Query 004472
Match_columns 751
No_of_seqs 222 out of 264
Neff 4.6
Searched_HMMs 13730
Date Tue Mar 26 02:13:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004472.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/004472hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2oeba1 a.70.2.1 (A:2-153) Hyp 29.4 9.2 0.00067 34.5 1.6 18 687-704 45-62 (152)
2 d2id3a1 a.4.1.9 (A:13-80) Puta 11.0 65 0.0047 23.9 2.5 46 692-737 12-57 (68)
3 d2d6ya1 a.4.1.9 (A:7-74) Putat 9.0 59 0.0043 24.3 1.5 44 692-735 8-51 (68)
4 d2hkua1 a.4.1.9 (A:18-87) Puta 8.5 91 0.0067 23.3 2.5 48 692-740 7-54 (70)
5 d2dw4a2 c.3.1.2 (A:274-654,A:7 8.1 88 0.0064 27.1 2.6 30 687-717 10-46 (449)
6 d1jt6a1 a.4.1.9 (A:2-72) Multi 7.6 85 0.0062 23.3 1.9 42 692-733 7-48 (71)
7 d2fq4a1 a.4.1.9 (A:9-77) Trans 7.3 56 0.0041 24.5 0.7 46 692-737 10-55 (69)
8 d2o7ta1 a.4.1.9 (A:1-78) Trans 7.0 69 0.005 24.4 1.1 43 692-734 13-55 (78)
9 d1t56a1 a.4.1.9 (A:22-94) Ethr 6.6 76 0.0055 23.5 1.1 38 692-729 9-46 (73)
10 d2gfna1 a.4.1.9 (A:4-80) Proba 6.2 82 0.0059 23.7 1.2 43 692-734 12-54 (77)
No 1
>d2oeba1 a.70.2.1 (A:2-153) Hypothetical protein AF1862 {Archaeoglobus fulgidus [TaxId: 2234]}
Probab=29.41 E-value=9.2 Score=34.46 Aligned_cols=18 Identities=17% Similarity=0.373 Sum_probs=16.3
Q ss_pred hhcccHHHHHHHHHhcCC
Q 004472 687 AVGKGLAGALSLLKDRGT 704 (751)
Q Consensus 687 ~Vg~GLAAAL~LLk~KGl 704 (751)
++..|||.||++|.+||-
T Consensus 45 I~~NGL~qtlAFl~sK~~ 62 (152)
T d2oeba1 45 ILNNGLGATLAFFLSKLE 62 (152)
T ss_dssp HHHHCHHHHHHHHHHTSC
T ss_pred HHHccHHHHHHHHHHhcc
Confidence 568999999999999984
No 2
>d2id3a1 a.4.1.9 (A:13-80) Putative transcriptional regulator SCO5951 {Streptomyces coelicolor [TaxId: 1902]}
Probab=10.95 E-value=65 Score=23.90 Aligned_cols=46 Identities=20% Similarity=0.028 Sum_probs=36.5
Q ss_pred HHHHHHHHHhcCCcccccccCCCCcchhhhHHHHHHhhhhHHHHHH
Q 004472 692 LAGALSLLKDRGTLKEGIDWGGRNMDKKRASLLALLMTLQMLIIDL 737 (751)
Q Consensus 692 LAAAL~LLk~KGlLke~vq~~gR~~dkkks~~~~vy~~~~~~~~d~ 737 (751)
|.+|+.|+.+.|+-..++...+....-.+..+-..|...+-++...
T Consensus 12 l~aa~~l~~~~G~~~~t~~~Ia~~agvs~~~iY~~F~~k~~L~~~~ 57 (68)
T d2id3a1 12 LLAAGDALAADGFDALDLGEIARRAGVGKTTVYRRWGTPGGLAADL 57 (68)
T ss_dssp HHHHHHHHHHHCGGGCCHHHHHHHHTCCHHHHHHHHCSHHHHHHHH
T ss_pred HHHHHHHHHHhCcccCCHHHHHHHHCcCHHHHHHHCcCHHHHHHHH
Confidence 5689999999999999988877776666777666777777666655
No 3
>d2d6ya1 a.4.1.9 (A:7-74) Putative regulator SCO4008 {Streptomyces coelicolor [TaxId: 1902]}
Probab=9.01 E-value=59 Score=24.26 Aligned_cols=44 Identities=14% Similarity=0.109 Sum_probs=34.3
Q ss_pred HHHHHHHHHhcCCcccccccCCCCcchhhhHHHHHHhhhhHHHH
Q 004472 692 LAGALSLLKDRGTLKEGIDWGGRNMDKKRASLLALLMTLQMLII 735 (751)
Q Consensus 692 LAAAL~LLk~KGlLke~vq~~gR~~dkkks~~~~vy~~~~~~~~ 735 (751)
|.+|+.|+.++||-..+|...++...-.++.+-..|.....++.
T Consensus 8 l~aa~~l~~~~G~~~~ti~~Ia~~agvs~~~~Y~~F~~K~~l~~ 51 (68)
T d2d6ya1 8 FEAAVAEFARHGIAGARIDRIAAEARANKQLIYAYYGNKGELFA 51 (68)
T ss_dssp HHHHHHHHHHHTTTSCCHHHHHHHHTCCHHHHHHHHSSHHHHHH
T ss_pred HHHHHHHHHHhCccccCHHHHHHHHCcchhHHHHHCcCHHHHHH
Confidence 68999999999999999999887777777776666666554443
No 4
>d2hkua1 a.4.1.9 (A:18-87) Putative transcriptional regulator RHA1_ro03468 {Rhodococcus sp. RHA1 [TaxId: 101510]}
Probab=8.49 E-value=91 Score=23.28 Aligned_cols=48 Identities=10% Similarity=0.063 Sum_probs=35.6
Q ss_pred HHHHHHHHHhcCCcccccccCCCCcchhhhHHHHHHhhhhHHHHHHHHH
Q 004472 692 LAGALSLLKDRGTLKEGIDWGGRNMDKKRASLLALLMTLQMLIIDLRIF 740 (751)
Q Consensus 692 LAAAL~LLk~KGlLke~vq~~gR~~dkkks~~~~vy~~~~~~~~d~~~~ 740 (751)
|-+|+.|+..+|+ ..++..+++.-.-.+..+-..|...+-++...=..
T Consensus 7 l~aA~~l~~~~G~-~~t~~~Ia~~agvs~~~~Y~~F~~K~~L~~~~~~~ 54 (70)
T d2hkua1 7 FTAATELFLEHGE-GVPITQICAAAGAHPNQVTYYYGSKERLFVEVACA 54 (70)
T ss_dssp HHHHHHHHHHHCT-TSCHHHHHHHHTCCHHHHHHHHSSHHHHHHHHHHH
T ss_pred HHHHHHHHHhccc-CchHHHHHHHHCCChhhHHhcCCCHHHHHHHHHHH
Confidence 5688999999998 78888887777767777666777766665554333
No 5
>d2dw4a2 c.3.1.2 (A:274-654,A:764-831) Lysine-specific histone demethylase 1, LSD1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=8.13 E-value=88 Score=27.15 Aligned_cols=30 Identities=37% Similarity=0.492 Sum_probs=19.6
Q ss_pred hhccc---HHHHHHHHHhcCC----cccccccCCCCcc
Q 004472 687 AVGKG---LAGALSLLKDRGT----LKEGIDWGGRNMD 717 (751)
Q Consensus 687 ~Vg~G---LAAAL~LLk~KGl----Lke~vq~~gR~~d 717 (751)
+||.| |.||+.| .+.|+ |+..-.-|||+..
T Consensus 10 VIGaG~aGL~aA~~L-~~~G~~V~VlEa~~r~GGr~~t 46 (449)
T d2dw4a2 10 IIGSGVSGLAAARQL-QSFGMDVTLLEARDRVGGRVAT 46 (449)
T ss_dssp EECCBHHHHHHHHHH-HHTTCEEEEECSSSSSBTTCCE
T ss_pred EECCCHHHHHHHHHH-HhCCCCEEEEeCCCCCcccEEE
Confidence 46755 5556665 56796 6766677887654
No 6
>d1jt6a1 a.4.1.9 (A:2-72) Multidrug binding protein QacR {Staphylococcus aureus [TaxId: 1280]}
Probab=7.60 E-value=85 Score=23.27 Aligned_cols=42 Identities=17% Similarity=0.031 Sum_probs=31.2
Q ss_pred HHHHHHHHHhcCCcccccccCCCCcchhhhHHHHHHhhhhHH
Q 004472 692 LAGALSLLKDRGTLKEGIDWGGRNMDKKRASLLALLMTLQML 733 (751)
Q Consensus 692 LAAAL~LLk~KGlLke~vq~~gR~~dkkks~~~~vy~~~~~~ 733 (751)
|.+|+.|+.++|+-..++...++...-.++.+--.|...+-+
T Consensus 7 l~aa~~l~~~~G~~~~s~~~Ia~~agvs~~~~y~~F~~K~~L 48 (71)
T d1jt6a1 7 LGVAKELFIKNGYNATTTGEIVKLSESSKGNLYYHFKTKENL 48 (71)
T ss_dssp HHHHHHHHHHHCTTTCCHHHHHHHTTCCHHHHHHHHSSHHHH
T ss_pred HHHHHHHHHHhCccccCHHHHHHHHCcCHhHHHHHCcCHHHH
Confidence 578999999999999998887776666666655555554333
No 7
>d2fq4a1 a.4.1.9 (A:9-77) Transcriptional regulator BC3163 {Bacillus cereus [TaxId: 1396]}
Probab=7.28 E-value=56 Score=24.47 Aligned_cols=46 Identities=15% Similarity=0.174 Sum_probs=32.8
Q ss_pred HHHHHHHHHhcCCcccccccCCCCcchhhhHHHHHHhhhhHHHHHH
Q 004472 692 LAGALSLLKDRGTLKEGIDWGGRNMDKKRASLLALLMTLQMLIIDL 737 (751)
Q Consensus 692 LAAAL~LLk~KGlLke~vq~~gR~~dkkks~~~~vy~~~~~~~~d~ 737 (751)
|.+|+.|+.++|+-..++..++....-.++.+--.|....-++.+.
T Consensus 10 l~aa~~l~~~~G~~~~t~~~Ia~~agvs~~~~y~~F~~k~~L~~~~ 55 (69)
T d2fq4a1 10 LSASYELLLESGFKAVTVDKIAERAKVSKATIYKWWPNKAAVVMDG 55 (69)
T ss_dssp HHHHHHHHHHHCTTTCCHHHHHHHHTCCHHHHHHHCSSHHHHHHHH
T ss_pred HHHHHHHHHHhCcccCCHHHHHHHHCcCHHHHHHHCCCHHHHHHHH
Confidence 6799999999999999988877666655555444445555554443
No 8
>d2o7ta1 a.4.1.9 (A:1-78) Transcriptional regulator Cgl1640/Cg1846 {Corynebacterium glutamicum [TaxId: 1718]}
Probab=7.02 E-value=69 Score=24.39 Aligned_cols=43 Identities=9% Similarity=-0.059 Sum_probs=30.9
Q ss_pred HHHHHHHHHhcCCcccccccCCCCcchhhhHHHHHHhhhhHHH
Q 004472 692 LAGALSLLKDRGTLKEGIDWGGRNMDKKRASLLALLMTLQMLI 734 (751)
Q Consensus 692 LAAAL~LLk~KGlLke~vq~~gR~~dkkks~~~~vy~~~~~~~ 734 (751)
|.+|+.|+..+||-..++..++....-.+..+-..|...+-++
T Consensus 13 l~aa~~l~~~~G~~~~t~~~Ia~~agvs~~t~y~~F~sKe~L~ 55 (78)
T d2o7ta1 13 ITTTCNLYRTHHHDSLTMENIAEQAGVGVATLYRNFPDRFTLD 55 (78)
T ss_dssp HHHHHHHHHHSCGGGCCHHHHHHHHTCCHHHHHHHCSSHHHHH
T ss_pred HHHHHHHHHHhCccccCHHHHHHHhCCCHHHHHHHCcCHHHHH
Confidence 6799999999999999988877665555555555555544433
No 9
>d1t56a1 a.4.1.9 (A:22-94) Ethr repressor {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=6.56 E-value=76 Score=23.53 Aligned_cols=38 Identities=24% Similarity=0.221 Sum_probs=27.8
Q ss_pred HHHHHHHHHhcCCcccccccCCCCcchhhhHHHHHHhh
Q 004472 692 LAGALSLLKDRGTLKEGIDWGGRNMDKKRASLLALLMT 729 (751)
Q Consensus 692 LAAAL~LLk~KGlLke~vq~~gR~~dkkks~~~~vy~~ 729 (751)
|-+|+.|+.+.||-..+|...++...-.+..+--.|..
T Consensus 9 l~aa~~l~~~~G~~~~t~~~Ia~~agvs~~t~Y~~F~~ 46 (73)
T d1t56a1 9 LATAENLLEDRPLADISVDDLAKGAGISRPTFYFYFPS 46 (73)
T ss_dssp HHHHHHHHHHSCGGGCCHHHHHHHHTCCHHHHHHHCSS
T ss_pred HHHHHHHHHHhCcccCCHHHHHHHhCCCHHHHHHHCcC
Confidence 57899999999999999988776666555443333333
No 10
>d2gfna1 a.4.1.9 (A:4-80) Probable transcriptional regulator RHA1_ro04631 {Rhodococcus sp. rha1 [TaxId: 101510]}
Probab=6.24 E-value=82 Score=23.71 Aligned_cols=43 Identities=12% Similarity=0.032 Sum_probs=30.7
Q ss_pred HHHHHHHHHhcCCcccccccCCCCcchhhhHHHHHHhhhhHHH
Q 004472 692 LAGALSLLKDRGTLKEGIDWGGRNMDKKRASLLALLMTLQMLI 734 (751)
Q Consensus 692 LAAAL~LLk~KGlLke~vq~~gR~~dkkks~~~~vy~~~~~~~ 734 (751)
|.||+.|+.++||-..++...++...-.+..+-..|....-++
T Consensus 12 l~aa~~l~~~~G~~~~s~~~Ia~~agvs~~~lY~~F~~K~~L~ 54 (77)
T d2gfna1 12 ADAVLALIAREGISAVTTRAVAEESGWSTGVLNHYFGSRHELL 54 (77)
T ss_dssp HHHHHHHHHHHCGGGCCHHHHHHHHSSCHHHHHHHTSSHHHHH
T ss_pred HHHHHHHHHHhCccccCHHHHHHHHCCCHHHHHHHCcCHHHHH
Confidence 5789999999999999888877666655555444555444333
Done!