BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 004471
(751 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9SZL8|FRS5_ARATH Protein FAR1-RELATED SEQUENCE 5 OS=Arabidopsis thaliana GN=FRS5
PE=2 SV=1
Length = 788
Score = 40.4 bits (93), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 78/383 (20%), Positives = 146/383 (38%), Gaps = 64/383 (16%)
Query: 315 SFEEGYRLLPQYCEQVKRTNPGSIASVYGNPADNCFQRLFISFQASIYGFLNACRPLLGL 374
S E +LL Y Q+ NP SV G+ D +F + +I F + +
Sbjct: 245 SIEGEIQLLLDYLRQMNADNPNFFYSVQGSE-DQSVGNVFWADPKAIMDFTHFG-DTVTF 302
Query: 375 DRTFLKSKYLGTLLLATGFDGDGALFPLAFG--VVDEENDDNWMWFLSELHNLLEINTEN 432
D T+ ++Y TG + G P+ FG + E + +++W L N
Sbjct: 303 DTTYRSNRYRLPFAPFTGVNHHGQ--PILFGCAFIINETEASFVW----LFNTWLAAMSA 356
Query: 433 MPRLTILSDRQKGIVDGVEANFPTAFHGFCMRHLSESFRKEFNNTILVNLLWEAAH---- 488
P ++I +D I + FP A H FC H+ + +++ ++ L + +E+
Sbjct: 357 HPPVSITTDHDAVIRAAIMHVFPGARHRFCKWHILKKCQEKLSHVFLKHPSFESDFHKCV 416
Query: 489 --ALTVIEFEA---KILEIEEISQDAAYWIRRIPP--RLWATAYFEGTRFG-----HLTA 536
+V +FE +L+ E+ W++ I R W Y T F H +
Sbjct: 417 NLTESVEDFERCWFSLLDKYELRDHE--WLQAIYSDRRQWVPVYLRDTFFADMSLTHRSD 474
Query: 537 NIVESLNSWILEASGL-----------------------------PIIQMMECIRRQLMT 567
+I + +I ++ L P+++ + +Q
Sbjct: 475 SINSYFDGYINASTNLSQFFKLYEKALESRLEKEVKADYDTMNSPPVLKTPSPMEKQASE 534
Query: 568 WFNERRETSMQWTSILVPSAERRVAEALERAR--TYQVLRANEAEFEVISHEGTNIVDIR 625
+ R+ M++ LV + ++A + TYQV + EA N++++R
Sbjct: 535 LYT--RKLFMRFQEELVGTLTFMASKADDDGDLVTYQVAKYGEA--HKAHFVKFNVLEMR 590
Query: 626 NRCCLCRGWQLYGLPCAHAVAAL 648
C C+ ++ G+ C H +A
Sbjct: 591 ANCS-CQMFEFSGIICRHILAVF 612
>sp|Q58842|FAEHP_METJA Bifunctional enzyme fae/hps OS=Methanocaldococcus jannaschii
(strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC
100440) GN=fae-hps PE=1 SV=1
Length = 381
Score = 38.5 bits (88), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 40/146 (27%), Positives = 62/146 (42%), Gaps = 23/146 (15%)
Query: 210 DKTRFTAKCAAEGCPWRIHAAKLPGV-PTFTI-RTIHESHTCGGISHLGHQQASVQWVAN 267
D R + A E +A + GV P TI + IHE CG IS+L S
Sbjct: 225 DTGRVEVRLAFEATA---NAVAISGVAPKSTIIKAIHECQKCGLISYLDMMNVSEP---- 277
Query: 268 SVEQRLRENPNYKPKEILEEIHR-VHGITLSYKQAWRGKERIMAAMRG--SFEEGYRLLP 324
Q+L ++ KP ++ +HR + T K+ W+ KE + A+ G E LL
Sbjct: 278 ---QKLYDSLKLKPDVVI--LHRGIDEETFGIKKEWKFKENCLLAIAGGVGVENVEELLK 332
Query: 325 QYCEQV------KRTNPGSIASVYGN 344
+Y + K +PG + ++ N
Sbjct: 333 EYQILIVGRAITKSKDPGRVIRMFIN 358
>sp|Q9SSQ4|FRS6_ARATH Protein FAR1-RELATED SEQUENCE 6 OS=Arabidopsis thaliana GN=FRS6
PE=2 SV=1
Length = 703
Score = 37.7 bits (86), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 37/182 (20%), Positives = 73/182 (40%), Gaps = 29/182 (15%)
Query: 371 LLGLDRTFLKSKYLGTLLLATGFDGDGALFPLAFGVVDEENDDNWMWFLSELHNLLEINT 430
++ +D +++ K+ L+ TG + G L+ G + E +++ W L ++++ +
Sbjct: 297 VIFIDSSYISGKFEIPLVTFTGVNHHGKTTLLSCGFLAGETMESYHWLLKVWLSVMKRSP 356
Query: 431 ENMPRLTILSDRQKGIVDGVEANFPTAFHGFCMRHL-------------SESFRKEFNNT 477
+ TI++DR K + + FP + F + H+ ++ RK F
Sbjct: 357 Q-----TIVTDRCKPLEAAISQVFPRSHQRFSLTHIMRKIPEKLGGLHNYDAVRKAFTKA 411
Query: 478 ILVNLLWEAAHALTVIEFEAKI-LEIEEISQDAAYWIRRIPPR--LWATAYFEGTRFGHL 534
+ L V+EFEA + W+R + WA Y + T F +
Sbjct: 412 VY--------ETLKVVEFEAAWGFMVHNFGVIENEWLRSLYEERAKWAPVYLKDTFFAGI 463
Query: 535 TA 536
A
Sbjct: 464 AA 465
>sp|Q9SWG3|FAR1_ARATH Protein FAR-RED IMPAIRED RESPONSE 1 OS=Arabidopsis thaliana GN=FAR1
PE=1 SV=1
Length = 827
Score = 37.4 bits (85), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 37/165 (22%), Positives = 75/165 (45%), Gaps = 7/165 (4%)
Query: 315 SFEEG-YRLLPQYCEQVKRTNPGSIASVYGNPADNCFQRLFISFQASIYGFLNACRPLLG 373
+ EEG ++L +Y +++K+ NP ++ N D + LF + S +L + ++
Sbjct: 220 ALEEGDSQVLLEYFKRIKKENPKFFYAIDLN-EDQRLRNLFWADAKSRDDYL-SFNDVVS 277
Query: 374 LDRTFLKSKYLGTLLLATGFDGDGALFPLAFGVVDEENDDNWMWFLSELHNLLEINTENM 433
D T++K L L G + L +V +E+ + ++W + L
Sbjct: 278 FDTTYVKFNDKLPLALFIGVNHHSQPMLLGCALVADESMETFVWLIK---TWLRAMGGRA 334
Query: 434 PRLTILSDRQKGIVDGVEANFPTAFHGFCMRHLSESFRKEFNNTI 478
P++ IL+D+ K ++ V P H F + H+ E + F++ +
Sbjct: 335 PKV-ILTDQDKFLMSAVSELLPNTRHCFALWHVLEKIPEYFSHVM 378
>sp|P01045|KNG2_BOVIN Kininogen-2 OS=Bos taurus GN=KNG2 PE=1 SV=1
Length = 619
Score = 36.6 bits (83), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 23/47 (48%), Positives = 26/47 (55%), Gaps = 4/47 (8%)
Query: 39 ELGQTHEHHLDLGQQN--HELGLGHPHDHDLDLGQNHDQEGGDGHGY 83
E G TH H D G+Q H LGLGH H H D G H + G GHG+
Sbjct: 419 EQGPTHGHGWDHGKQIKLHGLGLGHKHKH--DQGHGHHRSHGLGHGH 463
>sp|Q01989|MYS9_DROME Myosin heavy chain 95F OS=Drosophila melanogaster GN=jar PE=2 SV=4
Length = 1253
Score = 36.6 bits (83), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 30/116 (25%), Positives = 55/116 (47%), Gaps = 7/116 (6%)
Query: 371 LLGLDRTFLKSKYLGTLLLATG--FDGDGALFPLAFGVVDEENDDNWMWFLSELHN-LLE 427
LLG+D+T L++ + ++ + G F G + PL D S L + ++
Sbjct: 378 LLGVDQTELRTALVSRVMQSKGGGFKGTVIMVPLKIYEASNARDALAKAIYSRLFDRIVG 437
Query: 428 INTENMPRLTILSDRQKGIVD--GVEANFPTAFHGFCMRHLSESFRKEFNNTILVN 481
+ +++P S+ G++D G E +F FC+ + +E +K FN+ IL N
Sbjct: 438 LINQSIPFQA--SNFYIGVLDIAGFEYFTVNSFEQFCINYCNEKLQKFFNDNILKN 491
>sp|P35881|TRA5_LACLA Transposase for insertion sequence element IS905 OS=Lactococcus
lactis subsp. lactis (strain IL1403) GN=tra905 PE=3 SV=1
Length = 391
Score = 35.4 bits (80), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 50/230 (21%), Positives = 96/230 (41%), Gaps = 39/230 (16%)
Query: 365 LNACRPLLGLDRTFLKSKYLGTLL-----LATGFDGDGALFPLAFGVVDEENDDNWMWFL 419
L A +L LD T+L + GT+ +A G +G L + + EN+ +W L
Sbjct: 153 LEANYSVLFLDGTYLPLR-RGTVSKECIHIALGITPEGQKAVLGYEIAPNENNASWSTLL 211
Query: 420 SELHNLLEINTENMPRLT-ILSDRQKGIVDGVEANFPTAFHGFCMRHLSESFR------- 471
+L N + + +++ +++D KG+ + +P A C+ H+S +
Sbjct: 212 DKLQN------QGIQQVSLVVTDGFKGLEQIISQAYPLAKQQRCLIHISRNLASKVKRAD 265
Query: 472 -----KEFNNTILVNLLWEAAHALT--VIEFEAKILEIEEI--SQDAAYWIRRIPPRLWA 522
++F L A AL + E++ K ++ E + D + P ++W
Sbjct: 266 RAVILEQFKTIYRAENLEMAVQALENFIAEWKPKYRKVMESLENTDNLLTFYQFPYQIWH 325
Query: 523 TAYFEGTRFGHLTANIVESLNSWILEASGLPII-QMMECIRRQLMTWFNE 571
+ Y + N++ESLN I + ++ E + R L+T F +
Sbjct: 326 SIY---------STNLIESLNKEIKRQTKKKVLFPNEEALERYLVTLFED 366
>sp|A5WDP0|THIE_PSYWF Thiamine-phosphate synthase OS=Psychrobacter sp. (strain PRwf-1)
GN=thiE PE=3 SV=1
Length = 213
Score = 35.0 bits (79), Expect = 2.0, Method: Composition-based stats.
Identities = 15/28 (53%), Positives = 20/28 (71%)
Query: 23 VLGHNHIMGLNQNHDLELGQTHEHHLDL 50
+LGH+ +GL+ N +L QTH HHLDL
Sbjct: 103 ILGHDAWLGLSINTLAQLQQTHHHHLDL 130
>sp|P24587|AKAP5_RAT A-kinase anchor protein 5 OS=Rattus norvegicus GN=Akap5 PE=2 SV=2
Length = 714
Score = 34.3 bits (77), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 41/186 (22%), Positives = 68/186 (36%), Gaps = 19/186 (10%)
Query: 4 HDLILGQRHNLGMGQNQQLVLGHNHIMGLNQNHDLELGQTHEHHLDLGQQNHELGLGHPH 63
+ I+G MGQ ++ +GH + Q + +GQ E + Q E +G
Sbjct: 402 EEAIVGHTEKATMGQAEEATVGHIEKTTVGQAEEATVGQAEEATVG---QAEEATVGQA- 457
Query: 64 DHDLDLGQNHDQEGGDGHGYGHANELAME--RKPEHGDHEMPLPAQNHELALSENNE--L 119
+ +GQ + G A E + K G E + Q E + + E +
Sbjct: 458 -EEATVGQAEE------ATVGQAGEATVSHIEKTTVGQAEEAIVGQAEEATVGQAEEATV 510
Query: 120 GVSENQELDENLDLAVDQHQELAIEPVQDMDVHHSQLVVSGSP----VLQVRTITPNSAF 175
G +E + + + VDQ +E + ++ V + G V Q T A
Sbjct: 511 GQAEEATVGQAEEATVDQAEEATVGQAEEATVGQAGEAAVGQAEEAIVAQAEEATVGQAG 570
Query: 176 ELAVGQ 181
E VGQ
Sbjct: 571 EATVGQ 576
>sp|O70157|TOP3A_MOUSE DNA topoisomerase 3-alpha OS=Mus musculus GN=Top3a PE=1 SV=1
Length = 1003
Score = 32.7 bits (73), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Query: 707 KSLRPPGRPRKKRVRAEDRGR-VKRVVHCSRCNQTGHFRTTC 747
K+ RP ++ R + D G VK+ CS C+Q GH RT C
Sbjct: 958 KAQRPEAASKRPRAGSSDAGSTVKKPRKCSLCHQPGHTRTFC 999
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.320 0.135 0.420
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 294,820,249
Number of Sequences: 539616
Number of extensions: 12929066
Number of successful extensions: 32469
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 81
Number of HSP's that attempted gapping in prelim test: 31607
Number of HSP's gapped (non-prelim): 490
length of query: 751
length of database: 191,569,459
effective HSP length: 125
effective length of query: 626
effective length of database: 124,117,459
effective search space: 77697529334
effective search space used: 77697529334
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 65 (29.6 bits)