BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 004472
(751 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9Z315|SNUT1_MOUSE U4/U6.U5 tri-snRNP-associated protein 1 OS=Mus musculus GN=Sart1
PE=2 SV=1
Length = 806
Score = 83.6 bits (205), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 73/235 (31%), Positives = 127/235 (54%), Gaps = 30/235 (12%)
Query: 243 RILKMKEERLKKNSEGAPEI---LSWVNRSRKIEQIKNVEKKKALQLSKIFEEQD----- 294
R+L K ++K E P + +W+ RSR++++ K++ +K+A K+ EE D
Sbjct: 178 RLLNQKLGKIKTLGEDDPWLDDTAAWIERSRQLQKEKDLAEKRA----KLLEEMDQEFGV 233
Query: 295 -NIVQGESEDEEAGQHSSHDLAGVKVLHGLDKVMEGGAVVLTLKDQQILADGDINEDVDM 353
+V+ E E +S+ DL G+ V H +D EG VVLTLKD+ +L DG+ D+
Sbjct: 234 STLVEEEFEQRRQDLYSARDLQGLTVEHAIDSFREGETVVLTLKDKGVLQDGE-----DV 288
Query: 354 LENIEIGEQKRRDEAYKAAKKKTGIY---DDKFNDDPSSEK--KILPQYDEPATDE---G 405
L N+ + +++R D+ + KKK +D+ DD + +K IL +YDE E
Sbjct: 289 LVNVNMVDKERADKNVELRKKKPDYLPYAEDESVDDLAQQKPRSILAKYDEELEGERPHS 348
Query: 406 LTLDARGRFTGEAEKKLEELRRRIQGVQANNSTGDLNLSAKITSDYFTQEEMLQF 460
L+ G G E++LEE+R +++ +QA + + ++ ++ S+Y + EEM+ F
Sbjct: 349 FRLEQGGMADGLRERELEEIRTKLR-LQAQSLS---SVGPRLASEYLSPEEMVTF 399
>sp|Q5XIW8|SNUT1_RAT U4/U6.U5 tri-snRNP-associated protein 1 OS=Rattus norvegicus
GN=Sart1 PE=2 SV=1
Length = 806
Score = 82.0 bits (201), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 73/236 (30%), Positives = 125/236 (52%), Gaps = 32/236 (13%)
Query: 243 RILKMKEERLKKNSEGAPEI---LSWVNRSRKIEQIKNVEKKKALQLSKIFEEQD----- 294
R+L K ++K E P + +W+ RSR++++ K++ +K+A K+ EE D
Sbjct: 178 RLLNQKLGKIKTLGEDDPWLDDTAAWIERSRQLQKEKDLAEKRA----KLLEEMDQEFGV 233
Query: 295 -NIVQGESEDEEAGQHSSHDLAGVKVLHGLDKVMEGGAVVLTLKDQQILADGDINEDVDM 353
+V+ E E +S+ DL G+ V H +D EG VVLTLKD+ +L +G+ D+
Sbjct: 234 STLVEEEFEQRRQDLYSARDLQGLTVEHAIDSFREGETVVLTLKDKGVLQEGE-----DV 288
Query: 354 LENIEIGEQKRRDEAYKAAKKKTGIY---DDKFNDDPSSEK--KILPQYDEPATDE---G 405
L N+ + +++R D+ + KKK +D+ DD + +K IL +YDE E
Sbjct: 289 LVNVNMVDKERADKNVELRKKKPDYLPYAEDESVDDLAQQKPRSILAKYDEELEGERPHS 348
Query: 406 LTLDARGRFTGEAEKKLEELRRRIQ-GVQANNSTGDLNLSAKITSDYFTQEEMLQF 460
L+ G G E++LEE+R +++ Q+ N+ G ++ S+Y + EEM+ F
Sbjct: 349 FRLEQGGMADGLRERELEEIRTKLRLQAQSLNTVG-----PRLASEYLSPEEMVTF 399
>sp|F1QBY1|NIPLB_DANRE Nipped-B-like protein B OS=Danio rerio GN=nipblb PE=2 SV=1
Length = 2876
Score = 80.9 bits (198), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 69/156 (44%), Positives = 109/156 (69%), Gaps = 6/156 (3%)
Query: 34 KERNKGKSRGDEKDRRSKDRRDSEKDR-KERRREDRDERDKERSK--EKPRDRDKDRK-E 89
K++ KG+ + EK R + +D K++ K R +E RDK+RSK EK R++D+D++ E
Sbjct: 716 KDQEKGRDKEVEKGRYKERVKDRVKEQEKVRDKEQVKGRDKKRSKDLEKCREKDQDKELE 775
Query: 90 KEPERDREIEKERGKDKSRDRETEKERGKDKSRDREKERDKTRDKERERGREKHKDREKE 149
K+ E++++ E E+G++K +D+E EK R KD+ ++ EK R+K +DKE E+GREK +D+E E
Sbjct: 776 KDREKNQDKELEKGREKDQDKELEKGREKDRDKEMEKAREKDQDKELEKGREKDQDKELE 835
Query: 150 RESEKDRERDKAREKSREKGREMELDKERSRERDRV 185
+ EKD RDK REK R+K R+ + DK R ++RD+V
Sbjct: 836 KGQEKD--RDKVREKDRDKVRDKDRDKVREKDRDKV 869
Score = 72.0 bits (175), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 68/174 (39%), Positives = 117/174 (67%), Gaps = 14/174 (8%)
Query: 25 DRNETEHRSKERNKGKSRGDEKDR---RSKDR-RDSEKDRKERRREDRD-------ERDK 73
D+ + + R K+R+K + EKD+ KDR ++ +K+ ++ R +D+D E+D+
Sbjct: 747 DKEQVKGRDKKRSKDLEKCREKDQDKELEKDREKNQDKELEKGREKDQDKELEKGREKDR 806
Query: 74 ERSKEKPRDRDKDRK-EKEPERDREIEKERGKDKSRDRETEKERGKDKSRDREKERDKTR 132
++ EK R++D+D++ EK E+D++ E E+G++K RD+ EK+R K + +DR+K R+K R
Sbjct: 807 DKEMEKAREKDQDKELEKGREKDQDKELEKGQEKDRDKVREKDRDKVRDKDRDKVREKDR 866
Query: 133 DKERERGREK--HKDREKERESEKDRERDKAREKSREKGREMELDKERSRERDR 184
DK RE+ R+K KDREK RE ++D+ R+K R+K + K RE + +KER ++RD+
Sbjct: 867 DKVREKDRDKLREKDREKIRERDRDKGREKDRDKEQVKTREKDQEKERLKDRDK 920
Score = 69.7 bits (169), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 72/210 (34%), Positives = 117/210 (55%), Gaps = 25/210 (11%)
Query: 5 GPDESPVREYSDEGAYDNNLDRNETEHRSKERNKGKS-------RGDEKDRRSKDRRDSE 57
G E+P+ ++ + N + + SK R+ GK+ +G E R+ + R +
Sbjct: 588 GRPETPINKHENRREISNKVSSEKRSDLSKHRHDGKAEKIRAEGKGHETSRKHEGRSELS 647
Query: 58 KDRKERRREDRDERDKERSKEKPRDRDKDRKEKEPERDREIEKER----GKDKSRDRETE 113
+D KE R E+D + SK + D K + E RD+E E+E+ G +K R++E E
Sbjct: 648 RDCKEERHR---EKDSDSSKGRRSDTSKSSR-VEHNRDKEQEQEKVGDKGLEKGREKELE 703
Query: 114 KERGKDKSRDREKERDKTRDKERERGR--EKHKDREKERESEKDRERDKAR--------E 163
K R K++ +D+EK+++K RDKE E+GR E+ KDR KE+E +D+E+ K R E
Sbjct: 704 KGRDKERVKDQEKDQEKGRDKEVEKGRYKERVKDRVKEQEKVRDKEQVKGRDKKRSKDLE 763
Query: 164 KSREKGREMELDKERSRERDRVSRKAHEED 193
K REK ++ EL+K+R + +D+ K E+D
Sbjct: 764 KCREKDQDKELEKDREKNQDKELEKGREKD 793
Score = 63.9 bits (154), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 60/148 (40%), Positives = 98/148 (66%), Gaps = 12/148 (8%)
Query: 32 RSKERNKGKSRGDEKDRRSKDRRDSEKDRKERRREDRDERDKERSKEKPRDRDKDRK-EK 90
R K ++K +G EKD+ + + EKDR ++ E E+D+++ EK R++D+D++ EK
Sbjct: 778 REKNQDKELEKGREKDQDKELEKGREKDR-DKEMEKAREKDQDKELEKGREKDQDKELEK 836
Query: 91 EPERDREIEKERGKDKSRDRETEKERGKDKSRDREKERDKTRDKERE--------RGREK 142
E+DR+ +E+ +DK RD++ +K R KD+ + REK+RDK R+K+RE +GREK
Sbjct: 837 GQEKDRDKVREKDRDKVRDKDRDKVREKDRDKVREKDRDKLREKDREKIRERDRDKGREK 896
Query: 143 HKDRE--KERESEKDRERDKAREKSREK 168
+D+E K RE ++++ER K R+K REK
Sbjct: 897 DRDKEQVKTREKDQEKERLKDRDKEREK 924
Score = 32.7 bits (73), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 45/112 (40%), Positives = 72/112 (64%), Gaps = 10/112 (8%)
Query: 32 RSKERNKGKSRGDEKDR---RSKDR-RDSEKDRKERRREDRDE-RDKERSKEKPRDRDKD 86
R K R+K + + EKDR R KDR + EKDR++ R DRD+ R+K+R KE+ + R+KD
Sbjct: 850 RDKVRDKDRDKVREKDRDKVREKDRDKLREKDREKIRERDRDKGREKDRDKEQVKTREKD 909
Query: 87 RKEKEPERDREIEKERGKDKSRDRETEKERGKDKSRDREKERDKTRDKERER 138
+E ER ++ +KER +K RD+ +++R ++K R++E DK ++R R
Sbjct: 910 ---QEKERLKDRDKER--EKVRDKGRDRDRDQEKKRNKELTEDKQAPEQRSR 956
>sp|O43290|SNUT1_HUMAN U4/U6.U5 tri-snRNP-associated protein 1 OS=Homo sapiens GN=SART1
PE=1 SV=1
Length = 800
Score = 75.5 bits (184), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 71/235 (30%), Positives = 125/235 (53%), Gaps = 30/235 (12%)
Query: 243 RILKMKEERLKKNSEGAPEI---LSWVNRSRKIEQIKNVEKKKALQLSKIFEEQDN-IVQ 298
R+L K ++K E P + +W+ RSR++++ K++ +K+A K+ EE D
Sbjct: 178 RLLNQKLGKIKTLGEDDPWLDDTAAWIERSRQLQKEKDLAEKRA----KLLEEMDQEFGV 233
Query: 299 GESEDEEAGQ-----HSSHDLAGVKVLHGLDKVMEGGAVVLTLKDQQILADGDINEDVDM 353
+EE GQ +S+ DL G+ V H +D EG ++LTLKD+ +L E+ D+
Sbjct: 234 STLVEEEFGQRRQDLYSARDLQGLTVEHAIDSFREGETMILTLKDKGVL-----QEEEDV 288
Query: 354 LENIEIGEQKRRDEAYKAAKKKTGIY---DDKFNDDPSSEK--KILPQYDEPATDE---G 405
L N+ + +++R ++ + KKK +D+ DD + +K IL +YDE E
Sbjct: 289 LVNVNLVDKERAEKNVELRKKKPDYLPYAEDESVDDLAQQKPRSILSKYDEELEGERPHS 348
Query: 406 LTLDARGRFTGEAEKKLEELRRRIQGVQANNSTGDLNLSAKITSDYFTQEEMLQF 460
L+ G G E++LEE+R +++ +QA + + + ++ S+Y T EEM+ F
Sbjct: 349 FRLEQGGTADGLRERELEEIRAKLR-LQAQSLS---TVGPRLASEYLTPEEMVTF 399
>sp|Q6PGZ3|MIPT3_DANRE TRAF3-interacting protein 1 OS=Danio rerio GN=traf3ip1 PE=2 SV=1
Length = 629
Score = 49.3 bits (116), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 32/60 (53%), Positives = 48/60 (80%), Gaps = 6/60 (10%)
Query: 93 ERDREIEKERGKDKSRDRETEKERGKDKSRDREKERDKTRDKERERGREKHKDREKERES 152
ER+R +++R KDKSRDRE KDK+R++E+ER+K R++E+ER R+K +D++KERES
Sbjct: 205 ERERTKDRDRDKDKSRDRE------KDKTREKEREREKDRNREKERERDKDRDKKKERES 258
Score = 39.7 bits (91), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 31/63 (49%), Positives = 47/63 (74%), Gaps = 3/63 (4%)
Query: 67 DRDERDKERSKEKPRDRDKDRKEKEPERDREIEKERGKDKSRDRETEKERGKDKSRDREK 126
+R ++ +ER + K RDRDKD K ++ E+D+ EKER ++K R+RE E+ER DK RD++K
Sbjct: 198 ERSDKGRERERTKDRDRDKD-KSRDREKDKTREKEREREKDRNREKERER--DKDRDKKK 254
Query: 127 ERD 129
ER+
Sbjct: 255 ERE 257
Score = 37.7 bits (86), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 22/47 (46%), Positives = 36/47 (76%)
Query: 138 RGREKHKDREKERESEKDRERDKAREKSREKGREMELDKERSRERDR 184
R RE+ KDR+++++ +DRE+DK REK RE+ ++ +KER R++DR
Sbjct: 204 RERERTKDRDRDKDKSRDREKDKTREKEREREKDRNREKERERDKDR 250
>sp|P41512|TOP1_XENLA DNA topoisomerase 1 OS=Xenopus laevis GN=top1 PE=2 SV=1
Length = 829
Score = 47.4 bits (111), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 50/136 (36%), Positives = 77/136 (56%), Gaps = 5/136 (3%)
Query: 21 DNNLDRNETEHRSKERNKGKSRGDEKDRRSKDRRDSEKDRKERRREDRDERDKERSKEKP 80
D++ + + EHR KE K K R K S+ R SEK K++ + + R+K+ K +
Sbjct: 20 DSHKHKKDKEHRHKEHKKDKDREKSKHNNSEHRDPSEKKHKDKHKNNDKHREKDGEKHRE 79
Query: 81 RDRDKDRKEKEPERDREIEKERGKDKSRDRETEKERGKDKSRDREKERDKTRDKERERGR 140
RD +K R +K E+ R+ EK + KD + +E EK R KD EK ++K +K +E+
Sbjct: 80 RDGEKHR-DKNGEKHRDGEKHKEKDIEKHKEVEKHRVKDG----EKHKEKDVEKHKEKDV 134
Query: 141 EKHKDREKERESEKDR 156
EKH+D EK + +KDR
Sbjct: 135 EKHRDGEKHKHRDKDR 150
Score = 42.7 bits (99), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 48/135 (35%), Positives = 71/135 (52%), Gaps = 22/135 (16%)
Query: 49 RSKDRRDSEKDRKERRREDRDERDKERSKEK---PRD----------------RDKDRKE 89
R D +KD++ R +E + ++D+E+SK RD R+KD E
Sbjct: 17 RVNDSHKHKKDKEHRHKEHKKDKDREKSKHNNSEHRDPSEKKHKDKHKNNDKHREKD-GE 75
Query: 90 KEPERDREIEKERGKDKSRDRETEKERGKDKSRDREKERDKTRDKERERGREKH--KDRE 147
K ERD E +++ +K RD E KE+ +K ++ EK R K +K +E+ EKH KD E
Sbjct: 76 KHRERDGEKHRDKNGEKHRDGEKHKEKDIEKHKEVEKHRVKDGEKHKEKDVEKHKEKDVE 135
Query: 148 KERESEKDRERDKAR 162
K R+ EK + RDK R
Sbjct: 136 KHRDGEKHKHRDKDR 150
>sp|Q8SX83|SPEN_DROME Protein split ends OS=Drosophila melanogaster GN=spen PE=1 SV=2
Length = 5560
Score = 45.4 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 73/248 (29%), Positives = 119/248 (47%), Gaps = 19/248 (7%)
Query: 16 DEGAYDNNLDRNETEHRSKERNKGKSRGDEKDRRSKDRRDSEKDRKERRREDRDERDKER 75
D D+ D+ E R ++ K + EKD R + R+ EKDRK ++ E E K +
Sbjct: 1906 DSSEADDTADKAEKNQRHEKEKKERQEKREKDLRKQVERE-EKDRKAQQEEREKEDRKAK 1964
Query: 76 SKEKPRDRDKDRKEKEPERDREIEKERGKDKSRDRETEKE-RGKDKSRDREKERDKTRDK 134
+EK R+R+K +E +++RE + R K++ + EKE R KD ++ERD +
Sbjct: 1965 EEEKEREREKKAQEDREKKEREERELREKEQRDKEQKEKEIREKDLREKEQRERDNREKE 2024
Query: 135 ERERGREKHKDREKE-RESEKDRERDKAREKSREKG---REMELDKE--RSRERDRVSRK 188
R++ + + REKE RE E RE+D+ + REK R M++++E R R+ S +
Sbjct: 2025 LRDKDLREKEMREKEQREKELHREKDQREREHREKEQSRRAMDVEQEGRGGRMRELSSYQ 2084
Query: 189 AHEEDCARSNDNMPKLDNEGNMNRDINKHGKVSYDDIDDQDNEDAHVSTSGLGDRILKMK 248
+ D A ++ +D + H K + D Q A ST D K +
Sbjct: 2085 KSKMDIAGEASSLTAIDCQ---------HNKENAMDTIAQGTPGASPSTP--SDNTPKER 2133
Query: 249 EERLKKNS 256
+L +NS
Sbjct: 2134 SRKLSRNS 2141
>sp|Q8C761|WDR60_MOUSE WD repeat-containing protein 60 OS=Mus musculus GN=Wdr60 PE=2 SV=1
Length = 999
Score = 42.7 bits (99), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 38/94 (40%), Positives = 56/94 (59%), Gaps = 13/94 (13%)
Query: 59 DRKERRREDRDERDKERSKEKPRDRDKDRKEKEPERDREIEKERGKDKSRDRETEKERGK 118
DR+ R +E ERD S E PR ERDRE KER KD ++DR EK++ K
Sbjct: 60 DREARHKEKTAERDLYTSTEHPRG----------ERDRERHKERRKD-AKDR--EKDKLK 106
Query: 119 DKSRDREKERDKTRDKERERGREKHKDREKERES 152
++ RD+E E+ +R K+RER +++ +E+ R+S
Sbjct: 107 ERHRDQEAEKAHSRGKDREREKDRRARKEEIRQS 140
Score = 38.5 bits (88), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 35/75 (46%), Positives = 46/75 (61%), Gaps = 4/75 (5%)
Query: 82 DRDKDRKEKEPERDREIEKERGKDKSRDRETEKERGKDKSRDREKERDKTRDKERERGRE 141
DR+ KEK ERD E + + RDRE KER KD ++DREK++ K R +++E E
Sbjct: 60 DREARHKEKTAERDLYTSTEHPRGE-RDRERHKERRKD-AKDREKDKLKERHRDQE--AE 115
Query: 142 KHKDREKERESEKDR 156
K R K+RE EKDR
Sbjct: 116 KAHSRGKDREREKDR 130
Score = 34.7 bits (78), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 37/88 (42%), Positives = 51/88 (57%), Gaps = 13/88 (14%)
Query: 106 KSRDRETEKERGKDKSRDREKERDKTRDKERERG---REKHKDREKERESEKDRERDKAR 162
KSRD + E R K+K+ ERD E RG RE+HK+R K+ KDRE+DK +
Sbjct: 55 KSRDPDREA-RHKEKT----AERDLYTSTEHPRGERDRERHKERRKD---AKDREKDKLK 106
Query: 163 EKSREKGREMELD--KERSRERDRVSRK 188
E+ R++ E K+R RE+DR +RK
Sbjct: 107 ERHRDQEAEKAHSRGKDREREKDRRARK 134
>sp|A8T6P4|MYRIP_DANRE Rab effector MyRIP OS=Danio rerio GN=myrip PE=1 SV=1
Length = 838
Score = 38.9 bits (89), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 49/137 (35%), Positives = 82/137 (59%), Gaps = 7/137 (5%)
Query: 37 NKGKSRGDEKDR---RSKDRRDSEKDRKERRREDRDERDKER---SKEKPRDRDKDRK-E 89
NK + R EKD R K+RR+S+++ K R E + ER + + + R + +R+ +
Sbjct: 697 NKQEDRVSEKDSGKLRPKERRESKRESKLREMEKQSERQTVKLMDTSDAVRQINIERQMK 756
Query: 90 KEPERDREIEKERGKDKSRDRETEKERGKDKSRDREKERDKTRDKERERGREKHKDREKE 149
KE ER R+IE++ +++ R RE EK+ KD+ R RE E + +ER++ EK +E+E
Sbjct: 757 KERERQRDIERQVERERERQRELEKQIEKDRERRREIEMQVEKKQERQKEMEKQLKQEQE 816
Query: 150 RESEKDRERDKAREKSR 166
R+SE +R+ +K R+ R
Sbjct: 817 RQSEIERDLEKKRKSIR 833
>sp|Q5XIN3|MIPT3_RAT TRAF3-interacting protein 1 OS=Rattus norvegicus GN=Traf3ip1 PE=2
SV=1
Length = 653
Score = 38.5 bits (88), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 57/180 (31%), Positives = 93/180 (51%), Gaps = 40/180 (22%)
Query: 42 RGDEKDRRSKDRRDSEKDRKERRRED-RDERDKERSKE-KPRDRDKDRKEKE--PERDRE 97
+GD + R + + E D K + E+ R +++++RS E K R + K+KE E +
Sbjct: 133 KGDSRGRVLRTSKAQEPDNKSVKEEESRTQKEEKRSSEVKERSSSAEHKQKEELKEDSKP 192
Query: 98 IEKERGKDKSRDRETEKERGKDKSRDREKERDKTRDKERERGREKHK-DRE--------- 147
EKER K+K+++ D+ R RE +RD+ RD ERE+ R + K DR+
Sbjct: 193 REKERDKEKAKE--------ADRDRHREPDRDRNRDGEREKARARAKQDRDRNNKDRDRE 244
Query: 148 --------------KERESEKDRERDKAREKSREKGREME----LDKERSRERDRVSRKA 189
KE+E +KDR+RDK +++ R K + E D+E+SR+ D+ +KA
Sbjct: 245 TERDRDRDRRSDGGKEKERQKDRDRDKGKDRERRKSKNGEHTRDPDREKSRDADKSEKKA 304
Score = 35.4 bits (80), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 49/154 (31%), Positives = 77/154 (50%), Gaps = 40/154 (25%)
Query: 56 SEKDRKERRREDRDERDKERSKEKPRDRDKDRKEKEPERDR----EIEKERGKDKS-RDR 110
+E +KE +ED R+KER KEK ++ D+DR +EP+RDR E EK R + K RDR
Sbjct: 178 AEHKQKEELKEDSKPREKERDKEKAKEADRDR-HREPDRDRNRDGEREKARARAKQDRDR 236
Query: 111 ETEKER---------------GKDKSRDREKERDKTRDKERERGRE----KHKDREKERE 151
+ GK+K R ++++RDK +D+ER + + + DREK R+
Sbjct: 237 NNKDRDRETERDRDRDRRSDGGKEKERQKDRDRDKGKDRERRKSKNGEHTRDPDREKSRD 296
Query: 152 SEKDRER---------------DKAREKSREKGR 170
++K ++ K R K+ +GR
Sbjct: 297 ADKSEKKADISVGASKSSTLKASKRRSKNSLEGR 330
>sp|O23212|U2A2A_ARATH Splicing factor U2af large subunit A OS=Arabidopsis thaliana
GN=U2AF65A PE=2 SV=2
Length = 573
Score = 37.7 bits (86), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 35/100 (35%), Positives = 53/100 (53%), Gaps = 19/100 (19%)
Query: 46 KDRRSKDRRDSEKDRKERRREDRDERDKERSKEKPRDRDKDRKEKEPERDREIEKERGKD 105
+D +D+ DS+ R+ R E R K+R +EK RD+D+ ERD E+ +
Sbjct: 25 RDGEIEDQLDSKPKRESRDHERETSRSKDREREKGRDKDR-------ERDSEVSR----- 72
Query: 106 KSRDRETEKERGKDKSRDREKERDKTRDKERERGREKHKD 145
+SRDR+ EK K R R+K+RD +ER +H+D
Sbjct: 73 RSRDRDGEKS----KERSRDKDRDH---RERHHRSSRHRD 105
Score = 37.4 bits (85), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 30/70 (42%), Positives = 45/70 (64%), Gaps = 6/70 (8%)
Query: 94 RDREIEKE---RGKDKSRDRETEKERGKDKSRDREKERDKTRDKERERGREKHKDREKER 150
RD EIE + + K +SRD E E R KD R+REK RDK R+++ E R + +DR+ E+
Sbjct: 25 RDGEIEDQLDSKPKRESRDHERETSRSKD--REREKGRDKDRERDSEVSR-RSRDRDGEK 81
Query: 151 ESEKDRERDK 160
E+ R++D+
Sbjct: 82 SKERSRDKDR 91
Score = 33.5 bits (75), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 31/91 (34%), Positives = 51/91 (56%), Gaps = 18/91 (19%)
Query: 105 DKSRDRETEKE---RGKDKSRDREKERDKTRDKERERGREKHKDREKERESEKDRERDKA 161
+ RD E E + + K +SRD E+E +++D+ERE+G +D++R++
Sbjct: 22 NGGRDGEIEDQLDSKPKRESRDHERETSRSKDREREKG--------------RDKDRERD 67
Query: 162 REKS-REKGREMELDKERSRERDRVSRKAHE 191
E S R + R+ E KERSR++DR R+ H
Sbjct: 68 SEVSRRSRDRDGEKSKERSRDKDRDHRERHH 98
Score = 33.5 bits (75), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 30/98 (30%), Positives = 54/98 (55%), Gaps = 17/98 (17%)
Query: 54 RDSEKDRKERRREDRDERDKERSKEKPRDRDKDRKEKEPERDREIEKERGKDKSRDRETE 113
RD E + + + R+ RD ER + +DR++ E+G+DK R+R++E
Sbjct: 25 RDGEIEDQLDSKPKRESRDHERETSRSKDRER---------------EKGRDKDRERDSE 69
Query: 114 KERGKDKSRDREKERDKTRDKERERGREKHKDREKERE 151
R + + RD EK ++++RDK+R+ RE+H + R+
Sbjct: 70 VSR-RSRDRDGEKSKERSRDKDRDH-RERHHRSSRHRD 105
>sp|Q8TDR0|MIPT3_HUMAN TRAF3-interacting protein 1 OS=Homo sapiens GN=TRAF3IP1 PE=1 SV=1
Length = 691
Score = 37.0 bits (84), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 55/175 (31%), Positives = 95/175 (54%), Gaps = 28/175 (16%)
Query: 42 RGDEKDRRSKDRRDSEKDRKERRRED----RDERDKERSKEKPRDRDKDRKEKE------ 91
+G+ K R S R E D K R E+ ++ D+ ++ K R +DRK+KE
Sbjct: 133 KGEVKGRASLTSRSQELDNKNVREEESRVHKNTEDRGDAEIKERSTSRDRKQKEELKEDR 192
Query: 92 -P---------------ERDREIEKERGKDKSR-DRETEKERGKDKSRDREKERDKTRDK 134
P R RE E+ER K ++R D E +K+RG ++ RDR+ ER K ++
Sbjct: 193 KPREKDKDKEKAKENGGNRHREGERERAKARARPDNERQKDRG-NRERDRDSERKKETER 251
Query: 135 ERERGREKHKDREKERESEKDRERDKAREKSREKGREMELDKERSRERDRVSRKA 189
+ E G+EK + R+++RE ++D+ +D+ R + + +LD+E++RE D+ +K+
Sbjct: 252 KSEGGKEKERLRDRDRERDRDKGKDRDRRRVKNGEHSWDLDREKNREHDKPEKKS 306
>sp|Q9VJ87|CWC22_DROME Pre-mRNA-splicing factor CWC22 homolog OS=Drosophila melanogaster
GN=ncm PE=1 SV=3
Length = 1330
Score = 36.6 bits (83), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 52/164 (31%), Positives = 81/164 (49%), Gaps = 19/164 (11%)
Query: 34 KERNKGKSRGDEKDRRSKDRRDSEKDR-----KERRR-----EDRD-ERDKERSKEKPRD 82
+ERN+G S D + +R D E++R KER+ DR +RD+ RS E+P
Sbjct: 1152 RERNRGNSSYDRERKRGNSSYDRERNRESSYDKERKNRNAVAHDRQRKRDRSRSYERPTI 1211
Query: 83 RDKDRKEKEPERDREIEKERGKDKSR--DRETEKERGKDKSRDREKERDKTRDKERERGR 140
R E R++ +E R + SR DR + ER R ER R + +RG
Sbjct: 1212 R-----ENSAPREKRMESSRSEKDSRRGDRSSRNERSDRGERSDRGERSD-RGERSDRGE 1265
Query: 141 EKHKDREKERESEKDRERDKAREKSREKGREMELDKERSRERDR 184
+ +R DRE++++R K RE+ R+ +L +R R+R+R
Sbjct: 1266 RSDRGERSDRGERSDREKERSRAKERERDRDRDLKGQRERKRER 1309
>sp|B3KS81|SRRM5_HUMAN Serine/arginine repetitive matrix protein 5 OS=Homo sapiens
GN=SRRM5 PE=1 SV=3
Length = 715
Score = 34.7 bits (78), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 49/93 (52%), Gaps = 2/93 (2%)
Query: 91 EPERDREIEKERGKDKSRDRETEKERGKDKSRDREKERDKTRDKERERGREKHKDREKER 150
P + R+ + R +K+RDR + R K+RDR + R + ++ R R +K R++ R
Sbjct: 394 SPNKQRDHSRSRSPNKARDR--SRSRSPYKARDRSRSRSPNKARDCSRSRSPYKARDRSR 451
Query: 151 ESEKDRERDKAREKSREKGREMELDKERSRERD 183
++ RD +R +S K R+ + S+ERD
Sbjct: 452 SRSPNKARDHSRSRSPNKARDRSRSRSPSKERD 484
>sp|Q8WVS4|WDR60_HUMAN WD repeat-containing protein 60 OS=Homo sapiens GN=WDR60 PE=1 SV=3
Length = 1066
Score = 33.9 bits (76), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 36/116 (31%), Positives = 57/116 (49%), Gaps = 19/116 (16%)
Query: 65 REDRDERDKERSKEK---------PRDRDKDRKEKEPERDREIEKERGKDKSRDRETEKE 115
+E+R R+K+ KE PR RD D+ + RDR E K E
Sbjct: 31 KEERKHREKKLRKESEMDLPEHKEPRCRDPDQDAR--SRDRVAEVHTAK--------ESP 80
Query: 116 RGKDKSRDREKERDKTRDKERERGREKHKDREKERESEKDRERDKAREKSREKGRE 171
RG+ + + R +D+E+E+ +EKH++ EK KDRE++K R +E+ R+
Sbjct: 81 RGERDRDRQRERRRDAKDREKEKLKEKHREAEKSHSRGKDREKEKDRRARKEELRQ 136
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.306 0.127 0.339
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 292,041,846
Number of Sequences: 539616
Number of extensions: 14509387
Number of successful extensions: 256603
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 3054
Number of HSP's successfully gapped in prelim test: 3767
Number of HSP's that attempted gapping in prelim test: 75458
Number of HSP's gapped (non-prelim): 66172
length of query: 751
length of database: 191,569,459
effective HSP length: 125
effective length of query: 626
effective length of database: 124,117,459
effective search space: 77697529334
effective search space used: 77697529334
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (21.9 bits)
S2: 65 (29.6 bits)