BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 004475
(751 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2ECF|A Chain A, Crystal Structure Of Dipeptidyl Aminopeptidase Iv From
Stenotrophomonas Maltophilia
Length = 741
Score = 58.2 bits (139), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 43/152 (28%), Positives = 66/152 (43%), Gaps = 14/152 (9%)
Query: 599 DPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGSYNKTLTPFGFQTEFRTLWEATNV 658
DP+RI V G S G +MT LLA A + CG+A + + L + + L +
Sbjct: 600 DPARIGVQGWSNGGYMTLMLLAKASDSYACGVAGAPVTDWGLYDSHYTERYMDLPARNDA 659
Query: 659 -YIEMSPITHANKIKKPILIIHGEVDDKVGLFPMQAERFFDALKGHGALSRLVLLPFEHH 717
Y E +TH ++ P+L+IHG DD V LF + AL+ G L+ P H
Sbjct: 660 GYREARVLTHIEGLRSPLLLIHGMADDNV-LF-TNSTSLMSALQKRGQPFELMTYPGAKH 717
Query: 718 VYAARENVMHVIWETDRWLQKYCLSNTSDGKC 749
+ + L +Y ++ G+C
Sbjct: 718 GLSGADA-----------LHRYRVAEAFLGRC 738
>pdb|2QR5|A Chain A, Aeropyrum Pernix Acylaminoacyl Peptidase, H367a Mutant
pdb|2QR5|B Chain B, Aeropyrum Pernix Acylaminoacyl Peptidase, H367a Mutant
Length = 582
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 34/134 (25%), Positives = 59/134 (44%), Gaps = 7/134 (5%)
Query: 601 SRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGSYN----KTLTPFGFQTEFRTLWEAT 656
S + + G+SYG +MT L P LF G+A + + L+ F+ L +
Sbjct: 437 SELYIMGYSYGGYMTLCALTMKPGLFKAGVAGASVVDWEEMYELSDAAFRNFIEQLTGGS 496
Query: 657 N-VYIEMSPITHANKIKKPILIIHGEVDDKVGLFPMQAERFFDALKGHGALSRLVLLPFE 715
+ SPI H ++IK+P+ +IH + D + L P+ R L G ++P
Sbjct: 497 REIMRSRSPINHVDRIKEPLALIHPQNDSRTPLKPLL--RLMGELLARGKTFEAHIIPDA 554
Query: 716 HHVYAARENVMHVI 729
H E+ + ++
Sbjct: 555 GHAINTMEDAVKIL 568
>pdb|2QZP|A Chain A, Crystal Structure Of Mutation Of An Acylptide
HydrolaseESTERASE FROM AEROPYRUM PERNIX K1
pdb|2QZP|B Chain B, Crystal Structure Of Mutation Of An Acylptide
HydrolaseESTERASE FROM AEROPYRUM PERNIX K1
Length = 562
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 34/134 (25%), Positives = 59/134 (44%), Gaps = 7/134 (5%)
Query: 601 SRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGSYN----KTLTPFGFQTEFRTLWEAT 656
S + + G+SYG +MT L P LF G+A + + L+ F+ L +
Sbjct: 417 SELYIMGYSYGGYMTLCALTMKPGLFKAGVAGASVVDWEEMYELSDAAFRNFIEQLTGGS 476
Query: 657 N-VYIEMSPITHANKIKKPILIIHGEVDDKVGLFPMQAERFFDALKGHGALSRLVLLPFE 715
+ SPI H ++IK+P+ +IH + D + L P+ R L G ++P
Sbjct: 477 REIMRSRSPINHVDRIKEPLALIHPQNDSRTPLKPLL--RLMGELLARGKTFEAHIIPDA 534
Query: 716 HHVYAARENVMHVI 729
H E+ + ++
Sbjct: 535 GHAINTMEDAVKIL 548
>pdb|1VE6|A Chain A, Crystal Structure Of An Acylpeptide HydrolaseESTERASE FROM
Aeropyrum Pernix K1
pdb|1VE6|B Chain B, Crystal Structure Of An Acylpeptide HydrolaseESTERASE FROM
Aeropyrum Pernix K1
pdb|1VE7|A Chain A, Crystal Structure Of An Acylpeptide HydrolaseESTERASE FROM
AEROPYRUM Pernix K1 In Complex With P-Nitrophenyl
Phosphate
pdb|1VE7|B Chain B, Crystal Structure Of An Acylpeptide HydrolaseESTERASE FROM
AEROPYRUM Pernix K1 In Complex With P-Nitrophenyl
Phosphate
pdb|2HU5|A Chain A, Binding Of Inhibitors By Acylaminoacyl-Peptidase
pdb|2HU5|B Chain B, Binding Of Inhibitors By Acylaminoacyl-Peptidase
pdb|2HU7|A Chain A, Binding Of Inhibitors By Acylaminoacyl Peptidase
pdb|2HU7|B Chain B, Binding Of Inhibitors By Acylaminoacyl Peptidase
pdb|3O4G|A Chain A, Structure And Catalysis Of Acylaminoacyl Peptidase
pdb|3O4G|B Chain B, Structure And Catalysis Of Acylaminoacyl Peptidase
pdb|3O4G|C Chain C, Structure And Catalysis Of Acylaminoacyl Peptidase
pdb|3O4G|D Chain D, Structure And Catalysis Of Acylaminoacyl Peptidase
Length = 582
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 34/134 (25%), Positives = 59/134 (44%), Gaps = 7/134 (5%)
Query: 601 SRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGSYN----KTLTPFGFQTEFRTLWEAT 656
S + + G+SYG +MT L P LF G+A + + L+ F+ L +
Sbjct: 437 SELYIMGYSYGGYMTLCALTMKPGLFKAGVAGASVVDWEEMYELSDAAFRNFIEQLTGGS 496
Query: 657 N-VYIEMSPITHANKIKKPILIIHGEVDDKVGLFPMQAERFFDALKGHGALSRLVLLPFE 715
+ SPI H ++IK+P+ +IH + D + L P+ R L G ++P
Sbjct: 497 REIMRSRSPINHVDRIKEPLALIHPQNDSRTPLKPLL--RLMGELLARGKTFEAHIIPDA 554
Query: 716 HHVYAARENVMHVI 729
H E+ + ++
Sbjct: 555 GHAINTMEDAVKIL 568
>pdb|2GBC|A Chain A, Native Dpp-Iv (Cd26) From Rat
pdb|2GBC|B Chain B, Native Dpp-Iv (Cd26) From Rat
pdb|2GBF|A Chain A, Rat Dpp-Iv With Alkynyl Cyanopyrrolidine #1
pdb|2GBF|B Chain B, Rat Dpp-Iv With Alkynyl Cyanopyrrolidine #1
pdb|2GBG|A Chain A, Rat Dpp-Iv With Alkynyl Cyanopyrrolidine #2
pdb|2GBG|B Chain B, Rat Dpp-Iv With Alkynyl Cyanopyrrolidine #2
pdb|2GBI|A Chain A, Rat Dpp-Iv With Xanthine Inhibitor 4
pdb|2GBI|B Chain B, Rat Dpp-Iv With Xanthine Inhibitor 4
pdb|2I3Z|A Chain A, Rat Dpp-iv With Xanthine Mimetic Inhibitor #7
pdb|2I3Z|B Chain B, Rat Dpp-iv With Xanthine Mimetic Inhibitor #7
pdb|2OAE|A Chain A, Crystal Structure Of Rat Dipeptidyl Peptidase (Dppiv) With
Thiazole-Based Peptide Mimetic #31
pdb|2OAE|B Chain B, Crystal Structure Of Rat Dipeptidyl Peptidase (Dppiv) With
Thiazole-Based Peptide Mimetic #31
pdb|4FFV|A Chain A, Crystal Structure Of Dipeptidyl Peptidase Iv (Dpp4,
Dpp-Iv, Cd26) In Complex With 11a19 Fab
pdb|4FFV|B Chain B, Crystal Structure Of Dipeptidyl Peptidase Iv (Dpp4,
Dpp-Iv, Cd26) In Complex With 11a19 Fab
pdb|4FFW|A Chain A, Crystal Structure Of Dipeptidyl Peptidase Iv (Dpp4,
Dpp-Iv, Cd26) In Complex With Fab + Sitagliptin
pdb|4FFW|B Chain B, Crystal Structure Of Dipeptidyl Peptidase Iv (Dpp4,
Dpp-Iv, Cd26) In Complex With Fab + Sitagliptin
Length = 730
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 71/280 (25%), Positives = 110/280 (39%), Gaps = 35/280 (12%)
Query: 479 LQKEMIKYQRKDGVPLTATLY-----LPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVR 533
LQ + ++ D + L T + LPP +D+SK PL +A P K+ DAA ++
Sbjct: 468 LQDVQMPSKKLDFIVLNETRFWYQMILPPHFDKSKKYPLLIDVYAGPCSQKA-DAAFRL- 525
Query: 534 GSPNEFSGMTPTSSLIFLARRFAVLAGPSIPIIGEGDKLP---NDRFXXXXXXXXXXXXX 590
N + + T ++I A G +GDK+ N R
Sbjct: 526 ---NWATYLASTENIIV-----ASFDGRGSGY--QGDKIMHAINKRLGTLEVEDQIEAAR 575
Query: 591 XXXXXXXXDPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIA-----RSGSYNKTLTP--F 643
D R+A+ G SYG ++T+ +L +F CGIA R Y+ T
Sbjct: 576 QFLKMGFVDSKRVAIWGWSYGGYVTSMVLGSGSGVFKCGIAVAPVSRWEYYDSVYTERYM 635
Query: 644 GFQTEFRTLWEATNVYIEMSPITHANKIKK-PILIIHGEVDDKVGLFPMQAERFFDALKG 702
G T L + Y + ++ A K+ L+IHG DD V Q+ + AL
Sbjct: 636 GLPTPEDNL----DHYRNSTVMSRAENFKQVEYLLIHGTADDNVHF--QQSAQISKALVD 689
Query: 703 HGALSRLVLLPFEHHVYAARENVMHVIWETDRWLQKYCLS 742
G + + E H A+ H+ +LQ+ C S
Sbjct: 690 AGVDFQAMWYTDEDHGIASSTAHQHIYSHMSHFLQQ-CFS 728
>pdb|2HU8|A Chain A, Binding Of Inhibitors By Acylaminoacyl Peptidase
pdb|2HU8|B Chain B, Binding Of Inhibitors By Acylaminoacyl Peptidase
Length = 582
Score = 47.8 bits (112), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 33/134 (24%), Positives = 59/134 (44%), Gaps = 7/134 (5%)
Query: 601 SRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGSYN----KTLTPFGFQTEFRTLWEAT 656
S + + G++YG +MT L P LF G+A + + L+ F+ L +
Sbjct: 437 SELYIMGYAYGGYMTLCALTMKPGLFKAGVAGASVVDWEEMYELSDAAFRNFIEQLTGGS 496
Query: 657 N-VYIEMSPITHANKIKKPILIIHGEVDDKVGLFPMQAERFFDALKGHGALSRLVLLPFE 715
+ SPI H ++IK+P+ +IH + D + L P+ R L G ++P
Sbjct: 497 REIMRSRSPINHVDRIKEPLALIHPQNDSRTPLKPLL--RLMGELLARGKTFEAHIIPDA 554
Query: 716 HHVYAARENVMHVI 729
H E+ + ++
Sbjct: 555 GHAINTMEDAVKIL 568
>pdb|3O4J|A Chain A, Structure And Catalysis Of Acylaminoacyl Peptidase
pdb|3O4J|B Chain B, Structure And Catalysis Of Acylaminoacyl Peptidase
pdb|3O4J|C Chain C, Structure And Catalysis Of Acylaminoacyl Peptidase
pdb|3O4J|D Chain D, Structure And Catalysis Of Acylaminoacyl Peptidase
Length = 582
Score = 46.6 bits (109), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 33/134 (24%), Positives = 59/134 (44%), Gaps = 7/134 (5%)
Query: 601 SRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGSYN----KTLTPFGFQTEFRTLWEAT 656
S + + G+SYG +MT L P LF G+A + + L+ F+ L +
Sbjct: 437 SELYIMGYSYGGYMTLCALTMKPGLFKAGVAGASVVDWEEMYELSDAAFRNFIEQLTGGS 496
Query: 657 N-VYIEMSPITHANKIKKPILIIHGEVDDKVGLFPMQAERFFDALKGHGALSRLVLLPFE 715
+ SPI H ++IK+P+ +IH + + + L P+ R L G ++P
Sbjct: 497 REIMRSRSPINHVDRIKEPLALIHPQNNSRTPLKPLL--RLMGELLARGKTFEAHIIPDA 554
Query: 716 HHVYAARENVMHVI 729
H E+ + ++
Sbjct: 555 GHAINTMEDAVKIL 568
>pdb|3O4H|A Chain A, Structure And Catalysis Of Acylaminoacyl Peptidase
pdb|3O4H|B Chain B, Structure And Catalysis Of Acylaminoacyl Peptidase
pdb|3O4H|C Chain C, Structure And Catalysis Of Acylaminoacyl Peptidase
pdb|3O4H|D Chain D, Structure And Catalysis Of Acylaminoacyl Peptidase
pdb|3O4I|A Chain A, Structure And Catalysis Of Acylaminoacyl Peptidase
pdb|3O4I|B Chain B, Structure And Catalysis Of Acylaminoacyl Peptidase
Length = 582
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 33/134 (24%), Positives = 58/134 (43%), Gaps = 7/134 (5%)
Query: 601 SRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGSYN----KTLTPFGFQTEFRTLWEAT 656
S + + G+SYG +MT L P LF G+A + + L+ F+ L +
Sbjct: 437 SELYIMGYSYGGYMTLCALTMKPGLFKAGVAGASVVDWEEMYELSDAAFRNFIEQLTGGS 496
Query: 657 N-VYIEMSPITHANKIKKPILIIHGEVDDKVGLFPMQAERFFDALKGHGALSRLVLLPFE 715
+ SPI H ++IK+P+ +IH + + L P+ R L G ++P
Sbjct: 497 REIMRSRSPINHVDRIKEPLALIHPQNASRTPLKPLL--RLMGELLARGKTFEAHIIPDA 554
Query: 716 HHVYAARENVMHVI 729
H E+ + ++
Sbjct: 555 GHAINTMEDAVKIL 568
>pdb|1XFD|A Chain A, Structure Of A Human A-Type Potassium Channel Accelerating
Factor Dppx, A Member Of The Dipeptidyl Aminopeptidase
Family
pdb|1XFD|B Chain B, Structure Of A Human A-Type Potassium Channel Accelerating
Factor Dppx, A Member Of The Dipeptidyl Aminopeptidase
Family
pdb|1XFD|C Chain C, Structure Of A Human A-Type Potassium Channel Accelerating
Factor Dppx, A Member Of The Dipeptidyl Aminopeptidase
Family
pdb|1XFD|D Chain D, Structure Of A Human A-Type Potassium Channel Accelerating
Factor Dppx, A Member Of The Dipeptidyl Aminopeptidase
Family
Length = 723
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 36/136 (26%), Positives = 58/136 (42%), Gaps = 8/136 (5%)
Query: 599 DPSRIAVGGHSYGAFMTAHLL----AHAPHLFCCGIARSGSYNKTLTPFGFQTEFRTLWE 654
D +R+AV G YG +++ ++L + F CG A S + L F + L
Sbjct: 576 DRTRVAVFGKDYGGYLSTYILPAKGENQGQTFTCGSALSPITDFKLYASAFSERYLGLHG 635
Query: 655 ATNVYIEMSPITHANKI--KKPILIIHGEVDDKVGLFPMQAERFFDALKGHGALSRLVLL 712
N EM+ + H ++ LIIH D+K+ F AE ++G S L +
Sbjct: 636 LDNRAYEMTKVAHRVSALEEQQFLIIHPTADEKIH-FQHTAELITQLIRGKANYS-LQIY 693
Query: 713 PFEHHVYAARENVMHV 728
P E H + + H+
Sbjct: 694 PDESHYFTSSSLKQHL 709
>pdb|2QJR|A Chain A, Dipepdyl Peptidase Iv In Complex With Inhibitor Pzf
pdb|2QJR|B Chain B, Dipepdyl Peptidase Iv In Complex With Inhibitor Pzf
pdb|3F8S|A Chain A, Crystal Structure Of Dipeptidyl Peptidase Iv In Complex
With Inhibitor
pdb|3F8S|B Chain B, Crystal Structure Of Dipeptidyl Peptidase Iv In Complex
With Inhibitor
Length = 748
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 68/280 (24%), Positives = 108/280 (38%), Gaps = 35/280 (12%)
Query: 479 LQKEMIKYQRKDGVPLTAT-----LYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVR 533
LQ + ++ D + L T + LPP +D+SK PL +A P K+ D ++
Sbjct: 474 LQNVQMPSKKLDFIILNETKFWYQMILPPHFDKSKKYPLLLDVYAGPCSQKA-DTVFRL- 531
Query: 534 GSPNEFSGMTPTSSLIFLARRFAVLAGPSIPIIGEGDKLP---NDRFXXXXXXXXXXXXX 590
N + + T ++I A G +GDK+ N R
Sbjct: 532 ---NWATYLASTENIIV-----ASFDGRGSGY--QGDKIMHAINRRLGTFEVEDQIEAAR 581
Query: 591 XXXXXXXXDPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIA-----RSGSYNKTLTP--F 643
D RIA+ G SYG ++T+ +L +F CGIA R Y+ T
Sbjct: 582 QFSKMGFVDNKRIAIWGWSYGGYVTSMVLGSGSGVFKCGIAVAPVSRWEYYDSVYTERYM 641
Query: 644 GFQTEFRTLWEATNVYIEMSPITHANKIKK-PILIIHGEVDDKVGLFPMQAERFFDALKG 702
G T L + Y + ++ A K+ L+IHG DD V Q+ + AL
Sbjct: 642 GLPTPEDNL----DHYRNSTVMSRAENFKQVEYLLIHGTADDNVHF--QQSAQISKALVD 695
Query: 703 HGALSRLVLLPFEHHVYAARENVMHVIWETDRWLQKYCLS 742
G + + E H A+ H+ ++++ C S
Sbjct: 696 VGVDFQAMWYTDEDHGIASSTAHQHIYTHMSHFIKQ-CFS 734
>pdb|3QBJ|A Chain A, Crystal Structure Of Dipeptidyl Peptidase Iv In Complex
With Inhibitor
pdb|3QBJ|B Chain B, Crystal Structure Of Dipeptidyl Peptidase Iv In Complex
With Inhibitor
Length = 748
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 68/280 (24%), Positives = 108/280 (38%), Gaps = 35/280 (12%)
Query: 479 LQKEMIKYQRKDGVPLTAT-----LYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVR 533
LQ + ++ D + L T + LPP +D+SK PL +A P K+ D ++
Sbjct: 474 LQNVQMPSKKLDFIILAETKFWYQMILPPHFDKSKKYPLLLDVYAGPCSQKA-DTVFRL- 531
Query: 534 GSPNEFSGMTPTSSLIFLARRFAVLAGPSIPIIGEGDKLP---NDRFXXXXXXXXXXXXX 590
N + + T ++I A G +GDK+ N R
Sbjct: 532 ---NWATYLASTENIIV-----ASFDGRGSGY--QGDKIMHAINRRLGTFEVEDQIEAAR 581
Query: 591 XXXXXXXXDPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIA-----RSGSYNKTLTP--F 643
D RIA+ G SYG ++T+ +L +F CGIA R Y+ T
Sbjct: 582 QFSKMGFVDNKRIAIWGWSYGGYVTSMVLGSGSGVFKCGIAVAPVSRWEYYDSVYTERYM 641
Query: 644 GFQTEFRTLWEATNVYIEMSPITHANKIKK-PILIIHGEVDDKVGLFPMQAERFFDALKG 702
G T L + Y + ++ A K+ L+IHG DD V Q+ + AL
Sbjct: 642 GLPTPEDNL----DHYRNSTVMSRAENFKQVEYLLIHGTADDNVHF--QQSAQISKALVD 695
Query: 703 HGALSRLVLLPFEHHVYAARENVMHVIWETDRWLQKYCLS 742
G + + E H A+ H+ ++++ C S
Sbjct: 696 VGVDFQAMWYTDEDHGIASSTAHQHIYTHMSHFIKQ-CFS 734
>pdb|2RIP|A Chain A, Structure Of Dppiv In Complex With An Inhibitor
Length = 729
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 68/280 (24%), Positives = 108/280 (38%), Gaps = 35/280 (12%)
Query: 479 LQKEMIKYQRKDGVPLTAT-----LYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVR 533
LQ + ++ D + L T + LPP +D+SK PL +A P K+ D ++
Sbjct: 467 LQNVQMPSKKLDFIILNETKFWYQMILPPHFDKSKKYPLLLDVYAGPCSQKA-DTVFRL- 524
Query: 534 GSPNEFSGMTPTSSLIFLARRFAVLAGPSIPIIGEGDKLP---NDRFXXXXXXXXXXXXX 590
N + + T ++I A G +GDK+ N R
Sbjct: 525 ---NWATYLASTENIIV-----ASFDGRGSGY--QGDKIMHAINRRLGTFEVEDQIEAAR 574
Query: 591 XXXXXXXXDPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIA-----RSGSYNKTLTP--F 643
D RIA+ G SYG ++T+ +L +F CGIA R Y+ T
Sbjct: 575 QFSKMGFVDNKRIAIWGWSYGGYVTSMVLGSGSGVFKCGIAVAPVSRWEYYDSVYTERYM 634
Query: 644 GFQTEFRTLWEATNVYIEMSPITHANKIKK-PILIIHGEVDDKVGLFPMQAERFFDALKG 702
G T L + Y + ++ A K+ L+IHG DD V Q+ + AL
Sbjct: 635 GLPTPEDNL----DHYRNSTVMSRAENFKQVEYLLIHGTADDNVHF--QQSAQISKALVD 688
Query: 703 HGALSRLVLLPFEHHVYAARENVMHVIWETDRWLQKYCLS 742
G + + E H A+ H+ ++++ C S
Sbjct: 689 VGVDFQAMWYTDEDHGIASSTAHQHIYTHMSHFIKQ-CFS 727
>pdb|1X70|A Chain A, Human Dipeptidyl Peptidase Iv In Complex With A Beta Amino
Acid Inhibitor
pdb|1X70|B Chain B, Human Dipeptidyl Peptidase Iv In Complex With A Beta Amino
Acid Inhibitor
pdb|2FJP|A Chain A, Human Dipeptidyl Peptidase IvCD26 IN COMPLEX WITH AN
INHIBITOR
pdb|2FJP|B Chain B, Human Dipeptidyl Peptidase IvCD26 IN COMPLEX WITH AN
INHIBITOR
pdb|2HHA|A Chain A, The Structure Of Dpp4 In Complex With An Oxadiazole
Inhibitor
pdb|2HHA|B Chain B, The Structure Of Dpp4 In Complex With An Oxadiazole
Inhibitor
pdb|2IIT|A Chain A, Human Dipeptidyl Peptidase 4 In Complex With A
Diazepan-2-one Inhibitor
pdb|2IIT|B Chain B, Human Dipeptidyl Peptidase 4 In Complex With A
Diazepan-2-one Inhibitor
pdb|2IIV|A Chain A, Human Dipeptidyl Peptidase 4 In Complex With A
Diazepan-2-One Inhibitor
pdb|2IIV|B Chain B, Human Dipeptidyl Peptidase 4 In Complex With A
Diazepan-2-One Inhibitor
pdb|2OPH|A Chain A, Human Dipeptidyl Peptidase Iv In Complex With An Alpha
Amino Acid Inhibitor
pdb|2OPH|B Chain B, Human Dipeptidyl Peptidase Iv In Complex With An Alpha
Amino Acid Inhibitor
pdb|2P8S|A Chain A, Human Dipeptidyl Peptidase IvCD26 IN COMPLEX WITH A
CYCLOHEXALAMINE Inhibitor
pdb|2P8S|B Chain B, Human Dipeptidyl Peptidase IvCD26 IN COMPLEX WITH A
CYCLOHEXALAMINE Inhibitor
pdb|2QOE|A Chain A, Human Dipeptidyl Peptidase Iv In Complex With A
Triazolopiperazine- Based Beta Amino Acid Inhibitor
pdb|2QOE|B Chain B, Human Dipeptidyl Peptidase Iv In Complex With A
Triazolopiperazine- Based Beta Amino Acid Inhibitor
pdb|3C43|A Chain A, Human Dipeptidyl Peptidase IvCD26 IN COMPLEX WITH A
FLOUROOLEFIN Inhibitor
pdb|3C43|B Chain B, Human Dipeptidyl Peptidase IvCD26 IN COMPLEX WITH A
FLOUROOLEFIN Inhibitor
pdb|3C45|A Chain A, Human Dipeptidyl Peptidase IvCD26 IN COMPLEX WITH A
FLUOROOLEFIN Inhibitor
pdb|3C45|B Chain B, Human Dipeptidyl Peptidase IvCD26 IN COMPLEX WITH A
FLUOROOLEFIN Inhibitor
pdb|3D4L|A Chain A, Human Dipeptidyl Peptidase Iv/cd26 In Complex With A Novel
Inhibitor
pdb|3D4L|B Chain B, Human Dipeptidyl Peptidase Iv/cd26 In Complex With A Novel
Inhibitor
pdb|2QKY|A Chain A, Complex Structure Of Dipeptidyl Peptidase Iv And A
Oxadiazolyl Ketone
pdb|2QKY|B Chain B, Complex Structure Of Dipeptidyl Peptidase Iv And A
Oxadiazolyl Ketone
pdb|2QKY|C Chain C, Complex Structure Of Dipeptidyl Peptidase Iv And A
Oxadiazolyl Ketone
pdb|2QKY|D Chain D, Complex Structure Of Dipeptidyl Peptidase Iv And A
Oxadiazolyl Ketone
pdb|3HAB|A Chain A, The Structure Of Dpp4 In Complex With Piperidine Fused
Benzimidazole 25
pdb|3HAB|B Chain B, The Structure Of Dpp4 In Complex With Piperidine Fused
Benzimidazole 25
pdb|3HAC|A Chain A, The Structure Of Dpp-4 In Complex With Piperidine Fused
Imidazopyridine 34
pdb|3HAC|B Chain B, The Structure Of Dpp-4 In Complex With Piperidine Fused
Imidazopyridine 34
Length = 728
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 68/280 (24%), Positives = 108/280 (38%), Gaps = 35/280 (12%)
Query: 479 LQKEMIKYQRKDGVPLTAT-----LYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVR 533
LQ + ++ D + L T + LPP +D+SK PL +A P K+ D ++
Sbjct: 466 LQNVQMPSKKLDFIILNETKFWYQMILPPHFDKSKKYPLLLDVYAGPCSQKA-DTVFRL- 523
Query: 534 GSPNEFSGMTPTSSLIFLARRFAVLAGPSIPIIGEGDKLP---NDRFXXXXXXXXXXXXX 590
N + + T ++I A G +GDK+ N R
Sbjct: 524 ---NWATYLASTENIIV-----ASFDGRGSGY--QGDKIMHAINRRLGTFEVEDQIEAAR 573
Query: 591 XXXXXXXXDPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIA-----RSGSYNKTLTP--F 643
D RIA+ G SYG ++T+ +L +F CGIA R Y+ T
Sbjct: 574 QFSKMGFVDNKRIAIWGWSYGGYVTSMVLGSGSGVFKCGIAVAPVSRWEYYDSVYTERYM 633
Query: 644 GFQTEFRTLWEATNVYIEMSPITHANKIKK-PILIIHGEVDDKVGLFPMQAERFFDALKG 702
G T L + Y + ++ A K+ L+IHG DD V Q+ + AL
Sbjct: 634 GLPTPEDNL----DHYRNSTVMSRAENFKQVEYLLIHGTADDNVHF--QQSAQISKALVD 687
Query: 703 HGALSRLVLLPFEHHVYAARENVMHVIWETDRWLQKYCLS 742
G + + E H A+ H+ ++++ C S
Sbjct: 688 VGVDFQAMWYTDEDHGIASSTAHQHIYTHMSHFIKQ-CFS 726
>pdb|1PFQ|A Chain A, Crystal Structure Of Human Apo Dipeptidyl Peptidase Iv /
Cd26
pdb|1PFQ|B Chain B, Crystal Structure Of Human Apo Dipeptidyl Peptidase Iv /
Cd26
Length = 731
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 68/280 (24%), Positives = 108/280 (38%), Gaps = 35/280 (12%)
Query: 479 LQKEMIKYQRKDGVPLTAT-----LYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVR 533
LQ + ++ D + L T + LPP +D+SK PL +A P K+ D ++
Sbjct: 469 LQNVQMPSKKLDFIILNETKFWYQMILPPHFDKSKKYPLLLDVYAGPCSQKA-DTVFRL- 526
Query: 534 GSPNEFSGMTPTSSLIFLARRFAVLAGPSIPIIGEGDKLP---NDRFXXXXXXXXXXXXX 590
N + + T ++I A G +GDK+ N R
Sbjct: 527 ---NWATYLASTENIIV-----ASFDGRGSGY--QGDKIMHAINRRLGTFEVEDQIEAAR 576
Query: 591 XXXXXXXXDPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIA-----RSGSYNKTLTP--F 643
D RIA+ G SYG ++T+ +L +F CGIA R Y+ T
Sbjct: 577 QFSKMGFVDNKRIAIWGWSYGGYVTSMVLGSGSGVFKCGIAVAPVSRWEYYDSVYTERYM 636
Query: 644 GFQTEFRTLWEATNVYIEMSPITHANKIKK-PILIIHGEVDDKVGLFPMQAERFFDALKG 702
G T L + Y + ++ A K+ L+IHG DD V Q+ + AL
Sbjct: 637 GLPTPEDNL----DHYRNSTVMSRAENFKQVEYLLIHGTADDNVHF--QQSAQISKALVD 690
Query: 703 HGALSRLVLLPFEHHVYAARENVMHVIWETDRWLQKYCLS 742
G + + E H A+ H+ ++++ C S
Sbjct: 691 VGVDFQAMWYTDEDHGIASSTAHQHIYTHMSHFIKQ-CFS 729
>pdb|1J2E|A Chain A, Crystal Structure Of Human Dipeptidyl Peptidase Iv
pdb|1J2E|B Chain B, Crystal Structure Of Human Dipeptidyl Peptidase Iv
pdb|1WCY|A Chain A, Crystal Structure Of Human Dipeptidyl Peptidase Iv (dppiv)
Complex With Diprotin A
pdb|1WCY|B Chain B, Crystal Structure Of Human Dipeptidyl Peptidase Iv (dppiv)
Complex With Diprotin A
pdb|3VJM|A Chain A, Crystal Structure Of Human Depiptidyl Peptidase Iv (Dpp-4)
In Complex With A Prolylthiazolidine Inhibitor #1
pdb|3VJM|B Chain B, Crystal Structure Of Human Depiptidyl Peptidase Iv (Dpp-4)
In Complex With A Prolylthiazolidine Inhibitor #1
pdb|3VJK|A Chain A, Crystal Structure Of Human Depiptidyl Peptidase Iv (Dpp-4)
In Complex With Mp-513
pdb|3VJK|B Chain B, Crystal Structure Of Human Depiptidyl Peptidase Iv (Dpp-4)
In Complex With Mp-513
pdb|3VJL|A Chain A, Crystal Structure Of Human Depiptidyl Peptidase Iv (Dpp-4)
In Complex With A Prolylthiazolidine Inhibitor #2
pdb|3VJL|B Chain B, Crystal Structure Of Human Depiptidyl Peptidase Iv (Dpp-4)
In Complex With A Prolylthiazolidine Inhibitor #2
Length = 740
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 68/280 (24%), Positives = 108/280 (38%), Gaps = 35/280 (12%)
Query: 479 LQKEMIKYQRKDGVPLTAT-----LYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVR 533
LQ + ++ D + L T + LPP +D+SK PL +A P K+ D ++
Sbjct: 472 LQNVQMPSKKLDFIILNETKFWYQMILPPHFDKSKKYPLLLDVYAGPCSQKA-DTVFRL- 529
Query: 534 GSPNEFSGMTPTSSLIFLARRFAVLAGPSIPIIGEGDKLP---NDRFXXXXXXXXXXXXX 590
N + + T ++I A G +GDK+ N R
Sbjct: 530 ---NWATYLASTENIIV-----ASFDGRGSGY--QGDKIMHAINRRLGTFEVEDQIEAAR 579
Query: 591 XXXXXXXXDPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIA-----RSGSYNKTLTP--F 643
D RIA+ G SYG ++T+ +L +F CGIA R Y+ T
Sbjct: 580 QFSKMGFVDNKRIAIWGWSYGGYVTSMVLGSGSGVFKCGIAVAPVSRWEYYDSVYTERYM 639
Query: 644 GFQTEFRTLWEATNVYIEMSPITHANKIKK-PILIIHGEVDDKVGLFPMQAERFFDALKG 702
G T L + Y + ++ A K+ L+IHG DD V Q+ + AL
Sbjct: 640 GLPTPEDNL----DHYRNSTVMSRAENFKQVEYLLIHGTADDNVHF--QQSAQISKALVD 693
Query: 703 HGALSRLVLLPFEHHVYAARENVMHVIWETDRWLQKYCLS 742
G + + E H A+ H+ ++++ C S
Sbjct: 694 VGVDFQAMWYTDEDHGIASSTAHQHIYTHMSHFIKQ-CFS 732
>pdb|3CCB|A Chain A, Crystal Structure Of Human Dpp4 In Complex With A
Benzimidazole Derivative
pdb|3CCB|B Chain B, Crystal Structure Of Human Dpp4 In Complex With A
Benzimidazole Derivative
pdb|3CCB|C Chain C, Crystal Structure Of Human Dpp4 In Complex With A
Benzimidazole Derivative
pdb|3CCB|D Chain D, Crystal Structure Of Human Dpp4 In Complex With A
Benzimidazole Derivative
pdb|3CCC|A Chain A, Crystal Structure Of Human Dpp4 In Complex With A
Benzimidazole Derivative
pdb|3CCC|B Chain B, Crystal Structure Of Human Dpp4 In Complex With A
Benzimidazole Derivative
pdb|3CCC|C Chain C, Crystal Structure Of Human Dpp4 In Complex With A
Benzimidazole Derivative
pdb|3CCC|D Chain D, Crystal Structure Of Human Dpp4 In Complex With A
Benzimidazole Derivative
pdb|3G0B|A Chain A, Crystal Structure Of Dipeptidyl Peptidase Iv In Complex
With Tak-322
pdb|3G0B|B Chain B, Crystal Structure Of Dipeptidyl Peptidase Iv In Complex
With Tak-322
pdb|3G0B|C Chain C, Crystal Structure Of Dipeptidyl Peptidase Iv In Complex
With Tak-322
pdb|3G0B|D Chain D, Crystal Structure Of Dipeptidyl Peptidase Iv In Complex
With Tak-322
pdb|3G0C|A Chain A, Crystal Structure Of Dipeptidyl Peptidase Iv In Complex
With A Pyrimidinedione Inhibitor 1
pdb|3G0C|B Chain B, Crystal Structure Of Dipeptidyl Peptidase Iv In Complex
With A Pyrimidinedione Inhibitor 1
pdb|3G0C|C Chain C, Crystal Structure Of Dipeptidyl Peptidase Iv In Complex
With A Pyrimidinedione Inhibitor 1
pdb|3G0C|D Chain D, Crystal Structure Of Dipeptidyl Peptidase Iv In Complex
With A Pyrimidinedione Inhibitor 1
pdb|3G0D|A Chain A, Crystal Structure Of Dipeptidyl Peptidase Iv In Complex
With A Pyrimidinedione Inhibitor 2
pdb|3G0D|B Chain B, Crystal Structure Of Dipeptidyl Peptidase Iv In Complex
With A Pyrimidinedione Inhibitor 2
pdb|3G0D|C Chain C, Crystal Structure Of Dipeptidyl Peptidase Iv In Complex
With A Pyrimidinedione Inhibitor 2
pdb|3G0D|D Chain D, Crystal Structure Of Dipeptidyl Peptidase Iv In Complex
With A Pyrimidinedione Inhibitor 2
pdb|3G0G|A Chain A, Crystal Structure Of Dipeptidyl Peptidase Iv In Complex
With A Pyrimidinone Inhibitor 3
pdb|3G0G|B Chain B, Crystal Structure Of Dipeptidyl Peptidase Iv In Complex
With A Pyrimidinone Inhibitor 3
pdb|3G0G|C Chain C, Crystal Structure Of Dipeptidyl Peptidase Iv In Complex
With A Pyrimidinone Inhibitor 3
pdb|3G0G|D Chain D, Crystal Structure Of Dipeptidyl Peptidase Iv In Complex
With A Pyrimidinone Inhibitor 3
pdb|3O95|A Chain A, Crystal Structure Of Human Dpp4 Bound To Tak-100
pdb|3O95|B Chain B, Crystal Structure Of Human Dpp4 Bound To Tak-100
pdb|3O95|C Chain C, Crystal Structure Of Human Dpp4 Bound To Tak-100
pdb|3O95|D Chain D, Crystal Structure Of Human Dpp4 Bound To Tak-100
pdb|3O9V|A Chain A, Crystal Structure Of Human Dpp4 Bound To Tak-986
pdb|3O9V|B Chain B, Crystal Structure Of Human Dpp4 Bound To Tak-986
pdb|3O9V|C Chain C, Crystal Structure Of Human Dpp4 Bound To Tak-986
pdb|3O9V|D Chain D, Crystal Structure Of Human Dpp4 Bound To Tak-986
pdb|3OPM|A Chain A, Crystal Structure Of Human Dpp4 Bound To Tak-294
pdb|3OPM|B Chain B, Crystal Structure Of Human Dpp4 Bound To Tak-294
pdb|3OPM|C Chain C, Crystal Structure Of Human Dpp4 Bound To Tak-294
pdb|3OPM|D Chain D, Crystal Structure Of Human Dpp4 Bound To Tak-294
pdb|4G1F|A Chain A, Crystal Structure Of Human Dipeptidyl Peptidase Iv In
Complex With A Pyridopyrimidinedione Analogue
pdb|4G1F|B Chain B, Crystal Structure Of Human Dipeptidyl Peptidase Iv In
Complex With A Pyridopyrimidinedione Analogue
pdb|4G1F|C Chain C, Crystal Structure Of Human Dipeptidyl Peptidase Iv In
Complex With A Pyridopyrimidinedione Analogue
pdb|4G1F|D Chain D, Crystal Structure Of Human Dipeptidyl Peptidase Iv In
Complex With A Pyridopyrimidinedione Analogue
Length = 740
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 68/280 (24%), Positives = 108/280 (38%), Gaps = 35/280 (12%)
Query: 479 LQKEMIKYQRKDGVPLTAT-----LYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVR 533
LQ + ++ D + L T + LPP +D+SK PL +A P K+ D ++
Sbjct: 478 LQNVQMPSKKLDFIILNETKFWYQMILPPHFDKSKKYPLLLDVYAGPCSQKA-DTVFRL- 535
Query: 534 GSPNEFSGMTPTSSLIFLARRFAVLAGPSIPIIGEGDKLP---NDRFXXXXXXXXXXXXX 590
N + + T ++I A G +GDK+ N R
Sbjct: 536 ---NWATYLASTENIIV-----ASFDGRGSGY--QGDKIMHAINRRLGTFEVEDQIEAAR 585
Query: 591 XXXXXXXXDPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIA-----RSGSYNKTLTP--F 643
D RIA+ G SYG ++T+ +L +F CGIA R Y+ T
Sbjct: 586 QFSKMGFVDNKRIAIWGWSYGGYVTSMVLGSGSGVFKCGIAVAPVSRWEYYDSVYTERYM 645
Query: 644 GFQTEFRTLWEATNVYIEMSPITHANKIKK-PILIIHGEVDDKVGLFPMQAERFFDALKG 702
G T L + Y + ++ A K+ L+IHG DD V Q+ + AL
Sbjct: 646 GLPTPEDNL----DHYRNSTVMSRAENFKQVEYLLIHGTADDNVHF--QQSAQISKALVD 699
Query: 703 HGALSRLVLLPFEHHVYAARENVMHVIWETDRWLQKYCLS 742
G + + E H A+ H+ ++++ C S
Sbjct: 700 VGVDFQAMWYTDEDHGIASSTAHQHIYTHMSHFIKQ-CFS 738
>pdb|3NOX|A Chain A, Crystal Structure Of Human Dpp-Iv In Complex With
Sa-(+)-(6-
(Aminomethyl)-5-(2,4-Dichlorophenyl)-7-Methylimidazo[1,
2-A]pyrimidin- 2-Yl)(Morpholino)methanone
pdb|3NOX|B Chain B, Crystal Structure Of Human Dpp-Iv In Complex With
Sa-(+)-(6-
(Aminomethyl)-5-(2,4-Dichlorophenyl)-7-Methylimidazo[1,
2-A]pyrimidin- 2-Yl)(Morpholino)methanone
pdb|3SWW|A Chain A, Crystal Structure Of Human Dpp-Iv In Complex With
Sa-(+)-3-
(Aminomethyl)-4-(2,
4-Dichlorophenyl)-6-(2-Methoxyphenyl)- 2-Methyl-
5h-Pyrrolo[3,4-B]pyridin-7(6h)-One
pdb|3SWW|B Chain B, Crystal Structure Of Human Dpp-Iv In Complex With
Sa-(+)-3-
(Aminomethyl)-4-(2,
4-Dichlorophenyl)-6-(2-Methoxyphenyl)- 2-Methyl-
5h-Pyrrolo[3,4-B]pyridin-7(6h)-One
pdb|3SX4|A Chain A, Crystal Structure Of Human Dpp-Iv In Complex With
Sa-(+)-3-
(Aminomethyl)-4-(2,
4-Dichlorophenyl)-6-(2-Methoxyphenyl)- 2-Methyl-
5h-Pyrrolo[3,4-B]pyridin-7(6h)-One
pdb|3SX4|B Chain B, Crystal Structure Of Human Dpp-Iv In Complex With
Sa-(+)-3-
(Aminomethyl)-4-(2,
4-Dichlorophenyl)-6-(2-Methoxyphenyl)- 2-Methyl-
5h-Pyrrolo[3,4-B]pyridin-7(6h)-One
pdb|3Q0T|A Chain A, Crystal Structure Of Human Dpp-iv In Complex Withsa-(+)-
Methyl2-(3-
(aminomethyl)-4-(2,4-dichlorophenyl)-2-methyl-
7-oxo-5h-pyrrolo[3,4- B]pyridin-6(7h)-yl)acetate
pdb|3Q0T|B Chain B, Crystal Structure Of Human Dpp-iv In Complex Withsa-(+)-
Methyl2-(3-
(aminomethyl)-4-(2,4-dichlorophenyl)-2-methyl-
7-oxo-5h-pyrrolo[3,4- B]pyridin-6(7h)-yl)acetate
Length = 753
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 68/280 (24%), Positives = 108/280 (38%), Gaps = 35/280 (12%)
Query: 479 LQKEMIKYQRKDGVPLTAT-----LYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVR 533
LQ + ++ D + L T + LPP +D+SK PL +A P K+ D ++
Sbjct: 468 LQNVQMPSKKLDFIILNETKFWYQMILPPHFDKSKKYPLLLDVYAGPCSQKA-DTVFRL- 525
Query: 534 GSPNEFSGMTPTSSLIFLARRFAVLAGPSIPIIGEGDKLP---NDRFXXXXXXXXXXXXX 590
N + + T ++I A G +GDK+ N R
Sbjct: 526 ---NWATYLASTENIIV-----ASFDGRGSGY--QGDKIMHAINRRLGTFEVEDQIEAAR 575
Query: 591 XXXXXXXXDPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIA-----RSGSYNKTLTP--F 643
D RIA+ G SYG ++T+ +L +F CGIA R Y+ T
Sbjct: 576 QFSKMGFVDNKRIAIWGWSYGGYVTSMVLGSGSGVFKCGIAVAPVSRWEYYDSVYTERYM 635
Query: 644 GFQTEFRTLWEATNVYIEMSPITHANKIKK-PILIIHGEVDDKVGLFPMQAERFFDALKG 702
G T L + Y + ++ A K+ L+IHG DD V Q+ + AL
Sbjct: 636 GLPTPEDNL----DHYRNSTVMSRAENFKQVEYLLIHGTADDNVHF--QQSAQISKALVD 689
Query: 703 HGALSRLVLLPFEHHVYAARENVMHVIWETDRWLQKYCLS 742
G + + E H A+ H+ ++++ C S
Sbjct: 690 VGVDFQAMWYTDEDHGIASSTAHQHIYTHMSHFIKQ-CFS 728
>pdb|1R9N|A Chain A, Crystal Structure Of Human Dipeptidyl Peptidase Iv In
Complex With A Decapeptide (Tnpy) At 2.3 Ang. Resolution
pdb|1R9N|B Chain B, Crystal Structure Of Human Dipeptidyl Peptidase Iv In
Complex With A Decapeptide (Tnpy) At 2.3 Ang. Resolution
pdb|1R9N|C Chain C, Crystal Structure Of Human Dipeptidyl Peptidase Iv In
Complex With A Decapeptide (Tnpy) At 2.3 Ang. Resolution
pdb|1R9N|D Chain D, Crystal Structure Of Human Dipeptidyl Peptidase Iv In
Complex With A Decapeptide (Tnpy) At 2.3 Ang. Resolution
Length = 739
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 68/280 (24%), Positives = 108/280 (38%), Gaps = 35/280 (12%)
Query: 479 LQKEMIKYQRKDGVPLTAT-----LYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVR 533
LQ + ++ D + L T + LPP +D+SK PL +A P K+ D ++
Sbjct: 477 LQNVQMPSKKLDFIILNETKFWYQMILPPHFDKSKKYPLLLDVYAGPCSQKA-DTVFRL- 534
Query: 534 GSPNEFSGMTPTSSLIFLARRFAVLAGPSIPIIGEGDKLP---NDRFXXXXXXXXXXXXX 590
N + + T ++I A G +GDK+ N R
Sbjct: 535 ---NWATYLASTENIIV-----ASFDGRGSGY--QGDKIMHAINRRLGTFEVEDQIEAAR 584
Query: 591 XXXXXXXXDPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIA-----RSGSYNKTLTP--F 643
D RIA+ G SYG ++T+ +L +F CGIA R Y+ T
Sbjct: 585 QFSKMGFVDNKRIAIWGWSYGGYVTSMVLGSGSGVFKCGIAVAPVSRWEYYDSVYTERYM 644
Query: 644 GFQTEFRTLWEATNVYIEMSPITHANKIKK-PILIIHGEVDDKVGLFPMQAERFFDALKG 702
G T L + Y + ++ A K+ L+IHG DD V Q+ + AL
Sbjct: 645 GLPTPEDNL----DHYRNSTVMSRAENFKQVEYLLIHGTADDNVHF--QQSAQISKALVD 698
Query: 703 HGALSRLVLLPFEHHVYAARENVMHVIWETDRWLQKYCLS 742
G + + E H A+ H+ ++++ C S
Sbjct: 699 VGVDFQAMWYTDEDHGIASSTAHQHIYTHMSHFIKQ-CFS 737
>pdb|2QT9|A Chain A, Human Dipeptidyl Peptidase IvCD26 IN COMPLEX WITH A 4-Aryl
Cyclohexylalanine Inhibitor
pdb|2QT9|B Chain B, Human Dipeptidyl Peptidase IvCD26 IN COMPLEX WITH A 4-Aryl
Cyclohexylalanine Inhibitor
pdb|2QTB|A Chain A, Human Dipeptidyl Peptidase IvCD26 IN COMPLEX WITH A 4-Aryl
Cyclohexylalanine Inhibitor
pdb|2QTB|B Chain B, Human Dipeptidyl Peptidase IvCD26 IN COMPLEX WITH A 4-Aryl
Cyclohexylalanine Inhibitor
Length = 766
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 68/280 (24%), Positives = 108/280 (38%), Gaps = 35/280 (12%)
Query: 479 LQKEMIKYQRKDGVPLTAT-----LYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVR 533
LQ + ++ D + L T + LPP +D+SK PL +A P K+ D ++
Sbjct: 504 LQNVQMPSKKLDFIILNETKFWYQMILPPHFDKSKKYPLLLDVYAGPCSQKA-DTVFRL- 561
Query: 534 GSPNEFSGMTPTSSLIFLARRFAVLAGPSIPIIGEGDKLP---NDRFXXXXXXXXXXXXX 590
N + + T ++I A G +GDK+ N R
Sbjct: 562 ---NWATYLASTENIIV-----ASFDGRGSGY--QGDKIMHAINRRLGTFEVEDQIEAAR 611
Query: 591 XXXXXXXXDPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIA-----RSGSYNKTLTP--F 643
D RIA+ G SYG ++T+ +L +F CGIA R Y+ T
Sbjct: 612 QFSKMGFVDNKRIAIWGWSYGGYVTSMVLGSGSGVFKCGIAVAPVSRWEYYDSVYTERYM 671
Query: 644 GFQTEFRTLWEATNVYIEMSPITHANKIKK-PILIIHGEVDDKVGLFPMQAERFFDALKG 702
G T L + Y + ++ A K+ L+IHG DD V Q+ + AL
Sbjct: 672 GLPTPEDNL----DHYRNSTVMSRAENFKQVEYLLIHGTADDNVHF--QQSAQISKALVD 725
Query: 703 HGALSRLVLLPFEHHVYAARENVMHVIWETDRWLQKYCLS 742
G + + E H A+ H+ ++++ C S
Sbjct: 726 VGVDFQAMWYTDEDHGIASSTAHQHIYTHMSHFIKQ-CFS 764
>pdb|1ORV|A Chain A, Crystal Structure Of Porcine Dipeptidyl Peptidase Iv
(Cd26)
pdb|1ORV|B Chain B, Crystal Structure Of Porcine Dipeptidyl Peptidase Iv
(Cd26)
pdb|1ORV|C Chain C, Crystal Structure Of Porcine Dipeptidyl Peptidase Iv
(Cd26)
pdb|1ORV|D Chain D, Crystal Structure Of Porcine Dipeptidyl Peptidase Iv
(Cd26)
pdb|1ORW|A Chain A, Crystal Structure Of Porcine Dipeptidyl Peptidase Iv
(Cd26) In Complex With A Peptidomimetic Inhibitor
pdb|1ORW|B Chain B, Crystal Structure Of Porcine Dipeptidyl Peptidase Iv
(Cd26) In Complex With A Peptidomimetic Inhibitor
pdb|1ORW|C Chain C, Crystal Structure Of Porcine Dipeptidyl Peptidase Iv
(Cd26) In Complex With A Peptidomimetic Inhibitor
pdb|1ORW|D Chain D, Crystal Structure Of Porcine Dipeptidyl Peptidase Iv
(Cd26) In Complex With A Peptidomimetic Inhibitor
pdb|2BUA|A Chain A, Crystal Structure Of Porcine Dipeptidyl Peptidase Iv
(Cd26) In Complex With A Low Molecular Weight Inhibitor.
pdb|2BUA|B Chain B, Crystal Structure Of Porcine Dipeptidyl Peptidase Iv
(Cd26) In Complex With A Low Molecular Weight Inhibitor.
pdb|2BUA|C Chain C, Crystal Structure Of Porcine Dipeptidyl Peptidase Iv
(Cd26) In Complex With A Low Molecular Weight Inhibitor.
pdb|2BUA|D Chain D, Crystal Structure Of Porcine Dipeptidyl Peptidase Iv
(Cd26) In Complex With A Low Molecular Weight Inhibitor.
pdb|2BUC|A Chain A, Crystal Structure Of Porcine Dipeptidyl Peptidase Iv
(Cd26) In Complex With A Tetrahydroisoquinoline
Inhibitor
pdb|2BUC|B Chain B, Crystal Structure Of Porcine Dipeptidyl Peptidase Iv
(Cd26) In Complex With A Tetrahydroisoquinoline
Inhibitor
pdb|2BUC|C Chain C, Crystal Structure Of Porcine Dipeptidyl Peptidase Iv
(Cd26) In Complex With A Tetrahydroisoquinoline
Inhibitor
pdb|2BUC|D Chain D, Crystal Structure Of Porcine Dipeptidyl Peptidase Iv
(Cd26) In Complex With A Tetrahydroisoquinoline
Inhibitor
pdb|2AJ8|A Chain A, Porcine Dipeptidyl Peptidase Iv (Cd26) In Complex With
7-Benzyl-1,3-
Dimethyl-8-Piperazin-1-Yl-3,7-Dihydro-Purine-2,6-Dione
(Bdpx)
pdb|2AJ8|B Chain B, Porcine Dipeptidyl Peptidase Iv (Cd26) In Complex With
7-Benzyl-1,3-
Dimethyl-8-Piperazin-1-Yl-3,7-Dihydro-Purine-2,6-Dione
(Bdpx)
pdb|2AJ8|C Chain C, Porcine Dipeptidyl Peptidase Iv (Cd26) In Complex With
7-Benzyl-1,3-
Dimethyl-8-Piperazin-1-Yl-3,7-Dihydro-Purine-2,6-Dione
(Bdpx)
pdb|2AJ8|D Chain D, Porcine Dipeptidyl Peptidase Iv (Cd26) In Complex With
7-Benzyl-1,3-
Dimethyl-8-Piperazin-1-Yl-3,7-Dihydro-Purine-2,6-Dione
(Bdpx)
pdb|2AJB|A Chain A, Porcine Dipeptidyl Peptidase Iv (Cd26) In Complex With The
Tripeptide Tert-Butyl-Gly-L-Pro-L-Ile (Tbu-Gpi)
pdb|2AJB|B Chain B, Porcine Dipeptidyl Peptidase Iv (Cd26) In Complex With The
Tripeptide Tert-Butyl-Gly-L-Pro-L-Ile (Tbu-Gpi)
pdb|2AJB|C Chain C, Porcine Dipeptidyl Peptidase Iv (Cd26) In Complex With The
Tripeptide Tert-Butyl-Gly-L-Pro-L-Ile (Tbu-Gpi)
pdb|2AJB|D Chain D, Porcine Dipeptidyl Peptidase Iv (Cd26) In Complex With The
Tripeptide Tert-Butyl-Gly-L-Pro-L-Ile (Tbu-Gpi)
pdb|2AJC|A Chain A, Porcine Dipeptidyl Peptidase Iv (Cd26) In Complex With
4-(2- Aminoethyl)-Benzene Sulphonyl Fluoride (Aebsf)
pdb|2AJC|B Chain B, Porcine Dipeptidyl Peptidase Iv (Cd26) In Complex With
4-(2- Aminoethyl)-Benzene Sulphonyl Fluoride (Aebsf)
pdb|2AJC|C Chain C, Porcine Dipeptidyl Peptidase Iv (Cd26) In Complex With
4-(2- Aminoethyl)-Benzene Sulphonyl Fluoride (Aebsf)
pdb|2AJC|D Chain D, Porcine Dipeptidyl Peptidase Iv (Cd26) In Complex With
4-(2- Aminoethyl)-Benzene Sulphonyl Fluoride (Aebsf)
pdb|2AJD|A Chain A, Porcine Dipeptidyl Peptidase Iv (Cd26) In Complex With
L-Pro-Boro-L- Pro (Boropro)
pdb|2AJD|B Chain B, Porcine Dipeptidyl Peptidase Iv (Cd26) In Complex With
L-Pro-Boro-L- Pro (Boropro)
pdb|2AJD|C Chain C, Porcine Dipeptidyl Peptidase Iv (Cd26) In Complex With
L-Pro-Boro-L- Pro (Boropro)
pdb|2AJD|D Chain D, Porcine Dipeptidyl Peptidase Iv (Cd26) In Complex With
L-Pro-Boro-L- Pro (Boropro)
Length = 728
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 64/263 (24%), Positives = 97/263 (36%), Gaps = 30/263 (11%)
Query: 491 GVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIF 550
G + LPP +D+SK PL +A P S+ R S + T I
Sbjct: 483 GTKFWYQMILPPHFDKSKKYPLLIEVYAGP---CSQKVDTVFRLSWATYLASTEN---II 536
Query: 551 LARRFAVLAGPSIPIIGEGDKLP---NDRFXXXXXXXXXXXXXXXXXXXXXDPSRIAVGG 607
+A +G +GDK+ N R D RIA+ G
Sbjct: 537 VASFDGRGSGY------QGDKIMHAINRRLGTFEVEDQIEATRQFSKMGFVDDKRIAIWG 590
Query: 608 HSYGAFMTAHLLAHAPHLFCCGIA-----RSGSYNKTLTP--FGFQTEFRTLWEATNVYI 660
SYG ++T+ +L +F CGIA + Y+ T G T L + Y
Sbjct: 591 WSYGGYVTSMVLGAGSGVFKCGIAVAPVSKWEYYDSVYTERYMGLPTPEDNL----DYYR 646
Query: 661 EMSPITHANKIKK-PILIIHGEVDDKVGLFPMQAERFFDALKGHGALSRLVLLPFEHHVY 719
+ ++ A K+ L+IHG DD V Q+ + AL G + + E H
Sbjct: 647 NSTVMSRAENFKQVEYLLIHGTADDNVHF--QQSAQLSKALVDAGVDFQTMWYTDEDHGI 704
Query: 720 AARENVMHVIWETDRWLQKYCLS 742
A+ H+ +L++ C S
Sbjct: 705 ASNMAHQHIYTHMSHFLKQ-CFS 726
>pdb|1N1M|A Chain A, Human Dipeptidyl Peptidase IvCD26 IN COMPLEX WITH AN
INHIBITOR
pdb|1N1M|B Chain B, Human Dipeptidyl Peptidase IvCD26 IN COMPLEX WITH AN
INHIBITOR
pdb|1NU6|A Chain A, Crystal Structure Of Human Dipeptidyl Peptidase Iv
(Dpp-Iv)
pdb|1NU6|B Chain B, Crystal Structure Of Human Dipeptidyl Peptidase Iv
(Dpp-Iv)
pdb|1NU8|A Chain A, Crystal Structure Of Human Dipeptidyl Peptidase Iv
(Dpp-Iv) In Complex With Diprotin A (Ili)
pdb|1NU8|B Chain B, Crystal Structure Of Human Dipeptidyl Peptidase Iv
(Dpp-Iv) In Complex With Diprotin A (Ili)
pdb|1TK3|A Chain A, Crystal Structure Of Human Apo Dipeptidyl Peptidase IvCD26
pdb|1TK3|B Chain B, Crystal Structure Of Human Apo Dipeptidyl Peptidase IvCD26
pdb|1TKR|A Chain A, Human Dipeptidyl Peptidase IvCD26 INHIBITED WITH
DIISOPROPYL Fluorophosphate
pdb|1TKR|B Chain B, Human Dipeptidyl Peptidase IvCD26 INHIBITED WITH
DIISOPROPYL Fluorophosphate
pdb|1W1I|A Chain A, Crystal Structure Of Dipeptidyl Peptidase Iv (Dppiv Or
Cd26) In Complex With Adenosine Deaminase
pdb|1W1I|B Chain B, Crystal Structure Of Dipeptidyl Peptidase Iv (Dppiv Or
Cd26) In Complex With Adenosine Deaminase
pdb|1W1I|C Chain C, Crystal Structure Of Dipeptidyl Peptidase Iv (Dppiv Or
Cd26) In Complex With Adenosine Deaminase
pdb|1W1I|D Chain D, Crystal Structure Of Dipeptidyl Peptidase Iv (Dppiv Or
Cd26) In Complex With Adenosine Deaminase
pdb|1RWQ|A Chain A, Human Dipeptidyl Peptidase Iv In Complex With
5-Aminomethyl-6-(2,4-
Dichloro-Phenyl)-2-(3,
5-Dimethoxy-Phenyl)-Pyrimidin-4-Ylamine
pdb|1RWQ|B Chain B, Human Dipeptidyl Peptidase Iv In Complex With
5-Aminomethyl-6-(2,4-
Dichloro-Phenyl)-2-(3,
5-Dimethoxy-Phenyl)-Pyrimidin-4-Ylamine
pdb|2BGN|A Chain A, Hiv-1 Tat Protein Derived N-Terminal Nonapeptide Trp2-Tat
(1-9) Bound To The Active Site Of Dipeptidyl Peptidase
Iv (Cd26)
pdb|2BGN|B Chain B, Hiv-1 Tat Protein Derived N-Terminal Nonapeptide Trp2-Tat
(1-9) Bound To The Active Site Of Dipeptidyl Peptidase
Iv (Cd26)
pdb|2BGN|C Chain C, Hiv-1 Tat Protein Derived N-Terminal Nonapeptide Trp2-Tat
(1-9) Bound To The Active Site Of Dipeptidyl Peptidase
Iv (Cd26)
pdb|2BGN|D Chain D, Hiv-1 Tat Protein Derived N-Terminal Nonapeptide Trp2-Tat
(1-9) Bound To The Active Site Of Dipeptidyl Peptidase
Iv (Cd26)
pdb|2AJL|I Chain I, X-Ray Structure Of Novel Biaryl-Based Dipeptidyl Peptidase
Iv Inhibitor
pdb|2AJL|J Chain J, X-Ray Structure Of Novel Biaryl-Based Dipeptidyl Peptidase
Iv Inhibitor
pdb|2BUB|A Chain A, Crystal Structure Of Human Dipeptidyl Peptidase Iv (Cd26)
In Complex With A Reversed Amide Inhibitor
pdb|2BUB|B Chain B, Crystal Structure Of Human Dipeptidyl Peptidase Iv (Cd26)
In Complex With A Reversed Amide Inhibitor
pdb|2OGZ|A Chain A, Crystal Structure Of Dpp-Iv Complexed With Lilly Aryl
Ketone Inhibitor
pdb|2OGZ|B Chain B, Crystal Structure Of Dpp-Iv Complexed With Lilly Aryl
Ketone Inhibitor
pdb|2OQI|A Chain A, Human Dipeptidyl Peptidase Iv (Dpp4) With Piperidinone-
Constrained Phenethylamine
pdb|2OQI|B Chain B, Human Dipeptidyl Peptidase Iv (Dpp4) With Piperidinone-
Constrained Phenethylamine
pdb|2OQI|C Chain C, Human Dipeptidyl Peptidase Iv (Dpp4) With Piperidinone-
Constrained Phenethylamine
pdb|2OQI|D Chain D, Human Dipeptidyl Peptidase Iv (Dpp4) With Piperidinone-
Constrained Phenethylamine
pdb|2OLE|A Chain A, Crystal Structure Of Human Dipeptidyl Peptidase Iv (Dppiv)
Complex With Cyclic Hydrazine Derivatives
pdb|2OLE|B Chain B, Crystal Structure Of Human Dipeptidyl Peptidase Iv (Dppiv)
Complex With Cyclic Hydrazine Derivatives
pdb|3BJM|A Chain A, Crystal Structure Of Human Dpp-Iv In Complex With (1s,3s,
5s)-2-[(2s)-
2-Amino-2-(3-Hydroxytricyclo[3.3.1.13,7]dec-1-
Yl)acetyl]-2- Azabicyclo[3.1.0]hexane-3-Carbonitrile
(Cas), (1s,3s,5s)-2-((2s)-2-
Amino-2-(3-Hydroxyadamantan-1-
Yl)acetyl)-2-Azabicyclo[3.1.0]hexane- 3-Carbonitrile
(Iupac), Or Bms-477118
pdb|3BJM|B Chain B, Crystal Structure Of Human Dpp-Iv In Complex With (1s,3s,
5s)-2-[(2s)-
2-Amino-2-(3-Hydroxytricyclo[3.3.1.13,7]dec-1-
Yl)acetyl]-2- Azabicyclo[3.1.0]hexane-3-Carbonitrile
(Cas), (1s,3s,5s)-2-((2s)-2-
Amino-2-(3-Hydroxyadamantan-1-
Yl)acetyl)-2-Azabicyclo[3.1.0]hexane- 3-Carbonitrile
(Iupac), Or Bms-477118
pdb|3EIO|A Chain A, Crystal Structure Analysis Of Dppiv Inhibitor
pdb|3EIO|B Chain B, Crystal Structure Analysis Of Dppiv Inhibitor
pdb|3H0C|A Chain A, Crystal Structure Of Human Dipeptidyl Peptidase Iv (Cd26)
In Complex With A Reversed Amide Inhibitor
pdb|3H0C|B Chain B, Crystal Structure Of Human Dipeptidyl Peptidase Iv (Cd26)
In Complex With A Reversed Amide Inhibitor
pdb|3KWF|A Chain A, Human Dpp-Iv With Carmegliptin
(S)-1-((2s,3s,11bs)-2-Amino-
9,10-Dimethoxy-1,3,4,6,7,11b-Hexahydro-2h-Pyrido[2,1-
A]isoquinolin-3-Yl)-4-Fluoromethyl-Pyrrolidin-2-One
pdb|3KWF|B Chain B, Human Dpp-Iv With Carmegliptin
(S)-1-((2s,3s,11bs)-2-Amino-
9,10-Dimethoxy-1,3,4,6,7,11b-Hexahydro-2h-Pyrido[2,1-
A]isoquinolin-3-Yl)-4-Fluoromethyl-Pyrrolidin-2-One
pdb|3OC0|A Chain A, Structure Of Human Dpp-Iv With Hts Hit
(2s,3s,11bs)-3-Butyl-9,10-
Dimethoxy-1,3,4,6,7,11b-Hexahydro-2h-Pyrido[2,
1-A]isoquinolin-2- Ylamine
pdb|3OC0|B Chain B, Structure Of Human Dpp-Iv With Hts Hit
(2s,3s,11bs)-3-Butyl-9,10-
Dimethoxy-1,3,4,6,7,11b-Hexahydro-2h-Pyrido[2,
1-A]isoquinolin-2- Ylamine
pdb|3KWJ|A Chain A, Strucutre Of Human Dpp-Iv With
(2s,3s,11bs)-3-(3-Fluoromethyl-Phenyl)-
9,10-Dimethoxy-1,3,4,6,7,11b-Hexahydro-2h-Pyrido[2,
1-A]isoquinolin-2- Ylamine
pdb|3KWJ|B Chain B, Strucutre Of Human Dpp-Iv With
(2s,3s,11bs)-3-(3-Fluoromethyl-Phenyl)-
9,10-Dimethoxy-1,3,4,6,7,11b-Hexahydro-2h-Pyrido[2,
1-A]isoquinolin-2- Ylamine
pdb|4DSA|A Chain A, Crystal Structure Of Dpp-iv With Compound C1
pdb|4DSA|B Chain B, Crystal Structure Of Dpp-iv With Compound C1
pdb|4DSZ|A Chain A, Crystal Structure Of Dpp-iv With Compound C2
pdb|4DSZ|B Chain B, Crystal Structure Of Dpp-iv With Compound C2
pdb|4DTC|A Chain A, Crystal Structure Of Dpp-iv With Compound C5
pdb|4DTC|B Chain B, Crystal Structure Of Dpp-iv With Compound C5
Length = 728
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 68/280 (24%), Positives = 108/280 (38%), Gaps = 35/280 (12%)
Query: 479 LQKEMIKYQRKDGVPLTAT-----LYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVR 533
LQ + ++ D + L T + LPP +D+SK PL +A P K+ D ++
Sbjct: 466 LQNVQMPSKKLDFIILNETKFWYQMILPPHFDKSKKYPLLLDVYAGPCSQKA-DTVFRL- 523
Query: 534 GSPNEFSGMTPTSSLIFLARRFAVLAGPSIPIIGEGDKLP---NDRFXXXXXXXXXXXXX 590
N + + T ++I A G +GDK+ N R
Sbjct: 524 ---NWATYLASTENIIV-----ASFDGRGSGY--QGDKIMHAINRRLGTFEVEDQIEAAR 573
Query: 591 XXXXXXXXDPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIA-----RSGSYNKTLTP--F 643
D RIA+ G SYG ++T+ +L +F CGIA R Y+ T
Sbjct: 574 QFSKMGFVDNKRIAIWGWSYGGYVTSMVLGSGSGVFKCGIAVAPVSRWEYYDSVYTERYM 633
Query: 644 GFQTEFRTLWEATNVYIEMSPITHANKIKK-PILIIHGEVDDKVGLFPMQAERFFDALKG 702
G T L + Y + ++ A K+ L+IHG DD V Q+ + AL
Sbjct: 634 GLPTPEDNL----DHYRNSTVMSRAENFKQVEYLLIHGTADDNVHF--QQSAQISKALVD 687
Query: 703 HGALSRLVLLPFEHHVYAARENVMHVIWETDRWLQKYCLS 742
G + + E H A+ H+ ++++ C S
Sbjct: 688 VGVDFQAMWYTDEDHGIASSTAHQHIYTHMSHFIKQ-CFS 726
>pdb|2RGU|A Chain A, Crystal Structure Of Complex Of Human Dpp4 And Inhibitor
pdb|2RGU|B Chain B, Crystal Structure Of Complex Of Human Dpp4 And Inhibitor
Length = 734
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 68/280 (24%), Positives = 108/280 (38%), Gaps = 35/280 (12%)
Query: 479 LQKEMIKYQRKDGVPLTAT-----LYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVR 533
LQ + ++ D + L T + LPP +D+SK PL +A P K+ D ++
Sbjct: 466 LQNVQMPSKKLDFIILNETKFWYQMILPPHFDKSKKYPLLLDVYAGPCSQKA-DTVFRL- 523
Query: 534 GSPNEFSGMTPTSSLIFLARRFAVLAGPSIPIIGEGDKLP---NDRFXXXXXXXXXXXXX 590
N + + T ++I A G +GDK+ N R
Sbjct: 524 ---NWATYLASTENIIV-----ASFDGRGSGY--QGDKIMHAINRRLGTFEVEDQIEAAR 573
Query: 591 XXXXXXXXDPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIA-----RSGSYNKTLTP--F 643
D RIA+ G SYG ++T+ +L +F CGIA R Y+ T
Sbjct: 574 QFSKMGFVDNKRIAIWGWSYGGYVTSMVLGSGSGVFKCGIAVAPVSRWEYYDSVYTERYM 633
Query: 644 GFQTEFRTLWEATNVYIEMSPITHANKIKK-PILIIHGEVDDKVGLFPMQAERFFDALKG 702
G T L + Y + ++ A K+ L+IHG DD V Q+ + AL
Sbjct: 634 GLPTPEDNL----DHYRNSTVMSRAENFKQVEYLLIHGTADDNVHF--QQSAQISKALVD 687
Query: 703 HGALSRLVLLPFEHHVYAARENVMHVIWETDRWLQKYCLS 742
G + + E H A+ H+ ++++ C S
Sbjct: 688 VGVDFQAMWYTDEDHGIASSTAHQHIYTHMSHFIKQ-CFS 726
>pdb|3Q8W|A Chain A, A B-Aminoacyl Containing Thiazolidine Derivative And Dppiv
Complex
pdb|3Q8W|B Chain B, A B-Aminoacyl Containing Thiazolidine Derivative And Dppiv
Complex
Length = 732
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 68/280 (24%), Positives = 108/280 (38%), Gaps = 35/280 (12%)
Query: 479 LQKEMIKYQRKDGVPLTAT-----LYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVR 533
LQ + ++ D + L T + LPP +D+SK PL +A P K+ D ++
Sbjct: 466 LQNVQMPSKKLDFIILNETKFWYQMILPPHFDKSKKYPLLLDVYAGPCSQKA-DTVFRL- 523
Query: 534 GSPNEFSGMTPTSSLIFLARRFAVLAGPSIPIIGEGDKLP---NDRFXXXXXXXXXXXXX 590
N + + T ++I A G +GDK+ N R
Sbjct: 524 ---NWATYLASTENIIV-----ASFDGRGSGY--QGDKIMHAINRRLGTFEVEDQIEAAR 573
Query: 591 XXXXXXXXDPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIA-----RSGSYNKTLTP--F 643
D RIA+ G SYG ++T+ +L +F CGIA R Y+ T
Sbjct: 574 QFSKMGFVDNKRIAIWGWSYGGYVTSMVLGSGSGVFKCGIAVAPVSRWEYYDSVYTERYM 633
Query: 644 GFQTEFRTLWEATNVYIEMSPITHANKIKK-PILIIHGEVDDKVGLFPMQAERFFDALKG 702
G T L + Y + ++ A K+ L+IHG DD V Q+ + AL
Sbjct: 634 GLPTPEDNL----DHYRNSTVMSRAENFKQVEYLLIHGTADDNVHF--QQSAQISKALVD 687
Query: 703 HGALSRLVLLPFEHHVYAARENVMHVIWETDRWLQKYCLS 742
G + + E H A+ H+ ++++ C S
Sbjct: 688 VGVDFQAMWYTDEDHGIASSTAHQHIYTHMSHFIKQ-CFS 726
>pdb|2G5P|A Chain A, Crystal Structure Of Human Dipeptidyl Peptidase Iv (Dppiv)
Complexed With Cyanopyrrolidine (C5-Pro-Pro) Inhibitor
21ac
pdb|2G5P|B Chain B, Crystal Structure Of Human Dipeptidyl Peptidase Iv (Dppiv)
Complexed With Cyanopyrrolidine (C5-Pro-Pro) Inhibitor
21ac
pdb|2G5T|A Chain A, Crystal Structure Of Human Dipeptidyl Peptidase Iv (Dppiv)
Complexed With Cyanopyrrolidine (C5-Pro-Pro) Inhibitor
21ag
pdb|2G5T|B Chain B, Crystal Structure Of Human Dipeptidyl Peptidase Iv (Dppiv)
Complexed With Cyanopyrrolidine (C5-Pro-Pro) Inhibitor
21ag
pdb|2G63|A Chain A, Crystal Structure Of Human Dipeptidyl Peptidase Iv (Dppiv)
Complexed With Cyanopyrrolidine (C5-Pro-Pro) Inhibitor
24b
pdb|2G63|B Chain B, Crystal Structure Of Human Dipeptidyl Peptidase Iv (Dppiv)
Complexed With Cyanopyrrolidine (C5-Pro-Pro) Inhibitor
24b
pdb|2G63|C Chain C, Crystal Structure Of Human Dipeptidyl Peptidase Iv (Dppiv)
Complexed With Cyanopyrrolidine (C5-Pro-Pro) Inhibitor
24b
pdb|2G63|D Chain D, Crystal Structure Of Human Dipeptidyl Peptidase Iv (Dppiv)
Complexed With Cyanopyrrolidine (C5-Pro-Pro) Inhibitor
24b
pdb|2I03|A Chain A, Crystal Structure Of Human Dipeptidyl Peptidase 4 (Dpp Iv)
With Potent Alkynyl Cyanopyrrolidine (Abt-279)
pdb|2I03|B Chain B, Crystal Structure Of Human Dipeptidyl Peptidase 4 (Dpp Iv)
With Potent Alkynyl Cyanopyrrolidine (Abt-279)
pdb|2I03|C Chain C, Crystal Structure Of Human Dipeptidyl Peptidase 4 (Dpp Iv)
With Potent Alkynyl Cyanopyrrolidine (Abt-279)
pdb|2I03|D Chain D, Crystal Structure Of Human Dipeptidyl Peptidase 4 (Dpp Iv)
With Potent Alkynyl Cyanopyrrolidine (Abt-279)
pdb|2OQV|A Chain A, Human Dipeptidyl Peptidase Iv (Dpp4) With Piperidine-
Constrained Phenethylamine
pdb|2OQV|B Chain B, Human Dipeptidyl Peptidase Iv (Dpp4) With Piperidine-
Constrained Phenethylamine
pdb|2I78|A Chain A, Crystal Structure Of Human Dipeptidyl Peptidase Iv (Dpp
Iv) Complexed With Abt-341, A Cyclohexene-Constrained
Phenethylamine Inhibitor
pdb|2I78|B Chain B, Crystal Structure Of Human Dipeptidyl Peptidase Iv (Dpp
Iv) Complexed With Abt-341, A Cyclohexene-Constrained
Phenethylamine Inhibitor
pdb|2I78|C Chain C, Crystal Structure Of Human Dipeptidyl Peptidase Iv (Dpp
Iv) Complexed With Abt-341, A Cyclohexene-Constrained
Phenethylamine Inhibitor
pdb|2I78|D Chain D, Crystal Structure Of Human Dipeptidyl Peptidase Iv (Dpp
Iv) Complexed With Abt-341, A Cyclohexene-Constrained
Phenethylamine Inhibitor
pdb|2OAG|A Chain A, Crystal Structure Of Human Dipeptidyl Peptidase Iv (Dppiv)
With Pyrrolidine-Constrained Phenethylamine 29g
pdb|2OAG|B Chain B, Crystal Structure Of Human Dipeptidyl Peptidase Iv (Dppiv)
With Pyrrolidine-Constrained Phenethylamine 29g
pdb|2OAG|C Chain C, Crystal Structure Of Human Dipeptidyl Peptidase Iv (Dppiv)
With Pyrrolidine-Constrained Phenethylamine 29g
pdb|2OAG|D Chain D, Crystal Structure Of Human Dipeptidyl Peptidase Iv (Dppiv)
With Pyrrolidine-Constrained Phenethylamine 29g
Length = 726
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 68/280 (24%), Positives = 108/280 (38%), Gaps = 35/280 (12%)
Query: 479 LQKEMIKYQRKDGVPLTAT-----LYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVR 533
LQ + ++ D + L T + LPP +D+SK PL +A P K+ D ++
Sbjct: 466 LQNVQMPSKKLDFIILNETKFWYQMILPPHFDKSKKYPLLLDVYAGPCSQKA-DTVFRL- 523
Query: 534 GSPNEFSGMTPTSSLIFLARRFAVLAGPSIPIIGEGDKLP---NDRFXXXXXXXXXXXXX 590
N + + T ++I A G +GDK+ N R
Sbjct: 524 ---NWATYLASTENIIV-----ASFDGRGSGY--QGDKIMHAINRRLGTFEVEDQIEAAR 573
Query: 591 XXXXXXXXDPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIA-----RSGSYNKTLTP--F 643
D RIA+ G SYG ++T+ +L +F CGIA R Y+ T
Sbjct: 574 QFSKMGFVDNKRIAIWGWSYGGYVTSMVLGSGSGVFKCGIAVAPVSRWEYYDSVYTERYM 633
Query: 644 GFQTEFRTLWEATNVYIEMSPITHANKIKK-PILIIHGEVDDKVGLFPMQAERFFDALKG 702
G T L + Y + ++ A K+ L+IHG DD V Q+ + AL
Sbjct: 634 GLPTPEDNL----DHYRNSTVMSRAENFKQVEYLLIHGTADDNVHF--QQSAQISKALVD 687
Query: 703 HGALSRLVLLPFEHHVYAARENVMHVIWETDRWLQKYCLS 742
G + + E H A+ H+ ++++ C S
Sbjct: 688 VGVDFQAMWYTDEDHGIASSTAHQHIYTHMSHFIKQ-CFS 726
>pdb|2BGR|A Chain A, Crystal Structure Of Hiv-1 Tat Derived Nonapeptides
Tat(1-9) Bound To The Active Site Of Dipeptidyl
Peptidase Iv (Cd26)
pdb|2BGR|B Chain B, Crystal Structure Of Hiv-1 Tat Derived Nonapeptides
Tat(1-9) Bound To The Active Site Of Dipeptidyl
Peptidase Iv (Cd26)
Length = 738
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 68/280 (24%), Positives = 108/280 (38%), Gaps = 35/280 (12%)
Query: 479 LQKEMIKYQRKDGVPLTAT-----LYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVR 533
LQ + ++ D + L T + LPP +D+SK PL +A P K+ D ++
Sbjct: 476 LQNVQMPSKKLDFIILNETKFWYQMILPPHFDKSKKYPLLLDVYAGPCSQKA-DTVFRL- 533
Query: 534 GSPNEFSGMTPTSSLIFLARRFAVLAGPSIPIIGEGDKLP---NDRFXXXXXXXXXXXXX 590
N + + T ++I A G +GDK+ N R
Sbjct: 534 ---NWATYLASTENIIV-----ASFDGRGSGY--QGDKIMHAINRRLGTFEVEDQIEAAR 583
Query: 591 XXXXXXXXDPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIA-----RSGSYNKTLTP--F 643
D RIA+ G SYG ++T+ +L +F CGIA R Y+ T
Sbjct: 584 QFSKMGFVDNKRIAIWGWSYGGYVTSMVLGSGSGVFKCGIAVAPVSRWEYYDSVYTERYM 643
Query: 644 GFQTEFRTLWEATNVYIEMSPITHANKIKK-PILIIHGEVDDKVGLFPMQAERFFDALKG 702
G T L + Y + ++ A K+ L+IHG DD V Q+ + AL
Sbjct: 644 GLPTPEDNL----DHYRNSTVMSRAENFKQVEYLLIHGTADDNVHF--QQSAQISKALVD 697
Query: 703 HGALSRLVLLPFEHHVYAARENVMHVIWETDRWLQKYCLS 742
G + + E H A+ H+ ++++ C S
Sbjct: 698 VGVDFQAMWYTDEDHGIASSTAHQHIYTHMSHFIKQ-CFS 736
>pdb|4A5S|A Chain A, Crystal Structure Of Human Dpp4 In Complex With A Noval
Heterocyclic Dpp4 Inhibitor
pdb|4A5S|B Chain B, Crystal Structure Of Human Dpp4 In Complex With A Noval
Heterocyclic Dpp4 Inhibitor
Length = 740
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 68/280 (24%), Positives = 108/280 (38%), Gaps = 35/280 (12%)
Query: 479 LQKEMIKYQRKDGVPLTAT-----LYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVR 533
LQ + ++ D + L T + LPP +D+SK PL +A P K+ D ++
Sbjct: 466 LQNVQMPSKKLDFIILNETKFWYQMILPPHFDKSKKYPLLLDVYAGPCSQKA-DTVFRL- 523
Query: 534 GSPNEFSGMTPTSSLIFLARRFAVLAGPSIPIIGEGDKLP---NDRFXXXXXXXXXXXXX 590
N + + T ++I A G +GDK+ N R
Sbjct: 524 ---NWATYLASTENIIV-----ASFDGRGSGY--QGDKIMHAINRRLGTFEVEDQIEAAR 573
Query: 591 XXXXXXXXDPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIA-----RSGSYNKTLTP--F 643
D RIA+ G SYG ++T+ +L +F CGIA R Y+ T
Sbjct: 574 QFSKMGFVDNKRIAIWGWSYGGYVTSMVLGSGSGVFKCGIAVAPVSRWEYYDSVYTERYM 633
Query: 644 GFQTEFRTLWEATNVYIEMSPITHANKIKK-PILIIHGEVDDKVGLFPMQAERFFDALKG 702
G T L + Y + ++ A K+ L+IHG DD V Q+ + AL
Sbjct: 634 GLPTPEDNL----DHYRNSTVMSRAENFKQVEYLLIHGTADDNVHF--QQSAQISKALVD 687
Query: 703 HGALSRLVLLPFEHHVYAARENVMHVIWETDRWLQKYCLS 742
G + + E H A+ H+ ++++ C S
Sbjct: 688 VGVDFQAMWYTDEDHGIASSTAHQHIYTHMSHFIKQ-CFS 726
>pdb|2JID|A Chain A, Human Dipeptidyl Peptidase Iv In Complex With 1-(3,4-
Dimethoxy-Phenyl)-3-M-Tolyl-Piperidine-4-Ylamine
pdb|2JID|B Chain B, Human Dipeptidyl Peptidase Iv In Complex With 1-(3,4-
Dimethoxy-Phenyl)-3-M-Tolyl-Piperidine-4-Ylamine
Length = 736
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 68/280 (24%), Positives = 108/280 (38%), Gaps = 35/280 (12%)
Query: 479 LQKEMIKYQRKDGVPLTAT-----LYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVR 533
LQ + ++ D + L T + LPP +D+SK PL +A P K+ D ++
Sbjct: 474 LQNVQMPSKKLDFIILNETKFWYQMILPPHFDKSKKYPLLLDVYAGPCSQKA-DTVFRL- 531
Query: 534 GSPNEFSGMTPTSSLIFLARRFAVLAGPSIPIIGEGDKLP---NDRFXXXXXXXXXXXXX 590
N + + T ++I A G +GDK+ N R
Sbjct: 532 ---NWATYLASTENIIV-----ASFDGRGSGY--QGDKIMHAINRRLGTFEVEDQIEAAR 581
Query: 591 XXXXXXXXDPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIA-----RSGSYNKTLTP--F 643
D RIA+ G SYG ++T+ +L +F CGIA R Y+ T
Sbjct: 582 QFSKMGFVDNKRIAIWGWSYGGYVTSMVLGSGSGVFKCGIAVAPVSRWEYYDSVYTERYM 641
Query: 644 GFQTEFRTLWEATNVYIEMSPITHANKIKK-PILIIHGEVDDKVGLFPMQAERFFDALKG 702
G T L + Y + ++ A K+ L+IHG DD V Q+ + AL
Sbjct: 642 GLPTPEDNL----DHYRNSTVMSRAENFKQVEYLLIHGTADDNVHF--QQSAQISKALVD 695
Query: 703 HGALSRLVLLPFEHHVYAARENVMHVIWETDRWLQKYCLS 742
G + + E H A+ H+ ++++ C S
Sbjct: 696 VGVDFQAMWYTDEDHGIASSTAHQHIYTHMSHFIKQ-CFS 734
>pdb|2ONC|A Chain A, Crystal Structure Of Human Dpp-4
pdb|2ONC|B Chain B, Crystal Structure Of Human Dpp-4
pdb|2ONC|C Chain C, Crystal Structure Of Human Dpp-4
pdb|2ONC|D Chain D, Crystal Structure Of Human Dpp-4
Length = 731
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 68/280 (24%), Positives = 108/280 (38%), Gaps = 35/280 (12%)
Query: 479 LQKEMIKYQRKDGVPLTAT-----LYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVR 533
LQ + ++ D + L T + LPP +D+SK PL +A P K+ D ++
Sbjct: 469 LQNVQMPSKKLDFIILNETKFWYQMILPPHFDKSKKYPLLLDVYAGPCSQKA-DTVFRL- 526
Query: 534 GSPNEFSGMTPTSSLIFLARRFAVLAGPSIPIIGEGDKLP---NDRFXXXXXXXXXXXXX 590
N + + T ++I A G +GDK+ N R
Sbjct: 527 ---NWATYLASTENIIV-----ASFDGRGSGY--QGDKIMHAINRRLGTFEVEDQIEAAR 576
Query: 591 XXXXXXXXDPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIA-----RSGSYNKTLTP--F 643
D RIA+ G SYG ++T+ +L +F CGIA R Y+ T
Sbjct: 577 QFSKMGFVDNKRIAIWGWSYGGYVTSMVLGSGSGVFKCGIAVAPVSRWEYYDSVYTERYM 636
Query: 644 GFQTEFRTLWEATNVYIEMSPITHANKIKK-PILIIHGEVDDKVGLFPMQAERFFDALKG 702
G T L + Y + ++ A K+ L+IHG DD V Q+ + AL
Sbjct: 637 GLPTPEDNL----DHYRNSTVMSRAENFKQVEYLLIHGTADDNVHF--QQSAQISKALVD 690
Query: 703 HGALSRLVLLPFEHHVYAARENVMHVIWETDRWLQKYCLS 742
G + + E H A+ H+ ++++ C S
Sbjct: 691 VGVDFQAMWYTDEDHGIASSTAHQHIYTHMSHFIKQ-CFS 729
>pdb|1R9M|A Chain A, Crystal Structure Of Human Dipeptidyl Peptidase Iv At 2.1
Ang. Resolution.
pdb|1R9M|B Chain B, Crystal Structure Of Human Dipeptidyl Peptidase Iv At 2.1
Ang. Resolution.
pdb|1R9M|C Chain C, Crystal Structure Of Human Dipeptidyl Peptidase Iv At 2.1
Ang. Resolution.
pdb|1R9M|D Chain D, Crystal Structure Of Human Dipeptidyl Peptidase Iv At 2.1
Ang. Resolution
Length = 733
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 68/280 (24%), Positives = 108/280 (38%), Gaps = 35/280 (12%)
Query: 479 LQKEMIKYQRKDGVPLTAT-----LYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVR 533
LQ + ++ D + L T + LPP +D+SK PL +A P K+ D ++
Sbjct: 471 LQNVQMPSKKLDFIILNETKFWYQMILPPHFDKSKKYPLLLDVYAGPCSQKA-DTVFRL- 528
Query: 534 GSPNEFSGMTPTSSLIFLARRFAVLAGPSIPIIGEGDKLP---NDRFXXXXXXXXXXXXX 590
N + + T ++I A G +GDK+ N R
Sbjct: 529 ---NWATYLASTENIIV-----ASFDGRGSGY--QGDKIMHAINRRLGTFEVEDQIEAAR 578
Query: 591 XXXXXXXXDPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIA-----RSGSYNKTLTP--F 643
D RIA+ G SYG ++T+ +L +F CGIA R Y+ T
Sbjct: 579 QFSKMGFVDNKRIAIWGWSYGGYVTSMVLGSGSGVFKCGIAVAPVSRWEYYDSVYTERYM 638
Query: 644 GFQTEFRTLWEATNVYIEMSPITHANKIKK-PILIIHGEVDDKVGLFPMQAERFFDALKG 702
G T L + Y + ++ A K+ L+IHG DD V Q+ + AL
Sbjct: 639 GLPTPEDNL----DHYRNSTVMSRAENFKQVEYLLIHGTADDNVHF--QQSAQISKALVD 692
Query: 703 HGALSRLVLLPFEHHVYAARENVMHVIWETDRWLQKYCLS 742
G + + E H A+ H+ ++++ C S
Sbjct: 693 VGVDFQAMWYTDEDHGIASSTAHQHIYTHMSHFIKQ-CFS 731
>pdb|1U8E|A Chain A, Human Dipeptidyl Peptidase IvCD26 MUTANT Y547F
pdb|1U8E|B Chain B, Human Dipeptidyl Peptidase IvCD26 MUTANT Y547F
Length = 728
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 68/280 (24%), Positives = 108/280 (38%), Gaps = 35/280 (12%)
Query: 479 LQKEMIKYQRKDGVPLTAT-----LYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVR 533
LQ + ++ D + L T + LPP +D+SK PL +A P K+ D ++
Sbjct: 466 LQNVQMPSKKLDFIILNETKFWYQMILPPHFDKSKKYPLLLDVFAGPCSQKA-DTVFRL- 523
Query: 534 GSPNEFSGMTPTSSLIFLARRFAVLAGPSIPIIGEGDKLP---NDRFXXXXXXXXXXXXX 590
N + + T ++I A G +GDK+ N R
Sbjct: 524 ---NWATYLASTENIIV-----ASFDGRGSGY--QGDKIMHAINRRLGTFEVEDQIEAAR 573
Query: 591 XXXXXXXXDPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIA-----RSGSYNKTLTP--F 643
D RIA+ G SYG ++T+ +L +F CGIA R Y+ T
Sbjct: 574 QFSKMGFVDNKRIAIWGWSYGGYVTSMVLGSGSGVFKCGIAVAPVSRWEYYDSVYTERYM 633
Query: 644 GFQTEFRTLWEATNVYIEMSPITHANKIKK-PILIIHGEVDDKVGLFPMQAERFFDALKG 702
G T L + Y + ++ A K+ L+IHG DD V Q+ + AL
Sbjct: 634 GLPTPEDNL----DHYRNSTVMSRAENFKQVEYLLIHGTADDNVHF--QQSAQISKALVD 687
Query: 703 HGALSRLVLLPFEHHVYAARENVMHVIWETDRWLQKYCLS 742
G + + E H A+ H+ ++++ C S
Sbjct: 688 VGVDFQAMWYTDEDHGIASSTAHQHIYTHMSHFIKQ-CFS 726
>pdb|1Z68|A Chain A, Crystal Structure Of Human Fibroblast Activation Protein
Alpha
pdb|1Z68|B Chain B, Crystal Structure Of Human Fibroblast Activation Protein
Alpha
Length = 719
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 43/165 (26%), Positives = 59/165 (35%), Gaps = 33/165 (20%)
Query: 479 LQKEMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNE 538
L KE IK D + L + LPP +D+SK PL QV G P
Sbjct: 465 LPKEEIKKLEVDEITLWYKMILPPQFDRSKKYPLLI----------------QVYGGP-- 506
Query: 539 FSGMTPTSSLIFLARRFAVLAGPSIPIIG---------EGDKL---PNDRFXXXXXXXXX 586
+ + +F + LA +I +GDKL +
Sbjct: 507 ---CSQSVRSVFAVNWISYLASKEGMVIALVDGRGTAFQGDKLLYAVYRKLGVYEVEDQI 563
Query: 587 XXXXXXXXXXXXDPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIA 631
D RIA+ G SYG ++++ LA LF CGIA
Sbjct: 564 TAVRKFIEMGFIDEKRIAIWGWSYGGYVSSLALASGTGLFKCGIA 608
>pdb|2GOP|A Chain A, The Beta-Propeller Domain Of The Trilobed Protease From
Pyrococcus Furiosus Reveals An Open Velcro Topology
pdb|2GOP|B Chain B, The Beta-Propeller Domain Of The Trilobed Protease From
Pyrococcus Furiosus Reveals An Open Velcro Topology
Length = 347
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 38/73 (52%), Gaps = 11/73 (15%)
Query: 39 SPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNS 98
SPDGK+IAF +R +EE VS +W+AD ET +K + E+ +I S W +S
Sbjct: 67 SPDGKKIAF-MRANEEKKVSE----IWVADLETLSSKKILEAKNIR------SLEWNEDS 115
Query: 99 TLLIFTIPSSRRD 111
L+ R D
Sbjct: 116 RKLLIVGFKRRED 128
>pdb|3AZO|A Chain A, Crystal Structure Of Puromycin Hydrolase
pdb|3AZO|B Chain B, Crystal Structure Of Puromycin Hydrolase
Length = 662
Score = 39.7 bits (91), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 33/140 (23%), Positives = 61/140 (43%), Gaps = 12/140 (8%)
Query: 599 DPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGSYNKTLTPFGFQTEFRTLW----- 653
D +R+AV G S G + A L ++ CG + G +F + +
Sbjct: 501 DRARLAVRGGSAGGWTAASSLVST-DVYACGTVLYPVLDLLGWADGGTHDFESRYLDFLI 559
Query: 654 ----EATNVYIEMSPITHANKIKKPILIIHGEVDDKVGLFPMQAERFFDALKGHGALSRL 709
E Y + +P+T A++++ P L++ G ++D V P Q +RF +A+ G G
Sbjct: 560 GSFEEFPERYRDRAPLTRADRVRVPFLLLQG-LEDPV-CPPEQCDRFLEAVAGCGVPHAY 617
Query: 710 VLLPFEHHVYAARENVMHVI 729
+ E H + +E + +
Sbjct: 618 LSFEGEGHGFRRKETXVRAL 637
>pdb|2Z3W|A Chain A, Prolyl Tripeptidyl Aminopeptidase Mutant E636a
pdb|2Z3Z|A Chain A, Prolyl Tripeptidyl Aminopeptidase Mutant E636a Complexd
With An Inhibitor
Length = 706
Score = 39.3 bits (90), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 41/87 (47%), Gaps = 3/87 (3%)
Query: 599 DPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSG--SYNKTLTPFGFQTEFRTLWEAT 656
D RI V G SYG FMT +L+ +F G+A +N+ +G + F E
Sbjct: 567 DADRIGVHGWSYGGFMTTNLMLTHGDVFKVGVAGGPVIDWNRYAIMYG-ERYFDAPQENP 625
Query: 657 NVYIEMSPITHANKIKKPILIIHGEVD 683
Y + + A +K +++IHG +D
Sbjct: 626 EGYDAANLLKRAGDLKGRLMLIHGAID 652
>pdb|2D5L|A Chain A, Crystal Structure Of Prolyl Tripeptidyl Aminopeptidase
From Porphyromonas Gingivalis
pdb|2EEP|A Chain A, Prolyl Tripeptidyl Aminopeptidase Complexed With An
Inhibitor
Length = 706
Score = 38.5 bits (88), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 41/87 (47%), Gaps = 3/87 (3%)
Query: 599 DPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSG--SYNKTLTPFGFQTEFRTLWEAT 656
D RI V G SYG FMT +L+ +F G+A +N+ +G + F E
Sbjct: 567 DADRIGVHGWSYGGFMTTNLMLTHGDVFKVGVAGGPVIDWNRYEIMYG-ERYFDAPQENP 625
Query: 657 NVYIEMSPITHANKIKKPILIIHGEVD 683
Y + + A +K +++IHG +D
Sbjct: 626 EGYDAANLLKRAGDLKGRLMLIHGAID 652
>pdb|3AZP|A Chain A, Crystal Structure Of Puromycin Hydrolase S511a Mutant
pdb|3AZP|B Chain B, Crystal Structure Of Puromycin Hydrolase S511a Mutant
pdb|3AZQ|A Chain A, Crystal Structure Of Puromycin Hydrolase S511a Mutant
Complexed With Pgg
pdb|3AZQ|B Chain B, Crystal Structure Of Puromycin Hydrolase S511a Mutant
Complexed With Pgg
Length = 662
Score = 37.7 bits (86), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 39/71 (54%), Gaps = 2/71 (2%)
Query: 659 YIEMSPITHANKIKKPILIIHGEVDDKVGLFPMQAERFFDALKGHGALSRLVLLPFEHHV 718
Y + +P+T A++++ P L++ G ++D V P Q +RF +A+ G G + E H
Sbjct: 569 YRDRAPLTRADRVRVPFLLLQG-LEDPV-CPPEQCDRFLEAVAGCGVPHAYLSFEGEGHG 626
Query: 719 YAARENVMHVI 729
+ +E ++ +
Sbjct: 627 FRRKETMVRAL 637
>pdb|2DCM|A Chain A, The Crystal Structure Of S603a Mutated Prolyl Tripeptidyl
Aminopeptidase Complexed With Substrate
Length = 706
Score = 37.7 bits (86), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 41/87 (47%), Gaps = 3/87 (3%)
Query: 599 DPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSG--SYNKTLTPFGFQTEFRTLWEAT 656
D RI V G +YG FMT +L+ +F G+A +N+ +G + F E
Sbjct: 567 DADRIGVHGWAYGGFMTTNLMLTHGDVFKVGVAGGPVIDWNRYEIMYG-ERYFDAPQENP 625
Query: 657 NVYIEMSPITHANKIKKPILIIHGEVD 683
Y + + A +K +++IHG +D
Sbjct: 626 EGYDAANLLKRAGDLKGRLMLIHGAID 652
>pdb|2B20|A Chain A, Crystal Structure Of Enterochelin Esterase From Shigella
Flexneri Enterochelin Esterase
pdb|3C87|A Chain A, Crystal Structure Of The Enterobactin Esterase Fes From
Shigella Flexneri In The Presence Of Enterobactin
pdb|3C87|B Chain B, Crystal Structure Of The Enterobactin Esterase Fes From
Shigella Flexneri In The Presence Of Enterobactin
pdb|3C8H|A Chain A, Crystal Structure Of The Enterobactin Esterase Fes From
Shigella Flexneri In The Presence Of 2,3-Di-Hydroxy-N-
Benzoyl-Serine
pdb|3C8H|B Chain B, Crystal Structure Of The Enterobactin Esterase Fes From
Shigella Flexneri In The Presence Of 2,3-Di-Hydroxy-N-
Benzoyl-Serine
pdb|3C8H|C Chain C, Crystal Structure Of The Enterobactin Esterase Fes From
Shigella Flexneri In The Presence Of 2,3-Di-Hydroxy-N-
Benzoyl-Serine
pdb|3C8H|D Chain D, Crystal Structure Of The Enterobactin Esterase Fes From
Shigella Flexneri In The Presence Of 2,3-Di-Hydroxy-N-
Benzoyl-Serine
Length = 403
Score = 31.6 bits (70), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 13/35 (37%), Positives = 18/35 (51%)
Query: 602 RIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGSY 636
R V G S+G + H P F C +++SGSY
Sbjct: 277 RTVVAGQSFGGLSALYAGLHWPERFGCVLSQSGSY 311
>pdb|3C8D|A Chain A, Crystal Structure Of The Enterobactin Esterase Fes From
Shigella Flexneri In The Presence Of 2,3-Di-Hydroxy-N-
Benzoyl-Glycine
pdb|3C8D|B Chain B, Crystal Structure Of The Enterobactin Esterase Fes From
Shigella Flexneri In The Presence Of 2,3-Di-Hydroxy-N-
Benzoyl-Glycine
pdb|3C8D|C Chain C, Crystal Structure Of The Enterobactin Esterase Fes From
Shigella Flexneri In The Presence Of 2,3-Di-Hydroxy-N-
Benzoyl-Glycine
pdb|3C8D|D Chain D, Crystal Structure Of The Enterobactin Esterase Fes From
Shigella Flexneri In The Presence Of 2,3-Di-Hydroxy-N-
Benzoyl-Glycine
Length = 403
Score = 31.6 bits (70), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 13/35 (37%), Positives = 18/35 (51%)
Query: 602 RIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGSY 636
R V G S+G + H P F C +++SGSY
Sbjct: 277 RTVVAGQSFGGLSALYAGLHWPERFGCVLSQSGSY 311
>pdb|2O1X|A Chain A, 1-deoxy-d-xylulose 5-phosphate Synthase (dxs) From
Deinococcus Radiodurans
pdb|2O1X|B Chain B, 1-deoxy-d-xylulose 5-phosphate Synthase (dxs) From
Deinococcus Radiodurans
pdb|2O1X|C Chain C, 1-deoxy-d-xylulose 5-phosphate Synthase (dxs) From
Deinococcus Radiodurans
pdb|2O1X|D Chain D, 1-deoxy-d-xylulose 5-phosphate Synthase (dxs) From
Deinococcus Radiodurans
Length = 629
Score = 30.4 bits (67), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 32/104 (30%), Positives = 46/104 (44%), Gaps = 13/104 (12%)
Query: 252 DKPSTLYWVEAQDRGDANVEVSPRDIIYTQPA--EPAEGEKPEILHKLDLRFSVSWCDDS 309
D P+ L+ V + +G + E P I + PA +PA GE + SW
Sbjct: 278 DGPTILHIVTTKGKGLSYAEADP--IYWHGPAKFDPATGEYVP-------SSAYSWSAAF 328
Query: 310 LALVNETWYKTSQTRTWLVCPGSKDVAPRVLFDRVFENVYSDPG 353
V E W KT RT++V P ++ + V F RV + Y D G
Sbjct: 329 GEAVTE-WAKT-DPRTFVVTPAMREGSGLVEFSRVHPHRYLDVG 370
>pdb|3J1Q|A Chain A, Structure Of Aav-Dj, A Retargeted Gene Therapy Vector:
Cryo-Electron Microscopy At 4.5a Resolution
Length = 737
Score = 28.9 bits (63), Expect = 10.0, Method: Compositional matrix adjust.
Identities = 19/72 (26%), Positives = 36/72 (50%), Gaps = 7/72 (9%)
Query: 401 INTGSKERIWESNREKYFETAVALVFG-QGEEDINLNQLKILTSKESKTEIT------QY 453
+N G + + EK+F + L+FG QG E N++ K++ + E + T QY
Sbjct: 519 VNPGPAMASHKDDEEKFFPQSGVLIFGKQGSEKTNVDIEKVMITDEEEIRTTNPVATEQY 578
Query: 454 HILSWPLKKSSQ 465
+S L++ ++
Sbjct: 579 GSVSTNLQRGNR 590
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.136 0.422
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 24,454,053
Number of Sequences: 62578
Number of extensions: 1067890
Number of successful extensions: 2611
Number of sequences better than 100.0: 47
Number of HSP's better than 100.0 without gapping: 34
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 2539
Number of HSP's gapped (non-prelim): 75
length of query: 751
length of database: 14,973,337
effective HSP length: 106
effective length of query: 645
effective length of database: 8,340,069
effective search space: 5379344505
effective search space used: 5379344505
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)