLCKTSKVVEAETILREMMNQGIVPDN----VIYTTLIDGFCKMGNVAAAYRLFDEMRGLNIIPDLLTYTAIIC 404 (751)
Q Consensus 329 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~ 404 (751)
|..++..+-+.+.++.+.++-...++...+.+. ..|..+...+...|++++|...+-.+..... -......++.
T Consensus 902 Y~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~--r~~cLr~LV~ 979 (1139)
T 4fhn_B 902 YLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPL--KKSCLLDFVN 979 (1139)
T ss_dssp HHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSS--CHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHH--HHHHHHHHHH
Confidence 444455555555555555554444332111111 1355566666666777776666666654332 2344555666
Q ss_pred HHHhcCCHH
Q 004470 405 GFCLTGKMV 413 (751)
Q Consensus 405 ~~~~~g~~~ 413 (751)
.+|..|..+
T Consensus 980 ~lce~~~~~ 988 (1139)
T 4fhn_B 980 QLTKQGKIN 988 (1139)
T ss_dssp HHHHHCCHH
T ss_pred HHHhCCChh
Confidence 666555544
No 257
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=82.99 E-value=4.8 Score=41.14 Aligned_cols=68 Identities=13% Similarity=0.130 Sum_probs=43.9
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHH-----cCCCCCHhh
Q 004470 540 TTIMDAYCKSGEMVKAHELLRDMLDKGLQPSVVTFNVLMNGFCMSGMIEDGEKLLKWMLE-----KGLKPNAAT 608 (751)
Q Consensus 540 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~~~~-----~g~~p~~~~ 608 (751)
..++..+...|++++|...+..+.... +-+...|..+|.++.+.|+..+|++.|+.+.. .|+.|...+
T Consensus 175 ~~~~~~~l~~g~~~~a~~~l~~~~~~~-P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l 247 (388)
T 2ff4_A 175 TAKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTL 247 (388)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHH
Confidence 345556666777777777777666543 44666777777777777777777777766543 266665543
No 258
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=80.40 E-value=10 Score=35.83 Aligned_cols=117 Identities=13% Similarity=0.091 Sum_probs=79.0
Q ss_pred HHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHhcCC
Q 004470 614 KQHCLRNDMRTTAKIYKGMCAQGITPDGNTYNILLQGHCKARNMKEAWFLHKEMVQKGFNL--TTSSYNALIKGFLKRKK 691 (751)
Q Consensus 614 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~g~ 691 (751)
....+.|++++|++....-++.. +-|...-..|+..+|-.|+++.|.+-++...+..+.. ....|..+|.+-.
T Consensus 5 ~~ll~~g~L~~al~~~~~~VR~~-P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~~a~~yr~lI~aE~---- 79 (273)
T 1zbp_A 5 KNALSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKAAQ---- 79 (273)
T ss_dssp HHHTTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHH----
T ss_pred HHHHhCCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhHHHHHHHHHHHHHH----
Confidence 34568899999999999988864 4477777889999999999999999999988864331 1224444444321
Q ss_pred HHHHHHHHHHHHHCCCC-----CCHHHHHHHHHHH--HhcCChhHHHHHHHHHHHcC
Q 004470 692 YLEARELFEEMRRGGLV-----ADREIYYFFVDIN--FEEGNTEITLELCDAAIECY 741 (751)
Q Consensus 692 ~~~A~~~~~~~~~~~~~-----~~~~~~~~l~~~~--~~~g~~~~A~~~~~~~~~~~ 741 (751)
.=.+...-+-. ........++.++ ...|+.++|.++-+++.+.-
T Consensus 80 ------~R~~vfaG~~~P~~~g~~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A~e~a 130 (273)
T 1zbp_A 80 ------ARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELR 130 (273)
T ss_dssp ------HHHHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred ------HHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcC
Confidence 11122221111 1233444555544 45699999999999998864
No 259
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=78.37 E-value=10 Score=29.59 Aligned_cols=46 Identities=11% Similarity=0.132 Sum_probs=24.8
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 004470 625 TAKIYKGMCAQGITPDGNTYNILLQGHCKARNMKEAWFLHKEMVQK 670 (751)
Q Consensus 625 A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 670 (751)
..+-+..+...++.|++......+.+|.+.+++.-|+++++-...+
T Consensus 29 ~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K 74 (109)
T 1v54_E 29 LRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK 74 (109)
T ss_dssp HHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 3344444444455555555555555555555555555555555543
No 260
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=76.39 E-value=11 Score=29.44 Aligned_cols=62 Identities=13% Similarity=0.177 Sum_probs=49.1
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 004470 656 NMKEAWFLHKEMVQKGFNLTTSSYNALIKGFLKRKKYLEARELFEEMRRGGLVADREIYYFFV 718 (751)
Q Consensus 656 ~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 718 (751)
+.=+..+-++.+...++.|++.+....+.+|.+.+++.-|.++++....+- .+...+|..++
T Consensus 25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~-~~~~~iY~~~l 86 (109)
T 1v54_E 25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA-GPHKEIYPYVI 86 (109)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TTCTTHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh-cCchhhHHHHH
Confidence 344566777777778899999999999999999999999999999987752 34445566554
No 261
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=74.62 E-value=76 Score=32.08 Aligned_cols=24 Identities=8% Similarity=-0.164 Sum_probs=16.7
Q ss_pred ChhHHHHHHHHHHHcCCCCCCccc
Q 004470 726 NTEITLELCDAAIECYLVGKATDE 749 (751)
Q Consensus 726 ~~~~A~~~~~~~~~~~~~~~~~~~ 749 (751)
..+++...+-+++..|.....+|.
T Consensus 329 s~~evE~~L~~lI~dg~I~a~IDq 352 (394)
T 3txn_A 329 PMPQVEKKLSQMILDKKFSGILDQ 352 (394)
T ss_dssp CHHHHHHHHHHHHHTTSSCEEEET
T ss_pred CHHHHHHHHHHHHHCCCeeEEEcC
Confidence 567888888888877766554443
No 262
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=74.29 E-value=14 Score=38.23 Aligned_cols=98 Identities=10% Similarity=-0.045 Sum_probs=62.3
Q ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH---CCCCCCHHHHH-
Q 004470 607 ATYNPLIKQHCLRNDMRTTAKIYKGMCAQGITP--DGNTYNILLQGHCKARNMKEAWFLHKEMVQ---KGFNLTTSSYN- 680 (751)
Q Consensus 607 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p--~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~p~~~~~~- 680 (751)
.+...+...|.+.|+++.|.+.+.++......+ -...+-..++.+...+++..|...++++.. .+..|+.....
T Consensus 132 ~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk 211 (429)
T 4b4t_R 132 QAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYK 211 (429)
T ss_dssp SCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHH
Confidence 356677788888888888888888887632222 355666777788888888888888877654 23222222111
Q ss_pred -HHHHHHHhcCCHHHHHHHHHHHHH
Q 004470 681 -ALIKGFLKRKKYLEARELFEEMRR 704 (751)
Q Consensus 681 -~l~~~~~~~g~~~~A~~~~~~~~~ 704 (751)
.-+..+...++|.+|.+.|-++..
T Consensus 212 ~~~gl~~l~~r~f~~Aa~~f~e~~~ 236 (429)
T 4b4t_R 212 TYYGIHCLAVRNFKEAAKLLVDSLA 236 (429)
T ss_dssp HHHHHGGGGTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhChHHHHHHHHHHHhc
Confidence 112223456788887777776655
No 263
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=70.52 E-value=73 Score=30.08 Aligned_cols=62 Identities=11% Similarity=0.113 Sum_probs=47.0
Q ss_pred HHHhcCChHHHHHHHHHHHcCCCCCchhhhHHHHHHHHHhhhcCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCc
Q 004470 138 ISVAAKDLKTAHGLIHDFWAKPNLDASIAFTHFVERLIYTYKDWGSDPHVFDIFFQVLVEARKLNEARKLFEKLLNYGLV 217 (751)
Q Consensus 138 ~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~ 217 (751)
-+.+.+.+++|...+..-++.. |.+...-..|++.||-.|+++.|.+-++...+. .
T Consensus 6 ~ll~~g~L~~al~~~~~~VR~~----------------------P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l--~ 61 (273)
T 1zbp_A 6 NALSEGQLQQALELLIEAIKAS----------------------PKDASLRSSFIELLCIDGDFERADEQLMQSIKL--F 61 (273)
T ss_dssp HHTTTTCHHHHHHHHHHHHHTC----------------------TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--C
T ss_pred HHHhCCCHHHHHHHHHHHHHhC----------------------CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--C
Confidence 4556778888888777777665 777777778888899999999999888888776 5
Q ss_pred cCHHhH
Q 004470 218 ISVDSC 223 (751)
Q Consensus 218 p~~~~~ 223 (751)
|+....
T Consensus 62 p~~~~~ 67 (273)
T 1zbp_A 62 PEYLPG 67 (273)
T ss_dssp GGGHHH
T ss_pred chhhHH
Confidence 655433
No 264
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=68.81 E-value=44 Score=34.44 Aligned_cols=97 Identities=11% Similarity=0.006 Sum_probs=58.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHc---CCCCCHhh--HH
Q 004470 538 TYTTIMDAYCKSGEMVKAHELLRDMLDK--GLQPSVVTFNVLMNGFCMSGMIEDGEKLLKWMLEK---GLKPNAAT--YN 610 (751)
Q Consensus 538 ~~~~li~~~~~~g~~~~A~~~~~~~~~~--~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~---g~~p~~~~--~~ 610 (751)
+...+...|.+.|++++|.+.+.++.+. +...-...+-..+..+...+++..+....+++... +..|+... ..
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk~ 212 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYKT 212 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHHH
Confidence 4566777778888888888888877653 22233455666777777778888887777776532 22222211 01
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHH
Q 004470 611 PLIKQHCLRNDMRTTAKIYKGMCA 634 (751)
Q Consensus 611 ~l~~~~~~~g~~~~A~~~~~~m~~ 634 (751)
.-+..+...+++..|...|-+...
T Consensus 213 ~~gl~~l~~r~f~~Aa~~f~e~~~ 236 (429)
T 4b4t_R 213 YYGIHCLAVRNFKEAAKLLVDSLA 236 (429)
T ss_dssp HHHHGGGGTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhChHHHHHHHHHHHhc
Confidence 111123456777777777666554
No 265
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=68.04 E-value=1.1e+02 Score=31.01 Aligned_cols=132 Identities=11% Similarity=-0.002 Sum_probs=68.8
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHhC-CCccCHH---hHHHHHHHHHhCCCCHHHHHHHHHhchhcCCCcCHHHH--
Q 004470 186 HVFDIFFQVLVEARKLNEARKLFEKLLNY-GLVISVD---SCNLFLSRLSNTCDGLRMVVKSFTEFPELGICWNTASY-- 259 (751)
Q Consensus 186 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-g~~p~~~---~~~~ll~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-- 259 (751)
.+...|++.|.+.|+.++..+++...... +..|... ....++..+....+..+.-.++..+.++..-. +-.+|
T Consensus 20 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~-~~r~flr 98 (394)
T 3txn_A 20 QGILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQ-EKRTFLR 98 (394)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHH-TTCHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHH-HHHHHHH
Confidence 35678999999999999999998877542 1112222 22344444443344444444444444322110 10111
Q ss_pred ----HHHHHHHHhcCCHHHHHHHHHHHHhcCCCC-----CHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 004470 260 ----NIMIHCLCRFGKIKEAHLLLLQMELRGCSP-----DVVSFSTIINGYCYLGELQRVLKLIEEMQ 318 (751)
Q Consensus 260 ----~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-----~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 318 (751)
..|+..|...|++.+|.+++.++.+.--.. -...|-.-+..|...+++.++...+....
T Consensus 99 ~~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~ 166 (394)
T 3txn_A 99 QSLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSAR 166 (394)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 145666666666666666666654420000 12233344455555666666666665553
No 266
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=67.95 E-value=34 Score=30.67 Aligned_cols=53 Identities=23% Similarity=0.196 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 004470 657 MKEAWFLHKEMVQKGFNL-TTSSYNALIKGFLKRKKYLEARELFEEMRRGGLVA 709 (751)
Q Consensus 657 ~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 709 (751)
..++..+|..|...|+-- -+..|...+..+...|++++|.++|+.-++.+-.|
T Consensus 95 ~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P 148 (202)
T 3esl_A 95 FHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRP 148 (202)
T ss_dssp HHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred cCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 445555555555443221 23344444555555555555555555555544444
No 267
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=67.11 E-value=28 Score=28.78 Aligned_cols=45 Identities=11% Similarity=0.144 Sum_probs=25.3
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 004470 626 AKIYKGMCAQGITPDGNTYNILLQGHCKARNMKEAWFLHKEMVQK 670 (751)
Q Consensus 626 ~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 670 (751)
.+-++.+...++.|++......+.+|.+.+++.-|+++++-.+.+
T Consensus 73 rrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K 117 (152)
T 2y69_E 73 RKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK 117 (152)
T ss_dssp HHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHh
Confidence 333444444555566666666666666666666666666655544
No 268
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=64.25 E-value=50 Score=27.37 Aligned_cols=60 Identities=13% Similarity=0.174 Sum_probs=48.0
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 004470 658 KEAWFLHKEMVQKGFNLTTSSYNALIKGFLKRKKYLEARELFEEMRRGGLVADREIYYFFV 718 (751)
Q Consensus 658 ~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 718 (751)
=+..+-++.+...++.|++.+....+.+|.+.+++.-|.++++-...+- .+...+|..++
T Consensus 70 wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~-~~~~~iY~y~l 129 (152)
T 2y69_E 70 WELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA-GPHKEIYPYVI 129 (152)
T ss_dssp HHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TTCTTHHHHHH
T ss_pred HHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhc-CCchhhHHHHH
Confidence 3455666777778899999999999999999999999999999988752 44455676654
No 269
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=62.61 E-value=51 Score=25.60 Aligned_cols=48 Identities=13% Similarity=0.181 Sum_probs=19.3
Q ss_pred HHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Q 004470 512 CKAGNILQAVKLMEDMEVAGFHPDTFTYTTIMDAYCKSGEMVKAHELLRDMLDK 565 (751)
Q Consensus 512 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 565 (751)
...|++++|..+.+.+- .||...|..|.. .+.|..+++...+.++..+
T Consensus 51 mNrG~Yq~Al~l~~~~c----~pdlepw~ALce--~rlGl~s~le~rL~~la~s 98 (116)
T 2p58_C 51 MNRGDYASALQQGNKLA----YPDLEPWLALCE--YRLGLGSALESRLNRLARS 98 (116)
T ss_dssp HHTTCHHHHHHHHTTSC----CGGGHHHHHHHH--HHHTCHHHHHHHHHHHTTC
T ss_pred HcchhHHHHHHhcCCCC----CchHHHHHHHHH--HhcccHHHHHHHHHHHHhC
Confidence 34444444444433222 344444433322 2344444444444444333
No 270
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=60.69 E-value=43 Score=30.03 Aligned_cols=66 Identities=15% Similarity=0.024 Sum_probs=51.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCC
Q 004470 678 SYNALIKGFLKRKKYLEARELFEEMRRGGLV-ADREIYYFFVDINFEEGNTEITLELCDAAIECYLVG 744 (751)
Q Consensus 678 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 744 (751)
.|..+++.+ ..+...++..+|..|...|+- --+..|...+..+...|++++|.++|+..++..-.|
T Consensus 82 lWl~Ya~~~-~~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P 148 (202)
T 3esl_A 82 IWIWYINLF-LSNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRP 148 (202)
T ss_dssp HHHHHHHHH-STTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred HHHHHHHhh-cccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 344444433 255688999999999997764 456778899999999999999999999999876544
No 271
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=59.50 E-value=30 Score=36.26 Aligned_cols=68 Identities=9% Similarity=0.073 Sum_probs=52.4
Q ss_pred hhhHHHHHHHHHhcCChhHHHHHHHHHHhCCC-cc--CHHhHHHHHHHHHhCCCCHHHHHHHHHhchhcCC
Q 004470 185 PHVFDIFFQVLVEARKLNEARKLFEKLLNYGL-VI--SVDSCNLFLSRLSNTCDGLRMVVKSFTEFPELGI 252 (751)
Q Consensus 185 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~-~p--~~~~~~~ll~~l~~~~~~~~~a~~~~~~~~~~~~ 252 (751)
..+++.|++.|...+.+++|..+..+..--.. .+ ....|...+|.+....+++.+|.+.+..+...-+
T Consensus 231 a~l~nllLRnYL~~~~y~qA~~lvsk~~fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rkap 301 (523)
T 4b4t_S 231 AMLINLILRDFLNNGEVDSASDFISKLEYPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRKAP 301 (523)
T ss_dssp HHHHHHHHHHHHHSSCSTTHHHHHHHHCSCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSSCS
T ss_pred HHHHHHHHHHHHccCcHHHHHHHHhcCcCCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC
Confidence 45789999999999999999999998841100 11 1246667778888788999999999999877644
No 272
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=57.25 E-value=49 Score=25.66 Aligned_cols=18 Identities=11% Similarity=-0.034 Sum_probs=7.5
Q ss_pred HcCCHHHHHHHHHHHHhC
Q 004470 548 KSGEMVKAHELLRDMLDK 565 (751)
Q Consensus 548 ~~g~~~~A~~~~~~~~~~ 565 (751)
+.|..+++...+.++..+
T Consensus 80 rlGl~s~le~rL~~la~s 97 (115)
T 2uwj_G 80 HLGLGAALDRRLAGLGGS 97 (115)
T ss_dssp HTTCHHHHHHHHHHHHTC
T ss_pred hcccHHHHHHHHHHHHhC
Confidence 344444444444444333
No 273
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=55.26 E-value=59 Score=28.14 Aligned_cols=28 Identities=11% Similarity=-0.063 Sum_probs=18.3
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHcC
Q 004470 714 YYFFVDINFEEGNTEITLELCDAAIECY 741 (751)
Q Consensus 714 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 741 (751)
|+.++..+.+.|+.+||++.+.....++
T Consensus 117 y~l~a~lltq~g~r~EaI~y~~~Sf~~~ 144 (242)
T 3kae_A 117 ESLLGDLCTLSGYREEGIGHYVRSFGKS 144 (242)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhcCHHHhhhHhhhhcCCc
Confidence 4455566667777777777776655544
No 274
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=52.56 E-value=81 Score=26.81 Aligned_cols=53 Identities=8% Similarity=0.072 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 004470 658 KEAWFLHKEMVQKGFNL-TTSSYNALIKGFLKRKKYLEARELFEEMRRGGLVAD 710 (751)
Q Consensus 658 ~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 710 (751)
+++..+|..|..+|+-- -+..|...+..+...|++++|.++|+.-++.+-.|-
T Consensus 82 ~dp~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P~ 135 (152)
T 4a1g_A 82 SDLHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEPR 135 (152)
T ss_dssp SCHHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSH
T ss_pred CCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccH
Confidence 34777777777765432 355677777777788888888888888887766663
No 275
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=51.36 E-value=1.3e+02 Score=26.69 Aligned_cols=18 Identities=11% Similarity=0.159 Sum_probs=8.0
Q ss_pred CCHHHHHHHHHHHHHcCC
Q 004470 359 PDNVIYTTLIDGFCKMGN 376 (751)
Q Consensus 359 p~~~~~~~li~~~~~~g~ 376 (751)
++..+-...+.++.+.|+
T Consensus 124 ~~~~vr~~a~~aL~~~~~ 141 (211)
T 3ltm_A 124 EDWFVRIAAAFALGEIGD 141 (211)
T ss_dssp SSHHHHHHHHHHHHHHCC
T ss_pred CCHHHHHHHHHHHHHcCC
Confidence 344444444444444444
No 276
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=51.03 E-value=67 Score=29.28 Aligned_cols=23 Identities=26% Similarity=0.322 Sum_probs=11.1
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCC
Q 004470 301 YCYLGELQRVLKLIEEMQIKGLK 323 (751)
Q Consensus 301 ~~~~g~~~~A~~~~~~m~~~g~~ 323 (751)
.++.|+.+.+..+++.+.+.|..
T Consensus 16 A~~~g~~~~v~~Ll~~~~~~~~~ 38 (241)
T 1k1a_A 16 AVVQGNLPAVHRLVNLFQQGGRE 38 (241)
T ss_dssp HHHTTCHHHHHHHHHHHHHTTCC
T ss_pred HHHcCCHHHHHHHHHHHHhcCCC
Confidence 34455555555555544444433
No 277
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=49.48 E-value=2.6e+02 Score=32.19 Aligned_cols=91 Identities=13% Similarity=0.063 Sum_probs=51.1
Q ss_pred cCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCccCHHhHHHHHHHHHhCCCCHHHHHHHHHhchhcCCCcCHHHH
Q 004470 180 DWGSDPHVFDIFFQVLVEARKLNEARKLFEKLLNYGLVISVDSCNLFLSRLSNTCDGLRMVVKSFTEFPELGICWNTASY 259 (751)
Q Consensus 180 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 259 (751)
-|+.+|..-.+++++|...|++++|.+.|+++. .|+..+...... ......++..... ......-|
T Consensus 835 ~~~~t~~~~yv~gr~~L~~ge~~~A~~~F~kAA-~gl~~~~~~~~~-----------~~~~~~ll~~~e~--~~~~~~YY 900 (950)
T 4gq2_M 835 WLNSDPIAVYLKALIYLKSKEAVKAVRCFKTTS-LVLYSHTSQFAV-----------LREFQEIAEKYHH--QNLLSCYY 900 (950)
T ss_dssp GCCSSHHHHHHHHHHHHHTTCHHHHHHHHHTCC-CTTCSSCCSCGG-----------GHHHHHHHHHTTT--CSHHHHHH
T ss_pred hcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHh-hhcccCcccccc-----------hhhhhhccCcccc--cchhHHHH
Confidence 346677666788888888888888888888764 233222110000 0001111111100 01123356
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHh
Q 004470 260 NIMIHCLCRFGKIKEAHLLLLQMEL 284 (751)
Q Consensus 260 ~~li~~~~~~g~~~~A~~~~~~m~~ 284 (751)
..++..+-+.+-++-+.++-+...+
T Consensus 901 ~hV~~LFE~~~a~~~vi~fA~lAI~ 925 (950)
T 4gq2_M 901 LHLSKKLFEESAYIDALEFSLLADA 925 (950)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHh
Confidence 7777778888888888777776654
No 278
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=48.48 E-value=1.1e+02 Score=26.41 Aligned_cols=53 Identities=13% Similarity=0.179 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH
Q 004470 659 EAWFLHKEMVQKGFNL-TTSSYNALIKGFLKRKKYLEARELFEEMRRGGLVADR 711 (751)
Q Consensus 659 ~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 711 (751)
++..+|..|...|+-- -+..|...+..+-..|++.+|.++|+..++.+-.|-.
T Consensus 78 ~p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P~~ 131 (164)
T 2wvi_A 78 EPLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKAEPLE 131 (164)
T ss_dssp CHHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHH
T ss_pred CHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHH
Confidence 3666777777765432 3456677777777778888888888887777666644
No 279
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=44.75 E-value=3.3e+02 Score=29.40 Aligned_cols=116 Identities=11% Similarity=0.019 Sum_probs=68.0
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHH----HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHH
Q 004470 375 GNVAAAYRLFDEMRGLNIIPDLLTYT----AIICGFCLTGKMVEAEKLFHEMLGRGLEPDEIVYTALIDGYCKAGGMKKA 450 (751)
Q Consensus 375 g~~~~A~~~~~~m~~~~~~p~~~~~~----~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A 450 (751)
.+.+.|...+....+...- +..... .+...+...+...++...+...... ..+.....-.+....+.|+++.|
T Consensus 228 ~d~~~A~~~~~~~~~~~~~-~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~e~~~r~Alr~~d~~~a 304 (618)
T 1qsa_A 228 QDAENARLMIPSLAQAQQL-NEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMR--SQSTSLIERRVRMALGTGDRRGL 304 (618)
T ss_dssp HCHHHHHHHHHHHHHHTTC-CHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHT--CCCHHHHHHHHHHHHHHTCHHHH
T ss_pred cCHHHHHHHHHhhhhccCC-CHHHHHHHHHHHHHHHHHcCCChHHHHHHHhcccc--CCChHHHHHHHHHHHHCCCHHHH
Confidence 3778888888777543322 322222 2222333344345666666665543 23443444455555677888888
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004470 451 FSLHNNMVHMRLTPNVVTYTALADGLCKSGELETANELLHEMCR 494 (751)
Q Consensus 451 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 494 (751)
...|+.|..... .......-+..++...|+.++|..+|+.+..
T Consensus 305 ~~~~~~l~~~~~-~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 305 NTWLARLPMEAK-EKDEWRYWQADLLLERGREAEAKEILHQLMQ 347 (618)
T ss_dssp HHHHHHSCTTGG-GSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHcccccc-ccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 888888765321 1333444566677778888888888888764
No 280
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=42.89 E-value=64 Score=27.43 Aligned_cols=52 Identities=12% Similarity=0.153 Sum_probs=43.7
Q ss_pred HHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCC
Q 004470 693 LEARELFEEMRRGGLVA-DREIYYFFVDINFEEGNTEITLELCDAAIECYLVG 744 (751)
Q Consensus 693 ~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 744 (751)
+++..+|..|..+|+-- -+..|...+..+...|++++|.++++..++..-.|
T Consensus 82 ~dp~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P 134 (152)
T 4a1g_A 82 SDLHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEP 134 (152)
T ss_dssp SCHHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred CCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 44889999999987744 56778889999999999999999999999876544
No 281
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=42.70 E-value=2.4e+02 Score=27.91 Aligned_cols=71 Identities=14% Similarity=0.198 Sum_probs=36.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC--HHHHHHHHHHHHHCCCCCCHHHHH
Q 004470 644 YNILLQGHCKARNMKEAWFLHKEMVQKGFNLTTSSYNALIKGFLKRKK--YLEARELFEEMRRGGLVADREIYY 715 (751)
Q Consensus 644 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~--~~~A~~~~~~~~~~~~~~~~~~~~ 715 (751)
...++.-|...|+.+||.+.++++..-.+. ...+...+..++-+.++ .+...+++..+...|+-+......
T Consensus 220 i~~lL~EY~~s~D~~EA~~ci~EL~~p~fh-he~V~~av~~aLE~~~~~~re~~~~LL~~L~~~glls~~q~~~ 292 (358)
T 3eiq_C 220 IDMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQMKR 292 (358)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHCCTTCH-HHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHHHHH
T ss_pred HHHHHHHhccCCCHHHHHHHHHHccCCcch-HHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCCCHHHHHH
Confidence 355666666777777777777766421111 22334444444444332 344566666666666544443333
No 282
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=42.34 E-value=2.2e+02 Score=26.63 Aligned_cols=29 Identities=14% Similarity=-0.054 Sum_probs=14.7
Q ss_pred ChhhHHHHHHHHHhcCChhHHHHHHHHHHh
Q 004470 184 DPHVFDIFFQVLVEARKLNEARKLFEKLLN 213 (751)
Q Consensus 184 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 213 (751)
++.+-..-+.++.+.|. .++...+.+++.
T Consensus 36 ~~~vr~~A~~~L~~~~~-~~~~~~L~~~l~ 64 (280)
T 1oyz_A 36 NSLKRISSARVLQLRGG-QDAVRLAIEFCS 64 (280)
T ss_dssp SHHHHHHHHHHHHHHCC-HHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHccCC-chHHHHHHHHHc
Confidence 34444445555555553 345555555554
No 283
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=42.03 E-value=53 Score=30.90 Aligned_cols=8 Identities=0% Similarity=0.023 Sum_probs=3.5
Q ss_pred HHhcCCHH
Q 004470 266 LCRFGKIK 273 (751)
Q Consensus 266 ~~~~g~~~ 273 (751)
.++.|+.+
T Consensus 12 A~~~g~~~ 19 (285)
T 1wdy_A 12 AVQNEDVD 19 (285)
T ss_dssp HHHTTCHH
T ss_pred HHHcCCHH
Confidence 34444443
No 284
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=41.97 E-value=1.4e+02 Score=27.49 Aligned_cols=30 Identities=23% Similarity=0.238 Sum_probs=18.6
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 004470 359 PDNVIYTTLIDGFCKMGNVAAAYRLFDEMR 388 (751)
Q Consensus 359 p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 388 (751)
++.......+..+.+.|+-++|.++|-+..
T Consensus 89 ~~~~~~r~~v~~L~rLg~~~~A~~lfL~~r 118 (235)
T 2d2s_A 89 NEIVHLKSGTENMIKLGLPEQALDLFLQNR 118 (235)
T ss_dssp SSHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHCCChhHHHHHHHHHH
Confidence 345555556666677777777777665543
No 285
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=40.48 E-value=88 Score=25.71 Aligned_cols=63 Identities=14% Similarity=0.117 Sum_probs=32.4
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC--HHHHHHHHHHHHHCCC
Q 004470 609 YNPLIKQHCLRNDMRTTAKIYKGMCAQGITPDGNTYNILLQGHCKARN--MKEAWFLHKEMVQKGF 672 (751)
Q Consensus 609 ~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~--~~~A~~~~~~~~~~~~ 672 (751)
...++.-|...|+.++|.+.++++..-.. -...+...+..++-+.++ .+...+++..+...|+
T Consensus 10 i~~ll~EY~~~~D~~Ea~~cl~eL~~p~f-~~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~ 74 (129)
T 2nsz_A 10 IDMLLKEYLLSGDISEAEHCLKELEVPHF-HHELVYEAIVMVLESTGESAFKMILDLLKSLWKSST 74 (129)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGGG-HHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhCCCcc-HHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCC
Confidence 45566667777777777777777642100 012223333444444322 3445556666655543
No 286
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=39.02 E-value=80 Score=27.16 Aligned_cols=52 Identities=12% Similarity=0.149 Sum_probs=24.0
Q ss_pred hcCCHHHHHHHHHHHHHCCCCC--CHHHHHHHHH------HHHhcCChhHHHHHHHHHHH
Q 004470 688 KRKKYLEARELFEEMRRGGLVA--DREIYYFFVD------INFEEGNTEITLELCDAAIE 739 (751)
Q Consensus 688 ~~g~~~~A~~~~~~~~~~~~~~--~~~~~~~l~~------~~~~~g~~~~A~~~~~~~~~ 739 (751)
..|++=+|-++++..-...-.+ +...|..|+. ...+.||..-|..++.+++.
T Consensus 44 n~g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~ 103 (161)
T 2ijq_A 44 NSGEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQ 103 (161)
T ss_dssp HTTCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred hCCCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 3455555555555554432223 2333333333 12344555555555555544
No 287
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=38.59 E-value=88 Score=26.99 Aligned_cols=52 Identities=10% Similarity=0.082 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCC
Q 004470 693 LEARELFEEMRRGGLVA-DREIYYFFVDINFEEGNTEITLELCDAAIECYLVG 744 (751)
Q Consensus 693 ~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 744 (751)
+++..+|..|...|+-- -+..|...+..+-..|++.+|.++|+..++..-.|
T Consensus 77 ~~p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P 129 (164)
T 2wvi_A 77 NEPLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKAEP 129 (164)
T ss_dssp SCHHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred CCHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCc
Confidence 34778999999987744 56778889999999999999999999999877444
No 288
>3mv2_A Coatomer subunit alpha; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_A
Probab=37.34 E-value=2.5e+02 Score=27.27 Aligned_cols=136 Identities=10% Similarity=-0.014 Sum_probs=0.0
Q ss_pred HHhcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc---CCH
Q 004470 581 FCMSGMIEDGEKLLKWMLEKGLKPNAATYNPLIKQHCLRNDMRTTAKIYKGMCAQGITPDGNTYNILLQGHCKA---RNM 657 (751)
Q Consensus 581 ~~~~g~~~~A~~l~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~---g~~ 657 (751)
+...|++++|+..|+.++.. ..+.......+.+++.++.....+ .....-+..-.+. .+.
T Consensus 124 ~~t~gKf~eAl~~Fr~iL~~----------i~l~~v~~~~e~~e~~eli~icrE-------Yilal~iEl~Rr~l~~~~~ 186 (325)
T 3mv2_A 124 NFKLNKPDIAIECFREAIYR----------ITLLMVDDAEDEKLAHKILETARE-------YILGLSIELERRSLKEGNT 186 (325)
T ss_dssp HHHTTCHHHHHHHHHHHHHH----------HHTCCBCSSHHHHHHHHHHHHHHH-------HHHHHHHHHHHHTCCTTCH
T ss_pred HHhcCCHHHHHHHHHHHHHH----------hheeeeccHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHhcCcccH
Q ss_pred HHHHHHHHHHHHCCCCCCHH--HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHH
Q 004470 658 KEAWFLHKEMVQKGFNLTTS--SYNALIKGFLKRKKYLEARELFEEMRRGGLVADREIYYFFVDINFEEGNTEITLELCD 735 (751)
Q Consensus 658 ~~A~~~~~~~~~~~~~p~~~--~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 735 (751)
...+++---+-.-.+.|.-. ++..-+....|.+++..|..+.+++++.+-.++ ..++|.+++.
T Consensus 187 kR~lELAAYFT~c~LQp~H~~LaLr~AM~~a~K~KNy~tAa~fArrLLel~p~~~---------------~a~qArkil~ 251 (325)
T 3mv2_A 187 VRMLELAAYFTKAKLSPIHRTNALQVAMSQHFKHKNFLQASYFAGEFLKIISSGP---------------RAEQARKIKN 251 (325)
T ss_dssp HHHHHHHHHGGGSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSH---------------HHHHHHHHHH
T ss_pred HHHHHHHHHhccCCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCHH---------------HHHHHHHHHH
Q ss_pred HHHHcCCCCCCcc
Q 004470 736 AAIECYLVGKATD 748 (751)
Q Consensus 736 ~~~~~~~~~~~~~ 748 (751)
..-+.+...-++|
T Consensus 252 ~ce~~~~Da~eid 264 (325)
T 3mv2_A 252 KADSMASDAIPID 264 (325)
T ss_dssp HHHTSCCCSSCCS
T ss_pred HHhcCCCCccccC
No 289
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=35.50 E-value=89 Score=28.41 Aligned_cols=85 Identities=14% Similarity=0.166 Sum_probs=41.2
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCCHHH--HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccH--HHHHHHHHh
Q 004470 263 IHCLCRFGKIKEAHLLLLQMELRGCSPDVVS--FSTIINGYCYLGELQRVLKLIEEMQIKGLKPNPYTY--NSVVRLLCK 338 (751)
Q Consensus 263 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~--~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~--~~li~~~~~ 338 (751)
+..-++.|+.+-...+++.+.+.|..++... -.+.+...+..|+.+- ++.+.+.|..++.... .+.+...+.
T Consensus 13 L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~----v~~Ll~~g~~~~~~~~~g~t~l~~A~~ 88 (241)
T 1k1a_A 13 LHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSV----VRLLVTAGASPMALDRHGQTAAHLACE 88 (241)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHH----HHHHHHTTCCTTCCCTTSCCHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCCCcccccCCCHHHHHHHcCCHHH----HHHHHHcCCCccccCCCCCCHHHHHHH
Confidence 3344566777777666666555554333211 1123344455666543 3333445544443221 133444555
Q ss_pred cCCHHHHHHHHHH
Q 004470 339 TSKVVEAETILRE 351 (751)
Q Consensus 339 ~g~~~~A~~~~~~ 351 (751)
.|+.+-...+++.
T Consensus 89 ~~~~~~~~~Ll~~ 101 (241)
T 1k1a_A 89 HRSPTCLRALLDS 101 (241)
T ss_dssp TTCHHHHHHHHHH
T ss_pred cCCHHHHHHHHHc
Confidence 6666555444443
No 290
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=34.72 E-value=63 Score=29.47 Aligned_cols=54 Identities=15% Similarity=0.156 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 004470 657 MKEAWFLHKEMVQKGFNL-TTSSYNALIKGFLKRKKYLEARELFEEMRRGGLVAD 710 (751)
Q Consensus 657 ~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 710 (751)
.+++..+|..|...|+-- -...|...+..+...|++++|.++|+.-++.+-.|-
T Consensus 130 ~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P~ 184 (223)
T 4aez_C 130 IDEPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRMKAKPF 184 (223)
T ss_dssp CSCHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCBSH
T ss_pred cCCHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccH
Confidence 357788999998876543 456788888889999999999999999998777773
No 291
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=34.62 E-value=72 Score=29.93 Aligned_cols=81 Identities=12% Similarity=-0.029 Sum_probs=39.7
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcc---cHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH--HHHHHHHH
Q 004470 296 TIINGYCYLGELQRVLKLIEEMQIKGLKPNPY---TYNSVVRLLCKTSKVVEAETILREMMNQGIVPDNV--IYTTLIDG 370 (751)
Q Consensus 296 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~---~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~--~~~~li~~ 370 (751)
+.+...++.|+.+....++ +.|..++.. .-.+.+...+..|+.+- ++.+.+.|..++.. ...+.+..
T Consensus 7 ~~L~~A~~~g~~~~v~~Ll----~~g~~~~~~~~~~g~t~L~~A~~~g~~~~----v~~Ll~~g~~~~~~~~~g~t~L~~ 78 (285)
T 1wdy_A 7 HLLIKAVQNEDVDLVQQLL----EGGANVNFQEEEGGWTPLHNAVQMSREDI----VELLLRHGADPVLRKKNGATPFLL 78 (285)
T ss_dssp HHHHHHHHTTCHHHHHHHH----HTTCCTTCCCTTTCCCHHHHHHHTTCHHH----HHHHHHTTCCTTCCCTTCCCHHHH
T ss_pred hHHHHHHHcCCHHHHHHHH----HcCCCcccccCCCCCcHHHHHHHcCCHHH----HHHHHHcCCCCcccCCCCCCHHHH
Confidence 4455567788876555444 445444322 11234555666777654 44445555544321 11123344
Q ss_pred HHHcCCHHHHHHHH
Q 004470 371 FCKMGNVAAAYRLF 384 (751)
Q Consensus 371 ~~~~g~~~~A~~~~ 384 (751)
.++.|+.+-+..++
T Consensus 79 A~~~~~~~~v~~Ll 92 (285)
T 1wdy_A 79 AAIAGSVKLLKLFL 92 (285)
T ss_dssp HHHHTCHHHHHHHH
T ss_pred HHHcCCHHHHHHHH
Confidence 45566655444333
No 292
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=34.61 E-value=71 Score=28.97 Aligned_cols=8 Identities=13% Similarity=0.165 Sum_probs=3.5
Q ss_pred HHhcCCHH
Q 004470 476 LCKSGELE 483 (751)
Q Consensus 476 ~~~~g~~~ 483 (751)
.+..|+.+
T Consensus 184 A~~~~~~~ 191 (240)
T 3eu9_A 184 AVLAGNTT 191 (240)
T ss_dssp HHHHTCHH
T ss_pred HHHcCCHH
Confidence 34444443
No 293
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=33.99 E-value=1.8e+02 Score=26.79 Aligned_cols=90 Identities=11% Similarity=0.047 Sum_probs=42.7
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHH--CCCCC----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 004470 612 LIKQHCLRNDMRTTAKIYKGMCA--QGITP----DGNTYNILLQGHCKARNMKEAWFLHKEMVQKGFNLTTSSYNALIKG 685 (751)
Q Consensus 612 l~~~~~~~g~~~~A~~~~~~m~~--~g~~p----~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~ 685 (751)
-++.+....++++|.+++++..+ .++.+ +.......+..-.....-.-+..+.+++ .. .+++......+..
T Consensus 24 eLDv~IA~r~feeAv~lle~~~~~l~~~~~~~~~~~~~~~~~l~~ki~eR~~~L~~~L~~~l-~~--~~~~~~~r~~v~~ 100 (235)
T 2d2s_A 24 EIDIELARLRFESAVETLLDIESQLEDLSERISDEELMLLNLISLKIEQRREAISSKLSQSI-LS--SNEIVHLKSGTEN 100 (235)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTC-------CHHHHHHHHHHHHHHHHHHHHHHHHH-HT--CSSHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHhCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHH-Hh--cCCHHHHHHHHHH
Confidence 45666777777777777776554 11221 0011111122222222222233333333 22 3345555555666
Q ss_pred HHhcCCHHHHHHHHHHHHH
Q 004470 686 FLKRKKYLEARELFEEMRR 704 (751)
Q Consensus 686 ~~~~g~~~~A~~~~~~~~~ 704 (751)
+.+.|+-++|.++|-+...
T Consensus 101 L~rLg~~~~A~~lfL~~rs 119 (235)
T 2d2s_A 101 MIKLGLPEQALDLFLQNRS 119 (235)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHCCChhHHHHHHHHHHH
Confidence 6666766666666665543
No 294
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=32.55 E-value=2.1e+02 Score=29.43 Aligned_cols=140 Identities=11% Similarity=0.092 Sum_probs=76.7
Q ss_pred CChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 004470 585 GMIEDGEKLLKWMLEKGLKPNAATYNPLIKQHCLRNDMRTTAKIYKGMCAQGITPDGNTYNILLQGHCKARNMKEAWFLH 664 (751)
Q Consensus 585 g~~~~A~~l~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~ 664 (751)
.+.+-|.++-. +.|++--...|..-...+...|++++|.++--..-+ |+--+..|.+.+-..=...|...--+.+|
T Consensus 343 ~n~~lA~~lA~---R~~LpGAd~L~~~~F~~l~~~g~y~~AA~~aA~sP~-giLRt~~Ti~rFk~vp~~pgq~splL~YF 418 (494)
T 1bpo_A 343 QNPDLALRMAV---RNNLAGAEELFARKFNALFAQGNYSEAAKVAANAPK-GILRTPDTIRRFQSVPAQPGQTSPLLQYF 418 (494)
T ss_dssp CCHHHHHHHHH---HTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSGG-GSSCSHHHHHHHTTSCCCTTSCCHHHHHH
T ss_pred CCHHHHHHHHH---hcCCccHHHHHHHHHHHHHHcCCHHHHHHHHHhCcc-ccccCHHHHHHHhcCCCCCCCCCHHHHHH
Confidence 55555554433 334444445566666677777888887777655443 44456666655444434445666667777
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 004470 665 KEMVQKGFNLTTSSYNALIKGFLKRKKYLEARELFEEMRRGGLVADREIYYFFVDINFEEGNTEITLELCDAA 737 (751)
Q Consensus 665 ~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 737 (751)
..+.+.|- .+..--..+++.-...|+.+-..+++.+ ..+....+ |++.. +..+..-|..+|.++
T Consensus 419 ~~Ll~~g~-Ln~~ESlEl~r~vL~q~r~~llekWl~e---~KL~~SEe----LGDlv-k~~d~~LAl~IY~~a 482 (494)
T 1bpo_A 419 GILLDQGQ-LNKYESLELCRPVLQQGRKQLLEKWLKE---DKLECSEE----LGDLV-KSVDPTLALSVYLRA 482 (494)
T ss_dssp HHHHHHSC-CCHHHHHHHHHHHHHTTCHHHHHHHHHH---TCSCCCHH----HHHHH-HHHCSHHHHHHHHHH
T ss_pred HHHhccCc-cchHHhhHHhHHHHhccHHHHHHHHHhc---CCccccHH----hHhhh-hhcCHHHHHHHHHHc
Confidence 77777653 3544444555555666665443333322 22333333 22222 444667777777665
No 295
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=31.08 E-value=2.1e+02 Score=28.03 Aligned_cols=25 Identities=16% Similarity=0.203 Sum_probs=17.8
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHh
Q 004470 260 NIMIHCLCRFGKIKEAHLLLLQMEL 284 (751)
Q Consensus 260 ~~li~~~~~~g~~~~A~~~~~~m~~ 284 (751)
..++.-|...|+.++|...++++..
T Consensus 15 ~~ll~Ey~~~~d~~Ea~~ci~el~~ 39 (339)
T 1ug3_A 15 KAIIEEYLHLNDMKEAVQCVQELAS 39 (339)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHTTCC
T ss_pred HHHHHHHHhCCCHHHHHHHHHHcCC
Confidence 4566677777888888777777653
No 296
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=30.70 E-value=90 Score=26.55 Aligned_cols=64 Identities=14% Similarity=0.101 Sum_probs=37.0
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC--HHHHHHHHHHHHHCCCC
Q 004470 609 YNPLIKQHCLRNDMRTTAKIYKGMCAQGITPDGNTYNILLQGHCKARN--MKEAWFLHKEMVQKGFN 673 (751)
Q Consensus 609 ~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~--~~~A~~~~~~~~~~~~~ 673 (751)
...++.-|...|+.++|.+.++++..-.. -...+...+..++-+.++ .+.+..++..+...++-
T Consensus 12 i~~lL~EY~~~~D~~EA~~cl~EL~~p~f-~~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~i 77 (152)
T 2ion_A 12 IDMLLKEYLLSGDISEAEHCLKELEVPHF-HHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTI 77 (152)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGGG-HHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCS
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHhCCCcc-hHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCc
Confidence 46677778888888888888888742100 012333444444444322 34556666666665543
No 297
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=30.22 E-value=1.6e+02 Score=24.12 Aligned_cols=24 Identities=17% Similarity=0.378 Sum_probs=14.3
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHH
Q 004470 365 TTLIDGFCKMGNVAAAYRLFDEMR 388 (751)
Q Consensus 365 ~~li~~~~~~g~~~~A~~~~~~m~ 388 (751)
..++.-|...|+.++|.+.++++.
T Consensus 11 ~~ll~EY~~~~D~~Ea~~cl~eL~ 34 (129)
T 2nsz_A 11 DMLLKEYLLSGDISEAEHCLKELE 34 (129)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHT
T ss_pred HHHHHHHHcCCCHHHHHHHHHHhC
Confidence 445555666666666666666654
No 298
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=27.53 E-value=2.1e+02 Score=27.62 Aligned_cols=25 Identities=16% Similarity=0.380 Sum_probs=18.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHH
Q 004470 469 YTALADGLCKSGELETANELLHEMC 493 (751)
Q Consensus 469 ~~~li~~~~~~g~~~~A~~l~~~m~ 493 (751)
...++.-|...|+.++|...++++.
T Consensus 6 ~~~ii~EYf~~~d~~Ea~~~l~el~ 30 (307)
T 2zu6_B 6 LTPIIQEYFEHGDTNEVAEMLRDLN 30 (307)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHTTC
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhC
Confidence 3566777778888888888887764
No 299
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=27.02 E-value=1.5e+02 Score=26.96 Aligned_cols=51 Identities=6% Similarity=-0.056 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 004470 624 TTAKIYKGMCAQGITPD-GNTYNILLQGHCKARNMKEAWFLHKEMVQKGFNL 674 (751)
Q Consensus 624 ~A~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p 674 (751)
.+.++|..|...|+--. ...|......+...|++++|.++|+..++.+-.|
T Consensus 132 ~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P 183 (223)
T 4aez_C 132 EPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRMKAKP 183 (223)
T ss_dssp CHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCBS
T ss_pred CHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 55566666666655443 4446666666666677777777777666655444
No 300
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=26.91 E-value=4.7e+02 Score=25.82 Aligned_cols=26 Identities=19% Similarity=0.234 Sum_probs=22.2
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHH
Q 004470 187 VFDIFFQVLVEARKLNEARKLFEKLL 212 (751)
Q Consensus 187 ~~~~l~~~~~~~g~~~~A~~~~~~~~ 212 (751)
....++.-|...|+.++|...++.+.
T Consensus 56 ~~~~ii~EYf~~~d~~Ea~~~l~eL~ 81 (358)
T 3eiq_C 56 TLTPIIQEYFEHGDTNEVAEMLRDLN 81 (358)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHTTT
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHhC
Confidence 45678999999999999999999864
No 301
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=26.73 E-value=2.3e+02 Score=22.09 Aligned_cols=77 Identities=13% Similarity=-0.046 Sum_probs=40.2
Q ss_pred hHHHHHHHHhhhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHcCCCCCchhhhHHHHHHHHHhhhcCCCChhhHHH
Q 004470 111 YRLVLDFFDWACLRREPILEARCIVVQISVAAKDLKTAHGLIHDFWAKPNLDASIAFTHFVERLIYTYKDWGSDPHVFDI 190 (751)
Q Consensus 111 ~~~al~~f~~~~~~~~~~~~~~~~~~~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 190 (751)
.+.|..+-+|...... .--.-.+.+..|.+.|+|++|..+.+... .|..-..
T Consensus 22 HqEA~tIAdwL~~~~~-~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c---------------------------~pdlepw 73 (115)
T 2uwj_G 22 HEEALCIAEWLERLGQ-DEAARLIRISSLANQGRYQEALAFAHGNP---------------------------WPALEPW 73 (115)
T ss_dssp HHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHTTCHHHHHGGGTTCC---------------------------CGGGHHH
T ss_pred HHHHHHHHHHHHhCCc-HHHHHHHHHHHHHcchhHHHHHHhcCCCC---------------------------CchHHHH
Confidence 3566666677655433 22222333445566777777765444321 2222233
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCC
Q 004470 191 FFQVLVEARKLNEARKLFEKLLNYG 215 (751)
Q Consensus 191 l~~~~~~~g~~~~A~~~~~~~~~~g 215 (751)
++-+-.+.|..+++..-+.++-..|
T Consensus 74 ~ALce~rlGl~s~le~rL~~la~sg 98 (115)
T 2uwj_G 74 FALCEWHLGLGAALDRRLAGLGGSS 98 (115)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTCS
T ss_pred HHHHHHhcccHHHHHHHHHHHHhCC
Confidence 4444456677666666665555554
No 302
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=25.39 E-value=2.4e+02 Score=21.97 Aligned_cols=43 Identities=14% Similarity=0.056 Sum_probs=22.5
Q ss_pred hHHHHHHHHhhhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHH
Q 004470 111 YRLVLDFFDWACLRREPILEARCIVVQISVAAKDLKTAHGLIHD 154 (751)
Q Consensus 111 ~~~al~~f~~~~~~~~~~~~~~~~~~~~l~~~~~~~~a~~~l~~ 154 (751)
.+.|..+-+|...... .--.-.+.+..|.+.|+|++|..+.+.
T Consensus 23 HqEA~tIAdwL~~~~~-~E~v~lIR~sSLmNrG~Yq~Al~l~~~ 65 (116)
T 2p58_C 23 HEEANCIAEWLHLKGE-EEAVQLIRLSSLMNRGDYASALQQGNK 65 (116)
T ss_dssp HHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHTTCHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhCCc-HHHHHHHHHHHHHcchhHHHHHHhcCC
Confidence 3566666666655433 222223334445566777776665544
No 303
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=25.30 E-value=89 Score=29.73 Aligned_cols=17 Identities=29% Similarity=0.216 Sum_probs=7.7
Q ss_pred HHHHHcCCHHHHHHHHH
Q 004470 369 DGFCKMGNVAAAYRLFD 385 (751)
Q Consensus 369 ~~~~~~g~~~~A~~~~~ 385 (751)
...+..|+.+-+.-+++
T Consensus 166 ~~A~~~g~~~~v~~Ll~ 182 (285)
T 3kea_A 166 HITIKNGHVDMMILLLD 182 (285)
T ss_dssp HHHHHTTCHHHHHHHHH
T ss_pred HHHHHcChHHHHHHHHH
Confidence 33344555544444443
No 304
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=25.29 E-value=1.1e+02 Score=27.59 Aligned_cols=11 Identities=9% Similarity=0.105 Sum_probs=4.8
Q ss_pred CCCHHHHHHHH
Q 004470 234 CDGLRMVVKSF 244 (751)
Q Consensus 234 ~~~~~~a~~~~ 244 (751)
.|+.+.+..++
T Consensus 52 ~~~~~~v~~Ll 62 (240)
T 3eu9_A 52 NNRIDLVKYYI 62 (240)
T ss_dssp TTCHHHHHHHH
T ss_pred hCCHHHHHHHH
Confidence 35544444333
No 305
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=25.25 E-value=33 Score=32.12 Aligned_cols=25 Identities=12% Similarity=-0.074 Sum_probs=13.0
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCCC
Q 004470 266 LCRFGKIKEAHLLLLQMELRGCSPD 290 (751)
Q Consensus 266 ~~~~g~~~~A~~~~~~m~~~g~~p~ 290 (751)
.++.|+.+....+++.+.+.|..++
T Consensus 12 A~~~g~~~~v~~ll~~l~~~~~~~~ 36 (260)
T 3jxi_A 12 IVSRGSPDGLEGLLSFLLTHKKRLT 36 (260)
T ss_dssp HHHHTCGGGGTTHHHHHHHHTCCTT
T ss_pred HHHhCCHHHHHHHHHHHHhcCCCcc
Confidence 3455666655555555544444333
No 306
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=24.64 E-value=1.4e+02 Score=28.36 Aligned_cols=8 Identities=25% Similarity=0.480 Sum_probs=3.2
Q ss_pred HHcCCHHH
Q 004470 372 CKMGNVAA 379 (751)
Q Consensus 372 ~~~g~~~~ 379 (751)
+..|+.+-
T Consensus 103 ~~~g~~~~ 110 (285)
T 3kea_A 103 VDSGNMQT 110 (285)
T ss_dssp HHTTCHHH
T ss_pred HHcCCHHH
Confidence 34444433
No 307
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=24.37 E-value=5.6e+02 Score=29.40 Aligned_cols=28 Identities=21% Similarity=0.254 Sum_probs=19.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 004470 678 SYNALIKGFLKRKKYLEARELFEEMRRG 705 (751)
Q Consensus 678 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 705 (751)
-|..++..+-+.+-++-+.++.+.+++.
T Consensus 899 YY~hV~~LFE~~~a~~~vi~fA~lAI~~ 926 (950)
T 4gq2_M 899 YYLHLSKKLFEESAYIDALEFSLLADAS 926 (950)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhh
Confidence 5666666666777777777777777663
No 308
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=24.04 E-value=35 Score=31.91 Aligned_cols=56 Identities=7% Similarity=-0.021 Sum_probs=34.3
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCccc-------HHHHHHHHH--hcCCHHHHHHHHHHHH
Q 004470 298 INGYCYLGELQRVLKLIEEMQIKGLKPNPYT-------YNSVVRLLC--KTSKVVEAETILREMM 353 (751)
Q Consensus 298 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~-------~~~li~~~~--~~g~~~~A~~~~~~m~ 353 (751)
+...++.|+.+....+++.+.+.|..++... .+.|..+.. +.|+.+-+..+++.-.
T Consensus 9 L~~A~~~g~~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~ 73 (260)
T 3jxi_A 9 LFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIAE 73 (260)
T ss_dssp HHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhcc
Confidence 4455678888888888887777766555333 233333322 5677776666666543
No 309
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=23.41 E-value=3.9e+02 Score=25.77 Aligned_cols=25 Identities=4% Similarity=0.025 Sum_probs=14.9
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHhchh
Q 004470 224 NLFLSRLSNTCDGLRMVVKSFTEFPE 249 (751)
Q Consensus 224 ~~ll~~l~~~~~~~~~a~~~~~~~~~ 249 (751)
..++..++ ..|+.++|...++++..
T Consensus 7 ~~ii~EYf-~~~d~~Ea~~~l~el~~ 31 (307)
T 2zu6_B 7 TPIIQEYF-EHGDTNEVAEMLRDLNL 31 (307)
T ss_dssp HHHHHHHH-HHCCHHHHHHHHHTTCC
T ss_pred HHHHHHHH-cCCCHHHHHHHHHHhCC
Confidence 44555555 34677777777766543
No 310
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=23.05 E-value=3.3e+02 Score=26.17 Aligned_cols=12 Identities=25% Similarity=0.349 Sum_probs=5.2
Q ss_pred HHHHHHCCCCCC
Q 004470 629 YKGMCAQGITPD 640 (751)
Q Consensus 629 ~~~m~~~g~~p~ 640 (751)
.+-+++.|-.||
T Consensus 317 v~~Ll~~GA~~d 328 (337)
T 4g8k_A 317 VKVLLSHGAKED 328 (337)
T ss_dssp HHHHHHTTCCC-
T ss_pred HHHHHHCcCCCC
Confidence 344445554444
No 311
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=22.93 E-value=1.5e+02 Score=31.16 Aligned_cols=63 Identities=16% Similarity=0.069 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC---CH--HHH-HHHHHHHHhcCCHHHHHHHHHHHHHC
Q 004470 641 GNTYNILLQGHCKARNMKEAWFLHKEMVQKGFNL---TT--SSY-NALIKGFLKRKKYLEARELFEEMRRG 705 (751)
Q Consensus 641 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p---~~--~~~-~~l~~~~~~~g~~~~A~~~~~~~~~~ 705 (751)
...+|.+++.|...+.++.|.++..+.. -+.. +. ..| -.++..+.-.++|.+|.+.+..+.++
T Consensus 231 a~l~nllLRnYL~~~~y~qA~~lvsk~~--fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rk 299 (523)
T 4b4t_S 231 AMLINLILRDFLNNGEVDSASDFISKLE--YPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRK 299 (523)
T ss_dssp HHHHHHHHHHHHHSSCSTTHHHHHHHHC--SCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSS
T ss_pred HHHHHHHHHHHHccCcHHHHHHHHhcCc--CCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 4457777777777788888877777663 1211 11 112 23455556677777777777777664
No 312
>3mkr_B Coatomer subunit alpha; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=22.75 E-value=5.3e+02 Score=24.94 Aligned_cols=136 Identities=10% Similarity=0.072 Sum_probs=0.0
Q ss_pred HHhcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc------
Q 004470 581 FCMSGMIEDGEKLLKWMLEKGLKPNAATYNPLIKQHCLRNDMRTTAKIYKGMCAQGITPDGNTYNILLQGHCKA------ 654 (751)
Q Consensus 581 ~~~~g~~~~A~~l~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~------ 654 (751)
+...|++++|+..|+.++.. ..+.......+.+++.++.....+ .....-+..-.+.
T Consensus 112 ~~t~gKf~eAl~~Fr~iL~~----------i~l~~v~~~~e~~e~~eli~icre-------Yilal~iEl~Rr~l~~~~~ 174 (320)
T 3mkr_B 112 LTTVGKFEEAVEKFRSILLS----------VPLLVVDNKQEIAEAQQLITICRE-------YIVGLSMETERKKLPKETL 174 (320)
T ss_dssp HHHTTCHHHHHHHHHHHHHH----------GGGCCCCSHHHHHHHHHHHHHHHH-------HHHHHHHHHHHTTSCCCSH
T ss_pred HHhcCCHHHHHHHHHHHHHH----------hhheeeccHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHhcccCCc
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHH--HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHH
Q 004470 655 RNMKEAWFLHKEMVQKGFNLTTS--SYNALIKGFLKRKKYLEARELFEEMRRGGLVADREIYYFFVDINFEEGNTEITLE 732 (751)
Q Consensus 655 g~~~~A~~~~~~~~~~~~~p~~~--~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 732 (751)
.+....+++---+-.-.+.|... ++..-+....+.+++..|..+.+++++ +.|+... .++|.+
T Consensus 175 ~~~kR~lELAAYFT~c~Lqp~H~~LaLr~AM~~a~K~KNy~tAa~fArrLLe--l~p~~~~-------------~~qArk 239 (320)
T 3mkr_B 175 EQQKRICEMAAYFTHSNLQPVHMILVLRTALNLFFKLKNFRTAAAFARRLLE--LGPKPEV-------------AQQTRK 239 (320)
T ss_dssp HHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTBHHHHHHHHHHHHH--TCCCHHH-------------HHHHHH
T ss_pred hhHHHHHHHHHHhccCCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh--cCCCHHH-------------HHHHHH
Q ss_pred HHHHHHHcCCCCCCcc
Q 004470 733 LCDAAIECYLVGKATD 748 (751)
Q Consensus 733 ~~~~~~~~~~~~~~~~ 748 (751)
++...-+.+...-.+|
T Consensus 240 il~~ce~~~~da~eid 255 (320)
T 3mkr_B 240 ILSACEKNPTDAYQLN 255 (320)
T ss_dssp HHHHHHHSCCBSSCCS
T ss_pred HHHHHhcCCCCccccC
No 313
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=22.56 E-value=1.5e+02 Score=25.09 Aligned_cols=24 Identities=17% Similarity=0.378 Sum_probs=13.8
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHH
Q 004470 365 TTLIDGFCKMGNVAAAYRLFDEMR 388 (751)
Q Consensus 365 ~~li~~~~~~g~~~~A~~~~~~m~ 388 (751)
..++.-|...|+.++|.+.++++.
T Consensus 13 ~~lL~EY~~~~D~~EA~~cl~EL~ 36 (152)
T 2ion_A 13 DMLLKEYLLSGDISEAEHCLKELE 36 (152)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHT
T ss_pred HHHHHHHHhCCCHHHHHHHHHHhC
Confidence 445555555666666666666553
No 314
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=22.46 E-value=4.6e+02 Score=24.21 Aligned_cols=18 Identities=0% Similarity=-0.029 Sum_probs=7.2
Q ss_pred CCHHHHHHHHHHHHHcCC
Q 004470 359 PDNVIYTTLIDGFCKMGN 376 (751)
Q Consensus 359 p~~~~~~~li~~~~~~g~ 376 (751)
++..+-...+.++.+.|+
T Consensus 140 ~~~~vR~~a~~aL~~~~~ 157 (280)
T 1oyz_A 140 KSTNVRRATAFAISVIND 157 (280)
T ss_dssp SCHHHHHHHHHHHHTC--
T ss_pred CCHHHHHHHHHHHHhcCC
Confidence 344444444444444443
No 315
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=21.97 E-value=6.5e+02 Score=25.69 Aligned_cols=137 Identities=10% Similarity=0.069 Sum_probs=77.6
Q ss_pred CHHHHHHHHHHHHhC--------CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCC-C---CCHhhHHHHHHHHHH
Q 004470 551 EMVKAHELLRDMLDK--------GLQPSVVTFNVLMNGFCMSGMIEDGEKLLKWMLEKGL-K---PNAATYNPLIKQHCL 618 (751)
Q Consensus 551 ~~~~A~~~~~~~~~~--------~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~g~-~---p~~~~~~~l~~~~~~ 618 (751)
..++...+++..... ++..+......++.. ..|+..++..+++.+..... . ....+...+
T Consensus 166 ~~edi~~il~~~l~~~~~~~~~~~~~i~~~al~~L~~~--~~Gd~R~lln~Le~a~~~a~~~~~~~~~It~e~v------ 237 (447)
T 3pvs_A 166 STEDIEQVLTQAMEDKTRGYGGQDIVLPDETRRAIAEL--VNGDARRALNTLEMMADMAEVDDSGKRVLKPELL------ 237 (447)
T ss_dssp CHHHHHHHHHHHHHCTTTSSTTSSEECCHHHHHHHHHH--HCSCHHHHHHHHHHHHHHSCBCTTSCEECCHHHH------
T ss_pred CHHHHHHHHHHHHHHHhhhhccccCcCCHHHHHHHHHH--CCCCHHHHHHHHHHHHHhcccccCCCCccCHHHH------
Confidence 456667777776653 233466666666655 46888888888888765422 1 011222211
Q ss_pred cCCHHHHHHHHHHHHHCCC---CC-CHHHHHHHHHHH---HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 004470 619 RNDMRTTAKIYKGMCAQGI---TP-DGNTYNILLQGH---CKARNMKEAWFLHKEMVQKGFNLTTSSYNALIKGFLKRKK 691 (751)
Q Consensus 619 ~g~~~~A~~~~~~m~~~g~---~p-~~~~~~~li~~~---~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 691 (751)
++...... .. ....| .++.++ .+.++.+.|+..+.+|++.|..|....-..+..+.-.-|.
T Consensus 238 -----------~~~l~~~~~~~dk~gd~~y-d~isal~ksirgsd~daAl~~la~ml~~Gedp~~i~rrl~~~a~edig~ 305 (447)
T 3pvs_A 238 -----------TEIAGERSARFDNKGDRFY-DLISALHKSVRGSAPDAALYWYARIITAGGDPLYVARRCLAIASEDVGN 305 (447)
T ss_dssp -----------HHHHTCCCCC---CCHHHH-HHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTGG
T ss_pred -----------HHHHhhhhhccCCccchHH-HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcccC
Confidence 22222110 01 12233 233333 3567899999999999998877665555555655555553
Q ss_pred -----HHHHHHHHHHHHHCCC
Q 004470 692 -----YLEARELFEEMRRGGL 707 (751)
Q Consensus 692 -----~~~A~~~~~~~~~~~~ 707 (751)
..-|...++.....|.
T Consensus 306 a~p~a~~~~~~~~~~~~~~g~ 326 (447)
T 3pvs_A 306 ADPRAMQVAIAAWDCFTRVGP 326 (447)
T ss_dssp GCTHHHHHHHHHHHHHHHSCH
T ss_pred CChhHHHHHHHHHHHHHHhCC
Confidence 3345556666666774
No 316
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=21.86 E-value=2.3e+02 Score=24.64 Aligned_cols=64 Identities=11% Similarity=0.049 Sum_probs=30.6
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCccc---HHHHHHHHHh-cCCHHHHHHHHHHHHHCCCCCC
Q 004470 297 IINGYCYLGELQRVLKLIEEMQIKGLKPNPYT---YNSVVRLLCK-TSKVVEAETILREMMNQGIVPD 360 (751)
Q Consensus 297 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~---~~~li~~~~~-~g~~~~A~~~~~~m~~~g~~p~ 360 (751)
.+...+..|+.+.-.++.+.+.+.|..++... .+.|..++.. ..+.....++.+.+++.|..++
T Consensus 41 ~Lh~A~~~~~~~~~~~iv~~Ll~~Gadvn~~d~~g~TpLh~a~~~~~~~~~~~~~iv~~Ll~~Gadin 108 (186)
T 3t8k_A 41 ILYDVLRNNNDEARYKISMFLINKGADIKSRTKEGTTLFFPLFQGGGNDITGTTELCKIFLEKGADIT 108 (186)
T ss_dssp HHHHHTTCSCHHHHHHHHHHHHHTTCCSSCCCTTCCCTHHHHHHHCTTCHHHHHHHHHHHHHTTCCSS
T ss_pred HHHHHHHcCCcchHHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCcchhhHHHHHHHHHHCCCCCC
Confidence 34444555655555556666666666555432 2222222111 2233344555666666665544
No 317
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=21.33 E-value=3.9e+02 Score=22.86 Aligned_cols=53 Identities=13% Similarity=0.075 Sum_probs=35.1
Q ss_pred HHcCCHHHHHHHHHHHHhCCCCC--CHHHHHHHHH-H-----HHhcCChhHHHHHHHHHHH
Q 004470 547 CKSGEMVKAHELLRDMLDKGLQP--SVVTFNVLMN-G-----FCMSGMIEDGEKLLKWMLE 599 (751)
Q Consensus 547 ~~~g~~~~A~~~~~~~~~~~~~p--~~~~~~~li~-~-----~~~~g~~~~A~~l~~~~~~ 599 (751)
...|++-+|.++++..-.....+ ....|..||+ . ..+.|+...|..++.+...
T Consensus 43 Fn~g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~ 103 (161)
T 2ijq_A 43 YNSGEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQ 103 (161)
T ss_dssp HHTTCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred HhCCCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 44588888888888887654344 4455666666 2 2346777777777777665
No 318
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=21.23 E-value=4.2e+02 Score=23.18 Aligned_cols=17 Identities=12% Similarity=0.196 Sum_probs=6.9
Q ss_pred CHHHHHHHHHHHHHcCC
Q 004470 360 DNVIYTTLIDGFCKMGN 376 (751)
Q Consensus 360 ~~~~~~~li~~~~~~g~ 376 (751)
+..+-...+..+.+.|+
T Consensus 32 ~~~vR~~A~~~L~~~~~ 48 (211)
T 3ltm_A 32 SYYVRRAAAYALGKIGD 48 (211)
T ss_dssp SHHHHHHHHHHHHHHCC
T ss_pred CHHHHHHHHHHHHHhCC
Confidence 33333334444444443
No 319
>2r9g_A AAA ATPase, central region; structural genomics, PSI-2, protein structure initia YORK SGX research center for structural genomics, nysgxrc; 2.09A {Enterococcus faecium} SCOP: a.80.1.2 PDB: 2qw6_A
Probab=21.17 E-value=4.4e+02 Score=23.45 Aligned_cols=16 Identities=19% Similarity=0.430 Sum_probs=6.3
Q ss_pred CHHHHHHHHHHHHHcC
Q 004470 481 ELETANELLHEMCRKG 496 (751)
Q Consensus 481 ~~~~A~~l~~~m~~~g 496 (751)
+.+.|+-.+-+|++.|
T Consensus 29 DpDAAly~LaRml~~G 44 (204)
T 2r9g_A 29 DVDAALHYLARLVEAG 44 (204)
T ss_dssp CHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHcC
Confidence 3333333333343333
No 320
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=20.92 E-value=3.4e+02 Score=22.71 Aligned_cols=34 Identities=26% Similarity=0.282 Sum_probs=14.0
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Q 004470 480 GELETANELLHEMCRKGLQLNIYTYNSIVNGLCK 513 (751)
Q Consensus 480 g~~~~A~~l~~~m~~~g~~~~~~~~~~li~~~~~ 513 (751)
+..-.|.++++.+.+.+...+..|....++.+..
T Consensus 40 ~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e 73 (150)
T 2xig_A 40 GTHLSPEEITHSIRQKDKNTSISSVYRILNFLEK 73 (150)
T ss_dssp SSCBCHHHHHHHHHHHSTTCCHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHH
Confidence 3333444444444444433344443333333333
No 321
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=20.89 E-value=3.8e+02 Score=24.18 Aligned_cols=40 Identities=10% Similarity=0.123 Sum_probs=28.0
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhCCCccCHHhHHHHHHHHH
Q 004470 190 IFFQVLVEARKLNEARKLFEKLLNYGLVISVDSCNLFLSRLS 231 (751)
Q Consensus 190 ~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~l~ 231 (751)
..+.+|.+.|.+++|.+++++.... .++......-|..+.
T Consensus 119 qAV~VCiek~~f~kA~eiLkr~~~~--~~s~~kLr~kL~~II 158 (235)
T 3bu8_A 119 AAVIICIKNKEFEKASKILKKHMSK--DPTTQKLRNDLLNII 158 (235)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHSTT--CGGGHHHHHHHHHHH
T ss_pred HHHHHHHHhcchHHHHHHHHHHhcC--CCCchHHHHHHHHHH
Confidence 4566788999999999999998765 445544444444444
No 322
>2cwy_A Hypothetical protein TTHA0068; structural genomics, conserved hypothetical protein, NPPSFA; 1.85A {Thermus thermophilus} SCOP: a.246.2.1 PDB: 2cxd_A
Probab=20.55 E-value=1.4e+02 Score=22.85 Aligned_cols=51 Identities=16% Similarity=0.113 Sum_probs=24.6
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH-----HHHhcCChhHHHHHHHHHHH
Q 004470 687 LKRKKYLEARELFEEMRRGGLVADREIYYFFVD-----INFEEGNTEITLELCDAAIE 739 (751)
Q Consensus 687 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~-----~~~~~g~~~~A~~~~~~~~~ 739 (751)
...|++=+|-++++..-...-.|....|..++. ...+.|+. |.+++.++++
T Consensus 12 fn~g~~~eaHEvlE~~W~~~~~~~~~~~qGLIq~Ava~~h~~~gn~--a~~ll~~a~~ 67 (94)
T 2cwy_A 12 WRAGRYYEVHEVLEPYWLKATGEERRLLQGVILLAAALHQRRLGRP--GLRNLRKAEA 67 (94)
T ss_dssp HHTTCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHTTCC--CHHHHHHHHH
T ss_pred HhCCChHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHHHHcCcH--HHHHHHHHHH
Confidence 344666666666666554331122333433332 22345555 6666666554
No 323
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=20.54 E-value=1.3e+02 Score=26.28 Aligned_cols=13 Identities=8% Similarity=0.061 Sum_probs=5.4
Q ss_pred HHcCCHHHHHHHH
Q 004470 372 CKMGNVAAAYRLF 384 (751)
Q Consensus 372 ~~~g~~~~A~~~~ 384 (751)
+..|+.+-+..++
T Consensus 80 ~~~~~~~~~~~Ll 92 (201)
T 3hra_A 80 GAQGRTEILAYML 92 (201)
T ss_dssp HHTTCHHHHHHHH
T ss_pred HHcCCHHHHHHHH
Confidence 3444444433333
No 324
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=20.25 E-value=2.9e+02 Score=23.11 Aligned_cols=38 Identities=16% Similarity=0.074 Sum_probs=16.2
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 004470 653 KARNMKEAWFLHKEMVQKGFNLTTSSYNALIKGFLKRK 690 (751)
Q Consensus 653 ~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 690 (751)
..+..-.|.++++.+.+.++..+..|...-+..+...|
T Consensus 38 ~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G 75 (150)
T 2xig_A 38 RSGTHLSPEEITHSIRQKDKNTSISSVYRILNFLEKEN 75 (150)
T ss_dssp HCSSCBCHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTT
T ss_pred hCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCC
Confidence 33334444555555544444444444333333343333
No 325
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=20.19 E-value=7e+02 Score=25.42 Aligned_cols=138 Identities=14% Similarity=0.061 Sum_probs=73.9
Q ss_pred CHHHHHHHHHHHHHC--------CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCC-C---CCHHHHHHHHHHHHh
Q 004470 516 NILQAVKLMEDMEVA--------GFHPDTFTYTTIMDAYCKSGEMVKAHELLRDMLDKGL-Q---PSVVTFNVLMNGFCM 583 (751)
Q Consensus 516 ~~~~A~~~~~~~~~~--------~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-~---p~~~~~~~li~~~~~ 583 (751)
..++...++...... ++..+......++.. ..|+..++..+++.+..... . ....+..
T Consensus 166 ~~edi~~il~~~l~~~~~~~~~~~~~i~~~al~~L~~~--~~Gd~R~lln~Le~a~~~a~~~~~~~~~It~e-------- 235 (447)
T 3pvs_A 166 STEDIEQVLTQAMEDKTRGYGGQDIVLPDETRRAIAEL--VNGDARRALNTLEMMADMAEVDDSGKRVLKPE-------- 235 (447)
T ss_dssp CHHHHHHHHHHHHHCTTTSSTTSSEECCHHHHHHHHHH--HCSCHHHHHHHHHHHHHHSCBCTTSCEECCHH--------
T ss_pred CHHHHHHHHHHHHHHHhhhhccccCcCCHHHHHHHHHH--CCCCHHHHHHHHHHHHHhcccccCCCCccCHH--------
Confidence 456777777776553 233456666666655 57888888888888764321 0 0011111
Q ss_pred cCChhHHHHHHHHHHHcCC---CCCHhhHHHHHHHH---HHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC-
Q 004470 584 SGMIEDGEKLLKWMLEKGL---KPNAATYNPLIKQH---CLRNDMRTTAKIYKGMCAQGITPDGNTYNILLQGHCKARN- 656 (751)
Q Consensus 584 ~g~~~~A~~l~~~~~~~g~---~p~~~~~~~l~~~~---~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~- 656 (751)
.+.+...... ..+...+-.++.++ .+.++.+.|+.++.+|++.|..|....-..++.+.-..|.
T Consensus 236 ---------~v~~~l~~~~~~~dk~gd~~yd~isal~ksirgsd~daAl~~la~ml~~Gedp~~i~rrl~~~a~edig~a 306 (447)
T 3pvs_A 236 ---------LLTEIAGERSARFDNKGDRFYDLISALHKSVRGSAPDAALYWYARIITAGGDPLYVARRCLAIASEDVGNA 306 (447)
T ss_dssp ---------HHHHHHTCCCCC---CCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTGGG
T ss_pred ---------HHHHHHhhhhhccCCccchHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcccCC
Confidence 1122222110 00111111222332 3567899999999999998876665555555555555553
Q ss_pred ----HHHHHHHHHHHHHCCC
Q 004470 657 ----MKEAWFLHKEMVQKGF 672 (751)
Q Consensus 657 ----~~~A~~~~~~~~~~~~ 672 (751)
..-|...++.....|.
T Consensus 307 ~p~a~~~~~~~~~~~~~~g~ 326 (447)
T 3pvs_A 307 DPRAMQVAIAAWDCFTRVGP 326 (447)
T ss_dssp CTHHHHHHHHHHHHHHHSCH
T ss_pred ChhHHHHHHHHHHHHHHhCC
Confidence 2334445555555553
Done!