Query 004475
Match_columns 751
No_of_seqs 360 out of 3847
Neff 10.5
Searched_HMMs 46136
Date Fri Mar 29 00:01:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004475.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/004475hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG1506 DAP2 Dipeptidyl aminop 100.0 7.7E-42 1.7E-46 377.2 50.5 573 32-742 14-619 (620)
2 PRK10115 protease 2; Provision 100.0 5.8E-38 1.3E-42 347.6 57.9 566 40-742 79-678 (686)
3 KOG2100 Dipeptidyl aminopeptid 100.0 2.8E-27 6.1E-32 262.5 47.2 393 303-742 345-750 (755)
4 KOG2281 Dipeptidyl aminopeptid 100.0 7.9E-28 1.7E-32 242.3 35.3 323 391-738 527-866 (867)
5 COG1770 PtrB Protease II [Amin 100.0 1.4E-24 3.1E-29 222.9 52.0 548 39-719 82-657 (682)
6 PRK01029 tolB translocation pr 99.9 4.5E-25 9.8E-30 233.1 25.4 251 3-363 163-426 (428)
7 PF00326 Peptidase_S9: Prolyl 99.9 3.1E-26 6.7E-31 221.1 15.1 196 545-742 5-212 (213)
8 PRK01029 tolB translocation pr 99.9 1.3E-24 2.9E-29 229.6 28.5 265 34-413 140-414 (428)
9 PRK03629 tolB translocation pr 99.9 2.1E-24 4.5E-29 229.4 26.0 235 3-341 177-414 (429)
10 PRK05137 tolB translocation pr 99.9 2.4E-24 5.1E-29 230.8 24.9 235 4-341 181-420 (435)
11 PRK04043 tolB translocation pr 99.9 4.5E-24 9.8E-29 223.5 24.7 231 4-333 168-402 (419)
12 PRK03629 tolB translocation pr 99.9 1.9E-23 4.2E-28 222.0 28.7 249 43-411 164-415 (429)
13 PRK05137 tolB translocation pr 99.9 2.5E-23 5.4E-28 222.8 28.9 253 42-410 165-420 (435)
14 PRK04043 tolB translocation pr 99.9 6.4E-23 1.4E-27 214.9 28.5 247 43-411 155-409 (419)
15 PRK04792 tolB translocation pr 99.9 2.4E-23 5.2E-28 222.0 25.6 234 4-341 197-433 (448)
16 PRK02889 tolB translocation pr 99.9 6E-23 1.3E-27 218.6 25.1 227 5-333 176-405 (427)
17 PRK04922 tolB translocation pr 99.9 8.1E-23 1.8E-27 218.5 24.9 235 4-342 183-420 (433)
18 PRK04922 tolB translocation pr 99.9 2.3E-22 5E-27 215.0 27.7 251 42-411 167-420 (433)
19 PRK04792 tolB translocation pr 99.9 3.8E-22 8.1E-27 212.9 28.4 248 43-410 183-433 (448)
20 PRK02889 tolB translocation pr 99.9 3.7E-22 8.1E-27 212.5 28.1 244 43-409 164-410 (427)
21 PRK00178 tolB translocation pr 99.9 2E-22 4.3E-27 216.6 25.4 226 6-333 180-408 (430)
22 PRK00178 tolB translocation pr 99.9 8.3E-22 1.8E-26 211.8 28.7 251 41-410 161-414 (430)
23 COG4946 Uncharacterized protei 99.9 1.3E-21 2.8E-26 190.1 26.2 364 6-446 60-509 (668)
24 PRK01742 tolB translocation pr 99.9 6.6E-21 1.4E-25 203.3 24.5 241 4-362 183-426 (429)
25 PRK01742 tolB translocation pr 99.9 2.2E-20 4.8E-25 199.3 26.7 243 42-410 168-412 (429)
26 COG1505 Serine proteases of th 99.9 3.6E-19 7.9E-24 180.9 33.6 288 433-740 347-647 (648)
27 KOG2237 Predicted serine prote 99.9 1.6E-18 3.5E-23 177.0 38.0 291 435-742 391-708 (712)
28 KOG1455 Lysophospholipase [Lip 99.9 2.6E-20 5.7E-25 174.7 19.2 236 479-739 25-312 (313)
29 PLN02298 hydrolase, alpha/beta 99.9 1.1E-19 2.5E-24 188.3 26.3 245 476-745 27-323 (330)
30 PRK10566 esterase; Provisional 99.9 9.4E-20 2E-24 181.1 23.5 220 493-740 11-249 (249)
31 PRK13604 luxD acyl transferase 99.9 9.5E-20 2.1E-24 177.3 22.1 208 483-720 11-246 (307)
32 PRK05077 frsA fermentation/res 99.8 1.4E-19 3E-24 190.1 24.0 230 478-740 165-413 (414)
33 PLN02385 hydrolase; alpha/beta 99.8 2.4E-19 5.1E-24 186.9 24.1 237 479-741 59-347 (349)
34 PF00930 DPPIV_N: Dipeptidyl p 99.8 6.6E-19 1.4E-23 182.8 23.4 297 2-371 20-347 (353)
35 PF01738 DLH: Dienelactone hyd 99.8 5.4E-20 1.2E-24 178.0 14.3 201 494-740 1-218 (218)
36 PF00930 DPPIV_N: Dipeptidyl p 99.8 7.9E-19 1.7E-23 182.2 23.6 302 39-451 1-353 (353)
37 TIGR02800 propeller_TolB tol-p 99.8 8.8E-19 1.9E-23 188.5 24.9 228 4-333 169-399 (417)
38 TIGR02821 fghA_ester_D S-formy 99.8 9.5E-19 2.1E-23 175.1 23.3 237 482-740 14-275 (275)
39 TIGR02800 propeller_TolB tol-p 99.8 3E-18 6.4E-23 184.4 27.3 231 39-372 152-385 (417)
40 PLN02442 S-formylglutathione h 99.8 1.8E-18 3.8E-23 173.2 23.4 239 480-741 17-282 (283)
41 PHA02857 monoglyceride lipase; 99.8 2.2E-18 4.8E-23 174.1 23.9 222 487-739 6-273 (276)
42 PF05448 AXE1: Acetyl xylan es 99.8 4E-19 8.8E-24 178.1 17.4 232 477-739 52-320 (320)
43 COG0412 Dienelactone hydrolase 99.8 4.2E-18 9E-23 163.8 23.2 212 482-741 3-235 (236)
44 PRK10749 lysophospholipase L2; 99.8 4.9E-18 1.1E-22 175.2 23.5 230 481-739 30-329 (330)
45 COG0823 TolB Periplasmic compo 99.8 3.6E-18 7.8E-23 177.2 20.8 229 5-333 173-404 (425)
46 KOG4391 Predicted alpha/beta h 99.8 1.7E-18 3.6E-23 152.2 14.4 235 472-741 45-284 (300)
47 COG0823 TolB Periplasmic compo 99.8 2.4E-17 5.2E-22 171.2 23.4 216 59-370 170-388 (425)
48 PLN02652 hydrolase; alpha/beta 99.8 4.1E-17 8.8E-22 169.9 24.7 231 481-741 110-389 (395)
49 PRK10162 acetyl esterase; Prov 99.8 2.6E-17 5.7E-22 167.8 22.7 232 479-741 55-317 (318)
50 KOG1552 Predicted alpha/beta h 99.8 1E-17 2.3E-22 154.3 16.7 221 480-742 34-255 (258)
51 COG1647 Esterase/lipase [Gener 99.8 7.3E-18 1.6E-22 150.0 14.9 198 513-737 16-242 (243)
52 COG3458 Acetyl esterase (deace 99.8 9.9E-18 2.2E-22 153.3 14.4 232 477-740 52-318 (321)
53 PF14583 Pectate_lyase22: Olig 99.7 2.5E-15 5.5E-20 148.6 30.4 342 19-460 21-384 (386)
54 PRK11460 putative hydrolase; P 99.7 2.2E-16 4.8E-21 153.0 22.1 127 582-741 84-210 (232)
55 COG4946 Uncharacterized protei 99.7 1.2E-14 2.7E-19 142.0 27.2 251 3-372 246-509 (668)
56 COG2267 PldB Lysophospholipase 99.7 2.4E-15 5.2E-20 150.4 23.1 232 481-741 9-296 (298)
57 PF06500 DUF1100: Alpha/beta h 99.7 3.4E-16 7.3E-21 157.2 14.9 227 478-740 162-410 (411)
58 PF02230 Abhydrolase_2: Phosph 99.7 1E-15 2.3E-20 147.3 17.9 129 582-740 87-216 (216)
59 TIGR01840 esterase_phb esteras 99.7 6.8E-16 1.5E-20 148.3 16.3 189 496-703 1-197 (212)
60 KOG0271 Notchless-like WD40 re 99.7 7.6E-15 1.6E-19 139.7 21.3 289 32-442 117-468 (480)
61 COG0657 Aes Esterase/lipase [L 99.7 7.7E-15 1.7E-19 150.4 21.2 222 489-737 59-308 (312)
62 COG4099 Predicted peptidase [G 99.7 1.2E-15 2.5E-20 141.2 13.3 208 489-738 169-384 (387)
63 TIGR01607 PST-A Plasmodium sub 99.7 6.7E-15 1.5E-19 151.2 20.5 236 486-737 2-331 (332)
64 PF12715 Abhydrolase_7: Abhydr 99.7 4.6E-16 9.9E-21 153.0 10.7 226 476-715 83-344 (390)
65 PRK05371 x-prolyl-dipeptidyl a 99.6 3.8E-14 8.2E-19 158.9 26.8 192 545-743 270-523 (767)
66 KOG1515 Arylacetamide deacetyl 99.6 2E-14 4.4E-19 143.0 21.4 235 479-739 61-335 (336)
67 TIGR00976 /NonD putative hydro 99.6 7.4E-15 1.6E-19 161.7 19.7 131 487-637 2-133 (550)
68 TIGR03611 RutD pyrimidine util 99.6 5.7E-15 1.2E-19 147.8 17.0 194 512-737 13-256 (257)
69 PF07859 Abhydrolase_3: alpha/ 99.6 1.7E-15 3.7E-20 146.2 11.9 181 515-720 1-210 (211)
70 TIGR03100 hydr1_PEP hydrolase, 99.6 2.6E-14 5.7E-19 143.0 20.1 229 482-737 3-273 (274)
71 PRK00870 haloalkane dehalogena 99.6 3E-14 6.6E-19 145.7 20.9 225 480-739 20-301 (302)
72 PLN02511 hydrolase 99.6 2.3E-14 4.9E-19 150.3 19.9 238 480-742 70-368 (388)
73 COG0400 Predicted esterase [Ge 99.6 1.3E-14 2.9E-19 134.2 15.8 127 582-740 80-206 (207)
74 PF12695 Abhydrolase_5: Alpha/ 99.6 1E-14 2.2E-19 131.6 14.9 145 514-718 1-145 (145)
75 KOG4178 Soluble epoxide hydrol 99.6 1.2E-13 2.7E-18 132.6 22.4 199 512-739 44-320 (322)
76 TIGR03343 biphenyl_bphD 2-hydr 99.6 2.1E-14 4.6E-19 145.7 18.3 198 512-737 30-281 (282)
77 TIGR03866 PQQ_ABC_repeats PQQ- 99.6 1E-12 2.2E-17 134.8 30.6 268 5-411 11-288 (300)
78 COG2706 3-carboxymuconate cycl 99.6 1.4E-12 2.9E-17 125.1 27.4 290 6-411 17-332 (346)
79 TIGR02240 PHA_depoly_arom poly 99.6 9E-14 2E-18 140.3 20.9 173 551-740 48-267 (276)
80 PRK10985 putative hydrolase; P 99.6 1.3E-13 2.7E-18 141.9 21.9 228 486-741 36-322 (324)
81 PRK10673 acyl-CoA esterase; Pr 99.6 6.7E-14 1.5E-18 139.7 19.1 195 512-738 16-254 (255)
82 TIGR03056 bchO_mg_che_rel puta 99.6 8.8E-14 1.9E-18 141.0 19.8 194 512-737 28-278 (278)
83 PLN03087 BODYGUARD 1 domain co 99.6 1.2E-13 2.7E-18 145.5 20.9 222 484-738 178-478 (481)
84 TIGR02427 protocat_pcaD 3-oxoa 99.6 2.4E-14 5.3E-19 142.5 14.6 193 512-736 13-250 (251)
85 PLN02824 hydrolase, alpha/beta 99.6 1.8E-13 4E-18 139.5 21.0 195 513-739 30-294 (294)
86 PF02129 Peptidase_S15: X-Pro 99.6 3.2E-14 6.9E-19 142.3 14.1 213 490-718 1-271 (272)
87 TIGR03866 PQQ_ABC_repeats PQQ- 99.6 1E-11 2.2E-16 127.3 32.7 271 60-463 9-283 (300)
88 PLN02965 Probable pheophorbida 99.6 2.5E-13 5.5E-18 135.2 19.9 196 513-738 4-252 (255)
89 PLN00021 chlorophyllase 99.6 6E-13 1.3E-17 133.7 22.0 208 492-744 37-288 (313)
90 PLN02679 hydrolase, alpha/beta 99.5 1.5E-13 3.2E-18 143.4 18.1 199 512-738 88-356 (360)
91 PF10503 Esterase_phd: Esteras 99.5 1.3E-13 2.8E-18 129.3 14.7 188 495-702 2-197 (220)
92 KOG0315 G-protein beta subunit 99.5 3.3E-12 7.1E-17 115.2 22.5 275 2-413 17-299 (311)
93 PF14583 Pectate_lyase22: Olig 99.5 8.2E-12 1.8E-16 124.0 27.2 290 4-371 59-370 (386)
94 PRK06489 hypothetical protein; 99.5 5.4E-13 1.2E-17 139.6 20.0 173 552-740 103-358 (360)
95 TIGR03695 menH_SHCHC 2-succiny 99.5 3.1E-13 6.6E-18 134.4 16.6 195 513-736 2-250 (251)
96 PF08840 BAAT_C: BAAT / Acyl-C 99.5 1.9E-13 4.1E-18 130.0 14.1 157 583-741 4-212 (213)
97 PRK03592 haloalkane dehalogena 99.5 7.8E-13 1.7E-17 135.0 19.3 199 512-741 27-291 (295)
98 PLN02872 triacylglycerol lipas 99.5 6.5E-13 1.4E-17 137.7 18.7 245 477-742 40-392 (395)
99 COG2945 Predicted hydrolase of 99.5 5.9E-13 1.3E-17 116.2 15.2 202 481-737 4-205 (210)
100 PRK11071 esterase YqiA; Provis 99.5 1.1E-12 2.4E-17 122.6 18.4 177 513-737 2-189 (190)
101 TIGR01250 pro_imino_pep_2 prol 99.5 7.5E-13 1.6E-17 134.8 18.6 195 512-737 25-288 (288)
102 PLN02894 hydrolase, alpha/beta 99.5 2.5E-12 5.3E-17 135.6 22.9 204 512-744 105-390 (402)
103 TIGR01836 PHA_synth_III_C poly 99.5 1.5E-12 3.3E-17 135.6 21.0 184 545-738 85-349 (350)
104 COG0429 Predicted hydrolase of 99.5 7.9E-13 1.7E-17 126.6 16.8 229 485-741 53-342 (345)
105 TIGR01738 bioH putative pimelo 99.5 5.2E-13 1.1E-17 132.3 16.4 190 512-736 4-245 (245)
106 TIGR01249 pro_imino_pep_1 prol 99.5 1.2E-12 2.7E-17 133.8 18.2 172 549-739 48-305 (306)
107 PRK10349 carboxylesterase BioH 99.5 7.2E-13 1.6E-17 132.2 16.0 190 513-737 14-254 (256)
108 PLN02578 hydrolase 99.5 2.2E-12 4.7E-17 134.6 19.5 170 551-737 109-353 (354)
109 PRK07581 hypothetical protein; 99.5 1.2E-12 2.7E-17 136.1 17.5 181 549-741 66-338 (339)
110 PF10282 Lactonase: Lactonase, 99.5 1.6E-11 3.5E-16 127.2 25.3 291 5-410 13-332 (345)
111 KOG0318 WD40 repeat stress pro 99.5 4.2E-11 9.1E-16 119.3 26.4 137 32-195 192-341 (603)
112 PRK14875 acetoin dehydrogenase 99.5 2.1E-12 4.5E-17 136.8 18.6 192 512-738 131-370 (371)
113 TIGR01392 homoserO_Ac_trn homo 99.5 2.3E-12 4.9E-17 134.5 18.4 68 667-737 283-351 (351)
114 PRK03204 haloalkane dehalogena 99.5 2.5E-12 5.4E-17 130.0 18.0 196 512-736 34-285 (286)
115 TIGR03101 hydr2_PEP hydrolase, 99.5 1.8E-11 3.9E-16 119.5 23.0 207 484-715 3-243 (266)
116 PRK00175 metX homoserine O-ace 99.5 6.3E-12 1.4E-16 132.1 21.2 72 667-741 304-376 (379)
117 PF12697 Abhydrolase_6: Alpha/ 99.4 4.6E-13 1E-17 130.9 10.8 159 546-720 17-218 (228)
118 KOG0271 Notchless-like WD40 re 99.4 9.1E-12 2E-16 119.0 18.7 85 2-107 134-226 (480)
119 PRK11028 6-phosphogluconolacto 99.4 1.4E-10 3.1E-15 120.2 29.7 263 5-370 12-292 (330)
120 KOG3043 Predicted hydrolase re 99.4 1.6E-12 3.4E-17 116.6 12.0 165 546-741 59-242 (242)
121 PRK08775 homoserine O-acetyltr 99.4 3.1E-12 6.6E-17 133.0 16.0 175 550-739 95-339 (343)
122 PRK10439 enterobactin/ferric e 99.4 3.2E-11 6.8E-16 125.9 23.2 220 480-736 179-406 (411)
123 PLN03084 alpha/beta hydrolase 99.4 2.4E-11 5.3E-16 125.9 22.2 193 512-737 127-382 (383)
124 KOG0272 U4/U6 small nuclear ri 99.4 2.6E-11 5.5E-16 117.7 20.5 269 30-444 175-449 (459)
125 PRK11126 2-succinyl-6-hydroxy- 99.4 9.1E-12 2E-16 123.2 17.7 188 512-738 2-241 (242)
126 COG3509 LpqC Poly(3-hydroxybut 99.4 2.2E-11 4.7E-16 114.6 18.5 226 489-740 42-308 (312)
127 KOG0293 WD40 repeat-containing 99.4 1.3E-11 2.9E-16 119.1 17.5 196 32-332 226-426 (519)
128 KOG1838 Alpha/beta hydrolase [ 99.4 4.6E-11 9.9E-16 119.4 20.7 241 477-740 89-389 (409)
129 KOG1454 Predicted hydrolase/ac 99.4 8E-12 1.7E-16 126.4 15.0 202 511-740 57-325 (326)
130 KOG3101 Esterase D [General fu 99.4 8.4E-12 1.8E-16 109.9 12.8 213 492-721 26-264 (283)
131 PLN02211 methyl indole-3-aceta 99.4 2.8E-11 6.1E-16 121.0 18.5 194 512-736 18-267 (273)
132 cd00200 WD40 WD40 domain, foun 99.4 5.1E-10 1.1E-14 113.3 27.8 265 32-443 11-279 (289)
133 KOG0291 WD40-repeat-containing 99.4 3.8E-10 8.3E-15 117.4 26.3 228 32-372 309-541 (893)
134 KOG4627 Kynurenine formamidase 99.4 1.1E-11 2.4E-16 108.7 12.5 200 480-719 44-248 (270)
135 KOG4409 Predicted hydrolase/ac 99.4 1.7E-11 3.8E-16 118.2 14.9 200 512-738 90-363 (365)
136 KOG1407 WD40 repeat protein [F 99.3 2.7E-10 5.9E-15 103.8 21.6 271 32-448 22-295 (313)
137 KOG0279 G protein beta subunit 99.3 4.1E-10 8.8E-15 103.7 22.8 258 3-370 36-302 (315)
138 PF02897 Peptidase_S9_N: Proly 99.3 1.1E-09 2.3E-14 117.5 30.2 319 40-468 76-413 (414)
139 COG2936 Predicted acyl esteras 99.3 3.4E-11 7.4E-16 125.6 17.5 241 478-741 16-319 (563)
140 KOG4497 Uncharacterized conser 99.3 8.1E-11 1.8E-15 110.5 16.8 138 35-262 13-153 (447)
141 KOG4667 Predicted esterase [Li 99.3 5.8E-11 1.2E-15 105.3 13.1 224 480-739 9-258 (269)
142 KOG0279 G protein beta subunit 99.3 2.7E-09 5.9E-14 98.4 24.0 274 32-445 17-303 (315)
143 PRK11028 6-phosphogluconolacto 99.3 8.5E-09 1.8E-13 107.0 31.4 222 175-467 80-314 (330)
144 PF00756 Esterase: Putative es 99.3 3.2E-12 7E-17 127.0 5.6 219 491-736 5-251 (251)
145 KOG0266 WD40 repeat-containing 99.3 9.7E-10 2.1E-14 118.1 24.6 280 32-454 161-451 (456)
146 COG2706 3-carboxymuconate cycl 99.3 2.9E-08 6.3E-13 95.8 31.6 319 44-468 3-332 (346)
147 KOG0318 WD40 repeat stress pro 99.3 2.9E-09 6.3E-14 106.5 25.6 233 36-410 24-273 (603)
148 PF12740 Chlorophyllase2: Chlo 99.3 4.1E-10 8.9E-15 106.8 18.6 180 495-719 5-206 (259)
149 KOG0973 Histone transcription 99.2 2.5E-10 5.4E-15 124.0 18.4 163 32-271 71-248 (942)
150 PRK06765 homoserine O-acetyltr 99.2 1.3E-10 2.8E-15 120.7 15.8 69 667-738 318-387 (389)
151 KOG2984 Predicted hydrolase [G 99.2 1.8E-11 3.8E-16 107.1 7.2 173 553-738 70-275 (277)
152 KOG2055 WD40 repeat protein [G 99.2 6.9E-10 1.5E-14 109.1 18.9 259 5-370 235-501 (514)
153 PF10282 Lactonase: Lactonase, 99.2 5.3E-09 1.2E-13 108.5 26.4 301 61-467 14-332 (345)
154 KOG2055 WD40 repeat protein [G 99.2 1.1E-09 2.4E-14 107.7 19.6 279 29-444 212-501 (514)
155 PF08662 eIF2A: Eukaryotic tra 99.2 5.5E-10 1.2E-14 104.5 17.0 121 155-316 37-162 (194)
156 PLN02980 2-oxoglutarate decarb 99.2 5.4E-10 1.2E-14 136.8 21.5 201 512-741 1371-1641(1655)
157 cd00200 WD40 WD40 domain, foun 99.2 4.8E-09 1E-13 106.1 25.2 246 4-370 30-280 (289)
158 KOG0315 G-protein beta subunit 99.2 9.9E-09 2.1E-13 93.1 23.3 267 59-465 17-294 (311)
159 PRK05855 short chain dehydroge 99.2 2.6E-10 5.7E-15 128.8 16.8 211 489-739 10-292 (582)
160 KOG0293 WD40 repeat-containing 99.2 1.1E-09 2.3E-14 106.2 18.0 174 157-405 248-428 (519)
161 KOG0273 Beta-transducin family 99.2 8.9E-09 1.9E-13 101.7 24.1 274 30-458 235-522 (524)
162 PF03583 LIP: Secretory lipase 99.2 1.4E-09 3.1E-14 108.5 19.1 191 545-744 17-286 (290)
163 KOG0291 WD40-repeat-containing 99.2 9E-09 1.9E-13 107.4 24.9 280 32-458 352-651 (893)
164 KOG0305 Anaphase promoting com 99.2 2.4E-09 5.2E-14 110.4 20.3 250 5-372 197-452 (484)
165 PF03403 PAF-AH_p_II: Platelet 99.2 6.7E-10 1.4E-14 114.8 16.3 187 510-741 98-360 (379)
166 PRK13616 lipoprotein LpqB; Pro 99.2 1.5E-09 3.3E-14 118.1 19.7 172 32-284 351-527 (591)
167 PF08662 eIF2A: Eukaryotic tra 99.2 2E-09 4.3E-14 100.8 17.3 151 33-259 8-161 (194)
168 TIGR02658 TTQ_MADH_Hv methylam 99.1 1.3E-07 2.9E-12 95.3 29.3 291 61-464 26-335 (352)
169 COG0627 Predicted esterase [Ge 99.1 1.2E-09 2.7E-14 108.4 14.5 147 592-742 141-314 (316)
170 KOG0272 U4/U6 small nuclear ri 99.1 2.4E-09 5.2E-14 104.2 15.3 248 5-372 197-451 (459)
171 KOG0286 G-protein beta subunit 99.1 9.8E-08 2.1E-12 88.9 25.0 266 31-441 56-331 (343)
172 PF08538 DUF1749: Protein of u 99.1 1.2E-09 2.6E-14 105.6 13.1 208 512-737 33-303 (303)
173 PRK07868 acyl-CoA synthetase; 99.1 7.9E-09 1.7E-13 122.3 22.9 234 493-748 48-370 (994)
174 KOG2112 Lysophospholipase [Lip 99.1 5.1E-09 1.1E-13 94.1 15.9 116 596-738 88-203 (206)
175 TIGR01838 PHA_synth_I poly(R)- 99.1 5.3E-09 1.1E-13 111.8 18.8 125 493-637 173-303 (532)
176 COG3571 Predicted hydrolase of 99.1 8.1E-09 1.8E-13 87.1 15.7 166 513-720 15-183 (213)
177 KOG1446 Histone H3 (Lys4) meth 99.1 3.2E-07 7E-12 86.7 27.9 251 32-413 16-273 (311)
178 KOG1407 WD40 repeat protein [F 99.1 4.3E-08 9.4E-13 89.7 21.4 251 2-373 39-294 (313)
179 PF02897 Peptidase_S9_N: Proly 99.1 4.4E-08 9.5E-13 105.1 25.8 270 34-409 127-411 (414)
180 TIGR02658 TTQ_MADH_Hv methylam 99.1 2.3E-07 4.9E-12 93.7 28.3 94 5-105 27-123 (352)
181 PTZ00421 coronin; Provisional 99.1 9.3E-08 2E-12 102.5 27.2 174 171-409 121-297 (493)
182 PF02239 Cytochrom_D1: Cytochr 99.1 3.2E-08 6.9E-13 102.4 22.9 316 5-467 16-356 (369)
183 PF00561 Abhydrolase_1: alpha/ 99.0 2.7E-10 5.9E-15 111.6 6.7 164 555-730 1-226 (230)
184 KOG4497 Uncharacterized conser 99.0 1.4E-08 3.1E-13 95.7 17.5 103 32-195 50-154 (447)
185 COG2382 Fes Enterochelin ester 99.0 6E-09 1.3E-13 99.4 14.2 221 480-741 68-297 (299)
186 KOG0266 WD40 repeat-containing 99.0 9.5E-08 2.1E-12 102.8 25.0 251 6-370 182-441 (456)
187 KOG0973 Histone transcription 99.0 2.9E-08 6.2E-13 108.4 20.0 203 32-330 15-252 (942)
188 KOG0286 G-protein beta subunit 99.0 3.1E-07 6.7E-12 85.6 23.5 221 157-458 77-302 (343)
189 KOG3847 Phospholipase A2 (plat 99.0 6.4E-09 1.4E-13 97.9 12.3 188 509-741 115-373 (399)
190 PF09752 DUF2048: Uncharacteri 99.0 3.5E-08 7.5E-13 97.1 17.9 216 494-736 77-346 (348)
191 PF05728 UPF0227: Uncharacteri 99.0 4.4E-08 9.6E-13 90.0 17.4 121 601-736 59-186 (187)
192 KOG0296 Angio-associated migra 99.0 4E-07 8.8E-12 87.5 24.1 264 7-370 88-387 (399)
193 KOG2096 WD40 repeat protein [G 99.0 1.7E-07 3.6E-12 88.3 20.7 278 32-444 88-392 (420)
194 PF02239 Cytochrom_D1: Cytochr 98.9 5.7E-08 1.2E-12 100.5 19.7 289 4-409 57-354 (369)
195 KOG1446 Histone H3 (Lys4) meth 98.9 3.1E-06 6.6E-11 80.2 28.3 231 158-469 37-272 (311)
196 KOG0263 Transcription initiati 98.9 3.8E-08 8.3E-13 103.7 17.2 145 175-371 494-639 (707)
197 PTZ00420 coronin; Provisional 98.9 1.2E-06 2.6E-11 94.6 28.6 118 175-332 126-249 (568)
198 KOG2382 Predicted alpha/beta h 98.9 4.2E-08 9.1E-13 95.1 15.3 202 511-739 51-313 (315)
199 PLN00181 protein SPA1-RELATED; 98.9 3.5E-06 7.7E-11 98.0 33.4 229 32-371 485-728 (793)
200 KOG0645 WD40 repeat protein [G 98.9 3E-06 6.6E-11 78.4 25.2 195 32-327 16-223 (312)
201 KOG2314 Translation initiation 98.9 4.8E-07 1E-11 91.5 21.9 267 6-370 283-556 (698)
202 PF02273 Acyl_transf_2: Acyl t 98.9 2.4E-07 5.2E-12 84.7 17.8 207 486-720 7-239 (294)
203 KOG0282 mRNA splicing factor [ 98.9 5.8E-08 1.3E-12 96.5 15.0 223 3-333 235-464 (503)
204 KOG2315 Predicted translation 98.8 9.4E-06 2E-10 82.8 30.3 352 6-447 12-376 (566)
205 KOG0273 Beta-transducin family 98.8 7.2E-07 1.6E-11 88.6 21.4 257 2-371 254-513 (524)
206 COG4188 Predicted dienelactone 98.8 4.4E-08 9.6E-13 96.6 12.9 219 481-719 38-295 (365)
207 cd00312 Esterase_lipase Estera 98.8 1.2E-08 2.6E-13 112.0 10.1 129 493-637 78-214 (493)
208 KOG2564 Predicted acetyltransf 98.8 1E-07 2.2E-12 88.8 13.8 123 480-631 49-177 (343)
209 KOG0772 Uncharacterized conser 98.8 3.9E-07 8.4E-12 91.4 18.6 239 157-461 189-447 (641)
210 KOG2139 WD40 repeat protein [G 98.8 1.5E-07 3.2E-12 90.2 14.2 109 28-197 193-303 (445)
211 PRK10115 protease 2; Provision 98.8 6.4E-06 1.4E-10 92.8 29.9 260 33-412 129-404 (686)
212 PTZ00421 coronin; Provisional 98.8 2.2E-06 4.9E-11 92.0 24.9 202 32-333 77-292 (493)
213 PF07224 Chlorophyllase: Chlor 98.8 5.4E-08 1.2E-12 89.9 10.5 183 493-719 32-231 (307)
214 KOG0265 U5 snRNP-specific prot 98.8 5.1E-06 1.1E-10 78.0 23.5 249 27-405 43-299 (338)
215 PRK13616 lipoprotein LpqB; Pro 98.8 3.1E-07 6.7E-12 100.3 18.2 171 89-333 352-529 (591)
216 COG5354 Uncharacterized protei 98.8 6.7E-06 1.5E-10 82.8 25.5 294 32-448 73-382 (561)
217 KOG2314 Translation initiation 98.8 5.6E-06 1.2E-10 84.1 25.1 303 32-446 251-558 (698)
218 TIGR01839 PHA_synth_II poly(R) 98.7 3.8E-07 8.2E-12 96.4 17.8 162 545-718 238-481 (560)
219 KOG0275 Conserved WD40 repeat- 98.7 2.4E-07 5.2E-12 87.2 14.2 250 32-412 215-477 (508)
220 KOG1009 Chromatin assembly com 98.7 7.5E-07 1.6E-11 86.9 17.7 131 5-196 36-187 (434)
221 KOG0305 Anaphase promoting com 98.7 4.7E-06 1E-10 86.5 24.6 266 33-444 180-450 (484)
222 KOG2624 Triglyceride lipase-ch 98.7 6.2E-07 1.4E-11 91.8 16.7 241 477-740 44-399 (403)
223 PF06821 Ser_hydrolase: Serine 98.7 5E-07 1.1E-11 82.2 14.4 100 601-720 55-155 (171)
224 KOG1273 WD40 repeat protein [G 98.7 7.6E-06 1.6E-10 77.3 22.1 253 33-414 26-292 (405)
225 KOG2315 Predicted translation 98.7 2.8E-06 6E-11 86.6 20.6 222 5-316 146-373 (566)
226 COG2819 Predicted hydrolase of 98.7 3.1E-06 6.6E-11 80.1 19.5 139 577-737 116-259 (264)
227 KOG0772 Uncharacterized conser 98.7 1.1E-06 2.3E-11 88.3 17.0 241 2-332 186-446 (641)
228 PF08450 SGL: SMP-30/Gluconola 98.7 9.4E-06 2E-10 80.1 24.1 216 157-444 22-244 (246)
229 PLN00181 protein SPA1-RELATED; 98.6 1.4E-05 3.1E-10 93.0 28.4 221 5-332 505-739 (793)
230 COG4757 Predicted alpha/beta h 98.6 3.1E-07 6.7E-12 83.2 11.0 221 484-736 8-280 (281)
231 KOG0282 mRNA splicing factor [ 98.6 5E-07 1.1E-11 90.0 13.4 247 32-410 216-470 (503)
232 KOG0263 Transcription initiati 98.6 8.8E-07 1.9E-11 93.7 15.9 208 14-326 437-646 (707)
233 cd00707 Pancreat_lipase_like P 98.6 1.6E-07 3.4E-12 93.5 9.8 108 512-635 36-146 (275)
234 PF10340 DUF2424: Protein of u 98.6 2.3E-06 5.1E-11 86.0 18.0 216 495-737 107-364 (374)
235 KOG0265 U5 snRNP-specific prot 98.6 2E-05 4.4E-10 74.1 22.2 219 157-460 69-297 (338)
236 KOG0296 Angio-associated migra 98.6 8.2E-05 1.8E-09 72.0 26.3 178 32-313 66-249 (399)
237 KOG1274 WD40 repeat protein [G 98.6 1.6E-05 3.6E-10 85.7 24.0 147 175-372 97-253 (933)
238 PTZ00420 coronin; Provisional 98.6 0.0001 2.2E-09 80.0 30.4 229 170-469 69-303 (568)
239 KOG2096 WD40 repeat protein [G 98.6 6.5E-06 1.4E-10 77.9 18.4 167 157-370 209-392 (420)
240 COG3208 GrsT Predicted thioest 98.6 1.9E-06 4E-11 80.1 14.7 62 669-741 173-234 (244)
241 KOG2139 WD40 repeat protein [G 98.6 8.9E-06 1.9E-10 78.4 19.5 118 19-196 130-260 (445)
242 PF07433 DUF1513: Protein of u 98.6 8.8E-05 1.9E-09 72.3 26.5 224 33-333 7-249 (305)
243 KOG2551 Phospholipase/carboxyh 98.6 1.7E-06 3.7E-11 78.5 13.7 124 585-742 92-223 (230)
244 KOG2048 WD40 repeat protein [G 98.6 0.00014 3E-09 76.1 29.0 209 236-523 377-594 (691)
245 PF06342 DUF1057: Alpha/beta h 98.5 8.2E-06 1.8E-10 77.4 17.8 103 511-635 34-136 (297)
246 COG2021 MET2 Homoserine acetyl 98.5 3.5E-06 7.5E-11 83.2 15.9 153 579-738 126-367 (368)
247 TIGR03230 lipo_lipase lipoprot 98.5 8.9E-07 1.9E-11 92.0 12.4 109 512-635 41-153 (442)
248 PF03959 FSH1: Serine hydrolas 98.5 8.8E-07 1.9E-11 84.6 11.5 104 587-720 92-203 (212)
249 COG2272 PnbA Carboxylesterase 98.5 7.2E-07 1.6E-11 91.2 11.2 127 494-636 80-217 (491)
250 PF06433 Me-amine-dh_H: Methyl 98.5 5.8E-05 1.3E-09 74.4 23.4 284 4-410 16-328 (342)
251 KOG0645 WD40 repeat protein [G 98.5 2.2E-05 4.7E-10 72.9 19.0 167 158-371 38-215 (312)
252 PF00135 COesterase: Carboxyle 98.5 2.3E-07 5E-12 103.6 7.9 130 493-635 108-244 (535)
253 KOG2106 Uncharacterized conser 98.5 6.8E-05 1.5E-09 75.5 23.7 281 6-370 223-510 (626)
254 PF06433 Me-amine-dh_H: Methyl 98.5 0.00027 5.9E-09 69.8 27.4 215 179-465 99-326 (342)
255 KOG0639 Transducin-like enhanc 98.5 5.2E-06 1.1E-10 83.1 15.6 235 21-372 410-654 (705)
256 KOG0284 Polyadenylation factor 98.5 7.7E-06 1.7E-10 80.0 16.1 223 32-370 98-325 (464)
257 COG5354 Uncharacterized protei 98.4 6.5E-05 1.4E-09 76.0 22.6 240 32-370 34-293 (561)
258 PF06057 VirJ: Bacterial virul 98.4 4.2E-06 9.2E-11 75.1 12.9 170 539-737 14-190 (192)
259 KOG0639 Transducin-like enhanc 98.4 7.8E-06 1.7E-10 81.9 15.4 243 6-370 441-693 (705)
260 PF08450 SGL: SMP-30/Gluconola 98.4 1.5E-05 3.1E-10 78.8 17.7 212 6-316 23-244 (246)
261 COG1073 Hydrolases of the alph 98.4 1.8E-06 3.9E-11 88.2 11.7 78 659-740 218-298 (299)
262 KOG2919 Guanine nucleotide-bin 98.4 2.2E-05 4.7E-10 74.6 17.2 186 158-406 134-332 (406)
263 COG0596 MhpC Predicted hydrola 98.4 8.7E-06 1.9E-10 81.3 16.2 72 555-635 51-122 (282)
264 KOG1274 WD40 repeat protein [G 98.4 2.3E-05 5E-10 84.6 19.4 181 32-317 98-290 (933)
265 KOG1445 Tumor-specific antigen 98.4 9.3E-06 2E-10 83.6 14.8 233 6-332 604-845 (1012)
266 KOG1553 Predicted alpha/beta h 98.3 1.2E-06 2.5E-11 83.9 7.6 183 480-687 213-398 (517)
267 PRK04940 hypothetical protein; 98.3 3.3E-05 7.3E-10 69.3 15.4 116 601-737 60-178 (180)
268 KOG0640 mRNA cleavage stimulat 98.3 0.00021 4.6E-09 67.6 21.0 261 31-414 113-395 (430)
269 KOG0284 Polyadenylation factor 98.3 5.6E-06 1.2E-10 80.9 11.0 146 175-372 139-285 (464)
270 TIGR01849 PHB_depoly_PhaZ poly 98.3 6.3E-05 1.4E-09 77.6 18.9 70 668-739 333-406 (406)
271 KOG0275 Conserved WD40 repeat- 98.3 2.3E-05 4.9E-10 74.2 13.7 207 175-465 264-473 (508)
272 KOG1539 WD repeat protein [Gen 98.2 0.001 2.2E-08 71.6 26.6 195 175-457 449-646 (910)
273 PLN02919 haloacid dehalogenase 98.2 0.00082 1.8E-08 79.6 28.9 177 178-409 686-895 (1057)
274 PF11339 DUF3141: Protein of u 98.2 5.6E-05 1.2E-09 77.6 16.5 49 668-718 293-348 (581)
275 KOG0643 Translation initiation 98.2 4.8E-05 1E-09 70.5 14.3 224 6-329 75-317 (327)
276 COG3386 Gluconolactonase [Carb 98.2 0.00061 1.3E-08 68.2 23.4 143 157-331 47-193 (307)
277 PF10230 DUF2305: Uncharacteri 98.2 1.9E-05 4.1E-10 78.1 12.3 187 512-719 2-265 (266)
278 KOG0319 WD40-repeat-containing 98.2 0.00026 5.6E-09 74.9 20.8 194 35-332 24-223 (775)
279 KOG2919 Guanine nucleotide-bin 98.2 0.00018 3.8E-09 68.6 17.7 201 184-462 121-331 (406)
280 PF10647 Gmad1: Lipoprotein Lp 98.2 0.00026 5.7E-09 69.5 20.0 72 19-104 10-83 (253)
281 PF07433 DUF1513: Protein of u 98.2 0.00059 1.3E-08 66.7 21.9 248 7-332 30-286 (305)
282 COG1506 DAP2 Dipeptidyl aminop 98.2 0.001 2.3E-08 74.6 27.2 282 3-371 41-330 (620)
283 KOG0310 Conserved WD40 repeat- 98.2 0.00047 1E-08 69.5 21.3 264 32-445 28-299 (487)
284 KOG1445 Tumor-specific antigen 98.1 4.9E-05 1.1E-09 78.5 14.6 167 157-370 652-832 (1012)
285 KOG1009 Chromatin assembly com 98.1 0.00079 1.7E-08 66.4 21.2 59 175-259 124-182 (434)
286 KOG0295 WD40 repeat-containing 98.1 0.00034 7.3E-09 67.9 18.2 246 32-411 110-373 (406)
287 KOG0643 Translation initiation 98.1 0.0017 3.8E-08 60.5 21.7 172 158-370 75-250 (327)
288 PF04762 IKI3: IKI3 family; I 98.1 0.0044 9.6E-08 72.1 30.5 110 243-370 211-323 (928)
289 KOG0283 WD40 repeat-containing 98.1 0.00049 1.1E-08 74.2 20.6 67 167-258 402-468 (712)
290 PF12146 Hydrolase_4: Putative 98.1 1.4E-05 2.9E-10 62.0 6.7 75 491-589 1-78 (79)
291 KOG1273 WD40 repeat protein [G 98.0 0.0023 5E-08 61.1 22.3 231 157-471 45-292 (405)
292 PF06028 DUF915: Alpha/beta hy 98.0 0.0001 2.2E-09 71.4 14.0 151 578-736 82-252 (255)
293 TIGR03502 lipase_Pla1_cef extr 98.0 3.2E-05 6.9E-10 86.0 11.8 93 512-622 449-576 (792)
294 KOG3253 Predicted alpha/beta h 98.0 0.00015 3.2E-09 75.3 15.5 122 596-740 245-375 (784)
295 PF05677 DUF818: Chlamydia CHL 98.0 0.00011 2.4E-09 71.8 13.5 124 480-622 111-236 (365)
296 PLN02919 haloacid dehalogenase 98.0 0.0031 6.7E-08 74.8 28.1 229 177-463 626-892 (1057)
297 KOG1524 WD40 repeat-containing 98.0 0.00023 5E-09 72.4 15.2 166 32-316 106-275 (737)
298 KOG0640 mRNA cleavage stimulat 98.0 0.00051 1.1E-08 65.1 16.5 174 169-413 166-346 (430)
299 COG1770 PtrB Protease II [Amin 98.0 0.0078 1.7E-07 64.3 26.8 267 32-412 130-406 (682)
300 KOG0306 WD40-repeat-containing 98.0 0.0013 2.9E-08 69.9 20.9 202 32-330 375-581 (888)
301 KOG2394 WD40 protein DMR-N9 [G 98.0 0.0036 7.9E-08 64.1 23.3 63 298-372 290-353 (636)
302 COG3243 PhaC Poly(3-hydroxyalk 98.0 8.3E-05 1.8E-09 74.6 11.7 88 545-637 130-218 (445)
303 KOG0306 WD40-repeat-containing 97.9 0.0011 2.3E-08 70.6 20.1 249 6-372 395-655 (888)
304 KOG1524 WD40 repeat-containing 97.9 0.003 6.5E-08 64.6 22.5 39 157-195 126-166 (737)
305 COG3545 Predicted esterase of 97.9 0.00098 2.1E-08 58.7 16.7 118 601-738 59-178 (181)
306 PF10142 PhoPQ_related: PhoPQ- 97.9 0.0011 2.3E-08 67.5 19.7 152 583-744 150-325 (367)
307 KOG0295 WD40 repeat-containing 97.9 0.00019 4.2E-09 69.5 13.2 225 4-329 129-364 (406)
308 KOG1408 WD40 repeat protein [F 97.9 0.0067 1.5E-07 64.3 24.9 62 31-104 79-140 (1080)
309 KOG0288 WD40 repeat protein Ti 97.9 0.00019 4.2E-09 70.7 13.0 244 4-370 196-450 (459)
310 TIGR02171 Fb_sc_TIGR02171 Fibr 97.9 0.0011 2.4E-08 73.5 20.3 93 44-194 320-419 (912)
311 PF12048 DUF3530: Protein of u 97.9 0.002 4.3E-08 65.1 20.8 206 491-739 70-309 (310)
312 KOG0278 Serine/threonine kinas 97.9 0.00016 3.5E-09 66.3 11.3 213 8-332 84-300 (334)
313 PRK02888 nitrous-oxide reducta 97.9 0.0028 6.1E-08 68.0 21.8 118 33-195 127-255 (635)
314 KOG0771 Prolactin regulatory e 97.8 0.00035 7.5E-09 69.2 13.7 200 33-332 147-357 (398)
315 KOG0289 mRNA splicing factor [ 97.8 0.0017 3.7E-08 64.6 18.3 206 4-316 282-495 (506)
316 PF07819 PGAP1: PGAP1-like pro 97.8 0.00019 4.1E-09 68.9 11.6 58 580-637 61-124 (225)
317 KOG0278 Serine/threonine kinas 97.8 0.00027 5.8E-09 64.9 11.4 147 167-370 135-286 (334)
318 COG3150 Predicted esterase [Ge 97.8 0.00034 7.3E-09 60.5 11.3 139 577-737 41-187 (191)
319 KOG2106 Uncharacterized conser 97.8 0.017 3.8E-07 58.8 24.7 57 33-101 203-261 (626)
320 COG3386 Gluconolactonase [Carb 97.8 0.0043 9.2E-08 62.2 20.8 49 157-217 143-193 (307)
321 KOG0647 mRNA export protein (c 97.7 0.044 9.5E-07 52.4 26.0 123 23-220 21-148 (347)
322 KOG0307 Vesicle coat complex C 97.7 0.00056 1.2E-08 76.3 14.9 259 33-406 9-288 (1049)
323 KOG0316 Conserved WD40 repeat- 97.7 0.0058 1.3E-07 56.0 18.5 191 32-333 19-215 (307)
324 PF07676 PD40: WD40-like Beta 97.7 5.4E-05 1.2E-09 49.7 4.3 30 32-66 10-39 (39)
325 PF10647 Gmad1: Lipoprotein Lp 97.7 0.0023 4.9E-08 62.9 17.6 168 71-317 9-185 (253)
326 KOG1063 RNA polymerase II elon 97.7 0.0033 7.3E-08 66.4 18.6 107 244-370 528-637 (764)
327 KOG4378 Nuclear protein COP1 [ 97.7 0.0018 3.9E-08 65.5 15.7 174 32-308 123-304 (673)
328 KOG2110 Uncharacterized conser 97.7 0.00087 1.9E-08 65.4 13.2 137 6-219 107-250 (391)
329 KOG0289 mRNA splicing factor [ 97.7 0.01 2.2E-07 59.3 20.7 181 158-409 284-469 (506)
330 KOG4378 Nuclear protein COP1 [ 97.7 0.0024 5.3E-08 64.6 16.6 135 157-333 143-282 (673)
331 PF00975 Thioesterase: Thioest 97.7 0.0012 2.5E-08 64.5 14.5 196 513-736 1-229 (229)
332 COG4947 Uncharacterized protei 97.6 0.00011 2.5E-09 63.2 5.8 123 582-719 84-216 (227)
333 PF11144 DUF2920: Protein of u 97.6 0.0019 4.2E-08 65.5 15.3 130 582-713 163-332 (403)
334 PF05705 DUF829: Eukaryotic pr 97.6 0.0013 2.8E-08 64.5 14.0 65 670-736 176-240 (240)
335 TIGR02171 Fb_sc_TIGR02171 Fibr 97.6 0.0022 4.9E-08 71.1 16.8 90 6-110 330-423 (912)
336 KOG1538 Uncharacterized conser 97.6 0.0019 4.1E-08 67.6 15.3 58 32-104 14-71 (1081)
337 KOG2048 WD40 repeat protein [G 97.6 0.0024 5.2E-08 67.2 16.1 185 4-284 352-548 (691)
338 PF03096 Ndr: Ndr family; Int 97.6 0.0041 8.8E-08 60.4 16.6 216 493-738 10-278 (283)
339 KOG0316 Conserved WD40 repeat- 97.6 0.0057 1.2E-07 56.0 16.3 179 157-410 39-221 (307)
340 PF04762 IKI3: IKI3 family; I 97.6 0.034 7.5E-07 64.9 27.1 84 157-259 237-322 (928)
341 KOG0283 WD40 repeat-containing 97.6 0.003 6.4E-08 68.3 16.9 201 32-332 371-577 (712)
342 KOG1036 Mitotic spindle checkp 97.5 0.097 2.1E-06 50.3 25.5 121 19-218 3-125 (323)
343 KOG1523 Actin-related protein 97.5 0.0077 1.7E-07 57.8 17.0 218 175-461 11-238 (361)
344 KOG0307 Vesicle coat complex C 97.5 0.0012 2.6E-08 73.7 13.0 254 6-364 40-309 (1049)
345 KOG1516 Carboxylesterase and r 97.5 0.00018 3.8E-09 80.3 6.8 130 493-635 96-231 (545)
346 KOG0268 Sof1-like rRNA process 97.5 0.0025 5.4E-08 62.0 13.2 162 158-371 168-335 (433)
347 KOG1538 Uncharacterized conser 97.5 0.003 6.6E-08 66.2 14.6 127 157-332 33-163 (1081)
348 COG3490 Uncharacterized protei 97.5 0.036 7.8E-07 52.7 20.2 117 19-193 58-180 (366)
349 KOG1523 Actin-related protein 97.4 0.016 3.5E-07 55.8 17.9 63 32-106 12-75 (361)
350 KOG0303 Actin-binding protein 97.4 0.02 4.4E-07 56.6 18.9 150 175-371 132-283 (472)
351 KOG2931 Differentiation-relate 97.4 0.0057 1.2E-07 58.5 14.8 224 481-738 22-305 (326)
352 KOG0647 mRNA export protein (c 97.4 0.052 1.1E-06 51.9 20.9 78 157-260 52-132 (347)
353 KOG4840 Predicted hydrolases o 97.4 0.004 8.7E-08 56.6 13.0 90 543-639 55-147 (299)
354 KOG0288 WD40 repeat protein Ti 97.4 0.00097 2.1E-08 65.9 9.9 124 5-193 322-450 (459)
355 COG4814 Uncharacterized protei 97.4 0.0029 6.2E-08 59.0 12.2 152 578-738 115-286 (288)
356 KOG0299 U3 snoRNP-associated p 97.4 0.018 3.8E-07 58.1 17.9 59 32-104 204-262 (479)
357 KOG0771 Prolactin regulatory e 97.3 0.003 6.5E-08 62.8 12.4 148 30-255 186-338 (398)
358 KOG0319 WD40-repeat-containing 97.3 0.067 1.5E-06 57.4 22.8 272 5-408 303-583 (775)
359 PF00151 Lipase: Lipase; Inte 97.3 0.00029 6.2E-09 71.6 5.5 112 511-635 70-186 (331)
360 KOG4328 WD40 protein [Function 97.3 0.19 4.1E-06 51.0 24.6 171 157-370 257-439 (498)
361 PRK02888 nitrous-oxide reducta 97.3 0.011 2.4E-07 63.7 16.8 202 184-462 139-354 (635)
362 KOG1963 WD40 repeat protein [G 97.3 0.066 1.4E-06 58.6 22.6 101 33-196 208-314 (792)
363 KOG0302 Ribosome Assembly prot 97.3 0.018 3.9E-07 56.6 16.6 139 157-332 234-381 (440)
364 PF07082 DUF1350: Protein of u 97.3 0.0025 5.4E-08 60.1 10.3 190 495-718 7-204 (250)
365 KOG2110 Uncharacterized conser 97.2 0.034 7.3E-07 54.7 18.0 134 157-330 106-249 (391)
366 KOG1063 RNA polymerase II elon 97.2 0.02 4.2E-07 60.8 17.4 69 29-107 524-593 (764)
367 KOG1963 WD40 repeat protein [G 97.2 0.11 2.4E-06 57.0 23.4 101 303-444 211-311 (792)
368 KOG0277 Peroxisomal targeting 97.2 0.016 3.5E-07 53.9 14.7 232 34-370 12-253 (311)
369 KOG0650 WD40 repeat nucleolar 97.2 0.013 2.8E-07 61.0 15.7 158 170-370 517-679 (733)
370 PTZ00472 serine carboxypeptida 97.2 0.004 8.6E-08 66.9 12.7 141 491-637 60-217 (462)
371 KOG1332 Vesicle coat complex C 97.2 0.038 8.2E-07 51.2 16.8 243 4-332 32-289 (299)
372 PLN02733 phosphatidylcholine-s 97.2 0.0018 3.8E-08 68.3 9.7 87 545-637 112-202 (440)
373 KOG1920 IkappaB kinase complex 97.2 0.098 2.1E-06 59.7 23.2 39 157-195 90-130 (1265)
374 KOG0264 Nucleosome remodeling 97.2 0.074 1.6E-06 53.7 19.9 154 175-370 228-392 (422)
375 KOG4328 WD40 protein [Function 97.1 0.088 1.9E-06 53.3 20.0 230 5-333 210-452 (498)
376 KOG1007 WD repeat protein TSSC 97.1 0.15 3.1E-06 48.7 20.2 196 32-316 65-277 (370)
377 KOG0264 Nucleosome remodeling 97.1 0.059 1.3E-06 54.4 18.8 215 178-457 181-404 (422)
378 KOG0277 Peroxisomal targeting 97.1 0.044 9.5E-07 51.1 16.5 224 5-329 38-265 (311)
379 PF01674 Lipase_2: Lipase (cla 97.1 0.002 4.3E-08 60.9 7.8 70 545-621 20-95 (219)
380 PF06977 SdiA-regulated: SdiA- 97.1 0.11 2.4E-06 50.3 19.9 206 175-443 22-239 (248)
381 PF05577 Peptidase_S28: Serine 97.1 0.0037 8.1E-08 67.3 11.1 88 547-637 51-149 (434)
382 KOG1539 WD repeat protein [Gen 97.0 0.0032 6.9E-08 68.0 9.9 93 59-216 553-647 (910)
383 KOG0292 Vesicle coat complex C 97.0 0.45 9.7E-06 52.6 25.3 227 32-370 11-269 (1202)
384 KOG0268 Sof1-like rRNA process 97.0 0.017 3.6E-07 56.5 13.2 155 244-457 190-345 (433)
385 COG3391 Uncharacterized conser 97.0 0.59 1.3E-05 49.2 26.3 270 7-409 13-290 (381)
386 KOG4283 Transcription-coupled 96.9 0.044 9.5E-07 52.1 15.1 152 2-222 121-281 (397)
387 KOG0269 WD40 repeat-containing 96.8 0.033 7E-07 60.0 15.2 166 157-370 110-282 (839)
388 KOG0303 Actin-binding protein 96.8 0.23 5E-06 49.4 19.6 121 241-407 81-208 (472)
389 PF07676 PD40: WD40-like Beta 96.8 0.0026 5.7E-08 41.6 4.6 35 293-327 3-39 (39)
390 KOG0290 Conserved WD40 repeat- 96.8 0.2 4.4E-06 47.8 18.3 222 17-332 83-319 (364)
391 KOG2394 WD40 protein DMR-N9 [G 96.8 0.0029 6.3E-08 64.8 6.8 59 32-104 292-350 (636)
392 PF15492 Nbas_N: Neuroblastoma 96.8 0.5 1.1E-05 45.4 20.7 39 175-226 44-82 (282)
393 COG3391 Uncharacterized conser 96.7 0.25 5.5E-06 52.0 20.8 205 33-333 76-285 (381)
394 KOG0313 Microtubule binding pr 96.6 0.64 1.4E-05 46.2 20.9 235 32-370 107-364 (423)
395 PF08386 Abhydrolase_4: TAP-li 96.6 0.0063 1.4E-07 50.2 6.1 60 672-738 34-93 (103)
396 KOG1408 WD40 repeat protein [F 96.5 0.071 1.5E-06 57.0 14.7 99 244-370 599-702 (1080)
397 KOG1332 Vesicle coat complex C 96.5 0.46 1E-05 44.3 18.0 66 296-370 205-275 (299)
398 KOG0292 Vesicle coat complex C 96.5 1.8 3.9E-05 48.2 25.3 276 30-411 51-357 (1202)
399 KOG0310 Conserved WD40 repeat- 96.4 0.093 2E-06 53.6 14.6 157 7-259 135-296 (487)
400 PRK13614 lipoprotein LpqB; Pro 96.4 0.36 7.7E-06 52.8 20.2 69 19-104 329-399 (573)
401 PF06977 SdiA-regulated: SdiA- 96.4 0.18 3.9E-06 48.9 16.0 143 157-332 44-202 (248)
402 PRK13615 lipoprotein LpqB; Pro 96.4 0.4 8.6E-06 52.2 20.0 174 19-284 319-502 (557)
403 KOG3967 Uncharacterized conser 96.4 0.022 4.7E-07 51.5 8.6 112 512-625 101-214 (297)
404 COG3204 Uncharacterized protei 96.3 0.65 1.4E-05 45.0 18.6 117 175-330 86-211 (316)
405 PF05990 DUF900: Alpha/beta hy 96.3 0.015 3.3E-07 56.2 8.2 84 581-686 75-167 (233)
406 KOG0313 Microtubule binding pr 96.3 0.21 4.6E-06 49.5 15.6 121 158-314 282-405 (423)
407 KOG0294 WD40 repeat-containing 96.3 0.44 9.6E-06 46.2 17.3 76 158-259 108-186 (362)
408 KOG1920 IkappaB kinase complex 96.3 2.6 5.6E-05 48.8 25.9 60 175-261 69-128 (1265)
409 KOG0294 WD40 repeat-containing 96.3 1.2 2.6E-05 43.4 19.9 119 157-316 63-187 (362)
410 KOG1007 WD repeat protein TSSC 96.3 0.44 9.5E-06 45.5 16.9 113 32-218 125-246 (370)
411 KOG0285 Pleiotropic regulator 96.3 1.4 2.9E-05 43.7 21.3 178 32-314 153-336 (460)
412 PF00450 Peptidase_S10: Serine 96.2 0.026 5.7E-07 60.6 10.2 148 484-637 16-182 (415)
413 KOG0650 WD40 repeat nucleolar 96.2 0.26 5.7E-06 51.8 16.3 119 157-316 546-679 (733)
414 KOG2041 WD40 repeat protein [G 96.2 0.89 1.9E-05 49.1 20.4 87 7-106 38-135 (1189)
415 KOG0269 WD40 repeat-containing 96.2 0.11 2.4E-06 56.2 14.0 182 4-283 109-295 (839)
416 KOG1551 Uncharacterized conser 96.2 0.062 1.3E-06 50.5 10.7 58 675-739 309-366 (371)
417 KOG4388 Hormone-sensitive lipa 96.1 0.0085 1.9E-07 62.3 5.6 67 673-743 788-858 (880)
418 PF15492 Nbas_N: Neuroblastoma 96.1 0.89 1.9E-05 43.7 18.4 56 35-105 2-62 (282)
419 KOG1034 Transcriptional repres 96.1 0.2 4.3E-06 48.7 14.2 84 6-104 116-199 (385)
420 KOG2111 Uncharacterized conser 96.1 0.22 4.7E-06 48.3 14.3 92 157-284 159-256 (346)
421 KOG2111 Uncharacterized conser 96.1 0.81 1.8E-05 44.5 18.0 84 59-195 156-247 (346)
422 KOG0646 WD40 repeat protein [G 96.0 0.3 6.4E-06 49.8 15.6 141 157-332 103-248 (476)
423 COG3319 Thioesterase domains o 96.0 0.018 3.9E-07 55.8 6.9 75 555-637 27-104 (257)
424 PF05057 DUF676: Putative seri 95.9 0.0065 1.4E-07 58.2 3.3 21 600-620 77-97 (217)
425 KOG0308 Conserved WD40 repeat- 95.9 0.39 8.5E-06 51.1 16.1 168 158-370 96-274 (735)
426 KOG3975 Uncharacterized conser 95.8 0.59 1.3E-05 44.0 15.2 53 582-635 92-146 (301)
427 KOG4283 Transcription-coupled 95.7 0.68 1.5E-05 44.4 15.7 90 157-259 168-263 (397)
428 KOG0290 Conserved WD40 repeat- 95.7 1.9 4.2E-05 41.4 18.5 146 175-370 151-306 (364)
429 KOG2321 WD40 repeat protein [G 95.7 0.66 1.4E-05 48.7 16.7 88 244-343 178-268 (703)
430 KOG0302 Ribosome Assembly prot 95.7 0.24 5.2E-06 49.1 12.8 131 209-370 234-366 (440)
431 COG4782 Uncharacterized protei 95.5 0.056 1.2E-06 53.8 8.2 57 579-637 171-235 (377)
432 KOG0641 WD40 repeat protein [G 95.5 1.9 4.2E-05 39.6 23.4 56 303-370 237-292 (350)
433 COG3490 Uncharacterized protei 95.5 1.4 3E-05 42.4 16.7 159 303-500 73-246 (366)
434 KOG4389 Acetylcholinesterase/B 95.5 0.024 5.2E-07 58.2 5.5 125 494-637 121-256 (601)
435 PRK13613 lipoprotein LpqB; Pro 95.4 1.1 2.3E-05 49.8 18.5 164 32-284 364-539 (599)
436 KOG2100 Dipeptidyl aminopeptid 95.4 5.4 0.00012 46.0 24.8 64 37-106 103-167 (755)
437 cd00741 Lipase Lipase. Lipase 95.4 0.049 1.1E-06 49.0 7.1 54 580-635 9-66 (153)
438 KOG2182 Hydrolytic enzymes of 95.3 0.097 2.1E-06 54.3 9.4 133 486-635 63-206 (514)
439 KOG0285 Pleiotropic regulator 95.3 3.5 7.5E-05 40.9 19.8 158 3-255 171-333 (460)
440 PF11187 DUF2974: Protein of u 95.2 0.035 7.5E-07 53.0 5.7 49 587-635 70-122 (224)
441 KOG1034 Transcriptional repres 95.2 2.2 4.8E-05 41.8 17.4 58 303-370 313-372 (385)
442 KOG2183 Prolylcarboxypeptidase 95.1 0.024 5.1E-07 57.0 4.3 57 578-634 144-200 (492)
443 KOG0646 WD40 repeat protein [G 95.0 0.67 1.5E-05 47.3 14.0 49 5-66 103-151 (476)
444 KOG0299 U3 snoRNP-associated p 95.0 4.9 0.00011 41.3 21.2 39 158-196 225-266 (479)
445 PF07519 Tannase: Tannase and 95.0 0.31 6.8E-06 52.5 12.8 67 673-741 354-429 (474)
446 KOG1214 Nidogen and related ba 94.9 1.5 3.3E-05 48.2 16.8 125 209-372 1090-1216(1289)
447 PLN02209 serine carboxypeptida 94.7 0.3 6.4E-06 52.0 11.4 62 672-737 351-433 (437)
448 PF01764 Lipase_3: Lipase (cla 94.6 0.085 1.8E-06 46.5 6.1 39 581-621 46-84 (140)
449 PRK10252 entF enterobactin syn 94.3 0.19 4.2E-06 62.9 10.6 76 551-634 1091-1169(1296)
450 COG3946 VirJ Type IV secretory 94.3 0.14 3.1E-06 51.5 7.4 78 539-624 272-349 (456)
451 COG1075 LipA Predicted acetylt 94.3 0.11 2.4E-06 53.4 7.0 49 585-635 113-163 (336)
452 PF13449 Phytase-like: Esteras 94.3 5.4 0.00012 41.0 19.4 46 62-107 112-167 (326)
453 PF13360 PQQ_2: PQQ-like domai 94.2 5.7 0.00012 38.5 21.5 55 5-75 3-59 (238)
454 TIGR03712 acc_sec_asp2 accesso 94.2 2.5 5.4E-05 44.3 16.1 55 577-637 337-391 (511)
455 COG3204 Uncharacterized protei 94.1 6.3 0.00014 38.5 17.5 107 88-261 87-199 (316)
456 PF07995 GSDH: Glucose / Sorbo 93.9 4.1 8.9E-05 41.9 17.5 84 242-330 114-213 (331)
457 COG2319 FOG: WD40 repeat [Gene 93.8 9.4 0.0002 40.2 21.5 218 5-332 87-315 (466)
458 PRK13614 lipoprotein LpqB; Pro 93.8 3.7 8.1E-05 45.1 17.6 148 158-333 366-520 (573)
459 PF04053 Coatomer_WDAD: Coatom 93.8 1.1 2.4E-05 47.7 13.3 86 186-316 117-213 (443)
460 TIGR02604 Piru_Ver_Nterm putat 93.6 5.1 0.00011 42.0 18.1 173 243-440 15-198 (367)
461 PLN03016 sinapoylglucose-malat 93.4 0.76 1.7E-05 48.9 11.5 63 672-738 347-430 (433)
462 KOG4532 WD40-like repeat conta 93.4 5.6 0.00012 38.0 15.4 82 5-104 138-221 (344)
463 PRK13615 lipoprotein LpqB; Pro 93.4 5.4 0.00012 43.7 17.8 141 158-333 356-504 (557)
464 KOG2565 Predicted hydrolases o 93.1 0.51 1.1E-05 47.1 8.7 119 490-633 132-261 (469)
465 PF03022 MRJP: Major royal jel 93.1 5.6 0.00012 39.9 16.5 65 4-80 33-106 (287)
466 PF13449 Phytase-like: Esteras 93.1 12 0.00026 38.5 21.6 148 176-332 86-252 (326)
467 PF11768 DUF3312: Protein of u 93.1 13 0.00029 39.8 19.4 139 157-332 184-330 (545)
468 COG4287 PqaA PhoPQ-activated p 93.0 0.8 1.7E-05 45.6 9.8 117 598-720 231-372 (507)
469 KOG0321 WD40 repeat-containing 93.0 10 0.00022 40.9 18.2 59 32-104 102-162 (720)
470 KOG1912 WD40 repeat protein [G 93.0 5.4 0.00012 43.9 16.5 51 32-98 17-67 (1062)
471 KOG2521 Uncharacterized conser 92.9 3.3 7.2E-05 42.1 14.4 68 672-741 225-292 (350)
472 KOG0276 Vesicle coat complex C 92.6 17 0.00037 39.2 22.8 201 3-310 33-240 (794)
473 KOG0308 Conserved WD40 repeat- 92.4 5.7 0.00012 42.8 15.6 130 157-333 140-287 (735)
474 PF03088 Str_synth: Strictosid 92.3 1.3 2.8E-05 35.0 8.5 43 153-195 33-77 (89)
475 KOG1520 Predicted alkaloid syn 92.3 4.7 0.0001 40.9 14.3 119 34-195 118-239 (376)
476 KOG1282 Serine carboxypeptidas 92.3 1.1 2.4E-05 47.4 10.5 148 484-637 49-214 (454)
477 KOG0267 Microtubule severing p 92.2 0.51 1.1E-05 50.9 7.9 79 6-104 93-172 (825)
478 PF02450 LCAT: Lecithin:choles 92.1 0.33 7.1E-06 51.2 6.7 82 545-636 69-160 (389)
479 PF06259 Abhydrolase_8: Alpha/ 92.1 1.3 2.8E-05 40.4 9.4 58 575-633 84-141 (177)
480 cd00519 Lipase_3 Lipase (class 92.1 0.37 8E-06 46.7 6.6 40 580-621 109-148 (229)
481 PLN02454 triacylglycerol lipas 92.1 0.32 7E-06 50.3 6.2 42 580-621 207-248 (414)
482 PF11288 DUF3089: Protein of u 91.9 0.43 9.4E-06 44.4 6.3 45 577-622 72-116 (207)
483 KOG0641 WD40 repeat protein [G 91.8 11 0.00023 35.0 21.2 137 157-333 163-305 (350)
484 KOG3724 Negative regulator of 91.7 0.54 1.2E-05 51.7 7.5 60 577-636 151-220 (973)
485 KOG0267 Microtubule severing p 91.7 0.76 1.6E-05 49.7 8.5 56 32-102 72-128 (825)
486 KOG2041 WD40 repeat protein [G 91.7 24 0.00052 38.8 20.4 22 27-48 11-32 (1189)
487 KOG0276 Vesicle coat complex C 91.6 23 0.00049 38.3 25.0 193 32-332 15-216 (794)
488 KOG2321 WD40 repeat protein [G 91.6 11 0.00023 40.2 16.3 115 157-308 155-282 (703)
489 TIGR03606 non_repeat_PQQ dehyd 91.4 17 0.00036 38.9 18.1 121 175-316 30-163 (454)
490 TIGR02604 Piru_Ver_Nterm putat 91.3 3.6 7.8E-05 43.2 13.4 129 158-312 48-198 (367)
491 KOG0321 WD40 repeat-containing 91.2 18 0.00038 39.2 17.6 58 307-372 281-338 (720)
492 PF04083 Abhydro_lipase: Parti 91.2 0.85 1.8E-05 33.3 5.9 45 477-521 8-52 (63)
493 PLN02408 phospholipase A1 90.8 0.42 9.2E-06 48.7 5.5 40 582-621 181-220 (365)
494 PF07995 GSDH: Glucose / Sorbo 90.7 9.9 0.00021 39.1 15.6 75 176-254 115-194 (331)
495 KOG4499 Ca2+-binding protein R 90.5 16 0.00034 34.5 16.3 128 248-408 115-247 (310)
496 KOG0270 WD40 repeat-containing 90.4 12 0.00026 38.5 14.8 142 5-224 266-411 (463)
497 PF03283 PAE: Pectinacetyleste 90.3 0.45 9.8E-06 49.1 5.3 39 582-620 137-175 (361)
498 PLN02571 triacylglycerol lipas 90.2 0.52 1.1E-05 48.8 5.6 39 583-621 208-246 (413)
499 TIGR03606 non_repeat_PQQ dehyd 90.2 29 0.00063 37.1 18.9 109 243-370 31-163 (454)
500 KOG1587 Cytoplasmic dynein int 90.1 34 0.00073 37.7 23.1 56 6-75 223-278 (555)
No 1
>COG1506 DAP2 Dipeptidyl aminopeptidases/acylaminoacyl-peptidases [Amino acid transport and metabolism]
Probab=100.00 E-value=7.7e-42 Score=377.20 Aligned_cols=573 Identities=21% Similarity=0.219 Sum_probs=375.9
Q ss_pred cccceeecCCCCeEEEEEeecccccccCCceeEEEEEcCCCCeeeccCCCCccccceeeeeEEecCCcEEEEeecCCCCC
Q 004475 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRD 111 (751)
Q Consensus 32 ~~~~p~~SPDG~~iaf~~~~~~~~~~~~~~~~l~i~~~~~g~~~~lt~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~ 111 (751)
.+..|..+|+|+.++|+...- +.........+|+.+... .+.++.+.. ...+.|||||+.++|.......
T Consensus 14 ~~~~~~~~~~~~~~~~i~~~~-~~~~~~~~~~~~~~d~~~--~~~~~~~~~------~~~~~~spdg~~~~~~~~~~~~- 83 (620)
T COG1506 14 RVSDPRVSPPGGRLAYILTGL-DFLKPLYKSSLWVSDGKT--VRLLTFGGG------VSELRWSPDGSVLAFVSTDGGR- 83 (620)
T ss_pred cccCcccCCCCceeEEeeccc-cccccccccceEEEeccc--ccccccCCc------ccccccCCCCCEEEEEeccCCC-
Confidence 477899999999999998621 111225668899977544 444444332 5678999999999998621111
Q ss_pred CCCCCCCCCCCceeeccccccccchhhhhccCCccchhhhhhheeeEEEEEcCCCCceecCCC-ceEEeeeeCCCCceEE
Q 004475 112 PPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSLDGTAKDFGTP-AVYTAVEPSPDQKYVL 190 (751)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~G~~~~lt~~-~~~~~~~~SpDG~~i~ 190 (751)
..++|+++.+| .++.. ..+....|+|+|+.++
T Consensus 84 --------------------------------------------~~~l~l~~~~g---~~~~~~~~v~~~~~~~~g~~~~ 116 (620)
T COG1506 84 --------------------------------------------VAQLYLVDVGG---LITKTAFGVSDARWSPDGDRIA 116 (620)
T ss_pred --------------------------------------------cceEEEEecCC---ceeeeecccccceeCCCCCeEE
Confidence 15889988774 33323 5667899999999999
Q ss_pred EEEecCCcccccc--------------cCCCceeEEEEeCCCceeeeeccCCCCCCCCCccCCccCCCceeeeecCCCce
Q 004475 191 ITSMHRPYSYKVP--------------CARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPST 256 (751)
Q Consensus 191 ~~~~~~~~~~~~~--------------~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~spdG~~~ 256 (751)
+............ .+.....++++|..+ .... .......+..+.++++++.
T Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~d~~~-~~~~-------------~~~~~~~~~~~~~~~~~~~- 181 (620)
T COG1506 117 FLTAEGASKRDGGDHLFVDRLPVWFDGRGGERSDLYVVDIES-KLIK-------------LGLGNLDVVSFATDGDGRL- 181 (620)
T ss_pred EEecccccccCCceeeeecccceeecCCCCcccceEEEccCc-cccc-------------ccCCCCceeeeeeCCCCce-
Confidence 9433221100000 000112334444333 1111 1111222334455555554
Q ss_pred EEEEEeccCCCCccccCcccceeeccCCCCCCCCceEeEeeceeEE-EEEecCCceEEEeeeecc----cceeEEEecCC
Q 004475 257 LYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFS-VSWCDDSLALVNETWYKT----SQTRTWLVCPG 331 (751)
Q Consensus 257 i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~-~~~spdg~~l~~~~~~~~----~~~~l~~~~~~ 331 (751)
++.......... .....++.... .+....++.....+. +.|.++|+.+++...... ....+++.+.+
T Consensus 182 ~~~~~~~~~~~~-----~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~gk~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (620)
T COG1506 182 VASIRLDDDADP-----WVTNLYVLIEG---NGELESLTPGEGSISKLAFDADGKSIALLGTESDRGLAEGDFILLLDGE 253 (620)
T ss_pred eEEeeeccccCC-----ceEeeEEEecC---CCceEEEcCCCceeeeeeeCCCCCeeEEeccCCccCccccceEEEEecc
Confidence 444332211011 11122222221 345556666666677 999999998887764332 22345555522
Q ss_pred CCCCccee-eeecccccccCCCCCCCeeeCCCCCEEEEeeeecCCcceEEEEccCCCCCCCCCceeEEEecCCCceeEEe
Q 004475 332 SKDVAPRV-LFDRVFENVYSDPGSPMMTRTSTGTNVIAKIKKENDEQIYILLNGRGFTPEGNIPFLDLFDINTGSKERIW 410 (751)
Q Consensus 332 ~~~~~~~~-l~~~~~~~~~~~~~~~~~~~spDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l~ 410 (751)
.+ .... +...+ ... +.....+.-++..++|...+. .....+...+..++. ..+.
T Consensus 254 ~~--~~d~~~~~~~--~~~---~~~~~~~~~~~~~~~~~~~~~-----------------~g~~~l~~~~~~~~~-~~~~ 308 (620)
T COG1506 254 LG--EVDGDLSSGD--DTR---GAWAVEGGLDGDGLLFIATDG-----------------GGSSPLFRVDDLGGG-VEGL 308 (620)
T ss_pred cc--ccceeeccCC--ccc---CcHHhccccCCCcEEEEEecC-----------------CCceEEEEEeccCCc-eeee
Confidence 21 1111 11111 000 000012234555566655321 111223333322222 2222
Q ss_pred eccchhhhhceeeeecCCcceeeccCCCEEEEEEecCCCCCeEEEEEcCCCceeEeecCCCCC-CCccCCceEEEEEEcC
Q 004475 411 ESNREKYFETAVALVFGQGEEDINLNQLKILTSKESKTEITQYHILSWPLKKSSQITNFPHPY-PTLASLQKEMIKYQRK 489 (751)
Q Consensus 411 ~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~l~~~~~~~g~~~~lt~~~~~~-~~~~~~~~e~i~~~~~ 489 (751)
..+. .....|+.+++.+++..+++..|+++|+.+. ++..+++...... .+....+.|.++++..
T Consensus 309 ~~~~-------------~~v~~f~~~~~~~~~~~s~~~~p~~i~~~~~--~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~ 373 (620)
T COG1506 309 SGDD-------------GGVPGFDVDGRKLALAYSSPTEPPEIYLYDR--GEEAKLTSSNNSGLKKVKLAEPEPVTYKSN 373 (620)
T ss_pred cCCC-------------ceEEEEeeCCCEEEEEecCCCCccceEEEcC--CCceEEeecccccccccccCCceEEEEEcC
Confidence 2221 1113456689999999999999999999997 5666666655443 3455678999999999
Q ss_pred CCceEEEEEEcCCCCCCCCCCCccEEEEEcCCCCcCcccCCcccCCCCccCCCCchHHHHHHhCCeEEEEcCCCCCCCCC
Q 004475 490 DGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGPSIPIIGEG 569 (751)
Q Consensus 490 ~~~~i~~~~~~P~~~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~v~~~~~~~~~g~g 569 (751)
+|.+|.+++++|.++++.++ +|+||++||||....+ .......+.|+++||+|+.+++++..|+|
T Consensus 374 dG~~i~~~l~~P~~~~~~k~--yP~i~~~hGGP~~~~~-------------~~~~~~~q~~~~~G~~V~~~n~RGS~GyG 438 (620)
T COG1506 374 DGETIHGWLYKPPGFDPRKK--YPLIVYIHGGPSAQVG-------------YSFNPEIQVLASAGYAVLAPNYRGSTGYG 438 (620)
T ss_pred CCCEEEEEEecCCCCCCCCC--CCEEEEeCCCCccccc-------------cccchhhHHHhcCCeEEEEeCCCCCCccH
Confidence 99999999999999877654 9999999999743211 12235677889999999999999999998
Q ss_pred CCCCC---chhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEccCCCCCCCCccCcc
Q 004475 570 DKLPN---DRFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGSYNKTLTPFGFQ 646 (751)
Q Consensus 570 ~~~~~---~~~~~~~~~d~~~~v~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~~d~~~~~~~~~ 646 (751)
..+.. ..+.....+|+.++++++.+.+.+|++||+|+|+|+||+|+++++.+.| .|+++++..+.+++........
T Consensus 439 ~~F~~~~~~~~g~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~SyGGymtl~~~~~~~-~f~a~~~~~~~~~~~~~~~~~~ 517 (620)
T COG1506 439 REFADAIRGDWGGVDLEDLIAAVDALVKLPLVDPERIGITGGSYGGYMTLLAATKTP-RFKAAVAVAGGVDWLLYFGEST 517 (620)
T ss_pred HHHHHhhhhccCCccHHHHHHHHHHHHhCCCcChHHeEEeccChHHHHHHHHHhcCc-hhheEEeccCcchhhhhccccc
Confidence 86433 2234456899999999999999999999999999999999999999997 8888888888766443322211
Q ss_pred cc--------cccchhhHHHHHhcCcccccCCCCCCEEEEEcCCCCCCCCChHHHHHHHHHHHhCCCcEEEEEeCCCCCc
Q 004475 647 TE--------FRTLWEATNVYIEMSPITHANKIKKPILIIHGEVDDKVGLFPMQAERFFDALKGHGALSRLVLLPFEHHV 718 (751)
Q Consensus 647 ~~--------~~~~~~~~~~~~~~~~~~~~~~~~~P~li~~G~~D~~vp~~~~~~~~~~~~l~~~~~~~~~~~~~~~~H~ 718 (751)
.. ...++.+.+.|...+|+.+++++++|+|+|||++|..|| .+++++++++|+.+|+++++++||+++|.
T Consensus 518 ~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~P~LliHG~~D~~v~--~~q~~~~~~aL~~~g~~~~~~~~p~e~H~ 595 (620)
T COG1506 518 EGLRFDPEENGGGPPEDREKYEDRSPIFYADNIKTPLLLIHGEEDDRVP--IEQAEQLVDALKRKGKPVELVVFPDEGHG 595 (620)
T ss_pred hhhcCCHHHhCCCcccChHHHHhcChhhhhcccCCCEEEEeecCCccCC--hHHHHHHHHHHHHcCceEEEEEeCCCCcC
Confidence 11 111111577899999999999999999999999999999 99999999999999999999999999999
Q ss_pred CCccccHHHHHHHHHHHHHHHhcC
Q 004475 719 YAARENVMHVIWETDRWLQKYCLS 742 (751)
Q Consensus 719 ~~~~~~~~~~~~~~~~fl~~~l~~ 742 (751)
+...++....++++++||+++++.
T Consensus 596 ~~~~~~~~~~~~~~~~~~~~~~~~ 619 (620)
T COG1506 596 FSRPENRVKVLKEILDWFKRHLKQ 619 (620)
T ss_pred CCCchhHHHHHHHHHHHHHHHhcC
Confidence 998788889999999999999864
No 2
>PRK10115 protease 2; Provisional
Probab=100.00 E-value=5.8e-38 Score=347.61 Aligned_cols=566 Identities=14% Similarity=0.064 Sum_probs=364.5
Q ss_pred CCCCeEEEEEeecccccccCCceeEEEEEcC-C---CCeeeccCCCCc---cccceeeeeEEecCCcEEEEeecCCCCCC
Q 004475 40 PDGKRIAFSVRVDEEDNVSSCKLRVWIADAE-T---GEAKPLFESPDI---CLNAVFGSFVWVNNSTLLIFTIPSSRRDP 112 (751)
Q Consensus 40 PDG~~iaf~~~~~~~~~~~~~~~~l~i~~~~-~---g~~~~lt~~~~~---~~~~~~~~~~wspDg~~l~~~~~~~~~~~ 112 (751)
..|.+++|..... ....-||..... + ++.+.|.+.... .-...+..+.|||||++|+|.......
T Consensus 79 ~~g~~~y~~~~~~------g~~~~~~~r~~~~~~~~~~~~~llD~n~~a~~~~~~~l~~~~~Spdg~~la~~~d~~G~-- 150 (686)
T PRK10115 79 IKNGYRYRHIYEP------GCEYAIYQRQSAFSEEWDEWETLLDANKRAAHSEFYTLGGMAITPDNTIMALAEDFLSR-- 150 (686)
T ss_pred EECCEEEEEEEcC------CCccEEEEEecCCCCCCCCCEEEEcchhhccCCCcEEEeEEEECCCCCEEEEEecCCCc--
Confidence 4577888876421 223455544432 2 223444332211 001235678999999999998543222
Q ss_pred CCCCCCCCCCceeeccccccccchhhhhccCCccchhhhhhheeeEEEEEcC-CCC--ceecCCCceEEeeeeCCCCceE
Q 004475 113 PKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DGT--AKDFGTPAVYTAVEPSPDQKYV 189 (751)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~G~--~~~lt~~~~~~~~~~SpDG~~i 189 (751)
...+|+++++ +|+ ...+.... ..++|++||+.|
T Consensus 151 ------------------------------------------E~~~l~v~d~~tg~~l~~~i~~~~--~~~~w~~D~~~~ 186 (686)
T PRK10115 151 ------------------------------------------RQYGIRFRNLETGNWYPELLDNVE--PSFVWANDSWTF 186 (686)
T ss_pred ------------------------------------------EEEEEEEEECCCCCCCCccccCcc--eEEEEeeCCCEE
Confidence 2268999999 775 33333212 458999999999
Q ss_pred EEEEecCCcccccccCCCceeEEEEeCCCc--eeeeeccCCCCCCCCCccCCccCCCceeeeecCCCceEEEEEeccCCC
Q 004475 190 LITSMHRPYSYKVPCARFSQKVQVWTTDGK--LVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGD 267 (751)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~--~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~spdG~~~i~~~~~~~~~~ 267 (751)
+|+..... .....++|++++.++ +.+.|........ . -....+.|+++ +++....
T Consensus 187 ~y~~~~~~-------~~~~~~v~~h~lgt~~~~d~lv~~e~~~~~----------~-~~~~~s~d~~~-l~i~~~~---- 243 (686)
T PRK10115 187 YYVRKHPV-------TLLPYQVWRHTIGTPASQDELVYEEKDDTF----------Y-VSLHKTTSKHY-VVIHLAS---- 243 (686)
T ss_pred EEEEecCC-------CCCCCEEEEEECCCChhHCeEEEeeCCCCE----------E-EEEEEcCCCCE-EEEEEEC----
Confidence 99887421 012468999999887 4444433211100 0 02223448888 4443211
Q ss_pred CccccCcccceeeccCCCCCCCCceEeEeeceeEEEEEecCCceEEEeeeecccceeEEEecCCCCCCcceeeeecccc-
Q 004475 268 ANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFSVSWCDDSLALVNETWYKTSQTRTWLVCPGSKDVAPRVLFDRVFE- 346 (751)
Q Consensus 268 ~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~- 346 (751)
.....+++++.+.. .+....+..............+..|++.++.......|..+++.+. ...+.+......
T Consensus 244 -----~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ly~~tn~~~~~~~l~~~~~~~~-~~~~~l~~~~~~~ 316 (686)
T PRK10115 244 -----ATTSEVLLLDAELA-DAEPFVFLPRRKDHEYSLDHYQHRFYLRSNRHGKNFGLYRTRVRDE-QQWEELIPPRENI 316 (686)
T ss_pred -----CccccEEEEECcCC-CCCceEEEECCCCCEEEEEeCCCEEEEEEcCCCCCceEEEecCCCc-ccCeEEECCCCCC
Confidence 12235666664211 2233444433322221112334667777766555678888888742 334455443211
Q ss_pred cccCCCCCCCeeeCCCCCEEEEeeeecCCcceEEEEccCCCCCCCCCceeEEEecCCCceeEEe-eccchhhhhceeeee
Q 004475 347 NVYSDPGSPMMTRTSTGTNVIAKIKKENDEQIYILLNGRGFTPEGNIPFLDLFDINTGSKERIW-ESNREKYFETAVALV 425 (751)
Q Consensus 347 ~~~~~~~~~~~~~spDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l~-~~~~~~~~~~~~~~~ 425 (751)
.+.. +.++ ++.|++...+ .....|+++++.+++...|. .... .....
T Consensus 317 ~i~~------~~~~--~~~l~~~~~~------------------~g~~~l~~~~~~~~~~~~l~~~~~~------~~~~~ 364 (686)
T PRK10115 317 MLEG------FTLF--TDWLVVEERQ------------------RGLTSLRQINRKTREVIGIAFDDPA------YVTWI 364 (686)
T ss_pred EEEE------EEEE--CCEEEEEEEe------------------CCEEEEEEEcCCCCceEEecCCCCc------eEeee
Confidence 1111 3344 4566666632 23446888888766555553 1111 11111
Q ss_pred cCCcceeeccCCCEEEEEEecCCCCCeEEEEEcCCCceeEeecCCCCCCCccCCceEEEEEEcCCCceEEEEEEcCCCCC
Q 004475 426 FGQGEEDINLNQLKILTSKESKTEITQYHILSWPLKKSSQITNFPHPYPTLASLQKEMIKYQRKDGVPLTATLYLPPGYD 505 (751)
Q Consensus 426 ~~~~~~~~s~dg~~l~~~~~~~~~~~~l~~~~~~~g~~~~lt~~~~~~~~~~~~~~e~i~~~~~~~~~i~~~~~~P~~~~ 505 (751)
. .+.+++++.+++..+++..|+.+|.+|+.+++.+.|+.......+...+.+|++.+++.+|.+|+++++.++...
T Consensus 365 ~----~~~~~~~~~~~~~~ss~~~P~~~y~~d~~~~~~~~l~~~~~~~~~~~~~~~e~v~~~s~DG~~Ip~~l~~~~~~~ 440 (686)
T PRK10115 365 A----YNPEPETSRLRYGYSSMTTPDTLFELDMDTGERRVLKQTEVPGFDAANYRSEHLWITARDGVEVPVSLVYHRKHF 440 (686)
T ss_pred c----ccCCCCCceEEEEEecCCCCCEEEEEECCCCcEEEEEecCCCCcCccccEEEEEEEECCCCCEEEEEEEEECCCC
Confidence 0 123367889999999999999999999999888888876533223335689999999999999999766654422
Q ss_pred CCCCCCccEEEEEcCCCCcCcccCCcccCCCCccCCCCchHHHHHHhCCeEEEEcCCCCCCCCCCCCCCch---hHHHHH
Q 004475 506 QSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGPSIPIIGEGDKLPNDR---FVEQLV 582 (751)
Q Consensus 506 ~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~v~~~~~~~~~g~g~~~~~~~---~~~~~~ 582 (751)
. .++.|+||++|||+..+ +...+....+.|+++||+|+.++.+++.|+|+...... ......
T Consensus 441 ~--~~~~P~ll~~hGg~~~~-------------~~p~f~~~~~~l~~rG~~v~~~n~RGs~g~G~~w~~~g~~~~k~~~~ 505 (686)
T PRK10115 441 R--KGHNPLLVYGYGSYGAS-------------IDADFSFSRLSLLDRGFVYAIVHVRGGGELGQQWYEDGKFLKKKNTF 505 (686)
T ss_pred C--CCCCCEEEEEECCCCCC-------------CCCCccHHHHHHHHCCcEEEEEEcCCCCccCHHHHHhhhhhcCCCcH
Confidence 2 23479999999976322 11112244568899999999999999999987533211 112458
Q ss_pred HHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEccCCCCCCCC------c--cCcccccccchh
Q 004475 583 SSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGSYNKTLT------P--FGFQTEFRTLWE 654 (751)
Q Consensus 583 ~d~~~~v~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~~d~~~~------~--~~~~~~~~~~~~ 654 (751)
+|+.+++++|.+++.+|++|++++|.|+||+|+..++.++|++|+|+|+..|++|+... + .....+.+.++.
T Consensus 506 ~D~~a~~~~Lv~~g~~d~~rl~i~G~S~GG~l~~~~~~~~Pdlf~A~v~~vp~~D~~~~~~~~~~p~~~~~~~e~G~p~~ 585 (686)
T PRK10115 506 NDYLDACDALLKLGYGSPSLCYGMGGSAGGMLMGVAINQRPELFHGVIAQVPFVDVVTTMLDESIPLTTGEFEEWGNPQD 585 (686)
T ss_pred HHHHHHHHHHHHcCCCChHHeEEEEECHHHHHHHHHHhcChhheeEEEecCCchhHhhhcccCCCCCChhHHHHhCCCCC
Confidence 99999999999999999999999999999999999999999999999999999885421 1 111122344442
Q ss_pred h--HHHHHhcCcccccCCCCCC-EEEEEcCCCCCCCCChHHHHHHHHHHHhCCCcEEEEEe---CCCCCcCCccccHHHH
Q 004475 655 A--TNVYIEMSPITHANKIKKP-ILIIHGEVDDKVGLFPMQAERFFDALKGHGALSRLVLL---PFEHHVYAARENVMHV 728 (751)
Q Consensus 655 ~--~~~~~~~~~~~~~~~~~~P-~li~~G~~D~~vp~~~~~~~~~~~~l~~~~~~~~~~~~---~~~~H~~~~~~~~~~~ 728 (751)
. .+.+..+||+.++++++.| +||+||++|.+|| +.++.+++++|++.+.+++++++ +++||+. .......
T Consensus 586 ~~~~~~l~~~SP~~~v~~~~~P~lLi~~g~~D~RV~--~~~~~k~~a~Lr~~~~~~~~vl~~~~~~~GHg~--~~~r~~~ 661 (686)
T PRK10115 586 PQYYEYMKSYSPYDNVTAQAYPHLLVTTGLHDSQVQ--YWEPAKWVAKLRELKTDDHLLLLCTDMDSGHGG--KSGRFKS 661 (686)
T ss_pred HHHHHHHHHcCchhccCccCCCceeEEecCCCCCcC--chHHHHHHHHHHhcCCCCceEEEEecCCCCCCC--CcCHHHH
Confidence 2 3445679999999999989 6788999999999 99999999999999988888888 9999984 3333333
Q ss_pred ---HHHHHHHHHHHhcC
Q 004475 729 ---IWETDRWLQKYCLS 742 (751)
Q Consensus 729 ---~~~~~~fl~~~l~~ 742 (751)
......|+-..+..
T Consensus 662 ~~~~A~~~aFl~~~~~~ 678 (686)
T PRK10115 662 YEGVAMEYAFLIALAQG 678 (686)
T ss_pred HHHHHHHHHHHHHHhCC
Confidence 33457888777764
No 3
>KOG2100 consensus Dipeptidyl aminopeptidase [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=2.8e-27 Score=262.51 Aligned_cols=393 Identities=22% Similarity=0.239 Sum_probs=264.8
Q ss_pred EEEecCCceEEEee-eecccceeEEEecCCCCCCcceeeeecccccccCCCCCCCeeeCCCCCEEEEeeeecCCcceEEE
Q 004475 303 VSWCDDSLALVNET-WYKTSQTRTWLVCPGSKDVAPRVLFDRVFENVYSDPGSPMMTRTSTGTNVIAKIKKENDEQIYIL 381 (751)
Q Consensus 303 ~~~spdg~~l~~~~-~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~spDG~~l~~~~~~~~~~~~~~~ 381 (751)
+.++.|+....+.. .......++.......+ +.++.++.+...-... +.++.|.+.++|.+..
T Consensus 345 ~~~~~d~~~~~~~~~~~~~~~~hi~~~~~~~~-~~~~~lt~g~w~v~~i------~~~~~~~~~i~f~~~~--------- 408 (755)
T KOG2100|consen 345 PVFSSDGSSYLKVDSVSDGGYNHIAYLKLSNG-SEPRMLTSGNWEVTSI------LGYDKDSNRIYFDAYE--------- 408 (755)
T ss_pred ceEeecCCceeEEEeeccCCEEEEEEEEcCCC-CccccccccceEEEEe------ccccCCCceEEEEecC---------
Confidence 56777765443333 22222466766666664 3445555544332111 4466788888888732
Q ss_pred EccCCCCCCCCCceeEEEecCCCceeEEeeccchhhhhceeeeecCCcceeeccCCCEEEEEEecCCCCCe-EEEEEcCC
Q 004475 382 LNGRGFTPEGNIPFLDLFDINTGSKERIWESNREKYFETAVALVFGQGEEDINLNQLKILTSKESKTEITQ-YHILSWPL 460 (751)
Q Consensus 382 ~~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~-l~~~~~~~ 460 (751)
......+|+.+++.++....++..... ....+. ...++...+.++.....+..|-. +-+.....
T Consensus 409 -------~~~~~~~ly~i~~~~~~~~~lt~~~~~----~~~~~~----~~~~~~~~~~~v~~~~gP~~p~~~~~~~~~~~ 473 (755)
T KOG2100|consen 409 -------EDPSERHLYSISLGSGTVESLTCSLIT----GPCTYL----SVSFSKSAKYYVLSCSGPKVPDGQLTRHSSKN 473 (755)
T ss_pred -------CCCCceEEEEEEccccccccccccCCC----CcceEE----EEecCCcccEEEEEccCCCCCcceeecccccc
Confidence 124567899999988776665443321 011111 14566777778877777665532 22222111
Q ss_pred Cc-eeEeecCCCCCC----CccCCceEEEEEEcCCCceEEEEEEcCCCCCCCCCCCccEEEEEcCCCCcCcccCCcccCC
Q 004475 461 KK-SSQITNFPHPYP----TLASLQKEMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGS 535 (751)
Q Consensus 461 g~-~~~lt~~~~~~~----~~~~~~~e~i~~~~~~~~~i~~~~~~P~~~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~ 535 (751)
-+ ...|. .+.... .......+..++.. +|....+.+.+|+++.+.+ ++|+||.+|||+.. +.+..
T Consensus 474 ~~~~~~Le-~n~~~~~~~~~~~~p~~~~~~i~~-~~~~~~~~~~lP~~~~~~~--kyPllv~~yGGP~s-----q~v~~- 543 (755)
T KOG2100|consen 474 SKTIVVLE-TNEELKKTIENVALPIVEFGKIEI-DGITANAILILPPNFDPSK--KYPLLVVVYGGPGS-----QSVTS- 543 (755)
T ss_pred ceEEEEec-cChhhHHHhhcccCCcceeEEEEe-ccEEEEEEEecCCCCCCCC--CCCEEEEecCCCCc-----ceeee-
Confidence 11 11111 111111 11112223333332 7888999999999988766 59999999998731 11111
Q ss_pred CCccCCCCchHHHHHHhCCeEEEEcCCCCCCCCCCCCC---CchhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHH
Q 004475 536 PNEFSGMTPTSSLIFLARRFAVLAGPSIPIIGEGDKLP---NDRFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGA 612 (751)
Q Consensus 536 ~~~~~~~~~~~~~~~~~~G~~v~~~~~~~~~g~g~~~~---~~~~~~~~~~d~~~~v~~l~~~~~id~~~i~l~G~S~GG 612 (751)
.+ .. .+....+..+|++|+.+|+++..|+|.... ........++|...+++++.+++.+|++||+|+|+|+||
T Consensus 544 --~~-~~-~~~~~~~s~~g~~v~~vd~RGs~~~G~~~~~~~~~~lG~~ev~D~~~~~~~~~~~~~iD~~ri~i~GwSyGG 619 (755)
T KOG2100|consen 544 --KF-SV-DWNEVVVSSRGFAVLQVDGRGSGGYGWDFRSALPRNLGDVEVKDQIEAVKKVLKLPFIDRSRVAIWGWSYGG 619 (755)
T ss_pred --eE-Ee-cHHHHhhccCCeEEEEEcCCCcCCcchhHHHHhhhhcCCcchHHHHHHHHHHHhcccccHHHeEEeccChHH
Confidence 11 11 122335567999999988888888877632 223334568999999999999999999999999999999
Q ss_pred HHHHHHHHhCC-CceeEEEEccCCCCCCCCccCccccc-ccchhhHHHHHhcCcccccCCCCCCE-EEEEcCCCCCCCCC
Q 004475 613 FMTAHLLAHAP-HLFCCGIARSGSYNKTLTPFGFQTEF-RTLWEATNVYIEMSPITHANKIKKPI-LIIHGEVDDKVGLF 689 (751)
Q Consensus 613 ~~a~~~a~~~p-~~~~~~v~~~~~~d~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~P~-li~~G~~D~~vp~~ 689 (751)
+++++++.++| +.|+|+++.+|++|+........... +.+......|.+.++..++..++.|. |++||+.|..|+
T Consensus 620 y~t~~~l~~~~~~~fkcgvavaPVtd~~~yds~~terymg~p~~~~~~y~e~~~~~~~~~~~~~~~LliHGt~DdnVh-- 697 (755)
T KOG2100|consen 620 YLTLKLLESDPGDVFKCGVAVAPVTDWLYYDSTYTERYMGLPSENDKGYEESSVSSPANNIKTPKLLLIHGTEDDNVH-- 697 (755)
T ss_pred HHHHHHhhhCcCceEEEEEEecceeeeeeecccccHhhcCCCccccchhhhccccchhhhhccCCEEEEEcCCcCCcC--
Confidence 99999999998 67888899999999774332222222 33444445588889999999888776 999999999998
Q ss_pred hHHHHHHHHHHHhCCCcEEEEEeCCCCCcCCccccHHHHHHHHHHHHHHHhcC
Q 004475 690 PMQAERFFDALKGHGALSRLVLLPFEHHVYAARENVMHVIWETDRWLQKYCLS 742 (751)
Q Consensus 690 ~~~~~~~~~~l~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~fl~~~l~~ 742 (751)
++++.+++++|+.+|+++++.+||+.+|.+.......+.+..+..||..++..
T Consensus 698 ~q~s~~~~~aL~~~gv~~~~~vypde~H~is~~~~~~~~~~~~~~~~~~~~~~ 750 (755)
T KOG2100|consen 698 FQQSAILIKALQNAGVPFRLLVYPDENHGISYVEVISHLYEKLDRFLRDCFGS 750 (755)
T ss_pred HHHHHHHHHHHHHCCCceEEEEeCCCCcccccccchHHHHHHHHHHHHHHcCc
Confidence 99999999999999999999999999999988787889999999999966653
No 4
>KOG2281 consensus Dipeptidyl aminopeptidases/acylaminoacyl-peptidases [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=7.9e-28 Score=242.35 Aligned_cols=323 Identities=19% Similarity=0.233 Sum_probs=233.2
Q ss_pred CCCceeEEEecC-CCceeEEeeccchhhhhceeeeecCCcceeeccCCCEEEEEEecCCCCCeEEEEEcCCCceeEeecC
Q 004475 391 GNIPFLDLFDIN-TGSKERIWESNREKYFETAVALVFGQGEEDINLNQLKILTSKESKTEITQYHILSWPLKKSSQITNF 469 (751)
Q Consensus 391 ~~~~~l~~~d~~-~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~l~~~~~~~g~~~~lt~~ 469 (751)
....+||+.... .|+..+++...- .. .+.++-+=+.++...++-..|+.+.+..+..++...+...
T Consensus 527 PlE~hLyvvsye~~g~~~rlt~~g~-------sh------~~~l~~~~d~fv~~~~sv~sP~cv~~y~ls~~~~~~l~~q 593 (867)
T KOG2281|consen 527 PLEHHLYVVSYENPGEIARLTEPGY-------SH------SCELDQQCDHFVSYYSSVGSPPCVSLYSLSWPENDPLPKQ 593 (867)
T ss_pred CceeeEEEEEEecCCceeeccCCCc-------cc------chhhhhhhhhHhhhhhcCCCCceEEEEeccCCccCcccch
Confidence 356689988887 788877754321 00 0122333344555566666777777777655432222111
Q ss_pred C--------CCCCCccCCceEEEEEEcCCCceEEEEEEcCCCCCCCCCCCccEEEEEcCCCCcCcccCCcccCCCCccCC
Q 004475 470 P--------HPYPTLASLQKEMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSG 541 (751)
Q Consensus 470 ~--------~~~~~~~~~~~e~i~~~~~~~~~i~~~~~~P~~~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~~~~~~ 541 (751)
. ...+..+-...|-|.|.+..|..+.|.+|.|.+++++++ +|+|++++|||.. |+ --+.|.+
T Consensus 594 ~~~~~~l~~~~~~~Pdy~p~eif~fqs~tg~~lYgmiyKPhn~~pgkk--Yptvl~VYGGP~V------Ql--Vnnsfkg 663 (867)
T KOG2281|consen 594 VSFWAILVSGAPPPPDYVPPEIFSFQSKTGLTLYGMIYKPHNFQPGKK--YPTVLNVYGGPGV------QL--VNNSFKG 663 (867)
T ss_pred hhHHHHHHhcCCCCCccCChhheeeecCCCcEEEEEEEccccCCCCCC--CceEEEEcCCCce------EE--eeccccc
Confidence 1 011112223447788888888899999999999998875 9999999999732 22 2366776
Q ss_pred CCchHHHHHHhCCeEEEEcCCCCCCCCCCCCCC---chhHHHHHHHHHHHHHHHHHcC-CCCCCcEEEEEeChHHHHHHH
Q 004475 542 MTPTSSLIFLARRFAVLAGPSIPIIGEGDKLPN---DRFVEQLVSSAEAAVEEVVRRG-VADPSRIAVGGHSYGAFMTAH 617 (751)
Q Consensus 542 ~~~~~~~~~~~~G~~v~~~~~~~~~g~g~~~~~---~~~~~~~~~d~~~~v~~l~~~~-~id~~~i~l~G~S~GG~~a~~ 617 (751)
........|+++||+|+.+|.++..-.|..+.. .....-.++|..+.+++|.++. .+|.+||+|.|+|+||+|+++
T Consensus 664 i~ylR~~~LaslGy~Vv~IDnRGS~hRGlkFE~~ik~kmGqVE~eDQVeglq~Laeq~gfidmdrV~vhGWSYGGYLSlm 743 (867)
T KOG2281|consen 664 IQYLRFCRLASLGYVVVFIDNRGSAHRGLKFESHIKKKMGQVEVEDQVEGLQMLAEQTGFIDMDRVGVHGWSYGGYLSLM 743 (867)
T ss_pred eehhhhhhhhhcceEEEEEcCCCccccchhhHHHHhhccCeeeehhhHHHHHHHHHhcCcccchheeEeccccccHHHHH
Confidence 666667789999999999666655544443211 1122344799999999999984 899999999999999999999
Q ss_pred HHHhCCCceeEEEEccCCCCCCCCccCccccc-ccchhhHHHHHhcCcccccCCCC---CCEEEEEcCCCCCCCCChHHH
Q 004475 618 LLAHAPHLFCCGIARSGSYNKTLTPFGFQTEF-RTLWEATNVYIEMSPITHANKIK---KPILIIHGEVDDKVGLFPMQA 693 (751)
Q Consensus 618 ~a~~~p~~~~~~v~~~~~~d~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~---~P~li~~G~~D~~vp~~~~~~ 693 (751)
+++++|+.|+++|+.+|+.++.....++.... +.+-.....|..-+...++.++. ..+|++||.-|..|. +.+.
T Consensus 744 ~L~~~P~IfrvAIAGapVT~W~~YDTgYTERYMg~P~~nE~gY~agSV~~~VeklpdepnRLlLvHGliDENVH--F~Ht 821 (867)
T KOG2281|consen 744 GLAQYPNIFRVAIAGAPVTDWRLYDTGYTERYMGYPDNNEHGYGAGSVAGHVEKLPDEPNRLLLVHGLIDENVH--FAHT 821 (867)
T ss_pred HhhcCcceeeEEeccCcceeeeeecccchhhhcCCCccchhcccchhHHHHHhhCCCCCceEEEEecccccchh--hhhH
Confidence 99999999999999999988766554443222 22223334455556656666552 449999999999998 9999
Q ss_pred HHHHHHHHhCCCcEEEEEeCCCCCcCCccccHHHHHHHHHHHHHH
Q 004475 694 ERFFDALKGHGALSRLVLLPFEHHVYAARENVMHVIWETDRWLQK 738 (751)
Q Consensus 694 ~~~~~~l~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~fl~~ 738 (751)
-.+..+|.++|++.++++||+..|.+...+....+-.+++.|+++
T Consensus 822 s~Lvs~lvkagKpyeL~IfP~ERHsiR~~es~~~yE~rll~FlQ~ 866 (867)
T KOG2281|consen 822 SRLVSALVKAGKPYELQIFPNERHSIRNPESGIYYEARLLHFLQE 866 (867)
T ss_pred HHHHHHHHhCCCceEEEEccccccccCCCccchhHHHHHHHHHhh
Confidence 999999999999999999999999998888888888889999976
No 5
>COG1770 PtrB Protease II [Amino acid transport and metabolism]
Probab=99.96 E-value=1.4e-24 Score=222.87 Aligned_cols=548 Identities=14% Similarity=0.090 Sum_probs=340.8
Q ss_pred cCCCCeEEEEEeecccccccCCceeEEEE-EcCCCC-eeeccCCCCccc---cceeeeeEEecCCcEEEEeecCCCCCCC
Q 004475 39 SPDGKRIAFSVRVDEEDNVSSCKLRVWIA-DAETGE-AKPLFESPDICL---NAVFGSFVWVNNSTLLIFTIPSSRRDPP 113 (751)
Q Consensus 39 SPDG~~iaf~~~~~~~~~~~~~~~~l~i~-~~~~g~-~~~lt~~~~~~~---~~~~~~~~wspDg~~l~~~~~~~~~~~~ 113 (751)
..+|.+-+|.+... ....-+|.. ...++. .+.|.+...... ...+..++-|||++.|++.-.....
T Consensus 82 ~~~~~~~Yy~r~~~------g~~y~~~~R~~~~g~~~eevlLD~n~~A~g~~f~~Lg~~~~s~D~~~la~s~D~~G~--- 152 (682)
T COG1770 82 YRKGPYEYYSRTEE------GKEYPIYCRQPDEGGEGEEVLLDVNKEAEGHDFFSLGAASISPDHNLLAYSVDVLGD--- 152 (682)
T ss_pred cccCCeeEEEEecC------CCcceeEEeccCCCCCceeEeecchhccCcccceeeeeeeeCCCCceEEEEEecccc---
Confidence 45677777765421 122233333 233433 444444322110 1124577889999999998543221
Q ss_pred CCCCCCCCCceeeccccccccchhhhhccCCccchhhhhhheeeEEEEEcC-CCCc--eecCCCceEEeeeeCCCCceEE
Q 004475 114 KKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DGTA--KDFGTPAVYTAVEPSPDQKYVL 190 (751)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~G~~--~~lt~~~~~~~~~~SpDG~~i~ 190 (751)
....|.+.|+ +|+. ..++ ....+++|.+||+.++
T Consensus 153 -----------------------------------------e~y~lr~kdL~tg~~~~d~i~--~~~~~~~Wa~d~~~lf 189 (682)
T COG1770 153 -----------------------------------------EQYTLRFKDLATGEELPDEIT--NTSGSFAWAADGKTLF 189 (682)
T ss_pred -----------------------------------------cEEEEEEEecccccccchhhc--ccccceEEecCCCeEE
Confidence 1256788888 7742 2222 2355799999999999
Q ss_pred EEEecCCcccccccCCCceeEEEEeCCC--ceeeeeccCCCCCCCCCccCCccCCCceeeeecCCCceEEEEEeccCCCC
Q 004475 191 ITSMHRPYSYKVPCARFSQKVQVWTTDG--KLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDA 268 (751)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~l~~~d~~~--~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~spdG~~~i~~~~~~~~~~~ 268 (751)
|++.+... ....++...+.+ .+-+.+...+-... .-.+.=|...++ |++..
T Consensus 190 Yt~~d~~~--------rp~kv~~h~~gt~~~~d~lvyeE~d~~f-----------~~~v~~s~s~~y-i~i~~------- 242 (682)
T COG1770 190 YTRLDENH--------RPDKVWRHRLGTPGSSDELVYEEKDDRF-----------FLSVGRSRSEAY-IVISL------- 242 (682)
T ss_pred EEEEcCCC--------CcceEEEEecCCCCCcceEEEEcCCCcE-----------EEEeeeccCCce-EEEEc-------
Confidence 99876421 246677777766 44444433221111 012233444455 33321
Q ss_pred ccccCcccceeeccCCCCCCCCceEeEeeceeEEEEEecCCceEEEeeeecccceeEEEecCCCCCCcceeeeecccccc
Q 004475 269 NVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFSVSWCDDSLALVNETWYKTSQTRTWLVCPGSKDVAPRVLFDRVFENV 348 (751)
Q Consensus 269 ~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~ 348 (751)
......++++++.+ ..+..++.+......+......-|..+++.+|..+.+-.|+...........+.+..+.....
T Consensus 243 --~~~~tsE~~ll~a~-~p~~~p~vv~pr~~g~eY~~eh~~d~f~i~sN~~gknf~l~~ap~~~~~~~w~~~I~h~~~~~ 319 (682)
T COG1770 243 --GSHITSEVRLLDAD-DPEAEPKVVLPRENGVEYSVEHGGDRFYILSNADGKNFKLVRAPVSADKSNWRELIPHREDVR 319 (682)
T ss_pred --CCCcceeEEEEecC-CCCCceEEEEEcCCCcEEeeeecCcEEEEEecCCCcceEEEEccCCCChhcCeeeeccCCCce
Confidence 11233588898885 334556666554433321222337778887876665667877776221122333333322211
Q ss_pred cCCCCCCCeeeCCCCCEEEEeeeecCCcceEEEEccCCCCCCCCCceeEEEecCCCceeEEeeccchhhhhceeeeecCC
Q 004475 349 YSDPGSPMMTRTSTGTNVIAKIKKENDEQIYILLNGRGFTPEGNIPFLDLFDINTGSKERIWESNREKYFETAVALVFGQ 428 (751)
Q Consensus 349 ~~~~~~~~~~~spDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~~ 428 (751)
. -.++-=..+|+... +....++|++++.++++...+.-.+.. + ...+.
T Consensus 320 l-------~~~~~f~~~lVl~e------------------R~~glp~v~v~~~~~~~~~~i~f~~~a-y---~~~l~--- 367 (682)
T COG1770 320 L-------EGVDLFADHLVLLE------------------RQEGLPRVVVRDRKTGEERGIAFDDEA-Y---SAGLS--- 367 (682)
T ss_pred e-------eeeeeeccEEEEEe------------------cccCCceEEEEecCCCceeeEEecchh-h---hcccc---
Confidence 1 12333344555544 123456899999988887665333321 1 11111
Q ss_pred cceeeccCCCEEEEEEecCCCCCeEEEEEcCCCceeEeecCCCCC-CCccCCceEEEEEEcCCCceEEEEEEcCCCCCCC
Q 004475 429 GEEDINLNQLKILTSKESKTEITQYHILSWPLKKSSQITNFPHPY-PTLASLQKEMIKYQRKDGVPLTATLYLPPGYDQS 507 (751)
Q Consensus 429 ~~~~~s~dg~~l~~~~~~~~~~~~l~~~~~~~g~~~~lt~~~~~~-~~~~~~~~e~i~~~~~~~~~i~~~~~~P~~~~~~ 507 (751)
.+-.+++..|.+.+++.+.|.+++.+|+.+++.+.|-+..-+. .+...+..+++..+..+|..|+..|+.-.+..
T Consensus 368 --~~~e~~s~~lR~~ysS~ttP~~~~~~dm~t~er~~LkqqeV~~g~dp~~Y~s~riwa~a~dgv~VPVSLvyrkd~~-- 443 (682)
T COG1770 368 --GNPEFDSDRLRYSYSSMTTPATLFDYDMATGERTLLKQQEVPGGFDPEDYVSRRIWATADDGVQVPVSLVYRKDTK-- 443 (682)
T ss_pred --CCCCCCCccEEEEeecccccceeEEeeccCCcEEEEEeccCCCCCChhHeEEEEEEEEcCCCcEeeEEEEEecccC--
Confidence 2345678899999999999999999999999988887765443 35566789999999899999999999876522
Q ss_pred CCCCccEEEEEcCCCCcCcccCCcccCCCCccCCCCchHHHHHHhCCeEEEEcCCCCCCCCCCCCCC-chh--HHHHHHH
Q 004475 508 KDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGPSIPIIGEGDKLPN-DRF--VEQLVSS 584 (751)
Q Consensus 508 ~~~~~P~vv~~HGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~v~~~~~~~~~g~g~~~~~-~~~--~~~~~~d 584 (751)
..++.||+++.+|....+ ....+......|+.|||+.....-+++.-.|...-. ... -.....|
T Consensus 444 ~~g~~p~lLygYGaYG~s-------------~~p~Fs~~~lSLlDRGfiyAIAHVRGGgelG~~WYe~GK~l~K~NTf~D 510 (682)
T COG1770 444 LDGSAPLLLYGYGAYGIS-------------MDPSFSIARLSLLDRGFVYAIAHVRGGGELGRAWYEDGKLLNKKNTFTD 510 (682)
T ss_pred CCCCCcEEEEEecccccc-------------CCcCcccceeeeecCceEEEEEEeecccccChHHHHhhhhhhccccHHH
Confidence 245689999999964211 122222345577899998766344433222222100 000 1134789
Q ss_pred HHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEccCCCCCCCCc----cCcccccccchhhH----
Q 004475 585 AEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGSYNKTLTP----FGFQTEFRTLWEAT---- 656 (751)
Q Consensus 585 ~~~~v~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~~d~~~~~----~~~~~~~~~~~~~~---- 656 (751)
++++.++|.+++..++++|+++|.|+||+++..++...|+.|+++|+..|++|...+. .-+...+...|.++
T Consensus 511 FIa~a~~Lv~~g~~~~~~i~a~GGSAGGmLmGav~N~~P~lf~~iiA~VPFVDvltTMlD~slPLT~~E~~EWGNP~d~e 590 (682)
T COG1770 511 FIAAARHLVKEGYTSPDRIVAIGGSAGGMLMGAVANMAPDLFAGIIAQVPFVDVLTTMLDPSLPLTVTEWDEWGNPLDPE 590 (682)
T ss_pred HHHHHHHHHHcCcCCccceEEeccCchhHHHHHHHhhChhhhhheeecCCccchhhhhcCCCCCCCccchhhhCCcCCHH
Confidence 9999999999999999999999999999999999999999999999999998833211 11112223334332
Q ss_pred --HHHHhcCcccccCCCC-CCEEEEEcCCCCCCCCChHHHHHHHHHHHhCCC---cEEEEEeCCCCCcC
Q 004475 657 --NVYIEMSPITHANKIK-KPILIIHGEVDDKVGLFPMQAERFFDALKGHGA---LSRLVLLPFEHHVY 719 (751)
Q Consensus 657 --~~~~~~~~~~~~~~~~-~P~li~~G~~D~~vp~~~~~~~~~~~~l~~~~~---~~~~~~~~~~~H~~ 719 (751)
+.+..++|..++.... +|+|++.|..|+.|. +.+..+..++|++.+. ++-+.+--++||+.
T Consensus 591 ~y~yikSYSPYdNV~a~~YP~ilv~~Gl~D~rV~--YwEpAKWvAkLR~~~td~~plLlkt~M~aGHgG 657 (682)
T COG1770 591 YYDYIKSYSPYDNVEAQPYPAILVTTGLNDPRVQ--YWEPAKWVAKLRELKTDGNPLLLKTNMDAGHGG 657 (682)
T ss_pred HHHHHhhcCchhccccCCCCceEEEccccCCccc--cchHHHHHHHHhhcccCCCcEEEEecccccCCC
Confidence 3456789998887754 789999999999999 8888889999987543 45556656889975
No 6
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.94 E-value=4.5e-25 Score=233.11 Aligned_cols=251 Identities=14% Similarity=0.075 Sum_probs=178.6
Q ss_pred CcceeEEeecCCCCCCCCcccccCCCCcccccceeecCCCCe--EEEEEeecccccccCCceeEEEEEcCCCCeeeccCC
Q 004475 3 FFTGIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKR--IAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFES 80 (751)
Q Consensus 3 ~~~~~~~~~~~~~~~~g~~~~l~~~~~~~~~~~p~~SPDG~~--iaf~~~~~~~~~~~~~~~~l~i~~~~~g~~~~lt~~ 80 (751)
+.+.||++|.++ +..++||. .......|+|||||++ ++|++.+ .+..+||++++++|+.++|+..
T Consensus 163 ~~~~l~~~d~dG----~~~~~lt~--~~~~~~sP~wSPDG~~~~~~y~S~~-------~g~~~I~~~~l~~g~~~~lt~~ 229 (428)
T PRK01029 163 KQGELWSVDYDG----QNLRPLTQ--EHSLSITPTWMHIGSGFPYLYVSYK-------LGVPKIFLGSLENPAGKKILAL 229 (428)
T ss_pred ccceEEEEcCCC----CCceEccc--CCCCcccceEccCCCceEEEEEEcc-------CCCceEEEEECCCCCceEeecC
Confidence 356899999999 99999984 2334789999999998 5567643 4568999999999999999876
Q ss_pred CCccccceeeeeEEecCCcEEEEeecCCCCCCCCCCCCCCCCceeeccccccccchhhhhccCCccchhhhhhheeeEEE
Q 004475 81 PDICLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLV 160 (751)
Q Consensus 81 ~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 160 (751)
+.. ...++|||||++|+|.+..... .++|
T Consensus 230 ~g~-----~~~p~wSPDG~~Laf~s~~~g~----------------------------------------------~di~ 258 (428)
T PRK01029 230 QGN-----QLMPTFSPRKKLLAFISDRYGN----------------------------------------------PDLF 258 (428)
T ss_pred CCC-----ccceEECCCCCEEEEEECCCCC----------------------------------------------ccee
Confidence 653 3467999999999998642110 2344
Q ss_pred E--EcC-C---CCceecCCC--ceEEeeeeCCCCceEEEEEecCCcccccccCCCceeEEEEeCC--CceeeeeccCCCC
Q 004475 161 L--GSL-D---GTAKDFGTP--AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTD--GKLVRELCDLPPA 230 (751)
Q Consensus 161 ~--~~~-~---G~~~~lt~~--~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~--~~~~~~l~~~~~~ 230 (751)
+ +++ . |+.++++.. .....++|||||++|+|.+.... ..+||+++++ ++..++++....
T Consensus 259 ~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g----------~~~ly~~~~~~~g~~~~~lt~~~~- 327 (428)
T PRK01029 259 IQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDG----------RPRIYIMQIDPEGQSPRLLTKKYR- 327 (428)
T ss_pred EEEeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCC----------CceEEEEECcccccceEEeccCCC-
Confidence 4 344 2 466788765 34468999999999999875421 3468888875 344565644322
Q ss_pred CCCCCccCCccCCCceeeeecCCCceEEEEEeccCCCCccccCcccceeeccCCCCCCCCceEeEeeceeEE-EEEecCC
Q 004475 231 EDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFS-VSWCDDS 309 (751)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~spdG~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~-~~~spdg 309 (751)
....+.|||||++ |+|+...+ ...+|++++++ ++..+.++....... +.|||||
T Consensus 328 ------------~~~~p~wSPDG~~-Laf~~~~~---------g~~~I~v~dl~---~g~~~~Lt~~~~~~~~p~wSpDG 382 (428)
T PRK01029 328 ------------NSSCPAWSPDGKK-IAFCSVIK---------GVRQICVYDLA---TGRDYQLTTSPENKESPSWAIDS 382 (428)
T ss_pred ------------CccceeECCCCCE-EEEEEcCC---------CCcEEEEEECC---CCCeEEccCCCCCccceEECCCC
Confidence 1235699999999 77765321 23579999986 667777776655556 9999999
Q ss_pred ceEEEeeeecccceeEEEecCCCCCCcceeeeecccccccCCCCCCCeeeCCCC
Q 004475 310 LALVNETWYKTSQTRTWLVCPGSKDVAPRVLFDRVFENVYSDPGSPMMTRTSTG 363 (751)
Q Consensus 310 ~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~spDG 363 (751)
+.|+|.+... ....||+++++++ +.+.++...... .. |+|||-.
T Consensus 383 ~~L~f~~~~~-g~~~L~~vdl~~g--~~~~Lt~~~g~~-~~------p~Ws~~~ 426 (428)
T PRK01029 383 LHLVYSAGNS-NESELYLISLITK--KTRKIVIGSGEK-RF------PSWGAFP 426 (428)
T ss_pred CEEEEEECCC-CCceEEEEECCCC--CEEEeecCCCcc-cC------ceecCCC
Confidence 9999987543 3468999999884 556676543321 11 7899854
No 7
>PF00326 Peptidase_S9: Prolyl oligopeptidase family This family belongs to family S9 of the peptidase classification.; InterPro: IPR001375 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain covers the active site serine of the serine peptidases belonging to MEROPS peptidase family S9 (prolyl oligopeptidase family, clan SC). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Examples of protein families containing this domain are: Prolyl endopeptidase (3.4.21.26 from EC) (PE) (also called post-proline cleaving enzyme). PE is an enzyme that cleaves peptide bonds on the C-terminal side of prolyl residues. The sequence of PE has been obtained from a mammalian species (pig) and from bacteria (Flavobacterium meningosepticum and Aeromonas hydrophila); there is a high degree of sequence conservation between these sequences. Escherichia coli protease II (3.4.21.83 from EC) (oligopeptidase B) (gene prtB) which cleaves peptide bonds on the C-terminal side of lysyl and argininyl residues. Dipeptidyl peptidase IV (3.4.14.5 from EC) (DPP IV). DPP IV is an enzyme that removes N-terminal dipeptides sequentially from polypeptides having unsubstituted N-termini provided that the penultimate residue is proline. Saccharomyces cerevisiae (Baker's yeast) vacuolar dipeptidyl aminopeptidases A and B (DPAP A and DPAP B), encoded by the STE13 and DAP2 genes respectively. DPAP A is responsible for the proteolytic maturation of the alpha-factor precursor. Acylamino-acid-releasing enzyme (3.4.19.1 from EC) (acyl-peptide hydrolase). This enzyme catalyses the hydrolysis of the amino-terminal peptide bond of an N-acetylated protein to generate a N-acetylated amino acid and a protein with a free amino-terminus. These proteins belong to MEROPS peptidase families S9A, S9B and S9C.; GO: 0008236 serine-type peptidase activity, 0006508 proteolysis; PDB: 2AJ8_D 1ORV_D 2AJB_C 2BUC_D 1ORW_D 2AJC_D 2AJD_C 2BUA_A 2HU8_B 3O4J_B ....
Probab=99.94 E-value=3.1e-26 Score=221.06 Aligned_cols=196 Identities=28% Similarity=0.440 Sum_probs=161.5
Q ss_pred hHHHHHHhCCeEEEEcCCCCCCCCCCCC---CCchhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHh
Q 004475 545 TSSLIFLARRFAVLAGPSIPIIGEGDKL---PNDRFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAH 621 (751)
Q Consensus 545 ~~~~~~~~~G~~v~~~~~~~~~g~g~~~---~~~~~~~~~~~d~~~~v~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~ 621 (751)
.....|+++||+|+.+++++..|+|... .........++|+.+++++++++..+|++||+|+|+|+||++|+.++.+
T Consensus 5 ~~~~~la~~Gy~v~~~~~rGs~g~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~iD~~ri~i~G~S~GG~~a~~~~~~ 84 (213)
T PF00326_consen 5 WNAQLLASQGYAVLVPNYRGSGGYGKDFHEAGRGDWGQADVDDVVAAIEYLIKQYYIDPDRIGIMGHSYGGYLALLAATQ 84 (213)
T ss_dssp HHHHHHHTTT-EEEEEE-TTSSSSHHHHHHTTTTGTTHHHHHHHHHHHHHHHHTTSEEEEEEEEEEETHHHHHHHHHHHH
T ss_pred HHHHHHHhCCEEEEEEcCCCCCccchhHHHhhhccccccchhhHHHHHHHHhccccccceeEEEEcccccccccchhhcc
Confidence 4567888999999998888888877642 2233445679999999999999999999999999999999999999999
Q ss_pred CCCceeEEEEccCCCCCCCCccC---ccc----ccccchhhHHHHHhcCcccccCC--CCCCEEEEEcCCCCCCCCChHH
Q 004475 622 APHLFCCGIARSGSYNKTLTPFG---FQT----EFRTLWEATNVYIEMSPITHANK--IKKPILIIHGEVDDKVGLFPMQ 692 (751)
Q Consensus 622 ~p~~~~~~v~~~~~~d~~~~~~~---~~~----~~~~~~~~~~~~~~~~~~~~~~~--~~~P~li~~G~~D~~vp~~~~~ 692 (751)
+|++|+++|+.+|++|....... +.. ....++...+.|...+++..+.+ +++|+|++||++|.+|| +.+
T Consensus 85 ~~~~f~a~v~~~g~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~P~li~hG~~D~~Vp--~~~ 162 (213)
T PF00326_consen 85 HPDRFKAAVAGAGVSDLFSYYGTTDIYTKAEYLEYGDPWDNPEFYRELSPISPADNVQIKPPVLIIHGENDPRVP--PSQ 162 (213)
T ss_dssp TCCGSSEEEEESE-SSTTCSBHHTCCHHHGHHHHHSSTTTSHHHHHHHHHGGGGGGCGGGSEEEEEEETTBSSST--THH
T ss_pred cceeeeeeeccceecchhcccccccccccccccccCccchhhhhhhhhccccccccccCCCCEEEEccCCCCccC--HHH
Confidence 99999999999999885543211 111 11333446677888888888888 89999999999999999 999
Q ss_pred HHHHHHHHHhCCCcEEEEEeCCCCCcCCccccHHHHHHHHHHHHHHHhcC
Q 004475 693 AERFFDALKGHGALSRLVLLPFEHHVYAARENVMHVIWETDRWLQKYCLS 742 (751)
Q Consensus 693 ~~~~~~~l~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~fl~~~l~~ 742 (751)
+.+++++|++.+++++++++|+++|.+...+...+...++.+||+++|+.
T Consensus 163 s~~~~~~L~~~g~~~~~~~~p~~gH~~~~~~~~~~~~~~~~~f~~~~l~~ 212 (213)
T PF00326_consen 163 SLRLYNALRKAGKPVELLIFPGEGHGFGNPENRRDWYERILDFFDKYLKK 212 (213)
T ss_dssp HHHHHHHHHHTTSSEEEEEETT-SSSTTSHHHHHHHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHhcCCCEEEEEcCcCCCCCCCchhHHHHHHHHHHHHHHHcCC
Confidence 99999999999999999999999999887777789999999999999974
No 8
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.94 E-value=1.3e-24 Score=229.59 Aligned_cols=265 Identities=17% Similarity=0.177 Sum_probs=182.5
Q ss_pred cceeecCCCCeEEEEEeecccccccCCceeEEEEEcCCCCeeeccCCCCccccceeeeeEEecCCcE--EEEeecCCCCC
Q 004475 34 NFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTL--LIFTIPSSRRD 111 (751)
Q Consensus 34 ~~p~~SPDG~~iaf~~~~~~~~~~~~~~~~l~i~~~~~g~~~~lt~~~~~~~~~~~~~~~wspDg~~--l~~~~~~~~~~ 111 (751)
..|.++ +++|||+....+...+ ....+||++|.+|++.++||..... ...|+|||||+. ++|.+...
T Consensus 140 g~~g~~--~~~iayv~~~~~~~~~-~~~~~l~~~d~dG~~~~~lt~~~~~-----~~sP~wSPDG~~~~~~y~S~~~--- 208 (428)
T PRK01029 140 GVPGIS--SGKIIFSLSTTNSDTE-LKQGELWSVDYDGQNLRPLTQEHSL-----SITPTWMHIGSGFPYLYVSYKL--- 208 (428)
T ss_pred CCCccc--cCEEEEEEeeCCcccc-cccceEEEEcCCCCCceEcccCCCC-----cccceEccCCCceEEEEEEccC---
Confidence 346666 8999999874321111 2357999999999999999986653 357799999987 44564421
Q ss_pred CCCCCCCCCCCceeeccccccccchhhhhccCCccchhhhhhheeeEEEEEcC-CCCceecCCC-ceEEeeeeCCCCceE
Q 004475 112 PPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DGTAKDFGTP-AVYTAVEPSPDQKYV 189 (751)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~G~~~~lt~~-~~~~~~~~SpDG~~i 189 (751)
...+||++++ +|+.++|+.. +....++|||||++|
T Consensus 209 -------------------------------------------g~~~I~~~~l~~g~~~~lt~~~g~~~~p~wSPDG~~L 245 (428)
T PRK01029 209 -------------------------------------------GVPKIFLGSLENPAGKKILALQGNQLMPTFSPRKKLL 245 (428)
T ss_pred -------------------------------------------CCceEEEEECCCCCceEeecCCCCccceEECCCCCEE
Confidence 1158999999 5688888876 556689999999999
Q ss_pred EEEEecCCcccccccCCCceeEEE--EeCCC---ceeeeeccCCCCCCCCCccCCccCCCceeeeecCCCceEEEEEecc
Q 004475 190 LITSMHRPYSYKVPCARFSQKVQV--WTTDG---KLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQD 264 (751)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~l~~--~d~~~---~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~spdG~~~i~~~~~~~ 264 (751)
+|++.... ..++|+ +++++ ++.++++..... ....++|||||++ |+|++..+
T Consensus 246 af~s~~~g----------~~di~~~~~~~~~g~~g~~~~lt~~~~~------------~~~~p~wSPDG~~-Laf~s~~~ 302 (428)
T PRK01029 246 AFISDRYG----------NPDLFIQSFSLETGAIGKPRRLLNEAFG------------TQGNPSFSPDGTR-LVFVSNKD 302 (428)
T ss_pred EEEECCCC----------CcceeEEEeecccCCCCcceEeecCCCC------------CcCCeEECCCCCE-EEEEECCC
Confidence 99875421 224555 45543 345555543211 1125699999999 78865221
Q ss_pred CCCCccccCcccceeeccCCCCCCCCceEeEeeceeEE-EEEecCCceEEEeeeecccceeEEEecCCCCCCcceeeeec
Q 004475 265 RGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFS-VSWCDDSLALVNETWYKTSQTRTWLVCPGSKDVAPRVLFDR 343 (751)
Q Consensus 265 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~-~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~ 343 (751)
...+||+++++ ..++..+.++....... +.|||||++|+|..... +..+||+++++++ +.++++..
T Consensus 303 ---------g~~~ly~~~~~-~~g~~~~~lt~~~~~~~~p~wSPDG~~Laf~~~~~-g~~~I~v~dl~~g--~~~~Lt~~ 369 (428)
T PRK01029 303 ---------GRPRIYIMQID-PEGQSPRLLTKKYRNSSCPAWSPDGKKIAFCSVIK-GVRQICVYDLATG--RDYQLTTS 369 (428)
T ss_pred ---------CCceEEEEECc-ccccceEEeccCCCCccceeECCCCCEEEEEEcCC-CCcEEEEEECCCC--CeEEccCC
Confidence 22479998874 22344666766555556 99999999999987543 3468999999885 55677654
Q ss_pred ccccccCCCCCCCeeeCCCCCEEEEeeeecCCcceEEEEccCCCCCCCCCceeEEEecCCCceeEEeecc
Q 004475 344 VFENVYSDPGSPMMTRTSTGTNVIAKIKKENDEQIYILLNGRGFTPEGNIPFLDLFDINTGSKERIWESN 413 (751)
Q Consensus 344 ~~~~~~~~~~~~~~~~spDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~ 413 (751)
... ... +.|||||+.|+|.... .....|+++|+++++.++|+...
T Consensus 370 ~~~-~~~------p~wSpDG~~L~f~~~~------------------~g~~~L~~vdl~~g~~~~Lt~~~ 414 (428)
T PRK01029 370 PEN-KES------PSWAIDSLHLVYSAGN------------------SNESELYLISLITKKTRKIVIGS 414 (428)
T ss_pred CCC-ccc------eEECCCCCEEEEEECC------------------CCCceEEEEECCCCCEEEeecCC
Confidence 221 111 7899999999998732 12357999999999888887543
No 9
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.93 E-value=2.1e-24 Score=229.40 Aligned_cols=235 Identities=15% Similarity=0.122 Sum_probs=175.4
Q ss_pred CcceeEEeecCCCCCCCCcccccCCCCcccccceeecCCCCeEEEEEeecccccccCCceeEEEEEcCCCCeeeccCCCC
Q 004475 3 FFTGIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPD 82 (751)
Q Consensus 3 ~~~~~~~~~~~~~~~~g~~~~l~~~~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~~~~~l~i~~~~~g~~~~lt~~~~ 82 (751)
|..+||++|.++ +..++++. ....+..|+|||||++|||++.. .+..+||++++++|+.++++..+.
T Consensus 177 ~~~~l~~~d~dg----~~~~~lt~--~~~~~~~p~wSPDG~~la~~s~~-------~g~~~i~i~dl~~G~~~~l~~~~~ 243 (429)
T PRK03629 177 FPYELRVSDYDG----YNQFVVHR--SPQPLMSPAWSPDGSKLAYVTFE-------SGRSALVIQTLANGAVRQVASFPR 243 (429)
T ss_pred cceeEEEEcCCC----CCCEEeec--CCCceeeeEEcCCCCEEEEEEec-------CCCcEEEEEECCCCCeEEccCCCC
Confidence 567899999999 88888874 23357899999999999998642 345799999999999999986654
Q ss_pred ccccceeeeeEEecCCcEEEEeecCCCCCCCCCCCCCCCCceeeccccccccchhhhhccCCccchhhhhhheeeEEEEE
Q 004475 83 ICLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLG 162 (751)
Q Consensus 83 ~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 162 (751)
. ...++|||||+.|+|..... ...+||++
T Consensus 244 ~-----~~~~~~SPDG~~La~~~~~~----------------------------------------------g~~~I~~~ 272 (429)
T PRK03629 244 H-----NGAPAFSPDGSKLAFALSKT----------------------------------------------GSLNLYVM 272 (429)
T ss_pred C-----cCCeEECCCCCEEEEEEcCC----------------------------------------------CCcEEEEE
Confidence 2 35689999999999984321 11479999
Q ss_pred cC-CCCceecCCC-ceEEeeeeCCCCceEEEEEecCCcccccccCCCceeEEEEeCCCceeeeeccCCCCCCCCCccCCc
Q 004475 163 SL-DGTAKDFGTP-AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSV 240 (751)
Q Consensus 163 ~~-~G~~~~lt~~-~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~ 240 (751)
|+ +|+.++++.. .....+.|||||++|+|.+.... ..+||++++++++.++++.....
T Consensus 273 d~~tg~~~~lt~~~~~~~~~~wSPDG~~I~f~s~~~g----------~~~Iy~~d~~~g~~~~lt~~~~~---------- 332 (429)
T PRK03629 273 DLASGQIRQVTDGRSNNTEPTWFPDSQNLAYTSDQAG----------RPQVYKVNINGGAPQRITWEGSQ---------- 332 (429)
T ss_pred ECCCCCEEEccCCCCCcCceEECCCCCEEEEEeCCCC----------CceEEEEECCCCCeEEeecCCCC----------
Confidence 99 6688899877 56678999999999999875421 34799999998877777432211
Q ss_pred cCCCceeeeecCCCceEEEEEeccCCCCccccCcccceeeccCCCCCCCCceEeEeeceeEE-EEEecCCceEEEeeeec
Q 004475 241 REGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFS-VSWCDDSLALVNETWYK 319 (751)
Q Consensus 241 ~~~~~~~~~spdG~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~-~~~spdg~~l~~~~~~~ 319 (751)
...+.|||||++ |+++...+ ....|++++++ ++..+.++.. .... +.|||||+.|+|.+...
T Consensus 333 ---~~~~~~SpDG~~-Ia~~~~~~---------g~~~I~~~dl~---~g~~~~Lt~~-~~~~~p~~SpDG~~i~~~s~~~ 395 (429)
T PRK03629 333 ---NQDADVSSDGKF-MVMVSSNG---------GQQHIAKQDLA---TGGVQVLTDT-FLDETPSIAPNGTMVIYSSSQG 395 (429)
T ss_pred ---ccCEEECCCCCE-EEEEEccC---------CCceEEEEECC---CCCeEEeCCC-CCCCCceECCCCCEEEEEEcCC
Confidence 225699999999 77765221 22478999986 5566666643 2334 99999999999988643
Q ss_pred ccceeEEEecCCCCCCcceeee
Q 004475 320 TSQTRTWLVCPGSKDVAPRVLF 341 (751)
Q Consensus 320 ~~~~~l~~~~~~~~~~~~~~l~ 341 (751)
....|+++++++. ..+.+.
T Consensus 396 -~~~~l~~~~~~G~--~~~~l~ 414 (429)
T PRK03629 396 -MGSVLNLVSTDGR--FKARLP 414 (429)
T ss_pred -CceEEEEEECCCC--CeEECc
Confidence 3467999999874 445554
No 10
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.93 E-value=2.4e-24 Score=230.75 Aligned_cols=235 Identities=14% Similarity=0.169 Sum_probs=174.8
Q ss_pred cceeEEeecCCCCCCCCcccccCCCCcccccceeecCCCCeEEEEEeecccccccCCceeEEEEEcCCCCeeeccCCCCc
Q 004475 4 FTGIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDI 83 (751)
Q Consensus 4 ~~~~~~~~~~~~~~~g~~~~l~~~~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~~~~~l~i~~~~~g~~~~lt~~~~~ 83 (751)
..+||++|..+ +..++++. ....+..|+|||||++|||++.. .+..+||++++++|+.++++..+..
T Consensus 181 ~~~l~~~d~dg----~~~~~lt~--~~~~v~~p~wSpDG~~lay~s~~-------~g~~~i~~~dl~~g~~~~l~~~~g~ 247 (435)
T PRK05137 181 IKRLAIMDQDG----ANVRYLTD--GSSLVLTPRFSPNRQEITYMSYA-------NGRPRVYLLDLETGQRELVGNFPGM 247 (435)
T ss_pred ceEEEEECCCC----CCcEEEec--CCCCeEeeEECCCCCEEEEEEec-------CCCCEEEEEECCCCcEEEeecCCCc
Confidence 56899999988 88888883 33358899999999999998742 3458999999999999999866542
Q ss_pred cccceeeeeEEecCCcEEEEeecCCCCCCCCCCCCCCCCceeeccccccccchhhhhccCCccchhhhhhheeeEEEEEc
Q 004475 84 CLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGS 163 (751)
Q Consensus 84 ~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 163 (751)
...++|||||+.|+|..... ...+||+++
T Consensus 248 -----~~~~~~SPDG~~la~~~~~~----------------------------------------------g~~~Iy~~d 276 (435)
T PRK05137 248 -----TFAPRFSPDGRKVVMSLSQG----------------------------------------------GNTDIYTMD 276 (435)
T ss_pred -----ccCcEECCCCCEEEEEEecC----------------------------------------------CCceEEEEE
Confidence 45779999999999884321 115899999
Q ss_pred C-CCCceecCCC-ceEEeeeeCCCCceEEEEEecCCcccccccCCCceeEEEEeCCCceeeeeccCCCCCCCCCccCCcc
Q 004475 164 L-DGTAKDFGTP-AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVR 241 (751)
Q Consensus 164 ~-~G~~~~lt~~-~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~ 241 (751)
+ +|+.++|+.. .....+.|||||++|+|.+.... ..+||++++++++.++++.....
T Consensus 277 ~~~~~~~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g----------~~~Iy~~d~~g~~~~~lt~~~~~----------- 335 (435)
T PRK05137 277 LRSGTTTRLTDSPAIDTSPSYSPDGSQIVFESDRSG----------SPQLYVMNADGSNPRRISFGGGR----------- 335 (435)
T ss_pred CCCCceEEccCCCCccCceeEcCCCCEEEEEECCCC----------CCeEEEEECCCCCeEEeecCCCc-----------
Confidence 9 6688899877 55568999999999999875421 35799999999888887654222
Q ss_pred CCCceeeeecCCCceEEEEEeccCCCCccccCcccceeeccCCCCCCCCceEeEeeceeEE-EEEecCCceEEEeeeecc
Q 004475 242 EGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFS-VSWCDDSLALVNETWYKT 320 (751)
Q Consensus 242 ~~~~~~~~spdG~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~-~~~spdg~~l~~~~~~~~ 320 (751)
...+.|||||++ |++.... .....|++++++ ++..+.++.. .... +.|||||+.|+|.+....
T Consensus 336 --~~~~~~SpdG~~-ia~~~~~---------~~~~~i~~~d~~---~~~~~~lt~~-~~~~~p~~spDG~~i~~~~~~~~ 399 (435)
T PRK05137 336 --YSTPVWSPRGDL-IAFTKQG---------GGQFSIGVMKPD---GSGERILTSG-FLVEGPTWAPNGRVIMFFRQTPG 399 (435)
T ss_pred --ccCeEECCCCCE-EEEEEcC---------CCceEEEEEECC---CCceEeccCC-CCCCCCeECCCCCEEEEEEccCC
Confidence 224689999999 7776521 122478898875 4455555543 3456 999999999999885433
Q ss_pred cc--eeEEEecCCCCCCcceeee
Q 004475 321 SQ--TRTWLVCPGSKDVAPRVLF 341 (751)
Q Consensus 321 ~~--~~l~~~~~~~~~~~~~~l~ 341 (751)
.. ..||+++++++ ..+.+.
T Consensus 400 ~~~~~~L~~~dl~g~--~~~~l~ 420 (435)
T PRK05137 400 SGGAPKLYTVDLTGR--NEREVP 420 (435)
T ss_pred CCCcceEEEEECCCC--ceEEcc
Confidence 21 58999999884 445554
No 11
>PRK04043 tolB translocation protein TolB; Provisional
Probab=99.93 E-value=4.5e-24 Score=223.55 Aligned_cols=231 Identities=10% Similarity=0.038 Sum_probs=172.4
Q ss_pred cceeEEeecCCCCCCCCcccccCCCCcccccceeecCCCCe-EEEEEeecccccccCCceeEEEEEcCCCCeeeccCCCC
Q 004475 4 FTGIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKR-IAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPD 82 (751)
Q Consensus 4 ~~~~~~~~~~~~~~~g~~~~l~~~~~~~~~~~p~~SPDG~~-iaf~~~~~~~~~~~~~~~~l~i~~~~~g~~~~lt~~~~ 82 (751)
..+||+.|.++ ...+.++. .+ ....|+|||||++ ++|++.. .+..+||++++.+|+.++|+..+.
T Consensus 168 ~~~l~~~d~dg----~~~~~~~~--~~-~~~~p~wSpDG~~~i~y~s~~-------~~~~~Iyv~dl~tg~~~~lt~~~g 233 (419)
T PRK04043 168 KSNIVLADYTL----TYQKVIVK--GG-LNIFPKWANKEQTAFYYTSYG-------ERKPTLYKYNLYTGKKEKIASSQG 233 (419)
T ss_pred cceEEEECCCC----CceeEEcc--CC-CeEeEEECCCCCcEEEEEEcc-------CCCCEEEEEECCCCcEEEEecCCC
Confidence 46899999988 77777763 33 5779999999997 6666541 235799999999999999987554
Q ss_pred ccccceeeeeEEecCCcEEEEeecCCCCCCCCCCCCCCCCceeeccccccccchhhhhccCCccchhhhhhheeeEEEEE
Q 004475 83 ICLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLG 162 (751)
Q Consensus 83 ~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 162 (751)
....+.|||||+.|+|+.... ...+||++
T Consensus 234 -----~~~~~~~SPDG~~la~~~~~~----------------------------------------------g~~~Iy~~ 262 (419)
T PRK04043 234 -----MLVVSDVSKDGSKLLLTMAPK----------------------------------------------GQPDIYLY 262 (419)
T ss_pred -----cEEeeEECCCCCEEEEEEccC----------------------------------------------CCcEEEEE
Confidence 234679999999999985421 11589999
Q ss_pred cC-CCCceecCCC-ceEEeeeeCCCCceEEEEEecCCcccccccCCCceeEEEEeCCCceeeeeccCCCCCCCCCccCCc
Q 004475 163 SL-DGTAKDFGTP-AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSV 240 (751)
Q Consensus 163 ~~-~G~~~~lt~~-~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~ 240 (751)
++ +|+.++||.. .....+.|||||++|+|++.... ..+||++++++++.++++....
T Consensus 263 dl~~g~~~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g----------~~~Iy~~dl~~g~~~rlt~~g~----------- 321 (419)
T PRK04043 263 DTNTKTLTQITNYPGIDVNGNFVEDDKRIVFVSDRLG----------YPNIFMKKLNSGSVEQVVFHGK----------- 321 (419)
T ss_pred ECCCCcEEEcccCCCccCccEECCCCCEEEEEECCCC----------CceEEEEECCCCCeEeCccCCC-----------
Confidence 99 6688999877 44567899999999999986532 3589999999988877754210
Q ss_pred cCCCceeeeecCCCceEEEEEeccCCCCccccCcccceeeccCCCCCCCCceEeEeeceeEE-EEEecCCceEEEeeeec
Q 004475 241 REGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFS-VSWCDDSLALVNETWYK 319 (751)
Q Consensus 241 ~~~~~~~~~spdG~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~-~~~spdg~~l~~~~~~~ 319 (751)
....|||||++ |+++........ .....+|++++++ ++..+.|+.. +... |+|||||+.|+|.+..
T Consensus 322 ----~~~~~SPDG~~-Ia~~~~~~~~~~---~~~~~~I~v~d~~---~g~~~~LT~~-~~~~~p~~SPDG~~I~f~~~~- 388 (419)
T PRK04043 322 ----NNSSVSTYKNY-IVYSSRETNNEF---GKNTFNLYLISTN---SDYIRRLTAN-GVNQFPRFSSDGGSIMFIKYL- 388 (419)
T ss_pred ----cCceECCCCCE-EEEEEcCCCccc---CCCCcEEEEEECC---CCCeEECCCC-CCcCCeEECCCCCEEEEEEcc-
Confidence 12489999999 777653321110 0023589999987 6677788775 3445 9999999999999865
Q ss_pred ccceeEEEecCCCC
Q 004475 320 TSQTRTWLVCPGSK 333 (751)
Q Consensus 320 ~~~~~l~~~~~~~~ 333 (751)
.....|+++++++.
T Consensus 389 ~~~~~L~~~~l~g~ 402 (419)
T PRK04043 389 GNQSALGIIRLNYN 402 (419)
T ss_pred CCcEEEEEEecCCC
Confidence 45568999999884
No 12
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.92 E-value=1.9e-23 Score=222.02 Aligned_cols=249 Identities=18% Similarity=0.198 Sum_probs=181.0
Q ss_pred CeEEEEEeecccccccCCceeEEEEEcCCCCeeeccCCCCccccceeeeeEEecCCcEEEEeecCCCCCCCCCCCCCCCC
Q 004475 43 KRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGP 122 (751)
Q Consensus 43 ~~iaf~~~~~~~~~~~~~~~~l~i~~~~~g~~~~lt~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~ 122 (751)
++|||+..... .....+||++|.++++.+++|.+.. .+..++|||||+.|+|.+...
T Consensus 164 ~riayv~~~~~----~~~~~~l~~~d~dg~~~~~lt~~~~-----~~~~p~wSPDG~~la~~s~~~-------------- 220 (429)
T PRK03629 164 TRIAYVVQTNG----GQFPYELRVSDYDGYNQFVVHRSPQ-----PLMSPAWSPDGSKLAYVTFES-------------- 220 (429)
T ss_pred CeEEEEEeeCC----CCcceeEEEEcCCCCCCEEeecCCC-----ceeeeEEcCCCCEEEEEEecC--------------
Confidence 68999986321 1346799999999999999987664 356889999999999985421
Q ss_pred ceeeccccccccchhhhhccCCccchhhhhhheeeEEEEEcC-CCCceecCCC-ceEEeeeeCCCCceEEEEEecCCccc
Q 004475 123 KIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DGTAKDFGTP-AVYTAVEPSPDQKYVLITSMHRPYSY 200 (751)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~G~~~~lt~~-~~~~~~~~SpDG~~i~~~~~~~~~~~ 200 (751)
...+||++++ +|+.++++.. +....++|||||++|+|......
T Consensus 221 --------------------------------g~~~i~i~dl~~G~~~~l~~~~~~~~~~~~SPDG~~La~~~~~~g--- 265 (429)
T PRK03629 221 --------------------------------GRSALVIQTLANGAVRQVASFPRHNGAPAFSPDGSKLAFALSKTG--- 265 (429)
T ss_pred --------------------------------CCcEEEEEECCCCCeEEccCCCCCcCCeEECCCCCEEEEEEcCCC---
Confidence 1158999999 6788888765 55568999999999999754321
Q ss_pred ccccCCCceeEEEEeCCCceeeeeccCCCCCCCCCccCCccCCCceeeeecCCCceEEEEEeccCCCCccccCcccceee
Q 004475 201 KVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYT 280 (751)
Q Consensus 201 ~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~spdG~~~i~~~~~~~~~~~~~~~~~~~~l~~ 280 (751)
..+||++|+++++.++++..... ...+.|||||++ |+|++.. ....+||+
T Consensus 266 -------~~~I~~~d~~tg~~~~lt~~~~~-------------~~~~~wSPDG~~-I~f~s~~---------~g~~~Iy~ 315 (429)
T PRK03629 266 -------SLNLYVMDLASGQIRQVTDGRSN-------------NTEPTWFPDSQN-LAYTSDQ---------AGRPQVYK 315 (429)
T ss_pred -------CcEEEEEECCCCCEEEccCCCCC-------------cCceEECCCCCE-EEEEeCC---------CCCceEEE
Confidence 34699999999888887654322 235699999999 7776522 12248999
Q ss_pred ccCCCCCCCCceEeEeeceeEE-EEEecCCceEEEeeeecccceeEEEecCCCCCCcceeeeecccccccCCCCCCCeee
Q 004475 281 QPAEPAEGEKPEILHKLDLRFS-VSWCDDSLALVNETWYKTSQTRTWLVCPGSKDVAPRVLFDRVFENVYSDPGSPMMTR 359 (751)
Q Consensus 281 ~~~~~~~~~~~~~l~~~~~~~~-~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 359 (751)
++++ ++..+.++....... +.|||||++|+|..... ...+||+++++++ ..+.|+... .. .. ++|
T Consensus 316 ~d~~---~g~~~~lt~~~~~~~~~~~SpDG~~Ia~~~~~~-g~~~I~~~dl~~g--~~~~Lt~~~-~~-----~~--p~~ 381 (429)
T PRK03629 316 VNIN---GGAPQRITWEGSQNQDADVSSDGKFMVMVSSNG-GQQHIAKQDLATG--GVQVLTDTF-LD-----ET--PSI 381 (429)
T ss_pred EECC---CCCeEEeecCCCCccCEEECCCCCEEEEEEccC-CCceEEEEECCCC--CeEEeCCCC-CC-----CC--ceE
Confidence 9986 556667765544555 89999999999987433 3468999999884 456666421 11 11 779
Q ss_pred CCCCCEEEEeeeecCCcceEEEEccCCCCCCCCCceeEEEecCCCceeEEee
Q 004475 360 TSTGTNVIAKIKKENDEQIYILLNGRGFTPEGNIPFLDLFDINTGSKERIWE 411 (751)
Q Consensus 360 spDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l~~ 411 (751)
||||+.|+|.+.+ +....|++++++++..+++..
T Consensus 382 SpDG~~i~~~s~~------------------~~~~~l~~~~~~G~~~~~l~~ 415 (429)
T PRK03629 382 APNGTMVIYSSSQ------------------GMGSVLNLVSTDGRFKARLPA 415 (429)
T ss_pred CCCCCEEEEEEcC------------------CCceEEEEEECCCCCeEECcc
Confidence 9999999998843 223478899997666666644
No 13
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.92 E-value=2.5e-23 Score=222.84 Aligned_cols=253 Identities=16% Similarity=0.188 Sum_probs=183.1
Q ss_pred CCeEEEEEeecccccccCCceeEEEEEcCCCCeeeccCCCCccccceeeeeEEecCCcEEEEeecCCCCCCCCCCCCCCC
Q 004475 42 GKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLG 121 (751)
Q Consensus 42 G~~iaf~~~~~~~~~~~~~~~~l~i~~~~~g~~~~lt~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~ 121 (751)
..+|||++...+ ......+||++|.+++..+++|.... .+..++|||||++|+|.+....
T Consensus 165 ~~~iafv~~~~~---~~~~~~~l~~~d~dg~~~~~lt~~~~-----~v~~p~wSpDG~~lay~s~~~g------------ 224 (435)
T PRK05137 165 DTRIVYVAESGP---KNKRIKRLAIMDQDGANVRYLTDGSS-----LVLTPRFSPNRQEITYMSYANG------------ 224 (435)
T ss_pred CCeEEEEEeeCC---CCCcceEEEEECCCCCCcEEEecCCC-----CeEeeEECCCCCEEEEEEecCC------------
Confidence 458999986321 00225799999999999999987655 3678899999999999864311
Q ss_pred CceeeccccccccchhhhhccCCccchhhhhhheeeEEEEEcC-CCCceecCCC-ceEEeeeeCCCCceEEEEEecCCcc
Q 004475 122 PKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DGTAKDFGTP-AVYTAVEPSPDQKYVLITSMHRPYS 199 (751)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~G~~~~lt~~-~~~~~~~~SpDG~~i~~~~~~~~~~ 199 (751)
..+||++++ +|+.++++.. +....++|||||++|+|+.....
T Consensus 225 ----------------------------------~~~i~~~dl~~g~~~~l~~~~g~~~~~~~SPDG~~la~~~~~~g-- 268 (435)
T PRK05137 225 ----------------------------------RPRVYLLDLETGQRELVGNFPGMTFAPRFSPDGRKVVMSLSQGG-- 268 (435)
T ss_pred ----------------------------------CCEEEEEECCCCcEEEeecCCCcccCcEECCCCCEEEEEEecCC--
Confidence 158999999 6787888766 56678999999999998765321
Q ss_pred cccccCCCceeEEEEeCCCceeeeeccCCCCCCCCCccCCccCCCceeeeecCCCceEEEEEeccCCCCccccCccccee
Q 004475 200 YKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIY 279 (751)
Q Consensus 200 ~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~spdG~~~i~~~~~~~~~~~~~~~~~~~~l~ 279 (751)
..+||++|+++++.++|+...... ..+.|||||++ |+|.+..+ ...+||
T Consensus 269 --------~~~Iy~~d~~~~~~~~Lt~~~~~~-------------~~~~~spDG~~-i~f~s~~~---------g~~~Iy 317 (435)
T PRK05137 269 --------NTDIYTMDLRSGTTTRLTDSPAID-------------TSPSYSPDGSQ-IVFESDRS---------GSPQLY 317 (435)
T ss_pred --------CceEEEEECCCCceEEccCCCCcc-------------CceeEcCCCCE-EEEEECCC---------CCCeEE
Confidence 457999999999888887654332 24699999999 77865221 234899
Q ss_pred eccCCCCCCCCceEeEeeceeEE-EEEecCCceEEEeeeecccceeEEEecCCCCCCcceeeeecccccccCCCCCCCee
Q 004475 280 TQPAEPAEGEKPEILHKLDLRFS-VSWCDDSLALVNETWYKTSQTRTWLVCPGSKDVAPRVLFDRVFENVYSDPGSPMMT 358 (751)
Q Consensus 280 ~~~~~~~~~~~~~~l~~~~~~~~-~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 358 (751)
+++++ ++..+.++...+.+. +.|||||+.|+|.... ....+|++++++++ ..+.++... . ... ++
T Consensus 318 ~~d~~---g~~~~~lt~~~~~~~~~~~SpdG~~ia~~~~~-~~~~~i~~~d~~~~--~~~~lt~~~-~-~~~------p~ 383 (435)
T PRK05137 318 VMNAD---GSNPRRISFGGGRYSTPVWSPRGDLIAFTKQG-GGQFSIGVMKPDGS--GERILTSGF-L-VEG------PT 383 (435)
T ss_pred EEECC---CCCeEEeecCCCcccCeEECCCCCEEEEEEcC-CCceEEEEEECCCC--ceEeccCCC-C-CCC------Ce
Confidence 99986 667778877666667 9999999999998743 23468999998774 344554321 1 111 78
Q ss_pred eCCCCCEEEEeeeecCCcceEEEEccCCCCCCCCCceeEEEecCCCceeEEe
Q 004475 359 RTSTGTNVIAKIKKENDEQIYILLNGRGFTPEGNIPFLDLFDINTGSKERIW 410 (751)
Q Consensus 359 ~spDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l~ 410 (751)
|||||+.|+|..... + ...+..|+++|++++..+++.
T Consensus 384 ~spDG~~i~~~~~~~------------~---~~~~~~L~~~dl~g~~~~~l~ 420 (435)
T PRK05137 384 WAPNGRVIMFFRQTP------------G---SGGAPKLYTVDLTGRNEREVP 420 (435)
T ss_pred ECCCCCEEEEEEccC------------C---CCCcceEEEEECCCCceEEcc
Confidence 999999999988321 0 001257999999887766554
No 14
>PRK04043 tolB translocation protein TolB; Provisional
Probab=99.92 E-value=6.4e-23 Score=214.90 Aligned_cols=247 Identities=15% Similarity=0.125 Sum_probs=179.3
Q ss_pred CeEEEEEeecccccccCCceeEEEEEcCCCCeeeccCCCCccccceeeeeEEecCCcE-EEEeecCCCCCCCCCCCCCCC
Q 004475 43 KRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTL-LIFTIPSSRRDPPKKTMVPLG 121 (751)
Q Consensus 43 ~~iaf~~~~~~~~~~~~~~~~l~i~~~~~g~~~~lt~~~~~~~~~~~~~~~wspDg~~-l~~~~~~~~~~~~~~~~~~~~ 121 (751)
.++||++... +....+||++|.++...++++... . ...+.|||||++ ++|.+...+
T Consensus 155 ~r~~~v~~~~-----~~~~~~l~~~d~dg~~~~~~~~~~-~-----~~~p~wSpDG~~~i~y~s~~~~------------ 211 (419)
T PRK04043 155 KRKVVFSKYT-----GPKKSNIVLADYTLTYQKVIVKGG-L-----NIFPKWANKEQTAFYYTSYGER------------ 211 (419)
T ss_pred eeEEEEEEcc-----CCCcceEEEECCCCCceeEEccCC-C-----eEeEEECCCCCcEEEEEEccCC------------
Confidence 4777776411 123589999999999899888764 2 357899999996 666644211
Q ss_pred CceeeccccccccchhhhhccCCccchhhhhhheeeEEEEEcC-CCCceecCCC-ceEEeeeeCCCCceEEEEEecCCcc
Q 004475 122 PKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DGTAKDFGTP-AVYTAVEPSPDQKYVLITSMHRPYS 199 (751)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~G~~~~lt~~-~~~~~~~~SpDG~~i~~~~~~~~~~ 199 (751)
..+||++|+ +|+.++|+.. +....+.|||||++|+|+.....
T Consensus 212 ----------------------------------~~~Iyv~dl~tg~~~~lt~~~g~~~~~~~SPDG~~la~~~~~~g-- 255 (419)
T PRK04043 212 ----------------------------------KPTLYKYNLYTGKKEKIASSQGMLVVSDVSKDGSKLLLTMAPKG-- 255 (419)
T ss_pred ----------------------------------CCEEEEEECCCCcEEEEecCCCcEEeeEECCCCCEEEEEEccCC--
Confidence 158999999 7788999876 55667899999999999865421
Q ss_pred cccccCCCceeEEEEeCCCceeeeeccCCCCCCCCCccCCccCCCceeeeecCCCceEEEEEeccCCCCccccCccccee
Q 004475 200 YKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIY 279 (751)
Q Consensus 200 ~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~spdG~~~i~~~~~~~~~~~~~~~~~~~~l~ 279 (751)
..+||++++++++.++|+..+.... ...|||||++ |+|++.. ....+||
T Consensus 256 --------~~~Iy~~dl~~g~~~~LT~~~~~d~-------------~p~~SPDG~~-I~F~Sdr---------~g~~~Iy 304 (419)
T PRK04043 256 --------QPDIYLYDTNTKTLTQITNYPGIDV-------------NGNFVEDDKR-IVFVSDR---------LGYPNIF 304 (419)
T ss_pred --------CcEEEEEECCCCcEEEcccCCCccC-------------ccEECCCCCE-EEEEECC---------CCCceEE
Confidence 4689999999998888877664322 3389999999 8887622 2335899
Q ss_pred eccCCCCCCCCceEeEeeceeEEEEEecCCceEEEeeeecc-----cceeEEEecCCCCCCcceeeeecccccccCCCCC
Q 004475 280 TQPAEPAEGEKPEILHKLDLRFSVSWCDDSLALVNETWYKT-----SQTRTWLVCPGSKDVAPRVLFDRVFENVYSDPGS 354 (751)
Q Consensus 280 ~~~~~~~~~~~~~~l~~~~~~~~~~~spdg~~l~~~~~~~~-----~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 354 (751)
+++++ ++..++++.... ..+.|||||+.|+|...... ...+||+++++++ ..+.|+..... .
T Consensus 305 ~~dl~---~g~~~rlt~~g~-~~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g--~~~~LT~~~~~------~- 371 (419)
T PRK04043 305 MKKLN---SGSVEQVVFHGK-NNSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSD--YIRRLTANGVN------Q- 371 (419)
T ss_pred EEECC---CCCeEeCccCCC-cCceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCC--CeEECCCCCCc------C-
Confidence 99997 666666664321 12689999999999885431 2268999999884 56778764211 1
Q ss_pred CCeeeCCCCCEEEEeeeecCCcceEEEEccCCCCCCCCCceeEEEecCCCceeEEee
Q 004475 355 PMMTRTSTGTNVIAKIKKENDEQIYILLNGRGFTPEGNIPFLDLFDINTGSKERIWE 411 (751)
Q Consensus 355 ~~~~~spDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l~~ 411 (751)
.++|||||+.|+|.... +....|+.+++++....++..
T Consensus 372 -~p~~SPDG~~I~f~~~~------------------~~~~~L~~~~l~g~~~~~l~~ 409 (419)
T PRK04043 372 -FPRFSSDGGSIMFIKYL------------------GNQSALGIIRLNYNKSFLFPL 409 (419)
T ss_pred -CeEECCCCCEEEEEEcc------------------CCcEEEEEEecCCCeeEEeec
Confidence 17899999999998832 344579999998766666654
No 15
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.92 E-value=2.4e-23 Score=222.02 Aligned_cols=234 Identities=16% Similarity=0.095 Sum_probs=171.3
Q ss_pred cceeEEeecCCCCCCCCcccccCCCCcccccceeecCCCCeEEEEEeecccccccCCceeEEEEEcCCCCeeeccCCCCc
Q 004475 4 FTGIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDI 83 (751)
Q Consensus 4 ~~~~~~~~~~~~~~~g~~~~l~~~~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~~~~~l~i~~~~~g~~~~lt~~~~~ 83 (751)
...|+++|.++ ...+.++.. ...+..|+|||||++|||++.. .+..+||++++.+|+.++++..+..
T Consensus 197 ~~~l~i~d~dG----~~~~~l~~~--~~~~~~p~wSPDG~~La~~s~~-------~g~~~L~~~dl~tg~~~~lt~~~g~ 263 (448)
T PRK04792 197 PYQLMIADYDG----YNEQMLLRS--PEPLMSPAWSPDGRKLAYVSFE-------NRKAEIFVQDIYTQVREKVTSFPGI 263 (448)
T ss_pred ceEEEEEeCCC----CCceEeecC--CCcccCceECCCCCEEEEEEec-------CCCcEEEEEECCCCCeEEecCCCCC
Confidence 45788899888 777888743 3357899999999999998742 3457999999999999999866542
Q ss_pred cccceeeeeEEecCCcEEEEeecCCCCCCCCCCCCCCCCceeeccccccccchhhhhccCCccchhhhhhheeeEEEEEc
Q 004475 84 CLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGS 163 (751)
Q Consensus 84 ~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 163 (751)
...++|||||+.|+|..... ...+||+++
T Consensus 264 -----~~~~~wSPDG~~La~~~~~~----------------------------------------------g~~~Iy~~d 292 (448)
T PRK04792 264 -----NGAPRFSPDGKKLALVLSKD----------------------------------------------GQPEIYVVD 292 (448)
T ss_pred -----cCCeeECCCCCEEEEEEeCC----------------------------------------------CCeEEEEEE
Confidence 24679999999999974321 115899999
Q ss_pred C-CCCceecCCC-ceEEeeeeCCCCceEEEEEecCCcccccccCCCceeEEEEeCCCceeeeeccCCCCCCCCCccCCcc
Q 004475 164 L-DGTAKDFGTP-AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVR 241 (751)
Q Consensus 164 ~-~G~~~~lt~~-~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~ 241 (751)
+ +|+.++++.. .....++|||||++|+|++.... ..+||++++++++.++++.....
T Consensus 293 l~tg~~~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g----------~~~Iy~~dl~~g~~~~Lt~~g~~----------- 351 (448)
T PRK04792 293 IATKALTRITRHRAIDTEPSWHPDGKSLIFTSERGG----------KPQIYRVNLASGKVSRLTFEGEQ----------- 351 (448)
T ss_pred CCCCCeEECccCCCCccceEECCCCCEEEEEECCCC----------CceEEEEECCCCCEEEEecCCCC-----------
Confidence 9 6688889876 55678999999999999865421 35799999998887777522111
Q ss_pred CCCceeeeecCCCceEEEEEeccCCCCccccCcccceeeccCCCCCCCCceEeEeeceeEE-EEEecCCceEEEeeeecc
Q 004475 242 EGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFS-VSWCDDSLALVNETWYKT 320 (751)
Q Consensus 242 ~~~~~~~~spdG~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~-~~~spdg~~l~~~~~~~~ 320 (751)
....+|||||++ |++++.. ....+|++++++ ++..+.++... ... +.|||||+.|+|.+...
T Consensus 352 --~~~~~~SpDG~~-l~~~~~~---------~g~~~I~~~dl~---~g~~~~lt~~~-~d~~ps~spdG~~I~~~~~~~- 414 (448)
T PRK04792 352 --NLGGSITPDGRS-MIMVNRT---------NGKFNIARQDLE---TGAMQVLTSTR-LDESPSVAPNGTMVIYSTTYQ- 414 (448)
T ss_pred --CcCeeECCCCCE-EEEEEec---------CCceEEEEEECC---CCCeEEccCCC-CCCCceECCCCCEEEEEEecC-
Confidence 113599999999 7776522 123478999986 55566665432 234 89999999999988643
Q ss_pred cceeEEEecCCCCCCcceeee
Q 004475 321 SQTRTWLVCPGSKDVAPRVLF 341 (751)
Q Consensus 321 ~~~~l~~~~~~~~~~~~~~l~ 341 (751)
+...||+++.++. ..+.+.
T Consensus 415 g~~~l~~~~~~G~--~~~~l~ 433 (448)
T PRK04792 415 GKQVLAAVSIDGR--FKARLP 433 (448)
T ss_pred CceEEEEEECCCC--ceEECc
Confidence 4467999998773 344454
No 16
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.91 E-value=6e-23 Score=218.61 Aligned_cols=227 Identities=15% Similarity=0.133 Sum_probs=166.4
Q ss_pred ceeEEeecCCCCCCCCcccccCCCCcccccceeecCCCCeEEEEEeecccccccCCceeEEEEEcCCCCeeeccCCCCcc
Q 004475 5 TGIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDIC 84 (751)
Q Consensus 5 ~~~~~~~~~~~~~~g~~~~l~~~~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~~~~~l~i~~~~~g~~~~lt~~~~~~ 84 (751)
.+||++|.++ ...++++. ....+..|+|||||++|||++.. .+..+||++++.+|+.++++..+.
T Consensus 176 ~~L~~~D~dG----~~~~~l~~--~~~~v~~p~wSPDG~~la~~s~~-------~~~~~I~~~dl~~g~~~~l~~~~g-- 240 (427)
T PRK02889 176 YQLQISDADG----QNAQSALS--SPEPIISPAWSPDGTKLAYVSFE-------SKKPVVYVHDLATGRRRVVANFKG-- 240 (427)
T ss_pred cEEEEECCCC----CCceEecc--CCCCcccceEcCCCCEEEEEEcc-------CCCcEEEEEECCCCCEEEeecCCC--
Confidence 4799999877 67777763 23357899999999999998742 345789999999999999875554
Q ss_pred ccceeeeeEEecCCcEEEEeecCCCCCCCCCCCCCCCCceeeccccccccchhhhhccCCccchhhhhhheeeEEEEEcC
Q 004475 85 LNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL 164 (751)
Q Consensus 85 ~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 164 (751)
....++|||||+.|+|..... ...+||.+++
T Consensus 241 ---~~~~~~~SPDG~~la~~~~~~----------------------------------------------g~~~Iy~~d~ 271 (427)
T PRK02889 241 ---SNSAPAWSPDGRTLAVALSRD----------------------------------------------GNSQIYTVNA 271 (427)
T ss_pred ---CccceEECCCCCEEEEEEccC----------------------------------------------CCceEEEEEC
Confidence 235789999999999974321 1158999999
Q ss_pred -CCCceecCCC-ceEEeeeeCCCCceEEEEEecCCcccccccCCCceeEEEEeCCCceeeeeccCCCCCCCCCccCCccC
Q 004475 165 -DGTAKDFGTP-AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVRE 242 (751)
Q Consensus 165 -~G~~~~lt~~-~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~ 242 (751)
+++.++++.. .....+.|||||++|+|.+.... ..+||.++++++..++++.....
T Consensus 272 ~~~~~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g----------~~~Iy~~~~~~g~~~~lt~~g~~------------ 329 (427)
T PRK02889 272 DGSGLRRLTQSSGIDTEPFFSPDGRSIYFTSDRGG----------APQIYRMPASGGAAQRVTFTGSY------------ 329 (427)
T ss_pred CCCCcEECCCCCCCCcCeEEcCCCCEEEEEecCCC----------CcEEEEEECCCCceEEEecCCCC------------
Confidence 5578888876 45567899999999999765321 34789999888777766532111
Q ss_pred CCceeeeecCCCceEEEEEeccCCCCccccCcccceeeccCCCCCCCCceEeEeeceeEE-EEEecCCceEEEeeeeccc
Q 004475 243 GMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFS-VSWCDDSLALVNETWYKTS 321 (751)
Q Consensus 243 ~~~~~~~spdG~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~-~~~spdg~~l~~~~~~~~~ 321 (751)
.....|||||++ |++++... ...+|++++++ ++..+.++... ... +.|||||+.|+|.++.. +
T Consensus 330 -~~~~~~SpDG~~-Ia~~s~~~---------g~~~I~v~d~~---~g~~~~lt~~~-~~~~p~~spdg~~l~~~~~~~-g 393 (427)
T PRK02889 330 -NTSPRISPDGKL-LAYISRVG---------GAFKLYVQDLA---TGQVTALTDTT-RDESPSFAPNGRYILYATQQG-G 393 (427)
T ss_pred -cCceEECCCCCE-EEEEEccC---------CcEEEEEEECC---CCCeEEccCCC-CccCceECCCCCEEEEEEecC-C
Confidence 124699999999 77765221 12379999986 45566666443 235 99999999999998654 3
Q ss_pred ceeEEEecCCCC
Q 004475 322 QTRTWLVCPGSK 333 (751)
Q Consensus 322 ~~~l~~~~~~~~ 333 (751)
...|+.+++++.
T Consensus 394 ~~~l~~~~~~g~ 405 (427)
T PRK02889 394 RSVLAAVSSDGR 405 (427)
T ss_pred CEEEEEEECCCC
Confidence 468999999763
No 17
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.91 E-value=8.1e-23 Score=218.54 Aligned_cols=235 Identities=14% Similarity=0.099 Sum_probs=172.9
Q ss_pred cceeEEeecCCCCCCCCcccccCCCCcccccceeecCCCCeEEEEEeecccccccCCceeEEEEEcCCCCeeeccCCCCc
Q 004475 4 FTGIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDI 83 (751)
Q Consensus 4 ~~~~~~~~~~~~~~~g~~~~l~~~~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~~~~~l~i~~~~~g~~~~lt~~~~~ 83 (751)
..+|+++|.++ +..++|+. ....+..|+|||||++|||++.. .+..+||++++++|+.++++.....
T Consensus 183 ~~~l~i~D~~g----~~~~~lt~--~~~~v~~p~wSpDg~~la~~s~~-------~~~~~l~~~dl~~g~~~~l~~~~g~ 249 (433)
T PRK04922 183 RYALQVADSDG----YNPQTILR--SAEPILSPAWSPDGKKLAYVSFE-------RGRSAIYVQDLATGQRELVASFRGI 249 (433)
T ss_pred eEEEEEECCCC----CCceEeec--CCCccccccCCCCCCEEEEEecC-------CCCcEEEEEECCCCCEEEeccCCCC
Confidence 34799999988 88888874 33358899999999999998642 3457999999999999999765542
Q ss_pred cccceeeeeEEecCCcEEEEeecCCCCCCCCCCCCCCCCceeeccccccccchhhhhccCCccchhhhhhheeeEEEEEc
Q 004475 84 CLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGS 163 (751)
Q Consensus 84 ~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 163 (751)
...++|||||+.|+|..... ...+||+++
T Consensus 250 -----~~~~~~SpDG~~l~~~~s~~----------------------------------------------g~~~Iy~~d 278 (433)
T PRK04922 250 -----NGAPSFSPDGRRLALTLSRD----------------------------------------------GNPEIYVMD 278 (433)
T ss_pred -----ccCceECCCCCEEEEEEeCC----------------------------------------------CCceEEEEE
Confidence 34679999999999874321 115899999
Q ss_pred C-CCCceecCCC-ceEEeeeeCCCCceEEEEEecCCcccccccCCCceeEEEEeCCCceeeeeccCCCCCCCCCccCCcc
Q 004475 164 L-DGTAKDFGTP-AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVR 241 (751)
Q Consensus 164 ~-~G~~~~lt~~-~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~ 241 (751)
+ +|+.++++.. .....++|||||++|+|.+.... ..+||++++++++.++++....
T Consensus 279 ~~~g~~~~lt~~~~~~~~~~~spDG~~l~f~sd~~g----------~~~iy~~dl~~g~~~~lt~~g~------------ 336 (433)
T PRK04922 279 LGSRQLTRLTNHFGIDTEPTWAPDGKSIYFTSDRGG----------RPQIYRVAASGGSAERLTFQGN------------ 336 (433)
T ss_pred CCCCCeEECccCCCCccceEECCCCCEEEEEECCCC----------CceEEEEECCCCCeEEeecCCC------------
Confidence 9 6688888876 44568999999999999875421 2479999998887777653211
Q ss_pred CCCceeeeecCCCceEEEEEeccCCCCccccCcccceeeccCCCCCCCCceEeEeeceeEE-EEEecCCceEEEeeeecc
Q 004475 242 EGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFS-VSWCDDSLALVNETWYKT 320 (751)
Q Consensus 242 ~~~~~~~~spdG~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~-~~~spdg~~l~~~~~~~~ 320 (751)
....++|||||++ |++.... ..+..|++++++ ++..+.++... ... +.|||||+.|+|.++. .
T Consensus 337 -~~~~~~~SpDG~~-Ia~~~~~---------~~~~~I~v~d~~---~g~~~~Lt~~~-~~~~p~~spdG~~i~~~s~~-~ 400 (433)
T PRK04922 337 -YNARASVSPDGKK-IAMVHGS---------GGQYRIAVMDLS---TGSVRTLTPGS-LDESPSFAPNGSMVLYATRE-G 400 (433)
T ss_pred -CccCEEECCCCCE-EEEEECC---------CCceeEEEEECC---CCCeEECCCCC-CCCCceECCCCCEEEEEEec-C
Confidence 1225699999999 7776421 122479999986 55666666543 334 8999999999998865 3
Q ss_pred cceeEEEecCCCCCCcceeeee
Q 004475 321 SQTRTWLVCPGSKDVAPRVLFD 342 (751)
Q Consensus 321 ~~~~l~~~~~~~~~~~~~~l~~ 342 (751)
+...||+++++++ ..+.+..
T Consensus 401 g~~~L~~~~~~g~--~~~~l~~ 420 (433)
T PRK04922 401 GRGVLAAVSTDGR--VRQRLVS 420 (433)
T ss_pred CceEEEEEECCCC--ceEEccc
Confidence 4568999999873 4455543
No 18
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.91 E-value=2.3e-22 Score=215.04 Aligned_cols=251 Identities=16% Similarity=0.181 Sum_probs=178.8
Q ss_pred CCeEEEEEeecccccccCCceeEEEEEcCCCCeeeccCCCCccccceeeeeEEecCCcEEEEeecCCCCCCCCCCCCCCC
Q 004475 42 GKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLG 121 (751)
Q Consensus 42 G~~iaf~~~~~~~~~~~~~~~~l~i~~~~~g~~~~lt~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~ 121 (751)
+.+|||+....+ ......+||++|.++++.++||.+.. .+..++|||||+.|+|.+....
T Consensus 167 ~~~ia~v~~~~~---~~~~~~~l~i~D~~g~~~~~lt~~~~-----~v~~p~wSpDg~~la~~s~~~~------------ 226 (433)
T PRK04922 167 WTRIAYVTVSGA---GGAMRYALQVADSDGYNPQTILRSAE-----PILSPAWSPDGKKLAYVSFERG------------ 226 (433)
T ss_pred cceEEEEEEeCC---CCCceEEEEEECCCCCCceEeecCCC-----ccccccCCCCCCEEEEEecCCC------------
Confidence 457999976321 11335689999999888999987654 3567899999999999864311
Q ss_pred CceeeccccccccchhhhhccCCccchhhhhhheeeEEEEEcC-CCCceecCCC-ceEEeeeeCCCCceEEEEEecCCcc
Q 004475 122 PKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DGTAKDFGTP-AVYTAVEPSPDQKYVLITSMHRPYS 199 (751)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~G~~~~lt~~-~~~~~~~~SpDG~~i~~~~~~~~~~ 199 (751)
..+||++++ +|+.++++.. +....++|||||++|+|......
T Consensus 227 ----------------------------------~~~l~~~dl~~g~~~~l~~~~g~~~~~~~SpDG~~l~~~~s~~g-- 270 (433)
T PRK04922 227 ----------------------------------RSAIYVQDLATGQRELVASFRGINGAPSFSPDGRRLALTLSRDG-- 270 (433)
T ss_pred ----------------------------------CcEEEEEECCCCCEEEeccCCCCccCceECCCCCEEEEEEeCCC--
Confidence 158999999 6677778765 44557899999999998764321
Q ss_pred cccccCCCceeEEEEeCCCceeeeeccCCCCCCCCCccCCccCCCceeeeecCCCceEEEEEeccCCCCccccCccccee
Q 004475 200 YKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIY 279 (751)
Q Consensus 200 ~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~spdG~~~i~~~~~~~~~~~~~~~~~~~~l~ 279 (751)
..+||++++++++.++++..... ...++|||||++ |++.+.. ....+||
T Consensus 271 --------~~~Iy~~d~~~g~~~~lt~~~~~-------------~~~~~~spDG~~-l~f~sd~---------~g~~~iy 319 (433)
T PRK04922 271 --------NPEIYVMDLGSRQLTRLTNHFGI-------------DTEPTWAPDGKS-IYFTSDR---------GGRPQIY 319 (433)
T ss_pred --------CceEEEEECCCCCeEECccCCCC-------------ccceEECCCCCE-EEEEECC---------CCCceEE
Confidence 35799999999888877654322 125699999999 7776522 1224799
Q ss_pred eccCCCCCCCCceEeEeeceeEE-EEEecCCceEEEeeeecccceeEEEecCCCCCCcceeeeecccccccCCCCCCCee
Q 004475 280 TQPAEPAEGEKPEILHKLDLRFS-VSWCDDSLALVNETWYKTSQTRTWLVCPGSKDVAPRVLFDRVFENVYSDPGSPMMT 358 (751)
Q Consensus 280 ~~~~~~~~~~~~~~l~~~~~~~~-~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 358 (751)
+++++ ++..+.++....... ++|||||+.|+|.... ....+|+++++.++ ..+.++..... .. +.
T Consensus 320 ~~dl~---~g~~~~lt~~g~~~~~~~~SpDG~~Ia~~~~~-~~~~~I~v~d~~~g--~~~~Lt~~~~~--~~------p~ 385 (433)
T PRK04922 320 RVAAS---GGSAERLTFQGNYNARASVSPDGKKIAMVHGS-GGQYRIAVMDLSTG--SVRTLTPGSLD--ES------PS 385 (433)
T ss_pred EEECC---CCCeEEeecCCCCccCEEECCCCCEEEEEECC-CCceeEEEEECCCC--CeEECCCCCCC--CC------ce
Confidence 99986 556666664443445 8999999999998642 33458999999874 45666643221 11 77
Q ss_pred eCCCCCEEEEeeeecCCcceEEEEccCCCCCCCCCceeEEEecCCCceeEEee
Q 004475 359 RTSTGTNVIAKIKKENDEQIYILLNGRGFTPEGNIPFLDLFDINTGSKERIWE 411 (751)
Q Consensus 359 ~spDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l~~ 411 (751)
|||||+.|+|.+.. .....|+.++++++..+++..
T Consensus 386 ~spdG~~i~~~s~~------------------~g~~~L~~~~~~g~~~~~l~~ 420 (433)
T PRK04922 386 FAPNGSMVLYATRE------------------GGRGVLAAVSTDGRVRQRLVS 420 (433)
T ss_pred ECCCCCEEEEEEec------------------CCceEEEEEECCCCceEEccc
Confidence 99999999998832 234579999997766666643
No 19
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.91 E-value=3.8e-22 Score=212.86 Aligned_cols=248 Identities=18% Similarity=0.155 Sum_probs=176.2
Q ss_pred CeEEEEEeecccccccCCceeEEEEEcCCCCeeeccCCCCccccceeeeeEEecCCcEEEEeecCCCCCCCCCCCCCCCC
Q 004475 43 KRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGP 122 (751)
Q Consensus 43 ~~iaf~~~~~~~~~~~~~~~~l~i~~~~~g~~~~lt~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~ 122 (751)
.+|||+.... ......+||+++.++.+.+++|.... .+..+.|||||++|+|.+...
T Consensus 183 ~riayv~~~~----~~~~~~~l~i~d~dG~~~~~l~~~~~-----~~~~p~wSPDG~~La~~s~~~-------------- 239 (448)
T PRK04792 183 TRIAYVVVND----KDKYPYQLMIADYDGYNEQMLLRSPE-----PLMSPAWSPDGRKLAYVSFEN-------------- 239 (448)
T ss_pred CEEEEEEeeC----CCCCceEEEEEeCCCCCceEeecCCC-----cccCceECCCCCEEEEEEecC--------------
Confidence 5888987532 11234699999999988999987765 256789999999999986431
Q ss_pred ceeeccccccccchhhhhccCCccchhhhhhheeeEEEEEcC-CCCceecCCC-ceEEeeeeCCCCceEEEEEecCCccc
Q 004475 123 KIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DGTAKDFGTP-AVYTAVEPSPDQKYVLITSMHRPYSY 200 (751)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~G~~~~lt~~-~~~~~~~~SpDG~~i~~~~~~~~~~~ 200 (751)
...+||++|+ +|+.++++.. .....++|||||++|+|......
T Consensus 240 --------------------------------g~~~L~~~dl~tg~~~~lt~~~g~~~~~~wSPDG~~La~~~~~~g--- 284 (448)
T PRK04792 240 --------------------------------RKAEIFVQDIYTQVREKVTSFPGINGAPRFSPDGKKLALVLSKDG--- 284 (448)
T ss_pred --------------------------------CCcEEEEEECCCCCeEEecCCCCCcCCeeECCCCCEEEEEEeCCC---
Confidence 1158999999 6677788765 44457899999999999764421
Q ss_pred ccccCCCceeEEEEeCCCceeeeeccCCCCCCCCCccCCccCCCceeeeecCCCceEEEEEeccCCCCccccCcccceee
Q 004475 201 KVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYT 280 (751)
Q Consensus 201 ~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~spdG~~~i~~~~~~~~~~~~~~~~~~~~l~~ 280 (751)
..+||++|+++++.++++..... ...++|||||++ |++.+.. ....+||+
T Consensus 285 -------~~~Iy~~dl~tg~~~~lt~~~~~-------------~~~p~wSpDG~~-I~f~s~~---------~g~~~Iy~ 334 (448)
T PRK04792 285 -------QPEIYVVDIATKALTRITRHRAI-------------DTEPSWHPDGKS-LIFTSER---------GGKPQIYR 334 (448)
T ss_pred -------CeEEEEEECCCCCeEECccCCCC-------------ccceEECCCCCE-EEEEECC---------CCCceEEE
Confidence 45799999999888877654322 225699999999 7776522 12348999
Q ss_pred ccCCCCCCCCceEeEeeceeEE-EEEecCCceEEEeeeecccceeEEEecCCCCCCcceeeeecccccccCCCCCCCeee
Q 004475 281 QPAEPAEGEKPEILHKLDLRFS-VSWCDDSLALVNETWYKTSQTRTWLVCPGSKDVAPRVLFDRVFENVYSDPGSPMMTR 359 (751)
Q Consensus 281 ~~~~~~~~~~~~~l~~~~~~~~-~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 359 (751)
++++ ++..+.++....... +.|||||+.|+|.... ....+||+++++++ ..+.++..... .. ++|
T Consensus 335 ~dl~---~g~~~~Lt~~g~~~~~~~~SpDG~~l~~~~~~-~g~~~I~~~dl~~g--~~~~lt~~~~d------~~--ps~ 400 (448)
T PRK04792 335 VNLA---SGKVSRLTFEGEQNLGGSITPDGRSMIMVNRT-NGKFNIARQDLETG--AMQVLTSTRLD------ES--PSV 400 (448)
T ss_pred EECC---CCCEEEEecCCCCCcCeeECCCCCEEEEEEec-CCceEEEEEECCCC--CeEEccCCCCC------CC--ceE
Confidence 9986 556666664333334 8999999999997753 34468999999884 44556543211 11 679
Q ss_pred CCCCCEEEEeeeecCCcceEEEEccCCCCCCCCCceeEEEecCCCceeEEe
Q 004475 360 TSTGTNVIAKIKKENDEQIYILLNGRGFTPEGNIPFLDLFDINTGSKERIW 410 (751)
Q Consensus 360 spDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l~ 410 (751)
||||+.|+|.... .....|++++++++..+++.
T Consensus 401 spdG~~I~~~~~~------------------~g~~~l~~~~~~G~~~~~l~ 433 (448)
T PRK04792 401 APNGTMVIYSTTY------------------QGKQVLAAVSIDGRFKARLP 433 (448)
T ss_pred CCCCCEEEEEEec------------------CCceEEEEEECCCCceEECc
Confidence 9999999998832 12346888898655555553
No 20
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.91 E-value=3.7e-22 Score=212.52 Aligned_cols=244 Identities=17% Similarity=0.213 Sum_probs=173.3
Q ss_pred CeEEEEEeecccccccCCceeEEEEEcCCCCeeeccCCCCccccceeeeeEEecCCcEEEEeecCCCCCCCCCCCCCCCC
Q 004475 43 KRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGP 122 (751)
Q Consensus 43 ~~iaf~~~~~~~~~~~~~~~~l~i~~~~~g~~~~lt~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~ 122 (751)
.+|||+... .+..+||++|.++...++++.... .+..++|||||++|+|.+...
T Consensus 164 ~~iayv~~~-------~~~~~L~~~D~dG~~~~~l~~~~~-----~v~~p~wSPDG~~la~~s~~~-------------- 217 (427)
T PRK02889 164 TRIAYVIKT-------GNRYQLQISDADGQNAQSALSSPE-----PIISPAWSPDGTKLAYVSFES-------------- 217 (427)
T ss_pred cEEEEEEcc-------CCccEEEEECCCCCCceEeccCCC-----CcccceEcCCCCEEEEEEccC--------------
Confidence 579998631 345799999998888888876554 356789999999999986431
Q ss_pred ceeeccccccccchhhhhccCCccchhhhhhheeeEEEEEcC-CCCceecCCC-ceEEeeeeCCCCceEEEEEecCCccc
Q 004475 123 KIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DGTAKDFGTP-AVYTAVEPSPDQKYVLITSMHRPYSY 200 (751)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~G~~~~lt~~-~~~~~~~~SpDG~~i~~~~~~~~~~~ 200 (751)
...+||++|+ +|+.++++.. +....++|||||++|+++.....
T Consensus 218 --------------------------------~~~~I~~~dl~~g~~~~l~~~~g~~~~~~~SPDG~~la~~~~~~g--- 262 (427)
T PRK02889 218 --------------------------------KKPVVYVHDLATGRRRVVANFKGSNSAPAWSPDGRTLAVALSRDG--- 262 (427)
T ss_pred --------------------------------CCcEEEEEECCCCCEEEeecCCCCccceEECCCCCEEEEEEccCC---
Confidence 1158999999 6777788755 55678999999999998754321
Q ss_pred ccccCCCceeEEEEeCCCceeeeeccCCCCCCCCCccCCccCCCceeeeecCCCceEEEEEeccCCCCccccCcccceee
Q 004475 201 KVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYT 280 (751)
Q Consensus 201 ~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~spdG~~~i~~~~~~~~~~~~~~~~~~~~l~~ 280 (751)
..+||+++++++..++++...... ..+.|||||++ |++++.. ....+||.
T Consensus 263 -------~~~Iy~~d~~~~~~~~lt~~~~~~-------------~~~~wSpDG~~-l~f~s~~---------~g~~~Iy~ 312 (427)
T PRK02889 263 -------NSQIYTVNADGSGLRRLTQSSGID-------------TEPFFSPDGRS-IYFTSDR---------GGAPQIYR 312 (427)
T ss_pred -------CceEEEEECCCCCcEECCCCCCCC-------------cCeEEcCCCCE-EEEEecC---------CCCcEEEE
Confidence 357999999888777776543221 24599999999 7776521 12247999
Q ss_pred ccCCCCCCCCceEeEeeceeEE-EEEecCCceEEEeeeecccceeEEEecCCCCCCcceeeeecccccccCCCCCCCeee
Q 004475 281 QPAEPAEGEKPEILHKLDLRFS-VSWCDDSLALVNETWYKTSQTRTWLVCPGSKDVAPRVLFDRVFENVYSDPGSPMMTR 359 (751)
Q Consensus 281 ~~~~~~~~~~~~~l~~~~~~~~-~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 359 (751)
++++ ++..+.++....... +.|||||++|+|.+... ...+|+++++.++ ..+.++..... . .++|
T Consensus 313 ~~~~---~g~~~~lt~~g~~~~~~~~SpDG~~Ia~~s~~~-g~~~I~v~d~~~g--~~~~lt~~~~~--~------~p~~ 378 (427)
T PRK02889 313 MPAS---GGAAQRVTFTGSYNTSPRISPDGKLLAYISRVG-GAFKLYVQDLATG--QVTALTDTTRD--E------SPSF 378 (427)
T ss_pred EECC---CCceEEEecCCCCcCceEECCCCCEEEEEEccC-CcEEEEEEECCCC--CeEEccCCCCc--c------CceE
Confidence 9875 555666654333344 89999999999987532 3458999999884 45666543211 1 1789
Q ss_pred CCCCCEEEEeeeecCCcceEEEEccCCCCCCCCCceeEEEecCCCceeEE
Q 004475 360 TSTGTNVIAKIKKENDEQIYILLNGRGFTPEGNIPFLDLFDINTGSKERI 409 (751)
Q Consensus 360 spDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l 409 (751)
||||+.|+|.... .....|+.+++++....++
T Consensus 379 spdg~~l~~~~~~------------------~g~~~l~~~~~~g~~~~~l 410 (427)
T PRK02889 379 APNGRYILYATQQ------------------GGRSVLAAVSSDGRIKQRL 410 (427)
T ss_pred CCCCCEEEEEEec------------------CCCEEEEEEECCCCceEEe
Confidence 9999999998843 1234788888864444444
No 21
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.90 E-value=2e-22 Score=216.61 Aligned_cols=226 Identities=17% Similarity=0.157 Sum_probs=168.1
Q ss_pred eeEEeecCCCCCCCCcccccCCCCcccccceeecCCCCeEEEEEeecccccccCCceeEEEEEcCCCCeeeccCCCCccc
Q 004475 6 GIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICL 85 (751)
Q Consensus 6 ~~~~~~~~~~~~~g~~~~l~~~~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~~~~~l~i~~~~~g~~~~lt~~~~~~~ 85 (751)
.|+++|.++ +..+.++. .+..+..|+|||||++|||++.. .+..+||++++++|+.++++.....
T Consensus 180 ~l~~~d~~g----~~~~~l~~--~~~~~~~p~wSpDG~~la~~s~~-------~~~~~l~~~~l~~g~~~~l~~~~g~-- 244 (430)
T PRK00178 180 TLQRSDYDG----ARAVTLLQ--SREPILSPRWSPDGKRIAYVSFE-------QKRPRIFVQNLDTGRREQITNFEGL-- 244 (430)
T ss_pred EEEEECCCC----CCceEEec--CCCceeeeeECCCCCEEEEEEcC-------CCCCEEEEEECCCCCEEEccCCCCC--
Confidence 588889888 88888863 33357899999999999998742 3457999999999999999865542
Q ss_pred cceeeeeEEecCCcEEEEeecCCCCCCCCCCCCCCCCceeeccccccccchhhhhccCCccchhhhhhheeeEEEEEcC-
Q 004475 86 NAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL- 164 (751)
Q Consensus 86 ~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~- 164 (751)
...++|||||++|+|..... ...+||++|+
T Consensus 245 ---~~~~~~SpDG~~la~~~~~~----------------------------------------------g~~~Iy~~d~~ 275 (430)
T PRK00178 245 ---NGAPAWSPDGSKLAFVLSKD----------------------------------------------GNPEIYVMDLA 275 (430)
T ss_pred ---cCCeEECCCCCEEEEEEccC----------------------------------------------CCceEEEEECC
Confidence 34689999999999975321 1158999999
Q ss_pred CCCceecCCC-ceEEeeeeCCCCceEEEEEecCCcccccccCCCceeEEEEeCCCceeeeeccCCCCCCCCCccCCccCC
Q 004475 165 DGTAKDFGTP-AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREG 243 (751)
Q Consensus 165 ~G~~~~lt~~-~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 243 (751)
+|+.++++.. .....+.|||||++|+|.+.... ..+||++++++++.++++.... .
T Consensus 276 ~~~~~~lt~~~~~~~~~~~spDg~~i~f~s~~~g----------~~~iy~~d~~~g~~~~lt~~~~-------------~ 332 (430)
T PRK00178 276 SRQLSRVTNHPAIDTEPFWGKDGRTLYFTSDRGG----------KPQIYKVNVNGGRAERVTFVGN-------------Y 332 (430)
T ss_pred CCCeEEcccCCCCcCCeEECCCCCEEEEEECCCC----------CceEEEEECCCCCEEEeecCCC-------------C
Confidence 6688888876 45567899999999999865421 3479999998887777753211 1
Q ss_pred CceeeeecCCCceEEEEEeccCCCCccccCcccceeeccCCCCCCCCceEeEeeceeEE-EEEecCCceEEEeeeecccc
Q 004475 244 MRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFS-VSWCDDSLALVNETWYKTSQ 322 (751)
Q Consensus 244 ~~~~~~spdG~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~-~~~spdg~~l~~~~~~~~~~ 322 (751)
.....|||||++ |+++...+ ....|++++++ ++..+.++... ... +.|||||+.|+|++... +.
T Consensus 333 ~~~~~~Spdg~~-i~~~~~~~---------~~~~l~~~dl~---tg~~~~lt~~~-~~~~p~~spdg~~i~~~~~~~-g~ 397 (430)
T PRK00178 333 NARPRLSADGKT-LVMVHRQD---------GNFHVAAQDLQ---RGSVRILTDTS-LDESPSVAPNGTMLIYATRQQ-GR 397 (430)
T ss_pred ccceEECCCCCE-EEEEEccC---------CceEEEEEECC---CCCEEEccCCC-CCCCceECCCCCEEEEEEecC-Cc
Confidence 124589999999 77765221 12469999986 55666676543 334 89999999999988643 44
Q ss_pred eeEEEecCCCC
Q 004475 323 TRTWLVCPGSK 333 (751)
Q Consensus 323 ~~l~~~~~~~~ 333 (751)
..||+++.++.
T Consensus 398 ~~l~~~~~~g~ 408 (430)
T PRK00178 398 GVLMLVSINGR 408 (430)
T ss_pred eEEEEEECCCC
Confidence 68999999874
No 22
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.90 E-value=8.3e-22 Score=211.79 Aligned_cols=251 Identities=15% Similarity=0.156 Sum_probs=178.5
Q ss_pred CCCeEEEEEeecccccccCCceeEEEEEcCCCCeeeccCCCCccccceeeeeEEecCCcEEEEeecCCCCCCCCCCCCCC
Q 004475 41 DGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPL 120 (751)
Q Consensus 41 DG~~iaf~~~~~~~~~~~~~~~~l~i~~~~~g~~~~lt~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~ 120 (751)
-..+|||++.... ......+||++|.++++.++++.... .+..++|||||++|+|.+...
T Consensus 161 f~~~ia~v~~~~~---~~~~~~~l~~~d~~g~~~~~l~~~~~-----~~~~p~wSpDG~~la~~s~~~------------ 220 (430)
T PRK00178 161 FSTRILYVTAERF---SVNTRYTLQRSDYDGARAVTLLQSRE-----PILSPRWSPDGKRIAYVSFEQ------------ 220 (430)
T ss_pred ceeeEEEEEeeCC---CCCcceEEEEECCCCCCceEEecCCC-----ceeeeeECCCCCEEEEEEcCC------------
Confidence 4568999875321 11234589999999988999876654 256789999999999986431
Q ss_pred CCceeeccccccccchhhhhccCCccchhhhhhheeeEEEEEcC-CCCceecCCC-ceEEeeeeCCCCceEEEEEecCCc
Q 004475 121 GPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DGTAKDFGTP-AVYTAVEPSPDQKYVLITSMHRPY 198 (751)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~G~~~~lt~~-~~~~~~~~SpDG~~i~~~~~~~~~ 198 (751)
...+||++++ +|+.++++.. +....++|||||++|+|......
T Consensus 221 ----------------------------------~~~~l~~~~l~~g~~~~l~~~~g~~~~~~~SpDG~~la~~~~~~g- 265 (430)
T PRK00178 221 ----------------------------------KRPRIFVQNLDTGRREQITNFEGLNGAPAWSPDGSKLAFVLSKDG- 265 (430)
T ss_pred ----------------------------------CCCEEEEEECCCCCEEEccCCCCCcCCeEECCCCCEEEEEEccCC-
Confidence 1158999999 6788888765 45567999999999999765421
Q ss_pred ccccccCCCceeEEEEeCCCceeeeeccCCCCCCCCCccCCccCCCceeeeecCCCceEEEEEeccCCCCccccCcccce
Q 004475 199 SYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDII 278 (751)
Q Consensus 199 ~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~spdG~~~i~~~~~~~~~~~~~~~~~~~~l 278 (751)
..+||++|+++++.++++..... ...+.|||||++ |+|.+.. ....+|
T Consensus 266 ---------~~~Iy~~d~~~~~~~~lt~~~~~-------------~~~~~~spDg~~-i~f~s~~---------~g~~~i 313 (430)
T PRK00178 266 ---------NPEIYVMDLASRQLSRVTNHPAI-------------DTEPFWGKDGRT-LYFTSDR---------GGKPQI 313 (430)
T ss_pred ---------CceEEEEECCCCCeEEcccCCCC-------------cCCeEECCCCCE-EEEEECC---------CCCceE
Confidence 35799999999888877654332 124699999999 7776522 122479
Q ss_pred eeccCCCCCCCCceEeEeeceeEE-EEEecCCceEEEeeeecccceeEEEecCCCCCCcceeeeecccccccCCCCCCCe
Q 004475 279 YTQPAEPAEGEKPEILHKLDLRFS-VSWCDDSLALVNETWYKTSQTRTWLVCPGSKDVAPRVLFDRVFENVYSDPGSPMM 357 (751)
Q Consensus 279 ~~~~~~~~~~~~~~~l~~~~~~~~-~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 357 (751)
|+++++ ++..+.++....... +.|||||+.|+|..... +...|+++++.++ +.+.++..... .. +
T Consensus 314 y~~d~~---~g~~~~lt~~~~~~~~~~~Spdg~~i~~~~~~~-~~~~l~~~dl~tg--~~~~lt~~~~~------~~--p 379 (430)
T PRK00178 314 YKVNVN---GGRAERVTFVGNYNARPRLSADGKTLVMVHRQD-GNFHVAAQDLQRG--SVRILTDTSLD------ES--P 379 (430)
T ss_pred EEEECC---CCCEEEeecCCCCccceEECCCCCEEEEEEccC-CceEEEEEECCCC--CEEEccCCCCC------CC--c
Confidence 999986 555666654433344 89999999999987533 3457999999884 55666643211 11 6
Q ss_pred eeCCCCCEEEEeeeecCCcceEEEEccCCCCCCCCCceeEEEecCCCceeEEe
Q 004475 358 TRTSTGTNVIAKIKKENDEQIYILLNGRGFTPEGNIPFLDLFDINTGSKERIW 410 (751)
Q Consensus 358 ~~spDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l~ 410 (751)
+|||||+.|+|.... ..+..|+.++++++..+++.
T Consensus 380 ~~spdg~~i~~~~~~------------------~g~~~l~~~~~~g~~~~~l~ 414 (430)
T PRK00178 380 SVAPNGTMLIYATRQ------------------QGRGVLMLVSINGRVRLPLP 414 (430)
T ss_pred eECCCCCEEEEEEec------------------CCceEEEEEECCCCceEECc
Confidence 799999999998843 23457888999765554553
No 23
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=99.90 E-value=1.3e-21 Score=190.08 Aligned_cols=364 Identities=15% Similarity=0.153 Sum_probs=229.9
Q ss_pred eeEEeecCCCCCCCCcccccCCCCcccccceeecCCCCeEEEEE-eecccccccCCceeEEEEEcCCCCeeeccCCCCcc
Q 004475 6 GIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSV-RVDEEDNVSSCKLRVWIADAETGEAKPLFESPDIC 84 (751)
Q Consensus 6 ~~~~~~~~~~~~~g~~~~l~~~~~~~~~~~p~~SPDG~~iaf~~-~~~~~~~~~~~~~~l~i~~~~~g~~~~lt~~~~~~ 84 (751)
++|.++|.+ |+.++||+ +..-+..|.+||||++|||.+ .. ..+....+||+++.++|+++++|.....
T Consensus 60 dlWe~slk~----g~~~ritS--~lGVvnn~kf~pdGrkvaf~rv~~----~ss~~taDly~v~~e~Ge~kRiTyfGr~- 128 (668)
T COG4946 60 DLWEYSLKD----GKPLRITS--GLGVVNNPKFSPDGRKVAFSRVML----GSSLQTADLYVVPSEDGEAKRITYFGRR- 128 (668)
T ss_pred HHHHhhhcc----CCeeEEec--ccceeccccCCCCCcEEEEEEEEe----cCCCccccEEEEeCCCCcEEEEEEeccc-
Confidence 688899988 99999983 433578999999999999954 32 2235668999999999999999987432
Q ss_pred ccceeeeeEEecCCcEEEEeecCCCCCCCC-------------CCCCCCCCceeec-cccccccchhhhhccCCccchh-
Q 004475 85 LNAVFGSFVWVNNSTLLIFTIPSSRRDPPK-------------KTMVPLGPKIQSN-EQKNIIISRMTDNLLKDEYDES- 149 (751)
Q Consensus 85 ~~~~~~~~~wspDg~~l~~~~~~~~~~~~~-------------~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~- 149 (751)
......|+|||+.|+.+-.. ..++. ...+..||..... ..+.+...|.+.++..++...+
T Consensus 129 ---fT~VaG~~~dg~iiV~TD~~--tPF~q~~~lYkv~~dg~~~e~LnlGpathiv~~dg~ivigRntydLP~WK~YkGG 203 (668)
T COG4946 129 ---FTRVAGWIPDGEIIVSTDFH--TPFSQWTELYKVNVDGIKTEPLNLGPATHIVIKDGIIVIGRNTYDLPHWKGYKGG 203 (668)
T ss_pred ---cceeeccCCCCCEEEEeccC--CCcccceeeeEEccCCceeeeccCCceeeEEEeCCEEEEccCcccCcccccccCC
Confidence 23467899999988876322 11110 1123455554433 3445555666666555544321
Q ss_pred ----hh---------------------------------hhheeeEEEEEcCCC-CceecCCCceEEeeeeCCCCceEEE
Q 004475 150 ----LF---------------------------------DYYTTAQLVLGSLDG-TAKDFGTPAVYTAVEPSPDQKYVLI 191 (751)
Q Consensus 150 ----~~---------------------------------~~~~~~~l~~~~~~G-~~~~lt~~~~~~~~~~SpDG~~i~~ 191 (751)
.| ++.+.++||.+|++| ..++.|+..++..-..+.|||+|+|
T Consensus 204 trGklWis~d~g~tFeK~vdl~~~vS~PmIV~~RvYFlsD~eG~GnlYSvdldGkDlrrHTnFtdYY~R~~nsDGkrIvF 283 (668)
T COG4946 204 TRGKLWISSDGGKTFEKFVDLDGNVSSPMIVGERVYFLSDHEGVGNLYSVDLDGKDLRRHTNFTDYYPRNANSDGKRIVF 283 (668)
T ss_pred ccceEEEEecCCcceeeeeecCCCcCCceEEcceEEEEecccCccceEEeccCCchhhhcCCchhccccccCCCCcEEEE
Confidence 11 222456899999988 7888888877777778999999999
Q ss_pred EEecCCcccccccCCCceeEEEEeCCCceeeeeccC-CCC--CCCCCccCCccCCCceeeeecCCCceEEEEEec-----
Q 004475 192 TSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDL-PPA--EDIPVCYNSVREGMRSISWRADKPSTLYWVEAQ----- 263 (751)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~-~~~--~~~~~~~~~~~~~~~~~~~spdG~~~i~~~~~~----- 263 (751)
.. ..+||++|+++..++.|.-. |.. ...+...... ...-.++. -+|.. |++.+..
T Consensus 284 q~--------------~GdIylydP~td~lekldI~lpl~rk~k~~k~~~ps-kyledfa~-~~Gd~-ia~VSRGkaFi~ 346 (668)
T COG4946 284 QN--------------AGDIYLYDPETDSLEKLDIGLPLDRKKKQPKFVNPS-KYLEDFAV-VNGDY-IALVSRGKAFIM 346 (668)
T ss_pred ec--------------CCcEEEeCCCcCcceeeecCCccccccccccccCHH-Hhhhhhcc-CCCcE-EEEEecCcEEEE
Confidence 74 34799999998877766433 322 1111110000 00000111 12333 3332211
Q ss_pred ---cCCC-------------------Ccc-ccCcccceeeccCCCCCCCCceEeEeeceeEE-EEEecCCceEEEeeeec
Q 004475 264 ---DRGD-------------------ANV-EVSPRDIIYTQPAEPAEGEKPEILHKLDLRFS-VSWCDDSLALVNETWYK 319 (751)
Q Consensus 264 ---~~~~-------------------~~~-~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~-~~~spdg~~l~~~~~~~ 319 (751)
++.. ..+ -......|-+++.+ ++..+.+...-+.+. +..||||+.++.+.
T Consensus 347 ~~~~~~~iqv~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~---~~e~kr~e~~lg~I~av~vs~dGK~~vvaN--- 420 (668)
T COG4946 347 RPWDGYSIQVGKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKD---GGEVKRIEKDLGNIEAVKVSPDGKKVVVAN--- 420 (668)
T ss_pred CCCCCeeEEcCCCCceEEEEEccCCcceEEeccCCceEEEEecC---CceEEEeeCCccceEEEEEcCCCcEEEEEc---
Confidence 0000 000 01111255566655 666777777777887 89999999887754
Q ss_pred ccceeEEEecCCCCCCcceeeeecccccccCCCCCCCeeeCCCCCEEEEeeeecCCcceEEEEccCCCCCCCCCceeEEE
Q 004475 320 TSQTRTWLVCPGSKDVAPRVLFDRVFENVYSDPGSPMMTRTSTGTNVIAKIKKENDEQIYILLNGRGFTPEGNIPFLDLF 399 (751)
Q Consensus 320 ~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~spDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 399 (751)
...+||+++++++ .+ ++.+.+....... +.|+|++++|++.... + -...+|.++
T Consensus 421 -dr~el~vididng--nv-~~idkS~~~lItd-----f~~~~nsr~iAYafP~----g-------------y~tq~Ikly 474 (668)
T COG4946 421 -DRFELWVIDIDNG--NV-RLIDKSEYGLITD-----FDWHPNSRWIAYAFPE----G-------------YYTQSIKLY 474 (668)
T ss_pred -CceEEEEEEecCC--Ce-eEecccccceeEE-----EEEcCCceeEEEecCc----c-------------eeeeeEEEE
Confidence 3468999999995 33 3333332221111 8899999999998832 1 124489999
Q ss_pred ecCCCceeEEeeccchhhhhceeeeecCCcceeeccCCCEEEEEEec
Q 004475 400 DINTGSKERIWESNREKYFETAVALVFGQGEEDINLNQLKILTSKES 446 (751)
Q Consensus 400 d~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~ 446 (751)
|..+++...++..... ...++|.|||+.|+|-...
T Consensus 475 dm~~~Kiy~vTT~ta~------------DfsPaFD~d~ryLYfLs~R 509 (668)
T COG4946 475 DMDGGKIYDVTTPTAY------------DFSPAFDPDGRYLYFLSAR 509 (668)
T ss_pred ecCCCeEEEecCCccc------------ccCcccCCCCcEEEEEecc
Confidence 9999988877665421 2236899999999987644
No 24
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.88 E-value=6.6e-21 Score=203.33 Aligned_cols=241 Identities=16% Similarity=0.104 Sum_probs=167.6
Q ss_pred cceeEEeecCCCCCCCCcccccCCCCcccccceeecCCCCeEEEEEeecccccccCCceeEEEEEcCCCCeeeccCCCCc
Q 004475 4 FTGIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDI 83 (751)
Q Consensus 4 ~~~~~~~~~~~~~~~g~~~~l~~~~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~~~~~l~i~~~~~g~~~~lt~~~~~ 83 (751)
...|+++|.++ +..+.++. ....+..|+|||||++|||++.. .+..+||++++.+|+.++++.....
T Consensus 183 ~~~i~i~d~dg----~~~~~lt~--~~~~v~~p~wSPDG~~la~~s~~-------~~~~~i~i~dl~tg~~~~l~~~~g~ 249 (429)
T PRK01742 183 PYEVRVADYDG----FNQFIVNR--SSQPLMSPAWSPDGSKLAYVSFE-------NKKSQLVVHDLRSGARKVVASFRGH 249 (429)
T ss_pred eEEEEEECCCC----CCceEecc--CCCccccceEcCCCCEEEEEEec-------CCCcEEEEEeCCCCceEEEecCCCc
Confidence 46899999988 77777763 23358899999999999998741 3457899999999988888765442
Q ss_pred cccceeeeeEEecCCcEEEEeecCCCCCCCCCCCCCCCCceeeccccccccchhhhhccCCccchhhhhhheeeEEEEEc
Q 004475 84 CLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGS 163 (751)
Q Consensus 84 ~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 163 (751)
...++|||||++|++..... +..+||+++
T Consensus 250 -----~~~~~wSPDG~~La~~~~~~----------------------------------------------g~~~Iy~~d 278 (429)
T PRK01742 250 -----NGAPAFSPDGSRLAFASSKD----------------------------------------------GVLNIYVMG 278 (429)
T ss_pred -----cCceeECCCCCEEEEEEecC----------------------------------------------CcEEEEEEE
Confidence 24679999999999974311 114799999
Q ss_pred C-CCCceecCCC-ceEEeeeeCCCCceEEEEEecCCcccccccCCCceeEEEEeCCCceeeeeccCCCCCCCCCccCCcc
Q 004475 164 L-DGTAKDFGTP-AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVR 241 (751)
Q Consensus 164 ~-~G~~~~lt~~-~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~ 241 (751)
+ +|+.++++.. .....+.|||||++|+|.+.... ..+||.++..++..+.+. ...
T Consensus 279 ~~~~~~~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g----------~~~I~~~~~~~~~~~~l~-~~~------------ 335 (429)
T PRK01742 279 ANGGTPSQLTSGAGNNTEPSWSPDGQSILFTSDRSG----------SPQVYRMSASGGGASLVG-GRG------------ 335 (429)
T ss_pred CCCCCeEeeccCCCCcCCEEECCCCCEEEEEECCCC----------CceEEEEECCCCCeEEec-CCC------------
Confidence 9 5688888876 55678999999999999865421 347888888777655541 110
Q ss_pred CCCceeeeecCCCceEEEEEeccCCCCccccCcccceeeccCCCCCCCCceEeEeeceeEE-EEEecCCceEEEeeeecc
Q 004475 242 EGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFS-VSWCDDSLALVNETWYKT 320 (751)
Q Consensus 242 ~~~~~~~~spdG~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~-~~~spdg~~l~~~~~~~~ 320 (751)
....|||||++ |++... ..++++++. ++..+.++.. .... +.|||||+.|+|++.. .
T Consensus 336 ---~~~~~SpDG~~-ia~~~~-------------~~i~~~Dl~---~g~~~~lt~~-~~~~~~~~sPdG~~i~~~s~~-g 393 (429)
T PRK01742 336 ---YSAQISADGKT-LVMING-------------DNVVKQDLT---SGSTEVLSST-FLDESPSISPNGIMIIYSSTQ-G 393 (429)
T ss_pred ---CCccCCCCCCE-EEEEcC-------------CCEEEEECC---CCCeEEecCC-CCCCCceECCCCCEEEEEEcC-C
Confidence 13589999999 777531 357778875 4444455433 2335 8999999999998853 2
Q ss_pred cceeEEEecCCCCCCcceeeeecccccccCCCCCCCeeeCCC
Q 004475 321 SQTRTWLVCPGSKDVAPRVLFDRVFENVYSDPGSPMMTRTST 362 (751)
Q Consensus 321 ~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~spD 362 (751)
....+++++.++. ..+.+..... .+.. ++|||-
T Consensus 394 ~~~~l~~~~~~G~--~~~~l~~~~g-~~~~------p~wsp~ 426 (429)
T PRK01742 394 LGKVLQLVSADGR--FKARLPGSDG-QVKF------PAWSPY 426 (429)
T ss_pred CceEEEEEECCCC--ceEEccCCCC-CCCC------cccCCC
Confidence 3345666777663 4455543222 1222 778874
No 25
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.87 E-value=2.2e-20 Score=199.34 Aligned_cols=243 Identities=21% Similarity=0.179 Sum_probs=165.9
Q ss_pred CCeEEEEEeecccccccCCceeEEEEEcCCCCeeeccCCCCccccceeeeeEEecCCcEEEEeecCCCCCCCCCCCCCCC
Q 004475 42 GKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLG 121 (751)
Q Consensus 42 G~~iaf~~~~~~~~~~~~~~~~l~i~~~~~g~~~~lt~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~ 121 (751)
+++|||++.+.. .....+||++|.++...++|+.+.. .+..++|||||++|+|.+....
T Consensus 168 ~~ria~v~~~~~----~~~~~~i~i~d~dg~~~~~lt~~~~-----~v~~p~wSPDG~~la~~s~~~~------------ 226 (429)
T PRK01742 168 RTRIAYVVQKNG----GSQPYEVRVADYDGFNQFIVNRSSQ-----PLMSPAWSPDGSKLAYVSFENK------------ 226 (429)
T ss_pred CCEEEEEEEEcC----CCceEEEEEECCCCCCceEeccCCC-----ccccceEcCCCCEEEEEEecCC------------
Confidence 579999986321 1234899999999988888887654 3567899999999999864211
Q ss_pred CceeeccccccccchhhhhccCCccchhhhhhheeeEEEEEcC-CCCceecCCC-ceEEeeeeCCCCceEEEEEecCCcc
Q 004475 122 PKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DGTAKDFGTP-AVYTAVEPSPDQKYVLITSMHRPYS 199 (751)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~G~~~~lt~~-~~~~~~~~SpDG~~i~~~~~~~~~~ 199 (751)
..+||++|+ +|+.++++.. +....++|||||++|++......
T Consensus 227 ----------------------------------~~~i~i~dl~tg~~~~l~~~~g~~~~~~wSPDG~~La~~~~~~g-- 270 (429)
T PRK01742 227 ----------------------------------KSQLVVHDLRSGARKVVASFRGHNGAPAFSPDGSRLAFASSKDG-- 270 (429)
T ss_pred ----------------------------------CcEEEEEeCCCCceEEEecCCCccCceeECCCCCEEEEEEecCC--
Confidence 158999999 6676677654 44557999999999999764321
Q ss_pred cccccCCCceeEEEEeCCCceeeeeccCCCCCCCCCccCCccCCCceeeeecCCCceEEEEEeccCCCCccccCccccee
Q 004475 200 YKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIY 279 (751)
Q Consensus 200 ~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~spdG~~~i~~~~~~~~~~~~~~~~~~~~l~ 279 (751)
..+||++|++++..++++..... ...+.|||||++ |++++.. ....+||
T Consensus 271 --------~~~Iy~~d~~~~~~~~lt~~~~~-------------~~~~~wSpDG~~-i~f~s~~---------~g~~~I~ 319 (429)
T PRK01742 271 --------VLNIYVMGANGGTPSQLTSGAGN-------------NTEPSWSPDGQS-ILFTSDR---------SGSPQVY 319 (429)
T ss_pred --------cEEEEEEECCCCCeEeeccCCCC-------------cCCEEECCCCCE-EEEEECC---------CCCceEE
Confidence 34699999998888877654332 235699999999 7776522 1224788
Q ss_pred eccCCCCCCCCceEeEeeceeEEEEEecCCceEEEeeeecccceeEEEecCCCCCCcceeeeecccccccCCCCCCCeee
Q 004475 280 TQPAEPAEGEKPEILHKLDLRFSVSWCDDSLALVNETWYKTSQTRTWLVCPGSKDVAPRVLFDRVFENVYSDPGSPMMTR 359 (751)
Q Consensus 280 ~~~~~~~~~~~~~~l~~~~~~~~~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 359 (751)
.++.+ ++..+.+. ... ..+.|||||+.|++... ..++.+|+.++ ..+.++.. .. ... ++|
T Consensus 320 ~~~~~---~~~~~~l~-~~~-~~~~~SpDG~~ia~~~~-----~~i~~~Dl~~g--~~~~lt~~-~~-~~~------~~~ 379 (429)
T PRK01742 320 RMSAS---GGGASLVG-GRG-YSAQISADGKTLVMING-----DNVVKQDLTSG--STEVLSST-FL-DES------PSI 379 (429)
T ss_pred EEECC---CCCeEEec-CCC-CCccCCCCCCEEEEEcC-----CCEEEEECCCC--CeEEecCC-CC-CCC------ceE
Confidence 88875 44444442 222 22789999999998763 35778888774 33444432 11 111 779
Q ss_pred CCCCCEEEEeeeecCCcceEEEEccCCCCCCCCCceeEEEecCCCceeEEe
Q 004475 360 TSTGTNVIAKIKKENDEQIYILLNGRGFTPEGNIPFLDLFDINTGSKERIW 410 (751)
Q Consensus 360 spDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l~ 410 (751)
||||+.|++.+.+ +....+++++.+++..++|.
T Consensus 380 sPdG~~i~~~s~~------------------g~~~~l~~~~~~G~~~~~l~ 412 (429)
T PRK01742 380 SPNGIMIIYSSTQ------------------GLGKVLQLVSADGRFKARLP 412 (429)
T ss_pred CCCCCEEEEEEcC------------------CCceEEEEEECCCCceEEcc
Confidence 9999999998832 22234566677655555553
No 26
>COG1505 Serine proteases of the peptidase family S9A [Amino acid transport and metabolism]
Probab=99.87 E-value=3.6e-19 Score=180.87 Aligned_cols=288 Identities=19% Similarity=0.173 Sum_probs=217.5
Q ss_pred eccCCCEEEEEEecCCCCCeEEEEEcCCCceeEeecCCCCCCCccCCceEEEEEEcCCCceEEEEEEcCCCCCCCCCCCc
Q 004475 433 INLNQLKILTSKESKTEITQYHILSWPLKKSSQITNFPHPYPTLASLQKEMIKYQRKDGVPLTATLYLPPGYDQSKDGPL 512 (751)
Q Consensus 433 ~s~dg~~l~~~~~~~~~~~~l~~~~~~~g~~~~lt~~~~~~~~~~~~~~e~i~~~~~~~~~i~~~~~~P~~~~~~~~~~~ 512 (751)
-+.+|..+.+...+...|+.+|+.++.+++.+.+...+.. .+.+.+.+|+....+.||.+|+.++.. ++.... +.
T Consensus 347 ~~~~g~ev~l~~t~F~tP~~~~r~~~~~~eLe~ik~~p~~-FDa~~~~veQ~~atSkDGT~IPYFiv~-K~~~~d---~~ 421 (648)
T COG1505 347 ADKDGDEVFLAFTSFTTPSTLYRLDLFGGELEVIREQPVQ-FDADNYEVEQFFATSKDGTRIPYFIVR-KGAKKD---EN 421 (648)
T ss_pred CCCCCcEEEEEeecccCCCceEEEecCCceehhhhhccCC-cCccCceEEEEEEEcCCCccccEEEEe-cCCcCC---CC
Confidence 3557888999999999999999999999988887765432 344568899999999999999999998 554332 47
Q ss_pred cEEEEEcCCCCcCcccCCcccCCCCccCCCCchHHHHHHhCCeEEEEcCCCCCCCCCCCCCCc---hhHHHHHHHHHHHH
Q 004475 513 PCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGPSIPIIGEGDKLPND---RFVEQLVSSAEAAV 589 (751)
Q Consensus 513 P~vv~~HGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~v~~~~~~~~~g~g~~~~~~---~~~~~~~~d~~~~v 589 (751)
|++|+.+||-..+ -.| .+......++++|.+.+..+-++...+|...... .-.....+|+.+++
T Consensus 422 pTll~aYGGF~vs--------ltP-----~fs~~~~~WLerGg~~v~ANIRGGGEfGp~WH~Aa~k~nrq~vfdDf~AVa 488 (648)
T COG1505 422 PTLLYAYGGFNIS--------LTP-----RFSGSRKLWLERGGVFVLANIRGGGEFGPEWHQAGMKENKQNVFDDFIAVA 488 (648)
T ss_pred ceEEEeccccccc--------cCC-----ccchhhHHHHhcCCeEEEEecccCCccCHHHHHHHhhhcchhhhHHHHHHH
Confidence 9999999974222 111 1112237788898887775555554454432111 11234579999999
Q ss_pred HHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEccCCCCCCCCc-----cCcccccccch--hhHHHHHhc
Q 004475 590 EEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGSYNKTLTP-----FGFQTEFRTLW--EATNVYIEM 662 (751)
Q Consensus 590 ~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~~d~~~~~-----~~~~~~~~~~~--~~~~~~~~~ 662 (751)
+.|.+++...|+++++.|.|.||.++..++.+.|+.|.|+|+..|+.|+.... +.+..+++.+- +....+.++
T Consensus 489 edLi~rgitspe~lgi~GgSNGGLLvg~alTQrPelfgA~v~evPllDMlRYh~l~aG~sW~~EYG~Pd~P~d~~~l~~Y 568 (648)
T COG1505 489 EDLIKRGITSPEKLGIQGGSNGGLLVGAALTQRPELFGAAVCEVPLLDMLRYHLLTAGSSWIAEYGNPDDPEDRAFLLAY 568 (648)
T ss_pred HHHHHhCCCCHHHhhhccCCCCceEEEeeeccChhhhCceeeccchhhhhhhcccccchhhHhhcCCCCCHHHHHHHHhc
Confidence 99999998899999999999999999999999999999999999998854321 12233333332 234567889
Q ss_pred CcccccCC-CC-CCEEEEEcCCCCCCCCChHHHHHHHHHHHhCCCcEEEEEeCCCCCcCCccccH-HHHHHHHHHHHHHH
Q 004475 663 SPITHANK-IK-KPILIIHGEVDDKVGLFPMQAERFFDALKGHGALSRLVLLPFEHHVYAARENV-MHVIWETDRWLQKY 739 (751)
Q Consensus 663 ~~~~~~~~-~~-~P~li~~G~~D~~vp~~~~~~~~~~~~l~~~~~~~~~~~~~~~~H~~~~~~~~-~~~~~~~~~fl~~~ 739 (751)
||+++++. .+ +|+||..+.+|.+|. +.|++.|+.+|++.+.++-+.+-.++||.-...... ......+..||.+.
T Consensus 569 SPy~nl~~g~kYP~~LITTs~~DDRVH--PaHarKfaa~L~e~~~pv~~~e~t~gGH~g~~~~~~~A~~~a~~~afl~r~ 646 (648)
T COG1505 569 SPYHNLKPGQKYPPTLITTSLHDDRVH--PAHARKFAAKLQEVGAPVLLREETKGGHGGAAPTAEIARELADLLAFLLRT 646 (648)
T ss_pred CchhcCCccccCCCeEEEccccccccc--chHHHHHHHHHHhcCCceEEEeecCCcccCCCChHHHHHHHHHHHHHHHHh
Confidence 99998876 33 899999999999998 999999999999999999999999999987533322 34555678888877
Q ss_pred h
Q 004475 740 C 740 (751)
Q Consensus 740 l 740 (751)
|
T Consensus 647 L 647 (648)
T COG1505 647 L 647 (648)
T ss_pred h
Confidence 6
No 27
>KOG2237 consensus Predicted serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=99.87 E-value=1.6e-18 Score=176.96 Aligned_cols=291 Identities=20% Similarity=0.207 Sum_probs=204.1
Q ss_pred cCCCEEEEEEecCCCCCeEEEEEcCCCcee--EeecCCCCCCCc--cCCceEEEEEEcCCCceEEEEEEcCCCCCCCCCC
Q 004475 435 LNQLKILTSKESKTEITQYHILSWPLKKSS--QITNFPHPYPTL--ASLQKEMIKYQRKDGVPLTATLYLPPGYDQSKDG 510 (751)
Q Consensus 435 ~dg~~l~~~~~~~~~~~~l~~~~~~~g~~~--~lt~~~~~~~~~--~~~~~e~i~~~~~~~~~i~~~~~~P~~~~~~~~~ 510 (751)
.+++.+.|...++..|+.||.+|+..++.+ .+.+.....+.+ ..+.++++.+++.||..|+..++.-.... ..+
T Consensus 391 ~~~~~~~f~~sS~l~P~~iy~yDl~~~~~e~~vf~e~~~~lpg~~~s~y~~~r~~~~SkDGt~VPM~Iv~kk~~k--~dg 468 (712)
T KOG2237|consen 391 FKSSTIRFQFSSFLTPGSIYDYDLANGKPEPSVFREITVVLPGFDASDYVVERIEVSSKDGTKVPMFIVYKKDIK--LDG 468 (712)
T ss_pred CCCceEEEEEeccCCCCeEEEeeccCCCCCCcceeeeccccCcccccceEEEEEEEecCCCCccceEEEEechhh--hcC
Confidence 457889999999999999999999988432 233333323333 34589999999999999999999843322 234
Q ss_pred CccEEEEEcCCCCcCcccCCcccCCCCccCCCCchHHHHHHhCCeEEEEcCCCCCCCCCCCCCCchh---HHHHHHHHHH
Q 004475 511 PLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGPSIPIIGEGDKLPNDRF---VEQLVSSAEA 587 (751)
Q Consensus 511 ~~P~vv~~HGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~v~~~~~~~~~g~g~~~~~~~~---~~~~~~d~~~ 587 (751)
..|++|+.||+...+.+. .|. .....|..+|++....+-+++.++|........ -.....|++.
T Consensus 469 ~~P~LLygYGay~isl~p---------~f~----~srl~lld~G~Vla~a~VRGGGe~G~~WHk~G~lakKqN~f~Dfia 535 (712)
T KOG2237|consen 469 SKPLLLYGYGAYGISLDP---------SFR----ASRLSLLDRGWVLAYANVRGGGEYGEQWHKDGRLAKKQNSFDDFIA 535 (712)
T ss_pred CCceEEEEecccceeecc---------ccc----cceeEEEecceEEEEEeeccCcccccchhhccchhhhcccHHHHHH
Confidence 589999999974332221 111 123355679999988777777777766433222 2356899999
Q ss_pred HHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEccCCCCCCCCcc----Ccccccccchhh---HHHHH
Q 004475 588 AVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGSYNKTLTPF----GFQTEFRTLWEA---TNVYI 660 (751)
Q Consensus 588 ~v~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~~d~~~~~~----~~~~~~~~~~~~---~~~~~ 660 (751)
+++||.++++..+++..+.|.|.||.++..++.++|+.|.|+|+..|++|...... -........|.. .+.+.
T Consensus 536 ~AeyLve~gyt~~~kL~i~G~SaGGlLvga~iN~rPdLF~avia~VpfmDvL~t~~~tilplt~sd~ee~g~p~~~~~~~ 615 (712)
T KOG2237|consen 536 CAEYLVENGYTQPSKLAIEGGSAGGLLVGACINQRPDLFGAVIAKVPFMDVLNTHKDTILPLTTSDYEEWGNPEDFEDLI 615 (712)
T ss_pred HHHHHHHcCCCCccceeEecccCccchhHHHhccCchHhhhhhhcCcceehhhhhccCccccchhhhcccCChhhhhhhh
Confidence 99999999999999999999999999999999999999999999999988443210 011111122222 23444
Q ss_pred hcCcccccCCCC-----CCEEEEEcCCCCCCCCChHHHHHHHHHHHhCC-------CcEEEEEeCCCCCcCCcccc-HHH
Q 004475 661 EMSPITHANKIK-----KPILIIHGEVDDKVGLFPMQAERFFDALKGHG-------ALSRLVLLPFEHHVYAAREN-VMH 727 (751)
Q Consensus 661 ~~~~~~~~~~~~-----~P~li~~G~~D~~vp~~~~~~~~~~~~l~~~~-------~~~~~~~~~~~~H~~~~~~~-~~~ 727 (751)
.++++...++++ +.||+..+.+|.+|+ +.++..+.++|+.+- .++-+.+.+++||+.-.... .-+
T Consensus 616 ~i~~y~pv~~i~~q~~YPS~lvtta~hD~RV~--~~~~~K~vAklre~~~~~~~q~~pvll~i~~~agH~~~~~~~k~~~ 693 (712)
T KOG2237|consen 616 KISPYSPVDNIKKQVQYPSMLVTTADHDDRVG--PLESLKWVAKLREATCDSLKQTNPVLLRIETKAGHGAEKPRFKQIE 693 (712)
T ss_pred eecccCccCCCchhccCcceEEeeccCCCccc--ccchHHHHHHHHHHhhcchhcCCCEEEEEecCCccccCCchHHHHH
Confidence 555554444442 568999999999998 899999998887532 35788999999998743221 223
Q ss_pred HHHHHHHHHHHHhcC
Q 004475 728 VIWETDRWLQKYCLS 742 (751)
Q Consensus 728 ~~~~~~~fl~~~l~~ 742 (751)
......+||.+.+..
T Consensus 694 E~a~~yaFl~K~~~~ 708 (712)
T KOG2237|consen 694 EAAFRYAFLAKMLNS 708 (712)
T ss_pred HHHHHHHHHHHHhcC
Confidence 344567888777653
No 28
>KOG1455 consensus Lysophospholipase [Lipid transport and metabolism]
Probab=99.86 E-value=2.6e-20 Score=174.73 Aligned_cols=236 Identities=17% Similarity=0.185 Sum_probs=169.9
Q ss_pred CceEEEEEEcCCCceEEEEEEcCCCCCCCCCCCccEEEEEcCCCCcCcccCCcccCCCCccCCCCchHHHHHHhCCeEEE
Q 004475 479 LQKEMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVL 558 (751)
Q Consensus 479 ~~~e~i~~~~~~~~~i~~~~~~P~~~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~v~ 558 (751)
+......+.+.+|..+....|+|..- ..+..+|+++||.|. .....+...+..|+..||.|+
T Consensus 25 ~~~~~~~~~n~rG~~lft~~W~p~~~----~~pr~lv~~~HG~g~--------------~~s~~~~~~a~~l~~~g~~v~ 86 (313)
T KOG1455|consen 25 VTYSESFFTNPRGAKLFTQSWLPLSG----TEPRGLVFLCHGYGE--------------HSSWRYQSTAKRLAKSGFAVY 86 (313)
T ss_pred cceeeeeEEcCCCCEeEEEecccCCC----CCCceEEEEEcCCcc--------------cchhhHHHHHHHHHhCCCeEE
Confidence 34555667778899999999999652 235789999999741 111122346789999999999
Q ss_pred EcCCCCCCCCCCCCCCch---hHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEccCC
Q 004475 559 AGPSIPIIGEGDKLPNDR---FVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGS 635 (751)
Q Consensus 559 ~~~~~~~~g~g~~~~~~~---~~~~~~~d~~~~v~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~ 635 (751)
+ .++.|+|.+.+-.. .....++|+...++.++.+..-.....+++||||||.+++.++.++|+.+.++|+.+|.
T Consensus 87 a---~D~~GhG~SdGl~~yi~~~d~~v~D~~~~~~~i~~~~e~~~lp~FL~GeSMGGAV~Ll~~~k~p~~w~G~ilvaPm 163 (313)
T KOG1455|consen 87 A---IDYEGHGRSDGLHAYVPSFDLVVDDVISFFDSIKEREENKGLPRFLFGESMGGAVALLIALKDPNFWDGAILVAPM 163 (313)
T ss_pred E---eeccCCCcCCCCcccCCcHHHHHHHHHHHHHHHhhccccCCCCeeeeecCcchHHHHHHHhhCCcccccceeeecc
Confidence 9 67778888765433 35677899999999888776545568999999999999999999999999999999986
Q ss_pred CCCCCC-------------------ccC-cccc------cccchhhH-------------------HHHH-hcCcccccC
Q 004475 636 YNKTLT-------------------PFG-FQTE------FRTLWEAT-------------------NVYI-EMSPITHAN 669 (751)
Q Consensus 636 ~d~~~~-------------------~~~-~~~~------~~~~~~~~-------------------~~~~-~~~~~~~~~ 669 (751)
...... .|. .+.. ...++... +.++ ......++.
T Consensus 164 c~i~~~~kp~p~v~~~l~~l~~liP~wk~vp~~d~~~~~~kdp~~r~~~~~npl~y~g~pRl~T~~ElLr~~~~le~~l~ 243 (313)
T KOG1455|consen 164 CKISEDTKPHPPVISILTLLSKLIPTWKIVPTKDIIDVAFKDPEKRKILRSDPLCYTGKPRLKTAYELLRVTADLEKNLN 243 (313)
T ss_pred cccCCccCCCcHHHHHHHHHHHhCCceeecCCccccccccCCHHHHHHhhcCCceecCCccHHHHHHHHHHHHHHHHhcc
Confidence 431100 010 0000 01111100 0000 001234577
Q ss_pred CCCCCEEEEEcCCCCCCCCChHHHHHHHHHHHhCCCcEEEEEeCCCCCcCCc---cccHHHHHHHHHHHHHHH
Q 004475 670 KIKKPILIIHGEVDDKVGLFPMQAERFFDALKGHGALSRLVLLPFEHHVYAA---RENVMHVIWETDRWLQKY 739 (751)
Q Consensus 670 ~~~~P~li~~G~~D~~vp~~~~~~~~~~~~l~~~~~~~~~~~~~~~~H~~~~---~~~~~~~~~~~~~fl~~~ 739 (751)
++..|+|++||+.|.+.. +..++++|+..... +.++.+|||.-|.... .++.+.++..|++||+++
T Consensus 244 ~vtvPflilHG~dD~VTD--p~~Sk~Lye~A~S~--DKTlKlYpGm~H~Ll~gE~~en~e~Vf~DI~~Wl~~r 312 (313)
T KOG1455|consen 244 EVTVPFLILHGTDDKVTD--PKVSKELYEKASSS--DKTLKLYPGMWHSLLSGEPDENVEIVFGDIISWLDER 312 (313)
T ss_pred cccccEEEEecCCCcccC--cHHHHHHHHhccCC--CCceeccccHHHHhhcCCCchhHHHHHHHHHHHHHhc
Confidence 899999999999999988 99999999988765 5579999999999863 456778999999999875
No 29
>PLN02298 hydrolase, alpha/beta fold family protein
Probab=99.86 E-value=1.1e-19 Score=188.26 Aligned_cols=245 Identities=16% Similarity=0.210 Sum_probs=166.1
Q ss_pred ccCCceEEEEEEcCCCceEEEEEEcCCCCCCCCCCCccEEEEEcCCCCcCcccCCcccCCCCccCCCCchHHHHHHhCCe
Q 004475 476 LASLQKEMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRF 555 (751)
Q Consensus 476 ~~~~~~e~i~~~~~~~~~i~~~~~~P~~~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~ 555 (751)
+..+..+...+...+|..+.+..+.|.+. ..+.|+||++||.+. . ..+ ........|+++||
T Consensus 27 ~~~~~~~~~~~~~~dg~~l~~~~~~~~~~----~~~~~~VvllHG~~~-----------~-~~~--~~~~~~~~L~~~Gy 88 (330)
T PLN02298 27 LKGIKGSKSFFTSPRGLSLFTRSWLPSSS----SPPRALIFMVHGYGN-----------D-ISW--TFQSTAIFLAQMGF 88 (330)
T ss_pred ccCCccccceEEcCCCCEEEEEEEecCCC----CCCceEEEEEcCCCC-----------C-cce--ehhHHHHHHHhCCC
Confidence 33455666677778999999999988642 124689999999531 0 011 11123456788999
Q ss_pred EEEEcCCCCCCCCCCCCCCc---hhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEc
Q 004475 556 AVLAGPSIPIIGEGDKLPND---RFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIAR 632 (751)
Q Consensus 556 ~v~~~~~~~~~g~g~~~~~~---~~~~~~~~d~~~~v~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~ 632 (751)
.|++ ++.+|+|.+.... .......+|+..+++++......+..+++|+||||||.+|+.++.++|++++++|+.
T Consensus 89 ~V~~---~D~rGhG~S~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~~~~~i~l~GhSmGG~ia~~~a~~~p~~v~~lvl~ 165 (330)
T PLN02298 89 ACFA---LDLEGHGRSEGLRAYVPNVDLVVEDCLSFFNSVKQREEFQGLPRFLYGESMGGAICLLIHLANPEGFDGAVLV 165 (330)
T ss_pred EEEE---ecCCCCCCCCCccccCCCHHHHHHHHHHHHHHHHhcccCCCCCEEEEEecchhHHHHHHHhcCcccceeEEEe
Confidence 9999 6677888764322 235677899999999998764445568999999999999999999999999999999
Q ss_pred cCCCCCCCC---ccC-----------ccc----ccccch------hhHHHHHhcC----------------------ccc
Q 004475 633 SGSYNKTLT---PFG-----------FQT----EFRTLW------EATNVYIEMS----------------------PIT 666 (751)
Q Consensus 633 ~~~~d~~~~---~~~-----------~~~----~~~~~~------~~~~~~~~~~----------------------~~~ 666 (751)
+|....... .+. .+. ...... .....+...+ ...
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (330)
T PLN02298 166 APMCKISDKIRPPWPIPQILTFVARFLPTLAIVPTADLLEKSVKVPAKKIIAKRNPMRYNGKPRLGTVVELLRVTDYLGK 245 (330)
T ss_pred cccccCCcccCCchHHHHHHHHHHHHCCCCccccCCCcccccccCHHHHHHHHhCccccCCCccHHHHHHHHHHHHHHHH
Confidence 886432110 000 000 000000 0000000000 112
Q ss_pred ccCCCCCCEEEEEcCCCCCCCCChHHHHHHHHHHHhCCCcEEEEEeCCCCCcCCccc---cHHHHHHHHHHHHHHHhcCC
Q 004475 667 HANKIKKPILIIHGEVDDKVGLFPMQAERFFDALKGHGALSRLVLLPFEHHVYAARE---NVMHVIWETDRWLQKYCLSN 743 (751)
Q Consensus 667 ~~~~~~~P~li~~G~~D~~vp~~~~~~~~~~~~l~~~~~~~~~~~~~~~~H~~~~~~---~~~~~~~~~~~fl~~~l~~~ 743 (751)
.+.++++|+|++||++|.++| +..++.+++.+... ..+++++++++|.....+ ..+.+.+.+.+||.+++...
T Consensus 246 ~l~~i~~PvLii~G~~D~ivp--~~~~~~l~~~i~~~--~~~l~~~~~a~H~~~~e~pd~~~~~~~~~i~~fl~~~~~~~ 321 (330)
T PLN02298 246 KLKDVSIPFIVLHGSADVVTD--PDVSRALYEEAKSE--DKTIKIYDGMMHSLLFGEPDENIEIVRRDILSWLNERCTGK 321 (330)
T ss_pred hhhhcCCCEEEEecCCCCCCC--HHHHHHHHHHhccC--CceEEEcCCcEeeeecCCCHHHHHHHHHHHHHHHHHhccCC
Confidence 356788999999999999999 89999998887643 458999999999976322 13567888999999998654
Q ss_pred CC
Q 004475 744 TS 745 (751)
Q Consensus 744 ~~ 745 (751)
.+
T Consensus 322 ~~ 323 (330)
T PLN02298 322 AT 323 (330)
T ss_pred CC
Confidence 43
No 30
>PRK10566 esterase; Provisional
Probab=99.85 E-value=9.4e-20 Score=181.06 Aligned_cols=220 Identities=19% Similarity=0.249 Sum_probs=144.2
Q ss_pred eEEEEEEcCCCCCCCCCCCccEEEEEcCCCCcCcccCCcccCCCCccCCCCchHHHHHHhCCeEEEEcCCCCCCCCCCCC
Q 004475 493 PLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGPSIPIIGEGDKL 572 (751)
Q Consensus 493 ~i~~~~~~P~~~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~v~~~~~~~~~g~g~~~ 572 (751)
.+..+.+.|.+. .+++.|+||++||.+. ... .....+..|+++||+|+++++ +|+|.+.
T Consensus 11 ~~~~~~~~p~~~---~~~~~p~vv~~HG~~~-----------~~~----~~~~~~~~l~~~G~~v~~~d~---~g~G~~~ 69 (249)
T PRK10566 11 GIEVLHAFPAGQ---RDTPLPTVFFYHGFTS-----------SKL----VYSYFAVALAQAGFRVIMPDA---PMHGARF 69 (249)
T ss_pred CcceEEEcCCCC---CCCCCCEEEEeCCCCc-----------ccc----hHHHHHHHHHhCCCEEEEecC---CcccccC
Confidence 356677778641 1235799999999641 101 122456788899999999544 4555431
Q ss_pred CCc------h---hHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEcc-CCCCCC---
Q 004475 573 PND------R---FVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARS-GSYNKT--- 639 (751)
Q Consensus 573 ~~~------~---~~~~~~~d~~~~v~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~-~~~d~~--- 639 (751)
... . ......+|+..++++++++..+|+++|+++|||+||.+|+.++.++|+...+++... +.+...
T Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~v~G~S~Gg~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (249)
T PRK10566 70 SGDEARRLNHFWQILLQNMQEFPTLRAAIREEGWLLDDRLAVGGASMGGMTALGIMARHPWVKCVASLMGSGYFTSLART 149 (249)
T ss_pred CCccccchhhHHHHHHHHHHHHHHHHHHHHhcCCcCccceeEEeecccHHHHHHHHHhCCCeeEEEEeeCcHHHHHHHHH
Confidence 110 1 112346778888999988877899999999999999999999999876433333322 211100
Q ss_pred CCccCccccc---ccchhhHHHHHhcCcccccCCC-CCCEEEEEcCCCCCCCCChHHHHHHHHHHHhCCC--cEEEEEeC
Q 004475 640 LTPFGFQTEF---RTLWEATNVYIEMSPITHANKI-KKPILIIHGEVDDKVGLFPMQAERFFDALKGHGA--LSRLVLLP 713 (751)
Q Consensus 640 ~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~-~~P~li~~G~~D~~vp~~~~~~~~~~~~l~~~~~--~~~~~~~~ 713 (751)
..+....... .........+...++...+.++ ++|+|++||++|..+| +.++++++++++.++. ++++.+++
T Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~P~Lii~G~~D~~v~--~~~~~~l~~~l~~~g~~~~~~~~~~~ 227 (249)
T PRK10566 150 LFPPLIPETAAQQAEFNNIVAPLAEWEVTHQLEQLADRPLLLWHGLADDVVP--AAESLRLQQALRERGLDKNLTCLWEP 227 (249)
T ss_pred hcccccccccccHHHHHHHHHHHhhcChhhhhhhcCCCCEEEEEcCCCCcCC--HHHHHHHHHHHHhcCCCcceEEEecC
Confidence 0000000000 0000111122333444455666 6999999999999999 9999999999998876 47899999
Q ss_pred CCCCcCCccccHHHHHHHHHHHHHHHh
Q 004475 714 FEHHVYAARENVMHVIWETDRWLQKYC 740 (751)
Q Consensus 714 ~~~H~~~~~~~~~~~~~~~~~fl~~~l 740 (751)
+++|.+. ...+..+++||++++
T Consensus 228 ~~~H~~~-----~~~~~~~~~fl~~~~ 249 (249)
T PRK10566 228 GVRHRIT-----PEALDAGVAFFRQHL 249 (249)
T ss_pred CCCCccC-----HHHHHHHHHHHHhhC
Confidence 9999874 257889999999764
No 31
>PRK13604 luxD acyl transferase; Provisional
Probab=99.85 E-value=9.5e-20 Score=177.29 Aligned_cols=208 Identities=13% Similarity=0.045 Sum_probs=142.5
Q ss_pred EEEEEcCCCceEEEEEEcCCCCCCCCCCCccEEEEEcCCCCcCcccCCcccCCCCccCCCCchHHHHHHhCCeEEEEcCC
Q 004475 483 MIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGPS 562 (751)
Q Consensus 483 ~i~~~~~~~~~i~~~~~~P~~~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~v~~~~~ 562 (751)
...+...+|..+.||+..|.+.. ..+.++||++||-+ +. . ..+..++.+|+++||+|+.
T Consensus 11 ~~~~~~~dG~~L~Gwl~~P~~~~---~~~~~~vIi~HGf~-----------~~-~---~~~~~~A~~La~~G~~vLr--- 69 (307)
T PRK13604 11 DHVICLENGQSIRVWETLPKENS---PKKNNTILIASGFA-----------RR-M---DHFAGLAEYLSSNGFHVIR--- 69 (307)
T ss_pred hheEEcCCCCEEEEEEEcCcccC---CCCCCEEEEeCCCC-----------CC-h---HHHHHHHHHHHHCCCEEEE---
Confidence 34456678999999999997522 23478999999953 11 1 1134667789999999999
Q ss_pred CCCCCC-CCCCCCc--hhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEccCCCCCC
Q 004475 563 IPIIGE-GDKLPND--RFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGSYNKT 639 (751)
Q Consensus 563 ~~~~g~-g~~~~~~--~~~~~~~~d~~~~v~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~~d~~ 639 (751)
+|.+|. |.+.+.. ........|+..+++|++++. ..+|+|+||||||.+|+.+|... .++++|+.+|+.+..
T Consensus 70 fD~rg~~GeS~G~~~~~t~s~g~~Dl~aaid~lk~~~---~~~I~LiG~SmGgava~~~A~~~--~v~~lI~~sp~~~l~ 144 (307)
T PRK13604 70 YDSLHHVGLSSGTIDEFTMSIGKNSLLTVVDWLNTRG---INNLGLIAASLSARIAYEVINEI--DLSFLITAVGVVNLR 144 (307)
T ss_pred ecCCCCCCCCCCccccCcccccHHHHHHHHHHHHhcC---CCceEEEEECHHHHHHHHHhcCC--CCCEEEEcCCcccHH
Confidence 554444 4443211 112334799999999998863 46899999999999997666644 389999999987722
Q ss_pred C------C------ccC-ccccc----ccch--hhHHH------HHhcCcccccCCCCCCEEEEEcCCCCCCCCChHHHH
Q 004475 640 L------T------PFG-FQTEF----RTLW--EATNV------YIEMSPITHANKIKKPILIIHGEVDDKVGLFPMQAE 694 (751)
Q Consensus 640 ~------~------~~~-~~~~~----~~~~--~~~~~------~~~~~~~~~~~~~~~P~li~~G~~D~~vp~~~~~~~ 694 (751)
. . ++. .+... .... ...+. ....+++..+.+++.|+|++||+.|..|| +.+++
T Consensus 145 d~l~~~~~~~~~~~p~~~lp~~~d~~g~~l~~~~f~~~~~~~~~~~~~s~i~~~~~l~~PvLiIHG~~D~lVp--~~~s~ 222 (307)
T PRK13604 145 DTLERALGYDYLSLPIDELPEDLDFEGHNLGSEVFVTDCFKHGWDTLDSTINKMKGLDIPFIAFTANNDSWVK--QSEVI 222 (307)
T ss_pred HHHHHhhhcccccCcccccccccccccccccHHHHHHHHHhcCccccccHHHHHhhcCCCEEEEEcCCCCccC--HHHHH
Confidence 0 0 000 00000 0000 00011 11234456677889999999999999999 99999
Q ss_pred HHHHHHHhCCCcEEEEEeCCCCCcCC
Q 004475 695 RFFDALKGHGALSRLVLLPFEHHVYA 720 (751)
Q Consensus 695 ~~~~~l~~~~~~~~~~~~~~~~H~~~ 720 (751)
+++++++. .+++++++||+.|.+.
T Consensus 223 ~l~e~~~s--~~kkl~~i~Ga~H~l~ 246 (307)
T PRK13604 223 DLLDSIRS--EQCKLYSLIGSSHDLG 246 (307)
T ss_pred HHHHHhcc--CCcEEEEeCCCccccC
Confidence 99998754 3678999999999985
No 32
>PRK05077 frsA fermentation/respiration switch protein; Reviewed
Probab=99.85 E-value=1.4e-19 Score=190.06 Aligned_cols=230 Identities=19% Similarity=0.163 Sum_probs=154.3
Q ss_pred CCceEEEEEEcCCCceEEEEEEcCCCCCCCCCCCccEEEEEcCCCCcCcccCCcccCCCCccCCCCchHHHHHHhCCeEE
Q 004475 478 SLQKEMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAV 557 (751)
Q Consensus 478 ~~~~e~i~~~~~~~~~i~~~~~~P~~~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~v 557 (751)
....+.+.++..++..+.+++++|.. .+++|+||++||.+ + ............|+++||+|
T Consensus 165 ~~~~e~v~i~~~~g~~l~g~l~~P~~-----~~~~P~Vli~gG~~------------~--~~~~~~~~~~~~La~~Gy~v 225 (414)
T PRK05077 165 PGELKELEFPIPGGGPITGFLHLPKG-----DGPFPTVLVCGGLD------------S--LQTDYYRLFRDYLAPRGIAM 225 (414)
T ss_pred CCceEEEEEEcCCCcEEEEEEEECCC-----CCCccEEEEeCCcc------------c--chhhhHHHHHHHHHhCCCEE
Confidence 35688999998787789999999973 23589988776632 0 00011113455788999999
Q ss_pred EEcCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEccCCCC
Q 004475 558 LAGPSIPIIGEGDKLPNDRFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGSYN 637 (751)
Q Consensus 558 ~~~~~~~~~g~g~~~~~~~~~~~~~~d~~~~v~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~~d 637 (751)
++ ++.+|+|.+.... ...+.......+++++.+.+.+|.+||+++|||+||++|+.+|..+|++++++|+.+|.++
T Consensus 226 l~---~D~pG~G~s~~~~-~~~d~~~~~~avld~l~~~~~vd~~ri~l~G~S~GG~~Al~~A~~~p~ri~a~V~~~~~~~ 301 (414)
T PRK05077 226 LT---IDMPSVGFSSKWK-LTQDSSLLHQAVLNALPNVPWVDHTRVAAFGFRFGANVAVRLAYLEPPRLKAVACLGPVVH 301 (414)
T ss_pred EE---ECCCCCCCCCCCC-ccccHHHHHHHHHHHHHhCcccCcccEEEEEEChHHHHHHHHHHhCCcCceEEEEECCccc
Confidence 99 5556776653321 1112223335788999999889999999999999999999999999899999999998765
Q ss_pred CCCCccCcccc------------cccchhhHH----HHHhcCcc--cc-cCCCCCCEEEEEcCCCCCCCCChHHHHHHHH
Q 004475 638 KTLTPFGFQTE------------FRTLWEATN----VYIEMSPI--TH-ANKIKKPILIIHGEVDDKVGLFPMQAERFFD 698 (751)
Q Consensus 638 ~~~~~~~~~~~------------~~~~~~~~~----~~~~~~~~--~~-~~~~~~P~li~~G~~D~~vp~~~~~~~~~~~ 698 (751)
........... ........+ .+...+.. .. ..++++|+|++||++|.++| +..++.+.+
T Consensus 302 ~~~~~~~~~~~~p~~~~~~la~~lg~~~~~~~~l~~~l~~~sl~~~~~l~~~i~~PvLiI~G~~D~ivP--~~~a~~l~~ 379 (414)
T PRK05077 302 TLLTDPKRQQQVPEMYLDVLASRLGMHDASDEALRVELNRYSLKVQGLLGRRCPTPMLSGYWKNDPFSP--EEDSRLIAS 379 (414)
T ss_pred hhhcchhhhhhchHHHHHHHHHHhCCCCCChHHHHHHhhhccchhhhhhccCCCCcEEEEecCCCCCCC--HHHHHHHHH
Confidence 22111000000 000000111 11111110 01 24688999999999999999 888876654
Q ss_pred HHHhCCCcEEEEEeCCCCCcCCccccHHHHHHHHHHHHHHHh
Q 004475 699 ALKGHGALSRLVLLPFEHHVYAARENVMHVIWETDRWLQKYC 740 (751)
Q Consensus 699 ~l~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~fl~~~l 740 (751)
.. ...+++++|++ |. .+....++..+.+||.++|
T Consensus 380 ~~----~~~~l~~i~~~-~~---~e~~~~~~~~i~~wL~~~l 413 (414)
T PRK05077 380 SS----ADGKLLEIPFK-PV---YRNFDKALQEISDWLEDRL 413 (414)
T ss_pred hC----CCCeEEEccCC-Cc---cCCHHHHHHHHHHHHHHHh
Confidence 44 34578999986 33 3457789999999999876
No 33
>PLN02385 hydrolase; alpha/beta fold family protein
Probab=99.84 E-value=2.4e-19 Score=186.90 Aligned_cols=237 Identities=14% Similarity=0.137 Sum_probs=159.5
Q ss_pred CceEEEEEEcCCCceEEEEEEcCCCCCCCCCCCccEEEEEcCCCCcCcccCCcccCCCCccCCCCchHHHHHHhCCeEEE
Q 004475 479 LQKEMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVL 558 (751)
Q Consensus 479 ~~~e~i~~~~~~~~~i~~~~~~P~~~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~v~ 558 (751)
+..++..+.+.+|.++.+..+.|.+ ..+.|+||++||.+. ....+.......|+++||.|+
T Consensus 59 ~~~~~~~~~~~~g~~l~~~~~~p~~-----~~~~~~iv~lHG~~~--------------~~~~~~~~~~~~l~~~g~~v~ 119 (349)
T PLN02385 59 IKTEESYEVNSRGVEIFSKSWLPEN-----SRPKAAVCFCHGYGD--------------TCTFFFEGIARKIASSGYGVF 119 (349)
T ss_pred cceeeeeEEcCCCCEEEEEEEecCC-----CCCCeEEEEECCCCC--------------ccchHHHHHHHHHHhCCCEEE
Confidence 3344445556788999999999864 224689999999631 001111134557778899999
Q ss_pred EcCCCCCCCCCCCCCCc---hhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEccCC
Q 004475 559 AGPSIPIIGEGDKLPND---RFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGS 635 (751)
Q Consensus 559 ~~~~~~~~g~g~~~~~~---~~~~~~~~d~~~~v~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~ 635 (751)
+ ++.+|+|.+.... ......++|+.+.++.+......+..+++|+||||||.+|+.++.++|++++++|+++|.
T Consensus 120 ~---~D~~G~G~S~~~~~~~~~~~~~~~dv~~~l~~l~~~~~~~~~~~~LvGhSmGG~val~~a~~~p~~v~glVLi~p~ 196 (349)
T PLN02385 120 A---MDYPGFGLSEGLHGYIPSFDDLVDDVIEHYSKIKGNPEFRGLPSFLFGQSMGGAVALKVHLKQPNAWDGAILVAPM 196 (349)
T ss_pred E---ecCCCCCCCCCCCCCcCCHHHHHHHHHHHHHHHHhccccCCCCEEEEEeccchHHHHHHHHhCcchhhheeEeccc
Confidence 9 6667888765432 234677888888888887654445568999999999999999999999999999999885
Q ss_pred CCCCCC--c-c-----------------Cccccc--ccchhhH-----------------------HHHHh-cCcccccC
Q 004475 636 YNKTLT--P-F-----------------GFQTEF--RTLWEAT-----------------------NVYIE-MSPITHAN 669 (751)
Q Consensus 636 ~d~~~~--~-~-----------------~~~~~~--~~~~~~~-----------------------~~~~~-~~~~~~~~ 669 (751)
...... . . ...... ...+... +.+.. ......+.
T Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~ 276 (349)
T PLN02385 197 CKIADDVVPPPLVLQILILLANLLPKAKLVPQKDLAELAFRDLKKRKMAEYNVIAYKDKPRLRTAVELLRTTQEIEMQLE 276 (349)
T ss_pred ccccccccCchHHHHHHHHHHHHCCCceecCCCccccccccCHHHHHHhhcCcceeCCCcchHHHHHHHHHHHHHHHhcc
Confidence 431100 0 0 000000 0000000 00000 01122456
Q ss_pred CCCCCEEEEEcCCCCCCCCChHHHHHHHHHHHhCCCcEEEEEeCCCCCcCCcccc---HHHHHHHHHHHHHHHhc
Q 004475 670 KIKKPILIIHGEVDDKVGLFPMQAERFFDALKGHGALSRLVLLPFEHHVYAAREN---VMHVIWETDRWLQKYCL 741 (751)
Q Consensus 670 ~~~~P~li~~G~~D~~vp~~~~~~~~~~~~l~~~~~~~~~~~~~~~~H~~~~~~~---~~~~~~~~~~fl~~~l~ 741 (751)
++++|+|++||++|.++| +..++.+++.+... ..+++++|+++|.....+. ...++..+++||++++.
T Consensus 277 ~i~~P~Lii~G~~D~vv~--~~~~~~l~~~~~~~--~~~l~~i~~~gH~l~~e~p~~~~~~v~~~i~~wL~~~~~ 347 (349)
T PLN02385 277 EVSLPLLILHGEADKVTD--PSVSKFLYEKASSS--DKKLKLYEDAYHSILEGEPDEMIFQVLDDIISWLDSHST 347 (349)
T ss_pred cCCCCEEEEEeCCCCccC--hHHHHHHHHHcCCC--CceEEEeCCCeeecccCCChhhHHHHHHHHHHHHHHhcc
Confidence 789999999999999998 88888888777532 4589999999999763322 34588899999998864
No 34
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=99.83 E-value=6.6e-19 Score=182.80 Aligned_cols=297 Identities=19% Similarity=0.232 Sum_probs=192.5
Q ss_pred CCcceeEEeecCCCCCCCCcccccCCCCcccccceeecCCCCeEEEEEeecccccccCCceeEEEEEcCCCCeeeccCCC
Q 004475 2 PFFTGIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESP 81 (751)
Q Consensus 2 ~~~~~~~~~~~~~~~~~g~~~~l~~~~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~~~~~l~i~~~~~g~~~~lt~~~ 81 (751)
++...+|++|+.+ ++.++|+.. ......|.|||||++|||+.. .+||+.++.+++.++||..+
T Consensus 20 s~~~~y~i~d~~~----~~~~~l~~~--~~~~~~~~~sP~g~~~~~v~~-----------~nly~~~~~~~~~~~lT~dg 82 (353)
T PF00930_consen 20 SFKGDYYIYDIET----GEITPLTPP--PPKLQDAKWSPDGKYIAFVRD-----------NNLYLRDLATGQETQLTTDG 82 (353)
T ss_dssp EEEEEEEEEETTT----TEEEESS-E--ETTBSEEEE-SSSTEEEEEET-----------TEEEEESSTTSEEEESES--
T ss_pred ccceeEEEEecCC----CceEECcCC--ccccccceeecCCCeeEEEec-----------CceEEEECCCCCeEEecccc
Confidence 5678999999999 999999732 346899999999999999853 79999999999999999876
Q ss_pred Ccc-ccc------------eeeeeEEecCCcEEEEeecCCCCCCCCC-C--CCC--CCCceeeccccccccchhhhhccC
Q 004475 82 DIC-LNA------------VFGSFVWVNNSTLLIFTIPSSRRDPPKK-T--MVP--LGPKIQSNEQKNIIISRMTDNLLK 143 (751)
Q Consensus 82 ~~~-~~~------------~~~~~~wspDg~~l~~~~~~~~~~~~~~-~--~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 143 (751)
... .++ ....+.|||||++|+|...+.+....-. . ..+ ..|......-++.+.
T Consensus 83 ~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~d~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G~--------- 153 (353)
T PF00930_consen 83 EPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRFDEREVPEYPLPDYSPPDSQYPEVESIRYPKAGD--------- 153 (353)
T ss_dssp TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEEE-TTS-EEEEEEESSSTESS-EEEEEE--BTTS---------
T ss_pred ceeEEcCccceeccccccccccceEECCCCCEEEEEEECCcCCceEEeeccCCccccCCcccccccCCCCC---------
Confidence 321 111 1236789999999999977655432000 0 000 011111111111100
Q ss_pred CccchhhhhhheeeEEEEEcC-CCCceecC------CC-ceEEeeeeCCCCceEEEEEecCCcccccccCCCceeEEEEe
Q 004475 144 DEYDESLFDYYTTAQLVLGSL-DGTAKDFG------TP-AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWT 215 (751)
Q Consensus 144 ~~~~~~~~~~~~~~~l~~~~~-~G~~~~lt------~~-~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~l~~~d 215 (751)
. .....|+++++ +|+...+. .. ..+..+.|++|++.|++....+... ...+.++|
T Consensus 154 ----~-----np~v~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~d~~~l~~~~~nR~q~--------~~~l~~~d 216 (353)
T PF00930_consen 154 ----P-----NPRVSLFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSPDGKRLWVQWLNRDQN--------RLDLVLCD 216 (353)
T ss_dssp ------------EEEEEEEESSSTCCCEE---HHHHTSSEEEEEEEEEETTEEEEEEEEETTST--------EEEEEEEE
T ss_pred ----c-----CCceEEEEEECCCCcEEEeeeccccCCCccCcccceecCCCcEEEEEEcccCCC--------EEEEEEEE
Confidence 0 03368999999 55543332 12 5667999999999888877765422 35688899
Q ss_pred CCCceeeeeccCCCCCCCCCccCCccCCCceeeee-cCCCceEEEEEeccCCCCccccCcccceeeccCCCCCCCCceEe
Q 004475 216 TDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWR-ADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEIL 294 (751)
Q Consensus 216 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s-pdG~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l 294 (751)
..++..+.+.... ...++.. ...+.|. +++.. +++++..+ .-.+||+++.+ ++..+.|
T Consensus 217 ~~tg~~~~~~~e~----~~~Wv~~----~~~~~~~~~~~~~-~l~~s~~~---------G~~hly~~~~~---~~~~~~l 275 (353)
T PF00930_consen 217 ASTGETRVVLEET----SDGWVDV----YDPPHFLGPDGNE-FLWISERD---------GYRHLYLYDLD---GGKPRQL 275 (353)
T ss_dssp ECTTTCEEEEEEE----SSSSSSS----SSEEEE-TTTSSE-EEEEEETT---------SSEEEEEEETT---SSEEEES
T ss_pred CCCCceeEEEEec----CCcceee----ecccccccCCCCE-EEEEEEcC---------CCcEEEEEccc---ccceecc
Confidence 9876655443211 1111111 1245665 99998 66655332 23589999997 6678899
Q ss_pred EeeceeEE--EEEecCCceEEEeeeec-ccceeEEEecCC-CCCCcceeeeecccccccCCCCCCCeeeCCCCCEEEEee
Q 004475 295 HKLDLRFS--VSWCDDSLALVNETWYK-TSQTRTWLVCPG-SKDVAPRVLFDRVFENVYSDPGSPMMTRTSTGTNVIAKI 370 (751)
Q Consensus 295 ~~~~~~~~--~~~spdg~~l~~~~~~~-~~~~~l~~~~~~-~~~~~~~~l~~~~~~~~~~~~~~~~~~~spDG~~l~~~~ 370 (751)
+.++..+. ..|+++++.|+|.++.. ....+||.++++ + +.++.|+...... .. +++||||++++...
T Consensus 276 T~G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~~~--~~~~~LT~~~~~~-~~------~~~Spdg~y~v~~~ 346 (353)
T PF00930_consen 276 TSGDWEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSLDSG--GEPKCLTCEDGDH-YS------ASFSPDGKYYVDTY 346 (353)
T ss_dssp S-SSS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETTET--TEEEESSTTSSTT-EE------EEE-TTSSEEEEEE
T ss_pred ccCceeecccceEcCCCCEEEEEecCCCCCceEEEEEEeCCC--CCeEeccCCCCCc-eE------EEECCCCCEEEEEE
Confidence 99988885 89999999999998653 467899999999 6 5778888655433 11 78999999998877
Q ss_pred e
Q 004475 371 K 371 (751)
Q Consensus 371 ~ 371 (751)
.
T Consensus 347 s 347 (353)
T PF00930_consen 347 S 347 (353)
T ss_dssp E
T ss_pred c
Confidence 3
No 35
>PF01738 DLH: Dienelactone hydrolase family; InterPro: IPR002925 Dienelactone hydrolases play a crucial role in chlorocatechol degradation via the modified ortho cleavage pathway. Enzymes induced in 4-fluorobenzoate-utilizing bacteria have been classified into three groups on the basis of their specificity towards cis- and trans-dienelactone []. Some proteins contain repeated small fragments of this domain (for example rat kan-1 protein).; GO: 0016787 hydrolase activity; PDB: 1GGV_A 1ZIY_A 1ZI6_A 1ZIC_A 1ZJ5_A 1ZI8_A 1ZJ4_A 1ZI9_A 1ZIX_A 3F67_A.
Probab=99.83 E-value=5.4e-20 Score=178.01 Aligned_cols=201 Identities=23% Similarity=0.257 Sum_probs=140.5
Q ss_pred EEEEEEcCCCCCCCCCCCccEEEEEcCCCCcCcccCCcccCCCCccCCCCchHHHHHHhCCeEEEEcCCCCCCC-CCCCC
Q 004475 494 LTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGPSIPIIG-EGDKL 572 (751)
Q Consensus 494 i~~~~~~P~~~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~v~~~~~~~~~g-~g~~~ 572 (751)
+.+++..|++ .++.|.||++|+-. ++.......+..|+++||.|+++|.+...+ .....
T Consensus 1 ~~ay~~~P~~-----~~~~~~Vvv~~d~~---------------G~~~~~~~~ad~lA~~Gy~v~~pD~f~~~~~~~~~~ 60 (218)
T PF01738_consen 1 IDAYVARPEG-----GGPRPAVVVIHDIF---------------GLNPNIRDLADRLAEEGYVVLAPDLFGGRGAPPSDP 60 (218)
T ss_dssp EEEEEEEETT-----SSSEEEEEEE-BTT---------------BS-HHHHHHHHHHHHTT-EEEEE-CCCCTS--CCCH
T ss_pred CeEEEEeCCC-----CCCCCEEEEEcCCC---------------CCchHHHHHHHHHHhcCCCEEecccccCCCCCccch
Confidence 5789999987 24689999999841 121222245778999999999988765554 11110
Q ss_pred CC-chh--------HHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEccCCCCCCCCcc
Q 004475 573 PN-DRF--------VEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGSYNKTLTPF 643 (751)
Q Consensus 573 ~~-~~~--------~~~~~~d~~~~v~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~~d~~~~~~ 643 (751)
.. ... .+...+|+..++++|++++.++..||+++|+|+||.+|+.++... ..++++|++.|... .
T Consensus 61 ~~~~~~~~~~~~~~~~~~~~~~~aa~~~l~~~~~~~~~kig~vGfc~GG~~a~~~a~~~-~~~~a~v~~yg~~~----~- 134 (218)
T PF01738_consen 61 EEAFAAMRELFAPRPEQVAADLQAAVDYLRAQPEVDPGKIGVVGFCWGGKLALLLAARD-PRVDAAVSFYGGSP----P- 134 (218)
T ss_dssp HCHHHHHHHCHHHSHHHHHHHHHHHHHHHHCTTTCEEEEEEEEEETHHHHHHHHHHCCT-TTSSEEEEES-SSS----G-
T ss_pred hhHHHHHHHHHhhhHHHHHHHHHHHHHHHHhccccCCCcEEEEEEecchHHhhhhhhhc-cccceEEEEcCCCC----C-
Confidence 00 001 234568888999999999878889999999999999999999887 67999999998100 0
Q ss_pred CcccccccchhhHHHHHhcCcccccCCCCCCEEEEEcCCCCCCCCChHHHHHHHHHHHhCCCcEEEEEeCCCCCcCCccc
Q 004475 644 GFQTEFRTLWEATNVYIEMSPITHANKIKKPILIIHGEVDDKVGLFPMQAERFFDALKGHGALSRLVLLPFEHHVYAARE 723 (751)
Q Consensus 644 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~li~~G~~D~~vp~~~~~~~~~~~~l~~~~~~~~~~~~~~~~H~~~~~~ 723 (751)
..+.....++++|+|+++|+.|+.+| .+...++.+.|++++.++++++||+++|+|....
T Consensus 135 ------------------~~~~~~~~~~~~P~l~~~g~~D~~~~--~~~~~~~~~~l~~~~~~~~~~~y~ga~HgF~~~~ 194 (218)
T PF01738_consen 135 ------------------PPPLEDAPKIKAPVLILFGENDPFFP--PEEVEALEEALKAAGVDVEVHVYPGAGHGFANPS 194 (218)
T ss_dssp ------------------GGHHHHGGG--S-EEEEEETT-TTS---HHHHHHHHHHHHCTTTTEEEEEETT--TTTTSTT
T ss_pred ------------------CcchhhhcccCCCEeecCccCCCCCC--hHHHHHHHHHHHhcCCcEEEEECCCCcccccCCC
Confidence 01112345678999999999999998 8889999999999999999999999999997643
Q ss_pred c-------HHHHHHHHHHHHHHHh
Q 004475 724 N-------VMHVIWETDRWLQKYC 740 (751)
Q Consensus 724 ~-------~~~~~~~~~~fl~~~l 740 (751)
. ..+.++++++||+++|
T Consensus 195 ~~~~~~~aa~~a~~~~~~ff~~~L 218 (218)
T PF01738_consen 195 RPPYDPAAAEDAWQRTLAFFKRHL 218 (218)
T ss_dssp STT--HHHHHHHHHHHHHHHCC--
T ss_pred CcccCHHHHHHHHHHHHHHHHhcC
Confidence 2 3567888999998875
No 36
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=99.83 E-value=7.9e-19 Score=182.21 Aligned_cols=302 Identities=17% Similarity=0.150 Sum_probs=197.0
Q ss_pred cCCCCeEEEEEeecccccccCCceeEEEEEcCCCCeeeccCCCCccccceeeeeEEecCCcEEEEeecCCCCCCCCCCCC
Q 004475 39 SPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMV 118 (751)
Q Consensus 39 SPDG~~iaf~~~~~~~~~~~~~~~~l~i~~~~~g~~~~lt~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~ 118 (751)
||||++++|..+..+.-+. +....+|++++++++.++|+.... ....+.|||||+.|+|...
T Consensus 1 S~d~~~~l~~~~~~~~~r~-s~~~~y~i~d~~~~~~~~l~~~~~-----~~~~~~~sP~g~~~~~v~~------------ 62 (353)
T PF00930_consen 1 SPDGKFVLFATNYTKQWRH-SFKGDYYIYDIETGEITPLTPPPP-----KLQDAKWSPDGKYIAFVRD------------ 62 (353)
T ss_dssp -TTSSEEEEEEEEEEESSS-EEEEEEEEEETTTTEEEESS-EET-----TBSEEEE-SSSTEEEEEET------------
T ss_pred CCCCCeEEEEECcEEeeee-ccceeEEEEecCCCceEECcCCcc-----ccccceeecCCCeeEEEec------------
Confidence 8999999998764333332 566899999999999999976522 3568899999999999933
Q ss_pred CCCCceeeccccccccchhhhhccCCccchhhhhhheeeEEEEEcC-CCCceecCCCc-------------------eEE
Q 004475 119 PLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DGTAKDFGTPA-------------------VYT 178 (751)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~G~~~~lt~~~-------------------~~~ 178 (751)
.+||+.++ +++.++||..+ ...
T Consensus 63 --------------------------------------~nly~~~~~~~~~~~lT~dg~~~i~nG~~dwvyeEEv~~~~~ 104 (353)
T PF00930_consen 63 --------------------------------------NNLYLRDLATGQETQLTTDGEPGIYNGVPDWVYEEEVFDRRS 104 (353)
T ss_dssp --------------------------------------TEEEEESSTTSEEEESES--TTTEEESB--HHHHHHTSSSSB
T ss_pred --------------------------------------CceEEEECCCCCeEEeccccceeEEcCccceecccccccccc
Confidence 58999998 67888887642 123
Q ss_pred eeeeCCCCceEEEEEecCCcc--------------ccc----c---cCC--CceeEEEEeCCCceeeeeccCCCCCCCCC
Q 004475 179 AVEPSPDQKYVLITSMHRPYS--------------YKV----P---CAR--FSQKVQVWTTDGKLVRELCDLPPAEDIPV 235 (751)
Q Consensus 179 ~~~~SpDG~~i~~~~~~~~~~--------------~~~----~---~~~--~~~~l~~~d~~~~~~~~l~~~~~~~~~~~ 235 (751)
.+.|||||++|+|.+.+.... +.. + -+. -.-+|+++++++++...+... .
T Consensus 105 ~~~WSpd~~~la~~~~d~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G~~np~v~l~v~~~~~~~~~~~~~~-------~ 177 (353)
T PF00930_consen 105 AVWWSPDSKYLAFLRFDEREVPEYPLPDYSPPDSQYPEVESIRYPKAGDPNPRVSLFVVDLASGKTTELDPP-------N 177 (353)
T ss_dssp SEEE-TTSSEEEEEEEE-TTS-EEEEEEESSSTESS-EEEEEE--BTTS---EEEEEEEESSSTCCCEE----------H
T ss_pred ceEECCCCCEEEEEEECCcCCceEEeeccCCccccCCcccccccCCCCCcCCceEEEEEECCCCcEEEeeec-------c
Confidence 567999999999998765210 000 0 011 114688888887765433211 0
Q ss_pred ccCCccCCCceeeeecCCCceEEEEEeccCCCCccccCcccceeeccCCCCCCCCceEeE-ee-ceeE---E-EEEe-cC
Q 004475 236 CYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILH-KL-DLRF---S-VSWC-DD 308 (751)
Q Consensus 236 ~~~~~~~~~~~~~~spdG~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~-~~-~~~~---~-~~~s-pd 308 (751)
.+......+..+.|++|+++ +++.... +...+..|++++.. .+..+.+. .. .+-+ . +.+. ++
T Consensus 178 ~~~~~~~yl~~v~W~~d~~~-l~~~~~n-------R~q~~~~l~~~d~~---tg~~~~~~~e~~~~Wv~~~~~~~~~~~~ 246 (353)
T PF00930_consen 178 SLNPQDYYLTRVGWSPDGKR-LWVQWLN-------RDQNRLDLVLCDAS---TGETRVVLEETSDGWVDVYDPPHFLGPD 246 (353)
T ss_dssp HHHTSSEEEEEEEEEETTEE-EEEEEEE-------TTSTEEEEEEEEEC---TTTCEEEEEEESSSSSSSSSEEEE-TTT
T ss_pred ccCCCccCcccceecCCCcE-EEEEEcc-------cCCCEEEEEEEECC---CCceeEEEEecCCcceeeecccccccCC
Confidence 11122344668999999996 4443211 12223466777764 33333333 22 1111 1 4555 89
Q ss_pred CceEEEeeeecccceeEEEecCCCCCCcceeeeecccccccCCCCCCCeeeCCCCCEEEEeeeecCCcceEEEEccCCCC
Q 004475 309 SLALVNETWYKTSQTRTWLVCPGSKDVAPRVLFDRVFENVYSDPGSPMMTRTSTGTNVIAKIKKENDEQIYILLNGRGFT 388 (751)
Q Consensus 309 g~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~spDG~~l~~~~~~~~~~~~~~~~~~~~~~ 388 (751)
+..+++.+. .++..+||.++.+++ ..++|+.+...-... +.|+++++.|+|.+..
T Consensus 247 ~~~~l~~s~-~~G~~hly~~~~~~~--~~~~lT~G~~~V~~i------~~~d~~~~~iyf~a~~---------------- 301 (353)
T PF00930_consen 247 GNEFLWISE-RDGYRHLYLYDLDGG--KPRQLTSGDWEVTSI------LGWDEDNNRIYFTANG---------------- 301 (353)
T ss_dssp SSEEEEEEE-TTSSEEEEEEETTSS--EEEESS-SSS-EEEE------EEEECTSSEEEEEESS----------------
T ss_pred CCEEEEEEE-cCCCcEEEEEccccc--ceeccccCceeeccc------ceEcCCCCEEEEEecC----------------
Confidence 999988887 556789999999994 567888765442111 6799999999999932
Q ss_pred CCCCCceeEEEecC-CCceeEEeeccchhhhhceeeeecCCcceeeccCCCEEEEEEecCCCCC
Q 004475 389 PEGNIPFLDLFDIN-TGSKERIWESNREKYFETAVALVFGQGEEDINLNQLKILTSKESKTEIT 451 (751)
Q Consensus 389 ~~~~~~~l~~~d~~-~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~ 451 (751)
....+.+||+++++ +++.++|+..... + ..++|||||+.++.+.+++..|+
T Consensus 302 ~~p~~r~lY~v~~~~~~~~~~LT~~~~~----~--------~~~~~Spdg~y~v~~~s~~~~P~ 353 (353)
T PF00930_consen 302 DNPGERHLYRVSLDSGGEPKCLTCEDGD----H--------YSASFSPDGKYYVDTYSGPDTPP 353 (353)
T ss_dssp GGTTSBEEEEEETTETTEEEESSTTSST----T--------EEEEE-TTSSEEEEEEESSSSCE
T ss_pred CCCCceEEEEEEeCCCCCeEeccCCCCC----c--------eEEEECCCCCEEEEEEcCCCCCC
Confidence 12467899999999 8999998776542 1 23689999999999999888763
No 37
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.83 E-value=8.8e-19 Score=188.48 Aligned_cols=228 Identities=18% Similarity=0.187 Sum_probs=164.2
Q ss_pred cceeEEeecCCCCCCCCcccccCCCCcccccceeecCCCCeEEEEEeecccccccCCceeEEEEEcCCCCeeeccCCCCc
Q 004475 4 FTGIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDI 83 (751)
Q Consensus 4 ~~~~~~~~~~~~~~~g~~~~l~~~~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~~~~~l~i~~~~~g~~~~lt~~~~~ 83 (751)
...|+++|.++ +..++++.. ...+..|+|||||++|||+... .+..+||++++++|+.++++....
T Consensus 169 ~~~l~~~d~~g----~~~~~l~~~--~~~~~~p~~Spdg~~la~~~~~-------~~~~~i~v~d~~~g~~~~~~~~~~- 234 (417)
T TIGR02800 169 RYELQVADYDG----ANPQTITRS--REPILSPAWSPDGQKLAYVSFE-------SGKPEIYVQDLATGQREKVASFPG- 234 (417)
T ss_pred cceEEEEcCCC----CCCEEeecC--CCceecccCCCCCCEEEEEEcC-------CCCcEEEEEECCCCCEEEeecCCC-
Confidence 34699999988 888888742 2247899999999999998642 344789999999998888865443
Q ss_pred cccceeeeeEEecCCcEEEEeecCCCCCCCCCCCCCCCCceeeccccccccchhhhhccCCccchhhhhhheeeEEEEEc
Q 004475 84 CLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGS 163 (751)
Q Consensus 84 ~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 163 (751)
....++|||||+.|+|..... ...+||+++
T Consensus 235 ----~~~~~~~spDg~~l~~~~~~~----------------------------------------------~~~~i~~~d 264 (417)
T TIGR02800 235 ----MNGAPAFSPDGSKLAVSLSKD----------------------------------------------GNPDIYVMD 264 (417)
T ss_pred ----CccceEECCCCCEEEEEECCC----------------------------------------------CCccEEEEE
Confidence 234679999999999874321 114799999
Q ss_pred C-CCCceecCCC-ceEEeeeeCCCCceEEEEEecCCcccccccCCCceeEEEEeCCCceeeeeccCCCCCCCCCccCCcc
Q 004475 164 L-DGTAKDFGTP-AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVR 241 (751)
Q Consensus 164 ~-~G~~~~lt~~-~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~ 241 (751)
+ +++.++++.. .....+.|+|||++|++.+.... ..+||++++++++.++++....
T Consensus 265 ~~~~~~~~l~~~~~~~~~~~~s~dg~~l~~~s~~~g----------~~~iy~~d~~~~~~~~l~~~~~------------ 322 (417)
T TIGR02800 265 LDGKQLTRLTNGPGIDTEPSWSPDGKSIAFTSDRGG----------SPQIYMMDADGGEVRRLTFRGG------------ 322 (417)
T ss_pred CCCCCEEECCCCCCCCCCEEECCCCCEEEEEECCCC----------CceEEEEECCCCCEEEeecCCC------------
Confidence 9 5677888766 44457899999999999865421 2479999998887766643221
Q ss_pred CCCceeeeecCCCceEEEEEeccCCCCccccCcccceeeccCCCCCCCCceEeEeeceeEE-EEEecCCceEEEeeeecc
Q 004475 242 EGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFS-VSWCDDSLALVNETWYKT 320 (751)
Q Consensus 242 ~~~~~~~~spdG~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~-~~~spdg~~l~~~~~~~~ 320 (751)
....+.|||||++ |+++... ..+.+|++++++ ++..+.++.. .... +.|||||+.|+|.+...
T Consensus 323 -~~~~~~~spdg~~-i~~~~~~---------~~~~~i~~~d~~---~~~~~~l~~~-~~~~~p~~spdg~~l~~~~~~~- 386 (417)
T TIGR02800 323 -YNASPSWSPDGDL-IAFVHRE---------GGGFNIAVMDLD---GGGERVLTDT-GLDESPSFAPNGRMILYATTRG- 386 (417)
T ss_pred -CccCeEECCCCCE-EEEEEcc---------CCceEEEEEeCC---CCCeEEccCC-CCCCCceECCCCCEEEEEEeCC-
Confidence 1235699999998 7776521 123589999986 4445555443 2335 89999999999988653
Q ss_pred cceeEEEecCCCC
Q 004475 321 SQTRTWLVCPGSK 333 (751)
Q Consensus 321 ~~~~l~~~~~~~~ 333 (751)
....+++.+.++.
T Consensus 387 ~~~~l~~~~~~g~ 399 (417)
T TIGR02800 387 GRGVLGLVSTDGR 399 (417)
T ss_pred CcEEEEEEECCCc
Confidence 3367888887763
No 38
>TIGR02821 fghA_ester_D S-formylglutathione hydrolase. This model describes a protein family from bacteria, yeast, and human, with a conserved critical role in formaldehyde detoxification as S-formylglutathione hydrolase (EC 3.1.2.12). Members in eukaryotes such as the human protein are better known as esterase D (EC 3.1.1.1), an enzyme with broad specificity, although S-formylglutathione hydrolase has now been demonstrated as well.
Probab=99.83 E-value=9.5e-19 Score=175.10 Aligned_cols=237 Identities=19% Similarity=0.192 Sum_probs=148.3
Q ss_pred EEEEEEcC-CCceEEEEEEcCCCCCCCCCCCccEEEEEcCCCCcCcccCCcccCCCCccCCCCchHHHHH-HhCCeEEEE
Q 004475 482 EMIKYQRK-DGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIF-LARRFAVLA 559 (751)
Q Consensus 482 e~i~~~~~-~~~~i~~~~~~P~~~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~G~~v~~ 559 (751)
+..++.+. .+.++.+.+|+|++... +++|+|+++||.+. +...+.. ......+ .+.||.|++
T Consensus 14 ~~~~~~s~~~~~~~~~~v~~P~~~~~---~~~P~vvllHG~~~-----------~~~~~~~--~~~~~~la~~~g~~Vv~ 77 (275)
T TIGR02821 14 GFYRHKSETCGVPMTFGVFLPPQAAA---GPVPVLWYLSGLTC-----------THENFMI--KAGAQRFAAEHGLALVA 77 (275)
T ss_pred EEEEEeccccCCceEEEEEcCCCccC---CCCCEEEEccCCCC-----------CccHHHh--hhHHHHHHhhcCcEEEE
Confidence 34444442 45678899999986432 24899999999641 1111110 0112334 457999999
Q ss_pred cCCCCCCCCCCCCC--------Cch-h----------HHHHHHHHHH-HHHHHHHcCCCCCCcEEEEEeChHHHHHHHHH
Q 004475 560 GPSIPIIGEGDKLP--------NDR-F----------VEQLVSSAEA-AVEEVVRRGVADPSRIAVGGHSYGAFMTAHLL 619 (751)
Q Consensus 560 ~~~~~~~g~g~~~~--------~~~-~----------~~~~~~d~~~-~v~~l~~~~~id~~~i~l~G~S~GG~~a~~~a 619 (751)
++.. .+|.+.+.. ... + .......+.+ +...+.+...+|.++++++||||||++|+.++
T Consensus 78 Pd~~-~~g~~~~~~~~~w~~g~~~~~~~d~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~G~S~GG~~a~~~a 156 (275)
T TIGR02821 78 PDTS-PRGTGIAGEDDAWDFGKGAGFYVDATEEPWSQHYRMYSYIVQELPALVAAQFPLDGERQGITGHSMGGHGALVIA 156 (275)
T ss_pred eCCC-CCcCCCCCCcccccccCCccccccCCcCcccccchHHHHHHHHHHHHHHhhCCCCCCceEEEEEChhHHHHHHHH
Confidence 6652 223221100 000 0 0011222222 22333343457889999999999999999999
Q ss_pred HhCCCceeEEEEccCCCCCCCCccCcccccccchhhHHHHHhcCcccccC--CCCCCEEEEEcCCCCCCCCCh-HHHHHH
Q 004475 620 AHAPHLFCCGIARSGSYNKTLTPFGFQTEFRTLWEATNVYIEMSPITHAN--KIKKPILIIHGEVDDKVGLFP-MQAERF 696 (751)
Q Consensus 620 ~~~p~~~~~~v~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~P~li~~G~~D~~vp~~~-~~~~~~ 696 (751)
.++|+.++++++++|+++.....+.............+.+...++...+. +..+|+++.||+.|+++| . .+...+
T Consensus 157 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~plli~~G~~D~~v~--~~~~~~~~ 234 (275)
T TIGR02821 157 LKNPDRFKSVSAFAPIVAPSRCPWGQKAFSAYLGADEAAWRSYDASLLVADGGRHSTILIDQGTADQFLD--EQLRPDAF 234 (275)
T ss_pred HhCcccceEEEEECCccCcccCcchHHHHHHHhcccccchhhcchHHHHhhcccCCCeeEeecCCCcccC--ccccHHHH
Confidence 99999999999999987754322110000000001111222333333332 246899999999999998 7 577899
Q ss_pred HHHHHhCCCcEEEEEeCCCCCcCCccccHHHHHHHHHHHHHHHh
Q 004475 697 FDALKGHGALSRLVLLPFEHHVYAARENVMHVIWETDRWLQKYC 740 (751)
Q Consensus 697 ~~~l~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~fl~~~l 740 (751)
.++|++++.++++.++|+++|.+.. +...+...++|+.+++
T Consensus 235 ~~~l~~~g~~v~~~~~~g~~H~f~~---~~~~~~~~~~~~~~~~ 275 (275)
T TIGR02821 235 EQACRAAGQALTLRRQAGYDHSYYF---IASFIADHLRHHAERL 275 (275)
T ss_pred HHHHHHcCCCeEEEEeCCCCccchh---HHHhHHHHHHHHHhhC
Confidence 9999999999999999999999764 5577888888887763
No 39
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.82 E-value=3e-18 Score=184.37 Aligned_cols=231 Identities=17% Similarity=0.195 Sum_probs=163.6
Q ss_pred cCCCCeEEEEEeecccccccCCceeEEEEEcCCCCeeeccCCCCccccceeeeeEEecCCcEEEEeecCCCCCCCCCCCC
Q 004475 39 SPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMV 118 (751)
Q Consensus 39 SPDG~~iaf~~~~~~~~~~~~~~~~l~i~~~~~g~~~~lt~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~ 118 (751)
.+.+.+++|++... ..+..+||+++.++++.++|+.... .+..++|||||++|+|......
T Consensus 152 ~~~~~~~~~~~~~~-----~~~~~~l~~~d~~g~~~~~l~~~~~-----~~~~p~~Spdg~~la~~~~~~~--------- 212 (417)
T TIGR02800 152 GAFSTRIAYVSKSG-----KSRRYELQVADYDGANPQTITRSRE-----PILSPAWSPDGQKLAYVSFESG--------- 212 (417)
T ss_pred CCcCCEEEEEEEeC-----CCCcceEEEEcCCCCCCEEeecCCC-----ceecccCCCCCCEEEEEEcCCC---------
Confidence 34578899987532 1456899999999888999986554 2567799999999999854311
Q ss_pred CCCCceeeccccccccchhhhhccCCccchhhhhhheeeEEEEEcC-CCCceecCCC-ceEEeeeeCCCCceEEEEEecC
Q 004475 119 PLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DGTAKDFGTP-AVYTAVEPSPDQKYVLITSMHR 196 (751)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~G~~~~lt~~-~~~~~~~~SpDG~~i~~~~~~~ 196 (751)
..+|+++++ +|+.+.++.. .....++|||||+.|+|.....
T Consensus 213 -------------------------------------~~~i~v~d~~~g~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~ 255 (417)
T TIGR02800 213 -------------------------------------KPEIYVQDLATGQREKVASFPGMNGAPAFSPDGSKLAVSLSKD 255 (417)
T ss_pred -------------------------------------CcEEEEEECCCCCEEEeecCCCCccceEECCCCCEEEEEECCC
Confidence 147999999 6666666655 4556789999999999875432
Q ss_pred CcccccccCCCceeEEEEeCCCceeeeeccCCCCCCCCCccCCccCCCceeeeecCCCceEEEEEeccCCCCccccCccc
Q 004475 197 PYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRD 276 (751)
Q Consensus 197 ~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~spdG~~~i~~~~~~~~~~~~~~~~~~~ 276 (751)
. ..+||+++++++..++++..... .....|+|||++ |++.+.. ....
T Consensus 256 ~----------~~~i~~~d~~~~~~~~l~~~~~~-------------~~~~~~s~dg~~-l~~~s~~---------~g~~ 302 (417)
T TIGR02800 256 G----------NPDIYVMDLDGKQLTRLTNGPGI-------------DTEPSWSPDGKS-IAFTSDR---------GGSP 302 (417)
T ss_pred C----------CccEEEEECCCCCEEECCCCCCC-------------CCCEEECCCCCE-EEEEECC---------CCCc
Confidence 1 35799999998877777544322 124589999999 7776521 1224
Q ss_pred ceeeccCCCCCCCCceEeEeeceeEE-EEEecCCceEEEeeeecccceeEEEecCCCCCCcceeeeecccccccCCCCCC
Q 004475 277 IIYTQPAEPAEGEKPEILHKLDLRFS-VSWCDDSLALVNETWYKTSQTRTWLVCPGSKDVAPRVLFDRVFENVYSDPGSP 355 (751)
Q Consensus 277 ~l~~~~~~~~~~~~~~~l~~~~~~~~-~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 355 (751)
+||+++++ ++..+.++....... +.|||||+.|+|..... ...+|+++++.++ ..+.++.... . .
T Consensus 303 ~iy~~d~~---~~~~~~l~~~~~~~~~~~~spdg~~i~~~~~~~-~~~~i~~~d~~~~--~~~~l~~~~~-~-----~-- 368 (417)
T TIGR02800 303 QIYMMDAD---GGEVRRLTFRGGYNASPSWSPDGDLIAFVHREG-GGFNIAVMDLDGG--GERVLTDTGL-D-----E-- 368 (417)
T ss_pred eEEEEECC---CCCEEEeecCCCCccCeEECCCCCEEEEEEccC-CceEEEEEeCCCC--CeEEccCCCC-C-----C--
Confidence 79999986 555666665544455 99999999999987533 3468999999874 4444543211 1 1
Q ss_pred CeeeCCCCCEEEEeeee
Q 004475 356 MMTRTSTGTNVIAKIKK 372 (751)
Q Consensus 356 ~~~~spDG~~l~~~~~~ 372 (751)
.++|+|||+.|+|...+
T Consensus 369 ~p~~spdg~~l~~~~~~ 385 (417)
T TIGR02800 369 SPSFAPNGRMILYATTR 385 (417)
T ss_pred CceECCCCCEEEEEEeC
Confidence 16799999999998843
No 40
>PLN02442 S-formylglutathione hydrolase
Probab=99.82 E-value=1.8e-18 Score=173.24 Aligned_cols=239 Identities=22% Similarity=0.238 Sum_probs=150.4
Q ss_pred ceEEEEEEc-CCCceEEEEEEcCCCCCCCCCCCccEEEEEcCCCCcCcccCCcccCCCCccCCCCchHHHHHHhCCeEEE
Q 004475 480 QKEMIKYQR-KDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVL 558 (751)
Q Consensus 480 ~~e~i~~~~-~~~~~i~~~~~~P~~~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~v~ 558 (751)
..+.+++.+ .-+..+.+.+|+|++. . ..++|+|+++||.+. +...+... ......+...||+|+
T Consensus 17 ~~~~~~~~s~~l~~~~~~~vy~P~~~-~--~~~~Pvv~~lHG~~~-----------~~~~~~~~-~~~~~~~~~~g~~Vv 81 (283)
T PLN02442 17 FNRRYKHFSSTLGCSMTFSVYFPPAS-D--SGKVPVLYWLSGLTC-----------TDENFIQK-SGAQRAAAARGIALV 81 (283)
T ss_pred EEEEEEEeccccCCceEEEEEcCCcc-c--CCCCCEEEEecCCCc-----------ChHHHHHh-hhHHHHHhhcCeEEE
Confidence 455555555 3556899999999842 2 236999999999631 11111111 112345567899999
Q ss_pred EcCCCCCCC-------------CCCCC-----CC----chhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHH
Q 004475 559 AGPSIPIIG-------------EGDKL-----PN----DRFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTA 616 (751)
Q Consensus 559 ~~~~~~~~g-------------~g~~~-----~~----~~~~~~~~~d~~~~v~~l~~~~~id~~~i~l~G~S~GG~~a~ 616 (751)
.++.. .+| .+.+. .. ..+...+.+++...++... ..+|+++++|+|+||||++|+
T Consensus 82 ~pd~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~--~~~~~~~~~i~G~S~GG~~a~ 158 (283)
T PLN02442 82 APDTS-PRGLNVEGEADSWDFGVGAGFYLNATQEKWKNWRMYDYVVKELPKLLSDNF--DQLDTSRASIFGHSMGGHGAL 158 (283)
T ss_pred ecCCC-CCCCCCCCCccccccCCCcceeeccccCCCcccchhhhHHHHHHHHHHHHH--HhcCCCceEEEEEChhHHHHH
Confidence 96642 111 01100 00 0122233444444443332 236888999999999999999
Q ss_pred HHHHhCCCceeEEEEccCCCCCCCCccCcccccccchhhHHHHHhc---CcccccCCCCCCEEEEEcCCCCCCCCChH-H
Q 004475 617 HLLAHAPHLFCCGIARSGSYNKTLTPFGFQTEFRTLWEATNVYIEM---SPITHANKIKKPILIIHGEVDDKVGLFPM-Q 692 (751)
Q Consensus 617 ~~a~~~p~~~~~~v~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~P~li~~G~~D~~vp~~~~-~ 692 (751)
.++.++|++++++++++|+++.....+.........-...+.+.++ +++..+...++|+|++||++|.+++ .. +
T Consensus 159 ~~a~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~d~~~~~~~~~~~~~pvli~~G~~D~~v~--~~~~ 236 (283)
T PLN02442 159 TIYLKNPDKYKSVSAFAPIANPINCPWGQKAFTNYLGSDKADWEEYDATELVSKFNDVSATILIDQGEADKFLK--EQLL 236 (283)
T ss_pred HHHHhCchhEEEEEEECCccCcccCchhhHHHHHHcCCChhhHHHcChhhhhhhccccCCCEEEEECCCCcccc--cccc
Confidence 9999999999999999998774322211100000000111223333 3444455568999999999999987 53 4
Q ss_pred HHHHHHHHHhCCCcEEEEEeCCCCCcCCccccHHHHHHHHHHHHHHHhc
Q 004475 693 AERFFDALKGHGALSRLVLLPFEHHVYAARENVMHVIWETDRWLQKYCL 741 (751)
Q Consensus 693 ~~~~~~~l~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~fl~~~l~ 741 (751)
++.+++++++.+.+++++++|+.+|.+. ....++++.+.|..++++
T Consensus 237 s~~~~~~l~~~g~~~~~~~~pg~~H~~~---~~~~~i~~~~~~~~~~~~ 282 (283)
T PLN02442 237 PENFEEACKEAGAPVTLRLQPGYDHSYF---FIATFIDDHINHHAQALK 282 (283)
T ss_pred HHHHHHHHHHcCCCeEEEEeCCCCccHH---HHHHHHHHHHHHHHHHhc
Confidence 7889999999999999999999999865 344555666666666654
No 41
>PHA02857 monoglyceride lipase; Provisional
Probab=99.82 E-value=2.2e-18 Score=174.12 Aligned_cols=222 Identities=18% Similarity=0.137 Sum_probs=153.1
Q ss_pred EcCCCceEEEEEEcCCCCCCCCCCCccEEEEEcCCCCcCcccCCcccCCCCccCCCCchHHHHHHhCCeEEEEcCCCCCC
Q 004475 487 QRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGPSIPII 566 (751)
Q Consensus 487 ~~~~~~~i~~~~~~P~~~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~v~~~~~~~~~ 566 (751)
...+|..+.+.+|.|.. .+.|+|+++||.+. ...........|+.+||.|++ +|.+
T Consensus 6 ~~~~g~~l~~~~~~~~~------~~~~~v~llHG~~~---------------~~~~~~~~~~~l~~~g~~via---~D~~ 61 (276)
T PHA02857 6 FNLDNDYIYCKYWKPIT------YPKALVFISHGAGE---------------HSGRYEELAENISSLGILVFS---HDHI 61 (276)
T ss_pred ecCCCCEEEEEeccCCC------CCCEEEEEeCCCcc---------------ccchHHHHHHHHHhCCCEEEE---ccCC
Confidence 34688899999998852 23688999999531 111223456678889999999 6777
Q ss_pred CCCCCCCCc---hhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEccCCCCCCCCcc
Q 004475 567 GEGDKLPND---RFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGSYNKTLTPF 643 (751)
Q Consensus 567 g~g~~~~~~---~~~~~~~~d~~~~v~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~~d~~~~~~ 643 (751)
|+|.+.... ......++|+...++++++.. ...+++++||||||.+|+.++.++|+.++++|+.+|..+......
T Consensus 62 G~G~S~~~~~~~~~~~~~~~d~~~~l~~~~~~~--~~~~~~lvG~S~GG~ia~~~a~~~p~~i~~lil~~p~~~~~~~~~ 139 (276)
T PHA02857 62 GHGRSNGEKMMIDDFGVYVRDVVQHVVTIKSTY--PGVPVFLLGHSMGATISILAAYKNPNLFTAMILMSPLVNAEAVPR 139 (276)
T ss_pred CCCCCCCccCCcCCHHHHHHHHHHHHHHHHhhC--CCCCEEEEEcCchHHHHHHHHHhCccccceEEEeccccccccccH
Confidence 888764322 233456788888888876542 246799999999999999999999999999999998654211000
Q ss_pred -----------Cccccc----ccch--h---hHHHH----------------H---hc--CcccccCCCCCCEEEEEcCC
Q 004475 644 -----------GFQTEF----RTLW--E---ATNVY----------------I---EM--SPITHANKIKKPILIIHGEV 682 (751)
Q Consensus 644 -----------~~~~~~----~~~~--~---~~~~~----------------~---~~--~~~~~~~~~~~P~li~~G~~ 682 (751)
...... ...+ . ....+ . .. .....+.++++|+|++||++
T Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~Pvliv~G~~ 219 (276)
T PHA02857 140 LNLLAAKLMGIFYPNKIVGKLCPESVSRDMDEVYKYQYDPLVNHEKIKAGFASQVLKATNKVRKIIPKIKTPILILQGTN 219 (276)
T ss_pred HHHHHHHHHHHhCCCCccCCCCHhhccCCHHHHHHHhcCCCccCCCccHHHHHHHHHHHHHHHHhcccCCCCEEEEecCC
Confidence 000000 0000 0 00000 0 00 01234567899999999999
Q ss_pred CCCCCCChHHHHHHHHHHHhCCCcEEEEEeCCCCCcCCcccc--HHHHHHHHHHHHHHH
Q 004475 683 DDKVGLFPMQAERFFDALKGHGALSRLVLLPFEHHVYAAREN--VMHVIWETDRWLQKY 739 (751)
Q Consensus 683 D~~vp~~~~~~~~~~~~l~~~~~~~~~~~~~~~~H~~~~~~~--~~~~~~~~~~fl~~~ 739 (751)
|.++| +..+..+.+.+.. ++++.++++++|....... .+++++.+.+||+.+
T Consensus 220 D~i~~--~~~~~~l~~~~~~---~~~~~~~~~~gH~~~~e~~~~~~~~~~~~~~~l~~~ 273 (276)
T PHA02857 220 NEISD--VSGAYYFMQHANC---NREIKIYEGAKHHLHKETDEVKKSVMKEIETWIFNR 273 (276)
T ss_pred CCcCC--hHHHHHHHHHccC---CceEEEeCCCcccccCCchhHHHHHHHHHHHHHHHh
Confidence 99999 8988888876633 4689999999999875533 678999999999986
No 42
>PF05448 AXE1: Acetyl xylan esterase (AXE1); InterPro: IPR008391 This family consists of several bacterial acetyl xylan esterase proteins. Acetyl xylan esterases are enzymes that hydrolyse the ester linkages of the acetyl groups in position 2 and/or 3 of the xylose moieties of natural acetylated xylan from hardwood. These enzymes are one of the accessory enzymes which are part of the xylanolytic system, together with xylanases, beta-xylosidases, alpha-arabinofuranosidases and methylglucuronidases; these are all required for the complete hydrolysis of xylan [].; PDB: 1VLQ_H 3M81_E 3M82_D 3M83_C 3FCY_A 1ODS_F 1ODT_C 1L7A_A 3FYT_A 2XLB_F ....
Probab=99.81 E-value=4e-19 Score=178.13 Aligned_cols=232 Identities=20% Similarity=0.175 Sum_probs=152.3
Q ss_pred cCCceEEEEEEcCCCceEEEEEEcCCCCCCCCCCCccEEEEEcCCCCcCcccCCcccCCCCccCCCCchHHHHHHhCCeE
Q 004475 477 ASLQKEMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFA 556 (751)
Q Consensus 477 ~~~~~e~i~~~~~~~~~i~~~~~~P~~~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~ 556 (751)
+...+..++|.+.+|..|.|+++.|... ++++|+||.+||.|... ........++.+||+
T Consensus 52 ~~~~vy~v~f~s~~g~~V~g~l~~P~~~----~~~~Pavv~~hGyg~~~----------------~~~~~~~~~a~~G~~ 111 (320)
T PF05448_consen 52 PGVEVYDVSFESFDGSRVYGWLYRPKNA----KGKLPAVVQFHGYGGRS----------------GDPFDLLPWAAAGYA 111 (320)
T ss_dssp SSEEEEEEEEEEGGGEEEEEEEEEES-S----SSSEEEEEEE--TT--G----------------GGHHHHHHHHHTT-E
T ss_pred CCEEEEEEEEEccCCCEEEEEEEecCCC----CCCcCEEEEecCCCCCC----------------CCcccccccccCCeE
Confidence 4567889999999999999999999842 45799999999975211 011224467899999
Q ss_pred EEEcCCCCCCCCC------------------CCC-CCchhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHH
Q 004475 557 VLAGPSIPIIGEG------------------DKL-PNDRFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAH 617 (751)
Q Consensus 557 v~~~~~~~~~g~g------------------~~~-~~~~~~~~~~~d~~~~v~~l~~~~~id~~~i~l~G~S~GG~~a~~ 617 (751)
|+.++.++..|.. ... ....++...+.|+.+++++|.+++.+|++||+++|.|+||.+++.
T Consensus 112 vl~~d~rGqg~~~~d~~~~~~~~~~g~~~~g~~~~~e~~yyr~~~~D~~ravd~l~slpevD~~rI~v~G~SqGG~lal~ 191 (320)
T PF05448_consen 112 VLAMDVRGQGGRSPDYRGSSGGTLKGHITRGIDDNPEDYYYRRVYLDAVRAVDFLRSLPEVDGKRIGVTGGSQGGGLALA 191 (320)
T ss_dssp EEEE--TTTSSSS-B-SSBSSS-SSSSTTTTTTS-TTT-HHHHHHHHHHHHHHHHHTSTTEEEEEEEEEEETHHHHHHHH
T ss_pred EEEecCCCCCCCCCCccccCCCCCccHHhcCccCchHHHHHHHHHHHHHHHHHHHHhCCCcCcceEEEEeecCchHHHHH
Confidence 9995544333211 001 223345677899999999999999999999999999999999999
Q ss_pred HHHhCCCceeEEEEccCCCCCCCCccCcccccccchh---------------h---HHHHHhcCcccccCCCCCCEEEEE
Q 004475 618 LLAHAPHLFCCGIARSGSYNKTLTPFGFQTEFRTLWE---------------A---TNVYIEMSPITHANKIKKPILIIH 679 (751)
Q Consensus 618 ~a~~~p~~~~~~v~~~~~~d~~~~~~~~~~~~~~~~~---------------~---~~~~~~~~~~~~~~~~~~P~li~~ 679 (751)
+|+.+ ++++++++..|.+......+.... ...+|. . .+.+.-++....+.+|++|+|+..
T Consensus 192 ~aaLd-~rv~~~~~~vP~l~d~~~~~~~~~-~~~~y~~~~~~~~~~d~~~~~~~~v~~~L~Y~D~~nfA~ri~~pvl~~~ 269 (320)
T PF05448_consen 192 AAALD-PRVKAAAADVPFLCDFRRALELRA-DEGPYPEIRRYFRWRDPHHEREPEVFETLSYFDAVNFARRIKCPVLFSV 269 (320)
T ss_dssp HHHHS-ST-SEEEEESESSSSHHHHHHHT---STTTHHHHHHHHHHSCTHCHHHHHHHHHHTT-HHHHGGG--SEEEEEE
T ss_pred HHHhC-ccccEEEecCCCccchhhhhhcCC-ccccHHHHHHHHhccCCCcccHHHHHHHHhhhhHHHHHHHcCCCEEEEE
Confidence 99999 579999998886431100000000 000110 0 112333455667788999999999
Q ss_pred cCCCCCCCCChHHHHHHHHHHHhCCCcEEEEEeCCCCCcCCccccHHHHHHHHHHHHHHH
Q 004475 680 GEVDDKVGLFPMQAERFFDALKGHGALSRLVLLPFEHHVYAARENVMHVIWETDRWLQKY 739 (751)
Q Consensus 680 G~~D~~vp~~~~~~~~~~~~l~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~fl~~~ 739 (751)
|-.|++|| +......++++.. +.++.+||..+|.... ....++.++||.++
T Consensus 270 gl~D~~cP--P~t~fA~yN~i~~---~K~l~vyp~~~He~~~----~~~~~~~~~~l~~~ 320 (320)
T PF05448_consen 270 GLQDPVCP--PSTQFAAYNAIPG---PKELVVYPEYGHEYGP----EFQEDKQLNFLKEH 320 (320)
T ss_dssp ETT-SSS---HHHHHHHHCC--S---SEEEEEETT--SSTTH----HHHHHHHHHHHHH-
T ss_pred ecCCCCCC--chhHHHHHhccCC---CeeEEeccCcCCCchh----hHHHHHHHHHHhcC
Confidence 99999999 9999888888853 5799999999998642 22367788999875
No 43
>COG0412 Dienelactone hydrolase and related enzymes [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.81 E-value=4.2e-18 Score=163.75 Aligned_cols=212 Identities=19% Similarity=0.188 Sum_probs=163.5
Q ss_pred EEEEEEcCCCceEEEEEEcCCCCCCCCCCCccEEEEEcCCCCcCcccCCcccCCCCccCCCCchHHHHHHhCCeEEEEcC
Q 004475 482 EMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGP 561 (751)
Q Consensus 482 e~i~~~~~~~~~i~~~~~~P~~~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~v~~~~ 561 (751)
+.+.++..+ .++.+++..|.+ +++.|+||++|+-. +........+..++.+||+|++++
T Consensus 3 ~~v~~~~~~-~~~~~~~a~P~~-----~~~~P~VIv~hei~---------------Gl~~~i~~~a~rlA~~Gy~v~~Pd 61 (236)
T COG0412 3 TDVTIPAPD-GELPAYLARPAG-----AGGFPGVIVLHEIF---------------GLNPHIRDVARRLAKAGYVVLAPD 61 (236)
T ss_pred cceEeeCCC-ceEeEEEecCCc-----CCCCCEEEEEeccc---------------CCchHHHHHHHHHHhCCcEEEech
Confidence 456677655 789999999987 44469999999841 122223356789999999999977
Q ss_pred CCCCCCCCCCCC--C----c-----hhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEE
Q 004475 562 SIPIIGEGDKLP--N----D-----RFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGI 630 (751)
Q Consensus 562 ~~~~~g~g~~~~--~----~-----~~~~~~~~d~~~~v~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v 630 (751)
-+...|...... . . ........|+.++++||.+++.++..+|+++|+||||.+|+.++.+.| .++++|
T Consensus 62 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~a~~~~L~~~~~~~~~~ig~~GfC~GG~~a~~~a~~~~-~v~a~v 140 (236)
T COG0412 62 LYGRQGDPTDIEDEPAELETGLVERVDPAEVLADIDAALDYLARQPQVDPKRIGVVGFCMGGGLALLAATRAP-EVKAAV 140 (236)
T ss_pred hhccCCCCCcccccHHHHhhhhhccCCHHHHHHHHHHHHHHHHhCCCCCCceEEEEEEcccHHHHHHhhcccC-CccEEE
Confidence 655444332211 0 0 111466899999999999998889999999999999999999999986 799999
Q ss_pred EccCCCCCCCCccCcccccccchhhHHHHHhcCcccccCCCCCCEEEEEcCCCCCCCCChHHHHHHHHHHHhCCCcEEEE
Q 004475 631 ARSGSYNKTLTPFGFQTEFRTLWEATNVYIEMSPITHANKIKKPILIIHGEVDDKVGLFPMQAERFFDALKGHGALSRLV 710 (751)
Q Consensus 631 ~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~li~~G~~D~~vp~~~~~~~~~~~~l~~~~~~~~~~ 710 (751)
++.|..-... .....++++|+|+.+|+.|+.+| ......+.+++..+++.+++.
T Consensus 141 ~fyg~~~~~~------------------------~~~~~~~~~pvl~~~~~~D~~~p--~~~~~~~~~~~~~~~~~~~~~ 194 (236)
T COG0412 141 AFYGGLIADD------------------------TADAPKIKVPVLLHLAGEDPYIP--AADVDALAAALEDAGVKVDLE 194 (236)
T ss_pred EecCCCCCCc------------------------ccccccccCcEEEEecccCCCCC--hhHHHHHHHHHHhcCCCeeEE
Confidence 9998532100 01145789999999999999998 888899999999988899999
Q ss_pred EeCCCCCcCCccc----------cHHHHHHHHHHHHHHHhc
Q 004475 711 LLPFEHHVYAARE----------NVMHVIWETDRWLQKYCL 741 (751)
Q Consensus 711 ~~~~~~H~~~~~~----------~~~~~~~~~~~fl~~~l~ 741 (751)
+|+++.|.|.... .....++++++||.+++.
T Consensus 195 ~y~ga~H~F~~~~~~~~~~y~~~aa~~a~~~~~~ff~~~~~ 235 (236)
T COG0412 195 IYPGAGHGFANDRADYHPGYDAAAAEDAWQRVLAFFKRLLG 235 (236)
T ss_pred EeCCCccccccCCCcccccCCHHHHHHHHHHHHHHHHHhcc
Confidence 9999999998542 135678899999998875
No 44
>PRK10749 lysophospholipase L2; Provisional
Probab=99.80 E-value=4.9e-18 Score=175.19 Aligned_cols=230 Identities=14% Similarity=0.159 Sum_probs=157.1
Q ss_pred eEEEEEEcCCCceEEEEEEcCCCCCCCCCCCccEEEEEcCCCCcCcccCCcccCCCCccCCCCchHHHHHHhCCeEEEEc
Q 004475 481 KEMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAG 560 (751)
Q Consensus 481 ~e~i~~~~~~~~~i~~~~~~P~~~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~v~~~ 560 (751)
.+...+...+|..+.+..+.|.. +.|+||++||.+ .........+..++++||.|++
T Consensus 30 ~~~~~~~~~~g~~l~~~~~~~~~-------~~~~vll~HG~~---------------~~~~~y~~~~~~l~~~g~~v~~- 86 (330)
T PRK10749 30 REEAEFTGVDDIPIRFVRFRAPH-------HDRVVVICPGRI---------------ESYVKYAELAYDLFHLGYDVLI- 86 (330)
T ss_pred ccceEEEcCCCCEEEEEEccCCC-------CCcEEEEECCcc---------------chHHHHHHHHHHHHHCCCeEEE-
Confidence 45666777788889998887642 247899999952 1111122345567889999999
Q ss_pred CCCCCCCCCCCCCC--------chhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEc
Q 004475 561 PSIPIIGEGDKLPN--------DRFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIAR 632 (751)
Q Consensus 561 ~~~~~~g~g~~~~~--------~~~~~~~~~d~~~~v~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~ 632 (751)
++.+|+|.+... ........+|+..+++.+... .+..++.++||||||.+++.++.++|+.++++|+.
T Consensus 87 --~D~~G~G~S~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~--~~~~~~~l~GhSmGG~ia~~~a~~~p~~v~~lvl~ 162 (330)
T PRK10749 87 --IDHRGQGRSGRLLDDPHRGHVERFNDYVDDLAAFWQQEIQP--GPYRKRYALAHSMGGAILTLFLQRHPGVFDAIALC 162 (330)
T ss_pred --EcCCCCCCCCCCCCCCCcCccccHHHHHHHHHHHHHHHHhc--CCCCCeEEEEEcHHHHHHHHHHHhCCCCcceEEEE
Confidence 666788776421 123567788888888877554 23468999999999999999999999999999999
Q ss_pred cCCCCCCCC-c-c-----------------------C-ccccc-ccch--hhH-------HHHHhc--------------
Q 004475 633 SGSYNKTLT-P-F-----------------------G-FQTEF-RTLW--EAT-------NVYIEM-------------- 662 (751)
Q Consensus 633 ~~~~d~~~~-~-~-----------------------~-~~~~~-~~~~--~~~-------~~~~~~-------------- 662 (751)
+|....... + . . +.... ...| ... +.+...
T Consensus 163 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (330)
T PRK10749 163 APMFGIVLPLPSWMARRILNWAEGHPRIRDGYAIGTGRWRPLPFAINVLTHSRERYRRNLRFYADDPELRVGGPTYHWVR 242 (330)
T ss_pred CchhccCCCCCcHHHHHHHHHHHHhcCCCCcCCCCCCCCCCCCcCCCCCCCCHHHHHHHHHHHHhCCCcccCCCcHHHHH
Confidence 886431100 0 0 0 00000 0000 000 011100
Q ss_pred -------CcccccCCCCCCEEEEEcCCCCCCCCChHHHHHHHHHHHhCC---CcEEEEEeCCCCCcCCcccc--HHHHHH
Q 004475 663 -------SPITHANKIKKPILIIHGEVDDKVGLFPMQAERFFDALKGHG---ALSRLVLLPFEHHVYAAREN--VMHVIW 730 (751)
Q Consensus 663 -------~~~~~~~~~~~P~li~~G~~D~~vp~~~~~~~~~~~~l~~~~---~~~~~~~~~~~~H~~~~~~~--~~~~~~ 730 (751)
.....+.++++|+|++||++|.+++ +..++.+++.++..+ ..++++++|+++|....... ...+++
T Consensus 243 ~~~~~~~~~~~~~~~i~~P~Lii~G~~D~vv~--~~~~~~~~~~l~~~~~~~~~~~l~~~~gagH~~~~E~~~~r~~v~~ 320 (330)
T PRK10749 243 ESILAGEQVLAGAGDITTPLLLLQAEEERVVD--NRMHDRFCEARTAAGHPCEGGKPLVIKGAYHEILFEKDAMRSVALN 320 (330)
T ss_pred HHHHHHHHHHhhccCCCCCEEEEEeCCCeeeC--HHHHHHHHHHHhhcCCCCCCceEEEeCCCcchhhhCCcHHHHHHHH
Confidence 1123456789999999999999999 899999999887654 34689999999999875443 567889
Q ss_pred HHHHHHHHH
Q 004475 731 ETDRWLQKY 739 (751)
Q Consensus 731 ~~~~fl~~~ 739 (751)
.+.+||+++
T Consensus 321 ~i~~fl~~~ 329 (330)
T PRK10749 321 AIVDFFNRH 329 (330)
T ss_pred HHHHHHhhc
Confidence 999999864
No 45
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=99.80 E-value=3.6e-18 Score=177.25 Aligned_cols=229 Identities=17% Similarity=0.211 Sum_probs=162.4
Q ss_pred ceeEEeecCCCCCCCCcccccCCCCcccccceeecCCCCeEEEEEeecccccccCCceeEEEEEcCCCCeeeccCCCCcc
Q 004475 5 TGIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDIC 84 (751)
Q Consensus 5 ~~~~~~~~~~~~~~g~~~~l~~~~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~~~~~l~i~~~~~g~~~~lt~~~~~~ 84 (751)
.++++.|-++ -..+.++ ........|.|||||++|+|+.-.. ....++|++++++|+..++......
T Consensus 173 ~~l~~~D~dg----~~~~~l~--~~~~~~~~p~ws~~~~~~~y~~f~~------~~~~~i~~~~l~~g~~~~i~~~~g~- 239 (425)
T COG0823 173 YELALGDYDG----YNQQKLT--DSGSLILTPAWSPDGKKLAYVSFEL------GGCPRIYYLDLNTGKRPVILNFNGN- 239 (425)
T ss_pred ceEEEEccCC----cceeEec--ccCcceeccccCcCCCceEEEEEec------CCCceEEEEeccCCccceeeccCCc-
Confidence 3455555544 4444454 2233578899999999999986421 2227999999999987777664442
Q ss_pred ccceeeeeEEecCCcEEEEeecCCCCCCCCCCCCCCCCceeeccccccccchhhhhccCCccchhhhhhheeeEEEEEcC
Q 004475 85 LNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL 164 (751)
Q Consensus 85 ~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 164 (751)
-..++|||||++|+|..... ...+||++|+
T Consensus 240 ----~~~P~fspDG~~l~f~~~rd----------------------------------------------g~~~iy~~dl 269 (425)
T COG0823 240 ----NGAPAFSPDGSKLAFSSSRD----------------------------------------------GSPDIYLMDL 269 (425)
T ss_pred ----cCCccCCCCCCEEEEEECCC----------------------------------------------CCccEEEEcC
Confidence 35779999999999996532 1158999999
Q ss_pred CC-CceecCCC-ceEEeeeeCCCCceEEEEEecCCcccccccCCCceeEEEEeCCCceeeeeccCCCCCCCCCccCCccC
Q 004475 165 DG-TAKDFGTP-AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVRE 242 (751)
Q Consensus 165 ~G-~~~~lt~~-~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~ 242 (751)
++ +.++|++. +....+.|||||++|+|.++... ..+||++++++++.++++...+....
T Consensus 270 ~~~~~~~Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G----------~p~I~~~~~~g~~~~riT~~~~~~~~--------- 330 (425)
T COG0823 270 DGKNLPRLTNGFGINTSPSWSPDGSKIVFTSDRGG----------RPQIYLYDLEGSQVTRLTFSGGGNSN--------- 330 (425)
T ss_pred CCCcceecccCCccccCccCCCCCCEEEEEeCCCC----------CcceEEECCCCCceeEeeccCCCCcC---------
Confidence 55 77778887 55569999999999999976643 35899999999999888776554333
Q ss_pred CCceeeeecCCCceEEEEEeccCCCCccccCcccceeeccCCCCCCCCceEeEeeceeEE-EEEecCCceEEEeeeeccc
Q 004475 243 GMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFS-VSWCDDSLALVNETWYKTS 321 (751)
Q Consensus 243 ~~~~~~~spdG~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~-~~~spdg~~l~~~~~~~~~ 321 (751)
..|||||++ |++.+.. ++ +-.+...++.. +.. ..+........ +.|+|+|+.|.|.+... .
T Consensus 331 ----p~~SpdG~~-i~~~~~~-~g--------~~~i~~~~~~~--~~~-~~~lt~~~~~e~ps~~~ng~~i~~~s~~~-~ 392 (425)
T COG0823 331 ----PVWSPDGDK-IVFESSS-GG--------QWDIDKNDLAS--GGK-IRILTSTYLNESPSWAPNGRMIMFSSGQG-G 392 (425)
T ss_pred ----ccCCCCCCE-EEEEecc-CC--------ceeeEEeccCC--CCc-EEEccccccCCCCCcCCCCceEEEeccCC-C
Confidence 499999999 8887622 11 12466666531 222 33444444445 89999999999988544 4
Q ss_pred ceeEEEecCCCC
Q 004475 322 QTRTWLVCPGSK 333 (751)
Q Consensus 322 ~~~l~~~~~~~~ 333 (751)
...++.+..++.
T Consensus 393 ~~~l~~~s~~g~ 404 (425)
T COG0823 393 GSVLSLVSLDGR 404 (425)
T ss_pred CceEEEeeccce
Confidence 567888887773
No 46
>KOG4391 consensus Predicted alpha/beta hydrolase BEM46 [General function prediction only]
Probab=99.79 E-value=1.7e-18 Score=152.16 Aligned_cols=235 Identities=20% Similarity=0.260 Sum_probs=170.8
Q ss_pred CCCCccCCceEEEEEEcCCCceEEEEEEcCCCCCCCCCCCccEEEEEcCCCCcCcccCCcccCCCCccCCCCchH-HHHH
Q 004475 472 PYPTLASLQKEMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTS-SLIF 550 (751)
Q Consensus 472 ~~~~~~~~~~e~i~~~~~~~~~i~~~~~~P~~~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 550 (751)
+.|....++.|++++.+.|..++.+++.+.++ ..|+++++|+.. |++. ..... ...+
T Consensus 45 ptP~~~n~pye~i~l~T~D~vtL~a~~~~~E~-------S~pTlLyfh~NA-------GNmG--------hr~~i~~~fy 102 (300)
T KOG4391|consen 45 PTPKEFNMPYERIELRTRDKVTLDAYLMLSES-------SRPTLLYFHANA-------GNMG--------HRLPIARVFY 102 (300)
T ss_pred CCccccCCCceEEEEEcCcceeEeeeeecccC-------CCceEEEEccCC-------Cccc--------chhhHHHHHH
Confidence 44556668899999999999999999998433 379999999952 1111 11122 2355
Q ss_pred HhCCeEEEEcCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEE
Q 004475 551 LARRFAVLAGPSIPIIGEGDKLPNDRFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGI 630 (751)
Q Consensus 551 ~~~G~~v~~~~~~~~~g~g~~~~~~~~~~~~~~d~~~~v~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v 630 (751)
...+..|+. ..++|||.+.+.. ....+.-|...+++||..++..|..||+++|.|.||.+|+.+|+++.+++.|++
T Consensus 103 ~~l~mnv~i---vsYRGYG~S~Gsp-sE~GL~lDs~avldyl~t~~~~dktkivlfGrSlGGAvai~lask~~~ri~~~i 178 (300)
T KOG4391|consen 103 VNLKMNVLI---VSYRGYGKSEGSP-SEEGLKLDSEAVLDYLMTRPDLDKTKIVLFGRSLGGAVAIHLASKNSDRISAII 178 (300)
T ss_pred HHcCceEEE---EEeeccccCCCCc-cccceeccHHHHHHHHhcCccCCcceEEEEecccCCeeEEEeeccchhheeeee
Confidence 677999998 5677888875543 345667889999999999999999999999999999999999999989999999
Q ss_pred EccCCCCCCC--CccCccc--ccccchhhHHHHHhcCcccccCCCCCCEEEEEcCCCCCCCCChHHHHHHHHHHHhCCCc
Q 004475 631 ARSGSYNKTL--TPFGFQT--EFRTLWEATNVYIEMSPITHANKIKKPILIIHGEVDDKVGLFPMQAERFFDALKGHGAL 706 (751)
Q Consensus 631 ~~~~~~d~~~--~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~P~li~~G~~D~~vp~~~~~~~~~~~~l~~~~~~ 706 (751)
+...+..... .+..++. ..-..|.... .+.....+.+.+.|.|++.|.+|.+|| +.+.+++++......
T Consensus 179 vENTF~SIp~~~i~~v~p~~~k~i~~lc~kn---~~~S~~ki~~~~~P~LFiSGlkDelVP--P~~Mr~Ly~~c~S~~-- 251 (300)
T KOG4391|consen 179 VENTFLSIPHMAIPLVFPFPMKYIPLLCYKN---KWLSYRKIGQCRMPFLFISGLKDELVP--PVMMRQLYELCPSRT-- 251 (300)
T ss_pred eechhccchhhhhheeccchhhHHHHHHHHh---hhcchhhhccccCceEEeecCccccCC--cHHHHHHHHhCchhh--
Confidence 8877654311 1111111 1111121111 122223345678999999999999999 999999999887664
Q ss_pred EEEEEeCCCCCcCCccccHHHHHHHHHHHHHHHhc
Q 004475 707 SRLVLLPFEHHVYAARENVMHVIWETDRWLQKYCL 741 (751)
Q Consensus 707 ~~~~~~~~~~H~~~~~~~~~~~~~~~~~fl~~~l~ 741 (751)
.++..||++.|.-.-. .+.+++.+.+||.+.-.
T Consensus 252 Krl~eFP~gtHNDT~i--~dGYfq~i~dFlaE~~~ 284 (300)
T KOG4391|consen 252 KRLAEFPDGTHNDTWI--CDGYFQAIEDFLAEVVK 284 (300)
T ss_pred hhheeCCCCccCceEE--eccHHHHHHHHHHHhcc
Confidence 4699999999974321 23688899999998765
No 47
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=99.78 E-value=2.4e-17 Score=171.16 Aligned_cols=216 Identities=18% Similarity=0.134 Sum_probs=162.2
Q ss_pred CCceeEEEEEcCCCCeeeccCCCCccccceeeeeEEecCCcEEEEeecCCCCCCCCCCCCCCCCceeeccccccccchhh
Q 004475 59 SCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMT 138 (751)
Q Consensus 59 ~~~~~l~i~~~~~g~~~~lt~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (751)
....+||+.|-++-..+.++.... .+..+.|||||+.|+|.+......
T Consensus 170 ~~~~~l~~~D~dg~~~~~l~~~~~-----~~~~p~ws~~~~~~~y~~f~~~~~--------------------------- 217 (425)
T COG0823 170 PLPYELALGDYDGYNQQKLTDSGS-----LILTPAWSPDGKKLAYVSFELGGC--------------------------- 217 (425)
T ss_pred CCCceEEEEccCCcceeEecccCc-----ceeccccCcCCCceEEEEEecCCC---------------------------
Confidence 466899999988555667765544 256789999999999985532221
Q ss_pred hhccCCccchhhhhhheeeEEEEEcC-CCCceecCCC-ceEEeeeeCCCCceEEEEEecCCcccccccCCCceeEEEEeC
Q 004475 139 DNLLKDEYDESLFDYYTTAQLVLGSL-DGTAKDFGTP-AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTT 216 (751)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~l~~~~~-~G~~~~lt~~-~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~ 216 (751)
.++|++++ +|+..++.+. +.-..++|||||++|+|...... ..+||++|+
T Consensus 218 ------------------~~i~~~~l~~g~~~~i~~~~g~~~~P~fspDG~~l~f~~~rdg----------~~~iy~~dl 269 (425)
T COG0823 218 ------------------PRIYYLDLNTGKRPVILNFNGNNGAPAFSPDGSKLAFSSSRDG----------SPDIYLMDL 269 (425)
T ss_pred ------------------ceEEEEeccCCccceeeccCCccCCccCCCCCCEEEEEECCCC----------CccEEEEcC
Confidence 47999999 6765555554 66778999999999999876642 568999999
Q ss_pred CCceeeeeccCCCCCCCCCccCCccCCCceeeeecCCCceEEEEEeccCCCCccccCcccceeeccCCCCCCCCceEeEe
Q 004475 217 DGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHK 296 (751)
Q Consensus 217 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~spdG~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~ 296 (751)
.++...+|+...+....| +|||||++ |+|++ +...+.+||+++++ ++..+.++.
T Consensus 270 ~~~~~~~Lt~~~gi~~~P-------------s~spdG~~-ivf~S---------dr~G~p~I~~~~~~---g~~~~riT~ 323 (425)
T COG0823 270 DGKNLPRLTNGFGINTSP-------------SWSPDGSK-IVFTS---------DRGGRPQIYLYDLE---GSQVTRLTF 323 (425)
T ss_pred CCCcceecccCCccccCc-------------cCCCCCCE-EEEEe---------CCCCCcceEEECCC---CCceeEeec
Confidence 999888887777665544 99999999 99986 23344599999998 778888888
Q ss_pred eceeEE-EEEecCCceEEEeeeecccceeEEEecCCCCCCcceeeeecccccccCCCCCCCeeeCCCCCEEEEee
Q 004475 297 LDLRFS-VSWCDDSLALVNETWYKTSQTRTWLVCPGSKDVAPRVLFDRVFENVYSDPGSPMMTRTSTGTNVIAKI 370 (751)
Q Consensus 297 ~~~~~~-~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~spDG~~l~~~~ 370 (751)
..+... +.|||||++|+|.... .+...+...++.++ ...+.++.. ... .. ++|+++|+.|.|.+
T Consensus 324 ~~~~~~~p~~SpdG~~i~~~~~~-~g~~~i~~~~~~~~-~~~~~lt~~-~~~-----e~--ps~~~ng~~i~~~s 388 (425)
T COG0823 324 SGGGNSNPVWSPDGDKIVFESSS-GGQWDIDKNDLASG-GKIRILTST-YLN-----ES--PSWAPNGRMIMFSS 388 (425)
T ss_pred cCCCCcCccCCCCCCEEEEEecc-CCceeeEEeccCCC-CcEEEcccc-ccC-----CC--CCcCCCCceEEEec
Confidence 888887 9999999999998822 23366778887775 223444332 221 11 77999999999988
No 48
>PLN02652 hydrolase; alpha/beta fold family protein
Probab=99.78 E-value=4.1e-17 Score=169.87 Aligned_cols=231 Identities=15% Similarity=0.142 Sum_probs=158.1
Q ss_pred eEEEEEEcCCCceEEEEEEcCCCCCCCCCCCccEEEEEcCCCCcCcccCCcccCCCCccCCCCchHHHHHHhCCeEEEEc
Q 004475 481 KEMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAG 560 (751)
Q Consensus 481 ~e~i~~~~~~~~~i~~~~~~P~~~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~v~~~ 560 (751)
.....+...++..+.+..|.|.. ..+.|+||++||.+. ........+..|+++||.|++
T Consensus 110 ~~~~~~~~~~~~~l~~~~~~p~~-----~~~~~~Vl~lHG~~~---------------~~~~~~~~a~~L~~~Gy~V~~- 168 (395)
T PLN02652 110 WATSLFYGARRNALFCRSWAPAA-----GEMRGILIIIHGLNE---------------HSGRYLHFAKQLTSCGFGVYA- 168 (395)
T ss_pred EEEEEEECCCCCEEEEEEecCCC-----CCCceEEEEECCchH---------------HHHHHHHHHHHHHHCCCEEEE-
Confidence 45566777777889999999864 224689999999531 011112456678889999999
Q ss_pred CCCCCCCCCCCCCCc---hhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCC---ceeEEEEccC
Q 004475 561 PSIPIIGEGDKLPND---RFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPH---LFCCGIARSG 634 (751)
Q Consensus 561 ~~~~~~g~g~~~~~~---~~~~~~~~d~~~~v~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~p~---~~~~~v~~~~ 634 (751)
++.+|+|.+.... ...+...+|+..+++++.... +..+++++||||||.+++.++. +|+ +++++|+.+|
T Consensus 169 --~D~rGhG~S~~~~~~~~~~~~~~~Dl~~~l~~l~~~~--~~~~i~lvGhSmGG~ial~~a~-~p~~~~~v~glVL~sP 243 (395)
T PLN02652 169 --MDWIGHGGSDGLHGYVPSLDYVVEDTEAFLEKIRSEN--PGVPCFLFGHSTGGAVVLKAAS-YPSIEDKLEGIVLTSP 243 (395)
T ss_pred --eCCCCCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhC--CCCCEEEEEECHHHHHHHHHHh-ccCcccccceEEEECc
Confidence 6677887765432 234566889999999997652 2347999999999999987664 554 7899999998
Q ss_pred CCCCCCCc----------------cCcccc--c-ccchhhHH----HH------------------Hhc-C-cccccCCC
Q 004475 635 SYNKTLTP----------------FGFQTE--F-RTLWEATN----VY------------------IEM-S-PITHANKI 671 (751)
Q Consensus 635 ~~d~~~~~----------------~~~~~~--~-~~~~~~~~----~~------------------~~~-~-~~~~~~~~ 671 (751)
........ +.+... . .....++. .+ ... . ....+.++
T Consensus 244 ~l~~~~~~~~~~~~~~l~~~~~p~~~~~~~~~~~~~~s~~~~~~~~~~~dp~~~~g~i~~~~~~~~~~~~~~l~~~L~~I 323 (395)
T PLN02652 244 ALRVKPAHPIVGAVAPIFSLVAPRFQFKGANKRGIPVSRDPAALLAKYSDPLVYTGPIRVRTGHEILRISSYLTRNFKSV 323 (395)
T ss_pred ccccccchHHHHHHHHHHHHhCCCCcccCcccccCCcCCCHHHHHHHhcCCCcccCCchHHHHHHHHHHHHHHHhhcccC
Confidence 75422100 000000 0 00000000 00 000 0 12345678
Q ss_pred CCCEEEEEcCCCCCCCCChHHHHHHHHHHHhCCCcEEEEEeCCCCCcCCccccHHHHHHHHHHHHHHHhc
Q 004475 672 KKPILIIHGEVDDKVGLFPMQAERFFDALKGHGALSRLVLLPFEHHVYAARENVMHVIWETDRWLQKYCL 741 (751)
Q Consensus 672 ~~P~li~~G~~D~~vp~~~~~~~~~~~~l~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~fl~~~l~ 741 (751)
++|+|++||++|.++| +..++++++.+... ..+++++++++|.....+..+++++.+.+||..++.
T Consensus 324 ~vPvLIi~G~~D~vvp--~~~a~~l~~~~~~~--~k~l~~~~ga~H~l~~e~~~e~v~~~I~~FL~~~~~ 389 (395)
T PLN02652 324 TVPFMVLHGTADRVTD--PLASQDLYNEAASR--HKDIKLYDGFLHDLLFEPEREEVGRDIIDWMEKRLD 389 (395)
T ss_pred CCCEEEEEeCCCCCCC--HHHHHHHHHhcCCC--CceEEEECCCeEEeccCCCHHHHHHHHHHHHHHHhh
Confidence 9999999999999999 99999998876543 457889999999987666788999999999999875
No 49
>PRK10162 acetyl esterase; Provisional
Probab=99.78 E-value=2.6e-17 Score=167.82 Aligned_cols=232 Identities=14% Similarity=0.098 Sum_probs=156.6
Q ss_pred CceEEEEEEcCCCceEEEEEEcCCCCCCCCCCCccEEEEEcCCCCcCcccCCcccCCCCccCCCCchHHHHHHh-CCeEE
Q 004475 479 LQKEMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLA-RRFAV 557 (751)
Q Consensus 479 ~~~e~i~~~~~~~~~i~~~~~~P~~~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~G~~v 557 (751)
+..+.+.++..+| .+.+.+|.|.. . ..|+||++|||||..++ ...+ ...+..|+. .|+.|
T Consensus 55 ~~~~~~~i~~~~g-~i~~~~y~P~~-----~-~~p~vv~~HGGg~~~g~--------~~~~----~~~~~~la~~~g~~V 115 (318)
T PRK10162 55 MATRAYMVPTPYG-QVETRLYYPQP-----D-SQATLFYLHGGGFILGN--------LDTH----DRIMRLLASYSGCTV 115 (318)
T ss_pred ceEEEEEEecCCC-ceEEEEECCCC-----C-CCCEEEEEeCCcccCCC--------chhh----hHHHHHHHHHcCCEE
Confidence 3477788887666 59999999953 1 26999999999875432 2222 134556666 59999
Q ss_pred EEcCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHHHHc---CCCCCCcEEEEEeChHHHHHHHHHHhC------CCceeE
Q 004475 558 LAGPSIPIIGEGDKLPNDRFVEQLVSSAEAAVEEVVRR---GVADPSRIAVGGHSYGAFMTAHLLAHA------PHLFCC 628 (751)
Q Consensus 558 ~~~~~~~~~g~g~~~~~~~~~~~~~~d~~~~v~~l~~~---~~id~~~i~l~G~S~GG~~a~~~a~~~------p~~~~~ 628 (751)
+.++|+....+ ......+|+.++++|+.++ ..+|++||+|+|+|+||++|+.++.+. +..+++
T Consensus 116 v~vdYrlape~--------~~p~~~~D~~~a~~~l~~~~~~~~~d~~~i~l~G~SaGG~la~~~a~~~~~~~~~~~~~~~ 187 (318)
T PRK10162 116 IGIDYTLSPEA--------RFPQAIEEIVAVCCYFHQHAEDYGINMSRIGFAGDSAGAMLALASALWLRDKQIDCGKVAG 187 (318)
T ss_pred EEecCCCCCCC--------CCCCcHHHHHHHHHHHHHhHHHhCCChhHEEEEEECHHHHHHHHHHHHHHhcCCCccChhh
Confidence 99777533221 1233578888999999764 347889999999999999999998753 356889
Q ss_pred EEEccCCCCCCCCccCccccccc-ch--hhHHHHH---------hcCcccc--cCCC---CCCEEEEEcCCCCCCCCChH
Q 004475 629 GIARSGSYNKTLTPFGFQTEFRT-LW--EATNVYI---------EMSPITH--ANKI---KKPILIIHGEVDDKVGLFPM 691 (751)
Q Consensus 629 ~v~~~~~~d~~~~~~~~~~~~~~-~~--~~~~~~~---------~~~~~~~--~~~~---~~P~li~~G~~D~~vp~~~~ 691 (751)
+++++|.++.............. .+ ...+.+. ..+|... ...+ -+|+||++|+.|++. .
T Consensus 188 ~vl~~p~~~~~~~~s~~~~~~~~~~l~~~~~~~~~~~y~~~~~~~~~p~~~p~~~~l~~~lPp~~i~~g~~D~L~----d 263 (318)
T PRK10162 188 VLLWYGLYGLRDSVSRRLLGGVWDGLTQQDLQMYEEAYLSNDADRESPYYCLFNNDLTRDVPPCFIAGAEFDPLL----D 263 (318)
T ss_pred eEEECCccCCCCChhHHHhCCCccccCHHHHHHHHHHhCCCccccCCcccCcchhhhhcCCCCeEEEecCCCcCc----C
Confidence 99999987743211000000000 00 0111111 1112111 1222 379999999999984 5
Q ss_pred HHHHHHHHHHhCCCcEEEEEeCCCCCcCCcc----ccHHHHHHHHHHHHHHHhc
Q 004475 692 QAERFFDALKGHGALSRLVLLPFEHHVYAAR----ENVMHVIWETDRWLQKYCL 741 (751)
Q Consensus 692 ~~~~~~~~l~~~~~~~~~~~~~~~~H~~~~~----~~~~~~~~~~~~fl~~~l~ 741 (751)
+++.+.++|+++|++++++++++..|+|... +...+.++.+.+||.++++
T Consensus 264 e~~~~~~~L~~aGv~v~~~~~~g~~H~f~~~~~~~~~a~~~~~~~~~~l~~~~~ 317 (318)
T PRK10162 264 DSRLLYQTLAAHQQPCEFKLYPGTLHAFLHYSRMMDTADDALRDGAQFFTAQLK 317 (318)
T ss_pred hHHHHHHHHHHcCCCEEEEEECCCceehhhccCchHHHHHHHHHHHHHHHHHhc
Confidence 7889999999999999999999999998543 2345678889999998864
No 50
>KOG1552 consensus Predicted alpha/beta hydrolase [General function prediction only]
Probab=99.77 E-value=1e-17 Score=154.34 Aligned_cols=221 Identities=20% Similarity=0.189 Sum_probs=160.1
Q ss_pred ceEEEEEEcCCCceEEEEEEcCCCCCCCCCCCccEEEEEcCCCCcCcccCCcccCCCCccCCCCchHHHHHHh-CCeEEE
Q 004475 480 QKEMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLA-RRFAVL 558 (751)
Q Consensus 480 ~~e~i~~~~~~~~~i~~~~~~P~~~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~G~~v~ 558 (751)
..+-+..+++.|..+.+..+.|+.. ..++++|+||.. .+ .+ ....+...+.. .++.|+
T Consensus 34 ~v~v~~~~t~rgn~~~~~y~~~~~~------~~~~lly~hGNa---~D-----lg-------q~~~~~~~l~~~ln~nv~ 92 (258)
T KOG1552|consen 34 FVEVFKVKTSRGNEIVCMYVRPPEA------AHPTLLYSHGNA---AD-----LG-------QMVELFKELSIFLNCNVV 92 (258)
T ss_pred ccceEEeecCCCCEEEEEEEcCccc------cceEEEEcCCcc---cc-----hH-------HHHHHHHHHhhcccceEE
Confidence 4566667777888999999998762 358999999941 00 00 00112223333 489999
Q ss_pred EcCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEccCCCCC
Q 004475 559 AGPSIPIIGEGDKLPNDRFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGSYNK 638 (751)
Q Consensus 559 ~~~~~~~~g~g~~~~~~~~~~~~~~d~~~~v~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~~d~ 638 (751)
. ++++|+|.+.+.. ....+.+|+.++++||++... ..++|+|+|+|+|...++.+|++.| +.++|+.+|+.+-
T Consensus 93 ~---~DYSGyG~S~G~p-sE~n~y~Di~avye~Lr~~~g-~~~~Iil~G~SiGt~~tv~Lasr~~--~~alVL~SPf~S~ 165 (258)
T KOG1552|consen 93 S---YDYSGYGRSSGKP-SERNLYADIKAVYEWLRNRYG-SPERIILYGQSIGTVPTVDLASRYP--LAAVVLHSPFTSG 165 (258)
T ss_pred E---EecccccccCCCc-ccccchhhHHHHHHHHHhhcC-CCceEEEEEecCCchhhhhHhhcCC--cceEEEeccchhh
Confidence 9 7888998875543 234778999999999999876 6789999999999999999999997 8999999998763
Q ss_pred CCCccCcccccccchhhHHHHHhcCcccccCCCCCCEEEEEcCCCCCCCCChHHHHHHHHHHHhCCCcEEEEEeCCCCCc
Q 004475 639 TLTPFGFQTEFRTLWEATNVYIEMSPITHANKIKKPILIIHGEVDDKVGLFPMQAERFFDALKGHGALSRLVLLPFEHHV 718 (751)
Q Consensus 639 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~li~~G~~D~~vp~~~~~~~~~~~~l~~~~~~~~~~~~~~~~H~ 718 (751)
..... .......|. ..+..+..+..+++|+|++||+.|.++| ..+..+++++.+.+ ++..+..|++|.
T Consensus 166 ~rv~~--~~~~~~~~~-----d~f~~i~kI~~i~~PVLiiHgtdDevv~--~sHg~~Lye~~k~~---~epl~v~g~gH~ 233 (258)
T KOG1552|consen 166 MRVAF--PDTKTTYCF-----DAFPNIEKISKITCPVLIIHGTDDEVVD--FSHGKALYERCKEK---VEPLWVKGAGHN 233 (258)
T ss_pred hhhhc--cCcceEEee-----ccccccCcceeccCCEEEEecccCceec--ccccHHHHHhcccc---CCCcEEecCCCc
Confidence 22111 111111221 1122255677789999999999999999 99999999998754 567788899997
Q ss_pred CCccccHHHHHHHHHHHHHHHhcC
Q 004475 719 YAARENVMHVIWETDRWLQKYCLS 742 (751)
Q Consensus 719 ~~~~~~~~~~~~~~~~fl~~~l~~ 742 (751)
.. +...+++..+..|+......
T Consensus 234 ~~--~~~~~yi~~l~~f~~~~~~~ 255 (258)
T KOG1552|consen 234 DI--ELYPEYIEHLRRFISSVLPS 255 (258)
T ss_pred cc--ccCHHHHHHHHHHHHHhccc
Confidence 63 33447888888888876653
No 51
>COG1647 Esterase/lipase [General function prediction only]
Probab=99.77 E-value=7.3e-18 Score=149.99 Aligned_cols=198 Identities=18% Similarity=0.161 Sum_probs=145.5
Q ss_pred cEEEEEcCCCCcCcccCCcccCCCCccCCCCchHHHHHHhCCeEEEEcCCCCCCCCCCCC--CCchhHHHHHHHHHHHHH
Q 004475 513 PCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGPSIPIIGEGDKL--PNDRFVEQLVSSAEAAVE 590 (751)
Q Consensus 513 P~vv~~HGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~v~~~~~~~~~g~g~~~--~~~~~~~~~~~d~~~~v~ 590 (751)
.+|+++|| +.|++..+. .+..+|.++||.|.+ +.++|+|... .-.....++++|+.++++
T Consensus 16 ~AVLllHG-----------FTGt~~Dvr----~Lgr~L~e~GyTv~a---P~ypGHG~~~e~fl~t~~~DW~~~v~d~Y~ 77 (243)
T COG1647 16 RAVLLLHG-----------FTGTPRDVR----MLGRYLNENGYTVYA---PRYPGHGTLPEDFLKTTPRDWWEDVEDGYR 77 (243)
T ss_pred EEEEEEec-----------cCCCcHHHH----HHHHHHHHCCceEec---CCCCCCCCCHHHHhcCCHHHHHHHHHHHHH
Confidence 78999999 455555554 456788899999999 4456776642 122335688999999999
Q ss_pred HHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEccCCCCCCCCccCcc----------c-cc----------
Q 004475 591 EVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGSYNKTLTPFGFQ----------T-EF---------- 649 (751)
Q Consensus 591 ~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~~d~~~~~~~~~----------~-~~---------- 649 (751)
+|.+.+. +.|++.|.||||.+|+.+|.+.| ++++|.+|+.++.......+. . +.
T Consensus 78 ~L~~~gy---~eI~v~GlSmGGv~alkla~~~p--~K~iv~m~a~~~~k~~~~iie~~l~y~~~~kk~e~k~~e~~~~e~ 152 (243)
T COG1647 78 DLKEAGY---DEIAVVGLSMGGVFALKLAYHYP--PKKIVPMCAPVNVKSWRIIIEGLLEYFRNAKKYEGKDQEQIDKEM 152 (243)
T ss_pred HHHHcCC---CeEEEEeecchhHHHHHHHhhCC--ccceeeecCCcccccchhhhHHHHHHHHHhhhccCCCHHHHHHHH
Confidence 9998764 68999999999999999999997 788998888765221110000 0 00
Q ss_pred ----ccchhhHHHHHhc--CcccccCCCCCCEEEEEcCCCCCCCCChHHHHHHHHHHHhCCCcEEEEEeCCCCCcCCccc
Q 004475 650 ----RTLWEATNVYIEM--SPITHANKIKKPILIIHGEVDDKVGLFPMQAERFFDALKGHGALSRLVLLPFEHHVYAARE 723 (751)
Q Consensus 650 ----~~~~~~~~~~~~~--~~~~~~~~~~~P~li~~G~~D~~vp~~~~~~~~~~~~l~~~~~~~~~~~~~~~~H~~~~~~ 723 (751)
..++.....+... .....+++|..|+|+++|.+|+.|| .+.+.-+++.+... +.++.+|.+.||.+....
T Consensus 153 ~~~~~~~~~~~~~~~~~i~~~~~~~~~I~~pt~vvq~~~D~mv~--~~sA~~Iy~~v~s~--~KeL~~~e~SgHVIt~D~ 228 (243)
T COG1647 153 KSYKDTPMTTTAQLKKLIKDARRSLDKIYSPTLVVQGRQDEMVP--AESANFIYDHVESD--DKELKWLEGSGHVITLDK 228 (243)
T ss_pred HHhhcchHHHHHHHHHHHHHHHhhhhhcccchhheecccCCCCC--HHHHHHHHHhccCC--cceeEEEccCCceeecch
Confidence 0011111111111 1234578899999999999999999 89998899887654 568999999999999888
Q ss_pred cHHHHHHHHHHHHH
Q 004475 724 NVMHVIWETDRWLQ 737 (751)
Q Consensus 724 ~~~~~~~~~~~fl~ 737 (751)
..+++.+.++.||+
T Consensus 229 Erd~v~e~V~~FL~ 242 (243)
T COG1647 229 ERDQVEEDVITFLE 242 (243)
T ss_pred hHHHHHHHHHHHhh
Confidence 88999999999996
No 52
>COG3458 Acetyl esterase (deacetylase) [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.76 E-value=9.9e-18 Score=153.29 Aligned_cols=232 Identities=17% Similarity=0.167 Sum_probs=157.5
Q ss_pred cCCceEEEEEEcCCCceEEEEEEcCCCCCCCCCCCccEEEEEcCCCCcCcccCCcccCCCCccCCCCchHHHHHHhCCeE
Q 004475 477 ASLQKEMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFA 556 (751)
Q Consensus 477 ~~~~~e~i~~~~~~~~~i~~~~~~P~~~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~ 556 (751)
+..++-.++|++.+|.+|.||+.+|... +++.|+||.+||.+.+. ..+. -...++..||+
T Consensus 52 ~~ve~ydvTf~g~~g~rI~gwlvlP~~~----~~~~P~vV~fhGY~g~~-----------g~~~-----~~l~wa~~Gya 111 (321)
T COG3458 52 PRVEVYDVTFTGYGGARIKGWLVLPRHE----KGKLPAVVQFHGYGGRG-----------GEWH-----DMLHWAVAGYA 111 (321)
T ss_pred CceEEEEEEEeccCCceEEEEEEeeccc----CCccceEEEEeeccCCC-----------CCcc-----cccccccccee
Confidence 3456778999999999999999999762 36799999999974211 1111 12345788999
Q ss_pred EEEcCCCCCCCCCC----CC----------------CCchhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHH
Q 004475 557 VLAGPSIPIIGEGD----KL----------------PNDRFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTA 616 (751)
Q Consensus 557 v~~~~~~~~~g~g~----~~----------------~~~~~~~~~~~d~~~~v~~l~~~~~id~~~i~l~G~S~GG~~a~ 616 (751)
|+..+.++..+... .. ....++.....|+.++++.+.+...+|..||++.|.|+||.+++
T Consensus 112 vf~MdvRGQg~~~~dt~~~p~~~s~pG~mtrGilD~kd~yyyr~v~~D~~~ave~~~sl~~vde~Ri~v~G~SqGGglal 191 (321)
T COG3458 112 VFVMDVRGQGSSSQDTADPPGGPSDPGFMTRGILDRKDTYYYRGVFLDAVRAVEILASLDEVDEERIGVTGGSQGGGLAL 191 (321)
T ss_pred EEEEecccCCCccccCCCCCCCCcCCceeEeecccCCCceEEeeehHHHHHHHHHHhccCccchhheEEeccccCchhhh
Confidence 99944443332211 00 11122345688999999999999999999999999999999999
Q ss_pred HHHHhCCCceeEEEEccCCCCCCCCccCcccccccchh------------hHHHHHh---cCcccccCCCCCCEEEEEcC
Q 004475 617 HLLAHAPHLFCCGIARSGSYNKTLTPFGFQTEFRTLWE------------ATNVYIE---MSPITHANKIKKPILIIHGE 681 (751)
Q Consensus 617 ~~a~~~p~~~~~~v~~~~~~d~~~~~~~~~~~~~~~~~------------~~~~~~~---~~~~~~~~~~~~P~li~~G~ 681 (751)
.+++.. .+++++++..|........+.... ..++. ..+.+.. .+....+..+|.|+|+..|.
T Consensus 192 aaaal~-~rik~~~~~~Pfl~df~r~i~~~~--~~~ydei~~y~k~h~~~e~~v~~TL~yfD~~n~A~RiK~pvL~svgL 268 (321)
T COG3458 192 AAAALD-PRIKAVVADYPFLSDFPRAIELAT--EGPYDEIQTYFKRHDPKEAEVFETLSYFDIVNLAARIKVPVLMSVGL 268 (321)
T ss_pred hhhhcC-hhhhcccccccccccchhheeecc--cCcHHHHHHHHHhcCchHHHHHHHHhhhhhhhHHHhhccceEEeecc
Confidence 999999 478999999997542211111110 01110 0111111 12233456789999999999
Q ss_pred CCCCCCCChHHHHHHHHHHHhCCCcEEEEEeCCCCCcCCccccHHHHHHHHHHHHHHHh
Q 004475 682 VDDKVGLFPMQAERFFDALKGHGALSRLVLLPFEHHVYAARENVMHVIWETDRWLQKYC 740 (751)
Q Consensus 682 ~D~~vp~~~~~~~~~~~~l~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~fl~~~l 740 (751)
.|++|| +.-...+++++.. +.++.+||.-+|.... ....+++..|+....
T Consensus 269 ~D~vcp--PstqFA~yN~l~~---~K~i~iy~~~aHe~~p----~~~~~~~~~~l~~l~ 318 (321)
T COG3458 269 MDPVCP--PSTQFAAYNALTT---SKTIEIYPYFAHEGGP----GFQSRQQVHFLKILF 318 (321)
T ss_pred cCCCCC--ChhhHHHhhcccC---CceEEEeeccccccCc----chhHHHHHHHHHhhc
Confidence 999998 8888888888764 3578888888897542 123345677776543
No 53
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=99.75 E-value=2.5e-15 Score=148.62 Aligned_cols=342 Identities=11% Similarity=0.092 Sum_probs=172.7
Q ss_pred CCcccccCCCCc---ccccceeecCCCCeEEEEEeecccccccCCceeEEEEEcCCCCeeeccCCCCccccceeeeeEEe
Q 004475 19 GPEKEVHGYPDG---AKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWV 95 (751)
Q Consensus 19 g~~~~l~~~~~~---~~~~~p~~SPDG~~iaf~~~~~~~~~~~~~~~~l~i~~~~~g~~~~lt~~~~~~~~~~~~~~~ws 95 (751)
-+.++||..+.. ....++.|.+||++|+|.+.+ ++..+||++|+++++.+|||.++... .....+|
T Consensus 21 ~~VtrLT~~~~~~h~~YF~~~~ft~dG~kllF~s~~-------dg~~nly~lDL~t~~i~QLTdg~g~~----~~g~~~s 89 (386)
T PF14583_consen 21 HRVTRLTPPDGHSHRLYFYQNCFTDDGRKLLFASDF-------DGNRNLYLLDLATGEITQLTDGPGDN----TFGGFLS 89 (386)
T ss_dssp -EEEE-S-TTS-EE---TTS--B-TTS-EEEEEE-T-------TSS-EEEEEETTT-EEEE---SS-B-----TTT-EE-
T ss_pred ceEEEecCCCCcccceeecCCCcCCCCCEEEEEecc-------CCCcceEEEEcccCEEEECccCCCCC----ccceEEe
Confidence 345566643221 156789999999999997643 67799999999999999999987532 1245889
Q ss_pred cCCcEEEEeecCCCCCCCCCCCCCCCCceeeccccccccchhhhhccCCccchhhhhhheeeEEEEEcC-CCCceecCCC
Q 004475 96 NNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DGTAKDFGTP 174 (751)
Q Consensus 96 pDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~G~~~~lt~~ 174 (751)
|+++.|+|.... ..|+.+|+ +++.+.|..-
T Consensus 90 ~~~~~~~Yv~~~-------------------------------------------------~~l~~vdL~T~e~~~vy~~ 120 (386)
T PF14583_consen 90 PDDRALYYVKNG-------------------------------------------------RSLRRVDLDTLEERVVYEV 120 (386)
T ss_dssp TTSSEEEEEETT-------------------------------------------------TEEEEEETTT--EEEEEE-
T ss_pred cCCCeEEEEECC-------------------------------------------------CeEEEEECCcCcEEEEEEC
Confidence 999999886211 47899999 6666555332
Q ss_pred --ceEEeeee--CCCCceEEEEEecCCcccccc-c--------CCCceeEEEEeCCCceeeeeccCCCCCCCCCccCCcc
Q 004475 175 --AVYTAVEP--SPDQKYVLITSMHRPYSYKVP-C--------ARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVR 241 (751)
Q Consensus 175 --~~~~~~~~--SpDG~~i~~~~~~~~~~~~~~-~--------~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~ 241 (751)
.......| ..|++.++.....+....... . ..-...|+.+|+.+++.+.+.....
T Consensus 121 p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~~~v~~~~~------------ 188 (386)
T PF14583_consen 121 PDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGERKVVFEDTD------------ 188 (386)
T ss_dssp -TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--EEEEEEESS------------
T ss_pred CcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCceeEEEecCc------------
Confidence 33333444 567888776654432111000 0 1113679999999998887644321
Q ss_pred CCCceeeeecCCCceEEEEEeccCCCCccccCcccceeeccCCCCCCCCceEeEee-ce-eEE-EEEecCCceEEEeeee
Q 004475 242 EGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKL-DL-RFS-VSWCDDSLALVNETWY 318 (751)
Q Consensus 242 ~~~~~~~~spdG~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~-~~-~~~-~~~spdg~~l~~~~~~ 318 (751)
-+..+.+||.-..+|+|+-.. ... .+ ..+|++++.+ ++..+.+... .+ .+. --|+|||..|+|..-.
T Consensus 189 -wlgH~~fsP~dp~li~fCHEG--pw~--~V--d~RiW~i~~d---g~~~~~v~~~~~~e~~gHEfw~~DG~~i~y~~~~ 258 (386)
T PF14583_consen 189 -WLGHVQFSPTDPTLIMFCHEG--PWD--LV--DQRIWTINTD---GSNVKKVHRRMEGESVGHEFWVPDGSTIWYDSYT 258 (386)
T ss_dssp --EEEEEEETTEEEEEEEEE-S---TT--TS--S-SEEEEETT---S---EESS---TTEEEEEEEE-TTSS-EEEEEEE
T ss_pred -cccCcccCCCCCCEEEEeccC--Ccc--ee--ceEEEEEEcC---CCcceeeecCCCCcccccccccCCCCEEEEEeec
Confidence 134779999998889997521 111 11 1378999986 6566665433 22 233 7899999999997642
Q ss_pred c-ccceeEEEecCCCCCCcceeeeecccccccCCCCCCCeeeCCCCCEEEEeeeecCCcceEEEEccCCCCCCCCCceeE
Q 004475 319 K-TSQTRTWLVCPGSKDVAPRVLFDRVFENVYSDPGSPMMTRTSTGTNVIAKIKKENDEQIYILLNGRGFTPEGNIPFLD 397 (751)
Q Consensus 319 ~-~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~spDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 397 (751)
. ....-|..++++++ +.+.+...+.. .. +.-|+||+.++=-.-+ ..... -..++.. -...+.|+
T Consensus 259 ~~~~~~~i~~~d~~t~--~~~~~~~~p~~--~H------~~ss~Dg~L~vGDG~d--~p~~v--~~~~~~~-~~~~p~i~ 323 (386)
T PF14583_consen 259 PGGQDFWIAGYDPDTG--ERRRLMEMPWC--SH------FMSSPDGKLFVGDGGD--APVDV--ADAGGYK-IENDPWIY 323 (386)
T ss_dssp TTT--EEEEEE-TTT----EEEEEEE-SE--EE------EEE-TTSSEEEEEE------------------------EEE
T ss_pred CCCCceEEEeeCCCCC--CceEEEeCCce--ee------eEEcCCCCEEEecCCC--CCccc--cccccce-ecCCcEEE
Confidence 2 23446788888885 33444433221 11 5578999865432211 00000 0000111 02345899
Q ss_pred EEecCCCceeEEeeccch-hhhhceeeeecCCcceeeccCCCEEEEEEecCCCCCeEEEEEcCC
Q 004475 398 LFDINTGSKERIWESNRE-KYFETAVALVFGQGEEDINLNQLKILTSKESKTEITQYHILSWPL 460 (751)
Q Consensus 398 ~~d~~~g~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~l~~~~~~~ 460 (751)
+++++++....|...... ....+-.. ....-++|||||++++|+. +...++.||.+++..
T Consensus 324 ~~~~~~~~~~~l~~h~~sw~v~~~~~q--~~hPhp~FSPDgk~VlF~S-d~~G~~~vY~v~i~~ 384 (386)
T PF14583_consen 324 LFDVEAGRFRKLARHDTSWKVLDGDRQ--VTHPHPSFSPDGKWVLFRS-DMEGPPAVYLVEIPD 384 (386)
T ss_dssp EEETTTTEEEEEEE-------BTTBSS--TT----EE-TTSSEEEEEE--TTSS-EEEEEE--C
T ss_pred EeccccCceeeeeeccCcceeecCCCc--cCCCCCccCCCCCEEEEEC-CCCCCccEEEEeCcc
Confidence 999998887777554321 00000000 0122379999999999995 567789999998753
No 54
>PRK11460 putative hydrolase; Provisional
Probab=99.74 E-value=2.2e-16 Score=153.02 Aligned_cols=127 Identities=21% Similarity=0.146 Sum_probs=102.5
Q ss_pred HHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEccCCCCCCCCccCcccccccchhhHHHHHh
Q 004475 582 VSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGSYNKTLTPFGFQTEFRTLWEATNVYIE 661 (751)
Q Consensus 582 ~~d~~~~v~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 661 (751)
.+.+.+.++++.++..+++++|+++|||+||.+++.++..+|+.+.+++++++.+... .
T Consensus 84 ~~~l~~~i~~~~~~~~~~~~~i~l~GfS~Gg~~al~~a~~~~~~~~~vv~~sg~~~~~------~--------------- 142 (232)
T PRK11460 84 MPTFIETVRYWQQQSGVGASATALIGFSQGAIMALEAVKAEPGLAGRVIAFSGRYASL------P--------------- 142 (232)
T ss_pred HHHHHHHHHHHHHhcCCChhhEEEEEECHHHHHHHHHHHhCCCcceEEEEeccccccc------c---------------
Confidence 4455667777777777888999999999999999999999988888888887743200 0
Q ss_pred cCcccccCCCCCCEEEEEcCCCCCCCCChHHHHHHHHHHHhCCCcEEEEEeCCCCCcCCccccHHHHHHHHHHHHHHHhc
Q 004475 662 MSPITHANKIKKPILIIHGEVDDKVGLFPMQAERFFDALKGHGALSRLVLLPFEHHVYAARENVMHVIWETDRWLQKYCL 741 (751)
Q Consensus 662 ~~~~~~~~~~~~P~li~~G~~D~~vp~~~~~~~~~~~~l~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~fl~~~l~ 741 (751)
.....++|+|++||+.|++|| +..++++++.|++.+.++++++||+++|.+.. +.+..+.+||.+.+.
T Consensus 143 -----~~~~~~~pvli~hG~~D~vvp--~~~~~~~~~~L~~~g~~~~~~~~~~~gH~i~~-----~~~~~~~~~l~~~l~ 210 (232)
T PRK11460 143 -----ETAPTATTIHLIHGGEDPVID--VAHAVAAQEALISLGGDVTLDIVEDLGHAIDP-----RLMQFALDRLRYTVP 210 (232)
T ss_pred -----ccccCCCcEEEEecCCCCccC--HHHHHHHHHHHHHCCCCeEEEEECCCCCCCCH-----HHHHHHHHHHHHHcc
Confidence 011246899999999999999 99999999999999999999999999999863 566677777777663
No 55
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=99.70 E-value=1.2e-14 Score=142.03 Aligned_cols=251 Identities=12% Similarity=0.073 Sum_probs=178.8
Q ss_pred CcceeEEeecCCCCCCCCcccccCCCCcccccce-eecCCCCeEEEEEeecccccccCCceeEEEEEcCCCCeeeccCC-
Q 004475 3 FFTGIGIHRLLPDDSLGPEKEVHGYPDGAKINFV-SWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFES- 80 (751)
Q Consensus 3 ~~~~~~~~~~~~~~~~g~~~~l~~~~~~~~~~~p-~~SPDG~~iaf~~~~~~~~~~~~~~~~l~i~~~~~g~~~~lt~~- 80 (751)
.+.|||-.||++ ...|+.|+..+ ..| ..+-||++|+| ...++||+.|+++...+.|--+
T Consensus 246 G~GnlYSvdldG----kDlrrHTnFtd----YY~R~~nsDGkrIvF-----------q~~GdIylydP~td~lekldI~l 306 (668)
T COG4946 246 GVGNLYSVDLDG----KDLRRHTNFTD----YYPRNANSDGKRIVF-----------QNAGDIYLYDPETDSLEKLDIGL 306 (668)
T ss_pred CccceEEeccCC----chhhhcCCchh----ccccccCCCCcEEEE-----------ecCCcEEEeCCCcCcceeeecCC
Confidence 356999999999 88999986543 233 37899999999 5668999999998776666322
Q ss_pred CCc---cccceee---ee-EEe-cCCcEEEEeecCCCCCCCCCCCCCCCCceeeccccccccchhhhhccCCccchhhhh
Q 004475 81 PDI---CLNAVFG---SF-VWV-NNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFD 152 (751)
Q Consensus 81 ~~~---~~~~~~~---~~-~ws-pDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (751)
+-. ...-.+. -+ .+| .+|.+|++.+.
T Consensus 307 pl~rk~k~~k~~~pskyledfa~~~Gd~ia~VSR---------------------------------------------- 340 (668)
T COG4946 307 PLDRKKKQPKFVNPSKYLEDFAVVNGDYIALVSR---------------------------------------------- 340 (668)
T ss_pred ccccccccccccCHHHhhhhhccCCCcEEEEEec----------------------------------------------
Confidence 110 0000000 01 144 36788887743
Q ss_pred hheeeEEEEEcC-CCCceecCCCceEEeeeeCCCCceEEEEEecCCcccccccCCCceeEEEEeCCCceeeeeccCCCCC
Q 004475 153 YYTTAQLVLGSL-DGTAKDFGTPAVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAE 231 (751)
Q Consensus 153 ~~~~~~l~~~~~-~G~~~~lt~~~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~ 231 (751)
++.++++. .|-..++...+.+....++-|++.+++...+. ..|-+++.+|++.+++...-
T Consensus 341 ----GkaFi~~~~~~~~iqv~~~~~VrY~r~~~~~e~~vigt~dg------------D~l~iyd~~~~e~kr~e~~l--- 401 (668)
T COG4946 341 ----GKAFIMRPWDGYSIQVGKKGGVRYRRIQVDPEGDVIGTNDG------------DKLGIYDKDGGEVKRIEKDL--- 401 (668)
T ss_pred ----CcEEEECCCCCeeEEcCCCCceEEEEEccCCcceEEeccCC------------ceEEEEecCCceEEEeeCCc---
Confidence 57888888 66777787777788888888998776654432 25779999999877663332
Q ss_pred CCCCccCCccCCCceeeeecCCCceEEEEEeccCCCCccccCcccceeeccCCCCCCCCceEeEeece-eEE-EEEecCC
Q 004475 232 DIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDL-RFS-VSWCDDS 309 (751)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~spdG~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~-~~~-~~~spdg 309 (751)
..+-.+..||||++ ++.++ .+.+|++++++ .+.++.+..... -+. +.|+|++
T Consensus 402 ----------g~I~av~vs~dGK~-~vvaN------------dr~el~vidid---ngnv~~idkS~~~lItdf~~~~ns 455 (668)
T COG4946 402 ----------GNIEAVKVSPDGKK-VVVAN------------DRFELWVIDID---NGNVRLIDKSEYGLITDFDWHPNS 455 (668)
T ss_pred ----------cceEEEEEcCCCcE-EEEEc------------CceEEEEEEec---CCCeeEecccccceeEEEEEcCCc
Confidence 22447899999999 67654 56799999997 667777776544 455 9999999
Q ss_pred ceEEEeeeecccceeEEEecCCCCCCcceeeeecccccccCCCCCCCeeeCCCCCEEEEeeee
Q 004475 310 LALVNETWYKTSQTRTWLVCPGSKDVAPRVLFDRVFENVYSDPGSPMMTRTSTGTNVIAKIKK 372 (751)
Q Consensus 310 ~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~spDG~~l~~~~~~ 372 (751)
++|+|+-...-..+.|-+++++++ +.-.+|.....+. . |+|.|||++|+|.+.+
T Consensus 456 r~iAYafP~gy~tq~Iklydm~~~--Kiy~vTT~ta~Df-----s--PaFD~d~ryLYfLs~R 509 (668)
T COG4946 456 RWIAYAFPEGYYTQSIKLYDMDGG--KIYDVTTPTAYDF-----S--PAFDPDGRYLYFLSAR 509 (668)
T ss_pred eeEEEecCcceeeeeEEEEecCCC--eEEEecCCccccc-----C--cccCCCCcEEEEEecc
Confidence 999998764435568888999884 4455555544432 2 7799999999999975
No 56
>COG2267 PldB Lysophospholipase [Lipid metabolism]
Probab=99.70 E-value=2.4e-15 Score=150.45 Aligned_cols=232 Identities=19% Similarity=0.187 Sum_probs=158.8
Q ss_pred eEEEEEEcCCCceEEEEEEcCCCCCCCCCCCccEEEEEcCCCCcCcccCCcccCCCCccCCCCchHHHHHHhCCeEEEEc
Q 004475 481 KEMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAG 560 (751)
Q Consensus 481 ~e~i~~~~~~~~~i~~~~~~P~~~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~v~~~ 560 (751)
..+..+...++..+....+.+.+. +..+||++||.+ .+...+..++..|..+||.|++
T Consensus 9 ~~~~~~~~~d~~~~~~~~~~~~~~------~~g~Vvl~HG~~---------------Eh~~ry~~la~~l~~~G~~V~~- 66 (298)
T COG2267 9 RTEGYFTGADGTRLRYRTWAAPEP------PKGVVVLVHGLG---------------EHSGRYEELADDLAARGFDVYA- 66 (298)
T ss_pred cccceeecCCCceEEEEeecCCCC------CCcEEEEecCch---------------HHHHHHHHHHHHHHhCCCEEEE-
Confidence 344556678899999999988651 237899999963 2223334567788999999999
Q ss_pred CCCCCCCCCCCC-CCc---hhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEccCCC
Q 004475 561 PSIPIIGEGDKL-PND---RFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGSY 636 (751)
Q Consensus 561 ~~~~~~g~g~~~-~~~---~~~~~~~~d~~~~v~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~~ 636 (751)
.|.+|+|.+. ... ..+.+...|+...++.+.+.. -..+++++||||||.+|+.++.+++..+.++|+.+|.+
T Consensus 67 --~D~RGhG~S~r~~rg~~~~f~~~~~dl~~~~~~~~~~~--~~~p~~l~gHSmGg~Ia~~~~~~~~~~i~~~vLssP~~ 142 (298)
T COG2267 67 --LDLRGHGRSPRGQRGHVDSFADYVDDLDAFVETIAEPD--PGLPVFLLGHSMGGLIALLYLARYPPRIDGLVLSSPAL 142 (298)
T ss_pred --ecCCCCCCCCCCCcCCchhHHHHHHHHHHHHHHHhccC--CCCCeEEEEeCcHHHHHHHHHHhCCccccEEEEECccc
Confidence 7788888875 222 224566777777777776641 23689999999999999999999999999999999987
Q ss_pred CCCC--C-----------------ccCccc----ccccch--hhH---HHHHh--------------------c--Cccc
Q 004475 637 NKTL--T-----------------PFGFQT----EFRTLW--EAT---NVYIE--------------------M--SPIT 666 (751)
Q Consensus 637 d~~~--~-----------------~~~~~~----~~~~~~--~~~---~~~~~--------------------~--~~~~ 666 (751)
.... . .+.... .....| .++ +.|.+ . ....
T Consensus 143 ~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~sr~~~~~~~~~~dP~~~~~~~~~~w~~~~~~a~~~~~~~ 222 (298)
T COG2267 143 GLGGAILRLILARLALKLLGRIRPKLPVDSNLLEGVLTDDLSRDPAEVAAYEADPLIGVGGPVSRWVDLALLAGRVPALR 222 (298)
T ss_pred cCChhHHHHHHHHHhcccccccccccccCcccccCcCcchhhcCHHHHHHHhcCCccccCCccHHHHHHHHHhhcccchh
Confidence 6441 0 000111 000000 000 01100 0 1112
Q ss_pred ccCCCCCCEEEEEcCCCCCCCCChHHHHHHHHHHHhCCCcEEEEEeCCCCCcCCccccH--HHHHHHHHHHHHHHhc
Q 004475 667 HANKIKKPILIIHGEVDDKVGLFPMQAERFFDALKGHGALSRLVLLPFEHHVYAARENV--MHVIWETDRWLQKYCL 741 (751)
Q Consensus 667 ~~~~~~~P~li~~G~~D~~vp~~~~~~~~~~~~l~~~~~~~~~~~~~~~~H~~~~~~~~--~~~~~~~~~fl~~~l~ 741 (751)
....+++|+|+++|+.|.+++. .....++++++... ++++++++++.|........ +++++.+.+||.++..
T Consensus 223 ~~~~~~~PvLll~g~~D~vv~~-~~~~~~~~~~~~~~--~~~~~~~~g~~He~~~E~~~~r~~~~~~~~~~l~~~~~ 296 (298)
T COG2267 223 DAPAIALPVLLLQGGDDRVVDN-VEGLARFFERAGSP--DKELKVIPGAYHELLNEPDRAREEVLKDILAWLAEALP 296 (298)
T ss_pred ccccccCCEEEEecCCCccccC-cHHHHHHHHhcCCC--CceEEecCCcchhhhcCcchHHHHHHHHHHHHHHhhcc
Confidence 2456789999999999999861 24445555444332 36899999999999877777 8999999999998764
No 57
>PF06500 DUF1100: Alpha/beta hydrolase of unknown function (DUF1100); InterPro: IPR010520 Proteins in this entry display esterase activity toward pNP-butyrate []. This entry also includes 2,6-dihydropseudooxynicotine hydrolase which has a role in nicotine catabolism by cleaving a C-C bond in 2,6-dihydroxypseudooxyicotine [, ].; PDB: 3OUR_A 3MVE_B 2JBW_C.
Probab=99.69 E-value=3.4e-16 Score=157.16 Aligned_cols=227 Identities=16% Similarity=0.198 Sum_probs=135.4
Q ss_pred CCceEEEEEEcCCCceEEEEEEcCCCCCCCCCCCccEEEEEcCCCCcCcccCCcccCCCCccCCCCchHH-HHHHhCCeE
Q 004475 478 SLQKEMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSS-LIFLARRFA 556 (751)
Q Consensus 478 ~~~~e~i~~~~~~~~~i~~~~~~P~~~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~G~~ 556 (751)
....+++.|+..+ ..|.+++++|.. .++.|+||++-|. +.+..-..... .+|+.+|++
T Consensus 162 ~~~i~~v~iP~eg-~~I~g~LhlP~~-----~~p~P~VIv~gGl---------------Ds~qeD~~~l~~~~l~~rGiA 220 (411)
T PF06500_consen 162 DYPIEEVEIPFEG-KTIPGYLHLPSG-----EKPYPTVIVCGGL---------------DSLQEDLYRLFRDYLAPRGIA 220 (411)
T ss_dssp SSEEEEEEEEETT-CEEEEEEEESSS-----SS-EEEEEEE--T---------------TS-GGGGHHHHHCCCHHCT-E
T ss_pred CCCcEEEEEeeCC-cEEEEEEEcCCC-----CCCCCEEEEeCCc---------------chhHHHHHHHHHHHHHhCCCE
Confidence 4568999998654 889999999984 4578999988663 22222222222 256789999
Q ss_pred EEEcCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEccCCC
Q 004475 557 VLAGPSIPIIGEGDKLPNDRFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGSY 636 (751)
Q Consensus 557 v~~~~~~~~~g~g~~~~~~~~~~~~~~d~~~~v~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~~ 636 (751)
++. .+.+|.|.+.... ..++...-...+++||.+.++||..||+++|.|+||+.|.++|..++++++++|+.++++
T Consensus 221 ~Lt---vDmPG~G~s~~~~-l~~D~~~l~~aVLd~L~~~p~VD~~RV~~~G~SfGGy~AvRlA~le~~RlkavV~~Ga~v 296 (411)
T PF06500_consen 221 MLT---VDMPGQGESPKWP-LTQDSSRLHQAVLDYLASRPWVDHTRVGAWGFSFGGYYAVRLAALEDPRLKAVVALGAPV 296 (411)
T ss_dssp EEE---E--TTSGGGTTT--S-S-CCHHHHHHHHHHHHSTTEEEEEEEEEEETHHHHHHHHHHHHTTTT-SEEEEES---
T ss_pred EEE---EccCCCcccccCC-CCcCHHHHHHHHHHHHhcCCccChhheEEEEeccchHHHHHHHHhcccceeeEeeeCchH
Confidence 999 5555655542211 112222234588999999999999999999999999999999998888999999999976
Q ss_pred CCCCCccCccccc------------ccchhhH----HHHHhcCcccc--c--CCCCCCEEEEEcCCCCCCCCChHHHHHH
Q 004475 637 NKTLTPFGFQTEF------------RTLWEAT----NVYIEMSPITH--A--NKIKKPILIIHGEVDDKVGLFPMQAERF 696 (751)
Q Consensus 637 d~~~~~~~~~~~~------------~~~~~~~----~~~~~~~~~~~--~--~~~~~P~li~~G~~D~~vp~~~~~~~~~ 696 (751)
...+......... +...... .....+|...+ + .+..+|+|.+.|++|+++| .+..+.+
T Consensus 297 h~~ft~~~~~~~~P~my~d~LA~rlG~~~~~~~~l~~el~~~SLk~qGlL~~rr~~~plL~i~~~~D~v~P--~eD~~li 374 (411)
T PF06500_consen 297 HHFFTDPEWQQRVPDMYLDVLASRLGMAAVSDESLRGELNKFSLKTQGLLSGRRCPTPLLAINGEDDPVSP--IEDSRLI 374 (411)
T ss_dssp SCGGH-HHHHTTS-HHHHHHHHHHCT-SCE-HHHHHHHGGGGSTTTTTTTTSS-BSS-EEEEEETT-SSS---HHHHHHH
T ss_pred hhhhccHHHHhcCCHHHHHHHHHHhCCccCCHHHHHHHHHhcCcchhccccCCCCCcceEEeecCCCCCCC--HHHHHHH
Confidence 5433221100000 0000001 11233343331 3 5567999999999999998 6665444
Q ss_pred HHHHHhCCCcEEEEEeCCCC-CcCCccccHHHHHHHHHHHHHHHh
Q 004475 697 FDALKGHGALSRLVLLPFEH-HVYAARENVMHVIWETDRWLQKYC 740 (751)
Q Consensus 697 ~~~l~~~~~~~~~~~~~~~~-H~~~~~~~~~~~~~~~~~fl~~~l 740 (751)
. ..+.+-+...++... |. .....+..+.+||++.|
T Consensus 375 a----~~s~~gk~~~~~~~~~~~-----gy~~al~~~~~Wl~~~l 410 (411)
T PF06500_consen 375 A----ESSTDGKALRIPSKPLHM-----GYPQALDEIYKWLEDKL 410 (411)
T ss_dssp H----HTBTT-EEEEE-SSSHHH-----HHHHHHHHHHHHHHHHH
T ss_pred H----hcCCCCceeecCCCcccc-----chHHHHHHHHHHHHHhc
Confidence 3 333344566666543 32 24477889999999875
No 58
>PF02230 Abhydrolase_2: Phospholipase/Carboxylesterase; InterPro: IPR003140 This entry represents the alpha/beta hydrolase domain found in phospholipases [], carboxylesterases [] and thioesterases.; GO: 0016787 hydrolase activity; PDB: 3U0V_A 1AUR_A 1AUO_B 1FJ2_B 3CN9_A 3CN7_A.
Probab=99.69 E-value=1e-15 Score=147.35 Aligned_cols=129 Identities=30% Similarity=0.340 Sum_probs=93.9
Q ss_pred HHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEccCCCCCCCCccCcccccccchhhHHHHHh
Q 004475 582 VSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGSYNKTLTPFGFQTEFRTLWEATNVYIE 661 (751)
Q Consensus 582 ~~d~~~~v~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 661 (751)
.+.+.+.++...+.. ++++||++.|+|+||.||+.++.++|+.+.++|+++|........ .
T Consensus 87 ~~~l~~li~~~~~~~-i~~~ri~l~GFSQGa~~al~~~l~~p~~~~gvv~lsG~~~~~~~~---~--------------- 147 (216)
T PF02230_consen 87 AERLDELIDEEVAYG-IDPSRIFLGGFSQGAAMALYLALRYPEPLAGVVALSGYLPPESEL---E--------------- 147 (216)
T ss_dssp HHHHHHHHHHHHHTT---GGGEEEEEETHHHHHHHHHHHCTSSTSSEEEEES---TTGCCC---H---------------
T ss_pred HHHHHHHHHHHHHcC-CChhheehhhhhhHHHHHHHHHHHcCcCcCEEEEeeccccccccc---c---------------
Confidence 444455555554444 899999999999999999999999999999999999975321100 0
Q ss_pred cCcccccCC-CCCCEEEEEcCCCCCCCCChHHHHHHHHHHHhCCCcEEEEEeCCCCCcCCccccHHHHHHHHHHHHHHHh
Q 004475 662 MSPITHANK-IKKPILIIHGEVDDKVGLFPMQAERFFDALKGHGALSRLVLLPFEHHVYAARENVMHVIWETDRWLQKYC 740 (751)
Q Consensus 662 ~~~~~~~~~-~~~P~li~~G~~D~~vp~~~~~~~~~~~~l~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~fl~~~l 740 (751)
..... -++|+|++||..|+++| ...+++.++.|++.+.+++++.|++.+|.+. .+.+..+.+||.+++
T Consensus 148 ----~~~~~~~~~pi~~~hG~~D~vvp--~~~~~~~~~~L~~~~~~v~~~~~~g~gH~i~-----~~~~~~~~~~l~~~~ 216 (216)
T PF02230_consen 148 ----DRPEALAKTPILIIHGDEDPVVP--FEWAEKTAEFLKAAGANVEFHEYPGGGHEIS-----PEELRDLREFLEKHI 216 (216)
T ss_dssp ----CCHCCCCTS-EEEEEETT-SSST--HHHHHHHHHHHHCTT-GEEEEEETT-SSS-------HHHHHHHHHHHHHH-
T ss_pred ----ccccccCCCcEEEEecCCCCccc--HHHHHHHHHHHHhcCCCEEEEEcCCCCCCCC-----HHHHHHHHHHHhhhC
Confidence 00111 16899999999999999 9999999999999999999999999999985 367888999999874
No 59
>TIGR01840 esterase_phb esterase, PHB depolymerase family. This model describes a subfamily among lipases of the ab-hydrolase family. This subfamily includes bacterial depolymerases for poly(3-hydroxybutyrate) (PHB) and related polyhydroxyalkanoates (PHA), as well as acetyl xylan esterases, feruloyl esterases, and others from fungi.
Probab=99.69 E-value=6.8e-16 Score=148.29 Aligned_cols=189 Identities=18% Similarity=0.139 Sum_probs=115.9
Q ss_pred EEEEcCCCCCCCCCCCccEEEEEcCCCCcCcccCCcccCCCCccCCCCchHHHHHHhCCeEEEEcCCCCCCCCCCCC--C
Q 004475 496 ATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGPSIPIIGEGDKL--P 573 (751)
Q Consensus 496 ~~~~~P~~~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~v~~~~~~~~~g~g~~~--~ 573 (751)
+++|+|++. .+++|+||++||++.... .+.. ...+...+.+.||+|+++++++..+.+... .
T Consensus 1 ~~ly~P~~~----~~~~P~vv~lHG~~~~~~-----------~~~~-~~~~~~~a~~~g~~Vv~Pd~~g~~~~~~~~~~~ 64 (212)
T TIGR01840 1 MYVYVPAGL----TGPRALVLALHGCGQTAS-----------AYVI-DWGWKAAADRYGFVLVAPEQTSYNSSNNCWDWF 64 (212)
T ss_pred CEEEcCCCC----CCCCCEEEEeCCCCCCHH-----------HHhh-hcChHHHHHhCCeEEEecCCcCccccCCCCCCC
Confidence 368899874 235899999999763211 1110 001233344579999996664332111100 0
Q ss_pred Cc---hhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEccCCCCCCCCcc-Cccccc
Q 004475 574 ND---RFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGSYNKTLTPF-GFQTEF 649 (751)
Q Consensus 574 ~~---~~~~~~~~d~~~~v~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~~d~~~~~~-~~~~~~ 649 (751)
.. ........++..+++++.++..+|++||+|+|||+||.+++.++.++|+.+++++++++......... ......
T Consensus 65 ~~~~~~~~~~~~~~~~~~i~~~~~~~~id~~~i~l~G~S~Gg~~a~~~a~~~p~~~~~~~~~~g~~~~~~~~~~~~~~~~ 144 (212)
T TIGR01840 65 FTHHRARGTGEVESLHQLIDAVKANYSIDPNRVYVTGLSAGGGMTAVLGCTYPDVFAGGASNAGLPYGEASSSISATPQM 144 (212)
T ss_pred CccccCCCCccHHHHHHHHHHHHHhcCcChhheEEEEECHHHHHHHHHHHhCchhheEEEeecCCcccccccchhhHhhc
Confidence 00 01123467788899999888789999999999999999999999999999999999887632110000 000000
Q ss_pred ccchhhHHHHHhc-Cc-ccccCCCCCCEEEEEcCCCCCCCCChHHHHHHHHHHHhC
Q 004475 650 RTLWEATNVYIEM-SP-ITHANKIKKPILIIHGEVDDKVGLFPMQAERFFDALKGH 703 (751)
Q Consensus 650 ~~~~~~~~~~~~~-~~-~~~~~~~~~P~li~~G~~D~~vp~~~~~~~~~~~~l~~~ 703 (751)
..-.....+.+. .. .....+..+|++++||++|.+|| +..++++++++++.
T Consensus 145 -~~~~~~~~~~~~~~~~~~~~~~~~p~~~i~hG~~D~vVp--~~~~~~~~~~l~~~ 197 (212)
T TIGR01840 145 -CTAATAASVCRLVRGMQSEYNGPTPIMSVVHGDADYTVL--PGNADEIRDAMLKV 197 (212)
T ss_pred -CCCCCHHHHHHHHhccCCcccCCCCeEEEEEcCCCceeC--cchHHHHHHHHHHh
Confidence 000011111111 00 11122334567899999999999 99999999999875
No 60
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=99.67 E-value=7.6e-15 Score=139.71 Aligned_cols=289 Identities=13% Similarity=0.112 Sum_probs=162.4
Q ss_pred cccceeecCCCCeEEEEEeecccccccCCceeEEEEEcCCCCeeeccCCCCccccceeeeeEEecCCcEEEEeecCCCCC
Q 004475 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRD 111 (751)
Q Consensus 32 ~~~~p~~SPDG~~iaf~~~~~~~~~~~~~~~~l~i~~~~~g~~~~lt~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~ 111 (751)
.+...+|||||++||.- .+...+.++|+.+..+.....+..+ -+..++|||||++|+..+.+
T Consensus 117 ~Vl~~~fsp~g~~l~tG----------sGD~TvR~WD~~TeTp~~t~KgH~~----WVlcvawsPDgk~iASG~~d---- 178 (480)
T KOG0271|consen 117 AVLSVQFSPTGSRLVTG----------SGDTTVRLWDLDTETPLFTCKGHKN----WVLCVAWSPDGKKIASGSKD---- 178 (480)
T ss_pred cEEEEEecCCCceEEec----------CCCceEEeeccCCCCcceeecCCcc----EEEEEEECCCcchhhccccC----
Confidence 67889999999999983 4556777777776544333333221 46788999999999977543
Q ss_pred CCCCCCCCCCCceeeccccccccchhhhhccCCccchhhhhhheeeEEEEEcC-CC--CceecCCC-ceEEeeee-----
Q 004475 112 PPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DG--TAKDFGTP-AVYTAVEP----- 182 (751)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~G--~~~~lt~~-~~~~~~~~----- 182 (751)
+.|.++|. +| ..+.|..+ ..+..++|
T Consensus 179 ---------------------------------------------g~I~lwdpktg~~~g~~l~gH~K~It~Lawep~hl 213 (480)
T KOG0271|consen 179 ---------------------------------------------GSIRLWDPKTGQQIGRALRGHKKWITALAWEPLHL 213 (480)
T ss_pred ---------------------------------------------CeEEEecCCCCCcccccccCcccceeEEeeccccc
Confidence 57888888 66 33556555 66766666
Q ss_pred CCCCceEEEEEecCCcccccccCCCceeEEEEeCCCcee-eeeccCCCCCC--------C-C------------------
Q 004475 183 SPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLV-RELCDLPPAED--------I-P------------------ 234 (751)
Q Consensus 183 SpDG~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~-~~l~~~~~~~~--------~-~------------------ 234 (751)
.|..++|+-.+.+ +++.+||+..+.. ..++.+..... . .
T Consensus 214 ~p~~r~las~skD-------------g~vrIWd~~~~~~~~~lsgHT~~VTCvrwGG~gliySgS~DrtIkvw~a~dG~~ 280 (480)
T KOG0271|consen 214 VPPCRRLASSSKD-------------GSVRIWDTKLGTCVRTLSGHTASVTCVRWGGEGLIYSGSQDRTIKVWRALDGKL 280 (480)
T ss_pred CCCccceecccCC-------------CCEEEEEccCceEEEEeccCccceEEEEEcCCceEEecCCCceEEEEEccchhH
Confidence 4567766655433 3577888875543 33333321100 0 0
Q ss_pred -CccCCccCCCce-----------eeeecCCCceEEEEEe------------ccCCCCccccCcccceeeccCCCCCCCC
Q 004475 235 -VCYNSVREGMRS-----------ISWRADKPSTLYWVEA------------QDRGDANVEVSPRDIIYTQPAEPAEGEK 290 (751)
Q Consensus 235 -~~~~~~~~~~~~-----------~~~spdG~~~i~~~~~------------~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 290 (751)
..+......+.. =+|.|.|++.--+.+. .+.+.--+...+...+|+++-. .....
T Consensus 281 ~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~-~~kkp 359 (480)
T KOG0271|consen 281 CRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPF-KSKKP 359 (480)
T ss_pred HHhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEecCCceEEEeccc-ccccc
Confidence 000000011111 1222333220000000 0000001112233577777752 11223
Q ss_pred ceEeEeeceeEE-EEEecCCceEEEeeeecccceeEEEecCCCCCCcceeeeecccccccCCCCCCCeeeCCCCCEEEEe
Q 004475 291 PEILHKLDLRFS-VSWCDDSLALVNETWYKTSQTRTWLVCPGSKDVAPRVLFDRVFENVYSDPGSPMMTRTSTGTNVIAK 369 (751)
Q Consensus 291 ~~~l~~~~~~~~-~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~spDG~~l~~~ 369 (751)
.+..+.+...+. +.||||+++|+-++-. ..+-+.+..++ +....+.+....++. ++||.|.+.|+..
T Consensus 360 i~rmtgHq~lVn~V~fSPd~r~IASaSFD----kSVkLW~g~tG--k~lasfRGHv~~VYq------vawsaDsRLlVS~ 427 (480)
T KOG0271|consen 360 ITRMTGHQALVNHVSFSPDGRYIASASFD----KSVKLWDGRTG--KFLASFRGHVAAVYQ------VAWSADSRLLVSG 427 (480)
T ss_pred hhhhhchhhheeeEEECCCccEEEEeecc----cceeeeeCCCc--chhhhhhhccceeEE------EEeccCccEEEEc
Confidence 345566666677 9999999999876632 23444455554 222234445566666 8999999988887
Q ss_pred eeecCCcceEEEEccCCCCCCCCCceeEEEecCCCcee-EEeeccchhhhhceeeeecCCcceeeccCCCEEEE
Q 004475 370 IKKENDEQIYILLNGRGFTPEGNIPFLDLFDINTGSKE-RIWESNREKYFETAVALVFGQGEEDINLNQLKILT 442 (751)
Q Consensus 370 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~ 442 (751)
+.+. .|.+|++.+.+.. .|..... .|.. +.|||||++++-
T Consensus 428 SkDs---------------------TLKvw~V~tkKl~~DLpGh~D-----EVf~-------vDwspDG~rV~s 468 (480)
T KOG0271|consen 428 SKDS---------------------TLKVWDVRTKKLKQDLPGHAD-----EVFA-------VDWSPDGQRVAS 468 (480)
T ss_pred CCCc---------------------eEEEEEeeeeeecccCCCCCc-----eEEE-------EEecCCCceeec
Confidence 7543 7999999877653 2322221 1333 489999987663
No 61
>COG0657 Aes Esterase/lipase [Lipid metabolism]
Probab=99.66 E-value=7.7e-15 Score=150.38 Aligned_cols=222 Identities=19% Similarity=0.196 Sum_probs=149.0
Q ss_pred CCCceEEEEEEcCCCCCCCCCCCccEEEEEcCCCCcCcccCCcccCCCCccCCCCchHHHHHHhCCeEEEEcCCCCCCCC
Q 004475 489 KDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGPSIPIIGE 568 (751)
Q Consensus 489 ~~~~~i~~~~~~P~~~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~v~~~~~~~~~g~ 568 (751)
..+..+.+.+|.|.. ....+.|+|||+|||||..++. ... .......++..|+.|+.++|+-...
T Consensus 59 ~~~~~~~~~~y~p~~---~~~~~~p~vly~HGGg~~~g~~--------~~~---~~~~~~~~~~~g~~vv~vdYrlaPe- 123 (312)
T COG0657 59 PSGDGVPVRVYRPDR---KAAATAPVVLYLHGGGWVLGSL--------RTH---DALVARLAAAAGAVVVSVDYRLAPE- 123 (312)
T ss_pred CCCCceeEEEECCCC---CCCCCCcEEEEEeCCeeeecCh--------hhh---HHHHHHHHHHcCCEEEecCCCCCCC-
Confidence 344458899999921 1233589999999999765433 211 1123445567899999988853322
Q ss_pred CCCCCCchhHHHHHHHHHHHHHHHHHcC---CCCCCcEEEEEeChHHHHHHHHHHhCCC----ceeEEEEccCCCCCCCC
Q 004475 569 GDKLPNDRFVEQLVSSAEAAVEEVVRRG---VADPSRIAVGGHSYGAFMTAHLLAHAPH----LFCCGIARSGSYNKTLT 641 (751)
Q Consensus 569 g~~~~~~~~~~~~~~d~~~~v~~l~~~~---~id~~~i~l~G~S~GG~~a~~~a~~~p~----~~~~~v~~~~~~d~~~~ 641 (751)
..+...++|+.+++.|++++. .+|+++|+++|+|.||++|+.++....+ ...+.++++|..|....
T Consensus 124 -------~~~p~~~~d~~~a~~~l~~~~~~~g~dp~~i~v~GdSAGG~La~~~a~~~~~~~~~~p~~~~li~P~~d~~~~ 196 (312)
T COG0657 124 -------HPFPAALEDAYAAYRWLRANAAELGIDPSRIAVAGDSAGGHLALALALAARDRGLPLPAAQVLISPLLDLTSS 196 (312)
T ss_pred -------CCCCchHHHHHHHHHHHHhhhHhhCCCccceEEEecCcccHHHHHHHHHHHhcCCCCceEEEEEecccCCccc
Confidence 233566888999999999763 4899999999999999999999876543 47889999998886541
Q ss_pred ccCcc-cccccchhh-------HHHHH---------hcCcccc--cCCCCCCEEEEEcCCCCCCCCChHHHHHHHHHHHh
Q 004475 642 PFGFQ-TEFRTLWEA-------TNVYI---------EMSPITH--ANKIKKPILIIHGEVDDKVGLFPMQAERFFDALKG 702 (751)
Q Consensus 642 ~~~~~-~~~~~~~~~-------~~~~~---------~~~~~~~--~~~~~~P~li~~G~~D~~vp~~~~~~~~~~~~l~~ 702 (751)
...+. ......... ...|. ..+|+.. +.. -+|+|+++|+.|.+. .+++.+.++|++
T Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~spl~~~~~~~-lPP~~i~~a~~D~l~----~~~~~~a~~L~~ 271 (312)
T COG0657 197 AASLPGYGEADLLDAAAILAWFADLYLGAAPDREDPEASPLASDDLSG-LPPTLIQTAEFDPLR----DEGEAYAERLRA 271 (312)
T ss_pred ccchhhcCCccccCHHHHHHHHHHHhCcCccccCCCccCccccccccC-CCCEEEEecCCCcch----hHHHHHHHHHHH
Confidence 10010 000000000 00110 1222221 222 478999999999984 588899999999
Q ss_pred CCCcEEEEEeCCCCCcCCccc--cHHHHHHHHHHHHH
Q 004475 703 HGALSRLVLLPFEHHVYAARE--NVMHVIWETDRWLQ 737 (751)
Q Consensus 703 ~~~~~~~~~~~~~~H~~~~~~--~~~~~~~~~~~fl~ 737 (751)
+|++++++.+++..|.|.... .....+..+.+|+.
T Consensus 272 agv~~~~~~~~g~~H~f~~~~~~~a~~~~~~~~~~l~ 308 (312)
T COG0657 272 AGVPVELRVYPGMIHGFDLLTGPEARSALRQIAAFLR 308 (312)
T ss_pred cCCeEEEEEeCCcceeccccCcHHHHHHHHHHHHHHH
Confidence 999999999999999884333 23445667777776
No 62
>COG4099 Predicted peptidase [General function prediction only]
Probab=99.66 E-value=1.2e-15 Score=141.22 Aligned_cols=208 Identities=19% Similarity=0.192 Sum_probs=137.9
Q ss_pred CCCceEEEEEEcCCCCCCCCCCCc-cEEEEEcCCCCcCcccCCcccCCCCccCCCCchHHHHHHhCCeEEEEcCCCCCCC
Q 004475 489 KDGVPLTATLYLPPGYDQSKDGPL-PCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGPSIPIIG 567 (751)
Q Consensus 489 ~~~~~i~~~~~~P~~~~~~~~~~~-P~vv~~HGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~v~~~~~~~~~g 567 (751)
..|.++...+|.|.++.++++ + |+|||+||+|.+..+..-.+..+..... -..-+.++-|++|.+-....
T Consensus 169 ~tgneLkYrly~Pkdy~pdkk--y~PLvlfLHgagq~g~dn~~~l~sg~gaia-------wa~pedqcfVlAPQy~~if~ 239 (387)
T COG4099 169 STGNELKYRLYTPKDYAPDKK--YYPLVLFLHGAGQGGSDNDKVLSSGIGAIA-------WAGPEDQCFVLAPQYNPIFA 239 (387)
T ss_pred ccCceeeEEEecccccCCCCc--cccEEEEEecCCCCCchhhhhhhcCcccee-------eecccCceEEEccccccccc
Confidence 456789999999999988774 6 9999999998766554433332211100 01122456777755422111
Q ss_pred CCCCCCCchhHHHHHHHHHHHH-HHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEccCCCCCCCCccCcc
Q 004475 568 EGDKLPNDRFVEQLVSSAEAAV-EEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGSYNKTLTPFGFQ 646 (751)
Q Consensus 568 ~g~~~~~~~~~~~~~~d~~~~v-~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~~d~~~~~~~~~ 646 (751)
..++ ... ........++ +-|.+++.||.+||.++|.|+||++++.++.++|+.|++++.++|--|..
T Consensus 240 d~e~-~t~----~~l~~~idli~~vlas~ynID~sRIYviGlSrG~~gt~al~~kfPdfFAaa~~iaG~~d~v------- 307 (387)
T COG4099 240 DSEE-KTL----LYLIEKIDLILEVLASTYNIDRSRIYVIGLSRGGFGTWALAEKFPDFFAAAVPIAGGGDRV------- 307 (387)
T ss_pred cccc-ccc----hhHHHHHHHHHHHHhhccCcccceEEEEeecCcchhhHHHHHhCchhhheeeeecCCCchh-------
Confidence 1111 111 1122233444 47778899999999999999999999999999999999999999965421
Q ss_pred cccccchhhHHHHHhcCcccccCC-CCCCEEEEEcCCCCCCCCChHHHHHHHHHHHhCCCcEEEEEeCC---CCCcCCcc
Q 004475 647 TEFRTLWEATNVYIEMSPITHANK-IKKPILIIHGEVDDKVGLFPMQAERFFDALKGHGALSRLVLLPF---EHHVYAAR 722 (751)
Q Consensus 647 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~P~li~~G~~D~~vp~~~~~~~~~~~~l~~~~~~~~~~~~~~---~~H~~~~~ 722 (751)
.+++. -+.|+.++|+.+|.++| .+.++-+++.|++.+.++.+..|.. ..|+....
T Consensus 308 -------------------~lv~~lk~~piWvfhs~dDkv~P--v~nSrv~y~~lk~~~~kv~Ytaf~~g~~~~eG~d~~ 366 (387)
T COG4099 308 -------------------YLVRTLKKAPIWVFHSSDDKVIP--VSNSRVLYERLKALDRKVNYTAFLEGTTVLEGVDHS 366 (387)
T ss_pred -------------------hhhhhhccCceEEEEecCCCccc--cCcceeehHHHHhhccccchhhhhhccccccccCCC
Confidence 01111 25899999999999999 9999999999999888877776652 23333322
Q ss_pred ccHH--HHHHHHHHHHHH
Q 004475 723 ENVM--HVIWETDRWLQK 738 (751)
Q Consensus 723 ~~~~--~~~~~~~~fl~~ 738 (751)
..+. ....++++||-+
T Consensus 367 g~w~atyn~~eaieWLl~ 384 (387)
T COG4099 367 GVWWATYNDAEAIEWLLK 384 (387)
T ss_pred CcceeecCCHHHHHHHHh
Confidence 2221 123456777754
No 63
>TIGR01607 PST-A Plasmodium subtelomeric family (PST-A). These genes are preferentially located in the subtelomeric regions of the chromosomes of both P. falciparum and P. yoelii.
Probab=99.66 E-value=6.7e-15 Score=151.17 Aligned_cols=236 Identities=16% Similarity=0.149 Sum_probs=146.7
Q ss_pred EEcCCCceEEEEEEcCCCCCCCCCCCccEEEEEcCCCCcCcccCCcccC-------------CCCccCCCCchHHHHHHh
Q 004475 486 YQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRG-------------SPNEFSGMTPTSSLIFLA 552 (751)
Q Consensus 486 ~~~~~~~~i~~~~~~P~~~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~ 552 (751)
|.+.+|..+..+.|.|+. +..+|+++||-+.-+.. ..+.. .+..+..+...++..|.+
T Consensus 2 ~~~~~g~~l~~~~~~~~~-------~kg~v~i~HG~~eh~~~--~~~~~~~~~~~~~~~~~~~~~ry~~y~~~~~~~l~~ 72 (332)
T TIGR01607 2 FRNKDGLLLKTYSWIVKN-------AIGIIVLIHGLKSHLRL--QFLKINAKIVNNDRAVLIDTDNYYIYKDSWIENFNK 72 (332)
T ss_pred ccCCCCCeEEEeeeeccC-------CeEEEEEECCCchhhhh--hhhhcCcccCCCCeeEEEcCCcceEeeHHHHHHHHH
Confidence 345688889999998853 35799999995421100 00000 000110111245778899
Q ss_pred CCeEEEEcCCCCCCCCCCCCCC---c---hhHHHHHHHHHHHHHHHHHc------------------CCCCCCcEEEEEe
Q 004475 553 RRFAVLAGPSIPIIGEGDKLPN---D---RFVEQLVSSAEAAVEEVVRR------------------GVADPSRIAVGGH 608 (751)
Q Consensus 553 ~G~~v~~~~~~~~~g~g~~~~~---~---~~~~~~~~d~~~~v~~l~~~------------------~~id~~~i~l~G~ 608 (751)
+||.|++ .+.+|+|.+... . ....+.++|+...++.+.+. ..-...+++|+||
T Consensus 73 ~G~~V~~---~D~rGHG~S~~~~~~~g~~~~~~~~v~Dl~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~Gh 149 (332)
T TIGR01607 73 NGYSVYG---LDLQGHGESDGLQNLRGHINCFDDLVYDVIQYMNRINDSIILENETKSDDESYDIVNTKENRLPMYIIGL 149 (332)
T ss_pred CCCcEEE---ecccccCCCccccccccchhhHHHHHHHHHHHHHHhhhhhccccccccccccccccccccCCCceeEeec
Confidence 9999999 677788866432 1 23567788888888887652 0111357999999
Q ss_pred ChHHHHHHHHHHhCCC--------ceeEEEEccCCCCCCCC--------c----------------cCcccccccch---
Q 004475 609 SYGAFMTAHLLAHAPH--------LFCCGIARSGSYNKTLT--------P----------------FGFQTEFRTLW--- 653 (751)
Q Consensus 609 S~GG~~a~~~a~~~p~--------~~~~~v~~~~~~d~~~~--------~----------------~~~~~~~~~~~--- 653 (751)
||||.+++.++...++ .++++|+.+|.+..... . ..........+
T Consensus 150 SmGg~i~~~~~~~~~~~~~~~~~~~i~g~i~~s~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~~~~ 229 (332)
T TIGR01607 150 SMGGNIALRLLELLGKSNENNDKLNIKGCISLSGMISIKSVGSDDSFKFKYFYLPVMNFMSRVFPTFRISKKIRYEKSPY 229 (332)
T ss_pred cCccHHHHHHHHHhccccccccccccceEEEeccceEEecccCCCcchhhhhHHHHHHHHHHHCCcccccCccccccChh
Confidence 9999999998865432 58888888876421100 0 00000000000
Q ss_pred h------h---------HHH---HHhc--CcccccCCC--CCCEEEEEcCCCCCCCCChHHHHHHHHHHHhCCCcEEEEE
Q 004475 654 E------A---------TNV---YIEM--SPITHANKI--KKPILIIHGEVDDKVGLFPMQAERFFDALKGHGALSRLVL 711 (751)
Q Consensus 654 ~------~---------~~~---~~~~--~~~~~~~~~--~~P~li~~G~~D~~vp~~~~~~~~~~~~l~~~~~~~~~~~ 711 (751)
. + ... +... .....+.++ ++|+|++||++|.+++ +..++.+++++.. ..+++++
T Consensus 230 ~~~~~~~Dp~~~~~~~s~~~~~~l~~~~~~~~~~~~~i~~~~P~Lii~G~~D~vv~--~~~~~~~~~~~~~--~~~~l~~ 305 (332)
T TIGR01607 230 VNDIIKFDKFRYDGGITFNLASELIKATDTLDCDIDYIPKDIPILFIHSKGDCVCS--YEGTVSFYNKLSI--SNKELHT 305 (332)
T ss_pred hhhHHhcCccccCCcccHHHHHHHHHHHHHHHhhHhhCCCCCCEEEEEeCCCCccC--HHHHHHHHHhccC--CCcEEEE
Confidence 0 0 000 0000 001123444 6899999999999998 8888888776543 3468899
Q ss_pred eCCCCCcCCccccHHHHHHHHHHHHH
Q 004475 712 LPFEHHVYAARENVMHVIWETDRWLQ 737 (751)
Q Consensus 712 ~~~~~H~~~~~~~~~~~~~~~~~fl~ 737 (751)
+++++|.+.......+++..+.+||.
T Consensus 306 ~~g~~H~i~~E~~~~~v~~~i~~wL~ 331 (332)
T TIGR01607 306 LEDMDHVITIEPGNEEVLKKIIEWIS 331 (332)
T ss_pred ECCCCCCCccCCCHHHHHHHHHHHhh
Confidence 99999999876667889999999985
No 64
>PF12715 Abhydrolase_7: Abhydrolase family; PDB: 3NUZ_C 3G8Y_A.
Probab=99.65 E-value=4.6e-16 Score=152.96 Aligned_cols=226 Identities=17% Similarity=0.230 Sum_probs=117.1
Q ss_pred ccCCceEEEEEEcCCCceEEEEEEcCCCCCCCCCCCccEEEEEcCCCCcCcccCCccc---CCCCccCCCCchHHHHHHh
Q 004475 476 LASLQKEMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVR---GSPNEFSGMTPTSSLIFLA 552 (751)
Q Consensus 476 ~~~~~~e~i~~~~~~~~~i~~~~~~P~~~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~ 552 (751)
.+.+..|++.|....+..+.++++.|++. ++|.|+||++||.|.....-.+... ................|+.
T Consensus 83 rdGY~~EKv~f~~~p~~~vpaylLvPd~~----~~p~PAVL~lHgHg~~Ke~~~g~~gv~~~~~~~~~~~~~~~g~~LAk 158 (390)
T PF12715_consen 83 RDGYTREKVEFNTTPGSRVPAYLLVPDGA----KGPFPAVLCLHGHGGGKEKMAGEDGVSPDLKDDYDDPKQDYGDQLAK 158 (390)
T ss_dssp ETTEEEEEEEE--STTB-EEEEEEEETT------S-EEEEEEE--TT--HHHHCT---SSGCG--STTSTTT-HHHHHHT
T ss_pred cCCeEEEEEEEEccCCeeEEEEEEecCCC----CCCCCEEEEeCCCCCCcccccCCcccccccchhhccccccHHHHHHh
Confidence 45578899999999999999999999874 4679999999997643211111110 1111122223345779999
Q ss_pred CCeEEEEcCCCCCCCCCCCCCC------c--h--------------hHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeCh
Q 004475 553 RRFAVLAGPSIPIIGEGDKLPN------D--R--------------FVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSY 610 (751)
Q Consensus 553 ~G~~v~~~~~~~~~g~g~~~~~------~--~--------------~~~~~~~d~~~~v~~l~~~~~id~~~i~l~G~S~ 610 (751)
+||+|+++|. .|+|+.... . . +.....-|...+++||.+++.||++||+++|+||
T Consensus 159 ~GYVvla~D~---~g~GER~~~e~~~~~~~~~~~~la~~~l~lG~S~~G~~~~ddmr~lDfL~slpeVD~~RIG~~GfSm 235 (390)
T PF12715_consen 159 RGYVVLAPDA---LGFGERGDMEGAAQGSNYDCQALARNLLMLGRSLAGLMAWDDMRALDFLASLPEVDPDRIGCMGFSM 235 (390)
T ss_dssp TTSEEEEE-----TTSGGG-SSCCCTTTTS--HHHHHHHHHHTT--HHHHHHHHHHHHHHHHCT-TTEEEEEEEEEEEGG
T ss_pred CCCEEEEEcc---ccccccccccccccccchhHHHHHHHHHHcCcCHHHHHHHHHHHHHHHHhcCcccCccceEEEeecc
Confidence 9999999554 444432110 0 0 0112245667799999999999999999999999
Q ss_pred HHHHHHHHHHhCCCceeEEEEccCCCCCCC--Ccc---------CcccccccchhhHHHHHhcCcccccCCCCCCEEEEE
Q 004475 611 GAFMTAHLLAHAPHLFCCGIARSGSYNKTL--TPF---------GFQTEFRTLWEATNVYIEMSPITHANKIKKPILIIH 679 (751)
Q Consensus 611 GG~~a~~~a~~~p~~~~~~v~~~~~~d~~~--~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~li~~ 679 (751)
||+.++++++.. +++++.|+.+.+..... ... ++.......-+....+.++.-+.-+ -...|+|++.
T Consensus 236 Gg~~a~~LaALD-dRIka~v~~~~l~~~~~~~~~mt~~~~~~~~~~~~~~~~~iPgl~r~~D~PdIasl-iAPRPll~~n 313 (390)
T PF12715_consen 236 GGYRAWWLAALD-DRIKATVANGYLCTTQERALLMTMPNNNGLRGFPNCICNYIPGLWRYFDFPDIASL-IAPRPLLFEN 313 (390)
T ss_dssp GHHHHHHHHHH--TT--EEEEES-B--HHHHHHHB----TTS----SS-GGG--TTCCCC--HHHHHHT-TTTS-EEESS
T ss_pred cHHHHHHHHHcc-hhhHhHhhhhhhhccchhhHhhccccccccCcCcchhhhhCccHHhhCccHHHHHH-hCCCcchhhc
Confidence 999999999999 78888887655421100 000 0000000000000000000000000 1247999999
Q ss_pred cCCCCCCCCChHHHHHHHHHHHhCCCcEEEEEeCCC
Q 004475 680 GEVDDKVGLFPMQAERFFDALKGHGALSRLVLLPFE 715 (751)
Q Consensus 680 G~~D~~vp~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 715 (751)
|..|..+| . .+..|+.+ .++.++++..||+.
T Consensus 314 G~~Dklf~--i--V~~AY~~~-~~p~n~~~~~~p~~ 344 (390)
T PF12715_consen 314 GGKDKLFP--I--VRRAYAIM-GAPDNFQIHHYPKF 344 (390)
T ss_dssp -B-HHHHH--H--HHHHHHHT-T-GGGEEE---GGG
T ss_pred CCcccccH--H--HHHHHHhc-CCCcceEEeecccc
Confidence 99998865 3 44555443 33457888888864
No 65
>PRK05371 x-prolyl-dipeptidyl aminopeptidase; Provisional
Probab=99.65 E-value=3.8e-14 Score=158.86 Aligned_cols=192 Identities=23% Similarity=0.248 Sum_probs=141.9
Q ss_pred hHHHHHHhCCeEEEEcCCCCCCCCCCCCCCch-hHHHHHHHHHHHHHHHHHc---------------CCCCCCcEEEEEe
Q 004475 545 TSSLIFLARRFAVLAGPSIPIIGEGDKLPNDR-FVEQLVSSAEAAVEEVVRR---------------GVADPSRIAVGGH 608 (751)
Q Consensus 545 ~~~~~~~~~G~~v~~~~~~~~~g~g~~~~~~~-~~~~~~~d~~~~v~~l~~~---------------~~id~~~i~l~G~ 608 (751)
.+..+|+.+||+|+. .+.+|.+.+.+... +.....+|..++|+||..+ ++. ..||+++|.
T Consensus 270 ~~~~~~~~rGYaVV~---~D~RGtg~SeG~~~~~~~~E~~D~~~vIeWl~~~~~~~~d~~~~~~~kq~Ws-nGkVGm~G~ 345 (767)
T PRK05371 270 SLNDYFLPRGFAVVY---VSGIGTRGSDGCPTTGDYQEIESMKAVIDWLNGRATAYTDRTRGKEVKADWS-NGKVAMTGK 345 (767)
T ss_pred hHHHHHHhCCeEEEE---EcCCCCCCCCCcCccCCHHHHHHHHHHHHHHhhCCccccccccccccccCCC-CCeeEEEEE
Confidence 456789999999999 56667666654322 2366789999999999853 232 479999999
Q ss_pred ChHHHHHHHHHHhCCCceeEEEEccCCCCCCCC---------ccCccccc---------------------ccchh----
Q 004475 609 SYGAFMTAHLLAHAPHLFCCGIARSGSYNKTLT---------PFGFQTEF---------------------RTLWE---- 654 (751)
Q Consensus 609 S~GG~~a~~~a~~~p~~~~~~v~~~~~~d~~~~---------~~~~~~~~---------------------~~~~~---- 654 (751)
||||++++.+|+..|+.++++|+.+++.++... +.++..+. ...+.
T Consensus 346 SY~G~~~~~aAa~~pp~LkAIVp~a~is~~yd~yr~~G~~~~~~g~~ged~d~l~~~~~~r~~~~~~~~~~~~~~~~~~~ 425 (767)
T PRK05371 346 SYLGTLPNAVATTGVEGLETIIPEAAISSWYDYYRENGLVRAPGGYQGEDLDVLAELTYSRNLLAGDYLRHNEACEKLLA 425 (767)
T ss_pred cHHHHHHHHHHhhCCCcceEEEeeCCCCcHHHHhhcCCceeccCCcCCcchhhHHHHhhhcccCcchhhcchHHHHHHHh
Confidence 999999999999988899999999887653210 00110000 00000
Q ss_pred ------------hHHHHHhcCcccccCCCCCCEEEEEcCCCCCCCCChHHHHHHHHHHHhCCCcEEEEEeCCCCCcCCcc
Q 004475 655 ------------ATNVYIEMSPITHANKIKKPILIIHGEVDDKVGLFPMQAERFFDALKGHGALSRLVLLPFEHHVYAAR 722 (751)
Q Consensus 655 ------------~~~~~~~~~~~~~~~~~~~P~li~~G~~D~~vp~~~~~~~~~~~~l~~~~~~~~~~~~~~~~H~~~~~ 722 (751)
..+.|...++..+++++++|+|++||..|..++ +.++.+++++|++.+.+.++.+.++ +|.....
T Consensus 426 ~~~~~~~~~~~~y~~fW~~rn~~~~~~kIkvPvLlIhGw~D~~V~--~~~s~~ly~aL~~~g~pkkL~l~~g-~H~~~~~ 502 (767)
T PRK05371 426 ELTAAQDRKTGDYNDFWDDRNYLKDADKIKASVLVVHGLNDWNVK--PKQVYQWWDALPENGVPKKLFLHQG-GHVYPNN 502 (767)
T ss_pred hhhhhhhhcCCCccHHHHhCCHhhHhhCCCCCEEEEeeCCCCCCC--hHHHHHHHHHHHhcCCCeEEEEeCC-CccCCCc
Confidence 012344556677888999999999999999998 8999999999999888889988776 5865544
Q ss_pred ccHHHHHHHHHHHHHHHhcCC
Q 004475 723 ENVMHVIWETDRWLQKYCLSN 743 (751)
Q Consensus 723 ~~~~~~~~~~~~fl~~~l~~~ 743 (751)
....++.+.+.+||+++|+..
T Consensus 503 ~~~~d~~e~~~~Wfd~~LkG~ 523 (767)
T PRK05371 503 WQSIDFRDTMNAWFTHKLLGI 523 (767)
T ss_pred hhHHHHHHHHHHHHHhccccC
Confidence 445678889999999998753
No 66
>KOG1515 consensus Arylacetamide deacetylase [Defense mechanisms]
Probab=99.64 E-value=2e-14 Score=142.99 Aligned_cols=235 Identities=14% Similarity=0.107 Sum_probs=155.4
Q ss_pred CceEEEEEEcCCCceEEEEEEcCCCCCCCCCCCccEEEEEcCCCCcCcccCCcccCCCCccCCCCchHHHHHH-hCCeEE
Q 004475 479 LQKEMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFL-ARRFAV 557 (751)
Q Consensus 479 ~~~e~i~~~~~~~~~i~~~~~~P~~~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~G~~v 557 (751)
+....+.+. ....+...+|+|....+. .+.|+|||+|||||..++.. ...+..++..++ ..+.+|
T Consensus 61 v~~~dv~~~--~~~~l~vRly~P~~~~~~--~~~p~lvyfHGGGf~~~S~~----------~~~y~~~~~~~a~~~~~vv 126 (336)
T KOG1515|consen 61 VTSKDVTID--PFTNLPVRLYRPTSSSSE--TKLPVLVYFHGGGFCLGSAN----------SPAYDSFCTRLAAELNCVV 126 (336)
T ss_pred ceeeeeEec--CCCCeEEEEEcCCCCCcc--cCceEEEEEeCCccEeCCCC----------CchhHHHHHHHHHHcCeEE
Confidence 334555555 344689999999875542 24899999999998654321 112234455554 579999
Q ss_pred EEcCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHHHHc----CCCCCCcEEEEEeChHHHHHHHHHHhC------CCcee
Q 004475 558 LAGPSIPIIGEGDKLPNDRFVEQLVSSAEAAVEEVVRR----GVADPSRIAVGGHSYGAFMTAHLLAHA------PHLFC 627 (751)
Q Consensus 558 ~~~~~~~~~g~g~~~~~~~~~~~~~~d~~~~v~~l~~~----~~id~~~i~l~G~S~GG~~a~~~a~~~------p~~~~ 627 (751)
+.++|+-- +....+..++|...++.|+.++ ..+|++||+|+|-|.||++|..++.+. +-+++
T Consensus 127 vSVdYRLA--------PEh~~Pa~y~D~~~Al~w~~~~~~~~~~~D~~rv~l~GDSaGGNia~~va~r~~~~~~~~~ki~ 198 (336)
T KOG1515|consen 127 VSVDYRLA--------PEHPFPAAYDDGWAALKWVLKNSWLKLGADPSRVFLAGDSAGGNIAHVVAQRAADEKLSKPKIK 198 (336)
T ss_pred EecCcccC--------CCCCCCccchHHHHHHHHHHHhHHHHhCCCcccEEEEccCccHHHHHHHHHHHhhccCCCcceE
Confidence 99888532 2233455678888999998875 458999999999999999999998643 24689
Q ss_pred EEEEccCCCCCCCCcc---C--cccccccchhhHHHHHh--------------cCccc-----ccCCCC-CCEEEEEcCC
Q 004475 628 CGIARSGSYNKTLTPF---G--FQTEFRTLWEATNVYIE--------------MSPIT-----HANKIK-KPILIIHGEV 682 (751)
Q Consensus 628 ~~v~~~~~~d~~~~~~---~--~~~~~~~~~~~~~~~~~--------------~~~~~-----~~~~~~-~P~li~~G~~ 682 (751)
+.|++.|++.-..... . ........+...+.++. .++.. ...... +|+|++.++.
T Consensus 199 g~ili~P~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~w~~~lP~~~~~~~~p~~np~~~~~~~d~~~~~lp~tlv~~ag~ 278 (336)
T KOG1515|consen 199 GQILIYPFFQGTDRTESEKQQNLNGSPELARPKIDKWWRLLLPNGKTDLDHPFINPVGNSLAKDLSGLGLPPTLVVVAGY 278 (336)
T ss_pred EEEEEecccCCCCCCCHHHHHhhcCCcchhHHHHHHHHHHhCCCCCCCcCCccccccccccccCccccCCCceEEEEeCc
Confidence 9999999865221110 0 00001111111111111 01121 011122 5699999999
Q ss_pred CCCCCCChHHHHHHHHHHHhCCCcEEEEEeCCCCCcCCccc----cHHHHHHHHHHHHHHH
Q 004475 683 DDKVGLFPMQAERFFDALKGHGALSRLVLLPFEHHVYAARE----NVMHVIWETDRWLQKY 739 (751)
Q Consensus 683 D~~vp~~~~~~~~~~~~l~~~~~~~~~~~~~~~~H~~~~~~----~~~~~~~~~~~fl~~~ 739 (751)
|.+ .+++..+.++|++.|+++++..++++.|++.... .....++++.+|+.+.
T Consensus 279 D~L----~D~~~~Y~~~Lkk~Gv~v~~~~~e~~~H~~~~~~~~~~~a~~~~~~i~~fi~~~ 335 (336)
T KOG1515|consen 279 DVL----RDEGLAYAEKLKKAGVEVTLIHYEDGFHGFHILDPSSKEAHALMDAIVEFIKSN 335 (336)
T ss_pred hhh----hhhhHHHHHHHHHcCCeEEEEEECCCeeEEEecCCchhhHHHHHHHHHHHHhhc
Confidence 988 6889999999999999999999999999975433 3345677778887653
No 67
>TIGR00976 /NonD putative hydrolase, CocE/NonD family. This model represents a protein subfamily that includes the cocaine esterase CocE, several glutaryl-7-ACA acylases, and the putative diester hydrolase NonD of Streptomyces griseus (all hydrolases). This family shows extensive, low-level similarity to a family of xaa-pro dipeptidyl-peptidases, and local similarity by PSI-BLAST to many other hydrolases.
Probab=99.64 E-value=7.4e-15 Score=161.74 Aligned_cols=131 Identities=20% Similarity=0.294 Sum_probs=99.9
Q ss_pred EcCCCceEEEEEEcCCCCCCCCCCCccEEEEEcCCCCcCcccCCcccCCCCccCCCCchHHHHHHhCCeEEEEcCCCCCC
Q 004475 487 QRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGPSIPII 566 (751)
Q Consensus 487 ~~~~~~~i~~~~~~P~~~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~v~~~~~~~~~ 566 (751)
+..+|.++.+.+|.|.+ .+++|+||++||.+..... ...+.......|+++||+|++ .+.+
T Consensus 2 ~~~DG~~L~~~~~~P~~-----~~~~P~Il~~~gyg~~~~~-----------~~~~~~~~~~~l~~~Gy~vv~---~D~R 62 (550)
T TIGR00976 2 PMRDGTRLAIDVYRPAG-----GGPVPVILSRTPYGKDAGL-----------RWGLDKTEPAWFVAQGYAVVI---QDTR 62 (550)
T ss_pred cCCCCCEEEEEEEecCC-----CCCCCEEEEecCCCCchhh-----------ccccccccHHHHHhCCcEEEE---Eecc
Confidence 45689999999999975 2358999999996521100 001111234578899999999 5666
Q ss_pred CCCCCCCCchhH-HHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEccCCCC
Q 004475 567 GEGDKLPNDRFV-EQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGSYN 637 (751)
Q Consensus 567 g~g~~~~~~~~~-~~~~~d~~~~v~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~~d 637 (751)
|+|.+....... ....+|+.++++|+.++++.+ .+|+++|+|+||.+++.+|..+|+.++++|+.++..+
T Consensus 63 G~g~S~g~~~~~~~~~~~D~~~~i~~l~~q~~~~-~~v~~~G~S~GG~~a~~~a~~~~~~l~aiv~~~~~~d 133 (550)
T TIGR00976 63 GRGASEGEFDLLGSDEAADGYDLVDWIAKQPWCD-GNVGMLGVSYLAVTQLLAAVLQPPALRAIAPQEGVWD 133 (550)
T ss_pred ccccCCCceEecCcccchHHHHHHHHHHhCCCCC-CcEEEEEeChHHHHHHHHhccCCCceeEEeecCcccc
Confidence 777765432222 567899999999999988766 6999999999999999999999999999999888765
No 68
>TIGR03611 RutD pyrimidine utilization protein D. This protein is observed in operons extremely similar to that characterized in E. coli K-12 responsible for the import and catabolism of pyrimidines, primarily uracil. This protein is a member of the hydrolase, alpha/beta fold family defined by pfam00067.
Probab=99.64 E-value=5.7e-15 Score=147.76 Aligned_cols=194 Identities=18% Similarity=0.202 Sum_probs=125.0
Q ss_pred ccEEEEEcCCCCcCcccCCcccCCCCccCCCCchHHHHHHhCCeEEEEcCCCCCCCCCCCCCCc---hhHHHHHHHHHHH
Q 004475 512 LPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGPSIPIIGEGDKLPND---RFVEQLVSSAEAA 588 (751)
Q Consensus 512 ~P~vv~~HGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~v~~~~~~~~~g~g~~~~~~---~~~~~~~~d~~~~ 588 (751)
.|+||++||.+. +... +........+||.|++ ++.+|+|.+.... ....+..+++.+.
T Consensus 13 ~~~iv~lhG~~~-----------~~~~-----~~~~~~~l~~~~~vi~---~D~~G~G~S~~~~~~~~~~~~~~~~~~~~ 73 (257)
T TIGR03611 13 APVVVLSSGLGG-----------SGSY-----WAPQLDVLTQRFHVVT---YDHRGTGRSPGELPPGYSIAHMADDVLQL 73 (257)
T ss_pred CCEEEEEcCCCc-----------chhH-----HHHHHHHHHhccEEEE---EcCCCCCCCCCCCcccCCHHHHHHHHHHH
Confidence 589999999641 1111 1222334457899999 5666777764321 2234445555555
Q ss_pred HHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEccCCCCCCCCccC-c----------cc-----c----
Q 004475 589 VEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGSYNKTLTPFG-F----------QT-----E---- 648 (751)
Q Consensus 589 v~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~~d~~~~~~~-~----------~~-----~---- 648 (751)
++.+ +..+++++||||||.+|+.++.++|+.++++|++++.......... + .. .
T Consensus 74 i~~~------~~~~~~l~G~S~Gg~~a~~~a~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (257)
T TIGR03611 74 LDAL------NIERFHFVGHALGGLIGLQLALRYPERLLSLVLINAWSRPDPHTRRCFDVRIALLQHAGPEAYVHAQALF 147 (257)
T ss_pred HHHh------CCCcEEEEEechhHHHHHHHHHHChHHhHHheeecCCCCCChhHHHHHHHHHHHHhccCcchhhhhhhhh
Confidence 5443 3468999999999999999999999999999988875432100000 0 00 0
Q ss_pred -cccch--------------------------hhHHHHHhcCcccccCCCCCCEEEEEcCCCCCCCCChHHHHHHHHHHH
Q 004475 649 -FRTLW--------------------------EATNVYIEMSPITHANKIKKPILIIHGEVDDKVGLFPMQAERFFDALK 701 (751)
Q Consensus 649 -~~~~~--------------------------~~~~~~~~~~~~~~~~~~~~P~li~~G~~D~~vp~~~~~~~~~~~~l~ 701 (751)
....| .....+...+....+.++++|+|+++|++|..+| +..++++++.+.
T Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~P~l~i~g~~D~~~~--~~~~~~~~~~~~ 225 (257)
T TIGR03611 148 LYPADWISENAARLAADEAHALAHFPGKANVLRRINALEAFDVSARLDRIQHPVLLIANRDDMLVP--YTQSLRLAAALP 225 (257)
T ss_pred hccccHhhccchhhhhhhhhcccccCccHHHHHHHHHHHcCCcHHHhcccCccEEEEecCcCcccC--HHHHHHHHHhcC
Confidence 00000 0000111122234566789999999999999998 888887776653
Q ss_pred hCCCcEEEEEeCCCCCcCCccccHHHHHHHHHHHHH
Q 004475 702 GHGALSRLVLLPFEHHVYAARENVMHVIWETDRWLQ 737 (751)
Q Consensus 702 ~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~fl~ 737 (751)
..++++++++||.+. .+....+.+.+.+||+
T Consensus 226 ----~~~~~~~~~~gH~~~-~~~~~~~~~~i~~fl~ 256 (257)
T TIGR03611 226 ----NAQLKLLPYGGHASN-VTDPETFNRALLDFLK 256 (257)
T ss_pred ----CceEEEECCCCCCcc-ccCHHHHHHHHHHHhc
Confidence 357889999999976 5677788889999985
No 69
>PF07859 Abhydrolase_3: alpha/beta hydrolase fold A web page of Esterases and alpha/beta hydrolases.; InterPro: IPR013094 The alpha/beta hydrolase fold [] is common to a number of hydrolytic enzymes of widely differing phylogenetic origin and catalytic function. The core of each enzyme is an alpha/beta-sheet (rather than a barrel), containing 8 strands connected by helices []. The enzymes are believed to have diverged from a common ancestor, preserving the arrangement of the catalytic residues. All have a catalytic triad, the elements of which are borne on loops, which are the best conserved structural features of the fold. Esterase (EST) from Pseudomonas putida is a member of the alpha/beta hydrolase fold superfamily of enzymes []. In most of the family members the beta-strands are parallels, but some have an inversion of the first strands, which gives it an antiparallel orientation. The catalytic triad residues are presented on loops. One of these is the nucleophile elbow and is the most conserved feature of the fold. Some other members lack one or all of the catalytic residues. Some members are therefore inactive but others are involved in surface recognition. The ESTHER database [] gathers and annotates all the published information related to gene and protein sequences of this superfamily []. This entry represents the catalytic domain fold-3 of alpha/beta hydrolase. ; GO: 0016787 hydrolase activity, 0008152 metabolic process; PDB: 3D7R_B 2C7B_B 3ZWQ_B 2YH2_B 3BXP_A 3D3N_A 1LZK_A 1LZL_A 2O7V_A 2O7R_A ....
Probab=99.63 E-value=1.7e-15 Score=146.18 Aligned_cols=181 Identities=20% Similarity=0.167 Sum_probs=121.0
Q ss_pred EEEEcCCCCcCcccCCcccCCCCccCCCCchHHHHHHh-CCeEEEEcCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHHH
Q 004475 515 LFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLA-RRFAVLAGPSIPIIGEGDKLPNDRFVEQLVSSAEAAVEEVV 593 (751)
Q Consensus 515 vv~~HGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~G~~v~~~~~~~~~g~g~~~~~~~~~~~~~~d~~~~v~~l~ 593 (751)
||++|||||..++... ....+..+++ +|++|+.++|+-. +....+..++|+.++++|+.
T Consensus 1 v~~~HGGg~~~g~~~~------------~~~~~~~la~~~g~~v~~~~Yrl~--------p~~~~p~~~~D~~~a~~~l~ 60 (211)
T PF07859_consen 1 VVYIHGGGWVMGSKES------------HWPFAARLAAERGFVVVSIDYRLA--------PEAPFPAALEDVKAAYRWLL 60 (211)
T ss_dssp EEEE--STTTSCGTTT------------HHHHHHHHHHHHTSEEEEEE---T--------TTSSTTHHHHHHHHHHHHHH
T ss_pred CEEECCcccccCChHH------------HHHHHHHHHhhccEEEEEeecccc--------ccccccccccccccceeeec
Confidence 7999999986543321 1244556665 8999999777532 12234677999999999999
Q ss_pred Hc---CCCCCCcEEEEEeChHHHHHHHHHHhCCC----ceeEEEEccCCCCC-CCCccCcc----cccccchh--h----
Q 004475 594 RR---GVADPSRIAVGGHSYGAFMTAHLLAHAPH----LFCCGIARSGSYNK-TLTPFGFQ----TEFRTLWE--A---- 655 (751)
Q Consensus 594 ~~---~~id~~~i~l~G~S~GG~~a~~~a~~~p~----~~~~~v~~~~~~d~-~~~~~~~~----~~~~~~~~--~---- 655 (751)
++ ..+|+++|+|+|+|.||++|+.++....+ .++++++++|..|. ........ ......+. .
T Consensus 61 ~~~~~~~~d~~~i~l~G~SAGg~la~~~~~~~~~~~~~~~~~~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (211)
T PF07859_consen 61 KNADKLGIDPERIVLIGDSAGGHLALSLALRARDRGLPKPKGIILISPWTDLQDFDGPSYDDSNENKDDPFLPAPKIDWF 140 (211)
T ss_dssp HTHHHHTEEEEEEEEEEETHHHHHHHHHHHHHHHTTTCHESEEEEESCHSSTSTSSCHHHHHHHHHSTTSSSBHHHHHHH
T ss_pred cccccccccccceEEeecccccchhhhhhhhhhhhcccchhhhhcccccccchhcccccccccccccccccccccccccc
Confidence 87 34788999999999999999999975432 48999999998775 21111110 00000110 0
Q ss_pred HHHHH--------hcCcccccCCC--CCCEEEEEcCCCCCCCCChHHHHHHHHHHHhCCCcEEEEEeCCCCCcCC
Q 004475 656 TNVYI--------EMSPITHANKI--KKPILIIHGEVDDKVGLFPMQAERFFDALKGHGALSRLVLLPFEHHVYA 720 (751)
Q Consensus 656 ~~~~~--------~~~~~~~~~~~--~~P~li~~G~~D~~vp~~~~~~~~~~~~l~~~~~~~~~~~~~~~~H~~~ 720 (751)
...+. ..+|+.. ..+ -+|+++++|+.|.+ ..++..++++|++.|++++++++++..|.|.
T Consensus 141 ~~~~~~~~~~~~~~~sp~~~-~~~~~~Pp~~i~~g~~D~l----~~~~~~~~~~L~~~gv~v~~~~~~g~~H~f~ 210 (211)
T PF07859_consen 141 WKLYLPGSDRDDPLASPLNA-SDLKGLPPTLIIHGEDDVL----VDDSLRFAEKLKKAGVDVELHVYPGMPHGFF 210 (211)
T ss_dssp HHHHHSTGGTTSTTTSGGGS-SCCTTCHEEEEEEETTSTT----HHHHHHHHHHHHHTT-EEEEEEETTEETTGG
T ss_pred cccccccccccccccccccc-cccccCCCeeeeccccccc----hHHHHHHHHHHHHCCCCEEEEEECCCeEEee
Confidence 01111 2234433 122 36899999999987 5678999999999999999999999999874
No 70
>TIGR03100 hydr1_PEP hydrolase, ortholog 1, exosortase system type 1 associated. This group of proteins are members of the alpha/beta hydrolase superfamily. These proteins are generally found in genomes containing the exosortase/PEP-CTERM protein expoert system, specifically the type 1 variant of this system described by the Genome Property GenProp0652. When found in this context they are invariably present in the vicinity of a second, relatively unrelated enzyme (ortholog 2, TIGR03101) of the same superfamily.
Probab=99.62 E-value=2.6e-14 Score=142.97 Aligned_cols=229 Identities=14% Similarity=0.095 Sum_probs=143.8
Q ss_pred EEEEEEcCCCceEEEEEEcCCCCCCCCCCCccEEEEEcCCCCcCcccCCcccCCCCccCCCCchHHHHHHhCCeEEEEcC
Q 004475 482 EMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGP 561 (751)
Q Consensus 482 e~i~~~~~~~~~i~~~~~~P~~~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~v~~~~ 561 (751)
+.+.++. ++..+.++++.|.+. ..+.||++|||+... .+. + .....++..|+++||.|++
T Consensus 3 ~~~~~~~-~~~~l~g~~~~p~~~------~~~~vv~i~gg~~~~-------~g~---~-~~~~~la~~l~~~G~~v~~-- 62 (274)
T TIGR03100 3 RALTFSC-EGETLVGVLHIPGAS------HTTGVLIVVGGPQYR-------VGS---H-RQFVLLARRLAEAGFPVLR-- 62 (274)
T ss_pred eeEEEEc-CCcEEEEEEEcCCCC------CCCeEEEEeCCcccc-------CCc---h-hHHHHHHHHHHHCCCEEEE--
Confidence 4577764 567899999999652 135677777753100 000 0 0112346678889999999
Q ss_pred CCCCCCCCCCCCCchhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEccCCCCCCCC
Q 004475 562 SIPIIGEGDKLPNDRFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGSYNKTLT 641 (751)
Q Consensus 562 ~~~~~g~g~~~~~~~~~~~~~~d~~~~v~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~~d~~~~ 641 (751)
++.+|+|.+...........+|+.++++++++... ..++|+++|||+||.+++.++... .+++++|+++|.+.....
T Consensus 63 -~Dl~G~G~S~~~~~~~~~~~~d~~~~~~~l~~~~~-g~~~i~l~G~S~Gg~~a~~~a~~~-~~v~~lil~~p~~~~~~~ 139 (274)
T TIGR03100 63 -FDYRGMGDSEGENLGFEGIDADIAAAIDAFREAAP-HLRRIVAWGLCDAASAALLYAPAD-LRVAGLVLLNPWVRTEAA 139 (274)
T ss_pred -eCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhhCC-CCCcEEEEEECHHHHHHHHHhhhC-CCccEEEEECCccCCccc
Confidence 66678887754433456678999999999987521 235799999999999999887664 689999999987542110
Q ss_pred ccC--c----c--cccccchhh-----------HHHHHh----c---Cc-----------ccccCCCCCCEEEEEcCCCC
Q 004475 642 PFG--F----Q--TEFRTLWEA-----------TNVYIE----M---SP-----------ITHANKIKKPILIIHGEVDD 684 (751)
Q Consensus 642 ~~~--~----~--~~~~~~~~~-----------~~~~~~----~---~~-----------~~~~~~~~~P~li~~G~~D~ 684 (751)
... . . ......|.. ...+.. . .. ...+.++++|+|+++|+.|.
T Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~P~ll~~g~~D~ 219 (274)
T TIGR03100 140 QAASRIRHYYLGQLLSADFWRKLLSGEVNLGSSLRGLGDALLKARQKGDEVAHGGLAERMKAGLERFQGPVLFILSGNDL 219 (274)
T ss_pred chHHHHHHHHHHHHhChHHHHHhcCCCccHHHHHHHHHHHHHhhhhcCCCcccchHHHHHHHHHHhcCCcEEEEEcCcch
Confidence 000 0 0 000011110 000110 1 00 12244678999999999998
Q ss_pred CCCCChHHH-----HHHHHHHHhCCCcEEEEEeCCCCCcCCccccHHHHHHHHHHHHH
Q 004475 685 KVGLFPMQA-----ERFFDALKGHGALSRLVLLPFEHHVYAARENVMHVIWETDRWLQ 737 (751)
Q Consensus 685 ~vp~~~~~~-----~~~~~~l~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~fl~ 737 (751)
..+ .... ....+.+.. ..+++.++++++|.+.......++...+.+||+
T Consensus 220 ~~~--~~~~~~~~~~~~~~~l~~--~~v~~~~~~~~~H~l~~e~~~~~v~~~i~~wL~ 273 (274)
T TIGR03100 220 TAQ--EFADSVLGEPAWRGALED--PGIERVEIDGADHTFSDRVWREWVAARTTEWLR 273 (274)
T ss_pred hHH--HHHHHhccChhhHHHhhc--CCeEEEecCCCCcccccHHHHHHHHHHHHHHHh
Confidence 643 1110 122222221 467899999999988767777889999999995
No 71
>PRK00870 haloalkane dehalogenase; Provisional
Probab=99.62 E-value=3e-14 Score=145.72 Aligned_cols=225 Identities=15% Similarity=0.100 Sum_probs=134.8
Q ss_pred ceEEEEEEcCCCceEEEEEEcCCCCCCCCCCCccEEEEEcCCCCcCcccCCcccCCCCccCCCCchHHHHHHhCCeEEEE
Q 004475 480 QKEMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLA 559 (751)
Q Consensus 480 ~~e~i~~~~~~~~~i~~~~~~P~~~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~v~~ 559 (751)
....+.+...+|..+.-.+. ..+ ....|.||++||.+. ....| ......|.++||.|++
T Consensus 20 ~~~~~~~~~~~~~~~~i~y~-~~G-----~~~~~~lvliHG~~~--------------~~~~w-~~~~~~L~~~gy~vi~ 78 (302)
T PRK00870 20 APHYVDVDDGDGGPLRMHYV-DEG-----PADGPPVLLLHGEPS--------------WSYLY-RKMIPILAAAGHRVIA 78 (302)
T ss_pred CceeEeecCCCCceEEEEEE-ecC-----CCCCCEEEEECCCCC--------------chhhH-HHHHHHHHhCCCEEEE
Confidence 45556666545554332222 222 001478999999531 01111 1334456678999999
Q ss_pred cCCCCCCCCCCCCCCc----hhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEccCC
Q 004475 560 GPSIPIIGEGDKLPND----RFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGS 635 (751)
Q Consensus 560 ~~~~~~~g~g~~~~~~----~~~~~~~~d~~~~v~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~ 635 (751)
.+.+|+|.+.... .......+|+.+.++.+ +.+++.++||||||.+|+.++.++|++++++|++++.
T Consensus 79 ---~Dl~G~G~S~~~~~~~~~~~~~~a~~l~~~l~~l------~~~~v~lvGhS~Gg~ia~~~a~~~p~~v~~lvl~~~~ 149 (302)
T PRK00870 79 ---PDLIGFGRSDKPTRREDYTYARHVEWMRSWFEQL------DLTDVTLVCQDWGGLIGLRLAAEHPDRFARLVVANTG 149 (302)
T ss_pred ---ECCCCCCCCCCCCCcccCCHHHHHHHHHHHHHHc------CCCCEEEEEEChHHHHHHHHHHhChhheeEEEEeCCC
Confidence 6677888774321 12345555555555443 3358999999999999999999999999999988763
Q ss_pred CCCCCC--c-----cCc---ccc----------cccch---hhHHHH----------------Hhc---C----------
Q 004475 636 YNKTLT--P-----FGF---QTE----------FRTLW---EATNVY----------------IEM---S---------- 663 (751)
Q Consensus 636 ~d~~~~--~-----~~~---~~~----------~~~~~---~~~~~~----------------~~~---~---------- 663 (751)
...... . +.. ... ....+ .....+ ... .
T Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (302)
T PRK00870 150 LPTGDGPMPDAFWAWRAFSQYSPVLPVGRLVNGGTVRDLSDAVRAAYDAPFPDESYKAGARAFPLLVPTSPDDPAVAANR 229 (302)
T ss_pred CCCccccchHHHhhhhcccccCchhhHHHHhhccccccCCHHHHHHhhcccCChhhhcchhhhhhcCCCCCCCcchHHHH
Confidence 211000 0 000 000 00000 000000 000 0
Q ss_pred -cccccCCCCCCEEEEEcCCCCCCCCChHHHHHHHHHHHhCCCcEEEEEeCCCCCcCCccccHHHHHHHHHHHHHHH
Q 004475 664 -PITHANKIKKPILIIHGEVDDKVGLFPMQAERFFDALKGHGALSRLVLLPFEHHVYAARENVMHVIWETDRWLQKY 739 (751)
Q Consensus 664 -~~~~~~~~~~P~li~~G~~D~~vp~~~~~~~~~~~~l~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~fl~~~ 739 (751)
....+.++++|+|+++|++|+.+| ... +.+.+.+... ..+.+.++++++|... .+..+.+...+.+||+.+
T Consensus 230 ~~~~~l~~i~~P~lii~G~~D~~~~--~~~-~~~~~~~~~~-~~~~~~~i~~~gH~~~-~e~p~~~~~~l~~fl~~~ 301 (302)
T PRK00870 230 AAWAVLERWDKPFLTAFSDSDPITG--GGD-AILQKRIPGA-AGQPHPTIKGAGHFLQ-EDSGEELAEAVLEFIRAT 301 (302)
T ss_pred HHHHhhhcCCCceEEEecCCCCccc--Cch-HHHHhhcccc-cccceeeecCCCccch-hhChHHHHHHHHHHHhcC
Confidence 012346789999999999999998 554 6666655432 1234789999999976 677788999999999764
No 72
>PLN02511 hydrolase
Probab=99.62 E-value=2.3e-14 Score=150.35 Aligned_cols=238 Identities=13% Similarity=0.119 Sum_probs=145.6
Q ss_pred ceEEEEEEcCCCceEEEEEEcCCCCCCCCCCCccEEEEEcCCCCcCcccCCcccCCCCccCCCCchHHHHHHhCCeEEEE
Q 004475 480 QKEMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLA 559 (751)
Q Consensus 480 ~~e~i~~~~~~~~~i~~~~~~P~~~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~v~~ 559 (751)
..++..+...+|..+...++.+..... ....|+||++||.+ ++.. ..+.......+.++||.|++
T Consensus 70 ~~~re~l~~~DG~~~~ldw~~~~~~~~--~~~~p~vvllHG~~-----------g~s~--~~y~~~~~~~~~~~g~~vv~ 134 (388)
T PLN02511 70 RYRRECLRTPDGGAVALDWVSGDDRAL--PADAPVLILLPGLT-----------GGSD--DSYVRHMLLRARSKGWRVVV 134 (388)
T ss_pred ceeEEEEECCCCCEEEEEecCcccccC--CCCCCEEEEECCCC-----------CCCC--CHHHHHHHHHHHHCCCEEEE
Confidence 334445556677777665554322111 11368999999953 1111 11111234456789999999
Q ss_pred cCCCCCCCCCCCCC--CchhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCc--eeEEEEccCC
Q 004475 560 GPSIPIIGEGDKLP--NDRFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHL--FCCGIARSGS 635 (751)
Q Consensus 560 ~~~~~~~g~g~~~~--~~~~~~~~~~d~~~~v~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~p~~--~~~~v~~~~~ 635 (751)
.+.+|+|.+.. ...+.....+|+.++++++..+. ...++.++||||||.+++.++.++|+. +.+++++++.
T Consensus 135 ---~d~rG~G~s~~~~~~~~~~~~~~Dl~~~i~~l~~~~--~~~~~~lvG~SlGg~i~~~yl~~~~~~~~v~~~v~is~p 209 (388)
T PLN02511 135 ---FNSRGCADSPVTTPQFYSASFTGDLRQVVDHVAGRY--PSANLYAAGWSLGANILVNYLGEEGENCPLSGAVSLCNP 209 (388)
T ss_pred ---EecCCCCCCCCCCcCEEcCCchHHHHHHHHHHHHHC--CCCCEEEEEechhHHHHHHHHHhcCCCCCceEEEEECCC
Confidence 56667777642 22233456789999999998763 235899999999999999999999876 7888877765
Q ss_pred CCCCCCc----cC--------cc---------cc---------c--------ccc--h-----------hh-HHHHHhcC
Q 004475 636 YNKTLTP----FG--------FQ---------TE---------F--------RTL--W-----------EA-TNVYIEMS 663 (751)
Q Consensus 636 ~d~~~~~----~~--------~~---------~~---------~--------~~~--~-----------~~-~~~~~~~~ 663 (751)
.+..... .. +. .. . ... + .. .+.|...+
T Consensus 210 ~~l~~~~~~~~~~~~~~y~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fd~~~t~~~~gf~~~~~yy~~~s 289 (388)
T PLN02511 210 FDLVIADEDFHKGFNNVYDKALAKALRKIFAKHALLFEGLGGEYNIPLVANAKTVRDFDDGLTRVSFGFKSVDAYYSNSS 289 (388)
T ss_pred cCHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHhhCCCccCHHHHHhCCCHHHHHHhhhhhcCCCCCHHHHHHHcC
Confidence 5421000 00 00 00 0 000 0 00 01223344
Q ss_pred cccccCCCCCCEEEEEcCCCCCCCCChHHHHHHHHHHHhCCCcEEEEEeCCCCCcCCccccH-----HHHHHHHHHHHHH
Q 004475 664 PITHANKIKKPILIIHGEVDDKVGLFPMQAERFFDALKGHGALSRLVLLPFEHHVYAARENV-----MHVIWETDRWLQK 738 (751)
Q Consensus 664 ~~~~~~~~~~P~li~~G~~D~~vp~~~~~~~~~~~~l~~~~~~~~~~~~~~~~H~~~~~~~~-----~~~~~~~~~fl~~ 738 (751)
....+.++++|+|+++|++|+++| ...... .+......+++++++++||........ .-..+.+.+||..
T Consensus 290 ~~~~L~~I~vPtLiI~g~dDpi~p--~~~~~~---~~~~~~p~~~l~~~~~gGH~~~~E~p~~~~~~~w~~~~i~~Fl~~ 364 (388)
T PLN02511 290 SSDSIKHVRVPLLCIQAANDPIAP--ARGIPR---EDIKANPNCLLIVTPSGGHLGWVAGPEAPFGAPWTDPVVMEFLEA 364 (388)
T ss_pred chhhhccCCCCeEEEEcCCCCcCC--cccCcH---hHHhcCCCEEEEECCCcceeccccCCCCCCCCccHHHHHHHHHHH
Confidence 555678899999999999999998 543211 122233568999999999976532211 1246778899987
Q ss_pred HhcC
Q 004475 739 YCLS 742 (751)
Q Consensus 739 ~l~~ 742 (751)
....
T Consensus 365 ~~~~ 368 (388)
T PLN02511 365 LEEG 368 (388)
T ss_pred HHHh
Confidence 7653
No 73
>COG0400 Predicted esterase [General function prediction only]
Probab=99.62 E-value=1.3e-14 Score=134.23 Aligned_cols=127 Identities=25% Similarity=0.234 Sum_probs=104.0
Q ss_pred HHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEccCCCCCCCCccCcccccccchhhHHHHHh
Q 004475 582 VSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGSYNKTLTPFGFQTEFRTLWEATNVYIE 661 (751)
Q Consensus 582 ~~d~~~~v~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 661 (751)
.+.+.+.++.+.++..+|.+|++++|+|.||++++.+..++|+.++++|+++|..-.....
T Consensus 80 ~~~~~~~l~~~~~~~gi~~~~ii~~GfSqGA~ial~~~l~~~~~~~~ail~~g~~~~~~~~------------------- 140 (207)
T COG0400 80 TEKLAEFLEELAEEYGIDSSRIILIGFSQGANIALSLGLTLPGLFAGAILFSGMLPLEPEL------------------- 140 (207)
T ss_pred HHHHHHHHHHHHHHhCCChhheEEEecChHHHHHHHHHHhCchhhccchhcCCcCCCCCcc-------------------
Confidence 4555566666666777999999999999999999999999999999999999975432110
Q ss_pred cCcccccCCCCCCEEEEEcCCCCCCCCChHHHHHHHHHHHhCCCcEEEEEeCCCCCcCCccccHHHHHHHHHHHHHHHh
Q 004475 662 MSPITHANKIKKPILIIHGEVDDKVGLFPMQAERFFDALKGHGALSRLVLLPFEHHVYAARENVMHVIWETDRWLQKYC 740 (751)
Q Consensus 662 ~~~~~~~~~~~~P~li~~G~~D~~vp~~~~~~~~~~~~l~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~fl~~~l 740 (751)
....-.+|+|++||+.|++|| ...+.++.+.|++.|.+++++.++ .||.+.. +.++.+.+|+...+
T Consensus 141 -----~~~~~~~pill~hG~~Dpvvp--~~~~~~l~~~l~~~g~~v~~~~~~-~GH~i~~-----e~~~~~~~wl~~~~ 206 (207)
T COG0400 141 -----LPDLAGTPILLSHGTEDPVVP--LALAEALAEYLTASGADVEVRWHE-GGHEIPP-----EELEAARSWLANTL 206 (207)
T ss_pred -----ccccCCCeEEEeccCcCCccC--HHHHHHHHHHHHHcCCCEEEEEec-CCCcCCH-----HHHHHHHHHHHhcc
Confidence 011235899999999999999 999999999999999999999999 7899853 56677788887654
No 74
>PF12695 Abhydrolase_5: Alpha/beta hydrolase family; PDB: 3D0K_B 2I3D_B 3DOH_B 3DOI_B 3PFB_A 3S2Z_B 3PFC_A 3QM1_A 3PF8_B 3PF9_A ....
Probab=99.62 E-value=1e-14 Score=131.55 Aligned_cols=145 Identities=26% Similarity=0.311 Sum_probs=106.8
Q ss_pred EEEEEcCCCCcCcccCCcccCCCCccCCCCchHHHHHHhCCeEEEEcCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHHH
Q 004475 514 CLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGPSIPIIGEGDKLPNDRFVEQLVSSAEAAVEEVV 593 (751)
Q Consensus 514 ~vv~~HGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~v~~~~~~~~~g~g~~~~~~~~~~~~~~d~~~~v~~l~ 593 (751)
+||++||.+. +... ....+..|+++||.|+.+ ++++.+.+ ....++.++++++.
T Consensus 1 ~vv~~HG~~~-----------~~~~----~~~~~~~l~~~G~~v~~~---~~~~~~~~--------~~~~~~~~~~~~~~ 54 (145)
T PF12695_consen 1 VVVLLHGWGG-----------SRRD----YQPLAEALAEQGYAVVAF---DYPGHGDS--------DGADAVERVLADIR 54 (145)
T ss_dssp EEEEECTTTT-----------TTHH----HHHHHHHHHHTTEEEEEE---SCTTSTTS--------HHSHHHHHHHHHHH
T ss_pred CEEEECCCCC-----------CHHH----HHHHHHHHHHCCCEEEEE---ecCCCCcc--------chhHHHHHHHHHHH
Confidence 5899999742 1111 125677889999999994 44555543 12235556666654
Q ss_pred HcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEccCCCCCCCCccCcccccccchhhHHHHHhcCcccccCCCCC
Q 004475 594 RRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGSYNKTLTPFGFQTEFRTLWEATNVYIEMSPITHANKIKK 673 (751)
Q Consensus 594 ~~~~id~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 673 (751)
+... +.++|+++|||+||.+++.++.++ ..++++|+++|..+ ...+.+.+.
T Consensus 55 ~~~~-~~~~i~l~G~S~Gg~~a~~~~~~~-~~v~~~v~~~~~~~---------------------------~~~~~~~~~ 105 (145)
T PF12695_consen 55 AGYP-DPDRIILIGHSMGGAIAANLAARN-PRVKAVVLLSPYPD---------------------------SEDLAKIRI 105 (145)
T ss_dssp HHHC-TCCEEEEEEETHHHHHHHHHHHHS-TTESEEEEESESSG---------------------------CHHHTTTTS
T ss_pred hhcC-CCCcEEEEEEccCcHHHHHHhhhc-cceeEEEEecCccc---------------------------hhhhhccCC
Confidence 3222 789999999999999999999998 78999999999310 012445678
Q ss_pred CEEEEEcCCCCCCCCChHHHHHHHHHHHhCCCcEEEEEeCCCCCc
Q 004475 674 PILIIHGEVDDKVGLFPMQAERFFDALKGHGALSRLVLLPFEHHV 718 (751)
Q Consensus 674 P~li~~G~~D~~vp~~~~~~~~~~~~l~~~~~~~~~~~~~~~~H~ 718 (751)
|+|+++|++|..+| .++.++++++++ .+.+++++++++|.
T Consensus 106 pv~~i~g~~D~~~~--~~~~~~~~~~~~---~~~~~~~i~g~~H~ 145 (145)
T PF12695_consen 106 PVLFIHGENDPLVP--PEQVRRLYEALP---GPKELYIIPGAGHF 145 (145)
T ss_dssp EEEEEEETT-SSSH--HHHHHHHHHHHC---SSEEEEEETTS-TT
T ss_pred cEEEEEECCCCcCC--HHHHHHHHHHcC---CCcEEEEeCCCcCc
Confidence 99999999999998 899999988886 56899999999995
No 75
>KOG4178 consensus Soluble epoxide hydrolase [Lipid transport and metabolism]
Probab=99.61 E-value=1.2e-13 Score=132.64 Aligned_cols=199 Identities=17% Similarity=0.190 Sum_probs=133.9
Q ss_pred ccEEEEEcCCCCcCcccCCcccCCCCccCCCCchHHHHHHhCCeEEEEcCCCCCCCCCCCCCCch----hHHHHHHHHHH
Q 004475 512 LPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGPSIPIIGEGDKLPNDR----FVEQLVSSAEA 587 (751)
Q Consensus 512 ~P~vv~~HGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~v~~~~~~~~~g~g~~~~~~~----~~~~~~~d~~~ 587 (751)
.|+|+++||-+ ..++.|. .+...|+++||.|++ .|.+|+|.+..+.. ....+..|+..
T Consensus 44 gP~illlHGfP--------------e~wyswr-~q~~~la~~~~rviA---~DlrGyG~Sd~P~~~~~Yt~~~l~~di~~ 105 (322)
T KOG4178|consen 44 GPIVLLLHGFP--------------ESWYSWR-HQIPGLASRGYRVIA---PDLRGYGFSDAPPHISEYTIDELVGDIVA 105 (322)
T ss_pred CCEEEEEccCC--------------ccchhhh-hhhhhhhhcceEEEe---cCCCCCCCCCCCCCcceeeHHHHHHHHHH
Confidence 69999999943 5555554 344578899999999 78889998866544 24456777777
Q ss_pred HHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEccCCCC-CCCCc-----------c---Ccc-----c
Q 004475 588 AVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGSYN-KTLTP-----------F---GFQ-----T 647 (751)
Q Consensus 588 ~v~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~~d-~~~~~-----------~---~~~-----~ 647 (751)
.++.|. -+|+.++||+|||.+|+.++..+|+++.+.|+.+.... ....+ + .+. .
T Consensus 106 lld~Lg------~~k~~lvgHDwGaivaw~la~~~Perv~~lv~~nv~~~~p~~~~~~~~~~~f~~~~y~~~fQ~~~~~E 179 (322)
T KOG4178|consen 106 LLDHLG------LKKAFLVGHDWGAIVAWRLALFYPERVDGLVTLNVPFPNPKLKPLDSSKAIFGKSYYICLFQEPGKPE 179 (322)
T ss_pred HHHHhc------cceeEEEeccchhHHHHHHHHhChhhcceEEEecCCCCCcccchhhhhccccCccceeEeccccCcch
Confidence 777774 36899999999999999999999999999998875432 00000 0 000 0
Q ss_pred ------------------------------ccccch---hhHHH-------------------HHhcCc--ccccCCCCC
Q 004475 648 ------------------------------EFRTLW---EATNV-------------------YIEMSP--ITHANKIKK 673 (751)
Q Consensus 648 ------------------------------~~~~~~---~~~~~-------------------~~~~~~--~~~~~~~~~ 673 (751)
.....| ++.+. +..+.+ .....++++
T Consensus 180 ~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~t~edi~~~~~~f~~~g~~gplNyyrn~~r~w~a~~~~~~~i~i 259 (322)
T KOG4178|consen 180 TELSKDDTEMLVKTFRTRKTPGPLIVPKQPNENPLWLTEEDIAFYVSKFQIDGFTGPLNYYRNFRRNWEAAPWALAKITI 259 (322)
T ss_pred hhhccchhHHhHHhhhccccCCccccCCCCCCccchhhHHHHHHHHhccccccccccchhhHHHhhCchhcccccccccc
Confidence 000011 11111 111111 223457889
Q ss_pred CEEEEEcCCCCCCCCChHHHHHHHHHHHhCCCcEEEEEeCCCCCcCCccccHHHHHHHHHHHHHHH
Q 004475 674 PILIIHGEVDDKVGLFPMQAERFFDALKGHGALSRLVLLPFEHHVYAARENVMHVIWETDRWLQKY 739 (751)
Q Consensus 674 P~li~~G~~D~~vp~~~~~~~~~~~~l~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~fl~~~ 739 (751)
|++++.|+.|.+.+ ...-.+.+++.-. ...+.++++++||... .+..+++.+.++.||++.
T Consensus 260 Pv~fi~G~~D~v~~--~p~~~~~~rk~vp--~l~~~vv~~~~gH~vq-qe~p~~v~~~i~~f~~~~ 320 (322)
T KOG4178|consen 260 PVLFIWGDLDPVLP--YPIFGELYRKDVP--RLTERVVIEGIGHFVQ-QEKPQEVNQAILGFINSF 320 (322)
T ss_pred ceEEEEecCccccc--chhHHHHHHHhhc--cccceEEecCCccccc-ccCHHHHHHHHHHHHHhh
Confidence 99999999999988 4432333333221 1236788999999887 677889999999999875
No 76
>TIGR03343 biphenyl_bphD 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolase. Members of this family are 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolase, or HOPD hydrolase, the BphD protein of biphenyl degradation. BphD acts on the product of ring meta-cleavage by BphC. Many species carrying bphC and bphD are capable of degrading polychlorinated biphenyls as well as biphenyl itself.
Probab=99.61 E-value=2.1e-14 Score=145.72 Aligned_cols=198 Identities=12% Similarity=0.025 Sum_probs=124.6
Q ss_pred ccEEEEEcCCCCcCcccCCcccCCCCccCCCCchHHHHHHhCCeEEEEcCCCCCCCCCCCCCCch---hHHHHHHHHHHH
Q 004475 512 LPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGPSIPIIGEGDKLPNDR---FVEQLVSSAEAA 588 (751)
Q Consensus 512 ~P~vv~~HGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~v~~~~~~~~~g~g~~~~~~~---~~~~~~~d~~~~ 588 (751)
.|.||++||.+.. ...+..+ ......+++.||.|++ ++.+|+|.+..... ......+|+.++
T Consensus 30 ~~~ivllHG~~~~-----------~~~~~~~-~~~~~~l~~~~~~vi~---~D~~G~G~S~~~~~~~~~~~~~~~~l~~~ 94 (282)
T TIGR03343 30 GEAVIMLHGGGPG-----------AGGWSNY-YRNIGPFVDAGYRVIL---KDSPGFNKSDAVVMDEQRGLVNARAVKGL 94 (282)
T ss_pred CCeEEEECCCCCc-----------hhhHHHH-HHHHHHHHhCCCEEEE---ECCCCCCCCCCCcCcccccchhHHHHHHH
Confidence 3679999996411 0111110 0123456678999999 56677877754311 111234444444
Q ss_pred HHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEccCCCCCC--CCccC------------cc--------
Q 004475 589 VEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGSYNKT--LTPFG------------FQ-------- 646 (751)
Q Consensus 589 v~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~~d~~--~~~~~------------~~-------- 646 (751)
++.+ +.++++++||||||.+++.++.++|++++++|++++..... ..... ..
T Consensus 95 l~~l------~~~~~~lvG~S~Gg~ia~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (282)
T TIGR03343 95 MDAL------DIEKAHLVGNSMGGATALNFALEYPDRIGKLILMGPGGLGPSLFAPMPMEGIKLLFKLYAEPSYETLKQM 168 (282)
T ss_pred HHHc------CCCCeeEEEECchHHHHHHHHHhChHhhceEEEECCCCCCccccccCchHHHHHHHHHhcCCCHHHHHHH
Confidence 4443 45689999999999999999999999999999988642100 00000 00
Q ss_pred ------cccc-------cchh----hHH---HHHh---------cCcccccCCCCCCEEEEEcCCCCCCCCChHHHHHHH
Q 004475 647 ------TEFR-------TLWE----ATN---VYIE---------MSPITHANKIKKPILIIHGEVDDKVGLFPMQAERFF 697 (751)
Q Consensus 647 ------~~~~-------~~~~----~~~---~~~~---------~~~~~~~~~~~~P~li~~G~~D~~vp~~~~~~~~~~ 697 (751)
.... ..|. .+. .+.. ......+.++++|+|+++|++|..+| +..++++.
T Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~Pvlli~G~~D~~v~--~~~~~~~~ 246 (282)
T TIGR03343 169 LNVFLFDQSLITEELLQGRWENIQRQPEHLKNFLISSQKAPLSTWDVTARLGEIKAKTLVTWGRDDRFVP--LDHGLKLL 246 (282)
T ss_pred HhhCccCcccCcHHHHHhHHHHhhcCHHHHHHHHHhccccccccchHHHHHhhCCCCEEEEEccCCCcCC--chhHHHHH
Confidence 0000 0000 000 0000 00112356789999999999999998 78877777
Q ss_pred HHHHhCCCcEEEEEeCCCCCcCCccccHHHHHHHHHHHHH
Q 004475 698 DALKGHGALSRLVLLPFEHHVYAARENVMHVIWETDRWLQ 737 (751)
Q Consensus 698 ~~l~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~fl~ 737 (751)
+.++ ++++++++++||... .+....+.+.+.+||.
T Consensus 247 ~~~~----~~~~~~i~~agH~~~-~e~p~~~~~~i~~fl~ 281 (282)
T TIGR03343 247 WNMP----DAQLHVFSRCGHWAQ-WEHADAFNRLVIDFLR 281 (282)
T ss_pred HhCC----CCEEEEeCCCCcCCc-ccCHHHHHHHHHHHhh
Confidence 6653 568999999999976 6777888899999985
No 77
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.61 E-value=1e-12 Score=134.84 Aligned_cols=268 Identities=12% Similarity=0.033 Sum_probs=159.3
Q ss_pred ceeEEeecCCCCCCCCcccccCCCCcccccceeecCCCCeEEEEEeecccccccCCceeEEEEEcCCCCeeeccCCCCcc
Q 004475 5 TGIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDIC 84 (751)
Q Consensus 5 ~~~~~~~~~~~~~~g~~~~l~~~~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~~~~~l~i~~~~~g~~~~lt~~~~~~ 84 (751)
..|+++|+.+ ++..+... ........+|+|||+.++.+. .....|+++++.+++..+......
T Consensus 11 ~~v~~~d~~t----~~~~~~~~--~~~~~~~l~~~~dg~~l~~~~---------~~~~~v~~~d~~~~~~~~~~~~~~-- 73 (300)
T TIGR03866 11 NTISVIDTAT----LEVTRTFP--VGQRPRGITLSKDGKLLYVCA---------SDSDTIQVIDLATGEVIGTLPSGP-- 73 (300)
T ss_pred CEEEEEECCC----CceEEEEE--CCCCCCceEECCCCCEEEEEE---------CCCCeEEEEECCCCcEEEeccCCC--
Confidence 4789999988 77655432 223466799999999876643 334679999998887654322111
Q ss_pred ccceeeeeEEecCCcEEEEeecCCCCCCCCCCCCCCCCceeeccccccccchhhhhccCCccchhhhhhheeeEEEEEcC
Q 004475 85 LNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL 164 (751)
Q Consensus 85 ~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 164 (751)
....++|+|||+.|+..... ...|+++|+
T Consensus 74 ---~~~~~~~~~~g~~l~~~~~~------------------------------------------------~~~l~~~d~ 102 (300)
T TIGR03866 74 ---DPELFALHPNGKILYIANED------------------------------------------------DNLVTVIDI 102 (300)
T ss_pred ---CccEEEECCCCCEEEEEcCC------------------------------------------------CCeEEEEEC
Confidence 13567899999988765221 036788888
Q ss_pred -CCC-ceecCCCceEEeeeeCCCCceEEEEEecCCcccccccCCCceeEEEEeCCCceeeeeccCCCCCCCCCccCCccC
Q 004475 165 -DGT-AKDFGTPAVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVRE 242 (751)
Q Consensus 165 -~G~-~~~lt~~~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~ 242 (751)
+++ ...+........++|+|||+.+++..... ..++.++..+++....... ..
T Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~------------~~~~~~d~~~~~~~~~~~~-------------~~ 157 (300)
T TIGR03866 103 ETRKVLAEIPVGVEPEGMAVSPDGKIVVNTSETT------------NMAHFIDTKTYEIVDNVLV-------------DQ 157 (300)
T ss_pred CCCeEEeEeeCCCCcceEEECCCCCEEEEEecCC------------CeEEEEeCCCCeEEEEEEc-------------CC
Confidence 443 22332223356789999999998865431 2355677766543221110 01
Q ss_pred CCceeeeecCCCceEEEEEeccCCCCccccCcccceeeccCCCCCCCCceEeEee-------ceeEE-EEEecCCceEEE
Q 004475 243 GMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKL-------DLRFS-VSWCDDSLALVN 314 (751)
Q Consensus 243 ~~~~~~~spdG~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~-------~~~~~-~~~spdg~~l~~ 314 (751)
..+.+.|+|||+. +++... ..+.+++++++. +.....+... ..... +.|+|||+.++.
T Consensus 158 ~~~~~~~s~dg~~-l~~~~~-----------~~~~v~i~d~~~--~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~ 223 (300)
T TIGR03866 158 RPRFAEFTADGKE-LWVSSE-----------IGGTVSVIDVAT--RKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFV 223 (300)
T ss_pred CccEEEECCCCCE-EEEEcC-----------CCCEEEEEEcCc--ceeeeeeeecccccccccCCccceEECCCCCEEEE
Confidence 2346899999998 555321 124688888751 2222222211 11123 689999998655
Q ss_pred eeeecccceeEEEecCCCCCCcceeeeecccccccCCCCCCCeeeCCCCCEEEEeeeecCCcceEEEEccCCCCCCCCCc
Q 004475 315 ETWYKTSQTRTWLVCPGSKDVAPRVLFDRVFENVYSDPGSPMMTRTSTGTNVIAKIKKENDEQIYILLNGRGFTPEGNIP 394 (751)
Q Consensus 315 ~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~spDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 394 (751)
... ...++.+++..++ +........ ..... ++|+|||++|+.... ...
T Consensus 224 ~~~---~~~~i~v~d~~~~--~~~~~~~~~-~~~~~------~~~~~~g~~l~~~~~--------------------~~~ 271 (300)
T TIGR03866 224 ALG---PANRVAVVDAKTY--EVLDYLLVG-QRVWQ------LAFTPDEKYLLTTNG--------------------VSN 271 (300)
T ss_pred EcC---CCCeEEEEECCCC--cEEEEEEeC-CCcce------EEECCCCCEEEEEcC--------------------CCC
Confidence 432 1236778888764 222211111 11222 789999999877541 233
Q ss_pred eeEEEecCCCceeEEee
Q 004475 395 FLDLFDINTGSKERIWE 411 (751)
Q Consensus 395 ~l~~~d~~~g~~~~l~~ 411 (751)
.|.+||+.+++...-+.
T Consensus 272 ~i~v~d~~~~~~~~~~~ 288 (300)
T TIGR03866 272 DVSVIDVAALKVIKSIK 288 (300)
T ss_pred eEEEEECCCCcEEEEEE
Confidence 79999999887644433
No 78
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=99.60 E-value=1.4e-12 Score=125.08 Aligned_cols=290 Identities=13% Similarity=0.081 Sum_probs=174.9
Q ss_pred eeEEeecCCCCCCCCcccccCCCCcccccceeecCCCCeEEEEEeecccccccCCceeEEEEEcCCCCeeeccCCCCccc
Q 004475 6 GIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICL 85 (751)
Q Consensus 6 ~~~~~~~~~~~~~g~~~~l~~~~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~~~~~l~i~~~~~g~~~~lt~~~~~~~ 85 (751)
+||+++|++ ++|+...+..+......+..+|+|+++.|+.+...+ ..++...|-+|.++|+...+-......
T Consensus 17 gI~v~~ld~--~~g~l~~~~~v~~~~nptyl~~~~~~~~LY~v~~~~-----~~ggvaay~iD~~~G~Lt~ln~~~~~g- 88 (346)
T COG2706 17 GIYVFNLDT--KTGELSLLQLVAELGNPTYLAVNPDQRHLYVVNEPG-----EEGGVAAYRIDPDDGRLTFLNRQTLPG- 88 (346)
T ss_pred ceEEEEEeC--cccccchhhhccccCCCceEEECCCCCEEEEEEecC-----CcCcEEEEEEcCCCCeEEEeeccccCC-
Confidence 899999987 677777665444444678889999998887665321 155677788887778877774332211
Q ss_pred cceeeeeEEecCCcEEEEeecCCCCCCCCCCCCCCCCceeeccccccccchhhhhccCCccchhhhhhheeeEEEEEcCC
Q 004475 86 NAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSLD 165 (751)
Q Consensus 86 ~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 165 (751)
+ ....++.++||++|+......... .++-+..+
T Consensus 89 ~-~p~yvsvd~~g~~vf~AnY~~g~v----------------------------------------------~v~p~~~d 121 (346)
T COG2706 89 S-PPCYVSVDEDGRFVFVANYHSGSV----------------------------------------------SVYPLQAD 121 (346)
T ss_pred C-CCeEEEECCCCCEEEEEEccCceE----------------------------------------------EEEEcccC
Confidence 1 124668899999888775542111 11111112
Q ss_pred CCc----------------eecCCCceEEeeeeCCCCceEEEEEecCCcccccccCCCceeEEEEeCCCceeeeeccCCC
Q 004475 166 GTA----------------KDFGTPAVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPP 229 (751)
Q Consensus 166 G~~----------------~~lt~~~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~ 229 (751)
|.+ ++-+ .......++|||++|++.... ..++++|+++.+.+........
T Consensus 122 G~l~~~v~~~~h~g~~p~~rQ~~--~h~H~a~~tP~~~~l~v~DLG------------~Dri~~y~~~dg~L~~~~~~~v 187 (346)
T COG2706 122 GSLQPVVQVVKHTGSGPHERQES--PHVHSANFTPDGRYLVVPDLG------------TDRIFLYDLDDGKLTPADPAEV 187 (346)
T ss_pred CccccceeeeecCCCCCCccccC--CccceeeeCCCCCEEEEeecC------------CceEEEEEcccCcccccccccc
Confidence 311 1111 235678899999999887544 3468889888665544333222
Q ss_pred CCCCCCccCCccCCCceeeeecCCCceEEEEEeccCCCCccccCcccceeeccCCCCCCCCceEeEe---------ecee
Q 004475 230 AEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHK---------LDLR 300 (751)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~spdG~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~---------~~~~ 300 (751)
....|.|.+.|+|+|+. +|.+... .+.+.++..++. .+..+++.. ....
T Consensus 188 ---------~~G~GPRHi~FHpn~k~-aY~v~EL-----------~stV~v~~y~~~-~g~~~~lQ~i~tlP~dF~g~~~ 245 (346)
T COG2706 188 ---------KPGAGPRHIVFHPNGKY-AYLVNEL-----------NSTVDVLEYNPA-VGKFEELQTIDTLPEDFTGTNW 245 (346)
T ss_pred ---------CCCCCcceEEEcCCCcE-EEEEecc-----------CCEEEEEEEcCC-CceEEEeeeeccCccccCCCCc
Confidence 23457899999999997 5554422 234555544322 223222221 1222
Q ss_pred EE-EEEecCCceEEEeeeecccceeEEEecCCCCCCcceeeeecccccccCCCCCCCeeeCCCCCEEEEeeeecCCcceE
Q 004475 301 FS-VSWCDDSLALVNETWYKTSQTRTWLVCPGSKDVAPRVLFDRVFENVYSDPGSPMMTRTSTGTNVIAKIKKENDEQIY 379 (751)
Q Consensus 301 ~~-~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~spDG~~l~~~~~~~~~~~~~ 379 (751)
.. +..||||+.|+. +++.-....+|.++..++ ....+...+.... .|- .+.++++|+.|+....
T Consensus 246 ~aaIhis~dGrFLYa-sNRg~dsI~~f~V~~~~g--~L~~~~~~~teg~--~PR--~F~i~~~g~~Liaa~q-------- 310 (346)
T COG2706 246 AAAIHISPDGRFLYA-SNRGHDSIAVFSVDPDGG--KLELVGITPTEGQ--FPR--DFNINPSGRFLIAANQ-------- 310 (346)
T ss_pred eeEEEECCCCCEEEE-ecCCCCeEEEEEEcCCCC--EEEEEEEeccCCc--CCc--cceeCCCCCEEEEEcc--------
Confidence 34 889999997754 545444567888888885 2222211111110 011 1668999999888773
Q ss_pred EEEccCCCCCCCCCceeEEEecCCCceeEEee
Q 004475 380 ILLNGRGFTPEGNIPFLDLFDINTGSKERIWE 411 (751)
Q Consensus 380 ~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l~~ 411 (751)
++++..+++.|-+||+++.+..
T Consensus 311 ----------~sd~i~vf~~d~~TG~L~~~~~ 332 (346)
T COG2706 311 ----------KSDNITVFERDKETGRLTLLGR 332 (346)
T ss_pred ----------CCCcEEEEEEcCCCceEEeccc
Confidence 2455678888999998876643
No 79
>TIGR02240 PHA_depoly_arom poly(3-hydroxyalkanoate) depolymerase. This family consists of the polyhydroxyalkanoic acid (PHA) depolymerase of Pseudomonas oleovorans, Pseudomonas putida BM01, and related species. This enzyme is part of polyester storage and mobilization system as in many bacteria. However, species containing this enzyme are unusual in their capacity to produce aromatic polyesters when grown on carbon sources such as benzoic acid or phenylacetic acid.
Probab=99.59 E-value=9e-14 Score=140.27 Aligned_cols=173 Identities=14% Similarity=0.175 Sum_probs=115.8
Q ss_pred HhCCeEEEEcCCCCCCCCCCCCCCc--hhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeE
Q 004475 551 LARRFAVLAGPSIPIIGEGDKLPND--RFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCC 628 (751)
Q Consensus 551 ~~~G~~v~~~~~~~~~g~g~~~~~~--~~~~~~~~d~~~~v~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~p~~~~~ 628 (751)
+.++|.|++ ++.+|+|.+.... ...+...+|+.++++.+ +..++.|+||||||.+|+.+|.++|+++++
T Consensus 48 L~~~~~vi~---~Dl~G~G~S~~~~~~~~~~~~~~~~~~~i~~l------~~~~~~LvG~S~GG~va~~~a~~~p~~v~~ 118 (276)
T TIGR02240 48 LDPDLEVIA---FDVPGVGGSSTPRHPYRFPGLAKLAARMLDYL------DYGQVNAIGVSWGGALAQQFAHDYPERCKK 118 (276)
T ss_pred hccCceEEE---ECCCCCCCCCCCCCcCcHHHHHHHHHHHHHHh------CcCceEEEEECHHHHHHHHHHHHCHHHhhh
Confidence 456799999 6777888875432 23456667777766665 235799999999999999999999999999
Q ss_pred EEEccCCCCCCCC-----------c-cCcccc----------cccch-hhHH----------------HHH------hcC
Q 004475 629 GIARSGSYNKTLT-----------P-FGFQTE----------FRTLW-EATN----------------VYI------EMS 663 (751)
Q Consensus 629 ~v~~~~~~d~~~~-----------~-~~~~~~----------~~~~~-~~~~----------------~~~------~~~ 663 (751)
+|+.++....... . ..+... ..... ..++ .+. ...
T Consensus 119 lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (276)
T TIGR02240 119 LILAATAAGAVMVPGKPKVLMMMASPRRYIQPSHGIHIAPDIYGGAFRRDPELAMAHASKVRSGGKLGYYWQLFAGLGWT 198 (276)
T ss_pred eEEeccCCccccCCCchhHHHHhcCchhhhccccccchhhhhccceeeccchhhhhhhhhcccCCCchHHHHHHHHcCCc
Confidence 9998875421100 0 000000 00000 0000 000 011
Q ss_pred cccccCCCCCCEEEEEcCCCCCCCCChHHHHHHHHHHHhCCCcEEEEEeCCCCCcCCccccHHHHHHHHHHHHHHHh
Q 004475 664 PITHANKIKKPILIIHGEVDDKVGLFPMQAERFFDALKGHGALSRLVLLPFEHHVYAARENVMHVIWETDRWLQKYC 740 (751)
Q Consensus 664 ~~~~~~~~~~P~li~~G~~D~~vp~~~~~~~~~~~~l~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~fl~~~l 740 (751)
....+.++++|+|+++|++|..+| +..++++.+.+. ..+++++++ +|... .+....+.+.+.+|+++.-
T Consensus 199 ~~~~l~~i~~P~lii~G~~D~~v~--~~~~~~l~~~~~----~~~~~~i~~-gH~~~-~e~p~~~~~~i~~fl~~~~ 267 (276)
T TIGR02240 199 SIHWLHKIQQPTLVLAGDDDPIIP--LINMRLLAWRIP----NAELHIIDD-GHLFL-ITRAEAVAPIIMKFLAEER 267 (276)
T ss_pred hhhHhhcCCCCEEEEEeCCCCcCC--HHHHHHHHHhCC----CCEEEEEcC-CCchh-hccHHHHHHHHHHHHHHhh
Confidence 123357889999999999999998 888877876654 346778875 99876 5677889999999998753
No 80
>PRK10985 putative hydrolase; Provisional
Probab=99.59 E-value=1.3e-13 Score=141.93 Aligned_cols=228 Identities=18% Similarity=0.113 Sum_probs=136.6
Q ss_pred EEcCCCceEEEEEEcCCCCCCCCCCCccEEEEEcCCCCcCcccCCcccCCCCccCCCCchHHHHHHhCCeEEEEcCCCCC
Q 004475 486 YQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGPSIPI 565 (751)
Q Consensus 486 ~~~~~~~~i~~~~~~P~~~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~v~~~~~~~~ 565 (751)
+...+|..+...+...+. .+.+.|+||++||.+ ++. ...+...++..|.++||.|++ .++
T Consensus 36 ~~~~dg~~~~l~w~~~~~----~~~~~p~vll~HG~~-----------g~~--~~~~~~~~~~~l~~~G~~v~~---~d~ 95 (324)
T PRK10985 36 LELPDGDFVDLAWSEDPA----QARHKPRLVLFHGLE-----------GSF--NSPYAHGLLEAAQKRGWLGVV---MHF 95 (324)
T ss_pred EECCCCCEEEEecCCCCc----cCCCCCEEEEeCCCC-----------CCC--cCHHHHHHHHHHHHCCCEEEE---EeC
Confidence 344577655444322111 122369999999953 110 111122355678899999999 455
Q ss_pred CCCCCCCC--CchhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCc--eeEEEEccCCCCCCCC
Q 004475 566 IGEGDKLP--NDRFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHL--FCCGIARSGSYNKTLT 641 (751)
Q Consensus 566 ~g~g~~~~--~~~~~~~~~~d~~~~v~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~p~~--~~~~v~~~~~~d~~~~ 641 (751)
+|+|.+.. ...+.....+|+..++++++++. ...+++++||||||.+++.+++.+++. +.++|++++.++....
T Consensus 96 rG~g~~~~~~~~~~~~~~~~D~~~~i~~l~~~~--~~~~~~~vG~S~GG~i~~~~~~~~~~~~~~~~~v~i~~p~~~~~~ 173 (324)
T PRK10985 96 RGCSGEPNRLHRIYHSGETEDARFFLRWLQREF--GHVPTAAVGYSLGGNMLACLLAKEGDDLPLDAAVIVSAPLMLEAC 173 (324)
T ss_pred CCCCCCccCCcceECCCchHHHHHHHHHHHHhC--CCCCEEEEEecchHHHHHHHHHhhCCCCCccEEEEEcCCCCHHHH
Confidence 56665422 11222234688999999998763 235799999999999888888776543 7888888887552100
Q ss_pred c----------cC-----------------cccc------c----cc-------------ch-hhHHHHHhcCcccccCC
Q 004475 642 P----------FG-----------------FQTE------F----RT-------------LW-EATNVYIEMSPITHANK 670 (751)
Q Consensus 642 ~----------~~-----------------~~~~------~----~~-------------~~-~~~~~~~~~~~~~~~~~ 670 (751)
. +. +... . .. .+ ...+.|...+....+.+
T Consensus 174 ~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fd~~~~~~~~g~~~~~~~y~~~~~~~~l~~ 253 (324)
T PRK10985 174 SYRMEQGFSRVYQRYLLNLLKANAARKLAAYPGTLPINLAQLKSVRRLREFDDLITARIHGFADAIDYYRQCSALPLLNQ 253 (324)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHhccccccCCHHHHhcCCcHHHHhhhheeccCCCCCHHHHHHHCChHHHHhC
Confidence 0 00 0000 0 00 00 01122334444456788
Q ss_pred CCCCEEEEEcCCCCCCCCChHHHHHHHHHHHhCCCcEEEEEeCCCCCcCCcccc----HHHHHHHHHHHHHHHhc
Q 004475 671 IKKPILIIHGEVDDKVGLFPMQAERFFDALKGHGALSRLVLLPFEHHVYAAREN----VMHVIWETDRWLQKYCL 741 (751)
Q Consensus 671 ~~~P~li~~G~~D~~vp~~~~~~~~~~~~l~~~~~~~~~~~~~~~~H~~~~~~~----~~~~~~~~~~fl~~~l~ 741 (751)
+++|+|+++|++|++++ ......+. +....+++++++++||....... ..-.-+.+.+||+..+.
T Consensus 254 i~~P~lii~g~~D~~~~--~~~~~~~~----~~~~~~~~~~~~~~GH~~~~~g~~~~~~~w~~~~~~~~~~~~~~ 322 (324)
T PRK10985 254 IRKPTLIIHAKDDPFMT--HEVIPKPE----SLPPNVEYQLTEHGGHVGFVGGTLLKPQMWLEQRIPDWLTTYLE 322 (324)
T ss_pred CCCCEEEEecCCCCCCC--hhhChHHH----HhCCCeEEEECCCCCceeeCCCCCCCCCccHHHHHHHHHHHhhc
Confidence 89999999999999987 65544432 22345789999999997543221 12344567888876653
No 81
>PRK10673 acyl-CoA esterase; Provisional
Probab=99.59 E-value=6.7e-14 Score=139.74 Aligned_cols=195 Identities=14% Similarity=0.107 Sum_probs=123.8
Q ss_pred ccEEEEEcCCCCcCcccCCcccCCCCccCCCCchHHHHHHhCCeEEEEcCCCCCCCCCCCCCCc-hhHHHHHHHHHHHHH
Q 004475 512 LPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGPSIPIIGEGDKLPND-RFVEQLVSSAEAAVE 590 (751)
Q Consensus 512 ~P~vv~~HGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~v~~~~~~~~~g~g~~~~~~-~~~~~~~~d~~~~v~ 590 (751)
.|+||++||.+. +...+ ...... +.++|.|++ .+.+|+|.+.... ....+..+|+.++++
T Consensus 16 ~~~iv~lhG~~~-----------~~~~~----~~~~~~-l~~~~~vi~---~D~~G~G~s~~~~~~~~~~~~~d~~~~l~ 76 (255)
T PRK10673 16 NSPIVLVHGLFG-----------SLDNL----GVLARD-LVNDHDIIQ---VDMRNHGLSPRDPVMNYPAMAQDLLDTLD 76 (255)
T ss_pred CCCEEEECCCCC-----------chhHH----HHHHHH-HhhCCeEEE---ECCCCCCCCCCCCCCCHHHHHHHHHHHHH
Confidence 588999999531 11111 122233 346799999 5666777665432 235566777777777
Q ss_pred HHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEccCC-CCCCCCc-------------cCcccc-c------
Q 004475 591 EVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGS-YNKTLTP-------------FGFQTE-F------ 649 (751)
Q Consensus 591 ~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~-~d~~~~~-------------~~~~~~-~------ 649 (751)
++ ...++.++||||||.+|+.++.++|++++++|++++. ....... ...... .
T Consensus 77 ~l------~~~~~~lvGhS~Gg~va~~~a~~~~~~v~~lvli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (255)
T PRK10673 77 AL------QIEKATFIGHSMGGKAVMALTALAPDRIDKLVAIDIAPVDYHVRRHDEIFAAINAVSEAGATTRQQAAAIMR 150 (255)
T ss_pred Hc------CCCceEEEEECHHHHHHHHHHHhCHhhcceEEEEecCCCCccchhhHHHHHHHHHhhhcccccHHHHHHHHH
Confidence 65 2357999999999999999999999999999987532 1110000 000000 0
Q ss_pred ----c-------------cchh--hH---HHHHhcCcccccCCCCCCEEEEEcCCCCCCCCChHHHHHHHHHHHhCCCcE
Q 004475 650 ----R-------------TLWE--AT---NVYIEMSPITHANKIKKPILIIHGEVDDKVGLFPMQAERFFDALKGHGALS 707 (751)
Q Consensus 650 ----~-------------~~~~--~~---~~~~~~~~~~~~~~~~~P~li~~G~~D~~vp~~~~~~~~~~~~l~~~~~~~ 707 (751)
. ..|. .+ ..+........+.++++|+|+++|++|..++ ....+.+.+.+ ..+
T Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~i~G~~D~~~~--~~~~~~~~~~~----~~~ 224 (255)
T PRK10673 151 QHLNEEGVIQFLLKSFVDGEWRFNVPVLWDQYPHIVGWEKIPAWPHPALFIRGGNSPYVT--EAYRDDLLAQF----PQA 224 (255)
T ss_pred HhcCCHHHHHHHHhcCCcceeEeeHHHHHHhHHHHhCCcccCCCCCCeEEEECCCCCCCC--HHHHHHHHHhC----CCc
Confidence 0 0000 00 0111111122345678999999999999987 66665555444 356
Q ss_pred EEEEeCCCCCcCCccccHHHHHHHHHHHHHH
Q 004475 708 RLVLLPFEHHVYAARENVMHVIWETDRWLQK 738 (751)
Q Consensus 708 ~~~~~~~~~H~~~~~~~~~~~~~~~~~fl~~ 738 (751)
++.++++++|... .+....+.+.+.+||.+
T Consensus 225 ~~~~~~~~gH~~~-~~~p~~~~~~l~~fl~~ 254 (255)
T PRK10673 225 RAHVIAGAGHWVH-AEKPDAVLRAIRRYLND 254 (255)
T ss_pred EEEEeCCCCCeee-ccCHHHHHHHHHHHHhc
Confidence 8899999999765 56678899999999975
No 82
>TIGR03056 bchO_mg_che_rel putative magnesium chelatase accessory protein. Members of this family belong to the alpha/beta fold family hydrolases (PFAM model pfam00561). Members are found in bacterial genomes if and only if they encoded for anoxygenic photosynthetic systems similar to that of Rhodobacter capsulatus and other alpha-Proteobacteria. Members often are encoded in the same operon as subunits of the protoporphyrin IX magnesium chelatase, and were once designated BchO. No literature supports a role as an actual subunit of magnesium chelatase, but an accessory role is possible, as suggested by placement by its probable hydrolase activity.
Probab=99.58 E-value=8.8e-14 Score=140.98 Aligned_cols=194 Identities=20% Similarity=0.165 Sum_probs=120.8
Q ss_pred ccEEEEEcCCCCcCcccCCcccCCCCccCCCCchHHHHHHhCCeEEEEcCCCCCCCCCCCCCCc---hhHHHHHHHHHHH
Q 004475 512 LPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGPSIPIIGEGDKLPND---RFVEQLVSSAEAA 588 (751)
Q Consensus 512 ~P~vv~~HGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~v~~~~~~~~~g~g~~~~~~---~~~~~~~~d~~~~ 588 (751)
.|+||++||.+. ....|. ..... ++++|.|++ ++.+|+|.+.... .......+|+.++
T Consensus 28 ~~~vv~~hG~~~-----------~~~~~~----~~~~~-l~~~~~vi~---~D~~G~G~S~~~~~~~~~~~~~~~~l~~~ 88 (278)
T TIGR03056 28 GPLLLLLHGTGA-----------STHSWR----DLMPP-LARSFRVVA---PDLPGHGFTRAPFRFRFTLPSMAEDLSAL 88 (278)
T ss_pred CCeEEEEcCCCC-----------CHHHHH----HHHHH-HhhCcEEEe---ecCCCCCCCCCccccCCCHHHHHHHHHHH
Confidence 478999999531 111111 22233 456799999 5666777764322 2344555555555
Q ss_pred HHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEccCCCCCCCC------ccC--------c---------
Q 004475 589 VEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGSYNKTLT------PFG--------F--------- 645 (751)
Q Consensus 589 v~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~~d~~~~------~~~--------~--------- 645 (751)
++.+ +..+++++||||||.+++.++.+.|++++++|+.++....... +.. .
T Consensus 89 i~~~------~~~~~~lvG~S~Gg~~a~~~a~~~p~~v~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (278)
T TIGR03056 89 CAAE------GLSPDGVIGHSAGAAIALRLALDGPVTPRMVVGINAALMPFEGMAGTLFPYMARVLACNPFTPPMMSRGA 162 (278)
T ss_pred HHHc------CCCCceEEEECccHHHHHHHHHhCCcccceEEEEcCcccccccccccccchhhHhhhhcccchHHHHhhc
Confidence 4432 2357899999999999999999999989988888765331100 000 0
Q ss_pred cccc---------ccchh--hHHHHH-----------------hcC---cccccCCCCCCEEEEEcCCCCCCCCChHHHH
Q 004475 646 QTEF---------RTLWE--ATNVYI-----------------EMS---PITHANKIKKPILIIHGEVDDKVGLFPMQAE 694 (751)
Q Consensus 646 ~~~~---------~~~~~--~~~~~~-----------------~~~---~~~~~~~~~~P~li~~G~~D~~vp~~~~~~~ 694 (751)
.... ...+. ....+. ... ....+.++++|+|+++|++|..+| ...++
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~P~lii~g~~D~~vp--~~~~~ 240 (278)
T TIGR03056 163 ADQQRVERLIRDTGSLLDKAGMTYYGRLIRSPAHVDGALSMMAQWDLAPLNRDLPRITIPLHLIAGEEDKAVP--PDESK 240 (278)
T ss_pred ccCcchhHHhhccccccccchhhHHHHhhcCchhhhHHHHHhhcccccchhhhcccCCCCEEEEEeCCCcccC--HHHHH
Confidence 0000 00000 000000 000 112356788999999999999998 77777
Q ss_pred HHHHHHHhCCCcEEEEEeCCCCCcCCccccHHHHHHHHHHHHH
Q 004475 695 RFFDALKGHGALSRLVLLPFEHHVYAARENVMHVIWETDRWLQ 737 (751)
Q Consensus 695 ~~~~~l~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~fl~ 737 (751)
.+.+.+. .+++.++++++|.+. .+....+.+.+.+||+
T Consensus 241 ~~~~~~~----~~~~~~~~~~gH~~~-~e~p~~~~~~i~~f~~ 278 (278)
T TIGR03056 241 RAATRVP----TATLHVVPGGGHLVH-EEQADGVVGLILQAAE 278 (278)
T ss_pred HHHHhcc----CCeEEEECCCCCccc-ccCHHHHHHHHHHHhC
Confidence 7665543 357899999999876 5667888999999873
No 83
>PLN03087 BODYGUARD 1 domain containing hydrolase; Provisional
Probab=99.58 E-value=1.2e-13 Score=145.50 Aligned_cols=222 Identities=14% Similarity=0.118 Sum_probs=134.7
Q ss_pred EEEEcCCCceEEEEEEcCCCCCCCCCCCccEEEEEcCCCCcCcccCCcccCCCCccCCCCchHHHHHH---hCCeEEEEc
Q 004475 484 IKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFL---ARRFAVLAG 560 (751)
Q Consensus 484 i~~~~~~~~~i~~~~~~P~~~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~G~~v~~~ 560 (751)
..+...++..+......|++. ...|.||++||.+.. ...|.......|. .++|.|++
T Consensus 178 ~~~~~~~~~~l~~~~~gp~~~-----~~k~~VVLlHG~~~s--------------~~~W~~~~~~~L~~~~~~~yrVia- 237 (481)
T PLN03087 178 TSWLSSSNESLFVHVQQPKDN-----KAKEDVLFIHGFISS--------------SAFWTETLFPNFSDAAKSTYRLFA- 237 (481)
T ss_pred eeeEeeCCeEEEEEEecCCCC-----CCCCeEEEECCCCcc--------------HHHHHHHHHHHHHHHhhCCCEEEE-
Confidence 345555667788888887651 124789999996411 1111111112333 47999999
Q ss_pred CCCCCCCCCCCCCCch---hHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEccCCCC
Q 004475 561 PSIPIIGEGDKLPNDR---FVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGSYN 637 (751)
Q Consensus 561 ~~~~~~g~g~~~~~~~---~~~~~~~d~~~~v~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~~d 637 (751)
.+.+|+|.+..... ...+..+++. ..+.+. .+..++.++||||||.+++.++.++|++++++|++++...
T Consensus 238 --~Dl~G~G~S~~p~~~~ytl~~~a~~l~---~~ll~~--lg~~k~~LVGhSmGG~iAl~~A~~~Pe~V~~LVLi~~~~~ 310 (481)
T PLN03087 238 --VDLLGFGRSPKPADSLYTLREHLEMIE---RSVLER--YKVKSFHIVAHSLGCILALALAVKHPGAVKSLTLLAPPYY 310 (481)
T ss_pred --ECCCCCCCCcCCCCCcCCHHHHHHHHH---HHHHHH--cCCCCEEEEEECHHHHHHHHHHHhChHhccEEEEECCCcc
Confidence 66678887654321 1233334332 122222 1346899999999999999999999999999999886432
Q ss_pred CCCCc-------------cCc-cc----cc---------c----------cchhhH----------HHHH----hc--Cc
Q 004475 638 KTLTP-------------FGF-QT----EF---------R----------TLWEAT----------NVYI----EM--SP 664 (751)
Q Consensus 638 ~~~~~-------------~~~-~~----~~---------~----------~~~~~~----------~~~~----~~--~~ 664 (751)
..... ... .. .. . ..|... ..+. .. ..
T Consensus 311 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~ 390 (481)
T PLN03087 311 PVPKGVQATQYVMRKVAPRRVWPPIAFGASVACWYEHISRTICLVICKNHRLWEFLTRLLTRNRMRTFLIEGFFCHTHNA 390 (481)
T ss_pred ccccchhHHHHHHHHhcccccCCccccchhHHHHHHHHHhhhhcccccchHHHHHHHHHhhhhhhhHHHHHHHHhccchh
Confidence 11000 000 00 00 0 001100 0000 00 00
Q ss_pred c--------------------cccCCCCCCEEEEEcCCCCCCCCChHHHHHHHHHHHhCCCcEEEEEeCCCCCcCCcccc
Q 004475 665 I--------------------THANKIKKPILIIHGEVDDKVGLFPMQAERFFDALKGHGALSRLVLLPFEHHVYAAREN 724 (751)
Q Consensus 665 ~--------------------~~~~~~~~P~li~~G~~D~~vp~~~~~~~~~~~~l~~~~~~~~~~~~~~~~H~~~~~~~ 724 (751)
. ....++++|+|+++|++|..+| +..++.+.+.++ .+++++++++||.....+.
T Consensus 391 ~~~~l~~~i~~~~~~l~~~l~~l~~~I~vPtLII~Ge~D~ivP--~~~~~~la~~iP----~a~l~vI~~aGH~~~v~e~ 464 (481)
T PLN03087 391 AWHTLHNIICGSGSKLDGYLDHVRDQLKCDVAIFHGGDDELIP--VECSYAVKAKVP----RARVKVIDDKDHITIVVGR 464 (481)
T ss_pred hHHHHHHHHhchhhhhhhHHHHHHHhCCCCEEEEEECCCCCCC--HHHHHHHHHhCC----CCEEEEeCCCCCcchhhcC
Confidence 0 0112588999999999999998 888888776664 4589999999999764466
Q ss_pred HHHHHHHHHHHHHH
Q 004475 725 VMHVIWETDRWLQK 738 (751)
Q Consensus 725 ~~~~~~~~~~fl~~ 738 (751)
...+...+.+|...
T Consensus 465 p~~fa~~L~~F~~~ 478 (481)
T PLN03087 465 QKEFARELEEIWRR 478 (481)
T ss_pred HHHHHHHHHHHhhc
Confidence 77888888888753
No 84
>TIGR02427 protocat_pcaD 3-oxoadipate enol-lactonase. Members of this family are 3-oxoadipate enol-lactonase. Note that the substrate is known as 3-oxoadipate enol-lactone, 2-oxo-2,3-dihydrofuran-5-acetate, 4,5-Dihydro-5-oxofuran-2-acetate, and 5-oxo-4,5-dihydrofuran-2-acetate. The enzyme the catalyzes the fourth step in the protocatechuate degradation to beta-ketoadipate and then to succinyl-CoA and acetyl-CoA. 4-hydroxybenzoate, 3-hydroxybenzoate, and vanillate all can be converted in one step to protocatechuate. This enzyme also acts in catechol degradation. In genomes that catabolize both catechol and protocatechuate, two forms of this enzyme may be found. All members of the seed alignment for this model were chosen from within protocatechuate degradation operons of at least three genes of the pathway, from genomes with the complete pathway through beta-ketoadipate.
Probab=99.58 E-value=2.4e-14 Score=142.46 Aligned_cols=193 Identities=18% Similarity=0.201 Sum_probs=121.0
Q ss_pred ccEEEEEcCCCCcCcccCCcccCCCCccCCCCchHHHHHHhCCeEEEEcCCCCCCCCCCCCCCc--hhHHHHHHHHHHHH
Q 004475 512 LPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGPSIPIIGEGDKLPND--RFVEQLVSSAEAAV 589 (751)
Q Consensus 512 ~P~vv~~HGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~v~~~~~~~~~g~g~~~~~~--~~~~~~~~d~~~~v 589 (751)
.|+||++||.|. ....+ ......+.+||.|++ .+.+|+|.+.... ....+..+|+.+.+
T Consensus 13 ~~~li~~hg~~~--------------~~~~~--~~~~~~l~~~~~v~~---~d~~G~G~s~~~~~~~~~~~~~~~~~~~i 73 (251)
T TIGR02427 13 APVLVFINSLGT--------------DLRMW--DPVLPALTPDFRVLR---YDKRGHGLSDAPEGPYSIEDLADDVLALL 73 (251)
T ss_pred CCeEEEEcCccc--------------chhhH--HHHHHHhhcccEEEE---ecCCCCCCCCCCCCCCCHHHHHHHHHHHH
Confidence 589999999541 11111 122233457999999 5566777653322 23445556555555
Q ss_pred HHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEccCCCCCCCC-cc----------Ccc------------
Q 004475 590 EEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGSYNKTLT-PF----------GFQ------------ 646 (751)
Q Consensus 590 ~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~~d~~~~-~~----------~~~------------ 646 (751)
+.+ +.+++.++|||+||.+++.+|.++|++++++++.++....... .+ ...
T Consensus 74 ~~~------~~~~v~liG~S~Gg~~a~~~a~~~p~~v~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (251)
T TIGR02427 74 DHL------GIERAVFCGLSLGGLIAQGLAARRPDRVRALVLSNTAAKIGTPESWNARIAAVRAEGLAALADAVLERWFT 147 (251)
T ss_pred HHh------CCCceEEEEeCchHHHHHHHHHHCHHHhHHHhhccCccccCchhhHHHHHhhhhhccHHHHHHHHHHHHcc
Confidence 543 3468999999999999999999999999998887764321110 00 000
Q ss_pred cccc--c-----chh------hH-------HHHHhcCcccccCCCCCCEEEEEcCCCCCCCCChHHHHHHHHHHHhCCCc
Q 004475 647 TEFR--T-----LWE------AT-------NVYIEMSPITHANKIKKPILIIHGEVDDKVGLFPMQAERFFDALKGHGAL 706 (751)
Q Consensus 647 ~~~~--~-----~~~------~~-------~~~~~~~~~~~~~~~~~P~li~~G~~D~~vp~~~~~~~~~~~~l~~~~~~ 706 (751)
.... . .+. .. ..+........+.++++|+|+++|++|..+| ......+.+.+. .
T Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Pvlii~g~~D~~~~--~~~~~~~~~~~~----~ 221 (251)
T TIGR02427 148 PGFREAHPARLDLYRNMLVRQPPDGYAGCCAAIRDADFRDRLGAIAVPTLCIAGDQDGSTP--PELVREIADLVP----G 221 (251)
T ss_pred cccccCChHHHHHHHHHHHhcCHHHHHHHHHHHhcccHHHHhhhcCCCeEEEEeccCCcCC--hHHHHHHHHhCC----C
Confidence 0000 0 000 00 0011112223456788999999999999998 777776665553 3
Q ss_pred EEEEEeCCCCCcCCccccHHHHHHHHHHHH
Q 004475 707 SRLVLLPFEHHVYAARENVMHVIWETDRWL 736 (751)
Q Consensus 707 ~~~~~~~~~~H~~~~~~~~~~~~~~~~~fl 736 (751)
.+++++++++|... .+..+.+.+.+.+||
T Consensus 222 ~~~~~~~~~gH~~~-~~~p~~~~~~i~~fl 250 (251)
T TIGR02427 222 ARFAEIRGAGHIPC-VEQPEAFNAALRDFL 250 (251)
T ss_pred ceEEEECCCCCccc-ccChHHHHHHHHHHh
Confidence 57899999999876 456777888888886
No 85
>PLN02824 hydrolase, alpha/beta fold family protein
Probab=99.57 E-value=1.8e-13 Score=139.51 Aligned_cols=195 Identities=18% Similarity=0.200 Sum_probs=123.4
Q ss_pred cEEEEEcCCCCcCcccCCcccCCCCccCCCCchHHHHHHhCCeEEEEcCCCCCCCCCCCCCCc---------hhHHHHHH
Q 004475 513 PCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGPSIPIIGEGDKLPND---------RFVEQLVS 583 (751)
Q Consensus 513 P~vv~~HGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~v~~~~~~~~~g~g~~~~~~---------~~~~~~~~ 583 (751)
|.||++||.+.. ...| . .....|+.+ |.|++ ++.+|+|.+.... ....+..+
T Consensus 30 ~~vlllHG~~~~-----------~~~w---~-~~~~~L~~~-~~vi~---~DlpG~G~S~~~~~~~~~~~~~~~~~~~a~ 90 (294)
T PLN02824 30 PALVLVHGFGGN-----------ADHW---R-KNTPVLAKS-HRVYA---IDLLGYGYSDKPNPRSAPPNSFYTFETWGE 90 (294)
T ss_pred CeEEEECCCCCC-----------hhHH---H-HHHHHHHhC-CeEEE---EcCCCCCCCCCCccccccccccCCHHHHHH
Confidence 689999996411 1111 1 234455555 68998 6677888775421 22455566
Q ss_pred HHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEccCCCCCC---CCc-cCc------c---cc--
Q 004475 584 SAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGSYNKT---LTP-FGF------Q---TE-- 648 (751)
Q Consensus 584 d~~~~v~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~~d~~---~~~-~~~------~---~~-- 648 (751)
|+.+.++.+ . .+++.++||||||.+++.++.++|++++++|++++..... ... ... . ..
T Consensus 91 ~l~~~l~~l---~---~~~~~lvGhS~Gg~va~~~a~~~p~~v~~lili~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (294)
T PLN02824 91 QLNDFCSDV---V---GDPAFVICNSVGGVVGLQAAVDAPELVRGVMLINISLRGLHIKKQPWLGRPFIKAFQNLLRETA 164 (294)
T ss_pred HHHHHHHHh---c---CCCeEEEEeCHHHHHHHHHHHhChhheeEEEEECCCcccccccccchhhhHHHHHHHHHHhchh
Confidence 666666544 2 3689999999999999999999999999999988743110 000 000 0 00
Q ss_pred --------c------ccc----hhh--------H-------------HHHHhc---C----cccccCCCCCCEEEEEcCC
Q 004475 649 --------F------RTL----WEA--------T-------------NVYIEM---S----PITHANKIKKPILIIHGEV 682 (751)
Q Consensus 649 --------~------~~~----~~~--------~-------------~~~~~~---~----~~~~~~~~~~P~li~~G~~ 682 (751)
. ... +.. . ..+... . ....+.++++|+|+++|++
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P~lvi~G~~ 244 (294)
T PLN02824 165 VGKAFFKSVATPETVKNILCQCYHDDSAVTDELVEAILRPGLEPGAVDVFLDFISYSGGPLPEELLPAVKCPVLIAWGEK 244 (294)
T ss_pred HHHHHHHhhcCHHHHHHHHHHhccChhhccHHHHHHHHhccCCchHHHHHHHHhccccccchHHHHhhcCCCeEEEEecC
Confidence 0 000 000 0 000000 0 1123567899999999999
Q ss_pred CCCCCCChHHHHHHHHHHHhCCCcEEEEEeCCCCCcCCccccHHHHHHHHHHHHHHH
Q 004475 683 DDKVGLFPMQAERFFDALKGHGALSRLVLLPFEHHVYAARENVMHVIWETDRWLQKY 739 (751)
Q Consensus 683 D~~vp~~~~~~~~~~~~l~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~fl~~~ 739 (751)
|..+| ...++.+.+ .....+++++++++|... .+....+...+.+||+++
T Consensus 245 D~~~~--~~~~~~~~~----~~~~~~~~~i~~~gH~~~-~e~p~~~~~~i~~fl~~~ 294 (294)
T PLN02824 245 DPWEP--VELGRAYAN----FDAVEDFIVLPGVGHCPQ-DEAPELVNPLIESFVARH 294 (294)
T ss_pred CCCCC--hHHHHHHHh----cCCccceEEeCCCCCChh-hhCHHHHHHHHHHHHhcC
Confidence 99998 776655433 223357999999999876 677888999999999753
No 86
>PF02129 Peptidase_S15: X-Pro dipeptidyl-peptidase (S15 family); InterPro: IPR000383 This entry represents a domain found peptidases Xaa-Pro dipeptidyl-peptidase and glutaryl-7-aminocephalosporanic-acid acylase, which belong to MEROPS peptidase families S15 and S45 respectively []. It is also found in hydrolases from the CocE/NonD family. Cocaine esterase (CocE) hydrolyzes cocaine endowing the bacteria with the ability to utilise cocaine as a sole source of carbon and energy []. ; GO: 0004177 aminopeptidase activity, 0006508 proteolysis; PDB: 1LNS_A 3PUI_A 3PUH_B 1JU3_A 3I2I_A 3I2G_A 1JU4_A 3I2K_A 3IDA_A 3I2H_A ....
Probab=99.56 E-value=3.2e-14 Score=142.32 Aligned_cols=213 Identities=24% Similarity=0.327 Sum_probs=135.8
Q ss_pred CCceEEEEEEcCCCCCCCCCCCccEEEEEcCCCCcCcccCCcccCCCCccCCCCchHHHHHHhCCeEEEEcCCCCCCCCC
Q 004475 490 DGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGPSIPIIGEG 569 (751)
Q Consensus 490 ~~~~i~~~~~~P~~~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~v~~~~~~~~~g~g 569 (751)
||.+|.+.+|+| +.. ..+++|+||..|+.+.... ..................|+++||+|+. .+.+|.|
T Consensus 1 DGv~L~adv~~P-~~~--~~~~~P~il~~tpY~~~~~-----~~~~~~~~~~~~~~~~~~~~~~GY~vV~---~D~RG~g 69 (272)
T PF02129_consen 1 DGVRLAADVYRP-GAD--GGGPFPVILTRTPYGKGDQ-----TASDLAGANPGPPSARRPFAERGYAVVV---QDVRGTG 69 (272)
T ss_dssp TS-EEEEEEEEE---T--TSSSEEEEEEEESSTCTC------HHHHHHTTCHHSHGGGHHHHHTT-EEEE---EE-TTST
T ss_pred CCCEEEEEEEec-CCC--CCCcccEEEEccCcCCCCC-----cccchhhhhcccchhHHHHHhCCCEEEE---ECCcccc
Confidence 578999999999 211 2457999999999752110 0000000000000111238999999999 5666777
Q ss_pred CCCCCchh-HHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEccCCCCCCCC-c--cCc
Q 004475 570 DKLPNDRF-VEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGSYNKTLT-P--FGF 645 (751)
Q Consensus 570 ~~~~~~~~-~~~~~~d~~~~v~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~~d~~~~-~--~~~ 645 (751)
.|...... .....+|..++|+|+.++++.+ .||+++|.|++|..++.+|+..|..++|++...+..|.... . -+.
T Consensus 70 ~S~G~~~~~~~~e~~D~~d~I~W~~~Qpws~-G~VGm~G~SY~G~~q~~~A~~~~p~LkAi~p~~~~~d~~~~~~~~gG~ 148 (272)
T PF02129_consen 70 GSEGEFDPMSPNEAQDGYDTIEWIAAQPWSN-GKVGMYGISYGGFTQWAAAARRPPHLKAIVPQSGWSDLYRDSIYPGGA 148 (272)
T ss_dssp TS-S-B-TTSHHHHHHHHHHHHHHHHCTTEE-EEEEEEEETHHHHHHHHHHTTT-TTEEEEEEESE-SBTCCTSSEETTE
T ss_pred cCCCccccCChhHHHHHHHHHHHHHhCCCCC-CeEEeeccCHHHHHHHHHHhcCCCCceEEEecccCCcccccchhcCCc
Confidence 77654444 6778999999999999997755 69999999999999999999888899999999887764431 0 000
Q ss_pred ccc-cccch---------------------h-------------------------------hHHHHHhcCcccccCCCC
Q 004475 646 QTE-FRTLW---------------------E-------------------------------ATNVYIEMSPITHANKIK 672 (751)
Q Consensus 646 ~~~-~~~~~---------------------~-------------------------------~~~~~~~~~~~~~~~~~~ 672 (751)
... ....| . ..+.+.+.++...+.+++
T Consensus 149 ~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~i~ 228 (272)
T PF02129_consen 149 FRLGFFAGWEDLQSQQEDPQSRPAPDRDYLRERARYEALGDSPLGRLPRDPPYWDEWLDHPPYDPFWQERSPSERLDKID 228 (272)
T ss_dssp EBCCHHHHHHHHHHHHHHHTCCCCSSSHHHHHHHHHHCHHHHHHHHCHGGTHHHHHHHHT-SSSHHHHTTBHHHHHGG--
T ss_pred ccccchhHHHHHHHHhhcccCCCchhhhhhhhhhhhhhhhhHHHhhhccccHHHHHHHhCCCcCHHHHhCChHHHHhhCC
Confidence 000 00000 0 011223334444568899
Q ss_pred CCEEEEEcCCCCCCCCChHHHHHHHHHHHhCC-CcEEEEEeCCCCCc
Q 004475 673 KPILIIHGEVDDKVGLFPMQAERFFDALKGHG-ALSRLVLLPFEHHV 718 (751)
Q Consensus 673 ~P~li~~G~~D~~vp~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~H~ 718 (751)
+|+|+++|-.|... ...+.+.+++|+..+ ++.++++-|. +|.
T Consensus 229 vP~l~v~Gw~D~~~---~~~~~~~~~~l~~~~~~~~~Liigpw-~H~ 271 (272)
T PF02129_consen 229 VPVLIVGGWYDTLF---LRGALRAYEALRAPGSKPQRLIIGPW-THG 271 (272)
T ss_dssp SEEEEEEETTCSST---SHHHHHHHHHHCTTSTC-EEEEEESE-STT
T ss_pred CCEEEecccCCccc---chHHHHHHHHhhcCCCCCCEEEEeCC-CCC
Confidence 99999999999665 478899999999887 6778888886 474
No 87
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.56 E-value=1e-11 Score=127.31 Aligned_cols=271 Identities=10% Similarity=0.013 Sum_probs=156.3
Q ss_pred CceeEEEEEcCCCCeeeccCCCCccccceeeeeEEecCCcEEEEeecCCCCCCCCCCCCCCCCceeeccccccccchhhh
Q 004475 60 CKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTD 139 (751)
Q Consensus 60 ~~~~l~i~~~~~g~~~~lt~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (751)
....|+++++++++..+...... .+..++|+|||+.++.....
T Consensus 9 ~d~~v~~~d~~t~~~~~~~~~~~-----~~~~l~~~~dg~~l~~~~~~-------------------------------- 51 (300)
T TIGR03866 9 KDNTISVIDTATLEVTRTFPVGQ-----RPRGITLSKDGKLLYVCASD-------------------------------- 51 (300)
T ss_pred CCCEEEEEECCCCceEEEEECCC-----CCCceEECCCCCEEEEEECC--------------------------------
Confidence 34688999998887655443322 24568999999987665321
Q ss_pred hccCCccchhhhhhheeeEEEEEcC-CCCce-ecCCCceEEeeeeCCCCceEEEEEecCCcccccccCCCceeEEEEeCC
Q 004475 140 NLLKDEYDESLFDYYTTAQLVLGSL-DGTAK-DFGTPAVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTD 217 (751)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~l~~~~~-~G~~~-~lt~~~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~ 217 (751)
...|+++++ +|+.. .+........++|+|||+.+++.... ...+.+||+.
T Consensus 52 ----------------~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~------------~~~l~~~d~~ 103 (300)
T TIGR03866 52 ----------------SDTIQVIDLATGEVIGTLPSGPDPELFALHPNGKILYIANED------------DNLVTVIDIE 103 (300)
T ss_pred ----------------CCeEEEEECCCCcEEEeccCCCCccEEEECCCCCEEEEEcCC------------CCeEEEEECC
Confidence 046788888 56443 34333445678899999988776432 2368899998
Q ss_pred CceeeeeccCCCCCCCCCccCCccCCCceeeeecCCCceEEEEEeccCCCCccccCcccceeeccCCCCCCCCceEeEee
Q 004475 218 GKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKL 297 (751)
Q Consensus 218 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~spdG~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~ 297 (751)
+.+....... ...+..+.|+|||+. ++.... ....++.++.+ +.........
T Consensus 104 ~~~~~~~~~~-------------~~~~~~~~~~~dg~~-l~~~~~-----------~~~~~~~~d~~---~~~~~~~~~~ 155 (300)
T TIGR03866 104 TRKVLAEIPV-------------GVEPEGMAVSPDGKI-VVNTSE-----------TTNMAHFIDTK---TYEIVDNVLV 155 (300)
T ss_pred CCeEEeEeeC-------------CCCcceEEECCCCCE-EEEEec-----------CCCeEEEEeCC---CCeEEEEEEc
Confidence 6543211110 011346899999998 555431 11234555653 2222111111
Q ss_pred ceeEE-EEEecCCceEEEeeeecccceeEEEecCCCCCCcceeeeecccccccCCCCC-CCeeeCCCCCEEEEeeeecCC
Q 004475 298 DLRFS-VSWCDDSLALVNETWYKTSQTRTWLVCPGSKDVAPRVLFDRVFENVYSDPGS-PMMTRTSTGTNVIAKIKKEND 375 (751)
Q Consensus 298 ~~~~~-~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~-~~~~~spDG~~l~~~~~~~~~ 375 (751)
..... +.|+|||+.|+++.. ....|+++++.++ ...+.+... .......... ..++|+|||+.++....
T Consensus 156 ~~~~~~~~~s~dg~~l~~~~~---~~~~v~i~d~~~~-~~~~~~~~~-~~~~~~~~~~~~~i~~s~dg~~~~~~~~---- 226 (300)
T TIGR03866 156 DQRPRFAEFTADGKELWVSSE---IGGTVSVIDVATR-KVIKKITFE-IPGVHPEAVQPVGIKLTKDGKTAFVALG---- 226 (300)
T ss_pred CCCccEEEECCCCCEEEEEcC---CCCEEEEEEcCcc-eeeeeeeec-ccccccccCCccceEECCCCCEEEEEcC----
Confidence 22234 789999998877542 2246888888774 111222211 1000000001 12679999998765441
Q ss_pred cceEEEEccCCCCCCCCCceeEEEecCCCceeEEeeccchhhhhceeeeecCCcceeeccCCCEEEEEEecCCCCCeEEE
Q 004475 376 EQIYILLNGRGFTPEGNIPFLDLFDINTGSKERIWESNREKYFETAVALVFGQGEEDINLNQLKILTSKESKTEITQYHI 455 (751)
Q Consensus 376 ~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~l~~ 455 (751)
....|.+||+.+++......... ....++|+|||+.|+.... .-+.|.+
T Consensus 227 ----------------~~~~i~v~d~~~~~~~~~~~~~~------------~~~~~~~~~~g~~l~~~~~---~~~~i~v 275 (300)
T TIGR03866 227 ----------------PANRVAVVDAKTYEVLDYLLVGQ------------RVWQLAFTPDEKYLLTTNG---VSNDVSV 275 (300)
T ss_pred ----------------CCCeEEEEECCCCcEEEEEEeCC------------CcceEEECCCCCEEEEEcC---CCCeEEE
Confidence 12368899998877654322211 1123589999998875532 1346999
Q ss_pred EEcCCCce
Q 004475 456 LSWPLKKS 463 (751)
Q Consensus 456 ~~~~~g~~ 463 (751)
+|+.+++.
T Consensus 276 ~d~~~~~~ 283 (300)
T TIGR03866 276 IDVAALKV 283 (300)
T ss_pred EECCCCcE
Confidence 99998775
No 88
>PLN02965 Probable pheophorbidase
Probab=99.56 E-value=2.5e-13 Score=135.17 Aligned_cols=196 Identities=12% Similarity=0.104 Sum_probs=125.1
Q ss_pred cEEEEEcCCCCcCcccCCcccCCCCccCCCCchHHHHHHhCCeEEEEcCCCCCCCCCCCCCCc---hhHHHHHHHHHHHH
Q 004475 513 PCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGPSIPIIGEGDKLPND---RFVEQLVSSAEAAV 589 (751)
Q Consensus 513 P~vv~~HGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~v~~~~~~~~~g~g~~~~~~---~~~~~~~~d~~~~v 589 (751)
-+||++||.+. + ...|. .....|.+.||.|++ .+.+|+|.+.... ...++..+|+.+++
T Consensus 4 ~~vvllHG~~~-----------~---~~~w~-~~~~~L~~~~~~via---~Dl~G~G~S~~~~~~~~~~~~~a~dl~~~l 65 (255)
T PLN02965 4 IHFVFVHGASH-----------G---AWCWY-KLATLLDAAGFKSTC---VDLTGAGISLTDSNTVSSSDQYNRPLFALL 65 (255)
T ss_pred eEEEEECCCCC-----------C---cCcHH-HHHHHHhhCCceEEE---ecCCcCCCCCCCccccCCHHHHHHHHHHHH
Confidence 35999999641 1 11111 234456688999999 6777888775321 23456667677776
Q ss_pred HHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEccCCC---CCCCC------------ccCc--ccccccc
Q 004475 590 EEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGSY---NKTLT------------PFGF--QTEFRTL 652 (751)
Q Consensus 590 ~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~~---d~~~~------------~~~~--~~~~~~~ 652 (751)
+.+. + ..++.++||||||.+++.++.++|++++++|+.++.. ..... .+.. .......
T Consensus 66 ~~l~----~-~~~~~lvGhSmGG~ia~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (255)
T PLN02965 66 SDLP----P-DHKVILVGHSIGGGSVTEALCKFTDKISMAIYVAAAMVKPGSIISPRLKNVMEGTEKIWDYTFGEGPDKP 140 (255)
T ss_pred HhcC----C-CCCEEEEecCcchHHHHHHHHhCchheeEEEEEccccCCCCCCccHHHHhhhhccccceeeeeccCCCCC
Confidence 6541 1 1489999999999999999999999999999887641 10000 0000 0000000
Q ss_pred ----h---hhH-HHH-------------Hh--cCcc----------cccCCCCCCEEEEEcCCCCCCCCChHHHHHHHHH
Q 004475 653 ----W---EAT-NVY-------------IE--MSPI----------THANKIKKPILIIHGEVDDKVGLFPMQAERFFDA 699 (751)
Q Consensus 653 ----~---~~~-~~~-------------~~--~~~~----------~~~~~~~~P~li~~G~~D~~vp~~~~~~~~~~~~ 699 (751)
. ... ..+ .. ..+. ..+.++++|+|+++|++|..+| +..++.+.+.
T Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~vP~lvi~g~~D~~~~--~~~~~~~~~~ 218 (255)
T PLN02965 141 PTGIMMKPEFVRHYYYNQSPLEDYTLSSKLLRPAPVRAFQDLDKLPPNPEAEKVPRVYIKTAKDNLFD--PVRQDVMVEN 218 (255)
T ss_pred cchhhcCHHHHHHHHhcCCCHHHHHHHHHhcCCCCCcchhhhhhccchhhcCCCCEEEEEcCCCCCCC--HHHHHHHHHh
Confidence 0 000 000 00 0000 1233689999999999999998 8777777665
Q ss_pred HHhCCCcEEEEEeCCCCCcCCccccHHHHHHHHHHHHHH
Q 004475 700 LKGHGALSRLVLLPFEHHVYAARENVMHVIWETDRWLQK 738 (751)
Q Consensus 700 l~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~fl~~ 738 (751)
+. ..++++++++||... .+..+.+...+.+|+++
T Consensus 219 ~~----~a~~~~i~~~GH~~~-~e~p~~v~~~l~~~~~~ 252 (255)
T PLN02965 219 WP----PAQTYVLEDSDHSAF-FSVPTTLFQYLLQAVSS 252 (255)
T ss_pred CC----cceEEEecCCCCchh-hcCHHHHHHHHHHHHHH
Confidence 54 347899999999987 67788888888888765
No 89
>PLN00021 chlorophyllase
Probab=99.55 E-value=6e-13 Score=133.71 Aligned_cols=208 Identities=16% Similarity=0.113 Sum_probs=131.8
Q ss_pred ceEEEEEEcCCCCCCCCCCCccEEEEEcCCCCcCcccCCcccCCCCccCCCCchHHHHHHhCCeEEEEcCCCCCCCCCCC
Q 004475 492 VPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGPSIPIIGEGDK 571 (751)
Q Consensus 492 ~~i~~~~~~P~~~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~v~~~~~~~~~g~g~~ 571 (751)
..+.+.+++|.. .+++|+||++||.+.. ..+.......|+++||.|++++.++.. ..
T Consensus 37 ~~~p~~v~~P~~-----~g~~PvVv~lHG~~~~---------------~~~y~~l~~~Las~G~~VvapD~~g~~---~~ 93 (313)
T PLN00021 37 PPKPLLVATPSE-----AGTYPVLLFLHGYLLY---------------NSFYSQLLQHIASHGFIVVAPQLYTLA---GP 93 (313)
T ss_pred CCceEEEEeCCC-----CCCCCEEEEECCCCCC---------------cccHHHHHHHHHhCCCEEEEecCCCcC---CC
Confidence 468999999975 3468999999996421 111224566788999999996654422 11
Q ss_pred CCCchhHHHHHHHHHHHHHHHHHc--------CCCCCCcEEEEEeChHHHHHHHHHHhCCC-----ceeEEEEccCCCCC
Q 004475 572 LPNDRFVEQLVSSAEAAVEEVVRR--------GVADPSRIAVGGHSYGAFMTAHLLAHAPH-----LFCCGIARSGSYNK 638 (751)
Q Consensus 572 ~~~~~~~~~~~~d~~~~v~~l~~~--------~~id~~~i~l~G~S~GG~~a~~~a~~~p~-----~~~~~v~~~~~~d~ 638 (751)
. . ...++++.++++|+.+. ..+|.++++++|||+||.+|+.++...++ +++++|++.|+...
T Consensus 94 ~----~-~~~i~d~~~~~~~l~~~l~~~l~~~~~~d~~~v~l~GHS~GG~iA~~lA~~~~~~~~~~~v~ali~ldPv~g~ 168 (313)
T PLN00021 94 D----G-TDEIKDAAAVINWLSSGLAAVLPEGVRPDLSKLALAGHSRGGKTAFALALGKAAVSLPLKFSALIGLDPVDGT 168 (313)
T ss_pred C----c-hhhHHHHHHHHHHHHhhhhhhcccccccChhheEEEEECcchHHHHHHHhhccccccccceeeEEeecccccc
Confidence 1 1 22345666777777652 23677899999999999999999998864 57889988886432
Q ss_pred CCCccCcccccccchhhHHHHHhcCcccccCCCCCCEEEEEcCCCC---------CCCCChHHHHHHHHHHHhCCCcEEE
Q 004475 639 TLTPFGFQTEFRTLWEATNVYIEMSPITHANKIKKPILIIHGEVDD---------KVGLFPMQAERFFDALKGHGALSRL 709 (751)
Q Consensus 639 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~li~~G~~D~---------~vp~~~~~~~~~~~~l~~~~~~~~~ 709 (751)
.... ...++ .+ .+. ...-++..|+|++++..|. ..| +..+-.++++.++ .+..+
T Consensus 169 ~~~~------~~~p~----il-~~~--~~s~~~~~P~liig~g~~~~~~~~~~p~~ap-~~~~~~~f~~~~~---~~~~~ 231 (313)
T PLN00021 169 SKGK------QTPPP----VL-TYA--PHSFNLDIPVLVIGTGLGGEPRNPLFPPCAP-DGVNHAEFFNECK---APAVH 231 (313)
T ss_pred cccc------CCCCc----cc-ccC--cccccCCCCeEEEecCCCcccccccccccCC-CCCCHHHHHHhcC---CCeee
Confidence 2110 00000 00 000 1122367999999999763 122 1233466776554 46688
Q ss_pred EEeCCCCCcCCcccc----------------------HHHHHHHHHHHHHHHhcCCC
Q 004475 710 VLLPFEHHVYAAREN----------------------VMHVIWETDRWLQKYCLSNT 744 (751)
Q Consensus 710 ~~~~~~~H~~~~~~~----------------------~~~~~~~~~~fl~~~l~~~~ 744 (751)
.+.++++|.-...+. ++.....++.||..++....
T Consensus 232 ~~~~~~gH~~~~~~~~~~~~~~~~~~~c~~g~~~~~~r~~~~g~~~aFl~~~l~~~~ 288 (313)
T PLN00021 232 FVAKDYGHMDMLDDDTSGIRGKITGCMCKNGKPRKPMRRFVGGAVVAFLKAYLEGDT 288 (313)
T ss_pred eeecCCCcceeecCCCccccccccccccCCCCchHHHHHHHHHHHHHHHHHHhcCch
Confidence 888999996431111 22344568999999886543
No 90
>PLN02679 hydrolase, alpha/beta fold family protein
Probab=99.55 E-value=1.5e-13 Score=143.38 Aligned_cols=199 Identities=17% Similarity=0.164 Sum_probs=122.5
Q ss_pred ccEEEEEcCCCCcCcccCCcccCCCCccCCCCchHHHHHHhCCeEEEEcCCCCCCCCCCCCCCc---hhHHHHHHHHHHH
Q 004475 512 LPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGPSIPIIGEGDKLPND---RFVEQLVSSAEAA 588 (751)
Q Consensus 512 ~P~vv~~HGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~v~~~~~~~~~g~g~~~~~~---~~~~~~~~d~~~~ 588 (751)
.|.||++||.+. ....|. .....| ..+|.|++ ++.+|+|.+.... .......+++.+.
T Consensus 88 gp~lvllHG~~~--------------~~~~w~-~~~~~L-~~~~~via---~Dl~G~G~S~~~~~~~~~~~~~a~~l~~~ 148 (360)
T PLN02679 88 GPPVLLVHGFGA--------------SIPHWR-RNIGVL-AKNYTVYA---IDLLGFGASDKPPGFSYTMETWAELILDF 148 (360)
T ss_pred CCeEEEECCCCC--------------CHHHHH-HHHHHH-hcCCEEEE---ECCCCCCCCCCCCCccccHHHHHHHHHHH
Confidence 378999999641 111111 122333 45899999 6677888775432 1234455555555
Q ss_pred HHHHHHcCCCCCCcEEEEEeChHHHHHHHHHH-hCCCceeEEEEccCCCCCCC----CccCc----------------c-
Q 004475 589 VEEVVRRGVADPSRIAVGGHSYGAFMTAHLLA-HAPHLFCCGIARSGSYNKTL----TPFGF----------------Q- 646 (751)
Q Consensus 589 v~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~-~~p~~~~~~v~~~~~~d~~~----~~~~~----------------~- 646 (751)
++.+ ...++.|+||||||.+++.+++ ++|++++++|++++...... ..+.. .
T Consensus 149 l~~l------~~~~~~lvGhS~Gg~ia~~~a~~~~P~rV~~LVLi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (360)
T PLN02679 149 LEEV------VQKPTVLIGNSVGSLACVIAASESTRDLVRGLVLLNCAGGMNNKAVVDDWRIKLLLPLLWLIDFLLKQRG 222 (360)
T ss_pred HHHh------cCCCeEEEEECHHHHHHHHHHHhcChhhcCEEEEECCccccccccccchHHHhhhcchHHHHHHHhhchh
Confidence 5533 2368999999999999998887 46899999999886421100 00000 0
Q ss_pred ------cc---cccc-------h--------hh-------------HHHHHh-------cCcccccCCCCCCEEEEEcCC
Q 004475 647 ------TE---FRTL-------W--------EA-------------TNVYIE-------MSPITHANKIKKPILIIHGEV 682 (751)
Q Consensus 647 ------~~---~~~~-------~--------~~-------------~~~~~~-------~~~~~~~~~~~~P~li~~G~~ 682 (751)
.. .... + .. ...+.. ......+.++++|+|+++|++
T Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~PtLii~G~~ 302 (360)
T PLN02679 223 IASALFNRVKQRDNLKNILLSVYGNKEAVDDELVEIIRGPADDEGALDAFVSIVTGPPGPNPIKLIPRISLPILVLWGDQ 302 (360)
T ss_pred hHHHHHHHhcCHHHHHHHHHHhccCcccCCHHHHHHHHhhccCCChHHHHHHHHhcCCCCCHHHHhhhcCCCEEEEEeCC
Confidence 00 0000 0 00 000000 011123567899999999999
Q ss_pred CCCCCCChHHH-HHHHHHHHhCCCcEEEEEeCCCCCcCCccccHHHHHHHHHHHHHH
Q 004475 683 DDKVGLFPMQA-ERFFDALKGHGALSRLVLLPFEHHVYAARENVMHVIWETDRWLQK 738 (751)
Q Consensus 683 D~~vp~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~fl~~ 738 (751)
|..+| +... .++++.+.+.-.++++++++++||... .+..+.+.+.+.+||.+
T Consensus 303 D~~~p--~~~~~~~~~~~l~~~ip~~~l~~i~~aGH~~~-~E~Pe~~~~~I~~FL~~ 356 (360)
T PLN02679 303 DPFTP--LDGPVGKYFSSLPSQLPNVTLYVLEGVGHCPH-DDRPDLVHEKLLPWLAQ 356 (360)
T ss_pred CCCcC--chhhHHHHHHhhhccCCceEEEEcCCCCCCcc-ccCHHHHHHHHHHHHHh
Confidence 99998 5532 234445544435679999999999876 67788999999999975
No 91
>PF10503 Esterase_phd: Esterase PHB depolymerase
Probab=99.54 E-value=1.3e-13 Score=129.25 Aligned_cols=188 Identities=22% Similarity=0.215 Sum_probs=112.6
Q ss_pred EEEEEcCCCCCCCCCCCccEEEEEcCCCCcCcccCCcccCCCCccCCCCchHHHHHH-hCCeEEEEcCCCCC---CCCCC
Q 004475 495 TATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFL-ARRFAVLAGPSIPI---IGEGD 570 (751)
Q Consensus 495 ~~~~~~P~~~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~G~~v~~~~~~~~---~g~g~ 570 (751)
...+|+|+... +++.|+||++||++... ..+... .....++ ++||+|+.|..... .++-.
T Consensus 2 ~Y~lYvP~~~~---~~~~PLVv~LHG~~~~a-----------~~~~~~--s~~~~lAd~~GfivvyP~~~~~~~~~~cw~ 65 (220)
T PF10503_consen 2 SYRLYVPPGAP---RGPVPLVVVLHGCGQSA-----------EDFAAG--SGWNALADREGFIVVYPEQSRRANPQGCWN 65 (220)
T ss_pred cEEEecCCCCC---CCCCCEEEEeCCCCCCH-----------HHHHhh--cCHHHHhhcCCeEEEcccccccCCCCCccc
Confidence 56889998643 23589999999975321 222211 1122345 47999998654211 01100
Q ss_pred CC-CCchhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEccCCCCCCCC-ccC-ccc
Q 004475 571 KL-PNDRFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGSYNKTLT-PFG-FQT 647 (751)
Q Consensus 571 ~~-~~~~~~~~~~~d~~~~v~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~~d~~~~-~~~-~~~ 647 (751)
-. ............+..+++++.++..||++||++.|+|.||.|+..++..+|+.|+++...++...-... ... +..
T Consensus 66 w~~~~~~~g~~d~~~i~~lv~~v~~~~~iD~~RVyv~G~S~Gg~ma~~la~~~pd~faa~a~~sG~~~~~a~~~~~a~~~ 145 (220)
T PF10503_consen 66 WFSDDQQRGGGDVAFIAALVDYVAARYNIDPSRVYVTGLSNGGMMANVLACAYPDLFAAVAVVSGVPYGCAASGASALSA 145 (220)
T ss_pred ccccccccCccchhhHHHHHHhHhhhcccCCCceeeEEECHHHHHHHHHHHhCCccceEEEeecccccccccCcccHHHH
Confidence 00 001111223456778899999999999999999999999999999999999999999998886321100 000 000
Q ss_pred ccccchhhHHHH-HhcCcccccCCCCCCEEEEEcCCCCCCCCChHHHHHHHHHHHh
Q 004475 648 EFRTLWEATNVY-IEMSPITHANKIKKPILIIHGEVDDKVGLFPMQAERFFDALKG 702 (751)
Q Consensus 648 ~~~~~~~~~~~~-~~~~~~~~~~~~~~P~li~~G~~D~~vp~~~~~~~~~~~~l~~ 702 (751)
...-.-..+... ....... ..-..|++++||+.|..|. +.++.++.+++..
T Consensus 146 m~~g~~~~p~~~~~a~~~~g--~~~~~P~~v~hG~~D~tV~--~~n~~~~~~q~~~ 197 (220)
T PF10503_consen 146 MRSGPRPAPAAAWGARSDAG--AYPGYPRIVFHGTADTTVN--PQNADQLVAQWLN 197 (220)
T ss_pred hhCCCCCChHHHHHhhhhcc--CCCCCCEEEEecCCCCccC--cchHHHHHHHHHH
Confidence 000000001100 0000000 0113699999999999998 8888888888765
No 92
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=99.53 E-value=3.3e-12 Score=115.16 Aligned_cols=275 Identities=13% Similarity=0.132 Sum_probs=186.5
Q ss_pred CCcceeEEeecCCCCCCCCcccccCCCCcccccceeecCCCCeEEEEEeecccccccCCceeEEEEEcCCCCeeeccCCC
Q 004475 2 PFFTGIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESP 81 (751)
Q Consensus 2 ~~~~~~~~~~~~~~~~~g~~~~l~~~~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~~~~~l~i~~~~~g~~~~lt~~~ 81 (751)
+|...|..|.+.+ |.=..-...+++ .+....+.||++.||- .+..+|.++|+.++.+.++...+
T Consensus 17 ~YDhTIRfWqa~t----G~C~rTiqh~ds-qVNrLeiTpdk~~LAa-----------a~~qhvRlyD~~S~np~Pv~t~e 80 (311)
T KOG0315|consen 17 GYDHTIRFWQALT----GICSRTIQHPDS-QVNRLEITPDKKDLAA-----------AGNQHVRLYDLNSNNPNPVATFE 80 (311)
T ss_pred cCcceeeeeehhc----CeEEEEEecCcc-ceeeEEEcCCcchhhh-----------ccCCeeEEEEccCCCCCceeEEe
Confidence 6788899999999 887765545665 5889999999999999 56689999999999887775544
Q ss_pred CccccceeeeeEEecCCcEEEEeecCCCCCCCCCCCCCCCCceeeccccccccchhhhhccCCccchhhhhhheeeEEEE
Q 004475 82 DICLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVL 161 (751)
Q Consensus 82 ~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 161 (751)
.+. ..+..+.|--||++++..+++ +.+.+
T Consensus 81 ~h~--kNVtaVgF~~dgrWMyTgseD-------------------------------------------------gt~kI 109 (311)
T KOG0315|consen 81 GHT--KNVTAVGFQCDGRWMYTGSED-------------------------------------------------GTVKI 109 (311)
T ss_pred ccC--CceEEEEEeecCeEEEecCCC-------------------------------------------------ceEEE
Confidence 431 246788999999999987543 34555
Q ss_pred EcC-CCCceecCCC-ceEEeeeeCCCCceEEEEEecCCcccccccCCCceeEEEEeCCCcee-eeeccCCCCCCCCCccC
Q 004475 162 GSL-DGTAKDFGTP-AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLV-RELCDLPPAEDIPVCYN 238 (751)
Q Consensus 162 ~~~-~G~~~~lt~~-~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~-~~l~~~~~~~~~~~~~~ 238 (751)
+|+ +=..+++-.. ..+..+...|.-..|+.... ...|++||+....- .++.+
T Consensus 110 WdlR~~~~qR~~~~~spVn~vvlhpnQteLis~dq-------------sg~irvWDl~~~~c~~~liP------------ 164 (311)
T KOG0315|consen 110 WDLRSLSCQRNYQHNSPVNTVVLHPNQTELISGDQ-------------SGNIRVWDLGENSCTHELIP------------ 164 (311)
T ss_pred EeccCcccchhccCCCCcceEEecCCcceEEeecC-------------CCcEEEEEccCCccccccCC------------
Confidence 566 3344455444 66778889998888876422 34699999976532 22211
Q ss_pred CccCCCceeeeecCCCceEEEEEeccCCCCccccCcccceeeccCCCCCC-CCceEeE---eeceeEE-EEEecCCceEE
Q 004475 239 SVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEG-EKPEILH---KLDLRFS-VSWCDDSLALV 313 (751)
Q Consensus 239 ~~~~~~~~~~~spdG~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~~~~l~---~~~~~~~-~~~spdg~~l~ 313 (751)
.....++.++..|||+. ++.+. .++..|++++-...+ ....++. ..++.+. ..+|||+++|+
T Consensus 165 e~~~~i~sl~v~~dgsm-l~a~n------------nkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k~la 231 (311)
T KOG0315|consen 165 EDDTSIQSLTVMPDGSM-LAAAN------------NKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDVKYLA 231 (311)
T ss_pred CCCcceeeEEEcCCCcE-EEEec------------CCccEEEEEccCCCccccceEhhheecccceEEEEEECCCCcEEE
Confidence 11234668899999998 55543 567899988732111 1223333 3445555 78999999998
Q ss_pred EeeeecccceeEEEecCCCCCCcceeeeecccccccCCCCCCCeeeCCCCCEEEEeeeecCCcceEEEEccCCCCCCCCC
Q 004475 314 NETWYKTSQTRTWLVCPGSKDVAPRVLFDRVFENVYSDPGSPMMTRTSTGTNVIAKIKKENDEQIYILLNGRGFTPEGNI 393 (751)
Q Consensus 314 ~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~spDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 393 (751)
..+. ..++++.+.++- .............+|. -+||.||.+|+..+.+
T Consensus 232 t~ss----dktv~iwn~~~~-~kle~~l~gh~rWvWd------c~FS~dg~YlvTassd--------------------- 279 (311)
T KOG0315|consen 232 TCSS----DKTVKIWNTDDF-FKLELVLTGHQRWVWD------CAFSADGEYLVTASSD--------------------- 279 (311)
T ss_pred eecC----CceEEEEecCCc-eeeEEEeecCCceEEe------eeeccCccEEEecCCC---------------------
Confidence 7662 235566666553 2223334444456665 6799999999888743
Q ss_pred ceeEEEecCCCceeEEeecc
Q 004475 394 PFLDLFDINTGSKERIWESN 413 (751)
Q Consensus 394 ~~l~~~d~~~g~~~~l~~~~ 413 (751)
....+|++..++..+.+...
T Consensus 280 ~~~rlW~~~~~k~v~qy~gh 299 (311)
T KOG0315|consen 280 HTARLWDLSAGKEVRQYQGH 299 (311)
T ss_pred CceeecccccCceeeecCCc
Confidence 26778899988877776543
No 93
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=99.53 E-value=8.2e-12 Score=123.97 Aligned_cols=290 Identities=17% Similarity=0.139 Sum_probs=144.8
Q ss_pred cceeEEeecCCCCCCCCcccccCCCCcccccceeecCCCCeEEEEEeecccccccCCceeEEEEEcCCCCeeeccCCCCc
Q 004475 4 FTGIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDI 83 (751)
Q Consensus 4 ~~~~~~~~~~~~~~~g~~~~l~~~~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~~~~~l~i~~~~~g~~~~lt~~~~~ 83 (751)
..|+|++||.+ ++.+|||..+.. ......+||+++.|+|+. ...+|+.+++++.+.+.|...+..
T Consensus 59 ~~nly~lDL~t----~~i~QLTdg~g~-~~~g~~~s~~~~~~~Yv~----------~~~~l~~vdL~T~e~~~vy~~p~~ 123 (386)
T PF14583_consen 59 NRNLYLLDLAT----GEITQLTDGPGD-NTFGGFLSPDDRALYYVK----------NGRSLRRVDLDTLEERVVYEVPDD 123 (386)
T ss_dssp S-EEEEEETTT-----EEEE---SS-B--TTT-EE-TTSSEEEEEE----------TTTEEEEEETTT--EEEEEE--TT
T ss_pred CcceEEEEccc----CEEEECccCCCC-CccceEEecCCCeEEEEE----------CCCeEEEEECCcCcEEEEEECCcc
Confidence 46999999999 999999965443 344789999999999974 336899999999999988776653
Q ss_pred cccceeeeeEEe--cCCcEEEEeecCCCCCCCCCCCCCCCCceeeccccccccchhhhhccCCccchhhhhhheeeEEEE
Q 004475 84 CLNAVFGSFVWV--NNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVL 161 (751)
Q Consensus 84 ~~~~~~~~~~ws--pDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 161 (751)
....-.|+ .|+..++..... +.. .....++......+.......|+.
T Consensus 124 ----~~g~gt~v~n~d~t~~~g~e~~-~~d--------------------------~~~l~~~~~f~e~~~a~p~~~i~~ 172 (386)
T PF14583_consen 124 ----WKGYGTWVANSDCTKLVGIEIS-RED--------------------------WKPLTKWKGFREFYEARPHCRIFT 172 (386)
T ss_dssp ----EEEEEEEEE-TTSSEEEEEEEE-GGG-------------------------------SHHHHHHHHHC---EEEEE
T ss_pred ----cccccceeeCCCccEEEEEEEe-ehh--------------------------ccCccccHHHHHHHhhCCCceEEE
Confidence 22345675 457666555221 000 000000111111111124478999
Q ss_pred EcC-CCCceecCCC-ceEEeeeeCC-CCceEEEEEecCCcccccccCCCceeEEEEeCCCceeeeeccCCCCCCCCCccC
Q 004475 162 GSL-DGTAKDFGTP-AVYTAVEPSP-DQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYN 238 (751)
Q Consensus 162 ~~~-~G~~~~lt~~-~~~~~~~~Sp-DG~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~ 238 (751)
+++ +|+.+.+... ..+.=+.+|| |...|.| ..+.+ .......||+++.+++..+.+....-.
T Consensus 173 idl~tG~~~~v~~~~~wlgH~~fsP~dp~li~f-CHEGp------w~~Vd~RiW~i~~dg~~~~~v~~~~~~-------- 237 (386)
T PF14583_consen 173 IDLKTGERKVVFEDTDWLGHVQFSPTDPTLIMF-CHEGP------WDLVDQRIWTINTDGSNVKKVHRRMEG-------- 237 (386)
T ss_dssp EETTT--EEEEEEESS-EEEEEEETTEEEEEEE-EE-S-------TTTSS-SEEEEETTS---EESS---TT--------
T ss_pred EECCCCceeEEEecCccccCcccCCCCCCEEEE-eccCC------cceeceEEEEEEcCCCcceeeecCCCC--------
Confidence 999 8887777554 5566677788 5556666 44433 222345799999999888777443211
Q ss_pred CccCCCceeeeecCCCceEEEEEeccCCCCccccCcccceeeccCCCCCCCCceEeEeeceeEE-EEEecCCceEEEeee
Q 004475 239 SVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFS-VSWCDDSLALVNETW 317 (751)
Q Consensus 239 ~~~~~~~~~~~spdG~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~-~~~spdg~~l~~~~~ 317 (751)
..+..=-|+|||+. |+|.....++. ..-|+-++++ ....+.+...+. .. +.-++||+.++--..
T Consensus 238 ---e~~gHEfw~~DG~~-i~y~~~~~~~~-------~~~i~~~d~~---t~~~~~~~~~p~-~~H~~ss~Dg~L~vGDG~ 302 (386)
T PF14583_consen 238 ---ESVGHEFWVPDGST-IWYDSYTPGGQ-------DFWIAGYDPD---TGERRRLMEMPW-CSHFMSSPDGKLFVGDGG 302 (386)
T ss_dssp ---EEEEEEEE-TTSS--EEEEEEETTT---------EEEEEE-TT---T--EEEEEEE-S-EEEEEE-TTSSEEEEEE-
T ss_pred ---cccccccccCCCCE-EEEEeecCCCC-------ceEEEeeCCC---CCCceEEEeCCc-eeeeEEcCCCCEEEecCC
Confidence 12234489999999 77755332211 1245556654 334455555443 44 677899997653221
Q ss_pred ecc------------cceeEEEecCCCCCCcceeeeecccccc--cC--CCCCCCeeeCCCCCEEEEeee
Q 004475 318 YKT------------SQTRTWLVCPGSKDVAPRVLFDRVFENV--YS--DPGSPMMTRTSTGTNVIAKIK 371 (751)
Q Consensus 318 ~~~------------~~~~l~~~~~~~~~~~~~~l~~~~~~~~--~~--~~~~~~~~~spDG~~l~~~~~ 371 (751)
..+ ...-||+.++..+ ....|........ .. ....|-|+|||||++|+|.+.
T Consensus 303 d~p~~v~~~~~~~~~~~p~i~~~~~~~~--~~~~l~~h~~sw~v~~~~~q~~hPhp~FSPDgk~VlF~Sd 370 (386)
T PF14583_consen 303 DAPVDVADAGGYKIENDPWIYLFDVEAG--RFRKLARHDTSWKVLDGDRQVTHPHPSFSPDGKWVLFRSD 370 (386)
T ss_dssp ------------------EEEEEETTTT--EEEEEEE-------BTTBSSTT----EE-TTSSEEEEEE-
T ss_pred CCCccccccccceecCCcEEEEeccccC--ceeeeeeccCcceeecCCCccCCCCCccCCCCCEEEEECC
Confidence 100 1124667777763 4445544432111 00 113455889999999999994
No 94
>PRK06489 hypothetical protein; Provisional
Probab=99.53 E-value=5.4e-13 Score=139.58 Aligned_cols=173 Identities=18% Similarity=0.208 Sum_probs=107.1
Q ss_pred hCCeEEEEcCCCCCCCCCCCCCCch---------hHHHHHHHHHHHHHHHHHcCCCCCCcEE-EEEeChHHHHHHHHHHh
Q 004475 552 ARRFAVLAGPSIPIIGEGDKLPNDR---------FVEQLVSSAEAAVEEVVRRGVADPSRIA-VGGHSYGAFMTAHLLAH 621 (751)
Q Consensus 552 ~~G~~v~~~~~~~~~g~g~~~~~~~---------~~~~~~~d~~~~v~~l~~~~~id~~~i~-l~G~S~GG~~a~~~a~~ 621 (751)
.++|.|++ .+.+|+|.+..... ...+..+++. ..+.+.- +.+++. ++||||||.+|+.++.+
T Consensus 103 ~~~~~Via---~Dl~GhG~S~~p~~~~~~~~~~~~~~~~a~~~~---~~l~~~l--gi~~~~~lvG~SmGG~vAl~~A~~ 174 (360)
T PRK06489 103 ASKYFIIL---PDGIGHGKSSKPSDGLRAAFPRYDYDDMVEAQY---RLVTEGL--GVKHLRLILGTSMGGMHAWMWGEK 174 (360)
T ss_pred ccCCEEEE---eCCCCCCCCCCCCcCCCCCCCcccHHHHHHHHH---HHHHHhc--CCCceeEEEEECHHHHHHHHHHHh
Confidence 57899999 66678887643321 1223333332 3333322 234664 89999999999999999
Q ss_pred CCCceeEEEEccCCCCCCC-Cc----------------c---Cccccc-----------------------ccch-hh--
Q 004475 622 APHLFCCGIARSGSYNKTL-TP----------------F---GFQTEF-----------------------RTLW-EA-- 655 (751)
Q Consensus 622 ~p~~~~~~v~~~~~~d~~~-~~----------------~---~~~~~~-----------------------~~~~-~~-- 655 (751)
+|++++++|++++...... .. + .+.... .... ..
T Consensus 175 ~P~~V~~LVLi~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (360)
T PRK06489 175 YPDFMDALMPMASQPTEMSGRNWMWRRMLIESIRNDPAWNNGNYTTQPPSLKRANPMFAIATSGGTLAYQAQAPTRAAAD 254 (360)
T ss_pred CchhhheeeeeccCcccccHHHHHHHHHHHHHHHhCCCCCCCCCCCCHHHHHHHHHHHHHHHhCCHHHHHHhcCChHHHH
Confidence 9999999998876421000 00 0 000000 0000 00
Q ss_pred --------------HHHH-------HhcCcccccCCCCCCEEEEEcCCCCCCCCChHHH--HHHHHHHHhCCCcEEEEEe
Q 004475 656 --------------TNVY-------IEMSPITHANKIKKPILIIHGEVDDKVGLFPMQA--ERFFDALKGHGALSRLVLL 712 (751)
Q Consensus 656 --------------~~~~-------~~~~~~~~~~~~~~P~li~~G~~D~~vp~~~~~~--~~~~~~l~~~~~~~~~~~~ 712 (751)
...+ ...+....+.++++|+|+++|++|..+| +..+ +.+.+.++ ..+++++
T Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~L~~I~~PvLvI~G~~D~~~p--~~~~~~~~la~~ip----~a~l~~i 328 (360)
T PRK06489 255 KLVDERLAAPVTADANDFLYQWDSSRDYNPSPDLEKIKAPVLAINSADDERNP--PETGVMEAALKRVK----HGRLVLI 328 (360)
T ss_pred HHHHHHHHhhhhcCHHHHHHHHHHhhccChHHHHHhCCCCEEEEecCCCcccC--hhhHHHHHHHHhCc----CCeEEEE
Confidence 0000 0011123456789999999999999998 6654 45555543 4589999
Q ss_pred CCC----CCcCCccccHHHHHHHHHHHHHHHh
Q 004475 713 PFE----HHVYAARENVMHVIWETDRWLQKYC 740 (751)
Q Consensus 713 ~~~----~H~~~~~~~~~~~~~~~~~fl~~~l 740 (751)
|++ ||... +....+.+.+.+||++.-
T Consensus 329 ~~a~~~~GH~~~--e~P~~~~~~i~~FL~~~~ 358 (360)
T PRK06489 329 PASPETRGHGTT--GSAKFWKAYLAEFLAQVP 358 (360)
T ss_pred CCCCCCCCcccc--cCHHHHHHHHHHHHHhcc
Confidence 996 99874 578889999999998653
No 95
>TIGR03695 menH_SHCHC 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase. This protein catalyzes the formation of SHCHC, or (1 R,6 R)-2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate, by elmination of pyruvate from 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate (SEPHCHC). Note that SHCHC synthase activity previously was attributed to MenD, which in fact is SEPHCHC synthase.
Probab=99.52 E-value=3.1e-13 Score=134.38 Aligned_cols=195 Identities=19% Similarity=0.133 Sum_probs=115.5
Q ss_pred cEEEEEcCCCCcCcccCCcccCCCCccCCCCchHHHHHHhCCeEEEEcCCCCCCCCCCCCCCchhHHHHHHHHHHH-HHH
Q 004475 513 PCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGPSIPIIGEGDKLPNDRFVEQLVSSAEAA-VEE 591 (751)
Q Consensus 513 P~vv~~HGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~v~~~~~~~~~g~g~~~~~~~~~~~~~~d~~~~-v~~ 591 (751)
|+||++||.+. ....+ ......|+ +||.|++ ++.+|+|.+...........+++.+. +..
T Consensus 2 ~~vv~~hG~~~-----------~~~~~----~~~~~~L~-~~~~v~~---~d~~g~G~s~~~~~~~~~~~~~~~~~~~~~ 62 (251)
T TIGR03695 2 PVLVFLHGFLG-----------SGADW----QALIELLG-PHFRCLA---IDLPGHGSSQSPDEIERYDFEEAAQDILAT 62 (251)
T ss_pred CEEEEEcCCCC-----------chhhH----HHHHHHhc-ccCeEEE---EcCCCCCCCCCCCccChhhHHHHHHHHHHH
Confidence 78999999541 11111 13344555 8999999 56667777644322112222333332 444
Q ss_pred HHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEccCCCCCCCCc-----cC--------cccc----------
Q 004475 592 VVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGSYNKTLTP-----FG--------FQTE---------- 648 (751)
Q Consensus 592 l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~~d~~~~~-----~~--------~~~~---------- 648 (751)
+.+. .+.+++.++|||+||.+|+.++.++|+.++++++.++........ .. +...
T Consensus 63 ~~~~--~~~~~~~l~G~S~Gg~ia~~~a~~~~~~v~~lil~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (251)
T TIGR03695 63 LLDQ--LGIEPFFLVGYSMGGRIALYYALQYPERVQGLILESGSPGLATEEERAARRQNDEQLAQRFEQEGLEAFLDDWY 140 (251)
T ss_pred HHHH--cCCCeEEEEEeccHHHHHHHHHHhCchheeeeEEecCCCCcCchHhhhhhhhcchhhhhHHHhcCccHHHHHHh
Confidence 4333 234689999999999999999999999999999988753211100 00 0000
Q ss_pred ----cc----cchhhH----------------HHHH------hcCcccccCCCCCCEEEEEcCCCCCCCCChHHHHHHHH
Q 004475 649 ----FR----TLWEAT----------------NVYI------EMSPITHANKIKKPILIIHGEVDDKVGLFPMQAERFFD 698 (751)
Q Consensus 649 ----~~----~~~~~~----------------~~~~------~~~~~~~~~~~~~P~li~~G~~D~~vp~~~~~~~~~~~ 698 (751)
.. ...... ..+. .......+.++++|+|+++|++|..++ ... +
T Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~i~g~~D~~~~---~~~----~ 213 (251)
T TIGR03695 141 QQPLFASQKNLPPEQRQALRAKRLANNPEGLAKMLRATGLGKQPSLWPKLQALTIPVLYLCGEKDEKFV---QIA----K 213 (251)
T ss_pred cCceeeecccCChHHhHHHHHhcccccchHHHHHHHHhhhhcccchHHHhhCCCCceEEEeeCcchHHH---HHH----H
Confidence 00 000000 0000 001122356789999999999998643 333 3
Q ss_pred HHHhCCCcEEEEEeCCCCCcCCccccHHHHHHHHHHHH
Q 004475 699 ALKGHGALSRLVLLPFEHHVYAARENVMHVIWETDRWL 736 (751)
Q Consensus 699 ~l~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~fl 736 (751)
.+.+....++++++|+++|... .+..+.+...+.+||
T Consensus 214 ~~~~~~~~~~~~~~~~~gH~~~-~e~~~~~~~~i~~~l 250 (251)
T TIGR03695 214 EMQKLLPNLTLVIIANAGHNIH-LENPEAFAKILLAFL 250 (251)
T ss_pred HHHhcCCCCcEEEEcCCCCCcC-ccChHHHHHHHHHHh
Confidence 3344445678999999999876 455677888888887
No 96
>PF08840 BAAT_C: BAAT / Acyl-CoA thioester hydrolase C terminal; InterPro: IPR014940 Acyl-CoA thioesterases are a group of enzymes that catalyse the hydrolysis of acyl-CoAs to the free fatty acid and coenzyme A (CoASH), providing the potential to regulate intracellular levels of acyl-CoAs, free fatty acids and CoASH. Bile acid-CoA:amino acid N-acetyltransferase (BAAT) is involved in bile acid metabolism and may also act as an acyl-CoA thioesterase that regulates intracellular levels of free fatty acids []. This entry represents a catalytic domain is found at the C terminus of acyl-CoA thioester hydrolases and bile acid-CoA:amino acid N-acetyltransferases. ; PDB: 3K2I_B 3HLK_B.
Probab=99.52 E-value=1.9e-13 Score=129.99 Aligned_cols=157 Identities=22% Similarity=0.188 Sum_probs=94.7
Q ss_pred HHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEccCCCCCCCC---------ccCcccc--ccc
Q 004475 583 SSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGSYNKTLT---------PFGFQTE--FRT 651 (751)
Q Consensus 583 ~d~~~~v~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~~d~~~~---------~~~~~~~--~~~ 651 (751)
+-+.++++||++++.+++++|+|+|.|.||-+|+.+|+..| .++++|+.+|..-.... +...... ...
T Consensus 4 Eyfe~Ai~~L~~~p~v~~~~Igi~G~SkGaelALllAs~~~-~i~avVa~~ps~~~~~~~~~~~~~~~~lp~~~~~~~~~ 82 (213)
T PF08840_consen 4 EYFEEAIDWLKSHPEVDPDKIGIIGISKGAELALLLASRFP-QISAVVAISPSSVVFQGIGFYRDSSKPLPYLPFDISKF 82 (213)
T ss_dssp HHHHHHHHHHHCSTTB--SSEEEEEETHHHHHHHHHHHHSS-SEEEEEEES--SB--SSEEEETTE--EE----B-GGG-
T ss_pred HHHHHHHHHHHhCCCCCCCCEEEEEECHHHHHHHHHHhcCC-CccEEEEeCCceeEecchhcccCCCccCCcCCcChhhc
Confidence 45679999999999999999999999999999999999996 79999999885221100 0000000 000
Q ss_pred chhhH------HHH------HhcCcccccCCCCCCEEEEEcCCCCCCCCChHHHHHHHHHHHhCCCc--EEEEEeCCCCC
Q 004475 652 LWEAT------NVY------IEMSPITHANKIKKPILIIHGEVDDKVGLFPMQAERFFDALKGHGAL--SRLVLLPFEHH 717 (751)
Q Consensus 652 ~~~~~------~~~------~~~~~~~~~~~~~~P~li~~G~~D~~vp~~~~~~~~~~~~l~~~~~~--~~~~~~~~~~H 717 (751)
.+... ..+ ......-.++++++|+|+++|++|...| ....+.++.++|++++.+ ++++.||++||
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~a~IpvE~i~~piLli~g~dD~~Wp-S~~~a~~i~~rL~~~~~~~~~~~l~Y~~aGH 161 (213)
T PF08840_consen 83 SWNEPGLLRSRYAFELADDKAVEEARIPVEKIKGPILLISGEDDQIWP-SSEMAEQIEERLKAAGFPHNVEHLSYPGAGH 161 (213)
T ss_dssp EE-TTS-EE-TT-B--TTTGGGCCCB--GGG--SEEEEEEETT-SSS--HHHHHHHHHHHHHCTT-----EEEEETTB-S
T ss_pred eecCCcceehhhhhhcccccccccccccHHHcCCCEEEEEeCCCCccc-hHHHHHHHHHHHHHhCCCCcceEEEcCCCCc
Confidence 00000 000 0011112366789999999999999998 244566777889888765 88899999999
Q ss_pred cCCccc---------------------------cHHHHHHHHHHHHHHHhc
Q 004475 718 VYAARE---------------------------NVMHVIWETDRWLQKYCL 741 (751)
Q Consensus 718 ~~~~~~---------------------------~~~~~~~~~~~fl~~~l~ 741 (751)
.+..+- ...+.++++++||+++|.
T Consensus 162 ~i~~Py~P~~~~~~~~~~~~~~~~GG~~~~~a~A~~dsW~~~l~Fl~~~L~ 212 (213)
T PF08840_consen 162 LIEPPYFPHCRASYHKFIGTPLAWGGEPEAHAKAQEDSWKKILEFLRKHLG 212 (213)
T ss_dssp ---STT-----EEEETTTTEEEE--B-HHHHHHHHHHHHHHHHHHHHHH--
T ss_pred eecCCCCCCcccccccccCCcccCCCChHHHHHHHHHHHHHHHHHHHHHhC
Confidence 763210 124568889999999986
No 97
>PRK03592 haloalkane dehalogenase; Provisional
Probab=99.51 E-value=7.8e-13 Score=134.96 Aligned_cols=199 Identities=13% Similarity=0.088 Sum_probs=124.4
Q ss_pred ccEEEEEcCCCCcCcccCCcccCCCCccCCCCchHHHHHHhCCeEEEEcCCCCCCCCCCCCCCc--hhHHHHHHHHHHHH
Q 004475 512 LPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGPSIPIIGEGDKLPND--RFVEQLVSSAEAAV 589 (751)
Q Consensus 512 ~P~vv~~HGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~v~~~~~~~~~g~g~~~~~~--~~~~~~~~d~~~~v 589 (751)
.|.||++||.+. ....|. .....|++++ .|++ ++.+|+|.+.... .......+|+...+
T Consensus 27 g~~vvllHG~~~--------------~~~~w~-~~~~~L~~~~-~via---~D~~G~G~S~~~~~~~~~~~~a~dl~~ll 87 (295)
T PRK03592 27 GDPIVFLHGNPT--------------SSYLWR-NIIPHLAGLG-RCLA---PDLIGMGASDKPDIDYTFADHARYLDAWF 87 (295)
T ss_pred CCEEEEECCCCC--------------CHHHHH-HHHHHHhhCC-EEEE---EcCCCCCCCCCCCCCCCHHHHHHHHHHHH
Confidence 368999999641 111111 3344666665 8888 5667888775432 23455566666666
Q ss_pred HHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEccCCCCCCC---Cc---------cCccc--c-------
Q 004475 590 EEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGSYNKTL---TP---------FGFQT--E------- 648 (751)
Q Consensus 590 ~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~~d~~~---~~---------~~~~~--~------- 648 (751)
+.+ ..+++.++||||||.+|+.++.++|++++++|++++...... .. +.... .
T Consensus 88 ~~l------~~~~~~lvGhS~Gg~ia~~~a~~~p~~v~~lil~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (295)
T PRK03592 88 DAL------GLDDVVLVGHDWGSALGFDWAARHPDRVRGIAFMEAIVRPMTWDDFPPAVRELFQALRSPGEGEEMVLEEN 161 (295)
T ss_pred HHh------CCCCeEEEEECHHHHHHHHHHHhChhheeEEEEECCCCCCcchhhcchhHHHHHHHHhCcccccccccchh
Confidence 554 236899999999999999999999999999999887422100 00 00000 0
Q ss_pred --cccchh-------hHH---HH-----------------HhcC--------------cccccCCCCCCEEEEEcCCCCC
Q 004475 649 --FRTLWE-------ATN---VY-----------------IEMS--------------PITHANKIKKPILIIHGEVDDK 685 (751)
Q Consensus 649 --~~~~~~-------~~~---~~-----------------~~~~--------------~~~~~~~~~~P~li~~G~~D~~ 685 (751)
....+. ..+ .+ .... ....+.++++|+|+++|++|..
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P~lii~G~~D~~ 241 (295)
T PRK03592 162 VFIERVLPGSILRPLSDEEMAVYRRPFPTPESRRPTLSWPRELPIDGEPADVVALVEEYAQWLATSDVPKLLINAEPGAI 241 (295)
T ss_pred hHHhhcccCcccccCCHHHHHHHHhhcCCchhhhhhhhhhhhcCCCCcchhhHhhhhHhHHHhccCCCCeEEEeccCCcc
Confidence 000000 000 00 0000 0012456799999999999999
Q ss_pred CCCChHHHHHHHHHHHhCCCcEEEEEeCCCCCcCCccccHHHHHHHHHHHHHHHhc
Q 004475 686 VGLFPMQAERFFDALKGHGALSRLVLLPFEHHVYAARENVMHVIWETDRWLQKYCL 741 (751)
Q Consensus 686 vp~~~~~~~~~~~~l~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~fl~~~l~ 741 (751)
++ +....++...+.. ..++++++++||... .+..+++.+.+.+|+.....
T Consensus 242 ~~--~~~~~~~~~~~~~---~~~~~~i~~~gH~~~-~e~p~~v~~~i~~fl~~~~~ 291 (295)
T PRK03592 242 LT--TGAIRDWCRSWPN---QLEITVFGAGLHFAQ-EDSPEEIGAAIAAWLRRLRL 291 (295)
T ss_pred cC--cHHHHHHHHHhhh---hcceeeccCcchhhh-hcCHHHHHHHHHHHHHHhcc
Confidence 95 4555455443322 357899999999987 56788999999999987643
No 98
>PLN02872 triacylglycerol lipase
Probab=99.51 E-value=6.5e-13 Score=137.72 Aligned_cols=245 Identities=16% Similarity=0.104 Sum_probs=149.6
Q ss_pred cCCceEEEEEEcCCCceEEEEEEcCCCCCCCCCCCccEEEEEcCCCCcCcccCCcccCCCCccCCC--CchHHHHHHhCC
Q 004475 477 ASLQKEMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGM--TPTSSLIFLARR 554 (751)
Q Consensus 477 ~~~~~e~i~~~~~~~~~i~~~~~~P~~~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~G 554 (751)
..++.|+..+.+.||..+....+.+.+... ...+.|+|+++||.+..+ ..|... ...++..|+++|
T Consensus 40 ~gy~~e~h~v~T~DGy~L~l~ri~~~~~~~-~~~~~~~Vll~HGl~~ss-----------~~w~~~~~~~sla~~La~~G 107 (395)
T PLN02872 40 AGYSCTEHTIQTKDGYLLALQRVSSRNPRL-GSQRGPPVLLQHGLFMAG-----------DAWFLNSPEQSLGFILADHG 107 (395)
T ss_pred cCCCceEEEEECCCCcEEEEEEcCCCCCCC-CCCCCCeEEEeCcccccc-----------cceeecCcccchHHHHHhCC
Confidence 357899999999999887777664332111 112358899999964211 222111 123455688999
Q ss_pred eEEEEcCCCCCCC-CCCC---CCC-----chhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCC-
Q 004475 555 FAVLAGPSIPIIG-EGDK---LPN-----DRFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPH- 624 (751)
Q Consensus 555 ~~v~~~~~~~~~g-~g~~---~~~-----~~~~~~~~~d~~~~v~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~p~- 624 (751)
|.|++++.++... +|.. ... ..+.+....|+.++++++.+.. ..++.++||||||.+++.++ ..|+
T Consensus 108 ydV~l~n~RG~~~s~gh~~~~~~~~~fw~~s~~e~a~~Dl~a~id~i~~~~---~~~v~~VGhS~Gg~~~~~~~-~~p~~ 183 (395)
T PLN02872 108 FDVWVGNVRGTRWSYGHVTLSEKDKEFWDWSWQELALYDLAEMIHYVYSIT---NSKIFIVGHSQGTIMSLAAL-TQPNV 183 (395)
T ss_pred CCcccccccccccccCCCCCCccchhccCCcHHHHHHHHHHHHHHHHHhcc---CCceEEEEECHHHHHHHHHh-hChHH
Confidence 9999965543211 1111 011 1222333479999999998653 36899999999999998544 5665
Q ss_pred --ceeEEEEccCCCCCCC--Cc----------------cC---c-cc------------ccc------------------
Q 004475 625 --LFCCGIARSGSYNKTL--TP----------------FG---F-QT------------EFR------------------ 650 (751)
Q Consensus 625 --~~~~~v~~~~~~d~~~--~~----------------~~---~-~~------------~~~------------------ 650 (751)
+++++++++|...... .+ ++ + +. ...
T Consensus 184 ~~~v~~~~~l~P~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~C~~~~~c~~~~~~~~g~~~~~n 263 (395)
T PLN02872 184 VEMVEAAALLCPISYLDHVTAPLVLRMVFMHLDQMVVAMGIHQLNFRSDVLVKLLDSICEGHMDCNDLLTSITGTNCCFN 263 (395)
T ss_pred HHHHHHHHHhcchhhhccCCCHHHHHHHHHhHHHHHHHhcCceecCCcHHHHHHHHHHccCchhHHHHHHHHhCCCcccc
Confidence 4666666666421000 00 00 0 00 000
Q ss_pred ----------cc----------h-----------------hhHHHHHhc-CcccccCCC--CCCEEEEEcCCCCCCCCCh
Q 004475 651 ----------TL----------W-----------------EATNVYIEM-SPITHANKI--KKPILIIHGEVDDKVGLFP 690 (751)
Q Consensus 651 ----------~~----------~-----------------~~~~~~~~~-~~~~~~~~~--~~P~li~~G~~D~~vp~~~ 690 (751)
.+ | .+...|... .|...+.++ ++|+++++|++|.+++ +
T Consensus 264 ~~~~~~~~~~~pagtS~k~~~H~~Q~~~s~~f~~yDyg~~~n~~~Yg~~~pP~Y~l~~i~~~~Pv~i~~G~~D~lv~--~ 341 (395)
T PLN02872 264 ASRIDYYLEYEPHPSSVKNLRHLFQMIRKGTFAHYDYGIFKNLKLYGQVNPPAFDLSLIPKSLPLWMGYGGTDGLAD--V 341 (395)
T ss_pred hhhhhHHHhcCCCcchHHHHHHHHHHHhcCCcccCCCCchhhHHHhCCCCCCCcCcccCCCCccEEEEEcCCCCCCC--H
Confidence 00 0 000111111 123346677 5799999999999998 8
Q ss_pred HHHHHHHHHHHhCCCcEEEEEeCCCCCc--CCccccHHHHHHHHHHHHHHHhcC
Q 004475 691 MQAERFFDALKGHGALSRLVLLPFEHHV--YAARENVMHVIWETDRWLQKYCLS 742 (751)
Q Consensus 691 ~~~~~~~~~l~~~~~~~~~~~~~~~~H~--~~~~~~~~~~~~~~~~fl~~~l~~ 742 (751)
..+..+.+.+.. ..+++.+++.+|. +...+..+.+++.+++||++++..
T Consensus 342 ~dv~~l~~~Lp~---~~~l~~l~~~gH~dfi~~~eape~V~~~Il~fL~~~~~~ 392 (395)
T PLN02872 342 TDVEHTLAELPS---KPELLYLENYGHIDFLLSTSAKEDVYNHMIQFFRSLGKS 392 (395)
T ss_pred HHHHHHHHHCCC---ccEEEEcCCCCCHHHHhCcchHHHHHHHHHHHHHHhhhc
Confidence 888888877753 2478889999996 444566788999999999987653
No 99
>COG2945 Predicted hydrolase of the alpha/beta superfamily [General function prediction only]
Probab=99.51 E-value=5.9e-13 Score=116.23 Aligned_cols=202 Identities=18% Similarity=0.240 Sum_probs=133.2
Q ss_pred eEEEEEEcCCCceEEEEEEcCCCCCCCCCCCccEEEEEcCCCCcCcccCCcccCCCCccCCCCchHHHHHHhCCeEEEEc
Q 004475 481 KEMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAG 560 (751)
Q Consensus 481 ~e~i~~~~~~~~~i~~~~~~P~~~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~v~~~ 560 (751)
+.++.++...| .+.+..- |.. ....|+.|.+|--+... | ..........+..|.++||+++.
T Consensus 4 ~~~v~i~Gp~G-~le~~~~-~~~-----~~~~~iAli~HPHPl~g--------G--tm~nkvv~~la~~l~~~G~atlR- 65 (210)
T COG2945 4 MPTVIINGPAG-RLEGRYE-PAK-----TPAAPIALICHPHPLFG--------G--TMNNKVVQTLARALVKRGFATLR- 65 (210)
T ss_pred CCcEEecCCcc-cceeccC-CCC-----CCCCceEEecCCCcccc--------C--ccCCHHHHHHHHHHHhCCceEEe-
Confidence 34455554333 3444443 333 22478999999865321 1 11111223456678899999999
Q ss_pred CCCCCCCCCCCCCCchhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEccCCCCCCC
Q 004475 561 PSIPIIGEGDKLPNDRFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGSYNKTL 640 (751)
Q Consensus 561 ~~~~~~g~g~~~~~~~~~~~~~~d~~~~v~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~~d~~~ 640 (751)
++++|-|++.+.....-.+.+|+..+++|++++.. +..-..+.|+|+|+++++.+|.+.|+ ....++..|..+.
T Consensus 66 --fNfRgVG~S~G~fD~GiGE~~Da~aaldW~~~~hp-~s~~~~l~GfSFGa~Ia~~la~r~~e-~~~~is~~p~~~~-- 139 (210)
T COG2945 66 --FNFRGVGRSQGEFDNGIGELEDAAAALDWLQARHP-DSASCWLAGFSFGAYIAMQLAMRRPE-ILVFISILPPINA-- 139 (210)
T ss_pred --ecccccccccCcccCCcchHHHHHHHHHHHHhhCC-CchhhhhcccchHHHHHHHHHHhccc-ccceeeccCCCCc--
Confidence 55566666655444455678999999999999853 22234789999999999999999865 3555566665441
Q ss_pred CccCcccccccchhhHHHHHhcCcccccCCCCCCEEEEEcCCCCCCCCChHHHHHHHHHHHhCCCcEEEEEeCCCCCcCC
Q 004475 641 TPFGFQTEFRTLWEATNVYIEMSPITHANKIKKPILIIHGEVDDKVGLFPMQAERFFDALKGHGALSRLVLLPFEHHVYA 720 (751)
Q Consensus 641 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~li~~G~~D~~vp~~~~~~~~~~~~l~~~~~~~~~~~~~~~~H~~~ 720 (751)
+ ....+....+|.++++|+.|.++. .....+..+ +.+.+++++++++|.|.
T Consensus 140 --~--------------------dfs~l~P~P~~~lvi~g~~Ddvv~--l~~~l~~~~-----~~~~~~i~i~~a~HFF~ 190 (210)
T COG2945 140 --Y--------------------DFSFLAPCPSPGLVIQGDADDVVD--LVAVLKWQE-----SIKITVITIPGADHFFH 190 (210)
T ss_pred --h--------------------hhhhccCCCCCceeEecChhhhhc--HHHHHHhhc-----CCCCceEEecCCCceec
Confidence 0 001233456899999999999987 555444432 25678999999999984
Q ss_pred ccccHHHHHHHHHHHHH
Q 004475 721 ARENVMHVIWETDRWLQ 737 (751)
Q Consensus 721 ~~~~~~~~~~~~~~fl~ 737 (751)
.+.....+.+.+|+.
T Consensus 191 --gKl~~l~~~i~~~l~ 205 (210)
T COG2945 191 --GKLIELRDTIADFLE 205 (210)
T ss_pred --ccHHHHHHHHHHHhh
Confidence 456677778888885
No 100
>PRK11071 esterase YqiA; Provisional
Probab=99.51 E-value=1.1e-12 Score=122.59 Aligned_cols=177 Identities=11% Similarity=0.041 Sum_probs=105.6
Q ss_pred cEEEEEcCCCCcCcccCCcccCCCCccCCCCchHHHHHHh--CCeEEEEcCCCCCCCCCCCCCCchhHHHHHHHHHHHHH
Q 004475 513 PCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLA--RRFAVLAGPSIPIIGEGDKLPNDRFVEQLVSSAEAAVE 590 (751)
Q Consensus 513 P~vv~~HGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~G~~v~~~~~~~~~g~g~~~~~~~~~~~~~~d~~~~v~ 590 (751)
|.||++||-+ +++..+.. ......+.+ .+|.|++ .+.+|++ . ++.+.++
T Consensus 2 p~illlHGf~-----------ss~~~~~~--~~~~~~l~~~~~~~~v~~---~dl~g~~---------~----~~~~~l~ 52 (190)
T PRK11071 2 STLLYLHGFN-----------SSPRSAKA--TLLKNWLAQHHPDIEMIV---PQLPPYP---------A----DAAELLE 52 (190)
T ss_pred CeEEEECCCC-----------CCcchHHH--HHHHHHHHHhCCCCeEEe---CCCCCCH---------H----HHHHHHH
Confidence 6799999953 22222211 012233444 3799998 4444542 2 2333444
Q ss_pred HHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEccCCCCCCCCc-------cCcccccccch--hhHHHHHh
Q 004475 591 EVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGSYNKTLTP-------FGFQTEFRTLW--EATNVYIE 661 (751)
Q Consensus 591 ~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~~d~~~~~-------~~~~~~~~~~~--~~~~~~~~ 661 (751)
.+.++. +.+++.++|+||||.+|+.++.++|. + +|+++|..+..... ..........+ ...+....
T Consensus 53 ~l~~~~--~~~~~~lvG~S~Gg~~a~~~a~~~~~--~-~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ 127 (190)
T PRK11071 53 SLVLEH--GGDPLGLVGSSLGGYYATWLSQCFML--P-AVVVNPAVRPFELLTDYLGENENPYTGQQYVLESRHIYDLKV 127 (190)
T ss_pred HHHHHc--CCCCeEEEEECHHHHHHHHHHHHcCC--C-EEEECCCCCHHHHHHHhcCCcccccCCCcEEEcHHHHHHHHh
Confidence 443332 23589999999999999999999983 3 46677765521000 00000000111 11111222
Q ss_pred cCcccccCCCCCCEEEEEcCCCCCCCCChHHHHHHHHHHHhCCCcEEEEEeCCCCCcCCccccHHHHHHHHHHHHH
Q 004475 662 MSPITHANKIKKPILIIHGEVDDKVGLFPMQAERFFDALKGHGALSRLVLLPFEHHVYAARENVMHVIWETDRWLQ 737 (751)
Q Consensus 662 ~~~~~~~~~~~~P~li~~G~~D~~vp~~~~~~~~~~~~l~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~fl~ 737 (751)
..+.. +. ..+|++++||++|.+|| +..+.++++. +.+++++|++|.+.. .+++.+.+.+||.
T Consensus 128 ~~~~~-i~-~~~~v~iihg~~De~V~--~~~a~~~~~~-------~~~~~~~ggdH~f~~---~~~~~~~i~~fl~ 189 (190)
T PRK11071 128 MQIDP-LE-SPDLIWLLQQTGDEVLD--YRQAVAYYAA-------CRQTVEEGGNHAFVG---FERYFNQIVDFLG 189 (190)
T ss_pred cCCcc-CC-ChhhEEEEEeCCCCcCC--HHHHHHHHHh-------cceEEECCCCcchhh---HHHhHHHHHHHhc
Confidence 22222 33 56889999999999999 9999999873 246678999999854 3678888999874
No 101
>TIGR01250 pro_imino_pep_2 proline-specific peptidases, Bacillus coagulans-type subfamily. This model describes a subfamily of the alpha/beta fold family of hydrolases. Characterized members include prolinases (Pro-Xaa dipeptidase, EC 3.4.13.8), prolyl aminopeptidases (EC 3.4.11.5), and a leucyl aminopeptidase
Probab=99.50 E-value=7.5e-13 Score=134.83 Aligned_cols=195 Identities=16% Similarity=0.130 Sum_probs=115.9
Q ss_pred ccEEEEEcCCCCcCcccCCcccCCCCccCCCCchHHHHHHhCCeEEEEcCCCCCCCCCCCCCCc-----hhHHHHHHHHH
Q 004475 512 LPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGPSIPIIGEGDKLPND-----RFVEQLVSSAE 586 (751)
Q Consensus 512 ~P~vv~~HGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~v~~~~~~~~~g~g~~~~~~-----~~~~~~~~d~~ 586 (751)
.|.||++||++.. ...+.......+...||.|++ .+.+|+|.+.... .......+|+.
T Consensus 25 ~~~vl~~hG~~g~--------------~~~~~~~~~~~l~~~g~~vi~---~d~~G~G~s~~~~~~~~~~~~~~~~~~~~ 87 (288)
T TIGR01250 25 KIKLLLLHGGPGM--------------SHEYLENLRELLKEEGREVIM---YDQLGCGYSDQPDDSDELWTIDYFVDELE 87 (288)
T ss_pred CCeEEEEcCCCCc--------------cHHHHHHHHHHHHhcCCEEEE---EcCCCCCCCCCCCcccccccHHHHHHHHH
Confidence 4789999996311 011111222233445999999 5566777664321 12334444444
Q ss_pred HHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEccCCCCCCCCc-------cCcccc---------cc
Q 004475 587 AAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGSYNKTLTP-------FGFQTE---------FR 650 (751)
Q Consensus 587 ~~v~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~~d~~~~~-------~~~~~~---------~~ 650 (751)
..++.+ +..++.++||||||.+++.++..+|++++++|+.++........ ...... ..
T Consensus 88 ~~~~~~------~~~~~~liG~S~Gg~ia~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (288)
T TIGR01250 88 EVREKL------GLDKFYLLGHSWGGMLAQEYALKYGQHLKGLIISSMLDSAPEYVKELNRLRKELPPEVRAAIKRCEAS 161 (288)
T ss_pred HHHHHc------CCCcEEEEEeehHHHHHHHHHHhCccccceeeEecccccchHHHHHHHHHHhhcChhHHHHHHHHHhc
Confidence 443322 33579999999999999999999999999999887653211000 000000 00
Q ss_pred cchhh------HHHHH------------------------------------------hcCcccccCCCCCCEEEEEcCC
Q 004475 651 TLWEA------TNVYI------------------------------------------EMSPITHANKIKKPILIIHGEV 682 (751)
Q Consensus 651 ~~~~~------~~~~~------------------------------------------~~~~~~~~~~~~~P~li~~G~~ 682 (751)
..+.. ...+. .......+.++++|+|+++|++
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P~lii~G~~ 241 (288)
T TIGR01250 162 GDYDNPEYQEAVEVFYHHLLCRTRKWPEALKHLKSGMNTNVYNIMQGPNEFTITGNLKDWDITDKLSEIKVPTLLTVGEF 241 (288)
T ss_pred cCcchHHHHHHHHHHHHHhhcccccchHHHHHHhhccCHHHHhcccCCccccccccccccCHHHHhhccCCCEEEEecCC
Confidence 00000 00000 0011123456889999999999
Q ss_pred CCCCCCChHHHHHHHHHHHhCCCcEEEEEeCCCCCcCCccccHHHHHHHHHHHHH
Q 004475 683 DDKVGLFPMQAERFFDALKGHGALSRLVLLPFEHHVYAARENVMHVIWETDRWLQ 737 (751)
Q Consensus 683 D~~vp~~~~~~~~~~~~l~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~fl~ 737 (751)
|.. + +.....+.+.+. .++++++++++|... .+...++.+.+.+||+
T Consensus 242 D~~-~--~~~~~~~~~~~~----~~~~~~~~~~gH~~~-~e~p~~~~~~i~~fl~ 288 (288)
T TIGR01250 242 DTM-T--PEAAREMQELIA----GSRLVVFPDGSHMTM-IEDPEVYFKLLSDFIR 288 (288)
T ss_pred Ccc-C--HHHHHHHHHhcc----CCeEEEeCCCCCCcc-cCCHHHHHHHHHHHhC
Confidence 984 5 566665555443 457899999999876 4677888888888873
No 102
>PLN02894 hydrolase, alpha/beta fold family protein
Probab=99.50 E-value=2.5e-12 Score=135.59 Aligned_cols=204 Identities=17% Similarity=0.102 Sum_probs=122.4
Q ss_pred ccEEEEEcCCCCcCcccCCcccCCCCccCCCCchHHHHHHhCCeEEEEcCCCCCCCCCCCCCCch---hHHHHHHHHHHH
Q 004475 512 LPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGPSIPIIGEGDKLPNDR---FVEQLVSSAEAA 588 (751)
Q Consensus 512 ~P~vv~~HGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~v~~~~~~~~~g~g~~~~~~~---~~~~~~~d~~~~ 588 (751)
.|+||++||.+... ..+ ......|+ ++|.|++ ++.+|+|.+..... ......+.+.+.
T Consensus 105 ~p~vvllHG~~~~~-----------~~~----~~~~~~L~-~~~~vi~---~D~rG~G~S~~~~~~~~~~~~~~~~~~~~ 165 (402)
T PLN02894 105 APTLVMVHGYGASQ-----------GFF----FRNFDALA-SRFRVIA---IDQLGWGGSSRPDFTCKSTEETEAWFIDS 165 (402)
T ss_pred CCEEEEECCCCcch-----------hHH----HHHHHHHH-hCCEEEE---ECCCCCCCCCCCCcccccHHHHHHHHHHH
Confidence 58999999964210 111 12233444 4699999 66677777643321 111222222222
Q ss_pred -HHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEccCCCCCCCC-c-----------c-----------C
Q 004475 589 -VEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGSYNKTLT-P-----------F-----------G 644 (751)
Q Consensus 589 -v~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~~d~~~~-~-----------~-----------~ 644 (751)
.+++... +..+++++||||||++|+.++.++|++++++|+.+|..-.... . + .
T Consensus 166 i~~~~~~l---~~~~~~lvGhS~GG~la~~~a~~~p~~v~~lvl~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (402)
T PLN02894 166 FEEWRKAK---NLSNFILLGHSFGGYVAAKYALKHPEHVQHLILVGPAGFSSESDDKSEWLTKFRATWKGAVLNHLWESN 242 (402)
T ss_pred HHHHHHHc---CCCCeEEEEECHHHHHHHHHHHhCchhhcEEEEECCccccCCcchhHHHHhhcchhHHHHHHHHHhhcC
Confidence 2444333 3468999999999999999999999999999988764211000 0 0 0
Q ss_pred c-c---------------ccc----------c--cchhhHHHH---------------------------HhcCcccccC
Q 004475 645 F-Q---------------TEF----------R--TLWEATNVY---------------------------IEMSPITHAN 669 (751)
Q Consensus 645 ~-~---------------~~~----------~--~~~~~~~~~---------------------------~~~~~~~~~~ 669 (751)
+ + ... . ......+.+ ........+.
T Consensus 243 ~~p~~~~~~~gp~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 322 (402)
T PLN02894 243 FTPQKIIRGLGPWGPNLVRRYTTARFGAHSTGDILSEEESKLLTDYVYHTLAAKASGELCLKYIFSFGAFARKPLLESAS 322 (402)
T ss_pred CCHHHHHHhccchhHHHHHHHHHHHhhhcccccccCcchhhHHHHHHHHhhcCCCchHHHHHHhccCchhhcchHhhhcc
Confidence 0 0 000 0 000000000 0011112356
Q ss_pred CCCCCEEEEEcCCCCCCCCChHHHHHHHHHHHhCCCcEEEEEeCCCCCcCCccccHHHHHHHHHHHHHHHhcCCC
Q 004475 670 KIKKPILIIHGEVDDKVGLFPMQAERFFDALKGHGALSRLVLLPFEHHVYAARENVMHVIWETDRWLQKYCLSNT 744 (751)
Q Consensus 670 ~~~~P~li~~G~~D~~vp~~~~~~~~~~~~l~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~fl~~~l~~~~ 744 (751)
++++|+++++|++|.+++ ....++.+.+ +..+++++++++||... .+....+.+.+.+|++..+....
T Consensus 323 ~I~vP~liI~G~~D~i~~---~~~~~~~~~~---~~~~~~~~i~~aGH~~~-~E~P~~f~~~l~~~~~~~~~~~~ 390 (402)
T PLN02894 323 EWKVPTTFIYGRHDWMNY---EGAVEARKRM---KVPCEIIRVPQGGHFVF-LDNPSGFHSAVLYACRKYLSPDR 390 (402)
T ss_pred cCCCCEEEEEeCCCCCCc---HHHHHHHHHc---CCCCcEEEeCCCCCeee-ccCHHHHHHHHHHHHHHhccCCc
Confidence 789999999999998754 4444444333 34578999999999865 67788999999999999887543
No 103
>TIGR01836 PHA_synth_III_C poly(R)-hydroxyalkanoic acid synthase, class III, PhaC subunit. This model represents the PhaC subunit of a heterodimeric form of polyhydroxyalkanoic acid (PHA) synthase. Excepting the PhaC of Bacillus megaterium (which needs PhaR), all members require PhaE (TIGR01834) for activity and are designated class III. This enzyme builds ester polymers for carbon and energy storage that accumulate in inclusions, and both this enzyme and the depolymerase associate with the inclusions. Class III enzymes polymerize short-chain-length hydroxyalkanoates.
Probab=99.50 E-value=1.5e-12 Score=135.64 Aligned_cols=184 Identities=16% Similarity=0.063 Sum_probs=121.0
Q ss_pred hHHHHHHhCCeEEEEcCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCC
Q 004475 545 TSSLIFLARRFAVLAGPSIPIIGEGDKLPNDRFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPH 624 (751)
Q Consensus 545 ~~~~~~~~~G~~v~~~~~~~~~g~g~~~~~~~~~~~~~~d~~~~v~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~p~ 624 (751)
.++..|+++||.|+++| ..|.|.+........-...++.+++++++++.. ..+|.++||||||.+++.+++.+|+
T Consensus 85 ~~~~~L~~~G~~V~~~D---~~g~g~s~~~~~~~d~~~~~~~~~v~~l~~~~~--~~~i~lvGhS~GG~i~~~~~~~~~~ 159 (350)
T TIGR01836 85 SLVRGLLERGQDVYLID---WGYPDRADRYLTLDDYINGYIDKCVDYICRTSK--LDQISLLGICQGGTFSLCYAALYPD 159 (350)
T ss_pred hHHHHHHHCCCeEEEEe---CCCCCHHHhcCCHHHHHHHHHHHHHHHHHHHhC--CCcccEEEECHHHHHHHHHHHhCch
Confidence 56778899999999954 445554433322322233558889999987643 4689999999999999999999999
Q ss_pred ceeEEEEccCCCCCCCCccC-------------------ccc-----------ccccch----------hhHH---HH--
Q 004475 625 LFCCGIARSGSYNKTLTPFG-------------------FQT-----------EFRTLW----------EATN---VY-- 659 (751)
Q Consensus 625 ~~~~~v~~~~~~d~~~~~~~-------------------~~~-----------~~~~~~----------~~~~---~~-- 659 (751)
+++++|++++..+....... .+. .....| .+.+ .+
T Consensus 160 ~v~~lv~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~f~~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (350)
T TIGR01836 160 KIKNLVTMVTPVDFETPGNMLSNWARHVDIDLAVDTMGNIPGELLNLTFLMLKPFSLGYQKYVNLVDILEDERKVENFLR 239 (350)
T ss_pred heeeEEEeccccccCCCCchhhhhccccCHHHHHHhcCCCCHHHHHHHHHhcCcchhhhHHHHHHHHhcCChHHHHHHHH
Confidence 99999999987763211100 000 000000 0000 00
Q ss_pred ------------------------HhcCc----------ccccCCCCCCEEEEEcCCCCCCCCChHHHHHHHHHHHhCCC
Q 004475 660 ------------------------IEMSP----------ITHANKIKKPILIIHGEVDDKVGLFPMQAERFFDALKGHGA 705 (751)
Q Consensus 660 ------------------------~~~~~----------~~~~~~~~~P~li~~G~~D~~vp~~~~~~~~~~~~l~~~~~ 705 (751)
..... ...+.++++|+|+++|++|.++| +..+..+++.+.. .
T Consensus 240 ~~~w~~d~~~~~~~~~~~~~~~~~~~n~l~~g~~~~~~~~~~l~~i~~Pvliv~G~~D~i~~--~~~~~~~~~~~~~--~ 315 (350)
T TIGR01836 240 MEKWIFDSPDQAGEAFRQFVKDFYQQNGLINGEVEIGGRKVDLKNIKMPILNIYAERDHLVP--PDASKALNDLVSS--E 315 (350)
T ss_pred HHHHhcCCcCccHHHHHHHHHHHHhcCcccCCeeEECCEEccHHhCCCCeEEEecCCCCcCC--HHHHHHHHHHcCC--C
Confidence 00000 01245678999999999999998 8888888887654 4
Q ss_pred cEEEEEeCCCCCcC-Cccc-cHHHHHHHHHHHHHH
Q 004475 706 LSRLVLLPFEHHVY-AARE-NVMHVIWETDRWLQK 738 (751)
Q Consensus 706 ~~~~~~~~~~~H~~-~~~~-~~~~~~~~~~~fl~~ 738 (751)
+++++++++ +|.. .... ...+++..+.+||.+
T Consensus 316 ~~~~~~~~~-gH~~~~~~~~~~~~v~~~i~~wl~~ 349 (350)
T TIGR01836 316 DYTELSFPG-GHIGIYVSGKAQKEVPPAIGKWLQA 349 (350)
T ss_pred CeEEEEcCC-CCEEEEECchhHhhhhHHHHHHHHh
Confidence 578888885 5653 3222 357889999999975
No 104
>COG0429 Predicted hydrolase of the alpha/beta-hydrolase fold [General function prediction only]
Probab=99.50 E-value=7.9e-13 Score=126.61 Aligned_cols=229 Identities=18% Similarity=0.169 Sum_probs=140.4
Q ss_pred EEEcCCCceEEEEEEcCCCCCCCCCCCccEEEEEcCCCCcCcccCCcccCCCCccCCCCchHHHHHHhCCeEEEEcCCCC
Q 004475 485 KYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGPSIP 564 (751)
Q Consensus 485 ~~~~~~~~~i~~~~~~P~~~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~v~~~~~~~ 564 (751)
.+...+|..+...+..++. ....|.||++||- .|+.. ..+...+...+.++||.|++ +.
T Consensus 53 ~v~~pdg~~~~ldw~~~p~-----~~~~P~vVl~HGL-----------~G~s~--s~y~r~L~~~~~~rg~~~Vv---~~ 111 (345)
T COG0429 53 RLETPDGGFIDLDWSEDPR-----AAKKPLVVLFHGL-----------EGSSN--SPYARGLMRALSRRGWLVVV---FH 111 (345)
T ss_pred EEEcCCCCEEEEeeccCcc-----ccCCceEEEEecc-----------CCCCc--CHHHHHHHHHHHhcCCeEEE---Ee
Confidence 3334455555555554322 1236999999993 33222 22333456677889999999 55
Q ss_pred CCCCCCCCC--CchhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHH-HHHHHHHhCCC-ceeEEEEccCCCCCCC
Q 004475 565 IIGEGDKLP--NDRFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAF-MTAHLLAHAPH-LFCCGIARSGSYNKTL 640 (751)
Q Consensus 565 ~~g~g~~~~--~~~~~~~~~~d~~~~v~~l~~~~~id~~~i~l~G~S~GG~-~a~~~a~~~p~-~~~~~v~~~~~~d~~~ 640 (751)
.+|++.+.. +.-+.....+|+..++++++++.. +.++.++|.|+||. +|.+++-...+ .+.++++.+..+|...
T Consensus 112 ~Rgcs~~~n~~p~~yh~G~t~D~~~~l~~l~~~~~--~r~~~avG~SLGgnmLa~ylgeeg~d~~~~aa~~vs~P~Dl~~ 189 (345)
T COG0429 112 FRGCSGEANTSPRLYHSGETEDIRFFLDWLKARFP--PRPLYAVGFSLGGNMLANYLGEEGDDLPLDAAVAVSAPFDLEA 189 (345)
T ss_pred cccccCCcccCcceecccchhHHHHHHHHHHHhCC--CCceEEEEecccHHHHHHHHHhhccCcccceeeeeeCHHHHHH
Confidence 566665532 333445567999999999998643 57899999999995 55444433311 3456665555433110
Q ss_pred C------ccC----------------------c----ccc-------cccch--------------hhHHHHHhcCcccc
Q 004475 641 T------PFG----------------------F----QTE-------FRTLW--------------EATNVYIEMSPITH 667 (751)
Q Consensus 641 ~------~~~----------------------~----~~~-------~~~~~--------------~~~~~~~~~~~~~~ 667 (751)
. .+. + +.. ....| ...+.|...|.+..
T Consensus 190 ~~~~l~~~~s~~ly~r~l~~~L~~~~~~kl~~l~~~~p~~~~~~ik~~~ti~eFD~~~Tap~~Gf~da~dYYr~aSs~~~ 269 (345)
T COG0429 190 CAYRLDSGFSLRLYSRYLLRNLKRNAARKLKELEPSLPGTVLAAIKRCRTIREFDDLLTAPLHGFADAEDYYRQASSLPL 269 (345)
T ss_pred HHHHhcCchhhhhhHHHHHHHHHHHHHHHHHhcCcccCcHHHHHHHhhchHHhccceeeecccCCCcHHHHHHhcccccc
Confidence 0 000 0 000 01111 11356777788899
Q ss_pred cCCCCCCEEEEEcCCCCCCCCChHHHHHHHHHHHhCCCcEEEEEeCCCCCcCCcccc--H--HHHHHHHHHHHHHHhc
Q 004475 668 ANKIKKPILIIHGEVDDKVGLFPMQAERFFDALKGHGALSRLVLLPFEHHVYAAREN--V--MHVIWETDRWLQKYCL 741 (751)
Q Consensus 668 ~~~~~~P~li~~G~~D~~vp~~~~~~~~~~~~l~~~~~~~~~~~~~~~~H~~~~~~~--~--~~~~~~~~~fl~~~l~ 741 (751)
+.+|.+|+||||..+|++++ ....-..... .+..+.+.+-+.+||.-..... . .-..+++.+||+..+.
T Consensus 270 L~~Ir~PtLii~A~DDP~~~--~~~iP~~~~~---~np~v~l~~t~~GGHvGfl~~~~~~~~~W~~~ri~~~l~~~~~ 342 (345)
T COG0429 270 LPKIRKPTLIINAKDDPFMP--PEVIPKLQEM---LNPNVLLQLTEHGGHVGFLGGKLLHPQMWLEQRILDWLDPFLE 342 (345)
T ss_pred ccccccceEEEecCCCCCCC--hhhCCcchhc---CCCceEEEeecCCceEEeccCccccchhhHHHHHHHHHHHHHh
Confidence 99999999999999999997 4332222111 4567899999999997432211 1 1345678999988764
No 105
>TIGR01738 bioH putative pimeloyl-BioC--CoA transferase BioH. This CoA-binding enzyme is required for the production of pimeloyl-coenzyme A, the substrate of the BioF protein early in the biosynthesis of biotin. Its exact function is unknown, but is proposed in ref 2. This enzyme belongs to the alpha/beta hydrolase fold family (pfam model pfam00561). Members of this family are restricted to the Proteobacteria.
Probab=99.50 E-value=5.2e-13 Score=132.33 Aligned_cols=190 Identities=14% Similarity=0.107 Sum_probs=116.2
Q ss_pred ccEEEEEcCCCCcCcccCCcccCCCCccCCCCchHHHHHHhCCeEEEEcCCCCCCCCCCCCCCchhHHHHHHHHHHHHHH
Q 004475 512 LPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGPSIPIIGEGDKLPNDRFVEQLVSSAEAAVEE 591 (751)
Q Consensus 512 ~P~vv~~HGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~v~~~~~~~~~g~g~~~~~~~~~~~~~~d~~~~v~~ 591 (751)
.|.||++||.+. . ...| ...... +..+|.|++ ++.+|+|.+...... ++.+.++.
T Consensus 4 ~~~iv~~HG~~~-----------~---~~~~-~~~~~~-l~~~~~vi~---~d~~G~G~s~~~~~~------~~~~~~~~ 58 (245)
T TIGR01738 4 NVHLVLIHGWGM-----------N---AEVF-RCLDEE-LSAHFTLHL---VDLPGHGRSRGFGPL------SLADAAEA 58 (245)
T ss_pred CceEEEEcCCCC-----------c---hhhH-HHHHHh-hccCeEEEE---ecCCcCccCCCCCCc------CHHHHHHH
Confidence 378999999531 1 1111 122333 346799999 566677776432211 12233333
Q ss_pred HHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEccCCCCCCCC-cc--Ccc------------cccc---cch
Q 004475 592 VVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGSYNKTLT-PF--GFQ------------TEFR---TLW 653 (751)
Q Consensus 592 l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~~d~~~~-~~--~~~------------~~~~---~~~ 653 (751)
+.+.. ..++.++||||||.+++.++.++|++++++|++++....... .+ ... .... ..+
T Consensus 59 ~~~~~---~~~~~lvG~S~Gg~~a~~~a~~~p~~v~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (245)
T TIGR01738 59 IAAQA---PDPAIWLGWSLGGLVALHIAATHPDRVRALVTVASSPCFSAREDWPEGIKPDVLTGFQQQLSDDYQRTIERF 135 (245)
T ss_pred HHHhC---CCCeEEEEEcHHHHHHHHHHHHCHHhhheeeEecCCcccccCCcccccCCHHHHHHHHHHhhhhHHHHHHHH
Confidence 33321 258999999999999999999999999999987664221000 00 000 0000 000
Q ss_pred ----------hh--H---------------H-------HHHhcCcccccCCCCCCEEEEEcCCCCCCCCChHHHHHHHHH
Q 004475 654 ----------EA--T---------------N-------VYIEMSPITHANKIKKPILIIHGEVDDKVGLFPMQAERFFDA 699 (751)
Q Consensus 654 ----------~~--~---------------~-------~~~~~~~~~~~~~~~~P~li~~G~~D~~vp~~~~~~~~~~~~ 699 (751)
.. . . .+........+.++++|+|+++|++|..+| ....+.+.+.
T Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~Pvlii~g~~D~~~~--~~~~~~~~~~ 213 (245)
T TIGR01738 136 LALQTLGTPTARQDARALKQTLLARPTPNVQVLQAGLEILATVDLRQPLQNISVPFLRLYGYLDGLVP--AKVVPYLDKL 213 (245)
T ss_pred HHHHHhcCCccchHHHHHHHHhhccCCCCHHHHHHHHHHhhcccHHHHHhcCCCCEEEEeecCCcccC--HHHHHHHHHh
Confidence 00 0 0 000011112356889999999999999998 7777766655
Q ss_pred HHhCCCcEEEEEeCCCCCcCCccccHHHHHHHHHHHH
Q 004475 700 LKGHGALSRLVLLPFEHHVYAARENVMHVIWETDRWL 736 (751)
Q Consensus 700 l~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~fl 736 (751)
++ .++++++++++|... .+....+.+.+.+|+
T Consensus 214 ~~----~~~~~~~~~~gH~~~-~e~p~~~~~~i~~fi 245 (245)
T TIGR01738 214 AP----HSELYIFAKAAHAPF-LSHAEAFCALLVAFK 245 (245)
T ss_pred CC----CCeEEEeCCCCCCcc-ccCHHHHHHHHHhhC
Confidence 43 468999999999976 567888888888884
No 106
>TIGR01249 pro_imino_pep_1 proline iminopeptidase, Neisseria-type subfamily. This model represents one of two related families of proline iminopeptidase in the alpha/beta fold hydrolase family. The fine specificities of the various members, including both the range of short peptides from which proline can be removed and whether other amino acids such as alanine can be also removed, may vary among members.
Probab=99.48 E-value=1.2e-12 Score=133.81 Aligned_cols=172 Identities=19% Similarity=0.223 Sum_probs=104.5
Q ss_pred HHHhCCeEEEEcCCCCCCCCCCCCCCch----hHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCC
Q 004475 549 IFLARRFAVLAGPSIPIIGEGDKLPNDR----FVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPH 624 (751)
Q Consensus 549 ~~~~~G~~v~~~~~~~~~g~g~~~~~~~----~~~~~~~d~~~~v~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~p~ 624 (751)
.+...+|.|++ ++.+|+|.+..... ...+..+|+...++.+ +..++.++||||||.+++.++.++|+
T Consensus 48 ~~~~~~~~vi~---~D~~G~G~S~~~~~~~~~~~~~~~~dl~~l~~~l------~~~~~~lvG~S~GG~ia~~~a~~~p~ 118 (306)
T TIGR01249 48 FFDPETYRIVL---FDQRGCGKSTPHACLEENTTWDLVADIEKLREKL------GIKNWLVFGGSWGSTLALAYAQTHPE 118 (306)
T ss_pred ccCccCCEEEE---ECCCCCCCCCCCCCcccCCHHHHHHHHHHHHHHc------CCCCEEEEEECHHHHHHHHHHHHChH
Confidence 34457899999 66678887654321 1233444444433332 23579999999999999999999999
Q ss_pred ceeEEEEccCCCCCC-------------CCc-----c--Ccccccc------------------------cch---hh--
Q 004475 625 LFCCGIARSGSYNKT-------------LTP-----F--GFQTEFR------------------------TLW---EA-- 655 (751)
Q Consensus 625 ~~~~~v~~~~~~d~~-------------~~~-----~--~~~~~~~------------------------~~~---~~-- 655 (751)
+++++|+.++..... ..+ + ....... ..| ..
T Consensus 119 ~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (306)
T TIGR01249 119 VVTGLVLRGIFLLREKEWSWFYEGGASMIYPDAWQRFMDSIPENERNEQLVNAYHDRLQSGDEETKLAAAKAWVDWESTT 198 (306)
T ss_pred hhhhheeeccccCCHHHHHHHHhcchhhhCHHHHHHHhhhCChhhhhccHHHHHHHHccCCCHHHHHHHHHHHHHHhChh
Confidence 999888876543210 000 0 0000000 000 00
Q ss_pred --------------H---HHHHh-----------cC----cccccCCC-CCCEEEEEcCCCCCCCCChHHHHHHHHHHHh
Q 004475 656 --------------T---NVYIE-----------MS----PITHANKI-KKPILIIHGEVDDKVGLFPMQAERFFDALKG 702 (751)
Q Consensus 656 --------------~---~~~~~-----------~~----~~~~~~~~-~~P~li~~G~~D~~vp~~~~~~~~~~~~l~~ 702 (751)
+ ..+.. .. ....+.++ ++|+|++||+.|.++| ...+.++++.+.
T Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~P~lii~g~~D~~~p--~~~~~~~~~~~~- 275 (306)
T TIGR01249 199 LLRPINEIVSTAEDFKFSLAFARLENHYFVNKGFLDVENFILDNISKIRNIPTYIVHGRYDLCCP--LQSAWALHKAFP- 275 (306)
T ss_pred hcCCCCCccccccchHHHHHHHHHHHhHHHHhchhcCchHHHHhhhhccCCCeEEEecCCCCCCC--HHHHHHHHHhCC-
Confidence 0 00000 00 01233456 5899999999999998 888888877654
Q ss_pred CCCcEEEEEeCCCCCcCCccccHHHHHHHHHHHHHHH
Q 004475 703 HGALSRLVLLPFEHHVYAARENVMHVIWETDRWLQKY 739 (751)
Q Consensus 703 ~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~fl~~~ 739 (751)
..+++++++++|..... ...+.+.+|+...
T Consensus 276 ---~~~~~~~~~~gH~~~~~----~~~~~i~~~~~~~ 305 (306)
T TIGR01249 276 ---EAELKVTNNAGHSAFDP----NNLAALVHALETY 305 (306)
T ss_pred ---CCEEEEECCCCCCCCCh----HHHHHHHHHHHHh
Confidence 35799999999997532 3456667776654
No 107
>PRK10349 carboxylesterase BioH; Provisional
Probab=99.48 E-value=7.2e-13 Score=132.19 Aligned_cols=190 Identities=11% Similarity=0.034 Sum_probs=115.2
Q ss_pred cEEEEEcCCCCcCcccCCcccCCCCccCCCCchHHHHHHhCCeEEEEcCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHH
Q 004475 513 PCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGPSIPIIGEGDKLPNDRFVEQLVSSAEAAVEEV 592 (751)
Q Consensus 513 P~vv~~HGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~v~~~~~~~~~g~g~~~~~~~~~~~~~~d~~~~v~~l 592 (751)
|.||++||.|.. ...|. .....| ...|.|++ ++.+|+|.+.....+ ..+ +.++.+
T Consensus 14 ~~ivllHG~~~~--------------~~~w~-~~~~~L-~~~~~vi~---~Dl~G~G~S~~~~~~---~~~---~~~~~l 68 (256)
T PRK10349 14 VHLVLLHGWGLN--------------AEVWR-CIDEEL-SSHFTLHL---VDLPGFGRSRGFGAL---SLA---DMAEAV 68 (256)
T ss_pred CeEEEECCCCCC--------------hhHHH-HHHHHH-hcCCEEEE---ecCCCCCCCCCCCCC---CHH---HHHHHH
Confidence 569999995411 11111 223333 45699999 666788776433211 112 222233
Q ss_pred HHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEccCCCCCCCC---ccCc-----------cc---ccccch--
Q 004475 593 VRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGSYNKTLT---PFGF-----------QT---EFRTLW-- 653 (751)
Q Consensus 593 ~~~~~id~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~~d~~~~---~~~~-----------~~---~~~~~~-- 653 (751)
.+. ..+++.++||||||.+|+.+|.++|++++++|++++....... .... .. .....+
T Consensus 69 ~~~---~~~~~~lvGhS~Gg~ia~~~a~~~p~~v~~lili~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (256)
T PRK10349 69 LQQ---APDKAIWLGWSLGGLVASQIALTHPERVQALVTVASSPCFSARDEWPGIKPDVLAGFQQQLSDDFQRTVERFLA 145 (256)
T ss_pred Hhc---CCCCeEEEEECHHHHHHHHHHHhChHhhheEEEecCccceecCCCCCcccHHHHHHHHHHHHhchHHHHHHHHH
Confidence 332 2468999999999999999999999999999988763211000 0000 00 000000
Q ss_pred ----------hhH----------------------HHHHhcCcccccCCCCCCEEEEEcCCCCCCCCChHHHHHHHHHHH
Q 004475 654 ----------EAT----------------------NVYIEMSPITHANKIKKPILIIHGEVDDKVGLFPMQAERFFDALK 701 (751)
Q Consensus 654 ----------~~~----------------------~~~~~~~~~~~~~~~~~P~li~~G~~D~~vp~~~~~~~~~~~~l~ 701 (751)
... ..+...+....+.++++|+|+++|++|..+| ...+..+.+.+
T Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P~lii~G~~D~~~~--~~~~~~~~~~i- 222 (256)
T PRK10349 146 LQTMGTETARQDARALKKTVLALPMPEVDVLNGGLEILKTVDLRQPLQNVSMPFLRLYGYLDGLVP--RKVVPMLDKLW- 222 (256)
T ss_pred HHHccCchHHHHHHHHHHHhhccCCCcHHHHHHHHHHHHhCccHHHHhhcCCCeEEEecCCCccCC--HHHHHHHHHhC-
Confidence 000 0001112223456789999999999999988 77666555554
Q ss_pred hCCCcEEEEEeCCCCCcCCccccHHHHHHHHHHHHH
Q 004475 702 GHGALSRLVLLPFEHHVYAARENVMHVIWETDRWLQ 737 (751)
Q Consensus 702 ~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~fl~ 737 (751)
...++.++|++||... .+..+.+...+.+|-.
T Consensus 223 ---~~~~~~~i~~~gH~~~-~e~p~~f~~~l~~~~~ 254 (256)
T PRK10349 223 ---PHSESYIFAKAAHAPF-ISHPAEFCHLLVALKQ 254 (256)
T ss_pred ---CCCeEEEeCCCCCCcc-ccCHHHHHHHHHHHhc
Confidence 3458999999999876 5777888888887743
No 108
>PLN02578 hydrolase
Probab=99.47 E-value=2.2e-12 Score=134.56 Aligned_cols=170 Identities=21% Similarity=0.226 Sum_probs=107.9
Q ss_pred HhCCeEEEEcCCCCCCCCCCCCCCc--hhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeE
Q 004475 551 LARRFAVLAGPSIPIIGEGDKLPND--RFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCC 628 (751)
Q Consensus 551 ~~~G~~v~~~~~~~~~g~g~~~~~~--~~~~~~~~d~~~~v~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~p~~~~~ 628 (751)
..++|.|++ ++.+|+|.+.... .......+|+.+.++.+. .+++.++|||+||.+|+.+|.++|+++++
T Consensus 109 l~~~~~v~~---~D~~G~G~S~~~~~~~~~~~~a~~l~~~i~~~~------~~~~~lvG~S~Gg~ia~~~A~~~p~~v~~ 179 (354)
T PLN02578 109 LAKKYKVYA---LDLLGFGWSDKALIEYDAMVWRDQVADFVKEVV------KEPAVLVGNSLGGFTALSTAVGYPELVAG 179 (354)
T ss_pred HhcCCEEEE---ECCCCCCCCCCcccccCHHHHHHHHHHHHHHhc------cCCeEEEEECHHHHHHHHHHHhChHhcce
Confidence 356799999 5566777765432 122333455555554442 35799999999999999999999999999
Q ss_pred EEEccCCCCCCCCc------------cC---ccccc----------------c----------cchhh------------
Q 004475 629 GIARSGSYNKTLTP------------FG---FQTEF----------------R----------TLWEA------------ 655 (751)
Q Consensus 629 ~v~~~~~~d~~~~~------------~~---~~~~~----------------~----------~~~~~------------ 655 (751)
+|++++........ .. ..... . ..+..
T Consensus 180 lvLv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (354)
T PLN02578 180 VALLNSAGQFGSESREKEEAIVVEETVLTRFVVKPLKEWFQRVVLGFLFWQAKQPSRIESVLKSVYKDKSNVDDYLVESI 259 (354)
T ss_pred EEEECCCccccccccccccccccccchhhHHHhHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHhcCCcccCCHHHHHHH
Confidence 99877532110000 00 00000 0 00000
Q ss_pred ---------HHH-HH----------hcCcccccCCCCCCEEEEEcCCCCCCCCChHHHHHHHHHHHhCCCcEEEEEeCCC
Q 004475 656 ---------TNV-YI----------EMSPITHANKIKKPILIIHGEVDDKVGLFPMQAERFFDALKGHGALSRLVLLPFE 715 (751)
Q Consensus 656 ---------~~~-~~----------~~~~~~~~~~~~~P~li~~G~~D~~vp~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 715 (751)
.+. +. .......+.++++|+|+++|++|..+| ...+.++.+.+. +.+++++ ++
T Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~PvLiI~G~~D~~v~--~~~~~~l~~~~p----~a~l~~i-~~ 332 (354)
T PLN02578 260 TEPAADPNAGEVYYRLMSRFLFNQSRYTLDSLLSKLSCPLLLLWGDLDPWVG--PAKAEKIKAFYP----DTTLVNL-QA 332 (354)
T ss_pred HhcccCCchHHHHHHHHHHHhcCCCCCCHHHHhhcCCCCEEEEEeCCCCCCC--HHHHHHHHHhCC----CCEEEEe-CC
Confidence 000 00 001112356789999999999999998 888777766653 3467777 58
Q ss_pred CCcCCccccHHHHHHHHHHHHH
Q 004475 716 HHVYAARENVMHVIWETDRWLQ 737 (751)
Q Consensus 716 ~H~~~~~~~~~~~~~~~~~fl~ 737 (751)
||... .+...++.+.+.+|+.
T Consensus 333 GH~~~-~e~p~~~~~~I~~fl~ 353 (354)
T PLN02578 333 GHCPH-DEVPEQVNKALLEWLS 353 (354)
T ss_pred CCCcc-ccCHHHHHHHHHHHHh
Confidence 99986 6778889999999985
No 109
>PRK07581 hypothetical protein; Validated
Probab=99.47 E-value=1.2e-12 Score=136.12 Aligned_cols=181 Identities=15% Similarity=0.163 Sum_probs=113.6
Q ss_pred HHHhCCeEEEEcCCCCCCCCCCCCCCch----h-H-----HHHHHHHHHHHHHHHHcCCCCCCcE-EEEEeChHHHHHHH
Q 004475 549 IFLARRFAVLAGPSIPIIGEGDKLPNDR----F-V-----EQLVSSAEAAVEEVVRRGVADPSRI-AVGGHSYGAFMTAH 617 (751)
Q Consensus 549 ~~~~~G~~v~~~~~~~~~g~g~~~~~~~----~-~-----~~~~~d~~~~v~~l~~~~~id~~~i-~l~G~S~GG~~a~~ 617 (751)
.|...+|.|++ ++.+|+|.+..... + . ....+|+...+..+.+.- ..+++ .|+||||||.+|+.
T Consensus 66 ~l~~~~~~vi~---~D~~G~G~S~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l--gi~~~~~lvG~S~GG~va~~ 140 (339)
T PRK07581 66 ALDPEKYFIII---PNMFGNGLSSSPSNTPAPFNAARFPHVTIYDNVRAQHRLLTEKF--GIERLALVVGWSMGAQQTYH 140 (339)
T ss_pred ccCcCceEEEE---ecCCCCCCCCCCCCCCCCCCCCCCCceeHHHHHHHHHHHHHHHh--CCCceEEEEEeCHHHHHHHH
Confidence 34457899999 66678877643221 1 0 113455555444444322 23674 78999999999999
Q ss_pred HHHhCCCceeEEEEccCCCCCCC----------------CccC---cc--------------------cc-cc-cch---
Q 004475 618 LLAHAPHLFCCGIARSGSYNKTL----------------TPFG---FQ--------------------TE-FR-TLW--- 653 (751)
Q Consensus 618 ~a~~~p~~~~~~v~~~~~~d~~~----------------~~~~---~~--------------------~~-~~-~~~--- 653 (751)
++.++|++++++|++++...... ..+. +. .. .. ..+
T Consensus 141 ~a~~~P~~V~~Lvli~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (339)
T PRK07581 141 WAVRYPDMVERAAPIAGTAKTTPHNFVFLEGLKAALTADPAFNGGWYAEPPERGLRAHARVYAGWGFSQAFYRQELWRAM 220 (339)
T ss_pred HHHHCHHHHhhheeeecCCCCCHHHHHHHHHHHHHHHhCCCCCCCCCCCcHHHHHHHHHHHHHHHHhHHHHHHhhhcccc
Confidence 99999999999998865422000 0000 00 00 00 000
Q ss_pred --hh-HH----H-------------------HHhc----------CcccccCCCCCCEEEEEcCCCCCCCCChHHHHHHH
Q 004475 654 --EA-TN----V-------------------YIEM----------SPITHANKIKKPILIIHGEVDDKVGLFPMQAERFF 697 (751)
Q Consensus 654 --~~-~~----~-------------------~~~~----------~~~~~~~~~~~P~li~~G~~D~~vp~~~~~~~~~~ 697 (751)
.. .+ . +... .....+.++++|+|+++|++|..+| +..++.+.
T Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~~~L~~I~~PtLvI~G~~D~~~p--~~~~~~l~ 298 (339)
T PRK07581 221 GYASLEDFLVGFWEGNFLPRDPNNLLAMLWTWQRGDISRNPAYGGDLAAALGSITAKTFVMPISTDLYFP--PEDCEAEA 298 (339)
T ss_pred ChhhHHHHHHHHHHHhhcccCcccHHHHHHHhhhcccccCcccCCCHHHHHhcCCCCEEEEEeCCCCCCC--HHHHHHHH
Confidence 00 00 0 0000 1112345689999999999999998 88877776
Q ss_pred HHHHhCCCcEEEEEeCC-CCCcCCccccHHHHHHHHHHHHHHHhc
Q 004475 698 DALKGHGALSRLVLLPF-EHHVYAARENVMHVIWETDRWLQKYCL 741 (751)
Q Consensus 698 ~~l~~~~~~~~~~~~~~-~~H~~~~~~~~~~~~~~~~~fl~~~l~ 741 (751)
+.+. ..+++++++ +||... .+....+...+.+||.+.+.
T Consensus 299 ~~ip----~a~l~~i~~~~GH~~~-~~~~~~~~~~~~~~~~~~~~ 338 (339)
T PRK07581 299 ALIP----NAELRPIESIWGHLAG-FGQNPADIAFIDAALKELLA 338 (339)
T ss_pred HhCC----CCeEEEeCCCCCcccc-ccCcHHHHHHHHHHHHHHHh
Confidence 6653 358899998 899875 56677888999999998764
No 110
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.47 E-value=1.6e-11 Score=127.21 Aligned_cols=291 Identities=15% Similarity=0.160 Sum_probs=160.2
Q ss_pred ceeEEeecCCCCCCCCcccccCCCCcccccceeecCCCCeEEEEEeecccccccCCceeEEEEEcCCCCeeeccCCCCcc
Q 004475 5 TGIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDIC 84 (751)
Q Consensus 5 ~~~~~~~~~~~~~~g~~~~l~~~~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~~~~~l~i~~~~~g~~~~lt~~~~~~ 84 (751)
.+|+++.++. .+|+...+.........+..++|||+++|+.+.... ...+....|.++.++|+.+.+.......
T Consensus 13 ~gI~~~~~d~--~~g~l~~~~~~~~~~~Ps~l~~~~~~~~LY~~~e~~----~~~g~v~~~~i~~~~g~L~~~~~~~~~g 86 (345)
T PF10282_consen 13 GGIYVFRFDE--ETGTLTLVQTVAEGENPSWLAVSPDGRRLYVVNEGS----GDSGGVSSYRIDPDTGTLTLLNSVPSGG 86 (345)
T ss_dssp TEEEEEEEET--TTTEEEEEEEEEESSSECCEEE-TTSSEEEEEETTS----STTTEEEEEEEETTTTEEEEEEEEEESS
T ss_pred CcEEEEEEcC--CCCCceEeeeecCCCCCceEEEEeCCCEEEEEEccc----cCCCCEEEEEECCCcceeEEeeeeccCC
Confidence 4899999954 558877766444444667889999998887764311 1245566666676657766664332110
Q ss_pred ccceeeeeEEecCCcEEEEeecCCCCCCCCCCCCCCCCceeeccccccccchhhhhccCCccchhhhhhheeeEEEEEcC
Q 004475 85 LNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL 164 (751)
Q Consensus 85 ~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 164 (751)
. ....++.+|||++|+...... +.+.++++
T Consensus 87 ~--~p~~i~~~~~g~~l~vany~~------------------------------------------------g~v~v~~l 116 (345)
T PF10282_consen 87 S--SPCHIAVDPDGRFLYVANYGG------------------------------------------------GSVSVFPL 116 (345)
T ss_dssp S--CEEEEEECTTSSEEEEEETTT------------------------------------------------TEEEEEEE
T ss_pred C--CcEEEEEecCCCEEEEEEccC------------------------------------------------CeEEEEEc
Confidence 0 124668899999998874421 23444443
Q ss_pred --CCCceec---C------------CCceEEeeeeCCCCceEEEEEecCCcccccccCCCceeEEEEeCCCce--eeeec
Q 004475 165 --DGTAKDF---G------------TPAVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKL--VRELC 225 (751)
Q Consensus 165 --~G~~~~l---t------------~~~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~--~~~l~ 225 (751)
+|..... . .....+.+.++|||++|++.... ...|++++.+... +....
T Consensus 117 ~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG------------~D~v~~~~~~~~~~~l~~~~ 184 (345)
T PF10282_consen 117 DDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLG------------ADRVYVYDIDDDTGKLTPVD 184 (345)
T ss_dssp CTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETT------------TTEEEEEEE-TTS-TEEEEE
T ss_pred cCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecC------------CCEEEEEEEeCCCceEEEee
Confidence 4522111 0 11456689999999999886543 3357777776443 33211
Q ss_pred cCCCCCCCCCccCCccCCCceeeeecCCCceEEEEEeccCCCCccccCcccceeeccCCCCCCCCceEeEe---e----c
Q 004475 226 DLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHK---L----D 298 (751)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~spdG~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~---~----~ 298 (751)
... .....+.|.+.|+|||++ +|.+.. ..+.|.++++++.++ ..+.+.. . .
T Consensus 185 ~~~---------~~~G~GPRh~~f~pdg~~-~Yv~~e-----------~s~~v~v~~~~~~~g-~~~~~~~~~~~~~~~~ 242 (345)
T PF10282_consen 185 SIK---------VPPGSGPRHLAFSPDGKY-AYVVNE-----------LSNTVSVFDYDPSDG-SLTEIQTISTLPEGFT 242 (345)
T ss_dssp EEE---------CSTTSSEEEEEE-TTSSE-EEEEET-----------TTTEEEEEEEETTTT-EEEEEEEEESCETTSC
T ss_pred ccc---------cccCCCCcEEEEcCCcCE-EEEecC-----------CCCcEEEEeecccCC-ceeEEEEeeecccccc
Confidence 111 112356789999999998 555441 224555555531112 2222111 0 1
Q ss_pred e--eEE-EEEecCCceEEEeeeecccceeEEEecCCCCCCcceeeeecccccccCCCCCCCeeeCCCCCEEEEeeeecCC
Q 004475 299 L--RFS-VSWCDDSLALVNETWYKTSQTRTWLVCPGSKDVAPRVLFDRVFENVYSDPGSPMMTRTSTGTNVIAKIKKEND 375 (751)
Q Consensus 299 ~--~~~-~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~spDG~~l~~~~~~~~~ 375 (751)
+ ... +.+||||++|+.+. +....-.+|.++..++ ..+.+........ .+-.++++|||++|+.....
T Consensus 243 ~~~~~~~i~ispdg~~lyvsn-r~~~sI~vf~~d~~~g--~l~~~~~~~~~G~----~Pr~~~~s~~g~~l~Va~~~--- 312 (345)
T PF10282_consen 243 GENAPAEIAISPDGRFLYVSN-RGSNSISVFDLDPATG--TLTLVQTVPTGGK----FPRHFAFSPDGRYLYVANQD--- 312 (345)
T ss_dssp SSSSEEEEEE-TTSSEEEEEE-CTTTEEEEEEECTTTT--TEEEEEEEEESSS----SEEEEEE-TTSSEEEEEETT---
T ss_pred ccCCceeEEEecCCCEEEEEe-ccCCEEEEEEEecCCC--ceEEEEEEeCCCC----CccEEEEeCCCCEEEEEecC---
Confidence 1 234 88999999876544 4444445666655553 3333322111000 00117799999999887722
Q ss_pred cceEEEEccCCCCCCCCCceeEEEecCCCceeEEe
Q 004475 376 EQIYILLNGRGFTPEGNIPFLDLFDINTGSKERIW 410 (751)
Q Consensus 376 ~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l~ 410 (751)
.....++.+|.++|.++.+-
T Consensus 313 ---------------s~~v~vf~~d~~tG~l~~~~ 332 (345)
T PF10282_consen 313 ---------------SNTVSVFDIDPDTGKLTPVG 332 (345)
T ss_dssp ---------------TTEEEEEEEETTTTEEEEEE
T ss_pred ---------------CCeEEEEEEeCCCCcEEEec
Confidence 23445667777888876653
No 111
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=99.46 E-value=4.2e-11 Score=119.30 Aligned_cols=137 Identities=23% Similarity=0.274 Sum_probs=80.4
Q ss_pred cccceeecCCCCeEEEEEeecccccccCCceeEEEEEcCCCCeee-ccCCCCccccceeeeeEEecCCcEEEEeecCCCC
Q 004475 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKP-LFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRR 110 (751)
Q Consensus 32 ~~~~p~~SPDG~~iaf~~~~~~~~~~~~~~~~l~i~~~~~g~~~~-lt~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~ 110 (751)
-+...++||||+++|.+. ....++++|-.+|+..- |-....+ .+++..++||||+++++..+.+...
T Consensus 192 FV~~VRysPDG~~Fat~g----------sDgki~iyDGktge~vg~l~~~~aH--kGsIfalsWsPDs~~~~T~SaDkt~ 259 (603)
T KOG0318|consen 192 FVNCVRYSPDGSRFATAG----------SDGKIYIYDGKTGEKVGELEDSDAH--KGSIFALSWSPDSTQFLTVSADKTI 259 (603)
T ss_pred ceeeEEECCCCCeEEEec----------CCccEEEEcCCCccEEEEecCCCCc--cccEEEEEECCCCceEEEecCCceE
Confidence 568899999999999973 45789999988887443 3222222 3467899999999999987654322
Q ss_pred CCCCCCCCCCCCceeeccccccccchhhhhccCCccchhhhhhheeeEEEEEcCCCCce-----------ecCCC-ceEE
Q 004475 111 DPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSLDGTAK-----------DFGTP-AVYT 178 (751)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~G~~~-----------~lt~~-~~~~ 178 (751)
. .++.......++...+....+..+. -+| ...+|..+.++|.+. .+.-+ ..+.
T Consensus 260 K---IWdVs~~slv~t~~~~~~v~dqqvG---------~lW---qkd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~IT 324 (603)
T KOG0318|consen 260 K---IWDVSTNSLVSTWPMGSTVEDQQVG---------CLW---QKDHLITVSLSGTINYLNPSDPSVLKVISGHNKSIT 324 (603)
T ss_pred E---EEEeeccceEEEeecCCchhceEEE---------EEE---eCCeEEEEEcCcEEEEecccCCChhheeccccccee
Confidence 1 2222222222222211111111110 011 124566666666322 22223 6788
Q ss_pred eeeeCCCCceEEEEEec
Q 004475 179 AVEPSPDQKYVLITSMH 195 (751)
Q Consensus 179 ~~~~SpDG~~i~~~~~~ 195 (751)
.++.+|||++|+-.+.+
T Consensus 325 aLtv~~d~~~i~SgsyD 341 (603)
T KOG0318|consen 325 ALTVSPDGKTIYSGSYD 341 (603)
T ss_pred EEEEcCCCCEEEeeccC
Confidence 99999999998766544
No 112
>PRK14875 acetoin dehydrogenase E2 subunit dihydrolipoyllysine-residue acetyltransferase; Provisional
Probab=99.46 E-value=2.1e-12 Score=136.79 Aligned_cols=192 Identities=17% Similarity=0.116 Sum_probs=115.5
Q ss_pred ccEEEEEcCCCCcCcccCCcccCCCCccCCCCchHHHHHHhCCeEEEEcCCCCCCCCCCCCC--CchhHHHHHHHHHHHH
Q 004475 512 LPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGPSIPIIGEGDKLP--NDRFVEQLVSSAEAAV 589 (751)
Q Consensus 512 ~P~vv~~HGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~v~~~~~~~~~g~g~~~~--~~~~~~~~~~d~~~~v 589 (751)
.|.||++||.+. ....| ......+.++|.|++ ++.+|+|.+.. .........+++...+
T Consensus 131 ~~~vl~~HG~~~-----------~~~~~-----~~~~~~l~~~~~v~~---~d~~g~G~s~~~~~~~~~~~~~~~~~~~~ 191 (371)
T PRK14875 131 GTPVVLIHGFGG-----------DLNNW-----LFNHAALAAGRPVIA---LDLPGHGASSKAVGAGSLDELAAAVLAFL 191 (371)
T ss_pred CCeEEEECCCCC-----------ccchH-----HHHHHHHhcCCEEEE---EcCCCCCCCCCCCCCCCHHHHHHHHHHHH
Confidence 578999999531 11111 112223445699999 56667776632 2222334344433333
Q ss_pred HHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEccCCCCCCCCccCc----ccc-----------------
Q 004475 590 EEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGSYNKTLTPFGF----QTE----------------- 648 (751)
Q Consensus 590 ~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~~d~~~~~~~~----~~~----------------- 648 (751)
+ . ++..+++++|||+||.+|+.++..+|+++.+++++++..........+ ...
T Consensus 192 ~----~--~~~~~~~lvG~S~Gg~~a~~~a~~~~~~v~~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (371)
T PRK14875 192 D----A--LGIERAHLVGHSMGGAVALRLAARAPQRVASLTLIAPAGLGPEINGDYIDGFVAAESRRELKPVLELLFADP 265 (371)
T ss_pred H----h--cCCccEEEEeechHHHHHHHHHHhCchheeEEEEECcCCcCcccchhHHHHhhcccchhHHHHHHHHHhcCh
Confidence 2 2 345689999999999999999999999999999988753211000000 000
Q ss_pred cccchhh-------------HHH---HH---------hcCcccccCCCCCCEEEEEcCCCCCCCCChHHHHHHHHHHHhC
Q 004475 649 FRTLWEA-------------TNV---YI---------EMSPITHANKIKKPILIIHGEVDDKVGLFPMQAERFFDALKGH 703 (751)
Q Consensus 649 ~~~~~~~-------------~~~---~~---------~~~~~~~~~~~~~P~li~~G~~D~~vp~~~~~~~~~~~~l~~~ 703 (751)
....+.. ... +. ..+....+.++++|+|+++|++|..+| +..+..+.
T Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~Pvlii~g~~D~~vp--~~~~~~l~------ 337 (371)
T PRK14875 266 ALVTRQMVEDLLKYKRLDGVDDALRALADALFAGGRQRVDLRDRLASLAIPVLVIWGEQDRIIP--AAHAQGLP------ 337 (371)
T ss_pred hhCCHHHHHHHHHHhccccHHHHHHHHHHHhccCcccchhHHHHHhcCCCCEEEEEECCCCccC--HHHHhhcc------
Confidence 0000000 000 00 001112456789999999999999998 66654332
Q ss_pred CCcEEEEEeCCCCCcCCccccHHHHHHHHHHHHHH
Q 004475 704 GALSRLVLLPFEHHVYAARENVMHVIWETDRWLQK 738 (751)
Q Consensus 704 ~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~fl~~ 738 (751)
..+++.++++++|... .+....+.+.+.+||.+
T Consensus 338 -~~~~~~~~~~~gH~~~-~e~p~~~~~~i~~fl~~ 370 (371)
T PRK14875 338 -DGVAVHVLPGAGHMPQ-MEAAADVNRLLAEFLGK 370 (371)
T ss_pred -CCCeEEEeCCCCCChh-hhCHHHHHHHHHHHhcc
Confidence 2468899999999876 56667777788888764
No 113
>TIGR01392 homoserO_Ac_trn homoserine O-acetyltransferase. This family describes homoserine-O-acetyltransferase, an enzyme of methionine biosynthesis. This model has been rebuilt to identify sequences more broadly, including a number of sequences suggested to be homoserine O-acetyltransferase based on proximity to other Met biosynthesis genes.
Probab=99.46 E-value=2.3e-12 Score=134.50 Aligned_cols=68 Identities=19% Similarity=0.101 Sum_probs=54.5
Q ss_pred ccCCCCCCEEEEEcCCCCCCCCChHHHHHHHHHHHhCCCcEEEEE-eCCCCCcCCccccHHHHHHHHHHHHH
Q 004475 667 HANKIKKPILIIHGEVDDKVGLFPMQAERFFDALKGHGALSRLVL-LPFEHHVYAARENVMHVIWETDRWLQ 737 (751)
Q Consensus 667 ~~~~~~~P~li~~G~~D~~vp~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~H~~~~~~~~~~~~~~~~~fl~ 737 (751)
.+.+|++|+|+++|+.|..+| +..++.+.+.+......++++. ++++||... .+..+.+.+.+.+||.
T Consensus 283 ~l~~I~~P~Lvi~G~~D~~~p--~~~~~~~a~~i~~~~~~v~~~~i~~~~GH~~~-le~p~~~~~~l~~FL~ 351 (351)
T TIGR01392 283 ALSRIKAPFLVVSITSDWLFP--PAESRELAKALPAAGLRVTYVEIESPYGHDAF-LVETDQVEELIRGFLR 351 (351)
T ss_pred HHhhCCCCEEEEEeCCccccC--HHHHHHHHHHHhhcCCceEEEEeCCCCCcchh-hcCHHHHHHHHHHHhC
Confidence 456789999999999999998 9999999999887644444444 568999876 5677888889999873
No 114
>PRK03204 haloalkane dehalogenase; Provisional
Probab=99.46 E-value=2.5e-12 Score=129.97 Aligned_cols=196 Identities=14% Similarity=0.104 Sum_probs=114.8
Q ss_pred ccEEEEEcCCCCcCcccCCcccCCCCccCCCCchHHHHHHhCCeEEEEcCCCCCCCCCCCCCCchhHHHHHHHHHHHHHH
Q 004475 512 LPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGPSIPIIGEGDKLPNDRFVEQLVSSAEAAVEE 591 (751)
Q Consensus 512 ~P~vv~~HGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~v~~~~~~~~~g~g~~~~~~~~~~~~~~d~~~~v~~ 591 (751)
.|.||++||.+. .... +......+.++|.|++ ++.+|+|.+...... ....++..+.+..
T Consensus 34 ~~~iv~lHG~~~--------------~~~~--~~~~~~~l~~~~~vi~---~D~~G~G~S~~~~~~-~~~~~~~~~~~~~ 93 (286)
T PRK03204 34 GPPILLCHGNPT--------------WSFL--YRDIIVALRDRFRCVA---PDYLGFGLSERPSGF-GYQIDEHARVIGE 93 (286)
T ss_pred CCEEEEECCCCc--------------cHHH--HHHHHHHHhCCcEEEE---ECCCCCCCCCCCCcc-ccCHHHHHHHHHH
Confidence 378999999531 1111 1122233456799999 666688776543221 1123344444444
Q ss_pred HHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEccCCCCCCCC-c---c-----Cccccc---------c---
Q 004475 592 VVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGSYNKTLT-P---F-----GFQTEF---------R--- 650 (751)
Q Consensus 592 l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~~d~~~~-~---~-----~~~~~~---------~--- 650 (751)
+.+.. +..++.++||||||.+++.++..+|++++++|+.++..-.... . + ...... .
T Consensus 94 ~~~~~--~~~~~~lvG~S~Gg~va~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (286)
T PRK03204 94 FVDHL--GLDRYLSMGQDWGGPISMAVAVERADRVRGVVLGNTWFWPADTLAMKAFSRVMSSPPVQYAILRRNFFVERLI 171 (286)
T ss_pred HHHHh--CCCCEEEEEECccHHHHHHHHHhChhheeEEEEECccccCCCchhHHHHHHHhccccchhhhhhhhHHHHHhc
Confidence 44432 3467999999999999999999999999999987664310000 0 0 000000 0
Q ss_pred -----cch--hhHHHHH-----------------hcCc----ccc----cCC--CCCCEEEEEcCCCCCCCCChH-HHHH
Q 004475 651 -----TLW--EATNVYI-----------------EMSP----ITH----ANK--IKKPILIIHGEVDDKVGLFPM-QAER 695 (751)
Q Consensus 651 -----~~~--~~~~~~~-----------------~~~~----~~~----~~~--~~~P~li~~G~~D~~vp~~~~-~~~~ 695 (751)
... .....+. .... ... +.+ +++|+|+++|++|..++ +. ..+.
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~PtliI~G~~D~~~~--~~~~~~~ 249 (286)
T PRK03204 172 PAGTEHRPSSAVMAHYRAVQPNAAARRGVAEMPKQILAARPLLARLAREVPATLGTKPTLLVWGMKDVAFR--PKTILPR 249 (286)
T ss_pred cccccCCCCHHHHHHhcCCCCCHHHHHHHHHHHHhcchhhHHHHHhhhhhhhhcCCCCeEEEecCCCcccC--cHHHHHH
Confidence 000 0000000 0000 000 111 27999999999999875 44 3444
Q ss_pred HHHHHHhCCCcEEEEEeCCCCCcCCccccHHHHHHHHHHHH
Q 004475 696 FFDALKGHGALSRLVLLPFEHHVYAARENVMHVIWETDRWL 736 (751)
Q Consensus 696 ~~~~l~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~fl 736 (751)
+.+.+. ..++++++++||... .+..+.+.+.+.+||
T Consensus 250 ~~~~ip----~~~~~~i~~aGH~~~-~e~Pe~~~~~i~~~~ 285 (286)
T PRK03204 250 LRATFP----DHVLVELPNAKHFIQ-EDAPDRIAAAIIERF 285 (286)
T ss_pred HHHhcC----CCeEEEcCCCccccc-ccCHHHHHHHHHHhc
Confidence 554443 358999999999987 677888899999887
No 115
>TIGR03101 hydr2_PEP hydrolase, ortholog 2, exosortase system type 1 associated. This group of proteins are members of the alpha/beta hydrolase superfamily. These proteins are generally found in genomes containing the exosortase/PEP-CTERM protein expoert system, specifically the type 1 variant of this system described by the Genome Property GenProp0652. When found in this context they are invariably present in the vicinity of a second, relatively unrelated enzyme (ortholog 1, TIGR03100) of the same superfamily.
Probab=99.45 E-value=1.8e-11 Score=119.45 Aligned_cols=207 Identities=14% Similarity=0.074 Sum_probs=128.4
Q ss_pred EEEEcCCCceEEEEEEcCCCCCCCCCCCccEEEEEcCCCCcCcccCCcccCCCCccCCCCchHHHHHHhCCeEEEEcCCC
Q 004475 484 IKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGPSI 563 (751)
Q Consensus 484 i~~~~~~~~~i~~~~~~P~~~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~v~~~~~~ 563 (751)
+.+++..+ .+.++++.|.+ .++.|+||++||.+... +........++..|+++||.|+. +
T Consensus 3 ~~l~~~~g-~~~~~~~~p~~-----~~~~~~VlllHG~g~~~-----------~~~~~~~~~la~~La~~Gy~Vl~---~ 62 (266)
T TIGR03101 3 FFLDAPHG-FRFCLYHPPVA-----VGPRGVVIYLPPFAEEM-----------NKSRRMVALQARAFAAGGFGVLQ---I 62 (266)
T ss_pred EEecCCCC-cEEEEEecCCC-----CCCceEEEEECCCcccc-----------cchhHHHHHHHHHHHHCCCEEEE---E
Confidence 44555444 47788887765 23468999999953100 11111111345678889999999 5
Q ss_pred CCCCCCCCCCC--chhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEccCCCCCCCC
Q 004475 564 PIIGEGDKLPN--DRFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGSYNKTLT 641 (751)
Q Consensus 564 ~~~g~g~~~~~--~~~~~~~~~d~~~~v~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~~d~~~~ 641 (751)
+++|+|.+... ........+|+..+++++++.+ ..+|+++||||||.+++.++.++|+.++++|+++|+..-...
T Consensus 63 Dl~G~G~S~g~~~~~~~~~~~~Dv~~ai~~L~~~~---~~~v~LvG~SmGG~vAl~~A~~~p~~v~~lVL~~P~~~g~~~ 139 (266)
T TIGR03101 63 DLYGCGDSAGDFAAARWDVWKEDVAAAYRWLIEQG---HPPVTLWGLRLGALLALDAANPLAAKCNRLVLWQPVVSGKQQ 139 (266)
T ss_pred CCCCCCCCCCccccCCHHHHHHHHHHHHHHHHhcC---CCCEEEEEECHHHHHHHHHHHhCccccceEEEeccccchHHH
Confidence 66677766432 2234567899999999998763 468999999999999999999999999999999997551100
Q ss_pred ccC---c--c---cccccch--------------------h----hHHHHHhcCcccccCCCCCCEEEEEcCCCCCCCCC
Q 004475 642 PFG---F--Q---TEFRTLW--------------------E----ATNVYIEMSPITHANKIKKPILIIHGEVDDKVGLF 689 (751)
Q Consensus 642 ~~~---~--~---~~~~~~~--------------------~----~~~~~~~~~~~~~~~~~~~P~li~~G~~D~~vp~~ 689 (751)
... + . ....... . ....+........... ..++|++.-.-+.--+ .
T Consensus 140 l~~~lrl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~l~~~~~~-~~~~~~~~~~~~~~~~-~ 217 (266)
T TIGR03101 140 LQQFLRLRLVARRLGGESAEASNSLRERLLAGEDVEIAGYELAPALASDLDQRQLAPAVPK-NCPVHWFEVRPEEGAT-L 217 (266)
T ss_pred HHHHHHHHHHHHhccccccccchhHHhhccCCCeEEEeceecCHHHHHHHHhcccCCCCCC-CCceEEEEeccccCCC-C
Confidence 000 0 0 0000000 0 0011111111111111 4567877764332111 1
Q ss_pred hHHHHHHHHHHHhCCCcEEEEEeCCC
Q 004475 690 PMQAERFFDALKGHGALSRLVLLPFE 715 (751)
Q Consensus 690 ~~~~~~~~~~l~~~~~~~~~~~~~~~ 715 (751)
......+.+++.+.|..++...|++-
T Consensus 218 ~~~~~~l~~~~~~~g~~v~~~~~~~~ 243 (266)
T TIGR03101 218 SPVFSRLGEQWVQSGVEVTVDLVPGP 243 (266)
T ss_pred CHHHHHHHHHHHHcCCeEeeeecCCc
Confidence 45677889999999999999999987
No 116
>PRK00175 metX homoserine O-acetyltransferase; Provisional
Probab=99.45 E-value=6.3e-12 Score=132.07 Aligned_cols=72 Identities=17% Similarity=0.051 Sum_probs=61.1
Q ss_pred ccCCCCCCEEEEEcCCCCCCCCChHHHHHHHHHHHhCCCcEEEEEeC-CCCCcCCccccHHHHHHHHHHHHHHHhc
Q 004475 667 HANKIKKPILIIHGEVDDKVGLFPMQAERFFDALKGHGALSRLVLLP-FEHHVYAARENVMHVIWETDRWLQKYCL 741 (751)
Q Consensus 667 ~~~~~~~P~li~~G~~D~~vp~~~~~~~~~~~~l~~~~~~~~~~~~~-~~~H~~~~~~~~~~~~~~~~~fl~~~l~ 741 (751)
.+.+|++|+|+++|+.|..+| +..++++.+.+...+..+++.+++ ++||... .+...++.+.+.+||.+.-.
T Consensus 304 ~l~~I~~PtLvI~G~~D~~~p--~~~~~~la~~i~~a~~~~~l~~i~~~~GH~~~-le~p~~~~~~L~~FL~~~~~ 376 (379)
T PRK00175 304 ALARIKARFLVVSFTSDWLFP--PARSREIVDALLAAGADVSYAEIDSPYGHDAF-LLDDPRYGRLVRAFLERAAR 376 (379)
T ss_pred HHhcCCCCEEEEEECCccccC--HHHHHHHHHHHHhcCCCeEEEEeCCCCCchhH-hcCHHHHHHHHHHHHHhhhh
Confidence 346789999999999999998 999999999998877777888775 8999876 56677889999999987543
No 117
>PF12697 Abhydrolase_6: Alpha/beta hydrolase family; PDB: 3LLC_A 3A2N_E 3A2M_A 3A2L_A 3AFI_F 3C5V_A 3C5W_P 3E0X_A 2ZJF_A 3QYJ_A ....
Probab=99.44 E-value=4.6e-13 Score=130.88 Aligned_cols=159 Identities=24% Similarity=0.301 Sum_probs=103.7
Q ss_pred HHHHHHhCCeEEEEcCCCCCCCCCCCCCCc----hhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHh
Q 004475 546 SSLIFLARRFAVLAGPSIPIIGEGDKLPND----RFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAH 621 (751)
Q Consensus 546 ~~~~~~~~G~~v~~~~~~~~~g~g~~~~~~----~~~~~~~~d~~~~v~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~ 621 (751)
+...| ++||.|++ ++.+|+|.+.... ....+..+|+.++++.+. ..++.++|||+||.+++.++.+
T Consensus 17 ~~~~l-~~~~~v~~---~d~~G~G~s~~~~~~~~~~~~~~~~~l~~~l~~~~------~~~~~lvG~S~Gg~~a~~~a~~ 86 (228)
T PF12697_consen 17 LAEAL-ARGYRVIA---FDLPGHGRSDPPPDYSPYSIEDYAEDLAELLDALG------IKKVILVGHSMGGMIALRLAAR 86 (228)
T ss_dssp HHHHH-HTTSEEEE---EECTTSTTSSSHSSGSGGSHHHHHHHHHHHHHHTT------TSSEEEEEETHHHHHHHHHHHH
T ss_pred HHHHH-hCCCEEEE---EecCCccccccccccCCcchhhhhhhhhhcccccc------cccccccccccccccccccccc
Confidence 44455 58999999 6666787775432 234455555555554442 2689999999999999999999
Q ss_pred CCCceeEEEEccCCCCCCCCc--c----Cccc--------------ccccchhhH-----------HH--------HHhc
Q 004475 622 APHLFCCGIARSGSYNKTLTP--F----GFQT--------------EFRTLWEAT-----------NV--------YIEM 662 (751)
Q Consensus 622 ~p~~~~~~v~~~~~~d~~~~~--~----~~~~--------------~~~~~~~~~-----------~~--------~~~~ 662 (751)
+|++++++|++++........ . .+.. .....+... +. ....
T Consensus 87 ~p~~v~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (228)
T PF12697_consen 87 YPDRVKGLVLLSPPPPLPDSPSRSFGPSFIRRLLAWRSRSLRRLASRFFYRWFDGDEPEDLIRSSRRALAEYLRSNLWQA 166 (228)
T ss_dssp SGGGEEEEEEESESSSHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccccceeecccccccccccccccchhhhhhhhccccccccccccccccccccccccccccccccccccccccccccc
Confidence 999999999999976421100 0 0000 000000000 00 0112
Q ss_pred CcccccCCCCCCEEEEEcCCCCCCCCChHHHHHHHHHHHhCCCcEEEEEeCCCCCcCC
Q 004475 663 SPITHANKIKKPILIIHGEVDDKVGLFPMQAERFFDALKGHGALSRLVLLPFEHHVYA 720 (751)
Q Consensus 663 ~~~~~~~~~~~P~li~~G~~D~~vp~~~~~~~~~~~~l~~~~~~~~~~~~~~~~H~~~ 720 (751)
.....+.++++|+++++|++|..++ ....+.+.+.+ ..++++++++++|...
T Consensus 167 ~~~~~~~~~~~pvl~i~g~~D~~~~--~~~~~~~~~~~----~~~~~~~~~~~gH~~~ 218 (228)
T PF12697_consen 167 DLSEALPRIKVPVLVIHGEDDPIVP--PESAEELADKL----PNAELVVIPGAGHFLF 218 (228)
T ss_dssp HHHHHHHGSSSEEEEEEETTSSSSH--HHHHHHHHHHS----TTEEEEEETTSSSTHH
T ss_pred cccccccccCCCeEEeecCCCCCCC--HHHHHHHHHHC----CCCEEEEECCCCCccH
Confidence 2234566789999999999999987 66666665544 3579999999999865
No 118
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=99.44 E-value=9.1e-12 Score=119.04 Aligned_cols=85 Identities=22% Similarity=0.268 Sum_probs=57.8
Q ss_pred CCcceeEEeecCCCCCCCCcccccCCCC-cccccceeecCCCCeEEEEEeecccccccCCceeEEEEEcCCCC--eeecc
Q 004475 2 PFFTGIGIHRLLPDDSLGPEKEVHGYPD-GAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGE--AKPLF 78 (751)
Q Consensus 2 ~~~~~~~~~~~~~~~~~g~~~~l~~~~~-~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~~~~~l~i~~~~~g~--~~~lt 78 (751)
+..+.+.+||+.+ ++++-.... ..++...+|||||++||-- ...+.|.++++++|+ .+.|.
T Consensus 134 sGD~TvR~WD~~T------eTp~~t~KgH~~WVlcvawsPDgk~iASG----------~~dg~I~lwdpktg~~~g~~l~ 197 (480)
T KOG0271|consen 134 SGDTTVRLWDLDT------ETPLFTCKGHKNWVLCVAWSPDGKKIASG----------SKDGSIRLWDPKTGQQIGRALR 197 (480)
T ss_pred CCCceEEeeccCC------CCcceeecCCccEEEEEEECCCcchhhcc----------ccCCeEEEecCCCCCccccccc
Confidence 3456788999987 333332333 3389999999999999984 445788888988876 45564
Q ss_pred CCCCccccceeeeeEEe-----cCCcEEEEeecC
Q 004475 79 ESPDICLNAVFGSFVWV-----NNSTLLIFTIPS 107 (751)
Q Consensus 79 ~~~~~~~~~~~~~~~ws-----pDg~~l~~~~~~ 107 (751)
.... .+..++|- |.+++|+..+.+
T Consensus 198 gH~K-----~It~Lawep~hl~p~~r~las~skD 226 (480)
T KOG0271|consen 198 GHKK-----WITALAWEPLHLVPPCRRLASSSKD 226 (480)
T ss_pred Cccc-----ceeEEeecccccCCCccceecccCC
Confidence 4433 36677885 566766665443
No 119
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.43 E-value=1.4e-10 Score=120.21 Aligned_cols=263 Identities=13% Similarity=0.097 Sum_probs=139.8
Q ss_pred ceeEEeecCCCCCCCCcccccCCCCcccccceeecCCCCeEEEEEeecccccccCCceeEEEEEcC-CCCeeeccCCCCc
Q 004475 5 TGIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAE-TGEAKPLFESPDI 83 (751)
Q Consensus 5 ~~~~~~~~~~~~~~g~~~~l~~~~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~~~~~l~i~~~~-~g~~~~lt~~~~~ 83 (751)
-.|.++++.+ +|+.+.+..++........++||||++|+.... ....|.+++++ +|..+.+......
T Consensus 12 ~~I~~~~~~~---~g~l~~~~~~~~~~~~~~l~~spd~~~lyv~~~---------~~~~i~~~~~~~~g~l~~~~~~~~~ 79 (330)
T PRK11028 12 QQIHVWNLNH---EGALTLLQVVDVPGQVQPMVISPDKRHLYVGVR---------PEFRVLSYRIADDGALTFAAESPLP 79 (330)
T ss_pred CCEEEEEECC---CCceeeeeEEecCCCCccEEECCCCCEEEEEEC---------CCCcEEEEEECCCCceEEeeeecCC
Confidence 4689999964 255454443443334677899999998866432 22455555554 4544333211111
Q ss_pred cccceeeeeEEecCCcEEEEeecCCCCCCCCCCCCCCCCceeeccccccccchhhhhccCCccchhhhhhheeeEEEEEc
Q 004475 84 CLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGS 163 (751)
Q Consensus 84 ~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 163 (751)
.....++++|||++|+...... ..|.+++
T Consensus 80 ---~~p~~i~~~~~g~~l~v~~~~~------------------------------------------------~~v~v~~ 108 (330)
T PRK11028 80 ---GSPTHISTDHQGRFLFSASYNA------------------------------------------------NCVSVSP 108 (330)
T ss_pred ---CCceEEEECCCCCEEEEEEcCC------------------------------------------------CeEEEEE
Confidence 0235789999999988774320 2444454
Q ss_pred C--CCCc---eecCCC-ceEEeeeeCCCCceEEEEEecCCcccccccCCCceeEEEEeCCC-ceeeeeccCCCCCCCCCc
Q 004475 164 L--DGTA---KDFGTP-AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDG-KLVRELCDLPPAEDIPVC 236 (751)
Q Consensus 164 ~--~G~~---~~lt~~-~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~-~~~~~l~~~~~~~~~~~~ 236 (751)
+ +|.. ...... .....++++|||++|++.... ...|++|++++ +...........
T Consensus 109 ~~~~g~~~~~~~~~~~~~~~~~~~~~p~g~~l~v~~~~------------~~~v~v~d~~~~g~l~~~~~~~~~------ 170 (330)
T PRK11028 109 LDKDGIPVAPIQIIEGLEGCHSANIDPDNRTLWVPCLK------------EDRIRLFTLSDDGHLVAQEPAEVT------ 170 (330)
T ss_pred ECCCCCCCCceeeccCCCcccEeEeCCCCCEEEEeeCC------------CCEEEEEEECCCCcccccCCCcee------
Confidence 4 3422 111112 334567899999999886543 34688999875 322110000000
Q ss_pred cCCccCCCceeeeecCCCceEEEEEeccCCCCccccCcccceeeccCCCCCCCCceEeEe---ec------eeEE-EEEe
Q 004475 237 YNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHK---LD------LRFS-VSWC 306 (751)
Q Consensus 237 ~~~~~~~~~~~~~spdG~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~---~~------~~~~-~~~s 306 (751)
.....+++.+.|+|||++ ++.+.. ..+.|.++++++.++ ..+.+.. .+ .... +.++
T Consensus 171 -~~~g~~p~~~~~~pdg~~-lyv~~~-----------~~~~v~v~~~~~~~~-~~~~~~~~~~~p~~~~~~~~~~~i~~~ 236 (330)
T PRK11028 171 -TVEGAGPRHMVFHPNQQY-AYCVNE-----------LNSSVDVWQLKDPHG-EIECVQTLDMMPADFSDTRWAADIHIT 236 (330)
T ss_pred -cCCCCCCceEEECCCCCE-EEEEec-----------CCCEEEEEEEeCCCC-CEEEEEEEecCCCcCCCCccceeEEEC
Confidence 011234678999999998 555431 235677777642111 2222111 10 1112 5789
Q ss_pred cCCceEEEeeeecccceeEEEecCCCCCCcceeeeecccccccCCCCCCCeeeCCCCCEEEEee
Q 004475 307 DDSLALVNETWYKTSQTRTWLVCPGSKDVAPRVLFDRVFENVYSDPGSPMMTRTSTGTNVIAKI 370 (751)
Q Consensus 307 pdg~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~spDG~~l~~~~ 370 (751)
|||++|+.+ +.....-.+|.++.+++ ..+.+....... ....++++|||++|+...
T Consensus 237 pdg~~lyv~-~~~~~~I~v~~i~~~~~--~~~~~~~~~~~~-----~p~~~~~~~dg~~l~va~ 292 (330)
T PRK11028 237 PDGRHLYAC-DRTASLISVFSVSEDGS--VLSFEGHQPTET-----QPRGFNIDHSGKYLIAAG 292 (330)
T ss_pred CCCCEEEEe-cCCCCeEEEEEEeCCCC--eEEEeEEEeccc-----cCCceEECCCCCEEEEEE
Confidence 999987664 33333345555554442 111111111110 111278999999998866
No 120
>KOG3043 consensus Predicted hydrolase related to dienelactone hydrolase [General function prediction only]
Probab=99.42 E-value=1.6e-12 Score=116.57 Aligned_cols=165 Identities=21% Similarity=0.279 Sum_probs=122.4
Q ss_pred HHHHHHhCCeEEEEcCCCCCCCCCCCCC---Cchh-----HHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHH
Q 004475 546 SSLIFLARRFAVLAGPSIPIIGEGDKLP---NDRF-----VEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAH 617 (751)
Q Consensus 546 ~~~~~~~~G~~v~~~~~~~~~g~g~~~~---~~~~-----~~~~~~d~~~~v~~l~~~~~id~~~i~l~G~S~GG~~a~~ 617 (751)
.+..++..||.|+.||.+..--+..+.. ...+ .+....++...++||+.++ +..+|+++|++|||.++..
T Consensus 59 ~Adk~A~~Gy~v~vPD~~~Gdp~~~~~~~~~~~~w~~~~~~~~~~~~i~~v~k~lk~~g--~~kkIGv~GfCwGak~vv~ 136 (242)
T KOG3043|consen 59 GADKVALNGYTVLVPDFFRGDPWSPSLQKSERPEWMKGHSPPKIWKDITAVVKWLKNHG--DSKKIGVVGFCWGAKVVVT 136 (242)
T ss_pred HHHHHhcCCcEEEcchhhcCCCCCCCCChhhhHHHHhcCCcccchhHHHHHHHHHHHcC--CcceeeEEEEeecceEEEE
Confidence 3457778899999988743321211111 1111 1234688999999999765 4679999999999999999
Q ss_pred HHHhCCCceeEEEEccCCCCCCCCccCcccccccchhhHHHHHhcCcccccCCCCCCEEEEEcCCCCCCCCChHHHHHHH
Q 004475 618 LLAHAPHLFCCGIARSGSYNKTLTPFGFQTEFRTLWEATNVYIEMSPITHANKIKKPILIIHGEVDDKVGLFPMQAERFF 697 (751)
Q Consensus 618 ~a~~~p~~~~~~v~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~li~~G~~D~~vp~~~~~~~~~~ 697 (751)
+....| .|.++++..|.+-. ...+.++++|+|++.++.|..+| +....++-
T Consensus 137 ~~~~~~-~f~a~v~~hps~~d--------------------------~~D~~~vk~Pilfl~ae~D~~~p--~~~v~~~e 187 (242)
T KOG3043|consen 137 LSAKDP-EFDAGVSFHPSFVD--------------------------SADIANVKAPILFLFAELDEDVP--PKDVKAWE 187 (242)
T ss_pred eeccch-hheeeeEecCCcCC--------------------------hhHHhcCCCCEEEEeecccccCC--HHHHHHHH
Confidence 998886 78888888885321 12255688999999999999999 89988888
Q ss_pred HHHHhCCC-cEEEEEeCCCCCcCCcc----------ccHHHHHHHHHHHHHHHhc
Q 004475 698 DALKGHGA-LSRLVLLPFEHHVYAAR----------ENVMHVIWETDRWLQKYCL 741 (751)
Q Consensus 698 ~~l~~~~~-~~~~~~~~~~~H~~~~~----------~~~~~~~~~~~~fl~~~l~ 741 (751)
+.+.+..+ ..++.+|++.+|+|... ...++.++.++.||.+++.
T Consensus 188 e~lk~~~~~~~~v~~f~g~~HGf~~~r~~~~~Ped~~~~eea~~~~~~Wf~~y~~ 242 (242)
T KOG3043|consen 188 EKLKENPAVGSQVKTFSGVGHGFVARRANISSPEDKKAAEEAYQRFISWFKHYLA 242 (242)
T ss_pred HHHhcCcccceeEEEcCCccchhhhhccCCCChhHHHHHHHHHHHHHHHHHHhhC
Confidence 88886532 35799999999999741 1235678889999999873
No 121
>PRK08775 homoserine O-acetyltransferase; Provisional
Probab=99.42 E-value=3.1e-12 Score=133.03 Aligned_cols=175 Identities=18% Similarity=0.173 Sum_probs=111.6
Q ss_pred HHhCCeEEEEcCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHHHHcCCCCCCc-EEEEEeChHHHHHHHHHHhCCCceeE
Q 004475 550 FLARRFAVLAGPSIPIIGEGDKLPNDRFVEQLVSSAEAAVEEVVRRGVADPSR-IAVGGHSYGAFMTAHLLAHAPHLFCC 628 (751)
Q Consensus 550 ~~~~G~~v~~~~~~~~~g~g~~~~~~~~~~~~~~d~~~~v~~l~~~~~id~~~-i~l~G~S~GG~~a~~~a~~~p~~~~~ 628 (751)
|...+|.|++ .+.+|+|.+........+..+|+.+.++.+ +.++ +.++||||||++|+.++.++|+++++
T Consensus 95 L~~~~~~Vi~---~Dl~G~g~s~~~~~~~~~~a~dl~~ll~~l------~l~~~~~lvG~SmGG~vA~~~A~~~P~~V~~ 165 (343)
T PRK08775 95 LDPARFRLLA---FDFIGADGSLDVPIDTADQADAIALLLDAL------GIARLHAFVGYSYGALVGLQFASRHPARVRT 165 (343)
T ss_pred cCccccEEEE---EeCCCCCCCCCCCCCHHHHHHHHHHHHHHc------CCCcceEEEEECHHHHHHHHHHHHChHhhhe
Confidence 3356899999 455577665433223345566666555544 2234 57999999999999999999999999
Q ss_pred EEEccCCCCCCCCc--cC------------------------------ccc-c-cccchh------------hHH-----
Q 004475 629 GIARSGSYNKTLTP--FG------------------------------FQT-E-FRTLWE------------ATN----- 657 (751)
Q Consensus 629 ~v~~~~~~d~~~~~--~~------------------------------~~~-~-~~~~~~------------~~~----- 657 (751)
+|++++........ +. +.. . ....+. ...
T Consensus 166 LvLi~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 245 (343)
T PRK08775 166 LVVVSGAHRAHPYAAAWRALQRRAVALGQLQCAEKHGLALARQLAMLSYRTPEEFEERFDAPPEVINGRVRVAAEDYLDA 245 (343)
T ss_pred EEEECccccCCHHHHHHHHHHHHHHHcCCCCCCchhHHHHHHHHHHHHcCCHHHHHHHhCCCccccCCCccchHHHHHHH
Confidence 99998753211000 00 000 0 000000 000
Q ss_pred ----HHHhcC-------------cccccCCCCCCEEEEEcCCCCCCCCChHHHHHHHHHHHhCCCcEEEEEeCC-CCCcC
Q 004475 658 ----VYIEMS-------------PITHANKIKKPILIIHGEVDDKVGLFPMQAERFFDALKGHGALSRLVLLPF-EHHVY 719 (751)
Q Consensus 658 ----~~~~~~-------------~~~~~~~~~~P~li~~G~~D~~vp~~~~~~~~~~~~l~~~~~~~~~~~~~~-~~H~~ 719 (751)
...... ....+.++++|+|+++|+.|.++| +..+..+.+.+. ...+++++++ +||..
T Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~I~~PtLvi~G~~D~~~p--~~~~~~~~~~i~---p~a~l~~i~~~aGH~~ 320 (343)
T PRK08775 246 AGAQYVARTPVNAYLRLSESIDLHRVDPEAIRVPTVVVAVEGDRLVP--LADLVELAEGLG---PRGSLRVLRSPYGHDA 320 (343)
T ss_pred HHHHHHHhcChhHHHHHHHHHhhcCCChhcCCCCeEEEEeCCCEeeC--HHHHHHHHHHcC---CCCeEEEEeCCccHHH
Confidence 000000 011246789999999999999998 887777776653 2357999985 99987
Q ss_pred CccccHHHHHHHHHHHHHHH
Q 004475 720 AARENVMHVIWETDRWLQKY 739 (751)
Q Consensus 720 ~~~~~~~~~~~~~~~fl~~~ 739 (751)
. .+..+.+...+.+||.+.
T Consensus 321 ~-lE~Pe~~~~~l~~FL~~~ 339 (343)
T PRK08775 321 F-LKETDRIDAILTTALRST 339 (343)
T ss_pred H-hcCHHHHHHHHHHHHHhc
Confidence 6 677889999999999754
No 122
>PRK10439 enterobactin/ferric enterobactin esterase; Provisional
Probab=99.42 E-value=3.2e-11 Score=125.94 Aligned_cols=220 Identities=14% Similarity=0.030 Sum_probs=132.8
Q ss_pred ceEEEEEEcC-CCceEEEEEEcCCCCCCCCCCCccEEEEEcCCCCcCcccCCcccCCCCccCCCCchHHHHHHhCCe---
Q 004475 480 QKEMIKYQRK-DGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRF--- 555 (751)
Q Consensus 480 ~~e~i~~~~~-~~~~i~~~~~~P~~~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~--- 555 (751)
..+.+.+.+. -|.....++|+|+++. +.++|+|+++||..|.. ..........+.+.|.
T Consensus 179 ~~~~~~~~S~~Lg~~r~v~VY~P~~y~---~~~~PvlyllDG~~w~~--------------~~~~~~~ld~li~~g~i~P 241 (411)
T PRK10439 179 PAKEIIWKSERLGNSRRVWIYTTGDAA---PEERPLAILLDGQFWAE--------------SMPVWPALDSLTHRGQLPP 241 (411)
T ss_pred ceEEEEEEccccCCceEEEEEECCCCC---CCCCCEEEEEECHHhhh--------------cCCHHHHHHHHHHcCCCCc
Confidence 3455666553 4567899999998875 23599999999964321 0001123345566663
Q ss_pred -EEEEcCCCCCCCCCCC-CCCchhHHHHHHHHHHHHHHHHHcC--CCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEE
Q 004475 556 -AVLAGPSIPIIGEGDK-LPNDRFVEQLVSSAEAAVEEVVRRG--VADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIA 631 (751)
Q Consensus 556 -~v~~~~~~~~~g~g~~-~~~~~~~~~~~~d~~~~v~~l~~~~--~id~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~ 631 (751)
+++.++..+....... .....+...+.+++ +-++.++. ..|+++.+|.|+||||..|+.++.++|+.|.++++
T Consensus 242 ~ivV~id~~~~~~R~~el~~~~~f~~~l~~eL---lP~I~~~y~~~~d~~~~~IaG~S~GGl~AL~~al~~Pd~Fg~v~s 318 (411)
T PRK10439 242 AVYLLIDAIDTTHRSQELPCNADFWLAVQQEL---LPQVRAIAPFSDDADRTVVAGQSFGGLAALYAGLHWPERFGCVLS 318 (411)
T ss_pred eEEEEECCCCcccccccCCchHHHHHHHHHHH---HHHHHHhCCCCCCccceEEEEEChHHHHHHHHHHhCcccccEEEE
Confidence 3455443221111111 11223444444544 44444442 24778999999999999999999999999999999
Q ss_pred ccCCCCCCCCccCcccccccchhhHHHHHhcCcccccCCCCCCEEEEEcCCCCCCCCChHHHHHHHHHHHhCCCcEEEEE
Q 004475 632 RSGSYNKTLTPFGFQTEFRTLWEATNVYIEMSPITHANKIKKPILIIHGEVDDKVGLFPMQAERFFDALKGHGALSRLVL 711 (751)
Q Consensus 632 ~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~li~~G~~D~~vp~~~~~~~~~~~~l~~~~~~~~~~~ 711 (751)
++|.+-+.... .....| ..+.+... ........++|-+|+.|..+ ...++++++.|+++|.++++.+
T Consensus 319 ~Sgs~ww~~~~-----~~~~~~-l~~~l~~~----~~~~~~lr~~i~~G~~E~~~---~~~~~~l~~~L~~~G~~~~~~~ 385 (411)
T PRK10439 319 QSGSFWWPHRG-----GQQEGV-LLEQLKAG----EVSARGLRIVLEAGRREPMI---MRANQALYAQLHPAGHSVFWRQ 385 (411)
T ss_pred eccceecCCcc-----CCchhH-HHHHHHhc----ccCCCCceEEEeCCCCCchH---HHHHHHHHHHHHHCCCcEEEEE
Confidence 99964211100 000001 01111110 01112346899999998654 5778999999999999999999
Q ss_pred eCCCCCcCCccccHHHHHHHHHHHH
Q 004475 712 LPFEHHVYAARENVMHVIWETDRWL 736 (751)
Q Consensus 712 ~~~~~H~~~~~~~~~~~~~~~~~fl 736 (751)
++| ||... .+...+...+.||
T Consensus 386 ~~G-GHd~~---~Wr~~L~~~L~~l 406 (411)
T PRK10439 386 VDG-GHDAL---CWRGGLIQGLIDL 406 (411)
T ss_pred CCC-CcCHH---HHHHHHHHHHHHH
Confidence 998 69743 2334444444444
No 123
>PLN03084 alpha/beta hydrolase fold protein; Provisional
Probab=99.42 E-value=2.4e-11 Score=125.89 Aligned_cols=193 Identities=15% Similarity=0.127 Sum_probs=122.4
Q ss_pred ccEEEEEcCCCCcCcccCCcccCCCCccCCCCchHHHHHHhCCeEEEEcCCCCCCCCCCCCCCc------hhHHHHHHHH
Q 004475 512 LPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGPSIPIIGEGDKLPND------RFVEQLVSSA 585 (751)
Q Consensus 512 ~P~vv~~HGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~v~~~~~~~~~g~g~~~~~~------~~~~~~~~d~ 585 (751)
.|.||++||.+. ....|. .....| ..+|.|++ ++.+|+|.+.... .......+++
T Consensus 127 ~~~ivllHG~~~--------------~~~~w~-~~~~~L-~~~~~Via---~DlpG~G~S~~p~~~~~~~ys~~~~a~~l 187 (383)
T PLN03084 127 NPPVLLIHGFPS--------------QAYSYR-KVLPVL-SKNYHAIA---FDWLGFGFSDKPQPGYGFNYTLDEYVSSL 187 (383)
T ss_pred CCeEEEECCCCC--------------CHHHHH-HHHHHH-hcCCEEEE---ECCCCCCCCCCCcccccccCCHHHHHHHH
Confidence 478999999641 111111 223333 46899999 6677888765432 2345566666
Q ss_pred HHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEccCCCCCCC--CccC-----------------cc
Q 004475 586 EAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGSYNKTL--TPFG-----------------FQ 646 (751)
Q Consensus 586 ~~~v~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~~d~~~--~~~~-----------------~~ 646 (751)
...++.+ ..+++.|+|||+||.+++.++.++|++++++|++++...... .+.. ..
T Consensus 188 ~~~i~~l------~~~~~~LvG~s~GG~ia~~~a~~~P~~v~~lILi~~~~~~~~~~~p~~l~~~~~~l~~~~~~~~~~~ 261 (383)
T PLN03084 188 ESLIDEL------KSDKVSLVVQGYFSPPVVKYASAHPDKIKKLILLNPPLTKEHAKLPSTLSEFSNFLLGEIFSQDPLR 261 (383)
T ss_pred HHHHHHh------CCCCceEEEECHHHHHHHHHHHhChHhhcEEEEECCCCccccccchHHHHHHHHHHhhhhhhcchHH
Confidence 6666555 235799999999999999999999999999999998642110 0000 00
Q ss_pred -------c--------cc----ccchh--------hHHHHHhcC-cc-------c---ccCCCCCCEEEEEcCCCCCCCC
Q 004475 647 -------T--------EF----RTLWE--------ATNVYIEMS-PI-------T---HANKIKKPILIIHGEVDDKVGL 688 (751)
Q Consensus 647 -------~--------~~----~~~~~--------~~~~~~~~~-~~-------~---~~~~~~~P~li~~G~~D~~vp~ 688 (751)
. +. ..++. ....+.... .. . ...++++|+|+++|+.|..++
T Consensus 262 ~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~l~~~~r~~~~~l~~~~~~l~~~l~~~~i~vPvLiI~G~~D~~v~- 340 (383)
T PLN03084 262 ASDKALTSCGPYAMKEDDAMVYRRPYLTSGSSGFALNAISRSMKKELKKYIEEMRSILTDKNWKTPITVCWGLRDRWLN- 340 (383)
T ss_pred HHhhhhcccCccCCCHHHHHHHhccccCCcchHHHHHHHHHHhhcccchhhHHHHhhhccccCCCCEEEEeeCCCCCcC-
Confidence 0 00 00000 000000000 00 0 013478999999999999988
Q ss_pred ChHHHHHHHHHHHhCCCcEEEEEeCCCCCcCCccccHHHHHHHHHHHHH
Q 004475 689 FPMQAERFFDALKGHGALSRLVLLPFEHHVYAARENVMHVIWETDRWLQ 737 (751)
Q Consensus 689 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~fl~ 737 (751)
...++++.+.. +.++.++|+++|... .+..+++...+.+||.
T Consensus 341 -~~~~~~~a~~~-----~a~l~vIp~aGH~~~-~E~Pe~v~~~I~~Fl~ 382 (383)
T PLN03084 341 -YDGVEDFCKSS-----QHKLIELPMAGHHVQ-EDCGEELGGIISGILS 382 (383)
T ss_pred -HHHHHHHHHhc-----CCeEEEECCCCCCcc-hhCHHHHHHHHHHHhh
Confidence 77666665542 458999999999876 5778889999999885
No 124
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=99.41 E-value=2.6e-11 Score=117.67 Aligned_cols=269 Identities=16% Similarity=0.121 Sum_probs=160.5
Q ss_pred cccccceeecCCCCeEEEEEeecccccccCCceeEEEEEcCCCCeeeccCCCCccccceeeeeEEecC--CcEEEEeecC
Q 004475 30 GAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNN--STLLIFTIPS 107 (751)
Q Consensus 30 ~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~~~~~l~i~~~~~g~~~~lt~~~~~~~~~~~~~~~wspD--g~~l~~~~~~ 107 (751)
...+....||+||+.||..+. ++...||-++ +.+..+...+... .+..+.|+|. +..|+..+.+
T Consensus 175 ~rPis~~~fS~ds~~laT~sw--------sG~~kvW~~~--~~~~~~~l~gH~~----~v~~~~fhP~~~~~~lat~s~D 240 (459)
T KOG0272|consen 175 TRPISGCSFSRDSKHLATGSW--------SGLVKVWSVP--QCNLLQTLRGHTS----RVGAAVFHPVDSDLNLATASAD 240 (459)
T ss_pred CCcceeeEeecCCCeEEEeec--------CCceeEeecC--CcceeEEEecccc----ceeeEEEccCCCccceeeeccC
Confidence 335778899999999999764 5556666554 6665555544432 3678899998 5567665443
Q ss_pred CCCCCCCCCCCCCCCceeeccccccccchhhhhccCCccchhhhhhheeeEEEEEcCCCCceecCCC-ceEEeeeeCCCC
Q 004475 108 SRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSLDGTAKDFGTP-AVYTAVEPSPDQ 186 (751)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~G~~~~lt~~-~~~~~~~~SpDG 186 (751)
+...||.++-+-....|+.+ ..+..++|.|+|
T Consensus 241 -----------------------------------------------gtvklw~~~~e~~l~~l~gH~~RVs~VafHPsG 273 (459)
T KOG0272|consen 241 -----------------------------------------------GTVKLWKLSQETPLQDLEGHLARVSRVAFHPSG 273 (459)
T ss_pred -----------------------------------------------CceeeeccCCCcchhhhhcchhhheeeeecCCC
Confidence 11234443333356667766 778899999999
Q ss_pred ceEEEEEecCCcccccccCCCceeEEEEeCCCceeeeeccCCCCCCCCCccCCccCCCceeeeecCCCceEEEEEeccCC
Q 004475 187 KYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRG 266 (751)
Q Consensus 187 ~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~spdG~~~i~~~~~~~~~ 266 (751)
++|...+.+. ...+||+.++..-.+- .....++.+++|.|||.- +.+..-
T Consensus 274 ~~L~TasfD~-------------tWRlWD~~tk~ElL~Q------------EGHs~~v~~iaf~~DGSL--~~tGGl--- 323 (459)
T KOG0272|consen 274 KFLGTASFDS-------------TWRLWDLETKSELLLQ------------EGHSKGVFSIAFQPDGSL--AATGGL--- 323 (459)
T ss_pred ceeeeccccc-------------chhhcccccchhhHhh------------cccccccceeEecCCCce--eeccCc---
Confidence 9999876654 3448999987543221 122345779999999984 443211
Q ss_pred CCccccCcccceeeccCCCCCCCCceEeEeeceeEE-EEEecCCceEEEeeeecccceeEEEecCCCCCCcceeeeeccc
Q 004475 267 DANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFS-VSWCDDSLALVNETWYKTSQTRTWLVCPGSKDVAPRVLFDRVF 345 (751)
Q Consensus 267 ~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~-~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~ 345 (751)
..--.++|+- ++...-.+...-..+. +.|||+|..|+..+. ...-.||.+..... ..+.....
T Consensus 324 --------D~~~RvWDlR--tgr~im~L~gH~k~I~~V~fsPNGy~lATgs~--Dnt~kVWDLR~r~~----ly~ipAH~ 387 (459)
T KOG0272|consen 324 --------DSLGRVWDLR--TGRCIMFLAGHIKEILSVAFSPNGYHLATGSS--DNTCKVWDLRMRSE----LYTIPAHS 387 (459)
T ss_pred --------cchhheeecc--cCcEEEEecccccceeeEeECCCceEEeecCC--CCcEEEeeeccccc----ceeccccc
Confidence 1122334442 1333333334444555 899999999988763 22345665544331 22222222
Q ss_pred ccccCCCCCCCeeeCCC-CCEEEEeeeecCCcceEEEEccCCCCCCCCCceeEEEecCCCceeE-Eeeccchhhhhceee
Q 004475 346 ENVYSDPGSPMMTRTST-GTNVIAKIKKENDEQIYILLNGRGFTPEGNIPFLDLFDINTGSKER-IWESNREKYFETAVA 423 (751)
Q Consensus 346 ~~~~~~~~~~~~~~spD-G~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~-l~~~~~~~~~~~~~~ 423 (751)
+-+.. +.|+|+ |..|+..+- ...+.+|...+....+ |...+++ +..
T Consensus 388 nlVS~------Vk~~p~~g~fL~Tasy---------------------D~t~kiWs~~~~~~~ksLaGHe~k-----V~s 435 (459)
T KOG0272|consen 388 NLVSQ------VKYSPQEGYFLVTASY---------------------DNTVKIWSTRTWSPLKSLAGHEGK-----VIS 435 (459)
T ss_pred chhhh------eEecccCCeEEEEccc---------------------CcceeeecCCCcccchhhcCCccc-----eEE
Confidence 32222 789984 666666552 2356777777665533 3333322 333
Q ss_pred eecCCcceeeccCCCEEEEEE
Q 004475 424 LVFGQGEEDINLNQLKILTSK 444 (751)
Q Consensus 424 ~~~~~~~~~~s~dg~~l~~~~ 444 (751)
+++|+||..++-..
T Consensus 436 -------~Dis~d~~~i~t~s 449 (459)
T KOG0272|consen 436 -------LDISPDSQAIATSS 449 (459)
T ss_pred -------EEeccCCceEEEec
Confidence 47899998777553
No 125
>PRK11126 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase; Provisional
Probab=99.41 E-value=9.1e-12 Score=123.20 Aligned_cols=188 Identities=15% Similarity=0.091 Sum_probs=112.1
Q ss_pred ccEEEEEcCCCCcCcccCCcccCCCCccCCCCchHHHHHHhCCeEEEEcCCCCCCCCCCCCCCch-hHHHHHHHHHHHHH
Q 004475 512 LPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGPSIPIIGEGDKLPNDR-FVEQLVSSAEAAVE 590 (751)
Q Consensus 512 ~P~vv~~HGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~v~~~~~~~~~g~g~~~~~~~-~~~~~~~d~~~~v~ 590 (751)
.|.||++||.+.. ...|. .....| .+|.|++ ++.+|+|.+..... ......+|+.+.++
T Consensus 2 ~p~vvllHG~~~~--------------~~~w~-~~~~~l--~~~~vi~---~D~~G~G~S~~~~~~~~~~~~~~l~~~l~ 61 (242)
T PRK11126 2 LPWLVFLHGLLGS--------------GQDWQ-PVGEAL--PDYPRLY---IDLPGHGGSAAISVDGFADVSRLLSQTLQ 61 (242)
T ss_pred CCEEEEECCCCCC--------------hHHHH-HHHHHc--CCCCEEE---ecCCCCCCCCCccccCHHHHHHHHHHHHH
Confidence 3789999996421 11111 223333 4799999 66778877644321 23344444444444
Q ss_pred HHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCc-eeEEEEccCCCCCCCCc-----------cC--ccccc-------
Q 004475 591 EVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHL-FCCGIARSGSYNKTLTP-----------FG--FQTEF------- 649 (751)
Q Consensus 591 ~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~p~~-~~~~v~~~~~~d~~~~~-----------~~--~~~~~------- 649 (751)
.+ +.+++.++||||||.+|+.++.++|+. ++++++.++........ +. +....
T Consensus 62 ~~------~~~~~~lvG~S~Gg~va~~~a~~~~~~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (242)
T PRK11126 62 SY------NILPYWLVGYSLGGRIAMYYACQGLAGGLCGLIVEGGNPGLQNAEERQARWQNDRQWAQRFRQEPLEQVLAD 135 (242)
T ss_pred Hc------CCCCeEEEEECHHHHHHHHHHHhCCcccccEEEEeCCCCCCCCHHHHHHHHhhhHHHHHHhccCcHHHHHHH
Confidence 32 346899999999999999999998654 99998877543211000 00 00000
Q ss_pred ---cc-----chhhHHH----------------HHhc------CcccccCCCCCCEEEEEcCCCCCCCCChHHHHHHHHH
Q 004475 650 ---RT-----LWEATNV----------------YIEM------SPITHANKIKKPILIIHGEVDDKVGLFPMQAERFFDA 699 (751)
Q Consensus 650 ---~~-----~~~~~~~----------------~~~~------~~~~~~~~~~~P~li~~G~~D~~vp~~~~~~~~~~~~ 699 (751)
.. ....... +... .....+.++++|+++++|++|..+. . +.+.
T Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P~lii~G~~D~~~~---~----~~~~ 208 (242)
T PRK11126 136 WYQQPVFASLNAEQRQQLVAKRSNNNGAAVAAMLEATSLAKQPDLRPALQALTFPFYYLCGERDSKFQ---A----LAQQ 208 (242)
T ss_pred HHhcchhhccCccHHHHHHHhcccCCHHHHHHHHHhcCcccCCcHHHHhhccCCCeEEEEeCCcchHH---H----HHHH
Confidence 00 0000000 0000 1112456789999999999998532 1 2221
Q ss_pred HHhCCCcEEEEEeCCCCCcCCccccHHHHHHHHHHHHHH
Q 004475 700 LKGHGALSRLVLLPFEHHVYAARENVMHVIWETDRWLQK 738 (751)
Q Consensus 700 l~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~fl~~ 738 (751)
...++++++++||.+. .+..+.+.+.+.+||..
T Consensus 209 -----~~~~~~~i~~~gH~~~-~e~p~~~~~~i~~fl~~ 241 (242)
T PRK11126 209 -----LALPLHVIPNAGHNAH-RENPAAFAASLAQILRL 241 (242)
T ss_pred -----hcCeEEEeCCCCCchh-hhChHHHHHHHHHHHhh
Confidence 1468999999999876 67788889999999864
No 126
>COG3509 LpqC Poly(3-hydroxybutyrate) depolymerase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.40 E-value=2.2e-11 Score=114.63 Aligned_cols=226 Identities=19% Similarity=0.171 Sum_probs=135.5
Q ss_pred CCCceEEEEEEcCCCCCCCCCCCccEEEEEcCCCCcCcccCCcccCCCCccCCCCchHHHHHH-hCCeEEEEcCCCCCCC
Q 004475 489 KDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFL-ARRFAVLAGPSIPIIG 567 (751)
Q Consensus 489 ~~~~~i~~~~~~P~~~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~G~~v~~~~~~~~~g 567 (751)
.++....+++|.|+....+ .|+||++||++.. ..++.+. .+ ...++ ..||.|++++.++..-
T Consensus 42 ~~g~~r~y~l~vP~g~~~~----apLvv~LHG~~~s---gag~~~~--sg--------~d~lAd~~gFlV~yPdg~~~~w 104 (312)
T COG3509 42 VNGLKRSYRLYVPPGLPSG----APLVVVLHGSGGS---GAGQLHG--TG--------WDALADREGFLVAYPDGYDRAW 104 (312)
T ss_pred cCCCccceEEEcCCCCCCC----CCEEEEEecCCCC---hHHhhcc--cc--------hhhhhcccCcEEECcCcccccc
Confidence 4677899999999885432 4999999998532 2222221 11 12334 5799999975543322
Q ss_pred ----CCCCCCCc--hhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEccCCCCCCCC
Q 004475 568 ----EGDKLPND--RFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGSYNKTLT 641 (751)
Q Consensus 568 ----~g~~~~~~--~~~~~~~~d~~~~v~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~~d~~~~ 641 (751)
.+....+. ....+.+..+.++++.|..+..||+.||++.|.|.||.|+..+++.+|+.|.++..+++.......
T Consensus 105 n~~~~~~~~~p~~~~~g~ddVgflr~lva~l~~~~gidp~RVyvtGlS~GG~Ma~~lac~~p~~faa~A~VAg~~~~~~a 184 (312)
T COG3509 105 NANGCGNWFGPADRRRGVDDVGFLRALVAKLVNEYGIDPARVYVTGLSNGGRMANRLACEYPDIFAAIAPVAGLLALGVA 184 (312)
T ss_pred CCCcccccCCcccccCCccHHHHHHHHHHHHHHhcCcCcceEEEEeeCcHHHHHHHHHhcCcccccceeeeecccCCCcc
Confidence 12221111 223456788899999999999999999999999999999999999999999999998886520000
Q ss_pred ccCcccccccchhhHHHHHhcCcccccCCCCCCEEEEEcCCCCCCCCChHHHHHHHHHHHh-------------------
Q 004475 642 PFGFQTEFRTLWEATNVYIEMSPITHANKIKKPILIIHGEVDDKVGLFPMQAERFFDALKG------------------- 702 (751)
Q Consensus 642 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~li~~G~~D~~vp~~~~~~~~~~~~l~~------------------- 702 (751)
.....+......--..+|......=..| |-+|..|..++ .....+..+.+..
T Consensus 185 -----~~~~rp~~~m~~~G~~Dp~~p~~gG~~~--~g~g~~~~~v~--~~~~~~~Waa~ng~~~~p~~~~~~~~~~~~~~ 255 (312)
T COG3509 185 -----CTPPRPVSVMAFHGTADPLNPYHGGGVP--IGRGQRDGVVS--AADLAARWAAVNGCQAGPDTAELPDVGDGTDY 255 (312)
T ss_pred -----cCCCCchhHHHhcCCCCCCCCCCCCCcc--ccccccccccc--HHHHHHHHHHhcCCCCCCcccccCCCccccee
Confidence 0000000000000011111100000122 66777777654 4444444444321
Q ss_pred ----CCCcEEEEEeCCCCCcCCccccH-----------HHHHHHHHHHHHHHh
Q 004475 703 ----HGALSRLVLLPFEHHVYAARENV-----------MHVIWETDRWLQKYC 740 (751)
Q Consensus 703 ----~~~~~~~~~~~~~~H~~~~~~~~-----------~~~~~~~~~fl~~~l 740 (751)
.+..+++..+.+.||.+...... -+..++|.+||..+-
T Consensus 256 ~~~~~~~~V~~y~i~g~GH~wp~~~~~~~~~~g~~t~~~dat~~iw~Ff~~~~ 308 (312)
T COG3509 256 DTCDGNARVELYTIDGGGHTWPGGTQYGPAALGMSTRGFDATERIWRFFRQHR 308 (312)
T ss_pred eccCCCcceEEEEEeCCcccCcCCCCCCcccccccccCcchHHHHHHHHHhcc
Confidence 12358899999999987532211 235678889998764
No 127
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.40 E-value=1.3e-11 Score=119.08 Aligned_cols=196 Identities=14% Similarity=0.129 Sum_probs=124.4
Q ss_pred cccceeecCCCCeEEEEEeecccccccCCceeEEEEEcCCCCeeeccCCCCccccceeeeeEEecCCcEEEEeecCCCCC
Q 004475 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRD 111 (751)
Q Consensus 32 ~~~~p~~SPDG~~iaf~~~~~~~~~~~~~~~~l~i~~~~~g~~~~lt~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~ 111 (751)
++.+..||++|++||-.+. +...-+|.+..++. .+..-...++ ...+..+.||||.++|+....+
T Consensus 226 EVWfl~FS~nGkyLAsaSk--------D~Taiiw~v~~d~~-~kl~~tlvgh--~~~V~yi~wSPDdryLlaCg~~---- 290 (519)
T KOG0293|consen 226 EVWFLQFSHNGKYLASASK--------DSTAIIWIVVYDVH-FKLKKTLVGH--SQPVSYIMWSPDDRYLLACGFD---- 290 (519)
T ss_pred cEEEEEEcCCCeeEeeccC--------CceEEEEEEecCcc-eeeeeeeecc--cCceEEEEECCCCCeEEecCch----
Confidence 5889999999999999764 55567787776544 2222111221 1147788999999998866321
Q ss_pred CCCCCCCCCCCceeeccccccccchhhhhccCCccchhhhhhheeeEEEEEcC-CCCceecCCC---ceEEeeeeCCCCc
Q 004475 112 PPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DGTAKDFGTP---AVYTAVEPSPDQK 187 (751)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~G~~~~lt~~---~~~~~~~~SpDG~ 187 (751)
..++++|+ +|+.+.+-.. ..+.+.+|-|||.
T Consensus 291 ---------------------------------------------e~~~lwDv~tgd~~~~y~~~~~~S~~sc~W~pDg~ 325 (519)
T KOG0293|consen 291 ---------------------------------------------EVLSLWDVDTGDLRHLYPSGLGFSVSSCAWCPDGF 325 (519)
T ss_pred ---------------------------------------------HheeeccCCcchhhhhcccCcCCCcceeEEccCCc
Confidence 25788898 7755544322 4567999999999
Q ss_pred eEEEEEecCCcccccccCCCceeEEEEeCCCceeeeeccCCCCCCCCCccCCccCCCceeeeecCCCceEEEEEeccCCC
Q 004475 188 YVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGD 267 (751)
Q Consensus 188 ~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~spdG~~~i~~~~~~~~~~ 267 (751)
+++.-+.+ ..++.|++++..... -.+.. . .-+..++.++||++++....
T Consensus 326 ~~V~Gs~d-------------r~i~~wdlDgn~~~~---W~gvr-~--------~~v~dlait~Dgk~vl~v~~------ 374 (519)
T KOG0293|consen 326 RFVTGSPD-------------RTIIMWDLDGNILGN---WEGVR-D--------PKVHDLAITYDGKYVLLVTV------ 374 (519)
T ss_pred eeEecCCC-------------CcEEEecCCcchhhc---ccccc-c--------ceeEEEEEcCCCcEEEEEec------
Confidence 98765443 368899999875321 11110 0 12457899999999444432
Q ss_pred CccccCcccceeeccCCCCCCCCceEeEeeceeEE-EEEecCCceEEEeeeecccceeEEEecCCC
Q 004475 268 ANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFS-VSWCDDSLALVNETWYKTSQTRTWLVCPGS 332 (751)
Q Consensus 268 ~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~-~~~spdg~~l~~~~~~~~~~~~l~~~~~~~ 332 (751)
...+++++.+ ...-+.+......+. +..|.||+.+...- .. .++.+.|++.
T Consensus 375 -------d~~i~l~~~e---~~~dr~lise~~~its~~iS~d~k~~LvnL--~~--qei~LWDl~e 426 (519)
T KOG0293|consen 375 -------DKKIRLYNRE---ARVDRGLISEEQPITSFSISKDGKLALVNL--QD--QEIHLWDLEE 426 (519)
T ss_pred -------ccceeeechh---hhhhhccccccCceeEEEEcCCCcEEEEEc--cc--CeeEEeecch
Confidence 2467778776 222232444445556 89999999765533 22 3455556654
No 128
>KOG1838 consensus Alpha/beta hydrolase [General function prediction only]
Probab=99.38 E-value=4.6e-11 Score=119.41 Aligned_cols=241 Identities=15% Similarity=0.122 Sum_probs=152.7
Q ss_pred cCCceEEEEEEcCCCceEEEEEEcCCCCCC-CCCCCccEEEEEcCCCCcCcccCCcccCCCCccCCCCchHHHHHHhCCe
Q 004475 477 ASLQKEMIKYQRKDGVPLTATLYLPPGYDQ-SKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRF 555 (751)
Q Consensus 477 ~~~~~e~i~~~~~~~~~i~~~~~~P~~~~~-~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~ 555 (751)
+....++..+...||..+...++.+..... .+.+..|+||++||-. + .+...+-..+...+..+||
T Consensus 89 p~~~y~Reii~~~DGG~~~lDW~~~~~~~~~~~~~~~P~vvilpGlt-----------g--~S~~~YVr~lv~~a~~~G~ 155 (409)
T KOG1838|consen 89 PPVEYTREIIKTSDGGTVTLDWVENPDSRCRTDDGTDPIVVILPGLT-----------G--GSHESYVRHLVHEAQRKGY 155 (409)
T ss_pred CCCcceeEEEEeCCCCEEEEeeccCcccccCCCCCCCcEEEEecCCC-----------C--CChhHHHHHHHHHHHhCCc
Confidence 334455555566688889999887765321 1223579999999942 1 1222333344556677999
Q ss_pred EEEEcCCCCCCCCCCCC--CCchhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCC--ceeEEEE
Q 004475 556 AVLAGPSIPIIGEGDKL--PNDRFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPH--LFCCGIA 631 (751)
Q Consensus 556 ~v~~~~~~~~~g~g~~~--~~~~~~~~~~~d~~~~v~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~p~--~~~~~v~ 631 (751)
.++..+.+ |.+++. .+..|.....+|+.+++++++++.. ..++..+|+||||.+...++....+ .+.++++
T Consensus 156 r~VVfN~R---G~~g~~LtTpr~f~ag~t~Dl~~~v~~i~~~~P--~a~l~avG~S~Gg~iL~nYLGE~g~~~~l~~a~~ 230 (409)
T KOG1838|consen 156 RVVVFNHR---GLGGSKLTTPRLFTAGWTEDLREVVNHIKKRYP--QAPLFAVGFSMGGNILTNYLGEEGDNTPLIAAVA 230 (409)
T ss_pred EEEEECCC---CCCCCccCCCceeecCCHHHHHHHHHHHHHhCC--CCceEEEEecchHHHHHHHhhhccCCCCceeEEE
Confidence 99994444 544442 2333444557999999999998753 3589999999999999999987633 3666666
Q ss_pred ccCCCCCCCCccCc-----------------c----------ccc----------c-------------cchh-hHHHHH
Q 004475 632 RSGSYNKTLTPFGF-----------------Q----------TEF----------R-------------TLWE-ATNVYI 660 (751)
Q Consensus 632 ~~~~~d~~~~~~~~-----------------~----------~~~----------~-------------~~~~-~~~~~~ 660 (751)
++..+|.......+ . .+. . .-++ ..+.|.
T Consensus 231 v~~Pwd~~~~~~~~~~~~~~~~y~~~l~~~l~~~~~~~r~~~~~~~vd~d~~~~~~SvreFD~~~t~~~~gf~~~deYY~ 310 (409)
T KOG1838|consen 231 VCNPWDLLAASRSIETPLYRRFYNRALTLNLKRIVLRHRHTLFEDPVDFDVILKSRSVREFDEALTRPMFGFKSVDEYYK 310 (409)
T ss_pred EeccchhhhhhhHHhcccchHHHHHHHHHhHHHHHhhhhhhhhhccchhhhhhhcCcHHHHHhhhhhhhcCCCcHHHHHh
Confidence 66655521000000 0 000 0 0001 134567
Q ss_pred hcCcccccCCCCCCEEEEEcCCCCCCCCChHHHHHHHHHHHhCCCcEEEEEeCCCCCcCCccc---cHHHHHHH-HHHHH
Q 004475 661 EMSPITHANKIKKPILIIHGEVDDKVGLFPMQAERFFDALKGHGALSRLVLLPFEHHVYAARE---NVMHVIWE-TDRWL 736 (751)
Q Consensus 661 ~~~~~~~~~~~~~P~li~~G~~D~~vp~~~~~~~~~~~~l~~~~~~~~~~~~~~~~H~~~~~~---~~~~~~~~-~~~fl 736 (751)
+.++...+++|++|+|.|+..+|+++| .. +.-. +.. ..+..+-+++-..+||.-.... ....++++ +.+|+
T Consensus 311 ~aSs~~~v~~I~VP~L~ina~DDPv~p--~~-~ip~-~~~-~~np~v~l~~T~~GGHlgfleg~~p~~~~w~~~~l~ef~ 385 (409)
T KOG1838|consen 311 KASSSNYVDKIKVPLLCINAADDPVVP--EE-AIPI-DDI-KSNPNVLLVITSHGGHLGFLEGLWPSARTWMDKLLVEFL 385 (409)
T ss_pred hcchhhhcccccccEEEEecCCCCCCC--cc-cCCH-HHH-hcCCcEEEEEeCCCceeeeeccCCCccchhHHHHHHHHH
Confidence 778889999999999999999999998 32 2112 222 2345788888889999643322 34455666 78888
Q ss_pred HHHh
Q 004475 737 QKYC 740 (751)
Q Consensus 737 ~~~l 740 (751)
.+..
T Consensus 386 ~~~~ 389 (409)
T KOG1838|consen 386 GNAI 389 (409)
T ss_pred HHHH
Confidence 7654
No 129
>KOG1454 consensus Predicted hydrolase/acyltransferase (alpha/beta hydrolase superfamily) [General function prediction only]
Probab=99.37 E-value=8e-12 Score=126.40 Aligned_cols=202 Identities=21% Similarity=0.157 Sum_probs=119.0
Q ss_pred CccEEEEEcCCCCcCcccCCcccCCCCccCCCCchHHHHHHh-CCeEEEEcCCCCCCCCC-CCCCCchhHHHHHHHHHHH
Q 004475 511 PLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLA-RRFAVLAGPSIPIIGEG-DKLPNDRFVEQLVSSAEAA 588 (751)
Q Consensus 511 ~~P~vv~~HGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~G~~v~~~~~~~~~g~g-~~~~~~~~~~~~~~d~~~~ 588 (751)
..|.||++||-+ ++...|... ...+.. .|+.|++ .+..|+| .+..+....-...+.+...
T Consensus 57 ~~~pvlllHGF~-----------~~~~~w~~~----~~~L~~~~~~~v~a---iDl~G~g~~s~~~~~~~y~~~~~v~~i 118 (326)
T KOG1454|consen 57 DKPPVLLLHGFG-----------ASSFSWRRV----VPLLSKAKGLRVLA---IDLPGHGYSSPLPRGPLYTLRELVELI 118 (326)
T ss_pred CCCcEEEecccc-----------CCcccHhhh----ccccccccceEEEE---EecCCCCcCCCCCCCCceehhHHHHHH
Confidence 468899999943 111222211 112222 3699999 5555655 2222222212222222233
Q ss_pred HHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEE---EccCCCCCCCCc----------c------Cc---c
Q 004475 589 VEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGI---ARSGSYNKTLTP----------F------GF---Q 646 (751)
Q Consensus 589 v~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v---~~~~~~d~~~~~----------~------~~---~ 646 (751)
.+.+.+... .++.++|||+||.+|..+|+.+|+.++.++ +..+.+...... . .. .
T Consensus 119 ~~~~~~~~~---~~~~lvghS~Gg~va~~~Aa~~P~~V~~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~ 195 (326)
T KOG1454|consen 119 RRFVKEVFV---EPVSLVGHSLGGIVALKAAAYYPETVDSLVLLDLLGPPVYSTPKGIKGLRRLLDKFLSALELLIPLSL 195 (326)
T ss_pred HHHHHhhcC---cceEEEEeCcHHHHHHHHHHhCcccccceeeecccccccccCCcchhHHHHhhhhhccHhhhcCcccc
Confidence 333333332 459999999999999999999999999999 555432210000 0 00 0
Q ss_pred ccc-------------------ccchhhH--------------HHH-------H--hcCcccccCCCC-CCEEEEEcCCC
Q 004475 647 TEF-------------------RTLWEAT--------------NVY-------I--EMSPITHANKIK-KPILIIHGEVD 683 (751)
Q Consensus 647 ~~~-------------------~~~~~~~--------------~~~-------~--~~~~~~~~~~~~-~P~li~~G~~D 683 (751)
... ...+... +.+ . +......++++. +|+|+++|+.|
T Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~pvlii~G~~D 275 (326)
T KOG1454|consen 196 TEPVRLVSEGLLRCLKVVYTDPSRLLEKLLHLLSRPVKEHFHRDARLSLFLELLGFDENLLSLIKKIWKCPVLIIWGDKD 275 (326)
T ss_pred ccchhheeHhhhcceeeeccccccchhhhhhheecccccchhhhheeeEEEeccCccchHHHhhccccCCceEEEEcCcC
Confidence 000 0000000 000 0 012223455666 99999999999
Q ss_pred CCCCCChHHHHHHHHHHHhCCCcEEEEEeCCCCCcCCccccHHHHHHHHHHHHHHHh
Q 004475 684 DKVGLFPMQAERFFDALKGHGALSRLVLLPFEHHVYAARENVMHVIWETDRWLQKYC 740 (751)
Q Consensus 684 ~~vp~~~~~~~~~~~~l~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~fl~~~l 740 (751)
+.+| .+.+..+.+.+ ..+++++++++||.... +..+.+...+..|+..+.
T Consensus 276 ~~~p--~~~~~~~~~~~----pn~~~~~I~~~gH~~h~-e~Pe~~~~~i~~Fi~~~~ 325 (326)
T KOG1454|consen 276 QIVP--LELAEELKKKL----PNAELVEIPGAGHLPHL-ERPEEVAALLRSFIARLR 325 (326)
T ss_pred CccC--HHHHHHHHhhC----CCceEEEeCCCCccccc-CCHHHHHHHHHHHHHHhc
Confidence 9999 77666665544 56799999999999874 788899999999998753
No 130
>KOG3101 consensus Esterase D [General function prediction only]
Probab=99.37 E-value=8.4e-12 Score=109.87 Aligned_cols=213 Identities=18% Similarity=0.187 Sum_probs=133.4
Q ss_pred ceEEEEEEcCCCCCCCCCCCccEEEEEcCCCCcCcccCCcccCCCCccCCCCchHHHHHHhCCeEEEEcCCCCCCC----
Q 004475 492 VPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGPSIPIIG---- 567 (751)
Q Consensus 492 ~~i~~~~~~P~~~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~v~~~~~~~~~g---- 567 (751)
-.+..-+|+|+.+..++ +.|++.++.|. .+....|..-. ...+.....|++|+.||.. -+|
T Consensus 26 c~Mtf~vylPp~a~~~k--~~P~lf~LSGL-----------TCT~~Nfi~Ks-g~qq~As~hgl~vV~PDTS-PRG~~v~ 90 (283)
T KOG3101|consen 26 CSMTFGVYLPPDAPRGK--RCPVLFYLSGL-----------TCTHENFIEKS-GFQQQASKHGLAVVAPDTS-PRGVEVA 90 (283)
T ss_pred cceEEEEecCCCcccCC--cCceEEEecCC-----------cccchhhHhhh-hHHHhHhhcCeEEECCCCC-CCccccC
Confidence 35777888998765544 58999999983 33333333221 1122334679999996652 222
Q ss_pred -CCCCCC---Cch---------hH--HHHHHHH-HHHHHHHH-HcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEE
Q 004475 568 -EGDKLP---NDR---------FV--EQLVSSA-EAAVEEVV-RRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGI 630 (751)
Q Consensus 568 -~g~~~~---~~~---------~~--~~~~~d~-~~~v~~l~-~~~~id~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v 630 (751)
..++.. +.. +. ..++.-+ .+..+-+. ..-.+|+.+++|+||||||+-|+..++++|.+++.+-
T Consensus 91 g~~eswDFG~GAGFYvnAt~epw~~~yrMYdYv~kELp~~l~~~~~pld~~k~~IfGHSMGGhGAl~~~Lkn~~kykSvS 170 (283)
T KOG3101|consen 91 GDDESWDFGQGAGFYVNATQEPWAKHYRMYDYVVKELPQLLNSANVPLDPLKVGIFGHSMGGHGALTIYLKNPSKYKSVS 170 (283)
T ss_pred CCcccccccCCceeEEecccchHhhhhhHHHHHHHHHHHHhccccccccchhcceeccccCCCceEEEEEcCccccccee
Confidence 111100 001 10 0111111 12222222 1235899999999999999999999999999999999
Q ss_pred EccCCCCCCCCccCcccccccchhhHHHHHhcCccccc---CCCCCCEEEEEcCCCCCCCCChHH-HHHHHHHHHhC-CC
Q 004475 631 ARSGSYNKTLTPFGFQTEFRTLWEATNVYIEMSPITHA---NKIKKPILIIHGEVDDKVGLFPMQ-AERFFDALKGH-GA 705 (751)
Q Consensus 631 ~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~P~li~~G~~D~~vp~~~~~-~~~~~~~l~~~-~~ 705 (751)
+++|+.+....+|+.....+..-.+...|..+++...+ .....-+||-+|..|++.+ -+. -..+.++.++. ..
T Consensus 171 AFAPI~NP~~cpWGqKAf~gYLG~~ka~W~~yDat~lik~y~~~~~~ilIdqG~~D~Fl~--~qLlPe~l~~a~~~~~~~ 248 (283)
T KOG3101|consen 171 AFAPICNPINCPWGQKAFTGYLGDNKAQWEAYDATHLIKNYRGVGDDILIDQGAADNFLA--EQLLPENLLEACKATWQA 248 (283)
T ss_pred ccccccCcccCcchHHHhhcccCCChHHHhhcchHHHHHhcCCCCccEEEecCccchhhh--hhcChHHHHHHhhccccc
Confidence 99999999888887655544444455556666554433 4445669999999998753 111 22334444432 26
Q ss_pred cEEEEEeCCCCCcCCc
Q 004475 706 LSRLVLLPFEHHVYAA 721 (751)
Q Consensus 706 ~~~~~~~~~~~H~~~~ 721 (751)
++.++..++-.|.+..
T Consensus 249 ~v~~r~~~gyDHSYyf 264 (283)
T KOG3101|consen 249 PVVFRLQEGYDHSYYF 264 (283)
T ss_pred cEEEEeecCCCcceee
Confidence 7888999999998764
No 131
>PLN02211 methyl indole-3-acetate methyltransferase
Probab=99.37 E-value=2.8e-11 Score=120.99 Aligned_cols=194 Identities=13% Similarity=0.114 Sum_probs=113.8
Q ss_pred ccEEEEEcCCCCcCcccCCcccCCCCccCCCCchHHHHHHhCCeEEEEcCCCCCCCCCCCCCCc---hhHHHHHHHHHHH
Q 004475 512 LPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGPSIPIIGEGDKLPND---RFVEQLVSSAEAA 588 (751)
Q Consensus 512 ~P~vv~~HGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~v~~~~~~~~~g~g~~~~~~---~~~~~~~~d~~~~ 588 (751)
.|.||++||.+. .+..| ..+...|.++||.|++ ++.+|+|.+.... ...++..+++.
T Consensus 18 ~p~vvliHG~~~-----------~~~~w----~~~~~~L~~~g~~vi~---~dl~g~G~s~~~~~~~~~~~~~~~~l~-- 77 (273)
T PLN02211 18 PPHFVLIHGISG-----------GSWCW----YKIRCLMENSGYKVTC---IDLKSAGIDQSDADSVTTFDEYNKPLI-- 77 (273)
T ss_pred CCeEEEECCCCC-----------CcCcH----HHHHHHHHhCCCEEEE---ecccCCCCCCCCcccCCCHHHHHHHHH--
Confidence 589999999641 11111 1334466678999999 5666777653221 23334444444
Q ss_pred HHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEccCCCCCCC---C-----c--------------cCcc
Q 004475 589 VEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGSYNKTL---T-----P--------------FGFQ 646 (751)
Q Consensus 589 v~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~~d~~~---~-----~--------------~~~~ 646 (751)
+++.+.. ...+++++||||||.+++.++.++|++++++|++++...... . . +...
T Consensus 78 -~~i~~l~--~~~~v~lvGhS~GG~v~~~~a~~~p~~v~~lv~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (273)
T PLN02211 78 -DFLSSLP--ENEKVILVGHSAGGLSVTQAIHRFPKKICLAVYVAATMLKLGFQTDEDMKDGVPDLSEFGDVYELGFGLG 154 (273)
T ss_pred -HHHHhcC--CCCCEEEEEECchHHHHHHHHHhChhheeEEEEeccccCCCCCCHHHHHhccccchhhhccceeeeeccC
Confidence 3443332 136899999999999999999999999999999876421000 0 0 0000
Q ss_pred c--ccccc-h--h---------hH----HHHHh------cCccc------ccCCC-CCCEEEEEcCCCCCCCCChHHHHH
Q 004475 647 T--EFRTL-W--E---------AT----NVYIE------MSPIT------HANKI-KKPILIIHGEVDDKVGLFPMQAER 695 (751)
Q Consensus 647 ~--~~~~~-~--~---------~~----~~~~~------~~~~~------~~~~~-~~P~li~~G~~D~~vp~~~~~~~~ 695 (751)
. ..... . . .+ ..+.. ...+. ...++ ++|+++|.|++|..+| +...+.
T Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vP~l~I~g~~D~~ip--~~~~~~ 232 (273)
T PLN02211 155 PDQPPTSAIIKKEFRRKILYQMSPQEDSTLAAMLLRPGPILALRSARFEEETGDIDKVPRVYIKTLHDHVVK--PEQQEA 232 (273)
T ss_pred CCCCCceeeeCHHHHHHHHhcCCCHHHHHHHHHhcCCcCccccccccccccccccCccceEEEEeCCCCCCC--HHHHHH
Confidence 0 00000 0 0 00 00000 00110 12234 6899999999999998 888777
Q ss_pred HHHHHHhCCCcEEEEEeCCCCCcCCccccHHHHHHHHHHHH
Q 004475 696 FFDALKGHGALSRLVLLPFEHHVYAARENVMHVIWETDRWL 736 (751)
Q Consensus 696 ~~~~l~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~fl 736 (751)
+.+.+.. .+++.++ +||..+ .+..+.+...+.+..
T Consensus 233 m~~~~~~----~~~~~l~-~gH~p~-ls~P~~~~~~i~~~a 267 (273)
T PLN02211 233 MIKRWPP----SQVYELE-SDHSPF-FSTPFLLFGLLIKAA 267 (273)
T ss_pred HHHhCCc----cEEEEEC-CCCCcc-ccCHHHHHHHHHHHH
Confidence 7766542 2677886 799865 455666665555543
No 132
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=99.36 E-value=5.1e-10 Score=113.25 Aligned_cols=265 Identities=15% Similarity=0.123 Sum_probs=160.7
Q ss_pred cccceeecCCCCeEEEEEeecccccccCCceeEEEEEcCCCCeeeccCCCCccccceeeeeEEecCCcEEEEeecCCCCC
Q 004475 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRD 111 (751)
Q Consensus 32 ~~~~p~~SPDG~~iaf~~~~~~~~~~~~~~~~l~i~~~~~g~~~~lt~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~ 111 (751)
.+....|+|||+.|++.. ..+.+++++..+++.......... .+..+.|+|+++.|+....+
T Consensus 11 ~i~~~~~~~~~~~l~~~~----------~~g~i~i~~~~~~~~~~~~~~~~~----~i~~~~~~~~~~~l~~~~~~---- 72 (289)
T cd00200 11 GVTCVAFSPDGKLLATGS----------GDGTIKVWDLETGELLRTLKGHTG----PVRDVAASADGTYLASGSSD---- 72 (289)
T ss_pred CEEEEEEcCCCCEEEEee----------cCcEEEEEEeeCCCcEEEEecCCc----ceeEEEECCCCCEEEEEcCC----
Confidence 578999999999999863 246777778777653332222211 24588999999888877431
Q ss_pred CCCCCCCCCCCceeeccccccccchhhhhccCCccchhhhhhheeeEEEEEcC-CC-CceecCCC-ceEEeeeeCCCCce
Q 004475 112 PPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DG-TAKDFGTP-AVYTAVEPSPDQKY 188 (751)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~G-~~~~lt~~-~~~~~~~~SpDG~~ 188 (751)
..|.++++ ++ ....+..+ ..+..+.|+|+++.
T Consensus 73 ---------------------------------------------~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 107 (289)
T cd00200 73 ---------------------------------------------KTIRLWDLETGECVRTLTGHTSYVSSVAFSPDGRI 107 (289)
T ss_pred ---------------------------------------------CeEEEEEcCcccceEEEeccCCcEEEEEEcCCCCE
Confidence 46778888 43 44455544 57889999999876
Q ss_pred EEEEEecCCcccccccCCCceeEEEEeCCCceeeeeccCCCCCCCCCccCCccCCCceeeeecCCCceEEEEEeccCCCC
Q 004475 189 VLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDA 268 (751)
Q Consensus 189 i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~spdG~~~i~~~~~~~~~~~ 268 (751)
|+.... ...+.+|++.+++...... .....+..+.|+|+++. ++...
T Consensus 108 ~~~~~~-------------~~~i~~~~~~~~~~~~~~~------------~~~~~i~~~~~~~~~~~-l~~~~------- 154 (289)
T cd00200 108 LSSSSR-------------DKTIKVWDVETGKCLTTLR------------GHTDWVNSVAFSPDGTF-VASSS------- 154 (289)
T ss_pred EEEecC-------------CCeEEEEECCCcEEEEEec------------cCCCcEEEEEEcCcCCE-EEEEc-------
Confidence 665531 2468899998544332211 11123568899999765 44432
Q ss_pred ccccCcccceeeccCCCCCCCCceEeEeeceeEE-EEEecCCceEEEeeeecccceeEEEecCCCCCCcceeeeeccccc
Q 004475 269 NVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFS-VSWCDDSLALVNETWYKTSQTRTWLVCPGSKDVAPRVLFDRVFEN 347 (751)
Q Consensus 269 ~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~-~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~ 347 (751)
..+.++++++.. +.....+......+. +.|+|+++.|++... ...+.+++...+ ............
T Consensus 155 -----~~~~i~i~d~~~--~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~----~~~i~i~d~~~~--~~~~~~~~~~~~ 221 (289)
T cd00200 155 -----QDGTIKLWDLRT--GKCVATLTGHTGEVNSVAFSPDGEKLLSSSS----DGTIKLWDLSTG--KCLGTLRGHENG 221 (289)
T ss_pred -----CCCcEEEEEccc--cccceeEecCccccceEEECCCcCEEEEecC----CCcEEEEECCCC--ceecchhhcCCc
Confidence 235788888741 223333333444566 899999998887763 345677777653 222222111111
Q ss_pred ccCCCCCCCeeeCCCCCEEEEeeeecCCcceEEEEccCCCCCCCCCceeEEEecCCCceeEEeeccchhhhhceeeeecC
Q 004475 348 VYSDPGSPMMTRTSTGTNVIAKIKKENDEQIYILLNGRGFTPEGNIPFLDLFDINTGSKERIWESNREKYFETAVALVFG 427 (751)
Q Consensus 348 ~~~~~~~~~~~~spDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~ 427 (751)
... +.|+|++..++.... ...|+.|+..+++.......... .
T Consensus 222 i~~------~~~~~~~~~~~~~~~---------------------~~~i~i~~~~~~~~~~~~~~~~~-----------~ 263 (289)
T cd00200 222 VNS------VAFSPDGYLLASGSE---------------------DGTIRVWDLRTGECVQTLSGHTN-----------S 263 (289)
T ss_pred eEE------EEEcCCCcEEEEEcC---------------------CCcEEEEEcCCceeEEEccccCC-----------c
Confidence 222 779999776655441 23688889887655444332110 1
Q ss_pred CcceeeccCCCEEEEE
Q 004475 428 QGEEDINLNQLKILTS 443 (751)
Q Consensus 428 ~~~~~~s~dg~~l~~~ 443 (751)
...+.|+++++.|+..
T Consensus 264 i~~~~~~~~~~~l~~~ 279 (289)
T cd00200 264 VTSLAWSPDGKRLASG 279 (289)
T ss_pred EEEEEECCCCCEEEEe
Confidence 1225788888766654
No 133
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.36 E-value=3.8e-10 Score=117.36 Aligned_cols=228 Identities=18% Similarity=0.206 Sum_probs=151.0
Q ss_pred cccceeecCCCCeEEEEEeecccccccCCceeEEEEEcCCCCeeeccCCCCccccceeeeeEEecCCcEEEEeecCCCCC
Q 004475 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRD 111 (751)
Q Consensus 32 ~~~~p~~SPDG~~iaf~~~~~~~~~~~~~~~~l~i~~~~~g~~~~lt~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~ 111 (751)
.+...+|+--|.||||-+ ...++|-|++-.+.....--.+.. ..+..++.||||++|+....+
T Consensus 309 ~I~t~~~N~tGDWiA~g~---------~klgQLlVweWqsEsYVlKQQgH~----~~i~~l~YSpDgq~iaTG~eD---- 371 (893)
T KOG0291|consen 309 KILTVSFNSTGDWIAFGC---------SKLGQLLVWEWQSESYVLKQQGHS----DRITSLAYSPDGQLIATGAED---- 371 (893)
T ss_pred eeeEEEecccCCEEEEcC---------CccceEEEEEeeccceeeeccccc----cceeeEEECCCCcEEEeccCC----
Confidence 678899999999999954 345677777765433211111111 136788999999999987543
Q ss_pred CCCCCCCCCCCceeeccccccccchhhhhccCCccchhhhhhheeeEEEEEcC-CC-CceecCCC-ceEEeeeeCCCCce
Q 004475 112 PPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DG-TAKDFGTP-AVYTAVEPSPDQKY 188 (751)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~G-~~~~lt~~-~~~~~~~~SpDG~~ 188 (751)
+.+.++|. +| -....+++ ..+..+.|+.+|+.
T Consensus 372 ---------------------------------------------gKVKvWn~~SgfC~vTFteHts~Vt~v~f~~~g~~ 406 (893)
T KOG0291|consen 372 ---------------------------------------------GKVKVWNTQSGFCFVTFTEHTSGVTAVQFTARGNV 406 (893)
T ss_pred ---------------------------------------------CcEEEEeccCceEEEEeccCCCceEEEEEEecCCE
Confidence 46777787 77 66778888 88999999999999
Q ss_pred EEEEEecCCcccccccCCCceeEEEEeCCCc-eeeeeccCCCCCCCCCccCCccCCCceeeeecCCCceEEEEEeccCCC
Q 004475 189 VLITSMHRPYSYKVPCARFSQKVQVWTTDGK-LVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGD 267 (751)
Q Consensus 189 i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~spdG~~~i~~~~~~~~~~ 267 (751)
|+-++.+. .+..||+... ..+.++.. .+.+..+++-.|.|. |+++.+.
T Consensus 407 llssSLDG-------------tVRAwDlkRYrNfRTft~P------------~p~QfscvavD~sGe--lV~AG~~---- 455 (893)
T KOG0291|consen 407 LLSSSLDG-------------TVRAWDLKRYRNFRTFTSP------------EPIQFSCVAVDPSGE--LVCAGAQ---- 455 (893)
T ss_pred EEEeecCC-------------eEEeeeecccceeeeecCC------------CceeeeEEEEcCCCC--EEEeecc----
Confidence 98877654 4667887533 23332211 123344677777787 5554422
Q ss_pred CccccCcccceeeccCCCCCCCCceEeEeeceeEE-EEEecCCceEEEeeeecccceeEEEecCCCCCCcceeeeecccc
Q 004475 268 ANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFS-VSWCDDSLALVNETWYKTSQTRTWLVCPGSKDVAPRVLFDRVFE 346 (751)
Q Consensus 268 ~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~-~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~ 346 (751)
+.-.||+|+++ +|.....|..+++.+. ++|+|+|..|+-.++..+ -++|-+=...++.++..+. .
T Consensus 456 ------d~F~IfvWS~q--TGqllDiLsGHEgPVs~l~f~~~~~~LaS~SWDkT--VRiW~if~s~~~vEtl~i~----s 521 (893)
T KOG0291|consen 456 ------DSFEIFVWSVQ--TGQLLDILSGHEGPVSGLSFSPDGSLLASGSWDKT--VRIWDIFSSSGTVETLEIR----S 521 (893)
T ss_pred ------ceEEEEEEEee--cCeeeehhcCCCCcceeeEEccccCeEEeccccce--EEEEEeeccCceeeeEeec----c
Confidence 22489999986 3445566677888888 999999999988776543 3666543333212222222 2
Q ss_pred cccCCCCCCCeeeCCCCCEEEEeeee
Q 004475 347 NVYSDPGSPMMTRTSTGTNVIAKIKK 372 (751)
Q Consensus 347 ~~~~~~~~~~~~~spDG~~l~~~~~~ 372 (751)
++.. ++|+|||+.|+....+
T Consensus 522 dvl~------vsfrPdG~elaVaTld 541 (893)
T KOG0291|consen 522 DVLA------VSFRPDGKELAVATLD 541 (893)
T ss_pred ceeE------EEEcCCCCeEEEEEec
Confidence 2222 8899999999999854
No 134
>KOG4627 consensus Kynurenine formamidase [Amino acid transport and metabolism]
Probab=99.35 E-value=1.1e-11 Score=108.71 Aligned_cols=200 Identities=16% Similarity=0.151 Sum_probs=133.3
Q ss_pred ceEEEEEEcCCCceEEEEEEcCCCCCCCCCCCccEEEEEcCCCCcCcccCCcccCCCCccCCCCchHHHHHHhCCeEEEE
Q 004475 480 QKEMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLA 559 (751)
Q Consensus 480 ~~e~i~~~~~~~~~i~~~~~~P~~~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~v~~ 559 (751)
..|.+.+-. +| .-...+|.|.. ..|+.||+|||.|..++-...+ .....+..+||+|+.
T Consensus 44 r~e~l~Yg~-~g-~q~VDIwg~~~-------~~klfIfIHGGYW~~g~rk~cl------------siv~~a~~~gY~vas 102 (270)
T KOG4627|consen 44 RVEHLRYGE-GG-RQLVDIWGSTN-------QAKLFIFIHGGYWQEGDRKMCL------------SIVGPAVRRGYRVAS 102 (270)
T ss_pred chhccccCC-CC-ceEEEEecCCC-------CccEEEEEecchhhcCchhccc------------chhhhhhhcCeEEEE
Confidence 445555542 22 45667777754 1589999999988665433222 223455789999998
Q ss_pred cCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhC-CCceeEEEEccCCCCC
Q 004475 560 GPSIPIIGEGDKLPNDRFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHA-PHLFCCGIARSGSYNK 638 (751)
Q Consensus 560 ~~~~~~~g~g~~~~~~~~~~~~~~d~~~~v~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~-p~~~~~~v~~~~~~d~ 638 (751)
..| +-. ......+..+.++...++|+.+... ..+++.+.|||.|+++|+.+.++. ..++.++++++|+++.
T Consensus 103 vgY------~l~-~q~htL~qt~~~~~~gv~filk~~~-n~k~l~~gGHSaGAHLa~qav~R~r~prI~gl~l~~GvY~l 174 (270)
T KOG4627|consen 103 VGY------NLC-PQVHTLEQTMTQFTHGVNFILKYTE-NTKVLTFGGHSAGAHLAAQAVMRQRSPRIWGLILLCGVYDL 174 (270)
T ss_pred ecc------CcC-cccccHHHHHHHHHHHHHHHHHhcc-cceeEEEcccchHHHHHHHHHHHhcCchHHHHHHHhhHhhH
Confidence 444 222 2233567889999999999988643 346799999999999999998764 3478999999999873
Q ss_pred CC---CccCcccccccchhhHHHHHhcCc-ccccCCCCCCEEEEEcCCCCCCCCChHHHHHHHHHHHhCCCcEEEEEeCC
Q 004475 639 TL---TPFGFQTEFRTLWEATNVYIEMSP-ITHANKIKKPILIIHGEVDDKVGLFPMQAERFFDALKGHGALSRLVLLPF 714 (751)
Q Consensus 639 ~~---~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~P~li~~G~~D~~vp~~~~~~~~~~~~l~~~~~~~~~~~~~~ 714 (751)
.- ...+ ...+ -..+.....|+ +...+.++.|+|++.+++|.--- +++.+.+...+.++ .+..|++
T Consensus 175 ~EL~~te~g--~dlg---Lt~~~ae~~Scdl~~~~~v~~~ilVv~~~~espkl--ieQnrdf~~q~~~a----~~~~f~n 243 (270)
T KOG4627|consen 175 RELSNTESG--NDLG---LTERNAESVSCDLWEYTDVTVWILVVAAEHESPKL--IEQNRDFADQLRKA----SFTLFKN 243 (270)
T ss_pred HHHhCCccc--cccC---cccchhhhcCccHHHhcCceeeeeEeeecccCcHH--HHhhhhHHHHhhhc----ceeecCC
Confidence 21 1111 0000 00011111111 22356688999999999998765 88999999888754 7889999
Q ss_pred CCCcC
Q 004475 715 EHHVY 719 (751)
Q Consensus 715 ~~H~~ 719 (751)
.+|.-
T Consensus 244 ~~hy~ 248 (270)
T KOG4627|consen 244 YDHYD 248 (270)
T ss_pred cchhh
Confidence 88963
No 135
>KOG4409 consensus Predicted hydrolase/acyltransferase (alpha/beta hydrolase superfamily) [General function prediction only]
Probab=99.35 E-value=1.7e-11 Score=118.18 Aligned_cols=200 Identities=14% Similarity=0.024 Sum_probs=121.9
Q ss_pred ccEEEEEcCCCCcCcccCCcccCCCCccCCCCchHHHHHHhCCeEEEEcCCCCCCCCCCCCCCchh--HHHHHHHHHHHH
Q 004475 512 LPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGPSIPIIGEGDKLPNDRF--VEQLVSSAEAAV 589 (751)
Q Consensus 512 ~P~vv~~HGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~v~~~~~~~~~g~g~~~~~~~~--~~~~~~d~~~~v 589 (751)
...+|++||.|-+.+ .| ......|+. .+.|.+ +|..|+|.+..+.-. .+...+.+.+.+
T Consensus 90 ~~plVliHGyGAg~g-----------~f----~~Nf~~La~-~~~vya---iDllG~G~SSRP~F~~d~~~~e~~fvesi 150 (365)
T KOG4409|consen 90 KTPLVLIHGYGAGLG-----------LF----FRNFDDLAK-IRNVYA---IDLLGFGRSSRPKFSIDPTTAEKEFVESI 150 (365)
T ss_pred CCcEEEEeccchhHH-----------HH----HHhhhhhhh-cCceEE---ecccCCCCCCCCCCCCCcccchHHHHHHH
Confidence 466889999752110 01 122233344 888988 677788877543211 122233556666
Q ss_pred HHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEccCCCCCC---CCccC------cc----------ccc-
Q 004475 590 EEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGSYNKT---LTPFG------FQ----------TEF- 649 (751)
Q Consensus 590 ~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~~d~~---~~~~~------~~----------~~~- 649 (751)
+..+..-. -.|..|+|||+||++|..+|.++|++++.+++.+|.--.. ..+.. +. +..
T Consensus 151 E~WR~~~~--L~KmilvGHSfGGYLaa~YAlKyPerV~kLiLvsP~Gf~~~~~~~~~~~~~~~~w~~~~~~~~~~~nPl~ 228 (365)
T KOG4409|consen 151 EQWRKKMG--LEKMILVGHSFGGYLAAKYALKYPERVEKLILVSPWGFPEKPDSEPEFTKPPPEWYKALFLVATNFNPLA 228 (365)
T ss_pred HHHHHHcC--CcceeEeeccchHHHHHHHHHhChHhhceEEEecccccccCCCcchhhcCCChHHHhhhhhhhhcCCHHH
Confidence 55554433 3589999999999999999999999999999999852111 00000 00 000
Q ss_pred ----ccchh-------hHHHH---------------------------------------HhcCcccccCCCC--CCEEE
Q 004475 650 ----RTLWE-------ATNVY---------------------------------------IEMSPITHANKIK--KPILI 677 (751)
Q Consensus 650 ----~~~~~-------~~~~~---------------------------------------~~~~~~~~~~~~~--~P~li 677 (751)
.-+|. .++.+ +...-++.+..++ +|+++
T Consensus 229 ~LR~~Gp~Gp~Lv~~~~~d~~~k~~~~~~ed~l~~YiY~~n~~~psgE~~fk~l~~~~g~Ar~Pm~~r~~~l~~~~pv~f 308 (365)
T KOG4409|consen 229 LLRLMGPLGPKLVSRLRPDRFRKFPSLIEEDFLHEYIYHCNAQNPSGETAFKNLFEPGGWARRPMIQRLRELKKDVPVTF 308 (365)
T ss_pred HHHhccccchHHHhhhhHHHHHhccccchhHHHHHHHHHhcCCCCcHHHHHHHHHhccchhhhhHHHHHHhhccCCCEEE
Confidence 00000 00000 0111122233344 99999
Q ss_pred EEcCCCCCCCCChHHHHHHHHHHHhCCCcEEEEEeCCCCCcCCccccHHHHHHHHHHHHHH
Q 004475 678 IHGEVDDKVGLFPMQAERFFDALKGHGALSRLVLLPFEHHVYAARENVMHVIWETDRWLQK 738 (751)
Q Consensus 678 ~~G~~D~~vp~~~~~~~~~~~~l~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~fl~~ 738 (751)
|+|++|..- ...+.++...+. ...++.+++|++||-.. .++.+.+.+.++.+++.
T Consensus 309 iyG~~dWmD---~~~g~~~~~~~~--~~~~~~~~v~~aGHhvy-lDnp~~Fn~~v~~~~~~ 363 (365)
T KOG4409|consen 309 IYGDRDWMD---KNAGLEVTKSLM--KEYVEIIIVPGAGHHVY-LDNPEFFNQIVLEECDK 363 (365)
T ss_pred EecCccccc---chhHHHHHHHhh--cccceEEEecCCCceee-cCCHHHHHHHHHHHHhc
Confidence 999999864 566666666653 34689999999999876 67788888888888764
No 136
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.35 E-value=2.7e-10 Score=103.77 Aligned_cols=271 Identities=13% Similarity=0.191 Sum_probs=157.9
Q ss_pred cccceeecCCCCeEEEEEeecccccccCCceeEEEEEcCCCCeeeccCCCCccccceeeeeEEecCCcEEEEeecCCCCC
Q 004475 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRD 111 (751)
Q Consensus 32 ~~~~p~~SPDG~~iaf~~~~~~~~~~~~~~~~l~i~~~~~g~~~~lt~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~ 111 (751)
.+.+.+|+.||.++|--+- +....+|.++ .. +.+...........+..++|+|-..-++++....
T Consensus 22 ~v~Sv~wn~~g~~lasgs~--------dktv~v~n~e--~~--r~~~~~~~~gh~~svdql~w~~~~~d~~atas~d--- 86 (313)
T KOG1407|consen 22 KVHSVAWNCDGTKLASGSF--------DKTVSVWNLE--RD--RFRKELVYRGHTDSVDQLCWDPKHPDLFATASGD--- 86 (313)
T ss_pred cceEEEEcccCceeeeccc--------CCceEEEEec--ch--hhhhhhcccCCCcchhhheeCCCCCcceEEecCC---
Confidence 5789999999999998542 4455666555 33 3333333322233567889998776666663321
Q ss_pred CCCCCCCCCCCceeeccccccccchhhhhccCCccchhhhhhheeeEEEEEcC-CCCce-ecCCCceEEeeeeCCCCceE
Q 004475 112 PPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DGTAK-DFGTPAVYTAVEPSPDQKYV 189 (751)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~G~~~-~lt~~~~~~~~~~SpDG~~i 189 (751)
..+.++|. .|+.. ++.....-..+.|||||+++
T Consensus 87 ---------------------------------------------k~ir~wd~r~~k~~~~i~~~~eni~i~wsp~g~~~ 121 (313)
T KOG1407|consen 87 ---------------------------------------------KTIRIWDIRSGKCTARIETKGENINITWSPDGEYI 121 (313)
T ss_pred ---------------------------------------------ceEEEEEeccCcEEEEeeccCcceEEEEcCCCCEE
Confidence 35677777 66443 34333666689999999999
Q ss_pred EEEEecCCcccccccCCCceeEEEEeCCCceeeeeccCCCCCCCCCccCCccCCCceeeeecCCCceEEEEEeccCCCCc
Q 004475 190 LITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDAN 269 (751)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~spdG~~~i~~~~~~~~~~~~ 269 (751)
++...+. .|-.+|..+-++..- .+.. ..+.+++|+-++. ++|+..
T Consensus 122 ~~~~kdD-------------~it~id~r~~~~~~~--~~~~-----------~e~ne~~w~~~nd--~Fflt~------- 166 (313)
T KOG1407|consen 122 AVGNKDD-------------RITFIDARTYKIVNE--EQFK-----------FEVNEISWNNSND--LFFLTN------- 166 (313)
T ss_pred EEecCcc-------------cEEEEEecccceeeh--hccc-----------ceeeeeeecCCCC--EEEEec-------
Confidence 9875442 455666654433211 1111 1133678984444 455431
Q ss_pred cccCcccceeeccCCCCCCCCceEeEeeceeEE-EEEecCCceEEEeeeecccceeEEEecCCCCCCcceeeeecccccc
Q 004475 270 VEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFS-VSWCDDSLALVNETWYKTSQTRTWLVCPGSKDVAPRVLFDRVFENV 348 (751)
Q Consensus 270 ~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~-~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~ 348 (751)
.-+.+-++.-.. =+....|..++..+- +.|+|+|++++.++.. ..-.|| |++.- -=.+.++..... +
T Consensus 167 ----GlG~v~ILsyps--Lkpv~si~AH~snCicI~f~p~GryfA~GsAD--AlvSLW--D~~EL-iC~R~isRldwp-V 234 (313)
T KOG1407|consen 167 ----GLGCVEILSYPS--LKPVQSIKAHPSNCICIEFDPDGRYFATGSAD--ALVSLW--DVDEL-ICERCISRLDWP-V 234 (313)
T ss_pred ----CCceEEEEeccc--cccccccccCCcceEEEEECCCCceEeecccc--ceeecc--ChhHh-hhheeeccccCc-e
Confidence 224455544321 123344556666666 9999999999987632 112344 44331 011223332222 2
Q ss_pred cCCCCCCCeeeCCCCCEEEEeeeecCCcceEEEEccCCCCCCCCCceeEEEecCCCceeEEeeccchhhhhceeeeecCC
Q 004475 349 YSDPGSPMMTRTSTGTNVIAKIKKENDEQIYILLNGRGFTPEGNIPFLDLFDINTGSKERIWESNREKYFETAVALVFGQ 428 (751)
Q Consensus 349 ~~~~~~~~~~~spDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~~ 428 (751)
.. ++||.||++|+..+.+. .|-.-+++||.. +|..+-. +.+
T Consensus 235 RT------lSFS~dg~~lASaSEDh---------------------~IDIA~vetGd~--~~eI~~~----~~t------ 275 (313)
T KOG1407|consen 235 RT------LSFSHDGRMLASASEDH---------------------FIDIAEVETGDR--VWEIPCE----GPT------ 275 (313)
T ss_pred EE------EEeccCcceeeccCccc---------------------eEEeEecccCCe--EEEeecc----CCc------
Confidence 22 88999999999988542 566667888853 4443321 111
Q ss_pred cceeeccCCCEEEEEEecCC
Q 004475 429 GEEDINLNQLKILTSKESKT 448 (751)
Q Consensus 429 ~~~~~s~dg~~l~~~~~~~~ 448 (751)
..++|.|....|+|+.....
T Consensus 276 ~tVAWHPk~~LLAyA~ddk~ 295 (313)
T KOG1407|consen 276 FTVAWHPKRPLLAYACDDKD 295 (313)
T ss_pred eeEEecCCCceeeEEecCCC
Confidence 22689999999999876554
No 137
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=99.35 E-value=4.1e-10 Score=103.72 Aligned_cols=258 Identities=16% Similarity=0.086 Sum_probs=154.2
Q ss_pred CcceeEEeecCCCCC-CCC-cccccCCCCcccccceeecCCCCeEEEEEeecccccccCCceeEEEEEcCCCCeeeccCC
Q 004475 3 FFTGIGIHRLLPDDS-LGP-EKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFES 80 (751)
Q Consensus 3 ~~~~~~~~~~~~~~~-~g~-~~~l~~~~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~~~~~l~i~~~~~g~~~~lt~~ 80 (751)
....|.+|+|..|+. -|. .+.+++ ....+.....|+||++..-. .....|.++|+++|+.++..-+
T Consensus 36 rDk~ii~W~L~~dd~~~G~~~r~~~G--HsH~v~dv~~s~dg~~alS~----------swD~~lrlWDl~~g~~t~~f~G 103 (315)
T KOG0279|consen 36 RDKTIIVWKLTSDDIKYGVPVRRLTG--HSHFVSDVVLSSDGNFALSA----------SWDGTLRLWDLATGESTRRFVG 103 (315)
T ss_pred cceEEEEEEeccCccccCceeeeeec--cceEecceEEccCCceEEec----------cccceEEEEEecCCcEEEEEEe
Confidence 345677888877432 232 334553 23368899999999776554 3347888889999987776655
Q ss_pred CCccccceeeeeEEecCCcEEEEeecCCCCCCCCCCCCCCCCceeeccccccccchhhhhccCCccchhhhhhheeeEEE
Q 004475 81 PDICLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLV 160 (751)
Q Consensus 81 ~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 160 (751)
... .+..+++|||.+.|+-.+.+ ..|-
T Consensus 104 H~~----dVlsva~s~dn~qivSGSrD-------------------------------------------------kTik 130 (315)
T KOG0279|consen 104 HTK----DVLSVAFSTDNRQIVSGSRD-------------------------------------------------KTIK 130 (315)
T ss_pred cCC----ceEEEEecCCCceeecCCCc-------------------------------------------------ceee
Confidence 543 36789999999999876543 3566
Q ss_pred EEcCCC-CceecCCC---ceEEeeeeCCCCceEEEEEecCCcccccccCCCceeEEEEeCCCceeeeeccCCCCCCCCCc
Q 004475 161 LGSLDG-TAKDFGTP---AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVC 236 (751)
Q Consensus 161 ~~~~~G-~~~~lt~~---~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~ 236 (751)
+++.-| ..-.+.+. +.+..++|||...-.++.+.. +...+-+||+++-+.+.-
T Consensus 131 lwnt~g~ck~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s-----------~DktvKvWnl~~~~l~~~------------ 187 (315)
T KOG0279|consen 131 LWNTLGVCKYTIHEDSHREWVSCVRFSPNESNPIIVSAS-----------WDKTVKVWNLRNCQLRTT------------ 187 (315)
T ss_pred eeeecccEEEEEecCCCcCcEEEEEEcCCCCCcEEEEcc-----------CCceEEEEccCCcchhhc------------
Confidence 677734 22233322 568899999997443333322 244678999998766532
Q ss_pred cCCccCCCceeeeecCCCceEEEEEeccCCCCccccCcccceeeccCCCCCCCCceEeEeeceeEE-EEEecCCceEEEe
Q 004475 237 YNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFS-VSWCDDSLALVNE 315 (751)
Q Consensus 237 ~~~~~~~~~~~~~spdG~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~-~~~spdg~~l~~~ 315 (751)
+.....++..+++||||.. .+... ..++++++|++. +..... ......+. ..|||+--+|+..
T Consensus 188 ~~gh~~~v~t~~vSpDGsl-casGg------------kdg~~~LwdL~~--~k~lys-l~a~~~v~sl~fspnrywL~~a 251 (315)
T KOG0279|consen 188 FIGHSGYVNTVTVSPDGSL-CASGG------------KDGEAMLWDLNE--GKNLYS-LEAFDIVNSLCFSPNRYWLCAA 251 (315)
T ss_pred cccccccEEEEEECCCCCE-EecCC------------CCceEEEEEccC--CceeEe-ccCCCeEeeEEecCCceeEeec
Confidence 2223345668999999985 33311 236899999962 222111 12233445 8999988888765
Q ss_pred eeecccceeEEEecCCCCCCcceeeee-cccc-cccCCCCCCCeeeCCCCCEEEEee
Q 004475 316 TWYKTSQTRTWLVCPGSKDVAPRVLFD-RVFE-NVYSDPGSPMMTRTSTGTNVIAKI 370 (751)
Q Consensus 316 ~~~~~~~~~l~~~~~~~~~~~~~~l~~-~~~~-~~~~~~~~~~~~~spDG~~l~~~~ 370 (751)
.. ..|-+.+++++ .....|.. .... .-...+.--.++||+||..|+...
T Consensus 252 t~-----~sIkIwdl~~~-~~v~~l~~d~~g~s~~~~~~~clslaws~dG~tLf~g~ 302 (315)
T KOG0279|consen 252 TA-----TSIKIWDLESK-AVVEELKLDGIGPSSKAGDPICLSLAWSADGQTLFAGY 302 (315)
T ss_pred cC-----CceEEEeccch-hhhhhccccccccccccCCcEEEEEEEcCCCcEEEeee
Confidence 52 12555566664 11111111 1000 000000111288999999987766
No 138
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=99.34 E-value=1.1e-09 Score=117.50 Aligned_cols=319 Identities=12% Similarity=0.068 Sum_probs=179.8
Q ss_pred CCCCeEEEEEeecccccccCCceeEEEEEcC--CCCe-eeccCCCCccc---cceeeeeEEecCCcEEEEeecCCCCCCC
Q 004475 40 PDGKRIAFSVRVDEEDNVSSCKLRVWIADAE--TGEA-KPLFESPDICL---NAVFGSFVWVNNSTLLIFTIPSSRRDPP 113 (751)
Q Consensus 40 PDG~~iaf~~~~~~~~~~~~~~~~l~i~~~~--~g~~-~~lt~~~~~~~---~~~~~~~~wspDg~~l~~~~~~~~~~~~ 113 (751)
..|.+.+|....+ .....-+|+.... .|.. +.|.+.....- ...+..+.+||||++|+|+...+..+
T Consensus 76 ~~g~~~y~~~~~~-----~~~~~~~~r~~~~~~~~~~~evllD~n~l~~~~~~~~~~~~~~Spdg~~la~~~s~~G~e-- 148 (414)
T PF02897_consen 76 RRGGYYYYSRNQG-----GKNYPVLYRRKTDEEDGPEEEVLLDPNELAKDGGYVSLGGFSVSPDGKRLAYSLSDGGSE-- 148 (414)
T ss_dssp EETTEEEEEEE-S-----S-SS-EEEEEETTS-TS-C-EEEEEGGGGSTTSS-EEEEEEEETTTSSEEEEEEEETTSS--
T ss_pred EECCeEEEEEEcC-----CCceEEEEEEecccCCCCceEEEEcchHhhccCceEEeeeeeECCCCCEEEEEecCCCCc--
Confidence 4566887766421 1334566666665 3443 44433221100 11234678999999999995543222
Q ss_pred CCCCCCCCCceeeccccccccchhhhhccCCccchhhhhhheeeEEEEEcC-CCCceecCCC---ceEEeeeeCCCCceE
Q 004475 114 KKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DGTAKDFGTP---AVYTAVEPSPDQKYV 189 (751)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~G~~~~lt~~---~~~~~~~~SpDG~~i 189 (751)
...|+++|+ +|+. +.+. .....+.|++||+.|
T Consensus 149 ------------------------------------------~~~l~v~Dl~tg~~--l~d~i~~~~~~~~~W~~d~~~~ 184 (414)
T PF02897_consen 149 ------------------------------------------WYTLRVFDLETGKF--LPDGIENPKFSSVSWSDDGKGF 184 (414)
T ss_dssp ------------------------------------------EEEEEEEETTTTEE--EEEEEEEEESEEEEECTTSSEE
T ss_pred ------------------------------------------eEEEEEEECCCCcC--cCCcccccccceEEEeCCCCEE
Confidence 168999999 7732 2222 122249999999999
Q ss_pred EEEEecCCcccccccCCCceeEEEEeCCCceee--eeccCCCCCCCCCccCCccCCCceeeeecCCCceEEEEEeccCCC
Q 004475 190 LITSMHRPYSYKVPCARFSQKVQVWTTDGKLVR--ELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGD 267 (751)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~--~l~~~~~~~~~~~~~~~~~~~~~~~~~spdG~~~i~~~~~~~~~~ 267 (751)
+|+..+....-. ......++|++.+.+.... .|...+.... ....+..|+||++ |++....
T Consensus 185 ~y~~~~~~~~~~--~~~~~~~v~~~~~gt~~~~d~lvfe~~~~~~----------~~~~~~~s~d~~~-l~i~~~~---- 247 (414)
T PF02897_consen 185 FYTRFDEDQRTS--DSGYPRQVYRHKLGTPQSEDELVFEEPDEPF----------WFVSVSRSKDGRY-LFISSSS---- 247 (414)
T ss_dssp EEEECSTTTSS---CCGCCEEEEEEETTS-GGG-EEEEC-TTCTT----------SEEEEEE-TTSSE-EEEEEES----
T ss_pred EEEEeCcccccc--cCCCCcEEEEEECCCChHhCeeEEeecCCCc----------EEEEEEecCcccE-EEEEEEc----
Confidence 999876421100 1223578999999876544 4433332211 0226789999998 4443311
Q ss_pred CccccCcccceeeccCCCC--CCCCceEeEee-ceeEE-EEEecCCceEEEeeeecccceeEEEecCCCCCC-cce-eee
Q 004475 268 ANVEVSPRDIIYTQPAEPA--EGEKPEILHKL-DLRFS-VSWCDDSLALVNETWYKTSQTRTWLVCPGSKDV-APR-VLF 341 (751)
Q Consensus 268 ~~~~~~~~~~l~~~~~~~~--~~~~~~~l~~~-~~~~~-~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~~-~~~-~l~ 341 (751)
.. ....+|++++... .....+.+... .+... +... |..+++.++.......|+.++++.... ... .+.
T Consensus 248 ---~~-~~s~v~~~d~~~~~~~~~~~~~l~~~~~~~~~~v~~~--~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~ 321 (414)
T PF02897_consen 248 ---GT-SESEVYLLDLDDGGSPDAKPKLLSPREDGVEYYVDHH--GDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLI 321 (414)
T ss_dssp ---SS-SEEEEEEEECCCTTTSS-SEEEEEESSSS-EEEEEEE--TTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE
T ss_pred ---cc-cCCeEEEEeccccCCCcCCcEEEeCCCCceEEEEEcc--CCEEEEeeCCCCCCcEEEEecccccccccceeEEc
Confidence 11 1368999998621 12355666553 33333 3333 777888887666678999999988621 122 333
Q ss_pred ecccccccCCCCCCCeeeCCCCCEEEEeeeecCCcceEEEEccCCCCCCCCCceeEEEecC-CCceeEEeeccchhhhhc
Q 004475 342 DRVFENVYSDPGSPMMTRTSTGTNVIAKIKKENDEQIYILLNGRGFTPEGNIPFLDLFDIN-TGSKERIWESNREKYFET 420 (751)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~spDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~-~g~~~~l~~~~~~~~~~~ 420 (751)
........ -.++..+.+|++.... ....+|.++++. +.....+...... .
T Consensus 322 ~~~~~~~l-------~~~~~~~~~Lvl~~~~------------------~~~~~l~v~~~~~~~~~~~~~~p~~g----~ 372 (414)
T PF02897_consen 322 PEDEDVSL-------EDVSLFKDYLVLSYRE------------------NGSSRLRVYDLDDGKESREIPLPEAG----S 372 (414)
T ss_dssp --SSSEEE-------EEEEEETTEEEEEEEE------------------TTEEEEEEEETT-TEEEEEEESSSSS----E
T ss_pred CCCCceeE-------EEEEEECCEEEEEEEE------------------CCccEEEEEECCCCcEEeeecCCcce----E
Confidence 32211100 2355666677766633 245589999998 4444433322211 1
Q ss_pred eeeeecCCcceeeccCCCEEEEEEecCCCCCeEEEEEcCCCceeEeec
Q 004475 421 AVALVFGQGEEDINLNQLKILTSKESKTEITQYHILSWPLKKSSQITN 468 (751)
Q Consensus 421 ~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~l~~~~~~~g~~~~lt~ 468 (751)
+.. .+..++++.+.|..++...|+.+|.+|+.+++.+.+..
T Consensus 373 v~~-------~~~~~~~~~~~~~~ss~~~P~~~y~~d~~t~~~~~~k~ 413 (414)
T PF02897_consen 373 VSG-------VSGDFDSDELRFSYSSFTTPPTVYRYDLATGELTLLKQ 413 (414)
T ss_dssp EEE-------EES-TT-SEEEEEEEETTEEEEEEEEETTTTCEEEEEE
T ss_pred Eec-------cCCCCCCCEEEEEEeCCCCCCEEEEEECCCCCEEEEEe
Confidence 111 34567899999999999999999999999999888764
No 139
>COG2936 Predicted acyl esterases [General function prediction only]
Probab=99.34 E-value=3.4e-11 Score=125.63 Aligned_cols=241 Identities=21% Similarity=0.278 Sum_probs=155.3
Q ss_pred CCceEEEEEEcCCCceEEEEEEcCCCCCCCCCCCccEEEEEcCCCCcCcccCCcccCCCCccCCCCchHHHHHHhCCeEE
Q 004475 478 SLQKEMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAV 557 (751)
Q Consensus 478 ~~~~e~i~~~~~~~~~i~~~~~~P~~~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~v 557 (751)
.+....+.++..||+++.+.+|+|++ .+++|+++..+=.|+...+ + ..+ ...... .....|+.+||+|
T Consensus 16 ~~~~~~v~V~MRDGvrL~~dIy~Pa~-----~g~~Pvll~~~~~Py~k~~--~-~~~--~~~~~~--p~~~~~aa~GYav 83 (563)
T COG2936 16 GYIERDVMVPMRDGVRLAADIYRPAG-----AGPLPVLLSRTRLPYRKRN--G-TFG--PQLSAL--PQPAWFAAQGYAV 83 (563)
T ss_pred ceeeeeeeEEecCCeEEEEEEEccCC-----CCCCceeEEeecccccccc--c-cCc--chhhcc--cccceeecCceEE
Confidence 35566778888999999999999987 4679999999833322211 0 000 000000 0113678999999
Q ss_pred EEcCCCCCCCCCCCCCCchh-HHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEccCCC
Q 004475 558 LAGPSIPIIGEGDKLPNDRF-VEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGSY 636 (751)
Q Consensus 558 ~~~~~~~~~g~g~~~~~~~~-~~~~~~d~~~~v~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~~ 636 (751)
+. .+.+|.+.+++.... ..+..+|..+.|+||.++++.+ .+|+++|.|++|+..+.+|+..|..+++++...+..
T Consensus 84 V~---qDvRG~~~SeG~~~~~~~~E~~Dg~D~I~Wia~QpWsN-G~Vgm~G~SY~g~tq~~~Aa~~pPaLkai~p~~~~~ 159 (563)
T COG2936 84 VN---QDVRGRGGSEGVFDPESSREAEDGYDTIEWLAKQPWSN-GNVGMLGLSYLGFTQLAAAALQPPALKAIAPTEGLV 159 (563)
T ss_pred EE---ecccccccCCcccceeccccccchhHHHHHHHhCCccC-CeeeeecccHHHHHHHHHHhcCCchheeeccccccc
Confidence 99 667787777654322 2257899999999999999876 699999999999999999999998999999988876
Q ss_pred CCCCCc--------------cC-----------ccc-----------------------ccccchhh---------HHHH
Q 004475 637 NKTLTP--------------FG-----------FQT-----------------------EFRTLWEA---------TNVY 659 (751)
Q Consensus 637 d~~~~~--------------~~-----------~~~-----------------------~~~~~~~~---------~~~~ 659 (751)
|..... |. ... ....+|.. .+.|
T Consensus 160 D~y~d~~~~~G~~~~~~~~~W~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~~~~~~hp~~ddfW 239 (563)
T COG2936 160 DRYRDDAFYGGGAELNFNLGWALTMLAPQPLTRIRPARLDRLAPLRVGAERWRDAPTELLEGEPYFLELWLEHPLRDDFW 239 (563)
T ss_pred cccccccccCcchhhhhhHHHHhhhcccCcccccccccccccchhhhhhccccccccchhccCcccchhhhcCCCccchh
Confidence 511000 00 000 00011110 0123
Q ss_pred HhcCcccccCCCCCCEEEEEcCCCCCCCCChHHHHHHHHHHHhCCCcEEEEEeCCCCCcCCcccc-----HHHHHHHHHH
Q 004475 660 IEMSPITHANKIKKPILIIHGEVDDKVGLFPMQAERFFDALKGHGALSRLVLLPFEHHVYAAREN-----VMHVIWETDR 734 (751)
Q Consensus 660 ~~~~~~~~~~~~~~P~li~~G~~D~~vp~~~~~~~~~~~~l~~~~~~~~~~~~~~~~H~~~~~~~-----~~~~~~~~~~ 734 (751)
...+......++++|+|++.|=.|.. ...+.+++..+... +..+++-|- .|....... ....++...+
T Consensus 240 ~~~~~~~d~~~i~vP~L~i~gW~D~~----l~~~~~~~~~~~~r--~~~lvvgPw-~H~~~~~~~~~~~y~~~al~~~~~ 312 (563)
T COG2936 240 RRGDRVADLSKIKVPALVIGGWSDGY----LHTAIKLFAFLRSR--PVKLVVGPW-THGGPEWEGPGKDYGATALSWQDD 312 (563)
T ss_pred hccCcccccccCCCcEEEEccccccc----ccchHHHhhhcccC--CceeEEccc-ccCCCcccccccchhhhhhhhhHh
Confidence 33455556778999999999999975 34556677666653 345666665 365433222 2344455566
Q ss_pred HHHHHhc
Q 004475 735 WLQKYCL 741 (751)
Q Consensus 735 fl~~~l~ 741 (751)
||..++.
T Consensus 313 ~l~~~~~ 319 (563)
T COG2936 313 FLDAYLD 319 (563)
T ss_pred hhhHhhh
Confidence 6665554
No 140
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.32 E-value=8.1e-11 Score=110.47 Aligned_cols=138 Identities=23% Similarity=0.291 Sum_probs=95.3
Q ss_pred ceeecCCCCeEEEEEeecccccccCCceeEEEEEcCCCCeeeccCCCCccccceeeeeEEecCCcEEEEeecCCCCCCCC
Q 004475 35 FVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRDPPK 114 (751)
Q Consensus 35 ~p~~SPDG~~iaf~~~~~~~~~~~~~~~~l~i~~~~~g~~~~lt~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~ 114 (751)
.-.|||+|++||-.++ .+|.|.|..+=+..+|...-. -+..+.|+.|+.+|+......
T Consensus 13 ~c~fSp~g~yiAs~~~-----------yrlviRd~~tlq~~qlf~cld-----ki~yieW~ads~~ilC~~yk~------ 70 (447)
T KOG4497|consen 13 FCSFSPCGNYIASLSR-----------YRLVIRDSETLQLHQLFLCLD-----KIVYIEWKADSCHILCVAYKD------ 70 (447)
T ss_pred ceeECCCCCeeeeeee-----------eEEEEeccchhhHHHHHHHHH-----Hhhheeeeccceeeeeeeecc------
Confidence 5689999999999653 589999988877777743321 145679999999988774321
Q ss_pred CCCCCCCCceeeccccccccchhhhhccCCccchhhhhhheeeEEEEEcCCC-C-ceecCCC-ceEEeeeeCCCCceEEE
Q 004475 115 KTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSLDG-T-AKDFGTP-AVYTAVEPSPDQKYVLI 191 (751)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~G-~-~~~lt~~-~~~~~~~~SpDG~~i~~ 191 (751)
..+.++++.. + .-.+..+ .++...+|||||+.|+.
T Consensus 71 ------------------------------------------~~vqvwsl~Qpew~ckIdeg~agls~~~WSPdgrhiL~ 108 (447)
T KOG4497|consen 71 ------------------------------------------PKVQVWSLVQPEWYCKIDEGQAGLSSISWSPDGRHILL 108 (447)
T ss_pred ------------------------------------------ceEEEEEeecceeEEEeccCCCcceeeeECCCcceEee
Confidence 2344445533 1 1234444 77889999999999998
Q ss_pred EEecCCcccccccCCCceeEEEEeCCCceeeeeccCCCCCCCCCccCCccCCCceeeeecCCCceEEEEEe
Q 004475 192 TSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEA 262 (751)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~spdG~~~i~~~~~ 262 (751)
++. |...|-+|.+.+.+...+.. ...++..++|.|||++ .+.++.
T Consensus 109 tse------------F~lriTVWSL~t~~~~~~~~-------------pK~~~kg~~f~~dg~f-~ai~sR 153 (447)
T KOG4497|consen 109 TSE------------FDLRITVWSLNTQKGYLLPH-------------PKTNVKGYAFHPDGQF-CAILSR 153 (447)
T ss_pred eec------------ceeEEEEEEeccceeEEecc-------------cccCceeEEECCCCce-eeeeec
Confidence 753 35678889988775544321 1233457899999998 677663
No 141
>KOG4667 consensus Predicted esterase [Lipid transport and metabolism]
Probab=99.28 E-value=5.8e-11 Score=105.35 Aligned_cols=224 Identities=13% Similarity=0.120 Sum_probs=136.4
Q ss_pred ceEEEEEEcCCCceEEEEEEcCCCCCCCCCCCccEEEEEcCCCCcCcccCCcccCCCCccCCCCchHHHHHHhCCeEEEE
Q 004475 480 QKEMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLA 559 (751)
Q Consensus 480 ~~e~i~~~~~~~~~i~~~~~~P~~~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~v~~ 559 (751)
..+.+.++.+.+..+-+.+..-. ..-+||++||- .+ .-+ .-+....+..++..||.++.
T Consensus 9 ~~~~ivi~n~~ne~lvg~lh~tg--------s~e~vvlcHGf--rS---------~Kn--~~~~~~vA~~~e~~gis~fR 67 (269)
T KOG4667|consen 9 IAQKIVIPNSRNEKLVGLLHETG--------STEIVVLCHGF--RS---------HKN--AIIMKNVAKALEKEGISAFR 67 (269)
T ss_pred eeeEEEeccCCCchhhcceeccC--------CceEEEEeecc--cc---------ccc--hHHHHHHHHHHHhcCceEEE
Confidence 34556666666655555333221 24689999993 11 000 01112345577789999999
Q ss_pred cCCCCCCCCCCCCCCchh--HHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEccCCCC
Q 004475 560 GPSIPIIGEGDKLPNDRF--VEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGSYN 637 (751)
Q Consensus 560 ~~~~~~~g~g~~~~~~~~--~~~~~~d~~~~v~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~~d 637 (751)
+++.|.|++.....+ +...++|+..+++++.... ..=-+++|||-||.+++..+.++++ +.-+|-.+|-++
T Consensus 68 ---fDF~GnGeS~gsf~~Gn~~~eadDL~sV~q~~s~~n---r~v~vi~gHSkGg~Vvl~ya~K~~d-~~~viNcsGRyd 140 (269)
T KOG4667|consen 68 ---FDFSGNGESEGSFYYGNYNTEADDLHSVIQYFSNSN---RVVPVILGHSKGGDVVLLYASKYHD-IRNVINCSGRYD 140 (269)
T ss_pred ---EEecCCCCcCCccccCcccchHHHHHHHHHHhccCc---eEEEEEEeecCccHHHHHHHHhhcC-chheEEcccccc
Confidence 788888887553322 3455699999999997632 1224699999999999999999965 677777777665
Q ss_pred CCCCc--------------cCcc------cccccchhhHHHHHhcC-cc--cccC-CCCCCEEEEEcCCCCCCCCChHHH
Q 004475 638 KTLTP--------------FGFQ------TEFRTLWEATNVYIEMS-PI--THAN-KIKKPILIIHGEVDDKVGLFPMQA 693 (751)
Q Consensus 638 ~~~~~--------------~~~~------~~~~~~~~~~~~~~~~~-~~--~~~~-~~~~P~li~~G~~D~~vp~~~~~~ 693 (751)
....- -++. ......|.......... .. +.++ ..+||+|-+||..|.+|| .+.+
T Consensus 141 l~~~I~eRlg~~~l~~ike~Gfid~~~rkG~y~~rvt~eSlmdrLntd~h~aclkId~~C~VLTvhGs~D~IVP--ve~A 218 (269)
T KOG4667|consen 141 LKNGINERLGEDYLERIKEQGFIDVGPRKGKYGYRVTEESLMDRLNTDIHEACLKIDKQCRVLTVHGSEDEIVP--VEDA 218 (269)
T ss_pred hhcchhhhhcccHHHHHHhCCceecCcccCCcCceecHHHHHHHHhchhhhhhcCcCccCceEEEeccCCceee--chhH
Confidence 22100 0000 00111111111111110 00 0111 236999999999999999 9999
Q ss_pred HHHHHHHHhCCCcEEEEEeCCCCCcCCccccHHHHHHHHHHHHHHH
Q 004475 694 ERFFDALKGHGALSRLVLLPFEHHVYAARENVMHVIWETDRWLQKY 739 (751)
Q Consensus 694 ~~~~~~l~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~fl~~~ 739 (751)
.++++.+.. ..+.+++|+.|.+...+ .+.....+.|+.-.
T Consensus 219 kefAk~i~n----H~L~iIEgADHnyt~~q--~~l~~lgl~f~k~r 258 (269)
T KOG4667|consen 219 KEFAKIIPN----HKLEIIEGADHNYTGHQ--SQLVSLGLEFIKTR 258 (269)
T ss_pred HHHHHhccC----CceEEecCCCcCccchh--hhHhhhcceeEEee
Confidence 999988875 47999999999986433 23334444444433
No 142
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=99.28 E-value=2.7e-09 Score=98.39 Aligned_cols=274 Identities=11% Similarity=0.060 Sum_probs=167.8
Q ss_pred cccceeecCCCCeEEEEEeecccccccCCceeEEEEEcC-----CCCeeeccCCCCccccceeeeeEEecCCcEEEEeec
Q 004475 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAE-----TGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIP 106 (751)
Q Consensus 32 ~~~~p~~SPDG~~iaf~~~~~~~~~~~~~~~~l~i~~~~-----~g~~~~lt~~~~~~~~~~~~~~~wspDg~~l~~~~~ 106 (751)
++...+..+++..+++...+| ..+.++++. .|.+.+...+.++ .+..++-|+||++.+-.+.
T Consensus 17 ~Vt~la~~~~~~~~l~sasrD---------k~ii~W~L~~dd~~~G~~~r~~~GHsH----~v~dv~~s~dg~~alS~sw 83 (315)
T KOG0279|consen 17 WVTALAIKIKNSDILVSASRD---------KTIIVWKLTSDDIKYGVPVRRLTGHSH----FVSDVVLSSDGNFALSASW 83 (315)
T ss_pred eEEEEEeecCCCceEEEcccc---------eEEEEEEeccCccccCceeeeeeccce----EecceEEccCCceEEeccc
Confidence 677888888888888865432 344444433 3554444444433 4788999999997665543
Q ss_pred CCCCCCCCCCCCCCCCceeeccccccccchhhhhccCCccchhhhhhheeeEEEEEcC-CCCc-eecCCC-ceEEeeeeC
Q 004475 107 SSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DGTA-KDFGTP-AVYTAVEPS 183 (751)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~G~~-~~lt~~-~~~~~~~~S 183 (751)
+ ..+.++|+ +|+. +++-.+ .++.++++|
T Consensus 84 D-------------------------------------------------~~lrlWDl~~g~~t~~f~GH~~dVlsva~s 114 (315)
T KOG0279|consen 84 D-------------------------------------------------GTLRLWDLATGESTRRFVGHTKDVLSVAFS 114 (315)
T ss_pred c-------------------------------------------------ceEEEEEecCCcEEEEEEecCCceEEEEec
Confidence 2 46888899 6644 445444 788999999
Q ss_pred CCCceEEEEEecCCcccccccCCCceeEEEEeCCCceeeeeccCCCCCCCCCccCCccCCCceeeeecCCCceEEEEEec
Q 004475 184 PDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQ 263 (751)
Q Consensus 184 pDG~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~spdG~~~i~~~~~~ 263 (751)
||.++|+--+.++ .|-+|+.-+...-.+.... ++.-+..+.|+|+... .++++..
T Consensus 115 ~dn~qivSGSrDk-------------Tiklwnt~g~ck~t~~~~~-----------~~~WVscvrfsP~~~~-p~Ivs~s 169 (315)
T KOG0279|consen 115 TDNRQIVSGSRDK-------------TIKLWNTLGVCKYTIHEDS-----------HREWVSCVRFSPNESN-PIIVSAS 169 (315)
T ss_pred CCCceeecCCCcc-------------eeeeeeecccEEEEEecCC-----------CcCcEEEEEEcCCCCC-cEEEEcc
Confidence 9999998655443 5778988776544432221 1233568999999755 3333211
Q ss_pred cCCCCccccCcccceeeccCCCCCCC-CceEeEeeceeEE-EEEecCCceEEEeeeecccceeEEEecCCCCCCcceeee
Q 004475 264 DRGDANVEVSPRDIIYTQPAEPAEGE-KPEILHKLDLRFS-VSWCDDSLALVNETWYKTSQTRTWLVCPGSKDVAPRVLF 341 (751)
Q Consensus 264 ~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~l~~~~~~~~-~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~l~ 341 (751)
....+-+++++ +- .........+.+. +.+||||...++.. ...++++.|++.+ +.+.
T Consensus 170 ----------~DktvKvWnl~---~~~l~~~~~gh~~~v~t~~vSpDGslcasGg----kdg~~~LwdL~~~----k~ly 228 (315)
T KOG0279|consen 170 ----------WDKTVKVWNLR---NCQLRTTFIGHSGYVNTVTVSPDGSLCASGG----KDGEAMLWDLNEG----KNLY 228 (315)
T ss_pred ----------CCceEEEEccC---CcchhhccccccccEEEEEECCCCCEEecCC----CCceEEEEEccCC----ceeE
Confidence 34577888875 22 2333445566667 99999999877633 2346777777764 2232
Q ss_pred -ecccccccCCCCCCCeeeCCCCCEEEEeeeecCCcceEEEEccCCCCCCCCCceeEEEecCCCceeEEeeccchhhhhc
Q 004475 342 -DRVFENVYSDPGSPMMTRTSTGTNVIAKIKKENDEQIYILLNGRGFTPEGNIPFLDLFDINTGSKERIWESNREKYFET 420 (751)
Q Consensus 342 -~~~~~~~~~~~~~~~~~~spDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~ 420 (751)
......+.+ ++|||.--+|.... ...|..||++++....-...+.. +
T Consensus 229 sl~a~~~v~s------l~fspnrywL~~at----------------------~~sIkIwdl~~~~~v~~l~~d~~----g 276 (315)
T KOG0279|consen 229 SLEAFDIVNS------LCFSPNRYWLCAAT----------------------ATSIKIWDLESKAVVEELKLDGI----G 276 (315)
T ss_pred eccCCCeEee------EEecCCceeEeecc----------------------CCceEEEeccchhhhhhcccccc----c
Confidence 233333333 88999987776655 22588899988754322221110 0
Q ss_pred eeeeecCCc--ceeeccCCCEEEEEEe
Q 004475 421 AVALVFGQG--EEDINLNQLKILTSKE 445 (751)
Q Consensus 421 ~~~~~~~~~--~~~~s~dg~~l~~~~~ 445 (751)
...-..++. ..+||+||.+|+.-+.
T Consensus 277 ~s~~~~~~~clslaws~dG~tLf~g~t 303 (315)
T KOG0279|consen 277 PSSKAGDPICLSLAWSADGQTLFAGYT 303 (315)
T ss_pred cccccCCcEEEEEEEcCCCcEEEeeec
Confidence 100001111 2699999999887653
No 143
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.28 E-value=8.5e-09 Score=106.97 Aligned_cols=222 Identities=9% Similarity=0.028 Sum_probs=111.1
Q ss_pred ceEEeeeeCCCCceEEEEEecCCcccccccCCCceeEEEEeCCC-cee-eeeccCCCCCCCCCccCCccCCCceeeeecC
Q 004475 175 AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDG-KLV-RELCDLPPAEDIPVCYNSVREGMRSISWRAD 252 (751)
Q Consensus 175 ~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~-~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~spd 252 (751)
.....++++|||++|++.... ...+.+|+++. +.. +.+...++ ..+...+.++||
T Consensus 80 ~~p~~i~~~~~g~~l~v~~~~------------~~~v~v~~~~~~g~~~~~~~~~~~-----------~~~~~~~~~~p~ 136 (330)
T PRK11028 80 GSPTHISTDHQGRFLFSASYN------------ANCVSVSPLDKDGIPVAPIQIIEG-----------LEGCHSANIDPD 136 (330)
T ss_pred CCceEEEECCCCCEEEEEEcC------------CCeEEEEEECCCCCCCCceeeccC-----------CCcccEeEeCCC
Confidence 345678999999999887532 24577787752 211 11111110 123456789999
Q ss_pred CCceEEEEEeccCCCCccccCcccceeeccCCCCCCCCce-------EeEeeceeEE-EEEecCCceEEEeeeeccccee
Q 004475 253 KPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPE-------ILHKLDLRFS-VSWCDDSLALVNETWYKTSQTR 324 (751)
Q Consensus 253 G~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~-------~l~~~~~~~~-~~~spdg~~l~~~~~~~~~~~~ 324 (751)
|++ ++.+.. ..+.|++++++. . +... .+.... ... +.|+|||++++..... ...-.
T Consensus 137 g~~-l~v~~~-----------~~~~v~v~d~~~-~-g~l~~~~~~~~~~~~g~-~p~~~~~~pdg~~lyv~~~~-~~~v~ 200 (330)
T PRK11028 137 NRT-LWVPCL-----------KEDRIRLFTLSD-D-GHLVAQEPAEVTTVEGA-GPRHMVFHPNQQYAYCVNEL-NSSVD 200 (330)
T ss_pred CCE-EEEeeC-----------CCCEEEEEEECC-C-CcccccCCCceecCCCC-CCceEEECCCCCEEEEEecC-CCEEE
Confidence 998 555431 235788888752 1 1111 111122 223 7899999987765432 22233
Q ss_pred EEEecCCCCCCcceeeeecc-cccccCCCCCC-CeeeCCCCCEEEEeeeecCCcceEEEEccCCCCCCCCCceeEEEecC
Q 004475 325 TWLVCPGSKDVAPRVLFDRV-FENVYSDPGSP-MMTRTSTGTNVIAKIKKENDEQIYILLNGRGFTPEGNIPFLDLFDIN 402 (751)
Q Consensus 325 l~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~-~~~~spDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~ 402 (751)
+|.++..++ ..+.+.... .......+..+ .+.++|||++|+.... ....|.+|+++
T Consensus 201 v~~~~~~~~--~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~--------------------~~~~I~v~~i~ 258 (330)
T PRK11028 201 VWQLKDPHG--EIECVQTLDMMPADFSDTRWAADIHITPDGRHLYACDR--------------------TASLISVFSVS 258 (330)
T ss_pred EEEEeCCCC--CEEEEEEEecCCCcCCCCccceeEEECCCCCEEEEecC--------------------CCCeEEEEEEe
Confidence 444443232 212211111 00000000011 2668999998877541 12256666654
Q ss_pred CCc-eeEEeeccchhhhhceeeeecCCcceeeccCCCEEEEEEecCCCCCeEEEEEcCCCceeEee
Q 004475 403 TGS-KERIWESNREKYFETAVALVFGQGEEDINLNQLKILTSKESKTEITQYHILSWPLKKSSQIT 467 (751)
Q Consensus 403 ~g~-~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~l~~~~~~~g~~~~lt 467 (751)
... ...+..... ....+..+.++|||++|+.+.... ..-.+|.++..+|..+.+.
T Consensus 259 ~~~~~~~~~~~~~---------~~~~p~~~~~~~dg~~l~va~~~~-~~v~v~~~~~~~g~l~~~~ 314 (330)
T PRK11028 259 EDGSVLSFEGHQP---------TETQPRGFNIDHSGKYLIAAGQKS-HHISVYEIDGETGLLTELG 314 (330)
T ss_pred CCCCeEEEeEEEe---------ccccCCceEECCCCCEEEEEEccC-CcEEEEEEcCCCCcEEEcc
Confidence 321 112221110 011234478999999998875332 2334555565566655543
No 144
>PF00756 Esterase: Putative esterase; InterPro: IPR000801 This family contains several seemingly unrelated proteins, including human esterase D; mycobacterial antigen 85, which is responsible for the high affinity of mycobacteria to fibronectin; Corynebacterium glutamicum major secreted protein PS1; and hypothetical proteins from Escherichia coli, yeast, mycobacteria and Haemophilus influenzae.; PDB: 3LS2_A 1VA5_B 1DQZ_B 3HRH_A 1DQY_A 2GZR_A 2GZS_A 3GFF_A 1R88_A 3E4D_D ....
Probab=99.28 E-value=3.2e-12 Score=126.98 Aligned_cols=219 Identities=21% Similarity=0.288 Sum_probs=122.4
Q ss_pred CceEEEEEEcCCCCCCCCCCCccEEEEEcC-CCCcCcccCCcccCCCCccCCCC-chHHHHHHhCC----eEEEEcCCCC
Q 004475 491 GVPLTATLYLPPGYDQSKDGPLPCLFWAYP-EDYKSKDAAGQVRGSPNEFSGMT-PTSSLIFLARR----FAVLAGPSIP 564 (751)
Q Consensus 491 ~~~i~~~~~~P~~~~~~~~~~~P~vv~~HG-g~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~G----~~v~~~~~~~ 564 (751)
|..+..++|+|+++.+ ..++|+|+++|| .++. .... ......++..| .+++.++..+
T Consensus 5 g~~~~~~VylP~~y~~--~~~~PvlylldG~~~~~---------------~~~~~~~~~~~~~~~~~~~~~iiV~i~~~~ 67 (251)
T PF00756_consen 5 GRDRRVWVYLPPGYDP--SKPYPVLYLLDGQSGWF---------------RNGNAQEALDRLIAEGKIPPMIIVVIPNGD 67 (251)
T ss_dssp TEEEEEEEEECTTGGT--TTTEEEEEEESHTTHHH---------------HHHHHHHHHHHHHHHHTSEEEEEEEEESSS
T ss_pred CCeEEEEEEECCCCCC--CCCCEEEEEccCCcccc---------------ccchHHHHHHHHHHhCCCCceEEEEEeccc
Confidence 5678999999999843 346999999999 3210 0000 01122334443 3444423211
Q ss_pred CC-CCC---------CCCC----CchhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEE
Q 004475 565 II-GEG---------DKLP----NDRFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGI 630 (751)
Q Consensus 565 ~~-g~g---------~~~~----~~~~~~~~~~d~~~~v~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v 630 (751)
.. .++ .... ...+...+. .+++.++.++..+.+.+.+|+|+||||+.|+.++.++|+.|.+++
T Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~---~el~p~i~~~~~~~~~~~~i~G~S~GG~~Al~~~l~~Pd~F~~~~ 144 (251)
T PF00756_consen 68 NSRFYTSWYLPAGSSRRADDSGGGDAYETFLT---EELIPYIEANYRTDPDRRAIAGHSMGGYGALYLALRHPDLFGAVI 144 (251)
T ss_dssp TSSTTSBTTSSBCTTCBCTSTTTHHHHHHHHH---THHHHHHHHHSSEEECCEEEEEETHHHHHHHHHHHHSTTTESEEE
T ss_pred ccccccccccccccccccccCCCCcccceehh---ccchhHHHHhcccccceeEEeccCCCcHHHHHHHHhCcccccccc
Confidence 11 100 0000 111222222 366777777766666669999999999999999999999999999
Q ss_pred EccCCCCCCCCccCcccccccchhhHHHHHhcCcccccCCCCCCEEEEEcCCCCCCCC--------ChHHHHHHHHHHHh
Q 004475 631 ARSGSYNKTLTPFGFQTEFRTLWEATNVYIEMSPITHANKIKKPILIIHGEVDDKVGL--------FPMQAERFFDALKG 702 (751)
Q Consensus 631 ~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~li~~G~~D~~vp~--------~~~~~~~~~~~l~~ 702 (751)
+++|.++.....|.. .....|.....+..... .....-..++++.+|+.|..... ......++.+.|..
T Consensus 145 ~~S~~~~~~~~~w~~--~~~~~~~~~~~~~~~~~-~~~~~~~~~i~l~~G~~d~~~~~~~~~~~~~~~~~~~~~~~~l~~ 221 (251)
T PF00756_consen 145 AFSGALDPSPSLWGP--SDDEAWKENDPFDLIKA-LSQKKKPLRIYLDVGTKDEFGGWEDSAQILQFLANNRELAQLLKA 221 (251)
T ss_dssp EESEESETTHCHHHH--STCGHHGGCHHHHHHHH-HHHTTSEEEEEEEEETTSTTHHCSHHHHHHHHHHHHHHHHHHCCC
T ss_pred ccCccccccccccCc--CCcHHhhhccHHHHhhh-hhcccCCCeEEEEeCCCCcccccccCHHHHHHHHHhHhhHHHHHH
Confidence 999986644222211 11111111111110000 01123357899999999983210 01223334444555
Q ss_pred CCCcEEEEEeCCCCCcCCccccHHHHHHHHHHHH
Q 004475 703 HGALSRLVLLPFEHHVYAARENVMHVIWETDRWL 736 (751)
Q Consensus 703 ~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~fl 736 (751)
.+.+..++.++| +|.+ ..+...+...+.||
T Consensus 222 ~g~~~~~~~~~G-~H~~---~~W~~~l~~~L~~~ 251 (251)
T PF00756_consen 222 KGIPHTYHVFPG-GHDW---AYWRRRLPDALPWM 251 (251)
T ss_dssp EECTTESEEEHS-ESSH---HHHHHHHHHHHHHH
T ss_pred cCCCceEEEecC-ccch---hhHHHHHHHHHhhC
Confidence 667788889985 6764 23556666666664
No 145
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.27 E-value=9.7e-10 Score=118.07 Aligned_cols=280 Identities=15% Similarity=0.109 Sum_probs=161.9
Q ss_pred cccceeecCCCCeEEEEEeecccccccCCceeEEEEEcCCCCeeeccCCCCccccceeeeeEEecCCcEEEEeecCCCCC
Q 004475 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRD 111 (751)
Q Consensus 32 ~~~~p~~SPDG~~iaf~~~~~~~~~~~~~~~~l~i~~~~~g~~~~lt~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~ 111 (751)
.+....|||||+.++.... + ..+.+..+.+++...+....++ ...+..++|||||+.|+-.+.+
T Consensus 161 sv~~~~fs~~g~~l~~~~~--------~--~~i~~~~~~~~~~~~~~~l~~h--~~~v~~~~fs~d~~~l~s~s~D---- 224 (456)
T KOG0266|consen 161 SVTCVDFSPDGRALAAASS--------D--GLIRIWKLEGIKSNLLRELSGH--TRGVSDVAFSPDGSYLLSGSDD---- 224 (456)
T ss_pred ceEEEEEcCCCCeEEEccC--------C--CcEEEeecccccchhhcccccc--ccceeeeEECCCCcEEEEecCC----
Confidence 4666899999999988642 3 4444445445541111111111 2257899999999988776443
Q ss_pred CCCCCCCCCCCceeeccccccccchhhhhccCCccchhhhhhheeeEEEEEcC-CC--CceecCCC-ceEEeeeeCCCCc
Q 004475 112 PPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DG--TAKDFGTP-AVYTAVEPSPDQK 187 (751)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~G--~~~~lt~~-~~~~~~~~SpDG~ 187 (751)
..|+++++ +. ..+.+..+ ..+..++|+|+|+
T Consensus 225 ---------------------------------------------~tiriwd~~~~~~~~~~l~gH~~~v~~~~f~p~g~ 259 (456)
T KOG0266|consen 225 ---------------------------------------------KTLRIWDLKDDGRNLKTLKGHSTYVTSVAFSPDGN 259 (456)
T ss_pred ---------------------------------------------ceEEEeeccCCCeEEEEecCCCCceEEEEecCCCC
Confidence 46777777 33 44555555 7788999999996
Q ss_pred eEEEEEecCCcccccccCCCceeEEEEeCCCceeeeeccCCCCCCCCCccCCccCCCceeeeecCCCceEEEEEeccCCC
Q 004475 188 YVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGD 267 (751)
Q Consensus 188 ~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~spdG~~~i~~~~~~~~~~ 267 (751)
.|+..+.+ ..+.+||+.+++..... ......+..++|++||+. |+..+
T Consensus 260 ~i~Sgs~D-------------~tvriWd~~~~~~~~~l------------~~hs~~is~~~f~~d~~~-l~s~s------ 307 (456)
T KOG0266|consen 260 LLVSGSDD-------------GTVRIWDVRTGECVRKL------------KGHSDGISGLAFSPDGNL-LVSAS------ 307 (456)
T ss_pred EEEEecCC-------------CcEEEEeccCCeEEEee------------eccCCceEEEEECCCCCE-EEEcC------
Confidence 55554433 46889999976544321 222334668899999997 55533
Q ss_pred CccccCcccceeeccCCCCCCCC---ceEeEeece--eEE-EEEecCCceEEEeeeecccceeEEEecCCCCCCcceeee
Q 004475 268 ANVEVSPRDIIYTQPAEPAEGEK---PEILHKLDL--RFS-VSWCDDSLALVNETWYKTSQTRTWLVCPGSKDVAPRVLF 341 (751)
Q Consensus 268 ~~~~~~~~~~l~~~~~~~~~~~~---~~~l~~~~~--~~~-~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~l~ 341 (751)
..+.|.++|+. ++. ...+..... .+. +.|+|+|++|+..... ..+-+.++..+ .......
T Consensus 308 ------~d~~i~vwd~~---~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d----~~~~~w~l~~~-~~~~~~~ 373 (456)
T KOG0266|consen 308 ------YDGTIRVWDLE---TGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSASLD----RTLKLWDLRSG-KSVGTYT 373 (456)
T ss_pred ------CCccEEEEECC---CCceeeeecccCCCCCCceeEEEECCCCcEEEEecCC----CeEEEEEccCC-cceeeec
Confidence 34688888886 333 233333333 356 8999999998876632 23444444443 1122222
Q ss_pred ecccc-cccCCCCCCCeeeCCCCCEEEEeeeecCCcceEEEEccCCCCCCCCCceeEEEecCCCceeEEeeccchhhhhc
Q 004475 342 DRVFE-NVYSDPGSPMMTRTSTGTNVIAKIKKENDEQIYILLNGRGFTPEGNIPFLDLFDINTGSKERIWESNREKYFET 420 (751)
Q Consensus 342 ~~~~~-~~~~~~~~~~~~~spDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~ 420 (751)
..... .+. .. +..+++|++++..+.+ ..++.|+.+++...+.......
T Consensus 374 ~~~~~~~~~---~~--~~~~~~~~~i~sg~~d---------------------~~v~~~~~~s~~~~~~l~~h~~----- 422 (456)
T KOG0266|consen 374 GHSNLVRCI---FS--PTLSTGGKLIYSGSED---------------------GSVYVWDSSSGGILQRLEGHSK----- 422 (456)
T ss_pred ccCCcceeE---ec--ccccCCCCeEEEEeCC---------------------ceEEEEeCCccchhhhhcCCCC-----
Confidence 22111 111 11 3358899988887743 3788999987655333222100
Q ss_pred eeeeecCCcceeeccCCCEEEEEEecCCCCCeEE
Q 004475 421 AVALVFGQGEEDINLNQLKILTSKESKTEITQYH 454 (751)
Q Consensus 421 ~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~l~ 454 (751)
......++++..+.++......+..-.+|
T Consensus 423 -----~~~~~~~~~~~~~~~~s~s~~~d~~~~~w 451 (456)
T KOG0266|consen 423 -----AAVSDLSSHPTENLIASSSFEGDGLIRLW 451 (456)
T ss_pred -----CceeccccCCCcCeeeecCcCCCceEEEe
Confidence 00112456666666665543334333333
No 146
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=99.27 E-value=2.9e-08 Score=95.77 Aligned_cols=319 Identities=11% Similarity=0.034 Sum_probs=168.4
Q ss_pred eEEEEEeecccccccCCceeEEEEEcCCCCeeeccCCCCccccceeeeeEEecCCcEEEEeecCCCCCCCCCCCCCCCCc
Q 004475 44 RIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPK 123 (751)
Q Consensus 44 ~iaf~~~~~~~~~~~~~~~~l~i~~~~~g~~~~lt~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~ 123 (751)
+.+|+...++.. +..-.+|.++.++|+...+-..... .....++|+|++++|+.........
T Consensus 3 ~~~YiGtyT~~~---s~gI~v~~ld~~~g~l~~~~~v~~~---~nptyl~~~~~~~~LY~v~~~~~~g------------ 64 (346)
T COG2706 3 QTVYIGTYTKRE---SQGIYVFNLDTKTGELSLLQLVAEL---GNPTYLAVNPDQRHLYVVNEPGEEG------------ 64 (346)
T ss_pred eEEEEeeecccC---CCceEEEEEeCcccccchhhhcccc---CCCceEEECCCCCEEEEEEecCCcC------------
Confidence 455665532111 3345666666566664443222211 1246789999999998875432211
Q ss_pred eeeccccccccchhhhhccCCccchhhhhhheeeEEEEEcC-CCCceecCC----CceEEeeeeCCCCceEEEEEecCCc
Q 004475 124 IQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DGTAKDFGT----PAVYTAVEPSPDQKYVLITSMHRPY 198 (751)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~G~~~~lt~----~~~~~~~~~SpDG~~i~~~~~~~~~ 198 (751)
.-.-|.+|- +|..+.+-. ......++.++||++|+...-..
T Consensus 65 --------------------------------gvaay~iD~~~G~Lt~ln~~~~~g~~p~yvsvd~~g~~vf~AnY~~-- 110 (346)
T COG2706 65 --------------------------------GVAAYRIDPDDGRLTFLNRQTLPGSPPCYVSVDEDGRFVFVANYHS-- 110 (346)
T ss_pred --------------------------------cEEEEEEcCCCCeEEEeeccccCCCCCeEEEECCCCCEEEEEEccC--
Confidence 135566776 575554422 23336788999999988765432
Q ss_pred ccccccCCCceeEEEEeCCC-ceeeeec---cCCCCCCCCCccCCccCCCceeeeecCCCceEEEEEeccCCCCccccCc
Q 004475 199 SYKVPCARFSQKVQVWTTDG-KLVRELC---DLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSP 274 (751)
Q Consensus 199 ~~~~~~~~~~~~l~~~d~~~-~~~~~l~---~~~~~~~~~~~~~~~~~~~~~~~~spdG~~~i~~~~~~~~~~~~~~~~~ 274 (751)
..+-++.+.. +.+..+. .+.+. .|. ...+........+.|||++ |+.... .
T Consensus 111 ----------g~v~v~p~~~dG~l~~~v~~~~h~g~--~p~-~rQ~~~h~H~a~~tP~~~~-l~v~DL-----------G 165 (346)
T COG2706 111 ----------GSVSVYPLQADGSLQPVVQVVKHTGS--GPH-ERQESPHVHSANFTPDGRY-LVVPDL-----------G 165 (346)
T ss_pred ----------ceEEEEEcccCCccccceeeeecCCC--CCC-ccccCCccceeeeCCCCCE-EEEeec-----------C
Confidence 2344444421 3332221 11111 110 0000111335688999998 555431 2
Q ss_pred ccceeeccCCCC--CCCCceEeEeeceeEEEEEecCCceEEEeeeecccceeEEEecCCCCCCcceeeeecccccccCCC
Q 004475 275 RDIIYTQPAEPA--EGEKPEILHKLDLRFSVSWCDDSLALVNETWYKTSQTRTWLVCPGSKDVAPRVLFDRVFENVYSDP 352 (751)
Q Consensus 275 ~~~l~~~~~~~~--~~~~~~~l~~~~~~~~~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~ 352 (751)
.++++++++++. +...+..+..+.+.-.+.|.|+|+..+...+- +..-.+|.++...++.+..+....-..+.....
T Consensus 166 ~Dri~~y~~~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL-~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~ 244 (346)
T COG2706 166 TDRIFLYDLDDGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNEL-NSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTN 244 (346)
T ss_pred CceEEEEEcccCccccccccccCCCCCcceEEEcCCCcEEEEEecc-CCEEEEEEEcCCCceEEEeeeeccCccccCCCC
Confidence 247777777511 11112222222332228899999976665543 233567777776542222222111112222222
Q ss_pred CCCCeeeCCCCCEEEEeeeecCCcceEEEEccCCCCCCCCCceeEEEecCCCceeEEeeccchhhhhceeeeecCCccee
Q 004475 353 GSPMMTRTSTGTNVIAKIKKENDEQIYILLNGRGFTPEGNIPFLDLFDINTGSKERIWESNREKYFETAVALVFGQGEED 432 (751)
Q Consensus 353 ~~~~~~~spDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 432 (751)
+...+..||||+.|+..- + ......++.+|..+|++.-+-..... -..+..+.
T Consensus 245 ~~aaIhis~dGrFLYasN-R-----------------g~dsI~~f~V~~~~g~L~~~~~~~te---------g~~PR~F~ 297 (346)
T COG2706 245 WAAAIHISPDGRFLYASN-R-----------------GHDSIAVFSVDPDGGKLELVGITPTE---------GQFPRDFN 297 (346)
T ss_pred ceeEEEECCCCCEEEEec-C-----------------CCCeEEEEEEcCCCCEEEEEEEeccC---------CcCCccce
Confidence 333477999999876644 2 12233455666667765444222111 01134468
Q ss_pred eccCCCEEEEEEecCCCCCeEEEEEcCCCceeEeec
Q 004475 433 INLNQLKILTSKESKTEITQYHILSWPLKKSSQITN 468 (751)
Q Consensus 433 ~s~dg~~l~~~~~~~~~~~~l~~~~~~~g~~~~lt~ 468 (751)
++++|+.|+....... .-.+|.+|-.+|+...+..
T Consensus 298 i~~~g~~Liaa~q~sd-~i~vf~~d~~TG~L~~~~~ 332 (346)
T COG2706 298 INPSGRFLIAANQKSD-NITVFERDKETGRLTLLGR 332 (346)
T ss_pred eCCCCCEEEEEccCCC-cEEEEEEcCCCceEEeccc
Confidence 9999999888865544 4678999989998776554
No 147
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=99.27 E-value=2.9e-09 Score=106.48 Aligned_cols=233 Identities=10% Similarity=0.127 Sum_probs=134.2
Q ss_pred eeecCCCCeEEEEEeecccccccCCceeEEEEEcCCCCeeeccCCCCccccceeeeeEEecCCcEEEEeecCCCCCCCCC
Q 004475 36 VSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKK 115 (751)
Q Consensus 36 p~~SPDG~~iaf~~~~~~~~~~~~~~~~l~i~~~~~g~~~~lt~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~ 115 (751)
..-.|-|..|+| .++..+++.+++......+.....+ .+....+||.|.+|+-.-.
T Consensus 24 ig~dpkgd~ilY-----------~nGksv~ir~i~~~~~~~iYtEH~~----~vtVAkySPsG~yiASGD~--------- 79 (603)
T KOG0318|consen 24 IGGDPKGDNILY-----------TNGKSVIIRNIDNPASVDIYTEHAH----QVTVAKYSPSGFYIASGDV--------- 79 (603)
T ss_pred eccCCCCCeEEE-----------eCCCEEEEEECCCccceeeeccccc----eeEEEEeCCCceEEeecCC---------
Confidence 345688999999 5668999999988765444322222 2567789999998875411
Q ss_pred CCCCCCCceeeccccccccchhhhhccCCccchhhhhhheeeEEEEEcCCCCceecCCC-----ceEEeeeeCCCCceEE
Q 004475 116 TMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSLDGTAKDFGTP-----AVYTAVEPSPDQKYVL 190 (751)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~G~~~~lt~~-----~~~~~~~~SpDG~~i~ 190 (751)
.+.+.+++.+++..-|.+. +.+.++.|+.||++|+
T Consensus 80 ----------------------------------------sG~vRIWdtt~~~hiLKnef~v~aG~I~Di~Wd~ds~RI~ 119 (603)
T KOG0318|consen 80 ----------------------------------------SGKVRIWDTTQKEHILKNEFQVLAGPIKDISWDFDSKRIA 119 (603)
T ss_pred ----------------------------------------cCcEEEEeccCcceeeeeeeeecccccccceeCCCCcEEE
Confidence 1456667765533333222 6778999999999999
Q ss_pred EEEecCCcccccccCCCceeEEEEeCCCc------eeeeeccCCCCCCCCCccCCccCCCceeeeecCCCceEEEEEecc
Q 004475 191 ITSMHRPYSYKVPCARFSQKVQVWTTDGK------LVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQD 264 (751)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~l~~~d~~~~------~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~spdG~~~i~~~~~~~ 264 (751)
.....++. -..+++||..+. ..+++....+....| .|.++-+-|+. ++|-+
T Consensus 120 avGEGrer---------fg~~F~~DSG~SvGei~GhSr~ins~~~KpsRP---------fRi~T~sdDn~--v~ffe--- 176 (603)
T KOG0318|consen 120 AVGEGRER---------FGHVFLWDSGNSVGEITGHSRRINSVDFKPSRP---------FRIATGSDDNT--VAFFE--- 176 (603)
T ss_pred EEecCccc---------eeEEEEecCCCccceeeccceeEeeeeccCCCc---------eEEEeccCCCe--EEEee---
Confidence 98766431 245778876532 122222222221112 11222233322 22222
Q ss_pred CCCCccccCcccceeeccCCCCCCCCceEeE----eeceeEE-EEEecCCceEEEeeeecccceeEEEecCCCCCCccee
Q 004475 265 RGDANVEVSPRDIIYTQPAEPAEGEKPEILH----KLDLRFS-VSWCDDSLALVNETWYKTSQTRTWLVCPGSKDVAPRV 339 (751)
Q Consensus 265 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~----~~~~~~~-~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~ 339 (751)
+.+.... .+..-+. +.|||||.+++... ....++++|-.++ +..-
T Consensus 177 ------------------------GPPFKFk~s~r~HskFV~~VRysPDG~~Fat~g----sDgki~iyDGktg--e~vg 226 (603)
T KOG0318|consen 177 ------------------------GPPFKFKSSFREHSKFVNCVRYSPDGSRFATAG----SDGKIYIYDGKTG--EKVG 226 (603)
T ss_pred ------------------------CCCeeeeecccccccceeeEEECCCCCeEEEec----CCccEEEEcCCCc--cEEE
Confidence 1111111 1111234 89999999877644 2358999998885 2222
Q ss_pred eee-cccccccCCCCCCCeeeCCCCCEEEEeeeecCCcceEEEEccCCCCCCCCCceeEEEecCCCceeEEe
Q 004475 340 LFD-RVFENVYSDPGSPMMTRTSTGTNVIAKIKKENDEQIYILLNGRGFTPEGNIPFLDLFDINTGSKERIW 410 (751)
Q Consensus 340 l~~-~~~~~~~~~~~~~~~~~spDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l~ 410 (751)
... ...+. .+...++||||+++++..+.+. .+.+||+.+.+..+.|
T Consensus 227 ~l~~~~aHk----GsIfalsWsPDs~~~~T~SaDk---------------------t~KIWdVs~~slv~t~ 273 (603)
T KOG0318|consen 227 ELEDSDAHK----GSIFALSWSPDSTQFLTVSADK---------------------TIKIWDVSTNSLVSTW 273 (603)
T ss_pred EecCCCCcc----ccEEEEEECCCCceEEEecCCc---------------------eEEEEEeeccceEEEe
Confidence 222 11111 1223389999999999888442 5677777776654433
No 148
>PF12740 Chlorophyllase2: Chlorophyllase enzyme; InterPro: IPR010821 This family consists of several chlorophyllase proteins (3.1.1.14 from EC). Chlorophyllase (Chlase) is the first enzyme involved in chlorophyll degradation and catalyses the hydrolysis of the ester bond to yield chlorophyllide and phytol [, , ].; GO: 0047746 chlorophyllase activity, 0015996 chlorophyll catabolic process
Probab=99.26 E-value=4.1e-10 Score=106.84 Aligned_cols=180 Identities=18% Similarity=0.180 Sum_probs=115.2
Q ss_pred EEEEEcCCCCCCCCCCCccEEEEEcCCCCcCcccCCcccCCCCccCCCCchHHHHHHhCCeEEEEcCCCCCCCCCCCCCC
Q 004475 495 TATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGPSIPIIGEGDKLPN 574 (751)
Q Consensus 495 ~~~~~~P~~~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~v~~~~~~~~~g~g~~~~~ 574 (751)
...++.|.+ .+.+|+||++||.. ....+ +..+...+++.||+|+.++.+...+..
T Consensus 5 ~l~v~~P~~-----~g~yPVv~f~~G~~------------~~~s~---Ys~ll~hvAShGyIVV~~d~~~~~~~~----- 59 (259)
T PF12740_consen 5 PLLVYYPSS-----AGTYPVVLFLHGFL------------LINSW---YSQLLEHVASHGYIVVAPDLYSIGGPD----- 59 (259)
T ss_pred CeEEEecCC-----CCCcCEEEEeCCcC------------CCHHH---HHHHHHHHHhCceEEEEecccccCCCC-----
Confidence 456778876 56799999999952 11222 346677899999999996644332211
Q ss_pred chhHHHHHHHHHHHHHHHHHc--C------CCCCCcEEEEEeChHHHHHHHHHHhC-----CCceeEEEEccCCCCCCCC
Q 004475 575 DRFVEQLVSSAEAAVEEVVRR--G------VADPSRIAVGGHSYGAFMTAHLLAHA-----PHLFCCGIARSGSYNKTLT 641 (751)
Q Consensus 575 ~~~~~~~~~d~~~~v~~l~~~--~------~id~~~i~l~G~S~GG~~a~~~a~~~-----p~~~~~~v~~~~~~d~~~~ 641 (751)
.....+++.+.++|+.+. . .+|-+||+|+|||.||-+|..++..+ +.++++++++.|+-.....
T Consensus 60 ---~~~~~~~~~~vi~Wl~~~L~~~l~~~v~~D~s~l~l~GHSrGGk~Af~~al~~~~~~~~~~~~ali~lDPVdG~~~~ 136 (259)
T PF12740_consen 60 ---DTDEVASAAEVIDWLAKGLESKLPLGVKPDFSKLALAGHSRGGKVAFAMALGNASSSLDLRFSALILLDPVDGMSKG 136 (259)
T ss_pred ---cchhHHHHHHHHHHHHhcchhhccccccccccceEEeeeCCCCHHHHHHHhhhcccccccceeEEEEeccccccccc
Confidence 134567778888888762 1 25888999999999999999999887 4589999999997421111
Q ss_pred ccCcccccccchhhHHHHHhcCcccccCCCCCCEEEEEcCCCCC---------CCCChHHHHHHHHHHHhCCCcEEEEEe
Q 004475 642 PFGFQTEFRTLWEATNVYIEMSPITHANKIKKPILIIHGEVDDK---------VGLFPMQAERFFDALKGHGALSRLVLL 712 (751)
Q Consensus 642 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~li~~G~~D~~---------vp~~~~~~~~~~~~l~~~~~~~~~~~~ 712 (751)
.. .. +.. ..+.+ ..-+...|+|++-..-... +| .-.+-.+|++.+ ..+....+.
T Consensus 137 ~~---~~-------P~v-~~~~p--~s~~~~~P~lviGtGLg~~~~~~~~~~CaP-~g~n~~~Ff~~~---~~p~~~~v~ 199 (259)
T PF12740_consen 137 SQ---TE-------PPV-LTYTP--QSFDFSMPALVIGTGLGGEPRNPLFPPCAP-AGVNYREFFDEC---KPPSWHFVA 199 (259)
T ss_pred cC---CC-------Ccc-ccCcc--cccCCCCCeEEEecccCcccccccCCCCCC-CCCCHHHHHHhc---CCCEEEEEe
Confidence 00 00 000 00001 1112458999887766642 22 122345566655 356677778
Q ss_pred CCCCCcC
Q 004475 713 PFEHHVY 719 (751)
Q Consensus 713 ~~~~H~~ 719 (751)
++.||.-
T Consensus 200 ~~~GH~d 206 (259)
T PF12740_consen 200 KDYGHMD 206 (259)
T ss_pred CCCCchH
Confidence 8999964
No 149
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.25 E-value=2.5e-10 Score=124.04 Aligned_cols=163 Identities=20% Similarity=0.255 Sum_probs=96.9
Q ss_pred cccceeecCCCCeEEEEEeecccccccCCceeEEEEEc------C--CCCeeeccCCCCc----cccceeeeeEEecCCc
Q 004475 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADA------E--TGEAKPLFESPDI----CLNAVFGSFVWVNNST 99 (751)
Q Consensus 32 ~~~~p~~SPDG~~iaf~~~~~~~~~~~~~~~~l~i~~~------~--~g~~~~lt~~~~~----~~~~~~~~~~wspDg~ 99 (751)
.+.-.+|||||++||+-+. +....||-... - +|...-+...... +....+..+.||||+.
T Consensus 71 sv~CVR~S~dG~~lAsGSD--------D~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~ 142 (942)
T KOG0973|consen 71 SVNCVRFSPDGSYLASGSD--------DRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDS 142 (942)
T ss_pred ceeEEEECCCCCeEeeccC--------cceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCcc
Confidence 5778899999999999542 33345555552 0 1111111111100 0011356889999999
Q ss_pred EEEEeecCCCCCCCCCCCCCCCCceeeccccccccchhhhhccCCccchhhhhhheeeEEEEEcC-CCC-ceecCCC-ce
Q 004475 100 LLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DGT-AKDFGTP-AV 176 (751)
Q Consensus 100 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~G~-~~~lt~~-~~ 176 (751)
+|+-.+.+ ..|.+++. +.+ .+.+-.+ .-
T Consensus 143 ~lvS~s~D-------------------------------------------------nsViiwn~~tF~~~~vl~~H~s~ 173 (942)
T KOG0973|consen 143 LLVSVSLD-------------------------------------------------NSVIIWNAKTFELLKVLRGHQSL 173 (942)
T ss_pred EEEEeccc-------------------------------------------------ceEEEEccccceeeeeeeccccc
Confidence 99877443 46777777 553 3444444 66
Q ss_pred EEeeeeCCCCceEEEEEecCCcccccccCCCceeEEEEeCCCceeeeeccCCCCCCCCCccCCccCCCceeeeecCCCce
Q 004475 177 YTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPST 256 (751)
Q Consensus 177 ~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~spdG~~~ 256 (751)
+.++.|.|=||+|+..++++ .|-+|+...=........++.+. ......+.++|||||.+
T Consensus 174 VKGvs~DP~Gky~ASqsdDr-------------tikvwrt~dw~i~k~It~pf~~~------~~~T~f~RlSWSPDG~~- 233 (942)
T KOG0973|consen 174 VKGVSWDPIGKYFASQSDDR-------------TLKVWRTSDWGIEKSITKPFEES------PLTTFFLRLSWSPDGHH- 233 (942)
T ss_pred ccceEECCccCeeeeecCCc-------------eEEEEEcccceeeEeeccchhhC------CCcceeeecccCCCcCe-
Confidence 77999999999999987765 46677754322322222232211 11234568999999999
Q ss_pred EEEEEeccCCCCccc
Q 004475 257 LYWVEAQDRGDANVE 271 (751)
Q Consensus 257 i~~~~~~~~~~~~~~ 271 (751)
|+...+-+++.....
T Consensus 234 las~nA~n~~~~~~~ 248 (942)
T KOG0973|consen 234 LASPNAVNGGKSTIA 248 (942)
T ss_pred ecchhhccCCcceeE
Confidence 777655555444333
No 150
>PRK06765 homoserine O-acetyltransferase; Provisional
Probab=99.25 E-value=1.3e-10 Score=120.74 Aligned_cols=69 Identities=14% Similarity=0.167 Sum_probs=58.6
Q ss_pred ccCCCCCCEEEEEcCCCCCCCCChHHHHHHHHHHHhCCCcEEEEEeCC-CCCcCCccccHHHHHHHHHHHHHH
Q 004475 667 HANKIKKPILIIHGEVDDKVGLFPMQAERFFDALKGHGALSRLVLLPF-EHHVYAARENVMHVIWETDRWLQK 738 (751)
Q Consensus 667 ~~~~~~~P~li~~G~~D~~vp~~~~~~~~~~~~l~~~~~~~~~~~~~~-~~H~~~~~~~~~~~~~~~~~fl~~ 738 (751)
.+.++++|+|+++|+.|.++| +..++++.+.++..+..++++++++ .||... .+....+.+.+.+||.+
T Consensus 318 ~L~~I~~PtLvI~G~~D~l~p--~~~~~~la~~lp~~~~~a~l~~I~s~~GH~~~-le~p~~~~~~I~~FL~~ 387 (389)
T PRK06765 318 ALSNIEANVLMIPCKQDLLQP--PRYNYKMVDILQKQGKYAEVYEIESINGHMAG-VFDIHLFEKKIYEFLNR 387 (389)
T ss_pred HHhcCCCCEEEEEeCCCCCCC--HHHHHHHHHHhhhcCCCeEEEEECCCCCcchh-hcCHHHHHHHHHHHHcc
Confidence 345789999999999999999 9999999988887666789999985 899876 56777888899999875
No 151
>KOG2984 consensus Predicted hydrolase [General function prediction only]
Probab=99.24 E-value=1.8e-11 Score=107.15 Aligned_cols=173 Identities=18% Similarity=0.155 Sum_probs=113.5
Q ss_pred CCeEEEEcCCCCCCCCCCCCCCch-h-HHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEE
Q 004475 553 RRFAVLAGPSIPIIGEGDKLPNDR-F-VEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGI 630 (751)
Q Consensus 553 ~G~~v~~~~~~~~~g~g~~~~~~~-~-~~~~~~d~~~~v~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v 630 (751)
.-+.|++ .+-+|||.+-++.. + .+...+|...+++-+++. +..++.++|+|-||..|+.+|+++++.+..+|
T Consensus 70 l~~Tiva---wDPpGYG~SrPP~Rkf~~~ff~~Da~~avdLM~aL---k~~~fsvlGWSdGgiTalivAak~~e~v~rmi 143 (277)
T KOG2984|consen 70 LQVTIVA---WDPPGYGTSRPPERKFEVQFFMKDAEYAVDLMEAL---KLEPFSVLGWSDGGITALIVAAKGKEKVNRMI 143 (277)
T ss_pred CceEEEE---ECCCCCCCCCCCcccchHHHHHHhHHHHHHHHHHh---CCCCeeEeeecCCCeEEEEeeccChhhhhhhe
Confidence 3488888 55668887755432 2 345578888888888775 35789999999999999999999999998888
Q ss_pred EccCCCCCCCCc-cC---------cccccccchhh-------HHHHHh----------cC----cccccCCCCCCEEEEE
Q 004475 631 ARSGSYNKTLTP-FG---------FQTEFRTLWEA-------TNVYIE----------MS----PITHANKIKKPILIIH 679 (751)
Q Consensus 631 ~~~~~~d~~~~~-~~---------~~~~~~~~~~~-------~~~~~~----------~~----~~~~~~~~~~P~li~~ 679 (751)
.+.+........ .. +....+.++++ +..+++ .. =...+.+++||+||+|
T Consensus 144 iwga~ayvn~~~~ma~kgiRdv~kWs~r~R~P~e~~Yg~e~f~~~wa~wvD~v~qf~~~~dG~fCr~~lp~vkcPtli~h 223 (277)
T KOG2984|consen 144 IWGAAAYVNHLGAMAFKGIRDVNKWSARGRQPYEDHYGPETFRTQWAAWVDVVDQFHSFCDGRFCRLVLPQVKCPTLIMH 223 (277)
T ss_pred eecccceecchhHHHHhchHHHhhhhhhhcchHHHhcCHHHHHHHHHHHHHHHHHHhhcCCCchHhhhcccccCCeeEee
Confidence 877642211100 00 00000111111 001111 00 0123678999999999
Q ss_pred cCCCCCCCCChHHHHHHHHHHHhCCCcEEEEEeCCCCCcCCccccHHHHHHHHHHHHHH
Q 004475 680 GEVDDKVGLFPMQAERFFDALKGHGALSRLVLLPFEHHVYAARENVMHVIWETDRWLQK 738 (751)
Q Consensus 680 G~~D~~vp~~~~~~~~~~~~l~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~fl~~ 738 (751)
|++|++++ ..++--+. ....-.++.++|.+.|.+. .....++...+++||++
T Consensus 224 G~kDp~~~--~~hv~fi~----~~~~~a~~~~~peGkHn~h-Lrya~eFnklv~dFl~~ 275 (277)
T KOG2984|consen 224 GGKDPFCG--DPHVCFIP----VLKSLAKVEIHPEGKHNFH-LRYAKEFNKLVLDFLKS 275 (277)
T ss_pred CCcCCCCC--CCCccchh----hhcccceEEEccCCCccee-eechHHHHHHHHHHHhc
Confidence 99999997 45533232 2223458999999999987 55567888899999975
No 152
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.23 E-value=6.9e-10 Score=109.13 Aligned_cols=259 Identities=14% Similarity=0.088 Sum_probs=155.4
Q ss_pred ceeEEeecCCCCCCCCcccccCCCCc-ccccceeecCCCCeEEEEEeecccccccCCceeEEEEEcCCCCeeeccCCCCc
Q 004475 5 TGIGIHRLLPDDSLGPEKEVHGYPDG-AKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDI 83 (751)
Q Consensus 5 ~~~~~~~~~~~~~~g~~~~l~~~~~~-~~~~~p~~SPDG~~iaf~~~~~~~~~~~~~~~~l~i~~~~~g~~~~lt~~~~~ 83 (751)
..+.++-+++ ..-..|+++--. -.+....|+|+|+..+|++ ....-+|.+|+.+++..++....+.
T Consensus 235 ~~lrifqvDG----k~N~~lqS~~l~~fPi~~a~f~p~G~~~i~~s---------~rrky~ysyDle~ak~~k~~~~~g~ 301 (514)
T KOG2055|consen 235 GTLRIFQVDG----KVNPKLQSIHLEKFPIQKAEFAPNGHSVIFTS---------GRRKYLYSYDLETAKVTKLKPPYGV 301 (514)
T ss_pred CcEEEEEecC----ccChhheeeeeccCccceeeecCCCceEEEec---------ccceEEEEeeccccccccccCCCCc
Confidence 3455666666 444455543222 2578899999999777765 3447899999999988777544433
Q ss_pred cccceeeeeEEecCCcEEEEeecCCCCCCCCCCCCCCCCceeeccccccccchhhhhccCCccchhhhhhheeeEEEEEc
Q 004475 84 CLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGS 163 (751)
Q Consensus 84 ~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 163 (751)
+ ..++..+.-||||++|++... .+.|+++.
T Consensus 302 e-~~~~e~FeVShd~~fia~~G~-------------------------------------------------~G~I~lLh 331 (514)
T KOG2055|consen 302 E-EKSMERFEVSHDSNFIAIAGN-------------------------------------------------NGHIHLLH 331 (514)
T ss_pred c-cchhheeEecCCCCeEEEccc-------------------------------------------------CceEEeeh
Confidence 3 224678899999999988621 16788887
Q ss_pred C-CCCc-eecCCCceEEeeeeCCCCceEEEEEecCCcccccccCCCceeEEEEeCCCceeeeeccCCCCCCCCCccCCcc
Q 004475 164 L-DGTA-KDFGTPAVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVR 241 (751)
Q Consensus 164 ~-~G~~-~~lt~~~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~ 241 (751)
. +++. ..+.-.+.+.+++||.||+.|+.... ..++|+||+............+.
T Consensus 332 akT~eli~s~KieG~v~~~~fsSdsk~l~~~~~-------------~GeV~v~nl~~~~~~~rf~D~G~----------- 387 (514)
T KOG2055|consen 332 AKTKELITSFKIEGVVSDFTFSSDSKELLASGG-------------TGEVYVWNLRQNSCLHRFVDDGS----------- 387 (514)
T ss_pred hhhhhhhheeeeccEEeeEEEecCCcEEEEEcC-------------CceEEEEecCCcceEEEEeecCc-----------
Confidence 7 6632 22333377889999999999987643 34799999986543332222221
Q ss_pred CCCceeeeecCCCceEEEEEeccCCCCccccCcccceeeccCC-CCCCCCceEeEe---eceeEE-EEEecCCceEEEee
Q 004475 242 EGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAE-PAEGEKPEILHK---LDLRFS-VSWCDDSLALVNET 316 (751)
Q Consensus 242 ~~~~~~~~spdG~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~l~~---~~~~~~-~~~spdg~~l~~~~ 316 (751)
..-..++.|++|++ ++.-+ ..+.+-+++.+ ...+..++++.. .-..+. +.|++|++.|+..+
T Consensus 388 v~gts~~~S~ng~y-lA~GS------------~~GiVNIYd~~s~~~s~~PkPik~~dNLtt~Itsl~Fn~d~qiLAiaS 454 (514)
T KOG2055|consen 388 VHGTSLCISLNGSY-LATGS------------DSGIVNIYDGNSCFASTNPKPIKTVDNLTTAITSLQFNHDAQILAIAS 454 (514)
T ss_pred cceeeeeecCCCce-EEecc------------CcceEEEeccchhhccCCCCchhhhhhhheeeeeeeeCcchhhhhhhh
Confidence 11226788999997 55533 23444444432 123445555543 334556 89999999999887
Q ss_pred eecccceeEEEecCCCCCCcceeeeecccccccCCCCCCCeeeCCCCCEEEEee
Q 004475 317 WYKTSQTRTWLVCPGSKDVAPRVLFDRVFENVYSDPGSPMMTRTSTGTNVIAKI 370 (751)
Q Consensus 317 ~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~spDG~~l~~~~ 370 (751)
+.... .+-++.+.+- +...+.+....- ....--++|||.|-++++.-
T Consensus 455 ~~~kn--alrLVHvPS~----TVFsNfP~~n~~-vg~vtc~aFSP~sG~lAvGN 501 (514)
T KOG2055|consen 455 RVKKN--ALRLVHVPSC----TVFSNFPTSNTK-VGHVTCMAFSPNSGYLAVGN 501 (514)
T ss_pred hcccc--ceEEEeccce----eeeccCCCCCCc-ccceEEEEecCCCceEEeec
Confidence 54332 3333433331 111111100000 00011178999999998876
No 153
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.22 E-value=5.3e-09 Score=108.46 Aligned_cols=301 Identities=10% Similarity=0.033 Sum_probs=151.3
Q ss_pred ceeEEEEEcCCCCeeeccCCCCccccceeeeeEEecCCcEEEEeecCCCCCCCCCCCCCCCCceeeccccccccchhhhh
Q 004475 61 KLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDN 140 (751)
Q Consensus 61 ~~~l~i~~~~~g~~~~lt~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (751)
.-.+|.+|.++|+...+..... ......++++|++++|+.........
T Consensus 14 gI~~~~~d~~~g~l~~~~~~~~---~~~Ps~l~~~~~~~~LY~~~e~~~~~----------------------------- 61 (345)
T PF10282_consen 14 GIYVFRFDEETGTLTLVQTVAE---GENPSWLAVSPDGRRLYVVNEGSGDS----------------------------- 61 (345)
T ss_dssp EEEEEEEETTTTEEEEEEEEEE---SSSECCEEE-TTSSEEEEEETTSSTT-----------------------------
T ss_pred cEEEEEEcCCCCCceEeeeecC---CCCCceEEEEeCCCEEEEEEccccCC-----------------------------
Confidence 3444555557777665532111 00236789999999998885532000
Q ss_pred ccCCccchhhhhhheeeEEEEEcCC-CCceecC----CCceEEeeeeCCCCceEEEEEecCCcccccccCCCceeEEEEe
Q 004475 141 LLKDEYDESLFDYYTTAQLVLGSLD-GTAKDFG----TPAVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWT 215 (751)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~l~~~~~~-G~~~~lt----~~~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~l~~~d 215 (751)
..-..|.++-+ |+.+.+. .......++.+|||++|++..-. ...+.+++
T Consensus 62 --------------g~v~~~~i~~~~g~L~~~~~~~~~g~~p~~i~~~~~g~~l~vany~------------~g~v~v~~ 115 (345)
T PF10282_consen 62 --------------GGVSSYRIDPDTGTLTLLNSVPSGGSSPCHIAVDPDGRFLYVANYG------------GGSVSVFP 115 (345)
T ss_dssp --------------TEEEEEEEETTTTEEEEEEEEEESSSCEEEEEECTTSSEEEEEETT------------TTEEEEEE
T ss_pred --------------CCEEEEEECCCcceeEEeeeeccCCCCcEEEEEecCCCEEEEEEcc------------CCeEEEEE
Confidence 11234444444 6544432 22444578899999999987543 23566666
Q ss_pred CCC-ceeeee---ccCCCCCCCCCccCCccCCCceeeeecCCCceEEEEEeccCCCCccccCcccceeeccCCCCCCCCc
Q 004475 216 TDG-KLVREL---CDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKP 291 (751)
Q Consensus 216 ~~~-~~~~~l---~~~~~~~~~~~~~~~~~~~~~~~~~spdG~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 291 (751)
++. +.+... ...++. .|..-.........+.++|||++ ++.+.. ..+.|++++++..+ +..
T Consensus 116 l~~~g~l~~~~~~~~~~g~--g~~~~rq~~~h~H~v~~~pdg~~-v~v~dl-----------G~D~v~~~~~~~~~-~~l 180 (345)
T PF10282_consen 116 LDDDGSLGEVVQTVRHEGS--GPNPDRQEGPHPHQVVFSPDGRF-VYVPDL-----------GADRVYVYDIDDDT-GKL 180 (345)
T ss_dssp ECTTSEEEEEEEEEESEEE--ESSTTTTSSTCEEEEEE-TTSSE-EEEEET-----------TTTEEEEEEE-TTS--TE
T ss_pred ccCCcccceeeeecccCCC--CCcccccccccceeEEECCCCCE-EEEEec-----------CCCEEEEEEEeCCC-ceE
Confidence 653 333322 111111 11111112233457899999998 555431 23467777775222 122
Q ss_pred eE---e--EeeceeEEEEEecCCceEEEeeeecccceeEEEecCCCCCCcceeeeeccc--ccccCCCCCCCeeeCCCCC
Q 004475 292 EI---L--HKLDLRFSVSWCDDSLALVNETWYKTSQTRTWLVCPGSKDVAPRVLFDRVF--ENVYSDPGSPMMTRTSTGT 364 (751)
Q Consensus 292 ~~---l--~~~~~~~~~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~--~~~~~~~~~~~~~~spDG~ 364 (751)
.. + ..+.+...+.|+|||++++...+. .+.|..++.+...+..+.+..... ...........+++||||+
T Consensus 181 ~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~---s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~ 257 (345)
T PF10282_consen 181 TPVDSIKVPPGSGPRHLAFSPDGKYAYVVNEL---SNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGR 257 (345)
T ss_dssp EEEEEEECSTTSSEEEEEE-TTSSEEEEEETT---TTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSS
T ss_pred EEeeccccccCCCCcEEEEcCCcCEEEEecCC---CCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecCCC
Confidence 22 1 112222227899999987766532 234444444421122222211111 0100000112277999999
Q ss_pred EEEEeeeecCCcceEEEEccCCCCCCCCCceeEEEec--CCCceeEEeeccchhhhhceeeeecCCcceeeccCCCEEEE
Q 004475 365 NVIAKIKKENDEQIYILLNGRGFTPEGNIPFLDLFDI--NTGSKERIWESNREKYFETAVALVFGQGEEDINLNQLKILT 442 (751)
Q Consensus 365 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~--~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~ 442 (751)
+|+.... ....|..+++ ++|+++.+-..... -..+..++++|||++|++
T Consensus 258 ~lyvsnr--------------------~~~sI~vf~~d~~~g~l~~~~~~~~~---------G~~Pr~~~~s~~g~~l~V 308 (345)
T PF10282_consen 258 FLYVSNR--------------------GSNSISVFDLDPATGTLTLVQTVPTG---------GKFPRHFAFSPDGRYLYV 308 (345)
T ss_dssp EEEEEEC--------------------TTTEEEEEEECTTTTTEEEEEEEEES---------SSSEEEEEE-TTSSEEEE
T ss_pred EEEEEec--------------------cCCEEEEEEEecCCCceEEEEEEeCC---------CCCccEEEEeCCCCEEEE
Confidence 8877662 1235555555 56777655322110 011334689999998887
Q ss_pred EEecCCCCCeEEEEEcCCCceeEee
Q 004475 443 SKESKTEITQYHILSWPLKKSSQIT 467 (751)
Q Consensus 443 ~~~~~~~~~~l~~~~~~~g~~~~lt 467 (751)
...... .-.++.+|.++|+++.+.
T Consensus 309 a~~~s~-~v~vf~~d~~tG~l~~~~ 332 (345)
T PF10282_consen 309 ANQDSN-TVSVFDIDPDTGKLTPVG 332 (345)
T ss_dssp EETTTT-EEEEEEEETTTTEEEEEE
T ss_pred EecCCC-eEEEEEEeCCCCcEEEec
Confidence 654333 345777787888877654
No 154
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.22 E-value=1.1e-09 Score=107.69 Aligned_cols=279 Identities=10% Similarity=0.041 Sum_probs=159.3
Q ss_pred CcccccceeecCCCCeEEEEEeecccccccCCceeEEEEEcCCCCeeeccCCCCccccceeeeeEEecCCcEEEEeecCC
Q 004475 29 DGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSS 108 (751)
Q Consensus 29 ~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~~~~~l~i~~~~~g~~~~lt~~~~~~~~~~~~~~~wspDg~~l~~~~~~~ 108 (751)
....++...|+|--..+..... ++..+||-+| |..-..|++..-.. . .+....++|+|+..+|++.
T Consensus 212 s~~~I~sv~FHp~~plllvaG~--------d~~lrifqvD--Gk~N~~lqS~~l~~-f-Pi~~a~f~p~G~~~i~~s~-- 277 (514)
T KOG2055|consen 212 SHGGITSVQFHPTAPLLLVAGL--------DGTLRIFQVD--GKVNPKLQSIHLEK-F-PIQKAEFAPNGHSVIFTSG-- 277 (514)
T ss_pred CcCCceEEEecCCCceEEEecC--------CCcEEEEEec--CccChhheeeeecc-C-ccceeeecCCCceEEEecc--
Confidence 3346889999997766555321 4445555555 44333443221110 1 2557799999995555522
Q ss_pred CCCCCCCCCCCCCCceeeccccccccchhhhhccCCccchhhhhhheeeEEEEEcC-CCCceecCCC-----ceEEeeee
Q 004475 109 RRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DGTAKDFGTP-----AVYTAVEP 182 (751)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~G~~~~lt~~-----~~~~~~~~ 182 (751)
+..-+|.+|+ +++..++... ..+..+..
T Consensus 278 ----------------------------------------------rrky~ysyDle~ak~~k~~~~~g~e~~~~e~FeV 311 (514)
T KOG2055|consen 278 ----------------------------------------------RRKYLYSYDLETAKVTKLKPPYGVEEKSMERFEV 311 (514)
T ss_pred ----------------------------------------------cceEEEEeeccccccccccCCCCcccchhheeEe
Confidence 1146889999 7776666443 35678999
Q ss_pred CCCCceEEEEEecCCcccccccCCCceeEEEEeCCCceeeeeccCCCCCCCCCccCCccCCCceeeeecCCCceEEEEEe
Q 004475 183 SPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEA 262 (751)
Q Consensus 183 SpDG~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~spdG~~~i~~~~~ 262 (751)
|||+++|++.... ..|++....+++.. +.... +..++++.|+.||+. |+.+.
T Consensus 312 Shd~~fia~~G~~-------------G~I~lLhakT~eli--~s~Ki-----------eG~v~~~~fsSdsk~-l~~~~- 363 (514)
T KOG2055|consen 312 SHDSNFIAIAGNN-------------GHIHLLHAKTKELI--TSFKI-----------EGVVSDFTFSSDSKE-LLASG- 363 (514)
T ss_pred cCCCCeEEEcccC-------------ceEEeehhhhhhhh--heeee-----------ccEEeeEEEecCCcE-EEEEc-
Confidence 9999999987543 35777776666432 11111 123568999999987 55433
Q ss_pred ccCCCCccccCcccceeeccCCCCCCCCceEeEeeceeE-E--EEEecCCceEEEeeeecccceeEEEecCCCCCCccee
Q 004475 263 QDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRF-S--VSWCDDSLALVNETWYKTSQTRTWLVCPGSKDVAPRV 339 (751)
Q Consensus 263 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~-~--~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~ 339 (751)
..+++|++++.. . ...... ..++.+ . +..|++|.+|+.++. .+--.||-.+---....++.
T Consensus 364 -----------~~GeV~v~nl~~-~-~~~~rf-~D~G~v~gts~~~S~ng~ylA~GS~--~GiVNIYd~~s~~~s~~PkP 427 (514)
T KOG2055|consen 364 -----------GTGEVYVWNLRQ-N-SCLHRF-VDDGSVHGTSLCISLNGSYLATGSD--SGIVNIYDGNSCFASTNPKP 427 (514)
T ss_pred -----------CCceEEEEecCC-c-ceEEEE-eecCccceeeeeecCCCceEEeccC--cceEEEeccchhhccCCCCc
Confidence 336899999851 1 122222 223333 3 788999999888773 22223443221111134444
Q ss_pred eeecc--cccccCCCCCCCeeeCCCCCEEEEeeeecCCcceEEEEccCCCCCCCCCceeEEEecCCCceeEEeeccchhh
Q 004475 340 LFDRV--FENVYSDPGSPMMTRTSTGTNVIAKIKKENDEQIYILLNGRGFTPEGNIPFLDLFDINTGSKERIWESNREKY 417 (751)
Q Consensus 340 l~~~~--~~~~~~~~~~~~~~~spDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~ 417 (751)
+.... ...+.+ ++|+||++.|+..+.. ....|++..+.+-.+-.-|..... .
T Consensus 428 ik~~dNLtt~Its------l~Fn~d~qiLAiaS~~-------------------~knalrLVHvPS~TVFsNfP~~n~-~ 481 (514)
T KOG2055|consen 428 IKTVDNLTTAITS------LQFNHDAQILAIASRV-------------------KKNALRLVHVPSCTVFSNFPTSNT-K 481 (514)
T ss_pred hhhhhhhheeeee------eeeCcchhhhhhhhhc-------------------cccceEEEeccceeeeccCCCCCC-c
Confidence 43211 011111 8899999999888832 234666666654433333332211 1
Q ss_pred hhceeeeecCCcceeeccCCCEEEEEE
Q 004475 418 FETAVALVFGQGEEDINLNQLKILTSK 444 (751)
Q Consensus 418 ~~~~~~~~~~~~~~~~s~dg~~l~~~~ 444 (751)
+.+++. .+|||.|..|++-.
T Consensus 482 vg~vtc-------~aFSP~sG~lAvGN 501 (514)
T KOG2055|consen 482 VGHVTC-------MAFSPNSGYLAVGN 501 (514)
T ss_pred ccceEE-------EEecCCCceEEeec
Confidence 122222 58999999998864
No 155
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.22 E-value=5.5e-10 Score=104.53 Aligned_cols=121 Identities=16% Similarity=0.154 Sum_probs=79.2
Q ss_pred eeeEEEEEcC-CCCceec--CCCceEEeeeeCCCCceEEEEEecCCcccccccCCCceeEEEEeCCCceeeeeccCCCCC
Q 004475 155 TTAQLVLGSL-DGTAKDF--GTPAVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAE 231 (751)
Q Consensus 155 ~~~~l~~~~~-~G~~~~l--t~~~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~ 231 (751)
....||.++. +.....+ ...+.+.+++|||+|+.+++.... .+..+.+||+++.....+...
T Consensus 37 ~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~-----------~~~~v~lyd~~~~~i~~~~~~---- 101 (194)
T PF08662_consen 37 GEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGS-----------MPAKVTLYDVKGKKIFSFGTQ---- 101 (194)
T ss_pred eeEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEcc-----------CCcccEEEcCcccEeEeecCC----
Confidence 4478999988 4444444 333569999999999999887432 134678899875554443211
Q ss_pred CCCCccCCccCCCceeeeecCCCceEEEEEeccCCCCccccCcccceeeccCCCCCCCCceEeEeec-eeEE-EEEecCC
Q 004475 232 DIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLD-LRFS-VSWCDDS 309 (751)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~spdG~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~-~~~~-~~~spdg 309 (751)
....+.|||+|+. |+.+... ...+.|.++|.+ ..+.+.... .... +.|||||
T Consensus 102 -----------~~n~i~wsP~G~~-l~~~g~~---------n~~G~l~~wd~~-----~~~~i~~~~~~~~t~~~WsPdG 155 (194)
T PF08662_consen 102 -----------PRNTISWSPDGRF-LVLAGFG---------NLNGDLEFWDVR-----KKKKISTFEHSDATDVEWSPDG 155 (194)
T ss_pred -----------CceEEEECCCCCE-EEEEEcc---------CCCcEEEEEECC-----CCEEeeccccCcEEEEEEcCCC
Confidence 1236899999998 6665411 123678889885 233343322 2345 9999999
Q ss_pred ceEEEee
Q 004475 310 LALVNET 316 (751)
Q Consensus 310 ~~l~~~~ 316 (751)
++|+.++
T Consensus 156 r~~~ta~ 162 (194)
T PF08662_consen 156 RYLATAT 162 (194)
T ss_pred CEEEEEE
Confidence 9998765
No 156
>PLN02980 2-oxoglutarate decarboxylase/ hydro-lyase/ magnesium ion binding / thiamin pyrophosphate binding
Probab=99.22 E-value=5.4e-10 Score=136.76 Aligned_cols=201 Identities=16% Similarity=0.215 Sum_probs=123.2
Q ss_pred ccEEEEEcCCCCcCcccCCcccCCCCccCCCCchHHHHHHhCCeEEEEcCCCCCCCCCCCCCCc----------hhHHHH
Q 004475 512 LPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGPSIPIIGEGDKLPND----------RFVEQL 581 (751)
Q Consensus 512 ~P~vv~~HGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~v~~~~~~~~~g~g~~~~~~----------~~~~~~ 581 (751)
.|+||++||.+. +...|. ..... ...+|.|++ ++.+|+|.+.... ...+..
T Consensus 1371 ~~~vVllHG~~~-----------s~~~w~----~~~~~-L~~~~rVi~---~Dl~G~G~S~~~~~~~~~~~~~~~si~~~ 1431 (1655)
T PLN02980 1371 GSVVLFLHGFLG-----------TGEDWI----PIMKA-ISGSARCIS---IDLPGHGGSKIQNHAKETQTEPTLSVELV 1431 (1655)
T ss_pred CCeEEEECCCCC-----------CHHHHH----HHHHH-HhCCCEEEE---EcCCCCCCCCCccccccccccccCCHHHH
Confidence 578999999641 111111 22223 345799999 5666777653221 123344
Q ss_pred HHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEccCCCCCCCCc---c---------------
Q 004475 582 VSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGSYNKTLTP---F--------------- 643 (751)
Q Consensus 582 ~~d~~~~v~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~~d~~~~~---~--------------- 643 (751)
.+++...++.+ ..+++.++||||||.+|+.++.++|++++++|++++........ .
T Consensus 1432 a~~l~~ll~~l------~~~~v~LvGhSmGG~iAl~~A~~~P~~V~~lVlis~~p~~~~~~~~~~~~~~~~~~~~~l~~~ 1505 (1655)
T PLN02980 1432 ADLLYKLIEHI------TPGKVTLVGYSMGARIALYMALRFSDKIEGAVIISGSPGLKDEVARKIRSAKDDSRARMLIDH 1505 (1655)
T ss_pred HHHHHHHHHHh------CCCCEEEEEECHHHHHHHHHHHhChHhhCEEEEECCCCccCchHHHHHHhhhhhHHHHHHHhh
Confidence 44444444432 34689999999999999999999999999999887642110000 0
Q ss_pred Ccc---c--ccccchhh----H---------------H----HHHhc------CcccccCCCCCCEEEEEcCCCCCCCCC
Q 004475 644 GFQ---T--EFRTLWEA----T---------------N----VYIEM------SPITHANKIKKPILIIHGEVDDKVGLF 689 (751)
Q Consensus 644 ~~~---~--~~~~~~~~----~---------------~----~~~~~------~~~~~~~~~~~P~li~~G~~D~~vp~~ 689 (751)
+.. . .....|.. . . .+... .....+.++++|+|+++|++|..++
T Consensus 1506 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~dl~~~L~~I~~PtLlI~Ge~D~~~~-- 1583 (1655)
T PLN02980 1506 GLEIFLENWYSGELWKSLRNHPHFNKIVASRLLHKDVPSLAKLLSDLSIGRQPSLWEDLKQCDTPLLLVVGEKDVKFK-- 1583 (1655)
T ss_pred hHHHHHHHhccHHHhhhhccCHHHHHHHHHHHhcCCHHHHHHHHHHhhhcccchHHHHHhhCCCCEEEEEECCCCccH--
Confidence 000 0 00000000 0 0 00000 0112366789999999999998764
Q ss_pred hHHHHHHHHHHHhCC--------CcEEEEEeCCCCCcCCccccHHHHHHHHHHHHHHHhc
Q 004475 690 PMQAERFFDALKGHG--------ALSRLVLLPFEHHVYAARENVMHVIWETDRWLQKYCL 741 (751)
Q Consensus 690 ~~~~~~~~~~l~~~~--------~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~fl~~~l~ 741 (751)
..+.++.+.+.+.. ..++++++|++||..+ .+....+.+.+.+||...-.
T Consensus 1584 -~~a~~~~~~i~~a~~~~~~~~~~~a~lvvI~~aGH~~~-lE~Pe~f~~~I~~FL~~~~~ 1641 (1655)
T PLN02980 1584 -QIAQKMYREIGKSKESGNDKGKEIIEIVEIPNCGHAVH-LENPLPVIRALRKFLTRLHN 1641 (1655)
T ss_pred -HHHHHHHHHccccccccccccccceEEEEECCCCCchH-HHCHHHHHHHHHHHHHhccc
Confidence 56666776665421 1368999999999876 67788899999999997543
No 157
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=99.21 E-value=4.8e-09 Score=106.11 Aligned_cols=246 Identities=15% Similarity=0.133 Sum_probs=148.9
Q ss_pred cceeEEeecCCCCCCCCcccccCCCCcccccceeecCCCCeEEEEEeecccccccCCceeEEEEEcCCCCe-eeccCCCC
Q 004475 4 FTGIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEA-KPLFESPD 82 (751)
Q Consensus 4 ~~~~~~~~~~~~~~~g~~~~l~~~~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~~~~~l~i~~~~~g~~-~~lt~~~~ 82 (751)
...|++|++.+ ++...... .....+....|+|+++.|++.. ..+.|+++++.+++. ..+.....
T Consensus 30 ~g~i~i~~~~~----~~~~~~~~-~~~~~i~~~~~~~~~~~l~~~~----------~~~~i~i~~~~~~~~~~~~~~~~~ 94 (289)
T cd00200 30 DGTIKVWDLET----GELLRTLK-GHTGPVRDVAASADGTYLASGS----------SDKTIRLWDLETGECVRTLTGHTS 94 (289)
T ss_pred CcEEEEEEeeC----CCcEEEEe-cCCcceeEEEECCCCCEEEEEc----------CCCeEEEEEcCcccceEEEeccCC
Confidence 34688999987 65333221 1222456899999998888863 347888888877543 33322221
Q ss_pred ccccceeeeeEEecCCcEEEEeecCCCCCCCCCCCCCCCCceeeccccccccchhhhhccCCccchhhhhhheeeEEEEE
Q 004475 83 ICLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLG 162 (751)
Q Consensus 83 ~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 162 (751)
.+..+.|+|+++.|+....+ ..|.++
T Consensus 95 -----~i~~~~~~~~~~~~~~~~~~-------------------------------------------------~~i~~~ 120 (289)
T cd00200 95 -----YVSSVAFSPDGRILSSSSRD-------------------------------------------------KTIKVW 120 (289)
T ss_pred -----cEEEEEEcCCCCEEEEecCC-------------------------------------------------CeEEEE
Confidence 36788999998766655311 467778
Q ss_pred cC-CCC-ceecCCC-ceEEeeeeCCCCceEEEEEecCCcccccccCCCceeEEEEeCCCceeeeeccCCCCCCCCCccCC
Q 004475 163 SL-DGT-AKDFGTP-AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNS 239 (751)
Q Consensus 163 ~~-~G~-~~~lt~~-~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~ 239 (751)
++ +++ ...+..+ ..+..+.|+|+++.|+.... ...+.+||+.+++...... .
T Consensus 121 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-------------~~~i~i~d~~~~~~~~~~~------------~ 175 (289)
T cd00200 121 DVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQ-------------DGTIKLWDLRTGKCVATLT------------G 175 (289)
T ss_pred ECCCcEEEEEeccCCCcEEEEEEcCcCCEEEEEcC-------------CCcEEEEEccccccceeEe------------c
Confidence 87 453 3334433 56889999999887776542 2358899987554332211 1
Q ss_pred ccCCCceeeeecCCCceEEEEEeccCCCCccccCcccceeeccCCCCCCCCceEeEeeceeEE-EEEecCCceEEEeeee
Q 004475 240 VREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFS-VSWCDDSLALVNETWY 318 (751)
Q Consensus 240 ~~~~~~~~~~spdG~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~-~~~spdg~~l~~~~~~ 318 (751)
....+..+.|+|+++. +++.. ..+.+.++++.. +.....+......+. +.|+|++..++...
T Consensus 176 ~~~~i~~~~~~~~~~~-l~~~~------------~~~~i~i~d~~~--~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~-- 238 (289)
T cd00200 176 HTGEVNSVAFSPDGEK-LLSSS------------SDGTIKLWDLST--GKCLGTLRGHENGVNSVAFSPDGYLLASGS-- 238 (289)
T ss_pred CccccceEEECCCcCE-EEEec------------CCCcEEEEECCC--CceecchhhcCCceEEEEEcCCCcEEEEEc--
Confidence 1123568999999987 55543 135788888741 122222323444566 89999977665543
Q ss_pred cccceeEEEecCCCCCCcceeeeecccccccCCCCCCCeeeCCCCCEEEEee
Q 004475 319 KTSQTRTWLVCPGSKDVAPRVLFDRVFENVYSDPGSPMMTRTSTGTNVIAKI 370 (751)
Q Consensus 319 ~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~spDG~~l~~~~ 370 (751)
....|++++..++ ............... +.|+|+|+.|+..+
T Consensus 239 --~~~~i~i~~~~~~--~~~~~~~~~~~~i~~------~~~~~~~~~l~~~~ 280 (289)
T cd00200 239 --EDGTIRVWDLRTG--ECVQTLSGHTNSVTS------LAWSPDGKRLASGS 280 (289)
T ss_pred --CCCcEEEEEcCCc--eeEEEccccCCcEEE------EEECCCCCEEEEec
Confidence 1246777777653 222222211111112 78999999887766
No 158
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=99.21 E-value=9.9e-09 Score=93.09 Aligned_cols=267 Identities=8% Similarity=0.008 Sum_probs=162.5
Q ss_pred CCceeEEEEEcCCCCeee-ccCCCCccccceeeeeEEecCCcEEEEeecCCCCCCCCCCCCCCCCceeeccccccccchh
Q 004475 59 SCKLRVWIADAETGEAKP-LFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRM 137 (751)
Q Consensus 59 ~~~~~l~i~~~~~g~~~~-lt~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (751)
.+...|.++.+.+|.-.+ +-.... -++.+..+||++.|+...
T Consensus 17 ~YDhTIRfWqa~tG~C~rTiqh~ds-----qVNrLeiTpdk~~LAaa~-------------------------------- 59 (311)
T KOG0315|consen 17 GYDHTIRFWQALTGICSRTIQHPDS-----QVNRLEITPDKKDLAAAG-------------------------------- 59 (311)
T ss_pred cCcceeeeeehhcCeEEEEEecCcc-----ceeeEEEcCCcchhhhcc--------------------------------
Confidence 566888888998998444 433333 367889999999998762
Q ss_pred hhhccCCccchhhhhhheeeEEEEEcC-CCCceecC---CC-ceEEeeeeCCCCceEEEEEecCCcccccccCCCceeEE
Q 004475 138 TDNLLKDEYDESLFDYYTTAQLVLGSL-DGTAKDFG---TP-AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQ 212 (751)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~l~~~~~-~G~~~~lt---~~-~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~l~ 212 (751)
..+|.++|+ ++...++. .+ ..+..+.|--|||+++..+.+ ..+.
T Consensus 60 ------------------~qhvRlyD~~S~np~Pv~t~e~h~kNVtaVgF~~dgrWMyTgseD-------------gt~k 108 (311)
T KOG0315|consen 60 ------------------NQHVRLYDLNSNNPNPVATFEGHTKNVTAVGFQCDGRWMYTGSED-------------GTVK 108 (311)
T ss_pred ------------------CCeeEEEEccCCCCCceeEEeccCCceEEEEEeecCeEEEecCCC-------------ceEE
Confidence 147888888 66443332 23 678899999999999865443 3577
Q ss_pred EEeCCCceeeeeccCCCCCCCCCccCCccCCCceeeeecCCCceEEEEEeccCCCCccccCcccceeeccCCCCCCCCce
Q 004475 213 VWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPE 292 (751)
Q Consensus 213 ~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~spdG~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 292 (751)
+||+..-..+++...... +..+..+|+...||.- . ..+.|+++|+.. .....
T Consensus 109 IWdlR~~~~qR~~~~~sp-------------Vn~vvlhpnQteLis~-d------------qsg~irvWDl~~--~~c~~ 160 (311)
T KOG0315|consen 109 IWDLRSLSCQRNYQHNSP-------------VNTVVLHPNQTELISG-D------------QSGNIRVWDLGE--NSCTH 160 (311)
T ss_pred EEeccCcccchhccCCCC-------------cceEEecCCcceEEee-c------------CCCcEEEEEccC--Ccccc
Confidence 899987655555444322 3477889998884333 1 346899999841 22333
Q ss_pred Ee-EeeceeEE-EEEecCCceEEEeeeecccceeEEEecCCCC--CCcceeeeecccccccCCCCCCCeeeCCCCCEEEE
Q 004475 293 IL-HKLDLRFS-VSWCDDSLALVNETWYKTSQTRTWLVCPGSK--DVAPRVLFDRVFENVYSDPGSPMMTRTSTGTNVIA 368 (751)
Q Consensus 293 ~l-~~~~~~~~-~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~--~~~~~~l~~~~~~~~~~~~~~~~~~~spDG~~l~~ 368 (751)
++ .+.+..+. +...|||++++...++ ...|..++-+. ....+.++........ .-.-.+|||+|+|+.
T Consensus 161 ~liPe~~~~i~sl~v~~dgsml~a~nnk----G~cyvW~l~~~~~~s~l~P~~k~~ah~~~----il~C~lSPd~k~lat 232 (311)
T KOG0315|consen 161 ELIPEDDTSIQSLTVMPDGSMLAAANNK----GNCYVWRLLNHQTASELEPVHKFQAHNGH----ILRCLLSPDVKYLAT 232 (311)
T ss_pred ccCCCCCcceeeEEEcCCCcEEEEecCC----ccEEEEEccCCCccccceEhhheecccce----EEEEEECCCCcEEEe
Confidence 33 34445566 8899999999876643 35666665443 1222233221111100 001458999999999
Q ss_pred eeeecCCcceEEEEccCCCCCCCCCceeEEEecCCC-ceeEEeeccchhhhhceeeeecCCcceeeccCCCEEEEEEecC
Q 004475 369 KIKKENDEQIYILLNGRGFTPEGNIPFLDLFDINTG-SKERIWESNREKYFETAVALVFGQGEEDINLNQLKILTSKESK 447 (751)
Q Consensus 369 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~ 447 (751)
.+.++ .+++|+.++- +......... .+ ...++||.||++|+ +.++.
T Consensus 233 ~ssdk---------------------tv~iwn~~~~~kle~~l~gh~--------rW---vWdc~FS~dg~Ylv-Tassd 279 (311)
T KOG0315|consen 233 CSSDK---------------------TVKIWNTDDFFKLELVLTGHQ--------RW---VWDCAFSADGEYLV-TASSD 279 (311)
T ss_pred ecCCc---------------------eEEEEecCCceeeEEEeecCC--------ce---EEeeeeccCccEEE-ecCCC
Confidence 88442 6777777654 2222222111 11 12378999998665 44444
Q ss_pred CCCCeEEEEEcCCCceeE
Q 004475 448 TEITQYHILSWPLKKSSQ 465 (751)
Q Consensus 448 ~~~~~l~~~~~~~g~~~~ 465 (751)
. ...++++..+++.+
T Consensus 280 ~---~~rlW~~~~~k~v~ 294 (311)
T KOG0315|consen 280 H---TARLWDLSAGKEVR 294 (311)
T ss_pred C---ceeecccccCceee
Confidence 2 34455666666543
No 159
>PRK05855 short chain dehydrogenase; Validated
Probab=99.20 E-value=2.6e-10 Score=128.82 Aligned_cols=211 Identities=15% Similarity=0.166 Sum_probs=120.6
Q ss_pred CCCceEEEEEEcCCCCCCCCCCCccEEEEEcCCCCcCcccCCcccCCCCccCCCCchHHHHHHhCCeEEEEcCCCCCCCC
Q 004475 489 KDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGPSIPIIGE 568 (751)
Q Consensus 489 ~~~~~i~~~~~~P~~~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~v~~~~~~~~~g~ 568 (751)
.+|..+....+-+.+ .|+||++||.+. +...|. .....| .+||.|++ ++.+|+
T Consensus 10 ~~g~~l~~~~~g~~~--------~~~ivllHG~~~-----------~~~~w~----~~~~~L-~~~~~Vi~---~D~~G~ 62 (582)
T PRK05855 10 SDGVRLAVYEWGDPD--------RPTVVLVHGYPD-----------NHEVWD----GVAPLL-ADRFRVVA---YDVRGA 62 (582)
T ss_pred eCCEEEEEEEcCCCC--------CCeEEEEcCCCc-----------hHHHHH----HHHHHh-hcceEEEE---ecCCCC
Confidence 467777766653321 478999999631 111111 223334 68999999 666788
Q ss_pred CCCCCCc----hhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhC--CCceeEEEEccCCCCCC---
Q 004475 569 GDKLPND----RFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHA--PHLFCCGIARSGSYNKT--- 639 (751)
Q Consensus 569 g~~~~~~----~~~~~~~~d~~~~v~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~--p~~~~~~v~~~~~~d~~--- 639 (751)
|.+.... ....+..+|+..+++.+. . ..++.|+||||||.+++.++... ++.+..+++.++.....
T Consensus 63 G~S~~~~~~~~~~~~~~a~dl~~~i~~l~----~-~~~~~lvGhS~Gg~~a~~~a~~~~~~~~v~~~~~~~~~~~~~~~~ 137 (582)
T PRK05855 63 GRSSAPKRTAAYTLARLADDFAAVIDAVS----P-DRPVHLLAHDWGSIQGWEAVTRPRAAGRIASFTSVSGPSLDHVGF 137 (582)
T ss_pred CCCCCCCcccccCHHHHHHHHHHHHHHhC----C-CCcEEEEecChHHHHHHHHHhCccchhhhhhheeccCCchHHHHH
Confidence 7764322 235667777777777652 1 23599999999999998777653 33444333333221000
Q ss_pred -----C---CccCcc---cc-----------------------cccchhh-------------------------HHHHH
Q 004475 640 -----L---TPFGFQ---TE-----------------------FRTLWEA-------------------------TNVYI 660 (751)
Q Consensus 640 -----~---~~~~~~---~~-----------------------~~~~~~~-------------------------~~~~~ 660 (751)
. .+.... .. ....+.. ...+.
T Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (582)
T PRK05855 138 WLRSGLRRPTPRRLARALGQLLRSWYIYLFHLPVLPELLWRLGLGRAWPRLLRRVEGTPVDPIPTQTTLSDGAHGVKLYR 217 (582)
T ss_pred HHhhcccccchhhhhHHHHHHhhhHHHHHHhCCCCcHHHhccchhhHHHHhhhhccCCCcchhhhhhhhccccchHHHHH
Confidence 0 000000 00 0000000 00000
Q ss_pred hc----CcccccCCCCCCEEEEEcCCCCCCCCChHHHHHHHHHHHhCCCcEEEEEeCCCCCcCCccccHHHHHHHHHHHH
Q 004475 661 EM----SPITHANKIKKPILIIHGEVDDKVGLFPMQAERFFDALKGHGALSRLVLLPFEHHVYAARENVMHVIWETDRWL 736 (751)
Q Consensus 661 ~~----~~~~~~~~~~~P~li~~G~~D~~vp~~~~~~~~~~~~l~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~fl 736 (751)
.. .....+..+++|+|+++|++|..+| ......+.+.+. ..++++++ ++|... .+....+...+.+|+
T Consensus 218 ~~~~~~~~~~~~~~~~~P~lii~G~~D~~v~--~~~~~~~~~~~~----~~~~~~~~-~gH~~~-~e~p~~~~~~i~~fl 289 (582)
T PRK05855 218 ANMIRSLSRPRERYTDVPVQLIVPTGDPYVR--PALYDDLSRWVP----RLWRREIK-AGHWLP-MSHPQVLAAAVAEFV 289 (582)
T ss_pred hhhhhhhccCccCCccCceEEEEeCCCcccC--HHHhccccccCC----cceEEEcc-CCCcch-hhChhHHHHHHHHHH
Confidence 00 0001133478999999999999998 777766654432 34677776 589876 566778889999999
Q ss_pred HHH
Q 004475 737 QKY 739 (751)
Q Consensus 737 ~~~ 739 (751)
...
T Consensus 290 ~~~ 292 (582)
T PRK05855 290 DAV 292 (582)
T ss_pred Hhc
Confidence 864
No 160
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.20 E-value=1.1e-09 Score=106.17 Aligned_cols=174 Identities=15% Similarity=0.188 Sum_probs=108.9
Q ss_pred eEEEEEcCCCC---ceecCCC-ceEEeeeeCCCCceEEEEEecCCcccccccCCCceeEEEEeCCCceeeeeccCCCCCC
Q 004475 157 AQLVLGSLDGT---AKDFGTP-AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAED 232 (751)
Q Consensus 157 ~~l~~~~~~G~---~~~lt~~-~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~ 232 (751)
.-+|.+..++. ..++..+ ..+..+.||||.++|+.-..+ ..+.+||+++++.+.++....
T Consensus 248 aiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDdryLlaCg~~-------------e~~~lwDv~tgd~~~~y~~~~--- 311 (519)
T KOG0293|consen 248 AIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDDRYLLACGFD-------------EVLSLWDVDTGDLRHLYPSGL--- 311 (519)
T ss_pred EEEEEEecCcceeeeeeeecccCceEEEEECCCCCeEEecCch-------------HheeeccCCcchhhhhcccCc---
Confidence 45777766664 2334444 778899999999999865433 248899999998887655431
Q ss_pred CCCccCCccCCCceeeeecCCCceEEEEEeccCCCCccccCcccceeeccCCCCCCCCceEeEee-ceeEE-EEEecCCc
Q 004475 233 IPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKL-DLRFS-VSWCDDSL 310 (751)
Q Consensus 233 ~~~~~~~~~~~~~~~~~spdG~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~-~~~~~-~~~spdg~ 310 (751)
...+.+++|-|||.+ ++..+ .+..++.++++ |.....-... ...+. ++.++||+
T Consensus 312 --------~~S~~sc~W~pDg~~-~V~Gs------------~dr~i~~wdlD---gn~~~~W~gvr~~~v~dlait~Dgk 367 (519)
T KOG0293|consen 312 --------GFSVSSCAWCPDGFR-FVTGS------------PDRTIIMWDLD---GNILGNWEGVRDPKVHDLAITYDGK 367 (519)
T ss_pred --------CCCcceeEEccCCce-eEecC------------CCCcEEEecCC---cchhhcccccccceeEEEEEcCCCc
Confidence 123458899999999 44422 23578888886 4221111111 12345 88999999
Q ss_pred eEEEeeeecccceeEEEecCCCCCCcceeeee-cccccccCCCCCCCeeeCCCCCEEEEeeeecCCcceEEEEccCCCCC
Q 004475 311 ALVNETWYKTSQTRTWLVCPGSKDVAPRVLFD-RVFENVYSDPGSPMMTRTSTGTNVIAKIKKENDEQIYILLNGRGFTP 389 (751)
Q Consensus 311 ~l~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~spDG~~l~~~~~~~~~~~~~~~~~~~~~~~ 389 (751)
+++.... ..++.+++.++. .....+.. ..+.. ++.|-||++++..-.
T Consensus 368 ~vl~v~~----d~~i~l~~~e~~-~dr~lise~~~its---------~~iS~d~k~~LvnL~------------------ 415 (519)
T KOG0293|consen 368 YVLLVTV----DKKIRLYNREAR-VDRGLISEEQPITS---------FSISKDGKLALVNLQ------------------ 415 (519)
T ss_pred EEEEEec----ccceeeechhhh-hhhccccccCceeE---------EEEcCCCcEEEEEcc------------------
Confidence 9876552 246666776653 11112221 22222 678999998777662
Q ss_pred CCCCceeEEEecCCCc
Q 004475 390 EGNIPFLDLFDINTGS 405 (751)
Q Consensus 390 ~~~~~~l~~~d~~~g~ 405 (751)
...+.+||++...
T Consensus 416 ---~qei~LWDl~e~~ 428 (519)
T KOG0293|consen 416 ---DQEIHLWDLEENK 428 (519)
T ss_pred ---cCeeEEeecchhh
Confidence 2368888987443
No 161
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=99.19 E-value=8.9e-09 Score=101.73 Aligned_cols=274 Identities=14% Similarity=0.124 Sum_probs=168.5
Q ss_pred cccccceeecCCCCeEEEEEeecccccccCCceeEEEEEcCCCCeeeccCCCCccccceeeeeEEecCCcEEEEeecCCC
Q 004475 30 GAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSR 109 (751)
Q Consensus 30 ~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~~~~~l~i~~~~~g~~~~lt~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~ 109 (751)
...++...|+-||..||+- ...+.+.+++..|+...-|-.+.. .+..+.|+-+|.+|+....+
T Consensus 235 nkdVT~L~Wn~~G~~LatG----------~~~G~~riw~~~G~l~~tl~~Hkg-----PI~slKWnk~G~yilS~~vD-- 297 (524)
T KOG0273|consen 235 NKDVTSLDWNNDGTLLATG----------SEDGEARIWNKDGNLISTLGQHKG-----PIFSLKWNKKGTYILSGGVD-- 297 (524)
T ss_pred cCCcceEEecCCCCeEEEe----------ecCcEEEEEecCchhhhhhhccCC-----ceEEEEEcCCCCEEEeccCC--
Confidence 3467899999999999995 345677788877877777755554 37789999999999876332
Q ss_pred CCCCCCCCCCCCCceeeccccccccchhhhhccCCccchhhhhhheeeEEEEEcC-CCCceec-CCC-ceEEeeeeCCCC
Q 004475 110 RDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DGTAKDF-GTP-AVYTAVEPSPDQ 186 (751)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~G~~~~l-t~~-~~~~~~~~SpDG 186 (751)
..+.++|. +|+..+. +.+ ..-.++.|--+.
T Consensus 298 -----------------------------------------------~ttilwd~~~g~~~q~f~~~s~~~lDVdW~~~~ 330 (524)
T KOG0273|consen 298 -----------------------------------------------GTTILWDAHTGTVKQQFEFHSAPALDVDWQSND 330 (524)
T ss_pred -----------------------------------------------ccEEEEeccCceEEEeeeeccCCccceEEecCc
Confidence 35677888 7854443 333 222467776555
Q ss_pred ceEEEEEecCCcccccccCCCceeEEEEeCCCceee-eeccCCCCCCCCCccCCccCCCceeeeecCCCceEEEEEeccC
Q 004475 187 KYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVR-ELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDR 265 (751)
Q Consensus 187 ~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~spdG~~~i~~~~~~~~ 265 (751)
++ +.... ...|+++.++.+.+. .+.. ....+..+.|.|.|+- |+-++
T Consensus 331 ~F-~ts~t-------------d~~i~V~kv~~~~P~~t~~G-------------H~g~V~alk~n~tg~L-LaS~S---- 378 (524)
T KOG0273|consen 331 EF-ATSST-------------DGCIHVCKVGEDRPVKTFIG-------------HHGEVNALKWNPTGSL-LASCS---- 378 (524)
T ss_pred eE-eecCC-------------CceEEEEEecCCCcceeeec-------------ccCceEEEEECCCCce-EEEec----
Confidence 43 22221 234667766544332 2222 2233568999999986 45444
Q ss_pred CCCccccCcccceeeccCCCCCCCCceEeEeeceeEE-EEEecCCce---------EEEeeeecccceeEEEecCCCCCC
Q 004475 266 GDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFS-VSWCDDSLA---------LVNETWYKTSQTRTWLVCPGSKDV 335 (751)
Q Consensus 266 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~-~~~spdg~~---------l~~~~~~~~~~~~l~~~~~~~~~~ 335 (751)
....|-++.... +.....+..+...+. ..|||+|.. |+..+ ..+.+-+.|...+
T Consensus 379 --------dD~TlkiWs~~~--~~~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas----~dstV~lwdv~~g-- 442 (524)
T KOG0273|consen 379 --------DDGTLKIWSMGQ--SNSVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASAS----FDSTVKLWDVESG-- 442 (524)
T ss_pred --------CCCeeEeeecCC--CcchhhhhhhccceeeEeecCCCCccCCCcCCceEEEee----cCCeEEEEEccCC--
Confidence 334666666531 233444445554555 889998763 22222 2345666677664
Q ss_pred cceeeeecccccccCCCCCCCeeeCCCCCEEEEeeeecCCcceEEEEccCCCCCCCCCceeEEEecCCCceeEEeeccch
Q 004475 336 APRVLFDRVFENVYSDPGSPMMTRTSTGTNVIAKIKKENDEQIYILLNGRGFTPEGNIPFLDLFDINTGSKERIWESNRE 415 (751)
Q Consensus 336 ~~~~l~~~~~~~~~~~~~~~~~~~spDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~ 415 (751)
.+..........++. ++|||||++|+..+.++ .|..|+.++++..+-...+..
T Consensus 443 v~i~~f~kH~~pVys------vafS~~g~ylAsGs~dg---------------------~V~iws~~~~~l~~s~~~~~~ 495 (524)
T KOG0273|consen 443 VPIHTLMKHQEPVYS------VAFSPNGRYLASGSLDG---------------------CVHIWSTKTGKLVKSYQGTGG 495 (524)
T ss_pred ceeEeeccCCCceEE------EEecCCCcEEEecCCCC---------------------eeEeccccchheeEeecCCCe
Confidence 223333344455555 89999999999988432 678889988876544443321
Q ss_pred hhhhceeeeecCCcceeeccCCCEEEEEEecCCCCCeEEEEEc
Q 004475 416 KYFETAVALVFGQGEEDINLNQLKILTSKESKTEITQYHILSW 458 (751)
Q Consensus 416 ~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~l~~~~~ 458 (751)
. ....|+.+|+.|....+. ..+.++|+
T Consensus 496 -----I-------fel~Wn~~G~kl~~~~sd----~~vcvldl 522 (524)
T KOG0273|consen 496 -----I-------FELCWNAAGDKLGACASD----GSVCVLDL 522 (524)
T ss_pred -----E-------EEEEEcCCCCEEEEEecC----CCceEEEe
Confidence 1 125789999887766532 23555554
No 162
>PF03583 LIP: Secretory lipase ; InterPro: IPR005152 This entry represents a family of secreted lipases. Family members include the LIP lipases from Candida albicans, which are expressed and secreted during the infection cycle of these pathogens [].; GO: 0004806 triglyceride lipase activity, 0016042 lipid catabolic process
Probab=99.18 E-value=1.4e-09 Score=108.50 Aligned_cols=191 Identities=24% Similarity=0.221 Sum_probs=117.4
Q ss_pred hHHHHHHhCCeEEEEcCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHHHHcCCC-CCCcEEEEEeChHHHHHHHHHHhC-
Q 004475 545 TSSLIFLARRFAVLAGPSIPIIGEGDKLPNDRFVEQLVSSAEAAVEEVVRRGVA-DPSRIAVGGHSYGAFMTAHLLAHA- 622 (751)
Q Consensus 545 ~~~~~~~~~G~~v~~~~~~~~~g~g~~~~~~~~~~~~~~d~~~~v~~l~~~~~i-d~~~i~l~G~S~GG~~a~~~a~~~- 622 (751)
.....++++||+|+++|| .|.|............+-|..++.+.+.....+ ...+|+++|+|.||+.+++++...
T Consensus 17 ~~l~~~L~~GyaVv~pDY---~Glg~~y~~~~~~a~avLD~vRAA~~~~~~~gl~~~~~v~l~GySqGG~Aa~~AA~l~~ 93 (290)
T PF03583_consen 17 PFLAAWLARGYAVVAPDY---EGLGTPYLNGRSEAYAVLDAVRAARNLPPKLGLSPSSRVALWGYSQGGQAALWAAELAP 93 (290)
T ss_pred HHHHHHHHCCCEEEecCC---CCCCCcccCcHhHHHHHHHHHHHHHhcccccCCCCCCCEEEEeeCccHHHHHHHHHHhH
Confidence 345578899999999555 455553322222233344444554444332122 246899999999999998887543
Q ss_pred ---CCc---eeEEEEccCCCCCCCC-------cc---------C----ccccc---c-----------------------
Q 004475 623 ---PHL---FCCGIARSGSYNKTLT-------PF---------G----FQTEF---R----------------------- 650 (751)
Q Consensus 623 ---p~~---~~~~v~~~~~~d~~~~-------~~---------~----~~~~~---~----------------------- 650 (751)
|+. +.++++.++..|.... .. + ++... .
T Consensus 94 ~YApeL~~~l~Gaa~gg~~~dl~~~~~~~~~~~~~g~~~~~l~gl~~~yP~l~~~~~~~l~~~g~~~~~~~~~~c~~~~~ 173 (290)
T PF03583_consen 94 SYAPELNRDLVGAAAGGPPADLAALLRALNGGPFAGLVPYALLGLAAAYPELDELLDSYLTPEGRALLDDARTRCLADIV 173 (290)
T ss_pred HhCcccccceeEEeccCCccCHHHHHhccCCCccHhHHHHHHHHHHHhCccHHHHHHHHhhHHHHHHHHHHHhhhHHHHH
Confidence 554 6888887776551100 00 0 00000 0
Q ss_pred ------cc--------------hhhH---HHHHhcCc-ccccCCCCCCEEEEEcCCCCCCCCChHHHHHHHHHHHhCC-C
Q 004475 651 ------TL--------------WEAT---NVYIEMSP-ITHANKIKKPILIIHGEVDDKVGLFPMQAERFFDALKGHG-A 705 (751)
Q Consensus 651 ------~~--------------~~~~---~~~~~~~~-~~~~~~~~~P~li~~G~~D~~vp~~~~~~~~~~~~l~~~~-~ 705 (751)
.. ...+ ..+.+.+. ...-..-+.|++|.||..|.+|| +..+.++++.+.++| .
T Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~P~~Pv~i~~g~~D~vvP--~~~~~~l~~~~c~~G~a 251 (290)
T PF03583_consen 174 AEYAFQDLFTGDTRYFKPGADLLADPAFRRALAENSLGMGGDWTPTVPVLIYQGTADEVVP--PADTDALVAKWCAAGGA 251 (290)
T ss_pred HHhhhccccccchhccCChhhhhhhHHHHHHHHHhhccccCCCCCCCCEEEEecCCCCCCC--hHHHHHHHHHHHHcCCC
Confidence 00 0000 00111111 00011225899999999999999 999999999999999 8
Q ss_pred cEEEEEeCCCCCcCCccccHHHHHHHHHHHHHHHhcCCC
Q 004475 706 LSRLVLLPFEHHVYAARENVMHVIWETDRWLQKYCLSNT 744 (751)
Q Consensus 706 ~~~~~~~~~~~H~~~~~~~~~~~~~~~~~fl~~~l~~~~ 744 (751)
+++++.+++.+|.... .......+.||...|...+
T Consensus 252 ~V~~~~~~~~~H~~~~----~~~~~~a~~Wl~~rf~G~~ 286 (290)
T PF03583_consen 252 DVEYVRYPGGGHLGAA----FASAPDALAWLDDRFAGKP 286 (290)
T ss_pred CEEEEecCCCChhhhh----hcCcHHHHHHHHHHHCCCC
Confidence 9999999999997532 2234677899999997544
No 163
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.18 E-value=9e-09 Score=107.41 Aligned_cols=280 Identities=14% Similarity=0.154 Sum_probs=165.7
Q ss_pred cccceeecCCCCeEEEEEeecccccccCCceeEEEEEcCCCC-eeeccCCCCccccceeeeeEEecCCcEEEEeecCCCC
Q 004475 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGE-AKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRR 110 (751)
Q Consensus 32 ~~~~p~~SPDG~~iaf~~~~~~~~~~~~~~~~l~i~~~~~g~-~~~lt~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~ 110 (751)
.+...+.||||+.||.-. ..+.|.|+|..+|= ....+.+.. ++..+.|+.+|+.|+..+.+
T Consensus 352 ~i~~l~YSpDgq~iaTG~----------eDgKVKvWn~~SgfC~vTFteHts-----~Vt~v~f~~~g~~llssSLD--- 413 (893)
T KOG0291|consen 352 RITSLAYSPDGQLIATGA----------EDGKVKVWNTQSGFCFVTFTEHTS-----GVTAVQFTARGNVLLSSSLD--- 413 (893)
T ss_pred ceeeEEECCCCcEEEecc----------CCCcEEEEeccCceEEEEeccCCC-----ceEEEEEEecCCEEEEeecC---
Confidence 578899999999999942 33556666765553 233333222 57899999999988877554
Q ss_pred CCCCCCCCCCCCceeeccccccccchhhhhccCCccchhhhhhheeeEEEEEcC-CC-CceecCCC--ceEEeeeeCCCC
Q 004475 111 DPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DG-TAKDFGTP--AVYTAVEPSPDQ 186 (751)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~G-~~~~lt~~--~~~~~~~~SpDG 186 (751)
+.+..+|+ .+ .-+.+|.+ .....++..|-|
T Consensus 414 ----------------------------------------------GtVRAwDlkRYrNfRTft~P~p~QfscvavD~sG 447 (893)
T KOG0291|consen 414 ----------------------------------------------GTVRAWDLKRYRNFRTFTSPEPIQFSCVAVDPSG 447 (893)
T ss_pred ----------------------------------------------CeEEeeeecccceeeeecCCCceeeeEEEEcCCC
Confidence 35566676 34 55666666 445567777778
Q ss_pred ceEEEEEecCCcccccccCCCceeEEEEeCCCceeee-eccCCCCCCCCCccCCccCCCceeeeecCCCceEEEEEeccC
Q 004475 187 KYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRE-LCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDR 265 (751)
Q Consensus 187 ~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~-l~~~~~~~~~~~~~~~~~~~~~~~~~spdG~~~i~~~~~~~~ 265 (751)
..+...+.+ ..+|++|+..+|++.. |..+++. +.+++|+|+|+. |+-.+
T Consensus 448 elV~AG~~d------------~F~IfvWS~qTGqllDiLsGHEgP-------------Vs~l~f~~~~~~-LaS~S---- 497 (893)
T KOG0291|consen 448 ELVCAGAQD------------SFEIFVWSVQTGQLLDILSGHEGP-------------VSGLSFSPDGSL-LASGS---- 497 (893)
T ss_pred CEEEeeccc------------eEEEEEEEeecCeeeehhcCCCCc-------------ceeeEEccccCe-EEecc----
Confidence 765544322 4689999999887543 3333333 457899999996 55543
Q ss_pred CCCccccCcccceeeccCCCCCCCCceEeEeeceeEE-EEEecCCceEEEeeeecccceeEEEecCC-------------
Q 004475 266 GDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFS-VSWCDDSLALVNETWYKTSQTRTWLVCPG------------- 331 (751)
Q Consensus 266 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~-~~~spdg~~l~~~~~~~~~~~~l~~~~~~------------- 331 (751)
+...+.+|++=.. .+..+++. ....+. ++|+|||+.|+.++-. ++..+|-....
T Consensus 498 --------WDkTVRiW~if~s-~~~vEtl~-i~sdvl~vsfrPdG~elaVaTld--gqItf~d~~~~~q~~~IdgrkD~~ 565 (893)
T KOG0291|consen 498 --------WDKTVRIWDIFSS-SGTVETLE-IRSDVLAVSFRPDGKELAVATLD--GQITFFDIKEAVQVGSIDGRKDLS 565 (893)
T ss_pred --------ccceEEEEEeecc-CceeeeEe-eccceeEEEEcCCCCeEEEEEec--ceEEEEEhhhceeeccccchhhcc
Confidence 4456777776311 12333333 233344 8999999999987732 22233322211
Q ss_pred CCCCcceeeeecccccccCCCCCCCeeeCCCCCEEEEeeeecCCcceEEEEccCCCCCCCCCceeEEEecCCCceeEEee
Q 004475 332 SKDVAPRVLFDRVFENVYSDPGSPMMTRTSTGTNVIAKIKKENDEQIYILLNGRGFTPEGNIPFLDLFDINTGSKERIWE 411 (751)
Q Consensus 332 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~spDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l~~ 411 (751)
++.......+..+... ...--.+.+|+||+.|+... ..+.+.+|++.++-+-+.+.
T Consensus 566 ~gR~~~D~~ta~~sa~---~K~Ftti~ySaDG~~IlAgG---------------------~sn~iCiY~v~~~vllkkfq 621 (893)
T KOG0291|consen 566 GGRKETDRITAENSAK---GKTFTTICYSADGKCILAGG---------------------ESNSICIYDVPEGVLLKKFQ 621 (893)
T ss_pred ccccccceeehhhccc---CCceEEEEEcCCCCEEEecC---------------------CcccEEEEECchhheeeeEE
Confidence 1100001111111000 00001278999999887755 44588999998887666665
Q ss_pred ccchhhhhceeeeecCCcceeeccCCCEEEEEEecCCCCCeEEEEEc
Q 004475 412 SNREKYFETAVALVFGQGEEDINLNQLKILTSKESKTEITQYHILSW 458 (751)
Q Consensus 412 ~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~l~~~~~ 458 (751)
...+ -|.||-...+.....+..+.+-++|-
T Consensus 622 iS~N-----------------~sLdg~~efln~rkmtEfG~~~LiD~ 651 (893)
T KOG0291|consen 622 ISDN-----------------RSLDGVLEFLNRRKMTEFGNMDLIDT 651 (893)
T ss_pred eccc-----------------cchhHHHHHhccccccccCCcccccc
Confidence 4432 23344444455555666667777774
No 164
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.17 E-value=2.4e-09 Score=110.43 Aligned_cols=250 Identities=13% Similarity=0.175 Sum_probs=156.6
Q ss_pred ceeEEeecCCCCCCCCcccccCCCCcccccceeecCCCCeEEEEEeecccccccCCceeEEEEEcCCCCeeeccCCCCcc
Q 004475 5 TGIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDIC 84 (751)
Q Consensus 5 ~~~~~~~~~~~~~~g~~~~l~~~~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~~~~~l~i~~~~~g~~~~lt~~~~~~ 84 (751)
..+|+|+..+ |+.+.|..+. ...+....|+|||+.||.- ...+.|.|+|....+..+-..+. +
T Consensus 197 ~~vylW~~~s----~~v~~l~~~~-~~~vtSv~ws~~G~~LavG----------~~~g~v~iwD~~~~k~~~~~~~~-h- 259 (484)
T KOG0305|consen 197 QSVYLWSASS----GSVTELCSFG-EELVTSVKWSPDGSHLAVG----------TSDGTVQIWDVKEQKKTRTLRGS-H- 259 (484)
T ss_pred ceEEEEecCC----CceEEeEecC-CCceEEEEECCCCCEEEEe----------ecCCeEEEEehhhccccccccCC-c-
Confidence 4799999999 9999988654 3468999999999999984 34577788887654432222221 1
Q ss_pred ccceeeeeEEecCCcEEEEeecCCCCCCCCCCCCCCCCceeeccccccccchhhhhccCCccchhhhhhheeeEEEEEcC
Q 004475 85 LNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL 164 (751)
Q Consensus 85 ~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 164 (751)
...+..++|. +..+...+.+ ..|...|+
T Consensus 260 -~~rvg~laW~--~~~lssGsr~-------------------------------------------------~~I~~~dv 287 (484)
T KOG0305|consen 260 -ASRVGSLAWN--SSVLSSGSRD-------------------------------------------------GKILNHDV 287 (484)
T ss_pred -CceeEEEecc--CceEEEecCC-------------------------------------------------CcEEEEEE
Confidence 1146788997 4444443221 23444444
Q ss_pred -CC-C-ceecCCC-ceEEeeeeCCCCceEEEEEecCCcccccccCCCceeEEEEeCCCce-eeeeccCCCCCCCCCccCC
Q 004475 165 -DG-T-AKDFGTP-AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKL-VRELCDLPPAEDIPVCYNS 239 (751)
Q Consensus 165 -~G-~-~~~lt~~-~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~-~~~l~~~~~~~~~~~~~~~ 239 (751)
.. . ...+..+ ..+....|++||++++--.. .+.+++||....+ ...+..+.
T Consensus 288 R~~~~~~~~~~~H~qeVCgLkws~d~~~lASGgn-------------DN~~~Iwd~~~~~p~~~~~~H~----------- 343 (484)
T KOG0305|consen 288 RISQHVVSTLQGHRQEVCGLKWSPDGNQLASGGN-------------DNVVFIWDGLSPEPKFTFTEHT----------- 343 (484)
T ss_pred ecchhhhhhhhcccceeeeeEECCCCCeeccCCC-------------ccceEeccCCCccccEEEeccc-----------
Confidence 22 2 2224434 67889999999999986433 3468899984432 33333333
Q ss_pred ccCCCceeeeecCCCceEEEEEeccCCCCccccCcccceeeccCCCCCCCCceEeEeeceeEE-EEEecCCceEEEeeee
Q 004475 240 VREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFS-VSWCDDSLALVNETWY 318 (751)
Q Consensus 240 ~~~~~~~~~~spdG~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~-~~~spdg~~l~~~~~~ 318 (751)
..+..++|+|=.+.+|+.... . ....|..++.. .+...........+. +.||+..+-|+.+...
T Consensus 344 --aAVKA~awcP~q~~lLAsGGG-----s-----~D~~i~fwn~~---~g~~i~~vdtgsQVcsL~Wsk~~kEi~sthG~ 408 (484)
T KOG0305|consen 344 --AAVKALAWCPWQSGLLATGGG-----S-----ADRCIKFWNTN---TGARIDSVDTGSQVCSLIWSKKYKELLSTHGY 408 (484)
T ss_pred --eeeeEeeeCCCccCceEEcCC-----C-----cccEEEEEEcC---CCcEecccccCCceeeEEEcCCCCEEEEecCC
Confidence 335688999999984444221 1 23478888764 333333334455666 9999999999988865
Q ss_pred cccceeEEEecCCCCCCcceeeeecccccccCCCCCCCeeeCCCCCEEEEeeee
Q 004475 319 KTSQTRTWLVCPGSKDVAPRVLFDRVFENVYSDPGSPMMTRTSTGTNVIAKIKK 372 (751)
Q Consensus 319 ~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~spDG~~l~~~~~~ 372 (751)
....-.||.++.-. ....+..+... +.. +++||||..|+..+.+
T Consensus 409 s~n~i~lw~~ps~~---~~~~l~gH~~R-Vl~------la~SPdg~~i~t~a~D 452 (484)
T KOG0305|consen 409 SENQITLWKYPSMK---LVAELLGHTSR-VLY------LALSPDGETIVTGAAD 452 (484)
T ss_pred CCCcEEEEeccccc---eeeeecCCcce-eEE------EEECCCCCEEEEeccc
Confidence 55556788776522 11222222211 222 7899999999998844
No 165
>PF03403 PAF-AH_p_II: Platelet-activating factor acetylhydrolase, isoform II; PDB: 3F98_B 3F97_B 3D59_A 3F96_A 3D5E_B 3F9C_A.
Probab=99.17 E-value=6.7e-10 Score=114.75 Aligned_cols=187 Identities=18% Similarity=0.158 Sum_probs=102.6
Q ss_pred CCccEEEEEcCCCCcCcccCCcccCCCCccCCCCchHHHHHHhCCeEEEEcCCCCCCCCCC-----C-----C-------
Q 004475 510 GPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGPSIPIIGEGD-----K-----L------- 572 (751)
Q Consensus 510 ~~~P~vv~~HGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~v~~~~~~~~~g~g~-----~-----~------- 572 (751)
+++|+|||.||.+ +....+...+..||++||+|++++.++..+... . .
T Consensus 98 ~~~PvvIFSHGlg---------------g~R~~yS~~~~eLAS~GyVV~aieHrDgSa~~t~~~~~~~~~~~~~~~~~~~ 162 (379)
T PF03403_consen 98 GKFPVVIFSHGLG---------------GSRTSYSAICGELASHGYVVAAIEHRDGSAPATYFMRDGSGAEVEPYVVEYL 162 (379)
T ss_dssp S-EEEEEEE--TT-----------------TTTTHHHHHHHHHTT-EEEEE---SS-SSEEEE-SSHHHHHHT-------
T ss_pred CCCCEEEEeCCCC---------------cchhhHHHHHHHHHhCCeEEEEeccCCCceeEEEeccCCCcccccccccccc
Confidence 4599999999963 223334577889999999999977766543210 0 0
Q ss_pred -------C----Cchh------HHHHHHHHHHHHHHHHHc--------------------CCCCCCcEEEEEeChHHHHH
Q 004475 573 -------P----NDRF------VEQLVSSAEAAVEEVVRR--------------------GVADPSRIAVGGHSYGAFMT 615 (751)
Q Consensus 573 -------~----~~~~------~~~~~~d~~~~v~~l~~~--------------------~~id~~~i~l~G~S~GG~~a 615 (751)
. ...+ ...-..|+..+++.|.+. +.+|.++|+++|||+||..+
T Consensus 163 ~~~~~~~~~~~~~~~~~~R~~QL~~R~~Ei~~~l~~L~~i~~G~~~~~~l~~~~~l~~~~grlD~~~i~~~GHSFGGATa 242 (379)
T PF03403_consen 163 EEEWIPLRDFDPEEEFELRNAQLRQRVAEIQFVLDALEEINSGDPVENVLPSSFDLSQFKGRLDLSRIGLAGHSFGGATA 242 (379)
T ss_dssp --EEEE-----GGGHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-----SS--SS-GGGGTT-EEEEEEEEEEETHHHHHH
T ss_pred ccceeccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccccccCCccCHHHHhhhcchhheeeeecCchHHHH
Confidence 0 0000 111246677777777641 23567889999999999999
Q ss_pred HHHHHhCCCceeEEEEccCCCCCCCCccCcccccccchhhHHHHHhcCcccccCCCCCCEEEEEcCCCCCCCCChHHHHH
Q 004475 616 AHLLAHAPHLFCCGIARSGSYNKTLTPFGFQTEFRTLWEATNVYIEMSPITHANKIKKPILIIHGEVDDKVGLFPMQAER 695 (751)
Q Consensus 616 ~~~a~~~p~~~~~~v~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~li~~G~~D~~vp~~~~~~~~ 695 (751)
+.++.+. .+++++|++.|..-.. . .+ ....++.|+|+|+.+. ... ......
T Consensus 243 ~~~l~~d-~r~~~~I~LD~W~~Pl----~--~~------------------~~~~i~~P~L~InSe~-f~~---~~~~~~ 293 (379)
T PF03403_consen 243 LQALRQD-TRFKAGILLDPWMFPL----G--DE------------------IYSKIPQPLLFINSES-FQW---WENIFR 293 (379)
T ss_dssp HHHHHH--TT--EEEEES---TTS-------GG------------------GGGG--S-EEEEEETT-T-----HHHHHH
T ss_pred HHHHhhc-cCcceEEEeCCcccCC----C--cc------------------cccCCCCCEEEEECcc-cCC---hhhHHH
Confidence 9988888 7899999999864211 0 00 0134678999999875 332 233333
Q ss_pred HHHHHHhCCCcEEEEEeCCCCCcCCc-----cc-------------c----HHHHHHHHHHHHHHHhc
Q 004475 696 FFDALKGHGALSRLVLLPFEHHVYAA-----RE-------------N----VMHVIWETDRWLQKYCL 741 (751)
Q Consensus 696 ~~~~l~~~~~~~~~~~~~~~~H~~~~-----~~-------------~----~~~~~~~~~~fl~~~l~ 741 (751)
+.+ +........+..+.|+.|.-.. .+ . .+...+.+++||+++|+
T Consensus 294 ~~~-~~~~~~~~~~~ti~gt~H~s~sD~~ll~P~~l~~~~~~~g~~dp~~a~~i~~~~~l~FL~~~L~ 360 (379)
T PF03403_consen 294 MKK-VISNNKESRMLTIKGTAHLSFSDFPLLSPWLLGKFLGLKGSIDPERALRINNRASLAFLRRHLG 360 (379)
T ss_dssp HHT-T--TTS-EEEEEETT--GGGGSGGGGTS-HHHHHHTTSS-SS-HHHHHHHHHHHHHHHHHHHHT
T ss_pred HHH-HhccCCCcEEEEECCCcCCCcchhhhhhHHHHHHHhccccCcCHHHHHHHHHHHHHHHHHHhcC
Confidence 333 3334456789999999995211 00 1 23346678999999987
No 166
>PRK13616 lipoprotein LpqB; Provisional
Probab=99.17 E-value=1.5e-09 Score=118.09 Aligned_cols=172 Identities=15% Similarity=0.168 Sum_probs=108.7
Q ss_pred cccceeecCCCCeEEEEEeecccccccCCceeEEEEEcCCCCeeeccCCCCccccceeeeeEEecCCcEEEEeecCCCCC
Q 004475 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRD 111 (751)
Q Consensus 32 ~~~~p~~SPDG~~iaf~~~~~~~~~~~~~~~~l~i~~~~~g~~~~lt~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~ 111 (751)
.+.+|++||||+++||+..... ...++..+||+.+. +++.+++|.+.. ...+.|||||++|+|.+......
T Consensus 351 ~vsspaiSpdG~~vA~v~~~~~--~~~d~~s~Lwv~~~-gg~~~~lt~g~~------~t~PsWspDG~~lw~v~dg~~~~ 421 (591)
T PRK13616 351 NITSAALSRSGRQVAAVVTLGR--GAPDPASSLWVGPL-GGVAVQVLEGHS------LTRPSWSLDADAVWVVVDGNTVV 421 (591)
T ss_pred CcccceECCCCCEEEEEEeecC--CCCCcceEEEEEeC-CCcceeeecCCC------CCCceECCCCCceEEEecCcceE
Confidence 5789999999999999986332 12246689999996 666788887653 46789999999999985421100
Q ss_pred CCCCCCCCCCCceeeccccccccchhhhhccCCccchhhhhhheeeEEEEEcCCC-CceecCCCceEEeeeeCCCCceEE
Q 004475 112 PPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSLDG-TAKDFGTPAVYTAVEPSPDQKYVL 190 (751)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~G-~~~~lt~~~~~~~~~~SpDG~~i~ 190 (751)
. ... .....++|++++++ +.++ .-...+.++.|||||++|+
T Consensus 422 ~-------------v~~------------------------~~~~gql~~~~vd~ge~~~-~~~g~Issl~wSpDG~RiA 463 (591)
T PRK13616 422 R-------------VIR------------------------DPATGQLARTPVDASAVAS-RVPGPISELQLSRDGVRAA 463 (591)
T ss_pred E-------------Eec------------------------cCCCceEEEEeccCchhhh-ccCCCcCeEEECCCCCEEE
Confidence 0 000 00125899999854 5554 2236788999999999999
Q ss_pred EEEecCCcccccccCCCceeEEE---EeCCCceeeeeccCCCCCCCCCccCCccCC-CceeeeecCCCceEEEEEeccCC
Q 004475 191 ITSMHRPYSYKVPCARFSQKVQV---WTTDGKLVRELCDLPPAEDIPVCYNSVREG-MRSISWRADKPSTLYWVEAQDRG 266 (751)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~l~~---~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~-~~~~~~spdG~~~i~~~~~~~~~ 266 (751)
|... .+|++ ...++++ ..|+... .+...... ...+.|.+|+.- ++..+ +
T Consensus 464 ~i~~--------------g~v~Va~Vvr~~~G~-~~l~~~~-------~l~~~l~~~~~~l~W~~~~~L-~V~~~---~- 516 (591)
T PRK13616 464 MIIG--------------GKVYLAVVEQTEDGQ-YALTNPR-------EVGPGLGDTAVSLDWRTGDSL-VVGRS---D- 516 (591)
T ss_pred EEEC--------------CEEEEEEEEeCCCCc-eeecccE-------EeecccCCccccceEecCCEE-EEEec---C-
Confidence 9862 14565 5545554 3332210 01111111 246799999983 43322 1
Q ss_pred CCccccCcccceeeccCC
Q 004475 267 DANVEVSPRDIIYTQPAE 284 (751)
Q Consensus 267 ~~~~~~~~~~~l~~~~~~ 284 (751)
....++.++++
T Consensus 517 -------~~~~v~~v~vD 527 (591)
T PRK13616 517 -------PEHPVWYVNLD 527 (591)
T ss_pred -------CCCceEEEecC
Confidence 12358888886
No 167
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.15 E-value=2e-09 Score=100.81 Aligned_cols=151 Identities=13% Similarity=0.261 Sum_probs=95.6
Q ss_pred ccceeecCCCCeEEEEEee--cccccccCCceeEEEEEcCCCCeeeccCCCCccccceeeeeEEecCCcEEEEeecCCCC
Q 004475 33 INFVSWSPDGKRIAFSVRV--DEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRR 110 (751)
Q Consensus 33 ~~~p~~SPDG~~iaf~~~~--~~~~~~~~~~~~l~i~~~~~g~~~~lt~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~ 110 (751)
.....|+|+|++|++...+ ++.....-+..+||.++..+.....+.-.... .+..++|||+|+.++......
T Consensus 8 ~~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~----~I~~~~WsP~g~~favi~g~~-- 81 (194)
T PF08662_consen 8 DAKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEG----PIHDVAWSPNGNEFAVIYGSM-- 81 (194)
T ss_pred eEEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCC----ceEEEEECcCCCEEEEEEccC--
Confidence 3457899999999998863 21111123467999998877665555322221 378999999999988763210
Q ss_pred CCCCCCCCCCCCceeeccccccccchhhhhccCCccchhhhhhheeeEEEEEcCCCC-ceecCCCceEEeeeeCCCCceE
Q 004475 111 DPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSLDGT-AKDFGTPAVYTAVEPSPDQKYV 189 (751)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~G~-~~~lt~~~~~~~~~~SpDG~~i 189 (751)
...+.++++.++ ...+. ......+.|||+|++|
T Consensus 82 ---------------------------------------------~~~v~lyd~~~~~i~~~~-~~~~n~i~wsP~G~~l 115 (194)
T PF08662_consen 82 ---------------------------------------------PAKVTLYDVKGKKIFSFG-TQPRNTISWSPDGRFL 115 (194)
T ss_pred ---------------------------------------------CcccEEEcCcccEeEeec-CCCceEEEECCCCCEE
Confidence 024555565552 23332 2344578999999999
Q ss_pred EEEEecCCcccccccCCCceeEEEEeCCCceeeeeccCCCCCCCCCccCCccCCCceeeeecCCCceEEE
Q 004475 190 LITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYW 259 (751)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~spdG~~~i~~ 259 (751)
++....+ ...+|.+||.+..+....... .....+.|||||++++..
T Consensus 116 ~~~g~~n----------~~G~l~~wd~~~~~~i~~~~~--------------~~~t~~~WsPdGr~~~ta 161 (194)
T PF08662_consen 116 VLAGFGN----------LNGDLEFWDVRKKKKISTFEH--------------SDATDVEWSPDGRYLATA 161 (194)
T ss_pred EEEEccC----------CCcEEEEEECCCCEEeecccc--------------CcEEEEEEcCCCCEEEEE
Confidence 9976432 246789999985543321111 123478999999994444
No 168
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=99.11 E-value=1.3e-07 Score=95.28 Aligned_cols=291 Identities=14% Similarity=0.092 Sum_probs=146.7
Q ss_pred ceeEEEEEcCCCCeeeccCCCCccccceeeeeEEecCCcEEEEeec-CCCCCCCCCCCCCCCCceeeccccccccchhhh
Q 004475 61 KLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIP-SSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTD 139 (751)
Q Consensus 61 ~~~l~i~~~~~g~~~~lt~~~~~~~~~~~~~~~wspDg~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (751)
.++|+++|.++++.......... -.. ..||||+.|+.... -.+... +
T Consensus 26 ~~~v~ViD~~~~~v~g~i~~G~~-----P~~-~~spDg~~lyva~~~~~R~~~-----------------G--------- 73 (352)
T TIGR02658 26 TTQVYTIDGEAGRVLGMTDGGFL-----PNP-VVASDGSFFAHASTVYSRIAR-----------------G--------- 73 (352)
T ss_pred CceEEEEECCCCEEEEEEEccCC-----Cce-eECCCCCEEEEEecccccccc-----------------C---------
Confidence 38999999998874332222211 122 48999999987743 111110 0
Q ss_pred hccCCccchhhhhhheeeEEEEEcC-CCC-ceecCCC--------ceEEeeeeCCCCceEEEEEecCCcccccccCCCce
Q 004475 140 NLLKDEYDESLFDYYTTAQLVLGSL-DGT-AKDFGTP--------AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQ 209 (751)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~l~~~~~-~G~-~~~lt~~--------~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~ 209 (751)
.+...|-++|+ +++ ..+|.-+ .....+++|||||+|++..... ..
T Consensus 74 --------------~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~~~~~~~~ls~dgk~l~V~n~~p-----------~~ 128 (352)
T TIGR02658 74 --------------KRTDYVEVIDPQTHLPIADIELPEGPRFLVGTYPWMTSLTPDNKTLLFYQFSP-----------SP 128 (352)
T ss_pred --------------CCCCEEEEEECccCcEEeEEccCCCchhhccCccceEEECCCCCEEEEecCCC-----------CC
Confidence 01246777888 663 3334322 1223789999999999864331 34
Q ss_pred eEEEEeCCCceeeeeccCCCCCCCCCccCCccCCCceeeeecCCCceEEEEEeccCCCCccccCcccceeeccCCCCCCC
Q 004475 210 KVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGE 289 (751)
Q Consensus 210 ~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~spdG~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 289 (751)
.+-++|+.+++...-...+..... +.. .....+...+||+. +.+.... .+....
T Consensus 129 ~V~VvD~~~~kvv~ei~vp~~~~v---y~t--~e~~~~~~~~Dg~~-~~v~~d~-----------~g~~~~--------- 182 (352)
T TIGR02658 129 AVGVVDLEGKAFVRMMDVPDCYHI---FPT--ANDTFFMHCRDGSL-AKVGYGT-----------KGNPKI--------- 182 (352)
T ss_pred EEEEEECCCCcEEEEEeCCCCcEE---EEe--cCCccEEEeecCce-EEEEecC-----------CCceEE---------
Confidence 678899987765432122211000 000 00112233455544 2222111 011000
Q ss_pred CceEeEee--ceeEE-EEEec-CCceEEEeeeecccceeEEEecCCCCCCccee---e-eecccccccCCCCCCCeeeCC
Q 004475 290 KPEILHKL--DLRFS-VSWCD-DSLALVNETWYKTSQTRTWLVCPGSKDVAPRV---L-FDRVFENVYSDPGSPMMTRTS 361 (751)
Q Consensus 290 ~~~~l~~~--~~~~~-~~~sp-dg~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~---l-~~~~~~~~~~~~~~~~~~~sp 361 (751)
....+... ..... |.+++ ||++++.+.+ ..|+.+|+.+....... + +......-|.-.+...++++|
T Consensus 183 ~~~~vf~~~~~~v~~rP~~~~~dg~~~~vs~e-----G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~ 257 (352)
T TIGR02658 183 KPTEVFHPEDEYLINHPAYSNKSGRLVWPTYT-----GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHR 257 (352)
T ss_pred eeeeeecCCccccccCCceEcCCCcEEEEecC-----CeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcC
Confidence 00111111 11123 55677 7876655442 58999997663111111 1 111111111111111177899
Q ss_pred CCCEEEEeeeecCCcceEEEEccCCCCCCCCCceeEEEecCCCceeEEeeccchhhhhceeeeecCCcceeeccCCCEEE
Q 004475 362 TGTNVIAKIKKENDEQIYILLNGRGFTPEGNIPFLDLFDINTGSKERIWESNREKYFETAVALVFGQGEEDINLNQLKIL 441 (751)
Q Consensus 362 DG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~ 441 (751)
||+.|+...+. +...++...-.+|+++|+++++.......... ...+++||||+-++
T Consensus 258 dg~~lyV~~~~-----------~~~~thk~~~~~V~ViD~~t~kvi~~i~vG~~------------~~~iavS~Dgkp~l 314 (352)
T TIGR02658 258 ARDRIYLLADQ-----------RAKWTHKTASRFLFVVDAKTGKRLRKIELGHE------------IDSINVSQDAKPLL 314 (352)
T ss_pred CCCEEEEEecC-----------CccccccCCCCEEEEEECCCCeEEEEEeCCCc------------eeeEEECCCCCeEE
Confidence 99988875532 11122233345899999999877554443221 22358999999555
Q ss_pred EEEecCCCCCeEEEEEcCCCcee
Q 004475 442 TSKESKTEITQYHILSWPLKKSS 464 (751)
Q Consensus 442 ~~~~~~~~~~~l~~~~~~~g~~~ 464 (751)
|..... ...+.++|+.+++..
T Consensus 315 yvtn~~--s~~VsViD~~t~k~i 335 (352)
T TIGR02658 315 YALSTG--DKTLYIFDAETGKEL 335 (352)
T ss_pred EEeCCC--CCcEEEEECcCCeEE
Confidence 544322 345999999888644
No 169
>COG0627 Predicted esterase [General function prediction only]
Probab=99.11 E-value=1.2e-09 Score=108.41 Aligned_cols=147 Identities=20% Similarity=0.191 Sum_probs=103.3
Q ss_pred HHHcCCCCC--CcEEEEEeChHHHHHHHHHHhCCCceeEEEEccCCCCCC---------CCccCcccccccchh-h-HHH
Q 004475 592 VVRRGVADP--SRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGSYNKT---------LTPFGFQTEFRTLWE-A-TNV 658 (751)
Q Consensus 592 l~~~~~id~--~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~~d~~---------~~~~~~~~~~~~~~~-~-~~~ 658 (751)
+.+....+. ++.+|+||||||+-|+.+|+++|++|+.+.+++|+++.. ...++...... .|. . ...
T Consensus 141 ~~~~f~~~~~~~~~aI~G~SMGG~GAl~lA~~~pd~f~~~sS~Sg~~~~s~~~~~~~~~~~~~g~~~~~~-~~G~~~~~~ 219 (316)
T COG0627 141 WEAAFPADGTGDGRAIAGHSMGGYGALKLALKHPDRFKSASSFSGILSPSSPWGPTLAMGDPWGGKAFNA-MLGPDSDPA 219 (316)
T ss_pred HHHhcCcccccCCceeEEEeccchhhhhhhhhCcchhceeccccccccccccccccccccccccCccHHH-hcCCCcccc
Confidence 333333444 389999999999999999999999999999999998865 33222211111 111 1 113
Q ss_pred HHhcCcccccCC--------------CCCCEEEEEcCCCCCCCCChHHHHHHHHHHHhCCCcEEEEEeCCCCCcCCcccc
Q 004475 659 YIEMSPITHANK--------------IKKPILIIHGEVDDKVGLFPMQAERFFDALKGHGALSRLVLLPFEHHVYAAREN 724 (751)
Q Consensus 659 ~~~~~~~~~~~~--------------~~~P~li~~G~~D~~vp~~~~~~~~~~~~l~~~~~~~~~~~~~~~~H~~~~~~~ 724 (751)
+.++++...+++ ...++++-+|..|.+........+.+.+++.+.|.+..+...++..|.+..
T Consensus 220 w~~~D~~~~~~~l~~~~~~~~~~~~~~~~~~~~d~g~ad~~~~~~~~~~~~~~~a~~~~g~~~~~~~~~~G~Hsw~~--- 296 (316)
T COG0627 220 WQENDPLSLIEKLVANANTRIWVYGGSPPELLIDNGPADFFLAANNLSTRAFAEALRAAGIPNGVRDQPGGDHSWYF--- 296 (316)
T ss_pred ccccCchhHHHHhhhcccccceecccCCCccccccccchhhhhhcccCHHHHHHHHHhcCCCceeeeCCCCCcCHHH---
Confidence 344444444432 457788889999987520133478899999999999999999889998643
Q ss_pred HHHHHHHHHHHHHHHhcC
Q 004475 725 VMHVIWETDRWLQKYCLS 742 (751)
Q Consensus 725 ~~~~~~~~~~fl~~~l~~ 742 (751)
+...+..++.|+...+..
T Consensus 297 w~~~l~~~~~~~a~~l~~ 314 (316)
T COG0627 297 WASQLADHLPWLAGALGL 314 (316)
T ss_pred HHHHHHHHHHHHHHHhcc
Confidence 667888999999988763
No 170
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=99.10 E-value=2.4e-09 Score=104.24 Aligned_cols=248 Identities=8% Similarity=0.032 Sum_probs=142.9
Q ss_pred ceeEEeecCCCCCCCCcccccCCCCcccccceeecCC--CCeEEEEEeecccccccCCceeEEEEEcCCC-CeeeccCCC
Q 004475 5 TGIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPD--GKRIAFSVRVDEEDNVSSCKLRVWIADAETG-EAKPLFESP 81 (751)
Q Consensus 5 ~~~~~~~~~~~~~~g~~~~l~~~~~~~~~~~p~~SPD--G~~iaf~~~~~~~~~~~~~~~~l~i~~~~~g-~~~~lt~~~ 81 (751)
..+.+|+..+ .+..+.- ......+....|+|. +..||..+. ++...|| ++++. ....|+...
T Consensus 197 G~~kvW~~~~----~~~~~~l-~gH~~~v~~~~fhP~~~~~~lat~s~--------Dgtvklw--~~~~e~~l~~l~gH~ 261 (459)
T KOG0272|consen 197 GLVKVWSVPQ----CNLLQTL-RGHTSRVGAAVFHPVDSDLNLATASA--------DGTVKLW--KLSQETPLQDLEGHL 261 (459)
T ss_pred CceeEeecCC----cceeEEE-eccccceeeEEEccCCCccceeeecc--------CCceeee--ccCCCcchhhhhcch
Confidence 3467788877 6544322 122336889999998 567777643 4445555 44442 234444333
Q ss_pred CccccceeeeeEEecCCcEEEEeecCCCCCCCCCCCCCCCCceeeccccccccchhhhhccCCccchhhhhhheeeEEEE
Q 004475 82 DICLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVL 161 (751)
Q Consensus 82 ~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 161 (751)
. .+..++|.|+|++|...+.+ .+..|
T Consensus 262 ~-----RVs~VafHPsG~~L~TasfD-----------------------------------------------~tWRl-- 287 (459)
T KOG0272|consen 262 A-----RVSRVAFHPSGKFLGTASFD-----------------------------------------------STWRL-- 287 (459)
T ss_pred h-----hheeeeecCCCceeeecccc-----------------------------------------------cchhh--
Confidence 2 36789999999999987553 11333
Q ss_pred EcC-CCCceecCCC--ceEEeeeeCCCCceEEEEEecCCcccccccCCCceeEEEEeCCCceeeeeccCCCCCCCCCccC
Q 004475 162 GSL-DGTAKDFGTP--AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYN 238 (751)
Q Consensus 162 ~~~-~G~~~~lt~~--~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~ 238 (751)
+|+ +++.-.+..+ ..+.+++|.|||..++.-..+. --.+||+.++...-+ +.
T Consensus 288 WD~~tk~ElL~QEGHs~~v~~iaf~~DGSL~~tGGlD~-------------~~RvWDlRtgr~im~------------L~ 342 (459)
T KOG0272|consen 288 WDLETKSELLLQEGHSKGVFSIAFQPDGSLAATGGLDS-------------LGRVWDLRTGRCIMF------------LA 342 (459)
T ss_pred cccccchhhHhhcccccccceeEecCCCceeeccCccc-------------hhheeecccCcEEEE------------ec
Confidence 466 4433223333 7788999999998766543332 234899987754322 22
Q ss_pred CccCCCceeeeecCCCceEEEEEeccCCCCccccCcccceeeccCCCCCCCCceEeEeeceeEE-EEEecCCceEEEeee
Q 004475 239 SVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFS-VSWCDDSLALVNETW 317 (751)
Q Consensus 239 ~~~~~~~~~~~spdG~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~-~~~spdg~~l~~~~~ 317 (751)
..-..+..++|||+|-. |+-.+ ..+...++|+.. -.....+......++ +.|+|++.+++.++.
T Consensus 343 gH~k~I~~V~fsPNGy~-lATgs------------~Dnt~kVWDLR~--r~~ly~ipAH~nlVS~Vk~~p~~g~fL~Tas 407 (459)
T KOG0272|consen 343 GHIKEILSVAFSPNGYH-LATGS------------SDNTCKVWDLRM--RSELYTIPAHSNLVSQVKYSPQEGYFLVTAS 407 (459)
T ss_pred ccccceeeEeECCCceE-EeecC------------CCCcEEEeeecc--cccceecccccchhhheEecccCCeEEEEcc
Confidence 22334668999999977 54433 224566666631 112344445555566 899996544444442
Q ss_pred ecccceeEEEecCCCCCCcceeeeecccccccCCCCCCCeeeCCCCCEEEEeeee
Q 004475 318 YKTSQTRTWLVCPGSKDVAPRVLFDRVFENVYSDPGSPMMTRTSTGTNVIAKIKK 372 (751)
Q Consensus 318 ~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~spDG~~l~~~~~~ 372 (751)
.+ ..-.||. ..+. ...+.|. +....+.+ +..|+||.+++..+.+
T Consensus 408 yD-~t~kiWs--~~~~-~~~ksLa-GHe~kV~s------~Dis~d~~~i~t~s~D 451 (459)
T KOG0272|consen 408 YD-NTVKIWS--TRTW-SPLKSLA-GHEGKVIS------LDISPDSQAIATSSFD 451 (459)
T ss_pred cC-cceeeec--CCCc-ccchhhc-CCccceEE------EEeccCCceEEEeccC
Confidence 22 2234553 3342 2223333 33333333 6689999999888744
No 171
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=99.09 E-value=9.8e-08 Score=88.85 Aligned_cols=266 Identities=11% Similarity=0.114 Sum_probs=160.3
Q ss_pred ccccceeecCCCCeEEEEEeecccccccCCceeEEEEEcCCCCeeeccCCCCccccceeeeeEEecCCcEEEEeecCCCC
Q 004475 31 AKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRR 110 (751)
Q Consensus 31 ~~~~~p~~SPDG~~iaf~~~~~~~~~~~~~~~~l~i~~~~~g~~~~lt~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~ 110 (751)
.++....||+|+++|+-.+ ..+.|.|+|.-+.........+.. .+..+++||.|+.||....+.
T Consensus 56 ~Ki~~~~ws~Dsr~ivSaS----------qDGklIvWDs~TtnK~haipl~s~----WVMtCA~sPSg~~VAcGGLdN-- 119 (343)
T KOG0286|consen 56 NKIYAMDWSTDSRRIVSAS----------QDGKLIVWDSFTTNKVHAIPLPSS----WVMTCAYSPSGNFVACGGLDN-- 119 (343)
T ss_pred cceeeeEecCCcCeEEeec----------cCCeEEEEEcccccceeEEecCce----eEEEEEECCCCCeEEecCcCc--
Confidence 3688999999999998864 346788889877654444333332 467889999999999873321
Q ss_pred CCCCCCCCCCCCceeeccccccccchhhhhccCCccchhhhhhheeeEEEEEcC---CC---CceecCCC-ceEEeeeeC
Q 004475 111 DPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL---DG---TAKDFGTP-AVYTAVEPS 183 (751)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~---~G---~~~~lt~~-~~~~~~~~S 183 (751)
.-.||-+.. +| ..+.|..+ +.+....|-
T Consensus 120 ---------------------------------------------~Csiy~ls~~d~~g~~~v~r~l~gHtgylScC~f~ 154 (343)
T KOG0286|consen 120 ---------------------------------------------KCSIYPLSTRDAEGNVRVSRELAGHTGYLSCCRFL 154 (343)
T ss_pred ---------------------------------------------eeEEEecccccccccceeeeeecCccceeEEEEEc
Confidence 134554443 33 22345555 666788888
Q ss_pred CCCceEEEEEecCCcccccccCCCceeEEEEeCCCceeeeecc-CCCCCCCCCccCCccCCCceeeeec-CCCceEEEEE
Q 004475 184 PDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCD-LPPAEDIPVCYNSVREGMRSISWRA-DKPSTLYWVE 261 (751)
Q Consensus 184 pDG~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~sp-dG~~~i~~~~ 261 (751)
+|+. |+..+.+ ...-+||+++++..+... +.+. +-.++++| |++. .+-..
T Consensus 155 dD~~-ilT~SGD-------------~TCalWDie~g~~~~~f~GH~gD-------------V~slsl~p~~~nt-FvSg~ 206 (343)
T KOG0286|consen 155 DDNH-ILTGSGD-------------MTCALWDIETGQQTQVFHGHTGD-------------VMSLSLSPSDGNT-FVSGG 206 (343)
T ss_pred CCCc-eEecCCC-------------ceEEEEEcccceEEEEecCCccc-------------EEEEecCCCCCCe-EEecc
Confidence 7775 4444322 346689999876554332 2222 44778999 8886 22211
Q ss_pred eccCCCCccccCcccceeeccCCCCCCCCceEeEeeceeEE-EEEecCCceEEEeeeecccceeEEEecCCCCCCcceee
Q 004475 262 AQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFS-VSWCDDSLALVNETWYKTSQTRTWLVCPGSKDVAPRVL 340 (751)
Q Consensus 262 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~-~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~l 340 (751)
-....+++|+- .+...+.....+..+. +.|-|+|..++..+. ...-++|-+..+-. ..+
T Consensus 207 ------------cD~~aklWD~R--~~~c~qtF~ghesDINsv~ffP~G~afatGSD--D~tcRlyDlRaD~~----~a~ 266 (343)
T KOG0286|consen 207 ------------CDKSAKLWDVR--SGQCVQTFEGHESDINSVRFFPSGDAFATGSD--DATCRLYDLRADQE----LAV 266 (343)
T ss_pred ------------cccceeeeecc--CcceeEeecccccccceEEEccCCCeeeecCC--CceeEEEeecCCcE----Eee
Confidence 12356667763 1445566666777888 999999998887663 33346665555442 223
Q ss_pred eecccccccCCCCCCCeeeCCCCCEEEEeeeecCCcceEEEEccCCCCCCCCCceeEEEecCCCceeEEeeccchhhhhc
Q 004475 341 FDRVFENVYSDPGSPMMTRTSTGTNVIAKIKKENDEQIYILLNGRGFTPEGNIPFLDLFDINTGSKERIWESNREKYFET 420 (751)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~spDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~ 420 (751)
+...... .+...++||..|+.|+....+ ....+||.-.++..-+....++ +
T Consensus 267 ys~~~~~----~gitSv~FS~SGRlLfagy~d---------------------~~c~vWDtlk~e~vg~L~GHeN----R 317 (343)
T KOG0286|consen 267 YSHDSII----CGITSVAFSKSGRLLFAGYDD---------------------FTCNVWDTLKGERVGVLAGHEN----R 317 (343)
T ss_pred eccCccc----CCceeEEEcccccEEEeeecC---------------------CceeEeeccccceEEEeeccCC----e
Confidence 3221111 122227899999877665522 2677889766665444333221 2
Q ss_pred eeeeecCCcceeeccCCCEEE
Q 004475 421 AVALVFGQGEEDINLNQLKIL 441 (751)
Q Consensus 421 ~~~~~~~~~~~~~s~dg~~l~ 441 (751)
+.- ...+|||--+.
T Consensus 318 vSc-------l~~s~DG~av~ 331 (343)
T KOG0286|consen 318 VSC-------LGVSPDGMAVA 331 (343)
T ss_pred eEE-------EEECCCCcEEE
Confidence 333 36788885443
No 172
>PF08538 DUF1749: Protein of unknown function (DUF1749); InterPro: IPR013744 This is a plant and fungal family of unknown function. This family contains many hypothetical proteins. ; PDB: 2Q0X_B.
Probab=99.09 E-value=1.2e-09 Score=105.63 Aligned_cols=208 Identities=14% Similarity=0.072 Sum_probs=83.1
Q ss_pred ccEEEEEcCCCCcCcccCCcccCCCCccCCCCchHHHHHHhCCeEEEEcCCC-CCCCCCCCCCCchhHHHHHHHHHHHHH
Q 004475 512 LPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGPSI-PIIGEGDKLPNDRFVEQLVSSAEAAVE 590 (751)
Q Consensus 512 ~P~vv~~HGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~v~~~~~~-~~~g~g~~~~~~~~~~~~~~d~~~~v~ 590 (751)
.-+|||+-|-+ +++. ...+...++..+...||.|+.+.-. .+.|+|- ...++.++|+.++|+
T Consensus 33 ~~~llfIGGLt-----------DGl~-tvpY~~~La~aL~~~~wsl~q~~LsSSy~G~G~-----~SL~~D~~eI~~~v~ 95 (303)
T PF08538_consen 33 PNALLFIGGLT-----------DGLL-TVPYLPDLAEALEETGWSLFQVQLSSSYSGWGT-----SSLDRDVEEIAQLVE 95 (303)
T ss_dssp SSEEEEE--TT-------------TT--STCHHHHHHHHT-TT-EEEEE--GGGBTTS-S-------HHHHHHHHHHHHH
T ss_pred CcEEEEECCCC-----------CCCC-CCchHHHHHHHhccCCeEEEEEEecCccCCcCc-----chhhhHHHHHHHHHH
Confidence 34799997743 2211 1223345566666689999873332 2455554 356777999999999
Q ss_pred HHHHcC--CCCCCcEEEEEeChHHHHHHHHHHhCC-----CceeEEEEccCCCCCCCCccCccc-cc-------------
Q 004475 591 EVVRRG--VADPSRIAVGGHSYGAFMTAHLLAHAP-----HLFCCGIARSGSYNKTLTPFGFQT-EF------------- 649 (751)
Q Consensus 591 ~l~~~~--~id~~~i~l~G~S~GG~~a~~~a~~~p-----~~~~~~v~~~~~~d~~~~~~~~~~-~~------------- 649 (751)
||+... .-..++|+|+|||-|..-++.++.+.. ..+.++|+.+|+.|+......... +.
T Consensus 96 ylr~~~~g~~~~~kIVLmGHSTGcQdvl~Yl~~~~~~~~~~~VdG~ILQApVSDREa~~~~~~~~~~~~~~v~~A~~~i~ 175 (303)
T PF08538_consen 96 YLRSEKGGHFGREKIVLMGHSTGCQDVLHYLSSPNPSPSRPPVDGAILQAPVSDREAILNFLGEREAYEELVALAKELIA 175 (303)
T ss_dssp HHHHHS------S-EEEEEECCHHHHHHHHHHH-TT---CCCEEEEEEEEE---TTSTTTSHHH---HHHHHHHHHHHHH
T ss_pred HHHHhhccccCCccEEEEecCCCcHHHHHHHhccCccccccceEEEEEeCCCCChhHhhhcccchHHHHHHHHHHHHHHH
Confidence 999873 124689999999999999999997652 569999999999986654432211 00
Q ss_pred ------------------ccchhhHHHHHhcC----------------cccccCCCCCCEEEEEcCCCCCCCCChHHHHH
Q 004475 650 ------------------RTLWEATNVYIEMS----------------PITHANKIKKPILIIHGEVDDKVGLFPMQAER 695 (751)
Q Consensus 650 ------------------~~~~~~~~~~~~~~----------------~~~~~~~~~~P~li~~G~~D~~vp~~~~~~~~ 695 (751)
..+....+++...+ ......++..|+|++.+++|..|| +....++
T Consensus 176 ~g~~~~~lp~~~~~~~~~~~PiTA~Rf~SL~s~~gdDD~FSSDL~de~l~~tfG~v~~plLvl~Sg~DEyvP-~~vdk~~ 254 (303)
T PF08538_consen 176 EGKGDEILPREFTPLVFYDTPITAYRFLSLASPGGDDDYFSSDLSDERLKKTFGKVSKPLLVLYSGKDEYVP-PWVDKEA 254 (303)
T ss_dssp CT-TT-GG----GGTTT-SS---HHHHHT-S-SSHHHHTHHHHHTT-HHHHTGGG--S-EEEEEE--TT-----------
T ss_pred cCCCCceeeccccccccCCCcccHHHHHhccCCCCcccccCCCCCHHHHHHHhccCCCceEEEecCCCceec-ccccccc
Confidence 00000000100000 112345678899999999999998 2233455
Q ss_pred HHHHHHhCCCc----EEEEEeCCCCCcCCcccc---HHHHHHHHHHHHH
Q 004475 696 FFDALKGHGAL----SRLVLLPFEHHVYAAREN---VMHVIWETDRWLQ 737 (751)
Q Consensus 696 ~~~~l~~~~~~----~~~~~~~~~~H~~~~~~~---~~~~~~~~~~fl~ 737 (751)
+.++++.+-.+ -...++||++|.+..... .+...+++..||+
T Consensus 255 Ll~rw~~a~~~~~~s~~S~iI~GA~H~~~~~~~~~~~~~l~~rV~~fl~ 303 (303)
T PF08538_consen 255 LLERWKAATNPKIWSPLSGIIPGASHNVSGPSQAEAREWLVERVVKFLK 303 (303)
T ss_dssp -------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccCC
Confidence 66666543222 234689999999865433 2356677777763
No 173
>PRK07868 acyl-CoA synthetase; Validated
Probab=99.09 E-value=7.9e-09 Score=122.33 Aligned_cols=234 Identities=14% Similarity=0.102 Sum_probs=135.7
Q ss_pred eEEEEEEcCCCCCCCCCCCccEEEEEcCCCCcCcccCCcccCCCCccCCCC-chHHHHHHhCCeEEEEcCCCCCCCCCCC
Q 004475 493 PLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMT-PTSSLIFLARRFAVLAGPSIPIIGEGDK 571 (751)
Q Consensus 493 ~i~~~~~~P~~~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~G~~v~~~~~~~~~g~g~~ 571 (751)
.+.-+-|.|......++...|.||++||.+. ....|.... ..+...|+++||.|+++|. +..+....
T Consensus 48 ~~~l~~y~~~~~~~~~~~~~~plllvhg~~~-----------~~~~~d~~~~~s~v~~L~~~g~~v~~~d~-G~~~~~~~ 115 (994)
T PRK07868 48 MYRLRRYFPPDNRPGQPPVGPPVLMVHPMMM-----------SADMWDVTRDDGAVGILHRAGLDPWVIDF-GSPDKVEG 115 (994)
T ss_pred cEEEEEeCCCCccccccCCCCcEEEECCCCC-----------CccceecCCcccHHHHHHHCCCEEEEEcC-CCCChhHc
Confidence 4566667665421111112478999999531 112222110 1135678899999999663 22111000
Q ss_pred CCCchhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhC-CCceeEEEEccCCCCCCCC-ccC-----
Q 004475 572 LPNDRFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHA-PHLFCCGIARSGSYNKTLT-PFG----- 644 (751)
Q Consensus 572 ~~~~~~~~~~~~d~~~~v~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~-p~~~~~~v~~~~~~d~~~~-~~~----- 644 (751)
.......+.+..+.++++.+++.. .+++.++||||||.+++.+++.+ +++++.+|++++..|.... +..
T Consensus 116 -~~~~~l~~~i~~l~~~l~~v~~~~---~~~v~lvG~s~GG~~a~~~aa~~~~~~v~~lvl~~~~~d~~~~~~~~~~~~~ 191 (994)
T PRK07868 116 -GMERNLADHVVALSEAIDTVKDVT---GRDVHLVGYSQGGMFCYQAAAYRRSKDIASIVTFGSPVDTLAALPMGIPAGL 191 (994)
T ss_pred -CccCCHHHHHHHHHHHHHHHHHhh---CCceEEEEEChhHHHHHHHHHhcCCCccceEEEEecccccCCCCcccchhhh
Confidence 001122333455666666665543 24799999999999999888754 5589999887766542110 000
Q ss_pred -----------------cccc-----------------c----------c--------------cch-hh-----H---H
Q 004475 645 -----------------FQTE-----------------F----------R--------------TLW-EA-----T---N 657 (751)
Q Consensus 645 -----------------~~~~-----------------~----------~--------------~~~-~~-----~---~ 657 (751)
.+.. . . ..| .. . .
T Consensus 192 ~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~p~~~~~~~~~~~~~l~~~~~~~~~e~~~~~~~~~~w~~~~g~~~~~~~~ 271 (994)
T PRK07868 192 AAAAADFMADHVFNRLDIPGWMARTGFQMLDPVKTAKARVDFLRQLHDREALLPREQQRRFLESEGWIAWSGPAISELLK 271 (994)
T ss_pred hhcccccchhhhhhcCCCCHHHHHHHHHhcChhHHHHHHHHHHHhcCchhhhccchhhHhHHHHhhccccchHHHHHHHH
Confidence 0000 0 0 001 00 0 0
Q ss_pred HHHh-cCcc----------cccCCCCCCEEEEEcCCCCCCCCChHHHHHHHHHHHhCCCcEEE-EEeCCCCCcCCc--cc
Q 004475 658 VYIE-MSPI----------THANKIKKPILIIHGEVDDKVGLFPMQAERFFDALKGHGALSRL-VLLPFEHHVYAA--RE 723 (751)
Q Consensus 658 ~~~~-~~~~----------~~~~~~~~P~li~~G~~D~~vp~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~H~~~~--~~ 723 (751)
.+.. .... ..+.++++|+|+++|++|.++| +..++.+.+.+.. .++ .+++++||.... ..
T Consensus 272 ~~~~~n~~~~g~~~~~~~~~~L~~i~~P~L~i~G~~D~ivp--~~~~~~l~~~i~~----a~~~~~~~~~GH~g~~~g~~ 345 (994)
T PRK07868 272 QFIAHNRMMTGGFAINGQMVTLADITCPVLAFVGEVDDIGQ--PASVRGIRRAAPN----AEVYESLIRAGHFGLVVGSR 345 (994)
T ss_pred HHHHhCcccCceEEECCEEcchhhCCCCEEEEEeCCCCCCC--HHHHHHHHHhCCC----CeEEEEeCCCCCEeeeechh
Confidence 0110 0011 1357889999999999999999 8888888776543 345 577899998533 34
Q ss_pred cHHHHHHHHHHHHHHHhcCCCCCCC
Q 004475 724 NVMHVIWETDRWLQKYCLSNTSDGK 748 (751)
Q Consensus 724 ~~~~~~~~~~~fl~~~l~~~~~~~~ 748 (751)
...+.+..+.+||.++-.....+.+
T Consensus 346 a~~~~wp~i~~wl~~~~~~~~~~~~ 370 (994)
T PRK07868 346 AAQQTWPTVADWVKWLEGDGDKPEN 370 (994)
T ss_pred hhhhhChHHHHHHHHhccCCCCCcc
Confidence 4667899999999998766555544
No 174
>KOG2112 consensus Lysophospholipase [Lipid transport and metabolism]
Probab=99.09 E-value=5.1e-09 Score=94.09 Aligned_cols=116 Identities=22% Similarity=0.275 Sum_probs=91.8
Q ss_pred CCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEccCCCCCCCCccCcccccccchhhHHHHHhcCcccccCCCCCCE
Q 004475 596 GVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGSYNKTLTPFGFQTEFRTLWEATNVYIEMSPITHANKIKKPI 675 (751)
Q Consensus 596 ~~id~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~ 675 (751)
..++.+||++-|+||||.+|+.++..+|..+.+++..+++......... . | -+ ..+ .+|+
T Consensus 88 ~Gi~~~rI~igGfs~G~a~aL~~~~~~~~~l~G~~~~s~~~p~~~~~~~--~-----~---------~~---~~~-~~~i 147 (206)
T KOG2112|consen 88 NGIPSNRIGIGGFSQGGALALYSALTYPKALGGIFALSGFLPRASIGLP--G-----W---------LP---GVN-YTPI 147 (206)
T ss_pred cCCCccceeEcccCchHHHHHHHHhccccccceeeccccccccchhhcc--C-----C---------cc---ccC-cchh
Confidence 3478899999999999999999999998888888888886542221110 0 0 00 001 6899
Q ss_pred EEEEcCCCCCCCCChHHHHHHHHHHHhCCCcEEEEEeCCCCCcCCccccHHHHHHHHHHHHHH
Q 004475 676 LIIHGEVDDKVGLFPMQAERFFDALKGHGALSRLVLLPFEHHVYAARENVMHVIWETDRWLQK 738 (751)
Q Consensus 676 li~~G~~D~~vp~~~~~~~~~~~~l~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~fl~~ 738 (751)
++.||+.|++|| ..-..+..+.|+..+.+++++.|++.+|.... +-+.++..|+.+
T Consensus 148 ~~~Hg~~d~~vp--~~~g~~s~~~l~~~~~~~~f~~y~g~~h~~~~-----~e~~~~~~~~~~ 203 (206)
T KOG2112|consen 148 LLCHGTADPLVP--FRFGEKSAQFLKSLGVRVTFKPYPGLGHSTSP-----QELDDLKSWIKT 203 (206)
T ss_pred heecccCCceee--hHHHHHHHHHHHHcCCceeeeecCCccccccH-----HHHHHHHHHHHH
Confidence 999999999999 89999999999999999999999999998753 556778888876
No 175
>TIGR01838 PHA_synth_I poly(R)-hydroxyalkanoic acid synthase, class I. This model represents the class I subfamily of poly(R)-hydroxyalkanoate synthases, which polymerizes hydroxyacyl-CoAs with three to five carbons in the hydroxyacyl backbone into aliphatic esters termed poly(R)-hydroxyalkanoic acids. These polymers accumulate as carbon and energy storage inclusions in many species and can amount to 90 percent of the dry weight of cell.
Probab=99.08 E-value=5.3e-09 Score=111.85 Aligned_cols=125 Identities=11% Similarity=0.004 Sum_probs=77.8
Q ss_pred eEEEEEEcCCCCCCCCCCCccEEEEEcCCCCcCcccCCcccCCCCccCC-CCchHHHHHHhCCeEEEEcCCCCCCCCCCC
Q 004475 493 PLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSG-MTPTSSLIFLARRFAVLAGPSIPIIGEGDK 571 (751)
Q Consensus 493 ~i~~~~~~P~~~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~G~~v~~~~~~~~~g~g~~ 571 (751)
.++-+-|.|.... ...+.||++||.. ....-+.- -...+..+|+++||.|++++ .+|.|.+
T Consensus 173 ~~eLi~Y~P~t~~----~~~~PlLiVp~~i-----------~k~yilDL~p~~Slv~~L~~qGf~V~~iD---wrgpg~s 234 (532)
T TIGR01838 173 LFQLIQYEPTTET----VHKTPLLIVPPWI-----------NKYYILDLRPQNSLVRWLVEQGHTVFVIS---WRNPDAS 234 (532)
T ss_pred cEEEEEeCCCCCc----CCCCcEEEECccc-----------ccceeeecccchHHHHHHHHCCcEEEEEE---CCCCCcc
Confidence 4677777775421 1245688888841 11111110 01246778899999999944 4455544
Q ss_pred CCCchhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHH----HHHhC-CCceeEEEEccCCCC
Q 004475 572 LPNDRFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAH----LLAHA-PHLFCCGIARSGSYN 637 (751)
Q Consensus 572 ~~~~~~~~~~~~d~~~~v~~l~~~~~id~~~i~l~G~S~GG~~a~~----~a~~~-p~~~~~~v~~~~~~d 637 (751)
.......+-..+++.++++.+++.. +..++.++||||||.+++. +++.. +++++++++++...|
T Consensus 235 ~~~~~~ddY~~~~i~~al~~v~~~~--g~~kv~lvG~cmGGtl~a~ala~~aa~~~~~rv~slvll~t~~D 303 (532)
T TIGR01838 235 QADKTFDDYIRDGVIAALEVVEAIT--GEKQVNCVGYCIGGTLLSTALAYLAARGDDKRIKSATFFTTLLD 303 (532)
T ss_pred cccCChhhhHHHHHHHHHHHHHHhc--CCCCeEEEEECcCcHHHHHHHHHHHHhCCCCccceEEEEecCcC
Confidence 3322222233355778888887653 4578999999999998632 34444 678999998888766
No 176
>COG3571 Predicted hydrolase of the alpha/beta-hydrolase fold [General function prediction only]
Probab=99.08 E-value=8.1e-09 Score=87.13 Aligned_cols=166 Identities=14% Similarity=0.127 Sum_probs=102.2
Q ss_pred cEEEEEcCCCCcCcccCCcccCCCCccCC-CCchHHHHHHhCCeEEEE--cCCCCCCCCCCCCCCchhHHHHHHHHHHHH
Q 004475 513 PCLFWAYPEDYKSKDAAGQVRGSPNEFSG-MTPTSSLIFLARRFAVLA--GPSIPIIGEGDKLPNDRFVEQLVSSAEAAV 589 (751)
Q Consensus 513 P~vv~~HGg~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~G~~v~~--~~~~~~~g~g~~~~~~~~~~~~~~d~~~~v 589 (751)
-+||+.||.|-. +.. .....+..|+.+|+.|+. .+|+..+-.|...++... ...-...+.++
T Consensus 15 ~tilLaHGAGas--------------mdSt~m~~~a~~la~~G~~vaRfefpYma~Rrtg~rkPp~~~-~t~~~~~~~~~ 79 (213)
T COG3571 15 VTILLAHGAGAS--------------MDSTSMTAVAAALARRGWLVARFEFPYMAARRTGRRKPPPGS-GTLNPEYIVAI 79 (213)
T ss_pred EEEEEecCCCCC--------------CCCHHHHHHHHHHHhCceeEEEeecchhhhccccCCCCcCcc-ccCCHHHHHHH
Confidence 468889997521 111 122456688899999987 444333334432222111 11122233455
Q ss_pred HHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEccCCCCCCCCccCcccccccchhhHHHHHhcCcccccC
Q 004475 590 EEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGSYNKTLTPFGFQTEFRTLWEATNVYIEMSPITHAN 669 (751)
Q Consensus 590 ~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 669 (751)
..|++. .+..++++-|+||||.++.+++..--..+.++++++=.+. +.+.+.. -...++.
T Consensus 80 aql~~~--l~~gpLi~GGkSmGGR~aSmvade~~A~i~~L~clgYPfh----ppGKPe~--------------~Rt~HL~ 139 (213)
T COG3571 80 AQLRAG--LAEGPLIIGGKSMGGRVASMVADELQAPIDGLVCLGYPFH----PPGKPEQ--------------LRTEHLT 139 (213)
T ss_pred HHHHhc--ccCCceeeccccccchHHHHHHHhhcCCcceEEEecCccC----CCCCccc--------------chhhhcc
Confidence 555554 3456899999999999999998654344777777653322 2222211 1235678
Q ss_pred CCCCCEEEEEcCCCCCCCCChHHHHHHHHHHHhCCCcEEEEEeCCCCCcCC
Q 004475 670 KIKKPILIIHGEVDDKVGLFPMQAERFFDALKGHGALSRLVLLPFEHHVYA 720 (751)
Q Consensus 670 ~~~~P~li~~G~~D~~vp~~~~~~~~~~~~l~~~~~~~~~~~~~~~~H~~~ 720 (751)
.+++|+||.||+.|.+-. .+++ ... ....+++++++.++.|..-
T Consensus 140 gl~tPtli~qGtrD~fGt--r~~V---a~y--~ls~~iev~wl~~adHDLk 183 (213)
T COG3571 140 GLKTPTLITQGTRDEFGT--RDEV---AGY--ALSDPIEVVWLEDADHDLK 183 (213)
T ss_pred CCCCCeEEeecccccccC--HHHH---Hhh--hcCCceEEEEeccCccccc
Confidence 899999999999999865 4443 211 2235789999999999864
No 177
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.07 E-value=3.2e-07 Score=86.68 Aligned_cols=251 Identities=15% Similarity=0.156 Sum_probs=152.5
Q ss_pred cccceeecCCCCeEEEEEeecccccccCCceeEEEEEcCCCCeeeccCCCCccccceeeeeEEecCCcEEEEeecCCCCC
Q 004475 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRD 111 (751)
Q Consensus 32 ~~~~p~~SPDG~~iaf~~~~~~~~~~~~~~~~l~i~~~~~g~~~~lt~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~ 111 (751)
.+....||+||..++..+ ....|.+++...|..........+ ++..+.|.-....+.+.+...+
T Consensus 16 ~i~sl~fs~~G~~litss----------~dDsl~LYd~~~g~~~~ti~skky----G~~~~~Fth~~~~~i~sStk~d-- 79 (311)
T KOG1446|consen 16 KINSLDFSDDGLLLITSS----------EDDSLRLYDSLSGKQVKTINSKKY----GVDLACFTHHSNTVIHSSTKED-- 79 (311)
T ss_pred ceeEEEecCCCCEEEEec----------CCCeEEEEEcCCCceeeEeecccc----cccEEEEecCCceEEEccCCCC--
Confidence 578899999999998843 234677778878775555444433 4667788877777776643111
Q ss_pred CCCCCCCCCCCceeeccccccccchhhhhccCCccchhhhhhheeeEEEEEcC-CCC-ceecCCC-ceEEeeeeCCCCce
Q 004475 112 PPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DGT-AKDFGTP-AVYTAVEPSPDQKY 188 (751)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~G~-~~~lt~~-~~~~~~~~SpDG~~ 188 (751)
..|..+++ +-+ ++....+ ..+..+..||-+..
T Consensus 80 ---------------------------------------------~tIryLsl~dNkylRYF~GH~~~V~sL~~sP~~d~ 114 (311)
T KOG1446|consen 80 ---------------------------------------------DTIRYLSLHDNKYLRYFPGHKKRVNSLSVSPKDDT 114 (311)
T ss_pred ---------------------------------------------CceEEEEeecCceEEEcCCCCceEEEEEecCCCCe
Confidence 25666666 443 3344444 67789999998877
Q ss_pred EEEEEecCCcccccccCCCceeEEEEeCCCceeeeeccCCCCCCCCCccCCccCCCceeeeecCCCceEEEEEeccCCCC
Q 004475 189 VLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDA 268 (751)
Q Consensus 189 i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~spdG~~~i~~~~~~~~~~~ 268 (751)
++-.+.+ ..+.+||+...+.+-+-.... ....+++|+|- +|+.+.
T Consensus 115 FlS~S~D-------------~tvrLWDlR~~~cqg~l~~~~--------------~pi~AfDp~GL---ifA~~~----- 159 (311)
T KOG1446|consen 115 FLSSSLD-------------KTVRLWDLRVKKCQGLLNLSG--------------RPIAAFDPEGL---IFALAN----- 159 (311)
T ss_pred EEecccC-------------CeEEeeEecCCCCceEEecCC--------------CcceeECCCCc---EEEEec-----
Confidence 6655444 368899998654432222111 11459999994 443321
Q ss_pred ccccCcccceeeccCCCCCCCCceEeE---eeceeEE-EEEecCCceEEEeeeecccceeEEEecCCCCCCcceeeeecc
Q 004475 269 NVEVSPRDIIYTQPAEPAEGEKPEILH---KLDLRFS-VSWCDDSLALVNETWYKTSQTRTWLVCPGSKDVAPRVLFDRV 344 (751)
Q Consensus 269 ~~~~~~~~~l~~~~~~~~~~~~~~~l~---~~~~~~~-~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~ 344 (751)
....|.++|+...+++.-.... ....... +.||||||.|+.+++ .+.++++|+=.| ....-....
T Consensus 160 -----~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~----~s~~~~lDAf~G--~~~~tfs~~ 228 (311)
T KOG1446|consen 160 -----GSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTN----ASFIYLLDAFDG--TVKSTFSGY 228 (311)
T ss_pred -----CCCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeC----CCcEEEEEccCC--cEeeeEeec
Confidence 1235666666433222222221 1133445 899999999998773 346888888665 222222221
Q ss_pred cccccCCCCCCCeeeCCCCCEEEEeeeecCCcceEEEEccCCCCCCCCCceeEEEecCCCceeEEeecc
Q 004475 345 FENVYSDPGSPMMTRTSTGTNVIAKIKKENDEQIYILLNGRGFTPEGNIPFLDLFDINTGSKERIWESN 413 (751)
Q Consensus 345 ~~~~~~~~~~~~~~~spDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~ 413 (751)
.+... ....-.|+|||+.|+..+.+ .+|..|++++|.....+...
T Consensus 229 ~~~~~---~~~~a~ftPds~Fvl~gs~d---------------------g~i~vw~~~tg~~v~~~~~~ 273 (311)
T KOG1446|consen 229 PNAGN---LPLSATFTPDSKFVLSGSDD---------------------GTIHVWNLETGKKVAVLRGP 273 (311)
T ss_pred cCCCC---cceeEEECCCCcEEEEecCC---------------------CcEEEEEcCCCcEeeEecCC
Confidence 11100 01125699999988877732 37999999999887776653
No 178
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.07 E-value=4.3e-08 Score=89.71 Aligned_cols=251 Identities=8% Similarity=0.056 Sum_probs=147.2
Q ss_pred CCcceeEEeecCCCCCCCCcc-cccCCCCcccccceeecCCCCeEEEEEeecccccccCCceeEEEEEcCCCCeeeccCC
Q 004475 2 PFFTGIGIHRLLPDDSLGPEK-EVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFES 80 (751)
Q Consensus 2 ~~~~~~~~~~~~~~~~~g~~~-~l~~~~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~~~~~l~i~~~~~g~~~~lt~~ 80 (751)
|+-..+.++++.. ++.+ .+.....+..+-+..|+|--.-+.++. .+...+.+++...++...-+..
T Consensus 39 s~dktv~v~n~e~----~r~~~~~~~~gh~~svdql~w~~~~~d~~ata---------s~dk~ir~wd~r~~k~~~~i~~ 105 (313)
T KOG1407|consen 39 SFDKTVSVWNLER----DRFRKELVYRGHTDSVDQLCWDPKHPDLFATA---------SGDKTIRIWDIRSGKCTARIET 105 (313)
T ss_pred ccCCceEEEEecc----hhhhhhhcccCCCcchhhheeCCCCCcceEEe---------cCCceEEEEEeccCcEEEEeec
Confidence 3445677888877 4222 222222232567888998887776665 4557888888888887666544
Q ss_pred CCccccceeeeeEEecCCcEEEEeecCCCCCCCCCCCCCCCCceeeccccccccchhhhhccCCccchhhhhhheeeEEE
Q 004475 81 PDICLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLV 160 (751)
Q Consensus 81 ~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 160 (751)
.... ....|||||+++++...+ ..|-
T Consensus 106 ~~en-----i~i~wsp~g~~~~~~~kd-------------------------------------------------D~it 131 (313)
T KOG1407|consen 106 KGEN-----INITWSPDGEYIAVGNKD-------------------------------------------------DRIT 131 (313)
T ss_pred cCcc-----eEEEEcCCCCEEEEecCc-------------------------------------------------ccEE
Confidence 4322 356999999999998432 2344
Q ss_pred EEcC-CCCceec-CCCceEEeeeeCCCCceEEEEEecCCcccccccCCCceeEEEEeCCCceeeeeccCCCCCCCCCccC
Q 004475 161 LGSL-DGTAKDF-GTPAVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYN 238 (751)
Q Consensus 161 ~~~~-~G~~~~l-t~~~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~ 238 (751)
.+|. +-++..- .......++.|+-++..++.+ .... .+.+..-. .++.+ ..+.
T Consensus 132 ~id~r~~~~~~~~~~~~e~ne~~w~~~nd~Fflt-~GlG------------~v~ILsyp--sLkpv----------~si~ 186 (313)
T KOG1407|consen 132 FIDARTYKIVNEEQFKFEVNEISWNNSNDLFFLT-NGLG------------CVEILSYP--SLKPV----------QSIK 186 (313)
T ss_pred EEEecccceeehhcccceeeeeeecCCCCEEEEe-cCCc------------eEEEEecc--ccccc----------cccc
Confidence 4444 2211111 111445678899666655444 3311 22222111 12221 1223
Q ss_pred CccCCCceeeeecCCCceEEEEEeccCCCCccccCcccceeeccCCCCCCCCceEeEeeceeEE-EEEecCCceEEEeee
Q 004475 239 SVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFS-VSWCDDSLALVNETW 317 (751)
Q Consensus 239 ~~~~~~~~~~~spdG~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~-~~~spdg~~l~~~~~ 317 (751)
+...+--.+.|+|+|++ ++.-+ ....+-++|++. =-..+.++..++.+. ++||-||++|+-+++
T Consensus 187 AH~snCicI~f~p~Gry-fA~Gs------------ADAlvSLWD~~E--LiC~R~isRldwpVRTlSFS~dg~~lASaSE 251 (313)
T KOG1407|consen 187 AHPSNCICIEFDPDGRY-FATGS------------ADALVSLWDVDE--LICERCISRLDWPVRTLSFSHDGRMLASASE 251 (313)
T ss_pred cCCcceEEEEECCCCce-Eeecc------------ccceeeccChhH--hhhheeeccccCceEEEEeccCcceeeccCc
Confidence 33344568999999999 55533 123566777741 124567778899999 999999999998763
Q ss_pred ecccceeEEEecCCCCCCcceeeeeccc-ccccCCCCCCCeeeCCCCCEEEEeeeec
Q 004475 318 YKTSQTRTWLVCPGSKDVAPRVLFDRVF-ENVYSDPGSPMMTRTSTGTNVIAKIKKE 373 (751)
Q Consensus 318 ~~~~~~~l~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~spDG~~l~~~~~~~ 373 (751)
. .-|=+...++| .++++..- ...+. ++|.|.--.|+|+..++
T Consensus 252 D----h~IDIA~vetG----d~~~eI~~~~~t~t------VAWHPk~~LLAyA~ddk 294 (313)
T KOG1407|consen 252 D----HFIDIAEVETG----DRVWEIPCEGPTFT------VAWHPKRPLLAYACDDK 294 (313)
T ss_pred c----ceEEeEecccC----CeEEEeeccCCcee------EEecCCCceeeEEecCC
Confidence 2 23445566665 23332211 11112 88999999999999654
No 179
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=99.07 E-value=4.4e-08 Score=105.07 Aligned_cols=270 Identities=18% Similarity=0.130 Sum_probs=151.0
Q ss_pred cceeecCCCCeEEEEEeecccccccCCceeEEEEEcCCCCeeeccCCCCccccceeeeeEEecCCcEEEEeecCCCCCCC
Q 004475 34 NFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRDPP 113 (751)
Q Consensus 34 ~~p~~SPDG~~iaf~~~~~~~~~~~~~~~~l~i~~~~~g~~~~lt~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~ 113 (751)
...++||||++|||....+ ++....|+++|+++|+...- .-.. .....+.|++||+.++|+.........
T Consensus 127 ~~~~~Spdg~~la~~~s~~-----G~e~~~l~v~Dl~tg~~l~d--~i~~---~~~~~~~W~~d~~~~~y~~~~~~~~~~ 196 (414)
T PF02897_consen 127 GGFSVSPDGKRLAYSLSDG-----GSEWYTLRVFDLETGKFLPD--GIEN---PKFSSVSWSDDGKGFFYTRFDEDQRTS 196 (414)
T ss_dssp EEEEETTTSSEEEEEEEET-----TSSEEEEEEEETTTTEEEEE--EEEE---EESEEEEECTTSSEEEEEECSTTTSS-
T ss_pred eeeeECCCCCEEEEEecCC-----CCceEEEEEEECCCCcCcCC--cccc---cccceEEEeCCCCEEEEEEeCcccccc
Confidence 3678999999999987532 25568999999999853321 1010 012248999999999999654322100
Q ss_pred CCCCCCCCCceeeccccccccchhhhhccCCccchhhhhhheeeEEEEEcC-CCCc--eecCCC---ce-EEeeeeCCCC
Q 004475 114 KKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DGTA--KDFGTP---AV-YTAVEPSPDQ 186 (751)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~G~~--~~lt~~---~~-~~~~~~SpDG 186 (751)
......+||+..+ ++.. +.|-.. .. ...+..|+||
T Consensus 197 --------------------------------------~~~~~~~v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~ 238 (414)
T PF02897_consen 197 --------------------------------------DSGYPRQVYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDG 238 (414)
T ss_dssp --------------------------------------CCGCCEEEEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTS
T ss_pred --------------------------------------cCCCCcEEEEEECCCChHhCeeEEeecCCCcEEEEEEecCcc
Confidence 0001268999988 5522 344322 33 5688999999
Q ss_pred ceEEEEEecCCcccccccCCCceeEEEEeCCCc-----eeeeeccCCCCCCCCCccCCccCCCceeeeecCCCceEEEEE
Q 004475 187 KYVLITSMHRPYSYKVPCARFSQKVQVWTTDGK-----LVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVE 261 (751)
Q Consensus 187 ~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~-----~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~spdG~~~i~~~~ 261 (751)
++|++.+..... .+++|+.++..+ ..+.+..... +. .......|.. +++..
T Consensus 239 ~~l~i~~~~~~~---------~s~v~~~d~~~~~~~~~~~~~l~~~~~-------------~~-~~~v~~~~~~-~yi~T 294 (414)
T PF02897_consen 239 RYLFISSSSGTS---------ESEVYLLDLDDGGSPDAKPKLLSPRED-------------GV-EYYVDHHGDR-LYILT 294 (414)
T ss_dssp SEEEEEEESSSS---------EEEEEEEECCCTTTSS-SEEEEEESSS-------------S--EEEEEEETTE-EEEEE
T ss_pred cEEEEEEEcccc---------CCeEEEEeccccCCCcCCcEEEeCCCC-------------ce-EEEEEccCCE-EEEee
Confidence 999988765421 268999999864 3444432211 11 1112222555 44433
Q ss_pred eccCCCCccccCcccceeeccCCCCCCCCce-EeEeeceeEE-EEEecCCceEEEeeeecccceeEEEecCC-CCCCcce
Q 004475 262 AQDRGDANVEVSPRDIIYTQPAEPAEGEKPE-ILHKLDLRFS-VSWCDDSLALVNETWYKTSQTRTWLVCPG-SKDVAPR 338 (751)
Q Consensus 262 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~-~l~~~~~~~~-~~~spdg~~l~~~~~~~~~~~~l~~~~~~-~~~~~~~ 338 (751)
. ....++.|+.++++........ .+........ -.++..+.+|++.... ....+|.++++. +. ...
T Consensus 295 n--------~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~Lvl~~~~-~~~~~l~v~~~~~~~--~~~ 363 (414)
T PF02897_consen 295 N--------DDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVSLFKDYLVLSYRE-NGSSRLRVYDLDDGK--ESR 363 (414)
T ss_dssp ---------TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEEEETTEEEEEEEE-TTEEEEEEEETT-TE--EEE
T ss_pred C--------CCCCCcEEEEecccccccccceeEEcCCCCceeEEEEEEECCEEEEEEEE-CCccEEEEEECCCCc--EEe
Confidence 1 2224468888888622111122 4555444333 4566777887766643 455789999998 52 222
Q ss_pred eeeecccccccCCCCCCCeeeCCCCCEEEEeeeecCCcceEEEEccCCCCCCCCCceeEEEecCCCceeEE
Q 004475 339 VLFDRVFENVYSDPGSPMMTRTSTGTNVIAKIKKENDEQIYILLNGRGFTPEGNIPFLDLFDINTGSKERI 409 (751)
Q Consensus 339 ~l~~~~~~~~~~~~~~~~~~~spDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l 409 (751)
.+.......+.. ....+++..+.|.... -.....++.+|+++++.+.+
T Consensus 364 ~~~~p~~g~v~~------~~~~~~~~~~~~~~ss-----------------~~~P~~~y~~d~~t~~~~~~ 411 (414)
T PF02897_consen 364 EIPLPEAGSVSG------VSGDFDSDELRFSYSS-----------------FTTPPTVYRYDLATGELTLL 411 (414)
T ss_dssp EEESSSSSEEEE------EES-TT-SEEEEEEEE-----------------TTEEEEEEEEETTTTCEEEE
T ss_pred eecCCcceEEec------cCCCCCCCEEEEEEeC-----------------CCCCCEEEEEECCCCCEEEE
Confidence 222211111111 3345667766666532 12455899999999988765
No 180
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=99.06 E-value=2.3e-07 Score=93.67 Aligned_cols=94 Identities=14% Similarity=-0.055 Sum_probs=57.1
Q ss_pred ceeEEeecCCCCCCCCcccccCCCCcccccceeecCCCCeEEEEEeecccccccCCceeEEEEEcCCCCee-eccCCCCc
Q 004475 5 TGIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAK-PLFESPDI 83 (751)
Q Consensus 5 ~~~~~~~~~~~~~~g~~~~l~~~~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~~~~~l~i~~~~~g~~~-~lt~~~~~ 83 (751)
..|+++|..+ ++..... +.+..-.. .+||||+.|+.+...-.....+.....|-++|+++.+.. .|...+..
T Consensus 27 ~~v~ViD~~~----~~v~g~i--~~G~~P~~-~~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p 99 (352)
T TIGR02658 27 TQVYTIDGEA----GRVLGMT--DGGFLPNP-VVASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGP 99 (352)
T ss_pred ceEEEEECCC----CEEEEEE--EccCCCce-eECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCc
Confidence 5788999887 7765433 34443444 599999999776641111112235578889999998743 33222211
Q ss_pred cc--cceeeeeEEecCCcEEEEee
Q 004475 84 CL--NAVFGSFVWVNNSTLLIFTI 105 (751)
Q Consensus 84 ~~--~~~~~~~~wspDg~~l~~~~ 105 (751)
.+ -..-..++.||||++|++..
T Consensus 100 ~~~~~~~~~~~~ls~dgk~l~V~n 123 (352)
T TIGR02658 100 RFLVGTYPWMTSLTPDNKTLLFYQ 123 (352)
T ss_pred hhhccCccceEEECCCCCEEEEec
Confidence 10 00123679999999999773
No 181
>PTZ00421 coronin; Provisional
Probab=99.06 E-value=9.3e-08 Score=102.54 Aligned_cols=174 Identities=12% Similarity=0.073 Sum_probs=97.7
Q ss_pred cCCC-ceEEeeeeCCCCceEEEEEecCCcccccccCCCceeEEEEeCCCceeeeeccCCCCCCCCCccCCccCCCceeee
Q 004475 171 FGTP-AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISW 249 (751)
Q Consensus 171 lt~~-~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (751)
+..+ ..+..++|+|++..++++... ...+.+||+.+++..... ......+..++|
T Consensus 121 L~gH~~~V~~l~f~P~~~~iLaSgs~------------DgtVrIWDl~tg~~~~~l------------~~h~~~V~sla~ 176 (493)
T PTZ00421 121 LQGHTKKVGIVSFHPSAMNVLASAGA------------DMVVNVWDVERGKAVEVI------------KCHSDQITSLEW 176 (493)
T ss_pred ecCCCCcEEEEEeCcCCCCEEEEEeC------------CCEEEEEECCCCeEEEEE------------cCCCCceEEEEE
Confidence 3334 667889999998544444332 346889999876543211 111233668999
Q ss_pred ecCCCceEEEEEeccCCCCccccCcccceeeccCCCCCCCCceEeEeece-eEE-EEEecCCceEEEeeeecccceeEEE
Q 004475 250 RADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDL-RFS-VSWCDDSLALVNETWYKTSQTRTWL 327 (751)
Q Consensus 250 spdG~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~-~~~-~~~spdg~~l~~~~~~~~~~~~l~~ 327 (751)
+|||+. |+..+ ..+.|.++|+.. +.....+....+ ... ..|++++..|+...........|.+
T Consensus 177 spdG~l-Latgs------------~Dg~IrIwD~rs--g~~v~tl~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~Vkl 241 (493)
T PTZ00421 177 NLDGSL-LCTTS------------KDKKLNIIDPRD--GTIVSSVEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQIML 241 (493)
T ss_pred ECCCCE-EEEec------------CCCEEEEEECCC--CcEEEEEecCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEE
Confidence 999987 55433 235788888741 222233333322 234 7899998877654322222345666
Q ss_pred ecCCCCCCcceeeeecccccccCCCCCCCeeeCCCCCEEEEeeeecCCcceEEEEccCCCCCCCCCceeEEEecCCCcee
Q 004475 328 VCPGSKDVAPRVLFDRVFENVYSDPGSPMMTRTSTGTNVIAKIKKENDEQIYILLNGRGFTPEGNIPFLDLFDINTGSKE 407 (751)
Q Consensus 328 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~spDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~ 407 (751)
.|+... ..+..+....... ....+.|++|++.|+..+.. ...|+.||+.+++..
T Consensus 242 WDlr~~-~~p~~~~~~d~~~-----~~~~~~~d~d~~~L~lggkg--------------------Dg~Iriwdl~~~~~~ 295 (493)
T PTZ00421 242 WDTRKM-ASPYSTVDLDQSS-----ALFIPFFDEDTNLLYIGSKG--------------------EGNIRCFELMNERLT 295 (493)
T ss_pred EeCCCC-CCceeEeccCCCC-----ceEEEEEcCCCCEEEEEEeC--------------------CCeEEEEEeeCCceE
Confidence 666543 2222222211111 11126689999988776621 126888898877654
Q ss_pred EE
Q 004475 408 RI 409 (751)
Q Consensus 408 ~l 409 (751)
..
T Consensus 296 ~~ 297 (493)
T PTZ00421 296 FC 297 (493)
T ss_pred EE
Confidence 33
No 182
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.06 E-value=3.2e-08 Score=102.40 Aligned_cols=316 Identities=9% Similarity=-0.013 Sum_probs=149.8
Q ss_pred ceeEEeecCCCCCCCCcccccCCCCccc-ccceeecCCCCeEEEEEeecccccccCCceeEEEEEcCCCCe-eeccCCCC
Q 004475 5 TGIGIHRLLPDDSLGPEKEVHGYPDGAK-INFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEA-KPLFESPD 82 (751)
Q Consensus 5 ~~~~~~~~~~~~~~g~~~~l~~~~~~~~-~~~p~~SPDG~~iaf~~~~~~~~~~~~~~~~l~i~~~~~g~~-~~lt~~~~ 82 (751)
..|.++|..+ .+..... +.+.. .....+||||++++.. .+ .+.|-++|+.+++. +++-.+.
T Consensus 16 ~~v~viD~~t----~~~~~~i--~~~~~~h~~~~~s~Dgr~~yv~-~r---------dg~vsviD~~~~~~v~~i~~G~- 78 (369)
T PF02239_consen 16 GSVAVIDGAT----NKVVARI--PTGGAPHAGLKFSPDGRYLYVA-NR---------DGTVSVIDLATGKVVATIKVGG- 78 (369)
T ss_dssp TEEEEEETTT-----SEEEEE--E-STTEEEEEE-TT-SSEEEEE-ET---------TSEEEEEETTSSSEEEEEE-SS-
T ss_pred CEEEEEECCC----CeEEEEE--cCCCCceeEEEecCCCCEEEEE-cC---------CCeEEEEECCcccEEEEEecCC-
Confidence 3678888877 6654322 22222 2446799999987554 21 25899999998874 3442222
Q ss_pred ccccceeeeeEEecCCcEEEEeecCCCCCCCCCCCCCCCCceeeccccccccchhhhhccCCccchhhhhhheeeEEEEE
Q 004475 83 ICLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLG 162 (751)
Q Consensus 83 ~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 162 (751)
....+++||||++|+..... ..++.++
T Consensus 79 -----~~~~i~~s~DG~~~~v~n~~------------------------------------------------~~~v~v~ 105 (369)
T PF02239_consen 79 -----NPRGIAVSPDGKYVYVANYE------------------------------------------------PGTVSVI 105 (369)
T ss_dssp -----EEEEEEE--TTTEEEEEEEE------------------------------------------------TTEEEEE
T ss_pred -----CcceEEEcCCCCEEEEEecC------------------------------------------------CCceeEe
Confidence 24678999999999877331 1467777
Q ss_pred cC-CCCc-eecCCC--------ceEEeeeeCCCCceEEEEEecCCcccccccCCCceeEEEEeCCCceeeeeccCCCCCC
Q 004475 163 SL-DGTA-KDFGTP--------AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAED 232 (751)
Q Consensus 163 ~~-~G~~-~~lt~~--------~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~ 232 (751)
|. +.++ +.+... ..+..+.-||+...++++..+ ..+++++|.............
T Consensus 106 D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd------------~~~I~vVdy~d~~~~~~~~i~---- 169 (369)
T PF02239_consen 106 DAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKD------------TGEIWVVDYSDPKNLKVTTIK---- 169 (369)
T ss_dssp ETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETT------------TTEEEEEETTTSSCEEEEEEE----
T ss_pred ccccccceeecccccccccccCCCceeEEecCCCCEEEEEEcc------------CCeEEEEEeccccccceeeec----
Confidence 76 4433 222111 234466678888877666544 347888887643222111111
Q ss_pred CCCccCCccCCCceeeeecCCCceEEEEEeccCCCCccccCcccceeeccCCCCCCCCceEeEe-eceeEE---EEE-ec
Q 004475 233 IPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHK-LDLRFS---VSW-CD 307 (751)
Q Consensus 233 ~~~~~~~~~~~~~~~~~spdG~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~-~~~~~~---~~~-sp 307 (751)
....+....|+|||+++++... ..+.+-+++.+ ......+.. ...... ..| .|
T Consensus 170 -------~g~~~~D~~~dpdgry~~va~~------------~sn~i~viD~~---~~k~v~~i~~g~~p~~~~~~~~php 227 (369)
T PF02239_consen 170 -------VGRFPHDGGFDPDGRYFLVAAN------------GSNKIAVIDTK---TGKLVALIDTGKKPHPGPGANFPHP 227 (369)
T ss_dssp ---------TTEEEEEE-TTSSEEEEEEG------------GGTEEEEEETT---TTEEEEEEE-SSSBEETTEEEEEET
T ss_pred -------ccccccccccCcccceeeeccc------------ccceeEEEeec---cceEEEEeeccccccccccccccCC
Confidence 1122347899999998444322 22366666654 222211111 111100 111 23
Q ss_pred CCceEEEeeeecccceeEE------EecCCCCCCcceeeeecccccccCCCCCCCeeeCCCCCEEEEeeeecCCcceEEE
Q 004475 308 DSLALVNETWYKTSQTRTW------LVCPGSKDVAPRVLFDRVFENVYSDPGSPMMTRTSTGTNVIAKIKKENDEQIYIL 381 (751)
Q Consensus 308 dg~~l~~~~~~~~~~~~l~------~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~spDG~~l~~~~~~~~~~~~~~~ 381 (751)
....++...........+. ..+... .+...........++ +..+||+++|++...-
T Consensus 228 ~~g~vw~~~~~~~~~~~~ig~~~v~v~d~~~--wkvv~~I~~~G~glF-------i~thP~s~~vwvd~~~--------- 289 (369)
T PF02239_consen 228 GFGPVWATSGLGYFAIPLIGTDPVSVHDDYA--WKVVKTIPTQGGGLF-------IKTHPDSRYVWVDTFL--------- 289 (369)
T ss_dssp TTEEEEEEEBSSSSEEEEEE--TTT-STTTB--TSEEEEEE-SSSS---------EE--TT-SEEEEE-TT---------
T ss_pred CcceEEeeccccceecccccCCccccchhhc--CeEEEEEECCCCcce-------eecCCCCccEEeeccC---------
Confidence 3222222111100000111 122222 111111111111111 6679999999887310
Q ss_pred EccCCCCCCCCCceeEEEecCCCceeEEee-ccchhhhhceeeeecCCcceeeccCCCEEEEEEecCCCCCeEEEEEcCC
Q 004475 382 LNGRGFTPEGNIPFLDLFDINTGSKERIWE-SNREKYFETAVALVFGQGEEDINLNQLKILTSKESKTEITQYHILSWPL 460 (751)
Q Consensus 382 ~~~~~~~~~~~~~~l~~~d~~~g~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~l~~~~~~~ 460 (751)
+ .....|.++|.++.+...-.. ..+. .+.. +.|++||+++.++.+.... .|.++|..+
T Consensus 290 ------~--~~~~~v~viD~~tl~~~~~i~~~~~~----~~~h-------~ef~~dG~~v~vS~~~~~~--~i~v~D~~T 348 (369)
T PF02239_consen 290 ------N--PDADTVQVIDKKTLKVVKTITPGPGK----RVVH-------MEFNPDGKEVWVSVWDGNG--AIVVYDAKT 348 (369)
T ss_dssp ---------SSHT-EEEEECCGTEEEE-HHHHHT------EEE-------EEE-TTSSEEEEEEE--TT--EEEEEETTT
T ss_pred ------C--CCCceEEEEECcCcceeEEEeccCCC----cEec-------cEECCCCCEEEEEEecCCC--EEEEEECCC
Confidence 0 125589999998875432211 1110 1222 4799999999998876554 899999888
Q ss_pred Ccee-Eee
Q 004475 461 KKSS-QIT 467 (751)
Q Consensus 461 g~~~-~lt 467 (751)
.++. +++
T Consensus 349 l~~~~~i~ 356 (369)
T PF02239_consen 349 LKEKKRIP 356 (369)
T ss_dssp TEEEEEEE
T ss_pred cEEEEEEE
Confidence 7644 443
No 183
>PF00561 Abhydrolase_1: alpha/beta hydrolase fold A web page of Esterases and alpha/beta hydrolases.; InterPro: IPR000073 The alpha/beta hydrolase fold [] is common to a number of hydrolytic enzymes of widely differing phylogenetic origin and catalytic function. The core of each enzyme is an alpha/beta-sheet (rather than a barrel), containing 8 strands connected by helices []. The enzymes are believed to have diverged from a common ancestor, preserving the arrangement of the catalytic residues. All have a catalytic triad, the elements of which are borne on loops, which are the best conserved structural features of the fold. Esterase (EST) from Pseudomonas putida is a member of the alpha/beta hydrolase fold superfamily of enzymes []. In most of the family members the beta-strands are parallels, but some have an inversion of the first strands, which gives it an antiparallel orientation. The catalytic triad residues are presented on loops. One of these is the nucleophile elbow and is the most conserved feature of the fold. Some other members lack one or all of the catalytic residues. Some members are therefore inactive but others are involved in surface recognition. The ESTHER database [] gathers and annotates all the published information related to gene and protein sequences of this superfamily []. This entry represents fold-1 of alpha/beta hydrolase.; PDB: 2VAT_E 2VAX_C 2VAV_H 2PSJ_A 2PSH_B 2PSE_A 2PSF_A 2PSD_A 2EDA_A 1CIJ_A ....
Probab=99.04 E-value=2.7e-10 Score=111.63 Aligned_cols=164 Identities=23% Similarity=0.237 Sum_probs=102.2
Q ss_pred eEEEEcCCCCCCCCCCCCC--CchhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEc
Q 004475 555 FAVLAGPSIPIIGEGDKLP--NDRFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIAR 632 (751)
Q Consensus 555 ~~v~~~~~~~~~g~g~~~~--~~~~~~~~~~d~~~~v~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~ 632 (751)
|.|++ .+.+|.|.+.. ......-..+|+.+.++.+++.-.+ +++.++||||||.+++.+++.+|++++++|+.
T Consensus 1 f~vi~---~d~rG~g~S~~~~~~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~vG~S~Gg~~~~~~a~~~p~~v~~lvl~ 75 (230)
T PF00561_consen 1 FDVIL---FDLRGFGYSSPHWDPDFPDYTTDDLAADLEALREALGI--KKINLVGHSMGGMLALEYAAQYPERVKKLVLI 75 (230)
T ss_dssp EEEEE---EECTTSTTSSSCCGSGSCTHCHHHHHHHHHHHHHHHTT--SSEEEEEETHHHHHHHHHHHHSGGGEEEEEEE
T ss_pred CEEEE---EeCCCCCCCCCCccCCcccccHHHHHHHHHHHHHHhCC--CCeEEEEECCChHHHHHHHHHCchhhcCcEEE
Confidence 56777 55667777653 1233334466677777777765333 45999999999999999999999999999999
Q ss_pred cCCC--C----CCCCcc-Ccccc---------c--------cc-----ch-----------------hh-----------
Q 004475 633 SGSY--N----KTLTPF-GFQTE---------F--------RT-----LW-----------------EA----------- 655 (751)
Q Consensus 633 ~~~~--d----~~~~~~-~~~~~---------~--------~~-----~~-----------------~~----------- 655 (751)
++.. . ...... ..... . .. .+ ..
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (230)
T PF00561_consen 76 SPPPDLPDGLWNRIWPRGNLQGQLLDNFFNFLSDPIKPLLGRWPKQFFAYDREFVEDFLKQFQSQQYARFAETDAFDNMF 155 (230)
T ss_dssp SESSHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred eeeccchhhhhHHHHhhhhhhhhHHHhhhccccccchhhhhhhhhheeeccCccccchhhccchhhhhHHHHHHHHhhhc
Confidence 9851 0 000000 00000 0 00 00 00
Q ss_pred ---HHHHHhcCcccccCCCCCCEEEEEcCCCCCCCCChHHHHHHHHHHHhCCCcEEEEEeCCCCCcCCccccHHHHHH
Q 004475 656 ---TNVYIEMSPITHANKIKKPILIIHGEVDDKVGLFPMQAERFFDALKGHGALSRLVLLPFEHHVYAARENVMHVIW 730 (751)
Q Consensus 656 ---~~~~~~~~~~~~~~~~~~P~li~~G~~D~~vp~~~~~~~~~~~~l~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~ 730 (751)
...+........+.++++|+|+++|+.|.++| +.....+.+.+. ..++++++++||... .+...+..+
T Consensus 156 ~~~~~~~~~~~~~~~l~~i~~p~l~i~~~~D~~~p--~~~~~~~~~~~~----~~~~~~~~~~GH~~~-~~~~~~~~~ 226 (230)
T PF00561_consen 156 WNALGYFSVWDPSPALSNIKVPTLIIWGEDDPLVP--PESSEQLAKLIP----NSQLVLIEGSGHFAF-LEGPDEFNE 226 (230)
T ss_dssp HHHHHHHHHHHHHHHHTTTTSEEEEEEETTCSSSH--HHHHHHHHHHST----TEEEEEETTCCSTHH-HHSHHHHHH
T ss_pred cccccccccccccccccccCCCeEEEEeCCCCCCC--HHHHHHHHHhcC----CCEEEECCCCChHHH-hcCHHhhhh
Confidence 00011111223456799999999999999998 777777554443 478999999999865 333333333
No 184
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.04 E-value=1.4e-08 Score=95.65 Aligned_cols=103 Identities=17% Similarity=0.208 Sum_probs=69.0
Q ss_pred cccceeecCCCCeEEEEEeecccccccCCceeEEEEEcCCCCeeeccCCCCccccceeeeeEEecCCcEEEEeecCCCCC
Q 004475 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRD 111 (751)
Q Consensus 32 ~~~~p~~SPDG~~iaf~~~~~~~~~~~~~~~~l~i~~~~~g~~~~lt~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~ 111 (751)
.+...-|+.|.-+|..+.. ..+-|.++++..-+-.--.+.. .+++....|||||+.|+.+++
T Consensus 50 ki~yieW~ads~~ilC~~y---------k~~~vqvwsl~Qpew~ckIdeg----~agls~~~WSPdgrhiL~tse----- 111 (447)
T KOG4497|consen 50 KIVYIEWKADSCHILCVAY---------KDPKVQVWSLVQPEWYCKIDEG----QAGLSSISWSPDGRHILLTSE----- 111 (447)
T ss_pred Hhhheeeeccceeeeeeee---------ccceEEEEEeecceeEEEeccC----CCcceeeeECCCcceEeeeec-----
Confidence 5788999999999988753 2356666676555433322222 225778899999999987743
Q ss_pred CCCCCCCCCCCceeeccccccccchhhhhccCCccchhhhhhheeeEEEEEcC-CCCceecCCC-ceEEeeeeCCCCceE
Q 004475 112 PPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DGTAKDFGTP-AVYTAVEPSPDQKYV 189 (751)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~G~~~~lt~~-~~~~~~~~SpDG~~i 189 (751)
....|-++.+ +.+...+..+ .....++|.|||++.
T Consensus 112 -------------------------------------------F~lriTVWSL~t~~~~~~~~pK~~~kg~~f~~dg~f~ 148 (447)
T KOG4497|consen 112 -------------------------------------------FDLRITVWSLNTQKGYLLPHPKTNVKGYAFHPDGQFC 148 (447)
T ss_pred -------------------------------------------ceeEEEEEEeccceeEEecccccCceeEEECCCCcee
Confidence 1135555666 4444444444 566899999999999
Q ss_pred EEEEec
Q 004475 190 LITSMH 195 (751)
Q Consensus 190 ~~~~~~ 195 (751)
++.+..
T Consensus 149 ai~sRr 154 (447)
T KOG4497|consen 149 AILSRR 154 (447)
T ss_pred eeeecc
Confidence 887654
No 185
>COG2382 Fes Enterochelin esterase and related enzymes [Inorganic ion transport and metabolism]
Probab=99.02 E-value=6e-09 Score=99.42 Aligned_cols=221 Identities=19% Similarity=0.161 Sum_probs=129.5
Q ss_pred ceEEEEEEcCCCceEEEEEEcCCCCCCCCCCCccEEEEEcCCCCcCcccCCcccCCCCccCCCC--chHHHHHHhCC---
Q 004475 480 QKEMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMT--PTSSLIFLARR--- 554 (751)
Q Consensus 480 ~~e~i~~~~~~~~~i~~~~~~P~~~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~G--- 554 (751)
..+.+.+.+.-..+...++|+|+++.+.. ++|+++++||--| ...+ ......+...|
T Consensus 68 ~~~~~~~~~~l~~~~~~vv~lppgy~~~~--k~pvl~~~DG~~~----------------~~~g~i~~~~dsli~~g~i~ 129 (299)
T COG2382 68 PVEEILYSSELLSERRRVVYLPPGYNPLE--KYPVLYLQDGQDW----------------FRSGRIPRILDSLIAAGEIP 129 (299)
T ss_pred chhhhhhhhhhccceeEEEEeCCCCCccc--cccEEEEeccHHH----------------HhcCChHHHHHHHHHcCCCC
Confidence 34555555554467888899999877654 5999999999421 1111 12233444443
Q ss_pred -eEEEEcCCCCCCCCCCCC-CCchhHHHHHHHHHHHHHHHHHcCC--CCCCcEEEEEeChHHHHHHHHHHhCCCceeEEE
Q 004475 555 -FAVLAGPSIPIIGEGDKL-PNDRFVEQLVSSAEAAVEEVVRRGV--ADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGI 630 (751)
Q Consensus 555 -~~v~~~~~~~~~g~g~~~-~~~~~~~~~~~d~~~~v~~l~~~~~--id~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v 630 (751)
-+++.+++.+..-..... .+..+...+.+ +.+=++.++.. -+.+.-+|+|.|+||.++++++.++|+.|..++
T Consensus 130 pai~vgid~~d~~~R~~~~~~n~~~~~~L~~---eLlP~v~~~yp~~~~a~~r~L~G~SlGG~vsL~agl~~Pe~FG~V~ 206 (299)
T COG2382 130 PAILVGIDYIDVKKRREELHCNEAYWRFLAQ---ELLPYVEERYPTSADADGRVLAGDSLGGLVSLYAGLRHPERFGHVL 206 (299)
T ss_pred CceEEecCCCCHHHHHHHhcccHHHHHHHHH---HhhhhhhccCcccccCCCcEEeccccccHHHHHHHhcCchhhceee
Confidence 445554553321111111 11223333333 44455555422 345678999999999999999999999999999
Q ss_pred EccCCCCCCCCccCcccccccchhhHHHHHhcCcccccCCCCCCEEEEEcCCCCCCCCChHHHHHHHHHHHhCCCcEEEE
Q 004475 631 ARSGSYNKTLTPFGFQTEFRTLWEATNVYIEMSPITHANKIKKPILIIHGEVDDKVGLFPMQAERFFDALKGHGALSRLV 710 (751)
Q Consensus 631 ~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~li~~G~~D~~vp~~~~~~~~~~~~l~~~~~~~~~~ 710 (751)
+.+|.++....... .....+.. .+....+.....-++...++.+.+ ....+++++.|..++.++.+.
T Consensus 207 s~Sps~~~~~~~~~---~~~~~~~~------l~~~~a~~~~~~~~l~~g~~~~~~----~~pNr~L~~~L~~~g~~~~yr 273 (299)
T COG2382 207 SQSGSFWWTPLDTQ---PQGEVAES------LKILHAIGTDERIVLTTGGEEGDF----LRPNRALAAQLEKKGIPYYYR 273 (299)
T ss_pred ccCCccccCccccc---cccchhhh------hhhhhccCccceEEeecCCccccc----cchhHHHHHHHHhcCCcceee
Confidence 99998775533211 11111110 111111222223233334444444 345678999999999999999
Q ss_pred EeCCCCCcCCccccHHHHHHHHHHHHHHHhc
Q 004475 711 LLPFEHHVYAARENVMHVIWETDRWLQKYCL 741 (751)
Q Consensus 711 ~~~~~~H~~~~~~~~~~~~~~~~~fl~~~l~ 741 (751)
.|+| ||.+. .+...+.++|...+.
T Consensus 274 e~~G-gHdw~------~Wr~~l~~~L~~l~~ 297 (299)
T COG2382 274 EYPG-GHDWA------WWRPALAEGLQLLLP 297 (299)
T ss_pred ecCC-CCchh------HhHHHHHHHHHHhhc
Confidence 9999 89864 344556666665543
No 186
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.01 E-value=9.5e-08 Score=102.78 Aligned_cols=251 Identities=13% Similarity=0.094 Sum_probs=148.5
Q ss_pred eeEEeecCCCCCCCCcccccCCCC-cccccceeecCCCCeEEEEEeecccccccCCceeEEEEEc-CCCCeeeccCCCCc
Q 004475 6 GIGIHRLLPDDSLGPEKEVHGYPD-GAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADA-ETGEAKPLFESPDI 83 (751)
Q Consensus 6 ~~~~~~~~~~~~~g~~~~l~~~~~-~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~~~~~l~i~~~-~~g~~~~lt~~~~~ 83 (751)
-|.++.+.+ ++.+.+..+.. ...+...+|||||++|+-. .....|+++++ +.+...+...+...
T Consensus 182 ~i~~~~~~~----~~~~~~~~l~~h~~~v~~~~fs~d~~~l~s~----------s~D~tiriwd~~~~~~~~~~l~gH~~ 247 (456)
T KOG0266|consen 182 LIRIWKLEG----IKSNLLRELSGHTRGVSDVAFSPDGSYLLSG----------SDDKTLRIWDLKDDGRNLKTLKGHST 247 (456)
T ss_pred cEEEeeccc----ccchhhccccccccceeeeEECCCCcEEEEe----------cCCceEEEeeccCCCeEEEEecCCCC
Confidence 456666655 44112222222 2368999999999987775 34578888888 44444333333221
Q ss_pred cccceeeeeEEecCCcEEEEeecCCCCCCCCCCCCCCCCceeeccccccccchhhhhccCCccchhhhhhheeeEEEEEc
Q 004475 84 CLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGS 163 (751)
Q Consensus 84 ~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 163 (751)
.+..++|+|+|+.|+..+.+ ..+.+++
T Consensus 248 ----~v~~~~f~p~g~~i~Sgs~D-------------------------------------------------~tvriWd 274 (456)
T KOG0266|consen 248 ----YVTSVAFSPDGNLLVSGSDD-------------------------------------------------GTVRIWD 274 (456)
T ss_pred ----ceEEEEecCCCCEEEEecCC-------------------------------------------------CcEEEEe
Confidence 36789999999877776443 4677778
Q ss_pred C-CCCce-ecCCC-ceEEeeeeCCCCceEEEEEecCCcccccccCCCceeEEEEeCCCceeeeeccCCCCCCCCCccCCc
Q 004475 164 L-DGTAK-DFGTP-AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSV 240 (751)
Q Consensus 164 ~-~G~~~-~lt~~-~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~ 240 (751)
+ +|+.. .|..+ ..+..++|++||+.|+..+. ...+.+||+.++..+.+......+..
T Consensus 275 ~~~~~~~~~l~~hs~~is~~~f~~d~~~l~s~s~-------------d~~i~vwd~~~~~~~~~~~~~~~~~~------- 334 (456)
T KOG0266|consen 275 VRTGECVRKLKGHSDGISGLAFSPDGNLLVSASY-------------DGTIRVWDLETGSKLCLKLLSGAENS------- 334 (456)
T ss_pred ccCCeEEEeeeccCCceEEEEECCCCCEEEEcCC-------------CccEEEEECCCCceeeeecccCCCCC-------
Confidence 8 56544 44444 78889999999999987643 34688999998874311111111111
Q ss_pred cCCCceeeeecCCCceEEEEEeccCCCCccccCcccceeeccCCCCCCCCceEeEeece---eEE-EEEecCCceEEEee
Q 004475 241 REGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDL---RFS-VSWCDDSLALVNET 316 (751)
Q Consensus 241 ~~~~~~~~~spdG~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~---~~~-~~~spdg~~l~~~~ 316 (751)
. -+..+.|+|||++ ++... ....+.++++.. +........... -+. +..+++|++|+-..
T Consensus 335 ~-~~~~~~fsp~~~~-ll~~~------------~d~~~~~w~l~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~sg~ 398 (456)
T KOG0266|consen 335 A-PVTSVQFSPNGKY-LLSAS------------LDRTLKLWDLRS--GKSVGTYTGHSNLVRCIFSPTLSTGGKLIYSGS 398 (456)
T ss_pred C-ceeEEEECCCCcE-EEEec------------CCCeEEEEEccC--CcceeeecccCCcceeEecccccCCCCeEEEEe
Confidence 0 1458899999998 44432 234666666631 222233322222 122 55588999888766
Q ss_pred eecccceeEEEecCCCCCCcceeeeecccccccCCCCCCCeeeCCCCCEEEEee
Q 004475 317 WYKTSQTRTWLVCPGSKDVAPRVLFDRVFENVYSDPGSPMMTRTSTGTNVIAKI 370 (751)
Q Consensus 317 ~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~spDG~~l~~~~ 370 (751)
. ...|+..+..++ .....+..+....+.. ++|+|....+++.+
T Consensus 399 ~----d~~v~~~~~~s~-~~~~~l~~h~~~~~~~------~~~~~~~~~~~s~s 441 (456)
T KOG0266|consen 399 E----DGSVYVWDSSSG-GILQRLEGHSKAAVSD------LSSHPTENLIASSS 441 (456)
T ss_pred C----CceEEEEeCCcc-chhhhhcCCCCCceec------cccCCCcCeeeecC
Confidence 3 246777777764 2222232221111111 66888888777766
No 187
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=98.99 E-value=2.9e-08 Score=108.37 Aligned_cols=203 Identities=15% Similarity=0.166 Sum_probs=112.5
Q ss_pred cccceeecCCCCeEEEEEeecccccccCCceeEEEEEcCCC--------CeeeccCCCCccccceeeeeEEecCCcEEEE
Q 004475 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETG--------EAKPLFESPDICLNAVFGSFVWVNNSTLLIF 103 (751)
Q Consensus 32 ~~~~p~~SPDG~~iaf~~~~~~~~~~~~~~~~l~i~~~~~g--------~~~~lt~~~~~~~~~~~~~~~wspDg~~l~~ 103 (751)
.+.....||||.++|.-.. ..+++..||-.+.-.. -+++|+....+ .+.+..+.|||||++||+
T Consensus 15 ~IfSIdv~pdg~~~aTgGq------~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h--~~sv~CVR~S~dG~~lAs 86 (942)
T KOG0973|consen 15 SIFSIDVHPDGVKFATGGQ------VLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDH--DGSVNCVRFSPDGSYLAS 86 (942)
T ss_pred eEEEEEecCCceeEecCCc------cccccceeeccccccchhhhhhcccchhheeeccc--cCceeEEEECCCCCeEee
Confidence 4678999999999998321 1122333664433211 13444444332 224667889999999999
Q ss_pred eecCCCCCCCCCCCCCCCCceeeccccccccchhhhhccCCccchhhhhhheeeEEEEEc------C---CC--------
Q 004475 104 TIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGS------L---DG-------- 166 (751)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~------~---~G-------- 166 (751)
.+++.- ..||... + +|
T Consensus 87 GSDD~~-----------------------------------------------v~iW~~~~~~~~~~fgs~g~~~~vE~w 119 (942)
T KOG0973|consen 87 GSDDRL-----------------------------------------------VMIWERAEIGSGTVFGSTGGAKNVESW 119 (942)
T ss_pred ccCcce-----------------------------------------------EEEeeecccCCccccccccccccccee
Confidence 876521 1122221 0 01
Q ss_pred -CceecCCC-ceEEeeeeCCCCceEEEEEecCCcccccccCCCceeEEEEeCCCcee-eeeccCCCCCCCCCccCCccCC
Q 004475 167 -TAKDFGTP-AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLV-RELCDLPPAEDIPVCYNSVREG 243 (751)
Q Consensus 167 -~~~~lt~~-~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~-~~l~~~~~~~~~~~~~~~~~~~ 243 (751)
....+-.+ .++.++.||||+++++-.+.+ +.+.+|+..+-+. +.+-.+.. -
T Consensus 120 k~~~~l~~H~~DV~Dv~Wsp~~~~lvS~s~D-------------nsViiwn~~tF~~~~vl~~H~s-------------~ 173 (942)
T KOG0973|consen 120 KVVSILRGHDSDVLDVNWSPDDSLLVSVSLD-------------NSVIIWNAKTFELLKVLRGHQS-------------L 173 (942)
T ss_pred eEEEEEecCCCccceeccCCCccEEEEeccc-------------ceEEEEccccceeeeeeecccc-------------c
Confidence 01122234 788899999999998876554 3578898876532 33322222 2
Q ss_pred CceeeeecCCCceEEEEEeccCCCCccccCcccceeeccCCCCCCCCceEeEe------eceeEE-EEEecCCceEEEee
Q 004475 244 MRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHK------LDLRFS-VSWCDDSLALVNET 316 (751)
Q Consensus 244 ~~~~~~spdG~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~------~~~~~~-~~~spdg~~l~~~~ 316 (751)
+.+++|.|-|++ ++-.+ ....|-++.+.+ -+..+.+++ ..-.+. ++|||||++|+...
T Consensus 174 VKGvs~DP~Gky-~ASqs------------dDrtikvwrt~d--w~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~n 238 (942)
T KOG0973|consen 174 VKGVSWDPIGKY-FASQS------------DDRTLKVWRTSD--WGIEKSITKPFEESPLTTFFLRLSWSPDGHHLASPN 238 (942)
T ss_pred ccceEECCccCe-eeeec------------CCceEEEEEccc--ceeeEeeccchhhCCCcceeeecccCCCcCeecchh
Confidence 447899999998 55533 112344444321 112223332 112234 89999999998765
Q ss_pred eecccceeEEEecC
Q 004475 317 WYKTSQTRTWLVCP 330 (751)
Q Consensus 317 ~~~~~~~~l~~~~~ 330 (751)
...+....+-+++-
T Consensus 239 A~n~~~~~~~IieR 252 (942)
T KOG0973|consen 239 AVNGGKSTIAIIER 252 (942)
T ss_pred hccCCcceeEEEec
Confidence 33333334444443
No 188
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=98.98 E-value=3.1e-07 Score=85.64 Aligned_cols=221 Identities=10% Similarity=0.098 Sum_probs=133.1
Q ss_pred eEEEEEcC-CC-CceecCCC-ceEEeeeeCCCCceEEEEEecCCcccccccCCCceeEEEEeCCCceeeeeccCCCCCCC
Q 004475 157 AQLVLGSL-DG-TAKDFGTP-AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDI 233 (751)
Q Consensus 157 ~~l~~~~~-~G-~~~~lt~~-~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~ 233 (751)
+.|.++|. ++ +..-++-+ ..+...+|||.|++|+--..++ ... +|++.+.+.+-. ...
T Consensus 77 GklIvWDs~TtnK~haipl~s~WVMtCA~sPSg~~VAcGGLdN-----------~Cs--iy~ls~~d~~g~------~~v 137 (343)
T KOG0286|consen 77 GKLIVWDSFTTNKVHAIPLPSSWVMTCAYSPSGNFVACGGLDN-----------KCS--IYPLSTRDAEGN------VRV 137 (343)
T ss_pred CeEEEEEcccccceeEEecCceeEEEEEECCCCCeEEecCcCc-----------eeE--EEeccccccccc------cee
Confidence 57888888 66 66666555 7888999999999998765443 223 444443211100 000
Q ss_pred CCccCCccCCCceeeeecCCCceEEEEEeccCCCCccccCcccceeeccCCCCCCCCceEeEeeceeEE-EEEec-CCce
Q 004475 234 PVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFS-VSWCD-DSLA 311 (751)
Q Consensus 234 ~~~~~~~~~~~~~~~~spdG~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~-~~~sp-dg~~ 311 (751)
..-+.....++..+.|-+|+. |+-.+ ......++|++. +........+.+.+. ++++| +++.
T Consensus 138 ~r~l~gHtgylScC~f~dD~~--ilT~S------------GD~TCalWDie~--g~~~~~f~GH~gDV~slsl~p~~~nt 201 (343)
T KOG0286|consen 138 SRELAGHTGYLSCCRFLDDNH--ILTGS------------GDMTCALWDIET--GQQTQVFHGHTGDVMSLSLSPSDGNT 201 (343)
T ss_pred eeeecCccceeEEEEEcCCCc--eEecC------------CCceEEEEEccc--ceEEEEecCCcccEEEEecCCCCCCe
Confidence 011223334566888888775 44433 234678888862 334444555677777 89999 8998
Q ss_pred EEEeeeecccceeEEEecCCCCCCcceeeeecccccccCCCCCCCeeeCCCCCEEEEeeeecCCcceEEEEccCCCCCCC
Q 004475 312 LVNETWYKTSQTRTWLVCPGSKDVAPRVLFDRVFENVYSDPGSPMMTRTSTGTNVIAKIKKENDEQIYILLNGRGFTPEG 391 (751)
Q Consensus 312 l~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~spDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 391 (751)
++-.. ......||-+. . +..++.+.++..++.. +.|-|+|..++..+.+
T Consensus 202 FvSg~--cD~~aklWD~R--~--~~c~qtF~ghesDINs------v~ffP~G~afatGSDD------------------- 250 (343)
T KOG0286|consen 202 FVSGG--CDKSAKLWDVR--S--GQCVQTFEGHESDINS------VRFFPSGDAFATGSDD------------------- 250 (343)
T ss_pred EEecc--cccceeeeecc--C--cceeEeecccccccce------EEEccCCCeeeecCCC-------------------
Confidence 77654 23334566544 3 2446777666665554 8899999888777632
Q ss_pred CCceeEEEecCCCceeEEeeccchhhhhceeeeecCCcceeeccCCCEEEEEEecCCCCCeEEEEEc
Q 004475 392 NIPFLDLFDINTGSKERIWESNREKYFETAVALVFGQGEEDINLNQLKILTSKESKTEITQYHILSW 458 (751)
Q Consensus 392 ~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~l~~~~~ 458 (751)
...++||+-......+++.+.. ..+...++||..|+.|+.-+.. ....++|.
T Consensus 251 --~tcRlyDlRaD~~~a~ys~~~~---------~~gitSv~FS~SGRlLfagy~d----~~c~vWDt 302 (343)
T KOG0286|consen 251 --ATCRLYDLRADQELAVYSHDSI---------ICGITSVAFSKSGRLLFAGYDD----FTCNVWDT 302 (343)
T ss_pred --ceeEEEeecCCcEEeeeccCcc---------cCCceeEEEcccccEEEeeecC----CceeEeec
Confidence 3677889887777677765432 1223346888888644433322 23556664
No 189
>KOG3847 consensus Phospholipase A2 (platelet-activating factor acetylhydrolase in humans) [Lipid transport and metabolism]
Probab=98.97 E-value=6.4e-09 Score=97.93 Aligned_cols=188 Identities=18% Similarity=0.131 Sum_probs=118.1
Q ss_pred CCCccEEEEEcCCCCcCcccCCcccCCCCccCCCCchHHHHHHhCCeEEEEcCCCCCCCCCCC-----------------
Q 004475 509 DGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGPSIPIIGEGDK----------------- 571 (751)
Q Consensus 509 ~~~~P~vv~~HGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~v~~~~~~~~~g~g~~----------------- 571 (751)
.+++|+|||.||-| + +...+..++..+|++||+|+++..+|....-..
T Consensus 115 ~~k~PvvvFSHGLg-----------g----sRt~YSa~c~~LAShG~VVaavEHRD~SA~~Ty~~~~~~~n~~lveq~~~ 179 (399)
T KOG3847|consen 115 NDKYPVVVFSHGLG-----------G----SRTLYSAYCTSLASHGFVVAAVEHRDRSACWTYVLKEKHENEPLVEQWIK 179 (399)
T ss_pred CCCccEEEEecccc-----------c----chhhHHHHhhhHhhCceEEEEeecccCcceeEEEecccccCCcccccceE
Confidence 45799999999964 1 222334678899999999999766655432100
Q ss_pred ----CCCch-------hHHHHHHHHHHHHHHHHHc---------------------CCCCCCcEEEEEeChHHHHHHHHH
Q 004475 572 ----LPNDR-------FVEQLVSSAEAAVEEVVRR---------------------GVADPSRIAVGGHSYGAFMTAHLL 619 (751)
Q Consensus 572 ----~~~~~-------~~~~~~~d~~~~v~~l~~~---------------------~~id~~~i~l~G~S~GG~~a~~~a 619 (751)
..+.. -...-++++..|++-|++. +.+|..+++++|||+||..++...
T Consensus 180 ir~v~~~ekef~irNeqv~~R~~Ec~~aL~il~~i~~g~~~~~~L~g~~~~~~~~K~nl~~s~~aViGHSFGgAT~i~~s 259 (399)
T KOG3847|consen 180 IRLVEANEKEFHIRNEQVGQRAQECQKALKILEQINDGGTPDNVLPGNNSDLEQLKGNLDTSQAAVIGHSFGGATSIASS 259 (399)
T ss_pred eeeeccCceeEEeeCHHHHHHHHHHHHHHHHHHHhhcCCCchhcccCccccHHHHhcchhhhhhhheeccccchhhhhhh
Confidence 00000 0112245666676666542 235678899999999999999888
Q ss_pred HhCCCceeEEEEccCCCCCCCCccCcccccccchhhHHHHHhcCcccccCCCCCCEEEEEcCCCCCCCCChHHHHHHHHH
Q 004475 620 AHAPHLFCCGIARSGSYNKTLTPFGFQTEFRTLWEATNVYIEMSPITHANKIKKPILIIHGEVDDKVGLFPMQAERFFDA 699 (751)
Q Consensus 620 ~~~p~~~~~~v~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~li~~G~~D~~vp~~~~~~~~~~~~ 699 (751)
+.+ ..|+|+|++.+.+-+... .+..+.+-|+|+|. ..|... -+.....+.
T Consensus 260 s~~-t~FrcaI~lD~WM~Pl~~------------------------~~~~~arqP~~fin-v~~fQ~----~en~~vmKk 309 (399)
T KOG3847|consen 260 SSH-TDFRCAIALDAWMFPLDQ------------------------LQYSQARQPTLFIN-VEDFQW----NENLLVMKK 309 (399)
T ss_pred ccc-cceeeeeeeeeeecccch------------------------hhhhhccCCeEEEE-cccccc----hhHHHHHHh
Confidence 877 679999988875321110 12345678999998 445543 233344444
Q ss_pred HHhCCCcEEEEEeCCCCCcCCc----------------------cccHHHHHHHHHHHHHHHhc
Q 004475 700 LKGHGALSRLVLLPFEHHVYAA----------------------RENVMHVIWETDRWLQKYCL 741 (751)
Q Consensus 700 l~~~~~~~~~~~~~~~~H~~~~----------------------~~~~~~~~~~~~~fl~~~l~ 741 (751)
+...+..-.+..+.|+-|.-.. .+..+...+..++||++++.
T Consensus 310 i~~~n~g~~~it~~GsVHqnfsDfpfv~p~~i~k~f~~kg~~dpy~~~~~~~r~slaFLq~h~d 373 (399)
T KOG3847|consen 310 IESQNEGNHVITLDGSVHQNFSDFPFVTPNWIGKVFKVKGETDPYEAMQIAIRASLAFLQKHLD 373 (399)
T ss_pred hhCCCccceEEEEccceecccccCccccHHHHHHHhccCCCCChHHHHHHHHHHHHHHHHhhhh
Confidence 4444444578888888884211 01123456778999999875
No 190
>PF09752 DUF2048: Uncharacterized conserved protein (DUF2048); InterPro: IPR019149 This family of proteins has no known function.
Probab=98.97 E-value=3.5e-08 Score=97.06 Aligned_cols=216 Identities=16% Similarity=0.066 Sum_probs=122.3
Q ss_pred EEEEEEcCCCCCCCCCCCccEEEEEcCCCCcCcccCCcccCCCCccCCCCchH-HHHHHhCCeEEEE--cCCCCCCCCC-
Q 004475 494 LTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTS-SLIFLARRFAVLA--GPSIPIIGEG- 569 (751)
Q Consensus 494 i~~~~~~P~~~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~G~~v~~--~~~~~~~g~g- 569 (751)
....+++|...+. ...|++|++.|.| +.+......+ +..|++.|++.+. .+|++.+---
T Consensus 77 a~~~~~~P~~~~~---~~rp~~IhLagTG--------------Dh~f~rR~~l~a~pLl~~gi~s~~le~Pyyg~RkP~~ 139 (348)
T PF09752_consen 77 ARFQLLLPKRWDS---PYRPVCIHLAGTG--------------DHGFWRRRRLMARPLLKEGIASLILENPYYGQRKPKD 139 (348)
T ss_pred eEEEEEECCcccc---CCCceEEEecCCC--------------ccchhhhhhhhhhHHHHcCcceEEEecccccccChhH
Confidence 4555666766422 2379999999964 2222222233 6677888998776 4443322100
Q ss_pred ---CCCCC--ch--hHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEccCCCCCCC--
Q 004475 570 ---DKLPN--DR--FVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGSYNKTL-- 640 (751)
Q Consensus 570 ---~~~~~--~~--~~~~~~~d~~~~v~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~~d~~~-- 640 (751)
..... .. .....+.++...+.|+.+++. .++++.|.||||+||.++++.+|..+..+-++++......
T Consensus 140 Q~~s~l~~VsDl~~~g~~~i~E~~~Ll~Wl~~~G~---~~~g~~G~SmGG~~A~laa~~~p~pv~~vp~ls~~sAs~vFt 216 (348)
T PF09752_consen 140 QRRSSLRNVSDLFVMGRATILESRALLHWLEREGY---GPLGLTGISMGGHMAALAASNWPRPVALVPCLSWSSASVVFT 216 (348)
T ss_pred hhcccccchhHHHHHHhHHHHHHHHHHHHHHhcCC---CceEEEEechhHhhHHhhhhcCCCceeEEEeecccCCCcchh
Confidence 00000 00 123557888999999999854 5899999999999999999999987776666665432110
Q ss_pred -------CccCccccc--------------ccc-----------hhhHHHH----HhcCcccccCCCC-----CCEEEEE
Q 004475 641 -------TPFGFQTEF--------------RTL-----------WEATNVY----IEMSPITHANKIK-----KPILIIH 679 (751)
Q Consensus 641 -------~~~~~~~~~--------------~~~-----------~~~~~~~----~~~~~~~~~~~~~-----~P~li~~ 679 (751)
..|...... ... +.+.+.. ....-..++.+.. -.+.++.
T Consensus 217 ~Gvls~~i~W~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ea~~~m~~~md~~T~l~nf~~P~dp~~ii~V~ 296 (348)
T PF09752_consen 217 EGVLSNSINWDALEKQFEDTVYEEEISDIPAQNKSLPLDSMEERRRDREALRFMRGVMDSFTHLTNFPVPVDPSAIIFVA 296 (348)
T ss_pred hhhhhcCCCHHHHHHHhcccchhhhhcccccCcccccchhhccccchHHHHHHHHHHHHhhccccccCCCCCCCcEEEEE
Confidence 001000000 000 0001110 0111122333333 3378899
Q ss_pred cCCCCCCCCChHHHHHHHHHHHhCCCcEEEEEeCCCCCcCCccccHHHHHHHHHHHH
Q 004475 680 GEVDDKVGLFPMQAERFFDALKGHGALSRLVLLPFEHHVYAARENVMHVIWETDRWL 736 (751)
Q Consensus 680 G~~D~~vp~~~~~~~~~~~~l~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~fl 736 (751)
+++|..|| ......+.+.. ..+++.++++ ||.....-....+.+.|.+=|
T Consensus 297 A~~DaYVP--r~~v~~Lq~~W----PGsEvR~l~g-GHVsA~L~~q~~fR~AI~Daf 346 (348)
T PF09752_consen 297 AKNDAYVP--RHGVLSLQEIW----PGSEVRYLPG-GHVSAYLLHQEAFRQAIYDAF 346 (348)
T ss_pred ecCceEec--hhhcchHHHhC----CCCeEEEecC-CcEEEeeechHHHHHHHHHHh
Confidence 99999998 66655554444 4567888887 897544444445555555433
No 191
>PF05728 UPF0227: Uncharacterised protein family (UPF0227); InterPro: IPR008886 Despite being classed as uncharacterised proteins, the members of this family are almost certainly enzymes in that they contain a domain distantly related to IPR000073 from INTERPRO. One of the members of this family YqiA has been shown to be a esterase []. Other members, which include the Escherichia coli (strain K12) YcfP protein are uncharacterised.
Probab=98.96 E-value=4.4e-08 Score=89.96 Aligned_cols=121 Identities=11% Similarity=0.071 Sum_probs=72.2
Q ss_pred CcEEEEEeChHHHHHHHHHHhCCCceeEEEEccCCCCCCCCc---cCc---ccccccchhhHHHHHhcCccccc-CCCCC
Q 004475 601 SRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGSYNKTLTP---FGF---QTEFRTLWEATNVYIEMSPITHA-NKIKK 673 (751)
Q Consensus 601 ~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~~d~~~~~---~~~---~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 673 (751)
..++|+|.|+||+.|.+++.+++ +++ |+++|.+.....- .+. .......+-....+.+...+... .....
T Consensus 59 ~~~~liGSSlGG~~A~~La~~~~--~~a-vLiNPav~p~~~l~~~iG~~~~~~~~e~~~~~~~~~~~l~~l~~~~~~~~~ 135 (187)
T PF05728_consen 59 ENVVLIGSSLGGFYATYLAERYG--LPA-VLINPAVRPYELLQDYIGEQTNPYTGESYELTEEHIEELKALEVPYPTNPE 135 (187)
T ss_pred CCeEEEEEChHHHHHHHHHHHhC--CCE-EEEcCCCCHHHHHHHhhCccccCCCCccceechHhhhhcceEeccccCCCc
Confidence 45999999999999999999884 344 7778875522110 000 00000001111122222221111 12246
Q ss_pred CEEEEEcCCCCCCCCChHHHHHHHHHHHhCCCcEEEEEeCCCCCcCCccccHHHHHHHHHHHH
Q 004475 674 PILIIHGEVDDKVGLFPMQAERFFDALKGHGALSRLVLLPFEHHVYAARENVMHVIWETDRWL 736 (751)
Q Consensus 674 P~li~~G~~D~~vp~~~~~~~~~~~~l~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~fl 736 (751)
++++++++.|.+++ +..+...+ .. +...+.+|++|.+.. ..+.+..+++|+
T Consensus 136 ~~lvll~~~DEvLd--~~~a~~~~---~~----~~~~i~~ggdH~f~~---f~~~l~~i~~f~ 186 (187)
T PF05728_consen 136 RYLVLLQTGDEVLD--YREAVAKY---RG----CAQIIEEGGDHSFQD---FEEYLPQIIAFL 186 (187)
T ss_pred cEEEEEecCCcccC--HHHHHHHh---cC----ceEEEEeCCCCCCcc---HHHHHHHHHHhh
Confidence 89999999999988 65554444 22 234566888999764 667888888887
No 192
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=98.96 E-value=4e-07 Score=87.46 Aligned_cols=264 Identities=11% Similarity=0.073 Sum_probs=150.3
Q ss_pred eEEeecCCCCCCCCcccccCCCCcc-cccceeecCCCCeEEEEEeecccccccCCceeEEEEEcCCCCeeeccCCCCccc
Q 004475 7 IGIHRLLPDDSLGPEKEVHGYPDGA-KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICL 85 (751)
Q Consensus 7 ~~~~~~~~~~~~g~~~~l~~~~~~~-~~~~p~~SPDG~~iaf~~~~~~~~~~~~~~~~l~i~~~~~g~~~~lt~~~~~~~ 85 (751)
.++|+.++ |+.. -.+++.. .+....||-||.+||.- +..+.|.|....+|..+.-...+..
T Consensus 88 AflW~~~~----ge~~--~eltgHKDSVt~~~FshdgtlLATG----------dmsG~v~v~~~stg~~~~~~~~e~~-- 149 (399)
T KOG0296|consen 88 AFLWDIST----GEFA--GELTGHKDSVTCCSFSHDGTLLATG----------DMSGKVLVFKVSTGGEQWKLDQEVE-- 149 (399)
T ss_pred EEEEEccC----Ccce--eEecCCCCceEEEEEccCceEEEec----------CCCccEEEEEcccCceEEEeecccC--
Confidence 57899988 7733 2233433 68999999999999983 4446666777767765554432221
Q ss_pred cceeeeeEEecCCcEEEEeecCCCCCCCCCCCCCCCCceeeccccccccchhhhhccCCccchhhhhhheeeEEEEEcC-
Q 004475 86 NAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL- 164 (751)
Q Consensus 86 ~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~- 164 (751)
.+.++.|.|-+..|++.+.+ ..+|.+.+
T Consensus 150 --dieWl~WHp~a~illAG~~D-------------------------------------------------GsvWmw~ip 178 (399)
T KOG0296|consen 150 --DIEWLKWHPRAHILLAGSTD-------------------------------------------------GSVWMWQIP 178 (399)
T ss_pred --ceEEEEecccccEEEeecCC-------------------------------------------------CcEEEEECC
Confidence 37799999999888887543 57888888
Q ss_pred CC-CceecCCC-ceEEeeeeCCCCceEEEEEecCCcccccccCCCceeEEEEeCCCceee-eeccCCCCCCCCCccCCcc
Q 004475 165 DG-TAKDFGTP-AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVR-ELCDLPPAEDIPVCYNSVR 241 (751)
Q Consensus 165 ~G-~~~~lt~~-~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~-~l~~~~~~~~~~~~~~~~~ 241 (751)
++ ..+.+.-+ .....-.|.||||+|+....+ ..|.+|++.++++. .++........+..+...
T Consensus 179 ~~~~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~d-------------gti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~- 244 (399)
T KOG0296|consen 179 SQALCKVMSGHNSPCTCGEFIPDGKRILTGYDD-------------GTIIVWNPKTGQPLHKITQAEGLELPCISLNLA- 244 (399)
T ss_pred CcceeeEecCCCCCcccccccCCCceEEEEecC-------------ceEEEEecCCCceeEEecccccCcCCccccccc-
Confidence 54 33444333 556677899999999876443 46889999887543 333211111111111000
Q ss_pred CCCceeeeecCCC--------ceEEEEEec---------cCCCCc-------------cccCcccceeeccCCCCCCCCc
Q 004475 242 EGMRSISWRADKP--------STLYWVEAQ---------DRGDAN-------------VEVSPRDIIYTQPAEPAEGEKP 291 (751)
Q Consensus 242 ~~~~~~~~spdG~--------~~i~~~~~~---------~~~~~~-------------~~~~~~~~l~~~~~~~~~~~~~ 291 (751)
+-..++=+.+|. .-++.+... +..... .--...+.|.++|+. ....
T Consensus 245 -~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a---~~~~ 320 (399)
T KOG0296|consen 245 -GSTLTKGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEELDESVESIPSSSKLPLAACGSVDGTIAIYDLA---ASTL 320 (399)
T ss_pred -cceeEeccCCccEEEEccccceEEEecCCCCccccccchhhhhhhhhcccccccchhhcccccceEEEEecc---cchh
Confidence 000111122221 111221110 000000 001123578888875 4566
Q ss_pred eEeEeeceeEE-EEEecCCceEEEeeeecccceeEEEecCCCCCCcceeeeecccccccCCCCCCCeeeCCCCCEEEEee
Q 004475 292 EILHKLDLRFS-VSWCDDSLALVNETWYKTSQTRTWLVCPGSKDVAPRVLFDRVFENVYSDPGSPMMTRTSTGTNVIAKI 370 (751)
Q Consensus 292 ~~l~~~~~~~~-~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~spDG~~l~~~~ 370 (751)
+.+...+..+. ..|-+ ..+|+... .+..|+..|..++ ..+....+....+.. ++.+||++.|+..+
T Consensus 321 R~~c~he~~V~~l~w~~-t~~l~t~c----~~g~v~~wDaRtG--~l~~~y~GH~~~Il~------f~ls~~~~~vvT~s 387 (399)
T KOG0296|consen 321 RHICEHEDGVTKLKWLN-TDYLLTAC----ANGKVRQWDARTG--QLKFTYTGHQMGILD------FALSPQKRLVVTVS 387 (399)
T ss_pred heeccCCCceEEEEEcC-cchheeec----cCceEEeeecccc--ceEEEEecCchheeE------EEEcCCCcEEEEec
Confidence 66666666666 88988 55555443 2346777888775 223333333332322 77899999888777
No 193
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=98.95 E-value=1.7e-07 Score=88.30 Aligned_cols=278 Identities=13% Similarity=0.165 Sum_probs=151.2
Q ss_pred cccceeecCCCCeEEEEEeecccccccCCceeEEEEEcCC--CCeeeccC-CCCccccceeeeeEEecCCcEEEEeecCC
Q 004475 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAET--GEAKPLFE-SPDICLNAVFGSFVWVNNSTLLIFTIPSS 108 (751)
Q Consensus 32 ~~~~p~~SPDG~~iaf~~~~~~~~~~~~~~~~l~i~~~~~--g~~~~lt~-~~~~~~~~~~~~~~wspDg~~l~~~~~~~ 108 (751)
.++...||.||++||.++ +...|.+++++. .++.+... .-... + ...++|+||=+.+++....+
T Consensus 88 ~vt~~~FsSdGK~lat~~----------~Dr~Ir~w~~~DF~~~eHr~~R~nve~d-h--pT~V~FapDc~s~vv~~~~g 154 (420)
T KOG2096|consen 88 EVTDVAFSSDGKKLATIS----------GDRSIRLWDVRDFENKEHRCIRQNVEYD-H--PTRVVFAPDCKSVVVSVKRG 154 (420)
T ss_pred ceeeeEEcCCCceeEEEe----------CCceEEEEecchhhhhhhhHhhccccCC-C--ceEEEECCCcceEEEEEccC
Confidence 688999999999999985 334555556554 22222111 11111 1 24679999998888764321
Q ss_pred CCCCCCCCCCCCCCceeeccccccccchhhhhccCCccchhhhhhheeeEEEEEcC----CCC----ceecCC------C
Q 004475 109 RRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL----DGT----AKDFGT------P 174 (751)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~----~G~----~~~lt~------~ 174 (751)
..|+++.+ +|. ...+.+ +
T Consensus 155 ------------------------------------------------~~l~vyk~~K~~dG~~~~~~v~~D~~~f~~kh 186 (420)
T KOG2096|consen 155 ------------------------------------------------NKLCVYKLVKKTDGSGSHHFVHIDNLEFERKH 186 (420)
T ss_pred ------------------------------------------------CEEEEEEeeecccCCCCcccccccccccchhc
Confidence 23333333 231 111110 1
Q ss_pred -ceEEeeeeCCCCceEEEEEecCCcccccccCCCceeEEEEeCCCceeeeeccCCCCCCCCCccCCccCCCceeeeecCC
Q 004475 175 -AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADK 253 (751)
Q Consensus 175 -~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~spdG 253 (751)
..+.++-..-.+++|+-.+. ..+|.+|++.|..+..+. ++.......+.||||
T Consensus 187 ~v~~i~iGiA~~~k~imsas~-------------dt~i~lw~lkGq~L~~id-------------tnq~~n~~aavSP~G 240 (420)
T KOG2096|consen 187 QVDIINIGIAGNAKYIMSASL-------------DTKICLWDLKGQLLQSID-------------TNQSSNYDAAVSPDG 240 (420)
T ss_pred ccceEEEeecCCceEEEEecC-------------CCcEEEEecCCceeeeec-------------cccccccceeeCCCC
Confidence 23445666667777766543 347899999865444432 222223456999999
Q ss_pred CceEEEEEeccCCCCccccCcccceeeccCC-CCCC--CCc---eEeEeeceeEE-EEEecCCceEEEeeeecccceeEE
Q 004475 254 PSTLYWVEAQDRGDANVEVSPRDIIYTQPAE-PAEG--EKP---EILHKLDLRFS-VSWCDDSLALVNETWYKTSQTRTW 326 (751)
Q Consensus 254 ~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~--~~~---~~l~~~~~~~~-~~~spdg~~l~~~~~~~~~~~~l~ 326 (751)
+. |+.+.-. .++.++..- ..+| ++. ..|......+. ++||+++++++..+ ..+..+||
T Consensus 241 RF-ia~~gFT------------pDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtvS--kDG~wriw 305 (420)
T KOG2096|consen 241 RF-IAVSGFT------------PDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVS--KDGKWRIW 305 (420)
T ss_pred cE-EEEecCC------------CCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcceeEEEe--cCCcEEEe
Confidence 98 5553311 122222210 0112 122 22334444555 89999999998777 34567888
Q ss_pred EecCCCC-CCcceeeeecccccccCCCCCC-CeeeCCCCCEEEEeeeecCCcceEEEEccCCCCCCCCCceeEEEecCCC
Q 004475 327 LVCPGSK-DVAPRVLFDRVFENVYSDPGSP-MMTRTSTGTNVIAKIKKENDEQIYILLNGRGFTPEGNIPFLDLFDINTG 404 (751)
Q Consensus 327 ~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~-~~~~spDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g 404 (751)
-.|..-. ...++.|-.++...... .+.| -++.||.|+.|+.... ..|.++..++|
T Consensus 306 dtdVrY~~~qDpk~Lk~g~~pl~aa-g~~p~RL~lsP~g~~lA~s~g----------------------s~l~~~~se~g 362 (420)
T KOG2096|consen 306 DTDVRYEAGQDPKILKEGSAPLHAA-GSEPVRLELSPSGDSLAVSFG----------------------SDLKVFASEDG 362 (420)
T ss_pred eccceEecCCCchHhhcCCcchhhc-CCCceEEEeCCCCcEEEeecC----------------------CceEEEEcccC
Confidence 8776532 12344443332221111 1122 2778999998887662 15777777776
Q ss_pred ceeEEeeccchhhhhceeeeecCCcceeeccCCCEEEEEE
Q 004475 405 SKERIWESNREKYFETAVALVFGQGEEDINLNQLKILTSK 444 (751)
Q Consensus 405 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~ 444 (751)
+...-...-. ...-..++|++||+.++--.
T Consensus 363 ~~~~~~e~~h----------~~~Is~is~~~~g~~~atcG 392 (420)
T KOG2096|consen 363 KDYPELEDIH----------STTISSISYSSDGKYIATCG 392 (420)
T ss_pred ccchhHHHhh----------cCceeeEEecCCCcEEeeec
Confidence 5432221110 01112368999999887653
No 194
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=98.95 E-value=5.7e-08 Score=100.51 Aligned_cols=289 Identities=13% Similarity=0.077 Sum_probs=141.2
Q ss_pred cceeEEeecCCCCCCCCcccccCCCCcccccceeecCCCCeEEEEEeecccccccCCceeEEEEEcCCCCeeeccCCCCc
Q 004475 4 FTGIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDI 83 (751)
Q Consensus 4 ~~~~~~~~~~~~~~~g~~~~l~~~~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~~~~~l~i~~~~~g~~~~lt~~~~~ 83 (751)
...|.++|+.+ ++...- +..+......++||||++|+.... ..+++-++|.++.+..+.......
T Consensus 57 dg~vsviD~~~----~~~v~~--i~~G~~~~~i~~s~DG~~~~v~n~---------~~~~v~v~D~~tle~v~~I~~~~~ 121 (369)
T PF02239_consen 57 DGTVSVIDLAT----GKVVAT--IKVGGNPRGIAVSPDGKYVYVANY---------EPGTVSVIDAETLEPVKTIPTGGM 121 (369)
T ss_dssp TSEEEEEETTS----SSEEEE--EE-SSEEEEEEE--TTTEEEEEEE---------ETTEEEEEETTT--EEEEEE--EE
T ss_pred CCeEEEEECCc----ccEEEE--EecCCCcceEEEcCCCCEEEEEec---------CCCceeEeccccccceeecccccc
Confidence 35788899987 664432 344556788999999999976542 337899999888775443211110
Q ss_pred c---ccceeeeeEEecCCcEEEEeecCCCCCCCCCCCCCCCCceeeccccccccchhhhhccCCccchhhhhhheeeEEE
Q 004475 84 C---LNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLV 160 (751)
Q Consensus 84 ~---~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 160 (751)
. ..+.+..+.-||+....++...+ ..++|
T Consensus 122 ~~~~~~~Rv~aIv~s~~~~~fVv~lkd------------------------------------------------~~~I~ 153 (369)
T PF02239_consen 122 PVDGPESRVAAIVASPGRPEFVVNLKD------------------------------------------------TGEIW 153 (369)
T ss_dssp -TTTS---EEEEEE-SSSSEEEEEETT------------------------------------------------TTEEE
T ss_pred cccccCCCceeEEecCCCCEEEEEEcc------------------------------------------------CCeEE
Confidence 0 01123345557777755554321 15899
Q ss_pred EEcC-CCC---ceecCCCceEEeeeeCCCCceEEEEEecCCcccccccCCCceeEEEEeCCCceeeeeccCCCCCCCCCc
Q 004475 161 LGSL-DGT---AKDFGTPAVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVC 236 (751)
Q Consensus 161 ~~~~-~G~---~~~lt~~~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~ 236 (751)
++|. +.+ .+.+.......+..|+|||++++..... ...+-++|..+++...+... +..-.+..
T Consensus 154 vVdy~d~~~~~~~~i~~g~~~~D~~~dpdgry~~va~~~------------sn~i~viD~~~~k~v~~i~~-g~~p~~~~ 220 (369)
T PF02239_consen 154 VVDYSDPKNLKVTTIKVGRFPHDGGFDPDGRYFLVAANG------------SNKIAVIDTKTGKLVALIDT-GKKPHPGP 220 (369)
T ss_dssp EEETTTSSCEEEEEEE--TTEEEEEE-TTSSEEEEEEGG------------GTEEEEEETTTTEEEEEEE--SSSBEETT
T ss_pred EEEeccccccceeeecccccccccccCcccceeeecccc------------cceeEEEeeccceEEEEeec-cccccccc
Confidence 9998 332 2233223456688999999999886544 23577888877655443221 00000000
Q ss_pred cCCccCCCceeeeecCCCc--eEEEEEeccCCCCccccCcccceeeccCCCCCCCCceEeEeeceeEEEEEecCCceEEE
Q 004475 237 YNSVREGMRSISWRADKPS--TLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFSVSWCDDSLALVN 314 (751)
Q Consensus 237 ~~~~~~~~~~~~~spdG~~--~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~spdg~~l~~ 314 (751)
...-..-..+..|.-.+.. .+..+. ...+.+++... -...+.+....+.+.+..+||+++|+.
T Consensus 221 ~~~~php~~g~vw~~~~~~~~~~~~ig-------------~~~v~v~d~~~--wkvv~~I~~~G~glFi~thP~s~~vwv 285 (369)
T PF02239_consen 221 GANFPHPGFGPVWATSGLGYFAIPLIG-------------TDPVSVHDDYA--WKVVKTIPTQGGGLFIKTHPDSRYVWV 285 (369)
T ss_dssp EEEEEETTTEEEEEEEBSSSSEEEEEE---------------TTT-STTTB--TSEEEEEE-SSSS--EE--TT-SEEEE
T ss_pred cccccCCCcceEEeeccccceeccccc-------------CCccccchhhc--CeEEEEEECCCCcceeecCCCCccEEe
Confidence 0000000112344433332 111111 11222233220 122333333222322677999999988
Q ss_pred eeeecccceeEEEecCCCCCCcceeeeecccccccCCCCCCCeeeCCCCCEEEEeeeecCCcceEEEEccCCCCCCCCCc
Q 004475 315 ETWYKTSQTRTWLVCPGSKDVAPRVLFDRVFENVYSDPGSPMMTRTSTGTNVIAKIKKENDEQIYILLNGRGFTPEGNIP 394 (751)
Q Consensus 315 ~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~spDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 394 (751)
..........|.++|.++. .....+.......... +.|++||+.+++..++. +.
T Consensus 286 d~~~~~~~~~v~viD~~tl-~~~~~i~~~~~~~~~h------~ef~~dG~~v~vS~~~~-------------------~~ 339 (369)
T PF02239_consen 286 DTFLNPDADTVQVIDKKTL-KVVKTITPGPGKRVVH------MEFNPDGKEVWVSVWDG-------------------NG 339 (369)
T ss_dssp E-TT-SSHT-EEEEECCGT-EEEE-HHHHHT--EEE------EEE-TTSSEEEEEEE---------------------TT
T ss_pred eccCCCCCceEEEEECcCc-ceeEEEeccCCCcEec------cEECCCCCEEEEEEecC-------------------CC
Confidence 6322233568999999884 1112222221100111 78999999998888542 12
Q ss_pred eeEEEecCCCceeEE
Q 004475 395 FLDLFDINTGSKERI 409 (751)
Q Consensus 395 ~l~~~d~~~g~~~~l 409 (751)
.|.++|.+|.+....
T Consensus 340 ~i~v~D~~Tl~~~~~ 354 (369)
T PF02239_consen 340 AIVVYDAKTLKEKKR 354 (369)
T ss_dssp EEEEEETTTTEEEEE
T ss_pred EEEEEECCCcEEEEE
Confidence 788999998876444
No 195
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=98.93 E-value=3.1e-06 Score=80.24 Aligned_cols=231 Identities=12% Similarity=0.058 Sum_probs=132.9
Q ss_pred EEEEEcC-CC-CceecCCC-ceEEeeeeCCCCceEEEEEecCCcccccccCCCceeEEEEeCCCceeeeeccCCCCCCCC
Q 004475 158 QLVLGSL-DG-TAKDFGTP-AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIP 234 (751)
Q Consensus 158 ~l~~~~~-~G-~~~~lt~~-~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~ 234 (751)
.|.++|. +| +.+.+... -++.-+.|......+++.+... +..|...++.+.+..+.
T Consensus 37 sl~LYd~~~g~~~~ti~skkyG~~~~~Fth~~~~~i~sStk~-----------d~tIryLsl~dNkylRY---------- 95 (311)
T KOG1446|consen 37 SLRLYDSLSGKQVKTINSKKYGVDLACFTHHSNTVIHSSTKE-----------DDTIRYLSLHDNKYLRY---------- 95 (311)
T ss_pred eEEEEEcCCCceeeEeecccccccEEEEecCCceEEEccCCC-----------CCceEEEEeecCceEEE----------
Confidence 6777888 77 55566555 5677788888888887765521 34566777765544332
Q ss_pred CccCCccCCCceeeeecCCCceEEEEEeccCCCCccccCcccceeeccCCCCCCCCceEeEeeceeEEEEEecCCceEEE
Q 004475 235 VCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFSVSWCDDSLALVN 314 (751)
Q Consensus 235 ~~~~~~~~~~~~~~~spdG~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~spdg~~l~~ 314 (751)
|......+..+..+|=+.. .+-. .....|++||+. .....-+....+.-.++|.|+|-.+|.
T Consensus 96 --F~GH~~~V~sL~~sP~~d~-FlS~------------S~D~tvrLWDlR---~~~cqg~l~~~~~pi~AfDp~GLifA~ 157 (311)
T KOG1446|consen 96 --FPGHKKRVNSLSVSPKDDT-FLSS------------SLDKTVRLWDLR---VKKCQGLLNLSGRPIAAFDPEGLIFAL 157 (311)
T ss_pred --cCCCCceEEEEEecCCCCe-EEec------------ccCCeEEeeEec---CCCCceEEecCCCcceeECCCCcEEEE
Confidence 2223333456777777754 2221 133578888884 222222222222111689999987776
Q ss_pred eeeecccceeEEEecCCCCCCcceeeeecc--cccccCCCCCCCeeeCCCCCEEEEeeeecCCcceEEEEccCCCCCCCC
Q 004475 315 ETWYKTSQTRTWLVCPGSKDVAPRVLFDRV--FENVYSDPGSPMMTRTSTGTNVIAKIKKENDEQIYILLNGRGFTPEGN 392 (751)
Q Consensus 315 ~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~--~~~~~~~~~~~~~~~spDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 392 (751)
+... . .|.++|+..-+..|.+.+... ...-|. .+.||||||.|+....
T Consensus 158 ~~~~--~--~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~-----~l~FS~dGK~iLlsT~--------------------- 207 (311)
T KOG1446|consen 158 ANGS--E--LIKLYDLRSFDKGPFTTFSITDNDEAEWT-----DLEFSPDGKSILLSTN--------------------- 207 (311)
T ss_pred ecCC--C--eEEEEEecccCCCCceeEccCCCCcccee-----eeEEcCCCCEEEEEeC---------------------
Confidence 5522 1 455555543223333332211 111111 1889999999998883
Q ss_pred CceeEEEecCCCceeEEeeccchhhhhceeeeecCCcceeeccCCCEEEEEEecCCCCCeEEEEEcCCCceeEeecC
Q 004475 393 IPFLDLFDINTGSKERIWESNREKYFETAVALVFGQGEEDINLNQLKILTSKESKTEITQYHILSWPLKKSSQITNF 469 (751)
Q Consensus 393 ~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~l~~~~~~~g~~~~lt~~ 469 (751)
...++++|.=+|....-+..... -....-.+.|+|||+.++... . -+.|..+++++|+..-....
T Consensus 208 ~s~~~~lDAf~G~~~~tfs~~~~--------~~~~~~~a~ftPds~Fvl~gs-~---dg~i~vw~~~tg~~v~~~~~ 272 (311)
T KOG1446|consen 208 ASFIYLLDAFDGTVKSTFSGYPN--------AGNLPLSATFTPDSKFVLSGS-D---DGTIHVWNLETGKKVAVLRG 272 (311)
T ss_pred CCcEEEEEccCCcEeeeEeeccC--------CCCcceeEEECCCCcEEEEec-C---CCcEEEEEcCCCcEeeEecC
Confidence 33788889888876544443221 001112368999999777654 2 35688899998876654443
No 196
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=98.92 E-value=3.8e-08 Score=103.72 Aligned_cols=145 Identities=11% Similarity=0.074 Sum_probs=92.3
Q ss_pred ceEEeeeeCCCCceEEEEEecCCcccccccCCCceeEEEEeCCCceeeeeccCCCCCCCCCccCCccCCCceeeeecCCC
Q 004475 175 AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKP 254 (751)
Q Consensus 175 ~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~spdG~ 254 (751)
..++.+.|+|-|-+++-.+.++ ...+|..+...+.++..... ..++.+.|+|+..
T Consensus 494 ~PVwdV~F~P~GyYFatas~D~-------------tArLWs~d~~~PlRifaghl------------sDV~cv~FHPNs~ 548 (707)
T KOG0263|consen 494 APVWDVQFAPRGYYFATASHDQ-------------TARLWSTDHNKPLRIFAGHL------------SDVDCVSFHPNSN 548 (707)
T ss_pred cceeeEEecCCceEEEecCCCc-------------eeeeeecccCCchhhhcccc------------cccceEEECCccc
Confidence 6677889999998887765443 23455555444544433322 2355789999998
Q ss_pred ceEEEEEeccCCCCccccCcccceeeccCCCCCCCCceEeEeeceeEE-EEEecCCceEEEeeeecccceeEEEecCCCC
Q 004475 255 STLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFS-VSWCDDSLALVNETWYKTSQTRTWLVCPGSK 333 (751)
Q Consensus 255 ~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~-~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~ 333 (751)
+ ++--+ ....+.+||+. +|..++..+.+-+.+. +.|||+|++|+.+.. ...|-+.|+.++
T Consensus 549 Y-~aTGS------------sD~tVRlWDv~--~G~~VRiF~GH~~~V~al~~Sp~Gr~LaSg~e----d~~I~iWDl~~~ 609 (707)
T KOG0263|consen 549 Y-VATGS------------SDRTVRLWDVS--TGNSVRIFTGHKGPVTALAFSPCGRYLASGDE----DGLIKIWDLANG 609 (707)
T ss_pred c-cccCC------------CCceEEEEEcC--CCcEEEEecCCCCceEEEEEcCCCceEeeccc----CCcEEEEEcCCC
Confidence 7 33311 12356666664 2556666667777788 999999999987662 245666777774
Q ss_pred CCcceeeeecccccccCCCCCCCeeeCCCCCEEEEeee
Q 004475 334 DVAPRVLFDRVFENVYSDPGSPMMTRTSTGTNVIAKIK 371 (751)
Q Consensus 334 ~~~~~~l~~~~~~~~~~~~~~~~~~~spDG~~l~~~~~ 371 (751)
....++..+ ....++ ++||.||..|+..+.
T Consensus 610 -~~v~~l~~H-t~ti~S------lsFS~dg~vLasgg~ 639 (707)
T KOG0263|consen 610 -SLVKQLKGH-TGTIYS------LSFSRDGNVLASGGA 639 (707)
T ss_pred -cchhhhhcc-cCceeE------EEEecCCCEEEecCC
Confidence 222233333 333344 889999999888773
No 197
>PTZ00420 coronin; Provisional
Probab=98.91 E-value=1.2e-06 Score=94.62 Aligned_cols=118 Identities=13% Similarity=0.107 Sum_probs=70.0
Q ss_pred ceEEeeeeCCCCceEEEEEecCCcccccccCCCceeEEEEeCCCceeeeeccCCCCCCCCCccCCccCCCceeeeecCCC
Q 004475 175 AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKP 254 (751)
Q Consensus 175 ~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~spdG~ 254 (751)
..+..++|+|++..+++++.. ...+.+||+.+++........ ..+..++|+|||+
T Consensus 126 ~~V~sVaf~P~g~~iLaSgS~------------DgtIrIWDl~tg~~~~~i~~~-------------~~V~SlswspdG~ 180 (568)
T PTZ00420 126 KKISIIDWNPMNYYIMCSSGF------------DSFVNIWDIENEKRAFQINMP-------------KKLSSLKWNIKGN 180 (568)
T ss_pred CcEEEEEECCCCCeEEEEEeC------------CCeEEEEECCCCcEEEEEecC-------------CcEEEEEECCCCC
Confidence 668899999999987765432 346889999876533211111 2356899999999
Q ss_pred ceEEEEEeccCCCCccccCcccceeeccCCCCCCCCceEeEeeceeE-----E-EEEecCCceEEEeeeecccceeEEEe
Q 004475 255 STLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRF-----S-VSWCDDSLALVNETWYKTSQTRTWLV 328 (751)
Q Consensus 255 ~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~-----~-~~~spdg~~l~~~~~~~~~~~~l~~~ 328 (751)
. |+.+. ..+.|.++|+.. +.....+..+.+.. . ..|++|+++|+.+.......++|.+.
T Consensus 181 l-Lat~s------------~D~~IrIwD~Rs--g~~i~tl~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLW 245 (568)
T PTZ00420 181 L-LSGTC------------VGKHMHIIDPRK--QEIASSFHIHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLW 245 (568)
T ss_pred E-EEEEe------------cCCEEEEEECCC--CcEEEEEecccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEE
Confidence 7 54432 224788888741 22223333333321 1 23568999877655332222456666
Q ss_pred cCCC
Q 004475 329 CPGS 332 (751)
Q Consensus 329 ~~~~ 332 (751)
|+..
T Consensus 246 Dlr~ 249 (568)
T PTZ00420 246 DLKN 249 (568)
T ss_pred ECCC
Confidence 6664
No 198
>KOG2382 consensus Predicted alpha/beta hydrolase [General function prediction only]
Probab=98.90 E-value=4.2e-08 Score=95.07 Aligned_cols=202 Identities=14% Similarity=0.094 Sum_probs=120.5
Q ss_pred CccEEEEEcCCCCcCcccCCcccCCCCccCCCCchHHHHHHh-CCeEEEEcCCCCCCCCCCCCCC-chhHHHHHHHHHHH
Q 004475 511 PLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLA-RRFAVLAGPSIPIIGEGDKLPN-DRFVEQLVSSAEAA 588 (751)
Q Consensus 511 ~~P~vv~~HGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~G~~v~~~~~~~~~g~g~~~~~-~~~~~~~~~d~~~~ 588 (751)
+.|.++++||- .++...|. .....|+. -|-.|+++ +.+-+|.+..- ......+.+|+...
T Consensus 51 ~~Pp~i~lHGl-----------~GS~~Nw~----sv~k~Ls~~l~~~v~~v---d~RnHG~Sp~~~~h~~~~ma~dv~~F 112 (315)
T KOG2382|consen 51 RAPPAIILHGL-----------LGSKENWR----SVAKNLSRKLGRDVYAV---DVRNHGSSPKITVHNYEAMAEDVKLF 112 (315)
T ss_pred CCCceEEeccc-----------ccCCCCHH----HHHHHhcccccCceEEE---ecccCCCCccccccCHHHHHHHHHHH
Confidence 47899999993 33322222 23334443 35566663 34445554321 22256778888888
Q ss_pred HHHHHHcCCCCCCcEEEEEeChHH-HHHHHHHHhCCCceeEEEEcc--C-CCCCCCC------------ccC--------
Q 004475 589 VEEVVRRGVADPSRIAVGGHSYGA-FMTAHLLAHAPHLFCCGIARS--G-SYNKTLT------------PFG-------- 644 (751)
Q Consensus 589 v~~l~~~~~id~~~i~l~G~S~GG-~~a~~~a~~~p~~~~~~v~~~--~-~~d~~~~------------~~~-------- 644 (751)
++....... ..++.++|||||| .+++..+...|+.+..+|... | .+..... +..
T Consensus 113 i~~v~~~~~--~~~~~l~GHsmGG~~~~m~~t~~~p~~~~rliv~D~sP~~~~~~~~e~~e~i~~m~~~d~~~~~~~~rk 190 (315)
T KOG2382|consen 113 IDGVGGSTR--LDPVVLLGHSMGGVKVAMAETLKKPDLIERLIVEDISPGGVGRSYGEYRELIKAMIQLDLSIGVSRGRK 190 (315)
T ss_pred HHHcccccc--cCCceecccCcchHHHHHHHHHhcCcccceeEEEecCCccCCcccchHHHHHHHHHhccccccccccHH
Confidence 888865433 3579999999999 777777788888766555432 3 1110000 000
Q ss_pred ----------------------cc---cccccchhh-----HHHHH---hcCccccc--CCCCCCEEEEEcCCCCCCCCC
Q 004475 645 ----------------------FQ---TEFRTLWEA-----TNVYI---EMSPITHA--NKIKKPILIIHGEVDDKVGLF 689 (751)
Q Consensus 645 ----------------------~~---~~~~~~~~~-----~~~~~---~~~~~~~~--~~~~~P~li~~G~~D~~vp~~ 689 (751)
+. ......|.- .+.+. ..+.-..+ .....|+|+++|.++..+|
T Consensus 191 e~~~~l~~~~~d~~~~~fi~~nl~~~~~~~s~~w~~nl~~i~~~~~~~~~~s~~~~l~~~~~~~pvlfi~g~~S~fv~-- 268 (315)
T KOG2382|consen 191 EALKSLIEVGFDNLVRQFILTNLKKSPSDGSFLWRVNLDSIASLLDEYEILSYWADLEDGPYTGPVLFIKGLQSKFVP-- 268 (315)
T ss_pred HHHHHHHHHhcchHHHHHHHHhcCcCCCCCceEEEeCHHHHHHHHHHHHhhcccccccccccccceeEEecCCCCCcC--
Confidence 00 000011110 11111 11221222 4457999999999999998
Q ss_pred hHHHHHHHHHHHhCCCcEEEEEeCCCCCcCCccccHHHHHHHHHHHHHHH
Q 004475 690 PMQAERFFDALKGHGALSRLVLLPFEHHVYAARENVMHVIWETDRWLQKY 739 (751)
Q Consensus 690 ~~~~~~~~~~l~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~fl~~~ 739 (751)
..+-.++.+.+ ..+++++++++||+.+ .++++.+++.+.+|+..+
T Consensus 269 ~~~~~~~~~~f----p~~e~~~ld~aGHwVh-~E~P~~~~~~i~~Fl~~~ 313 (315)
T KOG2382|consen 269 DEHYPRMEKIF----PNVEVHELDEAGHWVH-LEKPEEFIESISEFLEEP 313 (315)
T ss_pred hhHHHHHHHhc----cchheeecccCCceee-cCCHHHHHHHHHHHhccc
Confidence 56544444444 3479999999999997 788999999999988764
No 199
>PLN00181 protein SPA1-RELATED; Provisional
Probab=98.87 E-value=3.5e-06 Score=98.04 Aligned_cols=229 Identities=11% Similarity=0.128 Sum_probs=125.8
Q ss_pred cccceeecCCCCeEEEEEeecccccccCCceeEEEEEcCCCC--ee----eccCCCCccccceeeeeEEecC-CcEEEEe
Q 004475 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGE--AK----PLFESPDICLNAVFGSFVWVNN-STLLIFT 104 (751)
Q Consensus 32 ~~~~p~~SPDG~~iaf~~~~~~~~~~~~~~~~l~i~~~~~g~--~~----~lt~~~~~~~~~~~~~~~wspD-g~~l~~~ 104 (751)
.+...+|||||++||... ....|.+++..+.. .+ ++..... +..+..++|+|. ++.|+..
T Consensus 485 ~V~~i~fs~dg~~latgg----------~D~~I~iwd~~~~~~~~~~~~~~~~~~~~---~~~v~~l~~~~~~~~~las~ 551 (793)
T PLN00181 485 LVCAIGFDRDGEFFATAG----------VNKKIKIFECESIIKDGRDIHYPVVELAS---RSKLSGICWNSYIKSQVASS 551 (793)
T ss_pred cEEEEEECCCCCEEEEEe----------CCCEEEEEECCcccccccccccceEEecc---cCceeeEEeccCCCCEEEEE
Confidence 477899999999998863 23556666654311 00 1100011 113567899875 6666655
Q ss_pred ecCCCCCCCCCCCCCCCCceeeccccccccchhhhhccCCccchhhhhhheeeEEEEEcC-CCC-ceecCCC-ceEEeee
Q 004475 105 IPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DGT-AKDFGTP-AVYTAVE 181 (751)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~G~-~~~lt~~-~~~~~~~ 181 (751)
..+ ..|.++|+ +++ ...+..+ ..+..++
T Consensus 552 ~~D-------------------------------------------------g~v~lWd~~~~~~~~~~~~H~~~V~~l~ 582 (793)
T PLN00181 552 NFE-------------------------------------------------GVVQVWDVARSQLVTEMKEHEKRVWSID 582 (793)
T ss_pred eCC-------------------------------------------------CeEEEEECCCCeEEEEecCCCCCEEEEE
Confidence 321 46777888 553 4445445 7788999
Q ss_pred eCC-CCceEEEEEecCCcccccccCCCceeEEEEeCCCceeeeeccCCCCCCCCCccCCccCCCceeeee-cCCCceEEE
Q 004475 182 PSP-DQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWR-ADKPSTLYW 259 (751)
Q Consensus 182 ~Sp-DG~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s-pdG~~~i~~ 259 (751)
|+| ||..|+..+.+ ..+.+||+.++........ ...+..+.|+ ++|+. ++.
T Consensus 583 ~~p~~~~~L~Sgs~D-------------g~v~iWd~~~~~~~~~~~~-------------~~~v~~v~~~~~~g~~-lat 635 (793)
T PLN00181 583 YSSADPTLLASGSDD-------------GSVKLWSINQGVSIGTIKT-------------KANICCVQFPSESGRS-LAF 635 (793)
T ss_pred EcCCCCCEEEEEcCC-------------CEEEEEECCCCcEEEEEec-------------CCCeEEEEEeCCCCCE-EEE
Confidence 997 77777665433 3688999976543211111 0123467885 56776 555
Q ss_pred EEeccCCCCccccCcccceeeccCCCCCCCCceEeEeeceeEE-EEEecCCceEEEeeeecccceeEEEecCCCC--CCc
Q 004475 260 VEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFS-VSWCDDSLALVNETWYKTSQTRTWLVCPGSK--DVA 336 (751)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~-~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~--~~~ 336 (751)
.+ ..+.|+++++.. .......+......+. +.|+ ++..|+.++. +..-.||-+..... ...
T Consensus 636 gs------------~dg~I~iwD~~~-~~~~~~~~~~h~~~V~~v~f~-~~~~lvs~s~--D~~ikiWd~~~~~~~~~~~ 699 (793)
T PLN00181 636 GS------------ADHKVYYYDLRN-PKLPLCTMIGHSKTVSYVRFV-DSSTLVSSST--DNTLKLWDLSMSISGINET 699 (793)
T ss_pred Ee------------CCCeEEEEECCC-CCccceEecCCCCCEEEEEEe-CCCEEEEEEC--CCEEEEEeCCCCccccCCc
Confidence 43 235788888741 1112233444455666 8887 6777766552 22234554432110 011
Q ss_pred ceeeeecccccccCCCCCCCeeeCCCCCEEEEeee
Q 004475 337 PRVLFDRVFENVYSDPGSPMMTRTSTGTNVIAKIK 371 (751)
Q Consensus 337 ~~~l~~~~~~~~~~~~~~~~~~~spDG~~l~~~~~ 371 (751)
+........... ..++|+|+|++|+..+.
T Consensus 700 ~l~~~~gh~~~i------~~v~~s~~~~~lasgs~ 728 (793)
T PLN00181 700 PLHSFMGHTNVK------NFVGLSVSDGYIATGSE 728 (793)
T ss_pred ceEEEcCCCCCe------eEEEEcCCCCEEEEEeC
Confidence 111111111111 12779999998888773
No 200
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=98.87 E-value=3e-06 Score=78.36 Aligned_cols=195 Identities=15% Similarity=0.238 Sum_probs=113.9
Q ss_pred cccceeecCC-CCeEEEEEeecccccccCCceeEEEEEcCCCC---eeeccCCCCccccceeeeeEEecCCcEEEEeecC
Q 004475 32 KINFVSWSPD-GKRIAFSVRVDEEDNVSSCKLRVWIADAETGE---AKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPS 107 (751)
Q Consensus 32 ~~~~p~~SPD-G~~iaf~~~~~~~~~~~~~~~~l~i~~~~~g~---~~~lt~~~~~~~~~~~~~~~wspDg~~l~~~~~~ 107 (751)
.+...+|+|- |..||-. .....|.+++..++. -+.+++... ...++.++|||.|++|+..+.+
T Consensus 16 r~W~~awhp~~g~ilAsc----------g~Dk~vriw~~~~~~s~~ck~vld~~h---krsVRsvAwsp~g~~La~aSFD 82 (312)
T KOG0645|consen 16 RVWSVAWHPGKGVILASC----------GTDKAVRIWSTSSGDSWTCKTVLDDGH---KRSVRSVAWSPHGRYLASASFD 82 (312)
T ss_pred cEEEEEeccCCceEEEee----------cCCceEEEEecCCCCcEEEEEeccccc---hheeeeeeecCCCcEEEEeecc
Confidence 4788999998 7766653 334567777765433 232322211 1258899999999999988664
Q ss_pred CCCCCCCCCCCCCCCceeeccccccccchhhhhccCCccchhhhhhheeeEEEEEcCCCC--c-eecCCC-ceEEeeeeC
Q 004475 108 SRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSLDGT--A-KDFGTP-AVYTAVEPS 183 (751)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~G~--~-~~lt~~-~~~~~~~~S 183 (751)
.. ..||.-. +|+ . ..|-.+ ..+..++||
T Consensus 83 ~t-----------------------------------------------~~Iw~k~-~~efecv~~lEGHEnEVK~Vaws 114 (312)
T KOG0645|consen 83 AT-----------------------------------------------VVIWKKE-DGEFECVATLEGHENEVKCVAWS 114 (312)
T ss_pred ce-----------------------------------------------EEEeecC-CCceeEEeeeeccccceeEEEEc
Confidence 21 2233221 332 1 122223 567899999
Q ss_pred CCCceEEEEEecCCcccccccCCCceeEEEEeCCC-ceeeeeccCCCCCCCCCccCCccCCCceeeeecCCCceEEEEEe
Q 004475 184 PDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDG-KLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEA 262 (751)
Q Consensus 184 pDG~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~spdG~~~i~~~~~ 262 (751)
++|.+|+..+.++ .+|+|..+. .+...+.-. ......+..+.|+|...- |+-.+
T Consensus 115 ~sG~~LATCSRDK-------------SVWiWe~deddEfec~aVL----------~~HtqDVK~V~WHPt~dl-L~S~S- 169 (312)
T KOG0645|consen 115 ASGNYLATCSRDK-------------SVWIWEIDEDDEFECIAVL----------QEHTQDVKHVIWHPTEDL-LFSCS- 169 (312)
T ss_pred CCCCEEEEeeCCC-------------eEEEEEecCCCcEEEEeee----------ccccccccEEEEcCCcce-eEEec-
Confidence 9999999876654 588888873 333322111 111123457899997664 33333
Q ss_pred ccCCCCccccCcccceeeccCCCCCCCC---ceEeEeeceeEE-EEEecCCceEEEeeeecccceeEEE
Q 004475 263 QDRGDANVEVSPRDIIYTQPAEPAEGEK---PEILHKLDLRFS-VSWCDDSLALVNETWYKTSQTRTWL 327 (751)
Q Consensus 263 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~---~~~l~~~~~~~~-~~~spdg~~l~~~~~~~~~~~~l~~ 327 (751)
..+.|.++.-++ +.. ...|......+- ..|.+.|.+|+..++ ...-.||+
T Consensus 170 -----------YDnTIk~~~~~~--dddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~sd--D~tv~Iw~ 223 (312)
T KOG0645|consen 170 -----------YDNTIKVYRDED--DDDWECVQTLDGHENTVWSLAFDNIGSRLVSCSD--DGTVSIWR 223 (312)
T ss_pred -----------cCCeEEEEeecC--CCCeeEEEEecCccceEEEEEecCCCceEEEecC--CcceEeee
Confidence 234454444431 222 233333444444 889999999988773 34457777
No 201
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=98.87 E-value=4.8e-07 Score=91.54 Aligned_cols=267 Identities=14% Similarity=0.160 Sum_probs=146.3
Q ss_pred eeEEeecCCCCCCCCcccccCCCCcc--cccceeecCCCCeEEEEEeecccccccCCceeEEEEEcCCCCeeeccCCCCc
Q 004475 6 GIGIHRLLPDDSLGPEKEVHGYPDGA--KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDI 83 (751)
Q Consensus 6 ~~~~~~~~~~~~~g~~~~l~~~~~~~--~~~~p~~SPDG~~iaf~~~~~~~~~~~~~~~~l~i~~~~~g~~~~lt~~~~~ 83 (751)
.|.+||+.+ |..++-=..+.+. .-...+||-|++++|-+.. ..|-|.+..+ ...| .....
T Consensus 283 ~l~IWDI~t----G~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~-----------~sisIyEtps--f~ll-d~Ksl 344 (698)
T KOG2314|consen 283 QLIIWDIAT----GLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTG-----------NSISIYETPS--FMLL-DKKSL 344 (698)
T ss_pred eEEEEEccc----cchhcceeccCCCccccceEEeccCCceeEEecc-----------ceEEEEecCc--eeee-ccccc
Confidence 578999998 8877532222233 2245689999999998642 4555555433 1111 22222
Q ss_pred cccceeeeeEEecCCcEEEEeecCCCCCCCCCCCCCCCCceeeccccccccchhhhhccCCccchhhhhhheeeEEEEEc
Q 004475 84 CLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGS 163 (751)
Q Consensus 84 ~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 163 (751)
... ++..+.|||-++.|||-+....... ..+-++.
T Consensus 345 ki~-gIr~FswsP~~~llAYwtpe~~~~p--------------------------------------------arvtL~e 379 (698)
T KOG2314|consen 345 KIS-GIRDFSWSPTSNLLAYWTPETNNIP--------------------------------------------ARVTLME 379 (698)
T ss_pred CCc-cccCcccCCCcceEEEEcccccCCc--------------------------------------------ceEEEEe
Confidence 222 4789999999999999865433321 2444455
Q ss_pred C-CCCceecCCCceE--EeeeeCCCCceEEEEEecCCcccccccCCCceeEEEEeCCCceeeeeccCCCCCCCCCccCCc
Q 004475 164 L-DGTAKDFGTPAVY--TAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSV 240 (751)
Q Consensus 164 ~-~G~~~~lt~~~~~--~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~ 240 (751)
+ +++.-+..+--.+ .-+.|-..|++|.|..+.-.... ....-+.+.++.+..+++- +-..++.
T Consensus 380 vPs~~~iRt~nlfnVsDckLhWQk~gdyLcvkvdR~tK~~---~~g~f~n~eIfrireKdIp-ve~velk---------- 445 (698)
T KOG2314|consen 380 VPSKREIRTKNLFNVSDCKLHWQKSGDYLCVKVDRHTKSK---VKGQFSNLEIFRIREKDIP-VEVVELK---------- 445 (698)
T ss_pred cCccceeeeccceeeeccEEEeccCCcEEEEEEEeecccc---ccceEeeEEEEEeeccCCC-ceeeecc----------
Confidence 5 4432222222222 35679999999999765432110 0111133444444333211 1111122
Q ss_pred cCCCceeeeecCCCceEEEEEeccCCCCccccCcccceeeccCCCCCCCCceEeEeeceeE-E-EEEecCCceEEEeeee
Q 004475 241 REGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRF-S-VSWCDDSLALVNETWY 318 (751)
Q Consensus 241 ~~~~~~~~~spdG~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~-~-~~~spdg~~l~~~~~~ 318 (751)
..+-.++|-|.|++ .+.++... ....-..|-+.. +...+..+...+... . +.|||-|++++.++-.
T Consensus 446 -e~vi~FaWEP~gdk-F~vi~g~~-------~k~tvsfY~~e~---~~~~~~lVk~~dk~~~N~vfwsPkG~fvvva~l~ 513 (698)
T KOG2314|consen 446 -ESVIAFAWEPHGDK-FAVISGNT-------VKNTVSFYAVET---NIKKPSLVKELDKKFANTVFWSPKGRFVVVAALV 513 (698)
T ss_pred -hheeeeeeccCCCe-EEEEEccc-------cccceeEEEeec---CCCchhhhhhhcccccceEEEcCCCcEEEEEEec
Confidence 22447899999999 55554221 111123444432 244555555554443 3 8999999998877643
Q ss_pred cccceeEEEecCCCCCCcceeeeecccccccCCCCCCCeeeCCCCCEEEEee
Q 004475 319 KTSQTRTWLVCPGSKDVAPRVLFDRVFENVYSDPGSPMMTRTSTGTNVIAKI 370 (751)
Q Consensus 319 ~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~spDG~~l~~~~ 370 (751)
+..+.|+-+|++-. ..+++. ...+. ....+.|.|.|++++..+
T Consensus 514 -s~~g~l~F~D~~~a--~~k~~~-~~eh~-----~at~veWDPtGRYvvT~s 556 (698)
T KOG2314|consen 514 -SRRGDLEFYDTDYA--DLKDTA-SPEHF-----AATEVEWDPTGRYVVTSS 556 (698)
T ss_pred -ccccceEEEecchh--hhhhcc-Ccccc-----ccccceECCCCCEEEEee
Confidence 34567888888752 222221 11111 111167999999998877
No 202
>PF02273 Acyl_transf_2: Acyl transferase; InterPro: IPR003157 LuxD proteins are bacterial acyl transferases. Together with an acyl-protein synthetase (LuxE) and reductase (LuxC), they form a multienzyme complex. This complex channels activated fatty acids into the aldehyde substrate for the luciferase-catalyzed bacterial bioluminescence reaction [, ]. ; GO: 0016746 transferase activity, transferring acyl groups, 0006631 fatty acid metabolic process; PDB: 1THT_B.
Probab=98.86 E-value=2.4e-07 Score=84.70 Aligned_cols=207 Identities=17% Similarity=0.149 Sum_probs=110.3
Q ss_pred EEcCCCceEEEEEEcCCCCCCCCCCCccEEEEEcCCCCcCcccCCcccCCCCccCCCCchHHHHHHhCCeEEEEcCCCCC
Q 004475 486 YQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGPSIPI 565 (751)
Q Consensus 486 ~~~~~~~~i~~~~~~P~~~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~v~~~~~~~~ 565 (751)
+.-.+|..|..|--.|....+. +.|+||+..|-+ ..+.. +..++.+|+.+||.|+..|....
T Consensus 7 i~~~~~~~I~vwet~P~~~~~~---~~~tiliA~Gf~--------------rrmdh-~agLA~YL~~NGFhViRyDsl~H 68 (294)
T PF02273_consen 7 IRLEDGRQIRVWETRPKNNEPK---RNNTILIAPGFA--------------RRMDH-FAGLAEYLSANGFHVIRYDSLNH 68 (294)
T ss_dssp EEETTTEEEEEEEE---TTS------S-EEEEE-TT---------------GGGGG-GHHHHHHHHTTT--EEEE---B-
T ss_pred eEcCCCCEEEEeccCCCCCCcc---cCCeEEEecchh--------------HHHHH-HHHHHHHHhhCCeEEEecccccc
Confidence 3345788999999999764433 368999998853 11211 23567899999999999555444
Q ss_pred CCCCCCCCCchhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEccCCCCCCCCc---
Q 004475 566 IGEGDKLPNDRFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGSYNKTLTP--- 642 (751)
Q Consensus 566 ~g~g~~~~~~~~~~~~~~d~~~~v~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~~d~~~~~--- 642 (751)
.|...............+++..+++||.+++ ..+++++--|.-|-+|...++.- + +.-+|...|+++...+.
T Consensus 69 vGlSsG~I~eftms~g~~sL~~V~dwl~~~g---~~~~GLIAaSLSaRIAy~Va~~i-~-lsfLitaVGVVnlr~TLe~a 143 (294)
T PF02273_consen 69 VGLSSGDINEFTMSIGKASLLTVIDWLATRG---IRRIGLIAASLSARIAYEVAADI-N-LSFLITAVGVVNLRDTLEKA 143 (294)
T ss_dssp ------------HHHHHHHHHHHHHHHHHTT------EEEEEETTHHHHHHHHTTTS----SEEEEES--S-HHHHHHHH
T ss_pred ccCCCCChhhcchHHhHHHHHHHHHHHHhcC---CCcchhhhhhhhHHHHHHHhhcc-C-cceEEEEeeeeeHHHHHHHH
Confidence 5543333344445677899999999999776 36799999999999999999855 3 67777777887622110
Q ss_pred -----cCc-----ccc---ccc-----chhhHHHHH-h----cCcccccCCCCCCEEEEEcCCCCCCCCChHHHHHHHHH
Q 004475 643 -----FGF-----QTE---FRT-----LWEATNVYI-E----MSPITHANKIKKPILIIHGEVDDKVGLFPMQAERFFDA 699 (751)
Q Consensus 643 -----~~~-----~~~---~~~-----~~~~~~~~~-~----~~~~~~~~~~~~P~li~~G~~D~~vp~~~~~~~~~~~~ 699 (751)
... +.. .+. .|- .+.+. . -+....++.+.+|++.++++.|..|. .....++...
T Consensus 144 l~~Dyl~~~i~~lp~dldfeGh~l~~~vFv-~dc~e~~w~~l~ST~~~~k~l~iP~iaF~A~~D~WV~--q~eV~~~~~~ 220 (294)
T PF02273_consen 144 LGYDYLQLPIEQLPEDLDFEGHNLGAEVFV-TDCFEHGWDDLDSTINDMKRLSIPFIAFTANDDDWVK--QSEVEELLDN 220 (294)
T ss_dssp HSS-GGGS-GGG--SEEEETTEEEEHHHHH-HHHHHTT-SSHHHHHHHHTT--S-EEEEEETT-TTS---HHHHHHHHTT
T ss_pred hccchhhcchhhCCCcccccccccchHHHH-HHHHHcCCccchhHHHHHhhCCCCEEEEEeCCCcccc--HHHHHHHHHh
Confidence 000 000 000 000 00000 0 12234567789999999999999987 7777666665
Q ss_pred HHhCCCcEEEEEeCCCCCcCC
Q 004475 700 LKGHGALSRLVLLPFEHHVYA 720 (751)
Q Consensus 700 l~~~~~~~~~~~~~~~~H~~~ 720 (751)
+.. ..+++..++|+.|...
T Consensus 221 ~~s--~~~klysl~Gs~HdL~ 239 (294)
T PF02273_consen 221 INS--NKCKLYSLPGSSHDLG 239 (294)
T ss_dssp -TT----EEEEEETT-SS-TT
T ss_pred cCC--CceeEEEecCccchhh
Confidence 543 3688999999999874
No 203
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=98.86 E-value=5.8e-08 Score=96.47 Aligned_cols=223 Identities=10% Similarity=0.052 Sum_probs=137.0
Q ss_pred CcceeEEeecCCCCCCCCcccccCCCCcccccceeecCCCCeEEEEEeecccccccCCceeEEEEEcCCCCeeeccCCCC
Q 004475 3 FFTGIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPD 82 (751)
Q Consensus 3 ~~~~~~~~~~~~~~~~g~~~~l~~~~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~~~~~l~i~~~~~g~~~~lt~~~~ 82 (751)
....|++|++-. ..+-.|... .....+...+||++|+.+.-++ ....|.++|+++|+...-.....
T Consensus 235 mD~~vklW~vy~--~~~~lrtf~--gH~k~Vrd~~~s~~g~~fLS~s----------fD~~lKlwDtETG~~~~~f~~~~ 300 (503)
T KOG0282|consen 235 MDGLVKLWNVYD--DRRCLRTFK--GHRKPVRDASFNNCGTSFLSAS----------FDRFLKLWDTETGQVLSRFHLDK 300 (503)
T ss_pred CCceEEEEEEec--Ccceehhhh--cchhhhhhhhccccCCeeeeee----------cceeeeeeccccceEEEEEecCC
Confidence 456799999976 223333332 2334689999999999998863 45788888999998544322222
Q ss_pred ccccceeeeeEEecCCcEEEEeecCCCCCCCCCCCCCCCCceeeccccccccchhhhhccCCccchhhhhhheeeEEEEE
Q 004475 83 ICLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLG 162 (751)
Q Consensus 83 ~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 162 (751)
....+.+.||+..+++.... ...|..+
T Consensus 301 -----~~~cvkf~pd~~n~fl~G~s------------------------------------------------d~ki~~w 327 (503)
T KOG0282|consen 301 -----VPTCVKFHPDNQNIFLVGGS------------------------------------------------DKKIRQW 327 (503)
T ss_pred -----CceeeecCCCCCcEEEEecC------------------------------------------------CCcEEEE
Confidence 24567899999777766221 1478888
Q ss_pred cC-CCCcee-cCCC-ceEEeeeeCCCCceEEEEEecCCcccccccCCCceeEEEEeCCCceeeeeccCCCCCCCCCccCC
Q 004475 163 SL-DGTAKD-FGTP-AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNS 239 (751)
Q Consensus 163 ~~-~G~~~~-lt~~-~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~ 239 (751)
|. +|++.+ ...+ +.+..+.|-++|++++.++.+. .+.+|+-.......+-..+..
T Consensus 328 DiRs~kvvqeYd~hLg~i~~i~F~~~g~rFissSDdk-------------s~riWe~~~~v~ik~i~~~~~--------- 385 (503)
T KOG0282|consen 328 DIRSGKVVQEYDRHLGAILDITFVDEGRRFISSSDDK-------------SVRIWENRIPVPIKNIADPEM--------- 385 (503)
T ss_pred eccchHHHHHHHhhhhheeeeEEccCCceEeeeccCc-------------cEEEEEcCCCccchhhcchhh---------
Confidence 88 785433 3333 7788999999999998877654 355666654433222111111
Q ss_pred ccCCCceeeeecCCCceEEEEEeccCCCCccccCcccceeeccCCCCCCCCceEeEee--ceeEE--EEEecCCceEEEe
Q 004475 240 VREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKL--DLRFS--VSWCDDSLALVNE 315 (751)
Q Consensus 240 ~~~~~~~~~~spdG~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~--~~~~~--~~~spdg~~l~~~ 315 (751)
.....++.+|+|++ ++.-+ ..+.|+++.+.+.-....+....+ ...+. +.|||||++|+.+
T Consensus 386 --hsmP~~~~~P~~~~-~~aQs------------~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~v~fSpDG~~l~SG 450 (503)
T KOG0282|consen 386 --HTMPCLTLHPNGKW-FAAQS------------MDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQVDFSPDGRTLCSG 450 (503)
T ss_pred --ccCcceecCCCCCe-ehhhc------------cCceEEEEecccccccCHhhhhcceeccCceeeEEEcCCCCeEEee
Confidence 22347899999997 33322 224566655432111111222221 12233 8999999999875
Q ss_pred eeecccceeEEEecCCCC
Q 004475 316 TWYKTSQTRTWLVCPGSK 333 (751)
Q Consensus 316 ~~~~~~~~~l~~~~~~~~ 333 (751)
. ....+|..|-.+.
T Consensus 451 d----sdG~v~~wdwkt~ 464 (503)
T KOG0282|consen 451 D----SDGKVNFWDWKTT 464 (503)
T ss_pred c----CCccEEEeechhh
Confidence 5 3457888887763
No 204
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=98.85 E-value=9.4e-06 Score=82.84 Aligned_cols=352 Identities=12% Similarity=0.101 Sum_probs=180.1
Q ss_pred eeEEeecCCCCCCCCcccccCCCCcccccceeecCCCCeEEEEEeecccccccCCceeEEEEEcCCCCeeeccCCCCccc
Q 004475 6 GIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICL 85 (751)
Q Consensus 6 ~~~~~~~~~~~~~g~~~~l~~~~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~~~~~l~i~~~~~g~~~~lt~~~~~~~ 85 (751)
.+++++..+ .....+......-........+|++|+.+|| .....++|.+...+. ..+|.....
T Consensus 12 ~~~l~~~~~--~~~~~~~f~~~~~~~~~~v~~~S~~G~lfA~-----------~~~~~v~i~~~~~~~-~~lt~~~~~-- 75 (566)
T KOG2315|consen 12 GFYLFNGPG--SKDAVTVFEQNKTSRPCNVFAYSNNGRLFAY-----------SDNQVVKVFEIATLK-VVLCVELKK-- 75 (566)
T ss_pred eeEEeccCC--ccccccccccCCCCCcceeEEEcCCCcEEEE-----------EcCCeEEEEEccCCc-EEEEeccce--
Confidence 567777765 2222222221111223467899999999999 445788888877765 334333321
Q ss_pred cceeeeeEEecCCcEEEEeecCCCCCCCCCCCCCCCCceeec----cccccccchhhhh--ccCCccchhhhhhheeeEE
Q 004475 86 NAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSN----EQKNIIISRMTDN--LLKDEYDESLFDYYTTAQL 159 (751)
Q Consensus 86 ~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~l 159 (751)
...+.+||-|++|.--....... +.... .+-.+.. ...........+. ...++-|+.+..+.-...+
T Consensus 76 ---~~~L~fSP~g~yL~T~e~~~i~~-~~~~~---~pn~~v~~vet~~~~s~~q~k~Q~~W~~qfs~dEsl~arlv~nev 148 (566)
T KOG2315|consen 76 ---TYDLLFSPKGNYLLTWEPWAIYG-PKNAS---NPNVLVYNVETGVQRSQIQKKMQNGWVPQFSIDESLAARLVSNEV 148 (566)
T ss_pred ---eeeeeeccccccccccccccccc-CCCCC---CCceeeeeeccceehhheehhhhcCcccccccchhhhhhhhcceE
Confidence 35678999998875331111100 00000 0000000 0000011111122 3445556666665555677
Q ss_pred EEEcCCC---CceecCCCceEEeeeeCCCCc--eEEEEEecCCcccccccCCCceeEEEEeCC-CceeeeeccCCCCCCC
Q 004475 160 VLGSLDG---TAKDFGTPAVYTAVEPSPDQK--YVLITSMHRPYSYKVPCARFSQKVQVWTTD-GKLVRELCDLPPAEDI 233 (751)
Q Consensus 160 ~~~~~~G---~~~~lt~~~~~~~~~~SpDG~--~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~-~~~~~~l~~~~~~~~~ 233 (751)
+.+++.+ ...+|. ...+..+.+||-+. .|++-..+.. .....+.+|... .+....+....
T Consensus 149 ~f~~~~~f~~~~~kl~-~~~i~~f~lSpgp~~~~vAvyvPe~k--------GaPa~vri~~~~~~~~~~~~a~ks----- 214 (566)
T KOG2315|consen 149 QFYDLGSFKTIQHKLS-VSGITMLSLSPGPEPPFVAVYVPEKK--------GAPASVRIYKYPEEGQHQPVANKS----- 214 (566)
T ss_pred EEEecCCccceeeeee-ccceeeEEecCCCCCceEEEEccCCC--------CCCcEEEEeccccccccchhhhcc-----
Confidence 7777744 222222 24566788888754 4444322211 112233333322 11111111110
Q ss_pred CCccCCccCCCceeeeecCCCceEEEEEeccCCCCccccCcccceeeccCCCCCCCCceEeEeeceeEE-EEEecCCceE
Q 004475 234 PVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFS-VSWCDDSLAL 312 (751)
Q Consensus 234 ~~~~~~~~~~~~~~~~spdG~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~-~~~spdg~~l 312 (751)
.|..+ --.+.|.+-|..+|++++.. -.....+--....||+++++ +.....-....+.+. +.|+|+|+-+
T Consensus 215 --FFkad---kvqm~WN~~gt~LLvLastd-VDktn~SYYGEq~Lyll~t~---g~s~~V~L~k~GPVhdv~W~~s~~EF 285 (566)
T KOG2315|consen 215 --FFKAD---KVQMKWNKLGTALLVLASTD-VDKTNASYYGEQTLYLLATQ---GESVSVPLLKEGPVHDVTWSPSGREF 285 (566)
T ss_pred --ccccc---eeEEEeccCCceEEEEEEEe-ecCCCccccccceEEEEEec---CceEEEecCCCCCceEEEECCCCCEE
Confidence 11111 12689999999977776532 10000011123489999885 433333334466777 9999999987
Q ss_pred EEeeeecccceeEEEecCCCCCCcceeeeecccccccCCCCCCCeeeCCCCCEEEEeeeecCCcceEEEEccCCCCCCCC
Q 004475 313 VNETWYKTSQTRTWLVCPGSKDVAPRVLFDRVFENVYSDPGSPMMTRTSTGTNVIAKIKKENDEQIYILLNGRGFTPEGN 392 (751)
Q Consensus 313 ~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~spDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 392 (751)
+.....-. ..+-+.|+.+ ..+.+........ ..|+|-|+.|+++.-+. -
T Consensus 286 ~VvyGfMP--Akvtifnlr~-----~~v~df~egpRN~------~~fnp~g~ii~lAGFGN------------------L 334 (566)
T KOG2315|consen 286 AVVYGFMP--AKVTIFNLRG-----KPVFDFPEGPRNT------AFFNPHGNIILLAGFGN------------------L 334 (566)
T ss_pred EEEEeccc--ceEEEEcCCC-----CEeEeCCCCCccc------eEECCCCCEEEEeecCC------------------C
Confidence 66553333 3455567766 2444332222111 66999999999888431 2
Q ss_pred CceeEEEecCCCceeEEeeccchhhhhceeeeecCCcceeeccCCCEEEEEEecC
Q 004475 393 IPFLDLFDINTGSKERIWESNREKYFETAVALVFGQGEEDINLNQLKILTSKESK 447 (751)
Q Consensus 393 ~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~ 447 (751)
+..+-+||+.+.+. +..... .+-..+.|+|||++++....++
T Consensus 335 ~G~mEvwDv~n~K~--i~~~~a-----------~~tt~~eW~PdGe~flTATTaP 376 (566)
T KOG2315|consen 335 PGDMEVWDVPNRKL--IAKFKA-----------ANTTVFEWSPDGEYFLTATTAP 376 (566)
T ss_pred CCceEEEeccchhh--cccccc-----------CCceEEEEcCCCcEEEEEeccc
Confidence 34677888876433 222111 1112368999999988776553
No 205
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=98.83 E-value=7.2e-07 Score=88.56 Aligned_cols=257 Identities=14% Similarity=0.094 Sum_probs=152.0
Q ss_pred CCcceeEEeecCCCCCCCCcccccCCCCcccccceeecCCCCeEEEEEeecccccccCCceeEEEEEcCCCCeeeccCCC
Q 004475 2 PFFTGIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESP 81 (751)
Q Consensus 2 ~~~~~~~~~~~~~~~~~g~~~~l~~~~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~~~~~l~i~~~~~g~~~~lt~~~ 81 (751)
+|...+.+|+..+ +....+.. ....+....|+-+|.+|+-.. -...+.++|..+|+.+|.....
T Consensus 254 ~~~G~~riw~~~G----~l~~tl~~--HkgPI~slKWnk~G~yilS~~----------vD~ttilwd~~~g~~~q~f~~~ 317 (524)
T KOG0273|consen 254 SEDGEARIWNKDG----NLISTLGQ--HKGPIFSLKWNKKGTYILSGG----------VDGTTILWDAHTGTVKQQFEFH 317 (524)
T ss_pred ecCcEEEEEecCc----hhhhhhhc--cCCceEEEEEcCCCCEEEecc----------CCccEEEEeccCceEEEeeeec
Confidence 3455678888888 76666653 334689999999999998853 3356677788888866654333
Q ss_pred CccccceeeeeEEecCCcEEEEeecCCCCCCCCCCCCCCCCceeeccccccccchhhhhccCCccchhhhhhheeeEEEE
Q 004475 82 DICLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVL 161 (751)
Q Consensus 82 ~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 161 (751)
+.. .-.+.|-.+.++.....+ ..-.++.
T Consensus 318 s~~----~lDVdW~~~~~F~ts~td------------------------------------------------~~i~V~k 345 (524)
T KOG0273|consen 318 SAP----ALDVDWQSNDEFATSSTD------------------------------------------------GCIHVCK 345 (524)
T ss_pred cCC----ccceEEecCceEeecCCC------------------------------------------------ceEEEEE
Confidence 211 135688777764432211 0023444
Q ss_pred EcCCCCceecCCC-ceEEeeeeCCCCceEEEEEecCCcccccccCCCceeEEEEeCCC-ceeeeeccCCCCCCCCCccCC
Q 004475 162 GSLDGTAKDFGTP-AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDG-KLVRELCDLPPAEDIPVCYNS 239 (751)
Q Consensus 162 ~~~~G~~~~lt~~-~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~-~~~~~l~~~~~~~~~~~~~~~ 239 (751)
++.++....+..+ +.+..+.|.|.|+.|+-.+.+. .+-+|.... .....| ..
T Consensus 346 v~~~~P~~t~~GH~g~V~alk~n~tg~LLaS~SdD~-------------TlkiWs~~~~~~~~~l-------------~~ 399 (524)
T KOG0273|consen 346 VGEDRPVKTFIGHHGEVNALKWNPTGSLLASCSDDG-------------TLKIWSMGQSNSVHDL-------------QA 399 (524)
T ss_pred ecCCCcceeeecccCceEEEEECCCCceEEEecCCC-------------eeEeeecCCCcchhhh-------------hh
Confidence 4445555555545 8889999999999888776543 456776432 211111 12
Q ss_pred ccCCCceeeeecCCCceEEEEEeccCCCCccccCcccceeeccCCCCCCCCceEeEeeceeEE-EEEecCCceEEEeeee
Q 004475 240 VREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFS-VSWCDDSLALVNETWY 318 (751)
Q Consensus 240 ~~~~~~~~~~spdG~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~-~~~spdg~~l~~~~~~ 318 (751)
....+..+.|||+|.- -. -...+...........+.+++++. +.....+..+...+. ++|||||++|++.+.
T Consensus 400 Hskei~t~~wsp~g~v--~~--n~~~~~~l~sas~dstV~lwdv~~--gv~i~~f~kH~~pVysvafS~~g~ylAsGs~- 472 (524)
T KOG0273|consen 400 HSKEIYTIKWSPTGPV--TS--NPNMNLMLASASFDSTVKLWDVES--GVPIHTLMKHQEPVYSVAFSPNGRYLASGSL- 472 (524)
T ss_pred hccceeeEeecCCCCc--cC--CCcCCceEEEeecCCeEEEEEccC--CceeEeeccCCCceEEEEecCCCcEEEecCC-
Confidence 2233557789988853 00 011111111222345777788752 334455556666777 999999999998662
Q ss_pred cccceeEEEecCCCCCCcceeeeecccccccCCCCCCCeeeCCCCCEEEEeee
Q 004475 319 KTSQTRTWLVCPGSKDVAPRVLFDRVFENVYSDPGSPMMTRTSTGTNVIAKIK 371 (751)
Q Consensus 319 ~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~spDG~~l~~~~~ 371 (751)
...|.+.+..++ +..+-...+ . +.+.++|+.+|..|.....
T Consensus 473 ---dg~V~iws~~~~--~l~~s~~~~-~------~Ifel~Wn~~G~kl~~~~s 513 (524)
T KOG0273|consen 473 ---DGCVHIWSTKTG--KLVKSYQGT-G------GIFELCWNAAGDKLGACAS 513 (524)
T ss_pred ---CCeeEeccccch--heeEeecCC-C------eEEEEEEcCCCCEEEEEec
Confidence 345666666663 212211111 1 1222889999998887773
No 206
>COG4188 Predicted dienelactone hydrolase [General function prediction only]
Probab=98.83 E-value=4.4e-08 Score=96.57 Aligned_cols=219 Identities=19% Similarity=0.165 Sum_probs=121.7
Q ss_pred eEEEEEEcCC-CceEEEEEEcCCCCCC-CCCCCccEEEEEcCCCCcCcccCCcccCCCCccCCCCchHHHHHHhCCeEEE
Q 004475 481 KEMIKYQRKD-GVPLTATLYLPPGYDQ-SKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVL 558 (751)
Q Consensus 481 ~e~i~~~~~~-~~~i~~~~~~P~~~~~-~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~v~ 558 (751)
...+++.... +.++...+++|..... ....++|+|++-||.|.. ..+ +.+.+..+++.||+|.
T Consensus 38 ~~~i~~~~~~r~~~~~v~~~~p~~~~~~~~~~~~PlvvlshG~Gs~-----------~~~----f~~~A~~lAs~Gf~Va 102 (365)
T COG4188 38 FVTITLNDPQRDRERPVDLRLPQGGTGTVALYLLPLVVLSHGSGSY-----------VTG----FAWLAEHLASYGFVVA 102 (365)
T ss_pred EEEEeccCcccCCccccceeccCCCccccccCcCCeEEecCCCCCC-----------ccc----hhhhHHHHhhCceEEE
Confidence 5556665543 5578999999976422 112369999999996511 122 2367889999999999
Q ss_pred EcCCCCCCCCCCCCC---C-----chhHHHHHHHHHHHHHHHHHc---C----CCCCCcEEEEEeChHHHHHHHHHHhCC
Q 004475 559 AGPSIPIIGEGDKLP---N-----DRFVEQLVSSAEAAVEEVVRR---G----VADPSRIAVGGHSYGAFMTAHLLAHAP 623 (751)
Q Consensus 559 ~~~~~~~~g~g~~~~---~-----~~~~~~~~~d~~~~v~~l~~~---~----~id~~~i~l~G~S~GG~~a~~~a~~~p 623 (751)
.++..+ .-.|+... . ....-+...|+..++++|.+. + .+|+.+|+++|||+||+.++.++.-..
T Consensus 103 ~~~hpg-s~~~~~~~~~~~~~~~~p~~~~erp~dis~lLd~L~~~~~sP~l~~~ld~~~Vgv~GhS~GG~T~m~laGA~~ 181 (365)
T COG4188 103 APDHPG-SNAGGAPAAYAGPGSYAPAEWWERPLDISALLDALLQLTASPALAGRLDPQRVGVLGHSFGGYTAMELAGAEL 181 (365)
T ss_pred eccCCC-cccccCChhhcCCcccchhhhhcccccHHHHHHHHHHhhcCcccccccCccceEEEecccccHHHHHhccccc
Confidence 844322 22222111 0 011123457888888888876 4 478999999999999999998875443
Q ss_pred Cc---eeEEEEcc-CCCCCCCCccCcccccccchhhHHHHHhcCc-----------------ccccCCCCCCEEEEEcCC
Q 004475 624 HL---FCCGIARS-GSYNKTLTPFGFQTEFRTLWEATNVYIEMSP-----------------ITHANKIKKPILIIHGEV 682 (751)
Q Consensus 624 ~~---~~~~v~~~-~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~P~li~~G~~ 682 (751)
+. ...+..-+ -..+..........+....|.....+...++ ..-+.+++.|++++.|..
T Consensus 182 ~~~~~~~~C~~~~~~~~~~~~~~~~~l~q~~av~~~~~~~~~rDpriravvA~~p~~~~~Fg~tgl~~v~~P~~~~a~s~ 261 (365)
T COG4188 182 DAEALLQHCESASRICLDPPGLNGRLLNQCAAVWLPRQAYDLRDPRIRAVVAINPALGMIFGTTGLVKVTDPVLLAAGSA 261 (365)
T ss_pred cHHHHHHHhhhhhhcccCCCCcChhhhccccccccchhhhccccccceeeeeccCCcccccccccceeeecceeeecccc
Confidence 21 11111000 0000000000000111111111111111111 123467889999999999
Q ss_pred CCCCCCChHH-HHHHHHHHHhCCCcEEEEEeCCCCCcC
Q 004475 683 DDKVGLFPMQ-AERFFDALKGHGALSRLVLLPFEHHVY 719 (751)
Q Consensus 683 D~~vp~~~~~-~~~~~~~l~~~~~~~~~~~~~~~~H~~ 719 (751)
|...| +.. ....+..|. +....+.+.|++.|.-
T Consensus 262 D~~aP--~~~~~~~~f~~l~--g~~k~~~~vp~a~h~s 295 (365)
T COG4188 262 DGFAP--PVTEQIRPFGYLP--GALKYLRLVPGATHFS 295 (365)
T ss_pred cccCC--cccccccccccCC--cchhheeecCCCcccc
Confidence 99876 332 222333332 3334688899999964
No 207
>cd00312 Esterase_lipase Esterases and lipases (includes fungal lipases, cholinesterases, etc.) These enzymes act on carboxylic esters (EC: 3.1.1.-). The catalytic apparatus involves three residues (catalytic triad): a serine, a glutamate or aspartate and a histidine.These catalytic residues are responsible for the nucleophilic attack on the carbonyl carbon atom of the ester bond. In contrast with other alpha/beta hydrolase fold family members, p-nitrobenzyl esterase and acetylcholine esterase have a Glu instead of Asp at the active site carboxylate.
Probab=98.82 E-value=1.2e-08 Score=112.03 Aligned_cols=129 Identities=18% Similarity=0.153 Sum_probs=88.5
Q ss_pred eEEEEEEcCCCCCCCCCCCccEEEEEcCCCCcCcccCCcccCCCCccCCCCchHHHHHHhC-C-eEEEEcCCC-CCCCCC
Q 004475 493 PLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLAR-R-FAVLAGPSI-PIIGEG 569 (751)
Q Consensus 493 ~i~~~~~~P~~~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-G-~~v~~~~~~-~~~g~g 569 (751)
-+...+|.|....+ ..++|+||++|||||..++.. .. ....++.+ + ++|+.++|+ +..|+.
T Consensus 78 cl~l~i~~p~~~~~--~~~~pv~v~ihGG~~~~g~~~--------~~------~~~~~~~~~~~~~vv~~~yRlg~~g~~ 141 (493)
T cd00312 78 CLYLNVYTPKNTKP--GNSLPVMVWIHGGGFMFGSGS--------LY------PGDGLAREGDNVIVVSINYRLGVLGFL 141 (493)
T ss_pred CCeEEEEeCCCCCC--CCCCCEEEEEcCCccccCCCC--------CC------ChHHHHhcCCCEEEEEecccccccccc
Confidence 47778888875432 235899999999987544321 11 12334443 3 899998886 555554
Q ss_pred CCCCCchhHHHHHHHHHHHHHHHHHc---CCCCCCcEEEEEeChHHHHHHHHHHhC--CCceeEEEEccCCCC
Q 004475 570 DKLPNDRFVEQLVSSAEAAVEEVVRR---GVADPSRIAVGGHSYGAFMTAHLLAHA--PHLFCCGIARSGSYN 637 (751)
Q Consensus 570 ~~~~~~~~~~~~~~d~~~~v~~l~~~---~~id~~~i~l~G~S~GG~~a~~~a~~~--p~~~~~~v~~~~~~d 637 (751)
............+.|+..+++|+++. -..|+++|.|+|+|+||+++..++... +..|+++|+.+|...
T Consensus 142 ~~~~~~~~~n~g~~D~~~al~wv~~~i~~fggd~~~v~~~G~SaG~~~~~~~~~~~~~~~lf~~~i~~sg~~~ 214 (493)
T cd00312 142 STGDIELPGNYGLKDQRLALKWVQDNIAAFGGDPDSVTIFGESAGGASVSLLLLSPDSKGLFHRAISQSGSAL 214 (493)
T ss_pred cCCCCCCCcchhHHHHHHHHHHHHHHHHHhCCCcceEEEEeecHHHHHhhhHhhCcchhHHHHHHhhhcCCcc
Confidence 33221122234578999999999875 236999999999999999999888763 457899999988654
No 208
>KOG2564 consensus Predicted acetyltransferases and hydrolases with the alpha/beta hydrolase fold [General function prediction only]
Probab=98.81 E-value=1e-07 Score=88.76 Aligned_cols=123 Identities=22% Similarity=0.285 Sum_probs=81.2
Q ss_pred ceEEEEEEcCCCceEEEEEEcCCCCCCCCCCCccEEEEEcCCCCcCcccCCcccCCCCccCCCCchHHHHHHh-CCeEEE
Q 004475 480 QKEMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLA-RRFAVL 558 (751)
Q Consensus 480 ~~e~i~~~~~~~~~i~~~~~~P~~~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~G~~v~ 558 (751)
+.+.+.++..+. ++..++-+|.. + .-|++++.||+|..+ -.|. .++..+.. --..++
T Consensus 49 ekedv~i~~~~~-t~n~Y~t~~~~----t--~gpil~l~HG~G~S~-----------LSfA----~~a~el~s~~~~r~~ 106 (343)
T KOG2564|consen 49 EKEDVSIDGSDL-TFNVYLTLPSA----T--EGPILLLLHGGGSSA-----------LSFA----IFASELKSKIRCRCL 106 (343)
T ss_pred cccccccCCCcc-eEEEEEecCCC----C--CccEEEEeecCcccc-----------hhHH----HHHHHHHhhcceeEE
Confidence 345666665444 68888888863 1 269999999986322 1111 23334443 356667
Q ss_pred EcCCCCCCCCCCCCCC---chhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhC--CCceeEEEE
Q 004475 559 AGPSIPIIGEGDKLPN---DRFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHA--PHLFCCGIA 631 (751)
Q Consensus 559 ~~~~~~~~g~g~~~~~---~~~~~~~~~d~~~~v~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~--p~~~~~~v~ 631 (751)
+ +|.+|+|++... ....+....|+...++++-.. .+.+|+|+||||||.+|.+.|... |. +.+++.
T Consensus 107 a---~DlRgHGeTk~~~e~dlS~eT~~KD~~~~i~~~fge---~~~~iilVGHSmGGaIav~~a~~k~lps-l~Gl~v 177 (343)
T KOG2564|consen 107 A---LDLRGHGETKVENEDDLSLETMSKDFGAVIKELFGE---LPPQIILVGHSMGGAIAVHTAASKTLPS-LAGLVV 177 (343)
T ss_pred E---eeccccCccccCChhhcCHHHHHHHHHHHHHHHhcc---CCCceEEEeccccchhhhhhhhhhhchh-hhceEE
Confidence 7 788899987432 233567788999888888543 346799999999999998887653 44 444443
No 209
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=98.80 E-value=3.9e-07 Score=91.37 Aligned_cols=239 Identities=8% Similarity=0.082 Sum_probs=130.2
Q ss_pred eEEEEEcCCC------CceecCCC--ceEEeeeeCCCCceEEEEEecCCcccccccCCCceeEEEEeCCCceeeeeccCC
Q 004475 157 AQLVLGSLDG------TAKDFGTP--AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLP 228 (751)
Q Consensus 157 ~~l~~~~~~G------~~~~lt~~--~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~ 228 (751)
..+..+|+.| .-++|... ..+....||+.|..|++.+... +.-++|.+|.+..+...+.
T Consensus 189 y~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvsg~a-------------qakl~DRdG~~~~e~~KGD 255 (641)
T KOG0772|consen 189 YTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILVVSGSA-------------QAKLLDRDGFEIVEFSKGD 255 (641)
T ss_pred ceEEEEecccccccchhhhccCcccccccceeeecCCCCeEEEEecCc-------------ceeEEccCCceeeeeeccc
Confidence 4566677766 12334322 5677999999999999886543 3456777766554433322
Q ss_pred CCCCCCCccCCccCCCceeeeecCCCceEEEEEeccCCCCccccCcccceeeccCCCCCCCCceEeEe---ecee--EE-
Q 004475 229 PAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHK---LDLR--FS- 302 (751)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~spdG~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~---~~~~--~~- 302 (751)
-....-..-...-..+..-.|+|+.+. .+++.+ ..+.|.+|+++ ...+....+.. .... ..
T Consensus 256 QYI~Dm~nTKGHia~lt~g~whP~~k~-~FlT~s-----------~DgtlRiWdv~-~~k~q~qVik~k~~~g~Rv~~ts 322 (641)
T KOG0772|consen 256 QYIRDMYNTKGHIAELTCGCWHPDNKE-EFLTCS-----------YDGTLRIWDVN-NTKSQLQVIKTKPAGGKRVPVTS 322 (641)
T ss_pred hhhhhhhccCCceeeeeccccccCccc-ceEEec-----------CCCcEEEEecC-CchhheeEEeeccCCCcccCcee
Confidence 110000000111123456699999998 555432 33567777774 22233333322 2222 23
Q ss_pred EEEecCCceEEEeeeecccceeEEEecCCCCCCcceeeeec---ccccccCCCCCCCeeeCCCCCEEEEeeeecCCcceE
Q 004475 303 VSWCDDSLALVNETWYKTSQTRTWLVCPGSKDVAPRVLFDR---VFENVYSDPGSPMMTRTSTGTNVIAKIKKENDEQIY 379 (751)
Q Consensus 303 ~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~---~~~~~~~~~~~~~~~~spDG~~l~~~~~~~~~~~~~ 379 (751)
.+|++||++|+.+. ..+..++|...-.+ ..+...... ..++... ++||+||++|+..+.+.
T Consensus 323 C~~nrdg~~iAagc--~DGSIQ~W~~~~~~--v~p~~~vk~AH~~g~~Its------i~FS~dg~~LlSRg~D~------ 386 (641)
T KOG0772|consen 323 CAWNRDGKLIAAGC--LDGSIQIWDKGSRT--VRPVMKVKDAHLPGQDITS------ISFSYDGNYLLSRGFDD------ 386 (641)
T ss_pred eecCCCcchhhhcc--cCCceeeeecCCcc--cccceEeeeccCCCCceeE------EEeccccchhhhccCCC------
Confidence 79999999987766 33445777653322 222222211 1112222 88999999998877432
Q ss_pred EEEccCCCCCCCCCceeEEEecCCCceeEEeeccchhhhhceeeeecCCcceeeccCCCEEEEEEec---CCCCCeEEEE
Q 004475 380 ILLNGRGFTPEGNIPFLDLFDINTGSKERIWESNREKYFETAVALVFGQGEEDINLNQLKILTSKES---KTEITQYHIL 456 (751)
Q Consensus 380 ~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~---~~~~~~l~~~ 456 (751)
.|.+||+..-+ +.|..-. ...... ....+.||||.+ |+++..+ ...++.|+.+
T Consensus 387 ---------------tLKvWDLrq~k-kpL~~~t------gL~t~~-~~tdc~FSPd~k-li~TGtS~~~~~~~g~L~f~ 442 (641)
T KOG0772|consen 387 ---------------TLKVWDLRQFK-KPLNVRT------GLPTPF-PGTDCCFSPDDK-LILTGTSAPNGMTAGTLFFF 442 (641)
T ss_pred ---------------ceeeeeccccc-cchhhhc------CCCccC-CCCccccCCCce-EEEecccccCCCCCceEEEE
Confidence 78899986432 2221110 011111 123489999997 5555443 2345668888
Q ss_pred EcCCC
Q 004475 457 SWPLK 461 (751)
Q Consensus 457 ~~~~g 461 (751)
|..+-
T Consensus 443 d~~t~ 447 (641)
T KOG0772|consen 443 DRMTL 447 (641)
T ss_pred eccce
Confidence 86553
No 210
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=98.78 E-value=1.5e-07 Score=90.23 Aligned_cols=109 Identities=17% Similarity=0.236 Sum_probs=76.9
Q ss_pred CCcccccceeecCCCCeEEEEEeecccccccCCceeEEEEEcCCCCeeecc-CCCCccccceeeeeEEecCCcEEEEeec
Q 004475 28 PDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLF-ESPDICLNAVFGSFVWVNNSTLLIFTIP 106 (751)
Q Consensus 28 ~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~~~~~l~i~~~~~g~~~~lt-~~~~~~~~~~~~~~~wspDg~~l~~~~~ 106 (751)
++...+.+-+|.+||..++-.+ -+...+.|+++++|...+|- .+.+ ++..+.|||||.+|+..+.
T Consensus 193 pgh~pVtsmqwn~dgt~l~tAS---------~gsssi~iWdpdtg~~~pL~~~glg-----g~slLkwSPdgd~lfaAt~ 258 (445)
T KOG2139|consen 193 PGHNPVTSMQWNEDGTILVTAS---------FGSSSIMIWDPDTGQKIPLIPKGLG-----GFSLLKWSPDGDVLFAATC 258 (445)
T ss_pred CCCceeeEEEEcCCCCEEeecc---------cCcceEEEEcCCCCCcccccccCCC-----ceeeEEEcCCCCEEEEecc
Confidence 4444688999999999998865 45688999999999988885 2222 5788999999998887744
Q ss_pred CCCCCCCCCCCCCCCCceeeccccccccchhhhhccCCccchhhhhhheeeEEEEEcCCC-CceecCCCceEEeeeeCCC
Q 004475 107 SSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSLDG-TAKDFGTPAVYTAVEPSPD 185 (751)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~G-~~~~lt~~~~~~~~~~SpD 185 (751)
+. ...||-..-+- +.+.++..+.++...|||+
T Consensus 259 da-----------------------------------------------vfrlw~e~q~wt~erw~lgsgrvqtacWspc 291 (445)
T KOG2139|consen 259 DA-----------------------------------------------VFRLWQENQSWTKERWILGSGRVQTACWSPC 291 (445)
T ss_pred cc-----------------------------------------------eeeeehhcccceecceeccCCceeeeeecCC
Confidence 21 12344222211 2223333368889999999
Q ss_pred CceEEEEEecCC
Q 004475 186 QKYVLITSMHRP 197 (751)
Q Consensus 186 G~~i~~~~~~~~ 197 (751)
|++|+|+....+
T Consensus 292 GsfLLf~~sgsp 303 (445)
T KOG2139|consen 292 GSFLLFACSGSP 303 (445)
T ss_pred CCEEEEEEcCCc
Confidence 999999877643
No 211
>PRK10115 protease 2; Provisional
Probab=98.78 E-value=6.4e-06 Score=92.78 Aligned_cols=260 Identities=13% Similarity=0.096 Sum_probs=145.3
Q ss_pred ccceeecCCCCeEEEEEeecccccccCCceeEEEEEcCCCC--eeeccCCCCccccceeeeeEEecCCcEEEEeecCCCC
Q 004475 33 INFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGE--AKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRR 110 (751)
Q Consensus 33 ~~~p~~SPDG~~iaf~~~~~~~~~~~~~~~~l~i~~~~~g~--~~~lt~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~ 110 (751)
+....|||||++|||... ..++...+|+++++++|+ ...+.... ..++|++||+.|+|+......
T Consensus 129 l~~~~~Spdg~~la~~~d-----~~G~E~~~l~v~d~~tg~~l~~~i~~~~--------~~~~w~~D~~~~~y~~~~~~~ 195 (686)
T PRK10115 129 LGGMAITPDNTIMALAED-----FLSRRQYGIRFRNLETGNWYPELLDNVE--------PSFVWANDSWTFYYVRKHPVT 195 (686)
T ss_pred EeEEEECCCCCEEEEEec-----CCCcEEEEEEEEECCCCCCCCccccCcc--------eEEEEeeCCCEEEEEEecCCC
Confidence 567889999999999864 233566899999999887 44442211 347999999999998653110
Q ss_pred CCCCCCCCCCCCceeeccccccccchhhhhccCCccchhhhhhheeeEEEEEcC-CC--CceecCCC--ceEE-eeeeCC
Q 004475 111 DPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DG--TAKDFGTP--AVYT-AVEPSP 184 (751)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~G--~~~~lt~~--~~~~-~~~~Sp 184 (751)
. +..+||+.++ ++ +.+.|... .... ....+.
T Consensus 196 ~-------------------------------------------~~~~v~~h~lgt~~~~d~lv~~e~~~~~~~~~~~s~ 232 (686)
T PRK10115 196 L-------------------------------------------LPYQVWRHTIGTPASQDELVYEEKDDTFYVSLHKTT 232 (686)
T ss_pred C-------------------------------------------CCCEEEEEECCCChhHCeEEEeeCCCCEEEEEEEcC
Confidence 0 1158999999 66 44555432 2222 344456
Q ss_pred CCceEEEEEecCCcccccccCCCceeEEEEeCC--CceeeeeccCCCCCCCCCccCCccCCCceeeeecCCCceEEEEEe
Q 004475 185 DQKYVLITSMHRPYSYKVPCARFSQKVQVWTTD--GKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEA 262 (751)
Q Consensus 185 DG~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~--~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~spdG~~~i~~~~~ 262 (751)
|++++++...... .+++++++.+ .+..+.+...+.. . .+.....+.. +++.+.
T Consensus 233 d~~~l~i~~~~~~----------~~~~~l~~~~~~~~~~~~~~~~~~~-------------~-~~~~~~~~~~-ly~~tn 287 (686)
T PRK10115 233 SKHYVVIHLASAT----------TSEVLLLDAELADAEPFVFLPRRKD-------------H-EYSLDHYQHR-FYLRSN 287 (686)
T ss_pred CCCEEEEEEECCc----------cccEEEEECcCCCCCceEEEECCCC-------------C-EEEEEeCCCE-EEEEEc
Confidence 9999987655432 3467777743 2222322222111 0 1122233344 444331
Q ss_pred ccCCCCccccCcccceeeccCCCCCCCCceEeEee-c-eeEE-EEEecCCceEEEeeeecccceeEEEecCCCCCCccee
Q 004475 263 QDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKL-D-LRFS-VSWCDDSLALVNETWYKTSQTRTWLVCPGSKDVAPRV 339 (751)
Q Consensus 263 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~-~-~~~~-~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~ 339 (751)
. ...+..|+.+++.. .+..+.+... . ..+. +.++ ++.|++.... .+...|++++..++ ..+.
T Consensus 288 ~--------~~~~~~l~~~~~~~--~~~~~~l~~~~~~~~i~~~~~~--~~~l~~~~~~-~g~~~l~~~~~~~~--~~~~ 352 (686)
T PRK10115 288 R--------HGKNFGLYRTRVRD--EQQWEELIPPRENIMLEGFTLF--TDWLVVEERQ-RGLTSLRQINRKTR--EVIG 352 (686)
T ss_pred C--------CCCCceEEEecCCC--cccCeEEECCCCCCEEEEEEEE--CCEEEEEEEe-CCEEEEEEEcCCCC--ceEE
Confidence 1 11234677777741 1344455544 2 3556 6776 5577766643 34567999987653 3333
Q ss_pred ee-ecccccccCCCCCCCeeeC--CCCCEEEEeeeecCCcceEEEEccCCCCCCCCCceeEEEecCCCceeEEeec
Q 004475 340 LF-DRVFENVYSDPGSPMMTRT--STGTNVIAKIKKENDEQIYILLNGRGFTPEGNIPFLDLFDINTGSKERIWES 412 (751)
Q Consensus 340 l~-~~~~~~~~~~~~~~~~~~s--pDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~ 412 (751)
+. ........ +.++ +++..+++.... ......++.+|+.+++.+.+...
T Consensus 353 l~~~~~~~~~~-------~~~~~~~~~~~~~~~~ss-----------------~~~P~~~y~~d~~~~~~~~l~~~ 404 (686)
T PRK10115 353 IAFDDPAYVTW-------IAYNPEPETSRLRYGYSS-----------------MTTPDTLFELDMDTGERRVLKQT 404 (686)
T ss_pred ecCCCCceEee-------ecccCCCCCceEEEEEec-----------------CCCCCEEEEEECCCCcEEEEEec
Confidence 33 11111000 1123 555555555421 23456899999988876666543
No 212
>PTZ00421 coronin; Provisional
Probab=98.77 E-value=2.2e-06 Score=92.02 Aligned_cols=202 Identities=11% Similarity=0.029 Sum_probs=116.7
Q ss_pred cccceeecC-CCCeEEEEEeecccccccCCceeEEEEEcCCCCe-----eeccCCCCccccceeeeeEEecCCc-EEEEe
Q 004475 32 KINFVSWSP-DGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEA-----KPLFESPDICLNAVFGSFVWVNNST-LLIFT 104 (751)
Q Consensus 32 ~~~~p~~SP-DG~~iaf~~~~~~~~~~~~~~~~l~i~~~~~g~~-----~~lt~~~~~~~~~~~~~~~wspDg~-~l~~~ 104 (751)
.+....||| |++.||..+ ....|.++++.++.. .++.....+ ...+..++|+|++. .|+..
T Consensus 77 ~V~~v~fsP~d~~~LaSgS----------~DgtIkIWdi~~~~~~~~~~~~l~~L~gH--~~~V~~l~f~P~~~~iLaSg 144 (493)
T PTZ00421 77 PIIDVAFNPFDPQKLFTAS----------EDGTIMGWGIPEEGLTQNISDPIVHLQGH--TKKVGIVSFHPSAMNVLASA 144 (493)
T ss_pred CEEEEEEcCCCCCEEEEEe----------CCCEEEEEecCCCccccccCcceEEecCC--CCcEEEEEeCcCCCCEEEEE
Confidence 578999999 888887753 335666667655421 111111111 11367889999874 55544
Q ss_pred ecCCCCCCCCCCCCCCCCceeeccccccccchhhhhccCCccchhhhhhheeeEEEEEcC-CCC-ceecCCC-ceEEeee
Q 004475 105 IPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DGT-AKDFGTP-AVYTAVE 181 (751)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~G~-~~~lt~~-~~~~~~~ 181 (751)
+.+ ..|.++|+ +++ ...+..+ ..+..++
T Consensus 145 s~D-------------------------------------------------gtVrIWDl~tg~~~~~l~~h~~~V~sla 175 (493)
T PTZ00421 145 GAD-------------------------------------------------MVVNVWDVERGKAVEVIKCHSDQITSLE 175 (493)
T ss_pred eCC-------------------------------------------------CEEEEEECCCCeEEEEEcCCCCceEEEE
Confidence 322 46778888 564 3444444 6788999
Q ss_pred eCCCCceEEEEEecCCcccccccCCCceeEEEEeCCCceee-eeccCCCCCCCCCccCCccCCCceeeeecCCCceEEEE
Q 004475 182 PSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVR-ELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWV 260 (751)
Q Consensus 182 ~SpDG~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~spdG~~~i~~~ 260 (751)
|+|||+.|+..+.+ ..|.+||+.+++.. .+..+... ....+.|++++.. |+.+
T Consensus 176 ~spdG~lLatgs~D-------------g~IrIwD~rsg~~v~tl~~H~~~------------~~~~~~w~~~~~~-ivt~ 229 (493)
T PTZ00421 176 WNLDGSLLCTTSKD-------------KKLNIIDPRDGTIVSSVEAHASA------------KSQRCLWAKRKDL-IITL 229 (493)
T ss_pred EECCCCEEEEecCC-------------CEEEEEECCCCcEEEEEecCCCC------------cceEEEEcCCCCe-EEEE
Confidence 99999988876543 36889999865432 22221111 0124689999887 4433
Q ss_pred EeccCCCCccccCcccceeeccCCCCCCCCceEeEe--eceeEE-EEEecCCceEEEeeeecccceeEEEecCCCC
Q 004475 261 EAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHK--LDLRFS-VSWCDDSLALVNETWYKTSQTRTWLVCPGSK 333 (751)
Q Consensus 261 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~--~~~~~~-~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~ 333 (751)
... ....+.|.++|+.. ...+..... ...... +.|++|++.|+.+.. +...|.++++..+
T Consensus 230 G~s--------~s~Dr~VklWDlr~--~~~p~~~~~~d~~~~~~~~~~d~d~~~L~lggk---gDg~Iriwdl~~~ 292 (493)
T PTZ00421 230 GCS--------KSQQRQIMLWDTRK--MASPYSTVDLDQSSALFIPFFDEDTNLLYIGSK---GEGNIRCFELMNE 292 (493)
T ss_pred ecC--------CCCCCeEEEEeCCC--CCCceeEeccCCCCceEEEEEcCCCCEEEEEEe---CCCeEEEEEeeCC
Confidence 211 11235788888741 112222211 122334 789999998776542 2245666666653
No 213
>PF07224 Chlorophyllase: Chlorophyllase; InterPro: IPR010821 This family consists of several chlorophyllase proteins (3.1.1.14 from EC). Chlorophyllase (Chlase) is the first enzyme involved in chlorophyll degradation and catalyses the hydrolysis of the ester bond to yield chlorophyllide and phytol [, , ].; GO: 0047746 chlorophyllase activity, 0015996 chlorophyll catabolic process
Probab=98.76 E-value=5.4e-08 Score=89.93 Aligned_cols=183 Identities=17% Similarity=0.179 Sum_probs=112.4
Q ss_pred eEEEEEEcCCCCCCCCCCCccEEEEEcCCCCcCcccCCcccCCCCccCCCCchHHHHHHhCCeEEEEcCCCCCCCCCCCC
Q 004475 493 PLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGPSIPIIGEGDKL 572 (751)
Q Consensus 493 ~i~~~~~~P~~~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~v~~~~~~~~~g~g~~~ 572 (751)
..+..++.|.. ++.+|+|+++||. .....++......+++.||+|++++.....+
T Consensus 32 PkpLlI~tP~~-----~G~yPVilF~HG~---------------~l~ns~Ys~lL~HIASHGfIVVAPQl~~~~~----- 86 (307)
T PF07224_consen 32 PKPLLIVTPSE-----AGTYPVILFLHGF---------------NLYNSFYSQLLAHIASHGFIVVAPQLYTLFP----- 86 (307)
T ss_pred CCCeEEecCCc-----CCCccEEEEeech---------------hhhhHHHHHHHHHHhhcCeEEEechhhcccC-----
Confidence 56777888876 6679999999994 1123334466778899999999965543222
Q ss_pred CCchhHHHHHHHHHHHHHHHHHc--------CCCCCCcEEEEEeChHHHHHHHHHHhCC--CceeEEEEccCCCCCCCCc
Q 004475 573 PNDRFVEQLVSSAEAAVEEVVRR--------GVADPSRIAVGGHSYGAFMTAHLLAHAP--HLFCCGIARSGSYNKTLTP 642 (751)
Q Consensus 573 ~~~~~~~~~~~d~~~~v~~l~~~--------~~id~~~i~l~G~S~GG~~a~~~a~~~p--~~~~~~v~~~~~~d~~~~~ 642 (751)
....+.++++.++++||.+. -..+..+++++|||.||..|..+|+.+. -.|.++|.+.|+.-.....
T Consensus 87 ---p~~~~Ei~~aa~V~~WL~~gL~~~Lp~~V~~nl~klal~GHSrGGktAFAlALg~a~~lkfsaLIGiDPV~G~~k~~ 163 (307)
T PF07224_consen 87 ---PDGQDEIKSAASVINWLPEGLQHVLPENVEANLSKLALSGHSRGGKTAFALALGYATSLKFSALIGIDPVAGTSKGK 163 (307)
T ss_pred ---CCchHHHHHHHHHHHHHHhhhhhhCCCCcccccceEEEeecCCccHHHHHHHhcccccCchhheecccccCCCCCCC
Confidence 12245678888999999763 1246679999999999999999998662 2477888777763211100
Q ss_pred cCcccccccchhhHHHHHhcCcccccCCCCCCEEEEEcCCC----CCC-CCCh--HHHHHHHHHHHhCCCcEEEEEeCCC
Q 004475 643 FGFQTEFRTLWEATNVYIEMSPITHANKIKKPILIIHGEVD----DKV-GLFP--MQAERFFDALKGHGALSRLVLLPFE 715 (751)
Q Consensus 643 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~li~~G~~D----~~v-p~~~--~~~~~~~~~l~~~~~~~~~~~~~~~ 715 (751)
... +. ...+.|. --++..|+++|-..-- ... ||.+ .+=++|+...+ .++...+-.+-
T Consensus 164 ---~t~-------P~-iLty~p~--SF~l~iPv~VIGtGLg~~~~~~~~~CaP~gvnH~eFf~eCk---~p~~hfV~~dY 227 (307)
T PF07224_consen 164 ---QTP-------PP-ILTYVPQ--SFDLDIPVLVIGTGLGPKRNPLFPPCAPDGVNHEEFFNECK---PPCAHFVAKDY 227 (307)
T ss_pred ---CCC-------CC-eeecCCc--ccccCCceEEEecCcCccccCCCCCCCCCCcCHHHHHHhhc---ccceeeeeccc
Confidence 000 00 0001111 1135689888765443 111 1212 23456776654 45566666777
Q ss_pred CCcC
Q 004475 716 HHVY 719 (751)
Q Consensus 716 ~H~~ 719 (751)
||.-
T Consensus 228 GHmD 231 (307)
T PF07224_consen 228 GHMD 231 (307)
T ss_pred cccc
Confidence 8853
No 214
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=98.76 E-value=5.1e-06 Score=78.04 Aligned_cols=249 Identities=11% Similarity=0.111 Sum_probs=151.2
Q ss_pred CCCcc-cccceeecCCCCeEEEEEeecccccccCCceeEEEEEcCCCC--eeeccCCCCccccceeeeeEEecCCcEEEE
Q 004475 27 YPDGA-KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGE--AKPLFESPDICLNAVFGSFVWVNNSTLLIF 103 (751)
Q Consensus 27 ~~~~~-~~~~p~~SPDG~~iaf~~~~~~~~~~~~~~~~l~i~~~~~g~--~~~lt~~~~~~~~~~~~~~~wspDg~~l~~ 103 (751)
+++.. .+....|+|||..+|-- ....+|+++++.+-. .-.+. +. .+.+..+.|++||..|+.
T Consensus 43 l~gh~geI~~~~F~P~gs~~aSg----------G~Dr~I~LWnv~gdceN~~~lk-gH----sgAVM~l~~~~d~s~i~S 107 (338)
T KOG0265|consen 43 LPGHKGEIYTIKFHPDGSCFASG----------GSDRAIVLWNVYGDCENFWVLK-GH----SGAVMELHGMRDGSHILS 107 (338)
T ss_pred cCCCcceEEEEEECCCCCeEeec----------CCcceEEEEeccccccceeeec-cc----cceeEeeeeccCCCEEEE
Confidence 44433 57889999999999884 445788888876533 22222 11 124778999999999987
Q ss_pred eecCCCCCCCCCCCCCCCCceeeccccccccchhhhhccCCccchhhhhhheeeEEEEEcC-CC-CceecCCC-ceEEee
Q 004475 104 TIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DG-TAKDFGTP-AVYTAV 180 (751)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~G-~~~~lt~~-~~~~~~ 180 (751)
.+.+ ..++.+|+ +| ..++...+ .-+..+
T Consensus 108 ~gtD-------------------------------------------------k~v~~wD~~tG~~~rk~k~h~~~vNs~ 138 (338)
T KOG0265|consen 108 CGTD-------------------------------------------------KTVRGWDAETGKRIRKHKGHTSFVNSL 138 (338)
T ss_pred ecCC-------------------------------------------------ceEEEEecccceeeehhccccceeeec
Confidence 7443 47888999 88 45555555 334455
Q ss_pred eeCCCCceEEEEEecCCcccccccCCCceeEEEEeCCCceeeeeccCCCCCCCCCccCCccCCCceeeeecCCCceEEEE
Q 004475 181 EPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWV 260 (751)
Q Consensus 181 ~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~spdG~~~i~~~ 260 (751)
..+.-|-.++-+..+ ..++.+||...++..++... ..++.++.|..++.. +...
T Consensus 139 ~p~rrg~~lv~Sgsd------------D~t~kl~D~R~k~~~~t~~~-------------kyqltAv~f~d~s~q-v~sg 192 (338)
T KOG0265|consen 139 DPSRRGPQLVCSGSD------------DGTLKLWDIRKKEAIKTFEN-------------KYQLTAVGFKDTSDQ-VISG 192 (338)
T ss_pred CccccCCeEEEecCC------------CceEEEEeecccchhhcccc-------------ceeEEEEEecccccc-eeec
Confidence 556666666665443 34688999987654433211 123457888888887 3331
Q ss_pred EeccCCCCccccCcccceeeccCCCCCCCCceEeEeeceeEE-EEEecCCceEEEeeeecccceeEEEecCCCCCCcc-e
Q 004475 261 EAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFS-VSWCDDSLALVNETWYKTSQTRTWLVCPGSKDVAP-R 338 (751)
Q Consensus 261 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~-~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~~~~-~ 338 (751)
- -.+.|-++|+- . ......+......+. ++.||+|..+.-.+.. ..-.+|-+.+--. +.+ .
T Consensus 193 g------------Idn~ikvWd~r-~-~d~~~~lsGh~DtIt~lsls~~gs~llsnsMd--~tvrvwd~rp~~p-~~R~v 255 (338)
T KOG0265|consen 193 G------------IDNDIKVWDLR-K-NDGLYTLSGHADTITGLSLSRYGSFLLSNSMD--NTVRVWDVRPFAP-SQRCV 255 (338)
T ss_pred c------------ccCceeeeccc-c-CcceEEeecccCceeeEEeccCCCcccccccc--ceEEEEEecccCC-CCceE
Confidence 1 12456666662 1 123444455555666 8899999988654432 2345666655443 222 3
Q ss_pred eeeecccccccCCCCCCCeeeCCCCCEEEEeeeecCCcceEEEEccCCCCCCCCCceeEEEecCCCc
Q 004475 339 VLFDRVFENVYSDPGSPMMTRTSTGTNVIAKIKKENDEQIYILLNGRGFTPEGNIPFLDLFDINTGS 405 (751)
Q Consensus 339 ~l~~~~~~~~~~~~~~~~~~~spDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~ 405 (751)
.+............- .-+|||+++.+.+.+.+ ..+|+||..+..
T Consensus 256 ~if~g~~hnfeknlL--~cswsp~~~~i~ags~d---------------------r~vyvwd~~~r~ 299 (338)
T KOG0265|consen 256 KIFQGHIHNFEKNLL--KCSWSPNGTKITAGSAD---------------------RFVYVWDTTSRR 299 (338)
T ss_pred EEeecchhhhhhhcc--eeeccCCCCcccccccc---------------------ceEEEeeccccc
Confidence 344333322111000 15699999999888844 388999987643
No 215
>PRK13616 lipoprotein LpqB; Provisional
Probab=98.76 E-value=3.1e-07 Score=100.28 Aligned_cols=171 Identities=13% Similarity=0.067 Sum_probs=107.1
Q ss_pred eeeeEEecCCcEEEEeecCCCCCCCCCCCCCCCCceeeccccccccchhhhhccCCccchhhhhhheeeEEEEEcCCCCc
Q 004475 89 FGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSLDGTA 168 (751)
Q Consensus 89 ~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~G~~ 168 (751)
+..++.||||+.++|......... ...++||+++..|+.
T Consensus 352 vsspaiSpdG~~vA~v~~~~~~~~-----------------------------------------d~~s~Lwv~~~gg~~ 390 (591)
T PRK13616 352 ITSAALSRSGRQVAAVVTLGRGAP-----------------------------------------DPASSLWVGPLGGVA 390 (591)
T ss_pred cccceECCCCCEEEEEEeecCCCC-----------------------------------------CcceEEEEEeCCCcc
Confidence 568899999999999953211100 022699999987777
Q ss_pred eecCCCceEEeeeeCCCCceEEEEEecCCcccccccCCCceeEEEEeCCCceeeeeccCCCCCCCCCccCCccCCCceee
Q 004475 169 KDFGTPAVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSIS 248 (751)
Q Consensus 169 ~~lt~~~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 248 (751)
++++.......+.|||||+.|+|.+..+...+.. ......++++.++++++.++ .. ...+..+.
T Consensus 391 ~~lt~g~~~t~PsWspDG~~lw~v~dg~~~~~v~-~~~~~gql~~~~vd~ge~~~--~~-------------~g~Issl~ 454 (591)
T PRK13616 391 VQVLEGHSLTRPSWSLDADAVWVVVDGNTVVRVI-RDPATGQLARTPVDASAVAS--RV-------------PGPISELQ 454 (591)
T ss_pred eeeecCCCCCCceECCCCCceEEEecCcceEEEe-ccCCCceEEEEeccCchhhh--cc-------------CCCcCeEE
Confidence 8888775588999999999999986542211100 11113567777777665543 11 12356899
Q ss_pred eecCCCceEEEEEeccCCCCccccCcccceeeccCCCCCCCCc-----eEeEeecee-EE-EEEecCCceEEEeeeeccc
Q 004475 249 WRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKP-----EILHKLDLR-FS-VSWCDDSLALVNETWYKTS 321 (751)
Q Consensus 249 ~spdG~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~-----~~l~~~~~~-~~-~~~spdg~~l~~~~~~~~~ 321 (751)
|||||++ |+++. .++|++-.+...+++.. ..+...... .. +.|..|+.. +..+. ..
T Consensus 455 wSpDG~R-iA~i~-------------~g~v~Va~Vvr~~~G~~~l~~~~~l~~~l~~~~~~l~W~~~~~L-~V~~~--~~ 517 (591)
T PRK13616 455 LSRDGVR-AAMII-------------GGKVYLAVVEQTEDGQYALTNPREVGPGLGDTAVSLDWRTGDSL-VVGRS--DP 517 (591)
T ss_pred ECCCCCE-EEEEE-------------CCEEEEEEEEeCCCCceeecccEEeecccCCccccceEecCCEE-EEEec--CC
Confidence 9999999 66654 14677722211113332 224433333 35 899999994 44432 34
Q ss_pred ceeEEEecCCCC
Q 004475 322 QTRTWLVCPGSK 333 (751)
Q Consensus 322 ~~~l~~~~~~~~ 333 (751)
...+|.+++++.
T Consensus 518 ~~~v~~v~vDG~ 529 (591)
T PRK13616 518 EHPVWYVNLDGS 529 (591)
T ss_pred CCceEEEecCCc
Confidence 467999999985
No 216
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=98.75 E-value=6.7e-06 Score=82.83 Aligned_cols=294 Identities=11% Similarity=0.066 Sum_probs=162.0
Q ss_pred cccceeecCCCCeEEEEEeecc---c--ccccCCceeEEEEEcCCCCeeeccCCCCccccceeeeeEEecCCcEEEEeec
Q 004475 32 KINFVSWSPDGKRIAFSVRVDE---E--DNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIP 106 (751)
Q Consensus 32 ~~~~p~~SPDG~~iaf~~~~~~---~--~~~~~~~~~l~i~~~~~g~~~~lt~~~~~~~~~~~~~~~wspDg~~l~~~~~ 106 (751)
.+....|||.|++|..-++.+. + ........+++++|.++|....-....... ..+...+.||-|.+++|....
T Consensus 73 ~V~~~~fSP~~kYL~tw~~~pi~~pe~e~sp~~~~n~~~vwd~~sg~iv~sf~~~~q~-~~~Wp~~k~s~~D~y~ARvv~ 151 (561)
T COG5354 73 DVKYLDFSPNEKYLVTWSREPIIEPEIEISPFTSKNNVFVWDIASGMIVFSFNGISQP-YLGWPVLKFSIDDKYVARVVG 151 (561)
T ss_pred CceecccCcccceeeeeccCCccChhhccCCccccCceeEEeccCceeEeeccccCCc-ccccceeeeeecchhhhhhcc
Confidence 4678889999999988776322 1 122234458999999888755443322211 001225688888888776521
Q ss_pred CCCCCCCCCCCCCCCCceeeccccccccchhhhhccCCccchhhhhhheeeEEEEEcCCCCceecCC----CceEEeeee
Q 004475 107 SSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSLDGTAKDFGT----PAVYTAVEP 182 (751)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~G~~~~lt~----~~~~~~~~~ 182 (751)
..|++.++++...++.- ..++.++.|
T Consensus 152 --------------------------------------------------~sl~i~e~t~n~~~~p~~~lr~~gi~dFsi 181 (561)
T COG5354 152 --------------------------------------------------SSLYIHEITDNIEEHPFKNLRPVGILDFSI 181 (561)
T ss_pred --------------------------------------------------CeEEEEecCCccccCchhhccccceeeEEe
Confidence 46777777553333221 267889999
Q ss_pred CCCC--ceEEEEEecCCcccccccCCCceeEEEEeCCCce-ee--eeccCCCCCCCCCccCCccCCCceeeeecCCCceE
Q 004475 183 SPDQ--KYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKL-VR--ELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTL 257 (751)
Q Consensus 183 SpDG--~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~-~~--~l~~~~~~~~~~~~~~~~~~~~~~~~~spdG~~~i 257 (751)
||-| ..|+|...... .-+..+.++.+..+. +. .+.... --.+.|.+.|++++
T Consensus 182 sP~~n~~~la~~tPEk~--------~kpa~~~i~sIp~~s~l~tk~lfk~~---------------~~qLkW~~~g~~ll 238 (561)
T COG5354 182 SPEGNHDELAYWTPEKL--------NKPAMVRILSIPKNSVLVTKNLFKVS---------------GVQLKWQVLGKYLL 238 (561)
T ss_pred cCCCCCceEEEEccccC--------CCCcEEEEEEccCCCeeeeeeeEeec---------------ccEEEEecCCceEE
Confidence 9975 44566543321 113345555554221 11 111111 12689999999966
Q ss_pred EEEEeccCCCCccccCcccceeeccCCCCCCCCceEeEeeceeEE-EEEecCCceEEEeeeecccceeEEEecCCCCCCc
Q 004475 258 YWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFS-VSWCDDSLALVNETWYKTSQTRTWLVCPGSKDVA 336 (751)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~-~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~~~ 336 (751)
+.+...- .....--....||++++. +..........+.+. +.|.|+++.++..+...+ ..+-..++.+.
T Consensus 239 ~l~~t~~--ksnKsyfgesnLyl~~~~---e~~i~V~~~~~~pVhdf~W~p~S~~F~vi~g~~p--a~~s~~~lr~N--- 308 (561)
T COG5354 239 VLVMTHT--KSNKSYFGESNLYLLRIT---ERSIPVEKDLKDPVHDFTWEPLSSRFAVISGYMP--ASVSVFDLRGN--- 308 (561)
T ss_pred EEEEEee--ecccceeccceEEEEeec---ccccceeccccccceeeeecccCCceeEEecccc--cceeecccccc---
Confidence 5544221 000011122589999985 333333224456667 999999999887773322 23444555552
Q ss_pred ceeee-ecccccccCCCCCCCeeeCCCCCEEEEeeeecCCcceEEEEccCCCCCCCCCceeEEEecCCCceeEEeeccch
Q 004475 337 PRVLF-DRVFENVYSDPGSPMMTRTSTGTNVIAKIKKENDEQIYILLNGRGFTPEGNIPFLDLFDINTGSKERIWESNRE 415 (751)
Q Consensus 337 ~~~l~-~~~~~~~~~~~~~~~~~~spDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~ 415 (751)
.+-.. ....+. +.|||.++++++...+. .+..+-.||..+. ...+..-.
T Consensus 309 l~~~~Pe~~rNT---------~~fsp~~r~il~agF~n------------------l~gni~i~~~~~r-f~~~~~~~-- 358 (561)
T COG5354 309 LRFYFPEQKRNT---------IFFSPHERYILFAGFDN------------------LQGNIEIFDPAGR-FKVAGAFN-- 358 (561)
T ss_pred eEEecCCccccc---------ccccCcccEEEEecCCc------------------cccceEEeccCCc-eEEEEEee--
Confidence 12211 111111 66999999999987442 2224555566532 22221111
Q ss_pred hhhhceeeeecCCcceeeccCCCEEEEEEecCC
Q 004475 416 KYFETAVALVFGQGEEDINLNQLKILTSKESKT 448 (751)
Q Consensus 416 ~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~ 448 (751)
......+.|||||+.+.....+..
T Consensus 359 ---------~~n~s~~~wspd~qF~~~~~ts~k 382 (561)
T COG5354 359 ---------GLNTSYCDWSPDGQFYDTDTTSEK 382 (561)
T ss_pred ---------cCCceEeeccCCceEEEecCCCcc
Confidence 111234789999998777665543
No 217
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=98.75 E-value=5.6e-06 Score=84.07 Aligned_cols=303 Identities=13% Similarity=0.105 Sum_probs=158.1
Q ss_pred cccceeecCCCCeEEEEEeecc-cccccCCceeEEEEEcCCCCeeeccCCCCccccceeeeeEEecCCcEEEEeecCCCC
Q 004475 32 KINFVSWSPDGKRIAFSVRVDE-EDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRR 110 (751)
Q Consensus 32 ~~~~p~~SPDG~~iaf~~~~~~-~~~~~~~~~~l~i~~~~~g~~~~lt~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~ 110 (751)
.+....|||.-++|+..+.... ...+...+.+|.|+|+.+|..++-....... .....-+.||-|++++|-...+.
T Consensus 251 ~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~tG~lkrsF~~~~~~-~~~WP~frWS~DdKy~Arm~~~s-- 327 (698)
T KOG2314|consen 251 GVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDIATGLLKRSFPVIKSP-YLKWPIFRWSHDDKYFARMTGNS-- 327 (698)
T ss_pred CceeeecCCccceEEEecCCccccCcccCCCceEEEEEccccchhcceeccCCC-ccccceEEeccCCceeEEeccce--
Confidence 4777888888888877664211 0111145679999999999876654332111 11123569999999988662210
Q ss_pred CCCCCCCCCCCCceeeccccccccchhhhhccCCccchhhhhhheeeEEEEEcCCCCceecCCCceEEeeeeCCCCceEE
Q 004475 111 DPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSLDGTAKDFGTPAVYTAVEPSPDQKYVL 190 (751)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~G~~~~lt~~~~~~~~~~SpDG~~i~ 190 (751)
+.+++ ...+.+++ ++...+ .++.++.|||-+..|+
T Consensus 328 -------------isIyE---------------------------tpsf~lld--~Kslki---~gIr~FswsP~~~llA 362 (698)
T KOG2314|consen 328 -------------ISIYE---------------------------TPSFMLLD--KKSLKI---SGIRDFSWSPTSNLLA 362 (698)
T ss_pred -------------EEEEe---------------------------cCceeeec--ccccCC---ccccCcccCCCcceEE
Confidence 00000 01222222 222222 5788999999999999
Q ss_pred EEEecCCcccccccCCCceeEEEEeCCCceeeeeccCCCCCCCCCccCCccCCC--ceeeeecCCCceEEEEEeccCCCC
Q 004475 191 ITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGM--RSISWRADKPSTLYWVEAQDRGDA 268 (751)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~--~~~~~spdG~~~i~~~~~~~~~~~ 268 (751)
|-...... .+..+-+..+-+++..+..+. .++ -.+.|-.+|.+|-+.+.......
T Consensus 363 Ywtpe~~~--------~parvtL~evPs~~~iRt~nl--------------fnVsDckLhWQk~gdyLcvkvdR~tK~~- 419 (698)
T KOG2314|consen 363 YWTPETNN--------IPARVTLMEVPSKREIRTKNL--------------FNVSDCKLHWQKSGDYLCVKVDRHTKSK- 419 (698)
T ss_pred EEcccccC--------CcceEEEEecCccceeeeccc--------------eeeeccEEEeccCCcEEEEEEEeecccc-
Confidence 97644211 123334444433322111000 011 15799999999444443221111
Q ss_pred ccccCcccceeeccCCCCCCCCceEeEeeceeEE-EEEecCCceEEEeeeecc-cceeEEEecCCCCCCcceeeeecccc
Q 004475 269 NVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFS-VSWCDDSLALVNETWYKT-SQTRTWLVCPGSKDVAPRVLFDRVFE 346 (751)
Q Consensus 269 ~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~-~~~spdg~~l~~~~~~~~-~~~~l~~~~~~~~~~~~~~l~~~~~~ 346 (751)
....-..-+|+.+.-. ..+.........+- ++|-|.|..++..+.... ..-..|.+.... ..+..+......
T Consensus 420 ~~g~f~n~eIfrireK----dIpve~velke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~--~~~~lVk~~dk~ 493 (698)
T KOG2314|consen 420 VKGQFSNLEIFRIREK----DIPVEVVELKESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNI--KKPSLVKELDKK 493 (698)
T ss_pred ccceEeeEEEEEeecc----CCCceeeecchheeeeeeccCCCeEEEEEccccccceeEEEeecCC--Cchhhhhhhccc
Confidence 0000011245555432 23333334444444 899999999987764322 334566666544 233333222222
Q ss_pred cccCCCCCCCeeeCCCCCEEEEeeeecCCcceEEEEccCCCCCCCCCceeEEEecCCCceeEEeeccchhhhhceeeeec
Q 004475 347 NVYSDPGSPMMTRTSTGTNVIAKIKKENDEQIYILLNGRGFTPEGNIPFLDLFDINTGSKERIWESNREKYFETAVALVF 426 (751)
Q Consensus 347 ~~~~~~~~~~~~~spDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~ 426 (751)
.+.. +.|||-|++++.+...+ .+..|.-+|.+-...+.+-..+ + .
T Consensus 494 ~~N~------vfwsPkG~fvvva~l~s------------------~~g~l~F~D~~~a~~k~~~~~e------h-----~ 538 (698)
T KOG2314|consen 494 FANT------VFWSPKGRFVVVAALVS------------------RRGDLEFYDTDYADLKDTASPE------H-----F 538 (698)
T ss_pred ccce------EEEcCCCcEEEEEEecc------------------cccceEEEecchhhhhhccCcc------c-----c
Confidence 2222 77999999999988542 3335666676532333222211 1 1
Q ss_pred CCcceeeccCCCEEEEEEec
Q 004475 427 GQGEEDINLNQLKILTSKES 446 (751)
Q Consensus 427 ~~~~~~~s~dg~~l~~~~~~ 446 (751)
....+.|.|.|++++-..+.
T Consensus 539 ~at~veWDPtGRYvvT~ss~ 558 (698)
T KOG2314|consen 539 AATEVEWDPTGRYVVTSSSS 558 (698)
T ss_pred ccccceECCCCCEEEEeeeh
Confidence 12335799999877655433
No 218
>TIGR01839 PHA_synth_II poly(R)-hydroxyalkanoic acid synthase, class II. This model represents the class II subfamily of poly(R)-hydroxyalkanoate synthases, which polymerizes hydroxyacyl-CoAs, typically with six to fourteen carbons in the hydroxyacyl backbone into aliphatic esters termed poly(R)-hydroxyalkanoic acids. These polymers accumulate as carbon and energy storage inclusions in many species and can amount to 90 percent of the dry weight of cell.
Probab=98.75 E-value=3.8e-07 Score=96.45 Aligned_cols=162 Identities=15% Similarity=0.069 Sum_probs=105.4
Q ss_pred hHHHHHHhCCeEEEEcCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHH----HHH
Q 004475 545 TSSLIFLARRFAVLAGPSIPIIGEGDKLPNDRFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAH----LLA 620 (751)
Q Consensus 545 ~~~~~~~~~G~~v~~~~~~~~~g~g~~~~~~~~~~~~~~d~~~~v~~l~~~~~id~~~i~l~G~S~GG~~a~~----~a~ 620 (751)
.+..+|+++||.|+.++.. ..+ .... ....++.++.+.++++.+++.. ...+|.++|+|+||.+++. +++
T Consensus 238 SlVr~lv~qG~~VflIsW~-nP~--~~~r-~~~ldDYv~~i~~Ald~V~~~t--G~~~vnl~GyC~GGtl~a~~~a~~aA 311 (560)
T TIGR01839 238 SFVQYCLKNQLQVFIISWR-NPD--KAHR-EWGLSTYVDALKEAVDAVRAIT--GSRDLNLLGACAGGLTCAALVGHLQA 311 (560)
T ss_pred hHHHHHHHcCCeEEEEeCC-CCC--hhhc-CCCHHHHHHHHHHHHHHHHHhc--CCCCeeEEEECcchHHHHHHHHHHHh
Confidence 5677899999999995552 222 1211 1223555567888899888764 3468999999999999997 677
Q ss_pred hCCC-ceeEEEEccCCCCCCCCc-cC-ccc------------------------------ccc-----------------
Q 004475 621 HAPH-LFCCGIARSGSYNKTLTP-FG-FQT------------------------------EFR----------------- 650 (751)
Q Consensus 621 ~~p~-~~~~~v~~~~~~d~~~~~-~~-~~~------------------------------~~~----------------- 650 (751)
++++ +++.++++....|..... .. +.. ...
T Consensus 312 ~~~~~~V~sltllatplDf~~~g~l~~f~~e~~~~~~e~~~~~~G~lpg~~ma~~F~~LrP~dliw~y~v~~yllg~~p~ 391 (560)
T TIGR01839 312 LGQLRKVNSLTYLVSLLDSTMESPAALFADEQTLEAAKRRSYQAGVLDGSEMAKVFAWMRPNDLIWNYWVNNYLLGNEPP 391 (560)
T ss_pred cCCCCceeeEEeeecccccCCCCcchhccChHHHHHHHHHHHhcCCcCHHHHHHHHHhcCchhhhHHHHHHHhhcCCCcc
Confidence 7775 799999888877743210 00 000 000
Q ss_pred ----cchhh-------------HHHHHhcCccc-----------ccCCCCCCEEEEEcCCCCCCCCChHHHHHHHHHHHh
Q 004475 651 ----TLWEA-------------TNVYIEMSPIT-----------HANKIKKPILIIHGEVDDKVGLFPMQAERFFDALKG 702 (751)
Q Consensus 651 ----~~~~~-------------~~~~~~~~~~~-----------~~~~~~~P~li~~G~~D~~vp~~~~~~~~~~~~l~~ 702 (751)
..|.. .+.|.++...+ .+.+|++|+|++.|+.|.++| +..+..+.+.+.
T Consensus 392 ~fdll~Wn~D~t~lPg~~~~e~l~ly~~N~L~~pG~l~v~G~~idL~~I~~Pvl~va~~~DHIvP--w~s~~~~~~l~g- 468 (560)
T TIGR01839 392 AFDILYWNNDTTRLPAAFHGDLLDMFKSNPLTRPDALEVCGTPIDLKKVKCDSFSVAGTNDHITP--WDAVYRSALLLG- 468 (560)
T ss_pred hhhHHHHhCcCccchHHHHHHHHHHHhcCCCCCCCCEEECCEEechhcCCCCeEEEecCcCCcCC--HHHHHHHHHHcC-
Confidence 00100 01222222221 356789999999999999999 898888877663
Q ss_pred CCCcEEEEEeCCCCCc
Q 004475 703 HGALSRLVLLPFEHHV 718 (751)
Q Consensus 703 ~~~~~~~~~~~~~~H~ 718 (751)
.++++++.++ ||.
T Consensus 469 --s~~~fvl~~g-GHI 481 (560)
T TIGR01839 469 --GKRRFVLSNS-GHI 481 (560)
T ss_pred --CCeEEEecCC-Ccc
Confidence 3578888865 684
No 219
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=98.74 E-value=2.4e-07 Score=87.16 Aligned_cols=250 Identities=13% Similarity=0.165 Sum_probs=138.9
Q ss_pred cccceeecCCCCeEEEEEeecccccccCCceeEEEEEcCCCCeeeccCCCC----ccccceeeeeEEecCCcEEEEeecC
Q 004475 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPD----ICLNAVFGSFVWVNNSTLLIFTIPS 107 (751)
Q Consensus 32 ~~~~p~~SPDG~~iaf~~~~~~~~~~~~~~~~l~i~~~~~g~~~~lt~~~~----~~~~~~~~~~~wspDg~~l~~~~~~ 107 (751)
.+..++|||||++|+.-+. ++--.+| +--+|+.+.=..... .-+...+....||.|++.|+..+.+
T Consensus 215 h~EcA~FSPDgqyLvsgSv--------DGFiEVW--ny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqD 284 (508)
T KOG0275|consen 215 HVECARFSPDGQYLVSGSV--------DGFIEVW--NYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQD 284 (508)
T ss_pred chhheeeCCCCceEeeccc--------cceeeee--hhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccCcC
Confidence 4567899999999988432 4444555 444676543221111 1112235567899999988866432
Q ss_pred CCCCCCCCCCCCCCCceeeccccccccchhhhhccCCccchhhhhhheeeEEEEEcC-CC-CceecCC-C-ceEEeeeeC
Q 004475 108 SRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DG-TAKDFGT-P-AVYTAVEPS 183 (751)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~G-~~~~lt~-~-~~~~~~~~S 183 (751)
+.|.++.+ +| -.+++.. + .++..+.||
T Consensus 285 -------------------------------------------------GkIKvWri~tG~ClRrFdrAHtkGvt~l~FS 315 (508)
T KOG0275|consen 285 -------------------------------------------------GKIKVWRIETGQCLRRFDRAHTKGVTCLSFS 315 (508)
T ss_pred -------------------------------------------------CcEEEEEEecchHHHHhhhhhccCeeEEEEc
Confidence 34555555 67 4455542 2 788899999
Q ss_pred CCCceEEEEEecCCcccccccCCCceeEEEEeCCCce-eeeeccCCCCCCCCCccCCccCCCceeeeecCCCceEEEEEe
Q 004475 184 PDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKL-VRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEA 262 (751)
Q Consensus 184 pDG~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~-~~~l~~~~~~~~~~~~~~~~~~~~~~~~~spdG~~~i~~~~~ 262 (751)
.|+.+|+-.+.+ ..+.+.-+..++ ++.. ......+.+..|++||.+ |+-++
T Consensus 316 rD~SqiLS~sfD-------------~tvRiHGlKSGK~LKEf-------------rGHsSyvn~a~ft~dG~~-iisaS- 367 (508)
T KOG0275|consen 316 RDNSQILSASFD-------------QTVRIHGLKSGKCLKEF-------------RGHSSYVNEATFTDDGHH-IISAS- 367 (508)
T ss_pred cCcchhhccccc-------------ceEEEeccccchhHHHh-------------cCccccccceEEcCCCCe-EEEec-
Confidence 999999876543 234444444332 2211 222234557799999999 65554
Q ss_pred ccCCCCccccCcccceeeccCCCCCCCCceEe--EeeceeEE-EEEecCCceEEEeeeecccceeEEEecCCCCCCccee
Q 004475 263 QDRGDANVEVSPRDIIYTQPAEPAEGEKPEIL--HKLDLRFS-VSWCDDSLALVNETWYKTSQTRTWLVCPGSKDVAPRV 339 (751)
Q Consensus 263 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l--~~~~~~~~-~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~ 339 (751)
..+.+.+|+.+. +...... ...+..+. +..-|-+---.... +..+.+|++++.+. -.+.
T Consensus 368 -----------sDgtvkvW~~Kt--teC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVC---Nrsntv~imn~qGQ--vVrs 429 (508)
T KOG0275|consen 368 -----------SDGTVKVWHGKT--TECLSTFKPLGTDYPVNSVILLPKNPEHFIVC---NRSNTVYIMNMQGQ--VVRS 429 (508)
T ss_pred -----------CCccEEEecCcc--hhhhhhccCCCCcccceeEEEcCCCCceEEEE---cCCCeEEEEeccce--EEee
Confidence 224566666531 1111111 11222333 33334332211222 23468999999883 2222
Q ss_pred eeecccccccCCCCCCC-eeeCCCCCEEEEeeeecCCcceEEEEccCCCCCCCCCceeEEEecCCCceeEEeec
Q 004475 340 LFDRVFENVYSDPGSPM-MTRTSTGTNVIAKIKKENDEQIYILLNGRGFTPEGNIPFLDLFDINTGSKERIWES 412 (751)
Q Consensus 340 l~~~~~~~~~~~~~~~~-~~~spDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~ 412 (751)
...+.... +.+. -..||-|.|++....+ ..||-+...+|+..+....
T Consensus 430 fsSGkREg-----GdFi~~~lSpkGewiYcigED---------------------~vlYCF~~~sG~LE~tl~V 477 (508)
T KOG0275|consen 430 FSSGKREG-----GDFINAILSPKGEWIYCIGED---------------------GVLYCFSVLSGKLERTLPV 477 (508)
T ss_pred eccCCccC-----CceEEEEecCCCcEEEEEccC---------------------cEEEEEEeecCceeeeeec
Confidence 22222111 1111 4479999999888743 2788888888887655443
No 220
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=98.73 E-value=7.5e-07 Score=86.88 Aligned_cols=131 Identities=20% Similarity=0.267 Sum_probs=82.6
Q ss_pred ceeEEeecCCCCCCC---CcccccCCCCcc-cccceeecCCCCeEEEEEeecccccccCCceeEEEEE------cCC---
Q 004475 5 TGIGIHRLLPDDSLG---PEKEVHGYPDGA-KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIAD------AET--- 71 (751)
Q Consensus 5 ~~~~~~~~~~~~~~g---~~~~l~~~~~~~-~~~~p~~SPDG~~iaf~~~~~~~~~~~~~~~~l~i~~------~~~--- 71 (751)
.+|.+|-+..+..+| +...+..|..+. .+.-.+|||+|..+|-... ++..-||... .++
T Consensus 36 ~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D--------~g~v~lWk~~~~~~~~~d~e~~ 107 (434)
T KOG1009|consen 36 KDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGD--------GGEVFLWKQGDVRIFDADTEAD 107 (434)
T ss_pred cceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeeecCC--------CceEEEEEecCcCCccccchhh
Confidence 456666665544555 444555555543 6788999999999998431 3445555444 112
Q ss_pred --CC---eeeccCCCCccccceeeeeEEecCCcEEEEeecCCCCCCCCCCCCCCCCceeeccccccccchhhhhccCCcc
Q 004475 72 --GE---AKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEY 146 (751)
Q Consensus 72 --g~---~~~lt~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (751)
.+ .+....+. ...+-.++|+||+..+.+.+.+
T Consensus 108 ~~ke~w~v~k~lr~h----~~diydL~Ws~d~~~l~s~s~d--------------------------------------- 144 (434)
T KOG1009|consen 108 LNKEKWVVKKVLRGH----RDDIYDLAWSPDSNFLVSGSVD--------------------------------------- 144 (434)
T ss_pred hCccceEEEEEeccc----ccchhhhhccCCCceeeeeecc---------------------------------------
Confidence 00 00000000 0124467999999999988543
Q ss_pred chhhhhhheeeEEEEEcC-CCCceecCCC--ceEEeeeeCCCCceEEEEEecC
Q 004475 147 DESLFDYYTTAQLVLGSL-DGTAKDFGTP--AVYTAVEPSPDQKYVLITSMHR 196 (751)
Q Consensus 147 ~~~~~~~~~~~~l~~~~~-~G~~~~lt~~--~~~~~~~~SpDG~~i~~~~~~~ 196 (751)
..++++|+ .|+...+.+. ..++.++|.|-+++|+..+.++
T Consensus 145 ----------ns~~l~Dv~~G~l~~~~~dh~~yvqgvawDpl~qyv~s~s~dr 187 (434)
T KOG1009|consen 145 ----------NSVRLWDVHAGQLLAILDDHEHYVQGVAWDPLNQYVASKSSDR 187 (434)
T ss_pred ----------ceEEEEEeccceeEeeccccccccceeecchhhhhhhhhccCc
Confidence 46778888 7865555444 6678999999999999887665
No 221
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.73 E-value=4.7e-06 Score=86.51 Aligned_cols=266 Identities=12% Similarity=0.142 Sum_probs=159.5
Q ss_pred ccceeecCCCCeEEEEEeecccccccCCceeEEEEEcCCCCeeeccCCCCccccceeeeeEEecCCcEEEEeecCCCCCC
Q 004475 33 INFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRDP 112 (751)
Q Consensus 33 ~~~p~~SPDG~~iaf~~~~~~~~~~~~~~~~l~i~~~~~g~~~~lt~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~ 112 (751)
.....||.. ..||. .....||+++..+|+..+|...... .+..+.|+++|+.|+.....
T Consensus 180 ~nlldWss~-n~laV-----------alg~~vylW~~~s~~v~~l~~~~~~----~vtSv~ws~~G~~LavG~~~----- 238 (484)
T KOG0305|consen 180 LNLLDWSSA-NVLAV-----------ALGQSVYLWSASSGSVTELCSFGEE----LVTSVKWSPDGSHLAVGTSD----- 238 (484)
T ss_pred hhHhhcccC-CeEEE-----------EecceEEEEecCCCceEEeEecCCC----ceEEEEECCCCCEEEEeecC-----
Confidence 345678843 35666 3447999999999999998766421 47899999999999988432
Q ss_pred CCCCCCCCCCceeeccccccccchhhhhccCCccchhhhhhheeeEEEEEcC-CC-CceecCC-C-ceEEeeeeCCCCce
Q 004475 113 PKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DG-TAKDFGT-P-AVYTAVEPSPDQKY 188 (751)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~G-~~~~lt~-~-~~~~~~~~SpDG~~ 188 (751)
+.+.++|. +- .++.+.. + ..+..++|. +.
T Consensus 239 --------------------------------------------g~v~iwD~~~~k~~~~~~~~h~~rvg~laW~--~~- 271 (484)
T KOG0305|consen 239 --------------------------------------------GTVQIWDVKEQKKTRTLRGSHASRVGSLAWN--SS- 271 (484)
T ss_pred --------------------------------------------CeEEEEehhhccccccccCCcCceeEEEecc--Cc-
Confidence 46777777 33 5555655 4 778899998 32
Q ss_pred EEEEEecCCcccccccCCCceeEEEEeCCCceeeeeccCCCCCCCCCccCCccCCCceeeeecCCCceEEEEEeccCCCC
Q 004475 189 VLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDA 268 (751)
Q Consensus 189 i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~spdG~~~i~~~~~~~~~~~ 268 (751)
++..... ...|..+|+...+...-+ +......+-.+.|++||++ ++-
T Consensus 272 ~lssGsr------------~~~I~~~dvR~~~~~~~~-----------~~~H~qeVCgLkws~d~~~-lAS--------- 318 (484)
T KOG0305|consen 272 VLSSGSR------------DGKILNHDVRISQHVVST-----------LQGHRQEVCGLKWSPDGNQ-LAS--------- 318 (484)
T ss_pred eEEEecC------------CCcEEEEEEecchhhhhh-----------hhcccceeeeeEECCCCCe-ecc---------
Confidence 2222111 234556665533211000 1122234557899999987 222
Q ss_pred ccccCcccceeeccCCCCCCCCceEeEeeceeEE-EEEecCCceEEEeeeecccceeEEEecCCCCCCcceeeeeccccc
Q 004475 269 NVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFS-VSWCDDSLALVNETWYKTSQTRTWLVCPGSKDVAPRVLFDRVFEN 347 (751)
Q Consensus 269 ~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~-~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~ 347 (751)
-...+.++++|.. .......+.++.+.+- ++|+|=..-|+.+... .....|...+..++ ......+...+
T Consensus 319 ---GgnDN~~~Iwd~~--~~~p~~~~~~H~aAVKA~awcP~q~~lLAsGGG-s~D~~i~fwn~~~g--~~i~~vdtgsQ- 389 (484)
T KOG0305|consen 319 ---GGNDNVVFIWDGL--SPEPKFTFTEHTAAVKALAWCPWQSGLLATGGG-SADRCIKFWNTNTG--ARIDSVDTGSQ- 389 (484)
T ss_pred ---CCCccceEeccCC--CccccEEEeccceeeeEeeeCCCccCceEEcCC-CcccEEEEEEcCCC--cEecccccCCc-
Confidence 1133578888873 1234566677777887 9999987776554422 33456777777664 22222222222
Q ss_pred ccCCCCCCCeeeCCCCCEEEEeeeecCCcceEEEEccCCCCCCCCCceeEEEecCCCceeEEeeccchhhhhceeeeecC
Q 004475 348 VYSDPGSPMMTRTSTGTNVIAKIKKENDEQIYILLNGRGFTPEGNIPFLDLFDINTGSKERIWESNREKYFETAVALVFG 427 (751)
Q Consensus 348 ~~~~~~~~~~~~spDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~ 427 (751)
+.+ +.||+..+-|+... |. .+..|.+|...+-+......... .++..+
T Consensus 390 Vcs------L~Wsk~~kEi~sth---------------G~----s~n~i~lw~~ps~~~~~~l~gH~----~RVl~l--- 437 (484)
T KOG0305|consen 390 VCS------LIWSKKYKELLSTH---------------GY----SENQITLWKYPSMKLVAELLGHT----SRVLYL--- 437 (484)
T ss_pred eee------EEEcCCCCEEEEec---------------CC----CCCcEEEEeccccceeeeecCCc----ceeEEE---
Confidence 222 88999999887766 11 22356666665544333322221 123333
Q ss_pred CcceeeccCCCEEEEEE
Q 004475 428 QGEEDINLNQLKILTSK 444 (751)
Q Consensus 428 ~~~~~~s~dg~~l~~~~ 444 (751)
++||||..++...
T Consensus 438 ----a~SPdg~~i~t~a 450 (484)
T KOG0305|consen 438 ----ALSPDGETIVTGA 450 (484)
T ss_pred ----EECCCCCEEEEec
Confidence 8999998877654
No 222
>KOG2624 consensus Triglyceride lipase-cholesterol esterase [Lipid transport and metabolism]
Probab=98.69 E-value=6.2e-07 Score=91.82 Aligned_cols=241 Identities=16% Similarity=0.142 Sum_probs=152.7
Q ss_pred cCCceEEEEEEcCCCceEEEEEEcCCCCCCCCCCCccEEEEEcCCCCcCcccCCcccCCCCccCCCC--chHHHHHHhCC
Q 004475 477 ASLQKEMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMT--PTSSLIFLARR 554 (751)
Q Consensus 477 ~~~~~e~i~~~~~~~~~i~~~~~~P~~~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~G 554 (751)
..++.|...+.+.||. |-..--.|... +++|+|++.||- .++...|...+ ..++-.|+++|
T Consensus 44 ~gy~~E~h~V~T~DgY-iL~lhRIp~~~-----~~rp~Vll~HGL-----------l~sS~~Wv~n~p~~sLaf~LadaG 106 (403)
T KOG2624|consen 44 YGYPVEEHEVTTEDGY-ILTLHRIPRGK-----KKRPVVLLQHGL-----------LASSSSWVLNGPEQSLAFLLADAG 106 (403)
T ss_pred cCCceEEEEEEccCCe-EEEEeeecCCC-----CCCCcEEEeecc-----------ccccccceecCccccHHHHHHHcC
Confidence 3477999999999987 44444446542 468999999994 22223332222 24556788999
Q ss_pred eEEEEcCCCCCCCCCCC-----------CCCchhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCC
Q 004475 555 FAVLAGPSIPIIGEGDK-----------LPNDRFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAP 623 (751)
Q Consensus 555 ~~v~~~~~~~~~g~g~~-----------~~~~~~~~~~~~d~~~~v~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~p 623 (751)
|.|-..+.|+ ..+++. +..-.+.+-...|+-+.|+++.+.. ...++..+|||+|+.....++...|
T Consensus 107 YDVWLgN~RG-n~ySr~h~~l~~~~~~~FW~FS~~Em~~yDLPA~IdyIL~~T--~~~kl~yvGHSQGtt~~fv~lS~~p 183 (403)
T KOG2624|consen 107 YDVWLGNNRG-NTYSRKHKKLSPSSDKEFWDFSWHEMGTYDLPAMIDYILEKT--GQEKLHYVGHSQGTTTFFVMLSERP 183 (403)
T ss_pred CceeeecCcC-cccchhhcccCCcCCcceeecchhhhhhcCHHHHHHHHHHhc--cccceEEEEEEccchhheehhcccc
Confidence 9998855543 222221 1112234456789999999998864 3579999999999999998888876
Q ss_pred C---ceeEEEEccCCCCCCCC---------c-----------cC----cccc-----------ccc--------------
Q 004475 624 H---LFCCGIARSGSYNKTLT---------P-----------FG----FQTE-----------FRT-------------- 651 (751)
Q Consensus 624 ~---~~~~~v~~~~~~d~~~~---------~-----------~~----~~~~-----------~~~-------------- 651 (751)
+ +++..++++|..-.... . ++ ++.. ...
T Consensus 184 ~~~~kI~~~~aLAP~~~~k~~~~~~~~~~~~~~~~~~~~~~~fg~~~f~p~~~~~~~~~~~~C~~~~~~~~lC~~~~~~~ 263 (403)
T KOG2624|consen 184 EYNKKIKSFIALAPAAFPKHIKSLLNKFLDPFLGAFSLLPLLFGRKEFLPSNLFIKKFARKICSGSKIFADLCSNFLFLL 263 (403)
T ss_pred hhhhhhheeeeecchhhhcccccHHHHhhhhhhhhhhHHHHhcCCccccchhhHHHHHHHHHhcchhHHHHHHHHHHHHH
Confidence 5 68888888886421100 0 00 0000 000
Q ss_pred ------ch--------------------------------------h---hHHHHHh-cCcccccCCCCCCEEEEEcCCC
Q 004475 652 ------LW--------------------------------------E---ATNVYIE-MSPITHANKIKKPILIIHGEVD 683 (751)
Q Consensus 652 ------~~--------------------------------------~---~~~~~~~-~~~~~~~~~~~~P~li~~G~~D 683 (751)
.| . +...|.. ..|...+.++++|+.+..|..|
T Consensus 264 ~G~~~~~~n~~~~~~~~~h~pagtSvk~~~H~~Q~~~s~~f~~yD~G~~~N~~~Y~q~~pP~Y~l~~i~~P~~l~~g~~D 343 (403)
T KOG2624|consen 264 VGWNSNNWNTTLLPVYLAHLPAGTSVKNIVHWAQIVRSGKFRKYDYGSKRNLKHYGQSTPPEYDLTNIKVPTALYYGDND 343 (403)
T ss_pred cCcchHhhhhcccchhhccCCCCccHHHHHHHHHHhcCCCccccCCCccccHhhcCCCCCCCCCccccccCEEEEecCCc
Confidence 00 0 0011111 1233456778999999999999
Q ss_pred CCCCCChHHHHHHHHHHHhCCCcEEEEEeCCCCCcC--CccccHHHHHHHHHHHHHHHh
Q 004475 684 DKVGLFPMQAERFFDALKGHGALSRLVLLPFEHHVY--AARENVMHVIWETDRWLQKYC 740 (751)
Q Consensus 684 ~~vp~~~~~~~~~~~~l~~~~~~~~~~~~~~~~H~~--~~~~~~~~~~~~~~~fl~~~l 740 (751)
.++. ++.+..+...+..... ....-+++-+|.- ...+..+.+++.+++.|....
T Consensus 344 ~l~~--~~DV~~~~~~~~~~~~-~~~~~~~~ynHlDFi~g~da~~~vy~~vi~~~~~~~ 399 (403)
T KOG2624|consen 344 WLAD--PEDVLILLLVLPNSVI-KYIVPIPEYNHLDFIWGLDAKEEVYDPVIERLRLFE 399 (403)
T ss_pred ccCC--HHHHHHHHHhcccccc-cccccCCCccceeeeeccCcHHHHHHHHHHHHHhhh
Confidence 9998 8888878777765533 2333367878852 224457788889999888665
No 223
>PF06821 Ser_hydrolase: Serine hydrolase; InterPro: IPR010662 This family contains a number of hypothetical bacterial proteins of unknown function, which may be cytosolic. The Crystal Structure Of The Yden Gene Product Swiss:P96671 from B. Subtilis has been solved. The structure shows an alpha-beta hydrolase fold suggesting an enzymatic function for these proteins [].; GO: 0016787 hydrolase activity; PDB: 3BDV_B 2QS9_A 1UXO_A.
Probab=98.69 E-value=5e-07 Score=82.21 Aligned_cols=100 Identities=18% Similarity=0.222 Sum_probs=67.4
Q ss_pred CcEEEEEeChHHHHHHHHH-HhCCCceeEEEEccCCCCCCCCccCcccccccchhhHHHHHhcCcccccCCCCCCEEEEE
Q 004475 601 SRIAVGGHSYGAFMTAHLL-AHAPHLFCCGIARSGSYNKTLTPFGFQTEFRTLWEATNVYIEMSPITHANKIKKPILIIH 679 (751)
Q Consensus 601 ~~i~l~G~S~GG~~a~~~a-~~~p~~~~~~v~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~li~~ 679 (751)
..++++|||.|+..++.++ .....+++++++.+|+..... ........ ...+. ....+..|.+++.
T Consensus 55 ~~~ilVaHSLGc~~~l~~l~~~~~~~v~g~lLVAp~~~~~~--~~~~~~~~----------~f~~~-p~~~l~~~~~via 121 (171)
T PF06821_consen 55 EPTILVAHSLGCLTALRWLAEQSQKKVAGALLVAPFDPDDP--EPFPPELD----------GFTPL-PRDPLPFPSIVIA 121 (171)
T ss_dssp TTEEEEEETHHHHHHHHHHHHTCCSSEEEEEEES--SCGCH--HCCTCGGC----------CCTTS-HCCHHHCCEEEEE
T ss_pred CCeEEEEeCHHHHHHHHHHhhcccccccEEEEEcCCCcccc--cchhhhcc----------ccccC-cccccCCCeEEEE
Confidence 4699999999999999999 667788999999999743100 00000000 00000 1122346779999
Q ss_pred cCCCCCCCCChHHHHHHHHHHHhCCCcEEEEEeCCCCCcCC
Q 004475 680 GEVDDKVGLFPMQAERFFDALKGHGALSRLVLLPFEHHVYA 720 (751)
Q Consensus 680 G~~D~~vp~~~~~~~~~~~~l~~~~~~~~~~~~~~~~H~~~ 720 (751)
+++|+.+| +..+..+.+.+. .+++.++++||...
T Consensus 122 S~nDp~vp--~~~a~~~A~~l~-----a~~~~~~~~GHf~~ 155 (171)
T PF06821_consen 122 SDNDPYVP--FERAQRLAQRLG-----AELIILGGGGHFNA 155 (171)
T ss_dssp ETTBSSS---HHHHHHHHHHHT------EEEEETS-TTSSG
T ss_pred cCCCCccC--HHHHHHHHHHcC-----CCeEECCCCCCccc
Confidence 99999999 999999998884 46999999999764
No 224
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=98.69 E-value=7.6e-06 Score=77.33 Aligned_cols=253 Identities=13% Similarity=0.087 Sum_probs=142.4
Q ss_pred ccceeecCCCCeEEEEEeecccccccCCceeEEEEEcCCCCeeeccCCCCccccceeeeeEEecCCcEEEEeecCCCCCC
Q 004475 33 INFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRDP 112 (751)
Q Consensus 33 ~~~p~~SPDG~~iaf~~~~~~~~~~~~~~~~l~i~~~~~g~~~~lt~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~ 112 (751)
...-+||+-|.+||.-. ..+.|.|+|..+-..-++..... + .+.+++||+||+.|+..+.+
T Consensus 26 a~~~~Fs~~G~~lAvGc----------~nG~vvI~D~~T~~iar~lsaH~---~-pi~sl~WS~dgr~LltsS~D----- 86 (405)
T KOG1273|consen 26 AECCQFSRWGDYLAVGC----------ANGRVVIYDFDTFRIARMLSAHV---R-PITSLCWSRDGRKLLTSSRD----- 86 (405)
T ss_pred cceEEeccCcceeeeec----------cCCcEEEEEccccchhhhhhccc---c-ceeEEEecCCCCEeeeecCC-----
Confidence 56678999999999843 34677778877755333322222 2 27799999999999877543
Q ss_pred CCCCCCCCCCceeeccccccccchhhhhccCCccchhhhhhheeeEEEEEcC-CC-CceecCCCceEEeeeeCCCCceEE
Q 004475 113 PKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DG-TAKDFGTPAVYTAVEPSPDQKYVL 190 (751)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~G-~~~~lt~~~~~~~~~~SpDG~~i~ 190 (751)
..+.++|+ +| -.+++.-...+....|.|-.+..+
T Consensus 87 --------------------------------------------~si~lwDl~~gs~l~rirf~spv~~~q~hp~k~n~~ 122 (405)
T KOG1273|consen 87 --------------------------------------------WSIKLWDLLKGSPLKRIRFDSPVWGAQWHPRKRNKC 122 (405)
T ss_pred --------------------------------------------ceeEEEeccCCCceeEEEccCccceeeeccccCCeE
Confidence 46778888 77 345554446677888888665444
Q ss_pred EEEecCCcccccccCCCceeEEEEeCCCceeeeeccCC-CCCCCCCccCCccCCCceeeeecCCCceEEEEEeccCCCCc
Q 004475 191 ITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLP-PAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDAN 269 (751)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~spdG~~~i~~~~~~~~~~~~ 269 (751)
+...-+. .-++.+......+.|...+ +..+ ...+...|.+-|++ |+...
T Consensus 123 va~~~~~------------sp~vi~~s~~~h~~Lp~d~d~dln---------~sas~~~fdr~g~y-IitGt-------- 172 (405)
T KOG1273|consen 123 VATIMEE------------SPVVIDFSDPKHSVLPKDDDGDLN---------SSASHGVFDRRGKY-IITGT-------- 172 (405)
T ss_pred EEEEecC------------CcEEEEecCCceeeccCCCccccc---------cccccccccCCCCE-EEEec--------
Confidence 4332211 1234444433333332221 1111 11123368888998 55432
Q ss_pred cccCcccceeeccCCCCCCCCceEeEeeceeEE-EEEecCCceEEEeeeecccceeEEEec-CCC--CCCccee------
Q 004475 270 VEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFS-VSWCDDSLALVNETWYKTSQTRTWLVC-PGS--KDVAPRV------ 339 (751)
Q Consensus 270 ~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~-~~~spdg~~l~~~~~~~~~~~~l~~~~-~~~--~~~~~~~------ 339 (751)
.++.|.+++.+..+=-....++. ...+. ..++-.|+.|++.+.. +-.+.|-.. +.. ..+++..
T Consensus 173 ----sKGkllv~~a~t~e~vas~rits-~~~IK~I~~s~~g~~liiNtsD--RvIR~ye~~di~~~~r~~e~e~~~K~qD 245 (405)
T KOG1273|consen 173 ----SKGKLLVYDAETLECVASFRITS-VQAIKQIIVSRKGRFLIINTSD--RVIRTYEISDIDDEGRDGEVEPEHKLQD 245 (405)
T ss_pred ----CcceEEEEecchheeeeeeeech-heeeeEEEEeccCcEEEEecCC--ceEEEEehhhhcccCccCCcChhHHHHH
Confidence 34678888775211011111222 12344 7788999998886522 212233221 221 1112211
Q ss_pred eeecc-cccccCCCCCCCeeeCCCCCEEEEeeeecCCcceEEEEccCCCCCCCCCceeEEEecCCCceeEEeeccc
Q 004475 340 LFDRV-FENVYSDPGSPMMTRTSTGTNVIAKIKKENDEQIYILLNGRGFTPEGNIPFLDLFDINTGSKERIWESNR 414 (751)
Q Consensus 340 l~~~~-~~~~~~~~~~~~~~~spDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~ 414 (751)
+.+.. ... ..||.||.+|+..+ ...-.||.|....|.+.++.....
T Consensus 246 vVNk~~Wk~---------ccfs~dgeYv~a~s--------------------~~aHaLYIWE~~~GsLVKILhG~k 292 (405)
T KOG1273|consen 246 VVNKLQWKK---------CCFSGDGEYVCAGS--------------------ARAHALYIWEKSIGSLVKILHGTK 292 (405)
T ss_pred HHhhhhhhh---------eeecCCccEEEecc--------------------ccceeEEEEecCCcceeeeecCCc
Confidence 11111 111 66899999987766 234589999999999988877654
No 225
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=98.68 E-value=2.8e-06 Score=86.59 Aligned_cols=222 Identities=15% Similarity=0.190 Sum_probs=138.4
Q ss_pred ceeEEeecCCCCCCCCcccccCCCCcccccceeecCCCCe--EEEEEeecccccccCCceeEEEEEcCCCCeeeccCCCC
Q 004475 5 TGIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKR--IAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPD 82 (751)
Q Consensus 5 ~~~~~~~~~~~~~~g~~~~l~~~~~~~~~~~p~~SPDG~~--iaf~~~~~~~~~~~~~~~~l~i~~~~~g~~~~lt~~~~ 82 (751)
..++.+++.. ..+...+|. ..++..-.+||-+.- ||+-. .+........+||-+.. .+.-..+..-..
T Consensus 146 nev~f~~~~~--f~~~~~kl~----~~~i~~f~lSpgp~~~~vAvyv---Pe~kGaPa~vri~~~~~-~~~~~~~a~ksF 215 (566)
T KOG2315|consen 146 NEVQFYDLGS--FKTIQHKLS----VSGITMLSLSPGPEPPFVAVYV---PEKKGAPASVRIYKYPE-EGQHQPVANKSF 215 (566)
T ss_pred ceEEEEecCC--ccceeeeee----ccceeeEEecCCCCCceEEEEc---cCCCCCCcEEEEecccc-ccccchhhhccc
Confidence 3677777766 445555554 235778888887543 44322 22222344566666652 233223311110
Q ss_pred ccccceeeeeEEecCCcEEEEeecCCCCCCCCCCCCCCCCceeeccccccccchhhhhccCCccchhhhhhheeeEEEEE
Q 004475 83 ICLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLG 162 (751)
Q Consensus 83 ~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 162 (751)
+...--.+.|.+-|+-|+.+... ..|.....||+...||++
T Consensus 216 --Fkadkvqm~WN~~gt~LLvLast-------------------------------------dVDktn~SYYGEq~Lyll 256 (566)
T KOG2315|consen 216 --FKADKVQMKWNKLGTALLVLAST-------------------------------------DVDKTNASYYGEQTLYLL 256 (566)
T ss_pred --cccceeEEEeccCCceEEEEEEE-------------------------------------eecCCCccccccceEEEE
Confidence 00011267899999887776321 123334456777899999
Q ss_pred cCCCC--ceecCCCceEEeeeeCCCCceEEEEEecCCcccccccCCCceeEEEEeCCCceeeeeccCCCCCCCCCccCCc
Q 004475 163 SLDGT--AKDFGTPAVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSV 240 (751)
Q Consensus 163 ~~~G~--~~~lt~~~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~ 240 (751)
+.+|+ ..+|...+.++++.|+|+|+.+++. .+-.+..+-++|+++..+-.+..++..
T Consensus 257 ~t~g~s~~V~L~k~GPVhdv~W~~s~~EF~Vv-----------yGfMPAkvtifnlr~~~v~df~egpRN---------- 315 (566)
T KOG2315|consen 257 ATQGESVSVPLLKEGPVHDVTWSPSGREFAVV-----------YGFMPAKVTIFNLRGKPVFDFPEGPRN---------- 315 (566)
T ss_pred EecCceEEEecCCCCCceEEEECCCCCEEEEE-----------EecccceEEEEcCCCCEeEeCCCCCcc----------
Confidence 99883 4566655889999999999998887 333456788899988765544333322
Q ss_pred cCCCceeeeecCCCceEEEEEeccCCCCccccCcccceeeccCCCCCCCCceEeEeeceeE-E-EEEecCCceEEEee
Q 004475 241 REGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRF-S-VSWCDDSLALVNET 316 (751)
Q Consensus 241 ~~~~~~~~~spdG~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~-~-~~~spdg~~l~~~~ 316 (751)
.+-|||.|+. |+++. ..+ .++++-++|+. ..+.|......- . +.|+|||++|+.++
T Consensus 316 -----~~~fnp~g~i-i~lAG-------FGN--L~G~mEvwDv~-----n~K~i~~~~a~~tt~~eW~PdGe~flTAT 373 (566)
T KOG2315|consen 316 -----TAFFNPHGNI-ILLAG-------FGN--LPGDMEVWDVP-----NRKLIAKFKAANTTVFEWSPDGEYFLTAT 373 (566)
T ss_pred -----ceEECCCCCE-EEEee-------cCC--CCCceEEEecc-----chhhccccccCCceEEEEcCCCcEEEEEe
Confidence 6799999998 67654 111 45788888884 245555554433 4 89999999988765
No 226
>COG2819 Predicted hydrolase of the alpha/beta superfamily [General function prediction only]
Probab=98.67 E-value=3.1e-06 Score=80.15 Aligned_cols=139 Identities=22% Similarity=0.186 Sum_probs=82.0
Q ss_pred hHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEccCCCCCCCCccCcccccccchhhH
Q 004475 577 FVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGSYNKTLTPFGFQTEFRTLWEAT 656 (751)
Q Consensus 577 ~~~~~~~d~~~~v~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~~d~~~~~~~~~~~~~~~~~~~ 656 (751)
|...+.+++.. |+.++..++.++.+|+|||+||.+++.+...+|+.|.+.++.+|..-+ .+.
T Consensus 116 f~~fL~~~lkP---~Ie~~y~~~~~~~~i~GhSlGGLfvl~aLL~~p~~F~~y~~~SPSlWw---------------~n~ 177 (264)
T COG2819 116 FREFLTEQLKP---FIEARYRTNSERTAIIGHSLGGLFVLFALLTYPDCFGRYGLISPSLWW---------------HNE 177 (264)
T ss_pred HHHHHHHhhHH---HHhcccccCcccceeeeecchhHHHHHHHhcCcchhceeeeecchhhh---------------CCH
Confidence 33444443333 333456688899999999999999999999999999999999995322 112
Q ss_pred HHHHhcCcccccCCCCCCEEEEEcCCCCCCC----CChHHHHHHHHHHHh-CCCcEEEEEeCCCCCcCCccccHHHHHHH
Q 004475 657 NVYIEMSPITHANKIKKPILIIHGEVDDKVG----LFPMQAERFFDALKG-HGALSRLVLLPFEHHVYAARENVMHVIWE 731 (751)
Q Consensus 657 ~~~~~~~~~~~~~~~~~P~li~~G~~D~~vp----~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~H~~~~~~~~~~~~~~ 731 (751)
..+.........+..++-+++-.|+.|.... .....+.+..+.+.. .+....+..+|+.+|.-. ....+..
T Consensus 178 ~~l~~~~~~~~~~~~~i~l~iG~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~f~~~~~~~H~~~----~~~~~~~ 253 (264)
T COG2819 178 AILREIESLKLLKTKRICLYIGSGELDSSRSIRMAENKQEAAELSSLLEKRTGARLVFQEEPLEHHGSV----IHASLPS 253 (264)
T ss_pred HHhccccccccCCCcceEEEecccccCcchhhhhhhHHHHHHHHHHHHhhccCCceEecccccccccch----HHHHHHH
Confidence 2222222222221222334444444443211 013334444455555 778889999998888643 3344445
Q ss_pred HHHHHH
Q 004475 732 TDRWLQ 737 (751)
Q Consensus 732 ~~~fl~ 737 (751)
++.|+.
T Consensus 254 al~~l~ 259 (264)
T COG2819 254 ALRFLD 259 (264)
T ss_pred HHHhhh
Confidence 555554
No 227
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=98.67 E-value=1.1e-06 Score=88.30 Aligned_cols=241 Identities=12% Similarity=0.046 Sum_probs=131.4
Q ss_pred CCcceeEEeecCCCCCCCCcccccCCCCcccccceeecCCCCeEEEEEeecccccccCCceeEEEEEcCCCCeeeccCCC
Q 004475 2 PFFTGIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESP 81 (751)
Q Consensus 2 ~~~~~~~~~~~~~~~~~g~~~~l~~~~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~~~~~l~i~~~~~g~~~~lt~~~ 81 (751)
+|...|..||+.+-++.-+.-+...-.+...+.+.+|||.|..|+.++ +..+..++|-+|-+......+.
T Consensus 186 s~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvs----------g~aqakl~DRdG~~~~e~~KGD 255 (641)
T KOG0772|consen 186 SLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILVVS----------GSAQAKLLDRDGFEIVEFSKGD 255 (641)
T ss_pred cccceEEEEecccccccchhhhccCcccccccceeeecCCCCeEEEEe----------cCcceeEEccCCceeeeeeccc
Confidence 566788999999844444443322222233688999999999999985 4456666666655544443332
Q ss_pred Ccc-------c-cceeeeeEEecCCcEEEEeecCCCCCCCCCCCCCCCCceeeccccccccchhhhhccCCccchhhhhh
Q 004475 82 DIC-------L-NAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDY 153 (751)
Q Consensus 82 ~~~-------~-~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (751)
.+. . -..+..-+|.|+.+..+.+... +
T Consensus 256 QYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~-D-------------------------------------------- 290 (641)
T KOG0772|consen 256 QYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSY-D-------------------------------------------- 290 (641)
T ss_pred hhhhhhhccCCceeeeeccccccCcccceEEecC-C--------------------------------------------
Confidence 211 0 0124456899999877766321 0
Q ss_pred heeeEEEEEcCCC-Cceec---CCC---ceEEeeeeCCCCceEEEEEecCCcccccccCCCceeEEEEeCCCceeeeecc
Q 004475 154 YTTAQLVLGSLDG-TAKDF---GTP---AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCD 226 (751)
Q Consensus 154 ~~~~~l~~~~~~G-~~~~l---t~~---~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~ 226 (751)
++-.||-++-.. +.+-+ +.. -.+...+|+|||+.|+-...+ ..|.+|+..+-..+....
T Consensus 291 -gtlRiWdv~~~k~q~qVik~k~~~g~Rv~~tsC~~nrdg~~iAagc~D-------------GSIQ~W~~~~~~v~p~~~ 356 (641)
T KOG0772|consen 291 -GTLRIWDVNNTKSQLQVIKTKPAGGKRVPVTSCAWNRDGKLIAAGCLD-------------GSIQIWDKGSRTVRPVMK 356 (641)
T ss_pred -CcEEEEecCCchhheeEEeeccCCCcccCceeeecCCCcchhhhcccC-------------CceeeeecCCcccccceE
Confidence 112333333222 21111 111 235688999999998765443 357778763222211100
Q ss_pred CCCCCCCCCccCCccCCCceeeeecCCCceEEEEEeccCCCCccccCcccceeeccCCCCCCCCceEeEeecee--EE-E
Q 004475 227 LPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLR--FS-V 303 (751)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~spdG~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~--~~-~ 303 (751)
..-+ ......+.+++||+||++ |+-.. ..+.|-+||+.... .....-+...-. -. .
T Consensus 357 vk~A-------H~~g~~Itsi~FS~dg~~-LlSRg------------~D~tLKvWDLrq~k-kpL~~~tgL~t~~~~tdc 415 (641)
T KOG0772|consen 357 VKDA-------HLPGQDITSISFSYDGNY-LLSRG------------FDDTLKVWDLRQFK-KPLNVRTGLPTPFPGTDC 415 (641)
T ss_pred eeec-------cCCCCceeEEEeccccch-hhhcc------------CCCceeeeeccccc-cchhhhcCCCccCCCCcc
Confidence 0000 011124678999999998 33321 23578888874221 111111111111 12 6
Q ss_pred EEecCCceEEEeeee--cccceeEEEecCCC
Q 004475 304 SWCDDSLALVNETWY--KTSQTRTWLVCPGS 332 (751)
Q Consensus 304 ~~spdg~~l~~~~~~--~~~~~~l~~~~~~~ 332 (751)
.||||.+.|+..+.. ......|+.++..+
T Consensus 416 ~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t 446 (641)
T KOG0772|consen 416 CFSPDDKLILTGTSAPNGMTAGTLFFFDRMT 446 (641)
T ss_pred ccCCCceEEEecccccCCCCCceEEEEeccc
Confidence 899999988776532 22334688888766
No 228
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=98.67 E-value=9.4e-06 Score=80.12 Aligned_cols=216 Identities=14% Similarity=0.120 Sum_probs=115.4
Q ss_pred eEEEEEcCCC-CceecCCCceEEeeeeC-CCCceEEEEEecCCcccccccCCCceeEEEEeCCCceeeeeccCCCCCCCC
Q 004475 157 AQLVLGSLDG-TAKDFGTPAVYTAVEPS-PDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIP 234 (751)
Q Consensus 157 ~~l~~~~~~G-~~~~lt~~~~~~~~~~S-pDG~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~ 234 (751)
..|+.++..+ +.+.+..+. ...+.+. +||+ |++.... .+.++|..+++.+.+...+....
T Consensus 22 ~~i~~~~~~~~~~~~~~~~~-~~G~~~~~~~g~-l~v~~~~--------------~~~~~d~~~g~~~~~~~~~~~~~-- 83 (246)
T PF08450_consen 22 GRIYRVDPDTGEVEVIDLPG-PNGMAFDRPDGR-LYVADSG--------------GIAVVDPDTGKVTVLADLPDGGV-- 83 (246)
T ss_dssp TEEEEEETTTTEEEEEESSS-EEEEEEECTTSE-EEEEETT--------------CEEEEETTTTEEEEEEEEETTCS--
T ss_pred CEEEEEECCCCeEEEEecCC-CceEEEEccCCE-EEEEEcC--------------ceEEEecCCCcEEEEeeccCCCc--
Confidence 5899999955 443333223 5566666 6755 4444322 35566888887776655421100
Q ss_pred CccCCccCCCceeeeecCCCceEEEEEeccCCCCccccCcccceeeccCCCCCCCCceEeEeeceeEE-EEEecCCceEE
Q 004475 235 VCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFS-VSWCDDSLALV 313 (751)
Q Consensus 235 ~~~~~~~~~~~~~~~spdG~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~-~~~spdg~~l~ 313 (751)
.......++++|||+ |+++.......... ..+.||+++.+ +....+...-.... ++|+|||+.|+
T Consensus 84 -----~~~~~ND~~vd~~G~--ly~t~~~~~~~~~~---~~g~v~~~~~~----~~~~~~~~~~~~pNGi~~s~dg~~ly 149 (246)
T PF08450_consen 84 -----PFNRPNDVAVDPDGN--LYVTDSGGGGASGI---DPGSVYRIDPD----GKVTVVADGLGFPNGIAFSPDGKTLY 149 (246)
T ss_dssp -----CTEEEEEEEE-TTS---EEEEEECCBCTTCG---GSEEEEEEETT----SEEEEEEEEESSEEEEEEETTSSEEE
T ss_pred -----ccCCCceEEEcCCCC--EEEEecCCCccccc---cccceEEECCC----CeEEEEecCcccccceEECCcchhee
Confidence 112244789999998 67765432211110 11679999874 23444443333334 89999999888
Q ss_pred EeeeecccceeEEEecCCCCCC---cceeeeecccccccCCCCCCCeeeCCCCCEEEEeeeecCCcceEEEEccCCCCCC
Q 004475 314 NETWYKTSQTRTWLVCPGSKDV---APRVLFDRVFENVYSDPGSPMMTRTSTGTNVIAKIKKENDEQIYILLNGRGFTPE 390 (751)
Q Consensus 314 ~~~~~~~~~~~l~~~~~~~~~~---~~~~l~~~~~~~~~~~~~~~~~~~spDG~~l~~~~~~~~~~~~~~~~~~~~~~~~ 390 (751)
+.. +...+||.++++.... ..+.+....... . ..--+++..+|+ |+....
T Consensus 150 v~d---s~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~--g--~pDG~~vD~~G~-l~va~~------------------- 202 (246)
T PF08450_consen 150 VAD---SFNGRIWRFDLDADGGELSNRRVFIDFPGGP--G--YPDGLAVDSDGN-LWVADW------------------- 202 (246)
T ss_dssp EEE---TTTTEEEEEEEETTTCCEEEEEEEEE-SSSS--C--EEEEEEEBTTS--EEEEEE-------------------
T ss_pred ecc---cccceeEEEeccccccceeeeeeEEEcCCCC--c--CCCcceEcCCCC-EEEEEc-------------------
Confidence 755 3446799999865312 112222211110 0 000166778885 333331
Q ss_pred CCCceeEEEecCCCceeEEeeccchhhhhceeeeecCCcceee-ccCCCEEEEEE
Q 004475 391 GNIPFLDLFDINTGSKERIWESNREKYFETAVALVFGQGEEDI-NLNQLKILTSK 444 (751)
Q Consensus 391 ~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-s~dg~~l~~~~ 444 (751)
....|++++.+ |+.......... .+. .++| .+|.++|+++.
T Consensus 203 -~~~~I~~~~p~-G~~~~~i~~p~~----~~t-------~~~fgg~~~~~L~vTt 244 (246)
T PF08450_consen 203 -GGGRIVVFDPD-GKLLREIELPVP----RPT-------NCAFGGPDGKTLYVTT 244 (246)
T ss_dssp -TTTEEEEEETT-SCEEEEEE-SSS----SEE-------EEEEESTTSSEEEEEE
T ss_pred -CCCEEEEECCC-ccEEEEEcCCCC----CEE-------EEEEECCCCCEEEEEe
Confidence 23378888987 666554443311 122 2456 46778888775
No 229
>PLN00181 protein SPA1-RELATED; Provisional
Probab=98.64 E-value=1.4e-05 Score=93.05 Aligned_cols=221 Identities=12% Similarity=0.050 Sum_probs=123.2
Q ss_pred ceeEEeecCCCCCCCCcc--cccCCCCcccccceeecCC-CCeEEEEEeecccccccCCceeEEEEEcCCCCeeeccCCC
Q 004475 5 TGIGIHRLLPDDSLGPEK--EVHGYPDGAKINFVSWSPD-GKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESP 81 (751)
Q Consensus 5 ~~~~~~~~~~~~~~g~~~--~l~~~~~~~~~~~p~~SPD-G~~iaf~~~~~~~~~~~~~~~~l~i~~~~~g~~~~lt~~~ 81 (751)
..|++|++.....++... .+..+.....+....|+|. +++||.. .....|.++|+.+++........
T Consensus 505 ~~I~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~las~----------~~Dg~v~lWd~~~~~~~~~~~~H 574 (793)
T PLN00181 505 KKIKIFECESIIKDGRDIHYPVVELASRSKLSGICWNSYIKSQVASS----------NFEGVVQVWDVARSQLVTEMKEH 574 (793)
T ss_pred CEEEEEECCcccccccccccceEEecccCceeeEEeccCCCCEEEEE----------eCCCeEEEEECCCCeEEEEecCC
Confidence 468888875411112111 1111122224677899875 6666654 34478888898877644332222
Q ss_pred CccccceeeeeEEec-CCcEEEEeecCCCCCCCCCCCCCCCCceeeccccccccchhhhhccCCccchhhhhhheeeEEE
Q 004475 82 DICLNAVFGSFVWVN-NSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLV 160 (751)
Q Consensus 82 ~~~~~~~~~~~~wsp-Dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 160 (751)
. ..+..++|+| |+..|+..+.+ ..|.
T Consensus 575 ~----~~V~~l~~~p~~~~~L~Sgs~D-------------------------------------------------g~v~ 601 (793)
T PLN00181 575 E----KRVWSIDYSSADPTLLASGSDD-------------------------------------------------GSVK 601 (793)
T ss_pred C----CCEEEEEEcCCCCCEEEEEcCC-------------------------------------------------CEEE
Confidence 1 1477899997 77777766432 4677
Q ss_pred EEcC-CCC-ceecCCCceEEeeee-CCCCceEEEEEecCCcccccccCCCceeEEEEeCCCcee--eeeccCCCCCCCCC
Q 004475 161 LGSL-DGT-AKDFGTPAVYTAVEP-SPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLV--RELCDLPPAEDIPV 235 (751)
Q Consensus 161 ~~~~-~G~-~~~lt~~~~~~~~~~-SpDG~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~--~~l~~~~~~~~~~~ 235 (751)
++|+ ++. ...+.....+..+.| +++|+.|++.+.+ ..|++||+..... ..+.
T Consensus 602 iWd~~~~~~~~~~~~~~~v~~v~~~~~~g~~latgs~d-------------g~I~iwD~~~~~~~~~~~~---------- 658 (793)
T PLN00181 602 LWSINQGVSIGTIKTKANICCVQFPSESGRSLAFGSAD-------------HKVYYYDLRNPKLPLCTMI---------- 658 (793)
T ss_pred EEECCCCcEEEEEecCCCeEEEEEeCCCCCEEEEEeCC-------------CeEEEEECCCCCccceEec----------
Confidence 7777 553 233333345667788 5678888876433 4688999875431 1221
Q ss_pred ccCCccCCCceeeeecCCCceEEEEEeccCCCCccccCcccceeeccCCCCC----CCCceEeEeeceeEE-EEEecCCc
Q 004475 236 CYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAE----GEKPEILHKLDLRFS-VSWCDDSL 310 (751)
Q Consensus 236 ~~~~~~~~~~~~~~spdG~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----~~~~~~l~~~~~~~~-~~~spdg~ 310 (751)
.....+..+.|+ |+.. |+..+ ..+.|.++++.... ......+........ +.|+|+++
T Consensus 659 ---~h~~~V~~v~f~-~~~~-lvs~s------------~D~~ikiWd~~~~~~~~~~~~l~~~~gh~~~i~~v~~s~~~~ 721 (793)
T PLN00181 659 ---GHSKTVSYVRFV-DSST-LVSSS------------TDNTLKLWDLSMSISGINETPLHSFMGHTNVKNFVGLSVSDG 721 (793)
T ss_pred ---CCCCCEEEEEEe-CCCE-EEEEE------------CCCEEEEEeCCCCccccCCcceEEEcCCCCCeeEEEEcCCCC
Confidence 112235577887 6665 44433 23467777763110 112233333344445 88999999
Q ss_pred eEEEeeeecccceeEEEecCCC
Q 004475 311 ALVNETWYKTSQTRTWLVCPGS 332 (751)
Q Consensus 311 ~l~~~~~~~~~~~~l~~~~~~~ 332 (751)
+|+.++. ...+++++...
T Consensus 722 ~lasgs~----D~~v~iw~~~~ 739 (793)
T PLN00181 722 YIATGSE----TNEVFVYHKAF 739 (793)
T ss_pred EEEEEeC----CCEEEEEECCC
Confidence 8887662 23455555443
No 230
>COG4757 Predicted alpha/beta hydrolase [General function prediction only]
Probab=98.63 E-value=3.1e-07 Score=83.17 Aligned_cols=221 Identities=18% Similarity=0.165 Sum_probs=128.9
Q ss_pred EEEEcCCCceEEEEEEcCCCCCCCCCCCccEEEEEcCCCCcCcccCCcccCCCCccCCCCchHHHHHHhCCeEEEEcCCC
Q 004475 484 IKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGPSI 563 (751)
Q Consensus 484 i~~~~~~~~~i~~~~~~P~~~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~v~~~~~~ 563 (751)
..++..||..+.+..|...+. .+-.+++-|+ .+.+..+ +..++...+.+||.|+. +
T Consensus 8 ~~l~~~DG~~l~~~~~pA~~~-------~~g~~~va~a-----------~Gv~~~f---YRrfA~~a~~~Gf~Vlt---~ 63 (281)
T COG4757 8 AHLPAPDGYSLPGQRFPADGK-------ASGRLVVAGA-----------TGVGQYF---YRRFAAAAAKAGFEVLT---F 63 (281)
T ss_pred cccccCCCccCccccccCCCC-------CCCcEEeccc-----------CCcchhH---hHHHHHHhhccCceEEE---E
Confidence 456677888888888754431 2322333332 1111111 12345566779999999 6
Q ss_pred CCCCCCCCCC------CchhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEE-EEccC--
Q 004475 564 PIIGEGDKLP------NDRFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCG-IARSG-- 634 (751)
Q Consensus 564 ~~~g~g~~~~------~~~~~~~~~~d~~~~v~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~-v~~~~-- 634 (751)
+++|.|++.. ...+.+-...|+..+|+++++.. .......+|||+||.+...+. +++ ++.+. +.-++
T Consensus 64 dyRG~g~S~p~~~~~~~~~~~DwA~~D~~aal~~~~~~~--~~~P~y~vgHS~GGqa~gL~~-~~~-k~~a~~vfG~gag 139 (281)
T COG4757 64 DYRGIGQSRPASLSGSQWRYLDWARLDFPAALAALKKAL--PGHPLYFVGHSFGGQALGLLG-QHP-KYAAFAVFGSGAG 139 (281)
T ss_pred ecccccCCCccccccCccchhhhhhcchHHHHHHHHhhC--CCCceEEeeccccceeecccc-cCc-ccceeeEeccccc
Confidence 6667776533 23455666799999999998753 245789999999999775444 443 33222 22221
Q ss_pred ---CCC------------CCCCccCcccc-------------c---ccc---hhhHHHHHhcCc-----ccccCCCCCCE
Q 004475 635 ---SYN------------KTLTPFGFQTE-------------F---RTL---WEATNVYIEMSP-----ITHANKIKKPI 675 (751)
Q Consensus 635 ---~~d------------~~~~~~~~~~~-------------~---~~~---~~~~~~~~~~~~-----~~~~~~~~~P~ 675 (751)
... ....+..+... . ... |+....|....| .+..+++.+|+
T Consensus 140 wsg~m~~~~~l~~~~l~~lv~p~lt~w~g~~p~~l~G~G~d~p~~v~RdW~RwcR~p~y~fddp~~~~~~q~yaaVrtPi 219 (281)
T COG4757 140 WSGWMGLRERLGAVLLWNLVGPPLTFWKGYMPKDLLGLGSDLPGTVMRDWARWCRHPRYYFDDPAMRNYRQVYAAVRTPI 219 (281)
T ss_pred cccchhhhhcccceeeccccccchhhccccCcHhhcCCCccCcchHHHHHHHHhcCccccccChhHhHHHHHHHHhcCce
Confidence 111 00000000000 0 001 111111111111 11235678999
Q ss_pred EEEEcCCCCCCCCChHHHHHHHHHHHhCCCcEEEEEeCCC----CCcCCccccHHHHHHHHHHHH
Q 004475 676 LIIHGEVDDKVGLFPMQAERFFDALKGHGALSRLVLLPFE----HHVYAARENVMHVIWETDRWL 736 (751)
Q Consensus 676 li~~G~~D~~vp~~~~~~~~~~~~l~~~~~~~~~~~~~~~----~H~~~~~~~~~~~~~~~~~fl 736 (751)
+.+...+|+-+| +.....+.+...++ +++++.++.. ||.-...+..+...++++.||
T Consensus 220 ~~~~~~DD~w~P--~As~d~f~~~y~nA--pl~~~~~~~~~~~lGH~gyfR~~~Ealwk~~L~w~ 280 (281)
T COG4757 220 TFSRALDDPWAP--PASRDAFASFYRNA--PLEMRDLPRAEGPLGHMGYFREPFEALWKEMLGWF 280 (281)
T ss_pred eeeccCCCCcCC--HHHHHHHHHhhhcC--cccceecCcccCcccchhhhccchHHHHHHHHHhh
Confidence 999999999998 88888888777654 6677777654 887655665677888888887
No 231
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=98.63 E-value=5e-07 Score=90.02 Aligned_cols=247 Identities=11% Similarity=0.075 Sum_probs=143.6
Q ss_pred cccceeecC-CCCeEEEEEeecccccccCCceeEEEEEcCC-CCeeeccCCCCccccceeeeeEEecCCcEEEEeecCCC
Q 004475 32 KINFVSWSP-DGKRIAFSVRVDEEDNVSSCKLRVWIADAET-GEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSR 109 (751)
Q Consensus 32 ~~~~p~~SP-DG~~iaf~~~~~~~~~~~~~~~~l~i~~~~~-g~~~~lt~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~ 109 (751)
.++...|.| -|..|+-. .....|+++++-+ ++..+-..+.. ..+..++||.+|..++..+.+
T Consensus 216 gvsai~~fp~~~hLlLS~----------gmD~~vklW~vy~~~~~lrtf~gH~----k~Vrd~~~s~~g~~fLS~sfD-- 279 (503)
T KOG0282|consen 216 GVSAIQWFPKKGHLLLSG----------GMDGLVKLWNVYDDRRCLRTFKGHR----KPVRDASFNNCGTSFLSASFD-- 279 (503)
T ss_pred ccchhhhccceeeEEEec----------CCCceEEEEEEecCcceehhhhcch----hhhhhhhccccCCeeeeeecc--
Confidence 588999999 66655553 3446777777655 33222222221 147788999999988776543
Q ss_pred CCCCCCCCCCCCCceeeccccccccchhhhhccCCccchhhhhhheeeEEEEEcC-CC-CceecCCCceEEeeeeCCCCc
Q 004475 110 RDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DG-TAKDFGTPAVYTAVEPSPDQK 187 (751)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~G-~~~~lt~~~~~~~~~~SpDG~ 187 (751)
..|.++|+ +| ...++........+.|.||+.
T Consensus 280 -----------------------------------------------~~lKlwDtETG~~~~~f~~~~~~~cvkf~pd~~ 312 (503)
T KOG0282|consen 280 -----------------------------------------------RFLKLWDTETGQVLSRFHLDKVPTCVKFHPDNQ 312 (503)
T ss_pred -----------------------------------------------eeeeeeccccceEEEEEecCCCceeeecCCCCC
Confidence 46778888 88 445555555666889999997
Q ss_pred eEEEEEecCCcccccccCCCceeEEEEeCCCceeeeeccCCCCCCCCCccCCccCCCceeeeecCCCceEEEEEeccCCC
Q 004475 188 YVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGD 267 (751)
Q Consensus 188 ~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~spdG~~~i~~~~~~~~~~ 267 (751)
.+++.... +..|..||..++++.+-+...+ ..+..+.|-++|++ .+.++
T Consensus 313 n~fl~G~s------------d~ki~~wDiRs~kvvqeYd~hL------------g~i~~i~F~~~g~r-FissS------ 361 (503)
T KOG0282|consen 313 NIFLVGGS------------DKKIRQWDIRSGKVVQEYDRHL------------GAILDITFVDEGRR-FISSS------ 361 (503)
T ss_pred cEEEEecC------------CCcEEEEeccchHHHHHHHhhh------------hheeeeEEccCCce-Eeeec------
Confidence 77776443 4578899999887654333221 12347799999998 33332
Q ss_pred CccccCcccceeeccCCCCCCCCceEeEeeceeEE---EEEecCCceEEEeeeecccceeEEEecCCCC-CCcceeeeec
Q 004475 268 ANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFS---VSWCDDSLALVNETWYKTSQTRTWLVCPGSK-DVAPRVLFDR 343 (751)
Q Consensus 268 ~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~---~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~-~~~~~~l~~~ 343 (751)
....+.+++.. ...+.........++ +.-+|.+++++..+. .+.|++..+.-. ....+..+.+
T Consensus 362 ------Ddks~riWe~~---~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~----dN~i~ifs~~~~~r~nkkK~feG 428 (503)
T KOG0282|consen 362 ------DDKSVRIWENR---IPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSM----DNYIAIFSTVPPFRLNKKKRFEG 428 (503)
T ss_pred ------cCccEEEEEcC---CCccchhhcchhhccCcceecCCCCCeehhhcc----CceEEEEecccccccCHhhhhcc
Confidence 11234444432 112222222233333 567899998877552 234444443221 0111222222
Q ss_pred ccccccCCCCCCCeeeCCCCCEEEEeeeecCCcceEEEEccCCCCCCCCCceeEEEecCCCceeEEe
Q 004475 344 VFENVYSDPGSPMMTRTSTGTNVIAKIKKENDEQIYILLNGRGFTPEGNIPFLDLFDINTGSKERIW 410 (751)
Q Consensus 344 ~~~~~~~~~~~~~~~~spDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l~ 410 (751)
. .+.+ ..-.+.|||||.+|+....+ ..++.||-++-+....+
T Consensus 429 h--~vaG--ys~~v~fSpDG~~l~SGdsd---------------------G~v~~wdwkt~kl~~~l 470 (503)
T KOG0282|consen 429 H--SVAG--YSCQVDFSPDGRTLCSGDSD---------------------GKVNFWDWKTTKLVSKL 470 (503)
T ss_pred e--eccC--ceeeEEEcCCCCeEEeecCC---------------------ccEEEeechhhhhhhcc
Confidence 1 1111 22227799999999887732 26777887765544333
No 232
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=98.62 E-value=8.8e-07 Score=93.71 Aligned_cols=208 Identities=16% Similarity=0.197 Sum_probs=130.9
Q ss_pred CCCCCCCcccccCCCCcccccceeecCCCCeEEEEEeecccccccCCceeEEEEEcCCCCeeeccCCCCccccceeeeeE
Q 004475 14 PDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFV 93 (751)
Q Consensus 14 ~~~~~g~~~~l~~~~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~~~~~l~i~~~~~g~~~~lt~~~~~~~~~~~~~~~ 93 (751)
.+++++..+.+.+ ....+...+||||.+.|.-.+. +....||-++ +-...-+-.+... -+-.++
T Consensus 437 D~~~~~~~~~L~G--H~GPVyg~sFsPd~rfLlScSE--------D~svRLWsl~--t~s~~V~y~GH~~----PVwdV~ 500 (707)
T KOG0263|consen 437 DDDSSGTSRTLYG--HSGPVYGCSFSPDRRFLLSCSE--------DSSVRLWSLD--TWSCLVIYKGHLA----PVWDVQ 500 (707)
T ss_pred cccCCceeEEeec--CCCceeeeeecccccceeeccC--------Ccceeeeecc--cceeEEEecCCCc----ceeeEE
Confidence 3445566666653 3446889999999999988653 4556666555 4333333222221 144667
Q ss_pred EecCCcEEEEeecCCCCCCCCCCCCCCCCceeeccccccccchhhhhccCCccchhhhhhheeeEEEEEcCCCCceecCC
Q 004475 94 WVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSLDGTAKDFGT 173 (751)
Q Consensus 94 wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~G~~~~lt~ 173 (751)
|+|-|-+.+.. ..+ +...||..|-.-..+-+..
T Consensus 501 F~P~GyYFata--s~D---------------------------------------------~tArLWs~d~~~PlRifag 533 (707)
T KOG0263|consen 501 FAPRGYYFATA--SHD---------------------------------------------QTARLWSTDHNKPLRIFAG 533 (707)
T ss_pred ecCCceEEEec--CCC---------------------------------------------ceeeeeecccCCchhhhcc
Confidence 89998444433 211 2257887776444444444
Q ss_pred C-ceEEeeeeCCCCceEEEEEecCCcccccccCCCceeEEEEeCCCceeeeeccCCCCCCCCCccCCccCCCceeeeecC
Q 004475 174 P-AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRAD 252 (751)
Q Consensus 174 ~-~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~spd 252 (751)
+ .++..+.|.|+..+++--+.+ ..+.+||..++...++..+ +..-+..+++||+
T Consensus 534 hlsDV~cv~FHPNs~Y~aTGSsD-------------~tVRlWDv~~G~~VRiF~G------------H~~~V~al~~Sp~ 588 (707)
T KOG0263|consen 534 HLSDVDCVSFHPNSNYVATGSSD-------------RTVRLWDVSTGNSVRIFTG------------HKGPVTALAFSPC 588 (707)
T ss_pred cccccceEEECCcccccccCCCC-------------ceEEEEEcCCCcEEEEecC------------CCCceEEEEEcCC
Confidence 5 677789999999999865433 3577999987766655432 1222558899999
Q ss_pred CCceEEEEEeccCCCCccccCcccceeeccCCCCCCCCceEeEeeceeEE-EEEecCCceEEEeeeecccceeEE
Q 004475 253 KPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFS-VSWCDDSLALVNETWYKTSQTRTW 326 (751)
Q Consensus 253 G~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~-~~~spdg~~l~~~~~~~~~~~~l~ 326 (751)
|++ |+-.+ ..+.|.+||+. ++.....+..+.+.+. ++||.||..|+.... +..-++|
T Consensus 589 Gr~-LaSg~------------ed~~I~iWDl~--~~~~v~~l~~Ht~ti~SlsFS~dg~vLasgg~--DnsV~lW 646 (707)
T KOG0263|consen 589 GRY-LASGD------------EDGLIKIWDLA--NGSLVKQLKGHTGTIYSLSFSRDGNVLASGGA--DNSVRLW 646 (707)
T ss_pred Cce-Eeecc------------cCCcEEEEEcC--CCcchhhhhcccCceeEEEEecCCCEEEecCC--CCeEEEE
Confidence 998 55533 33688899985 1233444555566666 999999999887652 2234566
No 233
>cd00707 Pancreat_lipase_like Pancreatic lipase-like enzymes. Lipases are esterases that can hydrolyze long-chain acyl-triglycerides into di- and monoglycerides, glycerol, and free fatty acids at a water/lipid interface. A typical feature of lipases is "interfacial activation," the process of becoming active at the lipid/water interface, although several examples of lipases have been identified that do not undergo interfacial activation . The active site of a lipase contains a catalytic triad consisting of Ser - His - Asp/Glu, but unlike most serine proteases, the active site is buried inside the structure. A "lid" or "flap" covers the active site, making it inaccessible to solvent and substrates. The lid opens during the process of interfacial activation, allowing the lipid substrate access to the active site.
Probab=98.62 E-value=1.6e-07 Score=93.47 Aligned_cols=108 Identities=10% Similarity=-0.047 Sum_probs=72.4
Q ss_pred ccEEEEEcCCCCcCcccCCcccCCCCccCCCCchHHHHHH-hCCeEEEEcCCCCCCCCCCCCCC--chhHHHHHHHHHHH
Q 004475 512 LPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFL-ARRFAVLAGPSIPIIGEGDKLPN--DRFVEQLVSSAEAA 588 (751)
Q Consensus 512 ~P~vv~~HGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~G~~v~~~~~~~~~g~g~~~~~--~~~~~~~~~d~~~~ 588 (751)
.|++|++||.+ ++. ...|.......++ ..+|.|+++|.. +.+..... ........+++...
T Consensus 36 ~p~vilIHG~~-----------~~~--~~~~~~~l~~~ll~~~~~nVi~vD~~---~~~~~~y~~a~~~~~~v~~~la~~ 99 (275)
T cd00707 36 RPTRFIIHGWT-----------SSG--EESWISDLRKAYLSRGDYNVIVVDWG---RGANPNYPQAVNNTRVVGAELAKF 99 (275)
T ss_pred CCcEEEEcCCC-----------CCC--CCcHHHHHHHHHHhcCCCEEEEEECc---cccccChHHHHHhHHHHHHHHHHH
Confidence 58999999942 111 1122223333344 468999996553 32221110 01122345677888
Q ss_pred HHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEccCC
Q 004475 589 VEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGS 635 (751)
Q Consensus 589 v~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~ 635 (751)
+++|.+...++.++|.++||||||++|..++.+.|++++.++++.|.
T Consensus 100 l~~L~~~~g~~~~~i~lIGhSlGa~vAg~~a~~~~~~v~~iv~LDPa 146 (275)
T cd00707 100 LDFLVDNTGLSLENVHLIGHSLGAHVAGFAGKRLNGKLGRITGLDPA 146 (275)
T ss_pred HHHHHHhcCCChHHEEEEEecHHHHHHHHHHHHhcCccceeEEecCC
Confidence 88887765567789999999999999999999999999999998875
No 234
>PF10340 DUF2424: Protein of unknown function (DUF2424); InterPro: IPR019436 Sterol homeostasis in eukaryotic cells relies on the reciprocal interconversion of free sterols and steryl esters. In Saccharomyces cerevisiae (Baker's yeast) sterol acetylation requires the acetyltransferase Atf2, whereas deacetylation requires Say1, a membrane-anchored deacetylase with a putative active site in the ER lumen. Lack of Say1 results in the secretion of acetylated sterols into the culture medium, indicating that the substrate specificity of Say1 determines whether acetylated sterols are secreted from the cells or whether they are deacetylated and retained. In S. cerevisiae cells lacking Say1 or Atf2 are sensitive against the plant-derived allylbenzene eugenol and both Say1 and Atf2 affect pregnenolone toxicity, indicating that lipid acetylation acts as a detoxification pathway []. Homologues of Say1 are present in the mammalian genome and can functionally substitute for Say1 in yeast demonstrating that part of this pathway has been evolutionarily conserved [].
Probab=98.62 E-value=2.3e-06 Score=85.97 Aligned_cols=216 Identities=15% Similarity=0.170 Sum_probs=118.5
Q ss_pred EEEEEc-CCCCCCCCCCCccEEEEEcCCCCcCcccCCcccCCCCccCCCCchHHHHHHhCCeEEEEcCCCCCCCCCCCCC
Q 004475 495 TATLYL-PPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGPSIPIIGEGDKLP 573 (751)
Q Consensus 495 ~~~~~~-P~~~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~v~~~~~~~~~g~g~~~~ 573 (751)
..|++. |....+.. -|+|||+||||+..... |.....+ .... .+.. ..+++..|| ...... ..
T Consensus 107 s~Wlvk~P~~~~pk~---DpVlIYlHGGGY~l~~~-------p~qi~~L-~~i~-~~l~-~~SILvLDY-sLt~~~--~~ 170 (374)
T PF10340_consen 107 SYWLVKAPNRFKPKS---DPVLIYLHGGGYFLGTT-------PSQIEFL-LNIY-KLLP-EVSILVLDY-SLTSSD--EH 170 (374)
T ss_pred eEEEEeCCcccCCCC---CcEEEEEcCCeeEecCC-------HHHHHHH-HHHH-HHcC-CCeEEEEec-cccccc--cC
Confidence 456665 65544433 49999999998643211 1111100 0111 1222 446766555 222200 11
Q ss_pred CchhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhC--C---CceeEEEEccCCCCCCCCccC----
Q 004475 574 NDRFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHA--P---HLFCCGIARSGSYNKTLTPFG---- 644 (751)
Q Consensus 574 ~~~~~~~~~~d~~~~v~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~--p---~~~~~~v~~~~~~d~~~~~~~---- 644 (751)
...+ +..+.++.+++++|.+.. ..++|.++|-|+||++++.++..- + ...+.+|+++|..+.......
T Consensus 171 ~~~y-PtQL~qlv~~Y~~Lv~~~--G~~nI~LmGDSAGGnL~Ls~LqyL~~~~~~~~Pk~~iLISPWv~l~~~~~~~~~~ 247 (374)
T PF10340_consen 171 GHKY-PTQLRQLVATYDYLVESE--GNKNIILMGDSAGGNLALSFLQYLKKPNKLPYPKSAILISPWVNLVPQDSQEGSS 247 (374)
T ss_pred CCcC-chHHHHHHHHHHHHHhcc--CCCeEEEEecCccHHHHHHHHHHHhhcCCCCCCceeEEECCCcCCcCCCCCCCcc
Confidence 2223 334677889999998432 247899999999999999887532 1 135899999998775421100
Q ss_pred cc-cccc--cchhh----HHHHHhc---------Cccccc---------CC--CCCCEEEEEcCCCCCCCCChHHHHHHH
Q 004475 645 FQ-TEFR--TLWEA----TNVYIEM---------SPITHA---------NK--IKKPILIIHGEVDDKVGLFPMQAERFF 697 (751)
Q Consensus 645 ~~-~~~~--~~~~~----~~~~~~~---------~~~~~~---------~~--~~~P~li~~G~~D~~vp~~~~~~~~~~ 697 (751)
+. +... ..+.. .+.|... .+..+. ++ -++-+|++.|+++.+ .++.+++.
T Consensus 248 ~~~n~~~D~l~~~~~~~~~~~y~~~~~~~~~~~~~~~~n~~~n~d~~~W~~I~~~~~vfVi~Ge~Evf----rddI~~~~ 323 (374)
T PF10340_consen 248 YHDNEKRDMLSYKGLSMFGDAYIGNNDPENDLNSLPFVNIEYNFDAEDWKDILKKYSVFVIYGEDEVF----RDDILEWA 323 (374)
T ss_pred ccccccccccchhhHHHHHHhhccccccccccccCCccCcccCCChhHHHHhccCCcEEEEECCcccc----HHHHHHHH
Confidence 00 0000 00000 0111111 111111 11 135799999999977 67889999
Q ss_pred HHHHhCCC-----cEEEEEeCCCCCcCCccccHHHHHHHHHHHHH
Q 004475 698 DALKGHGA-----LSRLVLLPFEHHVYAARENVMHVIWETDRWLQ 737 (751)
Q Consensus 698 ~~l~~~~~-----~~~~~~~~~~~H~~~~~~~~~~~~~~~~~fl~ 737 (751)
+.+...+. ..++.+-+++.|.-. .......+-.|..
T Consensus 324 ~~~~~~~~~~~~~~~nv~~~~~G~Hi~P----~~~~~~~~~~W~~ 364 (374)
T PF10340_consen 324 KKLNDVKPNKFSNSNNVYIDEGGIHIGP----ILNYSRDLDKWSK 364 (374)
T ss_pred HHHhhcCccccCCcceEEEecCCccccc----hhhhhcCHHHHhc
Confidence 99886543 367788888889642 3334444555543
No 235
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=98.60 E-value=2e-05 Score=74.10 Aligned_cols=219 Identities=9% Similarity=0.065 Sum_probs=124.1
Q ss_pred eEEEEEcCCCC---ceecCCC-ceEEeeeeCCCCceEEEEEecCCcccccccCCCceeEEEEeCCCceeee-eccCCCCC
Q 004475 157 AQLVLGSLDGT---AKDFGTP-AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRE-LCDLPPAE 231 (751)
Q Consensus 157 ~~l~~~~~~G~---~~~lt~~-~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~-l~~~~~~~ 231 (751)
.+|+++++.|. ...++-+ +.+.++.|.+||..|+-.+.++ .++.||.++++..+ ...+..-
T Consensus 69 r~I~LWnv~gdceN~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk-------------~v~~wD~~tG~~~rk~k~h~~~- 134 (338)
T KOG0265|consen 69 RAIVLWNVYGDCENFWVLKGHSGAVMELHGMRDGSHILSCGTDK-------------TVRGWDAETGKRIRKHKGHTSF- 134 (338)
T ss_pred ceEEEEeccccccceeeeccccceeEeeeeccCCCEEEEecCCc-------------eEEEEecccceeeehhccccce-
Confidence 58888988662 3344444 7889999999999998776543 68899999775432 2111111
Q ss_pred CCCCccCCccCCCceeeeecCCCceEEEEEeccCCCCccccCcccceeeccCCCCCCCCceEeEeeceeEE-EEEecCCc
Q 004475 232 DIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFS-VSWCDDSL 310 (751)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~spdG~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~-~~~spdg~ 310 (751)
+..+. |..+.+.++++.+ ..+++.++|+- ......+......+. +.|..++.
T Consensus 135 ------------vNs~~--p~rrg~~lv~Sgs----------dD~t~kl~D~R---~k~~~~t~~~kyqltAv~f~d~s~ 187 (338)
T KOG0265|consen 135 ------------VNSLD--PSRRGPQLVCSGS----------DDGTLKLWDIR---KKEAIKTFENKYQLTAVGFKDTSD 187 (338)
T ss_pred ------------eeecC--ccccCCeEEEecC----------CCceEEEEeec---ccchhhccccceeEEEEEeccccc
Confidence 11222 3333323444322 33577777764 222223333445555 88988888
Q ss_pred eEEEeeeecccceeEEEecCCCCCCcceeeeecccccccCCCCCCCeeeCCCCCEEEEeeeecCCcceEEEEccCCCCCC
Q 004475 311 ALVNETWYKTSQTRTWLVCPGSKDVAPRVLFDRVFENVYSDPGSPMMTRTSTGTNVIAKIKKENDEQIYILLNGRGFTPE 390 (751)
Q Consensus 311 ~l~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~spDG~~l~~~~~~~~~~~~~~~~~~~~~~~~ 390 (751)
.+..+. ..+.|-+.++... ....+..+....+.. ++.||+|..|.-.+++
T Consensus 188 qv~sgg----Idn~ikvWd~r~~--d~~~~lsGh~DtIt~------lsls~~gs~llsnsMd------------------ 237 (338)
T KOG0265|consen 188 QVISGG----IDNDIKVWDLRKN--DGLYTLSGHADTITG------LSLSRYGSFLLSNSMD------------------ 237 (338)
T ss_pred ceeecc----ccCceeeeccccC--cceEEeecccCceee------EEeccCCCcccccccc------------------
Confidence 765432 2234444455332 224444555554444 7789999999887754
Q ss_pred CCCceeEEEecCCC---ce-eEEeeccchhhhhceeeeecCCcceeeccCCCEEEEEEecCCCCCeEEEEEcCC
Q 004475 391 GNIPFLDLFDINTG---SK-ERIWESNREKYFETAVALVFGQGEEDINLNQLKILTSKESKTEITQYHILSWPL 460 (751)
Q Consensus 391 ~~~~~l~~~d~~~g---~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~l~~~~~~~ 460 (751)
..|.+||...- +. ..++..... .++. .+ =.++|||+++.+-+-... ..+|++|..+
T Consensus 238 ---~tvrvwd~rp~~p~~R~v~if~g~~h-nfek--nl----L~cswsp~~~~i~ags~d----r~vyvwd~~~ 297 (338)
T KOG0265|consen 238 ---NTVRVWDVRPFAPSQRCVKIFQGHIH-NFEK--NL----LKCSWSPNGTKITAGSAD----RFVYVWDTTS 297 (338)
T ss_pred ---ceEEEEEecccCCCCceEEEeecchh-hhhh--hc----ceeeccCCCCcccccccc----ceEEEeeccc
Confidence 37888887532 21 233332211 1100 01 127999999877655322 3488888654
No 236
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=98.58 E-value=8.2e-05 Score=72.01 Aligned_cols=178 Identities=15% Similarity=0.115 Sum_probs=109.3
Q ss_pred cccceeecCCCCeEEEEEeecccccccCCceeEEEEEcCCCC-eeeccCCCCccccceeeeeEEecCCcEEEEeecCCCC
Q 004475 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGE-AKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRR 110 (751)
Q Consensus 32 ~~~~p~~SPDG~~iaf~~~~~~~~~~~~~~~~l~i~~~~~g~-~~~lt~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~ 110 (751)
.+...+.+|+-.++|.- .+...-|+++..+|+ +-.+|..+. ++..+.||-||.+|+..-.+
T Consensus 66 svFavsl~P~~~l~aTG----------GgDD~AflW~~~~ge~~~eltgHKD-----SVt~~~FshdgtlLATGdms--- 127 (399)
T KOG0296|consen 66 SVFAVSLHPNNNLVATG----------GGDDLAFLWDISTGEFAGELTGHKD-----SVTCCSFSHDGTLLATGDMS--- 127 (399)
T ss_pred ceEEEEeCCCCceEEec----------CCCceEEEEEccCCcceeEecCCCC-----ceEEEEEccCceEEEecCCC---
Confidence 57889999977666651 223344555666776 556665554 57889999999999866221
Q ss_pred CCCCCCCCCCCCceeeccccccccchhhhhccCCccchhhhhhheeeEEEEEcC-CC-CceecCCC-ceEEeeeeCCCCc
Q 004475 111 DPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DG-TAKDFGTP-AVYTAVEPSPDQK 187 (751)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~G-~~~~lt~~-~~~~~~~~SpDG~ 187 (751)
+.|.+... +| ....+... ..+.-+.|.|-+.
T Consensus 128 ----------------------------------------------G~v~v~~~stg~~~~~~~~e~~dieWl~WHp~a~ 161 (399)
T KOG0296|consen 128 ----------------------------------------------GKVLVFKVSTGGEQWKLDQEVEDIEWLKWHPRAH 161 (399)
T ss_pred ----------------------------------------------ccEEEEEcccCceEEEeecccCceEEEEeccccc
Confidence 45556666 55 44445434 7888999999888
Q ss_pred eEEEEEecCCcccccccCCCceeEEEEeCCCceeeeeccCCCCCCCCCccCCccCCCceeeeecCCCceEEEEEeccCCC
Q 004475 188 YVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGD 267 (751)
Q Consensus 188 ~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~spdG~~~i~~~~~~~~~~ 267 (751)
.|+.-+. ...+|.|.+..+...++..+... + ...=.|.|||++ ++-..
T Consensus 162 illAG~~-------------DGsvWmw~ip~~~~~kv~~Gh~~---~---------ct~G~f~pdGKr-~~tgy------ 209 (399)
T KOG0296|consen 162 ILLAGST-------------DGSVWMWQIPSQALCKVMSGHNS---P---------CTCGEFIPDGKR-ILTGY------ 209 (399)
T ss_pred EEEeecC-------------CCcEEEEECCCcceeeEecCCCC---C---------cccccccCCCce-EEEEe------
Confidence 7776543 34799999987544444333211 1 112388999999 55433
Q ss_pred CccccCcccceeeccCCCCCCCCceEeEeeceeEE--EEEecCCceEE
Q 004475 268 ANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFS--VSWCDDSLALV 313 (751)
Q Consensus 268 ~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~--~~~spdg~~l~ 313 (751)
..+.|.+++.. ++.....+...++... ..++.++..+.
T Consensus 210 ------~dgti~~Wn~k--tg~p~~~~~~~e~~~~~~~~~~~~~~~~~ 249 (399)
T KOG0296|consen 210 ------DDGTIIVWNPK--TGQPLHKITQAEGLELPCISLNLAGSTLT 249 (399)
T ss_pred ------cCceEEEEecC--CCceeEEecccccCcCCccccccccceeE
Confidence 23578888864 3433344443332222 45566665443
No 237
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=98.58 E-value=1.6e-05 Score=85.71 Aligned_cols=147 Identities=12% Similarity=0.068 Sum_probs=85.1
Q ss_pred ceEEeeeeCCCCceEEEEEecCCcccccccCCCceeEEEEeCCCcee-eeeccCCCCCCCCCccCCccCCCceeeeecCC
Q 004475 175 AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLV-RELCDLPPAEDIPVCYNSVREGMRSISWRADK 253 (751)
Q Consensus 175 ~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~spdG 253 (751)
..+...+++-+|+++++.+.+- .|-+.+.+.... +.+-. ....+.++.++|.|
T Consensus 97 lp~r~~~v~g~g~~iaagsdD~-------------~vK~~~~~D~s~~~~lrg-------------h~apVl~l~~~p~~ 150 (933)
T KOG1274|consen 97 LPIRDLAVSGSGKMIAAGSDDT-------------AVKLLNLDDSSQEKVLRG-------------HDAPVLQLSYDPKG 150 (933)
T ss_pred ccceEEEEecCCcEEEeecCce-------------eEEEEeccccchheeecc-------------cCCceeeeeEcCCC
Confidence 4567889999999999876542 344566654322 22211 22335588999999
Q ss_pred CceEEEEEeccCCCCccccCcccceeeccCCCCCCCCceEeEe-------e-ceeEE-EEEecCCceEEEeeeeccccee
Q 004475 254 PSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHK-------L-DLRFS-VSWCDDSLALVNETWYKTSQTR 324 (751)
Q Consensus 254 ~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~-------~-~~~~~-~~~spdg~~l~~~~~~~~~~~~ 324 (751)
+. ++..+ -.+.+++++++.. .....++. . ...+. ++|+|+|..+++.. ....
T Consensus 151 ~f-LAvss------------~dG~v~iw~~~~~--~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~----~d~~ 211 (933)
T KOG1274|consen 151 NF-LAVSS------------CDGKVQIWDLQDG--ILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPP----VDNT 211 (933)
T ss_pred CE-EEEEe------------cCceEEEEEcccc--hhhhhcccCCccccccccceeeeeeecCCCCeEEeec----cCCe
Confidence 97 55543 3468888888521 11122221 1 22344 99999977666544 1246
Q ss_pred EEEecCCCCCCcceeeeecccccccCCCCCCCeeeCCCCCEEEEeeee
Q 004475 325 TWLVCPGSKDVAPRVLFDRVFENVYSDPGSPMMTRTSTGTNVIAKIKK 372 (751)
Q Consensus 325 l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~spDG~~l~~~~~~ 372 (751)
|-+++..+-. ....|-.......+.. .+|||.|++|+....+
T Consensus 212 Vkvy~r~~we-~~f~Lr~~~~ss~~~~-----~~wsPnG~YiAAs~~~ 253 (933)
T KOG1274|consen 212 VKVYSRKGWE-LQFKLRDKLSSSKFSD-----LQWSPNGKYIAASTLD 253 (933)
T ss_pred EEEEccCCce-eheeecccccccceEE-----EEEcCCCcEEeeeccC
Confidence 6677776641 1122221111111111 7899999999988843
No 238
>PTZ00420 coronin; Provisional
Probab=98.58 E-value=0.0001 Score=80.03 Aligned_cols=229 Identities=9% Similarity=0.103 Sum_probs=118.6
Q ss_pred ecCCC-ceEEeeeeCCC-CceEEEEEecCCcccccccCCCceeEEEEeCCCcee--eeeccCCCCCCCCCccCCccCCCc
Q 004475 170 DFGTP-AVYTAVEPSPD-QKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLV--RELCDLPPAEDIPVCYNSVREGMR 245 (751)
Q Consensus 170 ~lt~~-~~~~~~~~SpD-G~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~--~~l~~~~~~~~~~~~~~~~~~~~~ 245 (751)
.+..+ ..+..++|+|+ +..|+..+. ...+.+|++.++.. ..+.. + ...+......+.
T Consensus 69 ~L~gH~~~V~~lafsP~~~~lLASgS~-------------DgtIrIWDi~t~~~~~~~i~~-p-----~~~L~gH~~~V~ 129 (568)
T PTZ00420 69 KLKGHTSSILDLQFNPCFSEILASGSE-------------DLTIRVWEIPHNDESVKEIKD-P-----QCILKGHKKKIS 129 (568)
T ss_pred EEcCCCCCEEEEEEcCCCCCEEEEEeC-------------CCeEEEEECCCCCcccccccc-c-----eEEeecCCCcEE
Confidence 34444 67889999997 566655433 34688999864321 11100 0 001122234467
Q ss_pred eeeeecCCCceEEEEEeccCCCCccccCcccceeeccCCCCCCCCceEeEeeceeEE-EEEecCCceEEEeeeeccccee
Q 004475 246 SISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFS-VSWCDDSLALVNETWYKTSQTR 324 (751)
Q Consensus 246 ~~~~spdG~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~-~~~spdg~~l~~~~~~~~~~~~ 324 (751)
.++|+|++.. ++.+.. ..+.|.++|+.. +.....+ .....+. ++|+|||+.|+.+.. ...
T Consensus 130 sVaf~P~g~~-iLaSgS-----------~DgtIrIWDl~t--g~~~~~i-~~~~~V~SlswspdG~lLat~s~----D~~ 190 (568)
T PTZ00420 130 IIDWNPMNYY-IMCSSG-----------FDSFVNIWDIEN--EKRAFQI-NMPKKLSSLKWNIKGNLLSGTCV----GKH 190 (568)
T ss_pred EEEECCCCCe-EEEEEe-----------CCCeEEEEECCC--CcEEEEE-ecCCcEEEEEECCCCCEEEEEec----CCE
Confidence 8999999987 443321 235788888851 2222223 2344566 999999998876541 235
Q ss_pred EEEecCCCCCCcceeeeecccccccCCCCCCCeeeCCCCCEEEEeeeecCCcceEEEEccCCCCCCCCCceeEEEecCC-
Q 004475 325 TWLVCPGSKDVAPRVLFDRVFENVYSDPGSPMMTRTSTGTNVIAKIKKENDEQIYILLNGRGFTPEGNIPFLDLFDINT- 403 (751)
Q Consensus 325 l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~spDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~- 403 (751)
|.++|+.++ .....+..+. ...... ......|++|+++|+..+.+. .....|.+||+..
T Consensus 191 IrIwD~Rsg-~~i~tl~gH~-g~~~s~-~v~~~~fs~d~~~IlTtG~d~-----------------~~~R~VkLWDlr~~ 250 (568)
T PTZ00420 191 MHIIDPRKQ-EIASSFHIHD-GGKNTK-NIWIDGLGGDDNYILSTGFSK-----------------NNMREMKLWDLKNT 250 (568)
T ss_pred EEEEECCCC-cEEEEEeccc-CCceeE-EEEeeeEcCCCCEEEEEEcCC-----------------CCccEEEEEECCCC
Confidence 677777764 1111221111 100000 000023568888877766221 1234688999874
Q ss_pred CceeEEeeccchhhhhceeeeecCCcceeeccCCCEEEEEEecCCCCCeEEEEEcCCCceeEeecC
Q 004475 404 GSKERIWESNREKYFETAVALVFGQGEEDINLNQLKILTSKESKTEITQYHILSWPLKKSSQITNF 469 (751)
Q Consensus 404 g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~l~~~~~~~g~~~~lt~~ 469 (751)
++.......+.. ...+ .+.+.++.+.++.+... -..++++++..+....|...
T Consensus 251 ~~pl~~~~ld~~-----~~~L-----~p~~D~~tg~l~lsGkG---D~tIr~~e~~~~~~~~l~~~ 303 (568)
T PTZ00420 251 TSALVTMSIDNA-----SAPL-----IPHYDESTGLIYLIGKG---DGNCRYYQHSLGSIRKVNEY 303 (568)
T ss_pred CCceEEEEecCC-----ccce-----EEeeeCCCCCEEEEEEC---CCeEEEEEccCCcEEeeccc
Confidence 433333222211 1111 12444555555555433 23477777766666666554
No 239
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=98.58 E-value=6.5e-06 Score=77.86 Aligned_cols=167 Identities=11% Similarity=0.160 Sum_probs=88.5
Q ss_pred eEEEEEcCCCCc-eecC-CCceEEeeeeCCCCceEEEEEecCCcccccccCCCceeEEEEeCC---CceeeeeccCCCCC
Q 004475 157 AQLVLGSLDGTA-KDFG-TPAVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTD---GKLVRELCDLPPAE 231 (751)
Q Consensus 157 ~~l~~~~~~G~~-~~lt-~~~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~---~~~~~~l~~~~~~~ 231 (751)
..|.++++.|+. ..+. +.-.....+.||||++|+.... +.++.+|.+- .+..+.+..
T Consensus 209 t~i~lw~lkGq~L~~idtnq~~n~~aavSP~GRFia~~gF-------------TpDVkVwE~~f~kdG~fqev~r----- 270 (420)
T KOG2096|consen 209 TKICLWDLKGQLLQSIDTNQSSNYDAAVSPDGRFIAVSGF-------------TPDVKVWEPIFTKDGTFQEVKR----- 270 (420)
T ss_pred CcEEEEecCCceeeeeccccccccceeeCCCCcEEEEecC-------------CCCceEEEEEeccCcchhhhhh-----
Confidence 467788887743 3332 2244567889999999998754 3455666542 222221111
Q ss_pred CCCCccCCccCCCceeeeecCCCceEEEEEeccCCCCccccCcccceeeccCC--CCCCCCceEeEee-------ce-eE
Q 004475 232 DIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAE--PAEGEKPEILHKL-------DL-RF 301 (751)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~spdG~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~~~~l~~~-------~~-~~ 301 (751)
.+.+......+..++||++..+ ++-++ . .+.+.++|.+ =.-++.++.|..+ .. .+
T Consensus 271 --vf~LkGH~saV~~~aFsn~S~r-~vtvS-k-----------DG~wriwdtdVrY~~~qDpk~Lk~g~~pl~aag~~p~ 335 (420)
T KOG2096|consen 271 --VFSLKGHQSAVLAAAFSNSSTR-AVTVS-K-----------DGKWRIWDTDVRYEAGQDPKILKEGSAPLHAAGSEPV 335 (420)
T ss_pred --hheeccchhheeeeeeCCCcce-eEEEe-c-----------CCcEEEeeccceEecCCCchHhhcCCcchhhcCCCce
Confidence 0112222334557788888888 55543 1 1222232221 0012223333222 11 22
Q ss_pred EEEEecCCceEEEeeeecccceeEEEecCCCCCC--cceeeeecccccccCCCCCCCeeeCCCCCEEEEee
Q 004475 302 SVSWCDDSLALVNETWYKTSQTRTWLVCPGSKDV--APRVLFDRVFENVYSDPGSPMMTRTSTGTNVIAKI 370 (751)
Q Consensus 302 ~~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~~--~~~~l~~~~~~~~~~~~~~~~~~~spDG~~l~~~~ 370 (751)
.++.||.|+.|+.+. .+.|..+..+++.. ....+....+.. ++|++||++++...
T Consensus 336 RL~lsP~g~~lA~s~-----gs~l~~~~se~g~~~~~~e~~h~~~Is~---------is~~~~g~~~atcG 392 (420)
T KOG2096|consen 336 RLELSPSGDSLAVSF-----GSDLKVFASEDGKDYPELEDIHSTTISS---------ISYSSDGKYIATCG 392 (420)
T ss_pred EEEeCCCCcEEEeec-----CCceEEEEcccCccchhHHHhhcCceee---------EEecCCCcEEeeec
Confidence 278999999998765 23455555555411 112222233333 88999999998776
No 240
>COG3208 GrsT Predicted thioesterase involved in non-ribosomal peptide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=98.57 E-value=1.9e-06 Score=80.08 Aligned_cols=62 Identities=16% Similarity=0.079 Sum_probs=42.0
Q ss_pred CCCCCCEEEEEcCCCCCCCCChHHHHHHHHHHHhCCCcEEEEEeCCCCCcCCccccHHHHHHHHHHHHHHHhc
Q 004475 669 NKIKKPILIIHGEVDDKVGLFPMQAERFFDALKGHGALSRLVLLPFEHHVYAARENVMHVIWETDRWLQKYCL 741 (751)
Q Consensus 669 ~~~~~P~li~~G~~D~~vp~~~~~~~~~~~~l~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~fl~~~l~ 741 (751)
..+.||+.++.|++|..|. .+...... +..+..+++++++| +|.+.. +..+++++++.+.+.
T Consensus 173 ~pl~~pi~~~~G~~D~~vs--~~~~~~W~---~~t~~~f~l~~fdG-gHFfl~-----~~~~~v~~~i~~~l~ 234 (244)
T COG3208 173 APLACPIHAFGGEKDHEVS--RDELGAWR---EHTKGDFTLRVFDG-GHFFLN-----QQREEVLARLEQHLA 234 (244)
T ss_pred CCcCcceEEeccCcchhcc--HHHHHHHH---HhhcCCceEEEecC-cceehh-----hhHHHHHHHHHHHhh
Confidence 4578999999999999886 44433333 33445789999987 698863 334455555555554
No 241
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=98.57 E-value=8.9e-06 Score=78.37 Aligned_cols=118 Identities=10% Similarity=0.219 Sum_probs=74.8
Q ss_pred CCcccccCCCCcccccceeecCCCCeEEEEEeecccccccCCceeEEEEEcCCCCee----------eccCCCCccccce
Q 004475 19 GPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAK----------PLFESPDICLNAV 88 (751)
Q Consensus 19 g~~~~l~~~~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~~~~~l~i~~~~~g~~~----------~lt~~~~~~~~~~ 88 (751)
...+.|+.. ....+...+|-|-+....-+.= ...--||-.+....-.+ ++..++++ .-
T Consensus 130 t~pt~Lks~-sQrnvtclawRPlsaselavgC--------r~gIciW~~s~tln~~r~~~~~s~~~~qvl~~pgh---~p 197 (445)
T KOG2139|consen 130 TCPTKLKSV-SQRNVTCLAWRPLSASELAVGC--------RAGICIWSDSRTLNANRNIRMMSTHHLQVLQDPGH---NP 197 (445)
T ss_pred CCCceecch-hhcceeEEEeccCCcceeeeee--------cceeEEEEcCcccccccccccccccchhheeCCCC---ce
Confidence 556666632 2236788999999877433321 23345554443222122 23333332 24
Q ss_pred eeeeEEecCCcEEEEeecCCCCCCCCCCCCCCCCceeeccccccccchhhhhccCCccchhhhhhheeeEEEEEcC-CCC
Q 004475 89 FGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DGT 167 (751)
Q Consensus 89 ~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~G~ 167 (751)
+..++|.+||..|+-.+. ..+.|.++|+ +|+
T Consensus 198 Vtsmqwn~dgt~l~tAS~------------------------------------------------gsssi~iWdpdtg~ 229 (445)
T KOG2139|consen 198 VTSMQWNEDGTILVTASF------------------------------------------------GSSSIMIWDPDTGQ 229 (445)
T ss_pred eeEEEEcCCCCEEeeccc------------------------------------------------CcceEEEEcCCCCC
Confidence 778999999988876643 2267888899 777
Q ss_pred ceecCCC--ceEEeeeeCCCCceEEEEEecC
Q 004475 168 AKDFGTP--AVYTAVEPSPDQKYVLITSMHR 196 (751)
Q Consensus 168 ~~~lt~~--~~~~~~~~SpDG~~i~~~~~~~ 196 (751)
..+|... +++....|||||.+|+..+.+.
T Consensus 230 ~~pL~~~glgg~slLkwSPdgd~lfaAt~da 260 (445)
T KOG2139|consen 230 KIPLIPKGLGGFSLLKWSPDGDVLFAATCDA 260 (445)
T ss_pred cccccccCCCceeeEEEcCCCCEEEEecccc
Confidence 7777633 8888999999999998876553
No 242
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=98.56 E-value=8.8e-05 Score=72.35 Aligned_cols=224 Identities=14% Similarity=0.123 Sum_probs=126.8
Q ss_pred ccceeecC-CCCeEEEEEeecccccccCCceeEEEEEcCCCCeeec-cCCCCccccceeeeeEEecCCcEEEEeecCCCC
Q 004475 33 INFVSWSP-DGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPL-FESPDICLNAVFGSFVWVNNSTLLIFTIPSSRR 110 (751)
Q Consensus 33 ~~~p~~SP-DG~~iaf~~~~~~~~~~~~~~~~l~i~~~~~g~~~~l-t~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~ 110 (751)
...++.+| ++.-+||.++ -..-++++|..+|+..+. ...+.+- ....-+|||||++|+.+-.+-..
T Consensus 7 gH~~a~~p~~~~avafaRR---------PG~~~~v~D~~~g~~~~~~~a~~gRH---FyGHg~fs~dG~~LytTEnd~~~ 74 (305)
T PF07433_consen 7 GHGVAAHPTRPEAVAFARR---------PGTFALVFDCRTGQLLQRLWAPPGRH---FYGHGVFSPDGRLLYTTENDYET 74 (305)
T ss_pred ccceeeCCCCCeEEEEEeC---------CCcEEEEEEcCCCceeeEEcCCCCCE---EecCEEEcCCCCEEEEeccccCC
Confidence 56789999 5666666553 236788899999986544 3333321 23466999999988766221100
Q ss_pred CCCCCCCCCCCCceeeccccccccchhhhhccCCccchhhhhhheeeEEEEEcCCCCceec---CCC-ceEEeeeeCCCC
Q 004475 111 DPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSLDGTAKDF---GTP-AVYTAVEPSPDQ 186 (751)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~G~~~~l---t~~-~~~~~~~~SpDG 186 (751)
..+.|-++|+....+++ ..+ -+-.++.|.|||
T Consensus 75 --------------------------------------------g~G~IgVyd~~~~~~ri~E~~s~GIGPHel~l~pDG 110 (305)
T PF07433_consen 75 --------------------------------------------GRGVIGVYDAARGYRRIGEFPSHGIGPHELLLMPDG 110 (305)
T ss_pred --------------------------------------------CcEEEEEEECcCCcEEEeEecCCCcChhhEEEcCCC
Confidence 22678888886433333 333 445688999999
Q ss_pred ceEEEEEecCCc-----ccccccCCCceeEEEEeCCCceeeeeccCCCCCCCCCccCCccCCCceeeeecCCCceEEEEE
Q 004475 187 KYVLITSMHRPY-----SYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVE 261 (751)
Q Consensus 187 ~~i~~~~~~~~~-----~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~spdG~~~i~~~~ 261 (751)
+.|++..-.-.. ....-.......|...|..++++..-...+- ......+|.+++++||. +++..
T Consensus 111 ~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~--------~~~~lSiRHLa~~~~G~--V~~a~ 180 (305)
T PF07433_consen 111 ETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPP--------DLHQLSIRHLAVDGDGT--VAFAM 180 (305)
T ss_pred CEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeecCc--------cccccceeeEEecCCCc--EEEEE
Confidence 999885432110 0011112234667778777665432211111 11234588999999996 44432
Q ss_pred eccCCCCccccCcccceeeccCCCCCCCCceEeE-------eeceeEE-EEEecCCceEEEeeeecccceeEEEecCCCC
Q 004475 262 AQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILH-------KLDLRFS-VSWCDDSLALVNETWYKTSQTRTWLVCPGSK 333 (751)
Q Consensus 262 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~-------~~~~~~~-~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~ 333 (751)
+..+... ....-|.+... ++..+.+. ...+.+. ++++++|..++.++.+ ...+.+.|..++
T Consensus 181 -Q~qg~~~---~~~PLva~~~~----g~~~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPr---Gg~~~~~d~~tg 249 (305)
T PF07433_consen 181 -QYQGDPG---DAPPLVALHRR----GGALRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSPR---GGRVAVWDAATG 249 (305)
T ss_pred -ecCCCCC---ccCCeEEEEcC----CCcceeccCChHHHHhhCCceEEEEEeCCCCEEEEECCC---CCEEEEEECCCC
Confidence 2222211 01123444443 22222222 2234455 8999999999988854 346666777775
No 243
>KOG2551 consensus Phospholipase/carboxyhydrolase [Amino acid transport and metabolism]
Probab=98.56 E-value=1.7e-06 Score=78.51 Aligned_cols=124 Identities=19% Similarity=0.203 Sum_probs=88.9
Q ss_pred HHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCC--------CceeEEEEccCCCCCCCCccCcccccccchhhH
Q 004475 585 AEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAP--------HLFCCGIARSGSYNKTLTPFGFQTEFRTLWEAT 656 (751)
Q Consensus 585 ~~~~v~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~p--------~~~~~~v~~~~~~d~~~~~~~~~~~~~~~~~~~ 656 (751)
+.-+.+|+.+++..| ||+|+|+|+.|+..++.... -.|+-+|+++|+.-...
T Consensus 92 l~yl~~~i~enGPFD----GllGFSQGA~laa~l~~~~~~~~~~~~~P~~kF~v~~SGf~~~~~---------------- 151 (230)
T KOG2551|consen 92 LEYLEDYIKENGPFD----GLLGFSQGAALAALLAGLGQKGLPYVKQPPFKFAVFISGFKFPSK---------------- 151 (230)
T ss_pred HHHHHHHHHHhCCCc----cccccchhHHHHHHhhcccccCCcccCCCCeEEEEEEecCCCCcc----------------
Confidence 455567788888777 69999999999999987221 13688888888633210
Q ss_pred HHHHhcCcccccCCCCCCEEEEEcCCCCCCCCChHHHHHHHHHHHhCCCcEEEEEeCCCCCcCCccccHHHHHHHHHHHH
Q 004475 657 NVYIEMSPITHANKIKKPILIIHGEVDDKVGLFPMQAERFFDALKGHGALSRLVLLPFEHHVYAARENVMHVIWETDRWL 736 (751)
Q Consensus 657 ~~~~~~~~~~~~~~~~~P~li~~G~~D~~vp~~~~~~~~~~~~l~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~fl 736 (751)
...-..+...+++|.|-+.|+.|.++| ...+..+++.+..+ .+..-|+ ||.+.. ...+.+.+.+||
T Consensus 152 ----~~~~~~~~~~i~~PSLHi~G~~D~iv~--~~~s~~L~~~~~~a----~vl~Hpg-gH~VP~---~~~~~~~i~~fi 217 (230)
T KOG2551|consen 152 ----KLDESAYKRPLSTPSLHIFGETDTIVP--SERSEQLAESFKDA----TVLEHPG-GHIVPN---KAKYKEKIADFI 217 (230)
T ss_pred ----hhhhhhhccCCCCCeeEEecccceeec--chHHHHHHHhcCCC----eEEecCC-CccCCC---chHHHHHHHHHH
Confidence 000112244689999999999999999 89899999988765 4555554 798643 447788889999
Q ss_pred HHHhcC
Q 004475 737 QKYCLS 742 (751)
Q Consensus 737 ~~~l~~ 742 (751)
...+.+
T Consensus 218 ~~~~~~ 223 (230)
T KOG2551|consen 218 QSFLQE 223 (230)
T ss_pred HHHHHh
Confidence 877653
No 244
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=98.55 E-value=0.00014 Score=76.14 Aligned_cols=209 Identities=12% Similarity=0.077 Sum_probs=116.5
Q ss_pred ccCCccCCCceeeeecCCCceEEEEEeccCCCCccccCcccceeeccCCCCCCCCceEeE--e---eceeEE-EEEecCC
Q 004475 236 CYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILH--K---LDLRFS-VSWCDDS 309 (751)
Q Consensus 236 ~~~~~~~~~~~~~~spdG~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~--~---~~~~~~-~~~spdg 309 (751)
.+..+...+...+.||||++ |++... .+..||.+.-+ + ..+... . ...... ..|+-|+
T Consensus 377 l~~k~~~nIs~~aiSPdg~~-Ia~st~-----------~~~~iy~L~~~---~-~vk~~~v~~~~~~~~~a~~i~ftid~ 440 (691)
T KOG2048|consen 377 LFTKEKENISCAAISPDGNL-IAISTV-----------SRTKIYRLQPD---P-NVKVINVDDVPLALLDASAISFTIDK 440 (691)
T ss_pred eecCCccceeeeccCCCCCE-EEEeec-----------cceEEEEeccC---c-ceeEEEeccchhhhccceeeEEEecC
Confidence 34555667788999999999 777431 23466766654 2 221111 1 111233 7889999
Q ss_pred ceEEEeeeecccceeEEEecCCCCCCcceeeeecccc-cccCCCCCCCeeeCCCCCEEEEeeeecCCcceEEEEccCCCC
Q 004475 310 LALVNETWYKTSQTRTWLVCPGSKDVAPRVLFDRVFE-NVYSDPGSPMMTRTSTGTNVIAKIKKENDEQIYILLNGRGFT 388 (751)
Q Consensus 310 ~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~~spDG~~l~~~~~~~~~~~~~~~~~~~~~~ 388 (751)
..+++.+. ....+..+.++++ ..+.+...... .+ +..--+..||||.+|+..+
T Consensus 441 ~k~~~~s~---~~~~le~~el~~p--s~kel~~~~~~~~~---~~I~~l~~SsdG~yiaa~~------------------ 494 (691)
T KOG2048|consen 441 NKLFLVSK---NIFSLEEFELETP--SFKELKSIQSQAKC---PSISRLVVSSDGNYIAAIS------------------ 494 (691)
T ss_pred ceEEEEec---ccceeEEEEecCc--chhhhhccccccCC---CcceeEEEcCCCCEEEEEe------------------
Confidence 98877662 2346777777664 22233222111 11 1111267899999999988
Q ss_pred CCCCCceeEEEecCCCceeEEee-ccchhhhhceeeeecCCcceeecc-CCCEEEEEEecCCCCCeEEEEEcCCCceeEe
Q 004475 389 PEGNIPFLDLFDINTGSKERIWE-SNREKYFETAVALVFGQGEEDINL-NQLKILTSKESKTEITQYHILSWPLKKSSQI 466 (751)
Q Consensus 389 ~~~~~~~l~~~d~~~g~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~s~-dg~~l~~~~~~~~~~~~l~~~~~~~g~~~~l 466 (751)
....|+.|++++++.+.+.. .+. .+++ .+++| +-+.|+...+ ..++|..|++..+..++
T Consensus 495 ---t~g~I~v~nl~~~~~~~l~~rln~-----~vTa-------~~~~~~~~~~lvvats----~nQv~efdi~~~~l~~w 555 (691)
T KOG2048|consen 495 ---TRGQIFVYNLETLESHLLKVRLNI-----DVTA-------AAFSPFVRNRLVVATS----NNQVFEFDIEARNLTRW 555 (691)
T ss_pred ---ccceEEEEEcccceeecchhccCc-----ceee-------eeccccccCcEEEEec----CCeEEEEecchhhhhhh
Confidence 33478999999887766542 111 1222 35553 3445665542 34689999855544444
Q ss_pred ecCCCCCCCccCCceEEEEEEcCCCceEEEEEEcCCCCCCCCCCCccEEEEEcCCCC
Q 004475 467 TNFPHPYPTLASLQKEMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDY 523 (751)
Q Consensus 467 t~~~~~~~~~~~~~~e~i~~~~~~~~~i~~~~~~P~~~~~~~~~~~P~vv~~HGg~~ 523 (751)
...+.. .+ ..+ +... ...+.++.+-|+ .|..+++|++.|
T Consensus 556 s~~nt~--nl---pk~---~~~l-~~~~~gisfd~~---------n~s~~~~~~a~w 594 (691)
T KOG2048|consen 556 SKNNTR--NL---PKE---PKTL-IPGIPGISFDPK---------NSSRFIVYDAHW 594 (691)
T ss_pred hhcccc--cc---ccC---hhhc-CCCCceEEeCCC---------CccEEEEEcCcE
Confidence 433320 11 111 1111 124677777764 367888888654
No 245
>PF06342 DUF1057: Alpha/beta hydrolase of unknown function (DUF1057); InterPro: IPR010463 This entry consists of proteins of unknown function which have an alpha/beta hydrolase fold.
Probab=98.52 E-value=8.2e-06 Score=77.43 Aligned_cols=103 Identities=15% Similarity=0.033 Sum_probs=66.2
Q ss_pred CccEEEEEcCCCCcCcccCCcccCCCCccCCCCchHHHHHHhCCeEEEEcCCCCCCCCCCCCCCchhHHHHHHHHHHHHH
Q 004475 511 PLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGPSIPIIGEGDKLPNDRFVEQLVSSAEAAVE 590 (751)
Q Consensus 511 ~~P~vv~~HGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~v~~~~~~~~~g~g~~~~~~~~~~~~~~d~~~~v~ 590 (751)
+..+||-+||.| |+-+.|. .....|.+.|++++..++ +|.|....+..... .-++-...++
T Consensus 34 ~~gTVv~~hGsP-----------GSH~DFk----Yi~~~l~~~~iR~I~iN~---PGf~~t~~~~~~~~-~n~er~~~~~ 94 (297)
T PF06342_consen 34 PLGTVVAFHGSP-----------GSHNDFK----YIRPPLDEAGIRFIGINY---PGFGFTPGYPDQQY-TNEERQNFVN 94 (297)
T ss_pred CceeEEEecCCC-----------CCccchh----hhhhHHHHcCeEEEEeCC---CCCCCCCCCccccc-ChHHHHHHHH
Confidence 366899999976 2223443 345577889999999554 45544433221110 0112223344
Q ss_pred HHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEccCC
Q 004475 591 EVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGS 635 (751)
Q Consensus 591 ~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~ 635 (751)
.|.+.-.++ +++.++|||.|+-.|+.++..+| ..++++++|+
T Consensus 95 ~ll~~l~i~-~~~i~~gHSrGcenal~la~~~~--~~g~~lin~~ 136 (297)
T PF06342_consen 95 ALLDELGIK-GKLIFLGHSRGCENALQLAVTHP--LHGLVLINPP 136 (297)
T ss_pred HHHHHcCCC-CceEEEEeccchHHHHHHHhcCc--cceEEEecCC
Confidence 444443455 78999999999999999999995 4677777765
No 246
>COG2021 MET2 Homoserine acetyltransferase [Amino acid transport and metabolism]
Probab=98.52 E-value=3.5e-06 Score=83.21 Aligned_cols=153 Identities=17% Similarity=0.067 Sum_probs=95.5
Q ss_pred HHHHHHHHHHHHHHHHcCCCCCCcEE-EEEeChHHHHHHHHHHhCCCceeEEEEccCCCC-------------------C
Q 004475 579 EQLVSSAEAAVEEVVRRGVADPSRIA-VGGHSYGAFMTAHLLAHAPHLFCCGIARSGSYN-------------------K 638 (751)
Q Consensus 579 ~~~~~d~~~~v~~l~~~~~id~~~i~-l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~~d-------------------~ 638 (751)
.-.++|..++-+.|.++-.| +++. ++|.||||+.|+..+..+|+++..+|.+++... .
T Consensus 126 ~~ti~D~V~aq~~ll~~LGI--~~l~avvGgSmGGMqaleWa~~yPd~V~~~i~ia~~~r~s~~~ia~~~~~r~AI~~DP 203 (368)
T COG2021 126 VITIRDMVRAQRLLLDALGI--KKLAAVVGGSMGGMQALEWAIRYPDRVRRAIPIATAARLSAQNIAFNEVQRQAIEADP 203 (368)
T ss_pred cccHHHHHHHHHHHHHhcCc--ceEeeeeccChHHHHHHHHHHhChHHHhhhheecccccCCHHHHHHHHHHHHHHHhCC
Confidence 34567777777777665344 4665 999999999999999999999988887776411 0
Q ss_pred CC--Cc-c-Cccccc--------------------ccchh--------------hHHHH---------------------
Q 004475 639 TL--TP-F-GFQTEF--------------------RTLWE--------------ATNVY--------------------- 659 (751)
Q Consensus 639 ~~--~~-~-~~~~~~--------------------~~~~~--------------~~~~~--------------------- 659 (751)
.. -. + +...+. ..++. ..+.|
T Consensus 204 ~~n~G~Y~~~~~P~~GL~~AR~l~~ltYrS~~~~~~rF~r~~~~~~~~~~~~~f~vESYL~~qg~kf~~rfDaNsYL~lt 283 (368)
T COG2021 204 DWNGGDYYEGTQPERGLRLARMLAHLTYRSEEELDERFGRRLQADPLRGGGVRFAVESYLDYQGDKFVARFDANSYLYLT 283 (368)
T ss_pred CccCCCccCCCCcchhHHHHHHHHHHHccCHHHHHHHhcccccccccCCCchhHHHHHHHHHHHHHHHhccCcchHHHHH
Confidence 00 00 0 000000 00000 11111
Q ss_pred ---HhcCccc-------ccCCCCCCEEEEEcCCCCCCCCChHHHHHHHHHHHhCCCcEEEEEeCCCCCcCCccccHHHHH
Q 004475 660 ---IEMSPIT-------HANKIKKPILIIHGEVDDKVGLFPMQAERFFDALKGHGALSRLVLLPFEHHVYAARENVMHVI 729 (751)
Q Consensus 660 ---~~~~~~~-------~~~~~~~P~li~~G~~D~~vp~~~~~~~~~~~~l~~~~~~~~~~~~~~~~H~~~~~~~~~~~~ 729 (751)
..+++.. -+++++.|+|++.-+.|.+.| +.+.+++.+.|...+. -..+-...||.-... ....+.
T Consensus 284 ~ald~~D~s~~~~~l~~al~~i~~~~lv~gi~sD~lfp--~~~~~~~~~~L~~~~~--~~~i~S~~GHDaFL~-e~~~~~ 358 (368)
T COG2021 284 RALDYHDVSRGRGDLTAALARIKAPVLVVGITSDWLFP--PELQRALAEALPAAGA--LREIDSPYGHDAFLV-ESEAVG 358 (368)
T ss_pred HHHHhcCCCCCcCcHHHHHhcCccCEEEEEecccccCC--HHHHHHHHHhccccCc--eEEecCCCCchhhhc-chhhhh
Confidence 1111222 266789999999999999999 9999999999988765 223444568875432 233455
Q ss_pred HHHHHHHHH
Q 004475 730 WETDRWLQK 738 (751)
Q Consensus 730 ~~~~~fl~~ 738 (751)
..+..||..
T Consensus 359 ~~i~~fL~~ 367 (368)
T COG2021 359 PLIRKFLAL 367 (368)
T ss_pred HHHHHHhhc
Confidence 677777753
No 247
>TIGR03230 lipo_lipase lipoprotein lipase. Members of this protein family are lipoprotein lipase (EC 3.1.1.34), a eukaryotic triacylglycerol lipase active in plasma and similar to pancreatic and hepatic triacylglycerol lipases (EC 3.1.1.3). It is also called clearing factor. It cleaves chylomicron and VLDL triacylglycerols; it also has phospholipase A-1 activity.
Probab=98.52 E-value=8.9e-07 Score=92.03 Aligned_cols=109 Identities=8% Similarity=-0.022 Sum_probs=74.3
Q ss_pred ccEEEEEcCCCCcCcccCCcccCCCCccCCCCchHHHHHHh--CCeEEEEcCCCCCCCCCCCCCC--chhHHHHHHHHHH
Q 004475 512 LPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLA--RRFAVLAGPSIPIIGEGDKLPN--DRFVEQLVSSAEA 587 (751)
Q Consensus 512 ~P~vv~~HGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~G~~v~~~~~~~~~g~g~~~~~--~~~~~~~~~d~~~ 587 (751)
.|++|++||.+. . ..+..|...+...|.. ..|.|++ .|..|.|.+... ........+++.+
T Consensus 41 ~ptvIlIHG~~~-----------s-~~~~~w~~~l~~al~~~~~d~nVI~---VDw~g~g~s~y~~a~~~t~~vg~~la~ 105 (442)
T TIGR03230 41 TKTFIVIHGWTV-----------T-GMFESWVPKLVAALYEREPSANVIV---VDWLSRAQQHYPTSAAYTKLVGKDVAK 105 (442)
T ss_pred CCeEEEECCCCc-----------C-CcchhhHHHHHHHHHhccCCCEEEE---EECCCcCCCCCccccccHHHHHHHHHH
Confidence 589999999521 0 0112222223333332 3699999 445555554221 2233455677888
Q ss_pred HHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEccCC
Q 004475 588 AVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGS 635 (751)
Q Consensus 588 ~v~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~ 635 (751)
.+++|.+...++.+++.|+||||||++|..++.+.|+++..++++.|.
T Consensus 106 lI~~L~~~~gl~l~~VhLIGHSLGAhIAg~ag~~~p~rV~rItgLDPA 153 (442)
T TIGR03230 106 FVNWMQEEFNYPWDNVHLLGYSLGAHVAGIAGSLTKHKVNRITGLDPA 153 (442)
T ss_pred HHHHHHHhhCCCCCcEEEEEECHHHHHHHHHHHhCCcceeEEEEEcCC
Confidence 889887654467789999999999999999999999999999998885
No 248
>PF03959 FSH1: Serine hydrolase (FSH1); InterPro: IPR005645 This entry represents proteins belonging to the AB hydrolase family. It consists of serine hydrolases of unknown specificity [, ] and includes uncharacterised proteins.; PDB: 1YCD_A.
Probab=98.51 E-value=8.8e-07 Score=84.62 Aligned_cols=104 Identities=24% Similarity=0.196 Sum_probs=61.2
Q ss_pred HHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhC--------CCceeEEEEccCCCCCCCCccCcccccccchhhHHH
Q 004475 587 AAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHA--------PHLFCCGIARSGSYNKTLTPFGFQTEFRTLWEATNV 658 (751)
Q Consensus 587 ~~v~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~--------p~~~~~~v~~~~~~d~~~~~~~~~~~~~~~~~~~~~ 658 (751)
.+.+++.+.+.+ .+|+|+|+||.+|..++... ...++.+|++++.......
T Consensus 92 ~l~~~i~~~GPf----dGvlGFSQGA~lAa~ll~~~~~~~~~~~~~~~kf~V~~sg~~p~~~~----------------- 150 (212)
T PF03959_consen 92 YLRDYIEENGPF----DGVLGFSQGAALAALLLALQQRGRPDGAHPPFKFAVFISGFPPPDPD----------------- 150 (212)
T ss_dssp HHHHHHHHH-------SEEEEETHHHHHHHHHHHHHHHHST--T----SEEEEES----EEE------------------
T ss_pred HHHHHHHhcCCe----EEEEeecHHHHHHHHHHHHHHhhcccccCCCceEEEEEcccCCCchh-----------------
Confidence 333444444433 58999999999999988642 1247899999886431100
Q ss_pred HHhcCcccccCCCCCCEEEEEcCCCCCCCCChHHHHHHHHHHHhCCCcEEEEEeCCCCCcCC
Q 004475 659 YIEMSPITHANKIKKPILIIHGEVDDKVGLFPMQAERFFDALKGHGALSRLVLLPFEHHVYA 720 (751)
Q Consensus 659 ~~~~~~~~~~~~~~~P~li~~G~~D~~vp~~~~~~~~~~~~l~~~~~~~~~~~~~~~~H~~~ 720 (751)
+.......++++|+|-++|++|.+++ .+.++.+++.+... .+++..++ ||.+.
T Consensus 151 ---~~~~~~~~~i~iPtlHv~G~~D~~~~--~~~s~~L~~~~~~~---~~v~~h~g-GH~vP 203 (212)
T PF03959_consen 151 ---YQELYDEPKISIPTLHVIGENDPVVP--PERSEALAEMFDPD---ARVIEHDG-GHHVP 203 (212)
T ss_dssp ---GTTTT--TT---EEEEEEETT-SSS---HHHHHHHHHHHHHH---EEEEEESS-SSS--
T ss_pred ---hhhhhccccCCCCeEEEEeCCCCCcc--hHHHHHHHHhccCC---cEEEEECC-CCcCc
Confidence 00000234578999999999999998 88999999988764 57777776 67763
No 249
>COG2272 PnbA Carboxylesterase type B [Lipid metabolism]
Probab=98.51 E-value=7.2e-07 Score=91.19 Aligned_cols=127 Identities=22% Similarity=0.177 Sum_probs=84.0
Q ss_pred EEEEEEcCCCCCCCCCCCccEEEEEcCCCCcCcccCCcccCCCCccCCCCchHHHHHHhCC-eEEEEcCCC-CCCCCCC-
Q 004475 494 LTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARR-FAVLAGPSI-PIIGEGD- 570 (751)
Q Consensus 494 i~~~~~~P~~~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G-~~v~~~~~~-~~~g~g~- 570 (751)
+.--+|.|+. + ..++|+|||+|||++..++... .+ .....|+++| ++|+.++|+ +..|+=.
T Consensus 80 L~LNIwaP~~--~--a~~~PVmV~IHGG~y~~Gs~s~----------~~--ydgs~La~~g~vVvVSvNYRLG~lGfL~~ 143 (491)
T COG2272 80 LYLNIWAPEV--P--AEKLPVMVYIHGGGYIMGSGSE----------PL--YDGSALAARGDVVVVSVNYRLGALGFLDL 143 (491)
T ss_pred eeEEeeccCC--C--CCCCcEEEEEeccccccCCCcc----------cc--cChHHHHhcCCEEEEEeCcccccceeeeh
Confidence 6777888982 1 3348999999999876543321 11 1245678888 888887774 2333211
Q ss_pred -CCC--CchhHHHHHHHHHHHHHHHHHc---CCCCCCcEEEEEeChHHHHHHHHHHhC--CCceeEEEEccCCC
Q 004475 571 -KLP--NDRFVEQLVSSAEAAVEEVVRR---GVADPSRIAVGGHSYGAFMTAHLLAHA--PHLFCCGIARSGSY 636 (751)
Q Consensus 571 -~~~--~~~~~~~~~~d~~~~v~~l~~~---~~id~~~i~l~G~S~GG~~a~~~a~~~--p~~~~~~v~~~~~~ 636 (751)
+.. ........+.|.+.+++|++++ =.=|+++|-|+|.|+||+.++.+++.. ...|..+|+.+|..
T Consensus 144 ~~~~~~~~~~~n~Gl~DqilALkWV~~NIe~FGGDp~NVTl~GeSAGa~si~~Lla~P~AkGLF~rAi~~Sg~~ 217 (491)
T COG2272 144 SSLDTEDAFASNLGLLDQILALKWVRDNIEAFGGDPQNVTLFGESAGAASILTLLAVPSAKGLFHRAIALSGAA 217 (491)
T ss_pred hhccccccccccccHHHHHHHHHHHHHHHHHhCCCccceEEeeccchHHHHHHhhcCccchHHHHHHHHhCCCC
Confidence 000 0001123578899999999875 124899999999999999998887652 23577778888764
No 250
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=98.49 E-value=5.8e-05 Score=74.41 Aligned_cols=284 Identities=15% Similarity=0.151 Sum_probs=141.2
Q ss_pred cceeEEeecCCCCCCCCcccccCCCCcccccceeecCCCCeEEEEEeecccccccCCceeEEEEEcCCCCe---eeccCC
Q 004475 4 FTGIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEA---KPLFES 80 (751)
Q Consensus 4 ~~~~~~~~~~~~~~~g~~~~l~~~~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~~~~~l~i~~~~~g~~---~~lt~~ 80 (751)
.+.+|++|.+. ++..=.. +.+ -..+..+||||+.++.+...-.....++..--|-++|+++=.+ ..|-..
T Consensus 16 ~~rv~viD~d~----~k~lGmi--~~g-~~~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k 88 (342)
T PF06433_consen 16 TSRVYVIDADS----GKLLGMI--DTG-FLGNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPK 88 (342)
T ss_dssp SEEEEEEETTT----TEEEEEE--EEE-SSEEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS
T ss_pred cceEEEEECCC----CcEEEEe--ecc-cCCceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCc
Confidence 35789999877 6654322 333 3567889999999987664111011112233455667665322 122110
Q ss_pred CCcccc-ceeeeeEEecCCcEEEEeecCCCCCCCCCCCCCCCCceeeccccccccchhhhhccCCccchhhhhhheeeEE
Q 004475 81 PDICLN-AVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQL 159 (751)
Q Consensus 81 ~~~~~~-~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 159 (751)
+ +-.. ......+.|+||+++++.... ....+
T Consensus 89 ~-R~~~~~~~~~~~ls~dgk~~~V~N~T-----------------------------------------------Pa~SV 120 (342)
T PF06433_consen 89 P-RAQVVPYKNMFALSADGKFLYVQNFT-----------------------------------------------PATSV 120 (342)
T ss_dssp --B--BS--GGGEEE-TTSSEEEEEEES-----------------------------------------------SSEEE
T ss_pred c-hheecccccceEEccCCcEEEEEccC-----------------------------------------------CCCeE
Confidence 0 0000 112366899999999887321 11578
Q ss_pred EEEcC-CCCc-eecCCCceEEeeeeCCCCceEEEEEecCCcccccccCCCceeEEE--EeCCCceeeeeccCCCCCCCCC
Q 004475 160 VLGSL-DGTA-KDFGTPAVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQV--WTTDGKLVRELCDLPPAEDIPV 235 (751)
Q Consensus 160 ~~~~~-~G~~-~~lt~~~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~l~~--~d~~~~~~~~l~~~~~~~~~~~ 235 (751)
-++|+ .++. ..+.-++...-+-+.+++ +...+.+. .+.. .|.+|+..+..+..-..+..|.
T Consensus 121 tVVDl~~~kvv~ei~~PGC~~iyP~~~~~--F~~lC~DG-------------sl~~v~Ld~~Gk~~~~~t~~F~~~~dp~ 185 (342)
T PF06433_consen 121 TVVDLAAKKVVGEIDTPGCWLIYPSGNRG--FSMLCGDG-------------SLLTVTLDADGKEAQKSTKVFDPDDDPL 185 (342)
T ss_dssp EEEETTTTEEEEEEEGTSEEEEEEEETTE--EEEEETTS-------------CEEEEEETSTSSEEEEEEEESSTTTS-B
T ss_pred EEEECCCCceeeeecCCCEEEEEecCCCc--eEEEecCC-------------ceEEEEECCCCCEeEeeccccCCCCccc
Confidence 88999 4433 233222222223333333 22222221 2333 3444554433322111111111
Q ss_pred ccCCccCCCceeeeecCCCceEEEEEeccCCCCccccCcccceeeccCCCCCCCCceEeEe-------------eceeEE
Q 004475 236 CYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHK-------------LDLRFS 302 (751)
Q Consensus 236 ~~~~~~~~~~~~~~spdG~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~-------------~~~~~~ 302 (751)
.....++.++.+ ++|.+ ..+.+|.+++. +..++.... .++...
T Consensus 186 --------f~~~~~~~~~~~-~~F~S------------y~G~v~~~dls---g~~~~~~~~~~~~t~~e~~~~WrPGG~Q 241 (342)
T PF06433_consen 186 --------FEHPAYSRDGGR-LYFVS------------YEGNVYSADLS---GDSAKFGKPWSLLTDAEKADGWRPGGWQ 241 (342)
T ss_dssp ---------S--EEETTTTE-EEEEB------------TTSEEEEEEET---TSSEEEEEEEESS-HHHHHTTEEE-SSS
T ss_pred --------ccccceECCCCe-EEEEe------------cCCEEEEEecc---CCcccccCcccccCccccccCcCCccee
Confidence 113356666666 67765 55789998885 333222211 122334
Q ss_pred -EEEecCCceEEEeeee------cccceeEEEecCCCCCCcceeee-ecccccccCCCCCCCeeeCCCCCEEEEeeeecC
Q 004475 303 -VSWCDDSLALVNETWY------KTSQTRTWLVCPGSKDVAPRVLF-DRVFENVYSDPGSPMMTRTSTGTNVIAKIKKEN 374 (751)
Q Consensus 303 -~~~spdg~~l~~~~~~------~~~~~~l~~~~~~~~~~~~~~l~-~~~~~~~~~~~~~~~~~~spDG~~l~~~~~~~~ 374 (751)
+++.+..++|+..-.. .....+||.+|+.++ ....++. ..... + ++.|.|.+-++|....
T Consensus 242 ~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~-krv~Ri~l~~~~~---S------i~Vsqd~~P~L~~~~~-- 309 (342)
T PF06433_consen 242 LIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTH-KRVARIPLEHPID---S------IAVSQDDKPLLYALSA-- 309 (342)
T ss_dssp -EEEETTTTEEEEEEEE--TT-TTS-EEEEEEEETTTT-EEEEEEEEEEEES---E------EEEESSSS-EEEEEET--
T ss_pred eeeeccccCeEEEEecCCCCCCccCCceEEEEEECCCC-eEEEEEeCCCccc---e------EEEccCCCcEEEEEcC--
Confidence 6777777666654321 224478999999996 1112222 12222 2 7789999977776521
Q ss_pred CcceEEEEccCCCCCCCCCceeEEEecCCCceeEEe
Q 004475 375 DEQIYILLNGRGFTPEGNIPFLDLFDINTGSKERIW 410 (751)
Q Consensus 375 ~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l~ 410 (751)
....|.++|..+|+..+..
T Consensus 310 -----------------~~~~l~v~D~~tGk~~~~~ 328 (342)
T PF06433_consen 310 -----------------GDGTLDVYDAATGKLVRSI 328 (342)
T ss_dssp -----------------TTTEEEEEETTT--EEEEE
T ss_pred -----------------CCCeEEEEeCcCCcEEeeh
Confidence 2237999999999876553
No 251
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=98.49 E-value=2.2e-05 Score=72.86 Aligned_cols=167 Identities=14% Similarity=0.207 Sum_probs=101.1
Q ss_pred EEEEEcCC-C---CceecCCC---ceEEeeeeCCCCceEEEEEecCCcccccccCCCceeEEEEeCCCceeeeeccCCCC
Q 004475 158 QLVLGSLD-G---TAKDFGTP---AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPA 230 (751)
Q Consensus 158 ~l~~~~~~-G---~~~~lt~~---~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~ 230 (751)
.|.+++.. + ..+.+.+. ..++.++|||.|++|+..+.+. ...+|....++.+.+...++-
T Consensus 38 ~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD~-------------t~~Iw~k~~~efecv~~lEGH 104 (312)
T KOG0645|consen 38 AVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGRYLASASFDA-------------TVVIWKKEDGEFECVATLEGH 104 (312)
T ss_pred eEEEEecCCCCcEEEEEeccccchheeeeeeecCCCcEEEEeeccc-------------eEEEeecCCCceeEEeeeecc
Confidence 45555553 3 33333332 6788999999999998876553 455666666655555444433
Q ss_pred CCCCCccCCccCCCceeeeecCCCceEEEEEeccCCCCccccCcccceeeccCCCCCCCC---ceEeEeeceeEE-EEEe
Q 004475 231 EDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEK---PEILHKLDLRFS-VSWC 306 (751)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~spdG~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~---~~~l~~~~~~~~-~~~s 306 (751)
+..+..++||++|++ |+-++ ....++++.++. +.+ ...|..+...+- +.|.
T Consensus 105 ----------EnEVK~Vaws~sG~~-LATCS------------RDKSVWiWe~de--ddEfec~aVL~~HtqDVK~V~WH 159 (312)
T KOG0645|consen 105 ----------ENEVKCVAWSASGNY-LATCS------------RDKSVWIWEIDE--DDEFECIAVLQEHTQDVKHVIWH 159 (312)
T ss_pred ----------ccceeEEEEcCCCCE-EEEee------------CCCeEEEEEecC--CCcEEEEeeeccccccccEEEEc
Confidence 234568999999998 66665 123677777641 222 223344444555 8999
Q ss_pred cCCceEEEeeeecccceeEEEecCCCCCCcceeeeecccccccCCCCCCCeeeCCCCCEEEEeee
Q 004475 307 DDSLALVNETWYKTSQTRTWLVCPGSKDVAPRVLFDRVFENVYSDPGSPMMTRTSTGTNVIAKIK 371 (751)
Q Consensus 307 pdg~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~spDG~~l~~~~~ 371 (751)
|.-.. +|+..+++ .-.+|.-..+. +-...+..++....+|. ++|.++|..|+..+.
T Consensus 160 Pt~dl-L~S~SYDn-TIk~~~~~~dd-dW~c~~tl~g~~~TVW~------~~F~~~G~rl~s~sd 215 (312)
T KOG0645|consen 160 PTEDL-LFSCSYDN-TIKVYRDEDDD-DWECVQTLDGHENTVWS------LAFDNIGSRLVSCSD 215 (312)
T ss_pred CCcce-eEEeccCC-eEEEEeecCCC-CeeEEEEecCccceEEE------EEecCCCceEEEecC
Confidence 97664 45443332 24566554422 13334444444456676 889999999988883
No 252
>PF00135 COesterase: Carboxylesterase family The prints entry is specific to acetylcholinesterase; InterPro: IPR002018 Higher eukaryotes have many distinct esterases. Among the different types are those which act on carboxylic esters (3.1.1 from EC). Carboxyl-esterases have been classified into three categories (A, B and C) on the basis of differential patterns of inhibition by organophosphates. The sequence of a number of type-B carboxylesterases indicates [, , ] that the majority are evolutionary related. As is the case for lipases and serine proteases, the catalytic apparatus of esterases involves three residues (catalytic triad): a serine, a glutamate or aspartate and a histidine.; PDB: 3B3Q_A 1CLE_B 1GQS_A 2VJD_A 1HBJ_A 2C5G_A 1U65_A 2WG1_A 1FSS_A 3M3D_A ....
Probab=98.48 E-value=2.3e-07 Score=103.60 Aligned_cols=130 Identities=19% Similarity=0.148 Sum_probs=81.9
Q ss_pred eEEEEEEcCCCCCCCCCCCccEEEEEcCCCCcCcccCCcccCCCCccCCCCchHHHHHHhCCeEEEEcCCCC-CCCCCCC
Q 004475 493 PLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGPSIP-IIGEGDK 571 (751)
Q Consensus 493 ~i~~~~~~P~~~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~v~~~~~~~-~~g~g~~ 571 (751)
=+..-+|.|....... ++|++|++|||++..++... . .......++.++++||.++||- ..|+-..
T Consensus 108 CL~LnI~~P~~~~~~~--~lPV~v~ihGG~f~~G~~~~------~-----~~~~~~~~~~~~vivVt~nYRlg~~Gfl~~ 174 (535)
T PF00135_consen 108 CLYLNIYTPSNASSNS--KLPVMVWIHGGGFMFGSGSF------P-----PYDGASLAASKDVIVVTINYRLGAFGFLSL 174 (535)
T ss_dssp --EEEEEEETSSSSTT--SEEEEEEE--STTTSSCTTS------G-----GGHTHHHHHHHTSEEEEE----HHHHH-BS
T ss_pred HHHHhhhhcccccccc--ccceEEEeecccccCCCccc------c-----cccccccccCCCEEEEEecccccccccccc
Confidence 3778888898754432 59999999999876543210 0 1122345578899999987752 2232111
Q ss_pred CCCch-hHHHHHHHHHHHHHHHHHcC---CCCCCcEEEEEeChHHHHHHHHHHhC--CCceeEEEEccCC
Q 004475 572 LPNDR-FVEQLVSSAEAAVEEVVRRG---VADPSRIAVGGHSYGAFMTAHLLAHA--PHLFCCGIARSGS 635 (751)
Q Consensus 572 ~~~~~-~~~~~~~d~~~~v~~l~~~~---~id~~~i~l~G~S~GG~~a~~~a~~~--p~~~~~~v~~~~~ 635 (751)
..... .....+.|...|++|+++.- .=||++|-|+|+|.||..+..++... ...|..+|+.+|.
T Consensus 175 ~~~~~~~gN~Gl~Dq~~AL~WV~~nI~~FGGDp~~VTl~G~SAGa~sv~~~l~sp~~~~LF~raI~~SGs 244 (535)
T PF00135_consen 175 GDLDAPSGNYGLLDQRLALKWVQDNIAAFGGDPDNVTLFGQSAGAASVSLLLLSPSSKGLFHRAILQSGS 244 (535)
T ss_dssp SSTTSHBSTHHHHHHHHHHHHHHHHGGGGTEEEEEEEEEEETHHHHHHHHHHHGGGGTTSBSEEEEES--
T ss_pred cccccCchhhhhhhhHHHHHHHHhhhhhcccCCcceeeeeecccccccceeeeccccccccccccccccc
Confidence 11111 13456789999999999851 13899999999999999998887753 3579999999984
No 253
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=98.48 E-value=6.8e-05 Score=75.53 Aligned_cols=281 Identities=12% Similarity=0.067 Sum_probs=144.1
Q ss_pred eeEEeecCCCCCCCCcccccCCCC---cccccceeecCCCCeEEEEEeecccccccCCceeEEEEEcCCCCe-eeccCCC
Q 004475 6 GIGIHRLLPDDSLGPEKEVHGYPD---GAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEA-KPLFESP 81 (751)
Q Consensus 6 ~~~~~~~~~~~~~g~~~~l~~~~~---~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~~~~~l~i~~~~~g~~-~~lt~~~ 81 (751)
-||.|.+.+ |...+-+++-+ ...+...+|.++|+-|-= +..+.|.|++..+.+. +++.-.+
T Consensus 223 H~~Fw~~~~----~~l~k~~~~fek~ekk~Vl~v~F~engdviTg-----------DS~G~i~Iw~~~~~~~~k~~~aH~ 287 (626)
T KOG2106|consen 223 HLYFWTLRG----GSLVKRQGIFEKREKKFVLCVTFLENGDVITG-----------DSGGNILIWSKGTNRISKQVHAHD 287 (626)
T ss_pred eEEEEEccC----CceEEEeeccccccceEEEEEEEcCCCCEEee-----------cCCceEEEEeCCCceEEeEeeecC
Confidence 467788877 66555443322 235778899999987644 6668899999866552 3332112
Q ss_pred CccccceeeeeEEecCCcEEEEeecCCCCCCCCCCCCCCCCceeeccccccccchhhhhccCCccchhhhhhheeeEEEE
Q 004475 82 DICLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVL 161 (751)
Q Consensus 82 ~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 161 (751)
+++..+.-.-||+.|- ...+.+- ..++....+.-.+..+.....-|++ +....| .+-...+..|-.
T Consensus 288 -----ggv~~L~~lr~GtllS-GgKDRki---~~Wd~~y~k~r~~elPe~~G~iRtv---~e~~~d--i~vGTtrN~iL~ 353 (626)
T KOG2106|consen 288 -----GGVFSLCMLRDGTLLS-GGKDRKI---ILWDDNYRKLRETELPEQFGPIRTV---AEGKGD--ILVGTTRNFILQ 353 (626)
T ss_pred -----CceEEEEEecCccEee-cCccceE---EeccccccccccccCchhcCCeeEE---ecCCCc--EEEeeccceEEE
Confidence 2466667777886553 3222111 1111000000000000000011111 000111 111111122333
Q ss_pred EcC-CC-CceecCCCceEEeeeeCCCCceEEEEEecCCcccccccCCCceeEEEEeCCCceeeeeccCCCCCCCCCccCC
Q 004475 162 GSL-DG-TAKDFGTPAVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNS 239 (751)
Q Consensus 162 ~~~-~G-~~~~lt~~~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~ 239 (751)
-.+ +| ...-.........++-.|+..+++....+ ..+.+|+-..-+-..+...
T Consensus 354 Gt~~~~f~~~v~gh~delwgla~hps~~q~~T~gqd-------------k~v~lW~~~k~~wt~~~~d------------ 408 (626)
T KOG2106|consen 354 GTLENGFTLTVQGHGDELWGLATHPSKNQLLTCGQD-------------KHVRLWNDHKLEWTKIIED------------ 408 (626)
T ss_pred eeecCCceEEEEecccceeeEEcCCChhheeeccCc-------------ceEEEccCCceeEEEEecC------------
Confidence 333 22 22222222567788889988887765443 2566777211111122111
Q ss_pred ccCCCceeeeecCCCceEEEEEeccCCCCccccCcccceeeccCCCCCCCCceEeEeeceeEE-EEEecCCceEEEeeee
Q 004475 240 VREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFS-VSWCDDSLALVNETWY 318 (751)
Q Consensus 240 ~~~~~~~~~~spdG~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~-~~~spdg~~l~~~~~~ 318 (751)
......|.|-| . |+.-. ..+..++++.+ ......+...+..++ ++|||||..|+..+-
T Consensus 409 ---~~~~~~fhpsg-~-va~Gt------------~~G~w~V~d~e---~~~lv~~~~d~~~ls~v~ysp~G~~lAvgs~- 467 (626)
T KOG2106|consen 409 ---PAECADFHPSG-V-VAVGT------------ATGRWFVLDTE---TQDLVTIHTDNEQLSVVRYSPDGAFLAVGSH- 467 (626)
T ss_pred ---ceeEeeccCcc-e-EEEee------------ccceEEEEecc---cceeEEEEecCCceEEEEEcCCCCEEEEecC-
Confidence 13367999999 5 55533 23688999886 444444444467778 999999999998772
Q ss_pred cccceeEEEecCCCCCCcceeeeecccccccCCCCCCCeeeCCCCCEEEEee
Q 004475 319 KTSQTRTWLVCPGSKDVAPRVLFDRVFENVYSDPGSPMMTRTSTGTNVIAKI 370 (751)
Q Consensus 319 ~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~spDG~~l~~~~ 370 (751)
+....||+++.++ ..-..+-....+.... +.||+|+++|.-.+
T Consensus 468 -d~~iyiy~Vs~~g--~~y~r~~k~~gs~ith------LDwS~Ds~~~~~~S 510 (626)
T KOG2106|consen 468 -DNHIYIYRVSANG--RKYSRVGKCSGSPITH------LDWSSDSQFLVSNS 510 (626)
T ss_pred -CCeEEEEEECCCC--cEEEEeeeecCceeEE------eeecCCCceEEecc
Confidence 2233455555555 2222332222222111 77999999988877
No 254
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=98.47 E-value=0.00027 Score=69.78 Aligned_cols=215 Identities=11% Similarity=0.051 Sum_probs=110.0
Q ss_pred eeeeCCCCceEEEEEecCCcccccccCCCceeEEEEeCCCceeeeeccCCCCCCCCCccCCccCCCceeeeecCCCc-eE
Q 004475 179 AVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPS-TL 257 (751)
Q Consensus 179 ~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~spdG~~-~i 257 (751)
.+.+|.|||++++..... ...+-++|++.++...-.+.|+... .-|-|+. +.
T Consensus 99 ~~~ls~dgk~~~V~N~TP-----------a~SVtVVDl~~~kvv~ei~~PGC~~----------------iyP~~~~~F~ 151 (342)
T PF06433_consen 99 MFALSADGKFLYVQNFTP-----------ATSVTVVDLAAKKVVGEIDTPGCWL----------------IYPSGNRGFS 151 (342)
T ss_dssp GEEE-TTSSEEEEEEESS-----------SEEEEEEETTTTEEEEEEEGTSEEE----------------EEEEETTEEE
T ss_pred ceEEccCCcEEEEEccCC-----------CCeEEEEECCCCceeeeecCCCEEE----------------EEecCCCceE
Confidence 578999999999875442 4578899999887655444444422 1122211 12
Q ss_pred EEEEeccCCCCccccCcccceeeccCCCCCCCCceEeEe-----eceeEE-EEEecCCceEEEeeeecccceeEEEecCC
Q 004475 258 YWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHK-----LDLRFS-VSWCDDSLALVNETWYKTSQTRTWLVCPG 331 (751)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~-----~~~~~~-~~~spdg~~l~~~~~~~~~~~~l~~~~~~ 331 (751)
..|. .+.+..+.++ .+|+..+..+. .+..+. +.++.++.+++|.+ ....||.+++.
T Consensus 152 ~lC~-------------DGsl~~v~Ld-~~Gk~~~~~t~~F~~~~dp~f~~~~~~~~~~~~~F~S----y~G~v~~~dls 213 (342)
T PF06433_consen 152 MLCG-------------DGSLLTVTLD-ADGKEAQKSTKVFDPDDDPLFEHPAYSRDGGRLYFVS----YEGNVYSADLS 213 (342)
T ss_dssp EEET-------------TSCEEEEEET-STSSEEEEEEEESSTTTS-B-S--EEETTTTEEEEEB----TTSEEEEEEET
T ss_pred EEec-------------CCceEEEEEC-CCCCEeEeeccccCCCCcccccccceECCCCeEEEEe----cCCEEEEEecc
Confidence 2221 2344444442 11222211111 111223 67888887788855 34689999988
Q ss_pred CCCCcceeeee------cccccccCCCCCCCeeeCCCCCEEEEeeeecCCcceEEEEccCCCCCCCCCceeEEEecCCCc
Q 004475 332 SKDVAPRVLFD------RVFENVYSDPGSPMMTRTSTGTNVIAKIKKENDEQIYILLNGRGFTPEGNIPFLDLFDINTGS 405 (751)
Q Consensus 332 ~~~~~~~~l~~------~~~~~~~~~~~~~~~~~spDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~ 405 (751)
+. .++.... .....-|--.+-..+++.+....|++.-+ .+...++...-..||.+|+++++
T Consensus 214 g~--~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh-----------~g~~gsHKdpgteVWv~D~~t~k 280 (342)
T PF06433_consen 214 GD--SAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRLYVLMH-----------QGGEGSHKDPGTEVWVYDLKTHK 280 (342)
T ss_dssp TS--SEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEEEEEEE-----------E--TT-TTS-EEEEEEEETTTTE
T ss_pred CC--cccccCcccccCccccccCcCCcceeeeeeccccCeEEEEec-----------CCCCCCccCCceEEEEEECCCCe
Confidence 75 2222211 11111111112222455555545544332 12223344556689999999987
Q ss_pred eeEEeeccchhhhhceeeeecCCcceeeccCCCEEEEEEecCCCCCeEEEEEcCCCceeE
Q 004475 406 KERIWESNREKYFETAVALVFGQGEEDINLNQLKILTSKESKTEITQYHILSWPLKKSSQ 465 (751)
Q Consensus 406 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~l~~~~~~~g~~~~ 465 (751)
...-+..+.. . ..+++|-|.+=++|..... -..|++.|+.+|+..+
T Consensus 281 rv~Ri~l~~~-----~-------~Si~Vsqd~~P~L~~~~~~--~~~l~v~D~~tGk~~~ 326 (342)
T PF06433_consen 281 RVARIPLEHP-----I-------DSIAVSQDDKPLLYALSAG--DGTLDVYDAATGKLVR 326 (342)
T ss_dssp EEEEEEEEEE-----E-------SEEEEESSSS-EEEEEETT--TTEEEEEETTT--EEE
T ss_pred EEEEEeCCCc-----c-------ceEEEccCCCcEEEEEcCC--CCeEEEEeCcCCcEEe
Confidence 6544443221 1 1246777888788776442 3679999999997654
No 255
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=98.47 E-value=5.2e-06 Score=83.15 Aligned_cols=235 Identities=14% Similarity=0.163 Sum_probs=142.7
Q ss_pred cccccCCCCcccccceeecCCCCeEEEEEeecccccccCCceeEEEEEcCCCC-eeeccCCCCccccceeeeeEEecCCc
Q 004475 21 EKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGE-AKPLFESPDICLNAVFGSFVWVNNST 99 (751)
Q Consensus 21 ~~~l~~~~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~~~~~l~i~~~~~g~-~~~lt~~~~~~~~~~~~~~~wspDg~ 99 (751)
.+++..|..+.-+-..++|-+-++++. .+++.|.|+++...+ ..++....-..-...++.+..+|||+
T Consensus 410 arq~~tL~HGEvVcAvtIS~~trhVyT-----------gGkgcVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~pdgr 478 (705)
T KOG0639|consen 410 ARQINTLAHGEVVCAVTISNPTRHVYT-----------GGKGCVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLLPDGR 478 (705)
T ss_pred HHhhhhhccCcEEEEEEecCCcceeEe-----------cCCCeEEEeeccCCCCCCccccccccCcccceeeeEecCCCc
Confidence 344444556655667889988888866 566777777875532 23332222110011367889999999
Q ss_pred EEEEeecCCCCCCCCCCCCCCCCceeeccccccccchhhhhccCCccchhhhhhheeeEEEEEcCCCCc----eecCCC-
Q 004475 100 LLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSLDGTA----KDFGTP- 174 (751)
Q Consensus 100 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~G~~----~~lt~~- 174 (751)
.|+...+. +.|-+||+.... ..|+..
T Consensus 479 tLivGGea-------------------------------------------------stlsiWDLAapTprikaeltssa 509 (705)
T KOG0639|consen 479 TLIVGGEA-------------------------------------------------STLSIWDLAAPTPRIKAELTSSA 509 (705)
T ss_pred eEEecccc-------------------------------------------------ceeeeeeccCCCcchhhhcCCcc
Confidence 99887221 567777884421 234444
Q ss_pred ceEEeeeeCCCCceEEEEEecCCcccccccCCCceeEEEEeCCCcee-eeeccCCCCCCCCCccCCccCCCceeeeecCC
Q 004475 175 AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLV-RELCDLPPAEDIPVCYNSVREGMRSISWRADK 253 (751)
Q Consensus 175 ~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~spdG 253 (751)
.....++.|||.|.. |.... ...|.+||+..... +++ .....+...+..|+||
T Consensus 510 paCyALa~spDakvc-Fsccs------------dGnI~vwDLhnq~~Vrqf-------------qGhtDGascIdis~dG 563 (705)
T KOG0639|consen 510 PACYALAISPDAKVC-FSCCS------------DGNIAVWDLHNQTLVRQF-------------QGHTDGASCIDISKDG 563 (705)
T ss_pred hhhhhhhcCCcccee-eeecc------------CCcEEEEEcccceeeecc-------------cCCCCCceeEEecCCC
Confidence 456688999999854 44433 24688999976543 333 2233456689999999
Q ss_pred CceEEEEEeccCCCCccccCcccceeeccCCCCCCCCceEeEee--ceeEE-EEEecCCceEEEeeeecccceeEEEecC
Q 004475 254 PSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKL--DLRFS-VSWCDDSLALVNETWYKTSQTRTWLVCP 330 (751)
Q Consensus 254 ~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~--~~~~~-~~~spdg~~l~~~~~~~~~~~~l~~~~~ 330 (751)
.+ | |+.. ..+.+..||+. +.+.+.+. .-.+. +.++|.+.||+..-. ++.+|+...
T Consensus 564 tk-l-WTGG-----------lDntvRcWDlr-----egrqlqqhdF~SQIfSLg~cP~~dWlavGMe----ns~vevlh~ 621 (705)
T KOG0639|consen 564 TK-L-WTGG-----------LDNTVRCWDLR-----EGRQLQQHDFSSQIFSLGYCPTGDWLAVGME----NSNVEVLHT 621 (705)
T ss_pred ce-e-ecCC-----------Cccceeehhhh-----hhhhhhhhhhhhhheecccCCCccceeeecc----cCcEEEEec
Confidence 87 3 3221 23577778874 22233322 23344 778999999988652 246777776
Q ss_pred CCCCCcceeeeecccccccCCCCCCCeeeCCCCCEEEEeeee
Q 004475 331 GSKDVAPRVLFDRVFENVYSDPGSPMMTRTSTGTNVIAKIKK 372 (751)
Q Consensus 331 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~spDG~~l~~~~~~ 372 (751)
.+. +.-+|..+..- +.+ +.|++=|+|++...++
T Consensus 622 skp--~kyqlhlheSc-VLS------lKFa~cGkwfvStGkD 654 (705)
T KOG0639|consen 622 SKP--EKYQLHLHESC-VLS------LKFAYCGKWFVSTGKD 654 (705)
T ss_pred CCc--cceeecccccE-EEE------EEecccCceeeecCch
Confidence 663 44455433211 122 7799999998877744
No 256
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=98.45 E-value=7.7e-06 Score=79.99 Aligned_cols=223 Identities=15% Similarity=0.199 Sum_probs=125.0
Q ss_pred cccceeecCCCCeEEEEEeecccccccCCceeEEEEEcCCCCeeeccCCCCccccceeeeeEEecCCcEEEEeecCCCCC
Q 004475 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRD 111 (751)
Q Consensus 32 ~~~~p~~SPDG~~iaf~~~~~~~~~~~~~~~~l~i~~~~~g~~~~lt~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~ 111 (751)
.+...+|.|+|++|...+. .+...|| +..+=..+.+-.... ..++.+.||++|.+++.....
T Consensus 98 ~V~~v~WtPeGRRLltgs~--------SGEFtLW--Ng~~fnFEtilQaHD----s~Vr~m~ws~~g~wmiSgD~g---- 159 (464)
T KOG0284|consen 98 PVNVVRWTPEGRRLLTGSQ--------SGEFTLW--NGTSFNFETILQAHD----SPVRTMKWSHNGTWMISGDKG---- 159 (464)
T ss_pred ceeeEEEcCCCceeEeecc--------cccEEEe--cCceeeHHHHhhhhc----ccceeEEEccCCCEEEEcCCC----
Confidence 5778999999999998643 4445555 422211112211111 137789999999998865211
Q ss_pred CCCCCCCCCCCceeeccccccccchhhhhccCCccchhhhhhheeeEEEEEcCCCC-ceecCC-C-ceEEeeeeCCCCce
Q 004475 112 PPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSLDGT-AKDFGT-P-AVYTAVEPSPDQKY 188 (751)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~G~-~~~lt~-~-~~~~~~~~SpDG~~ 188 (751)
.-|..++.+=. ++.+.. + ..+.+++|||....
T Consensus 160 ---------------------------------------------G~iKyWqpnmnnVk~~~ahh~eaIRdlafSpnDsk 194 (464)
T KOG0284|consen 160 ---------------------------------------------GMIKYWQPNMNNVKIIQAHHAEAIRDLAFSPNDSK 194 (464)
T ss_pred ---------------------------------------------ceEEecccchhhhHHhhHhhhhhhheeccCCCCce
Confidence 23444444221 111211 2 56789999995544
Q ss_pred EEEEEecCCcccccccCCCceeEEEEeCC-CceeeeeccCCCCCCCCCccCCccCCCceeeeecCCCceEEEEEeccCCC
Q 004475 189 VLITSMHRPYSYKVPCARFSQKVQVWTTD-GKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGD 267 (751)
Q Consensus 189 i~~~~~~~~~~~~~~~~~~~~~l~~~d~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~spdG~~~i~~~~~~~~~~ 267 (751)
++-.+.+ +.|.+||.. .++.+.|..+- ..++++.|+|.... |+..+
T Consensus 195 F~t~SdD-------------g~ikiWdf~~~kee~vL~GHg-------------wdVksvdWHP~kgL-iasgs------ 241 (464)
T KOG0284|consen 195 FLTCSDD-------------GTIKIWDFRMPKEERVLRGHG-------------WDVKSVDWHPTKGL-IASGS------ 241 (464)
T ss_pred eEEecCC-------------CeEEEEeccCCchhheeccCC-------------CCcceeccCCccce-eEEcc------
Confidence 4433332 367889885 44445553222 23568899999875 44432
Q ss_pred CccccCcccceeeccCCCCCCCCceEeEeeceeEE-EEEecCCceEEEeeeecccceeEEEecCCCCCCcceeeeecccc
Q 004475 268 ANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFS-VSWCDDSLALVNETWYKTSQTRTWLVCPGSKDVAPRVLFDRVFE 346 (751)
Q Consensus 268 ~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~-~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~ 346 (751)
..+-+-++|. .++.....+......+. +.|+|+|.+|+..+.. ..+-++|..+- .+ .........
T Consensus 242 ------kDnlVKlWDp--rSg~cl~tlh~HKntVl~~~f~~n~N~Llt~skD----~~~kv~DiR~m-kE-l~~~r~Hkk 307 (464)
T KOG0284|consen 242 ------KDNLVKLWDP--RSGSCLATLHGHKNTVLAVKFNPNGNWLLTGSKD----QSCKVFDIRTM-KE-LFTYRGHKK 307 (464)
T ss_pred ------CCceeEeecC--CCcchhhhhhhccceEEEEEEcCCCCeeEEccCC----ceEEEEehhHh-HH-HHHhhcchh
Confidence 1125666664 34555555555555566 8999999999876632 24445555432 11 112222223
Q ss_pred cccCCCCCCCeeeCCCCCEEEEee
Q 004475 347 NVYSDPGSPMMTRTSTGTNVIAKI 370 (751)
Q Consensus 347 ~~~~~~~~~~~~~spDG~~l~~~~ 370 (751)
++.. ..|+|=...|+...
T Consensus 308 dv~~------~~WhP~~~~lftsg 325 (464)
T KOG0284|consen 308 DVTS------LTWHPLNESLFTSG 325 (464)
T ss_pred hhee------eccccccccceeec
Confidence 3333 66888777665544
No 257
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=98.44 E-value=6.5e-05 Score=75.97 Aligned_cols=240 Identities=13% Similarity=0.106 Sum_probs=130.6
Q ss_pred cccceeecCCCCeEEEEEeecccccccCCceeEEEEEcCCCCeeeccCCCCccccceeeeeEEecCCcEEEEeecCCCCC
Q 004475 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRD 111 (751)
Q Consensus 32 ~~~~p~~SPDG~~iaf~~~~~~~~~~~~~~~~l~i~~~~~g~~~~lt~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~ 111 (751)
.+...+|||-|++|++.- ...|-++.-..+. .|+.... +.+..+.+||.+++|..-+......
T Consensus 34 p~~~~~~SP~G~~l~~~~-----------~~~V~~~~g~~~~--~l~~~~~----~~V~~~~fSP~~kYL~tw~~~pi~~ 96 (561)
T COG5354 34 PVAYVSESPLGTYLFSEH-----------AAGVECWGGPSKA--KLVRFRH----PDVKYLDFSPNEKYLVTWSREPIIE 96 (561)
T ss_pred chhheeecCcchheehhh-----------ccceEEccccchh--heeeeec----CCceecccCcccceeeeeccCCccC
Confidence 577899999999998832 2333333322222 2211121 1367789999999997664433221
Q ss_pred CCCCCCCCCCCceeeccccccccchhhhhccCCccchhhhhhheeeEEEEEcC-CCCceecCC----CceEE-eeeeCCC
Q 004475 112 PPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DGTAKDFGT----PAVYT-AVEPSPD 185 (751)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~G~~~~lt~----~~~~~-~~~~SpD 185 (751)
. + ....|.+ ...++.++|. +|.+..--. ....+ -..||-|
T Consensus 97 p-e---~e~sp~~------------------------------~~n~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~ 142 (561)
T COG5354 97 P-E---IEISPFT------------------------------SKNNVFVWDIASGMIVFSFNGISQPYLGWPVLKFSID 142 (561)
T ss_pred h-h---hccCCcc------------------------------ccCceeEEeccCceeEeeccccCCcccccceeeeeec
Confidence 0 0 0000000 1137888888 664322111 11122 5779999
Q ss_pred CceEEEEEecCCcccccccCCCceeEEEEeCCCceeeeeccCCCCCCCCCccCCccCCCceeeeecCCCce--EEEEEec
Q 004475 186 QKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPST--LYWVEAQ 263 (751)
Q Consensus 186 G~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~spdG~~~--i~~~~~~ 263 (751)
.++++... ..+++++++ ++...+ ++..... ..+++.++|||.|++- .+|+- +
T Consensus 143 D~y~ARvv--------------~~sl~i~e~-t~n~~~---~p~~~lr-------~~gi~dFsisP~~n~~~la~~tP-E 196 (561)
T COG5354 143 DKYVARVV--------------GSSLYIHEI-TDNIEE---HPFKNLR-------PVGILDFSISPEGNHDELAYWTP-E 196 (561)
T ss_pred chhhhhhc--------------cCeEEEEec-CCcccc---Cchhhcc-------ccceeeEEecCCCCCceEEEEcc-c
Confidence 99887652 346888887 544432 2222111 2567899999997652 23321 1
Q ss_pred cCCCCccccCcccceeeccCCCCCCCCceEeEee--ceeEE-EEEecCCceEEEeeeec-----c--cceeEEEecCCCC
Q 004475 264 DRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKL--DLRFS-VSWCDDSLALVNETWYK-----T--SQTRTWLVCPGSK 333 (751)
Q Consensus 264 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~--~~~~~-~~~spdg~~l~~~~~~~-----~--~~~~l~~~~~~~~ 333 (751)
-.+ ....+.++.+. .+ ....+.. ...-. +.|-+.|++|++..... + +.+.||+.+....
T Consensus 197 k~~-------kpa~~~i~sIp-~~---s~l~tk~lfk~~~~qLkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e~ 265 (561)
T COG5354 197 KLN-------KPAMVRILSIP-KN---SVLVTKNLFKVSGVQLKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRITER 265 (561)
T ss_pred cCC-------CCcEEEEEEcc-CC---CeeeeeeeEeecccEEEEecCCceEEEEEEEeeecccceeccceEEEEeeccc
Confidence 111 11345555552 11 1111222 22222 89999999988766432 1 3468999888753
Q ss_pred CCcceee--eecccccccCCCCCCCeeeCCCCCEEEEee
Q 004475 334 DVAPRVL--FDRVFENVYSDPGSPMMTRTSTGTNVIAKI 370 (751)
Q Consensus 334 ~~~~~~l--~~~~~~~~~~~~~~~~~~~spDG~~l~~~~ 370 (751)
..+.. .....++ ++|+|+++.++..+
T Consensus 266 --~i~V~~~~~~pVhd---------f~W~p~S~~F~vi~ 293 (561)
T COG5354 266 --SIPVEKDLKDPVHD---------FTWEPLSSRFAVIS 293 (561)
T ss_pred --ccceecccccccee---------eeecccCCceeEEe
Confidence 22222 2233344 88999999888777
No 258
>PF06057 VirJ: Bacterial virulence protein (VirJ); InterPro: IPR010333 This entry contains several bacterial VirJ virulence proteins. VirJ is thought to be involved in the type IV secretion system. It is thought that the substrate proteins localised to the periplasm may associate with the pilus in a manner that is mediated by VirJ, and suggest a two-step process for type IV secretion in Agrobacterium [].
Probab=98.44 E-value=4.2e-06 Score=75.09 Aligned_cols=170 Identities=16% Similarity=0.128 Sum_probs=104.4
Q ss_pred cCCCCchHHHHHHhCCeEEEEcCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHH
Q 004475 539 FSGMTPTSSLIFLARRFAVLAGPSIPIIGEGDKLPNDRFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHL 618 (751)
Q Consensus 539 ~~~~~~~~~~~~~~~G~~v~~~~~~~~~g~g~~~~~~~~~~~~~~d~~~~v~~l~~~~~id~~~i~l~G~S~GG~~a~~~ 618 (751)
|.......+..|+++|+.|+..|...+. ......++...|+.+++++..++.. ..+++|+|.|+|+-+...+
T Consensus 14 w~~~d~~~a~~l~~~G~~VvGvdsl~Yf------w~~rtP~~~a~Dl~~~i~~y~~~w~--~~~vvLiGYSFGADvlP~~ 85 (192)
T PF06057_consen 14 WRDLDKQIAEALAKQGVPVVGVDSLRYF------WSERTPEQTAADLARIIRHYRARWG--RKRVVLIGYSFGADVLPFI 85 (192)
T ss_pred chhhhHHHHHHHHHCCCeEEEechHHHH------hhhCCHHHHHHHHHHHHHHHHHHhC--CceEEEEeecCCchhHHHH
Confidence 3344456788999999999985543222 1223456778999999999888743 5799999999999998888
Q ss_pred HHhCCC----ceeEEEEccCCCC--CCCCccCcccccccchhhHHHHHhcCcccccCCCC-CCEEEEEcCCCCCCCCChH
Q 004475 619 LAHAPH----LFCCGIARSGSYN--KTLTPFGFQTEFRTLWEATNVYIEMSPITHANKIK-KPILIIHGEVDDKVGLFPM 691 (751)
Q Consensus 619 a~~~p~----~~~~~v~~~~~~d--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~P~li~~G~~D~~vp~~~~ 691 (751)
..+-|. +++.++++++... +.....++...... . ..+.+...+.++. .|++.+.|++|....||
T Consensus 86 ~nrLp~~~r~~v~~v~Ll~p~~~~dFeihv~~wlg~~~~-----~--~~~~~~pei~~l~~~~v~CiyG~~E~d~~cp-- 156 (192)
T PF06057_consen 86 YNRLPAALRARVAQVVLLSPSTTADFEIHVSGWLGMGGD-----D--AAYPVIPEIAKLPPAPVQCIYGEDEDDSLCP-- 156 (192)
T ss_pred HhhCCHHHHhheeEEEEeccCCcceEEEEhhhhcCCCCC-----c--ccCCchHHHHhCCCCeEEEEEcCCCCCCcCc--
Confidence 877664 5778888877532 11111111100000 0 0112223344554 58999999887544322
Q ss_pred HHHHHHHHHHhCCCcEEEEEeCCCCCcCCccccHHHHHHHHHHHHH
Q 004475 692 QAERFFDALKGHGALSRLVLLPFEHHVYAARENVMHVIWETDRWLQ 737 (751)
Q Consensus 692 ~~~~~~~~l~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~fl~ 737 (751)
.+.. ..++.+..||+.|. .++.....+.|++-++
T Consensus 157 -------~l~~--~~~~~i~lpGgHHf---d~dy~~La~~Il~~l~ 190 (192)
T PF06057_consen 157 -------SLRQ--PGVEVIALPGGHHF---DGDYDALAKRILDALK 190 (192)
T ss_pred -------cccC--CCcEEEEcCCCcCC---CCCHHHHHHHHHHHHh
Confidence 2333 35788999997664 3344455555555543
No 259
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=98.42 E-value=7.8e-06 Score=81.89 Aligned_cols=243 Identities=12% Similarity=0.107 Sum_probs=146.5
Q ss_pred eeEEeecCCCCCCCCcccccCCCC---cccccceeecCCCCeEEEEEeecccccccCCceeEEEEEcCCCCee---eccC
Q 004475 6 GIGIHRLLPDDSLGPEKEVHGYPD---GAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAK---PLFE 79 (751)
Q Consensus 6 ~~~~~~~~~~~~~g~~~~l~~~~~---~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~~~~~l~i~~~~~g~~~---~lt~ 79 (751)
.|+|||++.- |....+..|+. +..++.-.++|||+.|..- .....|-|+|++.-..+ +||.
T Consensus 441 cVKVWdis~p---g~k~PvsqLdcl~rdnyiRSckL~pdgrtLivG----------GeastlsiWDLAapTprikaelts 507 (705)
T KOG0639|consen 441 CVKVWDISQP---GNKSPVSQLDCLNRDNYIRSCKLLPDGRTLIVG----------GEASTLSIWDLAAPTPRIKAELTS 507 (705)
T ss_pred eEEEeeccCC---CCCCccccccccCcccceeeeEecCCCceEEec----------cccceeeeeeccCCCcchhhhcCC
Confidence 5899999882 33334444433 3467788899999999872 23466777777654332 2332
Q ss_pred CCCccccceeeeeEEecCCcEEEEeecCCCCCCCCCCCCCCCCceeeccccccccchhhhhccCCccchhhhhhheeeEE
Q 004475 80 SPDICLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQL 159 (751)
Q Consensus 80 ~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 159 (751)
... ....++.|||.+ |+|.... .+.|
T Consensus 508 sap-----aCyALa~spDak-vcFsccs------------------------------------------------dGnI 533 (705)
T KOG0639|consen 508 SAP-----ACYALAISPDAK-VCFSCCS------------------------------------------------DGNI 533 (705)
T ss_pred cch-----hhhhhhcCCccc-eeeeecc------------------------------------------------CCcE
Confidence 222 234678999997 5555331 1578
Q ss_pred EEEcC-CC-CceecCCC-ceEEeeeeCCCCceEEEEEecCCcccccccCCCceeEEEEeCCCceeeeeccCCCCCCCCCc
Q 004475 160 VLGSL-DG-TAKDFGTP-AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVC 236 (751)
Q Consensus 160 ~~~~~-~G-~~~~lt~~-~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~ 236 (751)
.++|+ +. .++++..+ .+...+..|+||..|+.-.. .+.+..||+..+ +++-.+.+.
T Consensus 534 ~vwDLhnq~~VrqfqGhtDGascIdis~dGtklWTGGl-------------DntvRcWDlreg--rqlqqhdF~------ 592 (705)
T KOG0639|consen 534 AVWDLHNQTLVRQFQGHTDGASCIDISKDGTKLWTGGL-------------DNTVRCWDLREG--RQLQQHDFS------ 592 (705)
T ss_pred EEEEcccceeeecccCCCCCceeEEecCCCceeecCCC-------------ccceeehhhhhh--hhhhhhhhh------
Confidence 88899 55 55666655 77889999999999986433 346778998754 333333333
Q ss_pred cCCccCCCceeeeecCCCceEEEEEeccCCCCccccCcccceeeccCCCCCCCCceEeEeeceeEE-EEEecCCceEEEe
Q 004475 237 YNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFS-VSWCDDSLALVNE 315 (751)
Q Consensus 237 ~~~~~~~~~~~~~spdG~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~-~~~spdg~~l~~~ 315 (751)
.++..+...|+|.++++-++ .+++.++... +.....+...+--+- +.|++.|+|++-+
T Consensus 593 -----SQIfSLg~cP~~dWlavGMe-------------ns~vevlh~s---kp~kyqlhlheScVLSlKFa~cGkwfvSt 651 (705)
T KOG0639|consen 593 -----SQIFSLGYCPTGDWLAVGME-------------NSNVEVLHTS---KPEKYQLHLHESCVLSLKFAYCGKWFVST 651 (705)
T ss_pred -----hhheecccCCCccceeeecc-------------cCcEEEEecC---CccceeecccccEEEEEEecccCceeeec
Confidence 23447788999999444433 2456666653 444455555554444 8999999988754
Q ss_pred eeecccceeEEEecCCCCCCcceeeeecccccccCCCCCCCeeeCCCCCEEEEee
Q 004475 316 TWYKTSQTRTWLVCPGSKDVAPRVLFDRVFENVYSDPGSPMMTRTSTGTNVIAKI 370 (751)
Q Consensus 316 ~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~spDG~~l~~~~ 370 (751)
. .+.-...|+...... .-++-+. ..+.. -..|.|.++|+..+
T Consensus 652 G--kDnlLnawrtPyGas---iFqskE~--SsVls------CDIS~ddkyIVTGS 693 (705)
T KOG0639|consen 652 G--KDNLLNAWRTPYGAS---IFQSKES--SSVLS------CDISFDDKYIVTGS 693 (705)
T ss_pred C--chhhhhhccCccccc---eeecccc--Cccee------eeeccCceEEEecC
Confidence 4 122234565554331 1111111 11111 22578888887766
No 260
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=98.41 E-value=1.5e-05 Score=78.77 Aligned_cols=212 Identities=17% Similarity=0.135 Sum_probs=121.7
Q ss_pred eeEEeecCCCCCCCCcccccCCCCcccccceeec-CCCCeEEEEEeecccccccCCceeEEEEEcCCCCeeeccCCCCcc
Q 004475 6 GIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWS-PDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDIC 84 (751)
Q Consensus 6 ~~~~~~~~~~~~~g~~~~l~~~~~~~~~~~p~~S-PDG~~iaf~~~~~~~~~~~~~~~~l~i~~~~~g~~~~lt~~~~~~ 84 (751)
.|+.++..+ ++.+.+. ++. .....+. +|| .|+++. ...+.++++++++.+.+.......
T Consensus 23 ~i~~~~~~~----~~~~~~~-~~~---~~G~~~~~~~g-~l~v~~-----------~~~~~~~d~~~g~~~~~~~~~~~~ 82 (246)
T PF08450_consen 23 RIYRVDPDT----GEVEVID-LPG---PNGMAFDRPDG-RLYVAD-----------SGGIAVVDPDTGKVTVLADLPDGG 82 (246)
T ss_dssp EEEEEETTT----TEEEEEE-SSS---EEEEEEECTTS-EEEEEE-----------TTCEEEEETTTTEEEEEEEEETTC
T ss_pred EEEEEECCC----CeEEEEe-cCC---CceEEEEccCC-EEEEEE-----------cCceEEEecCCCcEEEEeeccCCC
Confidence 577777766 6655544 222 3344555 675 444432 134455698899877776542111
Q ss_pred -ccceeeeeEEecCCcEEEEeecCCCCCCCCCCCCCCCCceeeccccccccchhhhhccCCccchhhhhhheeeEEEEEc
Q 004475 85 -LNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGS 163 (751)
Q Consensus 85 -~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 163 (751)
-....+.++..|||+ |+|+......... .....||+++
T Consensus 83 ~~~~~~ND~~vd~~G~-ly~t~~~~~~~~~----------------------------------------~~~g~v~~~~ 121 (246)
T PF08450_consen 83 VPFNRPNDVAVDPDGN-LYVTDSGGGGASG----------------------------------------IDPGSVYRID 121 (246)
T ss_dssp SCTEEEEEEEE-TTS--EEEEEECCBCTTC----------------------------------------GGSEEEEEEE
T ss_pred cccCCCceEEEcCCCC-EEEEecCCCcccc----------------------------------------ccccceEEEC
Confidence 111356889999998 7777443221100 0015799999
Q ss_pred CCCCceecCCC-ceEEeeeeCCCCceEEEEEecCCcccccccCCCceeEEEEeCC--Cce---eeeeccCCCCCCCCCcc
Q 004475 164 LDGTAKDFGTP-AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTD--GKL---VRELCDLPPAEDIPVCY 237 (751)
Q Consensus 164 ~~G~~~~lt~~-~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~--~~~---~~~l~~~~~~~~~~~~~ 237 (751)
.+|+.+.+... .....++|||||+.|++.... ...|+.++.+ +.. .+.+...+...
T Consensus 122 ~~~~~~~~~~~~~~pNGi~~s~dg~~lyv~ds~------------~~~i~~~~~~~~~~~~~~~~~~~~~~~~~------ 183 (246)
T PF08450_consen 122 PDGKVTVVADGLGFPNGIAFSPDGKTLYVADSF------------NGRIWRFDLDADGGELSNRRVFIDFPGGP------ 183 (246)
T ss_dssp TTSEEEEEEEEESSEEEEEEETTSSEEEEEETT------------TTEEEEEEEETTTCCEEEEEEEEE-SSSS------
T ss_pred CCCeEEEEecCcccccceEECCcchheeecccc------------cceeEEEeccccccceeeeeeEEEcCCCC------
Confidence 98876666554 555689999999999886443 3468888885 331 12222222111
Q ss_pred CCccCCCceeeeecCCCceEEEEEeccCCCCccccCcccceeeccCCCCCCCCceEeEeeceeEE-EEE-ecCCceEEEe
Q 004475 238 NSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFS-VSW-CDDSLALVNE 315 (751)
Q Consensus 238 ~~~~~~~~~~~~spdG~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~-~~~-spdg~~l~~~ 315 (751)
..+.++++..+|+ |+.+.. ..+.|++++.+ +.....+.-...... ++| .+|.+.|+.+
T Consensus 184 ----g~pDG~~vD~~G~--l~va~~-----------~~~~I~~~~p~---G~~~~~i~~p~~~~t~~~fgg~~~~~L~vT 243 (246)
T PF08450_consen 184 ----GYPDGLAVDSDGN--LWVADW-----------GGGRIVVFDPD---GKLLREIELPVPRPTNCAFGGPDGKTLYVT 243 (246)
T ss_dssp ----CEEEEEEEBTTS---EEEEEE-----------TTTEEEEEETT---SCEEEEEE-SSSSEEEEEEESTTSSEEEEE
T ss_pred ----cCCCcceEcCCCC--EEEEEc-----------CCCEEEEECCC---ccEEEEEcCCCCCEEEEEEECCCCCEEEEE
Confidence 1245789999997 444421 23588888875 544444433323555 788 4777877765
Q ss_pred e
Q 004475 316 T 316 (751)
Q Consensus 316 ~ 316 (751)
+
T Consensus 244 t 244 (246)
T PF08450_consen 244 T 244 (246)
T ss_dssp E
T ss_pred e
Confidence 5
No 261
>COG1073 Hydrolases of the alpha/beta superfamily [General function prediction only]
Probab=98.41 E-value=1.8e-06 Score=88.23 Aligned_cols=78 Identities=24% Similarity=0.452 Sum_probs=61.8
Q ss_pred HHhcCcccccCCCC-CCEEEEEcCCCCCCCCChHHHHHHHHHHHhCCCcEEEEEeCCCCCcCCcccc--HHHHHHHHHHH
Q 004475 659 YIEMSPITHANKIK-KPILIIHGEVDDKVGLFPMQAERFFDALKGHGALSRLVLLPFEHHVYAAREN--VMHVIWETDRW 735 (751)
Q Consensus 659 ~~~~~~~~~~~~~~-~P~li~~G~~D~~vp~~~~~~~~~~~~l~~~~~~~~~~~~~~~~H~~~~~~~--~~~~~~~~~~f 735 (751)
+....+...+.++. +|+|++||..|..|| ...+..++...... +....++++++|....... ..+.+..+.+|
T Consensus 218 ~~~~d~~~~~~~i~~~P~l~~~G~~D~~vp--~~~~~~~~~~~~~~--~~~~~~~~~~~H~~~~~~~~~~~~~~~~~~~f 293 (299)
T COG1073 218 LLLLDPFDDAEKISPRPVLLVHGERDEVVP--LRDAEDLYEAARER--PKKLLFVPGGGHIDLYDNPPAVEQALDKLAEF 293 (299)
T ss_pred hccCcchhhHhhcCCcceEEEecCCCcccc--hhhhHHHHhhhccC--CceEEEecCCccccccCccHHHHHHHHHHHHH
Confidence 45555666666776 799999999999999 89999999888764 5678888999998764232 34788999999
Q ss_pred HHHHh
Q 004475 736 LQKYC 740 (751)
Q Consensus 736 l~~~l 740 (751)
|.+++
T Consensus 294 ~~~~l 298 (299)
T COG1073 294 LERHL 298 (299)
T ss_pred HHHhc
Confidence 99875
No 262
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=98.40 E-value=2.2e-05 Score=74.60 Aligned_cols=186 Identities=12% Similarity=0.114 Sum_probs=97.4
Q ss_pred EEEEEcC-CCCceec---CCC----ceEEeeeeCCCCceEEEEEecCCcccccccCCCceeEEEEeCC-CceeeeeccC-
Q 004475 158 QLVLGSL-DGTAKDF---GTP----AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTD-GKLVRELCDL- 227 (751)
Q Consensus 158 ~l~~~~~-~G~~~~l---t~~----~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~-~~~~~~l~~~- 227 (751)
-|.++|. +|+.+.- -++ ....++.|||||.+|+.-- +..|.++|+. .+.-..+...
T Consensus 134 PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaGy--------------krcirvFdt~RpGr~c~vy~t~ 199 (406)
T KOG2919|consen 134 PIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAGY--------------KRCIRVFDTSRPGRDCPVYTTV 199 (406)
T ss_pred ceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEeecc--------------cceEEEeeccCCCCCCcchhhh
Confidence 5777888 8854422 112 2345889999999997531 3457778773 3322211111
Q ss_pred C-CCCCCCCccCCccCCCceeeeecCCCceEEEEEeccCCCCccccCcccceeeccCCCCCCCCceEeEeeceeEE-EEE
Q 004475 228 P-PAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFS-VSW 305 (751)
Q Consensus 228 ~-~~~~~~~~~~~~~~~~~~~~~spdG~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~-~~~ 305 (751)
. +..+. ..-+..+++||-....+++-+ -..+-.||..+- .+....+....+.+. +.|
T Consensus 200 ~~~k~gq-------~giisc~a~sP~~~~~~a~gs----------Y~q~~giy~~~~----~~pl~llggh~gGvThL~~ 258 (406)
T KOG2919|consen 200 TKGKFGQ-------KGIISCFAFSPMDSKTLAVGS----------YGQRVGIYNDDG----RRPLQLLGGHGGGVTHLQW 258 (406)
T ss_pred hcccccc-------cceeeeeeccCCCCcceeeec----------ccceeeeEecCC----CCceeeecccCCCeeeEEe
Confidence 1 01000 011357899998886455532 112234555442 223344556677788 999
Q ss_pred ecCCceEEEeeeecccceeEEEecCCCCCCcceeeeecccccccCCCCCCCeeeCCCCCEEEEeeeecCCcceEEEEccC
Q 004475 306 CDDSLALVNETWYKTSQTRTWLVCPGSKDVAPRVLFDRVFENVYSDPGSPMMTRTSTGTNVIAKIKKENDEQIYILLNGR 385 (751)
Q Consensus 306 spdg~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~spDG~~l~~~~~~~~~~~~~~~~~~~ 385 (751)
.+||..|+..+.. .. .|...|+... ..+..-......+.. ..-.+-..|+|++|+-..
T Consensus 259 ~edGn~lfsGaRk-~d--kIl~WDiR~~-~~pv~~L~rhv~~TN---QRI~FDld~~~~~LasG~--------------- 316 (406)
T KOG2919|consen 259 CEDGNKLFSGARK-DD--KILCWDIRYS-RDPVYALERHVGDTN---QRILFDLDPKGEILASGD--------------- 316 (406)
T ss_pred ccCcCeecccccC-CC--eEEEEeehhc-cchhhhhhhhccCcc---ceEEEecCCCCceeeccC---------------
Confidence 9999998776643 23 3444444332 111111111111000 010134568888877654
Q ss_pred CCCCCCCCceeEEEecCC-Cce
Q 004475 386 GFTPEGNIPFLDLFDINT-GSK 406 (751)
Q Consensus 386 ~~~~~~~~~~l~~~d~~~-g~~ 406 (751)
+...+.+||+++ |..
T Consensus 317 ------tdG~V~vwdlk~~gn~ 332 (406)
T KOG2919|consen 317 ------TDGSVRVWDLKDLGNE 332 (406)
T ss_pred ------CCccEEEEecCCCCCc
Confidence 334788999987 553
No 263
>COG0596 MhpC Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]
Probab=98.40 E-value=8.7e-06 Score=81.26 Aligned_cols=72 Identities=18% Similarity=0.250 Sum_probs=47.1
Q ss_pred eEEEEcCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEccC
Q 004475 555 FAVLAGPSIPIIGEGDKLPNDRFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSG 634 (751)
Q Consensus 555 ~~v~~~~~~~~~g~g~~~~~~~~~~~~~~d~~~~v~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~ 634 (751)
|.++. .+.+|+|.+...........+++...++ ..+ ..++.++|||+||.++..++.++|+.++++++.++
T Consensus 51 ~~~~~---~d~~g~g~s~~~~~~~~~~~~~~~~~~~---~~~---~~~~~l~G~S~Gg~~~~~~~~~~p~~~~~~v~~~~ 121 (282)
T COG0596 51 YRVIA---PDLRGHGRSDPAGYSLSAYADDLAALLD---ALG---LEKVVLVGHSMGGAVALALALRHPDRVRGLVLIGP 121 (282)
T ss_pred eEEEE---ecccCCCCCCcccccHHHHHHHHHHHHH---HhC---CCceEEEEecccHHHHHHHHHhcchhhheeeEecC
Confidence 89988 4555777664000111111333333333 222 23499999999999999999999999999998886
Q ss_pred C
Q 004475 635 S 635 (751)
Q Consensus 635 ~ 635 (751)
.
T Consensus 122 ~ 122 (282)
T COG0596 122 A 122 (282)
T ss_pred C
Confidence 4
No 264
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=98.39 E-value=2.3e-05 Score=84.60 Aligned_cols=181 Identities=14% Similarity=0.151 Sum_probs=118.2
Q ss_pred cccceeecCCCCeEEEEEeecccccccCCceeEEEEEcCCCCeeeccCCCCccccceeeeeEEecCCcEEEEeecCCCCC
Q 004475 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRD 111 (751)
Q Consensus 32 ~~~~p~~SPDG~~iaf~~~~~~~~~~~~~~~~l~i~~~~~g~~~~lt~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~ 111 (751)
.+...+++-||+++|+- .....|-++++.++..+..+.+... .+..+.++|.|+.||..+.+
T Consensus 98 p~r~~~v~g~g~~iaag----------sdD~~vK~~~~~D~s~~~~lrgh~a----pVl~l~~~p~~~fLAvss~d---- 159 (933)
T KOG1274|consen 98 PIRDLAVSGSGKMIAAG----------SDDTAVKLLNLDDSSQEKVLRGHDA----PVLQLSYDPKGNFLAVSSCD---- 159 (933)
T ss_pred cceEEEEecCCcEEEee----------cCceeEEEEeccccchheeecccCC----ceeeeeEcCCCCEEEEEecC----
Confidence 46789999999999995 3446788888877665555444332 36788999999999988543
Q ss_pred CCCCCCCCCCCceeeccccccccchhhhhccCCccchhhhhhheeeEEEEEcC-CCC-ceecCC------C---ceEEee
Q 004475 112 PPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DGT-AKDFGT------P---AVYTAV 180 (751)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~G~-~~~lt~------~---~~~~~~ 180 (751)
+.|.++++ +|. ...++. . ..+..+
T Consensus 160 ---------------------------------------------G~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~ 194 (933)
T KOG1274|consen 160 ---------------------------------------------GKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRL 194 (933)
T ss_pred ---------------------------------------------ceEEEEEcccchhhhhcccCCccccccccceeeee
Confidence 57788888 662 222221 1 345578
Q ss_pred eeCCCCceEEEEEecCCcccccccCCCceeEEEEeCCCceeeeeccCCCCCCCCCccCCccCCCceeeeecCCCceEEEE
Q 004475 181 EPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWV 260 (751)
Q Consensus 181 ~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~spdG~~~i~~~ 260 (751)
+|+|||..+++...++ .+-+|+.++-+..-..... .....+..++|||+|++ |+..
T Consensus 195 aW~Pk~g~la~~~~d~-------------~Vkvy~r~~we~~f~Lr~~----------~~ss~~~~~~wsPnG~Y-iAAs 250 (933)
T KOG1274|consen 195 AWHPKGGTLAVPPVDN-------------TVKVYSRKGWELQFKLRDK----------LSSSKFSDLQWSPNGKY-IAAS 250 (933)
T ss_pred eecCCCCeEEeeccCC-------------eEEEEccCCceeheeeccc----------ccccceEEEEEcCCCcE-Eeee
Confidence 9999987777765443 4667777765443211111 11122457899999999 6553
Q ss_pred EeccCCCCccccCcccceeeccCCCCCCCCceEeEeeceeEE-EEEecCCceEEEeee
Q 004475 261 EAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFS-VSWCDDSLALVNETW 317 (751)
Q Consensus 261 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~-~~~spdg~~l~~~~~ 317 (751)
. ..++|-+|+.+ .-.+ ......+. .+|-|+...|-+..+
T Consensus 251 ~------------~~g~I~vWnv~---t~~~---~~~~~~Vc~~aw~p~~n~it~~~~ 290 (933)
T KOG1274|consen 251 T------------LDGQILVWNVD---THER---HEFKRAVCCEAWKPNANAITLITA 290 (933)
T ss_pred c------------cCCcEEEEecc---cchh---ccccceeEEEecCCCCCeeEEEee
Confidence 3 44789999986 2111 23334455 899999988877663
No 265
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=98.36 E-value=9.3e-06 Score=83.61 Aligned_cols=233 Identities=12% Similarity=0.090 Sum_probs=126.1
Q ss_pred eeEEeecCCCCCCCCc-ccccCCCCcccccceeecC-CCCeEEEEEeecccccccCCceeEEEEEcCCCCeeeccCCCCc
Q 004475 6 GIGIHRLLPDDSLGPE-KEVHGYPDGAKINFVSWSP-DGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDI 83 (751)
Q Consensus 6 ~~~~~~~~~~~~~g~~-~~l~~~~~~~~~~~p~~SP-DG~~iaf~~~~~~~~~~~~~~~~l~i~~~~~g~~~~lt~~~~~ 83 (751)
.|.+++|+. ++.-. .-+.++-++.-++...|.| |.++||.... ++..+||.+.+.+...-..|-....
T Consensus 604 ~iai~el~~--PGrLPDgv~p~l~Ngt~vtDl~WdPFD~~rLAVa~d--------dg~i~lWr~~a~gl~e~~~tPe~~l 673 (1012)
T KOG1445|consen 604 VIAIYELNE--PGRLPDGVMPGLFNGTLVTDLHWDPFDDERLAVATD--------DGQINLWRLTANGLPENEMTPEKIL 673 (1012)
T ss_pred eEEEEEcCC--CCCCCcccccccccCceeeecccCCCChHHeeeccc--------CceEEEEEeccCCCCcccCCcceee
Confidence 466777755 11110 1122334455678889998 7788888643 6778899888766543333221111
Q ss_pred cccc-eeeeeEEecC-CcEEEEeecCCCCCCCCCCCCCCCCceeeccccccccchhhhhccCCccchhhhhhheeeEEEE
Q 004475 84 CLNA-VFGSFVWVNN-STLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVL 161 (751)
Q Consensus 84 ~~~~-~~~~~~wspD-g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 161 (751)
..+. -+..+.|.|= ...|+..+ ....|-+
T Consensus 674 t~h~eKI~slRfHPLAadvLa~as-------------------------------------------------yd~Ti~l 704 (1012)
T KOG1445|consen 674 TIHGEKITSLRFHPLAADVLAVAS-------------------------------------------------YDSTIEL 704 (1012)
T ss_pred ecccceEEEEEecchhhhHhhhhh-------------------------------------------------ccceeee
Confidence 0000 1234455542 12222221 1156788
Q ss_pred EcC-CC-CceecCCC-ceEEeeeeCCCCceEEEEEecCCcccccccCCCceeEEEEeCCCceeeeeccCCCCCCCCCccC
Q 004475 162 GSL-DG-TAKDFGTP-AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYN 238 (751)
Q Consensus 162 ~~~-~G-~~~~lt~~-~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~ 238 (751)
+|+ ++ ..-++..+ +.+.+++|||||++|+....+ ..|.+|++... .+.+...++..+.
T Consensus 705 WDl~~~~~~~~l~gHtdqIf~~AWSpdGr~~AtVcKD-------------g~~rVy~Prs~-e~pv~Eg~gpvgt----- 765 (1012)
T KOG1445|consen 705 WDLANAKLYSRLVGHTDQIFGIAWSPDGRRIATVCKD-------------GTLRVYEPRSR-EQPVYEGKGPVGT----- 765 (1012)
T ss_pred eehhhhhhhheeccCcCceeEEEECCCCcceeeeecC-------------ceEEEeCCCCC-CCccccCCCCccC-----
Confidence 888 66 33455555 889999999999999987654 36888988765 3444444433221
Q ss_pred CccCCCceeeeecCCCceEEEEEeccCCCCccccCcccceeeccCCCCCCCCc-eEeEeeceeEE-EEEecCCceEEEee
Q 004475 239 SVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKP-EILHKLDLRFS-VSWCDDSLALVNET 316 (751)
Q Consensus 239 ~~~~~~~~~~~spdG~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~-~~l~~~~~~~~-~~~spdg~~l~~~~ 316 (751)
.--.+.|.-||+. |+... - +.....+|-+++.+....... +.........- |.|.+|...|+.+.
T Consensus 766 ----RgARi~wacdgr~-viv~G-f-------dk~SeRQv~~Y~Aq~l~~~pl~t~~lDvaps~LvP~YD~Ds~~lfltG 832 (1012)
T KOG1445|consen 766 ----RGARILWACDGRI-VIVVG-F-------DKSSERQVQMYDAQTLDLRPLYTQVLDVAPSPLVPHYDYDSNVLFLTG 832 (1012)
T ss_pred ----cceeEEEEecCcE-EEEec-c-------cccchhhhhhhhhhhccCCcceeeeecccCccccccccCCCceEEEec
Confidence 1115899999998 44322 1 111223666666542221111 11111122223 78899988654433
Q ss_pred eecccceeEEEecCCC
Q 004475 317 WYKTSQTRTWLVCPGS 332 (751)
Q Consensus 317 ~~~~~~~~l~~~~~~~ 332 (751)
. +...++.+.+--
T Consensus 833 -K--GD~~v~~yEv~~ 845 (1012)
T KOG1445|consen 833 -K--GDRFVNMYEVIY 845 (1012)
T ss_pred -C--CCceEEEEEecC
Confidence 2 334666665543
No 266
>KOG1553 consensus Predicted alpha/beta hydrolase BAT5 [General function prediction only]
Probab=98.35 E-value=1.2e-06 Score=83.93 Aligned_cols=183 Identities=14% Similarity=0.082 Sum_probs=110.5
Q ss_pred ceEEEEEEcCCCceEEEEEEcCC-CCCCCCCCCccEEEEEcCCCCcCcccCCcccCCCCccCCCCchHHHHHHhCCeEEE
Q 004475 480 QKEMIKYQRKDGVPLTATLYLPP-GYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVL 558 (751)
Q Consensus 480 ~~e~i~~~~~~~~~i~~~~~~P~-~~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~v~ 558 (751)
..++..+.+.+|.+|...++--. +..++. .-+||++-|. .+|++.+-.. .=++.||.|+
T Consensus 213 NG~R~kiks~dgneiDtmF~d~r~n~~~ng---q~LvIC~EGN---------------AGFYEvG~m~--tP~~lgYsvL 272 (517)
T KOG1553|consen 213 NGQRLKIKSSDGNEIDTMFLDGRPNQSGNG---QDLVICFEGN---------------AGFYEVGVMN--TPAQLGYSVL 272 (517)
T ss_pred CCeEEEEeecCCcchhheeecCCCCCCCCC---ceEEEEecCC---------------ccceEeeeec--ChHHhCceee
Confidence 35677788888888888777532 111111 3578877773 2333333211 1266899999
Q ss_pred EcCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEccCCCCC
Q 004475 559 AGPSIPIIGEGDKLPNDRFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGSYNK 638 (751)
Q Consensus 559 ~~~~~~~~g~g~~~~~~~~~~~~~~d~~~~v~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~~d~ 638 (751)
..+. +|.+++.+- .+.....+.+..+++|..+.-....+.|+++|+|-||+-++++|..+|+ ++++|+-+.+-|.
T Consensus 273 GwNh---PGFagSTG~-P~p~n~~nA~DaVvQfAI~~Lgf~~edIilygWSIGGF~~~waAs~YPd-VkavvLDAtFDDl 347 (517)
T KOG1553|consen 273 GWNH---PGFAGSTGL-PYPVNTLNAADAVVQFAIQVLGFRQEDIILYGWSIGGFPVAWAASNYPD-VKAVVLDATFDDL 347 (517)
T ss_pred ccCC---CCccccCCC-CCcccchHHHHHHHHHHHHHcCCCccceEEEEeecCCchHHHHhhcCCC-ceEEEeecchhhh
Confidence 9444 444444221 2223345556677788887655677899999999999999999999986 7999988876553
Q ss_pred CCCccC-ccccc-ccchhhHHHHHhcCcccccCCCCCCEEEEEcCCCCCCC
Q 004475 639 TLTPFG-FQTEF-RTLWEATNVYIEMSPITHANKIKKPILIIHGEVDDKVG 687 (751)
Q Consensus 639 ~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~P~li~~G~~D~~vp 687 (751)
...... ++... +..-.....+......+.+...+.|+.+|--++|.++.
T Consensus 348 lpLAl~rMP~~~~giV~~aiRnh~NLnnaell~ry~GPi~lIRRt~dEIit 398 (517)
T KOG1553|consen 348 LPLALFRMPTFFSGIVEHAIRNHMNLNNAELLARYKGPIRLIRRTQDEIIT 398 (517)
T ss_pred hhHHhhhchHHHHHHHHHHHHHhcccchHHHHHhhcCchhHhhhhhHhhhh
Confidence 221110 11000 00001122333334444566778999998888887653
No 267
>PRK04940 hypothetical protein; Provisional
Probab=98.31 E-value=3.3e-05 Score=69.34 Aligned_cols=116 Identities=10% Similarity=0.068 Sum_probs=71.7
Q ss_pred CcEEEEEeChHHHHHHHHHHhCCCceeEEEEccCCCCCCCCc---cCcccccccchhhHHHHHhcCcccccCCCCCCEEE
Q 004475 601 SRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGSYNKTLTP---FGFQTEFRTLWEATNVYIEMSPITHANKIKKPILI 677 (751)
Q Consensus 601 ~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~~d~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~li 677 (751)
++++|+|.|+||+.|.+++.++. + .+|++.|.+.....- .+...+ .. .-..+...+.. + +..-..++
T Consensus 60 ~~~~liGSSLGGyyA~~La~~~g--~-~aVLiNPAv~P~~~L~~~ig~~~~-y~-~~~~~h~~eL~----~-~~p~r~~v 129 (180)
T PRK04940 60 ERPLICGVGLGGYWAERIGFLCG--I-RQVIFNPNLFPEENMEGKIDRPEE-YA-DIATKCVTNFR----E-KNRDRCLV 129 (180)
T ss_pred CCcEEEEeChHHHHHHHHHHHHC--C-CEEEECCCCChHHHHHHHhCCCcc-hh-hhhHHHHHHhh----h-cCcccEEE
Confidence 46999999999999999999983 3 356667765432110 011111 11 00111111111 0 11123689
Q ss_pred EEcCCCCCCCCChHHHHHHHHHHHhCCCcEEEEEeCCCCCcCCccccHHHHHHHHHHHHH
Q 004475 678 IHGEVDDKVGLFPMQAERFFDALKGHGALSRLVLLPFEHHVYAARENVMHVIWETDRWLQ 737 (751)
Q Consensus 678 ~~G~~D~~vp~~~~~~~~~~~~l~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~fl~ 737 (751)
+..+.|.+.. +.++.+.+... .+..+.+|++|.|.. .++.+..|++|+.
T Consensus 130 llq~gDEvLD--yr~a~~~y~~~------y~~~v~~GGdH~f~~---fe~~l~~I~~F~~ 178 (180)
T PRK04940 130 ILSRNDEVLD--SQRTAEELHPY------YEIVWDEEQTHKFKN---ISPHLQRIKAFKT 178 (180)
T ss_pred EEeCCCcccC--HHHHHHHhccC------ceEEEECCCCCCCCC---HHHHHHHHHHHHh
Confidence 9999999987 77766555321 157899999999765 6678889999984
No 268
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=98.30 E-value=0.00021 Score=67.58 Aligned_cols=261 Identities=11% Similarity=0.105 Sum_probs=142.6
Q ss_pred ccccceeecCCCCeEEEEEeecccccccCCceeEEEEEcC----CCCeeeccCCCCccccc----------eeeeeEEec
Q 004475 31 AKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAE----TGEAKPLFESPDICLNA----------VFGSFVWVN 96 (751)
Q Consensus 31 ~~~~~p~~SPDG~~iaf~~~~~~~~~~~~~~~~l~i~~~~----~g~~~~lt~~~~~~~~~----------~~~~~~wsp 96 (751)
..++..+|||||+.+|.- .....|.|++++ ..+++++..+.....++ .++.+.|.|
T Consensus 113 ~~cR~aafs~DG~lvATG----------saD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHP 182 (430)
T KOG0640|consen 113 SPCRAAAFSPDGSLVATG----------SADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHP 182 (430)
T ss_pred cceeeeeeCCCCcEEEcc----------CCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecc
Confidence 357889999999999883 344778888875 12333333222211111 244667888
Q ss_pred CCcEEEEeecCCCCCCCCCCCCCCCCceeeccccccccchhhhhccCCccchhhhhhheeeEEEEEcCCC-----Cceec
Q 004475 97 NSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSLDG-----TAKDF 171 (751)
Q Consensus 97 Dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~G-----~~~~l 171 (751)
-.+.|+-.+.+ ..|.+.|.+. ..+.+
T Consensus 183 re~ILiS~srD-------------------------------------------------~tvKlFDfsK~saKrA~K~~ 213 (430)
T KOG0640|consen 183 RETILISGSRD-------------------------------------------------NTVKLFDFSKTSAKRAFKVF 213 (430)
T ss_pred hhheEEeccCC-------------------------------------------------CeEEEEecccHHHHHHHHHh
Confidence 77766655332 3556666644 22344
Q ss_pred CCCceEEeeeeCCCCceEEEEEecCCcccccccCCCceeEEEEeCCCceeeeeccCCCCCCCCCccCCccCCCceeeeec
Q 004475 172 GTPAVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRA 251 (751)
Q Consensus 172 t~~~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~sp 251 (751)
++...+..++|.|.|.+|++.... ..+.+||+++-+.- +...|.. .....+..+.+|+
T Consensus 214 qd~~~vrsiSfHPsGefllvgTdH-------------p~~rlYdv~T~Qcf-vsanPd~--------qht~ai~~V~Ys~ 271 (430)
T KOG0640|consen 214 QDTEPVRSISFHPSGEFLLVGTDH-------------PTLRLYDVNTYQCF-VSANPDD--------QHTGAITQVRYSS 271 (430)
T ss_pred hccceeeeEeecCCCceEEEecCC-------------CceeEEeccceeEe-eecCccc--------ccccceeEEEecC
Confidence 444788899999999999986443 35778888876432 1111211 1223466889999
Q ss_pred CCCceEEEEEeccCCCCccccCcccceeeccCCCCCCCCceEeEe--eceeEE-EEEecCCceEEEeeeecccceeEEEe
Q 004475 252 DKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHK--LDLRFS-VSWCDDSLALVNETWYKTSQTRTWLV 328 (751)
Q Consensus 252 dG~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~--~~~~~~-~~~spdg~~l~~~~~~~~~~~~l~~~ 328 (751)
.|+ +|.+.+. .+.|.++|=- .....+.+.. ....+. ..|+.+|++|+-+. ..+.+++.
T Consensus 272 t~~--lYvTaSk-----------DG~IklwDGV--S~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG----~DS~vkLW 332 (430)
T KOG0640|consen 272 TGS--LYVTASK-----------DGAIKLWDGV--SNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSG----KDSTVKLW 332 (430)
T ss_pred Ccc--EEEEecc-----------CCcEEeeccc--cHHHHHHHHhhcCCceeeeEEEccCCeEEeecC----Ccceeeee
Confidence 998 5665432 2456666521 1112222221 222344 88999999887544 22344455
Q ss_pred cCCCCCCcceeeeecccccccCCCCCCCeeeCCCCCEEEEeeeecCCcceEEEEccCCCCCCCCCceeEEEecCCCceeE
Q 004475 329 CPGSKDVAPRVLFDRVFENVYSDPGSPMMTRTSTGTNVIAKIKKENDEQIYILLNGRGFTPEGNIPFLDLFDINTGSKER 408 (751)
Q Consensus 329 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~spDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~ 408 (751)
.+.++ ...+...+....-... ..-.-.|.....+++|... ....|.-||.-++....
T Consensus 333 Ei~t~--R~l~~YtGAg~tgrq~-~rtqAvFNhtEdyVl~pDE--------------------as~slcsWdaRtadr~~ 389 (430)
T KOG0640|consen 333 EISTG--RMLKEYTGAGTTGRQK-HRTQAVFNHTEDYVLFPDE--------------------ASNSLCSWDARTADRVA 389 (430)
T ss_pred eecCC--ceEEEEecCCcccchh-hhhhhhhcCccceEEcccc--------------------ccCceeeccccchhhhh
Confidence 55553 1122211111000000 0000224555555555442 23368888888887777
Q ss_pred Eeeccc
Q 004475 409 IWESNR 414 (751)
Q Consensus 409 l~~~~~ 414 (751)
++....
T Consensus 390 l~slgH 395 (430)
T KOG0640|consen 390 LLSLGH 395 (430)
T ss_pred hcccCC
Confidence 776543
No 269
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=98.29 E-value=5.6e-06 Score=80.91 Aligned_cols=146 Identities=11% Similarity=0.133 Sum_probs=88.7
Q ss_pred ceEEeeeeCCCCceEEEEEecCCcccccccCCCceeEEEEeCCCceeeeeccCCCCCCCCCccCCccCCCceeeeecCCC
Q 004475 175 AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKP 254 (751)
Q Consensus 175 ~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~spdG~ 254 (751)
..+..+.||++|.+++-...+ ..|-.|++.-..++.+. ....+.+|+++|||+..
T Consensus 139 s~Vr~m~ws~~g~wmiSgD~g-------------G~iKyWqpnmnnVk~~~------------ahh~eaIRdlafSpnDs 193 (464)
T KOG0284|consen 139 SPVRTMKWSHNGTWMISGDKG-------------GMIKYWQPNMNNVKIIQ------------AHHAEAIRDLAFSPNDS 193 (464)
T ss_pred ccceeEEEccCCCEEEEcCCC-------------ceEEecccchhhhHHhh------------HhhhhhhheeccCCCCc
Confidence 567899999999998754222 23556766533222211 11224578999999887
Q ss_pred ceEEEEEeccCCCCccccCcccceeeccCCCCCCCCceEeEeeceeEE-EEEecCCceEEEeeeecccceeEEEecCCCC
Q 004475 255 STLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFS-VSWCDDSLALVNETWYKTSQTRTWLVCPGSK 333 (751)
Q Consensus 255 ~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~-~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~ 333 (751)
. ++-++ ..+.|.+++.- .......|....+.+. +.|.|.-..|+..+ . .+-+-+.|+.++
T Consensus 194 k-F~t~S------------dDg~ikiWdf~--~~kee~vL~GHgwdVksvdWHP~kgLiasgs-k---DnlVKlWDprSg 254 (464)
T KOG0284|consen 194 K-FLTCS------------DDGTIKIWDFR--MPKEERVLRGHGWDVKSVDWHPTKGLIASGS-K---DNLVKLWDPRSG 254 (464)
T ss_pred e-eEEec------------CCCeEEEEecc--CCchhheeccCCCCcceeccCCccceeEEcc-C---CceeEeecCCCc
Confidence 7 44443 34567777753 1234455667777777 99999876555433 2 236777788775
Q ss_pred CCcceeeeecccccccCCCCCCCeeeCCCCCEEEEeeee
Q 004475 334 DVAPRVLFDRVFENVYSDPGSPMMTRTSTGTNVIAKIKK 372 (751)
Q Consensus 334 ~~~~~~l~~~~~~~~~~~~~~~~~~~spDG~~l~~~~~~ 372 (751)
...-.|. ..-+.+.. +.|+|+|.+|+..+.+
T Consensus 255 -~cl~tlh-~HKntVl~------~~f~~n~N~Llt~skD 285 (464)
T KOG0284|consen 255 -SCLATLH-GHKNTVLA------VKFNPNGNWLLTGSKD 285 (464)
T ss_pred -chhhhhh-hccceEEE------EEEcCCCCeeEEccCC
Confidence 2211221 11222222 7799999999988854
No 270
>TIGR01849 PHB_depoly_PhaZ polyhydroxyalkanoate depolymerase, intracellular. This model represents an intracellular depolymerase for polyhydroxyalkanoate (PHA), a carbon and energy storing polyester that accumulates in granules in many bacterial species when carbon sources are abundant but other nutrients are limiting. This family is named for PHAs generally, rather than polyhydroxybutyrate (PHB) specificially as in Ralstonia eutropha H16, to avoid overcalling chemical specificity in other species. Note that this family lacks the classic GXSXG lipase motif and instead shows weak similarity to some
Probab=98.28 E-value=6.3e-05 Score=77.57 Aligned_cols=70 Identities=19% Similarity=0.174 Sum_probs=53.7
Q ss_pred cCCCC-CCEEEEEcCCCCCCCCChHHHHHHHHHHHhCC-CcEEEEEeCCCCCcC--CccccHHHHHHHHHHHHHHH
Q 004475 668 ANKIK-KPILIIHGEVDDKVGLFPMQAERFFDALKGHG-ALSRLVLLPFEHHVY--AARENVMHVIWETDRWLQKY 739 (751)
Q Consensus 668 ~~~~~-~P~li~~G~~D~~vp~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~H~~--~~~~~~~~~~~~~~~fl~~~ 739 (751)
+.+|+ +|+|.+.|++|.++| +.+++.+.+.+...+ .+.+.++.+++||.. .......+....+.+||.++
T Consensus 333 l~~I~~~pll~V~ge~D~I~p--~~qt~aa~~l~~~~~s~~k~~~~~~~~GH~Gvf~G~r~~~~i~P~i~~wl~~~ 406 (406)
T TIGR01849 333 PGAITRVALLTVEGENDDISG--LGQTKAALRLCTGIPEDMKRHHLQPGVGHYGVFSGSRFREEIYPLVREFIRRN 406 (406)
T ss_pred HHHCcccceEEEeccCCCcCC--HHHhHHHHHHhhcCChhhceEeecCCCCeEEEeeChhhhhhhchHHHHHHHhC
Confidence 45788 999999999999999 999998888764332 245677777889964 33344567889999999763
No 271
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=98.25 E-value=2.3e-05 Score=74.19 Aligned_cols=207 Identities=11% Similarity=0.074 Sum_probs=110.7
Q ss_pred ceEEeeeeCCCCceEEEEEecCCcccccccCCCceeEEEEeCCCceeeeeccCCCCCCCCCccC-CccCCCceeeeecCC
Q 004475 175 AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYN-SVREGMRSISWRADK 253 (751)
Q Consensus 175 ~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~spdG 253 (751)
..+..+.||.|...++.-+. ...|-+|.+.+++-.+ .|+ +...++..+.||.|+
T Consensus 264 ~aVlci~FSRDsEMlAsGsq-------------DGkIKvWri~tG~ClR------------rFdrAHtkGvt~l~FSrD~ 318 (508)
T KOG0275|consen 264 DAVLCISFSRDSEMLASGSQ-------------DGKIKVWRIETGQCLR------------RFDRAHTKGVTCLSFSRDN 318 (508)
T ss_pred cceEEEeecccHHHhhccCc-------------CCcEEEEEEecchHHH------------HhhhhhccCeeEEEEccCc
Confidence 45668899999998876433 3457788888775321 111 334567789999999
Q ss_pred CceEEEEEeccCCCCccccCcccceeeccCCCCCCCCceEeEeeceeEE-EEEecCCceEEEeeeecccceeEEEecCCC
Q 004475 254 PSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFS-VSWCDDSLALVNETWYKTSQTRTWLVCPGS 332 (751)
Q Consensus 254 ~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~-~~~spdg~~l~~~~~~~~~~~~l~~~~~~~ 332 (751)
.. |+-++ ....+.+..++ .|...++......-+. ..|++||..|+..+. .+ .+-+.+..+
T Consensus 319 Sq-iLS~s------------fD~tvRiHGlK--SGK~LKEfrGHsSyvn~a~ft~dG~~iisaSs--Dg--tvkvW~~Kt 379 (508)
T KOG0275|consen 319 SQ-ILSAS------------FDQTVRIHGLK--SGKCLKEFRGHSSYVNEATFTDDGHHIISASS--DG--TVKVWHGKT 379 (508)
T ss_pred ch-hhccc------------ccceEEEeccc--cchhHHHhcCccccccceEEcCCCCeEEEecC--Cc--cEEEecCcc
Confidence 98 55533 11234444443 1333344444444445 899999999887662 22 334444444
Q ss_pred CCCcceeeeecccccccCCCCCCCeeeCCCC-CEEEEeeeecCCcceEEEEccCCCCCCCCCceeEEEecCCCceeEEee
Q 004475 333 KDVAPRVLFDRVFENVYSDPGSPMMTRTSTG-TNVIAKIKKENDEQIYILLNGRGFTPEGNIPFLDLFDINTGSKERIWE 411 (751)
Q Consensus 333 ~~~~~~~l~~~~~~~~~~~~~~~~~~~spDG-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l~~ 411 (751)
+ +-...+.....+.. .+. +-.-|-. ..+++.- ..+.++.++.. |+..+-++
T Consensus 380 t--eC~~Tfk~~~~d~~---vns-v~~~PKnpeh~iVCN---------------------rsntv~imn~q-GQvVrsfs 431 (508)
T KOG0275|consen 380 T--ECLSTFKPLGTDYP---VNS-VILLPKNPEHFIVCN---------------------RSNTVYIMNMQ-GQVVRSFS 431 (508)
T ss_pred h--hhhhhccCCCCccc---cee-EEEcCCCCceEEEEc---------------------CCCeEEEEecc-ceEEeeec
Confidence 3 11111111111100 000 1011111 1222222 22367888885 55444444
Q ss_pred ccchhhhhceeeeecCCcceeeccCCCEEEEEEecCCCCCeEEEEEcCCCceeE
Q 004475 412 SNREKYFETAVALVFGQGEEDINLNQLKILTSKESKTEITQYHILSWPLKKSSQ 465 (751)
Q Consensus 412 ~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~l~~~~~~~g~~~~ 465 (751)
+... + -+++-.+..||.|.++++.... ..+|-....+|+.++
T Consensus 432 SGkR---E-----gGdFi~~~lSpkGewiYcigED----~vlYCF~~~sG~LE~ 473 (508)
T KOG0275|consen 432 SGKR---E-----GGDFINAILSPKGEWIYCIGED----GVLYCFSVLSGKLER 473 (508)
T ss_pred cCCc---c-----CCceEEEEecCCCcEEEEEccC----cEEEEEEeecCceee
Confidence 3211 1 1122236789999999888643 458888888887665
No 272
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=98.22 E-value=0.001 Score=71.61 Aligned_cols=195 Identities=12% Similarity=0.024 Sum_probs=110.2
Q ss_pred ceEEeeeeCCCCceEEEEEecCCcccccccCCCceeEEEEeCCCceeeeeccCCCCCCCCCccCCccCCCceeeeecCCC
Q 004475 175 AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKP 254 (751)
Q Consensus 175 ~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~spdG~ 254 (751)
.....++.|+.|.+.++-.. ...|-++++..|-.+.-.... ......+++++..--++
T Consensus 449 ~~~~av~vs~CGNF~~IG~S-------------~G~Id~fNmQSGi~r~sf~~~---------~ah~~~V~gla~D~~n~ 506 (910)
T KOG1539|consen 449 INATAVCVSFCGNFVFIGYS-------------KGTIDRFNMQSGIHRKSFGDS---------PAHKGEVTGLAVDGTNR 506 (910)
T ss_pred cceEEEEEeccCceEEEecc-------------CCeEEEEEcccCeeecccccC---------ccccCceeEEEecCCCc
Confidence 55678999999998776432 346788999877554221100 01112233444433333
Q ss_pred ceEEEEEeccCCCCccccCcccceeeccCCCCCCCCceEeEee--ceeEE-EEEecCCceEEEeeeecccceeEEEecCC
Q 004475 255 STLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKL--DLRFS-VSWCDDSLALVNETWYKTSQTRTWLVCPG 331 (751)
Q Consensus 255 ~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~--~~~~~-~~~spdg~~l~~~~~~~~~~~~l~~~~~~ 331 (751)
. ++-+. ..+.|..++.+ +.. .+... ..... +.++-....++... ..-.|.++|..
T Consensus 507 ~-~vsa~------------~~Gilkfw~f~---~k~--l~~~l~l~~~~~~iv~hr~s~l~a~~~----ddf~I~vvD~~ 564 (910)
T KOG1539|consen 507 L-LVSAG------------ADGILKFWDFK---KKV--LKKSLRLGSSITGIVYHRVSDLLAIAL----DDFSIRVVDVV 564 (910)
T ss_pred e-EEEcc------------CcceEEEEecC---Ccc--eeeeeccCCCcceeeeeehhhhhhhhc----CceeEEEEEch
Confidence 2 22222 33566677664 222 11111 11112 34444444443332 23467888887
Q ss_pred CCCCcceeeeecccccccCCCCCCCeeeCCCCCEEEEeeeecCCcceEEEEccCCCCCCCCCceeEEEecCCCceeEEee
Q 004475 332 SKDVAPRVLFDRVFENVYSDPGSPMMTRTSTGTNVIAKIKKENDEQIYILLNGRGFTPEGNIPFLDLFDINTGSKERIWE 411 (751)
Q Consensus 332 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~spDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l~~ 411 (751)
+. ...+.+.+..+.... ++|||||+||+.++++. .|+.||+.++...-...
T Consensus 565 t~--kvvR~f~gh~nritd------~~FS~DgrWlisasmD~---------------------tIr~wDlpt~~lID~~~ 615 (910)
T KOG1539|consen 565 TR--KVVREFWGHGNRITD------MTFSPDGRWLISASMDS---------------------TIRTWDLPTGTLIDGLL 615 (910)
T ss_pred hh--hhhHHhhccccceee------eEeCCCCcEEEEeecCC---------------------cEEEEeccCcceeeeEe
Confidence 73 222222222222222 88999999999999653 79999999998765555
Q ss_pred ccchhhhhceeeeecCCcceeeccCCCEEEEEEecCCCCCeEEEEE
Q 004475 412 SNREKYFETAVALVFGQGEEDINLNQLKILTSKESKTEITQYHILS 457 (751)
Q Consensus 412 ~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~l~~~~ 457 (751)
.+.. ... .++||+|..|+.+...-+ .||++.
T Consensus 616 vd~~-----~~s-------ls~SPngD~LAT~Hvd~~---gIylWs 646 (910)
T KOG1539|consen 616 VDSP-----CTS-------LSFSPNGDFLATVHVDQN---GIYLWS 646 (910)
T ss_pred cCCc-----cee-------eEECCCCCEEEEEEecCc---eEEEEE
Confidence 4432 222 489999999998885533 467665
No 273
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=98.21 E-value=0.00082 Score=79.57 Aligned_cols=177 Identities=14% Similarity=0.077 Sum_probs=93.2
Q ss_pred EeeeeCCCCceEEEEEecCCcccccccCCCceeEEEEeCCCceeeeeccCCCCCC---CCCccCCccCCCceeeeecCCC
Q 004475 178 TAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAED---IPVCYNSVREGMRSISWRADKP 254 (751)
Q Consensus 178 ~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~---~~~~~~~~~~~~~~~~~spdG~ 254 (751)
..++++|++..|+++... +..|++++..++....+... +... ........-.++.+++++|||+
T Consensus 686 ~gVa~dp~~g~LyVad~~------------~~~I~v~d~~~g~v~~~~G~-G~~~~~~g~~~~~~~~~~P~GIavspdG~ 752 (1057)
T PLN02919 686 WDVCFEPVNEKVYIAMAG------------QHQIWEYNISDGVTRVFSGD-GYERNLNGSSGTSTSFAQPSGISLSPDLK 752 (1057)
T ss_pred eEEEEecCCCeEEEEECC------------CCeEEEEECCCCeEEEEecC-CccccCCCCccccccccCccEEEEeCCCC
Confidence 468999988788876433 45688999877655443211 1000 0000011113456899999999
Q ss_pred ceEEEEEeccCCCCccccCcccceeeccCCCCCCCCceEeEeec----------------------eeEE-EEEecCCce
Q 004475 255 STLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLD----------------------LRFS-VSWCDDSLA 311 (751)
Q Consensus 255 ~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~----------------------~~~~-~~~spdg~~ 311 (751)
+ |+++.. ..+.|.+++++ ++....+.... ..-. +++++||+
T Consensus 753 ~-LYVADs-----------~n~~Irv~D~~---tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~- 816 (1057)
T PLN02919 753 E-LYIADS-----------ESSSIRALDLK---TGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQ- 816 (1057)
T ss_pred E-EEEEEC-----------CCCeEEEEECC---CCcEEEEEecccccCcccccccCCCCchhhhhccCCceeeEeCCCc-
Confidence 8 666542 22467777764 22211111100 0112 67889997
Q ss_pred EEEeeeecccceeEEEecCCCCCCcceeeeeccccc------cc-CCCCCCCeeeCCCCCEEEEeeeecCCcceEEEEcc
Q 004475 312 LVNETWYKTSQTRTWLVCPGSKDVAPRVLFDRVFEN------VY-SDPGSPMMTRTSTGTNVIAKIKKENDEQIYILLNG 384 (751)
Q Consensus 312 l~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~------~~-~~~~~~~~~~spDG~~l~~~~~~~~~~~~~~~~~~ 384 (751)
| |.++ ..+.+|.+++.+++ ....+....... .. .......+++++||+ |++..
T Consensus 817 L-YVAD--s~N~rIrviD~~tg--~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~-lyVaD-------------- 876 (1057)
T PLN02919 817 I-YVAD--SYNHKIKKLDPATK--RVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGR-LFVAD-------------- 876 (1057)
T ss_pred E-EEEE--CCCCEEEEEECCCC--eEEEEeccCCcCCCCCcccccccCCceEEEEeCCCC-EEEEE--------------
Confidence 3 3332 23467888888774 222222111000 00 001111267889996 44433
Q ss_pred CCCCCCCCCceeEEEecCCCceeEE
Q 004475 385 RGFTPEGNIPFLDLFDINTGSKERI 409 (751)
Q Consensus 385 ~~~~~~~~~~~l~~~d~~~g~~~~l 409 (751)
..+..|.+||+.+++..++
T Consensus 877 ------t~Nn~Irvid~~~~~~~~~ 895 (1057)
T PLN02919 877 ------TNNSLIRYLDLNKGEAAEI 895 (1057)
T ss_pred ------CCCCEEEEEECCCCcccee
Confidence 2345889999988765333
No 274
>PF11339 DUF3141: Protein of unknown function (DUF3141); InterPro: IPR024501 This family of proteins appears to be predominantly expressed in Proteobacteria. Their function is unknown.
Probab=98.21 E-value=5.6e-05 Score=77.61 Aligned_cols=49 Identities=22% Similarity=0.324 Sum_probs=41.1
Q ss_pred cCCCCCCEEEEEcCCCCCCCCChHHHHHH-------HHHHHhCCCcEEEEEeCCCCCc
Q 004475 668 ANKIKKPILIIHGEVDDKVGLFPMQAERF-------FDALKGHGALSRLVLLPFEHHV 718 (751)
Q Consensus 668 ~~~~~~P~li~~G~~D~~vp~~~~~~~~~-------~~~l~~~~~~~~~~~~~~~~H~ 718 (751)
+++|++|+++++|..|.+.| ++++... .+.++..|..+.+.+.+..||-
T Consensus 293 Lr~Ir~Piivfas~gDnITP--P~QaL~WI~dlY~~~~ei~a~gQ~IVY~~h~~vGHL 348 (581)
T PF11339_consen 293 LRNIRSPIIVFASYGDNITP--PQQALNWIPDLYPDTEEIKAAGQTIVYLLHESVGHL 348 (581)
T ss_pred hhhCCCCEEEEeccCCCCCC--hhHhccchHhhcCCHHHHHhCCCEEEEEecCCCCce
Confidence 56889999999999999999 8988433 3556778888899999999996
No 275
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=98.20 E-value=4.8e-05 Score=70.46 Aligned_cols=224 Identities=13% Similarity=0.056 Sum_probs=125.2
Q ss_pred eeEEeecCCCCCCCCcccccCCCCcccccceeecCCCCeEEEEEeecccccccCCceeEEEEEcCC-------CC-eeec
Q 004475 6 GIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAET-------GE-AKPL 77 (751)
Q Consensus 6 ~~~~~~~~~~~~~g~~~~l~~~~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~~~~~l~i~~~~~-------g~-~~~l 77 (751)
.+.+||+.+ |+....- .-+..+...-||++|.+++++.. .. -.+...|.+.++.. .+ ...+
T Consensus 75 t~kLWDv~t----Gk~la~~--k~~~~Vk~~~F~~~gn~~l~~tD----~~-mg~~~~v~~fdi~~~~~~~~s~ep~~kI 143 (327)
T KOG0643|consen 75 TAKLWDVET----GKQLATW--KTNSPVKRVDFSFGGNLILASTD----KQ-MGYTCFVSVFDIRDDSSDIDSEEPYLKI 143 (327)
T ss_pred eeEEEEcCC----CcEEEEe--ecCCeeEEEeeccCCcEEEEEeh----hh-cCcceEEEEEEccCChhhhcccCceEEe
Confidence 578999999 9888664 33345788999999999999763 11 13446666666652 22 2222
Q ss_pred cCCCCccccceeeeeEEecCCcEEEEeecCCCCCCCCCCCCCCCCceeeccccccccchhhhhccCCccchhhhhhheee
Q 004475 78 FESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTA 157 (751)
Q Consensus 78 t~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (751)
..... -+....|+|-|+.|+..-++ +
T Consensus 144 ~t~~s-----kit~a~Wg~l~~~ii~Ghe~-------------------------------------------------G 169 (327)
T KOG0643|consen 144 PTPDS-----KITSALWGPLGETIIAGHED-------------------------------------------------G 169 (327)
T ss_pred cCCcc-----ceeeeeecccCCEEEEecCC-------------------------------------------------C
Confidence 21111 24577999999999987322 4
Q ss_pred EEEEEcC-CC-Cceec-CCC-ceEEeeeeCCCCceEEEEEecCCcccccccCCCceeEEEEeCCCceeeee--ccCCCCC
Q 004475 158 QLVLGSL-DG-TAKDF-GTP-AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVREL--CDLPPAE 231 (751)
Q Consensus 158 ~l~~~~~-~G-~~~~l-t~~-~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l--~~~~~~~ 231 (751)
.|-.+|+ +| +...- ..+ ..+.++.+|||..+++..+.+. .-.+||..+-+...- +..|
T Consensus 170 ~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T~FiT~s~Dt-------------takl~D~~tl~v~Kty~te~P--- 233 (327)
T KOG0643|consen 170 SISIYDARTGKELVDSDEEHSSKINDLQFSRDRTYFITGSKDT-------------TAKLVDVRTLEVLKTYTTERP--- 233 (327)
T ss_pred cEEEEEcccCceeeechhhhccccccccccCCcceEEecccCc-------------cceeeeccceeeEEEeeeccc---
Confidence 6777888 66 33222 223 5678999999999987765543 234666665433221 1112
Q ss_pred CCCCccCCccCCCceeeeecCCCceEEEEEeccCCCCccccCcc----cceeeccCCCCCCCCceEeEeeceeEE-EEEe
Q 004475 232 DIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPR----DIIYTQPAEPAEGEKPEILHKLDLRFS-VSWC 306 (751)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~spdG~~~i~~~~~~~~~~~~~~~~~~----~~l~~~~~~~~~~~~~~~l~~~~~~~~-~~~s 306 (751)
+...+++|--.+ ++....++.-+..-..... .+.|-+-.+ ++.-.+..+-+.+. ++++
T Consensus 234 ------------vN~aaisP~~d~-VilgGGqeA~dVTTT~~r~GKFEArFyh~i~e----EEigrvkGHFGPINsvAfh 296 (327)
T KOG0643|consen 234 ------------VNTAAISPLLDH-VILGGGQEAMDVTTTSTRAGKFEARFYHLIFE----EEIGRVKGHFGPINSVAFH 296 (327)
T ss_pred ------------ccceecccccce-EEecCCceeeeeeeecccccchhhhHHHHHHH----HHhccccccccCcceeEEC
Confidence 225688898887 5553222111000000000 011111110 12223344556677 9999
Q ss_pred cCCceEEEeeeecccceeEEEec
Q 004475 307 DDSLALVNETWYKTSQTRTWLVC 329 (751)
Q Consensus 307 pdg~~l~~~~~~~~~~~~l~~~~ 329 (751)
|||+. |++..+.+.-+|+..+
T Consensus 297 PdGks--YsSGGEDG~VR~h~Fd 317 (327)
T KOG0643|consen 297 PDGKS--YSSGGEDGYVRLHHFD 317 (327)
T ss_pred CCCcc--cccCCCCceEEEEEec
Confidence 99995 3443333334454443
No 276
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=98.19 E-value=0.00061 Score=68.17 Aligned_cols=143 Identities=13% Similarity=0.087 Sum_probs=78.8
Q ss_pred eEEEEEcC-CCCceecCCCceEEeeeeCCCCceEEEEEecCCcccccccCCCceeEEEEeCCCcee-eeeccCCCCCCCC
Q 004475 157 AQLVLGSL-DGTAKDFGTPAVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLV-RELCDLPPAEDIP 234 (751)
Q Consensus 157 ~~l~~~~~-~G~~~~lt~~~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~-~~l~~~~~~~~~~ 234 (751)
..|+.++. +|+.+.+..+..+.....--++..|+.... .+++++.+.+.. +.+.... .....
T Consensus 47 ~~i~r~~~~~g~~~~~~~p~~~~~~~~~d~~g~Lv~~~~---------------g~~~~~~~~~~~~t~~~~~~-~~~~~ 110 (307)
T COG3386 47 GRIHRLDPETGKKRVFPSPGGFSSGALIDAGGRLIACEH---------------GVRLLDPDTGGKITLLAEPE-DGLPL 110 (307)
T ss_pred CeEEEecCCcCceEEEECCCCcccceeecCCCeEEEEcc---------------ccEEEeccCCceeEEecccc-CCCCc
Confidence 58899998 677666665555554444444445555422 255666654444 3332221 11111
Q ss_pred CccCCccCCCceeeeecCCCceEEEEEeccCCCCccccCcccceeeccCCCCCCCCceEeEeeceeEE--EEEecCCceE
Q 004475 235 VCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFS--VSWCDDSLAL 312 (751)
Q Consensus 235 ~~~~~~~~~~~~~~~spdG~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~--~~~spdg~~l 312 (751)
.........|||+ +++................+.||+++.. +...+.+ .....+. ++|||||+.+
T Consensus 111 -------~r~ND~~v~pdG~--~wfgt~~~~~~~~~~~~~~G~lyr~~p~---g~~~~l~-~~~~~~~NGla~SpDg~tl 177 (307)
T COG3386 111 -------NRPNDGVVDPDGR--IWFGDMGYFDLGKSEERPTGSLYRVDPD---GGVVRLL-DDDLTIPNGLAFSPDGKTL 177 (307)
T ss_pred -------CCCCceeEcCCCC--EEEeCCCccccCccccCCcceEEEEcCC---CCEEEee-cCcEEecCceEECCCCCEE
Confidence 1123568889987 6775433100000011223589999863 4333333 3323333 9999999988
Q ss_pred EEeeeecccceeEEEecCC
Q 004475 313 VNETWYKTSQTRTWLVCPG 331 (751)
Q Consensus 313 ~~~~~~~~~~~~l~~~~~~ 331 (751)
+++- +...+||+++.+
T Consensus 178 y~aD---T~~~~i~r~~~d 193 (307)
T COG3386 178 YVAD---TPANRIHRYDLD 193 (307)
T ss_pred EEEe---CCCCeEEEEecC
Confidence 8765 334688888776
No 277
>PF10230 DUF2305: Uncharacterised conserved protein (DUF2305); InterPro: IPR019363 This entry contains proteins that have no known function.
Probab=98.18 E-value=1.9e-05 Score=78.09 Aligned_cols=187 Identities=13% Similarity=0.107 Sum_probs=106.1
Q ss_pred ccEEEEEcCCCCcCcccCCcccCCCCccCCCCchHHHHHH---hCCeEEEEcCCCCCCCCCCCCCC-----chhHHHHHH
Q 004475 512 LPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFL---ARRFAVLAGPSIPIIGEGDKLPN-----DRFVEQLVS 583 (751)
Q Consensus 512 ~P~vv~~HGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~G~~v~~~~~~~~~g~g~~~~~-----~~~~~~~~~ 583 (751)
.++++++.|.| +..+++..+...+. ...|.|++ .+..|+...... ....-.+.+
T Consensus 2 ~~li~~IPGNP---------------Glv~fY~~Fl~~L~~~l~~~~~i~~---ish~Gh~~~~~~~~~~~~~~~~sL~~ 63 (266)
T PF10230_consen 2 RPLIVFIPGNP---------------GLVEFYEEFLSALYEKLNPQFEILG---ISHAGHSTSPSNSKFSPNGRLFSLQD 63 (266)
T ss_pred cEEEEEECCCC---------------ChHHHHHHHHHHHHHhCCCCCeeEE---ecCCCCcCCcccccccCCCCccCHHH
Confidence 47899999864 12222223334444 35888988 555565443222 111123334
Q ss_pred HHHHHHHHHHHc---CCCCCCcEEEEEeChHHHHHHHHHHhCC---CceeEEEEccCCCC-CCCCccCcccc------c-
Q 004475 584 SAEAAVEEVVRR---GVADPSRIAVGGHSYGAFMTAHLLAHAP---HLFCCGIARSGSYN-KTLTPFGFQTE------F- 649 (751)
Q Consensus 584 d~~~~v~~l~~~---~~id~~~i~l~G~S~GG~~a~~~a~~~p---~~~~~~v~~~~~~d-~~~~~~~~~~~------~- 649 (751)
.+...++++.+. ......+++++|||.|+++++.++.+.+ ..+..++++.|... ....+.+..-. .
T Consensus 64 QI~hk~~~i~~~~~~~~~~~~~liLiGHSIGayi~levl~r~~~~~~~V~~~~lLfPTi~~ia~Sp~G~~l~~~~~~~~~ 143 (266)
T PF10230_consen 64 QIEHKIDFIKELIPQKNKPNVKLILIGHSIGAYIALEVLKRLPDLKFRVKKVILLFPTIEDIAKSPNGRRLTPLLFSPPP 143 (266)
T ss_pred HHHHHHHHHHHHhhhhcCCCCcEEEEeCcHHHHHHHHHHHhccccCCceeEEEEeCCccccccCCchhHHHHHHHhhccH
Confidence 444555555443 2113578999999999999999999998 67888888888633 11111110000 0
Q ss_pred ----------------------------ccc----------hhh-----------HHHHHhcCccc---ccCCC---CCC
Q 004475 650 ----------------------------RTL----------WEA-----------TNVYIEMSPIT---HANKI---KKP 674 (751)
Q Consensus 650 ----------------------------~~~----------~~~-----------~~~~~~~~~~~---~~~~~---~~P 674 (751)
..+ ... .+.+....... .++.. ...
T Consensus 144 ~~~~~~~~~~l~~~lP~~~~~~lv~~~~~~~~~~~~~t~~~l~~~~~v~qaL~Ma~~Em~~I~~~d~~~~~~~~~~~~~k 223 (266)
T PF10230_consen 144 LVWLASFLSFLLSLLPESVLRWLVRWVMGFPPPAVEATTKFLLSPRVVRQALYMARDEMREIREDDNDELIKHHNENGDK 223 (266)
T ss_pred HHHHHHHHHHHHHHCCHHHHHHHHHHHcCCChHHHHHHHHHhcCHHHHHHHHHHHHHHHHHccCcchHHHHHHhccCCCE
Confidence 000 000 00111111100 11111 568
Q ss_pred EEEEEcCCCCCCCCChHHHHHHHHHHHhCCCcEEEEEeCCCCCcC
Q 004475 675 ILIIHGEVDDKVGLFPMQAERFFDALKGHGALSRLVLLPFEHHVY 719 (751)
Q Consensus 675 ~li~~G~~D~~vp~~~~~~~~~~~~l~~~~~~~~~~~~~~~~H~~ 719 (751)
+.+..|..|..|| .....++.+.+.....++.+.. ++..|.|
T Consensus 224 l~f~fg~~D~Wvp--~~~~~~l~~~~~~~~~~~~v~~-~~i~HaF 265 (266)
T PF10230_consen 224 LWFYFGQNDHWVP--NETRDELIERYPGHEPDVVVDE-EGIPHAF 265 (266)
T ss_pred EEEEEeCCCCCCC--HHHHHHHHHHcCCCCCeEEEec-CCCCCCC
Confidence 9999999999998 8888888888775545666666 7888876
No 278
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=98.17 E-value=0.00026 Score=74.93 Aligned_cols=194 Identities=15% Similarity=0.142 Sum_probs=119.1
Q ss_pred ceeecCCCCeEEEEEeecccccccCCceeEEEEEcCCCCeeeccCCCCccccceeeeeEEecCCcEEEEeecCCCCCCCC
Q 004475 35 FVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRDPPK 114 (751)
Q Consensus 35 ~p~~SPDG~~iaf~~~~~~~~~~~~~~~~l~i~~~~~g~~~~lt~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~ 114 (751)
..+||++|+.|+.+ .+..|-++++++++.. +.+....+.. .+..++.+||++.|+.....
T Consensus 24 ~~~~s~nG~~L~t~-----------~~d~Vi~idv~t~~~~-l~s~~~ed~d-~ita~~l~~d~~~L~~a~rs------- 83 (775)
T KOG0319|consen 24 PVAWSSNGQHLYTA-----------CGDRVIIIDVATGSIA-LPSGSNEDED-EITALALTPDEEVLVTASRS------- 83 (775)
T ss_pred ceeECCCCCEEEEe-----------cCceEEEEEccCCcee-cccCCccchh-hhheeeecCCccEEEEeecc-------
Confidence 38999999999884 4467888999998864 4333322211 35688999999988877321
Q ss_pred CCCCCCCCceeeccccccccchhhhhccCCccchhhhhhheeeEEEEEcC-CCCceec-CC-C-ceEEeeeeCCCCceEE
Q 004475 115 KTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DGTAKDF-GT-P-AVYTAVEPSPDQKYVL 190 (751)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~G~~~~l-t~-~-~~~~~~~~SpDG~~i~ 190 (751)
..|-++.+ +|+..+. .- + ..+..++|+|.|..++
T Consensus 84 ------------------------------------------~llrv~~L~tgk~irswKa~He~Pvi~ma~~~~g~LlA 121 (775)
T KOG0319|consen 84 ------------------------------------------QLLRVWSLPTGKLIRSWKAIHEAPVITMAFDPTGTLLA 121 (775)
T ss_pred ------------------------------------------ceEEEEEcccchHhHhHhhccCCCeEEEEEcCCCceEE
Confidence 35566666 6643322 21 3 6677889999995444
Q ss_pred EEEecCCcccccccCCCceeEEEEeCCCceee-eeccCCCCCCCCCccCCccCCCceeeeecCCCceEEEEEeccCCCCc
Q 004475 191 ITSMHRPYSYKVPCARFSQKVQVWTTDGKLVR-ELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDAN 269 (751)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~spdG~~~i~~~~~~~~~~~~ 269 (751)
.... ...+-+||...+... .+-.+++ -+..+.|.|+-++.+++...
T Consensus 122 tgga-------------D~~v~VWdi~~~~~th~fkG~gG-------------vVssl~F~~~~~~~lL~sg~------- 168 (775)
T KOG0319|consen 122 TGGA-------------DGRVKVWDIKNGYCTHSFKGHGG-------------VVSSLLFHPHWNRWLLASGA------- 168 (775)
T ss_pred eccc-------------cceEEEEEeeCCEEEEEecCCCc-------------eEEEEEeCCccchhheeecC-------
Confidence 3322 345779999876543 2212222 24577899998874444321
Q ss_pred cccCcccceeeccCCCCCCCCceEeEeeceeEE-EEEecCCceEEEeeeecccceeEEEecCCC
Q 004475 270 VEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFS-VSWCDDSLALVNETWYKTSQTRTWLVCPGS 332 (751)
Q Consensus 270 ~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~-~~~spdg~~l~~~~~~~~~~~~l~~~~~~~ 332 (751)
..+.++++++..... ....+..+.-.+. +.+++|+..+++.. +...+++.++..
T Consensus 169 ----~D~~v~vwnl~~~~t-cl~~~~~H~S~vtsL~~~~d~~~~ls~~----RDkvi~vwd~~~ 223 (775)
T KOG0319|consen 169 ----TDGTVRVWNLNDKRT-CLHTMILHKSAVTSLAFSEDSLELLSVG----RDKVIIVWDLVQ 223 (775)
T ss_pred ----CCceEEEEEcccCch-HHHHHHhhhhheeeeeeccCCceEEEec----cCcEEEEeehhh
Confidence 235788888752111 1222233344455 89999999887765 234566677644
No 279
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=98.17 E-value=0.00018 Score=68.65 Aligned_cols=201 Identities=11% Similarity=0.087 Sum_probs=104.8
Q ss_pred CCCceEEEEEecCCcccccccCCCceeEEEEeCCCceeeeeccCCCCCCCCCccCCccCCCceeeeecCCCceEEEEEec
Q 004475 184 PDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQ 263 (751)
Q Consensus 184 pDG~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~spdG~~~i~~~~~~ 263 (751)
|+-..+++++.+. -|.+||.-+++.+.-...--.. ........+.|||||.+ |+.-
T Consensus 121 P~t~l~a~ssr~~-------------PIh~wdaftG~lraSy~~ydh~-------de~taAhsL~Fs~DGeq-lfaG--- 176 (406)
T KOG2919|consen 121 PSTNLFAVSSRDQ-------------PIHLWDAFTGKLRASYRAYDHQ-------DEYTAAHSLQFSPDGEQ-LFAG--- 176 (406)
T ss_pred CccceeeeccccC-------------ceeeeeccccccccchhhhhhH-------HhhhhheeEEecCCCCe-Eeec---
Confidence 6666776665543 3889999888776432221100 00122347899999998 4441
Q ss_pred cCCCCccccCcccceeeccCCCCCCCC---ceEeEe----eceeEE-EEEecCCc-eEEEeeeecccceeEEEecCCCCC
Q 004475 264 DRGDANVEVSPRDIIYTQPAEPAEGEK---PEILHK----LDLRFS-VSWCDDSL-ALVNETWYKTSQTRTWLVCPGSKD 334 (751)
Q Consensus 264 ~~~~~~~~~~~~~~l~~~~~~~~~~~~---~~~l~~----~~~~~~-~~~spdg~-~l~~~~~~~~~~~~l~~~~~~~~~ 334 (751)
....|.++++. .+|.. ...++. ..+-++ +++||-.. .++..+ ..+++=++.-++
T Consensus 177 ----------ykrcirvFdt~-RpGr~c~vy~t~~~~k~gq~giisc~a~sP~~~~~~a~gs----Y~q~~giy~~~~-- 239 (406)
T KOG2919|consen 177 ----------YKRCIRVFDTS-RPGRDCPVYTTVTKGKFGQKGIISCFAFSPMDSKTLAVGS----YGQRVGIYNDDG-- 239 (406)
T ss_pred ----------ccceEEEeecc-CCCCCCcchhhhhcccccccceeeeeeccCCCCcceeeec----ccceeeeEecCC--
Confidence 22466666662 22221 112222 234455 88998755 566544 122333333334
Q ss_pred CcceeeeecccccccCCCCCCCeeeCCCCCEEEEeeeecCCcceEEEEccCCCCCCCCCceeEEEecCCCceeEEeeccc
Q 004475 335 VAPRVLFDRVFENVYSDPGSPMMTRTSTGTNVIAKIKKENDEQIYILLNGRGFTPEGNIPFLDLFDINTGSKERIWESNR 414 (751)
Q Consensus 335 ~~~~~l~~~~~~~~~~~~~~~~~~~spDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~ 414 (751)
..+-.+..+....+.. +.|.+||..|+..+. ....|-.||+-. ....|+....
T Consensus 240 ~~pl~llggh~gGvTh------L~~~edGn~lfsGaR--------------------k~dkIl~WDiR~-~~~pv~~L~r 292 (406)
T KOG2919|consen 240 RRPLQLLGGHGGGVTH------LQWCEDGNKLFSGAR--------------------KDDKILCWDIRY-SRDPVYALER 292 (406)
T ss_pred CCceeeecccCCCeee------EEeccCcCeeccccc--------------------CCCeEEEEeehh-ccchhhhhhh
Confidence 2334443333333222 889999998877662 223677888742 2233443322
Q ss_pred hhhhhceeeeecCCcceeeccCCCEEEEEEecCCCCCeEEEEEcCC-Cc
Q 004475 415 EKYFETAVALVFGQGEEDINLNQLKILTSKESKTEITQYHILSWPL-KK 462 (751)
Q Consensus 415 ~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~l~~~~~~~-g~ 462 (751)
. +.. ....-.+...|+|+.|+-- .+-+.+.++|+.+ |.
T Consensus 293 h-----v~~-TNQRI~FDld~~~~~LasG----~tdG~V~vwdlk~~gn 331 (406)
T KOG2919|consen 293 H-----VGD-TNQRILFDLDPKGEILASG----DTDGSVRVWDLKDLGN 331 (406)
T ss_pred h-----ccC-ccceEEEecCCCCceeecc----CCCccEEEEecCCCCC
Confidence 1 100 0001113567788766522 2356688888776 55
No 280
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=98.17 E-value=0.00026 Score=69.46 Aligned_cols=72 Identities=18% Similarity=0.277 Sum_probs=49.0
Q ss_pred CCcccccCCCCc--ccccceeecCCCCeEEEEEeecccccccCCceeEEEEEcCCCCeeeccCCCCccccceeeeeEEec
Q 004475 19 GPEKEVHGYPDG--AKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVN 96 (751)
Q Consensus 19 g~~~~l~~~~~~--~~~~~p~~SPDG~~iaf~~~~~~~~~~~~~~~~l~i~~~~~g~~~~lt~~~~~~~~~~~~~~~wsp 96 (751)
+..+.+.+.... .....|++||||+.+||+.. .++...||+.... ++.+.+.... .+..|.|++
T Consensus 10 ~~~~pv~g~~~~~~~~~~s~AvS~dg~~~A~v~~-------~~~~~~L~~~~~~-~~~~~~~~g~------~l~~PS~d~ 75 (253)
T PF10647_consen 10 GGVTPVPGALGEGGYDVTSPAVSPDGSRVAAVSE-------GDGGRSLYVGPAG-GPVRPVLTGG------SLTRPSWDP 75 (253)
T ss_pred CceeECCCCcCcCCccccceEECCCCCeEEEEEE-------cCCCCEEEEEcCC-CcceeeccCC------ccccccccC
Confidence 666666654332 25789999999999999862 1566899999864 4444443222 267889999
Q ss_pred CCcEEEEe
Q 004475 97 NSTLLIFT 104 (751)
Q Consensus 97 Dg~~l~~~ 104 (751)
+|...++.
T Consensus 76 ~g~~W~v~ 83 (253)
T PF10647_consen 76 DGWVWTVD 83 (253)
T ss_pred CCCEEEEE
Confidence 97655544
No 281
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=98.17 E-value=0.00059 Score=66.67 Aligned_cols=248 Identities=15% Similarity=0.108 Sum_probs=131.7
Q ss_pred eEEeecCCCCCCCCcccccCCCCcc-cccceeecCCCCeEEEEEeecccccccCCceeEEEEEcCCCCeeeccCCCCccc
Q 004475 7 IGIHRLLPDDSLGPEKEVHGYPDGA-KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICL 85 (751)
Q Consensus 7 ~~~~~~~~~~~~g~~~~l~~~~~~~-~~~~p~~SPDG~~iaf~~~~~~~~~~~~~~~~l~i~~~~~g~~~~lt~~~~~~~ 85 (751)
++++|..+ |+..+....+.+. -..+..|||||++|+.+.+ +. ..+.+-|=|+|+. ...+++-..++..+
T Consensus 30 ~~v~D~~~----g~~~~~~~a~~gRHFyGHg~fs~dG~~LytTEn----d~-~~g~G~IgVyd~~-~~~~ri~E~~s~GI 99 (305)
T PF07433_consen 30 ALVFDCRT----GQLLQRLWAPPGRHFYGHGVFSPDGRLLYTTEN----DY-ETGRGVIGVYDAA-RGYRRIGEFPSHGI 99 (305)
T ss_pred EEEEEcCC----CceeeEEcCCCCCEEecCEEEcCCCCEEEEecc----cc-CCCcEEEEEEECc-CCcEEEeEecCCCc
Confidence 56778877 8888755445544 4568999999999877653 11 2566888899987 45566644444322
Q ss_pred cceeeeeEEecCCcEEEEeecCCCCCCCCCCCCCCCCceeeccccccccchhhhhccCCccchhhhhhheeeEEEEEcC-
Q 004475 86 NAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL- 164 (751)
Q Consensus 86 ~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~- 164 (751)
. -..+.|.|||+.|+...- +....|+. + +.+.| .......|..+|.
T Consensus 100 G--PHel~l~pDG~tLvVANG-GI~Thpd~-----G-R~kLN------------------------l~tM~psL~~ld~~ 146 (305)
T PF07433_consen 100 G--PHELLLMPDGETLVVANG-GIETHPDS-----G-RAKLN------------------------LDTMQPSLVYLDAR 146 (305)
T ss_pred C--hhhEEEcCCCCEEEEEcC-CCccCccc-----C-ceecC------------------------hhhcCCceEEEecC
Confidence 2 247899999999887621 11110000 0 00000 0113357888877
Q ss_pred CCCc---eecCC--C-ceEEeeeeCCCCceEEEEEecCCcccccccCCCceeEEEEeCCCceeeeeccCCCCCCCCCccC
Q 004475 165 DGTA---KDFGT--P-AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYN 238 (751)
Q Consensus 165 ~G~~---~~lt~--~-~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~ 238 (751)
+|+. ..|.. + ..+.=+++++||.-+ +........ .....-+.+++..+. .+.+ ..+... ..
T Consensus 147 sG~ll~q~~Lp~~~~~lSiRHLa~~~~G~V~-~a~Q~qg~~-----~~~~PLva~~~~g~~-~~~~-~~p~~~-----~~ 213 (305)
T PF07433_consen 147 SGALLEQVELPPDLHQLSIRHLAVDGDGTVA-FAMQYQGDP-----GDAPPLVALHRRGGA-LRLL-PAPEEQ-----WR 213 (305)
T ss_pred CCceeeeeecCccccccceeeEEecCCCcEE-EEEecCCCC-----CccCCeEEEEcCCCc-ceec-cCChHH-----HH
Confidence 8842 33432 2 567889999999754 433322111 111223444443332 2222 211100 01
Q ss_pred CccCCCceeeeecCCCceEEEEEeccCCCCccccCcc-cceeeccCCCCCCCCceEeEeeceeEEEEEecCCceEEEeee
Q 004475 239 SVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPR-DIIYTQPAEPAEGEKPEILHKLDLRFSVSWCDDSLALVNETW 317 (751)
Q Consensus 239 ~~~~~~~~~~~spdG~~~i~~~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~spdg~~l~~~~~ 317 (751)
.-..++.++++++||.. |+.++ .| +.+.+++.+ .+...........+.++-.+++ ++.++
T Consensus 214 ~l~~Y~gSIa~~~~g~~-ia~ts------------PrGg~~~~~d~~---tg~~~~~~~l~D~cGva~~~~~--f~~ss- 274 (305)
T PF07433_consen 214 RLNGYIGSIAADRDGRL-IAVTS------------PRGGRVAVWDAA---TGRLLGSVPLPDACGVAPTDDG--FLVSS- 274 (305)
T ss_pred hhCCceEEEEEeCCCCE-EEEEC------------CCCCEEEEEECC---CCCEeeccccCceeeeeecCCc--eEEeC-
Confidence 11245668999999998 66654 23 467777764 3333332222322225555555 33333
Q ss_pred ecccceeEEEecCCC
Q 004475 318 YKTSQTRTWLVCPGS 332 (751)
Q Consensus 318 ~~~~~~~l~~~~~~~ 332 (751)
+...++......
T Consensus 275 ---G~G~~~~~~~~~ 286 (305)
T PF07433_consen 275 ---GQGQLIRLSPDG 286 (305)
T ss_pred ---CCccEEEccCcc
Confidence 234566665544
No 282
>COG1506 DAP2 Dipeptidyl aminopeptidases/acylaminoacyl-peptidases [Amino acid transport and metabolism]
Probab=98.16 E-value=0.001 Score=74.63 Aligned_cols=282 Identities=12% Similarity=0.069 Sum_probs=141.8
Q ss_pred CcceeEEeecCCCCCCCCcccccCCCCcccccceeecCCCCeEEEEEeecccccccCCceeEEEEEcCCCCeeeccCCCC
Q 004475 3 FFTGIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPD 82 (751)
Q Consensus 3 ~~~~~~~~~~~~~~~~g~~~~l~~~~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~~~~~l~i~~~~~g~~~~lt~~~~ 82 (751)
|...+|+.+... .+.+ ..+..+..+.|||||+.++|.+.. .....++|+++.. | .++....
T Consensus 41 ~~~~~~~~d~~~------~~~~---~~~~~~~~~~~spdg~~~~~~~~~------~~~~~~l~l~~~~-g---~~~~~~~ 101 (620)
T COG1506 41 YKSSLWVSDGKT------VRLL---TFGGGVSELRWSPDGSVLAFVSTD------GGRVAQLYLVDVG-G---LITKTAF 101 (620)
T ss_pred cccceEEEeccc------cccc---ccCCcccccccCCCCCEEEEEecc------CCCcceEEEEecC-C---ceeeeec
Confidence 445667654422 2233 344568999999999999998731 1336899999987 4 2221111
Q ss_pred ccccceeeeeEEecCCcEEEEeecCCCCCCCCCCC-CCCCCceeeccccccccchhhhhccCCccchhhhhh--heeeEE
Q 004475 83 ICLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTM-VPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDY--YTTAQL 159 (751)
Q Consensus 83 ~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~l 159 (751)
.+....|+|+|+.+++.............. ...... .++.. ....++
T Consensus 102 -----~v~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------------~~~~~~g~~~~~l 151 (620)
T COG1506 102 -----GVSDARWSPDGDRIAFLTAEGASKRDGGDHLFVDRLP-------------------------VWFDGRGGERSDL 151 (620)
T ss_pred -----ccccceeCCCCCeEEEEecccccccCCceeeeecccc-------------------------eeecCCCCcccce
Confidence 256779999999999953322111100000 000000 00000 023688
Q ss_pred EEEcCCCCceecCCC-ceEEeeeeCCCCceEEEEEecCCcccccccCCCceeEEEEeCCCceeeeeccCCCCCCCCCccC
Q 004475 160 VLGSLDGTAKDFGTP-AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYN 238 (751)
Q Consensus 160 ~~~~~~G~~~~lt~~-~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~ 238 (751)
|+++..+....+... ..+..+++.+|++.++....... ...+....+++...++.+..++..+..
T Consensus 152 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~-------- 217 (620)
T COG1506 152 YVVDIESKLIKLGLGNLDVVSFATDGDGRLVASIRLDDD------ADPWVTNLYVLIEGNGELESLTPGEGS-------- 217 (620)
T ss_pred EEEccCcccccccCCCCceeeeeeCCCCceeEEeeeccc------cCCceEeeEEEecCCCceEEEcCCCce--------
Confidence 999985544444444 66778888888888877665432 011122333333344445555443332
Q ss_pred CccCCCceeeeecCCCceEEEEEeccCCCCccccCcccceeeccCCCCCCCCceE-eEeec--eeEE-EEEecCCceEEE
Q 004475 239 SVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEI-LHKLD--LRFS-VSWCDDSLALVN 314 (751)
Q Consensus 239 ~~~~~~~~~~~spdG~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~-l~~~~--~~~~-~~~spdg~~l~~ 314 (751)
...+.|.+||+. +++......... .....+++++.+ ...... +...+ .... ..+.-++..++|
T Consensus 218 -----~~~~~~~~~gk~-~~~~~~~~~~~~----~~~~~~~~~~~~---~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 284 (620)
T COG1506 218 -----ISKLAFDADGKS-IALLGTESDRGL----AEGDFILLLDGE---LGEVDGDLSSGDDTRGAWAVEGGLDGDGLLF 284 (620)
T ss_pred -----eeeeeeCCCCCe-eEEeccCCccCc----cccceEEEEecc---ccccceeeccCCcccCcHHhccccCCCcEEE
Confidence 346799999998 555443322111 112344444411 111111 11111 1111 333456666666
Q ss_pred eeeecccceeEEEecCCCCCCcceeeeecccccccCCCCCCCeeeCCCCCEEEEeee
Q 004475 315 ETWYKTSQTRTWLVCPGSKDVAPRVLFDRVFENVYSDPGSPMMTRTSTGTNVIAKIK 371 (751)
Q Consensus 315 ~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~spDG~~l~~~~~ 371 (751)
.+....+...++.+...++ . ..+...+...+ ..|+.+|+.+++...
T Consensus 285 ~~~~~~g~~~l~~~~~~~~-~--~~~~~~~~~~v--------~~f~~~~~~~~~~~s 330 (620)
T COG1506 285 IATDGGGSSPLFRVDDLGG-G--VEGLSGDDGGV--------PGFDVDGRKLALAYS 330 (620)
T ss_pred EEecCCCceEEEEEeccCC-c--eeeecCCCceE--------EEEeeCCCEEEEEec
Confidence 6654334445555554332 1 22222221111 446678888888773
No 283
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=98.16 E-value=0.00047 Score=69.51 Aligned_cols=264 Identities=10% Similarity=0.086 Sum_probs=155.2
Q ss_pred cccceeecCCCCe-EEEEEeecccccccCCceeEEEEEcCCCCeee-ccCCCCccccceeeeeEEecCCcEEEEeecCCC
Q 004475 32 KINFVSWSPDGKR-IAFSVRVDEEDNVSSCKLRVWIADAETGEAKP-LFESPDICLNAVFGSFVWVNNSTLLIFTIPSSR 109 (751)
Q Consensus 32 ~~~~p~~SPDG~~-iaf~~~~~~~~~~~~~~~~l~i~~~~~g~~~~-lt~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~ 109 (751)
.+.+.+|||-.-+ +|.++ .-..+|| +..+-+.+. +..... .+.+..|-.||+.++..-.
T Consensus 28 ~vssl~fsp~~P~d~aVt~---------S~rvqly--~~~~~~~~k~~srFk~-----~v~s~~fR~DG~LlaaGD~--- 88 (487)
T KOG0310|consen 28 SVSSLCFSPKHPYDFAVTS---------SVRVQLY--SSVTRSVRKTFSRFKD-----VVYSVDFRSDGRLLAAGDE--- 88 (487)
T ss_pred cceeEecCCCCCCceEEec---------ccEEEEE--ecchhhhhhhHHhhcc-----ceeEEEeecCCeEEEccCC---
Confidence 6788999995443 45543 2335555 444544333 433333 3567788899998876511
Q ss_pred CCCCCCCCCCCCCceeeccccccccchhhhhccCCccchhhhhhheeeEEEEEcCCC--CceecCCC-ceEEeeeeCCCC
Q 004475 110 RDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSLDG--TAKDFGTP-AVYTAVEPSPDQ 186 (751)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~G--~~~~lt~~-~~~~~~~~SpDG 186 (751)
++.+-++|.+. -.+.+..+ ..+....|+|++
T Consensus 89 ----------------------------------------------sG~V~vfD~k~r~iLR~~~ah~apv~~~~f~~~d 122 (487)
T KOG0310|consen 89 ----------------------------------------------SGHVKVFDMKSRVILRQLYAHQAPVHVTKFSPQD 122 (487)
T ss_pred ----------------------------------------------cCcEEEeccccHHHHHHHhhccCceeEEEecccC
Confidence 14666677633 33444444 677889999999
Q ss_pred ceEEEEEecCCcccccccCCCceeEEEEeCCCceeeeeccCCCCCCCCCccCCccCCCceeeeecCCCceEEEEEeccCC
Q 004475 187 KYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRG 266 (751)
Q Consensus 187 ~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~spdG~~~i~~~~~~~~~ 266 (751)
..++....+. ..+-.||++++..+ + .+.....++|+.+|+|-..+ |+++.
T Consensus 123 ~t~l~s~sDd------------~v~k~~d~s~a~v~-~-----------~l~~htDYVR~g~~~~~~~h-ivvtG----- 172 (487)
T KOG0310|consen 123 NTMLVSGSDD------------KVVKYWDLSTAYVQ-A-----------ELSGHTDYVRCGDISPANDH-IVVTG----- 172 (487)
T ss_pred CeEEEecCCC------------ceEEEEEcCCcEEE-E-----------EecCCcceeEeeccccCCCe-EEEec-----
Confidence 9888876552 34567888887652 1 12233467889999999998 77643
Q ss_pred CCccccCcccceeeccCCCCCCCCceEeEeeceeEE-EEEecCCceEEEeeeecccceeEEEecCCCCCCcceeeeec--
Q 004475 267 DANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFS-VSWCDDSLALVNETWYKTSQTRTWLVCPGSKDVAPRVLFDR-- 343 (751)
Q Consensus 267 ~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~-~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~-- 343 (751)
...+.+.++|+... + ....-......+. +-+-|.|..|+.+. ...+-++|+.++ . +.++..
T Consensus 173 ------sYDg~vrl~DtR~~-~-~~v~elnhg~pVe~vl~lpsgs~iasAg-----Gn~vkVWDl~~G-~--qll~~~~~ 236 (487)
T KOG0310|consen 173 ------SYDGKVRLWDTRSL-T-SRVVELNHGCPVESVLALPSGSLIASAG-----GNSVKVWDLTTG-G--QLLTSMFN 236 (487)
T ss_pred ------CCCceEEEEEeccC-C-ceeEEecCCCceeeEEEcCCCCEEEEcC-----CCeEEEEEecCC-c--eehhhhhc
Confidence 13457777777411 1 1111123333455 77889999887644 245666677654 2 222211
Q ss_pred ccccccCCCCCCCeeeCCCCCEEEEeeeecCCcceEEEEccCCCCCCCCCceeEEEecCCCceeEEeeccchhhhhceee
Q 004475 344 VFENVYSDPGSPMMTRTSTGTNVIAKIKKENDEQIYILLNGRGFTPEGNIPFLDLFDINTGSKERIWESNREKYFETAVA 423 (751)
Q Consensus 344 ~~~~~~~~~~~~~~~~spDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~ 423 (751)
....+.. +.+..|++.|+..+.+. ++.++|..+-+..-=|.-.+. +
T Consensus 237 H~KtVTc------L~l~s~~~rLlS~sLD~---------------------~VKVfd~t~~Kvv~s~~~~~p-----v-- 282 (487)
T KOG0310|consen 237 HNKTVTC------LRLASDSTRLLSGSLDR---------------------HVKVFDTTNYKVVHSWKYPGP-----V-- 282 (487)
T ss_pred ccceEEE------EEeecCCceEeeccccc---------------------ceEEEEccceEEEEeeecccc-----e--
Confidence 1111222 66788999998888553 777888643332211221111 1
Q ss_pred eecCCcceeeccCCCEEEEEEe
Q 004475 424 LVFGQGEEDINLNQLKILTSKE 445 (751)
Q Consensus 424 ~~~~~~~~~~s~dg~~l~~~~~ 445 (751)
=.+++|||++.++.-.+
T Consensus 283 -----Lsiavs~dd~t~viGms 299 (487)
T KOG0310|consen 283 -----LSIAVSPDDQTVVIGMS 299 (487)
T ss_pred -----eeEEecCCCceEEEecc
Confidence 12688999998887643
No 284
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=98.15 E-value=4.9e-05 Score=78.49 Aligned_cols=167 Identities=13% Similarity=0.147 Sum_probs=92.7
Q ss_pred eEEEEEcCCCCc-------eecCCC-ceEEeeeeCCCCceEEEEEecCCcccccccCCCceeEEEEeCCCceee-eeccC
Q 004475 157 AQLVLGSLDGTA-------KDFGTP-AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVR-ELCDL 227 (751)
Q Consensus 157 ~~l~~~~~~G~~-------~~lt~~-~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~-~l~~~ 227 (751)
-.||.+...|-. ..||-+ .-+..+.|.|=---++.++. .+..|.+||+.+...+ .|
T Consensus 652 i~lWr~~a~gl~e~~~tPe~~lt~h~eKI~slRfHPLAadvLa~as------------yd~Ti~lWDl~~~~~~~~l--- 716 (1012)
T KOG1445|consen 652 INLWRLTANGLPENEMTPEKILTIHGEKITSLRFHPLAADVLAVAS------------YDSTIELWDLANAKLYSRL--- 716 (1012)
T ss_pred EEEEEeccCCCCcccCCcceeeecccceEEEEEecchhhhHhhhhh------------ccceeeeeehhhhhhhhee---
Confidence 467777775511 233434 55667788774432222211 2456889999865433 33
Q ss_pred CCCCCCCCccCCccCCCceeeeecCCCceEEEEEeccCCCCccccCcccceeeccCCCCCCCCceEeEeeceeE----E-
Q 004475 228 PPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRF----S- 302 (751)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~spdG~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~----~- 302 (751)
.....++.+++|||||+. ++-.- ..+.|+++.-. +..+.+.++.+.. .
T Consensus 717 ----------~gHtdqIf~~AWSpdGr~-~AtVc------------KDg~~rVy~Pr----s~e~pv~Eg~gpvgtRgAR 769 (1012)
T KOG1445|consen 717 ----------VGHTDQIFGIAWSPDGRR-IATVC------------KDGTLRVYEPR----SREQPVYEGKGPVGTRGAR 769 (1012)
T ss_pred ----------ccCcCceeEEEECCCCcc-eeeee------------cCceEEEeCCC----CCCCccccCCCCccCccee
Confidence 233345779999999999 44322 23577777642 2333444443322 2
Q ss_pred EEEecCCceEEEeeeecccceeEEEecCCCCCCcceeeeecccccccCCCCCCCeeeCCCCCEEEEee
Q 004475 303 VSWCDDSLALVNETWYKTSQTRTWLVCPGSKDVAPRVLFDRVFENVYSDPGSPMMTRTSTGTNVIAKI 370 (751)
Q Consensus 303 ~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~spDG~~l~~~~ 370 (751)
+.|.-||++|+...-......+|-++++++- ....|..... ...+..-.+.+.+|...|+...
T Consensus 770 i~wacdgr~viv~Gfdk~SeRQv~~Y~Aq~l--~~~pl~t~~l---Dvaps~LvP~YD~Ds~~lfltG 832 (1012)
T KOG1445|consen 770 ILWACDGRIVIVVGFDKSSERQVQMYDAQTL--DLRPLYTQVL---DVAPSPLVPHYDYDSNVLFLTG 832 (1012)
T ss_pred EEEEecCcEEEEecccccchhhhhhhhhhhc--cCCcceeeee---cccCccccccccCCCceEEEec
Confidence 7899999998876644444566777776653 2122221111 1111222255788887665555
No 285
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=98.11 E-value=0.00079 Score=66.40 Aligned_cols=59 Identities=12% Similarity=0.267 Sum_probs=43.0
Q ss_pred ceEEeeeeCCCCceEEEEEecCCcccccccCCCceeEEEEeCCCceeeeeccCCCCCCCCCccCCccCCCceeeeecCCC
Q 004475 175 AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKP 254 (751)
Q Consensus 175 ~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~spdG~ 254 (751)
.++.+.+|+||+.++.+.+.++ .+++||+..+...... ..+..++..++|.|-++
T Consensus 124 ~diydL~Ws~d~~~l~s~s~dn-------------s~~l~Dv~~G~l~~~~------------~dh~~yvqgvawDpl~q 178 (434)
T KOG1009|consen 124 DDIYDLAWSPDSNFLVSGSVDN-------------SVRLWDVHAGQLLAIL------------DDHEHYVQGVAWDPLNQ 178 (434)
T ss_pred cchhhhhccCCCceeeeeeccc-------------eEEEEEeccceeEeec------------cccccccceeecchhhh
Confidence 6778899999999999887654 5789999877655331 22334455789999988
Q ss_pred ceEEE
Q 004475 255 STLYW 259 (751)
Q Consensus 255 ~~i~~ 259 (751)
+ |+-
T Consensus 179 y-v~s 182 (434)
T KOG1009|consen 179 Y-VAS 182 (434)
T ss_pred h-hhh
Confidence 7 444
No 286
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=98.09 E-value=0.00034 Score=67.88 Aligned_cols=246 Identities=13% Similarity=0.091 Sum_probs=144.7
Q ss_pred cccceeecCCCCeEEEEEeecccccccCCceeEEEEEcCCCCeeeccCCCCccccceeeeeEEecCCcEEEEeecCCCCC
Q 004475 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRD 111 (751)
Q Consensus 32 ~~~~p~~SPDG~~iaf~~~~~~~~~~~~~~~~l~i~~~~~g~~~~lt~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~ 111 (751)
.+...-+.|+=-.++. . .....|+++|..+|+..+-..+... ++..++++..|+.|+-.+.+
T Consensus 110 ~vt~v~~hp~~~~v~~-a---------s~d~tikv~D~~tg~~e~~LrGHt~----sv~di~~~a~Gk~l~tcSsD---- 171 (406)
T KOG0295|consen 110 SVTRVIFHPSEALVVS-A---------SEDATIKVFDTETGELERSLRGHTD----SVFDISFDASGKYLATCSSD---- 171 (406)
T ss_pred ceeeeeeccCceEEEE-e---------cCCceEEEEEccchhhhhhhhcccc----ceeEEEEecCccEEEecCCc----
Confidence 4666778887544433 2 3447899999999986443333322 36788999999988877443
Q ss_pred CCCCCCCCCCCceeeccccccccchhhhhccCCccchhhhhhheeeEEEEEcCCC---CceecCCC-ceEEeeeeCCCCc
Q 004475 112 PPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSLDG---TAKDFGTP-AVYTAVEPSPDQK 187 (751)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~G---~~~~lt~~-~~~~~~~~SpDG~ 187 (751)
-++.++|.++ ..+.+..+ ..+..+.|-|-|.
T Consensus 172 ---------------------------------------------l~~~LWd~~~~~~c~ks~~gh~h~vS~V~f~P~gd 206 (406)
T KOG0295|consen 172 ---------------------------------------------LSAKLWDFDTFFRCIKSLIGHEHGVSSVFFLPLGD 206 (406)
T ss_pred ---------------------------------------------cchhheeHHHHHHHHHHhcCcccceeeEEEEecCC
Confidence 1234445533 33333344 6788999999998
Q ss_pred eEEEEEecCCcccccccCCCceeEEEEeCCCceeeeeccCCCCCCCCCccCCccCCCceeeeecCCCceEEEEEeccCCC
Q 004475 188 YVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGD 267 (751)
Q Consensus 188 ~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~spdG~~~i~~~~~~~~~~ 267 (751)
+|+-.+.++ .+..|+.+++-.... |....+-++-+..+-||.- ++-.+
T Consensus 207 ~ilS~srD~-------------tik~We~~tg~cv~t------------~~~h~ewvr~v~v~~DGti-~As~s------ 254 (406)
T KOG0295|consen 207 HILSCSRDN-------------TIKAWECDTGYCVKT------------FPGHSEWVRMVRVNQDGTI-IASCS------ 254 (406)
T ss_pred eeeeccccc-------------ceeEEecccceeEEe------------ccCchHhEEEEEecCCeeE-EEecC------
Confidence 887665443 477899988753321 1222234556777777753 33322
Q ss_pred CccccCcccceeeccCCCCCCCCceEeEeeceeEE-EEEecCCceE--EEeee---------ecccceeEEEecCCCCCC
Q 004475 268 ANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFS-VSWCDDSLAL--VNETW---------YKTSQTRTWLVCPGSKDV 335 (751)
Q Consensus 268 ~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~-~~~spdg~~l--~~~~~---------~~~~~~~l~~~~~~~~~~ 335 (751)
....|.++.++. .....++...+..+. .+|.|...+= -.... ..+....|-+.|..++
T Consensus 255 ------~dqtl~vW~~~t--~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg-- 324 (406)
T KOG0295|consen 255 ------NDQTLRVWVVAT--KQCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTG-- 324 (406)
T ss_pred ------CCceEEEEEecc--chhhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCC--
Confidence 223555555531 222344555566666 7777764421 11110 0123345666666664
Q ss_pred cceeeeec--ccccccCCCCCCCeeeCCCCCEEEEeeeecCCcceEEEEccCCCCCCCCCceeEEEecCCCceeEEee
Q 004475 336 APRVLFDR--VFENVYSDPGSPMMTRTSTGTNVIAKIKKENDEQIYILLNGRGFTPEGNIPFLDLFDINTGSKERIWE 411 (751)
Q Consensus 336 ~~~~l~~~--~~~~~~~~~~~~~~~~spDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l~~ 411 (751)
..|... ..+++.. ++|+|-|++|+..+.+ ..|.+||+++++.-..+.
T Consensus 325 --~cL~tL~ghdnwVr~------~af~p~Gkyi~ScaDD---------------------ktlrvwdl~~~~cmk~~~ 373 (406)
T KOG0295|consen 325 --MCLFTLVGHDNWVRG------VAFSPGGKYILSCADD---------------------KTLRVWDLKNLQCMKTLE 373 (406)
T ss_pred --eEEEEEecccceeee------eEEcCCCeEEEEEecC---------------------CcEEEEEeccceeeeccC
Confidence 344333 2333444 8899999999888843 379999999876644443
No 287
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=98.08 E-value=0.0017 Score=60.47 Aligned_cols=172 Identities=12% Similarity=0.059 Sum_probs=96.1
Q ss_pred EEEEEcC-CC-CceecCCCceEEeeeeCCCCceEEEEEecCCcccccccCCCceeEEEEeCCCceeeeeccCCCCCCCCC
Q 004475 158 QLVLGSL-DG-TAKDFGTPAVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPV 235 (751)
Q Consensus 158 ~l~~~~~-~G-~~~~lt~~~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~ 235 (751)
.+.+||+ +| +...+..+..+....|+++|.++++..... ......+.++|+.........+.|.-
T Consensus 75 t~kLWDv~tGk~la~~k~~~~Vk~~~F~~~gn~~l~~tD~~--------mg~~~~v~~fdi~~~~~~~~s~ep~~----- 141 (327)
T KOG0643|consen 75 TAKLWDVETGKQLATWKTNSPVKRVDFSFGGNLILASTDKQ--------MGYTCFVSVFDIRDDSSDIDSEEPYL----- 141 (327)
T ss_pred eeEEEEcCCCcEEEEeecCCeeEEEeeccCCcEEEEEehhh--------cCcceEEEEEEccCChhhhcccCceE-----
Confidence 5666777 77 444554456788999999999999986553 11245677777763322221111100
Q ss_pred ccCCccCCCceeeeecCCCceEEEEEeccCCCCccccCcccceeeccCCCCCCCCceE-eEeeceeEE-EEEecCCceEE
Q 004475 236 CYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEI-LHKLDLRFS-VSWCDDSLALV 313 (751)
Q Consensus 236 ~~~~~~~~~~~~~~spdG~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~-l~~~~~~~~-~~~spdg~~l~ 313 (751)
.+......+...-|+|-|+. |+... ..+.|..+|+. ++..... .......+. ..+|+|..+++
T Consensus 142 kI~t~~skit~a~Wg~l~~~-ii~Gh------------e~G~is~~da~--~g~~~v~s~~~h~~~Ind~q~s~d~T~Fi 206 (327)
T KOG0643|consen 142 KIPTPDSKITSALWGPLGET-IIAGH------------EDGSISIYDAR--TGKELVDSDEEHSSKINDLQFSRDRTYFI 206 (327)
T ss_pred EecCCccceeeeeecccCCE-EEEec------------CCCcEEEEEcc--cCceeeechhhhccccccccccCCcceEE
Confidence 01111123446799999998 55532 23567777764 1211111 112333566 89999999887
Q ss_pred EeeeecccceeEEEecCCCCCCcceeeeecccccccCCCCCCCeeeCCCCCEEEEee
Q 004475 314 NETWYKTSQTRTWLVCPGSKDVAPRVLFDRVFENVYSDPGSPMMTRTSTGTNVIAKI 370 (751)
Q Consensus 314 ~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~spDG~~l~~~~ 370 (751)
.++. .....| +|..+-....+..++.+.+. .+.+|--..++...
T Consensus 207 T~s~--Dttakl--~D~~tl~v~Kty~te~PvN~---------aaisP~~d~VilgG 250 (327)
T KOG0643|consen 207 TGSK--DTTAKL--VDVRTLEVLKTYTTERPVNT---------AAISPLLDHVILGG 250 (327)
T ss_pred eccc--Ccccee--eeccceeeEEEeeecccccc---------eecccccceEEecC
Confidence 7662 222334 45544212233345555444 56788777776655
No 288
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=98.07 E-value=0.0044 Score=72.06 Aligned_cols=110 Identities=16% Similarity=0.135 Sum_probs=60.6
Q ss_pred CCceeeeecCCCceEEEEEeccCCCCccccCcccceeeccCCCCCCCCceEeEe-eceeEE-EEEecCCceEEEeeeecc
Q 004475 243 GMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHK-LDLRFS-VSWCDDSLALVNETWYKT 320 (751)
Q Consensus 243 ~~~~~~~spdG~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~-~~~~~~-~~~spdg~~l~~~~~~~~ 320 (751)
+.-.++|..||.+ ++..+...... .+..+.+++.+ |. ..-..+ .++--. ++|.|.|..|+.... ..
T Consensus 211 ~~~~ISWRGDG~y-FAVss~~~~~~------~~R~iRVy~Re---G~-L~stSE~v~gLe~~l~WrPsG~lIA~~q~-~~ 278 (928)
T PF04762_consen 211 GRVRISWRGDGEY-FAVSSVEPETG------SRRVIRVYSRE---GE-LQSTSEPVDGLEGALSWRPSGNLIASSQR-LP 278 (928)
T ss_pred CceEEEECCCCcE-EEEEEEEcCCC------ceeEEEEECCC---ce-EEeccccCCCccCCccCCCCCCEEEEEEE-cC
Confidence 4457999999998 55544211111 24577778775 32 211112 222233 899999999887764 33
Q ss_pred cceeEEEecCCCCCCcceeeee-cccccccCCCCCCCeeeCCCCCEEEEee
Q 004475 321 SQTRTWLVCPGSKDVAPRVLFD-RVFENVYSDPGSPMMTRTSTGTNVIAKI 370 (751)
Q Consensus 321 ~~~~l~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~spDG~~l~~~~ 370 (751)
....|.....+|-.-..-.|.. .....+.. +.|++|+..|+...
T Consensus 279 ~~~~VvFfErNGLrhgeF~l~~~~~~~~v~~------l~Wn~ds~iLAv~~ 323 (928)
T PF04762_consen 279 DRHDVVFFERNGLRHGEFTLRFDPEEEKVIE------LAWNSDSEILAVWL 323 (928)
T ss_pred CCcEEEEEecCCcEeeeEecCCCCCCceeeE------EEECCCCCEEEEEe
Confidence 3355656665553100011111 11111111 88999999999877
No 289
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=98.06 E-value=0.00049 Score=74.16 Aligned_cols=67 Identities=21% Similarity=0.348 Sum_probs=41.7
Q ss_pred CceecCCCceEEeeeeCCCCceEEEEEecCCcccccccCCCceeEEEEeCCCceeeeeccCCCCCCCCCccCCccCCCce
Q 004475 167 TAKDFGTPAVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRS 246 (751)
Q Consensus 167 ~~~~lt~~~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 246 (751)
-...+.....+..++|.|-..+.+++. .....+.+|++...++..-++.. .-+.+
T Consensus 402 CL~~F~HndfVTcVaFnPvDDryFiSG------------SLD~KvRiWsI~d~~Vv~W~Dl~-------------~lITA 456 (712)
T KOG0283|consen 402 CLKVFSHNDFVTCVAFNPVDDRYFISG------------SLDGKVRLWSISDKKVVDWNDLR-------------DLITA 456 (712)
T ss_pred eeeEEecCCeeEEEEecccCCCcEeec------------ccccceEEeecCcCeeEeehhhh-------------hhhee
Confidence 334444337788999999444443432 22456889998776655433322 23568
Q ss_pred eeeecCCCceEE
Q 004475 247 ISWRADKPSTLY 258 (751)
Q Consensus 247 ~~~spdG~~~i~ 258 (751)
++++|||++.|+
T Consensus 457 vcy~PdGk~avI 468 (712)
T KOG0283|consen 457 VCYSPDGKGAVI 468 (712)
T ss_pred EEeccCCceEEE
Confidence 899999998433
No 290
>PF12146 Hydrolase_4: Putative lysophospholipase; InterPro: IPR022742 This domain is found in bacteria and eukaryotes and is approximately 110 amino acids in length. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins.
Probab=98.05 E-value=1.4e-05 Score=62.00 Aligned_cols=75 Identities=17% Similarity=0.185 Sum_probs=54.9
Q ss_pred CceEEEEEEcCCCCCCCCCCCccEEEEEcCCCCcCcccCCcccCCCCccCCCCchHHHHHHhCCeEEEEcCCCCCCCCCC
Q 004475 491 GVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGPSIPIIGEGD 570 (751)
Q Consensus 491 ~~~i~~~~~~P~~~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~v~~~~~~~~~g~g~ 570 (751)
|.++.+..|.|++ + ++++|+++||.+ .....+..++..|+++||.|++ .|.+|+|.
T Consensus 1 G~~L~~~~w~p~~-----~-~k~~v~i~HG~~---------------eh~~ry~~~a~~L~~~G~~V~~---~D~rGhG~ 56 (79)
T PF12146_consen 1 GTKLFYRRWKPEN-----P-PKAVVVIVHGFG---------------EHSGRYAHLAEFLAEQGYAVFA---YDHRGHGR 56 (79)
T ss_pred CcEEEEEEecCCC-----C-CCEEEEEeCCcH---------------HHHHHHHHHHHHHHhCCCEEEE---ECCCcCCC
Confidence 4578899999986 2 478999999953 2333445678899999999999 77889998
Q ss_pred CCCCc---hhHHHHHHHHHHHH
Q 004475 571 KLPND---RFVEQLVSSAEAAV 589 (751)
Q Consensus 571 ~~~~~---~~~~~~~~d~~~~v 589 (751)
+.... ...++.++|+...+
T Consensus 57 S~g~rg~~~~~~~~v~D~~~~~ 78 (79)
T PF12146_consen 57 SEGKRGHIDSFDDYVDDLHQFI 78 (79)
T ss_pred CCCcccccCCHHHHHHHHHHHh
Confidence 86532 23466677776665
No 291
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=98.05 E-value=0.0023 Score=61.07 Aligned_cols=231 Identities=10% Similarity=0.088 Sum_probs=120.7
Q ss_pred eEEEEEcC-CC-CceecCCC-ceEEeeeeCCCCceEEEEEecCCcccccccCCCceeEEEEeCCCcee-eeeccCCCCCC
Q 004475 157 AQLVLGSL-DG-TAKDFGTP-AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLV-RELCDLPPAED 232 (751)
Q Consensus 157 ~~l~~~~~-~G-~~~~lt~~-~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~-~~l~~~~~~~~ 232 (751)
+.|.++|+ +- -.+.++.+ ..+.+++||+||+.|+.++.+. .+-+||+-.+.. .++ -
T Consensus 45 G~vvI~D~~T~~iar~lsaH~~pi~sl~WS~dgr~LltsS~D~-------------si~lwDl~~gs~l~ri---r---- 104 (405)
T KOG1273|consen 45 GRVVIYDFDTFRIARMLSAHVRPITSLCWSRDGRKLLTSSRDW-------------SIKLWDLLKGSPLKRI---R---- 104 (405)
T ss_pred CcEEEEEccccchhhhhhccccceeEEEecCCCCEeeeecCCc-------------eeEEEeccCCCceeEE---E----
Confidence 46777777 33 44555556 7888999999999998876543 577899865542 221 0
Q ss_pred CCCccCCccCCCceeeeecCCCceEEEEEeccCCCCccccCcccceeeccCCCCCCCCceEeEe-eceeEE-----EEEe
Q 004475 233 IPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHK-LDLRFS-----VSWC 306 (751)
Q Consensus 233 ~~~~~~~~~~~~~~~~~spdG~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~-~~~~~~-----~~~s 306 (751)
|. .-+....|.|-.+...+.+-. +..-+++++. ....+.|.. .++... ..|.
T Consensus 105 ----f~---spv~~~q~hp~k~n~~va~~~------------~~sp~vi~~s---~~~h~~Lp~d~d~dln~sas~~~fd 162 (405)
T KOG1273|consen 105 ----FD---SPVWGAQWHPRKRNKCVATIM------------EESPVVIDFS---DPKHSVLPKDDDGDLNSSASHGVFD 162 (405)
T ss_pred ----cc---CccceeeeccccCCeEEEEEe------------cCCcEEEEec---CCceeeccCCCcccccccccccccc
Confidence 00 012355788877662333221 1122333332 112222221 122221 3478
Q ss_pred cCCceEEEeeeecccceeEEEecCCCCCCcceeeeeccc-ccccCCCCCCCeeeCCCCCEEEEeeeecCCcceEEEEccC
Q 004475 307 DDSLALVNETWYKTSQTRTWLVCPGSKDVAPRVLFDRVF-ENVYSDPGSPMMTRTSTGTNVIAKIKKENDEQIYILLNGR 385 (751)
Q Consensus 307 pdg~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~spDG~~l~~~~~~~~~~~~~~~~~~~ 385 (751)
+-|++|+.+. ....|.+++.++- +.+.-..... +..-. +-++..|+.|++...+
T Consensus 163 r~g~yIitGt----sKGkllv~~a~t~--e~vas~rits~~~IK~------I~~s~~g~~liiNtsD------------- 217 (405)
T KOG1273|consen 163 RRGKYIITGT----SKGKLLVYDAETL--ECVASFRITSVQAIKQ------IIVSRKGRFLIINTSD------------- 217 (405)
T ss_pred CCCCEEEEec----CcceEEEEecchh--eeeeeeeechheeeeE------EEEeccCcEEEEecCC-------------
Confidence 8899888755 2356777888773 2211111111 11111 6688899988887733
Q ss_pred CCCCCCCCceeEEEecCC----CceeEEeeccchhhhhce--eeeecCCcceeeccCCCEEEEEEecCCCCCeEEEEEcC
Q 004475 386 GFTPEGNIPFLDLFDINT----GSKERIWESNREKYFETA--VALVFGQGEEDINLNQLKILTSKESKTEITQYHILSWP 459 (751)
Q Consensus 386 ~~~~~~~~~~l~~~d~~~----g~~~~l~~~~~~~~~~~~--~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~l~~~~~~ 459 (751)
+.|+.++.+. |+-..+... .+ ..+-+ ..+ ..+-||-||.+++... ...-.||++.-.
T Consensus 218 --------RvIR~ye~~di~~~~r~~e~e~~-~K-~qDvVNk~~W----k~ccfs~dgeYv~a~s---~~aHaLYIWE~~ 280 (405)
T KOG1273|consen 218 --------RVIRTYEISDIDDEGRDGEVEPE-HK-LQDVVNKLQW----KKCCFSGDGEYVCAGS---ARAHALYIWEKS 280 (405)
T ss_pred --------ceEEEEehhhhcccCccCCcChh-HH-HHHHHhhhhh----hheeecCCccEEEecc---ccceeEEEEecC
Confidence 2556666541 111111100 00 00000 011 1267888887665443 223469999888
Q ss_pred CCceeEeecCCC
Q 004475 460 LKKSSQITNFPH 471 (751)
Q Consensus 460 ~g~~~~lt~~~~ 471 (751)
.|...++.+-+.
T Consensus 281 ~GsLVKILhG~k 292 (405)
T KOG1273|consen 281 IGSLVKILHGTK 292 (405)
T ss_pred CcceeeeecCCc
Confidence 888888776553
No 292
>PF06028 DUF915: Alpha/beta hydrolase of unknown function (DUF915); InterPro: IPR010315 This family consists of bacterial proteins of unknown function, which are hydrolase-like.; PDB: 3LP5_A 3FLE_A 3DS8_A.
Probab=98.04 E-value=0.0001 Score=71.40 Aligned_cols=151 Identities=13% Similarity=0.038 Sum_probs=98.4
Q ss_pred HHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCC-----ceeEEEEccCCCCCCCCccCc-----cc
Q 004475 578 VEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPH-----LFCCGIARSGSYNKTLTPFGF-----QT 647 (751)
Q Consensus 578 ~~~~~~d~~~~v~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~p~-----~~~~~v~~~~~~d~~~~~~~~-----~~ 647 (751)
.......+..++.+|+++..+ .++-++||||||..++.++..+.. .+..+|++++.++-....... ..
T Consensus 82 ~~~qa~wl~~vl~~L~~~Y~~--~~~N~VGHSmGg~~~~~yl~~~~~~~~~P~l~K~V~Ia~pfng~~~~~~~~~~~~~~ 159 (255)
T PF06028_consen 82 YKKQAKWLKKVLKYLKKKYHF--KKFNLVGHSMGGLSWTYYLENYGNDKNLPKLNKLVTIAGPFNGILGMNDDQNQNDLN 159 (255)
T ss_dssp HHHHHHHHHHHHHHHHHCC----SEEEEEEETHHHHHHHHHHHHCTTGTTS-EEEEEEEES--TTTTTCCSC-TTTT-CS
T ss_pred HHHHHHHHHHHHHHHHHhcCC--CEEeEEEECccHHHHHHHHHHhccCCCCcccceEEEeccccCccccccccchhhhhc
Confidence 455678889999999998765 589999999999999999987522 478889888887743221100 00
Q ss_pred ccccchhhHHHHHhcCcc--cccCCCCCCEEEEEcC------CCCCCCCChHHHHHHHHHHHhCCCcEEEEEeCC--CCC
Q 004475 648 EFRTLWEATNVYIEMSPI--THANKIKKPILIIHGE------VDDKVGLFPMQAERFFDALKGHGALSRLVLLPF--EHH 717 (751)
Q Consensus 648 ~~~~~~~~~~~~~~~~~~--~~~~~~~~P~li~~G~------~D~~vp~~~~~~~~~~~~l~~~~~~~~~~~~~~--~~H 717 (751)
..+ +-.....|...-.. .+++ -.+.+|-|.|. .|..|| ...++.+...++......+-.++.| +.|
T Consensus 160 ~~g-p~~~~~~y~~l~~~~~~~~p-~~i~VLnI~G~~~~g~~sDG~V~--~~Ss~sl~~L~~~~~~~Y~e~~v~G~~a~H 235 (255)
T PF06028_consen 160 KNG-PKSMTPMYQDLLKNRRKNFP-KNIQVLNIYGDLEDGSNSDGIVP--NASSLSLRYLLKNRAKSYQEKTVTGKDAQH 235 (255)
T ss_dssp TT--BSS--HHHHHHHHTHGGGST-TT-EEEEEEEESBTTCSBTSSSB--HHHHCTHHHHCTTTSSEEEEEEEESGGGSC
T ss_pred ccC-CcccCHHHHHHHHHHHhhCC-CCeEEEEEecccCCCCCCCeEEe--HHHHHHHHHHhhcccCceEEEEEECCCCcc
Confidence 111 22222333332222 1121 24679999998 799999 8998888888877767777788866 578
Q ss_pred cCCccccHHHHHHHHHHHH
Q 004475 718 VYAARENVMHVIWETDRWL 736 (751)
Q Consensus 718 ~~~~~~~~~~~~~~~~~fl 736 (751)
.-. .+..++.+.+.+||
T Consensus 236 S~L--heN~~V~~~I~~FL 252 (255)
T PF06028_consen 236 SQL--HENPQVDKLIIQFL 252 (255)
T ss_dssp CGG--GCCHHHHHHHHHHH
T ss_pred ccC--CCCHHHHHHHHHHh
Confidence 754 23446777888887
No 293
>TIGR03502 lipase_Pla1_cef extracellular lipase, Pla-1/cef family. Members of this protein family are bacterial lipoproteins largely from the Gammaproteobacteria. Characterized members are expressed in extracellularly and have esterase activity. Members include the lipase Pla-1 from Aeromonas hydrophila (AF092033) and CHO cell elongation factor (cef) from Vibrio hollisae
Probab=98.04 E-value=3.2e-05 Score=85.95 Aligned_cols=93 Identities=18% Similarity=0.166 Sum_probs=64.1
Q ss_pred ccEEEEEcCCCCcCcccCCcccCCCCccCCCCchHHHHHHhCCeEEEEcCCCCCCCCCCCCCC-----------------
Q 004475 512 LPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGPSIPIIGEGDKLPN----------------- 574 (751)
Q Consensus 512 ~P~vv~~HGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~v~~~~~~~~~g~g~~~~~----------------- 574 (751)
.|+||++||-+ +... ....++..|+++||.|++ ++.+|||.+...
T Consensus 449 ~P~VVllHG~~-----------g~~~----~~~~lA~~La~~Gy~VIa---iDlpGHG~S~~~~~~~~~~a~~~~~~~y~ 510 (792)
T TIGR03502 449 WPVVIYQHGIT-----------GAKE----NALAFAGTLAAAGVATIA---IDHPLHGARSFDANASGVNATNANVLAYM 510 (792)
T ss_pred CcEEEEeCCCC-----------CCHH----HHHHHHHHHHhCCcEEEE---eCCCCCCccccccccccccccccCcccee
Confidence 68999999942 1111 112456677889999999 555666665211
Q ss_pred --------chhHHHHHHHHHHHHHHHH------Hc----CCCCCCcEEEEEeChHHHHHHHHHHhC
Q 004475 575 --------DRFVEQLVSSAEAAVEEVV------RR----GVADPSRIAVGGHSYGAFMTAHLLAHA 622 (751)
Q Consensus 575 --------~~~~~~~~~d~~~~v~~l~------~~----~~id~~~i~l~G~S~GG~~a~~~a~~~ 622 (751)
..-..+.+.|+......+. +. ...+..++.++||||||.++..++...
T Consensus 511 Nl~~l~~aRDn~rQ~v~Dll~L~~~l~~~~~~~~~~~~~~~~~~~~V~~lGHSLGgiig~~~~~~a 576 (792)
T TIGR03502 511 NLASLLVARDNLRQSILDLLGLRLSLNGSALAGAPLSGINVIDGSKVSFLGHSLGGIVGTSFIAYA 576 (792)
T ss_pred ccccccccccCHHHHHHHHHHHHHHHhcccccccccccccCCCCCcEEEEecCHHHHHHHHHHHhc
Confidence 0124667788888888776 21 125668999999999999999998764
No 294
>KOG3253 consensus Predicted alpha/beta hydrolase [General function prediction only]
Probab=98.04 E-value=0.00015 Score=75.30 Aligned_cols=122 Identities=16% Similarity=0.215 Sum_probs=83.1
Q ss_pred CCCCCCcEEEEEeChHHHHHHHHHHhCCC-ceeEEEEccCCCCCCCCccCcccccccchhhHHHHHhcCcccccCCCCCC
Q 004475 596 GVADPSRIAVGGHSYGAFMTAHLLAHAPH-LFCCGIARSGSYNKTLTPFGFQTEFRTLWEATNVYIEMSPITHANKIKKP 674 (751)
Q Consensus 596 ~~id~~~i~l~G~S~GG~~a~~~a~~~p~-~~~~~v~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P 674 (751)
+......|+|+|+|||+.++.++...+-+ .+.++|++.=.++-..-+-+... ..+..++.|
T Consensus 245 gefpha~IiLvGrsmGAlVachVSpsnsdv~V~~vVCigypl~~vdgprgirD------------------E~Lldmk~P 306 (784)
T KOG3253|consen 245 GEFPHAPIILVGRSMGALVACHVSPSNSDVEVDAVVCIGYPLDTVDGPRGIRD------------------EALLDMKQP 306 (784)
T ss_pred ccCCCCceEEEecccCceeeEEeccccCCceEEEEEEecccccCCCcccCCcc------------------hhhHhcCCc
Confidence 44556789999999999988888776533 47778877655442221111111 123457899
Q ss_pred EEEEEcCCCCCCCCChHHHHHHHHHHHhCCCcEEEEEeCCCCCcCCccc--------cHHHHHHHHHHHHHHHh
Q 004475 675 ILIIHGEVDDKVGLFPMQAERFFDALKGHGALSRLVLLPFEHHVYAARE--------NVMHVIWETDRWLQKYC 740 (751)
Q Consensus 675 ~li~~G~~D~~vp~~~~~~~~~~~~l~~~~~~~~~~~~~~~~H~~~~~~--------~~~~~~~~~~~fl~~~l 740 (751)
+|++.|..|..++ +...+++.+++++ .++++++.+++|.+--.. .+..+-..+.+|+.+.+
T Consensus 307 VLFV~Gsnd~mcs--pn~ME~vreKMqA---~~elhVI~~adhsmaipk~k~esegltqseVd~~i~~aI~efv 375 (784)
T KOG3253|consen 307 VLFVIGSNDHMCS--PNSMEEVREKMQA---EVELHVIGGADHSMAIPKRKVESEGLTQSEVDSAIAQAIKEFV 375 (784)
T ss_pred eEEEecCCcccCC--HHHHHHHHHHhhc---cceEEEecCCCccccCCccccccccccHHHHHHHHHHHHHHHH
Confidence 9999999999988 8888888888765 468999999999874322 23344445555555443
No 295
>PF05677 DUF818: Chlamydia CHLPS protein (DUF818); InterPro: IPR008536 This family of unknown function includes several Chlamydia CHLPS proteins and Legionella SidB proteins.
Probab=98.01 E-value=0.00011 Score=71.78 Aligned_cols=124 Identities=18% Similarity=0.151 Sum_probs=82.1
Q ss_pred ceEEEEEEcCCCceEEEEEEcCCCCCCCCCCCccEEEEEcCCCCcCcccCCcccCCCCccCCCCchHHHHHH-hCCeEEE
Q 004475 480 QKEMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFL-ARRFAVL 558 (751)
Q Consensus 480 ~~e~i~~~~~~~~~i~~~~~~P~~~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~G~~v~ 558 (751)
..+++.+.. |+..|.+..+.=+.+. +..-||++-|.|....+ ..+..........++ ..|..|+
T Consensus 111 ~~kRv~Iq~-D~~~IDt~~I~~~~a~-----~~RWiL~s~GNg~~~E~---------~~~~~~~~~~~~~~ak~~~aNvl 175 (365)
T PF05677_consen 111 SVKRVPIQY-DGVKIDTMAIHQPEAK-----PQRWILVSNGNGECYEN---------RAMLDYKDDWIQRFAKELGANVL 175 (365)
T ss_pred ceeeEEEee-CCEEEEEEEeeCCCCC-----CCcEEEEEcCChHHhhh---------hhhhccccHHHHHHHHHcCCcEE
Confidence 567777775 7888888776522221 24578888885421100 000000112233344 5799999
Q ss_pred EcCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHHHHcC-CCCCCcEEEEEeChHHHHHHHHHHhC
Q 004475 559 AGPSIPIIGEGDKLPNDRFVEQLVSSAEAAVEEVVRRG-VADPSRIAVGGHSYGAFMTAHLLAHA 622 (751)
Q Consensus 559 ~~~~~~~~g~g~~~~~~~~~~~~~~d~~~~v~~l~~~~-~id~~~i~l~G~S~GG~~a~~~a~~~ 622 (751)
. +.++|.|.+.+... ..+++.|..+.++||+++. .+.+++|++.|||.||.++..++.++
T Consensus 176 ~---fNYpGVg~S~G~~s-~~dLv~~~~a~v~yL~d~~~G~ka~~Ii~yG~SLGG~Vqa~AL~~~ 236 (365)
T PF05677_consen 176 V---FNYPGVGSSTGPPS-RKDLVKDYQACVRYLRDEEQGPKAKNIILYGHSLGGGVQAEALKKE 236 (365)
T ss_pred E---ECCCccccCCCCCC-HHHHHHHHHHHHHHHHhcccCCChheEEEeeccccHHHHHHHHHhc
Confidence 9 55567776655554 4899999999999999753 47889999999999999998766554
No 296
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=98.00 E-value=0.0031 Score=74.79 Aligned_cols=229 Identities=9% Similarity=0.044 Sum_probs=118.3
Q ss_pred EEeeeeCCCCceEEEEEecCCcccccccCCCceeEEEEeCCCceeeeeccCC--C---CCCCCCccCCccCCCceeeeec
Q 004475 177 YTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLP--P---AEDIPVCYNSVREGMRSISWRA 251 (751)
Q Consensus 177 ~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~--~---~~~~~~~~~~~~~~~~~~~~sp 251 (751)
...++++++|..|+++... +..|.++|..++..+.+.... + ..+... ....-.....++++|
T Consensus 626 P~GIavd~~gn~LYVaDt~------------n~~Ir~id~~~~~V~tlag~G~~g~~~~gg~~~-~~~~ln~P~gVa~dp 692 (1057)
T PLN02919 626 PQGLAYNAKKNLLYVADTE------------NHALREIDFVNETVRTLAGNGTKGSDYQGGKKG-TSQVLNSPWDVCFEP 692 (1057)
T ss_pred CcEEEEeCCCCEEEEEeCC------------CceEEEEecCCCEEEEEeccCcccCCCCCChhh-hHhhcCCCeEEEEec
Confidence 4578899999888876432 345778888877766653211 0 000000 000011245789999
Q ss_pred CCCceEEEEEeccCCCCccccCcccceeeccCCCCCCCCceEeEe---------------eceeEE-EEEecCCceEEEe
Q 004475 252 DKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHK---------------LDLRFS-VSWCDDSLALVNE 315 (751)
Q Consensus 252 dG~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~---------------~~~~~~-~~~spdg~~l~~~ 315 (751)
++.. ++++.. ...+|++++.. ++....+.. .-.... ++++|||+.|+++
T Consensus 693 ~~g~-LyVad~-----------~~~~I~v~d~~---~g~v~~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVA 757 (1057)
T PLN02919 693 VNEK-VYIAMA-----------GQHQIWEYNIS---DGVTRVFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIA 757 (1057)
T ss_pred CCCe-EEEEEC-----------CCCeEEEEECC---CCeEEEEecCCccccCCCCccccccccCccEEEEeCCCCEEEEE
Confidence 7666 565431 22356666553 111111110 001122 7899999988765
Q ss_pred eeecccceeEEEecCCCCCCcceeeeeccc---cccc-----------CCCCCC-CeeeCCCCCEEEEeeeecCCcceEE
Q 004475 316 TWYKTSQTRTWLVCPGSKDVAPRVLFDRVF---ENVY-----------SDPGSP-MMTRTSTGTNVIAKIKKENDEQIYI 380 (751)
Q Consensus 316 ~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~---~~~~-----------~~~~~~-~~~~spDG~~l~~~~~~~~~~~~~~ 380 (751)
. .....|.+++++++ ....+..... .... .....| .+++++||+ |++..
T Consensus 758 D---s~n~~Irv~D~~tg--~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~-LYVAD---------- 821 (1057)
T PLN02919 758 D---SESSSIRALDLKTG--GSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQ-IYVAD---------- 821 (1057)
T ss_pred E---CCCCeEEEEECCCC--cEEEEEecccccCcccccccCCCCchhhhhccCCceeeEeCCCc-EEEEE----------
Confidence 4 23457888888764 2222211100 0000 000111 256778886 33333
Q ss_pred EEccCCCCCCCCCceeEEEecCCCceeEEeeccchhhhh--ceeeeecCCcceeeccCCCEEEEEEecCCCCCeEEEEEc
Q 004475 381 LLNGRGFTPEGNIPFLDLFDINTGSKERIWESNREKYFE--TAVALVFGQGEEDINLNQLKILTSKESKTEITQYHILSW 458 (751)
Q Consensus 381 ~~~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~--~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~l~~~~~ 458 (751)
..+..|.+||.+++....+.......+.+ ........+..+++++||+ ++++. + ....|.++|+
T Consensus 822 ----------s~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~-lyVaD-t--~Nn~Irvid~ 887 (1057)
T PLN02919 822 ----------SYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGR-LFVAD-T--NNSLIRYLDL 887 (1057)
T ss_pred ----------CCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCC-EEEEE-C--CCCEEEEEEC
Confidence 23458999999888776554321100000 0111122345579999997 44443 2 2346899999
Q ss_pred CCCce
Q 004475 459 PLKKS 463 (751)
Q Consensus 459 ~~g~~ 463 (751)
.+++.
T Consensus 888 ~~~~~ 892 (1057)
T PLN02919 888 NKGEA 892 (1057)
T ss_pred CCCcc
Confidence 88765
No 297
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=97.97 E-value=0.00023 Score=72.37 Aligned_cols=166 Identities=14% Similarity=0.211 Sum_probs=100.0
Q ss_pred cccceeecCCCCeEEEEEeecccccccCCceeEEEEEcCCCCeeeccCCCCccccceeeeeEEecCCcEEEEeecCCCCC
Q 004475 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRD 111 (751)
Q Consensus 32 ~~~~p~~SPDG~~iaf~~~~~~~~~~~~~~~~l~i~~~~~g~~~~lt~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~ 111 (751)
.+...+|||||.-|+.+. ..+.|-++.-.|--...+..... .+..++|.|+++.|+|...
T Consensus 106 A~~~gRW~~dGtgLlt~G----------EDG~iKiWSrsGMLRStl~Q~~~-----~v~c~~W~p~S~~vl~c~g----- 165 (737)
T KOG1524|consen 106 AISSGRWSPDGAGLLTAG----------EDGVIKIWSRSGMLRSTVVQNEE-----SIRCARWAPNSNSIVFCQG----- 165 (737)
T ss_pred hhhhcccCCCCceeeeec----------CCceEEEEeccchHHHHHhhcCc-----eeEEEEECCCCCceEEecC-----
Confidence 467789999999998863 23556666643322222222233 3678899999999999832
Q ss_pred CCCCCCCCCCCceeeccccccccchhhhhccCCccchhhhhhheeeEEEEEcC--CCCceecCCC-ceEEeeeeCCCCce
Q 004475 112 PPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL--DGTAKDFGTP-AVYTAVEPSPDQKY 188 (751)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~--~G~~~~lt~~-~~~~~~~~SpDG~~ 188 (751)
.++++-.+ .-++-+...+ +.+....|+|....
T Consensus 166 ---------------------------------------------~h~~IKpL~~n~k~i~WkAHDGiiL~~~W~~~s~l 200 (737)
T KOG1524|consen 166 ---------------------------------------------GHISIKPLAANSKIIRWRAHDGLVLSLSWSTQSNI 200 (737)
T ss_pred ---------------------------------------------CeEEEeecccccceeEEeccCcEEEEeecCccccc
Confidence 47777776 3355555555 67789999999987
Q ss_pred EEEEEecCCcccccccCCCceeEEEEeCCCceeeeeccCCCCCCCCCccCCccCCCceeeeecCCCceEEEEEeccCCCC
Q 004475 189 VLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDA 268 (751)
Q Consensus 189 i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~spdG~~~i~~~~~~~~~~~ 268 (751)
|+-... ....-+||..|..+-. . ..++.-+.+++|.||..+ +++.-
T Consensus 201 I~sgGE-------------D~kfKvWD~~G~~Lf~---S----------~~~ey~ITSva~npd~~~-~v~S~------- 246 (737)
T KOG1524|consen 201 IASGGE-------------DFRFKIWDAQGANLFT---S----------AAEEYAITSVAFNPEKDY-LLWSY------- 246 (737)
T ss_pred eeecCC-------------ceeEEeecccCccccc---C----------Chhccceeeeeeccccce-eeeee-------
Confidence 764321 2344578876653211 1 111223568999999433 33311
Q ss_pred ccccCcccceeeccCCCCCCCCceEeEeeceeEE-EEEecCCceEEEee
Q 004475 269 NVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFS-VSWCDDSLALVNET 316 (751)
Q Consensus 269 ~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~-~~~spdg~~l~~~~ 316 (751)
+.+. ++ ....+.+. .+||+||..++..+
T Consensus 247 -------nt~R---~~----------~p~~GSifnlsWS~DGTQ~a~gt 275 (737)
T KOG1524|consen 247 -------NTAR---FS----------SPRVGSIFNLSWSADGTQATCGT 275 (737)
T ss_pred -------eeee---ec----------CCCccceEEEEEcCCCceeeccc
Confidence 1111 11 11234455 89999999988765
No 298
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=97.97 E-value=0.00051 Score=65.08 Aligned_cols=174 Identities=13% Similarity=0.083 Sum_probs=94.6
Q ss_pred eecCCC-ceEEeeeeCCCCceEEEEEecCCcccccccCCCceeEEEEeCCCceeeeeccCCCCCCCCCccCCccCCCcee
Q 004475 169 KDFGTP-AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSI 247 (751)
Q Consensus 169 ~~lt~~-~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 247 (751)
+.|-++ ..+..+.|.|-..-|+-.+.+ ..+-++|......++-. ..-.+...+|.+
T Consensus 166 RTlYDH~devn~l~FHPre~ILiS~srD-------------~tvKlFDfsK~saKrA~----------K~~qd~~~vrsi 222 (430)
T KOG0640|consen 166 RTLYDHVDEVNDLDFHPRETILISGSRD-------------NTVKLFDFSKTSAKRAF----------KVFQDTEPVRSI 222 (430)
T ss_pred eehhhccCcccceeecchhheEEeccCC-------------CeEEEEecccHHHHHHH----------HHhhccceeeeE
Confidence 344555 677889999998766654433 34567776533222110 001122347899
Q ss_pred eeecCCCceEEEEEeccCCCCccccCcccceeeccCCCCCCC-CceEeEeeceeEE-EEEecCCceEEEeeeecccceeE
Q 004475 248 SWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGE-KPEILHKLDLRFS-VSWCDDSLALVNETWYKTSQTRT 325 (751)
Q Consensus 248 ~~spdG~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~l~~~~~~~~-~~~spdg~~l~~~~~~~~~~~~l 325 (751)
+|+|.|.++++-+. ...+.++|++...-- ...+-.+..+.+. +.+|+.|+..+..+ . . ..|
T Consensus 223 SfHPsGefllvgTd-------------Hp~~rlYdv~T~QcfvsanPd~qht~ai~~V~Ys~t~~lYvTaS-k-D--G~I 285 (430)
T KOG0640|consen 223 SFHPSGEFLLVGTD-------------HPTLRLYDVNTYQCFVSANPDDQHTGAITQVRYSSTGSLYVTAS-K-D--GAI 285 (430)
T ss_pred eecCCCceEEEecC-------------CCceeEEeccceeEeeecCcccccccceeEEEecCCccEEEEec-c-C--CcE
Confidence 99999998444432 235666666411000 0011123345566 89999998544333 2 2 244
Q ss_pred EEecCCCCCCcceeeee----cccccccCCCCCCCeeeCCCCCEEEEeeeecCCcceEEEEccCCCCCCCCCceeEEEec
Q 004475 326 WLVCPGSKDVAPRVLFD----RVFENVYSDPGSPMMTRTSTGTNVIAKIKKENDEQIYILLNGRGFTPEGNIPFLDLFDI 401 (751)
Q Consensus 326 ~~~~~~~~~~~~~~l~~----~~~~~~~~~~~~~~~~~spDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~ 401 (751)
-+.|--+. +-+.. +....+.+ ..|+.+||+|+...++. .+++|.+
T Consensus 286 klwDGVS~----rCv~t~~~AH~gsevcS------a~Ftkn~kyiLsSG~DS---------------------~vkLWEi 334 (430)
T KOG0640|consen 286 KLWDGVSN----RCVRTIGNAHGGSEVCS------AVFTKNGKYILSSGKDS---------------------TVKLWEI 334 (430)
T ss_pred EeeccccH----HHHHHHHhhcCCceeee------EEEccCCeEEeecCCcc---------------------eeeeeee
Confidence 44454332 22211 11122222 55899999887766442 6888999
Q ss_pred CCCceeEEeecc
Q 004475 402 NTGSKERIWESN 413 (751)
Q Consensus 402 ~~g~~~~l~~~~ 413 (751)
.+|.........
T Consensus 335 ~t~R~l~~YtGA 346 (430)
T KOG0640|consen 335 STGRMLKEYTGA 346 (430)
T ss_pred cCCceEEEEecC
Confidence 988876555443
No 299
>COG1770 PtrB Protease II [Amino acid transport and metabolism]
Probab=97.96 E-value=0.0078 Score=64.29 Aligned_cols=267 Identities=15% Similarity=0.102 Sum_probs=142.6
Q ss_pred cccceeecCCCCeEEEEEeecccccccCCceeEEEEEcCCCCeeeccCCCCccccceeeeeEEecCCcEEEEeecCCCCC
Q 004475 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRD 111 (751)
Q Consensus 32 ~~~~p~~SPDG~~iaf~~~~~~~~~~~~~~~~l~i~~~~~g~~~~lt~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~ 111 (751)
.....+.|||++.+||... ..++..-.|.+.++++|+...-.-.. ....++|.+|++.++|+..+....
T Consensus 130 ~Lg~~~~s~D~~~la~s~D-----~~G~e~y~lr~kdL~tg~~~~d~i~~------~~~~~~Wa~d~~~lfYt~~d~~~r 198 (682)
T COG1770 130 SLGAASISPDHNLLAYSVD-----VLGDEQYTLRFKDLATGEELPDEITN------TSGSFAWAADGKTLFYTRLDENHR 198 (682)
T ss_pred eeeeeeeCCCCceEEEEEe-----cccccEEEEEEEecccccccchhhcc------cccceEEecCCCeEEEEEEcCCCC
Confidence 4567899999999999874 22356688999999998754432111 135679999999999997653321
Q ss_pred CCCCCCCCCCCceeeccccccccchhhhhccCCccchhhhhhheeeEEEEEcCCC---CceecCCC---ceEEeeeeCCC
Q 004475 112 PPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSLDG---TAKDFGTP---AVYTAVEPSPD 185 (751)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~G---~~~~lt~~---~~~~~~~~SpD 185 (751)
. ..||.-.+.+ +-+.+-+. .-...+.=|..
T Consensus 199 p--------------------------------------------~kv~~h~~gt~~~~d~lvyeE~d~~f~~~v~~s~s 234 (682)
T COG1770 199 P--------------------------------------------DKVWRHRLGTPGSSDELVYEEKDDRFFLSVGRSRS 234 (682)
T ss_pred c--------------------------------------------ceEEEEecCCCCCcceEEEEcCCCcEEEEeeeccC
Confidence 1 4677766633 33333222 34456777778
Q ss_pred CceEEEEEecCCcccccccCCCceeEEEEeCCCc--eeeeeccCCCCCCCCCccCCccCCCceeeeecCCCceEEEEEec
Q 004475 186 QKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGK--LVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQ 263 (751)
Q Consensus 186 G~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~--~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~spdG~~~i~~~~~~ 263 (751)
.++|++...+.. .+++++.+.+.. ..+.+...+-. -++....-|.+ .++.+..
T Consensus 235 ~~yi~i~~~~~~----------tsE~~ll~a~~p~~~p~vv~pr~~g--------------~eY~~eh~~d~-f~i~sN~ 289 (682)
T COG1770 235 EAYIVISLGSHI----------TSEVRLLDADDPEAEPKVVLPRENG--------------VEYSVEHGGDR-FYILSNA 289 (682)
T ss_pred CceEEEEcCCCc----------ceeEEEEecCCCCCceEEEEEcCCC--------------cEEeeeecCcE-EEEEecC
Confidence 888888754321 467788877643 23333222100 01122223444 3332211
Q ss_pred cCCCCccccCcccceeeccCCCCCCCCceEeEeeceeEE-EEEecCCceEEEeeeecccceeEEEecCCCCCCcceeeee
Q 004475 264 DRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFS-VSWCDDSLALVNETWYKTSQTRTWLVCPGSKDVAPRVLFD 342 (751)
Q Consensus 264 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~-~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~ 342 (751)
++ . .-.|+...+ ..+.+..+.+........ -.++--.++|+..... ..-.+|++.+..++ ++ ..+.-
T Consensus 290 ~g--k------nf~l~~ap~-~~~~~~w~~~I~h~~~~~l~~~~~f~~~lVl~eR~-~glp~v~v~~~~~~-~~-~~i~f 357 (682)
T COG1770 290 DG--K------NFKLVRAPV-SADKSNWRELIPHREDVRLEGVDLFADHLVLLERQ-EGLPRVVVRDRKTG-EE-RGIAF 357 (682)
T ss_pred CC--c------ceEEEEccC-CCChhcCeeeeccCCCceeeeeeeeccEEEEEecc-cCCceEEEEecCCC-ce-eeEEe
Confidence 11 1 125555555 222334444444433333 4555556777665532 34457888887664 22 22321
Q ss_pred cccc-cccCCCCCCCeeeCCCCCEEEEeeeecCCcceEEEEccCCCCCCCCCceeEEEecCCCceeEEeec
Q 004475 343 RVFE-NVYSDPGSPMMTRTSTGTNVIAKIKKENDEQIYILLNGRGFTPEGNIPFLDLFDINTGSKERIWES 412 (751)
Q Consensus 343 ~~~~-~~~~~~~~~~~~~spDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~ 412 (751)
.... ..+. .++ --+|-..|.+.... -.+...++-+|+.+++.+.|-..
T Consensus 358 ~~~ay~~~l-~~~----~e~~s~~lR~~ysS-----------------~ttP~~~~~~dm~t~er~~Lkqq 406 (682)
T COG1770 358 DDEAYSAGL-SGN----PEFDSDRLRYSYSS-----------------MTTPATLFDYDMATGERTLLKQQ 406 (682)
T ss_pred cchhhhccc-cCC----CCCCCccEEEEeec-----------------ccccceeEEeeccCCcEEEEEec
Confidence 1111 1110 011 11233344443311 12455899999999988777554
No 300
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=97.95 E-value=0.0013 Score=69.92 Aligned_cols=202 Identities=13% Similarity=0.044 Sum_probs=113.0
Q ss_pred cccceeecCCCCeEEEEEeecccccccCCceeEEEEEcCCCC-eeeccCCCCccccceeeeeEEecCCcEEEEeecCCCC
Q 004475 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGE-AKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRR 110 (751)
Q Consensus 32 ~~~~p~~SPDG~~iaf~~~~~~~~~~~~~~~~l~i~~~~~g~-~~~lt~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~ 110 (751)
.++...+|.|...++- ..+..|-+++.++.+ .|.++.+- +-...|-|.++.|+.....
T Consensus 375 dVRsl~vS~d~~~~~S-----------ga~~SikiWn~~t~kciRTi~~~y-------~l~~~Fvpgd~~Iv~G~k~--- 433 (888)
T KOG0306|consen 375 DVRSLCVSSDSILLAS-----------GAGESIKIWNRDTLKCIRTITCGY-------ILASKFVPGDRYIVLGTKN--- 433 (888)
T ss_pred heeEEEeecCceeeee-----------cCCCcEEEEEccCcceeEEecccc-------EEEEEecCCCceEEEeccC---
Confidence 5788889988766655 445777788887765 56664431 3455788999988877432
Q ss_pred CCCCCCCCCCCCceeeccccccccchhhhhccCCccchhhhhhheeeEEEEEcC-CC-CceecCCC-ceEEeeeeCCCCc
Q 004475 111 DPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DG-TAKDFGTP-AVYTAVEPSPDQK 187 (751)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~G-~~~~lt~~-~~~~~~~~SpDG~ 187 (751)
+.|-++|+ ++ -...+..+ +.++.++.+||++
T Consensus 434 ----------------------------------------------Gel~vfdlaS~~l~Eti~AHdgaIWsi~~~pD~~ 467 (888)
T KOG0306|consen 434 ----------------------------------------------GELQVFDLASASLVETIRAHDGAIWSISLSPDNK 467 (888)
T ss_pred ----------------------------------------------CceEEEEeehhhhhhhhhccccceeeeeecCCCC
Confidence 46666777 45 23333334 7889999999999
Q ss_pred eEEEEEecCCcccccccCCCceeEEEEeCCCceeeeeccCCCCCCCCCccCCccCCCceeeeecCCCceEEEEEeccCCC
Q 004475 188 YVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGD 267 (751)
Q Consensus 188 ~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~spdG~~~i~~~~~~~~~~ 267 (751)
.++..+.+.... .. .. -++.+..+.+.+.|.-..-.. -.-...+.++++||||++ ++..- .
T Consensus 468 g~vT~saDktVk----fW--df-~l~~~~~gt~~k~lsl~~~rt------Lel~ddvL~v~~Spdgk~-LaVsL-L---- 528 (888)
T KOG0306|consen 468 GFVTGSADKTVK----FW--DF-KLVVSVPGTQKKVLSLKHTRT------LELEDDVLCVSVSPDGKL-LAVSL-L---- 528 (888)
T ss_pred ceEEecCCcEEE----EE--eE-EEEeccCcccceeeeeccceE------EeccccEEEEEEcCCCcE-EEEEe-c----
Confidence 998876554210 00 00 011221122222221111000 001134568999999998 44422 1
Q ss_pred CccccCcccceeeccCCCCCCCCceEeEeeceeEE-EEEecCCceEEEeeeecccceeEEEecC
Q 004475 268 ANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFS-VSWCDDSLALVNETWYKTSQTRTWLVCP 330 (751)
Q Consensus 268 ~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~-~~~spdg~~l~~~~~~~~~~~~l~~~~~ 330 (751)
+..-.+|-+|.= .-.-.|..+.-.+. ...|||++.|+..+.. .+-.+|=.|.
T Consensus 529 -----dnTVkVyflDtl----KFflsLYGHkLPV~smDIS~DSklivTgSAD--KnVKiWGLdF 581 (888)
T KOG0306|consen 529 -----DNTVKVYFLDTL----KFFLSLYGHKLPVLSMDISPDSKLIVTGSAD--KNVKIWGLDF 581 (888)
T ss_pred -----cCeEEEEEecce----eeeeeecccccceeEEeccCCcCeEEeccCC--CceEEecccc
Confidence 122245554421 11122333444445 7889999999877632 2345665554
No 301
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=97.95 E-value=0.0036 Score=64.11 Aligned_cols=63 Identities=8% Similarity=0.088 Sum_probs=37.6
Q ss_pred ceeEE-EEEecCCceEEEeeeecccceeEEEecCCCCCCcceeeeecccccccCCCCCCCeeeCCCCCEEEEeeee
Q 004475 298 DLRFS-VSWCDDSLALVNETWYKTSQTRTWLVCPGSKDVAPRVLFDRVFENVYSDPGSPMMTRTSTGTNVIAKIKK 372 (751)
Q Consensus 298 ~~~~~-~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~spDG~~l~~~~~~ 372 (751)
.+.+. +.|||||++|+..+. .+..+| .+.++. +..-+...-+....- ++||||||+|+....+
T Consensus 290 ~g~in~f~FS~DG~~LA~VSq--DGfLRv--F~fdt~--eLlg~mkSYFGGLLC------vcWSPDGKyIvtGGED 353 (636)
T KOG2394|consen 290 EGSINEFAFSPDGKYLATVSQ--DGFLRI--FDFDTQ--ELLGVMKSYFGGLLC------VCWSPDGKYIVTGGED 353 (636)
T ss_pred cccccceeEcCCCceEEEEec--CceEEE--eeccHH--HHHHHHHhhccceEE------EEEcCCccEEEecCCc
Confidence 44556 899999999998873 233344 455442 222222211111111 7899999999987743
No 302
>COG3243 PhaC Poly(3-hydroxyalkanoate) synthetase [Lipid metabolism]
Probab=97.95 E-value=8.3e-05 Score=74.64 Aligned_cols=88 Identities=13% Similarity=0.045 Sum_probs=62.4
Q ss_pred hHHHHHHhCCeEEEEcCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCC
Q 004475 545 TSSLIFLARRFAVLAGPSIPIIGEGDKLPNDRFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPH 624 (751)
Q Consensus 545 ~~~~~~~~~G~~v~~~~~~~~~g~g~~~~~~~~~~~~~~d~~~~v~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~p~ 624 (751)
.+...++++|..|+.++.+ .+.. ......+.+-+.+.+..+++.+++... .++|-++|+|.||.+++.++++.+.
T Consensus 130 s~V~~l~~~g~~vfvIsw~-nPd~--~~~~~~~edYi~e~l~~aid~v~~itg--~~~InliGyCvGGtl~~~ala~~~~ 204 (445)
T COG3243 130 SLVRWLLEQGLDVFVISWR-NPDA--SLAAKNLEDYILEGLSEAIDTVKDITG--QKDINLIGYCVGGTLLAAALALMAA 204 (445)
T ss_pred cHHHHHHHcCCceEEEecc-CchH--hhhhccHHHHHHHHHHHHHHHHHHHhC--ccccceeeEecchHHHHHHHHhhhh
Confidence 3466788999999884442 2222 112223333344788888888887643 3679999999999999999999887
Q ss_pred c-eeEEEEccCCCC
Q 004475 625 L-FCCGIARSGSYN 637 (751)
Q Consensus 625 ~-~~~~v~~~~~~d 637 (751)
+ ++.++.+....|
T Consensus 205 k~I~S~T~lts~~D 218 (445)
T COG3243 205 KRIKSLTLLTSPVD 218 (445)
T ss_pred cccccceeeecchh
Confidence 7 888888887665
No 303
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=97.95 E-value=0.0011 Score=70.61 Aligned_cols=249 Identities=13% Similarity=0.078 Sum_probs=143.6
Q ss_pred eeEEeecCCCCCCCCc-ccccCCCCcccccceeecCCCCeEEEEEeecccccccCCceeEEEEEcCCCCeeeccCCCCcc
Q 004475 6 GIGIHRLLPDDSLGPE-KEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDIC 84 (751)
Q Consensus 6 ~~~~~~~~~~~~~g~~-~~l~~~~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~~~~~l~i~~~~~g~~~~lt~~~~~~ 84 (751)
.|.+|+.++ ++. |.++ .+ .+....|=|-+++|+.- ...+.|-++++.+......+.-..
T Consensus 395 SikiWn~~t----~kciRTi~---~~-y~l~~~Fvpgd~~Iv~G----------~k~Gel~vfdlaS~~l~Eti~AHd-- 454 (888)
T KOG0306|consen 395 SIKIWNRDT----LKCIRTIT---CG-YILASKFVPGDRYIVLG----------TKNGELQVFDLASASLVETIRAHD-- 454 (888)
T ss_pred cEEEEEccC----cceeEEec---cc-cEEEEEecCCCceEEEe----------ccCCceEEEEeehhhhhhhhhccc--
Confidence 577888876 443 3343 44 35666788888888763 234566677777765333322111
Q ss_pred ccceeeeeEEecCCcEEEEeecCCCCCCCCCCCCCCCCceeeccccccccchhhhhccCCccchhhhhhheeeEEEEEcC
Q 004475 85 LNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL 164 (751)
Q Consensus 85 ~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 164 (751)
+.+-.++-+||++..+..+.+....+ | ...+..+.
T Consensus 455 --gaIWsi~~~pD~~g~vT~saDktVkf--------------------------------------W-----df~l~~~~ 489 (888)
T KOG0306|consen 455 --GAIWSISLSPDNKGFVTGSADKTVKF--------------------------------------W-----DFKLVVSV 489 (888)
T ss_pred --cceeeeeecCCCCceEEecCCcEEEE--------------------------------------E-----eEEEEecc
Confidence 12456677899998887754321110 0 01111122
Q ss_pred CCCc---------eecCCCceEEeeeeCCCCceEEEEEecCCcccccccCCCceeEEEEeCCCcee-eeeccCCCCCCCC
Q 004475 165 DGTA---------KDFGTPAVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLV-RELCDLPPAEDIP 234 (751)
Q Consensus 165 ~G~~---------~~lt~~~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~-~~l~~~~~~~~~~ 234 (751)
.|.. +.|.-...+..+++||||++|++.-.++ .+-+|-+++-+. ..|+.+.+.
T Consensus 490 ~gt~~k~lsl~~~rtLel~ddvL~v~~Spdgk~LaVsLLdn-------------TVkVyflDtlKFflsLYGHkLP---- 552 (888)
T KOG0306|consen 490 PGTQKKVLSLKHTRTLELEDDVLCVSVSPDGKLLAVSLLDN-------------TVKVYFLDTLKFFLSLYGHKLP---- 552 (888)
T ss_pred CcccceeeeeccceEEeccccEEEEEEcCCCcEEEEEeccC-------------eEEEEEecceeeeeeecccccc----
Confidence 2311 1121126778999999999999976554 334444444322 233333322
Q ss_pred CccCCccCCCceeeeecCCCceEEEEEeccCCCCccccCcccceeeccCCCCCCCCceEeEeeceeEE-EEEecCCceEE
Q 004475 235 VCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFS-VSWCDDSLALV 313 (751)
Q Consensus 235 ~~~~~~~~~~~~~~~spdG~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~-~~~spdg~~l~ 313 (751)
+.++..|||++. |+-.++ ...+-+|.++ + |...+-+..++..+. +.|-|+.. +.
T Consensus 553 ---------V~smDIS~DSkl-ivTgSA------------DKnVKiWGLd-F-GDCHKS~fAHdDSvm~V~F~P~~~-~F 607 (888)
T KOG0306|consen 553 ---------VLSMDISPDSKL-IVTGSA------------DKNVKIWGLD-F-GDCHKSFFAHDDSVMSVQFLPKTH-LF 607 (888)
T ss_pred ---------eeEEeccCCcCe-EEeccC------------CCceEEeccc-c-chhhhhhhcccCceeEEEEcccce-eE
Confidence 558899999996 555431 1244444442 2 345666777777777 89999444 55
Q ss_pred EeeeecccceeEEEecCCCCCCcceeeeecccccccCCCCCCCeeeCCCCCEEEEeeee
Q 004475 314 NETWYKTSQTRTWLVCPGSKDVAPRVLFDRVFENVYSDPGSPMMTRTSTGTNVIAKIKK 372 (751)
Q Consensus 314 ~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~spDG~~l~~~~~~ 372 (751)
|++.. ...+-..|.+. .+..+..+.....+|- ++.+|+|.+++..+++
T Consensus 608 Ft~gK---D~kvKqWDg~k--Fe~iq~L~~H~~ev~c------Lav~~~G~~vvs~shD 655 (888)
T KOG0306|consen 608 FTCGK---DGKVKQWDGEK--FEEIQKLDGHHSEVWC------LAVSPNGSFVVSSSHD 655 (888)
T ss_pred EEecC---cceEEeechhh--hhhheeeccchheeee------eEEcCCCCeEEeccCC
Confidence 66633 34566666655 4444545555555665 8899999998888754
No 304
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=97.95 E-value=0.003 Score=64.59 Aligned_cols=39 Identities=8% Similarity=0.079 Sum_probs=27.7
Q ss_pred eEEEEEcCCCCcee-cC-CCceEEeeeeCCCCceEEEEEec
Q 004475 157 AQLVLGSLDGTAKD-FG-TPAVYTAVEPSPDQKYVLITSMH 195 (751)
Q Consensus 157 ~~l~~~~~~G~~~~-lt-~~~~~~~~~~SpDG~~i~~~~~~ 195 (751)
+.|.++.-+|-.+. +. ....+..++|.|+...|+|....
T Consensus 126 G~iKiWSrsGMLRStl~Q~~~~v~c~~W~p~S~~vl~c~g~ 166 (737)
T KOG1524|consen 126 GVIKIWSRSGMLRSTVVQNEESIRCARWAPNSNSIVFCQGG 166 (737)
T ss_pred ceEEEEeccchHHHHHhhcCceeEEEEECCCCCceEEecCC
Confidence 46777777884332 22 23678899999999999997543
No 305
>COG3545 Predicted esterase of the alpha/beta hydrolase fold [General function prediction only]
Probab=97.94 E-value=0.00098 Score=58.67 Aligned_cols=118 Identities=16% Similarity=0.120 Sum_probs=79.8
Q ss_pred CcEEEEEeChHHHHHHHHHHhCCCceeEEEEccCCCCCCCCccCcccccccchhhHHHHHhcCcccccCCCCCCEEEEEc
Q 004475 601 SRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGSYNKTLTPFGFQTEFRTLWEATNVYIEMSPITHANKIKKPILIIHG 680 (751)
Q Consensus 601 ~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~li~~G 680 (751)
+.++|++||.|+..++.++.+....++++++.+|..-..... .........+.. ..++.-|.+++++
T Consensus 59 ~~~vlVAHSLGc~~v~h~~~~~~~~V~GalLVAppd~~~~~~------------~~~~~~tf~~~p-~~~lpfps~vvaS 125 (181)
T COG3545 59 GPVVLVAHSLGCATVAHWAEHIQRQVAGALLVAPPDVSRPEI------------RPKHLMTFDPIP-REPLPFPSVVVAS 125 (181)
T ss_pred CCeEEEEecccHHHHHHHHHhhhhccceEEEecCCCcccccc------------chhhccccCCCc-cccCCCceeEEEe
Confidence 459999999999999999988766899999999863211100 011111122222 2234568999999
Q ss_pred CCCCCCCCChHHHHHHHHHHHhCCCcEEEEEeCCCCCcCC--ccccHHHHHHHHHHHHHH
Q 004475 681 EVDDKVGLFPMQAERFFDALKGHGALSRLVLLPFEHHVYA--ARENVMHVIWETDRWLQK 738 (751)
Q Consensus 681 ~~D~~vp~~~~~~~~~~~~l~~~~~~~~~~~~~~~~H~~~--~~~~~~~~~~~~~~fl~~ 738 (751)
.+|+.++ +++++.+.+++.+. ++....+||... ....+.+....+.+|+.+
T Consensus 126 rnDp~~~--~~~a~~~a~~wgs~-----lv~~g~~GHiN~~sG~g~wpeg~~~l~~~~s~ 178 (181)
T COG3545 126 RNDPYVS--YEHAEDLANAWGSA-----LVDVGEGGHINAESGFGPWPEGYALLAQLLSR 178 (181)
T ss_pred cCCCCCC--HHHHHHHHHhccHh-----heecccccccchhhcCCCcHHHHHHHHHHhhh
Confidence 9999999 99999999888654 778888888642 223444555555555543
No 306
>PF10142 PhoPQ_related: PhoPQ-activated pathogenicity-related protein; InterPro: IPR009199 Proteins in this entry are believed to play a role in virulence/pathogenicity in Salmonella. Salmonella typhi PqaA has been shown to be activated by PhoP/Q two-component regulatory system, which regulates many virulence genes []. It has been also shown to confer resistance to antimicrobial peptides (melittin) []. Members of this family are predicted to belong to the alpha/beta hydrolase domain superfamily.
Probab=97.94 E-value=0.0011 Score=67.51 Aligned_cols=152 Identities=16% Similarity=0.145 Sum_probs=104.6
Q ss_pred HHHHHHHHHHH----HcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEccC-CCCCCC------CccC-ccccc-
Q 004475 583 SSAEAAVEEVV----RRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSG-SYNKTL------TPFG-FQTEF- 649 (751)
Q Consensus 583 ~d~~~~v~~l~----~~~~id~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~-~~d~~~------~~~~-~~~~~- 649 (751)
.-+.++++.+. +...++.++.+|.|.|-=|..++..|+.. +|++|++.+.- +.+... ..++ .....
T Consensus 150 ka~vrAMD~vq~~~~~~~~~~i~~FvV~GaSKRGWTtWltaa~D-~RV~aivP~Vid~LN~~~~l~h~y~~yG~~ws~a~ 228 (367)
T PF10142_consen 150 KAAVRAMDAVQEFLKKKFGVNIEKFVVTGASKRGWTTWLTAAVD-PRVKAIVPIVIDVLNMKANLEHQYRSYGGNWSFAF 228 (367)
T ss_pred HHHHHHHHHHHHHHHhhcCCCccEEEEeCCchHhHHHHHhhccC-cceeEEeeEEEccCCcHHHHHHHHHHhCCCCccch
Confidence 34444444443 33456788999999999999999999955 78888876552 222110 0011 00000
Q ss_pred ccc-------h----hhHHHHHhcCcccccCCCCCCEEEEEcCCCCCCCCChHHHHHHHHHHHhCCCcEEEEEeCCCCCc
Q 004475 650 RTL-------W----EATNVYIEMSPITHANKIKKPILIIHGEVDDKVGLFPMQAERFFDALKGHGALSRLVLLPFEHHV 718 (751)
Q Consensus 650 ~~~-------~----~~~~~~~~~~~~~~~~~~~~P~li~~G~~D~~vp~~~~~~~~~~~~l~~~~~~~~~~~~~~~~H~ 718 (751)
... + ...+...-.+|+.+.++++.|-||+.|..|.... ++...-++..|+. +..++++|+++|.
T Consensus 229 ~dY~~~gi~~~l~tp~f~~L~~ivDP~~Y~~rL~~PK~ii~atgDeFf~--pD~~~~y~d~L~G---~K~lr~vPN~~H~ 303 (367)
T PF10142_consen 229 QDYYNEGITQQLDTPEFDKLMQIVDPYSYRDRLTMPKYIINATGDEFFV--PDSSNFYYDKLPG---EKYLRYVPNAGHS 303 (367)
T ss_pred hhhhHhCchhhcCCHHHHHHHHhcCHHHHHHhcCccEEEEecCCCceec--cCchHHHHhhCCC---CeeEEeCCCCCcc
Confidence 000 0 1112334567888889999999999999999998 8999999998874 4589999999998
Q ss_pred CCccccHHHHHHHHHHHHHHHhcCCC
Q 004475 719 YAARENVMHVIWETDRWLQKYCLSNT 744 (751)
Q Consensus 719 ~~~~~~~~~~~~~~~~fl~~~l~~~~ 744 (751)
... .+....+..|+...+.+.+
T Consensus 304 ~~~----~~~~~~l~~f~~~~~~~~~ 325 (367)
T PF10142_consen 304 LIG----SDVVQSLRAFYNRIQNGRP 325 (367)
T ss_pred cch----HHHHHHHHHHHHHHHcCCC
Confidence 754 5777889999988766443
No 307
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=97.93 E-value=0.00019 Score=69.50 Aligned_cols=225 Identities=16% Similarity=0.125 Sum_probs=131.2
Q ss_pred cceeEEeecCCCCCCCCcc-cccCCCCcccccceeecCCCCeEEEEEeecccccccCCceeEEEEEcCCC-C-eeeccCC
Q 004475 4 FTGIGIHRLLPDDSLGPEK-EVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETG-E-AKPLFES 80 (751)
Q Consensus 4 ~~~~~~~~~~~~~~~g~~~-~l~~~~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~~~~~l~i~~~~~g-~-~~~lt~~ 80 (751)
...|+++|..+ |+.. .|.+..+ .+...+++.-|++||-.+. +.. +.+++.++- + .+.+ .+
T Consensus 129 d~tikv~D~~t----g~~e~~LrGHt~--sv~di~~~a~Gk~l~tcSs--------Dl~--~~LWd~~~~~~c~ks~-~g 191 (406)
T KOG0295|consen 129 DATIKVFDTET----GELERSLRGHTD--SVFDISFDASGKYLATCSS--------DLS--AKLWDFDTFFRCIKSL-IG 191 (406)
T ss_pred CceEEEEEccc----hhhhhhhhcccc--ceeEEEEecCccEEEecCC--------ccc--hhheeHHHHHHHHHHh-cC
Confidence 35799999998 8763 2433333 4889999999999999753 222 444454442 1 2222 22
Q ss_pred CCccccceeeeeEEecCCcEEEEeecCCCCCCCCCCCCCCCCceeeccccccccchhhhhccCCccchhhhhhheeeEEE
Q 004475 81 PDICLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLV 160 (751)
Q Consensus 81 ~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 160 (751)
..+ .++.+.+-|-|.+|+-.+.+ ..|.
T Consensus 192 h~h----~vS~V~f~P~gd~ilS~srD-------------------------------------------------~tik 218 (406)
T KOG0295|consen 192 HEH----GVSSVFFLPLGDHILSCSRD-------------------------------------------------NTIK 218 (406)
T ss_pred ccc----ceeeEEEEecCCeeeecccc-------------------------------------------------ccee
Confidence 222 47888999999888866432 3566
Q ss_pred EEcC-CC-CceecCCC-ceEEeeeeCCCCceEEEEEecCCcccccccCCCceeEEEEeCCCceeeee-ccCCCCCCCCCc
Q 004475 161 LGSL-DG-TAKDFGTP-AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVREL-CDLPPAEDIPVC 236 (751)
Q Consensus 161 ~~~~-~G-~~~~lt~~-~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l-~~~~~~~~~~~~ 236 (751)
.++. +| ....++.+ ..+..++.+.||..++--+. .+.|.+|-..+++.+.+ ..++..
T Consensus 219 ~We~~tg~cv~t~~~h~ewvr~v~v~~DGti~As~s~-------------dqtl~vW~~~t~~~k~~lR~hEh~------ 279 (406)
T KOG0295|consen 219 AWECDTGYCVKTFPGHSEWVRMVRVNQDGTIIASCSN-------------DQTLRVWVVATKQCKAELREHEHP------ 279 (406)
T ss_pred EEecccceeEEeccCchHhEEEEEecCCeeEEEecCC-------------CceEEEEEeccchhhhhhhccccc------
Confidence 6777 67 67777777 88999999999987765433 34677888877643322 122211
Q ss_pred cCCccCCCceeeeecCCCceEEEEEecc--CCCC-ccccCcccceeeccCCCCCCCCceEeEeeceeEE-EEEecCCceE
Q 004475 237 YNSVREGMRSISWRADKPSTLYWVEAQD--RGDA-NVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFS-VSWCDDSLAL 312 (751)
Q Consensus 237 ~~~~~~~~~~~~~spdG~~~i~~~~~~~--~~~~-~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~-~~~spdg~~l 312 (751)
+-.++|.|+..+ =-...+.+ .+.. .........|.++++. ++...-+|...+.-+. .+|+|-|++|
T Consensus 280 -------vEci~wap~~~~-~~i~~at~~~~~~~~l~s~SrDktIk~wdv~--tg~cL~tL~ghdnwVr~~af~p~Gkyi 349 (406)
T KOG0295|consen 280 -------VECIAWAPESSY-PSISEATGSTNGGQVLGSGSRDKTIKIWDVS--TGMCLFTLVGHDNWVRGVAFSPGGKYI 349 (406)
T ss_pred -------eEEEEecccccC-cchhhccCCCCCccEEEeecccceEEEEecc--CCeEEEEEecccceeeeeEEcCCCeEE
Confidence 124555555332 00000000 0000 0111223467777774 2334444555555566 9999999999
Q ss_pred EEeeeecccceeEEEec
Q 004475 313 VNETWYKTSQTRTWLVC 329 (751)
Q Consensus 313 ~~~~~~~~~~~~l~~~~ 329 (751)
+-.++. ...++|-+.
T Consensus 350 ~ScaDD--ktlrvwdl~ 364 (406)
T KOG0295|consen 350 LSCADD--KTLRVWDLK 364 (406)
T ss_pred EEEecC--CcEEEEEec
Confidence 877732 334555443
No 308
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=97.91 E-value=0.0067 Score=64.32 Aligned_cols=62 Identities=10% Similarity=0.041 Sum_probs=39.3
Q ss_pred ccccceeecCCCCeEEEEEeecccccccCCceeEEEEEcCCCCeeeccCCCCccccceeeeeEEecCCcEEEEe
Q 004475 31 AKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFT 104 (751)
Q Consensus 31 ~~~~~p~~SPDG~~iaf~~~~~~~~~~~~~~~~l~i~~~~~g~~~~lt~~~~~~~~~~~~~~~wspDg~~l~~~ 104 (751)
..++..+|||||+++|.-. ..-.+.+.+++++.-. ++.....+.. .+..++|||.+++|+-.
T Consensus 79 k~~t~vAfS~~GryvatGE--------cG~~pa~kVw~la~h~--vVAEfvdHKY--~vtcvaFsp~~kyvvSV 140 (1080)
T KOG1408|consen 79 KPLTCVAFSQNGRYVATGE--------CGRTPASKVWSLAFHG--VVAEFVDHKY--NVTCVAFSPGNKYVVSV 140 (1080)
T ss_pred cceeEEEEcCCCcEEEecc--------cCCCccceeeeecccc--chhhhhhccc--cceeeeecCCCcEEEee
Confidence 3688999999999999831 1233455566665432 2222222221 36788999999999844
No 309
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=97.90 E-value=0.00019 Score=70.65 Aligned_cols=244 Identities=12% Similarity=0.111 Sum_probs=129.7
Q ss_pred cceeEEeecCCCCCCCCcccccCCCCc-ccccceeecCCCCeEEEEEeecccccccCCceeEEEEEcCCCCe-eeccCCC
Q 004475 4 FTGIGIHRLLPDDSLGPEKEVHGYPDG-AKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEA-KPLFESP 81 (751)
Q Consensus 4 ~~~~~~~~~~~~~~~g~~~~l~~~~~~-~~~~~p~~SPDG~~iaf~~~~~~~~~~~~~~~~l~i~~~~~g~~-~~lt~~~ 81 (751)
...|.+|++.+ ++...+..|.+. ..+....+-+|++.+.-. .+..++.+++++..+. .+|+-+.
T Consensus 196 Dr~Ik~W~v~~----~k~~~~~tLaGs~g~it~~d~d~~~~~~iAa----------s~d~~~r~Wnvd~~r~~~TLsGHt 261 (459)
T KOG0288|consen 196 DRIIKLWNVLG----EKSELISTLAGSLGNITSIDFDSDNKHVIAA----------SNDKNLRLWNVDSLRLRHTLSGHT 261 (459)
T ss_pred hhhhhhhhccc----chhhhhhhhhccCCCcceeeecCCCceEEee----------cCCCceeeeeccchhhhhhhcccc
Confidence 34688999988 776566555442 368899999999987664 3445666666666654 3443322
Q ss_pred CccccceeeeeEEecCCcEEEEeecCCCCCCCCCCCCCCCCceeeccccccccchhhhhccCCccchhhhhhheeeEEEE
Q 004475 82 DICLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVL 161 (751)
Q Consensus 82 ~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 161 (751)
. . +..+.+.-....++-.+.+ ..|..
T Consensus 262 d-k----Vt~ak~~~~~~~vVsgs~D-------------------------------------------------RtiK~ 287 (459)
T KOG0288|consen 262 D-K----VTAAKFKLSHSRVVSGSAD-------------------------------------------------RTIKL 287 (459)
T ss_pred c-c----eeeehhhccccceeecccc-------------------------------------------------chhhh
Confidence 1 1 3344444333333322111 34555
Q ss_pred EcC-CC-CceecCCCceEEeeeeCCCCceEEEEEecCCcccccccCCCceeEEEEeCCCceeeeeccCCCCCCCCCccCC
Q 004475 162 GSL-DG-TAKDFGTPAVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNS 239 (751)
Q Consensus 162 ~~~-~G-~~~~lt~~~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~ 239 (751)
+|+ .+ ..+.+.......++..+ ...+++ .. |...|..||..+....+-.+..+
T Consensus 288 WDl~k~~C~kt~l~~S~cnDI~~~---~~~~~S-gH-----------~DkkvRfwD~Rs~~~~~sv~~gg---------- 342 (459)
T KOG0288|consen 288 WDLQKAYCSKTVLPGSQCNDIVCS---ISDVIS-GH-----------FDKKVRFWDIRSADKTRSVPLGG---------- 342 (459)
T ss_pred hhhhhhheeccccccccccceEec---ceeeee-cc-----------cccceEEEeccCCceeeEeecCc----------
Confidence 566 33 22222211222233333 222222 21 24458889977665443322222
Q ss_pred ccCCCceeeeecCCCceEEEEEeccCCCCccccCcccceeeccCCCCCCCCc-eEeEeec----eeEE-EEEecCCceEE
Q 004475 240 VREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKP-EILHKLD----LRFS-VSWCDDSLALV 313 (751)
Q Consensus 240 ~~~~~~~~~~spdG~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~-~~l~~~~----~~~~-~~~spdg~~l~ 313 (751)
-+..+..++||..++.+ + . .+.|-++|+- +... ....... -... +.||||+.+++
T Consensus 343 ---~vtSl~ls~~g~~lLss-s-R-----------Ddtl~viDlR---t~eI~~~~sA~g~k~asDwtrvvfSpd~~Yva 403 (459)
T KOG0288|consen 343 ---RVTSLDLSMDGLELLSS-S-R-----------DDTLKVIDLR---TKEIRQTFSAEGFKCASDWTRVVFSPDGSYVA 403 (459)
T ss_pred ---ceeeEeeccCCeEEeee-c-C-----------CCceeeeecc---cccEEEEeeccccccccccceeEECCCCceee
Confidence 14478999999984444 2 1 2355556553 2222 2222211 1234 88999999988
Q ss_pred EeeeecccceeEEEecCCCCCCcceeeeecccc-cccCCCCCCCeeeCCCCCEEEEee
Q 004475 314 NETWYKTSQTRTWLVCPGSKDVAPRVLFDRVFE-NVYSDPGSPMMTRTSTGTNVIAKI 370 (751)
Q Consensus 314 ~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~~spDG~~l~~~~ 370 (751)
.++. ...||+.+..++.-+ ..+-....+ .... .+|+|-|+.|+..+
T Consensus 404 AGS~----dgsv~iW~v~tgKlE-~~l~~s~s~~aI~s------~~W~~sG~~Llsad 450 (459)
T KOG0288|consen 404 AGSA----DGSVYIWSVFTGKLE-KVLSLSTSNAAITS------LSWNPSGSGLLSAD 450 (459)
T ss_pred eccC----CCcEEEEEccCceEE-EEeccCCCCcceEE------EEEcCCCchhhccc
Confidence 7652 346788888775222 222211111 1222 78999999988776
No 310
>TIGR02171 Fb_sc_TIGR02171 Fibrobacter succinogenes paralogous family TIGR02171. This model describes a paralogous family of the rumen bacterium Fibrobacter succinogenes. Eleven members are found in Fibrobacter succinogenes S85, averaging over 900 amino acids in length. More than half are predicted lipoproteins. The function is unknown.
Probab=97.90 E-value=0.0011 Score=73.47 Aligned_cols=93 Identities=12% Similarity=0.058 Sum_probs=63.2
Q ss_pred eEEEEEeecccccccCCceeEEEEEcCCCCeeec-cCCCCccccceeeeeEEecCCcEEEE-eecCCCCCCCCCCCCCCC
Q 004475 44 RIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPL-FESPDICLNAVFGSFVWVNNSTLLIF-TIPSSRRDPPKKTMVPLG 121 (751)
Q Consensus 44 ~iaf~~~~~~~~~~~~~~~~l~i~~~~~g~~~~l-t~~~~~~~~~~~~~~~wspDg~~l~~-~~~~~~~~~~~~~~~~~~ 121 (751)
+|||+.. ...+|.++|.++..++.+ +.... .+..|.|||||+.|+| ++.....
T Consensus 320 kiAfv~~---------~~~~L~~~D~dG~n~~~ve~~~~~-----~i~sP~~SPDG~~vAY~ts~e~~~----------- 374 (912)
T TIGR02171 320 KLAFRND---------VTGNLAYIDYTKGASRAVEIEDTI-----SVYHPDISPDGKKVAFCTGIEGLP----------- 374 (912)
T ss_pred eEEEEEc---------CCCeEEEEecCCCCceEEEecCCC-----ceecCcCCCCCCEEEEEEeecCCC-----------
Confidence 8999862 224999999999999888 65554 2567799999999999 5433210
Q ss_pred CceeeccccccccchhhhhccCCccchhhhhhheeeEEEEEcC--CC-CceecCCC-ceEEeeeeCCCCce-EEEEEe
Q 004475 122 PKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL--DG-TAKDFGTP-AVYTAVEPSPDQKY-VLITSM 194 (751)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~--~G-~~~~lt~~-~~~~~~~~SpDG~~-i~~~~~ 194 (751)
+...||+.++ +| ...+|.-. ..+..-...+.|.. |+|.+.
T Consensus 375 ---------------------------------g~s~vYv~~L~t~~~~~vkl~ve~aaiprwrv~e~gdt~ivyv~~ 419 (912)
T TIGR02171 375 ---------------------------------GKSSVYVRNLNASGSGLVKLPVENAAIPRWRVLENGDTVIVYVSD 419 (912)
T ss_pred ---------------------------------CCceEEEEehhccCCCceEeecccccccceEecCCCCeEEEEEcC
Confidence 1257999999 44 55555433 55666677788865 444443
No 311
>PF12048 DUF3530: Protein of unknown function (DUF3530); InterPro: IPR022529 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 272 to 336 amino acids in length. These proteins are distantly related to alpa/beta hydrolases so they may act as enzymes.
Probab=97.90 E-value=0.002 Score=65.12 Aligned_cols=206 Identities=17% Similarity=0.145 Sum_probs=121.0
Q ss_pred CceEEEEEEcCCCCCCCCCCCccEEEEEcCCCCcCcccCCcccCCCCccCCCCchHHHHHHhCCeEEEEcCCCC--CC--
Q 004475 491 GVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGPSIP--II-- 566 (751)
Q Consensus 491 ~~~i~~~~~~P~~~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~v~~~~~~~--~~-- 566 (751)
|..-.-.+|.|... +.++-+||++||-|.. -.+.+....+...|.+.||.+++..-.+ ..
T Consensus 70 ~~~~flaL~~~~~~----~~~~G~vIilp~~g~~------------~d~p~~i~~LR~~L~~~GW~Tlsit~P~~~~~~~ 133 (310)
T PF12048_consen 70 GEERFLALWRPANS----AKPQGAVIILPDWGEH------------PDWPGLIAPLRRELPDHGWATLSITLPDPAPPAS 133 (310)
T ss_pred CCEEEEEEEecccC----CCCceEEEEecCCCCC------------CCcHhHHHHHHHHhhhcCceEEEecCCCcccccC
Confidence 34455667777652 3346799999995421 1122222345668889999999822211 00
Q ss_pred -----------CCC--CCCC---------------CchhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHH
Q 004475 567 -----------GEG--DKLP---------------NDRFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHL 618 (751)
Q Consensus 567 -----------g~g--~~~~---------------~~~~~~~~~~d~~~~v~~l~~~~~id~~~i~l~G~S~GG~~a~~~ 618 (751)
.-+ .... ...+...+..-+.+++.++.+++. .+|+|+||+.|+++++.+
T Consensus 134 p~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ari~Aa~~~~~~~~~---~~ivlIg~G~gA~~~~~~ 210 (310)
T PF12048_consen 134 PNRATEAEEVPSAGDQQLSQPSDEPSPASAQEAEAREAYEERLFARIEAAIAFAQQQGG---KNIVLIGHGTGAGWAARY 210 (310)
T ss_pred CccCCCCCCCCCCCCCCcCCCCCCCccccccHhHHhHHHHHHHHHHHHHHHHHHHhcCC---ceEEEEEeChhHHHHHHH
Confidence 000 0000 012334566777788888888763 459999999999999999
Q ss_pred HHhCCC-ceeEEEEccCCCCCCCCccCcccccccchhhHHHHHhcCcccccCCCCCCEEEEEcCCCCCCCCChHHHHHHH
Q 004475 619 LAHAPH-LFCCGIARSGSYNKTLTPFGFQTEFRTLWEATNVYIEMSPITHANKIKKPILIIHGEVDDKVGLFPMQAERFF 697 (751)
Q Consensus 619 a~~~p~-~~~~~v~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~li~~G~~D~~vp~~~~~~~~~~ 697 (751)
+...+. .+.++|++++....... .......+.+++.|+|=|++.....+ ...+.+-.
T Consensus 211 la~~~~~~~daLV~I~a~~p~~~~-------------------n~~l~~~la~l~iPvLDi~~~~~~~~---~~~a~~R~ 268 (310)
T PF12048_consen 211 LAEKPPPMPDALVLINAYWPQPDR-------------------NPALAEQLAQLKIPVLDIYSADNPAS---QQTAKQRK 268 (310)
T ss_pred HhcCCCcccCeEEEEeCCCCcchh-------------------hhhHHHHhhccCCCEEEEecCCChHH---HHHHHHHH
Confidence 998754 47899999886331110 01122345678999999998873221 23333222
Q ss_pred HHHHhCC-CcEEEEEeCCCCCcCCccccHHHHHHHHHHHHHHH
Q 004475 698 DALKGHG-ALSRLVLLPFEHHVYAARENVMHVIWETDRWLQKY 739 (751)
Q Consensus 698 ~~l~~~~-~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~fl~~~ 739 (751)
...+.+. ...+-+.+++..|... .......++|..||..+
T Consensus 269 ~~a~r~~~~~YrQ~~L~~~~~~~~--~~~~~l~~rIrGWL~~~ 309 (310)
T PF12048_consen 269 QAAKRNKKPDYRQIQLPGLPDNPS--GWQEQLLRRIRGWLKRH 309 (310)
T ss_pred HHHHhccCCCceeEecCCCCCChh--hHHHHHHHHHHHHHHhh
Confidence 3333322 3345555566655542 22223888999999865
No 312
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=97.88 E-value=0.00016 Score=66.32 Aligned_cols=213 Identities=15% Similarity=0.219 Sum_probs=124.3
Q ss_pred EEeecCCCCCCCCcccccCCCCcccccceeecCCCCeEEEEEeecccccccCCceeEEEEEcCCCCeeeccCCCCccccc
Q 004475 8 GIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNA 87 (751)
Q Consensus 8 ~~~~~~~~~~~g~~~~l~~~~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~~~~~l~i~~~~~g~~~~lt~~~~~~~~~ 87 (751)
.+||..+ |.+..- +....-+...+||.|.++|+.-.. +....||-++-....++.+...++
T Consensus 84 kvw~a~t----gdelhs--f~hkhivk~~af~~ds~~lltgg~--------ekllrvfdln~p~App~E~~ghtg----- 144 (334)
T KOG0278|consen 84 KVWDAVT----GDELHS--FEHKHIVKAVAFSQDSNYLLTGGQ--------EKLLRVFDLNRPKAPPKEISGHTG----- 144 (334)
T ss_pred hhhhhhh----hhhhhh--hhhhheeeeEEecccchhhhccch--------HHHhhhhhccCCCCCchhhcCCCC-----
Confidence 4556655 555432 223334678899999999987221 223344444433333444433332
Q ss_pred eeeeeEEecCCcEEEEeecCCCCCCCCCCCCCCCCceeeccccccccchhhhhccCCccchhhhhhheeeEEEEEcC-CC
Q 004475 88 VFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DG 166 (751)
Q Consensus 88 ~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~G 166 (751)
++..+-|--..+.|+-.+.+ ..+.++|. +|
T Consensus 145 ~Ir~v~wc~eD~~iLSSadd-------------------------------------------------~tVRLWD~rTg 175 (334)
T KOG0278|consen 145 GIRTVLWCHEDKCILSSADD-------------------------------------------------KTVRLWDHRTG 175 (334)
T ss_pred cceeEEEeccCceEEeeccC-------------------------------------------------CceEEEEeccC
Confidence 57788888777777655322 35667777 77
Q ss_pred -CceecCCCceEEeeeeCCCCceEEEEEecCCcccccccCCCceeEEEEeCCCceeeeeccCCCCCCCCCccCCccCCCc
Q 004475 167 -TAKDFGTPAVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMR 245 (751)
Q Consensus 167 -~~~~lt~~~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 245 (751)
..+.|--...+.++..|+||+.|.+.- ...+-.||+.+=.+..-...|- ++.
T Consensus 176 t~v~sL~~~s~VtSlEvs~dG~ilTia~--------------gssV~Fwdaksf~~lKs~k~P~-------------nV~ 228 (334)
T KOG0278|consen 176 TEVQSLEFNSPVTSLEVSQDGRILTIAY--------------GSSVKFWDAKSFGLLKSYKMPC-------------NVE 228 (334)
T ss_pred cEEEEEecCCCCcceeeccCCCEEEEec--------------CceeEEeccccccceeeccCcc-------------ccc
Confidence 455554446778899999999887652 2246678776533322222222 233
Q ss_pred eeeeecCCCceEEEEEeccCCCCccccCcccceeeccCCCCCCCCceEe-EeeceeEE-EEEecCCceEEEeeeecccce
Q 004475 246 SISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEIL-HKLDLRFS-VSWCDDSLALVNETWYKTSQT 323 (751)
Q Consensus 246 ~~~~spdG~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l-~~~~~~~~-~~~spdg~~l~~~~~~~~~~~ 323 (751)
+.+.+|+.. ++++.. ....+|.+|... +...... ....+.+. +.|||||..-+..+ +.+..
T Consensus 229 SASL~P~k~--~fVaGg-----------ed~~~~kfDy~T--geEi~~~nkgh~gpVhcVrFSPdGE~yAsGS--EDGTi 291 (334)
T KOG0278|consen 229 SASLHPKKE--FFVAGG-----------EDFKVYKFDYNT--GEEIGSYNKGHFGPVHCVRFSPDGELYASGS--EDGTI 291 (334)
T ss_pred cccccCCCc--eEEecC-----------cceEEEEEeccC--CceeeecccCCCCceEEEEECCCCceeeccC--CCceE
Confidence 558889884 444331 123677777641 3222221 34456667 99999999655544 45567
Q ss_pred eEEEecCCC
Q 004475 324 RTWLVCPGS 332 (751)
Q Consensus 324 ~l~~~~~~~ 332 (751)
+||......
T Consensus 292 rlWQt~~~~ 300 (334)
T KOG0278|consen 292 RLWQTTPGK 300 (334)
T ss_pred EEEEecCCC
Confidence 899887654
No 313
>PRK02888 nitrous-oxide reductase; Validated
Probab=97.86 E-value=0.0028 Score=68.04 Aligned_cols=118 Identities=14% Similarity=0.061 Sum_probs=62.9
Q ss_pred ccceeec-----CCCCeEEEEEeecccccccCCceeEEEEEcCCCCeeeccCCCCccccceeeeeEE--ecCCcEEEEee
Q 004475 33 INFVSWS-----PDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVW--VNNSTLLIFTI 105 (751)
Q Consensus 33 ~~~p~~S-----PDG~~iaf~~~~~~~~~~~~~~~~l~i~~~~~g~~~~lt~~~~~~~~~~~~~~~w--spDg~~l~~~~ 105 (751)
..+|.+| -||+|| |+.. ..+.+|-+++++.-+-.+++..+... ++...++ .|.-++++...
T Consensus 127 ~HHp~~s~t~g~ydGr~~-find--------k~n~Rvari~l~~~~~~~i~~iPn~~---~~Hg~~~~~~p~t~yv~~~~ 194 (635)
T PRK02888 127 THHPHMSFTDGTYDGRYL-FIND--------KANTRVARIRLDVMKCDKITELPNVQ---GIHGLRPQKIPRTGYVFCNG 194 (635)
T ss_pred cCCCcccccCCccceeEE-EEec--------CCCcceEEEECccEeeceeEeCCCcc---CccccCccccCCccEEEeCc
Confidence 3456665 477776 5432 45688888888887777776655421 1222222 36666666553
Q ss_pred cCCCCCCCCCCCCCCCCceeeccccccccchhhhhccCCccchhhhhh--heeeEEEEEcCCC-C-ceecCCCceEEeee
Q 004475 106 PSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDY--YTTAQLVLGSLDG-T-AKDFGTPAVYTAVE 181 (751)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~~~~~~G-~-~~~lt~~~~~~~~~ 181 (751)
...... +.|+..+.. ...+.+-.+|.+. + ..++.-.+......
T Consensus 195 e~~~Pl---------------------------------pnDGk~l~~~~ey~~~vSvID~etmeV~~qV~Vdgnpd~v~ 241 (635)
T PRK02888 195 EFRIPL---------------------------------PNDGKDLDDPKKYRSLFTAVDAETMEVAWQVMVDGNLDNVD 241 (635)
T ss_pred cccccc---------------------------------CCCCCEeecccceeEEEEEEECccceEEEEEEeCCCcccce
Confidence 221110 011100000 0224555667633 2 23332234556789
Q ss_pred eCCCCceEEEEEec
Q 004475 182 PSPDQKYVLITSMH 195 (751)
Q Consensus 182 ~SpDG~~i~~~~~~ 195 (751)
++|||+++++++.+
T Consensus 242 ~spdGk~afvTsyN 255 (635)
T PRK02888 242 TDYDGKYAFSTCYN 255 (635)
T ss_pred ECCCCCEEEEeccC
Confidence 99999999998643
No 314
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.84 E-value=0.00035 Score=69.24 Aligned_cols=200 Identities=14% Similarity=0.066 Sum_probs=106.3
Q ss_pred ccceeecCCCCeEEEEEeecccccccCCceeEEEEEcCCCCeeeccCCCCccccceeeeeEEecCCcEEEEeecCCCCCC
Q 004475 33 INFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRDP 112 (751)
Q Consensus 33 ~~~p~~SPDG~~iaf~~~~~~~~~~~~~~~~l~i~~~~~g~~~~lt~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~ 112 (751)
..-.++++||+.||.... ++.-+||-++-.. ..+ .....+..+..+.|||||+.|++...+
T Consensus 147 ~k~vaf~~~gs~latgg~--------dg~lRv~~~Ps~~---t~l---~e~~~~~eV~DL~FS~dgk~lasig~d----- 207 (398)
T KOG0771|consen 147 QKVVAFNGDGSKLATGGT--------DGTLRVWEWPSML---TIL---EEIAHHAEVKDLDFSPDGKFLASIGAD----- 207 (398)
T ss_pred ceEEEEcCCCCEeeeccc--------cceEEEEecCcch---hhh---hhHhhcCccccceeCCCCcEEEEecCC-----
Confidence 356899999999998532 3444444433211 111 111123357899999999999998432
Q ss_pred CCCCCCCCCCceeeccccccccchhhhhccCCccchhhhhhheeeEEEEEcC-CC-CceecCCC---ceEEeeeeCCCC-
Q 004475 113 PKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DG-TAKDFGTP---AVYTAVEPSPDQ- 186 (751)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~G-~~~~lt~~---~~~~~~~~SpDG- 186 (751)
...++++ +| ...+.++. ..+....|+.|+
T Consensus 208 ---------------------------------------------~~~VW~~~~g~~~a~~t~~~k~~~~~~cRF~~d~~ 242 (398)
T KOG0771|consen 208 ---------------------------------------------SARVWSVNTGAALARKTPFSKDEMFSSCRFSVDNA 242 (398)
T ss_pred ---------------------------------------------ceEEEEeccCchhhhcCCcccchhhhhceecccCC
Confidence 3444555 66 55666643 445688899888
Q ss_pred --ceEEEEEecCCcccccccCCCceeEEEEeCCCceeeeeccCCCCCCCCCccCCccCCCceeeeecCCCceEEEEEecc
Q 004475 187 --KYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQD 264 (751)
Q Consensus 187 --~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~spdG~~~i~~~~~~~ 264 (751)
...++....+... -...++.+|+-+ . .-++ .........+..+..|+||+. ++...
T Consensus 243 ~~~l~laa~~~~~~~------v~~~~~~~w~~~-~-~l~~----------~~~~~~~~siSsl~VS~dGkf-~AlGT--- 300 (398)
T KOG0771|consen 243 QETLRLAASQFPGGG------VRLCDISLWSGS-N-FLRL----------RKKIKRFKSISSLAVSDDGKF-LALGT--- 300 (398)
T ss_pred CceEEEEEecCCCCc------eeEEEeeeeccc-c-ccch----------hhhhhccCcceeEEEcCCCcE-EEEec---
Confidence 3333322221100 001344444432 1 1111 000111235678999999998 66644
Q ss_pred CCCCccccCcccceeeccCCCCCCCCceEeE--eeceeEE-EEEecCCceEEEeeeecccceeEEEecCCC
Q 004475 265 RGDANVEVSPRDIIYTQPAEPAEGEKPEILH--KLDLRFS-VSWCDDSLALVNETWYKTSQTRTWLVCPGS 332 (751)
Q Consensus 265 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~--~~~~~~~-~~~spdg~~l~~~~~~~~~~~~l~~~~~~~ 332 (751)
..+.+-+++.. .-+...+. .+.+.+. +.|+||.++++-.+. +....|..+..+.
T Consensus 301 ---------~dGsVai~~~~---~lq~~~~vk~aH~~~VT~ltF~Pdsr~~~svSs--~~~~~v~~l~vd~ 357 (398)
T KOG0771|consen 301 ---------MDGSVAIYDAK---SLQRLQYVKEAHLGFVTGLTFSPDSRYLASVSS--DNEAAVTKLAVDK 357 (398)
T ss_pred ---------cCCcEEEEEec---eeeeeEeehhhheeeeeeEEEcCCcCccccccc--CCceeEEEEeecc
Confidence 22455666553 11221222 2334556 999999998876442 2233555555433
No 315
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=97.84 E-value=0.0017 Score=64.58 Aligned_cols=206 Identities=11% Similarity=0.099 Sum_probs=121.8
Q ss_pred cceeEEeecCCCCCCCCcccccCCCCcccccceeecCCCCeEEEEEeecccccccCCceeEEEEEcCCCC-eeeccCCCC
Q 004475 4 FTGIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGE-AKPLFESPD 82 (751)
Q Consensus 4 ~~~~~~~~~~~~~~~g~~~~l~~~~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~~~~~l~i~~~~~g~-~~~lt~~~~ 82 (751)
...|++|.+.. .....+. .+....++..+..|.|.|+...++ ....-.-+..+|. ...++....
T Consensus 282 d~~i~vws~~~----~s~~~~~-~~h~~~V~~ls~h~tgeYllsAs~----------d~~w~Fsd~~~g~~lt~vs~~~s 346 (506)
T KOG0289|consen 282 DEIIRVWSVPL----SSEPTSS-RPHEEPVTGLSLHPTGEYLLSASN----------DGTWAFSDISSGSQLTVVSDETS 346 (506)
T ss_pred cceEEeecccc----ccCcccc-ccccccceeeeeccCCcEEEEecC----------CceEEEEEccCCcEEEEEeeccc
Confidence 34788888866 4444443 456667899999999999998753 2334444555543 233322211
Q ss_pred ccccceeeeeEEecCCcEEEEeecCCCCCCCCCCCCCCCCceeeccccccccchhhhhccCCccchhhhhhheeeEEEEE
Q 004475 83 ICLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLG 162 (751)
Q Consensus 83 ~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 162 (751)
.-.+...++.|||-.+...+. .+.|-++
T Consensus 347 ---~v~~ts~~fHpDgLifgtgt~-------------------------------------------------d~~vkiw 374 (506)
T KOG0289|consen 347 ---DVEYTSAAFHPDGLIFGTGTP-------------------------------------------------DGVVKIW 374 (506)
T ss_pred ---cceeEEeeEcCCceEEeccCC-------------------------------------------------CceEEEE
Confidence 113567899999943332211 1578888
Q ss_pred cC-CC-CceecCCC-ceEEeeeeCCCCceEEEEEecCCcccccccCCCceeEEEEeCCCceeeeeccCCCCCCCCCccCC
Q 004475 163 SL-DG-TAKDFGTP-AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNS 239 (751)
Q Consensus 163 ~~-~G-~~~~lt~~-~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~ 239 (751)
|+ ++ ...++..+ +.+..+.||.+|-+++..+++. .+.+||+..-+ .+...+..++
T Consensus 375 dlks~~~~a~Fpght~~vk~i~FsENGY~Lat~add~-------------~V~lwDLRKl~--n~kt~~l~~~------- 432 (506)
T KOG0289|consen 375 DLKSQTNVAKFPGHTGPVKAISFSENGYWLATAADDG-------------SVKLWDLRKLK--NFKTIQLDEK------- 432 (506)
T ss_pred EcCCccccccCCCCCCceeEEEeccCceEEEEEecCC-------------eEEEEEehhhc--ccceeecccc-------
Confidence 88 55 55566556 7889999999999999886652 48899986432 2211122211
Q ss_pred ccCCCceeeeecCCCceEEEEEeccCCCCccccCcccceeeccCCCCCCCCceEeEee---ceeEE-EEEecCCceEEEe
Q 004475 240 VREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKL---DLRFS-VSWCDDSLALVNE 315 (751)
Q Consensus 240 ~~~~~~~~~~spdG~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~---~~~~~-~~~spdg~~l~~~ 315 (751)
.++..+.|.+.|.+++.+.+ .-++|.+.-. ....+.+... .+... +.|..+.++++-.
T Consensus 433 --~~v~s~~fD~SGt~L~~~g~-------------~l~Vy~~~k~---~k~W~~~~~~~~~sg~st~v~Fg~~aq~l~s~ 494 (506)
T KOG0289|consen 433 --KEVNSLSFDQSGTYLGIAGS-------------DLQVYICKKK---TKSWTEIKELADHSGLSTGVRFGEHAQYLAST 494 (506)
T ss_pred --ccceeEEEcCCCCeEEeecc-------------eeEEEEEecc---cccceeeehhhhcccccceeeecccceEEeec
Confidence 23457899999998444421 1255655532 3344444332 22223 5666666655544
Q ss_pred e
Q 004475 316 T 316 (751)
Q Consensus 316 ~ 316 (751)
+
T Consensus 495 s 495 (506)
T KOG0289|consen 495 S 495 (506)
T ss_pred c
Confidence 4
No 316
>PF07819 PGAP1: PGAP1-like protein; InterPro: IPR012908 The sequences found in this family are similar to PGAP1 (Q765A7 from SWISSPROT). This is an endoplasmic reticulum membrane protein with a catalytic serine-containing motif that is conserved in a number of lipases. PGAP1 functions as a GPI inositol-deacylase; this deacylation is important for the efficient transport of GPI-anchored proteins from the endoplasmic reticulum to the Golgi body [].; GO: 0016788 hydrolase activity, acting on ester bonds, 0006505 GPI anchor metabolic process, 0006886 intracellular protein transport, 0031227 intrinsic to endoplasmic reticulum membrane
Probab=97.83 E-value=0.00019 Score=68.89 Aligned_cols=58 Identities=14% Similarity=0.130 Sum_probs=41.0
Q ss_pred HHHHHHHHHHHHHHHcC---CCCCCcEEEEEeChHHHHHHHHHHhCC---CceeEEEEccCCCC
Q 004475 580 QLVSSAEAAVEEVVRRG---VADPSRIAVGGHSYGAFMTAHLLAHAP---HLFCCGIARSGSYN 637 (751)
Q Consensus 580 ~~~~d~~~~v~~l~~~~---~id~~~i~l~G~S~GG~~a~~~a~~~p---~~~~~~v~~~~~~d 637 (751)
...+-+.++++.+.+.. ...+.+|.++||||||.+|-.++...+ +.++.+|.++.+..
T Consensus 61 ~q~~~~~~~i~~i~~~~~~~~~~~~~vilVgHSmGGlvar~~l~~~~~~~~~v~~iitl~tPh~ 124 (225)
T PF07819_consen 61 RQAEFLAEAIKYILELYKSNRPPPRSVILVGHSMGGLVARSALSLPNYDPDSVKTIITLGTPHR 124 (225)
T ss_pred HHHHHHHHHHHHHHHhhhhccCCCCceEEEEEchhhHHHHHHHhccccccccEEEEEEEcCCCC
Confidence 33455556666665543 345789999999999999988876543 46888888776543
No 317
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=97.81 E-value=0.00027 Score=64.92 Aligned_cols=147 Identities=11% Similarity=0.050 Sum_probs=86.1
Q ss_pred CceecCCC-ceEEeeeeCCCCceEEEEEecCCcccccccCCCceeEEEEeCCCceeeeeccCCCCCCCCCccCCccCCCc
Q 004475 167 TAKDFGTP-AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMR 245 (751)
Q Consensus 167 ~~~~lt~~-~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 245 (751)
.++.+..+ +.+..+.|-...+.|+-++.+ ..+.+||..++...+-...+ ..+.
T Consensus 135 pp~E~~ghtg~Ir~v~wc~eD~~iLSSadd-------------~tVRLWD~rTgt~v~sL~~~-------------s~Vt 188 (334)
T KOG0278|consen 135 PPKEISGHTGGIRTVLWCHEDKCILSSADD-------------KTVRLWDHRTGTEVQSLEFN-------------SPVT 188 (334)
T ss_pred CchhhcCCCCcceeEEEeccCceEEeeccC-------------CceEEEEeccCcEEEEEecC-------------CCCc
Confidence 44555555 788888898888888776443 35789999876543221111 2244
Q ss_pred eeeeecCCCceEEEEEeccCCCCccccCcccceeeccCCCCCCCCceEeEee--ceeEE-EEEecCCceEEEeeeecccc
Q 004475 246 SISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKL--DLRFS-VSWCDDSLALVNETWYKTSQ 322 (751)
Q Consensus 246 ~~~~spdG~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~--~~~~~-~~~spdg~~l~~~~~~~~~~ 322 (751)
++..|+||+. |..+. ...+..++.+ ....|... +..+. .+.+|+...++... ..
T Consensus 189 SlEvs~dG~i-lTia~-------------gssV~Fwdak-----sf~~lKs~k~P~nV~SASL~P~k~~fVaGg----ed 245 (334)
T KOG0278|consen 189 SLEVSQDGRI-LTIAY-------------GSSVKFWDAK-----SFGLLKSYKMPCNVESASLHPKKEFFVAGG----ED 245 (334)
T ss_pred ceeeccCCCE-EEEec-------------CceeEEeccc-----cccceeeccCccccccccccCCCceEEecC----cc
Confidence 7799999996 54432 1245555543 22233333 33444 78889987655533 23
Q ss_pred eeEEEecCCCCCCcceeee-ecccccccCCCCCCCeeeCCCCCEEEEee
Q 004475 323 TRTWLVCPGSKDVAPRVLF-DRVFENVYSDPGSPMMTRTSTGTNVIAKI 370 (751)
Q Consensus 323 ~~l~~~~~~~~~~~~~~l~-~~~~~~~~~~~~~~~~~~spDG~~l~~~~ 370 (751)
.-+|.+|.+++ +.+... ......+-. +.|||||..-+..+
T Consensus 246 ~~~~kfDy~Tg--eEi~~~nkgh~gpVhc------VrFSPdGE~yAsGS 286 (334)
T KOG0278|consen 246 FKVYKFDYNTG--EEIGSYNKGHFGPVHC------VRFSPDGELYASGS 286 (334)
T ss_pred eEEEEEeccCC--ceeeecccCCCCceEE------EEECCCCceeeccC
Confidence 46888888886 223332 222222222 78999997655555
No 318
>COG3150 Predicted esterase [General function prediction only]
Probab=97.80 E-value=0.00034 Score=60.47 Aligned_cols=139 Identities=12% Similarity=0.111 Sum_probs=73.3
Q ss_pred hHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEccCCCCCCCCccCcccccc-----c
Q 004475 577 FVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGSYNKTLTPFGFQTEFR-----T 651 (751)
Q Consensus 577 ~~~~~~~d~~~~v~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~~d~~~~~~~~~~~~~-----~ 651 (751)
+..+.++.+..+|..+. | ..++|+|.|.||+.|.+++.++. ++++ ++.|..-......++..... .
T Consensus 41 ~p~~a~~ele~~i~~~~-----~-~~p~ivGssLGGY~At~l~~~~G--irav-~~NPav~P~e~l~gylg~~en~ytg~ 111 (191)
T COG3150 41 DPQQALKELEKAVQELG-----D-ESPLIVGSSLGGYYATWLGFLCG--IRAV-VFNPAVRPYELLTGYLGRPENPYTGQ 111 (191)
T ss_pred CHHHHHHHHHHHHHHcC-----C-CCceEEeecchHHHHHHHHHHhC--Chhh-hcCCCcCchhhhhhhcCCCCCCCCcc
Confidence 34555665556655442 2 24899999999999999999883 3433 34443221100001111111 0
Q ss_pred chhh-HHHHHhcCcccccCCCCCC-EEEEEcC-CCCCCCCChHHHHHHHHHHHhCCCcEEEEEeCCCCCcCCccccHHHH
Q 004475 652 LWEA-TNVYIEMSPITHANKIKKP-ILIIHGE-VDDKVGLFPMQAERFFDALKGHGALSRLVLLPFEHHVYAARENVMHV 728 (751)
Q Consensus 652 ~~~~-~~~~~~~~~~~~~~~~~~P-~li~~G~-~D~~vp~~~~~~~~~~~~l~~~~~~~~~~~~~~~~H~~~~~~~~~~~ 728 (751)
.|.. +....+... ..+..++.| .|++... .|.+.. ..++.+.+... ...+..|++|.|.. ....
T Consensus 112 ~y~le~~hI~~l~~-~~~~~l~~p~~~~lL~qtgDEvLD--yr~a~a~y~~~-------~~~V~dgg~H~F~~---f~~~ 178 (191)
T COG3150 112 EYVLESRHIATLCV-LQFRELNRPRCLVLLSQTGDEVLD--YRQAVAYYHPC-------YEIVWDGGDHKFKG---FSRH 178 (191)
T ss_pred eEEeehhhHHHHHH-hhccccCCCcEEEeecccccHHHH--HHHHHHHhhhh-------hheeecCCCccccc---hHHh
Confidence 1100 011111111 122333333 4444444 488765 66666655443 46677889999865 5577
Q ss_pred HHHHHHHHH
Q 004475 729 IWETDRWLQ 737 (751)
Q Consensus 729 ~~~~~~fl~ 737 (751)
++.|+.|..
T Consensus 179 l~~i~aF~g 187 (191)
T COG3150 179 LQRIKAFKG 187 (191)
T ss_pred HHHHHHHhc
Confidence 788888864
No 319
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=97.79 E-value=0.017 Score=58.84 Aligned_cols=57 Identities=7% Similarity=0.137 Sum_probs=40.6
Q ss_pred ccceeecCCCCeEEEEEeecccccccCCceeEEEEEcCCCCe--eeccCCCCccccceeeeeEEecCCcEE
Q 004475 33 INFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEA--KPLFESPDICLNAVFGSFVWVNNSTLL 101 (751)
Q Consensus 33 ~~~p~~SPDG~~iaf~~~~~~~~~~~~~~~~l~i~~~~~g~~--~~lt~~~~~~~~~~~~~~~wspDg~~l 101 (751)
+..+.|.|-+..|..+ -++++|+.++++++.. ++-+...... ..+..++|.++|..|
T Consensus 203 v~~a~FHPtd~nliit----------~Gk~H~~Fw~~~~~~l~k~~~~fek~ek--k~Vl~v~F~engdvi 261 (626)
T KOG2106|consen 203 VFLATFHPTDPNLIIT----------CGKGHLYFWTLRGGSLVKRQGIFEKREK--KFVLCVTFLENGDVI 261 (626)
T ss_pred EEEEEeccCCCcEEEE----------eCCceEEEEEccCCceEEEeeccccccc--eEEEEEEEcCCCCEE
Confidence 5678899999988776 4678999999998863 3333332221 246788999999865
No 320
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=97.79 E-value=0.0043 Score=62.22 Aligned_cols=49 Identities=16% Similarity=0.267 Sum_probs=34.4
Q ss_pred eEEEEEcCCCCceec-CCC-ceEEeeeeCCCCceEEEEEecCCcccccccCCCceeEEEEeCC
Q 004475 157 AQLVLGSLDGTAKDF-GTP-AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTD 217 (751)
Q Consensus 157 ~~l~~~~~~G~~~~l-t~~-~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~ 217 (751)
..||+++.+|..+++ .+. ..-..++|||||+.++++-.. ...|++++.+
T Consensus 143 G~lyr~~p~g~~~~l~~~~~~~~NGla~SpDg~tly~aDT~------------~~~i~r~~~d 193 (307)
T COG3386 143 GSLYRVDPDGGVVRLLDDDLTIPNGLAFSPDGKTLYVADTP------------ANRIHRYDLD 193 (307)
T ss_pred ceEEEEcCCCCEEEeecCcEEecCceEECCCCCEEEEEeCC------------CCeEEEEecC
Confidence 589999986654444 443 333489999999999887443 3467777765
No 321
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=97.75 E-value=0.044 Score=52.42 Aligned_cols=123 Identities=18% Similarity=0.310 Sum_probs=76.9
Q ss_pred cccCCCCcccccceeecCCCCeEEEEEeecccccccCCceeEEEEEcCCCCe--eeccCCCCccccceeeeeEEecCCcE
Q 004475 23 EVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEA--KPLFESPDICLNAVFGSFVWVNNSTL 100 (751)
Q Consensus 23 ~l~~~~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~~~~~l~i~~~~~g~~--~~lt~~~~~~~~~~~~~~~wspDg~~ 100 (751)
.|++-|+. .++..+|||.-..++-... .++..++|-+... |.. +..-... +.+-.++||-||..
T Consensus 21 ev~~pP~D-sIS~l~FSP~~~~~~~A~S-------WD~tVR~wevq~~-g~~~~ka~~~~~-----~PvL~v~Wsddgsk 86 (347)
T KOG0647|consen 21 EVPNPPED-SISALAFSPQADNLLAAGS-------WDGTVRIWEVQNS-GQLVPKAQQSHD-----GPVLDVCWSDDGSK 86 (347)
T ss_pred ecCCCccc-chheeEeccccCceEEecc-------cCCceEEEEEecC-CcccchhhhccC-----CCeEEEEEccCCce
Confidence 34443443 6889999994444443321 1566677766643 332 2221112 23668899999977
Q ss_pred EEEeecCCCCCCCCCCCCCCCCceeeccccccccchhhhhccCCccchhhhhhheeeEEEEEcC-CCCceecCCC-ceEE
Q 004475 101 LIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DGTAKDFGTP-AVYT 178 (751)
Q Consensus 101 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~G~~~~lt~~-~~~~ 178 (751)
++....+ .++-++|+ +|+..++..+ +.+.
T Consensus 87 Vf~g~~D-------------------------------------------------k~~k~wDL~S~Q~~~v~~Hd~pvk 117 (347)
T KOG0647|consen 87 VFSGGCD-------------------------------------------------KQAKLWDLASGQVSQVAAHDAPVK 117 (347)
T ss_pred EEeeccC-------------------------------------------------CceEEEEccCCCeeeeeeccccee
Confidence 7665332 47788899 8899999877 7788
Q ss_pred eeeeCCCCce-EEEEEecCCcccccccCCCceeEEEEeCCCce
Q 004475 179 AVEPSPDQKY-VLITSMHRPYSYKVPCARFSQKVQVWTTDGKL 220 (751)
Q Consensus 179 ~~~~SpDG~~-i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~ 220 (751)
.+.|-+-..+ ++++ +.+...|-.||.....
T Consensus 118 t~~wv~~~~~~cl~T------------GSWDKTlKfWD~R~~~ 148 (347)
T KOG0647|consen 118 TCHWVPGMNYQCLVT------------GSWDKTLKFWDTRSSN 148 (347)
T ss_pred EEEEecCCCcceeEe------------cccccceeecccCCCC
Confidence 8888876652 3332 3345678889887443
No 322
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.75 E-value=0.00056 Score=76.27 Aligned_cols=259 Identities=13% Similarity=0.163 Sum_probs=137.0
Q ss_pred ccceeecCCCCeEEEEEe-eccccc--ccCCceeEEEEEcCCCCe--eeccCCCCccccceeeeeEEecCCcE----EEE
Q 004475 33 INFVSWSPDGKRIAFSVR-VDEEDN--VSSCKLRVWIADAETGEA--KPLFESPDICLNAVFGSFVWVNNSTL----LIF 103 (751)
Q Consensus 33 ~~~p~~SPDG~~iaf~~~-~~~~~~--~~~~~~~l~i~~~~~g~~--~~lt~~~~~~~~~~~~~~~wspDg~~----l~~ 103 (751)
-...+|||+++.+.-+.. ....+. ..+...+||-++....+. +++-.... ...+..++|++-|.. |+=
T Consensus 9 ta~~awSp~~~~~laagt~aq~~D~sfst~~slEifeld~~~~~~dlk~~~s~~s---~~rF~kL~W~~~g~~~~GlIaG 85 (1049)
T KOG0307|consen 9 TATFAWSPASPPLLAAGTAAQQFDASFSTSASLEIFELDFSDESSDLKPVGSLQS---SNRFNKLAWGSYGSHSHGLIAG 85 (1049)
T ss_pred cceEEecCCCchhhHHHhhhhccccccccccccceeeecccCccccccccccccc---cccceeeeecccCCCccceeec
Confidence 345799999962222211 111111 124556788877766552 44432222 224678999988876 332
Q ss_pred eecCCCCCCCCCCCCCCCCceeeccccccccchhhhhccCCccchhhhhhheeeEEEEEcCC----C-Cc---eecCCC-
Q 004475 104 TIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSLD----G-TA---KDFGTP- 174 (751)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----G-~~---~~lt~~- 174 (751)
..++ +.|.+++.+ + +. .+...+
T Consensus 86 G~ed-------------------------------------------------G~I~ly~p~~~~~~~~~~~la~~~~h~ 116 (1049)
T KOG0307|consen 86 GLED-------------------------------------------------GNIVLYDPASIIANASEEVLATKSKHT 116 (1049)
T ss_pred cccC-------------------------------------------------CceEEecchhhccCcchHHHhhhcccC
Confidence 2111 355555552 2 22 222334
Q ss_pred ceEEeeeeCCCCceEEEEEecCCcccccccCCCceeEEEEeCCCceeeeeccCCCCCCCCCccCCccCCCceeeeecCCC
Q 004475 175 AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKP 254 (751)
Q Consensus 175 ~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~spdG~ 254 (751)
+.+..+.|+|.+.-++-+..+ ..+|++||+..-+ ...+.. ... ....+..++|+.-=.
T Consensus 117 G~V~gLDfN~~q~nlLASGa~------------~geI~iWDlnn~~-tP~~~~--~~~-------~~~eI~~lsWNrkvq 174 (1049)
T KOG0307|consen 117 GPVLGLDFNPFQGNLLASGAD------------DGEILIWDLNKPE-TPFTPG--SQA-------PPSEIKCLSWNRKVS 174 (1049)
T ss_pred CceeeeeccccCCceeeccCC------------CCcEEEeccCCcC-CCCCCC--CCC-------CcccceEeccchhhh
Confidence 788899999999855443332 4689999997532 111111 100 123456788887766
Q ss_pred ceEEEEEeccCCCCccccCcccceeeccCCCCCCCCceEeEee--ceeEE-EEEecCCceEEEeeeecccceeEEEecCC
Q 004475 255 STLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKL--DLRFS-VSWCDDSLALVNETWYKTSQTRTWLVCPG 331 (751)
Q Consensus 255 ~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~--~~~~~-~~~spdg~~l~~~~~~~~~~~~l~~~~~~ 331 (751)
+ |+. + ...++..-++|+.. + .....+... ...++ +.|.||+..-+..+..+...-.|-+.|+.
T Consensus 175 h-ILA-S----------~s~sg~~~iWDlr~-~-~pii~ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR 240 (1049)
T KOG0307|consen 175 H-ILA-S----------GSPSGRAVIWDLRK-K-KPIIKLSDTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLR 240 (1049)
T ss_pred H-Hhh-c----------cCCCCCceeccccC-C-CcccccccCCCccceeeeeeCCCCceeeeeecCCCCCceeEeeccc
Confidence 6 332 1 11335666777741 1 112222222 24466 99999988744444333333344444443
Q ss_pred CCCCcceeeeecccccccCCCCCCCeeeCCCCCEEEEeeeecCCcceEEEEccCCCCCCCCCceeEEEecCCCce
Q 004475 332 SKDVAPRVLFDRVFENVYSDPGSPMMTRTSTGTNVIAKIKKENDEQIYILLNGRGFTPEGNIPFLDLFDINTGSK 406 (751)
Q Consensus 332 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~spDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~ 406 (751)
-. ..+.++.......+.. +.|++.+..+++.+ +...++..|+.++|+.
T Consensus 241 ~a-ssP~k~~~~H~~Gils------lsWc~~D~~lllSs--------------------gkD~~ii~wN~~tgEv 288 (1049)
T KOG0307|consen 241 FA-SSPLKILEGHQRGILS------LSWCPQDPRLLLSS--------------------GKDNRIICWNPNTGEV 288 (1049)
T ss_pred cc-CCchhhhcccccceee------eccCCCCchhhhcc--------------------cCCCCeeEecCCCceE
Confidence 22 1223332332222222 77999887777766 2334788999999876
No 323
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=97.73 E-value=0.0058 Score=55.98 Aligned_cols=191 Identities=13% Similarity=0.137 Sum_probs=110.5
Q ss_pred cccceeecCCCCeEEEEEeecccccccCCceeEEEEEcCCCCeeeccCCCCccccceeeeeEEecCCcEEEEeecCCCCC
Q 004475 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRD 111 (751)
Q Consensus 32 ~~~~p~~SPDG~~iaf~~~~~~~~~~~~~~~~l~i~~~~~g~~~~lt~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~ 111 (751)
.+..+++.-||++.+... ....|.++++..|....-..+.+++ +...+-|-|...++.. .++
T Consensus 19 aV~avryN~dGnY~ltcG----------sdrtvrLWNp~rg~liktYsghG~E----VlD~~~s~Dnskf~s~----GgD 80 (307)
T KOG0316|consen 19 AVRAVRYNVDGNYCLTCG----------SDRTVRLWNPLRGALIKTYSGHGHE----VLDAALSSDNSKFASC----GGD 80 (307)
T ss_pred ceEEEEEccCCCEEEEcC----------CCceEEeecccccceeeeecCCCce----eeeccccccccccccC----CCC
Confidence 578899999999988753 3356777787776644433333332 4555667777666543 111
Q ss_pred CCCCCCCCCCCceeeccccccccchhhhhccCCccchhhhhhheeeEEEEEcC-CC-CceecCCC-ceEEeeeeCCCCce
Q 004475 112 PPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DG-TAKDFGTP-AVYTAVEPSPDQKY 188 (751)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~G-~~~~lt~~-~~~~~~~~SpDG~~ 188 (751)
..++++|+ +| ..+++..+ +.+..+.|..+...
T Consensus 81 ---------------------------------------------k~v~vwDV~TGkv~Rr~rgH~aqVNtV~fNeesSV 115 (307)
T KOG0316|consen 81 ---------------------------------------------KAVQVWDVNTGKVDRRFRGHLAQVNTVRFNEESSV 115 (307)
T ss_pred ---------------------------------------------ceEEEEEcccCeeeeecccccceeeEEEecCcceE
Confidence 47888899 88 56777666 77888999866655
Q ss_pred EEEEEecCCcccccccCCCceeEEEEeCCCceeeeeccCCCCCCCCCccCCccCCCceeeeecCCCceEEEEEeccCCCC
Q 004475 189 VLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDA 268 (751)
Q Consensus 189 i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~spdG~~~i~~~~~~~~~~~ 268 (751)
++-. .|...+.+||-.....+.+-.. +....++..+..+ +.. |+.-+
T Consensus 116 v~Sg-------------sfD~s~r~wDCRS~s~ePiQil----------dea~D~V~Si~v~--~he-IvaGS------- 162 (307)
T KOG0316|consen 116 VASG-------------SFDSSVRLWDCRSRSFEPIQIL----------DEAKDGVSSIDVA--EHE-IVAGS------- 162 (307)
T ss_pred EEec-------------cccceeEEEEcccCCCCccchh----------hhhcCceeEEEec--ccE-EEeec-------
Confidence 4433 3455788898875544332111 1111112122221 111 33322
Q ss_pred ccccCcccceeeccCCCCCCCCceEeE--eeceeEE-EEEecCCceEEEeeeecccceeEEEecCCCC
Q 004475 269 NVEVSPRDIIYTQPAEPAEGEKPEILH--KLDLRFS-VSWCDDSLALVNETWYKTSQTRTWLVCPGSK 333 (751)
Q Consensus 269 ~~~~~~~~~l~~~~~~~~~~~~~~~l~--~~~~~~~-~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~ 333 (751)
..+.+.++++- .+ .++ -....+. +.||+||+.++.++- .+.|-++|.+++
T Consensus 163 -----~DGtvRtydiR---~G---~l~sDy~g~pit~vs~s~d~nc~La~~l----~stlrLlDk~tG 215 (307)
T KOG0316|consen 163 -----VDGTVRTYDIR---KG---TLSSDYFGHPITSVSFSKDGNCSLASSL----DSTLRLLDKETG 215 (307)
T ss_pred -----cCCcEEEEEee---cc---eeehhhcCCcceeEEecCCCCEEEEeec----cceeeecccchh
Confidence 22455555552 11 111 1233455 899999999877663 356778888885
No 324
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=97.73 E-value=5.4e-05 Score=49.73 Aligned_cols=30 Identities=27% Similarity=0.586 Sum_probs=22.4
Q ss_pred cccceeecCCCCeEEEEEeecccccccCCceeEEE
Q 004475 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWI 66 (751)
Q Consensus 32 ~~~~p~~SPDG~~iaf~~~~~~~~~~~~~~~~l~i 66 (751)
....|+|||||++|+|++.+++ .+..+||+
T Consensus 10 ~~~~p~~SpDGk~i~f~s~~~~-----~g~~diy~ 39 (39)
T PF07676_consen 10 DDGSPAWSPDGKYIYFTSNRND-----RGSFDIYV 39 (39)
T ss_dssp SEEEEEE-TTSSEEEEEEECT-------SSEEEEE
T ss_pred cccCEEEecCCCEEEEEecCCC-----CCCcCEEC
Confidence 5789999999999999987421 36677875
No 325
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=97.73 E-value=0.0023 Score=62.92 Aligned_cols=168 Identities=17% Similarity=0.110 Sum_probs=90.8
Q ss_pred CCCeeeccCCCCccccceeeeeEEecCCcEEEEeecCCCCCCCCCCCCCCCCceeeccccccccchhhhhccCCccchhh
Q 004475 71 TGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESL 150 (751)
Q Consensus 71 ~g~~~~lt~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (751)
++..+++...... ....+..+++|+||+.+++.... .
T Consensus 9 ~~~~~pv~g~~~~-~~~~~~s~AvS~dg~~~A~v~~~-~----------------------------------------- 45 (253)
T PF10647_consen 9 GGGVTPVPGALGE-GGYDVTSPAVSPDGSRVAAVSEG-D----------------------------------------- 45 (253)
T ss_pred CCceeECCCCcCc-CCccccceEECCCCCeEEEEEEc-C-----------------------------------------
Confidence 4555555322221 11135688999999999998611 1
Q ss_pred hhhheeeEEEEEcCCCCceecCCCceEEeeeeCCCCceEEEEEecCCcccccccCCCceeEEEEeCCCc-eeeeeccCCC
Q 004475 151 FDYYTTAQLVLGSLDGTAKDFGTPAVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGK-LVRELCDLPP 229 (751)
Q Consensus 151 ~~~~~~~~l~~~~~~G~~~~lt~~~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~-~~~~l~~~~~ 229 (751)
....|+.....+..+.+.....+..++|++||...++.. ... ...+.+...++. ....+ ..+.
T Consensus 46 ----~~~~L~~~~~~~~~~~~~~g~~l~~PS~d~~g~~W~v~~-~~~----------~~~~~~~~~~g~~~~~~v-~~~~ 109 (253)
T PF10647_consen 46 ----GGRSLYVGPAGGPVRPVLTGGSLTRPSWDPDGWVWTVDD-GSG----------GVRVVRDSASGTGEPVEV-DWPG 109 (253)
T ss_pred ----CCCEEEEEcCCCcceeeccCCccccccccCCCCEEEEEc-CCC----------ceEEEEecCCCcceeEEe-cccc
Confidence 115888888777666665456888999999976555443 211 111222122222 11111 1111
Q ss_pred CCCCCCccCCccCCCceeeeecCCCceEEEEEeccCCCCccccCcccceeeccCCCCCCCCceEe------E-eeceeEE
Q 004475 230 AEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEIL------H-KLDLRFS 302 (751)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~spdG~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l------~-~~~~~~~ 302 (751)
. ...+.++.+||||.+ ++++... ...++|++..+....++.+..+ . .....+.
T Consensus 110 ~----------~~~I~~l~vSpDG~R-vA~v~~~---------~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~ 169 (253)
T PF10647_consen 110 L----------RGRITALRVSPDGTR-VAVVVED---------GGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVT 169 (253)
T ss_pred c----------CCceEEEEECCCCcE-EEEEEec---------CCCCeEEEEEEEeCCCCCcceeccceEecccccCcce
Confidence 0 014668999999999 5554321 1224566655432222222222 2 1233455
Q ss_pred -EEEecCCceEEEeee
Q 004475 303 -VSWCDDSLALVNETW 317 (751)
Q Consensus 303 -~~~spdg~~l~~~~~ 317 (751)
+.|++++..++....
T Consensus 170 ~v~W~~~~~L~V~~~~ 185 (253)
T PF10647_consen 170 DVAWSDDSTLVVLGRS 185 (253)
T ss_pred eeeecCCCEEEEEeCC
Confidence 899999997666553
No 326
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=97.68 E-value=0.0033 Score=66.35 Aligned_cols=107 Identities=7% Similarity=0.026 Sum_probs=59.3
Q ss_pred CceeeeecCCCceEEEEEeccCCCCccccCcccceeeccCCCCCCCCceEeEeeceeEE-EEEecCCceEEEeeeecccc
Q 004475 244 MRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFS-VSWCDDSLALVNETWYKTSQ 322 (751)
Q Consensus 244 ~~~~~~spdG~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~-~~~spdg~~l~~~~~~~~~~ 322 (751)
+..++.||+|+. |+-+-.. .......|++++.. . =.....|..+...+. +.|||||++|+..+. ++.
T Consensus 528 v~~l~~s~~gnl-iASaCKS-------~~~ehAvI~lw~t~-~-W~~~~~L~~HsLTVT~l~FSpdg~~LLsvsR--DRt 595 (764)
T KOG1063|consen 528 VYALAISPTGNL-IASACKS-------SLKEHAVIRLWNTA-N-WLQVQELEGHSLTVTRLAFSPDGRYLLSVSR--DRT 595 (764)
T ss_pred EEEEEecCCCCE-Eeehhhh-------CCccceEEEEEecc-c-hhhhheecccceEEEEEEECCCCcEEEEeec--Cce
Confidence 567788899886 4432211 11122467777763 1 123445667777778 999999999887663 333
Q ss_pred eeEEEecCCCCCCcceee--eecccccccCCCCCCCeeeCCCCCEEEEee
Q 004475 323 TRTWLVCPGSKDVAPRVL--FDRVFENVYSDPGSPMMTRTSTGTNVIAKI 370 (751)
Q Consensus 323 ~~l~~~~~~~~~~~~~~l--~~~~~~~~~~~~~~~~~~~spDG~~l~~~~ 370 (751)
-.||...-+.. .+.+ . ........|. -.|+||+++++..+
T Consensus 596 ~sl~~~~~~~~-~e~~-fa~~k~HtRIIWd------csW~pde~~FaTaS 637 (764)
T KOG1063|consen 596 VSLYEVQEDIK-DEFR-FACLKAHTRIIWD------CSWSPDEKYFATAS 637 (764)
T ss_pred EEeeeeecccc-hhhh-hccccccceEEEE------cccCcccceeEEec
Confidence 45665522111 1111 0 0011111222 45999999977666
No 327
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=97.67 E-value=0.0018 Score=65.51 Aligned_cols=174 Identities=11% Similarity=0.153 Sum_probs=114.1
Q ss_pred cccceeecCCCCeEEEEEeecccccccCCceeEEEEEcCCCC-eeeccCCCCccccceeeeeEEecCCcEEEEeecCCCC
Q 004475 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGE-AKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRR 110 (751)
Q Consensus 32 ~~~~p~~SPDG~~iaf~~~~~~~~~~~~~~~~l~i~~~~~g~-~~~lt~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~ 110 (751)
.+....+.-...+||-++ .+++|-+..+.++. ...++...+. .++.+.+||-.+.|+.+..+
T Consensus 123 tvt~v~YN~~DeyiAsvs----------~gGdiiih~~~t~~~tt~f~~~sgq----svRll~ys~skr~lL~~asd--- 185 (673)
T KOG4378|consen 123 TVTYVDYNNTDEYIASVS----------DGGDIIIHGTKTKQKTTTFTIDSGQ----SVRLLRYSPSKRFLLSIASD--- 185 (673)
T ss_pred eeEEEEecCCcceeEEec----------cCCcEEEEecccCccccceecCCCC----eEEEeecccccceeeEeecc---
Confidence 567778888888888874 45789999988875 4555544332 36678999999988876332
Q ss_pred CCCCCCCCCCCCceeeccccccccchhhhhccCCccchhhhhhheeeEEEEEcCCCCceec---CCC-ceEEeeeeCCCC
Q 004475 111 DPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSLDGTAKDF---GTP-AVYTAVEPSPDQ 186 (751)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~G~~~~l---t~~-~~~~~~~~SpDG 186 (751)
.+.+-+||+.|.-..+ ..+ ....+++|||-.
T Consensus 186 ---------------------------------------------~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsn 220 (673)
T KOG4378|consen 186 ---------------------------------------------KGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSN 220 (673)
T ss_pred ---------------------------------------------CCeEEEEeccCCCcccchhhhccCCcCcceecCCc
Confidence 1467777887732211 112 455689999999
Q ss_pred ceEEEEEecCCcccccccCCCceeEEEEeCCCcee--eeeccCCCCCCCCCccCCccCCCceeeeecCCCceEEEEEecc
Q 004475 187 KYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLV--RELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQD 264 (751)
Q Consensus 187 ~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~--~~l~~~~~~~~~~~~~~~~~~~~~~~~~spdG~~~i~~~~~~~ 264 (751)
..|+++-. ....|++||...... +..+.+|+. .++|+++|-+ ++.-.
T Consensus 221 e~l~vsVG------------~Dkki~~yD~~s~~s~~~l~y~~Pls---------------tvaf~~~G~~-L~aG~--- 269 (673)
T KOG4378|consen 221 EALLVSVG------------YDKKINIYDIRSQASTDRLTYSHPLS---------------TVAFSECGTY-LCAGN--- 269 (673)
T ss_pred cceEEEec------------ccceEEEeecccccccceeeecCCcc---------------eeeecCCceE-EEeec---
Confidence 88877532 245799999875432 222333433 7899999987 55433
Q ss_pred CCCCccccCcccceeeccCCCCCCCCceEeEeeceeEE-EEEecC
Q 004475 265 RGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFS-VSWCDD 308 (751)
Q Consensus 265 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~-~~~spd 308 (751)
.+++|+.+|+- .+......+..+...+. ++|-|-
T Consensus 270 ---------s~G~~i~YD~R-~~k~Pv~v~sah~~sVt~vafq~s 304 (673)
T KOG4378|consen 270 ---------SKGELIAYDMR-STKAPVAVRSAHDASVTRVAFQPS 304 (673)
T ss_pred ---------CCceEEEEecc-cCCCCceEeeecccceeEEEeeec
Confidence 45799999984 33334455556666666 677553
No 328
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=97.67 E-value=0.00087 Score=65.36 Aligned_cols=137 Identities=15% Similarity=0.152 Sum_probs=87.7
Q ss_pred eeEEeecCCCCCCCCccc-ccCC-CCcccccceeecCCCCeEEEEEeecccccccCCceeEEEEEcCCCCeeeccCCCCc
Q 004475 6 GIGIHRLLPDDSLGPEKE-VHGY-PDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDI 83 (751)
Q Consensus 6 ~~~~~~~~~~~~~g~~~~-l~~~-~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~~~~~l~i~~~~~g~~~~lt~~~~~ 83 (751)
.||++|+.. -+... |... |+..+...-++|+.+.+|||=.. ...++|.++|+.+=+ +++.-..+
T Consensus 107 ~IyIydI~~----MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s--------~t~GdV~l~d~~nl~--~v~~I~aH 172 (391)
T KOG2110|consen 107 SIYIYDIKD----MKLLHTIETTPPNPKGLCALSPNNANCYLAYPGS--------TTSGDVVLFDTINLQ--PVNTINAH 172 (391)
T ss_pred cEEEEeccc----ceeehhhhccCCCccceEeeccCCCCceEEecCC--------CCCceEEEEEcccce--eeeEEEec
Confidence 599999977 55553 2222 23335666777788889999422 346889999976543 33222222
Q ss_pred cccceeeeeEEecCCcEEEEeecCCCCCCCCCCCCCCCCceeeccccccccchhhhhccCCccchhhhhhheeeEEEEEc
Q 004475 84 CLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGS 163 (751)
Q Consensus 84 ~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 163 (751)
. +.+..+++||||..||..++.+ .-|.+..
T Consensus 173 ~--~~lAalafs~~G~llATASeKG------------------------------------------------TVIRVf~ 202 (391)
T KOG2110|consen 173 K--GPLAALAFSPDGTLLATASEKG------------------------------------------------TVIRVFS 202 (391)
T ss_pred C--CceeEEEECCCCCEEEEeccCc------------------------------------------------eEEEEEE
Confidence 1 2467899999999999875421 3445555
Q ss_pred C-CC-Cceec---CCCceEEeeeeCCCCceEEEEEecCCcccccccCCCceeEEEEeCCCc
Q 004475 164 L-DG-TAKDF---GTPAVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGK 219 (751)
Q Consensus 164 ~-~G-~~~~l---t~~~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~ 219 (751)
+ +| ...++ +....+.+++||||+++|..++... .++++.++..
T Consensus 203 v~~G~kl~eFRRG~~~~~IySL~Fs~ds~~L~~sS~Te-------------TVHiFKL~~~ 250 (391)
T KOG2110|consen 203 VPEGQKLYEFRRGTYPVSIYSLSFSPDSQFLAASSNTE-------------TVHIFKLEKV 250 (391)
T ss_pred cCCccEeeeeeCCceeeEEEEEEECCCCCeEEEecCCC-------------eEEEEEeccc
Confidence 5 66 22233 3236678999999999998876542 4667766543
No 329
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=97.67 E-value=0.01 Score=59.27 Aligned_cols=181 Identities=11% Similarity=0.016 Sum_probs=99.4
Q ss_pred EEEEEcC--CCCceecCCC-ceEEeeeeCCCCceEEEEEecCCcccccccCCCceeEEEEeCCCce-eeeeccCCCCCCC
Q 004475 158 QLVLGSL--DGTAKDFGTP-AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKL-VRELCDLPPAEDI 233 (751)
Q Consensus 158 ~l~~~~~--~G~~~~lt~~-~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~-~~~l~~~~~~~~~ 233 (751)
.|+++.. ..+...+-.+ ..+......|.|+||+-.+++..+ -..|..++. ...+... .
T Consensus 284 ~i~vws~~~~s~~~~~~~h~~~V~~ls~h~tgeYllsAs~d~~w-------------~Fsd~~~g~~lt~vs~~-~---- 345 (506)
T KOG0289|consen 284 IIRVWSVPLSSEPTSSRPHEEPVTGLSLHPTGEYLLSASNDGTW-------------AFSDISSGSQLTVVSDE-T---- 345 (506)
T ss_pred eEEeeccccccCccccccccccceeeeeccCCcEEEEecCCceE-------------EEEEccCCcEEEEEeec-c----
Confidence 4555544 3333333333 667788899999999887766432 123333322 2221111 0
Q ss_pred CCccCCccCCCceeeeecCCCceEEEEEeccCCCCccccCcccceeeccCCCCCCCCceEeEeeceeEE-EEEecCCceE
Q 004475 234 PVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFS-VSWCDDSLAL 312 (751)
Q Consensus 234 ~~~~~~~~~~~~~~~~spdG~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~-~~~spdg~~l 312 (751)
....+...+|+|||. +|.... ..+.|-++++... ........+.+.+. ++||.+|-+|
T Consensus 346 ------s~v~~ts~~fHpDgL---ifgtgt----------~d~~vkiwdlks~--~~~a~Fpght~~vk~i~FsENGY~L 404 (506)
T KOG0289|consen 346 ------SDVEYTSAAFHPDGL---IFGTGT----------PDGVVKIWDLKSQ--TNVAKFPGHTGPVKAISFSENGYWL 404 (506)
T ss_pred ------ccceeEEeeEcCCce---EEeccC----------CCceEEEEEcCCc--cccccCCCCCCceeEEEeccCceEE
Confidence 011244779999995 332211 3467888888521 12233334555667 9999999999
Q ss_pred EEeeeecccceeEEEecCCCCCCcceeeeecccccccCCCCCCCeeeCCCCCEEEEeeeecCCcceEEEEccCCCCCCCC
Q 004475 313 VNETWYKTSQTRTWLVCPGSKDVAPRVLFDRVFENVYSDPGSPMMTRTSTGTNVIAKIKKENDEQIYILLNGRGFTPEGN 392 (751)
Q Consensus 313 ~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~spDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 392 (751)
+..++.. .+.+.|+... ...+.+.......+.. +.|.+.|++|+..+.
T Consensus 405 at~add~----~V~lwDLRKl-~n~kt~~l~~~~~v~s------~~fD~SGt~L~~~g~--------------------- 452 (506)
T KOG0289|consen 405 ATAADDG----SVKLWDLRKL-KNFKTIQLDEKKEVNS------LSFDQSGTYLGIAGS--------------------- 452 (506)
T ss_pred EEEecCC----eEEEEEehhh-cccceeecccccccee------EEEcCCCCeEEeecc---------------------
Confidence 9887432 2555555432 1222222222112222 778899999887752
Q ss_pred CceeEEEecCCCceeEE
Q 004475 393 IPFLDLFDINTGSKERI 409 (751)
Q Consensus 393 ~~~l~~~d~~~g~~~~l 409 (751)
...+|.++-++..++.+
T Consensus 453 ~l~Vy~~~k~~k~W~~~ 469 (506)
T KOG0289|consen 453 DLQVYICKKKTKSWTEI 469 (506)
T ss_pred eeEEEEEecccccceee
Confidence 23566677666666554
No 330
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=97.66 E-value=0.0024 Score=64.56 Aligned_cols=135 Identities=13% Similarity=0.120 Sum_probs=88.1
Q ss_pred eEEEEEcC-CC-CceecCCC--ceEEeeeeCCCCceEEEEEecCCcccccccCCCceeEEEEeCCCceeeeeccCCCCCC
Q 004475 157 AQLVLGSL-DG-TAKDFGTP--AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAED 232 (751)
Q Consensus 157 ~~l~~~~~-~G-~~~~lt~~--~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~ 232 (751)
+.|.+..+ ++ ....++.+ ..+.-+.+||-.|+++....+ ...+.+||+.+..+.-- ..-.
T Consensus 143 Gdiiih~~~t~~~tt~f~~~sgqsvRll~ys~skr~lL~~asd------------~G~VtlwDv~g~sp~~~--~~~~-- 206 (673)
T KOG4378|consen 143 GDIIIHGTKTKQKTTTFTIDSGQSVRLLRYSPSKRFLLSIASD------------KGAVTLWDVQGMSPIFH--ASEA-- 206 (673)
T ss_pred CcEEEEecccCccccceecCCCCeEEEeecccccceeeEeecc------------CCeEEEEeccCCCcccc--hhhh--
Confidence 46777777 55 55666655 445578899999999988765 34678999987643311 0001
Q ss_pred CCCccCCccCCCceeeeecCCCceEEEEEeccCCCCccccCcccceeeccCCCCCCCCceEeEeeceeEE-EEEecCCce
Q 004475 233 IPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFS-VSWCDDSLA 311 (751)
Q Consensus 233 ~~~~~~~~~~~~~~~~~spdG~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~-~~~spdg~~ 311 (751)
...-.+++.|||-...+|+-+ .....|+++|.. ......-......+. ++|+++|.+
T Consensus 207 -------HsAP~~gicfspsne~l~vsV------------G~Dkki~~yD~~---s~~s~~~l~y~~Plstvaf~~~G~~ 264 (673)
T KOG4378|consen 207 -------HSAPCRGICFSPSNEALLVSV------------GYDKKINIYDIR---SQASTDRLTYSHPLSTVAFSECGTY 264 (673)
T ss_pred -------ccCCcCcceecCCccceEEEe------------cccceEEEeecc---cccccceeeecCCcceeeecCCceE
Confidence 111145789999998744443 245689999984 222222223344566 899999999
Q ss_pred EEEeeeecccceeEEEecCCCC
Q 004475 312 LVNETWYKTSQTRTWLVCPGSK 333 (751)
Q Consensus 312 l~~~~~~~~~~~~l~~~~~~~~ 333 (751)
|+... ...+|+.+|+.+.
T Consensus 265 L~aG~----s~G~~i~YD~R~~ 282 (673)
T KOG4378|consen 265 LCAGN----SKGELIAYDMRST 282 (673)
T ss_pred EEeec----CCceEEEEecccC
Confidence 98765 3458999999875
No 331
>PF00975 Thioesterase: Thioesterase domain; InterPro: IPR001031 Thioesterase domains often occur integrated in or associated with peptide synthetases which are involved in the non-ribosomal synthesis of peptide antibiotics []. Thioesterases are required for the addition of the last amino acid to the peptide antibiotic, thereby forming a cyclic antibiotic. Next to the operons encoding these enzymes, in almost all cases, are genes that encode proteins that have similarity to the type II fatty acid thioesterases of vertebrates.; GO: 0016788 hydrolase activity, acting on ester bonds, 0009058 biosynthetic process; PDB: 2RON_A 2K2Q_B 3LCR_B 2HFJ_B 1MNQ_A 1MN6_B 1MNA_B 2HFK_B 2H7Y_B 2H7X_A ....
Probab=97.65 E-value=0.0012 Score=64.45 Aligned_cols=196 Identities=18% Similarity=0.096 Sum_probs=96.7
Q ss_pred cEEEEEcCCCCcCcccCCcccCCCCccCCCCchHHHHHHhCCeEEEEcCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHH
Q 004475 513 PCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGPSIPIIGEGDKLPNDRFVEQLVSSAEAAVEEV 592 (751)
Q Consensus 513 P~vv~~HGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~v~~~~~~~~~g~g~~~~~~~~~~~~~~d~~~~v~~l 592 (751)
+.|+++|++|. + ...+..++..+...++.|+.+ ...|.+.........+.++++..+.|
T Consensus 1 ~~lf~~p~~gG-----------~----~~~y~~la~~l~~~~~~v~~i---~~~~~~~~~~~~~si~~la~~y~~~I--- 59 (229)
T PF00975_consen 1 RPLFCFPPAGG-----------S----ASSYRPLARALPDDVIGVYGI---EYPGRGDDEPPPDSIEELASRYAEAI--- 59 (229)
T ss_dssp -EEEEESSTTC-----------S----GGGGHHHHHHHTTTEEEEEEE---CSTTSCTTSHEESSHHHHHHHHHHHH---
T ss_pred CeEEEEcCCcc-----------C----HHHHHHHHHhCCCCeEEEEEE---ecCCCCCCCCCCCCHHHHHHHHHHHh---
Confidence 35889998741 1 111223444444444777773 33444322233334555555444444
Q ss_pred HHcCCCCCCcEEEEEeChHHHHHHHHHHhC---CCceeEEEEccCCCCCCCCcc---Ccccc---------cccc-h--h
Q 004475 593 VRRGVADPSRIAVGGHSYGAFMTAHLLAHA---PHLFCCGIARSGSYNKTLTPF---GFQTE---------FRTL-W--E 654 (751)
Q Consensus 593 ~~~~~id~~~i~l~G~S~GG~~a~~~a~~~---p~~~~~~v~~~~~~d~~~~~~---~~~~~---------~~~~-~--~ 654 (751)
++... ..++.|+|||+||.+|..+|.+- ...+..++++.+......... ..... ...+ . .
T Consensus 60 ~~~~~--~gp~~L~G~S~Gg~lA~E~A~~Le~~G~~v~~l~liD~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (229)
T PF00975_consen 60 RARQP--EGPYVLAGWSFGGILAFEMARQLEEAGEEVSRLILIDSPPPSIKERPRSREPSDEQFIEELRRIGGTPDASLE 137 (229)
T ss_dssp HHHTS--SSSEEEEEETHHHHHHHHHHHHHHHTT-SESEEEEESCSSTTCHSCHHHHHCHHHHHHHHHHHHCHHHHHHCH
T ss_pred hhhCC--CCCeeehccCccHHHHHHHHHHHHHhhhccCceEEecCCCCCcccchhhhhhhHHHHHHHHHHhcCCchhhhc
Confidence 43321 23899999999999999998642 234777887775432111000 00000 0000 0 0
Q ss_pred hH--------------HHHHhcCcccccCCCCCCEEEEEcCCCCCCCCChHHHHHHHHHHHh-CCCcEEEEEeCCCCCcC
Q 004475 655 AT--------------NVYIEMSPITHANKIKKPILIIHGEVDDKVGLFPMQAERFFDALKG-HGALSRLVLLPFEHHVY 719 (751)
Q Consensus 655 ~~--------------~~~~~~~~~~~~~~~~~P~li~~G~~D~~vp~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~H~~ 719 (751)
.. ....... ........+|+++.....|+... .. ..+....+.. ....++++.++| +|..
T Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~--~~-~~~~~~~W~~~~~~~~~~~~v~G-~H~~ 212 (229)
T PF00975_consen 138 DEELLARLLRALRDDFQALENYS-IRPIDKQKVPITLFYALDDPLVS--MD-RLEEADRWWDYTSGDVEVHDVPG-DHFS 212 (229)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCS--TTSSSESSEEEEEEECSSSSSS--HH-CGGHHCHHHGCBSSSEEEEEESS-ETTG
T ss_pred CHHHHHHHHHHHHHHHHHHhhcc-CCccccCCCcEEEEecCCCcccc--ch-hhhhHHHHHHhcCCCcEEEEEcC-CCcE
Confidence 00 0001111 11111113578888888888765 22 1222332443 345688889987 6876
Q ss_pred CccccHHHHHHHHHHHH
Q 004475 720 AARENVMHVIWETDRWL 736 (751)
Q Consensus 720 ~~~~~~~~~~~~~~~fl 736 (751)
+..++..+..+.|.+||
T Consensus 213 ~l~~~~~~i~~~I~~~~ 229 (229)
T PF00975_consen 213 MLKPHVAEIAEKIAEWL 229 (229)
T ss_dssp HHSTTHHHHHHHHHHHH
T ss_pred ecchHHHHHHHHHhccC
Confidence 54345555555555554
No 332
>COG4947 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.62 E-value=0.00011 Score=63.24 Aligned_cols=123 Identities=22% Similarity=0.272 Sum_probs=81.9
Q ss_pred HHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEccCCCCCCCCccCcccccccchhhHHHHHh
Q 004475 582 VSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGSYNKTLTPFGFQTEFRTLWEATNVYIE 661 (751)
Q Consensus 582 ~~d~~~~v~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 661 (751)
++--.+.-+|+++... +.+..+.|-||||++|+.+..++|+.+.++|+++|.+|....--++... +.+.
T Consensus 84 ~~rH~AyerYv~eEal--pgs~~~sgcsmGayhA~nfvfrhP~lftkvialSGvYdardffg~yydd--------Dv~y- 152 (227)
T COG4947 84 AERHRAYERYVIEEAL--PGSTIVSGCSMGAYHAANFVFRHPHLFTKVIALSGVYDARDFFGGYYDD--------DVYY- 152 (227)
T ss_pred HHHHHHHHHHHHHhhc--CCCccccccchhhhhhhhhheeChhHhhhheeecceeeHHHhccccccC--------ceee-
Confidence 3334444466766532 3567889999999999999999999999999999998843211000000 0111
Q ss_pred cCcccccCCCC----------CCEEEEEcCCCCCCCCChHHHHHHHHHHHhCCCcEEEEEeCCCCCcC
Q 004475 662 MSPITHANKIK----------KPILIIHGEVDDKVGLFPMQAERFFDALKGHGALSRLVLLPFEHHVY 719 (751)
Q Consensus 662 ~~~~~~~~~~~----------~P~li~~G~~D~~vp~~~~~~~~~~~~l~~~~~~~~~~~~~~~~H~~ 719 (751)
++|..++..+. .-+.+-.|..|+.. .+.+++.+.|..+..+..+.+..+..|.+
T Consensus 153 nsP~dylpg~~dp~~l~rlr~~~~vfc~G~e~~~L----~~~~~L~~~l~dKqipaw~~~WggvaHdw 216 (227)
T COG4947 153 NSPSDYLPGLADPFRLERLRRIDMVFCIGDEDPFL----DNNQHLSRLLSDKQIPAWMHVWGGVAHDW 216 (227)
T ss_pred cChhhhccCCcChHHHHHHhhccEEEEecCccccc----cchHHHHHHhccccccHHHHHhccccccc
Confidence 33444333332 34777888888874 45667888888887888888887777764
No 333
>PF11144 DUF2920: Protein of unknown function (DUF2920); InterPro: IPR022605 This bacterial family of proteins has no known function.
Probab=97.61 E-value=0.0019 Score=65.50 Aligned_cols=130 Identities=22% Similarity=0.169 Sum_probs=86.2
Q ss_pred HHHHHHHHHHHHHcCC-C-CCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEccCCCCCCCCc-cCc-------------
Q 004475 582 VSSAEAAVEEVVRRGV-A-DPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGSYNKTLTP-FGF------------- 645 (751)
Q Consensus 582 ~~d~~~~v~~l~~~~~-i-d~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~~d~~~~~-~~~------------- 645 (751)
+-|...|+.++.++-. . +.-++.++|+|.||++|.+++.-.|..+.+++=.++........ .+.
T Consensus 163 AiD~INAl~~l~k~~~~~~~~lp~I~~G~s~G~yla~l~~k~aP~~~~~~iDns~~~~p~l~~I~Gre~~~~~y~~~~~~ 242 (403)
T PF11144_consen 163 AIDIINALLDLKKIFPKNGGGLPKIYIGSSHGGYLAHLCAKIAPWLFDGVIDNSSYALPPLRYIFGREIDFMKYICSGEF 242 (403)
T ss_pred HHHHHHHHHHHHHhhhcccCCCcEEEEecCcHHHHHHHHHhhCccceeEEEecCccccchhheeeeeecCcccccccccc
Confidence 5788888888887622 2 23489999999999999999999999999999877754321100 000
Q ss_pred --------ccccccchhhH---------HHHHhcCc--cccc---CCC--CCCEEEEEcCCCCCCCCChHHHHHHHHHHH
Q 004475 646 --------QTEFRTLWEAT---------NVYIEMSP--ITHA---NKI--KKPILIIHGEVDDKVGLFPMQAERFFDALK 701 (751)
Q Consensus 646 --------~~~~~~~~~~~---------~~~~~~~~--~~~~---~~~--~~P~li~~G~~D~~vp~~~~~~~~~~~~l~ 701 (751)
.....+.|... +.+.-... ..++ .+. ++-....|+..|..+| ...-.++++.++
T Consensus 243 ~~~~~~~i~~~~Kt~Wt~n~~S~~~Fs~~~~~IR~iLn~~HL~iqs~~n~~~~yvsYHs~~D~~~p--~~~K~~l~~~l~ 320 (403)
T PF11144_consen 243 FNFKNIRIYCFDKTFWTRNKNSPYYFSKARYIIRSILNPDHLKIQSNYNKKIIYVSYHSIKDDLAP--AEDKEELYEILK 320 (403)
T ss_pred cccCCEEEEEEeccccccCCCCccccChHHHHHHHhcChHHHHHHHhcccceEEEEEeccCCCCCC--HHHHHHHHHHHH
Confidence 00113344321 11100000 1111 111 3446679999999999 999999999999
Q ss_pred hCCCcEEEEEeC
Q 004475 702 GHGALSRLVLLP 713 (751)
Q Consensus 702 ~~~~~~~~~~~~ 713 (751)
+.|-+++++++.
T Consensus 321 ~lgfda~l~lIk 332 (403)
T PF11144_consen 321 NLGFDATLHLIK 332 (403)
T ss_pred HcCCCeEEEEec
Confidence 999999999883
No 334
>PF05705 DUF829: Eukaryotic protein of unknown function (DUF829); InterPro: IPR008547 This signature identifies Transmembrane protein 53, that have no known function but are predicted to be integral membrane proteins.
Probab=97.60 E-value=0.0013 Score=64.50 Aligned_cols=65 Identities=15% Similarity=0.087 Sum_probs=59.3
Q ss_pred CCCCCEEEEEcCCCCCCCCChHHHHHHHHHHHhCCCcEEEEEeCCCCCcCCccccHHHHHHHHHHHH
Q 004475 670 KIKKPILIIHGEVDDKVGLFPMQAERFFDALKGHGALSRLVLLPFEHHVYAARENVMHVIWETDRWL 736 (751)
Q Consensus 670 ~~~~P~li~~G~~D~~vp~~~~~~~~~~~~l~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~fl 736 (751)
...+|-|.+.++.|.+++ ....+++.+..++.|.+++...+.+..|.-+.....+++.+.+.+|+
T Consensus 176 ~~~~p~lylYS~~D~l~~--~~~ve~~~~~~~~~G~~V~~~~f~~S~HV~H~r~~p~~Y~~~v~~fw 240 (240)
T PF05705_consen 176 PSRCPRLYLYSKADPLIP--WRDVEEHAEEARRKGWDVRAEKFEDSPHVAHLRKHPDRYWRAVDEFW 240 (240)
T ss_pred CCCCCeEEecCCCCcCcC--HHHHHHHHHHHHHcCCeEEEecCCCCchhhhcccCHHHHHHHHHhhC
Confidence 446899999999999999 99999999999999999999999999999988888899999888774
No 335
>TIGR02171 Fb_sc_TIGR02171 Fibrobacter succinogenes paralogous family TIGR02171. This model describes a paralogous family of the rumen bacterium Fibrobacter succinogenes. Eleven members are found in Fibrobacter succinogenes S85, averaging over 900 amino acids in length. More than half are predicted lipoproteins. The function is unknown.
Probab=97.60 E-value=0.0022 Score=71.14 Aligned_cols=90 Identities=18% Similarity=0.284 Sum_probs=56.9
Q ss_pred eeEEeecCCCCCCCCcccccCCCCcccccceeecCCCCeEEE-EEeecccccccCCceeEEEEEcCCCCeeeccCCCCcc
Q 004475 6 GIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAF-SVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDIC 84 (751)
Q Consensus 6 ~~~~~~~~~~~~~g~~~~l~~~~~~~~~~~p~~SPDG~~iaf-~~~~~~~~~~~~~~~~l~i~~~~~g~~~~lt~~~~~~ 84 (751)
+|.+.|.++ +..+.+. +.....+.+|+|||||++||| ++-. .-.+...||+.++.+....++--.-+
T Consensus 330 ~L~~~D~dG----~n~~~ve-~~~~~~i~sP~~SPDG~~vAY~ts~e-----~~~g~s~vYv~~L~t~~~~~vkl~ve-- 397 (912)
T TIGR02171 330 NLAYIDYTK----GASRAVE-IEDTISVYHPDISPDGKKVAFCTGIE-----GLPGKSSVYVRNLNASGSGLVKLPVE-- 397 (912)
T ss_pred eEEEEecCC----CCceEEE-ecCCCceecCcCCCCCCEEEEEEeec-----CCCCCceEEEEehhccCCCceEeecc--
Confidence 788999988 8888772 133446899999999999999 5431 00257889999998754333310111
Q ss_pred ccceeeeeEE--ecCCc-EEEEeecCCCC
Q 004475 85 LNAVFGSFVW--VNNST-LLIFTIPSSRR 110 (751)
Q Consensus 85 ~~~~~~~~~w--spDg~-~l~~~~~~~~~ 110 (751)
+ ..-|+| ..+|. .|+|.+..+..
T Consensus 398 -~--aaiprwrv~e~gdt~ivyv~~a~nn 423 (912)
T TIGR02171 398 -N--AAIPRWRVLENGDTVIVYVSDASNN 423 (912)
T ss_pred -c--ccccceEecCCCCeEEEEEcCCCCC
Confidence 1 223456 46664 46676554433
No 336
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=97.60 E-value=0.0019 Score=67.65 Aligned_cols=58 Identities=14% Similarity=0.247 Sum_probs=43.4
Q ss_pred cccceeecCCCCeEEEEEeecccccccCCceeEEEEEcCCCCeeeccCCCCccccceeeeeEEecCCcEEEEe
Q 004475 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFT 104 (751)
Q Consensus 32 ~~~~p~~SPDG~~iaf~~~~~~~~~~~~~~~~l~i~~~~~g~~~~lt~~~~~~~~~~~~~~~wspDg~~l~~~ 104 (751)
.+...+|-|||+.|... .+..|+++|+..|..-+-..+... .+..++||-||++.+..
T Consensus 14 ci~d~afkPDGsqL~lA-----------Ag~rlliyD~ndG~llqtLKgHKD----tVycVAys~dGkrFASG 71 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILA-----------AGSRLLVYDTSDGTLLQPLKGHKD----TVYCVAYAKDGKRFASG 71 (1081)
T ss_pred chheeEECCCCceEEEe-----------cCCEEEEEeCCCcccccccccccc----eEEEEEEccCCceeccC
Confidence 57889999999999884 447899999877654333333221 47789999999987755
No 337
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=97.60 E-value=0.0024 Score=67.23 Aligned_cols=185 Identities=14% Similarity=0.113 Sum_probs=108.7
Q ss_pred cceeEEeecCCCCCCC--CcccccC--CCCcccccceeecCCCCeEEEEEeecccccccCCceeEEEEEcCCCC-eeecc
Q 004475 4 FTGIGIHRLLPDDSLG--PEKEVHG--YPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGE-AKPLF 78 (751)
Q Consensus 4 ~~~~~~~~~~~~~~~g--~~~~l~~--~~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~~~~~l~i~~~~~g~-~~~lt 78 (751)
.+.+-+|.+.+....| ....|-. +++...+...++||||++||+.. -....||.+..+... .+.+-
T Consensus 352 ~h~v~lwrlGS~~~~g~~~~~~Llkl~~k~~~nIs~~aiSPdg~~Ia~st---------~~~~~iy~L~~~~~vk~~~v~ 422 (691)
T KOG2048|consen 352 AHGVDLWRLGSVILQGEYNYIHLLKLFTKEKENISCAAISPDGNLIAIST---------VSRTKIYRLQPDPNVKVINVD 422 (691)
T ss_pred cccccceeccCcccccccChhhheeeecCCccceeeeccCCCCCEEEEee---------ccceEEEEeccCcceeEEEec
Confidence 4456667776622222 1122221 34555788999999999999954 233566666655422 22221
Q ss_pred CCCCccccceeeeeEEecCCcEEEEeecCCCCCCCCCCCCCCCCceeeccccccccchhhhhccCCccchhhhhhheeeE
Q 004475 79 ESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQ 158 (751)
Q Consensus 79 ~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (751)
..+.. .-......++-|+..|++.+.. ..+
T Consensus 423 ~~~~~--~~~a~~i~ftid~~k~~~~s~~------------------------------------------------~~~ 452 (691)
T KOG2048|consen 423 DVPLA--LLDASAISFTIDKNKLFLVSKN------------------------------------------------IFS 452 (691)
T ss_pred cchhh--hccceeeEEEecCceEEEEecc------------------------------------------------cce
Confidence 11111 1123466788898888777521 035
Q ss_pred EEEEcCCC----CceecCCC---ceEEeeeeCCCCceEEEEEecCCcccccccCCCceeEEEEeCCCceeeeeccCCCCC
Q 004475 159 LVLGSLDG----TAKDFGTP---AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAE 231 (751)
Q Consensus 159 l~~~~~~G----~~~~lt~~---~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~ 231 (751)
|..+++++ +...++.. ..+..+.-||||++|++.... ..|++|++++.+...+....
T Consensus 453 le~~el~~ps~kel~~~~~~~~~~~I~~l~~SsdG~yiaa~~t~-------------g~I~v~nl~~~~~~~l~~rl--- 516 (691)
T KOG2048|consen 453 LEEFELETPSFKELKSIQSQAKCPSISRLVVSSDGNYIAAISTR-------------GQIFVYNLETLESHLLKVRL--- 516 (691)
T ss_pred eEEEEecCcchhhhhccccccCCCcceeEEEcCCCCEEEEEecc-------------ceEEEEEcccceeecchhcc---
Confidence 55565522 22223222 677889999999999998643 47999999998877653211
Q ss_pred CCCCccCCccCCCceeeeecCCCceEEEEEeccCCCCccccCcccceeeccCC
Q 004475 232 DIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAE 284 (751)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~spdG~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~ 284 (751)
+..++..+++|.-+..|+.+. ..+++|-++++
T Consensus 517 ---------n~~vTa~~~~~~~~~~lvvat------------s~nQv~efdi~ 548 (691)
T KOG2048|consen 517 ---------NIDVTAAAFSPFVRNRLVVAT------------SNNQVFEFDIE 548 (691)
T ss_pred ---------CcceeeeeccccccCcEEEEe------------cCCeEEEEecc
Confidence 122446788865554366643 23578887774
No 338
>PF03096 Ndr: Ndr family; InterPro: IPR004142 This family consists of proteins from different gene families: Ndr1/RTP/Drg1, Ndr2, and Ndr3. Their similarity was previously noted []. The precise molecular and cellular function of members of this family is still unknown, yet they are known to be involved in cellular differentiation events. The Ndr1 group was the first to be discovered. Their expression is repressed by the proto-oncogenes N-myc and c-myc, and in line with this observation, Ndr1 protein expression is down-regulated in neoplastic cells, and is reactivated when differentiation is induced by chemicals such as retinoic acid. Ndr2 and Ndr3 expression is not under the control of N-myc or c-myc. Ndr1 expression is also activated by several chemicals: tunicamycin and homocysteine induce Ndr1 in human umbilical endothelial cells; nickel induces Ndr1 in several cell types. Members of this family are found in wide variety of multicellular eukaryotes, including an Ndr1 type protein in Helianthus annuus (Common sunflower), known as Sf21. Interestingly, the highest scoring matches in the noise are all alpha/beta hydrolases (IPR000073 from INTERPRO), suggesting that this family may have an enzymatic function.; PDB: 2QMQ_A 2XMR_B 2XMQ_B 2XMS_A.
Probab=97.59 E-value=0.0041 Score=60.36 Aligned_cols=216 Identities=14% Similarity=0.148 Sum_probs=113.1
Q ss_pred eEEEEEEcCCCCCCCCCCCccEEEEEcCCCCcCcccCCcccCCCCccCCCCchHHHHHHhCCeEEEEcCCCCCCCCCCCC
Q 004475 493 PLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGPSIPIIGEGDKL 572 (751)
Q Consensus 493 ~i~~~~~~P~~~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~v~~~~~~~~~g~g~~~ 572 (751)
.+.+.++-..+ +++|++|-+|--|-..... |...............|.++-++.+ +...|...
T Consensus 10 ~v~V~v~G~~~------~~kp~ilT~HDvGlNh~sc----------F~~ff~~~~m~~i~~~f~i~Hi~aP-Gqe~ga~~ 72 (283)
T PF03096_consen 10 SVHVTVQGDPK------GNKPAILTYHDVGLNHKSC----------FQGFFNFEDMQEILQNFCIYHIDAP-GQEEGAAT 72 (283)
T ss_dssp EEEEEEESS--------TTS-EEEEE--TT--HHHH----------CHHHHCSHHHHHHHTTSEEEEEE-T-TTSTT---
T ss_pred EEEEEEEecCC------CCCceEEEeccccccchHH----------HHHHhcchhHHHHhhceEEEEEeCC-CCCCCccc
Confidence 67777775432 2479999999854221110 2222222334445577888774332 22223222
Q ss_pred CCchh----HHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEccCCCCCCC--------
Q 004475 573 PNDRF----VEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGSYNKTL-------- 640 (751)
Q Consensus 573 ~~~~~----~~~~~~d~~~~v~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~~d~~~-------- 640 (751)
.+..+ .+++.+++..+++++. -+.++.+|--+||++-.+.|..+|+++.++|++++......
T Consensus 73 ~p~~y~yPsmd~LAe~l~~Vl~~f~------lk~vIg~GvGAGAnIL~rfAl~~p~~V~GLiLvn~~~~~~gw~Ew~~~K 146 (283)
T PF03096_consen 73 LPEGYQYPSMDQLAEMLPEVLDHFG------LKSVIGFGVGAGANILARFALKHPERVLGLILVNPTCTAAGWMEWFYQK 146 (283)
T ss_dssp --TT-----HHHHHCTHHHHHHHHT---------EEEEEETHHHHHHHHHHHHSGGGEEEEEEES---S---HHHHHHHH
T ss_pred ccccccccCHHHHHHHHHHHHHhCC------ccEEEEEeeccchhhhhhccccCccceeEEEEEecCCCCccHHHHHHHH
Confidence 22232 3455566666666652 25699999999999999999999999999999998643110
Q ss_pred ------CccCccccc--ccch---------hh----------------H-------HHHHhcC-cccccCCCCCCEEEEE
Q 004475 641 ------TPFGFQTEF--RTLW---------EA----------------T-------NVYIEMS-PITHANKIKKPILIIH 679 (751)
Q Consensus 641 ------~~~~~~~~~--~~~~---------~~----------------~-------~~~~~~~-~~~~~~~~~~P~li~~ 679 (751)
...++.... ...| .. + ..|.... .....+...||+|++.
T Consensus 147 ~~~~~L~~~gmt~~~~d~Ll~h~Fg~~~~~~n~Dlv~~yr~~l~~~~Np~Nl~~f~~sy~~R~DL~~~~~~~~c~vLlvv 226 (283)
T PF03096_consen 147 LSSWLLYSYGMTSSVKDYLLWHYFGKEEEENNSDLVQTYRQHLDERINPKNLALFLNSYNSRTDLSIERPSLGCPVLLVV 226 (283)
T ss_dssp HH-------CTTS-HHHHHHHHHS-HHHHHCT-HHHHHHHHHHHT-TTHHHHHHHHHHHHT-----SECTTCCS-EEEEE
T ss_pred HhcccccccccccchHHhhhhcccccccccccHHHHHHHHHHHhcCCCHHHHHHHHHHHhccccchhhcCCCCCCeEEEE
Confidence 000100000 0000 00 0 0111111 1112345679999999
Q ss_pred cCCCCCCCCChHHHHHHHHHHHhCCCcEEEEEeCCCCCcCCccccHHHHHHHHHHHHHH
Q 004475 680 GEVDDKVGLFPMQAERFFDALKGHGALSRLVLLPFEHHVYAARENVMHVIWETDRWLQK 738 (751)
Q Consensus 680 G~~D~~vp~~~~~~~~~~~~l~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~fl~~ 738 (751)
|..-+. ...+.++..+|.. .+..+..++++|-... .+.+....+.+.-|+..
T Consensus 227 G~~Sp~----~~~vv~~ns~Ldp--~~ttllkv~dcGglV~-eEqP~klaea~~lFlQG 278 (283)
T PF03096_consen 227 GDNSPH----VDDVVEMNSKLDP--TKTTLLKVADCGGLVL-EEQPGKLAEAFKLFLQG 278 (283)
T ss_dssp ETTSTT----HHHHHHHHHHS-C--CCEEEEEETT-TT-HH-HH-HHHHHHHHHHHHHH
T ss_pred ecCCcc----hhhHHHHHhhcCc--ccceEEEecccCCccc-ccCcHHHHHHHHHHHcc
Confidence 999987 5777888888854 4688999999866554 55566666676666653
No 339
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=97.59 E-value=0.0057 Score=56.03 Aligned_cols=179 Identities=14% Similarity=0.091 Sum_probs=92.2
Q ss_pred eEEEEEcC-CCC-ceecCCC-ceEEeeeeCCCCceEEEEEecCCcccccccCCCceeEEEEeCCCceeeeeccCCCCCCC
Q 004475 157 AQLVLGSL-DGT-AKDFGTP-AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDI 233 (751)
Q Consensus 157 ~~l~~~~~-~G~-~~~lt~~-~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~ 233 (751)
..|.+|+. .|. ++....+ ..+.+++.|-|...++--.. ...+++||+++++..+-.
T Consensus 39 rtvrLWNp~rg~liktYsghG~EVlD~~~s~Dnskf~s~Gg-------------Dk~v~vwDV~TGkv~Rr~-------- 97 (307)
T KOG0316|consen 39 RTVRLWNPLRGALIKTYSGHGHEVLDAALSSDNSKFASCGG-------------DKAVQVWDVNTGKVDRRF-------- 97 (307)
T ss_pred ceEEeecccccceeeeecCCCceeeeccccccccccccCCC-------------CceEEEEEcccCeeeeec--------
Confidence 35666777 663 3444434 66778899999988765432 235889999987654321
Q ss_pred CCccCCccCCCceeeeecCCCceEEEEEeccCCCCccccCcccceeeccCCCCCCCCceEeEe-eceeEEEEEecCCceE
Q 004475 234 PVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHK-LDLRFSVSWCDDSLAL 312 (751)
Q Consensus 234 ~~~~~~~~~~~~~~~~spdG~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~-~~~~~~~~~spdg~~l 312 (751)
.....++..+.|+.+.. +++... -...+.++|.-.. ..+|.++.. ....+. +..-.+..|
T Consensus 98 ----rgH~aqVNtV~fNeesS--Vv~Sgs-----------fD~s~r~wDCRS~-s~ePiQildea~D~V~-Si~v~~heI 158 (307)
T KOG0316|consen 98 ----RGHLAQVNTVRFNEESS--VVASGS-----------FDSSVRLWDCRSR-SFEPIQILDEAKDGVS-SIDVAEHEI 158 (307)
T ss_pred ----ccccceeeEEEecCcce--EEEecc-----------ccceeEEEEcccC-CCCccchhhhhcCcee-EEEecccEE
Confidence 22223344677777765 444221 2235666665311 112222221 111122 222223334
Q ss_pred EEeeeecccceeEEEecCCCCCCcceeeeecccccccCCCCCCCeeeCCCCCEEEEeeeecCCcceEEEEccCCCCCCCC
Q 004475 313 VNETWYKTSQTRTWLVCPGSKDVAPRVLFDRVFENVYSDPGSPMMTRTSTGTNVIAKIKKENDEQIYILLNGRGFTPEGN 392 (751)
Q Consensus 313 ~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~spDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 392 (751)
+..+. .+..+.| ++..+ +...+--.+.+.. .+||+||+-++..+.+.
T Consensus 159 vaGS~--DGtvRty--diR~G----~l~sDy~g~pit~------vs~s~d~nc~La~~l~s------------------- 205 (307)
T KOG0316|consen 159 VAGSV--DGTVRTY--DIRKG----TLSSDYFGHPITS------VSFSKDGNCSLASSLDS------------------- 205 (307)
T ss_pred Eeecc--CCcEEEE--Eeecc----eeehhhcCCccee------EEecCCCCEEEEeeccc-------------------
Confidence 43331 1222333 33332 1111111111111 78999999888888543
Q ss_pred CceeEEEecCCCceeEEe
Q 004475 393 IPFLDLFDINTGSKERIW 410 (751)
Q Consensus 393 ~~~l~~~d~~~g~~~~l~ 410 (751)
.|+++|.+||++-...
T Consensus 206 --tlrLlDk~tGklL~sY 221 (307)
T KOG0316|consen 206 --TLRLLDKETGKLLKSY 221 (307)
T ss_pred --eeeecccchhHHHHHh
Confidence 7899999999875443
No 340
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=97.58 E-value=0.034 Score=64.85 Aligned_cols=84 Identities=14% Similarity=0.249 Sum_probs=53.3
Q ss_pred eEEEEEcCCCCceecCCC--ceEEeeeeCCCCceEEEEEecCCcccccccCCCceeEEEEeCCCceeeeeccCCCCCCCC
Q 004475 157 AQLVLGSLDGTAKDFGTP--AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIP 234 (751)
Q Consensus 157 ~~l~~~~~~G~~~~lt~~--~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~ 234 (751)
..+.+++-+|+..-..++ +--..++|-|.|..|+.+..... ..++..+..+|-+.....-.
T Consensus 237 R~iRVy~ReG~L~stSE~v~gLe~~l~WrPsG~lIA~~q~~~~----------~~~VvFfErNGLrhgeF~l~------- 299 (928)
T PF04762_consen 237 RVIRVYSREGELQSTSEPVDGLEGALSWRPSGNLIASSQRLPD----------RHDVVFFERNGLRHGEFTLR------- 299 (928)
T ss_pred eEEEEECCCceEEeccccCCCccCCccCCCCCCEEEEEEEcCC----------CcEEEEEecCCcEeeeEecC-------
Confidence 567777778876666555 33458899999999998765321 24677777777544332111
Q ss_pred CccCCccCCCceeeeecCCCceEEE
Q 004475 235 VCYNSVREGMRSISWRADKPSTLYW 259 (751)
Q Consensus 235 ~~~~~~~~~~~~~~~spdG~~~i~~ 259 (751)
+......+..+.|++|+.-|.+.
T Consensus 300 --~~~~~~~v~~l~Wn~ds~iLAv~ 322 (928)
T PF04762_consen 300 --FDPEEEKVIELAWNSDSEILAVW 322 (928)
T ss_pred --CCCCCceeeEEEECCCCCEEEEE
Confidence 11122335689999999974444
No 341
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=97.57 E-value=0.003 Score=68.34 Aligned_cols=201 Identities=15% Similarity=0.159 Sum_probs=109.2
Q ss_pred cccceeecCCCCeEEEEEeecccccccCCceeEEEEEcCCCCeeeccCCCCccccceeeeeEEec-CCcEEEEeecCCCC
Q 004475 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVN-NSTLLIFTIPSSRR 110 (751)
Q Consensus 32 ~~~~p~~SPDG~~iaf~~~~~~~~~~~~~~~~l~i~~~~~g~~~~lt~~~~~~~~~~~~~~~wsp-Dg~~l~~~~~~~~~ 110 (751)
.+...+||-++ .|+-.++ +. .+.+|++...+--.+..+.. .+..++|.| |.++.+-.+-+
T Consensus 371 DILDlSWSKn~-fLLSSSM--------DK--TVRLWh~~~~~CL~~F~Hnd-----fVTcVaFnPvDDryFiSGSLD--- 431 (712)
T KOG0283|consen 371 DILDLSWSKNN-FLLSSSM--------DK--TVRLWHPGRKECLKVFSHND-----FVTCVAFNPVDDRYFISGSLD--- 431 (712)
T ss_pred hheecccccCC-eeEeccc--------cc--cEEeecCCCcceeeEEecCC-----eeEEEEecccCCCcEeecccc---
Confidence 47789999987 4444332 33 44444555555555544444 478899999 45555444322
Q ss_pred CCCCCCCCCCCCceeeccccccccchhhhhccCCccchhhhhhheeeEEEEEcC-CCCceecCCC-ceEEeeeeCCCCce
Q 004475 111 DPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DGTAKDFGTP-AVYTAVEPSPDQKY 188 (751)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~G~~~~lt~~-~~~~~~~~SpDG~~ 188 (751)
..+.+|++ +-++...++- ..+..++|+|||+.
T Consensus 432 ----------------------------------------------~KvRiWsI~d~~Vv~W~Dl~~lITAvcy~PdGk~ 465 (712)
T KOG0283|consen 432 ----------------------------------------------GKVRLWSISDKKVVDWNDLRDLITAVCYSPDGKG 465 (712)
T ss_pred ----------------------------------------------cceEEeecCcCeeEeehhhhhhheeEEeccCCce
Confidence 34555666 4466556655 67789999999999
Q ss_pred EEEEEecCCcccccccCCCceeEEEEeCCCceeeeeccCCCCCCCCCccCCccCCCceeeeecCCCceEEEEEeccCCCC
Q 004475 189 VLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDA 268 (751)
Q Consensus 189 i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~spdG~~~i~~~~~~~~~~~ 268 (751)
.++-.... ....|+..+-+.+.-.........- ....-+.++.+.|-...-|++++
T Consensus 466 avIGt~~G-------------~C~fY~t~~lk~~~~~~I~~~~~Kk----~~~~rITG~Q~~p~~~~~vLVTS------- 521 (712)
T KOG0283|consen 466 AVIGTFNG-------------YCRFYDTEGLKLVSDFHIRLHNKKK----KQGKRITGLQFFPGDPDEVLVTS------- 521 (712)
T ss_pred EEEEEecc-------------EEEEEEccCCeEEEeeeEeeccCcc----ccCceeeeeEecCCCCCeEEEec-------
Confidence 98865543 3445555544332211111000000 00012446666654443255554
Q ss_pred ccccCcccceeeccCCCCCCCCceEeEe---eceeEEEEEecCCceEEEeeeecccceeEEEecCCC
Q 004475 269 NVEVSPRDIIYTQPAEPAEGEKPEILHK---LDLRFSVSWCDDSLALVNETWYKTSQTRTWLVCPGS 332 (751)
Q Consensus 269 ~~~~~~~~~l~~~~~~~~~~~~~~~l~~---~~~~~~~~~spdg~~l~~~~~~~~~~~~l~~~~~~~ 332 (751)
...+|.++|..+ ......+.. ...++..+|+.||++|+.+++ ...+|+.+.+.
T Consensus 522 -----nDSrIRI~d~~~--~~lv~KfKG~~n~~SQ~~Asfs~Dgk~IVs~se----Ds~VYiW~~~~ 577 (712)
T KOG0283|consen 522 -----NDSRIRIYDGRD--KDLVHKFKGFRNTSSQISASFSSDGKHIVSASE----DSWVYIWKNDS 577 (712)
T ss_pred -----CCCceEEEeccc--hhhhhhhcccccCCcceeeeEccCCCEEEEeec----CceEEEEeCCC
Confidence 335788887631 111112211 111222789999999999882 24566666544
No 342
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=97.52 E-value=0.097 Score=50.33 Aligned_cols=121 Identities=18% Similarity=0.243 Sum_probs=80.3
Q ss_pred CCcccccCCCCcccccceeecCCCCeEEEEEeecccccccCCceeEEEEEcCCCCeeeccCCCCccccceeeeeEEecCC
Q 004475 19 GPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNS 98 (751)
Q Consensus 19 g~~~~l~~~~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~~~~~l~i~~~~~g~~~~lt~~~~~~~~~~~~~~~wspDg 98 (751)
....+|.+.|.. .++...|||.+..|+..+. + +.|.+++....+.++...... .+-.++|.++.
T Consensus 3 ~~~~~l~npP~d-~IS~v~f~~~~~~LLvssW--------D--gslrlYdv~~~~l~~~~~~~~-----plL~c~F~d~~ 66 (323)
T KOG1036|consen 3 PNEFELENPPED-GISSVKFSPSSSDLLVSSW--------D--GSLRLYDVPANSLKLKFKHGA-----PLLDCAFADES 66 (323)
T ss_pred ccccccCCCChh-ceeeEEEcCcCCcEEEEec--------c--CcEEEEeccchhhhhheecCC-----ceeeeeccCCc
Confidence 345566665555 5899999999999988763 3 455555655666666654443 25677888766
Q ss_pred cEEEEeecCCCCCCCCCCCCCCCCceeeccccccccchhhhhccCCccchhhhhhheeeEEEEEcC-CCCceecCCC-ce
Q 004475 99 TLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DGTAKDFGTP-AV 176 (751)
Q Consensus 99 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~G~~~~lt~~-~~ 176 (751)
+ +++..-+ .+|.++|+ +|+..++..+ ..
T Consensus 67 ~-~~~G~~d-------------------------------------------------g~vr~~Dln~~~~~~igth~~~ 96 (323)
T KOG1036|consen 67 T-IVTGGLD-------------------------------------------------GQVRRYDLNTGNEDQIGTHDEG 96 (323)
T ss_pred e-EEEeccC-------------------------------------------------ceEEEEEecCCcceeeccCCCc
Confidence 4 5554211 58899999 6677777666 77
Q ss_pred EEeeeeCCCCceEEEEEecCCcccccccCCCceeEEEEeCCC
Q 004475 177 YTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDG 218 (751)
Q Consensus 177 ~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~ 218 (751)
+..+..++--..++. +.|...|-+||+..
T Consensus 97 i~ci~~~~~~~~vIs-------------gsWD~~ik~wD~R~ 125 (323)
T KOG1036|consen 97 IRCIEYSYEVGCVIS-------------GSWDKTIKFWDPRN 125 (323)
T ss_pred eEEEEeeccCCeEEE-------------cccCccEEEEeccc
Confidence 888888864333332 23456788999876
No 343
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=97.52 E-value=0.0077 Score=57.84 Aligned_cols=218 Identities=7% Similarity=0.023 Sum_probs=113.0
Q ss_pred ceEEeeeeCCCCceEEEEEecCCcccccccCCCceeEEEEeCCCcee-eeeccCCCCCCCCCccCCccCCCceeeeecCC
Q 004475 175 AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLV-RELCDLPPAEDIPVCYNSVREGMRSISWRADK 253 (751)
Q Consensus 175 ~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~spdG 253 (751)
..+..-+|++|+..|++.... .++.+|...+.+. +..-. +......+..+.|+|..
T Consensus 11 ~pitchAwn~drt~iAv~~~~-------------~evhiy~~~~~~~w~~~ht----------ls~Hd~~vtgvdWap~s 67 (361)
T KOG1523|consen 11 EPITCHAWNSDRTQIAVSPNN-------------HEVHIYSMLGADLWEPAHT----------LSEHDKIVTGVDWAPKS 67 (361)
T ss_pred CceeeeeecCCCceEEeccCC-------------ceEEEEEecCCCCceecee----------hhhhCcceeEEeecCCC
Confidence 456678999999999998554 3566777665542 21100 01111234578999999
Q ss_pred CceEEEEEeccCCCCccccCcccceeeccC-CCCCCCC---ceEeEeeceeEE-EEEecCCceEEEeeeecccceeEEEe
Q 004475 254 PSTLYWVEAQDRGDANVEVSPRDIIYTQPA-EPAEGEK---PEILHKLDLRFS-VSWCDDSLALVNETWYKTSQTRTWLV 328 (751)
Q Consensus 254 ~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~---~~~l~~~~~~~~-~~~spdg~~l~~~~~~~~~~~~l~~~ 328 (751)
++ |+-++. ...-|++.. + ++. .-.|...+.... +.|||.+..++..+.. .-..++.+
T Consensus 68 nr-Ivtcs~------------drnayVw~~~~---~~~WkptlvLlRiNrAAt~V~WsP~enkFAVgSga--r~isVcy~ 129 (361)
T KOG1523|consen 68 NR-IVTCSH------------DRNAYVWTQPS---GGTWKPTLVLLRINRAATCVKWSPKENKFAVGSGA--RLISVCYY 129 (361)
T ss_pred Cc-eeEccC------------CCCccccccCC---CCeeccceeEEEeccceeeEeecCcCceEEeccCc--cEEEEEEE
Confidence 99 777652 234555554 2 332 334556677777 9999999998876622 22345544
Q ss_pred cCCCCCCcceeeeeccc-ccccCCCCCCCeeeCCCCCEEEEeeeecCCcceEEEEccCCCCCCCCCceeEEEecCCCcee
Q 004475 329 CPGSKDVAPRVLFDRVF-ENVYSDPGSPMMTRTSTGTNVIAKIKKENDEQIYILLNGRGFTPEGNIPFLDLFDINTGSKE 407 (751)
Q Consensus 329 ~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~spDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~ 407 (751)
.-+.. --....+.... ..+.. +.|.|++-.|+..+ .|+.-.++ ..|+-+++.....
T Consensus 130 E~ENd-WWVsKhikkPirStv~s------ldWhpnnVLlaaGs----~D~k~rVf------------SayIK~Vdekpap 186 (361)
T KOG1523|consen 130 EQEND-WWVSKHIKKPIRSTVTS------LDWHPNNVLLAAGS----TDGKCRVF------------SAYIKGVDEKPAP 186 (361)
T ss_pred ecccc-eehhhhhCCccccceee------eeccCCcceecccc----cCcceeEE------------EEeeeccccCCCC
Confidence 44432 00000000100 00111 56777776665555 22222221 1233344333222
Q ss_pred EEeeccchhhhhceeee--e-cCCcceeeccCCCEEEEEEecCCCCCeEEEEEcCCC
Q 004475 408 RIWESNREKYFETAVAL--V-FGQGEEDINLNQLKILTSKESKTEITQYHILSWPLK 461 (751)
Q Consensus 408 ~l~~~~~~~~~~~~~~~--~-~~~~~~~~s~dg~~l~~~~~~~~~~~~l~~~~~~~g 461 (751)
.-|...-. +=.....+ . +-.+...|||+|++|+|.. ....++.+|....
T Consensus 187 ~pWgsk~P-FG~lm~E~~~~ggwvh~v~fs~sG~~lawv~----Hds~v~~~da~~p 238 (361)
T KOG1523|consen 187 TPWGSKMP-FGQLMSEASSSGGWVHGVLFSPSGNRLAWVG----HDSTVSFVDAAGP 238 (361)
T ss_pred CCCccCCc-HHHHHHhhccCCCceeeeEeCCCCCEeeEec----CCCceEEeecCCC
Confidence 22332211 00000011 0 1123478999999999985 3445778886544
No 344
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.49 E-value=0.0012 Score=73.74 Aligned_cols=254 Identities=15% Similarity=0.194 Sum_probs=148.0
Q ss_pred eeEEeecCCCCCCCCcccccCCCCcccccceeecCCCCe----EEEEEeecccccccCCceeEEEEEc--CCCCeeeccC
Q 004475 6 GIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKR----IAFSVRVDEEDNVSSCKLRVWIADA--ETGEAKPLFE 79 (751)
Q Consensus 6 ~~~~~~~~~~~~~g~~~~l~~~~~~~~~~~p~~SPDG~~----iaf~~~~~~~~~~~~~~~~l~i~~~--~~g~~~~lt~ 79 (751)
++-++.++--+.++..+.+-.+....+....+|++-|.. ||=-. .++...||-.+. ++++...|..
T Consensus 40 slEifeld~~~~~~dlk~~~s~~s~~rF~kL~W~~~g~~~~GlIaGG~--------edG~I~ly~p~~~~~~~~~~~la~ 111 (1049)
T KOG0307|consen 40 SLEIFELDFSDESSDLKPVGSLQSSNRFNKLAWGSYGSHSHGLIAGGL--------EDGNIVLYDPASIIANASEEVLAT 111 (1049)
T ss_pred ccceeeecccCccccccccccccccccceeeeecccCCCccceeeccc--------cCCceEEecchhhccCcchHHHhh
Confidence 344444443224444466655555557889999999988 44311 134444443332 2344444433
Q ss_pred CCCccccceeeeeEEecCCc-EEEEeecCCCCCCCCCCCCCCCCceeeccccccccchhhhhccCCccchhhhhhheeeE
Q 004475 80 SPDICLNAVFGSFVWVNNST-LLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQ 158 (751)
Q Consensus 80 ~~~~~~~~~~~~~~wspDg~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (751)
...+ ++.|..+.|.|.+. .||-... .++
T Consensus 112 ~~~h--~G~V~gLDfN~~q~nlLASGa~-------------------------------------------------~ge 140 (1049)
T KOG0307|consen 112 KSKH--TGPVLGLDFNPFQGNLLASGAD-------------------------------------------------DGE 140 (1049)
T ss_pred hccc--CCceeeeeccccCCceeeccCC-------------------------------------------------CCc
Confidence 3322 23467889999876 5554421 168
Q ss_pred EEEEcCCCCceecCC----C-ceEEeeeeCCCCceEEEEEecCCcccccccCCCceeEEEEeCCCce-eeeeccCCCCCC
Q 004475 159 LVLGSLDGTAKDFGT----P-AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKL-VRELCDLPPAED 232 (751)
Q Consensus 159 l~~~~~~G~~~~lt~----~-~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~-~~~l~~~~~~~~ 232 (751)
|+++|+..-.++.+. . ..+..++|...-.+|+-+... .....+||+..++ +..++.....
T Consensus 141 I~iWDlnn~~tP~~~~~~~~~~eI~~lsWNrkvqhILAS~s~------------sg~~~iWDlr~~~pii~ls~~~~~-- 206 (1049)
T KOG0307|consen 141 ILIWDLNKPETPFTPGSQAPPSEIKCLSWNRKVSHILASGSP------------SGRAVIWDLRKKKPIIKLSDTPGR-- 206 (1049)
T ss_pred EEEeccCCcCCCCCCCCCCCcccceEeccchhhhHHhhccCC------------CCCceeccccCCCcccccccCCCc--
Confidence 999999553333332 1 678889999888888765443 2356789998663 2233332221
Q ss_pred CCCccCCccCCCceeeeecCCCceEEEEEeccCCCCccccCcccceeeccCCCCCCCCceEeEeeceeEE-EEEecCCce
Q 004475 233 IPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFS-VSWCDDSLA 311 (751)
Q Consensus 233 ~~~~~~~~~~~~~~~~~spdG~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~-~~~spdg~~ 311 (751)
.....++|+||....|+.++ .++.. ..|-++|+- +.....+.++.+...+- +.|++.+..
T Consensus 207 ---------~~~S~l~WhP~~aTql~~As-~dd~~--------PviqlWDlR-~assP~k~~~~H~~GilslsWc~~D~~ 267 (1049)
T KOG0307|consen 207 ---------MHCSVLAWHPDHATQLLVAS-GDDSA--------PVIQLWDLR-FASSPLKILEGHQRGILSLSWCPQDPR 267 (1049)
T ss_pred ---------cceeeeeeCCCCceeeeeec-CCCCC--------ceeEeeccc-ccCCchhhhcccccceeeeccCCCCch
Confidence 23457899999998666655 22222 256666652 22334455555555565 999999877
Q ss_pred EEEeeeecccceeEEEecCCCCCCcceeeeecc--cccccCCCCCCCeeeCCCCC
Q 004475 312 LVNETWYKTSQTRTWLVCPGSKDVAPRVLFDRV--FENVYSDPGSPMMTRTSTGT 364 (751)
Q Consensus 312 l~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~--~~~~~~~~~~~~~~~spDG~ 364 (751)
++.++.. ..+++..+.+++ ..|.... .++++. +.|.|-.-
T Consensus 268 lllSsgk---D~~ii~wN~~tg----Evl~~~p~~~nW~fd------v~w~pr~P 309 (1049)
T KOG0307|consen 268 LLLSSGK---DNRIICWNPNTG----EVLGELPAQGNWCFD------VQWCPRNP 309 (1049)
T ss_pred hhhcccC---CCCeeEecCCCc----eEeeecCCCCcceee------eeecCCCc
Confidence 7776633 357888888885 3443333 244443 66777664
No 345
>KOG1516 consensus Carboxylesterase and related proteins [General function prediction only]
Probab=97.48 E-value=0.00018 Score=80.30 Aligned_cols=130 Identities=21% Similarity=0.211 Sum_probs=79.6
Q ss_pred eEEEEEEcCCCCCCCCCCCccEEEEEcCCCCcCcccCCcccCCCCccCCCCchHHHHHHhCCeEEEEcCCC-CCCCCCCC
Q 004475 493 PLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGPSI-PIIGEGDK 571 (751)
Q Consensus 493 ~i~~~~~~P~~~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~v~~~~~~-~~~g~g~~ 571 (751)
-+..-+|.|...... + +|++|++|||++..++.. .+... .....+..+..+|+.++|+ +..|....
T Consensus 96 CLylNV~tp~~~~~~--~-~pV~V~iHGG~~~~gs~~--------~~~~~--~~~~~~~~~~VVvVt~~YRLG~lGF~st 162 (545)
T KOG1516|consen 96 CLYLNVYTPQGCSES--K-LPVMVYIHGGGFQFGSAS--------SFEII--SPAYVLLLKDVVVVTINYRLGPLGFLST 162 (545)
T ss_pred CceEEEeccCCCccC--C-CCEEEEEeCCceeecccc--------chhhc--CchhccccCCEEEEEecccceeceeeec
Confidence 367778888764322 2 899999999986543321 11111 1122334567888887764 22232111
Q ss_pred CCCchhHHHHHHHHHHHHHHHHHc-C--CCCCCcEEEEEeChHHHHHHHHHHhC--CCceeEEEEccCC
Q 004475 572 LPNDRFVEQLVSSAEAAVEEVVRR-G--VADPSRIAVGGHSYGAFMTAHLLAHA--PHLFCCGIARSGS 635 (751)
Q Consensus 572 ~~~~~~~~~~~~d~~~~v~~l~~~-~--~id~~~i~l~G~S~GG~~a~~~a~~~--p~~~~~~v~~~~~ 635 (751)
..........+.|...+++|+++. . .=|+++|.|+|||+||..+..+.... ...|..+|.+++.
T Consensus 163 ~d~~~~gN~gl~Dq~~AL~wv~~~I~~FGGdp~~vTl~G~saGa~~v~~l~~Sp~s~~LF~~aI~~SG~ 231 (545)
T KOG1516|consen 163 GDSAAPGNLGLFDQLLALRWVKDNIPSFGGDPKNVTLFGHSAGAASVSLLTLSPHSRGLFHKAISMSGN 231 (545)
T ss_pred CCCCCCCcccHHHHHHHHHHHHHHHHhcCCCCCeEEEEeechhHHHHHHHhcCHhhHHHHHHHHhhccc
Confidence 100111223355888999999875 1 13899999999999999997776532 2467777777775
No 346
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=97.47 E-value=0.0025 Score=62.00 Aligned_cols=162 Identities=12% Similarity=0.188 Sum_probs=91.4
Q ss_pred EEEEEcC--CCCceecCCC-ceEEeeeeCCCCceEEEEEecCCcccccccCCCceeEEEEeCCCceeeeeccCCCCCCCC
Q 004475 158 QLVLGSL--DGTAKDFGTP-AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIP 234 (751)
Q Consensus 158 ~l~~~~~--~G~~~~lt~~-~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~ 234 (751)
+|-++|. +-..+.++-+ ..+..+.|+|-...|+..... +..|++||+..+.+..-......
T Consensus 168 ~i~IWD~~R~~Pv~smswG~Dti~svkfNpvETsILas~~s------------DrsIvLyD~R~~~Pl~KVi~~mR---- 231 (433)
T KOG0268|consen 168 QIDIWDEQRDNPVSSMSWGADSISSVKFNPVETSILASCAS------------DRSIVLYDLRQASPLKKVILTMR---- 231 (433)
T ss_pred eeeecccccCCccceeecCCCceeEEecCCCcchheeeecc------------CCceEEEecccCCccceeeeecc----
Confidence 4555565 3355556555 678899999999888776532 34689999976543221111111
Q ss_pred CccCCccCCCceeeeecCCCceEEEEEeccCCCCccccCcccceeeccCCCCCCCCceEeEee-ceeEE-EEEecCCceE
Q 004475 235 VCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKL-DLRFS-VSWCDDSLAL 312 (751)
Q Consensus 235 ~~~~~~~~~~~~~~~spdG~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~-~~~~~-~~~spdg~~l 312 (751)
-..++|+|++- .|+.+. ....||.+|.-.. ..+..+... --.+. +.|||-|+-+
T Consensus 232 ---------TN~IswnPeaf---nF~~a~----------ED~nlY~~DmR~l--~~p~~v~~dhvsAV~dVdfsptG~Ef 287 (433)
T KOG0268|consen 232 ---------TNTICWNPEAF---NFVAAN----------EDHNLYTYDMRNL--SRPLNVHKDHVSAVMDVDFSPTGQEF 287 (433)
T ss_pred ---------ccceecCcccc---ceeecc----------ccccceehhhhhh--cccchhhcccceeEEEeccCCCcchh
Confidence 12689999543 332211 2347999987311 112122222 22333 8999999998
Q ss_pred EEeeeecccceeEEEecCCCCCCcceeee-ecccccccCCCCCCCeeeCCCCCEEEEeee
Q 004475 313 VNETWYKTSQTRTWLVCPGSKDVAPRVLF-DRVFENVYSDPGSPMMTRTSTGTNVIAKIK 371 (751)
Q Consensus 313 ~~~~~~~~~~~~l~~~~~~~~~~~~~~l~-~~~~~~~~~~~~~~~~~~spDG~~l~~~~~ 371 (751)
+.++- ...|-+++...+ ..+.+. ...-+.+.. +.||.|.++|+..+.
T Consensus 288 vsgsy----DksIRIf~~~~~--~SRdiYhtkRMq~V~~------Vk~S~Dskyi~SGSd 335 (433)
T KOG0268|consen 288 VSGSY----DKSIRIFPVNHG--HSRDIYHTKRMQHVFC------VKYSMDSKYIISGSD 335 (433)
T ss_pred ccccc----cceEEEeecCCC--cchhhhhHhhhheeeE------EEEeccccEEEecCC
Confidence 87552 233444444443 223332 122223333 789999999988773
No 347
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=97.46 E-value=0.003 Score=66.19 Aligned_cols=127 Identities=18% Similarity=0.201 Sum_probs=71.4
Q ss_pred eEEEEEcC-CC-CceecCCC-ceEEeeeeCCCCceEEEEEecCCcccccccCCCceeEEEEeCCCceeeeeccCCCCCCC
Q 004475 157 AQLVLGSL-DG-TAKDFGTP-AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDI 233 (751)
Q Consensus 157 ~~l~~~~~-~G-~~~~lt~~-~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~ 233 (751)
..|+++|. +| ..++|..+ ..+..++||.||++++--+.+ ..+.+|+..-.-.-+.
T Consensus 33 ~rlliyD~ndG~llqtLKgHKDtVycVAys~dGkrFASG~aD-------------K~VI~W~~klEG~LkY--------- 90 (1081)
T KOG1538|consen 33 SRLLVYDTSDGTLLQPLKGHKDTVYCVAYAKDGKRFASGSAD-------------KSVIIWTSKLEGILKY--------- 90 (1081)
T ss_pred CEEEEEeCCCcccccccccccceEEEEEEccCCceeccCCCc-------------eeEEEecccccceeee---------
Confidence 58999999 77 67778777 778899999999998754332 2355666532111111
Q ss_pred CCccCCccCCCceeeeecCCCceEEEEEeccCCCCccccCcccceeeccCCCCCCCCceEeEeeceeEE-EEEecCCceE
Q 004475 234 PVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFS-VSWCDDSLAL 312 (751)
Q Consensus 234 ~~~~~~~~~~~~~~~~spdG~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~-~~~spdg~~l 312 (751)
+....+..++|+|=... ++-++..+-+ +++.+ ...... .....++. .+|..||+++
T Consensus 91 -----SH~D~IQCMsFNP~~h~-LasCsLsdFg-------------lWS~~---qK~V~K-~kss~R~~~CsWtnDGqyl 147 (1081)
T KOG1538|consen 91 -----SHNDAIQCMSFNPITHQ-LASCSLSDFG-------------LWSPE---QKSVSK-HKSSSRIICCSWTNDGQYL 147 (1081)
T ss_pred -----ccCCeeeEeecCchHHH-hhhcchhhcc-------------ccChh---hhhHHh-hhhheeEEEeeecCCCcEE
Confidence 11122446778887766 4444422211 22221 001100 01123444 7999999999
Q ss_pred EEeeeecccceeEEEecCCC
Q 004475 313 VNETWYKTSQTRTWLVCPGS 332 (751)
Q Consensus 313 ~~~~~~~~~~~~l~~~~~~~ 332 (751)
+.+.. +.+|-+.+..+
T Consensus 148 alG~~----nGTIsiRNk~g 163 (1081)
T KOG1538|consen 148 ALGMF----NGTISIRNKNG 163 (1081)
T ss_pred EEecc----CceEEeecCCC
Confidence 88662 23455555544
No 348
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.45 E-value=0.036 Score=52.68 Aligned_cols=117 Identities=15% Similarity=0.120 Sum_probs=67.2
Q ss_pred CCcccccCCCCcccccceeecCCCCe-EEEEEeecccccccCCceeEEEEEcCCCC-eeeccCCCCccccceeeeeEEec
Q 004475 19 GPEKEVHGYPDGAKINFVSWSPDGKR-IAFSVRVDEEDNVSSCKLRVWIADAETGE-AKPLFESPDICLNAVFGSFVWVN 96 (751)
Q Consensus 19 g~~~~l~~~~~~~~~~~p~~SPDG~~-iaf~~~~~~~~~~~~~~~~l~i~~~~~g~-~~~lt~~~~~~~~~~~~~~~wsp 96 (751)
|+...-+.+|.. ....+++|--.+ ++|.++ -+.-.++.|..+++ +..+...+.+- .+..=+|||
T Consensus 58 Gk~v~~~~lpaR--~Hgi~~~p~~~ravafARr---------PGtf~~vfD~~~~~~pv~~~s~~~RH---fyGHGvfs~ 123 (366)
T COG3490 58 GKIVFATALPAR--GHGIAFHPALPRAVAFARR---------PGTFAMVFDPNGAQEPVTLVSQEGRH---FYGHGVFSP 123 (366)
T ss_pred Cceeeeeecccc--cCCeecCCCCcceEEEEec---------CCceEEEECCCCCcCcEEEecccCce---eecccccCC
Confidence 444443335543 456778887655 566543 22556677887765 34444333321 233448999
Q ss_pred CCcEEEEeecCCCCCCCCCCCCCCCCceeeccccccccchhhhhccCCccchhhhhhheeeEEEEEcCCCCceecCC---
Q 004475 97 NSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSLDGTAKDFGT--- 173 (751)
Q Consensus 97 Dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~G~~~~lt~--- 173 (751)
||++|+.+-.+.+. ...-|-++|.+-.-+++.+
T Consensus 124 dG~~LYATEndfd~--------------------------------------------~rGViGvYd~r~~fqrvgE~~t 159 (366)
T COG3490 124 DGRLLYATENDFDP--------------------------------------------NRGVIGVYDAREGFQRVGEFST 159 (366)
T ss_pred CCcEEEeecCCCCC--------------------------------------------CCceEEEEecccccceeccccc
Confidence 99988766222111 1145667777433333322
Q ss_pred C-ceEEeeeeCCCCceEEEEE
Q 004475 174 P-AVYTAVEPSPDQKYVLITS 193 (751)
Q Consensus 174 ~-~~~~~~~~SpDG~~i~~~~ 193 (751)
. -...++.|.+||+.|++..
T Consensus 160 ~GiGpHev~lm~DGrtlvvan 180 (366)
T COG3490 160 HGIGPHEVTLMADGRTLVVAN 180 (366)
T ss_pred CCcCcceeEEecCCcEEEEeC
Confidence 2 4556899999999998863
No 349
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=97.44 E-value=0.016 Score=55.76 Aligned_cols=63 Identities=17% Similarity=0.238 Sum_probs=42.0
Q ss_pred cccceeecCCCCeEEEEEeecccccccCCceeEEEEEcCCCC-eeeccCCCCccccceeeeeEEecCCcEEEEeec
Q 004475 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGE-AKPLFESPDICLNAVFGSFVWVNNSTLLIFTIP 106 (751)
Q Consensus 32 ~~~~p~~SPDG~~iaf~~~~~~~~~~~~~~~~l~i~~~~~g~-~~~lt~~~~~~~~~~~~~~~wspDg~~l~~~~~ 106 (751)
.+..=+|++|++.||... ...+|.|....+.+ .+++-....++ ..+..+.|+|.+.+|.-.+-
T Consensus 12 pitchAwn~drt~iAv~~----------~~~evhiy~~~~~~~w~~~htls~Hd--~~vtgvdWap~snrIvtcs~ 75 (361)
T KOG1523|consen 12 PITCHAWNSDRTQIAVSP----------NNHEVHIYSMLGADLWEPAHTLSEHD--KIVTGVDWAPKSNRIVTCSH 75 (361)
T ss_pred ceeeeeecCCCceEEecc----------CCceEEEEEecCCCCceeceehhhhC--cceeEEeecCCCCceeEccC
Confidence 366679999999999963 33566666665666 33332223332 24667999999999987744
No 350
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=97.43 E-value=0.02 Score=56.58 Aligned_cols=150 Identities=14% Similarity=0.062 Sum_probs=80.2
Q ss_pred ceEEeeeeCCCCceEEEEEecCCcccccccCCCceeEEEEeCCCceeeeeccCCCCCCCCCccCCccCCCceeeeecCCC
Q 004475 175 AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKP 254 (751)
Q Consensus 175 ~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~spdG~ 254 (751)
..+.-+.|.|--.-+++++.. .+.+.+|++.+++...-..++ ..+.+++|+-||.
T Consensus 132 rrVg~V~wHPtA~NVLlsag~------------Dn~v~iWnv~tgeali~l~hp-------------d~i~S~sfn~dGs 186 (472)
T KOG0303|consen 132 RRVGLVQWHPTAPNVLLSAGS------------DNTVSIWNVGTGEALITLDHP-------------DMVYSMSFNRDGS 186 (472)
T ss_pred eeEEEEeecccchhhHhhccC------------CceEEEEeccCCceeeecCCC-------------CeEEEEEeccCCc
Confidence 455678899988777776543 457889999988643211122 3356889999999
Q ss_pred ceEEEEEeccCCCCccccCcccceeeccCCCCCCCCceEeEeecee-EE-EEEecCCceEEEeeeecccceeEEEecCCC
Q 004475 255 STLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLR-FS-VSWCDDSLALVNETWYKTSQTRTWLVCPGS 332 (751)
Q Consensus 255 ~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~-~~-~~~spdg~~l~~~~~~~~~~~~l~~~~~~~ 332 (751)
. ++-+. ....|.++|.- ++....+-..+.+. .. +.|-.+|+ |+.+.-..-...++-+.+.+.
T Consensus 187 ~-l~Ttc------------kDKkvRv~dpr--~~~~v~e~~~heG~k~~Raifl~~g~-i~tTGfsr~seRq~aLwdp~n 250 (472)
T KOG0303|consen 187 L-LCTTC------------KDKKVRVIDPR--RGTVVSEGVAHEGAKPARAIFLASGK-IFTTGFSRMSERQIALWDPNN 250 (472)
T ss_pred e-eeeec------------ccceeEEEcCC--CCcEeeecccccCCCcceeEEeccCc-eeeeccccccccceeccCccc
Confidence 8 54433 12367777752 22222121122222 23 77889999 332221111223344445544
Q ss_pred CCCcceeeeecccccccCCCCCCCeeeCCCCCEEEEeee
Q 004475 333 KDVAPRVLFDRVFENVYSDPGSPMMTRTSTGTNVIAKIK 371 (751)
Q Consensus 333 ~~~~~~~l~~~~~~~~~~~~~~~~~~~spDG~~l~~~~~ 371 (751)
- +++..+.+.+.. .+.-+|-|.+|-+.|+...+
T Consensus 251 l-~eP~~~~elDtS-----nGvl~PFyD~dt~ivYl~GK 283 (472)
T KOG0303|consen 251 L-EEPIALQELDTS-----NGVLLPFYDPDTSIVYLCGK 283 (472)
T ss_pred c-cCcceeEEeccC-----CceEEeeecCCCCEEEEEec
Confidence 3 333333332221 13333668888876665553
No 351
>KOG2931 consensus Differentiation-related gene 1 protein (NDR1 protein), related proteins [Function unknown]
Probab=97.43 E-value=0.0057 Score=58.48 Aligned_cols=224 Identities=15% Similarity=0.146 Sum_probs=125.9
Q ss_pred eEEEEEEcCCCceEEEEEEcCCCCCCCCCCCccEEEEEcCCCCcCcccCCcccCCCCccCCCCc-hHHHHHHhCCeEEEE
Q 004475 481 KEMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTP-TSSLIFLARRFAVLA 559 (751)
Q Consensus 481 ~e~i~~~~~~~~~i~~~~~~P~~~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~G~~v~~ 559 (751)
.++..+.+.-| .+...++--.+ +++|++|-.|.-|-..... |.+... .....++.+ |.|+-
T Consensus 22 ~~e~~V~T~~G-~v~V~V~Gd~~------~~kpaiiTyhDlglN~~sc----------Fq~ff~~p~m~ei~~~-fcv~H 83 (326)
T KOG2931|consen 22 CQEHDVETAHG-VVHVTVYGDPK------GNKPAIITYHDLGLNHKSC----------FQGFFNFPDMAEILEH-FCVYH 83 (326)
T ss_pred ceeeeeccccc-cEEEEEecCCC------CCCceEEEecccccchHhH----------hHHhhcCHhHHHHHhh-eEEEe
Confidence 45555555444 57777775332 2468899999865332221 111111 223355556 87776
Q ss_pred cCCCCCCCC--CCCCCCc----hhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEcc
Q 004475 560 GPSIPIIGE--GDKLPND----RFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARS 633 (751)
Q Consensus 560 ~~~~~~~g~--g~~~~~~----~~~~~~~~d~~~~v~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~ 633 (751)
++. +|+ |-...+. ...+++.+++..+++++. -+.|.-+|--+|+++-.+.|..+|+++-++|+++
T Consensus 84 V~~---PGqe~gAp~~p~~y~yPsmd~LAd~l~~VL~~f~------lk~vIg~GvGAGAyIL~rFAl~hp~rV~GLvLIn 154 (326)
T KOG2931|consen 84 VDA---PGQEDGAPSFPEGYPYPSMDDLADMLPEVLDHFG------LKSVIGMGVGAGAYILARFALNHPERVLGLVLIN 154 (326)
T ss_pred cCC---CccccCCccCCCCCCCCCHHHHHHHHHHHHHhcC------cceEEEecccccHHHHHHHHhcChhheeEEEEEe
Confidence 433 333 2111111 234566777777777662 3568999999999999999999999999999998
Q ss_pred CCCCCCC-Ccc-------------Ccc-------------ccc-cc--------------------chhhHHHHHhcCcc
Q 004475 634 GSYNKTL-TPF-------------GFQ-------------TEF-RT--------------------LWEATNVYIEMSPI 665 (751)
Q Consensus 634 ~~~d~~~-~~~-------------~~~-------------~~~-~~--------------------~~~~~~~~~~~~~~ 665 (751)
+...-.. .+| ++. .+. .. .+.....|.....+
T Consensus 155 ~~~~a~gwiew~~~K~~s~~l~~~Gmt~~~~d~ll~H~Fg~e~~~~~~diVq~Yr~~l~~~~N~~Nl~~fl~ayn~R~DL 234 (326)
T KOG2931|consen 155 CDPCAKGWIEWAYNKVSSNLLYYYGMTQGVKDYLLAHHFGKEELGNNSDIVQEYRQHLGERLNPKNLALFLNAYNGRRDL 234 (326)
T ss_pred cCCCCchHHHHHHHHHHHHHHHhhchhhhHHHHHHHHHhccccccccHHHHHHHHHHHHhcCChhHHHHHHHHhcCCCCc
Confidence 7533110 000 000 000 00 00000111111111
Q ss_pred c-----ccCCCCCCEEEEEcCCCCCCCCChHHHHHHHHHHHhCCCcEEEEEeCCCCCcCCccccHHHHHHHHHHHHHH
Q 004475 666 T-----HANKIKKPILIIHGEVDDKVGLFPMQAERFFDALKGHGALSRLVLLPFEHHVYAARENVMHVIWETDRWLQK 738 (751)
Q Consensus 666 ~-----~~~~~~~P~li~~G~~D~~vp~~~~~~~~~~~~l~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~fl~~ 738 (751)
. ....++||+|++.|..-+. .+.+.++..+|.. ....+..+.+++-... .+.+....+.+.-|+..
T Consensus 235 ~~~r~~~~~tlkc~vllvvGd~Sp~----~~~vv~~n~~Ldp--~~ttllk~~d~g~l~~-e~qP~kl~ea~~~FlqG 305 (326)
T KOG2931|consen 235 SIERPKLGTTLKCPVLLVVGDNSPH----VSAVVECNSKLDP--TYTTLLKMADCGGLVQ-EEQPGKLAEAFKYFLQG 305 (326)
T ss_pred cccCCCcCccccccEEEEecCCCch----hhhhhhhhcccCc--ccceEEEEcccCCccc-ccCchHHHHHHHHHHcc
Confidence 1 0114569999999999876 3556666666643 3567888888876654 33455566666666653
No 352
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=97.42 E-value=0.052 Score=51.93 Aligned_cols=78 Identities=12% Similarity=0.124 Sum_probs=52.2
Q ss_pred eEEEEEcCCCC--ceecCCC-ceEEeeeeCCCCceEEEEEecCCcccccccCCCceeEEEEeCCCceeeeeccCCCCCCC
Q 004475 157 AQLVLGSLDGT--AKDFGTP-AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDI 233 (751)
Q Consensus 157 ~~l~~~~~~G~--~~~lt~~-~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~ 233 (751)
-.+|.+.-+|. .+-..+. +.+...+||.||..++....++ ++-+||+.+++.+++..+...
T Consensus 52 VR~wevq~~g~~~~ka~~~~~~PvL~v~WsddgskVf~g~~Dk-------------~~k~wDL~S~Q~~~v~~Hd~p--- 115 (347)
T KOG0647|consen 52 VRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDGSKVFSGGCDK-------------QAKLWDLASGQVSQVAAHDAP--- 115 (347)
T ss_pred eEEEEEecCCcccchhhhccCCCeEEEEEccCCceEEeeccCC-------------ceEEEEccCCCeeeeeecccc---
Confidence 35565555662 2323333 7788999999998777665443 577999999988887555433
Q ss_pred CCccCCccCCCceeeeecCCCceEEEE
Q 004475 234 PVCYNSVREGMRSISWRADKPSTLYWV 260 (751)
Q Consensus 234 ~~~~~~~~~~~~~~~~spdG~~~i~~~ 260 (751)
++.+.|-+...+-++.+
T Consensus 116 ----------vkt~~wv~~~~~~cl~T 132 (347)
T KOG0647|consen 116 ----------VKTCHWVPGMNYQCLVT 132 (347)
T ss_pred ----------eeEEEEecCCCcceeEe
Confidence 56788888877534443
No 353
>KOG4840 consensus Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]
Probab=97.42 E-value=0.004 Score=56.56 Aligned_cols=90 Identities=13% Similarity=0.135 Sum_probs=66.5
Q ss_pred CchHHHHHHhCCeEEEEcCCC-CCCCCCCCCCCchhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHh
Q 004475 543 TPTSSLIFLARRFAVLAGPSI-PIIGEGDKLPNDRFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAH 621 (751)
Q Consensus 543 ~~~~~~~~~~~G~~v~~~~~~-~~~g~g~~~~~~~~~~~~~~d~~~~v~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~ 621 (751)
...+..++.+.+|.++.+.-+ .+.|+|.. ...+..+|+..+++++.-..+ ..+|+++|||-|..-.++++..
T Consensus 55 ~~~L~~~lde~~wslVq~q~~Ssy~G~Gt~-----slk~D~edl~~l~~Hi~~~~f--St~vVL~GhSTGcQdi~yYlTn 127 (299)
T KOG4840|consen 55 TTMLNRYLDENSWSLVQPQLRSSYNGYGTF-----SLKDDVEDLKCLLEHIQLCGF--STDVVLVGHSTGCQDIMYYLTN 127 (299)
T ss_pred HHHHHHHHhhccceeeeeeccccccccccc-----cccccHHHHHHHHHHhhccCc--ccceEEEecCccchHHHHHHHh
Confidence 345666888899999874332 34556553 345568899999998865443 3489999999999999988854
Q ss_pred C--CCceeEEEEccCCCCCC
Q 004475 622 A--PHLFCCGIARSGSYNKT 639 (751)
Q Consensus 622 ~--p~~~~~~v~~~~~~d~~ 639 (751)
. |..+.++|+.+|+.|..
T Consensus 128 t~~~r~iraaIlqApVSDrE 147 (299)
T KOG4840|consen 128 TTKDRKIRAAILQAPVSDRE 147 (299)
T ss_pred ccchHHHHHHHHhCccchhh
Confidence 3 56788999999998865
No 354
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=97.41 E-value=0.00097 Score=65.87 Aligned_cols=124 Identities=14% Similarity=0.161 Sum_probs=87.0
Q ss_pred ceeEEeecCCCCCCCCcccccCCCCcccccceeecCCCCeEEEEEeecccccccCCceeEEEEEcCCCCeeeccCCCCcc
Q 004475 5 TGIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDIC 84 (751)
Q Consensus 5 ~~~~~~~~~~~~~~g~~~~l~~~~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~~~~~l~i~~~~~g~~~~lt~~~~~~ 84 (751)
-+|..||.-+ +..+.- .|.+..+.+...|+||..|.-.+ ....|-++|+.+.+.++...-....
T Consensus 322 kkvRfwD~Rs----~~~~~s--v~~gg~vtSl~ls~~g~~lLsss----------RDdtl~viDlRt~eI~~~~sA~g~k 385 (459)
T KOG0288|consen 322 KKVRFWDIRS----ADKTRS--VPLGGRVTSLDLSMDGLELLSSS----------RDDTLKVIDLRTKEIRQTFSAEGFK 385 (459)
T ss_pred cceEEEeccC----CceeeE--eecCcceeeEeeccCCeEEeeec----------CCCceeeeecccccEEEEeeccccc
Confidence 3577777644 333332 46666899999999999987753 2256778898888887775544322
Q ss_pred ccceeeeeEEecCCcEEEEeecCCCCCCCCCCCCCCCCceeeccccccccchhhhhccCCccchhhhhhheeeEEEEEcC
Q 004475 85 LNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL 164 (751)
Q Consensus 85 ~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 164 (751)
.......+.|||||.+++..+.+ +.||+|++
T Consensus 386 ~asDwtrvvfSpd~~YvaAGS~d-------------------------------------------------gsv~iW~v 416 (459)
T KOG0288|consen 386 CASDWTRVVFSPDGSYVAAGSAD-------------------------------------------------GSVYIWSV 416 (459)
T ss_pred cccccceeEECCCCceeeeccCC-------------------------------------------------CcEEEEEc
Confidence 11125678999999999987543 57899999
Q ss_pred -CCCceecCCC----ceEEeeeeCCCCceEEEEE
Q 004475 165 -DGTAKDFGTP----AVYTAVEPSPDQKYVLITS 193 (751)
Q Consensus 165 -~G~~~~lt~~----~~~~~~~~SpDG~~i~~~~ 193 (751)
+|+...+... ..+..++|+|-|+.++-..
T Consensus 417 ~tgKlE~~l~~s~s~~aI~s~~W~~sG~~Llsad 450 (459)
T KOG0288|consen 417 FTGKLEKVLSLSTSNAAITSLSWNPSGSGLLSAD 450 (459)
T ss_pred cCceEEEEeccCCCCcceEEEEEcCCCchhhccc
Confidence 7765544322 3688999999999987654
No 355
>COG4814 Uncharacterized protein with an alpha/beta hydrolase fold [General function prediction only]
Probab=97.40 E-value=0.0029 Score=59.03 Aligned_cols=152 Identities=14% Similarity=0.070 Sum_probs=92.8
Q ss_pred HHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCC-----ceeEEEEccCCCCCCCC-c------cCc
Q 004475 578 VEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPH-----LFCCGIARSGSYNKTLT-P------FGF 645 (751)
Q Consensus 578 ~~~~~~d~~~~v~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~p~-----~~~~~v~~~~~~d~~~~-~------~~~ 645 (751)
..+....+..++.+|.++..+ .++-++||||||.....++..+.+ .+...|++.+.++.... + ...
T Consensus 115 ~~~~s~wlk~~msyL~~~Y~i--~k~n~VGhSmGg~~~~~Y~~~yg~dks~P~lnK~V~l~gpfN~~~l~~de~v~~v~~ 192 (288)
T COG4814 115 GLDQSKWLKKAMSYLQKHYNI--PKFNAVGHSMGGLGLTYYMIDYGDDKSLPPLNKLVSLAGPFNVGNLVPDETVTDVLK 192 (288)
T ss_pred hhhHHHHHHHHHHHHHHhcCC--ceeeeeeeccccHHHHHHHHHhcCCCCCcchhheEEecccccccccCCCcchheeec
Confidence 344477788999999998765 578899999999999999887632 36778888877761111 1 000
Q ss_pred ccccccchhhHHHHHhcCcccccCCCCCCEEEEEcCCC------CCCCCChHHHHHHHHHHHhCCCcEEEEEeCC--CCC
Q 004475 646 QTEFRTLWEATNVYIEMSPITHANKIKKPILIIHGEVD------DKVGLFPMQAERFFDALKGHGALSRLVLLPF--EHH 717 (751)
Q Consensus 646 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~li~~G~~D------~~vp~~~~~~~~~~~~l~~~~~~~~~~~~~~--~~H 717 (751)
... ...-.....|+..... .+ .-.+-+|+|.|+.| ..|| ...+...+..+...++.+.-.+++| +.|
T Consensus 193 ~~~-~~~~t~y~~y~~~n~k-~v-~~~~evl~IaGDl~dg~~tDG~Vp--~assls~~~lf~~~~ksy~e~~~~Gk~a~H 267 (288)
T COG4814 193 DGP-GLIKTPYYDYIAKNYK-KV-SPNTEVLLIAGDLDDGKQTDGAVP--WASSLSIYHLFKKNGKSYIESLYKGKDARH 267 (288)
T ss_pred cCc-cccCcHHHHHHHhcce-eC-CCCcEEEEEecccccCCcCCCcee--chHhHHHHHHhccCcceeEEEeeeCCcchh
Confidence 000 0000000111111100 00 11356999999764 5677 8888888888888777666666765 567
Q ss_pred cCCccccHHHHHHHHHHHHHH
Q 004475 718 VYAARENVMHVIWETDRWLQK 738 (751)
Q Consensus 718 ~~~~~~~~~~~~~~~~~fl~~ 738 (751)
.-. .+...+...+..||-+
T Consensus 268 s~l--hen~~v~~yv~~FLw~ 286 (288)
T COG4814 268 SKL--HENPTVAKYVKNFLWE 286 (288)
T ss_pred hcc--CCChhHHHHHHHHhhc
Confidence 643 2233566777777753
No 356
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=97.35 E-value=0.018 Score=58.13 Aligned_cols=59 Identities=24% Similarity=0.212 Sum_probs=39.8
Q ss_pred cccceeecCCCCeEEEEEeecccccccCCceeEEEEEcCCCCeeeccCCCCccccceeeeeEEecCCcEEEEe
Q 004475 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFT 104 (751)
Q Consensus 32 ~~~~p~~SPDG~~iaf~~~~~~~~~~~~~~~~l~i~~~~~g~~~~lt~~~~~~~~~~~~~~~wspDg~~l~~~ 104 (751)
.+...+.||||++||+- .....|.|++.++.+.++.+.+... .+.+++|--.-..|+..
T Consensus 204 eil~~avS~Dgkylatg----------g~d~~v~Iw~~~t~ehv~~~~ghr~----~V~~L~fr~gt~~lys~ 262 (479)
T KOG0299|consen 204 EILTLAVSSDGKYLATG----------GRDRHVQIWDCDTLEHVKVFKGHRG----AVSSLAFRKGTSELYSA 262 (479)
T ss_pred eeEEEEEcCCCcEEEec----------CCCceEEEecCcccchhhccccccc----ceeeeeeecCccceeee
Confidence 45678899999999993 3345666889999998888655432 35566664333445444
No 357
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.34 E-value=0.003 Score=62.81 Aligned_cols=148 Identities=15% Similarity=0.109 Sum_probs=81.9
Q ss_pred cccccceeecCCCCeEEEEEeecccccccCCceeEEEEEcCCCC-eeeccCCCCccccceeeeeEEecCC---cEEEEee
Q 004475 30 GAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGE-AKPLFESPDICLNAVFGSFVWVNNS---TLLIFTI 105 (751)
Q Consensus 30 ~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~~~~~l~i~~~~~g~-~~~lt~~~~~~~~~~~~~~~wspDg---~~l~~~~ 105 (751)
+.++....|||||+.||++.. ....|+++++|- ...+|.... +..+..+.|+-|+ ...++..
T Consensus 186 ~~eV~DL~FS~dgk~lasig~-----------d~~~VW~~~~g~~~a~~t~~~k---~~~~~~cRF~~d~~~~~l~laa~ 251 (398)
T KOG0771|consen 186 HAEVKDLDFSPDGKFLASIGA-----------DSARVWSVNTGAALARKTPFSK---DEMFSSCRFSVDNAQETLRLAAS 251 (398)
T ss_pred cCccccceeCCCCcEEEEecC-----------CceEEEEeccCchhhhcCCccc---chhhhhceecccCCCceEEEEEe
Confidence 346889999999999999752 255555666763 334442222 1135688898776 3333332
Q ss_pred cCCCCCCCCCCCCCCCCceeeccccccccchhhhhccCCccchhhhhhheeeEEEEEcCCCCceecCCC-ceEEeeeeCC
Q 004475 106 PSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSLDGTAKDFGTP-AVYTAVEPSP 184 (751)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~G~~~~lt~~-~~~~~~~~Sp 184 (751)
....+.. .. ....+|..+--+..++.... ..+..++.|+
T Consensus 252 ~~~~~~v--------------------~~--------------------~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~ 291 (398)
T KOG0771|consen 252 QFPGGGV--------------------RL--------------------CDISLWSGSNFLRLRKKIKRFKSISSLAVSD 291 (398)
T ss_pred cCCCCce--------------------eE--------------------EEeeeeccccccchhhhhhccCcceeEEEcC
Confidence 1110000 00 00122222211133444434 6889999999
Q ss_pred CCceEEEEEecCCcccccccCCCceeEEEEeCCCceeeeeccCCCCCCCCCccCCccCCCceeeeecCCCc
Q 004475 185 DQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPS 255 (751)
Q Consensus 185 DG~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~spdG~~ 255 (751)
|||++++..+++ ++-+++...-+..++.... +..-+.+++|+||.++
T Consensus 292 dGkf~AlGT~dG-------------sVai~~~~~lq~~~~vk~a-----------H~~~VT~ltF~Pdsr~ 338 (398)
T KOG0771|consen 292 DGKFLALGTMDG-------------SVAIYDAKSLQRLQYVKEA-----------HLGFVTGLTFSPDSRY 338 (398)
T ss_pred CCcEEEEeccCC-------------cEEEEEeceeeeeEeehhh-----------heeeeeeEEEcCCcCc
Confidence 999999987653 4556666544333322211 1112457899999988
No 358
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=97.34 E-value=0.067 Score=57.42 Aligned_cols=272 Identities=12% Similarity=0.085 Sum_probs=149.0
Q ss_pred ceeEEeecCCCCCCCCccc-ccCCCCccccc-ceeecCCCCeEEEEEeecccccccCCceeEEEEEcCCCCeeeccCCCC
Q 004475 5 TGIGIHRLLPDDSLGPEKE-VHGYPDGAKIN-FVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPD 82 (751)
Q Consensus 5 ~~~~~~~~~~~~~~g~~~~-l~~~~~~~~~~-~p~~SPDG~~iaf~~~~~~~~~~~~~~~~l~i~~~~~g~~~~lt~~~~ 82 (751)
-||.++|..+ .+..+ |.+..+ .+. .=-|-|+-+.+|.. .+.+.|.+++..+....-+-.+..
T Consensus 303 Qnl~l~d~~~----l~i~k~ivG~nd--EI~Dm~~lG~e~~~laVA----------TNs~~lr~y~~~~~~c~ii~GH~e 366 (775)
T KOG0319|consen 303 QNLFLYDEDE----LTIVKQIVGYND--EILDMKFLGPEESHLAVA----------TNSPELRLYTLPTSYCQIIPGHTE 366 (775)
T ss_pred ceEEEEEccc----cEEehhhcCCch--hheeeeecCCccceEEEE----------eCCCceEEEecCCCceEEEeCchh
Confidence 4778887777 55543 433222 243 33577888888886 445677777888877775522222
Q ss_pred ccccceeeeeE-EecCCcEEEEeecCCCCCCCCCCCCCCCCceeeccccccccchhhhhccCCccchhhhhhheeeEEEE
Q 004475 83 ICLNAVFGSFV-WVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVL 161 (751)
Q Consensus 83 ~~~~~~~~~~~-wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 161 (751)
.+.++. |+ +|-.|+..+.+ ....||+
T Consensus 367 -----~vlSL~~~~-~g~llat~sKD-----------------------------------------------~svilWr 393 (775)
T KOG0319|consen 367 -----AVLSLDVWS-SGDLLATGSKD-----------------------------------------------KSVILWR 393 (775)
T ss_pred -----heeeeeecc-cCcEEEEecCC-----------------------------------------------ceEEEEE
Confidence 244444 53 56555555432 1246777
Q ss_pred EcC-CCC---ceecCCC-ceEEeeeeCCCCceEEEEEecCCcccccccCCCceeEEEEeCCCceeeeeccCCCCCCCCCc
Q 004475 162 GSL-DGT---AKDFGTP-AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVC 236 (751)
Q Consensus 162 ~~~-~G~---~~~lt~~-~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~ 236 (751)
++- .++ ..+.+.+ ..+..++.+.-|-.++++... ...+-+|++...+...- ...+.. -..
T Consensus 394 ~~~~~~~~~~~a~~~gH~~svgava~~~~~asffvsvS~------------D~tlK~W~l~~s~~~~~-~~~~~~--~~t 458 (775)
T KOG0319|consen 394 LNNNCSKSLCVAQANGHTNSVGAVAGSKLGASFFVSVSQ------------DCTLKLWDLPKSKETAF-PIVLTC--RYT 458 (775)
T ss_pred ecCCcchhhhhhhhcccccccceeeecccCccEEEEecC------------CceEEEecCCCcccccc-cceehh--hHH
Confidence 743 221 2233334 667788888888776665433 34566777764221110 000000 000
Q ss_pred cCCccCCCceeeeecCCCceEEEEEeccCCCCccccCcccceeeccCCCCCCCCceEeEeeceeEE-EEEecCCceEEEe
Q 004475 237 YNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFS-VSWCDDSLALVNE 315 (751)
Q Consensus 237 ~~~~~~~~~~~~~spdG~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~-~~~spdg~~l~~~ 315 (751)
.......+.+++.+|+.+- |+-.+ .| ...-+++++ .......+..+...+. +.|||..+.++..
T Consensus 459 ~~aHdKdIN~Vaia~ndkL-iAT~S-qD-----------ktaKiW~le--~~~l~~vLsGH~RGvw~V~Fs~~dq~laT~ 523 (775)
T KOG0319|consen 459 ERAHDKDINCVAIAPNDKL-IATGS-QD-----------KTAKIWDLE--QLRLLGVLSGHTRGVWCVSFSKNDQLLATC 523 (775)
T ss_pred HHhhcccccceEecCCCce-EEecc-cc-----------cceeeeccc--CceEEEEeeCCccceEEEEeccccceeEec
Confidence 1223345678999999885 44433 21 223333332 1333445555555666 9999999988876
Q ss_pred eeecccceeEEEecCCCCCCcceeeeecccccccCCCCCCCeeeCCCCCEEEEeeeecCCcceEEEEccCCCCCCCCCce
Q 004475 316 TWYKTSQTRTWLVCPGSKDVAPRVLFDRVFENVYSDPGSPMMTRTSTGTNVIAKIKKENDEQIYILLNGRGFTPEGNIPF 395 (751)
Q Consensus 316 ~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~spDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 395 (751)
+. +..-.||.++ + .+-...+++....+.- ..|-.+|+.|+....++ -
T Consensus 524 Sg--D~TvKIW~is--~--fSClkT~eGH~~aVlr------a~F~~~~~qliS~~adG---------------------l 570 (775)
T KOG0319|consen 524 SG--DKTVKIWSIS--T--FSCLKTFEGHTSAVLR------ASFIRNGKQLISAGADG---------------------L 570 (775)
T ss_pred cC--CceEEEEEec--c--ceeeeeecCccceeEe------eeeeeCCcEEEeccCCC---------------------c
Confidence 63 2234566554 4 2222333332222221 45778999988877432 6
Q ss_pred eEEEecCCCceeE
Q 004475 396 LDLFDINTGSKER 408 (751)
Q Consensus 396 l~~~d~~~g~~~~ 408 (751)
|.+|+.++++-.+
T Consensus 571 iKlWnikt~eC~~ 583 (775)
T KOG0319|consen 571 IKLWNIKTNECEM 583 (775)
T ss_pred EEEEeccchhhhh
Confidence 8889999887643
No 359
>PF00151 Lipase: Lipase; InterPro: IPR013818 Triglyceride lipases (3.1.1.3 from EC) are lipolytic enzymes that hydrolyse ester linkages of triglycerides []. Lipases are widely distributed in animals, plants and prokaryotes. At least three tissue-specific isozymes exist in higher vertebrates, pancreatic, hepatic and gastric/lingual. These lipases are closely related to each other and to lipoprotein lipase (3.1.1.34 from EC), which hydrolyses triglycerides of chylomicrons and very low density lipoproteins (VLDL) []. The most conserved region in all these proteins is centred around a serine residue which has been shown [] to participate, with an histidine and an aspartic acid residue, in a charge relay system. Such a region is also present in lipases of prokaryotic origin and in lecithin-cholesterol acyltransferase (2.3.1.43 from EC) (LCAT) [], which catalyzes fatty acid transfer between phosphatidylcholine and cholesterol.; PDB: 1LPB_B 1LPA_B 1N8S_A 1GPL_A 1W52_X 2PVS_B 2OXE_B 1BU8_A 2PPL_A 1ETH_A ....
Probab=97.33 E-value=0.00029 Score=71.63 Aligned_cols=112 Identities=11% Similarity=-0.038 Sum_probs=61.2
Q ss_pred CccEEEEEcCCCCcCcccCCcccCCCCccCCCCchHHHHHHh---CCeEEEEcCCCCCCCCCCCCCCchhHHHHHHHHHH
Q 004475 511 PLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLA---RRFAVLAGPSIPIIGEGDKLPNDRFVEQLVSSAEA 587 (751)
Q Consensus 511 ~~P~vv~~HGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~G~~v~~~~~~~~~g~g~~~~~~~~~~~~~~d~~~ 587 (751)
..|++|++||-. +.. ....|.......+.. ..+.|+.+|....... .............+.+..
T Consensus 70 ~~pt~iiiHGw~-----------~~~-~~~~~~~~~~~all~~~~~d~NVI~VDWs~~a~~-~Y~~a~~n~~~vg~~la~ 136 (331)
T PF00151_consen 70 SKPTVIIIHGWT-----------GSG-SSESWIQDMIKALLQKDTGDYNVIVVDWSRGASN-NYPQAVANTRLVGRQLAK 136 (331)
T ss_dssp TSEEEEEE--TT------------TT--TTTHHHHHHHHHHCC--S-EEEEEEE-HHHHSS--HHHHHHHHHHHHHHHHH
T ss_pred CCCeEEEEcCcC-----------Ccc-cchhHHHHHHHHHHhhccCCceEEEEcchhhccc-cccchhhhHHHHHHHHHH
Confidence 379999999941 111 011222233333444 4899998666211110 000000112233456667
Q ss_pred HHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCC--ceeEEEEccCC
Q 004475 588 AVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPH--LFCCGIARSGS 635 (751)
Q Consensus 588 ~v~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~p~--~~~~~v~~~~~ 635 (751)
.+++|.....++.++|.|+|||+||++|..++..... ++..+..+.|.
T Consensus 137 ~l~~L~~~~g~~~~~ihlIGhSLGAHvaG~aG~~~~~~~ki~rItgLDPA 186 (331)
T PF00151_consen 137 FLSFLINNFGVPPENIHLIGHSLGAHVAGFAGKYLKGGGKIGRITGLDPA 186 (331)
T ss_dssp HHHHHHHHH---GGGEEEEEETCHHHHHHHHHHHTTT---SSEEEEES-B
T ss_pred HHHHHHhhcCCChhHEEEEeeccchhhhhhhhhhccCcceeeEEEecCcc
Confidence 7777775556788999999999999999999887755 68888888775
No 360
>KOG4328 consensus WD40 protein [Function unknown]
Probab=97.32 E-value=0.19 Score=51.03 Aligned_cols=171 Identities=10% Similarity=0.053 Sum_probs=89.2
Q ss_pred eEEEEEcCCC-Cceec--C--CCceEEeeeeCCCCceEEEEEecCCcccccccCCCceeEEEEeCCCce--eeeeccCCC
Q 004475 157 AQLVLGSLDG-TAKDF--G--TPAVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKL--VRELCDLPP 229 (751)
Q Consensus 157 ~~l~~~~~~G-~~~~l--t--~~~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~--~~~l~~~~~ 229 (751)
+.|.++|+.+ .-..+ + +...+....++.+...+++..+-. .+.+||+.++. ...+.-+
T Consensus 257 GtiR~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G-------------~f~~iD~R~~~s~~~~~~lh-- 321 (498)
T KOG4328|consen 257 GTIRLQDFEGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVG-------------NFNVIDLRTDGSEYENLRLH-- 321 (498)
T ss_pred ceeeeeeecchhhHHHhhcCccceeeeeccccCCCccEEEeeccc-------------ceEEEEeecCCccchhhhhh--
Confidence 4677777754 22212 1 125667888998888888764331 34567765432 2222111
Q ss_pred CCCCCCccCCccCCCceeeeecCCCceEEEEEeccCCCCccccCcccceeeccCCCCCCCCceEeEe--eceeEE-EEEe
Q 004475 230 AEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHK--LDLRFS-VSWC 306 (751)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~spdG~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~--~~~~~~-~~~s 306 (751)
..-++.++++|-..++++-++ .+..+.+||+-...+...-.|.. +...+. +.||
T Consensus 322 -----------~kKI~sv~~NP~~p~~laT~s------------~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFS 378 (498)
T KOG4328|consen 322 -----------KKKITSVALNPVCPWFLATAS------------LDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFS 378 (498)
T ss_pred -----------hcccceeecCCCCchheeecc------------cCcceeeeehhhhcCCCCcceecccccceeeeeEEc
Confidence 123568899999998444332 22344455542221222112332 334455 8899
Q ss_pred cCCceEEEeeeecccceeEEEec-CCCCCCccee-eeecccccccCCCCCCCeeeCCCCCEEEEee
Q 004475 307 DDSLALVNETWYKTSQTRTWLVC-PGSKDVAPRV-LFDRVFENVYSDPGSPMMTRTSTGTNVIAKI 370 (751)
Q Consensus 307 pdg~~l~~~~~~~~~~~~l~~~~-~~~~~~~~~~-l~~~~~~~~~~~~~~~~~~~spDG~~l~~~~ 370 (751)
|+|..|+.... ....+||-.. +... ..+.. +........|..+.. -.|.||-..|+...
T Consensus 379 Ps~gtl~TT~~--D~~IRv~dss~~sa~-~~p~~~I~Hn~~t~RwlT~fK--A~W~P~~~li~vg~ 439 (498)
T KOG4328|consen 379 PSGGTLLTTCQ--DNEIRVFDSSCISAK-DEPLGTIPHNNRTGRWLTPFK--AAWDPDYNLIVVGR 439 (498)
T ss_pred CCCCceEeecc--CCceEEeeccccccc-CCccceeeccCcccccccchh--heeCCCccEEEEec
Confidence 99999776552 2234555542 1111 12222 333333334444444 44999887777665
No 361
>PRK02888 nitrous-oxide reductase; Validated
Probab=97.29 E-value=0.011 Score=63.67 Aligned_cols=202 Identities=12% Similarity=0.037 Sum_probs=104.4
Q ss_pred CCCceEEEEEecCCcccccccCCCceeEEEEeCCCceeeeeccCCCCCCCC-CccC-Ccc-C-----CCceeeeecCCCc
Q 004475 184 PDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIP-VCYN-SVR-E-----GMRSISWRADKPS 255 (751)
Q Consensus 184 pDG~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~-~~~~-~~~-~-----~~~~~~~spdG~~ 255 (751)
-|||+|++.... +.++-+++++.=+..++...|-....- .++. ..+ . +...+=++|||+.
T Consensus 139 ydGr~~findk~------------n~Rvari~l~~~~~~~i~~iPn~~~~Hg~~~~~~p~t~yv~~~~e~~~PlpnDGk~ 206 (635)
T PRK02888 139 YDGRYLFINDKA------------NTRVARIRLDVMKCDKITELPNVQGIHGLRPQKIPRTGYVFCNGEFRIPLPNDGKD 206 (635)
T ss_pred cceeEEEEecCC------------CcceEEEECccEeeceeEeCCCccCccccCccccCCccEEEeCcccccccCCCCCE
Confidence 489999886433 345667777654444444444222210 0111 111 1 1234566788876
Q ss_pred eEEEEEeccCCCCccccCcccceeeccCCCCCCCCceEeEeeceeEE-EEEecCCceEEEeeeecccceeEEEecCCCCC
Q 004475 256 TLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFS-VSWCDDSLALVNETWYKTSQTRTWLVCPGSKD 334 (751)
Q Consensus 256 ~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~-~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~ 334 (751)
+.-.+ ..++.+..+|.+ ..+...-....+... ..++|||++++.++-.......+-.++....
T Consensus 207 -l~~~~-----------ey~~~vSvID~e---tmeV~~qV~Vdgnpd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~- 270 (635)
T PRK02888 207 -LDDPK-----------KYRSLFTAVDAE---TMEVAWQVMVDGNLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAER- 270 (635)
T ss_pred -eeccc-----------ceeEEEEEEECc---cceEEEEEEeCCCcccceECCCCCEEEEeccCcccCcceeeeccccC-
Confidence 32211 134567777764 222111112233445 7899999998776522222345555555332
Q ss_pred CcceeeeecccccccCCCCCCCeeeCCCCCEEEEeeeecCCcceEEEEccCCCCCCCCCceeEEEecCC----C-ceeEE
Q 004475 335 VAPRVLFDRVFENVYSDPGSPMMTRTSTGTNVIAKIKKENDEQIYILLNGRGFTPEGNIPFLDLFDINT----G-SKERI 409 (751)
Q Consensus 335 ~~~~~l~~~~~~~~~~~~~~~~~~~spDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~----g-~~~~l 409 (751)
.....++.... -.+.+||+...+.. .++.++|..+ + +....
T Consensus 271 -d~~vvfni~~i----------ea~vkdGK~~~V~g-----------------------n~V~VID~~t~~~~~~~v~~y 316 (635)
T PRK02888 271 -DWVVVFNIARI----------EEAVKAGKFKTIGG-----------------------SKVPVVDGRKAANAGSALTRY 316 (635)
T ss_pred -ceEEEEchHHH----------HHhhhCCCEEEECC-----------------------CEEEEEECCccccCCcceEEE
Confidence 11122211110 23677888766532 1567778776 2 22222
Q ss_pred eeccchhhhhceeeeecCCcceeeccCCCEEEEEEecCCCCCeEEEEEcCCCc
Q 004475 410 WESNREKYFETAVALVFGQGEEDINLNQLKILTSKESKTEITQYHILSWPLKK 462 (751)
Q Consensus 410 ~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~l~~~~~~~g~ 462 (751)
.... ..++.+++||||++++.+... .+.+.++|+...+
T Consensus 317 IPVG------------KsPHGV~vSPDGkylyVankl---S~tVSVIDv~k~k 354 (635)
T PRK02888 317 VPVP------------KNPHGVNTSPDGKYFIANGKL---SPTVTVIDVRKLD 354 (635)
T ss_pred EECC------------CCccceEECCCCCEEEEeCCC---CCcEEEEEChhhh
Confidence 2221 224557999999999887532 3458888886643
No 362
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=97.28 E-value=0.066 Score=58.64 Aligned_cols=101 Identities=17% Similarity=0.179 Sum_probs=64.3
Q ss_pred ccceeecCCCCeEEEEEeecccccccCCceeEEEEEcCC--CCee--eccCCCCccccceeeeeEEecCCcEEEEeecCC
Q 004475 33 INFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAET--GEAK--PLFESPDICLNAVFGSFVWVNNSTLLIFTIPSS 108 (751)
Q Consensus 33 ~~~p~~SPDG~~iaf~~~~~~~~~~~~~~~~l~i~~~~~--g~~~--~lt~~~~~~~~~~~~~~~wspDg~~l~~~~~~~ 108 (751)
..-.++||.++++|-. +..++|.++.--+ ++.. ++.+... ..+..++||+||.+|+-..
T Consensus 208 ~t~~~~spn~~~~Aa~----------d~dGrI~vw~d~~~~~~~~t~t~lHWH~----~~V~~L~fS~~G~~LlSGG--- 270 (792)
T KOG1963|consen 208 ITCVALSPNERYLAAG----------DSDGRILVWRDFGSSDDSETCTLLHWHH----DEVNSLSFSSDGAYLLSGG--- 270 (792)
T ss_pred ceeEEeccccceEEEe----------ccCCcEEEEeccccccccccceEEEecc----cccceeEEecCCceEeecc---
Confidence 3558999999999985 2235566666433 2211 1112221 1367899999999988651
Q ss_pred CCCCCCCCCCCCCCceeeccccccccchhhhhccCCccchhhhhhheeeEEEEEcC-CCCceecCCC-ceEEeeeeCCCC
Q 004475 109 RRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DGTAKDFGTP-AVYTAVEPSPDQ 186 (751)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~G~~~~lt~~-~~~~~~~~SpDG 186 (751)
....|.++.+ +++.+-|..- ..+..+.+||||
T Consensus 271 ----------------------------------------------~E~VLv~Wq~~T~~kqfLPRLgs~I~~i~vS~ds 304 (792)
T KOG1963|consen 271 ----------------------------------------------REGVLVLWQLETGKKQFLPRLGSPILHIVVSPDS 304 (792)
T ss_pred ----------------------------------------------cceEEEEEeecCCCcccccccCCeeEEEEEcCCC
Confidence 1156777777 6664444333 667899999999
Q ss_pred ceEEEEEecC
Q 004475 187 KYVLITSMHR 196 (751)
Q Consensus 187 ~~i~~~~~~~ 196 (751)
....+...++
T Consensus 305 ~~~sl~~~DN 314 (792)
T KOG1963|consen 305 DLYSLVLEDN 314 (792)
T ss_pred CeEEEEecCc
Confidence 8777665544
No 363
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=97.28 E-value=0.018 Score=56.62 Aligned_cols=139 Identities=12% Similarity=0.204 Sum_probs=83.7
Q ss_pred eEEEEEcC-CC----CceecCCC-ceEEeeeeCCCCceEEEEEecCCcccccccCCCceeEEEEeCCCcee-eeeccCCC
Q 004475 157 AQLVLGSL-DG----TAKDFGTP-AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLV-RELCDLPP 229 (751)
Q Consensus 157 ~~l~~~~~-~G----~~~~lt~~-~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~-~~l~~~~~ 229 (751)
..|+++.. +| ..++++.+ ..+.++.|||..+-++++..- ...|.+||...+.. ..+..
T Consensus 234 ~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~------------DgsIrIWDiRs~~~~~~~~~--- 298 (440)
T KOG0302|consen 234 KGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSC------------DGSIRIWDIRSGPKKAAVST--- 298 (440)
T ss_pred cceEeeeeccCceeecCccccccccchhhhccCCccCceEEeeec------------CceEEEEEecCCCccceeEe---
Confidence 35666655 55 34566666 788899999999988876543 34688999976522 12211
Q ss_pred CCCCCCccCCccCCCceeeeecCCCceEEEEEeccCCCCccccCcccceeeccCCCCCCCCce-EeEeeceeEE-EEEec
Q 004475 230 AEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPE-ILHKLDLRFS-VSWCD 307 (751)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~spdG~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~-~l~~~~~~~~-~~~sp 307 (751)
.+....+.-++|+.+-.. |+.-. ..+.+.++|+.....+.+. ....+...+. +.|+|
T Consensus 299 --------kAh~sDVNVISWnr~~~l-LasG~------------DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p 357 (440)
T KOG0302|consen 299 --------KAHNSDVNVISWNRREPL-LASGG------------DDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHP 357 (440)
T ss_pred --------eccCCceeeEEccCCcce-eeecC------------CCceEEEEEhhhccCCCcceeEEeccCCeeEEEecc
Confidence 122223456788877662 44421 3367778887544444433 3445566777 99998
Q ss_pred CCceEEEeeeecccceeEEEecCCC
Q 004475 308 DSLALVNETWYKTSQTRTWLVCPGS 332 (751)
Q Consensus 308 dg~~l~~~~~~~~~~~~l~~~~~~~ 332 (751)
.-..++..+. ...+..||-+.++-
T Consensus 358 ~e~s~iaasg-~D~QitiWDlsvE~ 381 (440)
T KOG0302|consen 358 HEDSVIAASG-EDNQITIWDLSVEA 381 (440)
T ss_pred ccCceEEecc-CCCcEEEEEeeccC
Confidence 8766544442 23345677665544
No 364
>PF07082 DUF1350: Protein of unknown function (DUF1350); InterPro: IPR010765 This family consists of several hypothetical proteins from both cyanobacteria and plants. Members of this family are typically around 250 residues in length. The function of this family is unknown but the species distribution indicates that the family may be involved in photosynthesis.
Probab=97.25 E-value=0.0025 Score=60.06 Aligned_cols=190 Identities=16% Similarity=0.165 Sum_probs=99.6
Q ss_pred EEEEEcCCCCCCCCCCCccEEEEEcCCCCcCcccCCcccCCCCccCCCCchHHHHHHhCCeEEEEcCCCCCCCCCCCCCC
Q 004475 495 TATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGPSIPIIGEGDKLPN 574 (751)
Q Consensus 495 ~~~~~~P~~~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~v~~~~~~~~~g~g~~~~~ 574 (751)
.+|+..|++ |. .||.+-||.+. ...|.-.+ ..+...|+++||+|++.+|.. .+.+
T Consensus 7 ~~wvl~P~~-------P~-gvihFiGGaf~--------ga~P~itY---r~lLe~La~~Gy~ViAtPy~~------tfDH 61 (250)
T PF07082_consen 7 GSWVLIPPR-------PK-GVIHFIGGAFV--------GAAPQITY---RYLLERLADRGYAVIATPYVV------TFDH 61 (250)
T ss_pred CcEEEeCCC-------CC-EEEEEcCccee--------ccCcHHHH---HHHHHHHHhCCcEEEEEecCC------CCcH
Confidence 346667754 22 56666676432 22333332 245668889999999955521 1222
Q ss_pred chhHHHHHHHHHHHHHHHHHcCCCCC--CcEEEEEeChHHHHHHHHHHhCCCceeEEEEccCC--CCCCCCccC--cccc
Q 004475 575 DRFVEQLVSSAEAAVEEVVRRGVADP--SRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGS--YNKTLTPFG--FQTE 648 (751)
Q Consensus 575 ~~~~~~~~~d~~~~v~~l~~~~~id~--~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~--~d~~~~~~~--~~~~ 648 (751)
........+....+++.|.++..++. -+++-+|||+|+-+-+.+....+..-++-++++-. ......+.. +...
T Consensus 62 ~~~A~~~~~~f~~~~~~L~~~~~~~~~~lP~~~vGHSlGcklhlLi~s~~~~~r~gniliSFNN~~a~~aIP~~~~l~~~ 141 (250)
T PF07082_consen 62 QAIAREVWERFERCLRALQKRGGLDPAYLPVYGVGHSLGCKLHLLIGSLFDVERAGNILISFNNFPADEAIPLLEQLAPA 141 (250)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCcccCCeeeeecccchHHHHHHhhhccCcccceEEEecCChHHHhhCchHhhhccc
Confidence 33344556777788888877654443 36888999999999998887764333444444321 000001110 0000
Q ss_pred -cccchhhHHHHHhcCcccccCCCCCCEEEEEcCCCCCCCCChHHHHHHHHHHHhC-CCcEEEEEeCCCCCc
Q 004475 649 -FRTLWEATNVYIEMSPITHANKIKKPILIIHGEVDDKVGLFPMQAERFFDALKGH-GALSRLVLLPFEHHV 718 (751)
Q Consensus 649 -~~~~~~~~~~~~~~~~~~~~~~~~~P~li~~G~~D~~vp~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~H~ 718 (751)
...+.+.++.-... ++.--.+ .-.|+|.=.+|. .+++..+.+.|+.. ...++....|| +|.
T Consensus 142 l~~EF~PsP~ET~~l--i~~~Y~~-~rnLLIkF~~D~-----iDqt~~L~~~L~~r~~~~~~~~~L~G-~HL 204 (250)
T PF07082_consen 142 LRLEFTPSPEETRRL--IRESYQV-RRNLLIKFNDDD-----IDQTDELEQILQQRFPDMVSIQTLPG-NHL 204 (250)
T ss_pred cccCccCCHHHHHHH--HHHhcCC-ccceEEEecCCC-----ccchHHHHHHHhhhccccceEEeCCC-CCC
Confidence 00111111111100 0000012 235666666666 46677788888754 23466777875 685
No 365
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=97.24 E-value=0.034 Score=54.69 Aligned_cols=134 Identities=13% Similarity=0.142 Sum_probs=79.3
Q ss_pred eEEEEEcCCC-C----ceec-CCCceEEeeeeCCCCceEEEEEecCCcccccccCCCceeEEEEeCCCceeeeeccCCCC
Q 004475 157 AQLVLGSLDG-T----AKDF-GTPAVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPA 230 (751)
Q Consensus 157 ~~l~~~~~~G-~----~~~l-t~~~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~ 230 (751)
.+||++|+.- + +... .++.++..++.++.+-+|+|-... -..++++||+.+-+....
T Consensus 106 e~IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~-----------t~GdV~l~d~~nl~~v~~------ 168 (391)
T KOG2110|consen 106 ESIYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCYLAYPGST-----------TSGDVVLFDTINLQPVNT------ 168 (391)
T ss_pred ccEEEEecccceeehhhhccCCCccceEeeccCCCCceEEecCCC-----------CCceEEEEEcccceeeeE------
Confidence 4799999844 2 1222 122567777788888899996332 157899999876543211
Q ss_pred CCCCCccCCccCCCceeeeecCCCceEEEEEeccCCCCccccCccc-ceeeccCCCCCCCCceEeEee--ceeEE-EEEe
Q 004475 231 EDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRD-IIYTQPAEPAEGEKPEILHKL--DLRFS-VSWC 306 (751)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~spdG~~~i~~~~~~~~~~~~~~~~~~~-~l~~~~~~~~~~~~~~~l~~~--~~~~~-~~~s 306 (751)
+......+-.++|||||.. |+-++ .++ .|.++.+. +|....+...+ ...+. ++||
T Consensus 169 ------I~aH~~~lAalafs~~G~l-lATAS------------eKGTVIRVf~v~--~G~kl~eFRRG~~~~~IySL~Fs 227 (391)
T KOG2110|consen 169 ------INAHKGPLAALAFSPDGTL-LATAS------------EKGTVIRVFSVP--EGQKLYEFRRGTYPVSIYSLSFS 227 (391)
T ss_pred ------EEecCCceeEEEECCCCCE-EEEec------------cCceEEEEEEcC--CccEeeeeeCCceeeEEEEEEEC
Confidence 1222333558999999997 66654 233 34444442 13333333322 22344 8999
Q ss_pred cCCceEEEeeeecccceeEEEecC
Q 004475 307 DDSLALVNETWYKTSQTRTWLVCP 330 (751)
Q Consensus 307 pdg~~l~~~~~~~~~~~~l~~~~~ 330 (751)
||++.|..+++. ..-+||.++.
T Consensus 228 ~ds~~L~~sS~T--eTVHiFKL~~ 249 (391)
T KOG2110|consen 228 PDSQFLAASSNT--ETVHIFKLEK 249 (391)
T ss_pred CCCCeEEEecCC--CeEEEEEecc
Confidence 999999887743 2345555543
No 366
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=97.22 E-value=0.02 Score=60.84 Aligned_cols=69 Identities=13% Similarity=0.140 Sum_probs=49.2
Q ss_pred CcccccceeecCCCCeEEEEEeecccccccCCceeEEEEEcCCCCeee-ccCCCCccccceeeeeEEecCCcEEEEeecC
Q 004475 29 DGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKP-LFESPDICLNAVFGSFVWVNNSTLLIFTIPS 107 (751)
Q Consensus 29 ~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~~~~~l~i~~~~~g~~~~-lt~~~~~~~~~~~~~~~wspDg~~l~~~~~~ 107 (751)
.+..+...+.||+|..||-..+ +......-|++++..+-...+ | ..+.+ ++..++|||||++|+..+.+
T Consensus 524 HGyEv~~l~~s~~gnliASaCK-----S~~~ehAvI~lw~t~~W~~~~~L---~~HsL--TVT~l~FSpdg~~LLsvsRD 593 (764)
T KOG1063|consen 524 HGYEVYALAISPTGNLIASACK-----SSLKEHAVIRLWNTANWLQVQEL---EGHSL--TVTRLAFSPDGRYLLSVSRD 593 (764)
T ss_pred CceeEEEEEecCCCCEEeehhh-----hCCccceEEEEEeccchhhhhee---cccce--EEEEEEECCCCcEEEEeecC
Confidence 3446888999999999999774 222445788999976644333 4 33322 47899999999999988654
No 367
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=97.22 E-value=0.11 Score=57.05 Aligned_cols=101 Identities=15% Similarity=0.139 Sum_probs=59.2
Q ss_pred EEEecCCceEEEeeeecccceeEEEecCCCCCCcceeeeecccccccCCCCCCCeeeCCCCCEEEEeeeecCCcceEEEE
Q 004475 303 VSWCDDSLALVNETWYKTSQTRTWLVCPGSKDVAPRVLFDRVFENVYSDPGSPMMTRTSTGTNVIAKIKKENDEQIYILL 382 (751)
Q Consensus 303 ~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~spDG~~l~~~~~~~~~~~~~~~~ 382 (751)
.++||.+++++.+.. ++.-.+|.---.......-++..-....+.. ++||+||.+|+....+
T Consensus 211 ~~~spn~~~~Aa~d~--dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~------L~fS~~G~~LlSGG~E---------- 272 (792)
T KOG1963|consen 211 VALSPNERYLAAGDS--DGRILVWRDFGSSDDSETCTLLHWHHDEVNS------LSFSSDGAYLLSGGRE---------- 272 (792)
T ss_pred EEeccccceEEEecc--CCcEEEEeccccccccccceEEEecccccce------eEEecCCceEeecccc----------
Confidence 789999998876552 2334444422211212222333333333333 8899999999877643
Q ss_pred ccCCCCCCCCCceeEEEecCCCceeEEeeccchhhhhceeeeecCCcceeeccCCCEEEEEE
Q 004475 383 NGRGFTPEGNIPFLDLFDINTGSKERIWESNREKYFETAVALVFGQGEEDINLNQLKILTSK 444 (751)
Q Consensus 383 ~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~ 444 (751)
..|.+|.+++++.+-|...... .. .+.+|||+.......
T Consensus 273 -----------~VLv~Wq~~T~~kqfLPRLgs~-----I~-------~i~vS~ds~~~sl~~ 311 (792)
T KOG1963|consen 273 -----------GVLVLWQLETGKKQFLPRLGSP-----IL-------HIVVSPDSDLYSLVL 311 (792)
T ss_pred -----------eEEEEEeecCCCcccccccCCe-----eE-------EEEEcCCCCeEEEEe
Confidence 3789999999886555443321 11 146778887655543
No 368
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.22 E-value=0.016 Score=53.88 Aligned_cols=232 Identities=11% Similarity=0.105 Sum_probs=131.4
Q ss_pred cceeecCC-CCeEEEEEeecccccccCCceeEEEEEcCCCC-eeeccCCCCccccceeeeeEEecCCcEEEEeecCCCCC
Q 004475 34 NFVSWSPD-GKRIAFSVRVDEEDNVSSCKLRVWIADAETGE-AKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRD 111 (751)
Q Consensus 34 ~~p~~SPD-G~~iaf~~~~~~~~~~~~~~~~l~i~~~~~g~-~~~lt~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~ 111 (751)
.+..|||= -.+||...... -.-.+.+.|+|.++.+++ .+.+.+ .....++-.++||+.-+.++++...
T Consensus 12 ysvqfSPf~~nrLavAt~q~---yGl~G~G~L~ile~~~~~gi~e~~s---~d~~D~LfdV~Wse~~e~~~~~a~G---- 81 (311)
T KOG0277|consen 12 YSVQFSPFVENRLAVATAQH---YGLAGNGRLFILEVTDPKGIQECQS---YDTEDGLFDVAWSENHENQVIAASG---- 81 (311)
T ss_pred ceeEecccccchhheeehhh---cccccCceEEEEecCCCCCeEEEEe---eecccceeEeeecCCCcceEEEEec----
Confidence 46778882 12344332100 011467899999996433 333322 1222246789999987766665321
Q ss_pred CCCCCCCCCCCceeeccccccccchhhhhccCCccchhhhhhheeeEEEEEcC---CCCceecCCC-ceEEeeeeCCCCc
Q 004475 112 PPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL---DGTAKDFGTP-AVYTAVEPSPDQK 187 (751)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~---~G~~~~lt~~-~~~~~~~~SpDG~ 187 (751)
.+.|-++|+ ++.++.+.++ ..+.++.|++--+
T Consensus 82 --------------------------------------------DGSLrl~d~~~~s~Pi~~~kEH~~EV~Svdwn~~~r 117 (311)
T KOG0277|consen 82 --------------------------------------------DGSLRLFDLTMPSKPIHKFKEHKREVYSVDWNTVRR 117 (311)
T ss_pred --------------------------------------------CceEEEeccCCCCcchhHHHhhhhheEEeccccccc
Confidence 134555555 2344455556 7889999999888
Q ss_pred eEEEEEecCCcccccccCCCceeEEEEeCCCce-eeeeccCCCCCCCCCccCCccCCCceeeeecCCCceEEEEEeccCC
Q 004475 188 YVLITSMHRPYSYKVPCARFSQKVQVWTTDGKL-VRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRG 266 (751)
Q Consensus 188 ~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~-~~~l~~~~~~~~~~~~~~~~~~~~~~~~~spdG~~~i~~~~~~~~~ 266 (751)
++++++. +...|-+|+..-++ ++. |...+.-+....|||--..+++.++
T Consensus 118 ~~~ltsS------------WD~TiKLW~~~r~~Sv~T-------------f~gh~~~Iy~a~~sp~~~nlfas~S----- 167 (311)
T KOG0277|consen 118 RIFLTSS------------WDGTIKLWDPNRPNSVQT-------------FNGHNSCIYQAAFSPHIPNLFASAS----- 167 (311)
T ss_pred eeEEeec------------cCCceEeecCCCCcceEe-------------ecCCccEEEEEecCCCCCCeEEEcc-----
Confidence 8888753 24567788887443 222 2223333567899998877455544
Q ss_pred CCccccCcccceeeccCCCCCCCCceEeEeeceeEE-EEEecCCceEEEeeeecccceeEEEecCCCCCCcceeeeeccc
Q 004475 267 DANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFS-VSWCDDSLALVNETWYKTSQTRTWLVCPGSKDVAPRVLFDRVF 345 (751)
Q Consensus 267 ~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~-~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~ 345 (751)
..+.+.++|+. . .++...|...+..+. .-|+.-...++++... ...|...|+..- . +.+.....
T Consensus 168 -------gd~~l~lwdvr-~-~gk~~~i~ah~~Eil~cdw~ky~~~vl~Tg~v---d~~vr~wDir~~-r--~pl~eL~g 232 (311)
T KOG0277|consen 168 -------GDGTLRLWDVR-S-PGKFMSIEAHNSEILCCDWSKYNHNVLATGGV---DNLVRGWDIRNL-R--TPLFELNG 232 (311)
T ss_pred -------CCceEEEEEec-C-CCceeEEEeccceeEeecccccCCcEEEecCC---CceEEEEehhhc-c--ccceeecC
Confidence 33566777764 2 234444655555555 7898877777776632 234555555442 1 22222221
Q ss_pred c--cccCCCCCCCeeeCCCCCEEEEee
Q 004475 346 E--NVYSDPGSPMMTRTSTGTNVIAKI 370 (751)
Q Consensus 346 ~--~~~~~~~~~~~~~spDG~~l~~~~ 370 (751)
+ .+.. +.|||-...|+..+
T Consensus 233 h~~AVRk------vk~Sph~~~lLaSa 253 (311)
T KOG0277|consen 233 HGLAVRK------VKFSPHHASLLASA 253 (311)
T ss_pred CceEEEE------EecCcchhhHhhhc
Confidence 1 1222 67898877666555
No 369
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=97.22 E-value=0.013 Score=61.02 Aligned_cols=158 Identities=12% Similarity=0.118 Sum_probs=90.3
Q ss_pred ecCCCceEEeeeeCCCCceEEEEEecCCcccccccCCCceeEEEEeCCCceeeeeccCCCCCCCCCccCCccCCCceeee
Q 004475 170 DFGTPAVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISW 249 (751)
Q Consensus 170 ~lt~~~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (751)
.|.....+..+.|..+|.||+....... +..+.+..+.....+ .++. -....+..+.|
T Consensus 517 ~I~~~k~i~~vtWHrkGDYlatV~~~~~----------~~~VliHQLSK~~sQ----~PF~--------kskG~vq~v~F 574 (733)
T KOG0650|consen 517 VIKHPKSIRQVTWHRKGDYLATVMPDSG----------NKSVLIHQLSKRKSQ----SPFR--------KSKGLVQRVKF 574 (733)
T ss_pred EEecCCccceeeeecCCceEEEeccCCC----------cceEEEEeccccccc----Cchh--------hcCCceeEEEe
Confidence 3444477889999999999999865432 345677776543222 1211 11122347799
Q ss_pred ecCCCceEEEEEeccCCCCccccCcccceeeccCCCCCCCCceEeEeeceeEE-EEEecCCceEEEeeeecccceeEEEe
Q 004475 250 RADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFS-VSWCDDSLALVNETWYKTSQTRTWLV 328 (751)
Q Consensus 250 spdG~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~-~~~spdg~~l~~~~~~~~~~~~l~~~ 328 (751)
+|-..+ ++++. +..+.++++.. ....+.+..+..-++ ++.+|.|.-|+.++. ...+.-+
T Consensus 575 HPs~p~-lfVaT-------------q~~vRiYdL~k--qelvKkL~tg~kwiS~msihp~GDnli~gs~----d~k~~Wf 634 (733)
T KOG0650|consen 575 HPSKPY-LFVAT-------------QRSVRIYDLSK--QELVKKLLTGSKWISSMSIHPNGDNLILGSY----DKKMCWF 634 (733)
T ss_pred cCCCce-EEEEe-------------ccceEEEehhH--HHHHHHHhcCCeeeeeeeecCCCCeEEEecC----CCeeEEE
Confidence 999998 44433 24566777631 223455556666677 899999999887662 2344445
Q ss_pred cCCCCCCccee-e--eecccccccCCCCCCCe-eeCCCCCEEEEee
Q 004475 329 CPGSKDVAPRV-L--FDRVFENVYSDPGSPMM-TRTSTGTNVIAKI 370 (751)
Q Consensus 329 ~~~~~~~~~~~-l--~~~~~~~~~~~~~~~~~-~~spDG~~l~~~~ 370 (751)
|++-. ..+-+ | .......+..++-.|.+ +-|+||..++|-.
T Consensus 635 Dldls-skPyk~lr~H~~avr~Va~H~ryPLfas~sdDgtv~Vfhg 679 (733)
T KOG0650|consen 635 DLDLS-SKPYKTLRLHEKAVRSVAFHKRYPLFASGSDDGTVIVFHG 679 (733)
T ss_pred EcccC-cchhHHhhhhhhhhhhhhhccccceeeeecCCCcEEEEee
Confidence 66543 22221 2 11122222222223323 3578898888866
No 370
>PTZ00472 serine carboxypeptidase (CBP1); Provisional
Probab=97.20 E-value=0.004 Score=66.86 Aligned_cols=141 Identities=11% Similarity=0.047 Sum_probs=78.6
Q ss_pred CceEEEEEEcCCCCCCCCCCCccEEEEEcCCCCcCcccCCccc-CCCCccCCCC---chHHHHHHhCCeEEEEcCCCCCC
Q 004475 491 GVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVR-GSPNEFSGMT---PTSSLIFLARRFAVLAGPSIPII 566 (751)
Q Consensus 491 ~~~i~~~~~~P~~~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~-~~~~~~~~~~---~~~~~~~~~~G~~v~~~~~~~~~ 566 (751)
+..+..|++...+ ++ ...|+||+++|||..+.- .+.+. .+|-....-. ......+...+..++. |.+-..
T Consensus 60 ~~~lFyw~~~s~~-~~---~~~Pl~lwlnGGPG~ss~-~G~f~E~GP~~i~~~~~~~~~n~~sW~~~~~~l~i-DqP~G~ 133 (462)
T PTZ00472 60 DKHYFYWAFGPRN-GN---PEAPVLLWMTGGPGCSSM-FALLAENGPCLMNETTGDIYNNTYSWNNEAYVIYV-DQPAGV 133 (462)
T ss_pred CceEEEEEEEcCC-CC---CCCCEEEEECCCCcHHHH-HhhhccCCCeEEeCCCCceeECCcccccccCeEEE-eCCCCc
Confidence 4567777776543 22 237999999999755431 11111 1111111100 0011123334444443 443344
Q ss_pred CCCCCCCC--chhHHHHHHHHHHHHHHHHH-cCCCCCCcEEEEEeChHHHHHHHHHHhC----------CCceeEEEEcc
Q 004475 567 GEGDKLPN--DRFVEQLVSSAEAAVEEVVR-RGVADPSRIAVGGHSYGAFMTAHLLAHA----------PHLFCCGIARS 633 (751)
Q Consensus 567 g~g~~~~~--~~~~~~~~~d~~~~v~~l~~-~~~id~~~i~l~G~S~GG~~a~~~a~~~----------p~~~~~~v~~~ 633 (751)
|++..... ........+|+.++++...+ .+.....++.|+|+||||..+..+|.+- +-.++++++..
T Consensus 134 G~S~~~~~~~~~~~~~~a~d~~~~l~~f~~~~p~~~~~~~~i~GeSygG~y~p~~a~~i~~~n~~~~~~~inLkGi~IGN 213 (462)
T PTZ00472 134 GFSYADKADYDHNESEVSEDMYNFLQAFFGSHEDLRANDLFVVGESYGGHYAPATAYRINMGNKKGDGLYINLAGLAVGN 213 (462)
T ss_pred CcccCCCCCCCCChHHHHHHHHHHHHHHHHhCccccCCCEEEEeecchhhhHHHHHHHHHhhccccCCceeeeEEEEEec
Confidence 55433221 22335667888888865544 3445567999999999999998887542 01378888888
Q ss_pred CCCC
Q 004475 634 GSYN 637 (751)
Q Consensus 634 ~~~d 637 (751)
|+.+
T Consensus 214 g~~d 217 (462)
T PTZ00472 214 GLTD 217 (462)
T ss_pred cccC
Confidence 8765
No 371
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.19 E-value=0.038 Score=51.22 Aligned_cols=243 Identities=15% Similarity=0.156 Sum_probs=124.2
Q ss_pred cceeEEeecCCCCCCCCcccccCCCCcc-cccceeecC--CCCeEEEEEeecccccccCCceeEEEEEcCCCCeeeccCC
Q 004475 4 FTGIGIHRLLPDDSLGPEKEVHGYPDGA-KINFVSWSP--DGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFES 80 (751)
Q Consensus 4 ~~~~~~~~~~~~~~~g~~~~l~~~~~~~-~~~~p~~SP--DG~~iaf~~~~~~~~~~~~~~~~l~i~~~~~g~~~~lt~~ 80 (751)
..-|.+..+.. .|+...+..|.+.. .+...+|.. -|..||-. .+..+|.|+.-.+|+-.++...
T Consensus 32 D~tVkIf~v~~---n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLASc----------sYDgkVIiWke~~g~w~k~~e~ 98 (299)
T KOG1332|consen 32 DGTVKIFEVRN---NGQSKLLAELTGHSGPVWKVAWAHPKFGTILASC----------SYDGKVIIWKEENGRWTKAYEH 98 (299)
T ss_pred CccEEEEEEcC---CCCceeeeEecCCCCCeeEEeecccccCcEeeEe----------ecCceEEEEecCCCchhhhhhh
Confidence 34567777765 23334444444432 567778877 78888886 4556777778777765555333
Q ss_pred CCccccceeeeeEEecCC--cEEEEeecCCCCCCCCCCCCCCCCceeeccccccccchhhhhccCCccchhhhhhheeeE
Q 004475 81 PDICLNAVFGSFVWVNNS--TLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQ 158 (751)
Q Consensus 81 ~~~~~~~~~~~~~wspDg--~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (751)
..+ ..+++.++|.|.+ -.|+..+.++ .-.
T Consensus 99 ~~h--~~SVNsV~wapheygl~LacasSDG-----------------------------------------------~vs 129 (299)
T KOG1332|consen 99 AAH--SASVNSVAWAPHEYGLLLACASSDG-----------------------------------------------KVS 129 (299)
T ss_pred hhh--cccceeecccccccceEEEEeeCCC-----------------------------------------------cEE
Confidence 222 3357889999874 4445443321 124
Q ss_pred EEEEcCCC--CceecCC-C-ceEEeeeeCCC---CceEEEEEecCCcccccccCCCceeEEEEeCCCceeeeeccCCCCC
Q 004475 159 LVLGSLDG--TAKDFGT-P-AVYTAVEPSPD---QKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAE 231 (751)
Q Consensus 159 l~~~~~~G--~~~~lt~-~-~~~~~~~~SpD---G~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~ 231 (751)
|..++-+| ...++.. + .++.+++|+|- |..+ -.... ...+..-.+.-.+.+-+|..+.++-..
T Consensus 130 vl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~g~~~-~~~~~-~~~krlvSgGcDn~VkiW~~~~~~w~~-------- 199 (299)
T KOG1332|consen 130 VLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAPGSLV-DQGPA-AKVKRLVSGGCDNLVKIWKFDSDSWKL-------- 199 (299)
T ss_pred EEEEcCCCCccchhhhhccccccceeeecCcCCCcccc-ccCcc-cccceeeccCCccceeeeecCCcchhh--------
Confidence 55555554 3334432 3 66778999987 5211 00000 000000111122344556555431110
Q ss_pred CCCCccCCccCCCceeeeecCCCceE-EEEEeccCCCCccccCcccceeeccCC-CCCCCCceEeEeeceeEE-EEEecC
Q 004475 232 DIPVCYNSVREGMRSISWRADKPSTL-YWVEAQDRGDANVEVSPRDIIYTQPAE-PAEGEKPEILHKLDLRFS-VSWCDD 308 (751)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~spdG~~~i-~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~l~~~~~~~~-~~~spd 308 (751)
...+.....-+|.++|.|.-.... ..++. ...+.++++..+ ..+.-+.+.+...+..+- ++||..
T Consensus 200 --e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~----------SqDg~viIwt~~~e~e~wk~tll~~f~~~~w~vSWS~s 267 (299)
T KOG1332|consen 200 --ERTLEGHKDWVRDVAWAPSVGLPKSTIASC----------SQDGTVIIWTKDEEYEPWKKTLLEEFPDVVWRVSWSLS 267 (299)
T ss_pred --hhhhhhcchhhhhhhhccccCCCceeeEEe----------cCCCcEEEEEecCccCcccccccccCCcceEEEEEecc
Confidence 011222334467889998753211 22221 122344444432 111123344555555566 999999
Q ss_pred CceEEEeeeecccceeEEEecCCC
Q 004475 309 SLALVNETWYKTSQTRTWLVCPGS 332 (751)
Q Consensus 309 g~~l~~~~~~~~~~~~l~~~~~~~ 332 (751)
|..|+.+. .+..-.||.=+.++
T Consensus 268 Gn~LaVs~--GdNkvtlwke~~~G 289 (299)
T KOG1332|consen 268 GNILAVSG--GDNKVTLWKENVDG 289 (299)
T ss_pred ccEEEEec--CCcEEEEEEeCCCC
Confidence 99988765 22334677766665
No 372
>PLN02733 phosphatidylcholine-sterol O-acyltransferase
Probab=97.19 E-value=0.0018 Score=68.35 Aligned_cols=87 Identities=10% Similarity=0.170 Sum_probs=60.6
Q ss_pred hHHHHHHhCCeEEEEcCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCC
Q 004475 545 TSSLIFLARRFAVLAGPSIPIIGEGDKLPNDRFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPH 624 (751)
Q Consensus 545 ~~~~~~~~~G~~v~~~~~~~~~g~g~~~~~~~~~~~~~~d~~~~v~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~p~ 624 (751)
.+...|.+.||.+- .+..|.|-...........++++.+.++.+.+... ..++.|+||||||.++..++..+|+
T Consensus 112 ~li~~L~~~GY~~~----~dL~g~gYDwR~~~~~~~~~~~Lk~lIe~~~~~~g--~~kV~LVGHSMGGlva~~fl~~~p~ 185 (440)
T PLN02733 112 DMIEQLIKWGYKEG----KTLFGFGYDFRQSNRLPETMDGLKKKLETVYKASG--GKKVNIISHSMGGLLVKCFMSLHSD 185 (440)
T ss_pred HHHHHHHHcCCccC----CCcccCCCCccccccHHHHHHHHHHHHHHHHHHcC--CCCEEEEEECHhHHHHHHHHHHCCH
Confidence 45667889999762 23444443333222234557788888888776532 3689999999999999999988876
Q ss_pred c----eeEEEEccCCCC
Q 004475 625 L----FCCGIARSGSYN 637 (751)
Q Consensus 625 ~----~~~~v~~~~~~d 637 (751)
. ++..|++++.+.
T Consensus 186 ~~~k~I~~~I~la~P~~ 202 (440)
T PLN02733 186 VFEKYVNSWIAIAAPFQ 202 (440)
T ss_pred hHHhHhccEEEECCCCC
Confidence 3 677888887654
No 373
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=97.18 E-value=0.098 Score=59.65 Aligned_cols=39 Identities=15% Similarity=0.147 Sum_probs=28.9
Q ss_pred eEEEEEcC-CCCceecCCC-ceEEeeeeCCCCceEEEEEec
Q 004475 157 AQLVLGSL-DGTAKDFGTP-AVYTAVEPSPDQKYVLITSMH 195 (751)
Q Consensus 157 ~~l~~~~~-~G~~~~lt~~-~~~~~~~~SpDG~~i~~~~~~ 195 (751)
+.|.++|. +.....++.- .++..++||||++.+++....
T Consensus 90 G~iilvd~et~~~eivg~vd~GI~aaswS~Dee~l~liT~~ 130 (1265)
T KOG1920|consen 90 GDIILVDPETLELEIVGNVDNGISAASWSPDEELLALITGR 130 (1265)
T ss_pred CcEEEEcccccceeeeeeccCceEEEeecCCCcEEEEEeCC
Confidence 46677777 4555555544 788899999999999987654
No 374
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=97.16 E-value=0.074 Score=53.72 Aligned_cols=154 Identities=10% Similarity=0.091 Sum_probs=89.1
Q ss_pred ceEEeeeeCCCCceEEEEEecCCcccccccCCCceeEEEEeCCCc--eeeeeccCCCCCCCCCccCCccCCCceeeeecC
Q 004475 175 AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGK--LVRELCDLPPAEDIPVCYNSVREGMRSISWRAD 252 (751)
Q Consensus 175 ~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~--~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~spd 252 (751)
..+.+++|.|-.+.++-+..+ .+.|.+||+.+. +.+.. .......+..++|+|=
T Consensus 228 ~~VeDV~~h~~h~~lF~sv~d------------d~~L~iwD~R~~~~~~~~~------------~~ah~~~vn~~~fnp~ 283 (422)
T KOG0264|consen 228 DVVEDVAWHPLHEDLFGSVGD------------DGKLMIWDTRSNTSKPSHS------------VKAHSAEVNCVAFNPF 283 (422)
T ss_pred cceehhhccccchhhheeecC------------CCeEEEEEcCCCCCCCccc------------ccccCCceeEEEeCCC
Confidence 556789999988887665444 457889999853 11111 1122233568999999
Q ss_pred CCceEEEEEeccCCCCccccCcccceeeccCCCCCCCCceEeEeeceeEE-EEEecCCceEEEeeeecccceeEEEecCC
Q 004475 253 KPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFS-VSWCDDSLALVNETWYKTSQTRTWLVCPG 331 (751)
Q Consensus 253 G~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~-~~~spdg~~l~~~~~~~~~~~~l~~~~~~ 331 (751)
+..+|+-.+ ..+.|.++|+-..+ .....+......+. +.|||....++.++. ..+...+|-+.--
T Consensus 284 ~~~ilAT~S------------~D~tV~LwDlRnL~-~~lh~~e~H~dev~~V~WSPh~etvLASSg-~D~rl~vWDls~i 349 (422)
T KOG0264|consen 284 NEFILATGS------------ADKTVALWDLRNLN-KPLHTFEGHEDEVFQVEWSPHNETVLASSG-TDRRLNVWDLSRI 349 (422)
T ss_pred CCceEEecc------------CCCcEEEeechhcc-cCceeccCCCcceEEEEeCCCCCceeEecc-cCCcEEEEecccc
Confidence 988444433 23578888874222 23444445566666 999999998876663 2233345544333
Q ss_pred CCC--------CcceeeeecccccccCCCCCCCeeeCCCCCEEEEee
Q 004475 332 SKD--------VAPRVLFDRVFENVYSDPGSPMMTRTSTGTNVIAKI 370 (751)
Q Consensus 332 ~~~--------~~~~~l~~~~~~~~~~~~~~~~~~~spDG~~l~~~~ 370 (751)
+.+ +.+..|+.+..+.. ...-++|.|.--+++...
T Consensus 350 g~eq~~eda~dgppEllF~HgGH~~----kV~DfsWnp~ePW~I~Sv 392 (422)
T KOG0264|consen 350 GEEQSPEDAEDGPPELLFIHGGHTA----KVSDFSWNPNEPWTIASV 392 (422)
T ss_pred ccccChhhhccCCcceeEEecCccc----ccccccCCCCCCeEEEEe
Confidence 321 11223333322210 011277899988887776
No 375
>KOG4328 consensus WD40 protein [Function unknown]
Probab=97.12 E-value=0.088 Score=53.31 Aligned_cols=230 Identities=14% Similarity=0.138 Sum_probs=135.0
Q ss_pred ceeEEeecCCCCCCCCcccccCCCCcccccceeecCCCCeEEEEEeecccccccCCceeEEEEEcCCCCeeeccCCCCcc
Q 004475 5 TGIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDIC 84 (751)
Q Consensus 5 ~~~~~~~~~~~~~~g~~~~l~~~~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~~~~~l~i~~~~~g~~~~lt~~~~~~ 84 (751)
.+|.+||+.+++++.....+ ..+.+..+....|||-..--.|.+ .+.+.|..+|++++..+.+......
T Consensus 210 G~VG~Wn~~~~~~d~d~v~~-f~~hs~~Vs~l~F~P~n~s~i~ss---------SyDGtiR~~D~~~~i~e~v~s~~~d- 278 (498)
T KOG4328|consen 210 GQVGLWNFGTQEKDKDGVYL-FTPHSGPVSGLKFSPANTSQIYSS---------SYDGTIRLQDFEGNISEEVLSLDTD- 278 (498)
T ss_pred CcEEEEecCCCCCccCceEE-eccCCccccceEecCCChhheeee---------ccCceeeeeeecchhhHHHhhcCcc-
Confidence 47899999753344433333 246667899999999887766654 5668999999998876655443211
Q ss_pred ccceeeeeEEecCCcEEEEeecCCCCCCCCCCCCCCCCceeeccccccccchhhhhccCCccchhhhhhheeeEEEEEcC
Q 004475 85 LNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL 164 (751)
Q Consensus 85 ~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 164 (751)
+..+..+.++.+...++|...- +.-+++....
T Consensus 279 -~~~fs~~d~~~e~~~vl~~~~~-----------------------------------------------G~f~~iD~R~ 310 (498)
T KOG4328|consen 279 -NIWFSSLDFSAESRSVLFGDNV-----------------------------------------------GNFNVIDLRT 310 (498)
T ss_pred -ceeeeeccccCCCccEEEeecc-----------------------------------------------cceEEEEeec
Confidence 2246677888888888877221 1124444444
Q ss_pred CC-CceecCCC-ceEEeeeeCCCCceEEEEEecCCcccccccCCCceeEEEEeCCCc--eee-eeccCCCCCCCCCccCC
Q 004475 165 DG-TAKDFGTP-AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGK--LVR-ELCDLPPAEDIPVCYNS 239 (751)
Q Consensus 165 ~G-~~~~lt~~-~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~--~~~-~l~~~~~~~~~~~~~~~ 239 (751)
.| +...+.-+ .-+..+++.|--.+++.++.. ...+.+||+..- +.. .|+..+
T Consensus 311 ~~s~~~~~~lh~kKI~sv~~NP~~p~~laT~s~------------D~T~kIWD~R~l~~K~sp~lst~~----------- 367 (498)
T KOG4328|consen 311 DGSEYENLRLHKKKITSVALNPVCPWFLATASL------------DQTAKIWDLRQLRGKASPFLSTLP----------- 367 (498)
T ss_pred CCccchhhhhhhcccceeecCCCCchheeeccc------------CcceeeeehhhhcCCCCcceeccc-----------
Confidence 55 34444444 567789999998887776544 234668887522 111 222221
Q ss_pred ccCCCceeeeecCCCceEEEEEeccCCCCccccCcccceeeccCCCC--CCCCceEeEeec---eeEE---EEEecCCce
Q 004475 240 VREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPA--EGEKPEILHKLD---LRFS---VSWCDDSLA 311 (751)
Q Consensus 240 ~~~~~~~~~~spdG~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~~~~l~~~~---~~~~---~~~spdg~~ 311 (751)
....+.+..|||+|-. |+-+. ....|.++|..-. .......|.... ..+. ..|.||-..
T Consensus 368 HrrsV~sAyFSPs~gt-l~TT~------------~D~~IRv~dss~~sa~~~p~~~I~Hn~~t~RwlT~fKA~W~P~~~l 434 (498)
T KOG4328|consen 368 HRRSVNSAYFSPSGGT-LLTTC------------QDNEIRVFDSSCISAKDEPLGTIPHNNRTGRWLTPFKAAWDPDYNL 434 (498)
T ss_pred ccceeeeeEEcCCCCc-eEeec------------cCCceEEeecccccccCCccceeeccCcccccccchhheeCCCccE
Confidence 2234557899999988 55543 2345666665100 011122222211 1122 789998887
Q ss_pred EEEeeeecccceeEEEecCCCC
Q 004475 312 LVNETWYKTSQTRTWLVCPGSK 333 (751)
Q Consensus 312 l~~~~~~~~~~~~l~~~~~~~~ 333 (751)
|+...- ...|=+++..++
T Consensus 435 i~vg~~----~r~IDv~~~~~~ 452 (498)
T KOG4328|consen 435 IVVGRY----PRPIDVFDGNGG 452 (498)
T ss_pred EEEecc----CcceeEEcCCCC
Confidence 766542 234666777664
No 376
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=97.12 E-value=0.15 Score=48.66 Aligned_cols=196 Identities=16% Similarity=0.123 Sum_probs=109.2
Q ss_pred cccceeecCCCCeEEEEEeecccccccCCceeEEEEEcCCCC-----eeeccCCCCccccceeeeeEEecCCcEEEEeec
Q 004475 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGE-----AKPLFESPDICLNAVFGSFVWVNNSTLLIFTIP 106 (751)
Q Consensus 32 ~~~~p~~SPDG~~iaf~~~~~~~~~~~~~~~~l~i~~~~~g~-----~~~lt~~~~~~~~~~~~~~~wspDg~~l~~~~~ 106 (751)
++...+=||-.++|.-+...+..+...-....||.++-+-+. ...+...+. ...+.+..+.|-|++..|+....
T Consensus 65 Evw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~Ldt-eavg~i~cvew~Pns~klasm~d 143 (370)
T KOG1007|consen 65 EVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVASLDT-EAVGKINCVEWEPNSDKLASMDD 143 (370)
T ss_pred ceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhcCCH-HHhCceeeEEEcCCCCeeEEecc
Confidence 577788889888887776532111211244677777655444 222222221 11123567899999999987632
Q ss_pred CCCCCCCCCCCCCCCCceeeccccccccchhhhhccCCccchhhhhhheeeEEEEEcC-CC-C-ceecCCC------ceE
Q 004475 107 SSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DG-T-AKDFGTP------AVY 177 (751)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~G-~-~~~lt~~------~~~ 177 (751)
..|.++++ .+ + ...+... ..+
T Consensus 144 --------------------------------------------------n~i~l~~l~ess~~vaev~ss~s~e~~~~f 173 (370)
T KOG1007|consen 144 --------------------------------------------------NNIVLWSLDESSKIVAEVLSSESAEMRHSF 173 (370)
T ss_pred --------------------------------------------------CceEEEEcccCcchheeeccccccccccee
Confidence 35555666 33 2 1222111 345
Q ss_pred EeeeeCC--CCceEEEEEecCCcccccccCCCceeEEEEeCCCceeeeeccCCCCCCCCCccCCccCCCceeeeecCCCc
Q 004475 178 TAVEPSP--DQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPS 255 (751)
Q Consensus 178 ~~~~~Sp--DG~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~spdG~~ 255 (751)
.+-+||| ||..++.+... .++.||+.+-.. ..... .+...-+|.+.|+|+-.+
T Consensus 174 tsg~WspHHdgnqv~tt~d~--------------tl~~~D~RT~~~--~~sI~---------dAHgq~vrdlDfNpnkq~ 228 (370)
T KOG1007|consen 174 TSGAWSPHHDGNQVATTSDS--------------TLQFWDLRTMKK--NNSIE---------DAHGQRVRDLDFNPNKQH 228 (370)
T ss_pred cccccCCCCccceEEEeCCC--------------cEEEEEccchhh--hcchh---------hhhcceeeeccCCCCceE
Confidence 6789999 99999887533 577888874321 11111 112223678899999998
Q ss_pred eEEEEEeccCCCCccccCcccceeeccCCCCCCCCceEeEeeceeEE-EEEecCCceEEEee
Q 004475 256 TLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFS-VSWCDDSLALVNET 316 (751)
Q Consensus 256 ~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~-~~~spdg~~l~~~~ 316 (751)
.|+-+. +.+.+.++|.- .+....+.+.....-+- +.|-|--..|+.+.
T Consensus 229 ~lvt~g------------DdgyvriWD~R-~tk~pv~el~~HsHWvW~VRfn~~hdqLiLs~ 277 (370)
T KOG1007|consen 229 ILVTCG------------DDGYVRIWDTR-KTKFPVQELPGHSHWVWAVRFNPEHDQLILSG 277 (370)
T ss_pred EEEEcC------------CCccEEEEecc-CCCccccccCCCceEEEEEEecCccceEEEec
Confidence 333322 33577788873 33333344443333333 66667666665544
No 377
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=97.12 E-value=0.059 Score=54.40 Aligned_cols=215 Identities=10% Similarity=0.114 Sum_probs=117.3
Q ss_pred EeeeeCCCCceEEEEEecCCcccccccCCCceeEEEEeCCCceee--eeccCCCCCCCCCccCCccCCCceeeeecCCCc
Q 004475 178 TAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVR--ELCDLPPAEDIPVCYNSVREGMRSISWRADKPS 255 (751)
Q Consensus 178 ~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~--~l~~~~~~~~~~~~~~~~~~~~~~~~~spdG~~ 255 (751)
.+++|++.-+--+.+... ...+.+||+...... .+.. -..+......+..++|+|--..
T Consensus 181 ~glsWn~~~~g~Lls~~~------------d~~i~lwdi~~~~~~~~~~~p-------~~~~~~h~~~VeDV~~h~~h~~ 241 (422)
T KOG0264|consen 181 YGLSWNRQQEGTLLSGSD------------DHTICLWDINAESKEDKVVDP-------KTIFSGHEDVVEDVAWHPLHED 241 (422)
T ss_pred cccccccccceeEeeccC------------CCcEEEEeccccccCCccccc-------eEEeecCCcceehhhccccchh
Confidence 357898877665555433 346888988744321 1100 0122333334557899988877
Q ss_pred eEEEEEeccCCCCccccCcccceeeccCCCCCCCCceEeEeeceeEE-EEEecCCceEEEeeeecccceeEEEecCCCCC
Q 004475 256 TLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFS-VSWCDDSLALVNETWYKTSQTRTWLVCPGSKD 334 (751)
Q Consensus 256 ~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~-~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~ 334 (751)
++..+. ..+.|.++|+-..+...........+.+. ++|.|=+..|+.+. +...+|.+.|+..-
T Consensus 242 lF~sv~------------dd~~L~iwD~R~~~~~~~~~~~ah~~~vn~~~fnp~~~~ilAT~---S~D~tV~LwDlRnL- 305 (422)
T KOG0264|consen 242 LFGSVG------------DDGKLMIWDTRSNTSKPSHSVKAHSAEVNCVAFNPFNEFILATG---SADKTVALWDLRNL- 305 (422)
T ss_pred hheeec------------CCCeEEEEEcCCCCCCCcccccccCCceeEEEeCCCCCceEEec---cCCCcEEEeechhc-
Confidence 333332 44688888874212222333445566777 99999988776554 22356777777653
Q ss_pred CcceeeeecccccccCCCCCCCeeeCCCCCEEEEeeeecCCcceEEEEccCCCCCCCCCceeEEEecCC-CceeE-Eeec
Q 004475 335 VAPRVLFDRVFENVYSDPGSPMMTRTSTGTNVIAKIKKENDEQIYILLNGRGFTPEGNIPFLDLFDINT-GSKER-IWES 412 (751)
Q Consensus 335 ~~~~~l~~~~~~~~~~~~~~~~~~~spDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~-g~~~~-l~~~ 412 (751)
..+...+......+.. +.|||+...|+..+ +...+|.+||+.. |+.+. ....
T Consensus 306 ~~~lh~~e~H~dev~~------V~WSPh~etvLASS--------------------g~D~rl~vWDls~ig~eq~~eda~ 359 (422)
T KOG0264|consen 306 NKPLHTFEGHEDEVFQ------VEWSPHNETVLASS--------------------GTDRRLNVWDLSRIGEEQSPEDAE 359 (422)
T ss_pred ccCceeccCCCcceEE------EEeCCCCCceeEec--------------------ccCCcEEEEeccccccccChhhhc
Confidence 1111222222333333 88999998887776 2334677888763 22211 1111
Q ss_pred cchhhhhceeeeec----CCcceeeccCCCEEEEEEecCCCCCeEEEEE
Q 004475 413 NREKYFETAVALVF----GQGEEDINLNQLKILTSKESKTEITQYHILS 457 (751)
Q Consensus 413 ~~~~~~~~~~~~~~----~~~~~~~s~dg~~l~~~~~~~~~~~~l~~~~ 457 (751)
++. ..+....+ -...++|.|+-.+++++.+..+ ..+||.+.
T Consensus 360 dgp---pEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN-~LqIW~~s 404 (422)
T KOG0264|consen 360 DGP---PELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDN-ILQIWQMA 404 (422)
T ss_pred cCC---cceeEEecCcccccccccCCCCCCeEEEEecCCc-eEEEeecc
Confidence 110 00001111 1234789999999998876664 45666554
No 378
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.12 E-value=0.044 Score=51.10 Aligned_cols=224 Identities=13% Similarity=0.118 Sum_probs=125.8
Q ss_pred ceeEEeecCCCCCCCCcccccCCCCcccccceeecCCCCeEEEEEeecccccccCCceeEEEEEcCCCCeeeccCCCCcc
Q 004475 5 TGIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDIC 84 (751)
Q Consensus 5 ~~~~~~~~~~~~~~g~~~~l~~~~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~~~~~l~i~~~~~g~~~~lt~~~~~~ 84 (751)
..|++.++.. + +..+......-.-.....+||+.-..++++. .+.+.|.++++ +-...+|....++.
T Consensus 38 G~L~ile~~~--~-~gi~e~~s~d~~D~LfdV~Wse~~e~~~~~a---------~GDGSLrl~d~-~~~s~Pi~~~kEH~ 104 (311)
T KOG0277|consen 38 GRLFILEVTD--P-KGIQECQSYDTEDGLFDVAWSENHENQVIAA---------SGDGSLRLFDL-TMPSKPIHKFKEHK 104 (311)
T ss_pred ceEEEEecCC--C-CCeEEEEeeecccceeEeeecCCCcceEEEE---------ecCceEEEecc-CCCCcchhHHHhhh
Confidence 4678888864 1 2222222211112478899999999998876 44566666663 33444554333332
Q ss_pred ccceeeeeEEecCCcEEEEeecCCCCCCCCCCCCCCCCceeeccccccccchhhhhccCCccchhhhhhheeeEEEEEcC
Q 004475 85 LNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL 164 (751)
Q Consensus 85 ~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 164 (751)
- .+.++.|++--++++.++. .++. -.||..+.
T Consensus 105 ~--EV~Svdwn~~~r~~~ltsS-WD~T---------------------------------------------iKLW~~~r 136 (311)
T KOG0277|consen 105 R--EVYSVDWNTVRRRIFLTSS-WDGT---------------------------------------------IKLWDPNR 136 (311)
T ss_pred h--heEEeccccccceeEEeec-cCCc---------------------------------------------eEeecCCC
Confidence 1 3668889987666666642 1111 23444443
Q ss_pred CCCceecCCC-ceEEeeeeCCCC-ceEEEEEecCCcccccccCCCceeEEEEeCCC-ceeeeeccCCCCCCCCCccCCcc
Q 004475 165 DGTAKDFGTP-AVYTAVEPSPDQ-KYVLITSMHRPYSYKVPCARFSQKVQVWTTDG-KLVRELCDLPPAEDIPVCYNSVR 241 (751)
Q Consensus 165 ~G~~~~lt~~-~~~~~~~~SpDG-~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~-~~~~~l~~~~~~~~~~~~~~~~~ 241 (751)
...++....+ .-+....|||-- ..++..+.+ ..+.+||++. ++...+. ...
T Consensus 137 ~~Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd-------------~~l~lwdvr~~gk~~~i~-------------ah~ 190 (311)
T KOG0277|consen 137 PNSVQTFNGHNSCIYQAAFSPHIPNLFASASGD-------------GTLRLWDVRSPGKFMSIE-------------AHN 190 (311)
T ss_pred CcceEeecCCccEEEEEecCCCCCCeEEEccCC-------------ceEEEEEecCCCceeEEE-------------ecc
Confidence 3345555545 567789999954 555544332 3566777752 2222221 122
Q ss_pred CCCceeeeecCCCceEEEEEeccCCCCccccCcccceeeccCCCCCCCCceEeEeeceeEE-EEEecCCceEEEeeeecc
Q 004475 242 EGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFS-VSWCDDSLALVNETWYKT 320 (751)
Q Consensus 242 ~~~~~~~~spdG~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~-~~~spdg~~l~~~~~~~~ 320 (751)
.++..+.|+.-... ++++.. ..+.|+.+|+.... ....+|..+...+. +.|||-...|+.++..+
T Consensus 191 ~Eil~cdw~ky~~~-vl~Tg~-----------vd~~vr~wDir~~r-~pl~eL~gh~~AVRkvk~Sph~~~lLaSasYD- 256 (311)
T KOG0277|consen 191 SEILCCDWSKYNHN-VLATGG-----------VDNLVRGWDIRNLR-TPLFELNGHGLAVRKVKFSPHHASLLASASYD- 256 (311)
T ss_pred ceeEeecccccCCc-EEEecC-----------CCceEEEEehhhcc-ccceeecCCceEEEEEecCcchhhHhhhcccc-
Confidence 33557889988887 666542 22467777774111 12334444556677 99999988877666442
Q ss_pred cceeEEEec
Q 004475 321 SQTRTWLVC 329 (751)
Q Consensus 321 ~~~~l~~~~ 329 (751)
...+||...
T Consensus 257 mT~riw~~~ 265 (311)
T KOG0277|consen 257 MTVRIWDPE 265 (311)
T ss_pred ceEEecccc
Confidence 234566443
No 379
>PF01674 Lipase_2: Lipase (class 2); InterPro: IPR002918 Lipases or triacylglycerol acylhydrolases hydrolyse ester bonds in triacylglycerol giving diacylglycerol, monoacylglycerol, glycerol and free fatty acids []. This group of lipases has been called class 2 as they are not clearly related to other lipase families, and includes LipA and LipB from Bacillus subtilis [] and uncharacterised proteins from Caenorhabditis.; PDB: 2VTV_B 2X76_A 2X5X_A 2QXU_A 3QMM_A 1I6W_A 3D2C_J 2QXT_B 1R50_A 1T2N_A ....
Probab=97.07 E-value=0.002 Score=60.91 Aligned_cols=70 Identities=19% Similarity=0.224 Sum_probs=40.2
Q ss_pred hHHHHHHhCCeE---EEEcCCCCCCCCCCCCCCchh---HHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHH
Q 004475 545 TSSLIFLARRFA---VLAGPSIPIIGEGDKLPNDRF---VEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHL 618 (751)
Q Consensus 545 ~~~~~~~~~G~~---v~~~~~~~~~g~g~~~~~~~~---~~~~~~d~~~~v~~l~~~~~id~~~i~l~G~S~GG~~a~~~ 618 (751)
.+...|.++||. |++..+ |.+........ ..+.+.++.+.|+.+++.-. . ||-|+||||||.++-++
T Consensus 20 ~~~~~l~~~GY~~~~vya~ty----g~~~~~~~~~~~~~~~~~~~~l~~fI~~Vl~~TG--a-kVDIVgHS~G~~iaR~y 92 (219)
T PF01674_consen 20 TLAPYLKAAGYCDSEVYALTY----GSGNGSPSVQNAHMSCESAKQLRAFIDAVLAYTG--A-KVDIVGHSMGGTIARYY 92 (219)
T ss_dssp HHHHHHHHTT--CCCEEEE------S-CCHHTHHHHHHB-HHHHHHHHHHHHHHHHHHT-----EEEEEETCHHHHHHHH
T ss_pred HHHHHHHHcCCCcceeEeccC----CCCCCCCcccccccchhhHHHHHHHHHHHHHhhC--C-EEEEEEcCCcCHHHHHH
Confidence 567789999999 677444 22111010000 11234667777777776532 4 89999999999999888
Q ss_pred HHh
Q 004475 619 LAH 621 (751)
Q Consensus 619 a~~ 621 (751)
+..
T Consensus 93 i~~ 95 (219)
T PF01674_consen 93 IKG 95 (219)
T ss_dssp HHH
T ss_pred HHH
Confidence 754
No 380
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=97.07 E-value=0.11 Score=50.25 Aligned_cols=206 Identities=11% Similarity=0.072 Sum_probs=94.4
Q ss_pred ceEEeeeeCCCCceEEEEEecCCcccccccCCCceeEEEEeCCCceeeeeccCCCCCCCCCccCCccCCCceeeeecCCC
Q 004475 175 AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKP 254 (751)
Q Consensus 175 ~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~spdG~ 254 (751)
..+.+++|.||.+.|+...+. ...|+.++.+|+-.+++.- .+.. ..-++++.-+|.
T Consensus 22 ~e~SGLTy~pd~~tLfaV~d~------------~~~i~els~~G~vlr~i~l-~g~~-----------D~EgI~y~g~~~ 77 (248)
T PF06977_consen 22 DELSGLTYNPDTGTLFAVQDE------------PGEIYELSLDGKVLRRIPL-DGFG-----------DYEGITYLGNGR 77 (248)
T ss_dssp S-EEEEEEETTTTEEEEEETT------------TTEEEEEETT--EEEEEE--SS-S-----------SEEEEEE-STTE
T ss_pred CCccccEEcCCCCeEEEEECC------------CCEEEEEcCCCCEEEEEeC-CCCC-----------CceeEEEECCCE
Confidence 468899999999988877655 3468888988776665421 1110 111567776665
Q ss_pred ceEEEEEeccCCCCccccCcccceeeccCCCCCCCC-c---eEeE-----eeceeEE-EEEecCCceEEEeeeeccccee
Q 004475 255 STLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEK-P---EILH-----KLDLRFS-VSWCDDSLALVNETWYKTSQTR 324 (751)
Q Consensus 255 ~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-~---~~l~-----~~~~~~~-~~~spdg~~l~~~~~~~~~~~~ 324 (751)
+ +..+ + .+..|+++.++..+... . +.+. ..+..+. ++|.|.++.|+...++.+ ..
T Consensus 78 ~--vl~~-E----------r~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P--~~ 142 (248)
T PF06977_consen 78 Y--VLSE-E----------RDQRLYIFTIDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKP--KR 142 (248)
T ss_dssp E--EEEE-T----------TTTEEEEEEE----TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSS--EE
T ss_pred E--EEEE-c----------CCCcEEEEEEeccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCC--hh
Confidence 3 3332 1 23567777774222111 1 1111 1233456 999999998887764433 46
Q ss_pred EEEecCCCCCCcceeeeecccc--cccCCCCCCCeeeCCCCCEEEEeeeecCCcceEEEEccCCCCCCCCCceeEEEecC
Q 004475 325 TWLVCPGSKDVAPRVLFDRVFE--NVYSDPGSPMMTRTSTGTNVIAKIKKENDEQIYILLNGRGFTPEGNIPFLDLFDIN 402 (751)
Q Consensus 325 l~~~~~~~~~~~~~~l~~~~~~--~~~~~~~~~~~~~spDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~ 402 (751)
||.++................. .... .....+++.|.-..|+..+. ....|..+|.
T Consensus 143 l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~d~S~l~~~p~t~~lliLS~--------------------es~~l~~~d~- 200 (248)
T PF06977_consen 143 LYEVNGFPGGFDLFVSDDQDLDDDKLFV-RDLSGLSYDPRTGHLLILSD--------------------ESRLLLELDR- 200 (248)
T ss_dssp EEEEESTT-SS--EEEE-HHHH-HT--S-S---EEEEETTTTEEEEEET--------------------TTTEEEEE-T-
T ss_pred hEEEccccCccceeecccccccccccee-ccccceEEcCCCCeEEEEEC--------------------CCCeEEEECC-
Confidence 8888762210111111111111 0000 00111556666666666662 3447788886
Q ss_pred CCceeEEeeccchhhhhceeeeecCCcceeeccCCCEEEEE
Q 004475 403 TGSKERIWESNREKYFETAVALVFGQGEEDINLNQLKILTS 443 (751)
Q Consensus 403 ~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~ 443 (751)
.|+.......... ..........+..+++++||+-.+.+
T Consensus 201 ~G~~~~~~~L~~g--~~gl~~~~~QpEGIa~d~~G~LYIvs 239 (248)
T PF06977_consen 201 QGRVVSSLSLDRG--FHGLSKDIPQPEGIAFDPDGNLYIVS 239 (248)
T ss_dssp T--EEEEEE-STT--GGG-SS---SEEEEEE-TT--EEEEE
T ss_pred CCCEEEEEEeCCc--ccCcccccCCccEEEECCCCCEEEEc
Confidence 4555444443321 01111223345558999998644443
No 381
>PF05577 Peptidase_S28: Serine carboxypeptidase S28; InterPro: IPR008758 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to MEROPS peptidase family S28 (clan SC). The predicted active site residues for members of this family and family S10 occur in the same order in the sequence: S, D, H. These serine proteases include several eukaryotic enzymes such as lysosomal Pro-X carboxypeptidase, dipeptidyl-peptidase II, and thymus-specific serine peptidase [, , , ].; GO: 0008236 serine-type peptidase activity, 0006508 proteolysis; PDB: 3N2Z_B 3JYH_A 3N0T_C.
Probab=97.06 E-value=0.0037 Score=67.31 Aligned_cols=88 Identities=24% Similarity=0.141 Sum_probs=58.3
Q ss_pred HHHHHh-CCeEEEEcCCCCCCCCCCCCCC-------c--hhHHHHHHHHHHHHHHHHHcC-CCCCCcEEEEEeChHHHHH
Q 004475 547 SLIFLA-RRFAVLAGPSIPIIGEGDKLPN-------D--RFVEQLVSSAEAAVEEVVRRG-VADPSRIAVGGHSYGAFMT 615 (751)
Q Consensus 547 ~~~~~~-~G~~v~~~~~~~~~g~g~~~~~-------~--~~~~~~~~d~~~~v~~l~~~~-~id~~~i~l~G~S~GG~~a 615 (751)
...+|+ .|-.++. ...+=+|.+.+. . ...++.++|+...+++++.+. ..+..+++++|.|+||.+|
T Consensus 51 ~~~lA~~~~a~~v~---lEHRyYG~S~P~~~~s~~nL~yLt~~QALaD~a~F~~~~~~~~~~~~~~pwI~~GgSY~G~La 127 (434)
T PF05577_consen 51 MWELAKEFGALVVA---LEHRYYGKSQPFGDLSTENLRYLTSEQALADLAYFIRYVKKKYNTAPNSPWIVFGGSYGGALA 127 (434)
T ss_dssp HHHHHHHHTEEEEE---E--TTSTTB-TTGGGGGSTTTC-SHHHHHHHHHHHHHHHHHHTTTGCC--EEEEEETHHHHHH
T ss_pred HHHHHHHcCCcEEE---eehhhhcCCCCccccchhhHHhcCHHHHHHHHHHHHHHHHHhhcCCCCCCEEEECCcchhHHH
Confidence 334554 4666666 334445555321 1 125678999999999998653 3355699999999999999
Q ss_pred HHHHHhCCCceeEEEEccCCCC
Q 004475 616 AHLLAHAPHLFCCGIARSGSYN 637 (751)
Q Consensus 616 ~~~a~~~p~~~~~~v~~~~~~d 637 (751)
+++-.++|+.+.++++.++++.
T Consensus 128 aw~r~kyP~~~~ga~ASSapv~ 149 (434)
T PF05577_consen 128 AWFRLKYPHLFDGAWASSAPVQ 149 (434)
T ss_dssp HHHHHH-TTT-SEEEEET--CC
T ss_pred HHHHhhCCCeeEEEEeccceee
Confidence 9999999999999999988755
No 382
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=97.05 E-value=0.0032 Score=67.96 Aligned_cols=93 Identities=13% Similarity=0.187 Sum_probs=66.5
Q ss_pred CCceeEEEEEcCCCCeeeccCCCCccccceeeeeEEecCCcEEEEeecCCCCCCCCCCCCCCCCceeeccccccccchhh
Q 004475 59 SCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMT 138 (751)
Q Consensus 59 ~~~~~l~i~~~~~g~~~~lt~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (751)
-+...|.++|+.+.+..+...+.+. .+..+.|||||+||+..+.+
T Consensus 553 ~ddf~I~vvD~~t~kvvR~f~gh~n----ritd~~FS~DgrWlisasmD------------------------------- 597 (910)
T KOG1539|consen 553 LDDFSIRVVDVVTRKVVREFWGHGN----RITDMTFSPDGRWLISASMD------------------------------- 597 (910)
T ss_pred cCceeEEEEEchhhhhhHHhhcccc----ceeeeEeCCCCcEEEEeecC-------------------------------
Confidence 4558899999988776555444433 37789999999999988553
Q ss_pred hhccCCccchhhhhhheeeEEEEEcC-CCCc-eecCCCceEEeeeeCCCCceEEEEEecCCcccccccCCCceeEEEEeC
Q 004475 139 DNLLKDEYDESLFDYYTTAQLVLGSL-DGTA-KDFGTPAVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTT 216 (751)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~l~~~~~-~G~~-~~lt~~~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~ 216 (751)
+.|.++|+ +|.. --+.-.....++.+||.|.+|+.+..+ ...||+|.-
T Consensus 598 ------------------~tIr~wDlpt~~lID~~~vd~~~~sls~SPngD~LAT~Hvd------------~~gIylWsN 647 (910)
T KOG1539|consen 598 ------------------STIRTWDLPTGTLIDGLLVDSPCTSLSFSPNGDFLATVHVD------------QNGIYLWSN 647 (910)
T ss_pred ------------------CcEEEEeccCcceeeeEecCCcceeeEECCCCCEEEEEEec------------CceEEEEEc
Confidence 57888888 7733 222222456689999999999988655 345788853
No 383
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.01 E-value=0.45 Score=52.63 Aligned_cols=227 Identities=10% Similarity=0.083 Sum_probs=125.4
Q ss_pred cccceeecCCCCeEEEEEeecccccccCCceeEEEEEcCCCCeeeccCCCCccccceeeeeEEecCCcEEEEeecCCCCC
Q 004475 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRD 111 (751)
Q Consensus 32 ~~~~p~~SPDG~~iaf~~~~~~~~~~~~~~~~l~i~~~~~g~~~~lt~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~ 111 (751)
.+...+|+|---||..... ++.-+||-+..-+= ..+. .++ .+.++.+.|.|.+-..+.. ++
T Consensus 11 RvKglsFHP~rPwILtslH--------sG~IQlWDYRM~tl-i~rF---deH--dGpVRgv~FH~~qplFVSG-----GD 71 (1202)
T KOG0292|consen 11 RVKGLSFHPKRPWILTSLH--------SGVIQLWDYRMGTL-IDRF---DEH--DGPVRGVDFHPTQPLFVSG-----GD 71 (1202)
T ss_pred cccceecCCCCCEEEEeec--------CceeeeehhhhhhH-Hhhh---hcc--CCccceeeecCCCCeEEec-----CC
Confidence 4677899999999988654 56678887665321 1122 222 1247888999998643322 11
Q ss_pred CCCCCCCCCCCceeeccccccccchhhhhccCCccchhhhhhheeeEEEEEcCC--CCceecCCC-ceEEeeeeCCCCce
Q 004475 112 PPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSLD--GTAKDFGTP-AVYTAVEPSPDQKY 188 (751)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--G~~~~lt~~-~~~~~~~~SpDG~~ 188 (751)
. ..|.+++.. .-.-+|..+ ..++...|.+.==+
T Consensus 72 D--------------------------------------------ykIkVWnYk~rrclftL~GHlDYVRt~~FHheyPW 107 (1202)
T KOG0292|consen 72 D--------------------------------------------YKIKVWNYKTRRCLFTLLGHLDYVRTVFFHHEYPW 107 (1202)
T ss_pred c--------------------------------------------cEEEEEecccceehhhhccccceeEEeeccCCCce
Confidence 0 234444442 233344445 67788889988888
Q ss_pred EEEEEecCCcccccccCCCceeEEEEeCCCcee-eeeccCCCCCCCCCccCCccCCCceeeeecCCCceEEEEEeccCCC
Q 004475 189 VLITSMHRPYSYKVPCARFSQKVQVWTTDGKLV-RELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGD 267 (751)
Q Consensus 189 i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~spdG~~~i~~~~~~~~~~ 267 (751)
|+-.+++ +.|.+|+-.+... -.++. ...++-...|.|.... |+-++.
T Consensus 108 IlSASDD-------------QTIrIWNwqsr~~iavltG-------------HnHYVMcAqFhptEDl-IVSaSL----- 155 (1202)
T KOG0292|consen 108 ILSASDD-------------QTIRIWNWQSRKCIAVLTG-------------HNHYVMCAQFHPTEDL-IVSASL----- 155 (1202)
T ss_pred EEEccCC-------------CeEEEEeccCCceEEEEec-------------CceEEEeeccCCccce-EEEecc-----
Confidence 8776554 3577888765443 33332 3344556788887665 555542
Q ss_pred CccccCcccceeeccCCCC--------------------------CCCCceEe-EeeceeEE-EEEecCCceEEEeeeec
Q 004475 268 ANVEVSPRDIIYTQPAEPA--------------------------EGEKPEIL-HKLDLRFS-VSWCDDSLALVNETWYK 319 (751)
Q Consensus 268 ~~~~~~~~~~l~~~~~~~~--------------------------~~~~~~~l-~~~~~~~~-~~~spdg~~l~~~~~~~ 319 (751)
...+.+||+... ++...+.+ ..++..+. .+|.|.--.|+.++ +
T Consensus 156 -------DQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpliVSG~--D 226 (1202)
T KOG0292|consen 156 -------DQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPLIVSGA--D 226 (1202)
T ss_pred -------cceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcceEEecC--C
Confidence 123333333210 01111222 22344455 67777666555544 3
Q ss_pred ccceeEEEecCCCCCCcceeeeecccccccCCCCCCCeeeCCCCCEEEEee
Q 004475 320 TSQTRTWLVCPGSKDVAPRVLFDRVFENVYSDPGSPMMTRTSTGTNVIAKI 370 (751)
Q Consensus 320 ~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~spDG~~l~~~~ 370 (751)
.+.-.||+++... ...+..-.+..+.+.+ ..|.|.-..|+..+
T Consensus 227 DRqVKlWrmnetK--aWEvDtcrgH~nnVss------vlfhp~q~lIlSns 269 (1202)
T KOG0292|consen 227 DRQVKLWRMNETK--AWEVDTCRGHYNNVSS------VLFHPHQDLILSNS 269 (1202)
T ss_pred cceeeEEEecccc--ceeehhhhcccCCcce------EEecCccceeEecC
Confidence 4556788887644 2333334444444433 55777666665555
No 384
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=96.98 E-value=0.017 Score=56.50 Aligned_cols=155 Identities=12% Similarity=0.144 Sum_probs=88.4
Q ss_pred CceeeeecCCCceEEEEEeccCCCCccccCcccceeeccCCCCCCCCceEeEeeceeEE-EEEecCCceEEEeeeecccc
Q 004475 244 MRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFS-VSWCDDSLALVNETWYKTSQ 322 (751)
Q Consensus 244 ~~~~~~spdG~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~-~~~spdg~~l~~~~~~~~~~ 322 (751)
+..+.|+|-...+|+.+. ....|+++|+-. +...+.+.- ..... ++|+| ..+.|.+.. ..
T Consensus 190 i~svkfNpvETsILas~~------------sDrsIvLyD~R~--~~Pl~KVi~-~mRTN~IswnP--eafnF~~a~--ED 250 (433)
T KOG0268|consen 190 ISSVKFNPVETSILASCA------------SDRSIVLYDLRQ--ASPLKKVIL-TMRTNTICWNP--EAFNFVAAN--ED 250 (433)
T ss_pred eeEEecCCCcchheeeec------------cCCceEEEeccc--CCccceeee-eccccceecCc--cccceeecc--cc
Confidence 447888888887444432 234688888741 222222222 22333 89999 445555532 34
Q ss_pred eeEEEecCCCCCCcceeeeecccccccCCCCCCCeeeCCCCCEEEEeeeecCCcceEEEEccCCCCCCCCCceeEEEecC
Q 004475 323 TRTWLVCPGSKDVAPRVLFDRVFENVYSDPGSPMMTRTSTGTNVIAKIKKENDEQIYILLNGRGFTPEGNIPFLDLFDIN 402 (751)
Q Consensus 323 ~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~spDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~ 402 (751)
..||..|+..- ..+..+.......+.. +.|||-|+-++..+-+ ..|.++.+.
T Consensus 251 ~nlY~~DmR~l-~~p~~v~~dhvsAV~d------VdfsptG~EfvsgsyD---------------------ksIRIf~~~ 302 (433)
T KOG0268|consen 251 HNLYTYDMRNL-SRPLNVHKDHVSAVMD------VDFSPTGQEFVSGSYD---------------------KSIRIFPVN 302 (433)
T ss_pred ccceehhhhhh-cccchhhcccceeEEE------eccCCCcchhcccccc---------------------ceEEEeecC
Confidence 57999887654 3344444444444433 7799999998887733 367777877
Q ss_pred CCceeEEeeccchhhhhceeeeecCCcceeeccCCCEEEEEEecCCCCCeEEEEE
Q 004475 403 TGSKERIWESNREKYFETAVALVFGQGEEDINLNQLKILTSKESKTEITQYHILS 457 (751)
Q Consensus 403 ~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~l~~~~ 457 (751)
.+.-+.+..... ..+|.. +.||-|++.++ +. +....-.+|...
T Consensus 303 ~~~SRdiYhtkR---Mq~V~~-------Vk~S~Dskyi~-SG-Sdd~nvRlWka~ 345 (433)
T KOG0268|consen 303 HGHSRDIYHTKR---MQHVFC-------VKYSMDSKYII-SG-SDDGNVRLWKAK 345 (433)
T ss_pred CCcchhhhhHhh---hheeeE-------EEEeccccEEE-ec-CCCcceeeeecc
Confidence 665555543321 112222 47899997554 43 333344455554
No 385
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=96.98 E-value=0.59 Score=49.24 Aligned_cols=270 Identities=10% Similarity=0.021 Sum_probs=145.3
Q ss_pred eEEeecCCCCCCCCcccccCCCCcccccceeecCCCCeEEEEEeecccccccCCceeEEEEEcCCCCeeeccCCCCcccc
Q 004475 7 IGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLN 86 (751)
Q Consensus 7 ~~~~~~~~~~~~g~~~~l~~~~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~~~~~l~i~~~~~g~~~~lt~~~~~~~~ 86 (751)
+-+++..+ .+...... .+.........|+|..++.+.. ....+...+.......+......
T Consensus 13 ~~v~~~~~----~~~~~~~~--~~~~~~~v~~~~~g~~~~v~~~---------~~~~~~~~~~~~n~~~~~~~~g~---- 73 (381)
T COG3391 13 VSVINTGT----NKVTAAIS--LGRGPGGVAVNPDGTQVYVANS---------GSNDVSVIDATSNTVTQSLSVGG---- 73 (381)
T ss_pred eEEEeecc----cEEEEEee--cCCCCceeEEcCccCEEEEEee---------cCceeeecccccceeeeeccCCC----
Confidence 44555544 44444432 2224567889999988877642 11256666554222222211110
Q ss_pred ceeeeeEEecCCcEEEEeecCCCCCCCCCCCCCCCCceeeccccccccchhhhhccCCccchhhhhhheeeEEEEEcCCC
Q 004475 87 AVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSLDG 166 (751)
Q Consensus 87 ~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~G 166 (751)
..-...+-+++|+.++..... ...+.++|...
T Consensus 74 ~~p~~i~v~~~~~~vyv~~~~------------------------------------------------~~~v~vid~~~ 105 (381)
T COG3391 74 VYPAGVAVNPAGNKVYVTTGD------------------------------------------------SNTVSVIDTAT 105 (381)
T ss_pred ccccceeeCCCCCeEEEecCC------------------------------------------------CCeEEEEcCcc
Confidence 012355777888877765321 03566666422
Q ss_pred --CceecCCCceEEeeeeCCCCceEEEEEecCCcccccccCCCceeEEEEeCCCceeeeeccCCCCCCCCCccCCccCCC
Q 004475 167 --TAKDFGTPAVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGM 244 (751)
Q Consensus 167 --~~~~lt~~~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 244 (751)
....+.-......++++|||+.+++..... ....+.++|..+...... .+.. ...
T Consensus 106 ~~~~~~~~vG~~P~~~~~~~~~~~vYV~n~~~----------~~~~vsvid~~t~~~~~~--~~vG-----------~~P 162 (381)
T COG3391 106 NTVLGSIPVGLGPVGLAVDPDGKYVYVANAGN----------GNNTVSVIDAATNKVTAT--IPVG-----------NTP 162 (381)
T ss_pred cceeeEeeeccCCceEEECCCCCEEEEEeccc----------CCceEEEEeCCCCeEEEE--EecC-----------CCc
Confidence 222222223456899999999999986531 245677888876654332 1100 012
Q ss_pred ceeeeecCCCceEEEEEeccCCCCccccCcccceeeccCCCCCCCCceE------eEeeceeEEEEEecCCceEEEeeee
Q 004475 245 RSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEI------LHKLDLRFSVSWCDDSLALVNETWY 318 (751)
Q Consensus 245 ~~~~~spdG~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~------l~~~~~~~~~~~spdg~~l~~~~~~ 318 (751)
..++++|+|+. ++.+.. ..+.|.+++.+ +..... +..........++|||+.++.....
T Consensus 163 ~~~a~~p~g~~-vyv~~~-----------~~~~v~vi~~~---~~~v~~~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~ 227 (381)
T COG3391 163 TGVAVDPDGNK-VYVTNS-----------DDNTVSVIDTS---GNSVVRGSVGSLVGVGTGPAGIAVDPDGNRVYVANDG 227 (381)
T ss_pred ceEEECCCCCe-EEEEec-----------CCCeEEEEeCC---CcceeccccccccccCCCCceEEECCCCCEEEEEecc
Confidence 37899999998 666541 23577777764 222221 1122222227899999987655432
Q ss_pred cccceeEEEecCCCCCCcceeeeecccccccCCCCCCCeeeCCCCCEEEEeeeecCCcceEEEEccCCCCCCCCCceeEE
Q 004475 319 KTSQTRTWLVCPGSKDVAPRVLFDRVFENVYSDPGSPMMTRTSTGTNVIAKIKKENDEQIYILLNGRGFTPEGNIPFLDL 398 (751)
Q Consensus 319 ~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~spDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 398 (751)
.....+..++..++ .... ........ .......+|+|+.++..... ...+..
T Consensus 228 -~~~~~v~~id~~~~--~v~~-~~~~~~~~----~~~~v~~~p~g~~~yv~~~~--------------------~~~V~v 279 (381)
T COG3391 228 -SGSNNVLKIDTATG--NVTA-TDLPVGSG----APRGVAVDPAGKAAYVANSQ--------------------GGTVSV 279 (381)
T ss_pred -CCCceEEEEeCCCc--eEEE-eccccccC----CCCceeECCCCCEEEEEecC--------------------CCeEEE
Confidence 22357888888774 1111 11111110 01116789999988776521 236777
Q ss_pred EecCCCceeEE
Q 004475 399 FDINTGSKERI 409 (751)
Q Consensus 399 ~d~~~g~~~~l 409 (751)
+|..+......
T Consensus 280 id~~~~~v~~~ 290 (381)
T COG3391 280 IDGATDRVVKT 290 (381)
T ss_pred EeCCCCceeee
Confidence 77776655433
No 386
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=96.93 E-value=0.044 Score=52.14 Aligned_cols=152 Identities=11% Similarity=0.114 Sum_probs=95.9
Q ss_pred CCcceeEEeecCCCCCCCCcccccCCCCcccccceeecCCCCe--EEEEEeecccccccCCceeEEEEEcCCCCeeeccC
Q 004475 2 PFFTGIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKR--IAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFE 79 (751)
Q Consensus 2 ~~~~~~~~~~~~~~~~~g~~~~l~~~~~~~~~~~p~~SPDG~~--iaf~~~~~~~~~~~~~~~~l~i~~~~~g~~~~lt~ 79 (751)
||..-++|||.++ -++-..=..+ ..+..-+|||=... |.-+. ....+|.+-|+++|.-.....
T Consensus 121 SFDhtlKVWDtnT----lQ~a~~F~me--~~VYshamSp~a~sHcLiA~g---------tr~~~VrLCDi~SGs~sH~Ls 185 (397)
T KOG4283|consen 121 SFDHTLKVWDTNT----LQEAVDFKME--GKVYSHAMSPMAMSHCLIAAG---------TRDVQVRLCDIASGSFSHTLS 185 (397)
T ss_pred cccceEEEeeccc----ceeeEEeecC--ceeehhhcChhhhcceEEEEe---------cCCCcEEEEeccCCcceeeec
Confidence 6778899999998 5555433233 35777889987652 22222 445899999999998666555
Q ss_pred CCCccccceeeeeEEecCCcEEEEeecCCCCCCCCCCCCCCCCceeeccccccccchhhhhccCCccchhhhhhhe-eeE
Q 004475 80 SPDICLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYT-TAQ 158 (751)
Q Consensus 80 ~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 158 (751)
+... ++..+.|||..++|+++....... ++|+..+ .+-
T Consensus 186 GHr~----~vlaV~Wsp~~e~vLatgsaDg~i-------------------------------------rlWDiRrasgc 224 (397)
T KOG4283|consen 186 GHRD----GVLAVEWSPSSEWVLATGSADGAI-------------------------------------RLWDIRRASGC 224 (397)
T ss_pred cccC----ceEEEEeccCceeEEEecCCCceE-------------------------------------EEEEeecccce
Confidence 5433 478999999999999883321111 1222221 144
Q ss_pred EEEEcC-CCCceec--CC--C-ceEEeeeeCCCCceEEEEEecCCcccccccCCCceeEEEEeCCCceee
Q 004475 159 LVLGSL-DGTAKDF--GT--P-AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVR 222 (751)
Q Consensus 159 l~~~~~-~G~~~~l--t~--~-~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~ 222 (751)
+.++|. .++.-++ ++ + +-+.+.+|+.||++++....+ ..+.+|+...++..
T Consensus 225 f~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gtd-------------~r~r~wn~~~G~nt 281 (397)
T KOG4283|consen 225 FRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGTD-------------DRIRVWNMESGRNT 281 (397)
T ss_pred eEEeecccCccCccccccccccceeeeeeecccchhhhhccCc-------------cceEEeecccCccc
Confidence 556666 4421111 22 2 667799999999999875433 35678888766543
No 387
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=96.85 E-value=0.033 Score=60.04 Aligned_cols=166 Identities=11% Similarity=0.133 Sum_probs=99.2
Q ss_pred eEEEEEcCC--CCce---ecCCC-ceEEeeeeCCCCceEEEEEecCCcccccccCCCceeEEEEeCCCceeeeeccCCCC
Q 004475 157 AQLVLGSLD--GTAK---DFGTP-AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPA 230 (751)
Q Consensus 157 ~~l~~~~~~--G~~~---~lt~~-~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~ 230 (751)
+.|.++|++ +.-+ -+.++ ..+..+.|++-.-.|+++... ...+-.||+..++....
T Consensus 110 G~i~vWdlnk~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQ------------Dg~vK~~DlR~~~S~~t------ 171 (839)
T KOG0269|consen 110 GVISVWDLNKSIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQ------------DGTVKCWDLRSKKSKST------ 171 (839)
T ss_pred CcEEEEecCccccchhhhHhhhhccceeeeeeccCCccEEEecCC------------CceEEEEeeeccccccc------
Confidence 466677773 3222 33445 778899999998888887543 34577899876554422
Q ss_pred CCCCCccCCccCCCceeeeecCCCceEEEEEeccCCCCccccCcccceeeccCCCCCCCCceEeEeeceeEE-EEEecCC
Q 004475 231 EDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFS-VSWCDDS 309 (751)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~spdG~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~-~~~spdg 309 (751)
+-..-+.+|.+.|+|--.. .++ +. ...+.|-++|+- ....-...++.+.+.+. ..|+|++
T Consensus 172 ------~~~nSESiRDV~fsp~~~~-~F~-s~----------~dsG~lqlWDlR-qp~r~~~k~~AH~GpV~c~nwhPnr 232 (839)
T KOG0269|consen 172 ------FRSNSESIRDVKFSPGYGN-KFA-SI----------HDSGYLQLWDLR-QPDRCEKKLTAHNGPVLCLNWHPNR 232 (839)
T ss_pred ------ccccchhhhceeeccCCCc-eEE-Ee----------cCCceEEEeecc-CchhHHHHhhcccCceEEEeecCCC
Confidence 1223456889999987654 233 22 234677777773 33344556777888888 9999999
Q ss_pred ceEEEeeeecccceeEEEecCCCCCCcceeeeecccccccCCCCCCCeeeCCCCCEEEEee
Q 004475 310 LALVNETWYKTSQTRTWLVCPGSKDVAPRVLFDRVFENVYSDPGSPMMTRTSTGTNVIAKI 370 (751)
Q Consensus 310 ~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~spDG~~l~~~~ 370 (751)
.+|+... ++....||- ..++...+ .++-.....+.- +.|-|+-.+.+..+
T Consensus 233 ~~lATGG--RDK~vkiWd--~t~~~~~~-~~tInTiapv~r------VkWRP~~~~hLAtc 282 (839)
T KOG0269|consen 233 EWLATGG--RDKMVKIWD--MTDSRAKP-KHTINTIAPVGR------VKWRPARSYHLATC 282 (839)
T ss_pred ceeeecC--CCccEEEEe--ccCCCccc-eeEEeecceeee------eeeccCccchhhhh
Confidence 9998765 233345554 44431221 222222222211 77999987655544
No 388
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=96.83 E-value=0.23 Score=49.44 Aligned_cols=121 Identities=17% Similarity=0.162 Sum_probs=77.9
Q ss_pred cCCCceeeeecCCCceEEEEEeccCCCCccccCcccceeeccCCCCCC------CCceEeEeeceeEE-EEEecCCceEE
Q 004475 241 REGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEG------EKPEILHKLDLRFS-VSWCDDSLALV 313 (751)
Q Consensus 241 ~~~~~~~~~spdG~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~------~~~~~l~~~~~~~~-~~~spdg~~l~ 313 (751)
...+-.+.|.|-....|+-.+ ....+.++.+ +..+ .-...|..+...+. +.|.|--.-++
T Consensus 81 t~~vLDi~w~PfnD~vIASgS------------eD~~v~vW~I-Pe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVL 147 (472)
T KOG0303|consen 81 TAPVLDIDWCPFNDCVIASGS------------EDTKVMVWQI-PENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVL 147 (472)
T ss_pred cccccccccCccCCceeecCC------------CCceEEEEEC-CCcccccCcccceEEEeecceeEEEEeecccchhhH
Confidence 344568899998887333322 2235555555 2221 12345566677788 99999887776
Q ss_pred EeeeecccceeEEEecCCCCCCcceeeeecccccccCCCCCCCeeeCCCCCEEEEeeeecCCcceEEEEccCCCCCCCCC
Q 004475 314 NETWYKTSQTRTWLVCPGSKDVAPRVLFDRVFENVYSDPGSPMMTRTSTGTNVIAKIKKENDEQIYILLNGRGFTPEGNI 393 (751)
Q Consensus 314 ~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~spDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 393 (751)
+++ +..+.+.+.+..++ .....|. ....+++ ++|+.||..|+..+.++
T Consensus 148 lsa---g~Dn~v~iWnv~tg-eali~l~--hpd~i~S------~sfn~dGs~l~TtckDK-------------------- 195 (472)
T KOG0303|consen 148 LSA---GSDNTVSIWNVGTG-EALITLD--HPDMVYS------MSFNRDGSLLCTTCKDK-------------------- 195 (472)
T ss_pred hhc---cCCceEEEEeccCC-ceeeecC--CCCeEEE------EEeccCCceeeeecccc--------------------
Confidence 666 33467788888886 2222222 3444555 88999999999988553
Q ss_pred ceeEEEecCCCcee
Q 004475 394 PFLDLFDINTGSKE 407 (751)
Q Consensus 394 ~~l~~~d~~~g~~~ 407 (751)
+|++||..+|++.
T Consensus 196 -kvRv~dpr~~~~v 208 (472)
T KOG0303|consen 196 -KVRVIDPRRGTVV 208 (472)
T ss_pred -eeEEEcCCCCcEe
Confidence 8999999888653
No 389
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=96.81 E-value=0.0026 Score=41.60 Aligned_cols=35 Identities=9% Similarity=0.034 Sum_probs=23.8
Q ss_pred EeEeeceeEE-EEEecCCceEEEeeeec-ccceeEEE
Q 004475 293 ILHKLDLRFS-VSWCDDSLALVNETWYK-TSQTRTWL 327 (751)
Q Consensus 293 ~l~~~~~~~~-~~~spdg~~l~~~~~~~-~~~~~l~~ 327 (751)
+++...+... +.|||||++|+|++++. .+..+||+
T Consensus 3 ~~t~~~~~~~~p~~SpDGk~i~f~s~~~~~g~~diy~ 39 (39)
T PF07676_consen 3 QLTNSPGDDGSPAWSPDGKYIYFTSNRNDRGSFDIYV 39 (39)
T ss_dssp EES-SSSSEEEEEE-TTSSEEEEEEECT--SSEEEEE
T ss_pred CcccCCccccCEEEecCCCEEEEEecCCCCCCcCEEC
Confidence 4555555666 99999999999999765 24456764
No 390
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=96.80 E-value=0.2 Score=47.77 Aligned_cols=222 Identities=14% Similarity=0.149 Sum_probs=117.5
Q ss_pred CCCCcccccCCCCcccccceeecCCCC-----eEEEEEeecccccccCCceeEEEEEcCCCCeeec---cCCCCccccce
Q 004475 17 SLGPEKEVHGYPDGAKINFVSWSPDGK-----RIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPL---FESPDICLNAV 88 (751)
Q Consensus 17 ~~g~~~~l~~~~~~~~~~~p~~SPDG~-----~iaf~~~~~~~~~~~~~~~~l~i~~~~~g~~~~l---t~~~~~~~~~~ 88 (751)
.+|+.....+.......+...|.||-+ .||.. ...-.||.+..+.++.+.- .........+-
T Consensus 83 ~s~e~~~~a~fd~~YP~tK~~wiPd~~g~~pdlLATs----------~D~LRlWri~~ee~~~~~~~~L~~~kns~~~aP 152 (364)
T KOG0290|consen 83 DSGELVEDANFDHPYPVTKLMWIPDSKGVYPDLLATS----------SDFLRLWRIGDEESRVELQSVLNNNKNSEFCAP 152 (364)
T ss_pred CCCceeccCCCCCCCCccceEecCCccccCcchhhcc----------cCeEEEEeccCcCCceehhhhhccCcccccCCc
Confidence 336666555433334567788999974 34443 4456778777654443221 12222222223
Q ss_pred eeeeEEec-CCcEEEEeecCCCCCCCCCCCCCCCCceeeccccccccchhhhhccCCccchhhhhhheeeEEEEEcC--C
Q 004475 89 FGSFVWVN-NSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL--D 165 (751)
Q Consensus 89 ~~~~~wsp-Dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~--~ 165 (751)
+.++.|.- |=++|-..+-+ .+..||-+.. .
T Consensus 153 lTSFDWne~dp~~igtSSiD-----------------------------------------------TTCTiWdie~~~~ 185 (364)
T KOG0290|consen 153 LTSFDWNEVDPNLIGTSSID-----------------------------------------------TTCTIWDIETGVS 185 (364)
T ss_pred ccccccccCCcceeEeeccc-----------------------------------------------CeEEEEEEeeccc
Confidence 45677763 44455444221 2245555544 3
Q ss_pred C--CceecCCCceEEeeeeCCCCceEEEEEecCCcccccccCCCceeEEEEeCCCceeeee-ccCCCCCCCCCccCCccC
Q 004475 166 G--TAKDFGTPAVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVREL-CDLPPAEDIPVCYNSVRE 242 (751)
Q Consensus 166 G--~~~~lt~~~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l-~~~~~~~~~~~~~~~~~~ 242 (751)
| +.+.+.....+.+++|+.+|+.++.+... ...+.++|+...+...+ +..+-.. .
T Consensus 186 ~~vkTQLIAHDKEV~DIaf~~~s~~~FASvga------------DGSvRmFDLR~leHSTIIYE~p~~~----------~ 243 (364)
T KOG0290|consen 186 GTVKTQLIAHDKEVYDIAFLKGSRDVFASVGA------------DGSVRMFDLRSLEHSTIIYEDPSPS----------T 243 (364)
T ss_pred cceeeEEEecCcceeEEEeccCccceEEEecC------------CCcEEEEEecccccceEEecCCCCC----------C
Confidence 4 33444444889999999988887665332 34567788765544332 2222111 1
Q ss_pred CCceeeeecCCCceEEEEEeccCCCCccccCcccceeeccCCCCCCCCceEeEeeceeEE-EEEecCCceEEEeeeeccc
Q 004475 243 GMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFS-VSWCDDSLALVNETWYKTS 321 (751)
Q Consensus 243 ~~~~~~~spdG~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~-~~~spdg~~l~~~~~~~~~ 321 (751)
-.-.++|++.....++-.. .+..++.++|+- .......+|..+.+.+. ++|.|-++.-+.++..
T Consensus 244 pLlRLswnkqDpnymATf~-----------~dS~~V~iLDiR-~P~tpva~L~~H~a~VNgIaWaPhS~~hictaGD--- 308 (364)
T KOG0290|consen 244 PLLRLSWNKQDPNYMATFA-----------MDSNKVVILDIR-VPCTPVARLRNHQASVNGIAWAPHSSSHICTAGD--- 308 (364)
T ss_pred cceeeccCcCCchHHhhhh-----------cCCceEEEEEec-CCCcceehhhcCcccccceEecCCCCceeeecCC---
Confidence 1235677766654222211 022466666662 22334455566677777 9999998876665522
Q ss_pred ceeEEEecCCC
Q 004475 322 QTRTWLVCPGS 332 (751)
Q Consensus 322 ~~~l~~~~~~~ 332 (751)
..+..+.|++.
T Consensus 309 D~qaliWDl~q 319 (364)
T KOG0290|consen 309 DCQALIWDLQQ 319 (364)
T ss_pred cceEEEEeccc
Confidence 23444445543
No 391
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=96.80 E-value=0.0029 Score=64.79 Aligned_cols=59 Identities=24% Similarity=0.285 Sum_probs=40.5
Q ss_pred cccceeecCCCCeEEEEEeecccccccCCceeEEEEEcCCCCeeeccCCCCccccceeeeeEEecCCcEEEEe
Q 004475 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFT 104 (751)
Q Consensus 32 ~~~~p~~SPDG~~iaf~~~~~~~~~~~~~~~~l~i~~~~~g~~~~lt~~~~~~~~~~~~~~~wspDg~~l~~~ 104 (751)
.+..-+|||||++||.|+. + +-|.|.+-++.+..-+-+. ..+++--++||||||+|+..
T Consensus 292 ~in~f~FS~DG~~LA~VSq--------D--GfLRvF~fdt~eLlg~mkS----YFGGLLCvcWSPDGKyIvtG 350 (636)
T KOG2394|consen 292 SINEFAFSPDGKYLATVSQ--------D--GFLRIFDFDTQELLGVMKS----YFGGLLCVCWSPDGKYIVTG 350 (636)
T ss_pred cccceeEcCCCceEEEEec--------C--ceEEEeeccHHHHHHHHHh----hccceEEEEEcCCccEEEec
Confidence 4678899999999999974 3 4555555545443333211 12246688999999999977
No 392
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=96.75 E-value=0.5 Score=45.38 Aligned_cols=39 Identities=13% Similarity=0.157 Sum_probs=29.0
Q ss_pred ceEEeeeeCCCCceEEEEEecCCcccccccCCCceeEEEEeCCCceeeeecc
Q 004475 175 AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCD 226 (751)
Q Consensus 175 ~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~ 226 (751)
..-+.++||||+..|+++.. ...|.++|+.|...-.+..
T Consensus 44 PQWRkl~WSpD~tlLa~a~S-------------~G~i~vfdl~g~~lf~I~p 82 (282)
T PF15492_consen 44 PQWRKLAWSPDCTLLAYAES-------------TGTIRVFDLMGSELFVIPP 82 (282)
T ss_pred chheEEEECCCCcEEEEEcC-------------CCeEEEEecccceeEEcCc
Confidence 44557899999999999754 3468889998876655533
No 393
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=96.68 E-value=0.25 Score=51.98 Aligned_cols=205 Identities=12% Similarity=0.017 Sum_probs=118.0
Q ss_pred ccceeecCCCCeEEEEEeecccccccCCceeEEEEEcCCCCeeeccCCCCccccceeeeeEEecCCcEEEEeecCCCCCC
Q 004475 33 INFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRDP 112 (751)
Q Consensus 33 ~~~p~~SPDG~~iaf~~~~~~~~~~~~~~~~l~i~~~~~g~~~~lt~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~ 112 (751)
-.....+++|.+++-.. .....+.+++.++.....-..... .-..++++||++.++......
T Consensus 76 p~~i~v~~~~~~vyv~~---------~~~~~v~vid~~~~~~~~~~~vG~-----~P~~~~~~~~~~~vYV~n~~~---- 137 (381)
T COG3391 76 PAGVAVNPAGNKVYVTT---------GDSNTVSVIDTATNTVLGSIPVGL-----GPVGLAVDPDGKYVYVANAGN---- 137 (381)
T ss_pred ccceeeCCCCCeEEEec---------CCCCeEEEEcCcccceeeEeeecc-----CCceEEECCCCCEEEEEeccc----
Confidence 34668888998775542 235788888855543222211111 135779999999999873311
Q ss_pred CCCCCCCCCCceeeccccccccchhhhhccCCccchhhhhhheeeEEEEEcC-CCCcee-cCCCceEEeeeeCCCCceEE
Q 004475 113 PKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DGTAKD-FGTPAVYTAVEPSPDQKYVL 190 (751)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~G~~~~-lt~~~~~~~~~~SpDG~~i~ 190 (751)
....+.++|. +++... +.-......++++|||+.++
T Consensus 138 ------------------------------------------~~~~vsvid~~t~~~~~~~~vG~~P~~~a~~p~g~~vy 175 (381)
T COG3391 138 ------------------------------------------GNNTVSVIDAATNKVTATIPVGNTPTGVAVDPDGNKVY 175 (381)
T ss_pred ------------------------------------------CCceEEEEeCCCCeEEEEEecCCCcceEEECCCCCeEE
Confidence 0146777777 443222 22112236899999999999
Q ss_pred EEEecCCcccccccCCCceeEEEEeCCCceeeeeccCCCCCCCCCccCCccCCCceeeeecCCCceEEEEEeccCCCCcc
Q 004475 191 ITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANV 270 (751)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~spdG~~~i~~~~~~~~~~~~~ 270 (751)
+.... .+.+.+++.++....+ ...... .....+...+.++|||++ ++.....
T Consensus 176 v~~~~------------~~~v~vi~~~~~~v~~-~~~~~~-------~~~~~~P~~i~v~~~g~~-~yV~~~~------- 227 (381)
T COG3391 176 VTNSD------------DNTVSVIDTSGNSVVR-GSVGSL-------VGVGTGPAGIAVDPDGNR-VYVANDG------- 227 (381)
T ss_pred EEecC------------CCeEEEEeCCCcceec-cccccc-------cccCCCCceEEECCCCCE-EEEEecc-------
Confidence 87532 3567888877665543 211101 111234557899999998 5554311
Q ss_pred ccCcccceeeccCCCCCCCCceEe--EeeceeEE-EEEecCCceEEEeeeecccceeEEEecCCCC
Q 004475 271 EVSPRDIIYTQPAEPAEGEKPEIL--HKLDLRFS-VSWCDDSLALVNETWYKTSQTRTWLVCPGSK 333 (751)
Q Consensus 271 ~~~~~~~l~~~~~~~~~~~~~~~l--~~~~~~~~-~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~ 333 (751)
.....+..++.. .+..... ........ ...+|+|+.++..... ...+..++..+.
T Consensus 228 --~~~~~v~~id~~---~~~v~~~~~~~~~~~~~~v~~~p~g~~~yv~~~~---~~~V~vid~~~~ 285 (381)
T COG3391 228 --SGSNNVLKIDTA---TGNVTATDLPVGSGAPRGVAVDPAGKAAYVANSQ---GGTVSVIDGATD 285 (381)
T ss_pred --CCCceEEEEeCC---CceEEEeccccccCCCCceeECCCCCEEEEEecC---CCeEEEEeCCCC
Confidence 113467777764 2222221 11111223 6789999987765432 356777777663
No 394
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=96.62 E-value=0.64 Score=46.22 Aligned_cols=235 Identities=16% Similarity=0.115 Sum_probs=127.6
Q ss_pred cccceeecCCCCeEEEEEeecccccccCCceeEEEEEcCCCCeeeccCCCCccccceeeeeEEe-cCCc-E-EEEeecCC
Q 004475 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWV-NNST-L-LIFTIPSS 108 (751)
Q Consensus 32 ~~~~p~~SPDG~~iaf~~~~~~~~~~~~~~~~l~i~~~~~g~~~~lt~~~~~~~~~~~~~~~ws-pDg~-~-l~~~~~~~ 108 (751)
+++....+ +++|... .+.+.+.+++.+|....+++.... .+..++|- +|.. . ++..+.+
T Consensus 107 WVSsv~~~--~~~Iltg----------sYDg~~riWd~~Gk~~~~~~Ght~-----~ik~v~~v~~n~~~~~fvsas~D- 168 (423)
T KOG0313|consen 107 WVSSVKGA--SKWILTG----------SYDGTSRIWDLKGKSIKTIVGHTG-----PIKSVAWVIKNSSSCLFVSASMD- 168 (423)
T ss_pred hhhhhccc--CceEEEe----------ecCCeeEEEecCCceEEEEecCCc-----ceeeeEEEecCCccceEEEecCC-
Confidence 55555555 5677664 456777788887776777754443 35667774 3332 2 2222211
Q ss_pred CCCCCCCCCCCCCCceeeccccccccchhhhhccCCccchhhhhhheeeEEEEEcCCC---CceecC-CC-ceEEeeeeC
Q 004475 109 RRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSLDG---TAKDFG-TP-AVYTAVEPS 183 (751)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~G---~~~~lt-~~-~~~~~~~~S 183 (751)
..-.||.++..- +....- .+ ..+..++..
T Consensus 169 ----------------------------------------------qtl~Lw~~~~~~~~~~~~~~~~GHk~~V~sVsv~ 202 (423)
T KOG0313|consen 169 ----------------------------------------------QTLRLWKWNVGENKVKALKVCRGHKRSVDSVSVD 202 (423)
T ss_pred ----------------------------------------------ceEEEEEecCchhhhhHHhHhcccccceeEEEec
Confidence 124688887732 222221 23 778899999
Q ss_pred CCCceEEEEEecCCcccccccCCCceeEEEEeCCCceeeee---cc---------CCCCCCCCC-ccCCccCCCceeeee
Q 004475 184 PDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVREL---CD---------LPPAEDIPV-CYNSVREGMRSISWR 250 (751)
Q Consensus 184 pDG~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l---~~---------~~~~~~~~~-~~~~~~~~~~~~~~s 250 (751)
+||.++.-.+-+ ..|-+|+........+ +. .......|. .+.....-+..+.|+
T Consensus 203 ~sgtr~~SgS~D-------------~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~ 269 (423)
T KOG0313|consen 203 SSGTRFCSGSWD-------------TMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVWS 269 (423)
T ss_pred CCCCeEEeeccc-------------ceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEecccccceeeEEEc
Confidence 999988765433 3455666222111111 11 111112232 233344456788999
Q ss_pred cCCCceEEEEEeccCCCCccccCcccceeeccCCCCCCCCceEeEeeceeEE-EEEecCCceEEEeeeecccceeEEEec
Q 004475 251 ADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFS-VSWCDDSLALVNETWYKTSQTRTWLVC 329 (751)
Q Consensus 251 pdG~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~-~~~spdg~~l~~~~~~~~~~~~l~~~~ 329 (751)
+.+ .+|.. ...-.|.++|++. ++....++ .+..+. +.++|..+.|+.++. ..+|-+.|
T Consensus 270 d~~---v~yS~-----------SwDHTIk~WDlet--g~~~~~~~-~~ksl~~i~~~~~~~Ll~~gss----dr~irl~D 328 (423)
T KOG0313|consen 270 DAT---VIYSV-----------SWDHTIKVWDLET--GGLKSTLT-TNKSLNCISYSPLSKLLASGSS----DRHIRLWD 328 (423)
T ss_pred CCC---ceEee-----------cccceEEEEEeec--ccceeeee-cCcceeEeecccccceeeecCC----CCceeecC
Confidence 833 34422 1334788888862 23333332 344455 889999998887652 24566677
Q ss_pred CCCCCCcceee-eecccccccCCCCCCCeeeCCCCCEEEEee
Q 004475 330 PGSKDVAPRVL-FDRVFENVYSDPGSPMMTRTSTGTNVIAKI 370 (751)
Q Consensus 330 ~~~~~~~~~~l-~~~~~~~~~~~~~~~~~~~spDG~~l~~~~ 370 (751)
+.++.+..... ..+..+.+-. +.|+|-..+++...
T Consensus 329 PR~~~gs~v~~s~~gH~nwVss------vkwsp~~~~~~~S~ 364 (423)
T KOG0313|consen 329 PRTGDGSVVSQSLIGHKNWVSS------VKWSPTNEFQLVSG 364 (423)
T ss_pred CCCCCCceeEEeeecchhhhhh------eecCCCCceEEEEE
Confidence 76653333322 2233333333 77999988766655
No 395
>PF08386 Abhydrolase_4: TAP-like protein; InterPro: IPR013595 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents a C-terminal domain associated with putative hydrolases and bacterial peptidases that belong to MEROPS peptidase family S33 (clan SC). They are related to a tripeptidyl aminopeptidase from Streptomyces lividans (Q54410 from SWISSPROT). A member of this family (Q6E3K7 from SWISSPROT) is thought to be involved in the C-terminal processing of propionicin F, a bacteriocidin characterised from Propionibacterium freudenreichii []. ; GO: 0008233 peptidase activity
Probab=96.55 E-value=0.0063 Score=50.16 Aligned_cols=60 Identities=28% Similarity=0.227 Sum_probs=50.1
Q ss_pred CCCEEEEEcCCCCCCCCChHHHHHHHHHHHhCCCcEEEEEeCCCCCcCCccccHHHHHHHHHHHHHH
Q 004475 672 KKPILIIHGEVDDKVGLFPMQAERFFDALKGHGALSRLVLLPFEHHVYAARENVMHVIWETDRWLQK 738 (751)
Q Consensus 672 ~~P~li~~G~~D~~vp~~~~~~~~~~~~l~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~fl~~ 738 (751)
..|+|++.++.|+..| ...++.+.+.|.. .+++.+++.+|+... .......+.+.+||..
T Consensus 34 ~~piL~l~~~~Dp~TP--~~~a~~~~~~l~~----s~lvt~~g~gHg~~~-~~s~C~~~~v~~yl~~ 93 (103)
T PF08386_consen 34 APPILVLGGTHDPVTP--YEGARAMAARLPG----SRLVTVDGAGHGVYA-GGSPCVDKAVDDYLLD 93 (103)
T ss_pred CCCEEEEecCcCCCCc--HHHHHHHHHHCCC----ceEEEEeccCcceec-CCChHHHHHHHHHHHc
Confidence 5899999999999999 9999999988864 379999999999864 4445777788888874
No 396
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=96.52 E-value=0.071 Score=56.96 Aligned_cols=99 Identities=12% Similarity=-0.072 Sum_probs=61.5
Q ss_pred CceeeeecCCCceEEEEEeccCCCCccccCcccceeeccCCCCCCCCceEeEee----ceeEE-EEEecCCceEEEeeee
Q 004475 244 MRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKL----DLRFS-VSWCDDSLALVNETWY 318 (751)
Q Consensus 244 ~~~~~~spdG~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~----~~~~~-~~~spdg~~l~~~~~~ 318 (751)
+..+...|..++ ++..- ....|.+++++ .++.+....+ ++..- +...|.|.+|+.+..
T Consensus 599 lYDm~Vdp~~k~-v~t~c------------QDrnirif~i~---sgKq~k~FKgs~~~eG~lIKv~lDPSgiY~atScs- 661 (1080)
T KOG1408|consen 599 LYDMAVDPTSKL-VVTVC------------QDRNIRIFDIE---SGKQVKSFKGSRDHEGDLIKVILDPSGIYLATSCS- 661 (1080)
T ss_pred EEEeeeCCCcce-EEEEe------------cccceEEEecc---ccceeeeecccccCCCceEEEEECCCccEEEEeec-
Confidence 346778888887 43321 12367777775 4444444432 34445 777899999887662
Q ss_pred cccceeEEEecCCCCCCcceeeeecccccccCCCCCCCeeeCCCCCEEEEee
Q 004475 319 KTSQTRTWLVCPGSKDVAPRVLFDRVFENVYSDPGSPMMTRTSTGTNVIAKI 370 (751)
Q Consensus 319 ~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~spDG~~l~~~~ 370 (751)
...|-++|.-++ +-.....+....+.+ +.|++|-|+|+..+
T Consensus 662 ---dktl~~~Df~sg--EcvA~m~GHsE~VTG------~kF~nDCkHlISvs 702 (1080)
T KOG1408|consen 662 ---DKTLCFVDFVSG--ECVAQMTGHSEAVTG------VKFLNDCKHLISVS 702 (1080)
T ss_pred ---CCceEEEEeccc--hhhhhhcCcchheee------eeecccchhheeec
Confidence 246778888775 333222333333443 77999999998887
No 397
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.51 E-value=0.46 Score=44.32 Aligned_cols=66 Identities=9% Similarity=0.107 Sum_probs=35.8
Q ss_pred eeceeEE-EEEecCCc----eEEEeeeecccceeEEEecCCCCCCcceeeeecccccccCCCCCCCeeeCCCCCEEEEee
Q 004475 296 KLDLRFS-VSWCDDSL----ALVNETWYKTSQTRTWLVCPGSKDVAPRVLFDRVFENVYSDPGSPMMTRTSTGTNVIAKI 370 (751)
Q Consensus 296 ~~~~~~~-~~~spdg~----~l~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~spDG~~l~~~~ 370 (751)
.+..-++ ++|.|.-. +|+-.+ .++.--||..+.+.+.-+.+.|.+ -...+|. .+||.-|..|+...
T Consensus 205 ~H~dwVRDVAwaP~~gl~~s~iAS~S--qDg~viIwt~~~e~e~wk~tll~~-f~~~~w~------vSWS~sGn~LaVs~ 275 (299)
T KOG1332|consen 205 GHKDWVRDVAWAPSVGLPKSTIASCS--QDGTVIIWTKDEEYEPWKKTLLEE-FPDVVWR------VSWSLSGNILAVSG 275 (299)
T ss_pred hcchhhhhhhhccccCCCceeeEEec--CCCcEEEEEecCccCccccccccc-CCcceEE------EEEeccccEEEEec
Confidence 3333345 78888742 233222 234445677775544223333433 1222444 78999999888876
No 398
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.50 E-value=1.8 Score=48.15 Aligned_cols=276 Identities=12% Similarity=0.195 Sum_probs=143.1
Q ss_pred cccccceeecCCCCeEEEEEeecccccccCCceeEEEEEcCCCCeeeccCCCCccccceeeeeEEecCCcEEEEeecCCC
Q 004475 30 GAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSR 109 (751)
Q Consensus 30 ~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~~~~~l~i~~~~~g~~~~lt~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~ 109 (751)
...++...|+|++.. ||+. ++ ++.-.||-+. ..+ -+....++ +. .++.+.|.+.=-+|+..+.+
T Consensus 51 dGpVRgv~FH~~qpl--FVSG-----GD-DykIkVWnYk--~rr--clftL~GH-lD-YVRt~~FHheyPWIlSASDD-- 114 (1202)
T KOG0292|consen 51 DGPVRGVDFHPTQPL--FVSG-----GD-DYKIKVWNYK--TRR--CLFTLLGH-LD-YVRTVFFHHEYPWILSASDD-- 114 (1202)
T ss_pred CCccceeeecCCCCe--EEec-----CC-ccEEEEEecc--cce--ehhhhccc-cc-eeEEeeccCCCceEEEccCC--
Confidence 346888999998764 5542 11 4445555444 322 22111111 01 36677788877788766443
Q ss_pred CCCCCCCCCCCCCceeeccccccccchhhhhccCCccchhhhhhheeeEEEEEcC-CC-CceecCCC-ceEEeeeeCCCC
Q 004475 110 RDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DG-TAKDFGTP-AVYTAVEPSPDQ 186 (751)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~G-~~~~lt~~-~~~~~~~~SpDG 186 (751)
..|.+++- ++ .+..+|.+ ..+....|.|..
T Consensus 115 -----------------------------------------------QTIrIWNwqsr~~iavltGHnHYVMcAqFhptE 147 (1202)
T KOG0292|consen 115 -----------------------------------------------QTIRIWNWQSRKCIAVLTGHNHYVMCAQFHPTE 147 (1202)
T ss_pred -----------------------------------------------CeEEEEeccCCceEEEEecCceEEEeeccCCcc
Confidence 24555666 55 55667767 667788899988
Q ss_pred ceEEEEEecCCcccccccCCCceeEEEEeCCCceeeeeccCCCCCCC-----------------CCccCCccCCCceeee
Q 004475 187 KYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDI-----------------PVCYNSVREGMRSISW 249 (751)
Q Consensus 187 ~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~-----------------~~~~~~~~~~~~~~~~ 249 (751)
..|+-.+. .+.+.+||..|-..+...+....+.. -.-+.....|+.-.+|
T Consensus 148 DlIVSaSL-------------DQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAf 214 (1202)
T KOG0292|consen 148 DLIVSASL-------------DQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAF 214 (1202)
T ss_pred ceEEEecc-------------cceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEe
Confidence 87776544 34688999987655544433110000 0122344456666777
Q ss_pred ecCCCceEEEEEeccCCCCccccCcccceeeccCCCCCCCCceE--eEeeceeEE-EEEecCCceEEEeeeecccceeEE
Q 004475 250 RADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEI--LHKLDLRFS-VSWCDDSLALVNETWYKTSQTRTW 326 (751)
Q Consensus 250 spdG~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~--l~~~~~~~~-~~~spdg~~l~~~~~~~~~~~~l~ 326 (751)
+|.=.- |+ +..|+ ..-.||+++- .+.... ...+-..++ +-|.|....|+..+ +....++|
T Consensus 215 hpTlpl-iV--SG~DD--------RqVKlWrmne----tKaWEvDtcrgH~nnVssvlfhp~q~lIlSns--EDksirVw 277 (1202)
T KOG0292|consen 215 HPTLPL-IV--SGADD--------RQVKLWRMNE----TKAWEVDTCRGHYNNVSSVLFHPHQDLILSNS--EDKSIRVW 277 (1202)
T ss_pred cCCcce-EE--ecCCc--------ceeeEEEecc----ccceeehhhhcccCCcceEEecCccceeEecC--CCccEEEE
Confidence 776543 22 22211 1124555543 222221 223344555 77888777665544 23334666
Q ss_pred EecCCCCCCcceeeeecccccccC---CCCCCCeeeCCCCCEEEEeeeecC-----CcceEEEEccCCCCCCCCCceeEE
Q 004475 327 LVCPGSKDVAPRVLFDRVFENVYS---DPGSPMMTRTSTGTNVIAKIKKEN-----DEQIYILLNGRGFTPEGNIPFLDL 398 (751)
Q Consensus 327 ~~~~~~~~~~~~~l~~~~~~~~~~---~~~~~~~~~spDG~~l~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~l~~ 398 (751)
-++-.++ .+.+...-...|. +|.-+.++-..|+-.++|.-.+.- .++.++|+. ..+|+.
T Consensus 278 Dm~kRt~----v~tfrrendRFW~laahP~lNLfAAgHDsGm~VFkleRErpa~~v~~n~LfYvk---------d~~i~~ 344 (1202)
T KOG0292|consen 278 DMTKRTS----VQTFRRENDRFWILAAHPELNLFAAGHDSGMIVFKLERERPAYAVNGNGLFYVK---------DRFIRS 344 (1202)
T ss_pred ecccccc----eeeeeccCCeEEEEEecCCcceeeeecCCceEEEEEcccCceEEEcCCEEEEEc---------cceEEe
Confidence 5544442 3333332222222 222333555566666666654211 123444433 347888
Q ss_pred EecCCCceeEEee
Q 004475 399 FDINTGSKERIWE 411 (751)
Q Consensus 399 ~d~~~g~~~~l~~ 411 (751)
+|+.+.+-..+.+
T Consensus 345 ~d~~t~~d~~v~~ 357 (1202)
T KOG0292|consen 345 YDLRTQKDTAVAS 357 (1202)
T ss_pred eeccccccceeEe
Confidence 8887755455544
No 399
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=96.45 E-value=0.093 Score=53.59 Aligned_cols=157 Identities=15% Similarity=0.114 Sum_probs=97.1
Q ss_pred eEEeecCCCCCCCCcccccCCCCcc-cccceeecCCCCeEEEEEeecccccccCCceeEEEEEcCCCCeeeccCCCCccc
Q 004475 7 IGIHRLLPDDSLGPEKEVHGYPDGA-KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICL 85 (751)
Q Consensus 7 ~~~~~~~~~~~~g~~~~l~~~~~~~-~~~~p~~SPDG~~iaf~~~~~~~~~~~~~~~~l~i~~~~~g~~~~lt~~~~~~~ 85 (751)
+..||+++ +.. +++ +.+.. .++...|||-...|+++. .+.+.|.++|+.....+.++-..+.
T Consensus 135 ~k~~d~s~----a~v-~~~-l~~htDYVR~g~~~~~~~hivvtG---------sYDg~vrl~DtR~~~~~v~elnhg~-- 197 (487)
T KOG0310|consen 135 VKYWDLST----AYV-QAE-LSGHTDYVRCGDISPANDHIVVTG---------SYDGKVRLWDTRSLTSRVVELNHGC-- 197 (487)
T ss_pred EEEEEcCC----cEE-EEE-ecCCcceeEeeccccCCCeEEEec---------CCCceEEEEEeccCCceeEEecCCC--
Confidence 56788888 665 322 22222 578899999999898864 4445555666555434444332222
Q ss_pred cceeeeeEEecCCcEEEEeecCCCCCCCCCCCCCCCCceeeccccccccchhhhhccCCccchhhhhhheeeEEEEEcC-
Q 004475 86 NAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL- 164 (751)
Q Consensus 86 ~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~- 164 (751)
.+..+.+-|.|..|+.. +..++.+||+
T Consensus 198 --pVe~vl~lpsgs~iasA--------------------------------------------------gGn~vkVWDl~ 225 (487)
T KOG0310|consen 198 --PVESVLALPSGSLIASA--------------------------------------------------GGNSVKVWDLT 225 (487)
T ss_pred --ceeeEEEcCCCCEEEEc--------------------------------------------------CCCeEEEEEec
Confidence 26788889999888865 1157888999
Q ss_pred CC--CceecCCC-ceEEeeeeCCCCceEEEEEecCCcccccccCCCceeEEEEeCCCceeeeeccCCCCCCCCCccCCcc
Q 004475 165 DG--TAKDFGTP-AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVR 241 (751)
Q Consensus 165 ~G--~~~~lt~~-~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~ 241 (751)
+| ......++ ..+...++.-|+.+|+-.+-++ .+-+||...-+. +......
T Consensus 226 ~G~qll~~~~~H~KtVTcL~l~s~~~rLlS~sLD~-------------~VKVfd~t~~Kv--v~s~~~~----------- 279 (487)
T KOG0310|consen 226 TGGQLLTSMFNHNKTVTCLRLASDSTRLLSGSLDR-------------HVKVFDTTNYKV--VHSWKYP----------- 279 (487)
T ss_pred CCceehhhhhcccceEEEEEeecCCceEeeccccc-------------ceEEEEccceEE--EEeeecc-----------
Confidence 45 23333435 7888999999999998765543 345666433222 2111111
Q ss_pred CCCceeeeecCCCceEEE
Q 004475 242 EGMRSISWRADKPSTLYW 259 (751)
Q Consensus 242 ~~~~~~~~spdG~~~i~~ 259 (751)
..+-+++.|||+.. ++.
T Consensus 280 ~pvLsiavs~dd~t-~vi 296 (487)
T KOG0310|consen 280 GPVLSIAVSPDDQT-VVI 296 (487)
T ss_pred cceeeEEecCCCce-EEE
Confidence 12347899999887 444
No 400
>PRK13614 lipoprotein LpqB; Provisional
Probab=96.44 E-value=0.36 Score=52.79 Aligned_cols=69 Identities=10% Similarity=0.071 Sum_probs=45.2
Q ss_pred CCcccccCCCCc--ccccceeecCCCCeEEEEEeecccccccCCceeEEEEEcCCCCeeeccCCCCccccceeeeeEEec
Q 004475 19 GPEKEVHGYPDG--AKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVN 96 (751)
Q Consensus 19 g~~~~l~~~~~~--~~~~~p~~SPDG~~iaf~~~~~~~~~~~~~~~~l~i~~~~~g~~~~lt~~~~~~~~~~~~~~~wsp 96 (751)
+....+.+.... ....+|+.|+||+.+|++. .....||+... ++..+.+..+.. +..|.|.+
T Consensus 329 ~~~~pv~g~~g~~~~~~~s~avS~~g~~~A~~~---------~~~~~l~~~~~-g~~~~~~~~g~~------Lt~PS~d~ 392 (573)
T PRK13614 329 GQISPLPDIQSVAGLGPASPAESPVSQTVAFLN---------GSRTTLYTVSP-GQPARALTSGST------LTRPSFSP 392 (573)
T ss_pred CCcccCCCccCcCcccccceeecCCCceEEEec---------CCCcEEEEecC-CCcceeeecCCC------ccCCcccC
Confidence 555555543322 1467899999999999973 22358888776 456666654442 56778988
Q ss_pred CCcEEEEe
Q 004475 97 NSTLLIFT 104 (751)
Q Consensus 97 Dg~~l~~~ 104 (751)
+| +|...
T Consensus 393 ~g-~vWtv 399 (573)
T PRK13614 393 QD-WVWTA 399 (573)
T ss_pred CC-CEEEe
Confidence 88 66644
No 401
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=96.41 E-value=0.18 Score=48.86 Aligned_cols=143 Identities=15% Similarity=0.160 Sum_probs=65.9
Q ss_pred eEEEEEcCCCCc-eec--CCCceEEeeeeCCCCceEEEEEecCCcccccccCCCceeEEEEeCC--Ccee--eeeccCCC
Q 004475 157 AQLVLGSLDGTA-KDF--GTPAVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTD--GKLV--RELCDLPP 229 (751)
Q Consensus 157 ~~l~~~~~~G~~-~~l--t~~~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~--~~~~--~~l~~~~~ 229 (751)
..|+.++++|++ +++ ...++..++++.-+|++++.. ++ ...|++++.+ +... ..+.....
T Consensus 44 ~~i~els~~G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~--Er-----------~~~L~~~~~~~~~~~~~~~~~~~~~l 110 (248)
T PF06977_consen 44 GEIYELSLDGKVLRRIPLDGFGDYEGITYLGNGRYVLSE--ER-----------DQRLYIFTIDDDTTSLDRADVQKISL 110 (248)
T ss_dssp TEEEEEETT--EEEEEE-SS-SSEEEEEE-STTEEEEEE--TT-----------TTEEEEEEE----TT--EEEEEEEE-
T ss_pred CEEEEEcCCCCEEEEEeCCCCCCceeEEEECCCEEEEEE--cC-----------CCcEEEEEEeccccccchhhceEEec
Confidence 478888888843 333 222778899998888665532 21 3457776663 2211 11111110
Q ss_pred CCCCCCccCCccCCCceeeeecCCCceEEEEEeccCCCCccccCcccceeeccCCCCCCCCceEeEe--------eceeE
Q 004475 230 AEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHK--------LDLRF 301 (751)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~spdG~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~--------~~~~~ 301 (751)
. .....+.+.-+++|+|.++++++..+ . ....||-++... .+........ .-...
T Consensus 111 ~-----~~~~~N~G~EGla~D~~~~~L~v~kE-~----------~P~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~d~ 173 (248)
T PF06977_consen 111 G-----FPNKGNKGFEGLAYDPKTNRLFVAKE-R----------KPKRLYEVNGFP-GGFDLFVSDDQDLDDDKLFVRDL 173 (248)
T ss_dssp -------S---SS--EEEEEETTTTEEEEEEE-S----------SSEEEEEEESTT--SS--EEEE-HHHH-HT--SS--
T ss_pred c-----cccCCCcceEEEEEcCCCCEEEEEeC-C----------CChhhEEEcccc-Cccceeeccccccccccceeccc
Confidence 0 00122334558999999999444432 1 112456555410 0111111111 12234
Q ss_pred E-EEEecCCceEEEeeeecccceeEEEecCCC
Q 004475 302 S-VSWCDDSLALVNETWYKTSQTRTWLVCPGS 332 (751)
Q Consensus 302 ~-~~~spdg~~l~~~~~~~~~~~~l~~~~~~~ 332 (751)
+ +++.|....|+..+. ....|..++.++
T Consensus 174 S~l~~~p~t~~lliLS~---es~~l~~~d~~G 202 (248)
T PF06977_consen 174 SGLSYDPRTGHLLILSD---ESRLLLELDRQG 202 (248)
T ss_dssp -EEEEETTTTEEEEEET---TTTEEEEE-TT-
T ss_pred cceEEcCCCCeEEEEEC---CCCeEEEECCCC
Confidence 5 788888777776662 235788888766
No 402
>PRK13615 lipoprotein LpqB; Provisional
Probab=96.38 E-value=0.4 Score=52.24 Aligned_cols=174 Identities=14% Similarity=0.072 Sum_probs=94.7
Q ss_pred CCcccccCCCCc-c--cccceeecCCCCeEEEEEeecccccccCCceeEEEEEcCCCCeeeccCCCCccccceeeeeEEe
Q 004475 19 GPEKEVHGYPDG-A--KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWV 95 (751)
Q Consensus 19 g~~~~l~~~~~~-~--~~~~p~~SPDG~~iaf~~~~~~~~~~~~~~~~l~i~~~~~g~~~~lt~~~~~~~~~~~~~~~ws 95 (751)
+..+.+.+.... . ...+++.|+||+.+|++. ....||+-.. ++..+.+.... .+..|.|.
T Consensus 319 ~~~~pv~g~~~~~~~~~~~s~avS~dg~~~A~v~----------~~~~l~vg~~-~~~~~~~~~~~------~Lt~PS~d 381 (557)
T PRK13615 319 GTVTPLGTLGTRVTALQADAATLSADGRQAAVRN----------ASGVWSVGDG-DRDAVLLDTRP------GLVAPSLD 381 (557)
T ss_pred CcceecCCcccccCccccccceEcCCCceEEEEc----------CCceEEEecC-CCcceeeccCC------ccccCcCc
Confidence 555555433221 1 237899999999999973 1236776653 35566664433 25678999
Q ss_pred cCCcEEEEeecCCCCCCCCCCCCCCCCceeeccccccccchhhhhccCCccchhhhhhheeeEEEEEcCCCCceecCC--
Q 004475 96 NNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSLDGTAKDFGT-- 173 (751)
Q Consensus 96 pDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~G~~~~lt~-- 173 (751)
++| ++....... . ..+.....+|+...+.-
T Consensus 382 ~~g-~vWtv~~g~-~----------------------------------------------~~l~~~~~~G~~~~v~v~~ 413 (557)
T PRK13615 382 AQG-YVWSTPASD-P----------------------------------------------RGLVAWGPDGVGHPVAVSW 413 (557)
T ss_pred CCC-CEEEEeCCC-c----------------------------------------------eEEEEecCCCceEEeeccc
Confidence 998 666542210 0 22333333454333321
Q ss_pred --CceEEeeeeCCCCceEEEEEecCCcccccccCCCceeEEE--EeCCCceeeee-ccCCCCCCCCCccCCccCCCceee
Q 004475 174 --PAVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQV--WTTDGKLVREL-CDLPPAEDIPVCYNSVREGMRSIS 248 (751)
Q Consensus 174 --~~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~l~~--~d~~~~~~~~l-~~~~~~~~~~~~~~~~~~~~~~~~ 248 (751)
...+..+..|+||-++++...... ..+|++ +..+++.++.| +.. ..+......+..+.
T Consensus 414 ~~~~~I~~lrvSrDG~R~Avi~~~~g----------~~~V~va~V~R~~~~P~~L~~~p-------~~l~~~l~~v~sl~ 476 (557)
T PRK13615 414 TATGRVVSLEVARDGARVLVQLETGA----------GPQLLVASIVRDGGVPTSLTTTP-------LELLASPGTPLDAT 476 (557)
T ss_pred cCCCeeEEEEeCCCccEEEEEEecCC----------CCEEEEEEEEeCCCcceEeeecc-------EEcccCcCcceeeE
Confidence 256889999999999999765322 123443 22244434455 221 00111112355889
Q ss_pred eecCCCceEEEEEeccCCCCccccCcccceeeccCC
Q 004475 249 WRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAE 284 (751)
Q Consensus 249 ~spdG~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~ 284 (751)
|..++.- ++... ..+ ...+++++.+.
T Consensus 477 W~~~~~l-aVl~~-~~~--------~~~~v~~v~v~ 502 (557)
T PRK13615 477 WVDELDV-ATLTL-APD--------GERQVELHQVG 502 (557)
T ss_pred EcCCCEE-EEEec-cCC--------CCceEEEEECC
Confidence 9999984 44432 111 22357777774
No 403
>KOG3967 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.37 E-value=0.022 Score=51.53 Aligned_cols=112 Identities=16% Similarity=0.068 Sum_probs=59.5
Q ss_pred ccEEEEEcCCCCcCcccCCccc-CCCCccCCCCchHHHHHHhCCeEEEEcCCCCCCCCCC-CCCCchhHHHHHHHHHHHH
Q 004475 512 LPCLFWAYPEDYKSKDAAGQVR-GSPNEFSGMTPTSSLIFLARRFAVLAGPSIPIIGEGD-KLPNDRFVEQLVSSAEAAV 589 (751)
Q Consensus 512 ~P~vv~~HGg~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~G~~v~~~~~~~~~g~g~-~~~~~~~~~~~~~d~~~~v 589 (751)
..++|++||.|....+...... -+-+.-.+..-.......+.||-|+..+..+.+-.-+ ...+..+....++-+.-+-
T Consensus 101 ~kLlVLIHGSGvVrAGQWARrLIIN~~Ld~GTQiPyi~rAv~~Gygviv~N~N~~~kfye~k~np~kyirt~veh~~yvw 180 (297)
T KOG3967|consen 101 QKLLVLIHGSGVVRAGQWARRLIINEDLDSGTQIPYIKRAVAEGYGVIVLNPNRERKFYEKKRNPQKYIRTPVEHAKYVW 180 (297)
T ss_pred cceEEEEecCceEecchHhhhhhhccccccCCcChHHHHHHHcCCcEEEeCCchhhhhhhcccCcchhccchHHHHHHHH
Confidence 5689999998855443322111 1111112222233445567899988733211111101 1112222223333333333
Q ss_pred HHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCc
Q 004475 590 EEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHL 625 (751)
Q Consensus 590 ~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~p~~ 625 (751)
..+... ..+..|+++.||+||.+++.++.+.|+.
T Consensus 181 ~~~v~p--a~~~sv~vvahsyGG~~t~~l~~~f~~d 214 (297)
T KOG3967|consen 181 KNIVLP--AKAESVFVVAHSYGGSLTLDLVERFPDD 214 (297)
T ss_pred HHHhcc--cCcceEEEEEeccCChhHHHHHHhcCCc
Confidence 334332 3467899999999999999999998753
No 404
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.33 E-value=0.65 Score=44.98 Aligned_cols=117 Identities=14% Similarity=0.125 Sum_probs=67.4
Q ss_pred ceEEeeeeCCCCceEEEEEecCCcccccccCCCceeEEEEeCCCceeeeeccCCCCCCCCCccCCccCCCceeeeecCCC
Q 004475 175 AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKP 254 (751)
Q Consensus 175 ~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~spdG~ 254 (751)
..+.+.+|+||.+.|+.+.+. +..|.-.+.+|.-++.+.-. +- .+ .-.+.|.-+|+
T Consensus 86 ~nvS~LTynp~~rtLFav~n~------------p~~iVElt~~GdlirtiPL~-g~--------~D---pE~Ieyig~n~ 141 (316)
T COG3204 86 ANVSSLTYNPDTRTLFAVTNK------------PAAIVELTKEGDLIRTIPLT-GF--------SD---PETIEYIGGNQ 141 (316)
T ss_pred ccccceeeCCCcceEEEecCC------------CceEEEEecCCceEEEeccc-cc--------CC---hhHeEEecCCE
Confidence 558899999999999877554 33566667777655554211 11 11 11567777776
Q ss_pred ceEEEEEeccCCCCccccCcccceeeccCCCCCCC----Cc-eEeEe---eceeEE-EEEecCCceEEEeeeecccceeE
Q 004475 255 STLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGE----KP-EILHK---LDLRFS-VSWCDDSLALVNETWYKTSQTRT 325 (751)
Q Consensus 255 ~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~----~~-~~l~~---~~~~~~-~~~spdg~~l~~~~~~~~~~~~l 325 (751)
+ ++.-+ .+..|+.+.+++.+.- .. ..|.. .+-.+. .+|+|..++|++..++.+ ..|
T Consensus 142 f-vi~dE------------R~~~l~~~~vd~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P--~~I 206 (316)
T COG3204 142 F-VIVDE------------RDRALYLFTVDADTTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNP--IGI 206 (316)
T ss_pred E-EEEeh------------hcceEEEEEEcCCccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCC--cEE
Confidence 5 33211 2245666655422110 00 01111 133455 899999999999886654 467
Q ss_pred EEecC
Q 004475 326 WLVCP 330 (751)
Q Consensus 326 ~~~~~ 330 (751)
|.++.
T Consensus 207 ~~~~~ 211 (316)
T COG3204 207 FEVTQ 211 (316)
T ss_pred EEEec
Confidence 77763
No 405
>PF05990 DUF900: Alpha/beta hydrolase of unknown function (DUF900); InterPro: IPR010297 This domain is associated with proteins of unknown function, which are hydrolase-like.
Probab=96.33 E-value=0.015 Score=56.19 Aligned_cols=84 Identities=13% Similarity=0.087 Sum_probs=52.7
Q ss_pred HHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhC----C-----CceeEEEEccCCCCCCCCccCccccccc
Q 004475 581 LVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHA----P-----HLFCCGIARSGSYNKTLTPFGFQTEFRT 651 (751)
Q Consensus 581 ~~~d~~~~v~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~----p-----~~~~~~v~~~~~~d~~~~~~~~~~~~~~ 651 (751)
....+.+.++.|.+.. ...+|.|++||||+.+.+.++..- + .+|..+++.+|-++....
T Consensus 75 s~~~l~~~L~~L~~~~--~~~~I~ilaHSMG~rv~~~aL~~l~~~~~~~~~~~~~~~viL~ApDid~d~f---------- 142 (233)
T PF05990_consen 75 SGPALARFLRDLARAP--GIKRIHILAHSMGNRVLLEALRQLASEGERPDVKARFDNVILAAPDIDNDVF---------- 142 (233)
T ss_pred HHHHHHHHHHHHHhcc--CCceEEEEEeCchHHHHHHHHHHHHhcccchhhHhhhheEEEECCCCCHHHH----------
Confidence 3455566666666552 347999999999999999886542 1 246677777775442110
Q ss_pred chhhHHHHHhcCcccccCCCCCCEEEEEcCCCCCC
Q 004475 652 LWEATNVYIEMSPITHANKIKKPILIIHGEVDDKV 686 (751)
Q Consensus 652 ~~~~~~~~~~~~~~~~~~~~~~P~li~~G~~D~~v 686 (751)
...+. .+.+...++.+.+..+|...
T Consensus 143 ----~~~~~------~~~~~~~~itvy~s~~D~AL 167 (233)
T PF05990_consen 143 ----RSQLP------DLGSSARRITVYYSRNDRAL 167 (233)
T ss_pred ----HHHHH------HHhhcCCCEEEEEcCCchHH
Confidence 00000 23334478999999999753
No 406
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=96.31 E-value=0.21 Score=49.47 Aligned_cols=121 Identities=12% Similarity=0.132 Sum_probs=72.5
Q ss_pred EEEEEcC-CC-CceecCCCceEEeeeeCCCCceEEEEEecCCcccccccCCCceeEEEEeCCCceeeeeccCCCCCCCCC
Q 004475 158 QLVLGSL-DG-TAKDFGTPAVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPV 235 (751)
Q Consensus 158 ~l~~~~~-~G-~~~~lt~~~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~ 235 (751)
.|..+|+ +| ....++....+..+..+|+.+.|+-.+.+ ..|.+||+.++.-..+..
T Consensus 282 TIk~WDletg~~~~~~~~~ksl~~i~~~~~~~Ll~~gssd-------------r~irl~DPR~~~gs~v~~--------- 339 (423)
T KOG0313|consen 282 TIKVWDLETGGLKSTLTTNKSLNCISYSPLSKLLASGSSD-------------RHIRLWDPRTGDGSVVSQ--------- 339 (423)
T ss_pred eEEEEEeecccceeeeecCcceeEeecccccceeeecCCC-------------CceeecCCCCCCCceeEE---------
Confidence 5777888 55 55666666778899999999888765544 368899997553221110
Q ss_pred ccCCccCCCceeeeecCCCceEEEEEeccCCCCccccCcccceeeccCCCCCCCCceEeEeeceeEE-EEEecCCceEEE
Q 004475 236 CYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFS-VSWCDDSLALVN 314 (751)
Q Consensus 236 ~~~~~~~~~~~~~~spdG~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~-~~~spdg~~l~~ 314 (751)
.|.....-+..+.|+|...+.++-.+ ..+.+.++|+- .+.+....|...+..+- +.|.. |..|+-
T Consensus 340 s~~gH~nwVssvkwsp~~~~~~~S~S------------~D~t~klWDvR-S~k~plydI~~h~DKvl~vdW~~-~~~IvS 405 (423)
T KOG0313|consen 340 SLIGHKNWVSSVKWSPTNEFQLVSGS------------YDNTVKLWDVR-STKAPLYDIAGHNDKVLSVDWNE-GGLIVS 405 (423)
T ss_pred eeecchhhhhheecCCCCceEEEEEe------------cCCeEEEEEec-cCCCcceeeccCCceEEEEeccC-CceEEe
Confidence 11122223557899999988433333 34577777763 22234455555555555 67753 444543
No 407
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=96.30 E-value=0.44 Score=46.16 Aligned_cols=76 Identities=14% Similarity=0.198 Sum_probs=43.1
Q ss_pred EEEEEcCCC--CceecCCC-ceEEeeeeCCCCceEEEEEecCCcccccccCCCceeEEEEeCCCceeeeeccCCCCCCCC
Q 004475 158 QLVLGSLDG--TAKDFGTP-AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIP 234 (751)
Q Consensus 158 ~l~~~~~~G--~~~~lt~~-~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~ 234 (751)
+|.+++... ....+..+ +.+..++..|.||.-+-... ...|.+||+-.++.-.+....
T Consensus 108 ~i~iw~~~~W~~~~slK~H~~~Vt~lsiHPS~KLALsVg~-------------D~~lr~WNLV~Gr~a~v~~L~------ 168 (362)
T KOG0294|consen 108 HIIIWRVGSWELLKSLKAHKGQVTDLSIHPSGKLALSVGG-------------DQVLRTWNLVRGRVAFVLNLK------ 168 (362)
T ss_pred cEEEEEcCCeEEeeeecccccccceeEecCCCceEEEEcC-------------CceeeeehhhcCccceeeccC------
Confidence 455555422 22333334 55778999999985443322 235778988765443332221
Q ss_pred CccCCccCCCceeeeecCCCceEEE
Q 004475 235 VCYNSVREGMRSISWRADKPSTLYW 259 (751)
Q Consensus 235 ~~~~~~~~~~~~~~~spdG~~~i~~ 259 (751)
.....+.|+|.|.++++.
T Consensus 169 -------~~at~v~w~~~Gd~F~v~ 186 (362)
T KOG0294|consen 169 -------NKATLVSWSPQGDHFVVS 186 (362)
T ss_pred -------CcceeeEEcCCCCEEEEE
Confidence 112247999999983443
No 408
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=96.29 E-value=2.6 Score=48.83 Aligned_cols=60 Identities=13% Similarity=0.222 Sum_probs=41.7
Q ss_pred ceEEeeeeCCCCceEEEEEecCCcccccccCCCceeEEEEeCCCceeeeeccCCCCCCCCCccCCccCCCceeeeecCCC
Q 004475 175 AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKP 254 (751)
Q Consensus 175 ~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~spdG~ 254 (751)
..+.++.|--|+..|.+.... .++.++|+++...+.+.. ...|+...+||||+.
T Consensus 69 ~~i~s~~fl~d~~~i~v~~~~-------------G~iilvd~et~~~eivg~-------------vd~GI~aaswS~Dee 122 (1265)
T KOG1920|consen 69 DEIVSVQFLADTNSICVITAL-------------GDIILVDPETLELEIVGN-------------VDNGISAASWSPDEE 122 (1265)
T ss_pred cceEEEEEecccceEEEEecC-------------CcEEEEcccccceeeeee-------------ccCceEEEeecCCCc
Confidence 456778888888888776433 357788888776655422 235567889999999
Q ss_pred ceEEEEE
Q 004475 255 STLYWVE 261 (751)
Q Consensus 255 ~~i~~~~ 261 (751)
. ++++.
T Consensus 123 ~-l~liT 128 (1265)
T KOG1920|consen 123 L-LALIT 128 (1265)
T ss_pred E-EEEEe
Confidence 8 55554
No 409
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=96.27 E-value=1.2 Score=43.35 Aligned_cols=119 Identities=12% Similarity=0.098 Sum_probs=69.3
Q ss_pred eEEEEEcCCC--CceecCCC-ceEEeeeeCCCCc--eEEEEEecCCcccccccCCCceeEEEEeCCCceeeeeccCCCCC
Q 004475 157 AQLVLGSLDG--TAKDFGTP-AVYTAVEPSPDQK--YVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAE 231 (751)
Q Consensus 157 ~~l~~~~~~G--~~~~lt~~-~~~~~~~~SpDG~--~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~ 231 (751)
..|.++|+.. +...|..+ +.+....|+++-. +|+-.+. +..+.+|+...= ..+
T Consensus 63 etI~IYDm~k~~qlg~ll~HagsitaL~F~~~~S~shLlS~sd-------------DG~i~iw~~~~W--~~~------- 120 (362)
T KOG0294|consen 63 ETIHIYDMRKRKQLGILLSHAGSITALKFYPPLSKSHLLSGSD-------------DGHIIIWRVGSW--ELL------- 120 (362)
T ss_pred CcEEEEeccchhhhcceeccccceEEEEecCCcchhheeeecC-------------CCcEEEEEcCCe--EEe-------
Confidence 3677888833 55566666 7788888888875 5654433 335777876532 111
Q ss_pred CCCCccCCccCCCceeeeecCCCceEEEEEeccCCCCccccCcccceeeccCCCCCCCCceEeEeeceeEE-EEEecCCc
Q 004475 232 DIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFS-VSWCDDSL 310 (751)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~spdG~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~-~~~spdg~ 310 (751)
..+.+....+..++.+|.|+- ++.- .....|.++++- .+...-+........ +.|+|.|.
T Consensus 121 ---~slK~H~~~Vt~lsiHPS~KL--ALsV-----------g~D~~lr~WNLV---~Gr~a~v~~L~~~at~v~w~~~Gd 181 (362)
T KOG0294|consen 121 ---KSLKAHKGQVTDLSIHPSGKL--ALSV-----------GGDQVLRTWNLV---RGRVAFVLNLKNKATLVSWSPQGD 181 (362)
T ss_pred ---eeecccccccceeEecCCCce--EEEE-----------cCCceeeeehhh---cCccceeeccCCcceeeEEcCCCC
Confidence 112222333568899999995 3321 122456666663 222222333333334 79999999
Q ss_pred eEEEee
Q 004475 311 ALVNET 316 (751)
Q Consensus 311 ~l~~~~ 316 (751)
+++...
T Consensus 182 ~F~v~~ 187 (362)
T KOG0294|consen 182 HFVVSG 187 (362)
T ss_pred EEEEEe
Confidence 887765
No 410
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=96.27 E-value=0.44 Score=45.54 Aligned_cols=113 Identities=18% Similarity=0.275 Sum_probs=73.2
Q ss_pred cccceeecCCCCeEEEEEeecccccccCCceeEEEEEcCCCCee---eccCCCCccccceeeeeEEec--CCcEEEEeec
Q 004475 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAK---PLFESPDICLNAVFGSFVWVN--NSTLLIFTIP 106 (751)
Q Consensus 32 ~~~~p~~SPDG~~iaf~~~~~~~~~~~~~~~~l~i~~~~~g~~~---~lt~~~~~~~~~~~~~~~wsp--Dg~~l~~~~~ 106 (751)
.+.-.-|-|++.+||-+. .++|-+++++.+..+ .+... .....-.+.+-+||| ||..++.+..
T Consensus 125 ~i~cvew~Pns~klasm~-----------dn~i~l~~l~ess~~vaev~ss~-s~e~~~~ftsg~WspHHdgnqv~tt~d 192 (370)
T KOG1007|consen 125 KINCVEWEPNSDKLASMD-----------DNNIVLWSLDESSKIVAEVLSSE-SAEMRHSFTSGAWSPHHDGNQVATTSD 192 (370)
T ss_pred ceeeEEEcCCCCeeEEec-----------cCceEEEEcccCcchheeecccc-cccccceecccccCCCCccceEEEeCC
Confidence 467788999999999974 256777777665431 12211 111111245669998 8998887732
Q ss_pred CCCCCCCCCCCCCCCCceeeccccccccchhhhhccCCccchhhhhhheeeEEEEEcC-CC-CceecCCC--ceEEeeee
Q 004475 107 SSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DG-TAKDFGTP--AVYTAVEP 182 (751)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~G-~~~~lt~~--~~~~~~~~ 182 (751)
+.|+.+|+ +- +.-.|-+. ..+.++.|
T Consensus 193 --------------------------------------------------~tl~~~D~RT~~~~~sI~dAHgq~vrdlDf 222 (370)
T KOG1007|consen 193 --------------------------------------------------STLQFWDLRTMKKNNSIEDAHGQRVRDLDF 222 (370)
T ss_pred --------------------------------------------------CcEEEEEccchhhhcchhhhhcceeeeccC
Confidence 46666776 22 33344333 45778999
Q ss_pred CCCCceEEEEEecCCcccccccCCCceeEEEEeCCC
Q 004475 183 SPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDG 218 (751)
Q Consensus 183 SpDG~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~ 218 (751)
.|.-++++++..+. .-+.+||...
T Consensus 223 Npnkq~~lvt~gDd------------gyvriWD~R~ 246 (370)
T KOG1007|consen 223 NPNKQHILVTCGDD------------GYVRIWDTRK 246 (370)
T ss_pred CCCceEEEEEcCCC------------ccEEEEeccC
Confidence 99999999987653 3467888763
No 411
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=96.27 E-value=1.4 Score=43.66 Aligned_cols=178 Identities=11% Similarity=0.073 Sum_probs=111.7
Q ss_pred cccceeecCCCCeEEEEEeecccccccCCceeEEEEEcCCCCeeeccC-CCCccccceeeeeEEecCCcEEEEeecCCCC
Q 004475 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFE-SPDICLNAVFGSFVWVNNSTLLIFTIPSSRR 110 (751)
Q Consensus 32 ~~~~p~~SPDG~~iaf~~~~~~~~~~~~~~~~l~i~~~~~g~~~~lt~-~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~ 110 (751)
++....+-|-.+|++.- .....+-|+|+++|+.+.-.. .-. .+..++.|+---+|+....+
T Consensus 153 WVr~vavdP~n~wf~tg----------s~DrtikIwDlatg~LkltltGhi~-----~vr~vavS~rHpYlFs~ged--- 214 (460)
T KOG0285|consen 153 WVRSVAVDPGNEWFATG----------SADRTIKIWDLATGQLKLTLTGHIE-----TVRGVAVSKRHPYLFSAGED--- 214 (460)
T ss_pred eEEEEeeCCCceeEEec----------CCCceeEEEEcccCeEEEeecchhh-----eeeeeeecccCceEEEecCC---
Confidence 67778888887777763 455788899999998665332 222 46788999988888766332
Q ss_pred CCCCCCCCCCCCceeeccccccccchhhhhccCCccchhhhhhheeeEEEEEcC-CCCceecCC-C-ceEEeeeeCCCCc
Q 004475 111 DPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DGTAKDFGT-P-AVYTAVEPSPDQK 187 (751)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~G~~~~lt~-~-~~~~~~~~SpDG~ 187 (751)
.++..+|+ ..+..+--. + ..+..++..|.=.
T Consensus 215 ----------------------------------------------k~VKCwDLe~nkvIR~YhGHlS~V~~L~lhPTld 248 (460)
T KOG0285|consen 215 ----------------------------------------------KQVKCWDLEYNKVIRHYHGHLSGVYCLDLHPTLD 248 (460)
T ss_pred ----------------------------------------------CeeEEEechhhhhHHHhccccceeEEEeccccce
Confidence 47888888 444433322 2 6677888888877
Q ss_pred eEEEEEecCCcccccccCCCceeEEEEeCCCceee-eeccCCCCCCCCCccCCccCCCceeeeecCCCceEEEEEeccCC
Q 004475 188 YVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVR-ELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRG 266 (751)
Q Consensus 188 ~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~spdG~~~i~~~~~~~~~ 266 (751)
.|+.... ...+.+||+.++... .|..+... +..+.+.|-... |+-.+
T Consensus 249 vl~t~gr-------------Dst~RvWDiRtr~~V~~l~GH~~~-------------V~~V~~~~~dpq-vit~S----- 296 (460)
T KOG0285|consen 249 VLVTGGR-------------DSTIRVWDIRTRASVHVLSGHTNP-------------VASVMCQPTDPQ-VITGS----- 296 (460)
T ss_pred eEEecCC-------------cceEEEeeecccceEEEecCCCCc-------------ceeEEeecCCCc-eEEec-----
Confidence 7765432 346789999876533 33323222 223444444444 44443
Q ss_pred CCccccCcccceeeccCCCCCCCCceEeEeeceeEE-EEEecCCceEEE
Q 004475 267 DANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFS-VSWCDDSLALVN 314 (751)
Q Consensus 267 ~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~-~~~spdg~~l~~ 314 (751)
....+.++|+.. +.....++.....+. ....|.-..++-
T Consensus 297 -------~D~tvrlWDl~a--gkt~~tlt~hkksvral~lhP~e~~fAS 336 (460)
T KOG0285|consen 297 -------HDSTVRLWDLRA--GKTMITLTHHKKSVRALCLHPKENLFAS 336 (460)
T ss_pred -------CCceEEEeeecc--CceeEeeecccceeeEEecCCchhhhhc
Confidence 345788888742 445666677666666 677776665544
No 412
>PF00450 Peptidase_S10: Serine carboxypeptidase; InterPro: IPR001563 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to MEROPS peptidase family S10 (clan SC). The type example is carboxypeptidase Y from Saccharomyces cerevisiae (Baker's yeast) []. All known carboxypeptidases are either metallo carboxypeptidases or serine carboxypeptidases (3.4.16.5 from EC and 3.4.16.6 from EC). The catalytic activity of the serine carboxypeptidases, like that of the trypsin family serine proteases, is provided by a charge relay system involving an aspartic acid residue hydrogen-bonded to a histidine, which is itself hydrogen-bonded to a serine []. The sequences surrounding the active site serine and histidine residues are highly conserved in all the serine carboxypeptidases.; GO: 0004185 serine-type carboxypeptidase activity, 0006508 proteolysis; PDB: 1AC5_A 1WHS_B 3SC2_B 1WHT_A 1BCR_A 1BCS_A 1GXS_A 1IVY_A 1WPX_A 1YSC_A ....
Probab=96.19 E-value=0.026 Score=60.64 Aligned_cols=148 Identities=11% Similarity=-0.000 Sum_probs=77.3
Q ss_pred EEEEcCCCceEEEEEEcCCCCCCCCCCCccEEEEEcCCCCcCcccCCccc-CCCCccCCC----CchHHHHHHhCCeEEE
Q 004475 484 IKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVR-GSPNEFSGM----TPTSSLIFLARRFAVL 558 (751)
Q Consensus 484 i~~~~~~~~~i~~~~~~P~~~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~-~~~~~~~~~----~~~~~~~~~~~G~~v~ 558 (751)
+.+....+..+..|++...+ ++ ...|+||++.|||..+.-. +.+. -+|-....- .......+.+. ..+|
T Consensus 16 l~~~~~~~~~lfyw~~~s~~-~~---~~~Pl~~wlnGGPG~SS~~-g~f~e~GP~~~~~~~~~~l~~n~~sW~~~-an~l 89 (415)
T PF00450_consen 16 LPVNDNENAHLFYWFFESRN-DP---EDDPLILWLNGGPGCSSMW-GLFGENGPFRINPDGPYTLEDNPYSWNKF-ANLL 89 (415)
T ss_dssp EEECTTTTEEEEEEEEE-SS-GG---CSS-EEEEEE-TTTB-THH-HHHCTTSSEEEETTSTSEEEE-TT-GGGT-SEEE
T ss_pred EecCCCCCcEEEEEEEEeCC-CC---CCccEEEEecCCceecccc-ccccccCceEEeecccccccccccccccc-cceE
Confidence 33433345567777775443 22 2379999999997554311 1111 122222200 00111122222 4555
Q ss_pred EcCCCCCCCCCCCCCCch---hHHHHHHHHHHHH-HHHHHcCCCCCCcEEEEEeChHHHHHHHHHHh----C------CC
Q 004475 559 AGPSIPIIGEGDKLPNDR---FVEQLVSSAEAAV-EEVVRRGVADPSRIAVGGHSYGAFMTAHLLAH----A------PH 624 (751)
Q Consensus 559 ~~~~~~~~g~g~~~~~~~---~~~~~~~d~~~~v-~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~----~------p~ 624 (751)
.+|.+-..|++....... ..+...+|+..++ .|+...+.....++.|.|-|+||..+..+|.. . +-
T Consensus 90 ~iD~PvGtGfS~~~~~~~~~~~~~~~a~~~~~fl~~f~~~~p~~~~~~~yi~GESYgG~yvP~~a~~i~~~~~~~~~~~i 169 (415)
T PF00450_consen 90 FIDQPVGTGFSYGNDPSDYVWNDDQAAEDLYEFLQQFFQKFPEYRSNPLYIAGESYGGHYVPALASYILQQNKKGDQPKI 169 (415)
T ss_dssp EE--STTSTT-EESSGGGGS-SHHHHHHHHHHHHHHHHHHSGGGTTSEEEEEEETTHHHHHHHHHHHHHHHTCC--STTS
T ss_pred EEeecCceEEeeccccccccchhhHHHHHHHHHHHHhhhhhhhccCCCEEEEccccccccchhhHHhhhhcccccccccc
Confidence 556555667655433332 2345566666666 34444455666789999999999988777643 2 22
Q ss_pred ceeEEEEccCCCC
Q 004475 625 LFCCGIARSGSYN 637 (751)
Q Consensus 625 ~~~~~v~~~~~~d 637 (751)
.++++++.+|+++
T Consensus 170 nLkGi~IGng~~d 182 (415)
T PF00450_consen 170 NLKGIAIGNGWID 182 (415)
T ss_dssp EEEEEEEESE-SB
T ss_pred ccccceecCcccc
Confidence 4889999998865
No 413
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=96.18 E-value=0.26 Score=51.81 Aligned_cols=119 Identities=13% Similarity=0.160 Sum_probs=65.7
Q ss_pred eEEEEEcCCCCceecC---CCceEEeeeeCCCCceEEEEEecCCcccccccCCCceeEEEEeCCCceee-eeccCCCCCC
Q 004475 157 AQLVLGSLDGTAKDFG---TPAVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVR-ELCDLPPAED 232 (751)
Q Consensus 157 ~~l~~~~~~G~~~~lt---~~~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~-~l~~~~~~~~ 232 (751)
..+.+..++....+.. ..+.+..+.|.|---++++.... .+.+||+...++. .|.
T Consensus 546 ~~VliHQLSK~~sQ~PF~kskG~vq~v~FHPs~p~lfVaTq~--------------~vRiYdL~kqelvKkL~------- 604 (733)
T KOG0650|consen 546 KSVLIHQLSKRKSQSPFRKSKGLVQRVKFHPSKPYLFVATQR--------------SVRIYDLSKQELVKKLL------- 604 (733)
T ss_pred ceEEEEecccccccCchhhcCCceeEEEecCCCceEEEEecc--------------ceEEEehhHHHHHHHHh-------
Confidence 4566667754222222 12778899999999888887533 5778888654321 111
Q ss_pred CCCccCCccCCCceeeeecCCCceEEEEEeccCCCCccccCcccceeeccCCCCCCCCceEeEee---------ceeEE-
Q 004475 233 IPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKL---------DLRFS- 302 (751)
Q Consensus 233 ~~~~~~~~~~~~~~~~~spdG~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~---------~~~~~- 302 (751)
..-.-+..++.+|.|.. |+..+ ....+..+|++ ......+.+.-+ ...+.
T Consensus 605 ------tg~kwiS~msihp~GDn-li~gs------------~d~k~~WfDld-lsskPyk~lr~H~~avr~Va~H~ryPL 664 (733)
T KOG0650|consen 605 ------TGSKWISSMSIHPNGDN-LILGS------------YDKKMCWFDLD-LSSKPYKTLRLHEKAVRSVAFHKRYPL 664 (733)
T ss_pred ------cCCeeeeeeeecCCCCe-EEEec------------CCCeeEEEEcc-cCcchhHHhhhhhhhhhhhhhccccce
Confidence 11123457899999999 44433 22456666663 222222222111 11222
Q ss_pred -EEEecCCceEEEee
Q 004475 303 -VSWCDDSLALVNET 316 (751)
Q Consensus 303 -~~~spdg~~l~~~~ 316 (751)
.+-|+||..++|-.
T Consensus 665 fas~sdDgtv~Vfhg 679 (733)
T KOG0650|consen 665 FASGSDDGTVIVFHG 679 (733)
T ss_pred eeeecCCCcEEEEee
Confidence 34578888887755
No 414
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=96.18 E-value=0.89 Score=49.05 Aligned_cols=87 Identities=16% Similarity=0.304 Sum_probs=49.6
Q ss_pred eEEeecCCCCCCCCcccccCC---------CC-cccccceeecCCCCeEEEEEeecccccccCCceeEEEEEcCCCC-ee
Q 004475 7 IGIHRLLPDDSLGPEKEVHGY---------PD-GAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGE-AK 75 (751)
Q Consensus 7 ~~~~~~~~~~~~g~~~~l~~~---------~~-~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~~~~~l~i~~~~~g~-~~ 75 (751)
+.|.-|.+++.+++.+-|... .+ ...++.++|.-.-++|-.. +.++.--||. +-.|. ..
T Consensus 38 LKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtS--------Dt~GlIiVWm--lykgsW~E 107 (1189)
T KOG2041|consen 38 LKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTS--------DTSGLIIVWM--LYKGSWCE 107 (1189)
T ss_pred eEEEEccccCCcccccccccccccchhhhhccCcceEEEEEecccccccccc--------CCCceEEEEe--eecccHHH
Confidence 566667776677766654321 11 1256778888887777552 1133344443 33444 23
Q ss_pred eccCCCCccccceeeeeEEecCCcEEEEeec
Q 004475 76 PLFESPDICLNAVFGSFVWVNNSTLLIFTIP 106 (751)
Q Consensus 76 ~lt~~~~~~~~~~~~~~~wspDg~~l~~~~~ 106 (751)
.++....- ..+.+.+|..||+.|+..-.
T Consensus 108 EMiNnRnK---SvV~SmsWn~dG~kIcIvYe 135 (1189)
T KOG2041|consen 108 EMINNRNK---SVVVSMSWNLDGTKICIVYE 135 (1189)
T ss_pred HHhhCcCc---cEEEEEEEcCCCcEEEEEEc
Confidence 33322211 14678999999999987744
No 415
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=96.17 E-value=0.11 Score=56.20 Aligned_cols=182 Identities=14% Similarity=0.116 Sum_probs=114.6
Q ss_pred cceeEEeecCCCCCCCCcccccCCCCcc-cccceeecCCCCeEEEEEeecccccccCCceeEEEEEcCCCCeeeccCCCC
Q 004475 4 FTGIGIHRLLPDDSLGPEKEVHGYPDGA-KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPD 82 (751)
Q Consensus 4 ~~~~~~~~~~~~~~~g~~~~l~~~~~~~-~~~~p~~SPDG~~iaf~~~~~~~~~~~~~~~~l~i~~~~~g~~~~lt~~~~ 82 (751)
...|-+|||+- . +..++++.+.+.. .+....|++--..|+... ...+.|-.+|+...+.+..+.+..
T Consensus 109 nG~i~vWdlnk--~-~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSG---------SQDg~vK~~DlR~~~S~~t~~~nS 176 (839)
T KOG0269|consen 109 NGVISVWDLNK--S-IRNKLLTVFNEHERSANKLDFHSTEPNILISG---------SQDGTVKCWDLRSKKSKSTFRSNS 176 (839)
T ss_pred CCcEEEEecCc--c-ccchhhhHhhhhccceeeeeeccCCccEEEec---------CCCceEEEEeeecccccccccccc
Confidence 45789999965 2 4456655444433 678889999888888754 233566666776767777666543
Q ss_pred ccccceeeeeEEecCCcEEEEeecCCCCCCCCCCCCCCCCceeeccccccccchhhhhccCCccchhhhhhheeeEEEEE
Q 004475 83 ICLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLG 162 (751)
Q Consensus 83 ~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 162 (751)
. .++.++|||--...++...+. +.|-++
T Consensus 177 E----SiRDV~fsp~~~~~F~s~~ds------------------------------------------------G~lqlW 204 (839)
T KOG0269|consen 177 E----SIRDVKFSPGYGNKFASIHDS------------------------------------------------GYLQLW 204 (839)
T ss_pred h----hhhceeeccCCCceEEEecCC------------------------------------------------ceEEEe
Confidence 2 478999998655555553321 344445
Q ss_pred cC---CCCceecCCC-ceEEeeeeCCCCceEEEEEecCCcccccccCCCceeEEEEeCCCceeeeeccCCCCCCCCCccC
Q 004475 163 SL---DGTAKDFGTP-AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYN 238 (751)
Q Consensus 163 ~~---~G~~~~lt~~-~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~ 238 (751)
|+ +.-..+++.+ +.+....|+|++.+||.-.. ...+.+|+..+.+...+.... ...
T Consensus 205 DlRqp~r~~~k~~AH~GpV~c~nwhPnr~~lATGGR-------------DK~vkiWd~t~~~~~~~~tIn--Tia----- 264 (839)
T KOG0269|consen 205 DLRQPDRCEKKLTAHNGPVLCLNWHPNREWLATGGR-------------DKMVKIWDMTDSRAKPKHTIN--TIA----- 264 (839)
T ss_pred eccCchhHHHHhhcccCceEEEeecCCCceeeecCC-------------CccEEEEeccCCCccceeEEe--ecc-----
Confidence 55 2345667777 77889999999999886542 345778888765443321110 011
Q ss_pred CccCCCceeeeecCCCceEEEEEeccCCCCccccCcccceeeccC
Q 004475 239 SVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPA 283 (751)
Q Consensus 239 ~~~~~~~~~~~spdG~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~ 283 (751)
-+..+.|-|+-++.|+.++.- ....|+++|+
T Consensus 265 ----pv~rVkWRP~~~~hLAtcsmv----------~dtsV~VWDv 295 (839)
T KOG0269|consen 265 ----PVGRVKWRPARSYHLATCSMV----------VDTSVHVWDV 295 (839)
T ss_pred ----eeeeeeeccCccchhhhhhcc----------ccceEEEEee
Confidence 134789999999866665422 2246777776
No 416
>KOG1551 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.17 E-value=0.062 Score=50.49 Aligned_cols=58 Identities=12% Similarity=0.029 Sum_probs=38.5
Q ss_pred EEEEEcCCCCCCCCChHHHHHHHHHHHhCCCcEEEEEeCCCCCcCCccccHHHHHHHHHHHHHHH
Q 004475 675 ILIIHGEVDDKVGLFPMQAERFFDALKGHGALSRLVLLPFEHHVYAARENVMHVIWETDRWLQKY 739 (751)
Q Consensus 675 ~li~~G~~D~~vp~~~~~~~~~~~~l~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~fl~~~ 739 (751)
+.++...+|.-+| ...+..+.+... .+++.+.. +||.-...-....+.++|.+-|+..
T Consensus 309 ~ivv~A~~D~Yip--r~gv~~lQ~~WP----g~eVr~~e-gGHVsayl~k~dlfRR~I~d~L~R~ 366 (371)
T KOG1551|consen 309 IIVVQAKEDAYIP--RTGVRSLQEIWP----GCEVRYLE-GGHVSAYLFKQDLFRRAIVDGLDRL 366 (371)
T ss_pred EEEEEecCCcccc--ccCcHHHHHhCC----CCEEEEee-cCceeeeehhchHHHHHHHHHHHhh
Confidence 6778889999988 655555555443 35666665 5797554455566777777777654
No 417
>KOG4388 consensus Hormone-sensitive lipase HSL [Lipid transport and metabolism]
Probab=96.14 E-value=0.0085 Score=62.31 Aligned_cols=67 Identities=15% Similarity=0.055 Sum_probs=50.6
Q ss_pred CCEEEEEcCCCCCCCCChHHHHHHHHHHHhCCCcEEEEEeCCCCCcCCccccH----HHHHHHHHHHHHHHhcCC
Q 004475 673 KPILIIHGEVDDKVGLFPMQAERFFDALKGHGALSRLVLLPFEHHVYAARENV----MHVIWETDRWLQKYCLSN 743 (751)
Q Consensus 673 ~P~li~~G~~D~~vp~~~~~~~~~~~~l~~~~~~~~~~~~~~~~H~~~~~~~~----~~~~~~~~~fl~~~l~~~ 743 (751)
+|+.|+.-..|+. .+.+..|..+|+..|.++.+.++.+..|+|.+.... .+..+.-++=|...|..+
T Consensus 788 Pp~~i~ac~mDP~----LDD~vmfA~kLr~lG~~v~l~vle~lPHGFLnft~ls~E~~~~~~~CI~rl~~~L~~~ 858 (880)
T KOG4388|consen 788 PPVHIVACAMDPM----LDDSVMFARKLRNLGQPVTLRVLEDLPHGFLNFTALSRETRQAAELCIERLRLVLTPP 858 (880)
T ss_pred CCceEEEeccCcc----hhHHHHHHHHHHhcCCceeehhhhcCCccceeHHhhCHHHHHHHHHHHHHHHHHhCCC
Confidence 6899999999998 577889999999999999999999999998764322 233334445555555543
No 418
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=96.14 E-value=0.89 Score=43.73 Aligned_cols=56 Identities=23% Similarity=0.363 Sum_probs=34.6
Q ss_pred ceeecCCCCeEEEEEeecccccccCCceeEEEEEcCCC--C---eeeccCCCCccccceeeeeEEecCCcEEEEee
Q 004475 35 FVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETG--E---AKPLFESPDICLNAVFGSFVWVNNSTLLIFTI 105 (751)
Q Consensus 35 ~p~~SPDG~~iaf~~~~~~~~~~~~~~~~l~i~~~~~g--~---~~~lt~~~~~~~~~~~~~~~wspDg~~l~~~~ 105 (751)
..+.+.||+.||.+.+ ..|-|...+.. . .-++-+.+ ++-.+.++||||+..||+..
T Consensus 2 ~~~~~~~Gk~lAi~qd-----------~~iEiRsa~Ddf~si~~kcqVpkD~----~PQWRkl~WSpD~tlLa~a~ 62 (282)
T PF15492_consen 2 HLALSSDGKLLAILQD-----------QCIEIRSAKDDFSSIIGKCQVPKDP----NPQWRKLAWSPDCTLLAYAE 62 (282)
T ss_pred ceeecCCCcEEEEEec-----------cEEEEEeccCCchheeEEEecCCCC----CchheEEEECCCCcEEEEEc
Confidence 3578999999999753 33444443321 1 11232222 22356789999999999983
No 419
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=96.13 E-value=0.2 Score=48.70 Aligned_cols=84 Identities=15% Similarity=0.152 Sum_probs=58.2
Q ss_pred eeEEeecCCCCCCCCcccccCCCCcccccceeecCCCCeEEEEEeecccccccCCceeEEEEEcCCCCeeeccCCCCccc
Q 004475 6 GIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICL 85 (751)
Q Consensus 6 ~~~~~~~~~~~~~g~~~~l~~~~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~~~~~l~i~~~~~g~~~~lt~~~~~~~ 85 (751)
=|+|.|+.. ++...-- ...|..+....+.|+...++-.. +....|.++++.+..-..+..+-+ ..
T Consensus 116 vIrVid~~~----~~~~~~~-~ghG~sINeik~~p~~~qlvls~---------SkD~svRlwnI~~~~Cv~VfGG~e-gH 180 (385)
T KOG1034|consen 116 VIRVIDVVS----GQCSKNY-RGHGGSINEIKFHPDRPQLVLSA---------SKDHSVRLWNIQTDVCVAVFGGVE-GH 180 (385)
T ss_pred EEEEEecch----hhhccce-eccCccchhhhcCCCCCcEEEEe---------cCCceEEEEeccCCeEEEEecccc-cc
Confidence 478888877 6655422 23455788999999998777654 445778888888877666654422 11
Q ss_pred cceeeeeEEecCCcEEEEe
Q 004475 86 NAVFGSFVWVNNSTLLIFT 104 (751)
Q Consensus 86 ~~~~~~~~wspDg~~l~~~ 104 (751)
...+-++.||+||.+|+-.
T Consensus 181 rdeVLSvD~~~~gd~i~Sc 199 (385)
T KOG1034|consen 181 RDEVLSVDFSLDGDRIASC 199 (385)
T ss_pred cCcEEEEEEcCCCCeeecc
Confidence 2246688999999988865
No 420
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=96.10 E-value=0.22 Score=48.30 Aligned_cols=92 Identities=12% Similarity=0.128 Sum_probs=62.1
Q ss_pred eEEEEEcCCC-Cc---eecCCC-ceEEeeeeCCCCceEEEEEecCCcccccccCCCceeEEEEeCCCcee-eeeccCCCC
Q 004475 157 AQLVLGSLDG-TA---KDFGTP-AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLV-RELCDLPPA 230 (751)
Q Consensus 157 ~~l~~~~~~G-~~---~~lt~~-~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~-~~l~~~~~~ 230 (751)
++|-++++.. +. .-+..+ ..+..++.+-+|..||..+... .-|.+||..+|.. .++-.
T Consensus 159 GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkG------------TLIRIFdt~~g~~l~E~RR---- 222 (346)
T KOG2111|consen 159 GQVQIVDLASTKPNAPSIINAHDSDIACVALNLQGTLVATASTKG------------TLIRIFDTEDGTLLQELRR---- 222 (346)
T ss_pred ceEEEEEhhhcCcCCceEEEcccCceeEEEEcCCccEEEEeccCc------------EEEEEEEcCCCcEeeeeec----
Confidence 5777888833 22 444444 7788999999999998876542 3467899876643 33211
Q ss_pred CCCCCccCCccCCCceeeeecCCCceEEEEEeccCCCCccccCcccceeeccCC
Q 004475 231 EDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAE 284 (751)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~spdG~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~ 284 (751)
......+..++||||+.+ ++.++ +.+.|+++.+.
T Consensus 223 -------G~d~A~iy~iaFSp~~s~-LavsS------------dKgTlHiF~l~ 256 (346)
T KOG2111|consen 223 -------GVDRADIYCIAFSPNSSW-LAVSS------------DKGTLHIFSLR 256 (346)
T ss_pred -------CCchheEEEEEeCCCccE-EEEEc------------CCCeEEEEEee
Confidence 122345679999999999 77765 45678887775
No 421
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=96.10 E-value=0.81 Score=44.49 Aligned_cols=84 Identities=13% Similarity=0.059 Sum_probs=56.8
Q ss_pred CCceeEEEEEcCCCCee---eccCCCCccccceeeeeEEecCCcEEEEeecCCCCCCCCCCCCCCCCceeeccccccccc
Q 004475 59 SCKLRVWIADAETGEAK---PLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIIS 135 (751)
Q Consensus 59 ~~~~~l~i~~~~~g~~~---~lt~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (751)
-..++|-|+++..-+.. -+-.+.. .+.-++.+-+|..||..+..
T Consensus 156 ~k~GqvQi~dL~~~~~~~p~~I~AH~s-----~Iacv~Ln~~Gt~vATaStk---------------------------- 202 (346)
T KOG2111|consen 156 FKTGQVQIVDLASTKPNAPSIINAHDS-----DIACVALNLQGTLVATASTK---------------------------- 202 (346)
T ss_pred CccceEEEEEhhhcCcCCceEEEcccC-----ceeEEEEcCCccEEEEeccC----------------------------
Confidence 34478888888765542 2211111 35677888999988877442
Q ss_pred hhhhhccCCccchhhhhhheeeEEEEEcC-CC----CceecCCCceEEeeeeCCCCceEEEEEec
Q 004475 136 RMTDNLLKDEYDESLFDYYTTAQLVLGSL-DG----TAKDFGTPAVYTAVEPSPDQKYVLITSMH 195 (751)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~G----~~~~lt~~~~~~~~~~SpDG~~i~~~~~~ 195 (751)
..-|.+.|. +| +.++=++...+..++||||+.+|+++++.
T Consensus 203 --------------------GTLIRIFdt~~g~~l~E~RRG~d~A~iy~iaFSp~~s~LavsSdK 247 (346)
T KOG2111|consen 203 --------------------GTLIRIFDTEDGTLLQELRRGVDRADIYCIAFSPNSSWLAVSSDK 247 (346)
T ss_pred --------------------cEEEEEEEcCCCcEeeeeecCCchheEEEEEeCCCccEEEEEcCC
Confidence 135666777 77 33444555888999999999999998764
No 422
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=96.04 E-value=0.3 Score=49.79 Aligned_cols=141 Identities=11% Similarity=0.028 Sum_probs=71.7
Q ss_pred eEEEEEcC-CCCcee-cCCC-ceEEeeeeCCCCceEEEEEecCCcccccccCCCceeEEEEeCCCceeeeeccCCCCCCC
Q 004475 157 AQLVLGSL-DGTAKD-FGTP-AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDI 233 (751)
Q Consensus 157 ~~l~~~~~-~G~~~~-lt~~-~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~ 233 (751)
.+||+|.+ +|..-. +..+ ..+.-+.||-||++|+..+.+. .+.+|.+..- +.......-.
T Consensus 103 g~lYlWelssG~LL~v~~aHYQ~ITcL~fs~dgs~iiTgskDg-------------~V~vW~l~~l----v~a~~~~~~~ 165 (476)
T KOG0646|consen 103 GNLYLWELSSGILLNVLSAHYQSITCLKFSDDGSHIITGSKDG-------------AVLVWLLTDL----VSADNDHSVK 165 (476)
T ss_pred CcEEEEEeccccHHHHHHhhccceeEEEEeCCCcEEEecCCCc-------------cEEEEEEEee----cccccCCCcc
Confidence 58999999 885432 2333 6778899999999987665443 3445543210 0000000000
Q ss_pred C-CccCCccCCCceeeeecCCCceEEEEEeccCCCCccccCcccceeeccCCCCCCCCceEeEeeceeEE-EEEecCCce
Q 004475 234 P-VCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFS-VSWCDDSLA 311 (751)
Q Consensus 234 ~-~~~~~~~~~~~~~~~spdG~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~-~~~spdg~~ 311 (751)
| .-|......+..+...+-|...-+++.+ ....+.++++. .+..-.-...+..+. ++.+|-.+.
T Consensus 166 p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS-----------~D~t~k~wdlS---~g~LLlti~fp~si~av~lDpae~~ 231 (476)
T KOG0646|consen 166 PLHIFSDHTLSITDLQIGSGGTNARLYTAS-----------EDRTIKLWDLS---LGVLLLTITFPSSIKAVALDPAERV 231 (476)
T ss_pred ceeeeccCcceeEEEEecCCCccceEEEec-----------CCceEEEEEec---cceeeEEEecCCcceeEEEcccccE
Confidence 1 0111122223344444443322333322 22356666664 232222223455566 788898888
Q ss_pred EEEeeeecccceeEEEecCCC
Q 004475 312 LVNETWYKTSQTRTWLVCPGS 332 (751)
Q Consensus 312 l~~~~~~~~~~~~l~~~~~~~ 332 (751)
++.++. ...||+.++..
T Consensus 232 ~yiGt~----~G~I~~~~~~~ 248 (476)
T KOG0646|consen 232 VYIGTE----EGKIFQNLLFK 248 (476)
T ss_pred EEecCC----cceEEeeehhc
Confidence 777552 34677766654
No 423
>COG3319 Thioesterase domains of type I polyketide synthases or non-ribosomal peptide synthetases [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=96.01 E-value=0.018 Score=55.80 Aligned_cols=75 Identities=13% Similarity=0.045 Sum_probs=45.1
Q ss_pred eEEEEcCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhC---CCceeEEEE
Q 004475 555 FAVLAGPSIPIIGEGDKLPNDRFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHA---PHLFCCGIA 631 (751)
Q Consensus 555 ~~v~~~~~~~~~g~g~~~~~~~~~~~~~~d~~~~v~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~---p~~~~~~v~ 631 (751)
..|+. ....|++.........+++.+...+.|..++ + ...+.+.|+|+||.+|.-+|.+- .+.+..+++
T Consensus 27 ~~v~~---l~a~g~~~~~~~~~~l~~~a~~yv~~Ir~~Q--P---~GPy~L~G~S~GG~vA~evA~qL~~~G~~Va~L~l 98 (257)
T COG3319 27 LPVYG---LQAPGYGAGEQPFASLDDMAAAYVAAIRRVQ--P---EGPYVLLGWSLGGAVAFEVAAQLEAQGEEVAFLGL 98 (257)
T ss_pred ceeec---cccCcccccccccCCHHHHHHHHHHHHHHhC--C---CCCEEEEeeccccHHHHHHHHHHHhCCCeEEEEEE
Confidence 55666 4455554333333445555554444444332 2 24799999999999999998653 245666666
Q ss_pred ccCCCC
Q 004475 632 RSGSYN 637 (751)
Q Consensus 632 ~~~~~d 637 (751)
+.....
T Consensus 99 lD~~~~ 104 (257)
T COG3319 99 LDAVPP 104 (257)
T ss_pred eccCCC
Confidence 665433
No 424
>PF05057 DUF676: Putative serine esterase (DUF676); InterPro: IPR007751 This domain, whose function is unknown, is found within a group of putative lipases.
Probab=95.88 E-value=0.0065 Score=58.18 Aligned_cols=21 Identities=29% Similarity=0.447 Sum_probs=18.0
Q ss_pred CCcEEEEEeChHHHHHHHHHH
Q 004475 600 PSRIAVGGHSYGAFMTAHLLA 620 (751)
Q Consensus 600 ~~~i~l~G~S~GG~~a~~~a~ 620 (751)
..+|.++|||+||.++-.++.
T Consensus 77 ~~~IsfIgHSLGGli~r~al~ 97 (217)
T PF05057_consen 77 IRKISFIGHSLGGLIARYALG 97 (217)
T ss_pred cccceEEEecccHHHHHHHHH
Confidence 358999999999999977765
No 425
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=95.86 E-value=0.39 Score=51.10 Aligned_cols=168 Identities=10% Similarity=0.106 Sum_probs=91.7
Q ss_pred EEEEEcC--CC--CceecCCC-ceEEeeee-CCCCceEEEEEecCCcccccccCCCceeEEEEeCCCceeeeeccCC-CC
Q 004475 158 QLVLGSL--DG--TAKDFGTP-AVYTAVEP-SPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLP-PA 230 (751)
Q Consensus 158 ~l~~~~~--~G--~~~~lt~~-~~~~~~~~-SpDG~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~-~~ 230 (751)
.+.+++. .+ -...|..+ ..+..++. .++... +.+ +.+...|++||++++..+.+.... ..
T Consensus 96 TVK~W~~~~~~~~c~stir~H~DYVkcla~~ak~~~l-vaS------------gGLD~~IflWDin~~~~~l~~s~n~~t 162 (735)
T KOG0308|consen 96 TVKVWNAHKDNTFCMSTIRTHKDYVKCLAYIAKNNEL-VAS------------GGLDRKIFLWDINTGTATLVASFNNVT 162 (735)
T ss_pred eEEEeecccCcchhHhhhhcccchheeeeecccCcee-EEe------------cCCCccEEEEEccCcchhhhhhccccc
Confidence 4455554 32 44556556 66667777 444443 332 223557999999977443221111 11
Q ss_pred CCCCCccC-CccCCCceeeeecCCCceEEEEEeccCCCCccccCcccceeeccCCCCCCCCceEeEeeceeEE-EEEecC
Q 004475 231 EDIPVCYN-SVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFS-VSWCDD 308 (751)
Q Consensus 231 ~~~~~~~~-~~~~~~~~~~~spdG~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~-~~~spd 308 (751)
.. .+. .....+++++-.+.|. ++... .-.+.|.++|. .+......|..+...+. +..++|
T Consensus 163 ~~---sl~sG~k~siYSLA~N~t~t--~ivsG-----------gtek~lr~wDp--rt~~kimkLrGHTdNVr~ll~~dD 224 (735)
T KOG0308|consen 163 VN---SLGSGPKDSIYSLAMNQTGT--IIVSG-----------GTEKDLRLWDP--RTCKKIMKLRGHTDNVRVLLVNDD 224 (735)
T ss_pred cc---cCCCCCccceeeeecCCcce--EEEec-----------CcccceEEecc--ccccceeeeeccccceEEEEEcCC
Confidence 11 011 2234566777777773 33321 12357888885 33455566666666777 888999
Q ss_pred CceEEEeeeecccceeEEEecCCCCCCcceeeee--cccccccCCCCCCCeeeCCCCCEEEEee
Q 004475 309 SLALVNETWYKTSQTRTWLVCPGSKDVAPRVLFD--RVFENVYSDPGSPMMTRTSTGTNVIAKI 370 (751)
Q Consensus 309 g~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~~~~~spDG~~l~~~~ 370 (751)
|.+++-++. .+..+||-+..+. .++. .....+|. +..+|+=+.+++..
T Consensus 225 Gt~~ls~sS--DgtIrlWdLgqQr------Cl~T~~vH~e~VWa------L~~~~sf~~vYsG~ 274 (735)
T KOG0308|consen 225 GTRLLSASS--DGTIRLWDLGQQR------CLATYIVHKEGVWA------LQSSPSFTHVYSGG 274 (735)
T ss_pred CCeEeecCC--CceEEeeeccccc------eeeeEEeccCceEE------EeeCCCcceEEecC
Confidence 999887662 3334666554333 2221 22223554 55567767777665
No 426
>KOG3975 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.80 E-value=0.59 Score=43.98 Aligned_cols=53 Identities=17% Similarity=0.172 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCC--ceeEEEEccCC
Q 004475 582 VSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPH--LFCCGIARSGS 635 (751)
Q Consensus 582 ~~d~~~~v~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~p~--~~~~~v~~~~~ 635 (751)
.+++..-++++++.-.-| .||.++|||-|++|.+.+...... .+..++++-|.
T Consensus 92 ~~QV~HKlaFik~~~Pk~-~ki~iiGHSiGaYm~Lqil~~~k~~~~vqKa~~LFPT 146 (301)
T KOG3975|consen 92 QDQVDHKLAFIKEYVPKD-RKIYIIGHSIGAYMVLQILPSIKLVFSVQKAVLLFPT 146 (301)
T ss_pred hhHHHHHHHHHHHhCCCC-CEEEEEecchhHHHHHHHhhhcccccceEEEEEecch
Confidence 455667788887763333 689999999999999999874322 35566665553
No 427
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=95.74 E-value=0.68 Score=44.39 Aligned_cols=90 Identities=19% Similarity=0.235 Sum_probs=54.9
Q ss_pred eEEEEEcC-CCCc-eecCCC-ceEEeeeeCCCCceEEEEEecCCcccccccCCCceeEEEEeCC--CceeeeeccCCCCC
Q 004475 157 AQLVLGSL-DGTA-KDFGTP-AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTD--GKLVRELCDLPPAE 231 (751)
Q Consensus 157 ~~l~~~~~-~G~~-~~lt~~-~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~--~~~~~~l~~~~~~~ 231 (751)
.++-+.|+ +|.- ..|..+ ..+..+.|||...+|+++... ...+.+||+. .+-.+.|-.+....
T Consensus 168 ~~VrLCDi~SGs~sH~LsGHr~~vlaV~Wsp~~e~vLatgsa------------Dg~irlWDiRrasgcf~~lD~hn~k~ 235 (397)
T KOG4283|consen 168 VQVRLCDIASGSFSHTLSGHRDGVLAVEWSPSSEWVLATGSA------------DGAIRLWDIRRASGCFRVLDQHNTKR 235 (397)
T ss_pred CcEEEEeccCCcceeeeccccCceEEEEeccCceeEEEecCC------------CceEEEEEeecccceeEEeecccCcc
Confidence 57888899 8844 344444 889999999999999987543 3346667764 33344443332210
Q ss_pred CC-CCccCCccCCCceeeeecCCCceEEE
Q 004475 232 DI-PVCYNSVREGMRSISWRADKPSTLYW 259 (751)
Q Consensus 232 ~~-~~~~~~~~~~~~~~~~spdG~~~i~~ 259 (751)
-. ...-++...-+.+++|+.||++ ++.
T Consensus 236 ~p~~~~n~ah~gkvngla~tSd~~~-l~~ 263 (397)
T KOG4283|consen 236 PPILKTNTAHYGKVNGLAWTSDARY-LAS 263 (397)
T ss_pred Cccccccccccceeeeeeecccchh-hhh
Confidence 00 0111223334568999999998 444
No 428
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=95.73 E-value=1.9 Score=41.43 Aligned_cols=146 Identities=10% Similarity=0.145 Sum_probs=75.8
Q ss_pred ceEEeeeeCC-CCceEEEEEecCCcccccccCCCceeEEEEeCCCce----eeeeccCCCCCCCCCccCCccCCCceeee
Q 004475 175 AVYTAVEPSP-DQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKL----VRELCDLPPAEDIPVCYNSVREGMRSISW 249 (751)
Q Consensus 175 ~~~~~~~~Sp-DG~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~----~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (751)
..+.++.|.. |-++|..++-+- .--+||++++. ..+| .+....+..++|
T Consensus 151 aPlTSFDWne~dp~~igtSSiDT-------------TCTiWdie~~~~~~vkTQL-------------IAHDKEV~DIaf 204 (364)
T KOG0290|consen 151 APLTSFDWNEVDPNLIGTSSIDT-------------TCTIWDIETGVSGTVKTQL-------------IAHDKEVYDIAF 204 (364)
T ss_pred CcccccccccCCcceeEeecccC-------------eEEEEEEeeccccceeeEE-------------EecCcceeEEEe
Confidence 4566888887 556665554332 23367777652 2233 334455778999
Q ss_pred ecCCCceEEEEEeccCCCCccccCcccceeeccCCCCCCCCceEeEeece---eEE-EEEecC-CceEEEeeeeccccee
Q 004475 250 RADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDL---RFS-VSWCDD-SLALVNETWYKTSQTR 324 (751)
Q Consensus 250 spdG~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~---~~~-~~~spd-g~~l~~~~~~~~~~~~ 324 (751)
+.+|.. +|++ +...+.+.++|+-.. ...+.+.+.+. .+- ++|.+. -++++... -...+
T Consensus 205 ~~~s~~--~FAS----------vgaDGSvRmFDLR~l--eHSTIIYE~p~~~~pLlRLswnkqDpnymATf~---~dS~~ 267 (364)
T KOG0290|consen 205 LKGSRD--VFAS----------VGADGSVRMFDLRSL--EHSTIIYEDPSPSTPLLRLSWNKQDPNYMATFA---MDSNK 267 (364)
T ss_pred ccCccc--eEEE----------ecCCCcEEEEEeccc--ccceEEecCCCCCCcceeeccCcCCchHHhhhh---cCCce
Confidence 998776 3433 224456666666321 12333433322 222 566543 33333222 22356
Q ss_pred EEEecCCCCCCcceeeeecccccccCCCCCCCeeeCCCCCEEEEee
Q 004475 325 TWLVCPGSKDVAPRVLFDRVFENVYSDPGSPMMTRTSTGTNVIAKI 370 (751)
Q Consensus 325 l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~spDG~~l~~~~ 370 (751)
+.++|+.-. ..+..-.......+.. ++|.|..+..+..+
T Consensus 268 V~iLDiR~P-~tpva~L~~H~a~VNg------IaWaPhS~~hicta 306 (364)
T KOG0290|consen 268 VVILDIRVP-CTPVARLRNHQASVNG------IAWAPHSSSHICTA 306 (364)
T ss_pred EEEEEecCC-CcceehhhcCcccccc------eEecCCCCceeeec
Confidence 777777654 2222222223333333 89999977666655
No 429
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=95.70 E-value=0.66 Score=48.71 Aligned_cols=88 Identities=14% Similarity=0.074 Sum_probs=45.9
Q ss_pred CceeeeecCCCceEEEEEeccCCCCccccCcccceeeccCCCCCCCCceEeEe--eceeEE-EEEecCCceEEEeeeecc
Q 004475 244 MRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHK--LDLRFS-VSWCDDSLALVNETWYKT 320 (751)
Q Consensus 244 ~~~~~~spdG~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~--~~~~~~-~~~spdg~~l~~~~~~~~ 320 (751)
+..+..++--. |+.+...++.....+...+..+-.+++. . ....... ....++ +.|+.||-.++.++
T Consensus 178 lN~v~in~~hg--Lla~Gt~~g~VEfwDpR~ksrv~~l~~~---~-~v~s~pg~~~~~svTal~F~d~gL~~aVGt---- 247 (703)
T KOG2321|consen 178 LNVVSINEEHG--LLACGTEDGVVEFWDPRDKSRVGTLDAA---S-SVNSHPGGDAAPSVTALKFRDDGLHVAVGT---- 247 (703)
T ss_pred ceeeeecCccc--eEEecccCceEEEecchhhhhheeeecc---c-ccCCCccccccCcceEEEecCCceeEEeec----
Confidence 34555555543 3333334444444444444555555553 1 1111111 122345 88999998888866
Q ss_pred cceeEEEecCCCCCCcceeeeec
Q 004475 321 SQTRTWLVCPGSKDVAPRVLFDR 343 (751)
Q Consensus 321 ~~~~l~~~~~~~~~~~~~~l~~~ 343 (751)
....++++|+.+ ..+..+-++
T Consensus 248 s~G~v~iyDLRa--~~pl~~kdh 268 (703)
T KOG2321|consen 248 STGSVLIYDLRA--SKPLLVKDH 268 (703)
T ss_pred cCCcEEEEEccc--CCceeeccc
Confidence 235789999987 344444433
No 430
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=95.65 E-value=0.24 Score=49.06 Aligned_cols=131 Identities=11% Similarity=0.163 Sum_probs=73.5
Q ss_pred eeEEEEeCCCceeeeeccCCCCCCCCCccCCccCCCceeeeecCCCceEEEEEeccCCCCccccCcccceeeccCCCCCC
Q 004475 209 QKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEG 288 (751)
Q Consensus 209 ~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~spdG~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 288 (751)
..|++|...++.-. +-. ..|......+-.+.|||..+..++-++ -.+.|.++|+-.. .
T Consensus 234 ~~I~lw~~~~g~W~-vd~--------~Pf~gH~~SVEDLqWSptE~~vfaScS------------~DgsIrIWDiRs~-~ 291 (440)
T KOG0302|consen 234 KGIHLWEPSTGSWK-VDQ--------RPFTGHTKSVEDLQWSPTEDGVFASCS------------CDGSIRIWDIRSG-P 291 (440)
T ss_pred cceEeeeeccCcee-ecC--------ccccccccchhhhccCCccCceEEeee------------cCceEEEEEecCC-C
Confidence 46788877665322 111 223334445568999999998333333 2346777776321 1
Q ss_pred CCceEe-EeeceeEE-EEEecCCceEEEeeeecccceeEEEecCCCCCCcceeeeecccccccCCCCCCCeeeCCCCCEE
Q 004475 289 EKPEIL-HKLDLRFS-VSWCDDSLALVNETWYKTSQTRTWLVCPGSKDVAPRVLFDRVFENVYSDPGSPMMTRTSTGTNV 366 (751)
Q Consensus 289 ~~~~~l-~~~~~~~~-~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~spDG~~l 366 (751)
...... ...+..+. ++|+-+-..|++.. +.+...||-+..-.. +.++..+........+ +.|+|....+
T Consensus 292 ~~~~~~~kAh~sDVNVISWnr~~~lLasG~--DdGt~~iwDLR~~~~-~~pVA~fk~Hk~pIts------ieW~p~e~s~ 362 (440)
T KOG0302|consen 292 KKAAVSTKAHNSDVNVISWNRREPLLASGG--DDGTLSIWDLRQFKS-GQPVATFKYHKAPITS------IEWHPHEDSV 362 (440)
T ss_pred ccceeEeeccCCceeeEEccCCcceeeecC--CCceEEEEEhhhccC-CCcceeEEeccCCeeE------EEeccccCce
Confidence 223333 34566777 99987777676655 334456666554443 3344444433333333 7899887766
Q ss_pred EEee
Q 004475 367 IAKI 370 (751)
Q Consensus 367 ~~~~ 370 (751)
+..+
T Consensus 363 iaas 366 (440)
T KOG0302|consen 363 IAAS 366 (440)
T ss_pred EEec
Confidence 5555
No 431
>COG4782 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.55 E-value=0.056 Score=53.84 Aligned_cols=57 Identities=18% Similarity=0.149 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHh----C----CCceeEEEEccCCCC
Q 004475 579 EQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAH----A----PHLFCCGIARSGSYN 637 (751)
Q Consensus 579 ~~~~~d~~~~v~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~----~----p~~~~~~v~~~~~~d 637 (751)
.....+++.++++|.+... ..+|.|++||||.++++.++-+ . +.+++-+|+.+|=.|
T Consensus 171 ~~Sr~aLe~~lr~La~~~~--~~~I~ilAHSMGtwl~~e~LrQLai~~~~~l~~ki~nViLAaPDiD 235 (377)
T COG4782 171 NYSRPALERLLRYLATDKP--VKRIYLLAHSMGTWLLMEALRQLAIRADRPLPAKIKNVILAAPDID 235 (377)
T ss_pred hhhHHHHHHHHHHHHhCCC--CceEEEEEecchHHHHHHHHHHHhccCCcchhhhhhheEeeCCCCC
Confidence 3446777888999988754 3689999999999999887643 2 235777888888655
No 432
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=95.54 E-value=1.9 Score=39.57 Aligned_cols=56 Identities=7% Similarity=-0.100 Sum_probs=34.6
Q ss_pred EEEecCCceEEEeeeecccceeEEEecCCCCCCcceeeeecccccccCCCCCCCeeeCCCCCEEEEee
Q 004475 303 VSWCDDSLALVNETWYKTSQTRTWLVCPGSKDVAPRVLFDRVFENVYSDPGSPMMTRTSTGTNVIAKI 370 (751)
Q Consensus 303 ~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~spDG~~l~~~~ 370 (751)
++..|.|+.|+..... +..-++|..++ ...+-+.....++.. +.|||...+++..+
T Consensus 237 v~vdpsgrll~sg~~d----ssc~lydirg~--r~iq~f~phsadir~------vrfsp~a~yllt~s 292 (350)
T KOG0641|consen 237 VAVDPSGRLLASGHAD----SSCMLYDIRGG--RMIQRFHPHSADIRC------VRFSPGAHYLLTCS 292 (350)
T ss_pred EEECCCcceeeeccCC----CceEEEEeeCC--ceeeeeCCCccceeE------EEeCCCceEEEEec
Confidence 7788999988765532 23444566664 334433333333333 77999998888777
No 433
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.49 E-value=1.4 Score=42.42 Aligned_cols=159 Identities=14% Similarity=0.156 Sum_probs=85.7
Q ss_pred EEEecCCce-EEEeeeecccceeEEEecCCCCCCcceeeeecccccccCCCCCCCeeeCCCCCEEEEeeeecCCcceEEE
Q 004475 303 VSWCDDSLA-LVNETWYKTSQTRTWLVCPGSKDVAPRVLFDRVFENVYSDPGSPMMTRTSTGTNVIAKIKKENDEQIYIL 381 (751)
Q Consensus 303 ~~~spdg~~-l~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~spDG~~l~~~~~~~~~~~~~~~ 381 (751)
..++|-... ++|... ++ .--++.|.++. .+++.+........+ +. -.|||||.+|+...++-
T Consensus 73 i~~~p~~~ravafARr--PG-tf~~vfD~~~~-~~pv~~~s~~~RHfy---GH--Gvfs~dG~~LYATEndf-------- 135 (366)
T COG3490 73 IAFHPALPRAVAFARR--PG-TFAMVFDPNGA-QEPVTLVSQEGRHFY---GH--GVFSPDGRLLYATENDF-------- 135 (366)
T ss_pred eecCCCCcceEEEEec--CC-ceEEEECCCCC-cCcEEEecccCceee---cc--cccCCCCcEEEeecCCC--------
Confidence 678888665 555552 22 34667788775 455555443332222 33 34899999998877442
Q ss_pred EccCCCCCCCCCceeEEEecCCCceeEEeeccchhhhhceeeeecCCcceeeccCCCEEEEEEecC--------------
Q 004475 382 LNGRGFTPEGNIPFLDLFDINTGSKERIWESNREKYFETAVALVFGQGEEDINLNQLKILTSKESK-------------- 447 (751)
Q Consensus 382 ~~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~-------------- 447 (751)
+..+..|-+||...+ .+++-. ....--+++...+.+||++|+......
T Consensus 136 --------d~~rGViGvYd~r~~-fqrvgE---------~~t~GiGpHev~lm~DGrtlvvanGGIethpdfgR~~lNld 197 (366)
T COG3490 136 --------DPNRGVIGVYDAREG-FQRVGE---------FSTHGIGPHEVTLMADGRTLVVANGGIETHPDFGRTELNLD 197 (366)
T ss_pred --------CCCCceEEEEecccc-cceecc---------cccCCcCcceeEEecCCcEEEEeCCceecccccCccccchh
Confidence 234456777777532 223311 111112345678999999988865421
Q ss_pred CCCCeEEEEEcCCCceeEeecCCCCCCCccCCceEEEEEEcCCCceEEEEEEc
Q 004475 448 TEITQYHILSWPLKKSSQITNFPHPYPTLASLQKEMIKYQRKDGVPLTATLYL 500 (751)
Q Consensus 448 ~~~~~l~~~~~~~g~~~~lt~~~~~~~~~~~~~~e~i~~~~~~~~~i~~~~~~ 500 (751)
..-+.+.++|..+|....-..++ +.+.....+++.+- .+|....+--|.
T Consensus 198 sMePSlvlld~atG~liekh~Lp---~~l~~lSiRHld~g-~dgtvwfgcQy~ 246 (366)
T COG3490 198 SMEPSLVLLDAATGNLIEKHTLP---ASLRQLSIRHLDIG-RDGTVWFGCQYR 246 (366)
T ss_pred hcCccEEEEeccccchhhhccCc---hhhhhcceeeeeeC-CCCcEEEEEEee
Confidence 12345666776665432211111 13444566777665 455545554443
No 434
>KOG4389 consensus Acetylcholinesterase/Butyrylcholinesterase [Signal transduction mechanisms]
Probab=95.45 E-value=0.024 Score=58.19 Aligned_cols=125 Identities=23% Similarity=0.260 Sum_probs=72.9
Q ss_pred EEEEEEcCCCCCCCCCCCccEEEEEcCCCCcCcccCCcccCCCCccCCCCchHHHHHHhCCeEEE-EcCCC-CCCCC---
Q 004475 494 LTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVL-AGPSI-PIIGE--- 568 (751)
Q Consensus 494 i~~~~~~P~~~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~v~-~~~~~-~~~g~--- 568 (751)
+..-+|.|. .++.+ .-++|+++||||.++...-.+ +. ...|+..+-+++ ..+|+ +-.|.
T Consensus 121 LYlNVW~P~-~~p~n---~tVlVWiyGGGF~sGt~SLdv------Yd------Gk~la~~envIvVs~NYRvG~FGFL~l 184 (601)
T KOG4389|consen 121 LYLNVWAPA-ADPYN---LTVLVWIYGGGFYSGTPSLDV------YD------GKFLAAVENVIVVSMNYRVGAFGFLYL 184 (601)
T ss_pred eEEEEeccC-CCCCC---ceEEEEEEcCccccCCcceee------ec------cceeeeeccEEEEEeeeeeccceEEec
Confidence 566677784 33333 348999999998765442211 11 234455554444 35553 11121
Q ss_pred -CCCCCCchhHHHHHHHHHHHHHHHHHcC---CCCCCcEEEEEeChHHHHHHHHHHhC--CCceeEEEEccCCCC
Q 004475 569 -GDKLPNDRFVEQLVSSAEAAVEEVVRRG---VADPSRIAVGGHSYGAFMTAHLLAHA--PHLFCCGIARSGSYN 637 (751)
Q Consensus 569 -g~~~~~~~~~~~~~~d~~~~v~~l~~~~---~id~~~i~l~G~S~GG~~a~~~a~~~--p~~~~~~v~~~~~~d 637 (751)
+..+.+ ..-.+-|.+-|++|+++.- .=|+++|.|+|.|+|+.....-+..- ...|+.+|+.+|..+
T Consensus 185 ~~~~eaP---GNmGl~DQqLAl~WV~~Ni~aFGGnp~~vTLFGESAGaASv~aHLlsP~S~glF~raIlQSGS~~ 256 (601)
T KOG4389|consen 185 PGHPEAP---GNMGLLDQQLALQWVQENIAAFGGNPSRVTLFGESAGAASVVAHLLSPGSRGLFHRAILQSGSLN 256 (601)
T ss_pred CCCCCCC---CccchHHHHHHHHHHHHhHHHhCCCcceEEEeccccchhhhhheecCCCchhhHHHHHhhcCCCC
Confidence 111111 1223566778999998851 13799999999999998664433322 236888888888655
No 435
>PRK13613 lipoprotein LpqB; Provisional
Probab=95.43 E-value=1.1 Score=49.77 Aligned_cols=164 Identities=15% Similarity=0.113 Sum_probs=89.7
Q ss_pred cccceeecCCCCeEEEEEeecccccccCCceeEEEEEcCCCCe-----eeccCCCCccccceeeeeEEecCCcEEEEeec
Q 004475 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEA-----KPLFESPDICLNAVFGSFVWVNNSTLLIFTIP 106 (751)
Q Consensus 32 ~~~~p~~SPDG~~iaf~~~~~~~~~~~~~~~~l~i~~~~~g~~-----~~lt~~~~~~~~~~~~~~~wspDg~~l~~~~~ 106 (751)
...+++.|+||+.+|++. .....||+-++.++.. +.+.... .+..|.|.++| +|...
T Consensus 364 ~~~s~avS~~g~~~A~v~---------~~~~~l~vg~~~~~~~~~~~~~~~~~~~------~Lt~PS~d~~g-~vWtv-- 425 (599)
T PRK13613 364 PLRRVAVSRDESRAAGIS---------ADGDSVYVGSLTPGASIGVHSWGVTADG------RLTSPSWDGRG-DLWVV-- 425 (599)
T ss_pred CccceEEcCCCceEEEEc---------CCCcEEEEeccCCCCccccccceeeccC------cccCCcCcCCC-CEEEe--
Confidence 567899999999999984 2345788866544332 2333322 25678999988 56544
Q ss_pred CCCCCCCCCCCCCCCCceeeccccccccchhhhhccCCccchhhhhhheeeEEEEEcCCCCceecCCC----ceEEeeee
Q 004475 107 SSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSLDGTAKDFGTP----AVYTAVEP 182 (751)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~G~~~~lt~~----~~~~~~~~ 182 (751)
+.... ...-|+++.-+|+...+... ..+..+..
T Consensus 426 d~~~~-------------------------------------------~~~vl~v~~~~G~~~~V~~~~l~g~~I~~lrv 462 (599)
T PRK13613 426 DRDPA-------------------------------------------DPRLLWLLQGDGEPVEVRTPELDGHRVVAVRV 462 (599)
T ss_pred cCCCC-------------------------------------------CceEEEEEcCCCcEEEeeccccCCCEeEEEEE
Confidence 11000 00123444335543333222 36889999
Q ss_pred CCCCceEEEEEecCCcccccccCCCceeEEE--EeC-CCceeeeeccCCCCCCCCCccCCccCCCceeeeecCCCceEEE
Q 004475 183 SPDQKYVLITSMHRPYSYKVPCARFSQKVQV--WTT-DGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYW 259 (751)
Q Consensus 183 SpDG~~i~~~~~~~~~~~~~~~~~~~~~l~~--~d~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~spdG~~~i~~ 259 (751)
|+||-++++...... ..+|++ +.. ..+. ..|+.. ..+......+..++|..++.- ++.
T Consensus 463 SrDG~RvAvv~~~~g----------~~~v~va~V~R~~~G~-~~l~~~-------~~l~~~l~~v~~~~W~~~~sL-~Vl 523 (599)
T PRK13613 463 ARDGVRVALIVEKDG----------RRSLQIGRIVRDAKAV-VSVEEF-------RSLAPELEDVTDMSWAGDSQL-VVL 523 (599)
T ss_pred CCCccEEEEEEecCC----------CcEEEEEEEEeCCCCc-EEeecc-------EEeccCCCccceeEEcCCCEE-EEE
Confidence 999999999865321 123333 222 2332 333221 111111123568899999984 443
Q ss_pred EEeccCCCCccccCcccceeeccCC
Q 004475 260 VEAQDRGDANVEVSPRDIIYTQPAE 284 (751)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~l~~~~~~ 284 (751)
.. ..+ ....++++.++
T Consensus 524 g~-~~~--------~~~~v~~v~vd 539 (599)
T PRK13613 524 GR-EEG--------GVQQARYVQVD 539 (599)
T ss_pred ec-cCC--------CCcceEEEecC
Confidence 32 111 12367888885
No 436
>KOG2100 consensus Dipeptidyl aminopeptidase [Posttranslational modification, protein turnover, chaperones]
Probab=95.43 E-value=5.4 Score=45.98 Aligned_cols=64 Identities=20% Similarity=0.193 Sum_probs=40.4
Q ss_pred eecCCCCeEEEEEeecccccccCCceeEEEEEcCCCC-eeeccCCCCccccceeeeeEEecCCcEEEEeec
Q 004475 37 SWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGE-AKPLFESPDICLNAVFGSFVWVNNSTLLIFTIP 106 (751)
Q Consensus 37 ~~SPDG~~iaf~~~~~~~~~~~~~~~~l~i~~~~~g~-~~~lt~~~~~~~~~~~~~~~wspDg~~l~~~~~ 106 (751)
..|||.+++++..+..+..+ -......++.++.+++ ......... .+..+.|||.|+.|+|...
T Consensus 103 ~~s~d~~~~~~~~~~~~~~r-hs~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~wsp~~~~l~yv~~ 167 (755)
T KOG2100|consen 103 LISPDRKYILLGRNYKKRFR-HSYTAKYHLYDLNTGEKLHPPEYEGS-----KIQYASWSPLGNDLAYVLH 167 (755)
T ss_pred ccChhhhhheeccCcccccc-eeeEEEEEEEEcCCCCcccCcccCCC-----eeEEEEEcCCCCEEEEEEe
Confidence 78899999999765322111 1444566677777776 111111111 2567899999999999854
No 437
>cd00741 Lipase Lipase. Lipases are esterases that can hydrolyze long-chain acyl-triglycerides into di- and monoglycerides, glycerol, and free fatty acids at a water/lipid interface. A typical feature of lipases is "interfacial activation", the process of becoming active at the lipid/water interface, although several examples of lipases have been identified that do not undergo interfacial activation . The active site of a lipase contains a catalytic triad consisting of Ser - His - Asp/Glu, but unlike most serine proteases, the active site is buried inside the structure. A "lid" or "flap" covers the active site, making it inaccessible to solvent and substrates. The lid opens during the process of interfacial activation, allowing the lipid substrate access to the active site.
Probab=95.42 E-value=0.049 Score=48.99 Aligned_cols=54 Identities=13% Similarity=0.065 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCC----ceeEEEEccCC
Q 004475 580 QLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPH----LFCCGIARSGS 635 (751)
Q Consensus 580 ~~~~d~~~~v~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~p~----~~~~~v~~~~~ 635 (751)
.+...+...++....+ ....+|.++|||+||.+|..++..... ....++.+++.
T Consensus 9 ~~~~~i~~~~~~~~~~--~p~~~i~v~GHSlGg~lA~l~a~~~~~~~~~~~~~~~~fg~p 66 (153)
T cd00741 9 SLANLVLPLLKSALAQ--YPDYKIHVTGHSLGGALAGLAGLDLRGRGLGRLVRVYTFGPP 66 (153)
T ss_pred HHHHHHHHHHHHHHHH--CCCCeEEEEEcCHHHHHHHHHHHHHHhccCCCceEEEEeCCC
Confidence 3445555555555443 235789999999999999999877643 34556666654
No 438
>KOG2182 consensus Hydrolytic enzymes of the alpha/beta hydrolase fold [Posttranslational modification, protein turnover, chaperones; General function prediction only]
Probab=95.32 E-value=0.097 Score=54.35 Aligned_cols=133 Identities=17% Similarity=0.155 Sum_probs=83.5
Q ss_pred EEcCCCceEEEEEEcCCCCCCCCCCCccEEEEEcCCCCcCcccCCcccCCCCccCCCCchHHHHHH-hCCeEEEEcCCCC
Q 004475 486 YQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFL-ARRFAVLAGPSIP 564 (751)
Q Consensus 486 ~~~~~~~~i~~~~~~P~~~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~G~~v~~~~~~~ 564 (751)
|...++...+=++|.+..+... .-|+.|++-|-|... ..+..........+| +.|-.|+...
T Consensus 63 F~~~~~~~~Qq~~y~n~~~~~~---~gPiFLmIGGEgp~~-----------~~wv~~~~~~~~~~AkkfgA~v~~lE--- 125 (514)
T KOG2182|consen 63 FDSSNGKFFQQRFYNNNQWAKP---GGPIFLMIGGEGPES-----------DKWVGNENLTWLQWAKKFGATVFQLE--- 125 (514)
T ss_pred hhcchhhhhhhheeeccccccC---CCceEEEEcCCCCCC-----------CCccccCcchHHHHHHHhCCeeEEee---
Confidence 3334444555566666554321 248899997754211 112121122233444 5688888733
Q ss_pred CCCCCCCCC-------Cch--hHHHHHHHHHHHHHHHHHcC-CCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEccC
Q 004475 565 IIGEGDKLP-------NDR--FVEQLVSSAEAAVEEVVRRG-VADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSG 634 (751)
Q Consensus 565 ~~g~g~~~~-------~~~--~~~~~~~d~~~~v~~l~~~~-~id~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~ 634 (751)
.+=+|.+.+ ... ...+.+.|+...|+.+..+- .-+..+++.+|.|+-|.|++++=.++|+.+.+.|+.++
T Consensus 126 HRFYG~S~P~~~~st~nlk~LSs~QALaDla~fI~~~n~k~n~~~~~~WitFGgSYsGsLsAW~R~~yPel~~GsvASSa 205 (514)
T KOG2182|consen 126 HRFYGQSSPIGDLSTSNLKYLSSLQALADLAEFIKAMNAKFNFSDDSKWITFGGSYSGSLSAWFREKYPELTVGSVASSA 205 (514)
T ss_pred eeccccCCCCCCCcccchhhhhHHHHHHHHHHHHHHHHhhcCCCCCCCeEEECCCchhHHHHHHHHhCchhheeeccccc
Confidence 333332211 111 23467889999998887763 44556999999999999999999999999999998887
Q ss_pred C
Q 004475 635 S 635 (751)
Q Consensus 635 ~ 635 (751)
+
T Consensus 206 p 206 (514)
T KOG2182|consen 206 P 206 (514)
T ss_pred c
Confidence 6
No 439
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=95.29 E-value=3.5 Score=40.95 Aligned_cols=158 Identities=13% Similarity=0.062 Sum_probs=96.8
Q ss_pred CcceeEEeecCCCCCCCCccc-ccCCCCcccccceeecCCCCeEEEEEeecccccccCCceeEEEEEcCCCCeeeccCCC
Q 004475 3 FFTGIGIHRLLPDDSLGPEKE-VHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESP 81 (751)
Q Consensus 3 ~~~~~~~~~~~~~~~~g~~~~-l~~~~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~~~~~l~i~~~~~g~~~~lt~~~ 81 (751)
...-|.+|||++ |+.+. |++ ....+...++|+--.++..+ ....+|--+|++..+..+-..+.
T Consensus 171 ~DrtikIwDlat----g~LkltltG--hi~~vr~vavS~rHpYlFs~----------gedk~VKCwDLe~nkvIR~YhGH 234 (460)
T KOG0285|consen 171 ADRTIKIWDLAT----GQLKLTLTG--HIETVRGVAVSKRHPYLFSA----------GEDKQVKCWDLEYNKVIRHYHGH 234 (460)
T ss_pred CCceeEEEEccc----CeEEEeecc--hhheeeeeeecccCceEEEe----------cCCCeeEEEechhhhhHHHhccc
Confidence 345799999999 88774 432 22268899999998888554 34478888899887755543322
Q ss_pred CccccceeeeeEEecCCcEEEEeecCCCCCCCCCCCCCCCCceeeccccccccchhhhhccCCccchhhhhhheeeEEEE
Q 004475 82 DICLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVL 161 (751)
Q Consensus 82 ~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 161 (751)
- + ++..+.-.|--..|+....+ +.+.+
T Consensus 235 l---S-~V~~L~lhPTldvl~t~grD-------------------------------------------------st~Rv 261 (460)
T KOG0285|consen 235 L---S-GVYCLDLHPTLDVLVTGGRD-------------------------------------------------STIRV 261 (460)
T ss_pred c---c-eeEEEeccccceeEEecCCc-------------------------------------------------ceEEE
Confidence 1 1 35566777877666654321 34455
Q ss_pred EcC-CC-CceecCCC-ceEEeeeeCCCCceEEEEEecCCcccccccCCCceeEEEEeCCCc-eeeeeccCCCCCCCCCcc
Q 004475 162 GSL-DG-TAKDFGTP-AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGK-LVRELCDLPPAEDIPVCY 237 (751)
Q Consensus 162 ~~~-~G-~~~~lt~~-~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~-~~~~l~~~~~~~~~~~~~ 237 (751)
+|+ +. ++..+..+ ..+..+.+.|-.-+|+..+.+ ..+.+||+..+ ....++.+.
T Consensus 262 WDiRtr~~V~~l~GH~~~V~~V~~~~~dpqvit~S~D-------------~tvrlWDl~agkt~~tlt~hk--------- 319 (460)
T KOG0285|consen 262 WDIRTRASVHVLSGHTNPVASVMCQPTDPQVITGSHD-------------STVRLWDLRAGKTMITLTHHK--------- 319 (460)
T ss_pred eeecccceEEEecCCCCcceeEEeecCCCceEEecCC-------------ceEEEeeeccCceeEeeeccc---------
Confidence 555 33 44444444 555566666644455554443 46889999744 444554443
Q ss_pred CCccCCCceeeeecCCCc
Q 004475 238 NSVREGMRSISWRADKPS 255 (751)
Q Consensus 238 ~~~~~~~~~~~~spdG~~ 255 (751)
..+|.++.+|.-..
T Consensus 320 ----ksvral~lhP~e~~ 333 (460)
T KOG0285|consen 320 ----KSVRALCLHPKENL 333 (460)
T ss_pred ----ceeeEEecCCchhh
Confidence 33667788887643
No 440
>PF11187 DUF2974: Protein of unknown function (DUF2974); InterPro: IPR024499 This family of proteins has no known function.
Probab=95.24 E-value=0.035 Score=53.00 Aligned_cols=49 Identities=20% Similarity=0.206 Sum_probs=34.1
Q ss_pred HHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCC----CceeEEEEccCC
Q 004475 587 AAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAP----HLFCCGIARSGS 635 (751)
Q Consensus 587 ~~v~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~p----~~~~~~v~~~~~ 635 (751)
.|++|+.+...-.+.+|.+.|||.||++|..+++..+ +++..++.+.++
T Consensus 70 ~A~~yl~~~~~~~~~~i~v~GHSkGGnLA~yaa~~~~~~~~~rI~~vy~fDgP 122 (224)
T PF11187_consen 70 SALAYLKKIAKKYPGKIYVTGHSKGGNLAQYAAANCDDEIQDRISKVYSFDGP 122 (224)
T ss_pred HHHHHHHHHHHhCCCCEEEEEechhhHHHHHHHHHccHHHhhheeEEEEeeCC
Confidence 4455554431112346999999999999999998843 467788877764
No 441
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=95.22 E-value=2.2 Score=41.81 Aligned_cols=58 Identities=7% Similarity=-0.003 Sum_probs=35.2
Q ss_pred EEEecCCceEEEeeeecccceeEEEecCCCCCC-cceeeee-cccccccCCCCCCCeeeCCCCCEEEEee
Q 004475 303 VSWCDDSLALVNETWYKTSQTRTWLVCPGSKDV-APRVLFD-RVFENVYSDPGSPMMTRTSTGTNVIAKI 370 (751)
Q Consensus 303 ~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~~-~~~~l~~-~~~~~~~~~~~~~~~~~spDG~~l~~~~ 370 (751)
+++.|-+++|+... ....+|..+++..+. ....++. .....+.. .+||.||..|+...
T Consensus 313 f~~d~~~~~la~gn----q~g~v~vwdL~~~ep~~~ttl~~s~~~~tVRQ------~sfS~dgs~lv~vc 372 (385)
T KOG1034|consen 313 FAFDPWQKMLALGN----QSGKVYVWDLDNNEPPKCTTLTHSKSGSTVRQ------TSFSRDGSILVLVC 372 (385)
T ss_pred EeecHHHHHHhhcc----CCCcEEEEECCCCCCccCceEEeccccceeee------eeecccCcEEEEEe
Confidence 56667788877644 335788888877422 1122322 22222222 77999999888877
No 442
>KOG2183 consensus Prolylcarboxypeptidase (angiotensinase C) [Posttranslational modification, protein turnover, chaperones; General function prediction only]
Probab=95.15 E-value=0.024 Score=57.00 Aligned_cols=57 Identities=25% Similarity=0.303 Sum_probs=48.1
Q ss_pred HHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEccC
Q 004475 578 VEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSG 634 (751)
Q Consensus 578 ~~~~~~d~~~~v~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~ 634 (751)
.++...|....+.+|++........|+++|.|+||++|++.=.++|..+.++++.+.
T Consensus 144 seQALADfA~ll~~lK~~~~a~~~pvIafGGSYGGMLaAWfRlKYPHiv~GAlAaSA 200 (492)
T KOG2183|consen 144 SEQALADFAELLTFLKRDLSAEASPVIAFGGSYGGMLAAWFRLKYPHIVLGALAASA 200 (492)
T ss_pred HHHHHHHHHHHHHHHhhccccccCcEEEecCchhhHHHHHHHhcChhhhhhhhhccC
Confidence 356689999999999887555667899999999999999999999998877666554
No 443
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=95.03 E-value=0.67 Score=47.34 Aligned_cols=49 Identities=20% Similarity=0.293 Sum_probs=36.2
Q ss_pred ceeEEeecCCCCCCCCcccccCCCCcccccceeecCCCCeEEEEEeecccccccCCceeEEE
Q 004475 5 TGIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWI 66 (751)
Q Consensus 5 ~~~~~~~~~~~~~~g~~~~l~~~~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~~~~~l~i 66 (751)
.+||+|.|++ |....+- ...-+.++-..||-||+.|...++ ++...+|.
T Consensus 103 g~lYlWelss----G~LL~v~-~aHYQ~ITcL~fs~dgs~iiTgsk--------Dg~V~vW~ 151 (476)
T KOG0646|consen 103 GNLYLWELSS----GILLNVL-SAHYQSITCLKFSDDGSHIITGSK--------DGAVLVWL 151 (476)
T ss_pred CcEEEEEecc----ccHHHHH-HhhccceeEEEEeCCCcEEEecCC--------CccEEEEE
Confidence 3899999999 9998875 233347888999999999866432 55556663
No 444
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=95.03 E-value=4.9 Score=41.31 Aligned_cols=39 Identities=5% Similarity=-0.052 Sum_probs=24.3
Q ss_pred EEEEEcC-CCCceec-CCC-ceEEeeeeCCCCceEEEEEecC
Q 004475 158 QLVLGSL-DGTAKDF-GTP-AVYTAVEPSPDQKYVLITSMHR 196 (751)
Q Consensus 158 ~l~~~~~-~G~~~~l-t~~-~~~~~~~~SpDG~~i~~~~~~~ 196 (751)
.+.+++. ++++.+. +.+ +.+.+.+|-..-..++..+.++
T Consensus 225 ~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt~~lys~s~Dr 266 (479)
T KOG0299|consen 225 HVQIWDCDTLEHVKVFKGHRGAVSSLAFRKGTSELYSASADR 266 (479)
T ss_pred eEEEecCcccchhhcccccccceeeeeeecCccceeeeecCC
Confidence 5557777 6665554 545 7777888865445666655443
No 445
>PF07519 Tannase: Tannase and feruloyl esterase; InterPro: IPR011118 This family includes fungal tannase [] and feruloyl esterase [, ]. It also includes several bacterial homologues of unknown function.
Probab=95.03 E-value=0.31 Score=52.53 Aligned_cols=67 Identities=15% Similarity=0.317 Sum_probs=53.2
Q ss_pred CCEEEEEcCCCCCCCCChHHHHHHHHHHHhC-CC-------cEEEEEeCCCCCcCCcc-ccHHHHHHHHHHHHHHHhc
Q 004475 673 KPILIIHGEVDDKVGLFPMQAERFFDALKGH-GA-------LSRLVLLPFEHHVYAAR-ENVMHVIWETDRWLQKYCL 741 (751)
Q Consensus 673 ~P~li~~G~~D~~vp~~~~~~~~~~~~l~~~-~~-------~~~~~~~~~~~H~~~~~-~~~~~~~~~~~~fl~~~l~ 741 (751)
..+|+.||..|+++| +..+..+|+++.+. +. =.+|.++||.+|..... ...-+.+..+.+|.++-..
T Consensus 354 GKLI~~HG~aD~~I~--p~~ti~YY~~V~~~~g~~~~~v~dF~RlF~vPGm~HC~gG~g~~~~d~l~aL~~WVE~G~A 429 (474)
T PF07519_consen 354 GKLILYHGWADPLIP--PQGTIDYYERVVARMGGALADVDDFYRLFMVPGMGHCGGGPGPDPFDALTALVDWVENGKA 429 (474)
T ss_pred CeEEEEecCCCCccC--CCcHHHHHHHHHHhcccccccccceeEEEecCCCcccCCCCCCCCCCHHHHHHHHHhCCCC
Confidence 569999999999999 99999999998653 21 27899999999987644 3344788889999986443
No 446
>KOG1214 consensus Nidogen and related basement membrane protein proteins [Cell wall/membrane/envelope biogenesis; Extracellular structures]
Probab=94.86 E-value=1.5 Score=48.16 Aligned_cols=125 Identities=22% Similarity=0.208 Sum_probs=77.1
Q ss_pred eeEEEEeCCCceeeeeccCCCCCCCCCccCCccCCCceeeeecCCCceEEEEEeccCCCCccccCcccceeeccCCCCCC
Q 004475 209 QKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEG 288 (751)
Q Consensus 209 ~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~spdG~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 288 (751)
.+|-+..+++++.+.|.... -.+.|++...|=+.. |||+. ..+....|-+.+++ |
T Consensus 1090 D~IevA~LdG~~rkvLf~td------------LVNPR~iv~D~~rgn-LYwtD---------WnRenPkIets~mD---G 1144 (1289)
T KOG1214|consen 1090 DKIEVALLDGSERKVLFYTD------------LVNPRAIVVDPIRGN-LYWTD---------WNRENPKIETSSMD---G 1144 (1289)
T ss_pred chhheeecCCceeeEEEeec------------ccCcceEEeecccCc-eeecc---------ccccCCcceeeccC---C
Confidence 35667778887766553322 234667888888887 88853 22233477788886 6
Q ss_pred CCceEeEeeceeEE--EEEecCCceEEEeeeecccceeEEEecCCCCCCcceeeeecccccccCCCCCCCeeeCCCCCEE
Q 004475 289 EKPEILHKLDLRFS--VSWCDDSLALVNETWYKTSQTRTWLVCPGSKDVAPRVLFDRVFENVYSDPGSPMMTRTSTGTNV 366 (751)
Q Consensus 289 ~~~~~l~~~~~~~~--~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~spDG~~l 366 (751)
...+.+...+-.+- +.|.|..+.|.+.- .+..+|--+..++. ..+.+. .+.+. | ++...+++.+
T Consensus 1145 ~NrRilin~DigLPNGLtfdpfs~~LCWvD---AGt~rleC~~p~g~--gRR~i~-~~LqY-------P-F~itsy~~~f 1210 (1289)
T KOG1214|consen 1145 ENRRILINTDIGLPNGLTFDPFSKLLCWVD---AGTKRLECTLPDGT--GRRVIQ-NNLQY-------P-FSITSYADHF 1210 (1289)
T ss_pred ccceEEeecccCCCCCceeCcccceeeEEe---cCCcceeEecCCCC--cchhhh-hcccC-------c-eeeeeccccc
Confidence 67777777665554 88889888887754 33345555555553 222222 22221 1 5577888888
Q ss_pred EEeeee
Q 004475 367 IAKIKK 372 (751)
Q Consensus 367 ~~~~~~ 372 (751)
++..+.
T Consensus 1211 Y~TDWk 1216 (1289)
T KOG1214|consen 1211 YHTDWK 1216 (1289)
T ss_pred eeeccc
Confidence 888754
No 447
>PLN02209 serine carboxypeptidase
Probab=94.69 E-value=0.3 Score=51.99 Aligned_cols=62 Identities=13% Similarity=0.056 Sum_probs=48.0
Q ss_pred CCCEEEEEcCCCCCCCCChHHHHHHHHHHHhCC--------------------Cc-EEEEEeCCCCCcCCccccHHHHHH
Q 004475 672 KKPILIIHGEVDDKVGLFPMQAERFFDALKGHG--------------------AL-SRLVLLPFEHHVYAARENVMHVIW 730 (751)
Q Consensus 672 ~~P~li~~G~~D~~vp~~~~~~~~~~~~l~~~~--------------------~~-~~~~~~~~~~H~~~~~~~~~~~~~ 730 (751)
..++||..|..|.+|+ ...+++..+.|.=.+ .. ..+..+-++||... ..++..+.
T Consensus 351 girVLiY~GD~D~icn--~~Gte~wi~~L~w~~~~~~~~w~~~~q~aG~vk~y~n~Ltfv~V~~AGHmVp--~qP~~al~ 426 (437)
T PLN02209 351 GYRSLIFSGDHDITMP--FQATQAWIKSLNYSIIDDWRPWMIKGQIAGYTRTYSNKMTFATVKGGGHTAE--YLPEESSI 426 (437)
T ss_pred CceEEEEECCccccCC--cHhHHHHHHhcCCccCCCeeeeEECCEeeeEEEEeCCceEEEEEcCCCCCcC--cCHHHHHH
Confidence 3689999999999998 888888888875111 12 56777889999883 47778888
Q ss_pred HHHHHHH
Q 004475 731 ETDRWLQ 737 (751)
Q Consensus 731 ~~~~fl~ 737 (751)
.+.+|+.
T Consensus 427 m~~~fi~ 433 (437)
T PLN02209 427 MFQRWIS 433 (437)
T ss_pred HHHHHHc
Confidence 8888885
No 448
>PF01764 Lipase_3: Lipase (class 3); InterPro: IPR002921 Triglyceride lipases are lipolytic enzymes that hydrolyse ester linkages of triglycerides []. Lipases are widely distributed in animals, plants and prokaryotes. This family of lipases have been called Class 3 as they are not closely related to other lipase families.; GO: 0004806 triglyceride lipase activity, 0006629 lipid metabolic process; PDB: 1LGY_A 1DTE_A 1DT5_F 4DYH_B 1DU4_C 4EA6_B 1GT6_B 1EIN_A 1DT3_A 1TIB_A ....
Probab=94.56 E-value=0.085 Score=46.54 Aligned_cols=39 Identities=26% Similarity=0.319 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHh
Q 004475 581 LVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAH 621 (751)
Q Consensus 581 ~~~d~~~~v~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~ 621 (751)
..+.+.+.++.+.+... ..+|.+.|||+||.+|..++..
T Consensus 46 ~~~~~~~~l~~~~~~~~--~~~i~itGHSLGGalA~l~a~~ 84 (140)
T PF01764_consen 46 LYDQILDALKELVEKYP--DYSIVITGHSLGGALASLAAAD 84 (140)
T ss_dssp HHHHHHHHHHHHHHHST--TSEEEEEEETHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccc--CccchhhccchHHHHHHHHHHh
Confidence 34455566655655543 3789999999999999999875
No 449
>PRK10252 entF enterobactin synthase subunit F; Provisional
Probab=94.32 E-value=0.19 Score=62.91 Aligned_cols=76 Identities=11% Similarity=0.055 Sum_probs=49.9
Q ss_pred HhCCeEEEEcCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHh---CCCcee
Q 004475 551 LARRFAVLAGPSIPIIGEGDKLPNDRFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAH---APHLFC 627 (751)
Q Consensus 551 ~~~G~~v~~~~~~~~~g~g~~~~~~~~~~~~~~d~~~~v~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~---~p~~~~ 627 (751)
...++.|+. .+..|++.........+.+.+++.+.++.+. ...++.++|||+||.+|..+|.+ .++++.
T Consensus 1091 l~~~~~v~~---~~~~g~~~~~~~~~~l~~la~~~~~~i~~~~-----~~~p~~l~G~S~Gg~vA~e~A~~l~~~~~~v~ 1162 (1296)
T PRK10252 1091 LDPQWSIYG---IQSPRPDGPMQTATSLDEVCEAHLATLLEQQ-----PHGPYHLLGYSLGGTLAQGIAARLRARGEEVA 1162 (1296)
T ss_pred cCCCCcEEE---EECCCCCCCCCCCCCHHHHHHHHHHHHHhhC-----CCCCEEEEEechhhHHHHHHHHHHHHcCCcee
Confidence 345788888 3444554433333445566666655554331 12479999999999999999885 467788
Q ss_pred EEEEccC
Q 004475 628 CGIARSG 634 (751)
Q Consensus 628 ~~v~~~~ 634 (751)
.+++..+
T Consensus 1163 ~l~l~~~ 1169 (1296)
T PRK10252 1163 FLGLLDT 1169 (1296)
T ss_pred EEEEecC
Confidence 8777665
No 450
>COG3946 VirJ Type IV secretory pathway, VirJ component [Intracellular trafficking and secretion]
Probab=94.32 E-value=0.14 Score=51.54 Aligned_cols=78 Identities=17% Similarity=0.198 Sum_probs=56.4
Q ss_pred cCCCCchHHHHHHhCCeEEEEcCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHH
Q 004475 539 FSGMTPTSSLIFLARRFAVLAGPSIPIIGEGDKLPNDRFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHL 618 (751)
Q Consensus 539 ~~~~~~~~~~~~~~~G~~v~~~~~~~~~g~g~~~~~~~~~~~~~~d~~~~v~~l~~~~~id~~~i~l~G~S~GG~~a~~~ 618 (751)
|..+-......|..+|+-|+..|...|. ......+....|+.+++++...+. ...++.++|+|+|+=+-..+
T Consensus 272 Wr~lDk~v~~~l~~~gvpVvGvdsLRYf------W~~rtPe~~a~Dl~r~i~~y~~~w--~~~~~~liGySfGADvlP~~ 343 (456)
T COG3946 272 WRDLDKEVAEALQKQGVPVVGVDSLRYF------WSERTPEQIAADLSRLIRFYARRW--GAKRVLLIGYSFGADVLPFA 343 (456)
T ss_pred hhhhhHHHHHHHHHCCCceeeeehhhhh------hccCCHHHHHHHHHHHHHHHHHhh--CcceEEEEeecccchhhHHH
Confidence 3334445677889999999985553332 222345778899999999998774 35799999999999888777
Q ss_pred HHhCCC
Q 004475 619 LAHAPH 624 (751)
Q Consensus 619 a~~~p~ 624 (751)
-.+-|.
T Consensus 344 ~n~L~~ 349 (456)
T COG3946 344 YNRLPP 349 (456)
T ss_pred HHhCCH
Confidence 666544
No 451
>COG1075 LipA Predicted acetyltransferases and hydrolases with the alpha/beta hydrolase fold [General function prediction only]
Probab=94.29 E-value=0.11 Score=53.40 Aligned_cols=49 Identities=18% Similarity=0.190 Sum_probs=36.7
Q ss_pred HHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCC--CceeEEEEccCC
Q 004475 585 AEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAP--HLFCCGIARSGS 635 (751)
Q Consensus 585 ~~~~v~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~p--~~~~~~v~~~~~ 635 (751)
+..-|+.+..... ..+|.++||||||..+.+++...+ .+++.++.+++.
T Consensus 113 l~~~V~~~l~~~g--a~~v~LigHS~GG~~~ry~~~~~~~~~~V~~~~tl~tp 163 (336)
T COG1075 113 LFAYVDEVLAKTG--AKKVNLIGHSMGGLDSRYYLGVLGGANRVASVVTLGTP 163 (336)
T ss_pred HHHHHHHHHhhcC--CCceEEEeecccchhhHHHHhhcCccceEEEEEEeccC
Confidence 3344444443322 368999999999999999998887 789999988875
No 452
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=94.28 E-value=5.4 Score=40.95 Aligned_cols=46 Identities=13% Similarity=0.037 Sum_probs=29.9
Q ss_pred eeEEEEEcCCCCeeeccCC----------CCccccceeeeeEEecCCcEEEEeecC
Q 004475 62 LRVWIADAETGEAKPLFES----------PDICLNAVFGSFVWVNNSTLLIFTIPS 107 (751)
Q Consensus 62 ~~l~i~~~~~g~~~~lt~~----------~~~~~~~~~~~~~wspDg~~l~~~~~~ 107 (751)
+.|+.++.+|...+.+.-. ....-|.++..++++|||+.|+.....
T Consensus 112 p~I~~~~~~G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~E~ 167 (326)
T PF13449_consen 112 PRIRRFDLDGRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAMES 167 (326)
T ss_pred CEEEEECCCCcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEECc
Confidence 8999999874333433111 111234567899999999988877554
No 453
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=94.24 E-value=5.7 Score=38.51 Aligned_cols=55 Identities=22% Similarity=0.146 Sum_probs=35.6
Q ss_pred ceeEEeecCCCCCCCCcccccCCCCccccccee--ecCCCCeEEEEEeecccccccCCceeEEEEEcCCCCee
Q 004475 5 TGIGIHRLLPDDSLGPEKEVHGYPDGAKINFVS--WSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAK 75 (751)
Q Consensus 5 ~~~~~~~~~~~~~~g~~~~l~~~~~~~~~~~p~--~SPDG~~iaf~~~~~~~~~~~~~~~~l~i~~~~~g~~~ 75 (751)
..|..+|+.+ |+...-..+.. ....+. ..+++.+|+.. .....|+.+++.+|+..
T Consensus 3 g~l~~~d~~t----G~~~W~~~~~~--~~~~~~~~~~~~~~~v~~~----------~~~~~l~~~d~~tG~~~ 59 (238)
T PF13360_consen 3 GTLSALDPRT----GKELWSYDLGP--GIGGPVATAVPDGGRVYVA----------SGDGNLYALDAKTGKVL 59 (238)
T ss_dssp SEEEEEETTT----TEEEEEEECSS--SCSSEEETEEEETTEEEEE----------ETTSEEEEEETTTSEEE
T ss_pred CEEEEEECCC----CCEEEEEECCC--CCCCccceEEEeCCEEEEE----------cCCCEEEEEECCCCCEE
Confidence 3577888877 88886554421 133344 45577777664 35689999999888743
No 454
>TIGR03712 acc_sec_asp2 accessory Sec system protein Asp2. This protein is designated Asp2 because, along with SecY2, SecA2, and other proteins it is part of the accessory secretory protein system. The system is involved in the export of serine-rich glycoproteins important for virulence in a number of Gram-positive species, including Streptococcus gordonii and Staphylococcus aureus. This protein family is assigned to transport rather than glycosylation function, but the specific molecular role is unknown.
Probab=94.21 E-value=2.5 Score=44.34 Aligned_cols=55 Identities=15% Similarity=0.129 Sum_probs=40.3
Q ss_pred hHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEccCCCC
Q 004475 577 FVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGSYN 637 (751)
Q Consensus 577 ~~~~~~~d~~~~v~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~~d 637 (751)
+...+.+-+..++++| ..+.+.++|.|.|||.+-|+..+++- ...|+|..-|+.+
T Consensus 337 yE~~I~~~I~~~L~~L----gF~~~qLILSGlSMGTfgAlYYga~l--~P~AIiVgKPL~N 391 (511)
T TIGR03712 337 YEQGIINVIQEKLDYL----GFDHDQLILSGLSMGTFGALYYGAKL--SPHAIIVGKPLVN 391 (511)
T ss_pred HHHHHHHHHHHHHHHh----CCCHHHeeeccccccchhhhhhcccC--CCceEEEcCcccc
Confidence 4444455555555555 46778999999999999999999875 2367788778766
No 455
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.09 E-value=6.3 Score=38.47 Aligned_cols=107 Identities=12% Similarity=0.249 Sum_probs=61.7
Q ss_pred eeeeeEEecCCcEEEEeecCCCCCCCCCCCCCCCCceeeccccccccchhhhhccCCccchhhhhhheeeEEEEEcCCCC
Q 004475 88 VFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSLDGT 167 (751)
Q Consensus 88 ~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~G~ 167 (751)
.++.+.|+||.+.|+.+... ..+|..++.+|+
T Consensus 87 nvS~LTynp~~rtLFav~n~------------------------------------------------p~~iVElt~~Gd 118 (316)
T COG3204 87 NVSSLTYNPDTRTLFAVTNK------------------------------------------------PAAIVELTKEGD 118 (316)
T ss_pred cccceeeCCCcceEEEecCC------------------------------------------------CceEEEEecCCc
Confidence 36789999999999877331 147777788884
Q ss_pred c-eecCC--CceEEeeeeCCCCceEEEEEecCCcccccccCCCceeEEEE--eCCCceeeeec-cCCCCCCCCCccCCcc
Q 004475 168 A-KDFGT--PAVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVW--TTDGKLVRELC-DLPPAEDIPVCYNSVR 241 (751)
Q Consensus 168 ~-~~lt~--~~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~l~~~--d~~~~~~~~l~-~~~~~~~~~~~~~~~~ 241 (751)
. ++++- ..+...+.|.-+|++++.... ...++.+ +.++.....-. ..++. .....+
T Consensus 119 lirtiPL~g~~DpE~Ieyig~n~fvi~dER-------------~~~l~~~~vd~~t~~~~~~~~~i~L~-----~~~k~N 180 (316)
T COG3204 119 LIRTIPLTGFSDPETIEYIGGNQFVIVDER-------------DRALYLFTVDADTTVISAKVQKIPLG-----TTNKKN 180 (316)
T ss_pred eEEEecccccCChhHeEEecCCEEEEEehh-------------cceEEEEEEcCCccEEeccceEEecc-----ccCCCC
Confidence 3 33322 255567888888887765422 2345544 44443222111 11111 011113
Q ss_pred CCCceeeeecCCCceEEEEE
Q 004475 242 EGMRSISWRADKPSTLYWVE 261 (751)
Q Consensus 242 ~~~~~~~~spdG~~~i~~~~ 261 (751)
.|.-+++|+|...+ ++++.
T Consensus 181 ~GfEGlA~d~~~~~-l~~aK 199 (316)
T COG3204 181 KGFEGLAWDPVDHR-LFVAK 199 (316)
T ss_pred cCceeeecCCCCce-EEEEE
Confidence 45568999999999 44443
No 456
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=93.87 E-value=4.1 Score=41.93 Aligned_cols=84 Identities=14% Similarity=0.042 Sum_probs=41.7
Q ss_pred CCCceeeeecCCCceEEEEEeccCC--CCccccCcccceeeccCCCCCCC-------------CceEeEeeceeEE-EEE
Q 004475 242 EGMRSISWRADKPSTLYWVEAQDRG--DANVEVSPRDIIYTQPAEPAEGE-------------KPEILHKLDLRFS-VSW 305 (751)
Q Consensus 242 ~~~~~~~~spdG~~~i~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~-------------~~~~l~~~~~~~~-~~~ 305 (751)
.....+.|.||| + |++.-..... ........++.|.+++.+ +. .......+-.... ++|
T Consensus 114 H~g~~l~fgpDG-~-LYvs~G~~~~~~~~~~~~~~~G~ilri~~d---G~~p~dnP~~~~~~~~~~i~A~GlRN~~~~~~ 188 (331)
T PF07995_consen 114 HNGGGLAFGPDG-K-LYVSVGDGGNDDNAQDPNSLRGKILRIDPD---GSIPADNPFVGDDGADSEIYAYGLRNPFGLAF 188 (331)
T ss_dssp S-EEEEEE-TTS-E-EEEEEB-TTTGGGGCSTTSSTTEEEEEETT---SSB-TTSTTTTSTTSTTTEEEE--SEEEEEEE
T ss_pred CCCccccCCCCC-c-EEEEeCCCCCcccccccccccceEEEeccc---CcCCCCCccccCCCceEEEEEeCCCccccEEE
Confidence 344579999999 4 5554332222 111123345788888875 32 2334444444445 899
Q ss_pred ecCCceEEEeeeecccceeEEEecC
Q 004475 306 CDDSLALVNETWYKTSQTRTWLVCP 330 (751)
Q Consensus 306 spdg~~l~~~~~~~~~~~~l~~~~~ 330 (751)
.|....|+...+......+|.++..
T Consensus 189 d~~tg~l~~~d~G~~~~dein~i~~ 213 (331)
T PF07995_consen 189 DPNTGRLWAADNGPDGWDEINRIEP 213 (331)
T ss_dssp ETTTTEEEEEEE-SSSSEEEEEE-T
T ss_pred ECCCCcEEEEccCCCCCcEEEEecc
Confidence 9994445444433333356666643
No 457
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=93.80 E-value=9.4 Score=40.24 Aligned_cols=218 Identities=18% Similarity=0.220 Sum_probs=110.1
Q ss_pred ceeEEeecCCCCCCCC--cccccCCCCcccccceee-cCCCCeEEEEEeecccccccCCceeEEEEEcCC-CC-eeeccC
Q 004475 5 TGIGIHRLLPDDSLGP--EKEVHGYPDGAKINFVSW-SPDGKRIAFSVRVDEEDNVSSCKLRVWIADAET-GE-AKPLFE 79 (751)
Q Consensus 5 ~~~~~~~~~~~~~~g~--~~~l~~~~~~~~~~~p~~-SPDG~~iaf~~~~~~~~~~~~~~~~l~i~~~~~-g~-~~~lt~ 79 (751)
..+.+++... +. ...+..... ..+....+ ++|+..++.... .....+.+++..+ .. ...+..
T Consensus 87 ~~~~~~~~~~----~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~--------~~d~~~~~~~~~~~~~~~~~~~~ 153 (466)
T COG2319 87 GTIKLWDLDN----GEKLIKSLEGLHD-SSVSKLALSSPDGNSILLASS--------SLDGTVKLWDLSTPGKLIRTLEG 153 (466)
T ss_pred CcEEEEEcCC----CceeEEEEeccCC-CceeeEEEECCCcceEEeccC--------CCCccEEEEEecCCCeEEEEEec
Confidence 4567777766 53 333332111 12444455 899983333221 2234677777665 33 333332
Q ss_pred CCCccccceeeeeEEecCCcEEEEeecCCCCCCCCCCCCCCCCceeeccccccccchhhhhccCCccchhhhhhheeeEE
Q 004475 80 SPDICLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQL 159 (751)
Q Consensus 80 ~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 159 (751)
... .+..+.|+|+++.++.... .. ..+
T Consensus 154 ~~~-----~v~~~~~~~~~~~~~~~~~---~~---------------------------------------------~~~ 180 (466)
T COG2319 154 HSE-----SVTSLAFSPDGKLLASGSS---LD---------------------------------------------GTI 180 (466)
T ss_pred Ccc-----cEEEEEECCCCCEEEecCC---CC---------------------------------------------Cce
Confidence 222 3568899999995555421 00 355
Q ss_pred EEEcC-CC-CceecCCC-ceEEeeeeCCCCceEEEEEecCCcccccccCCCceeEEEEeCCCceeee--eccCCCCCCCC
Q 004475 160 VLGSL-DG-TAKDFGTP-AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRE--LCDLPPAEDIP 234 (751)
Q Consensus 160 ~~~~~-~G-~~~~lt~~-~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~--l~~~~~~~~~~ 234 (751)
.++++ .+ ....+..+ ..+..++|+|+|+.++..... ...+.+|+...+.... +..+.
T Consensus 181 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~------------d~~i~~wd~~~~~~~~~~~~~~~------ 242 (466)
T COG2319 181 KLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSS------------DGTIRLWDLSTGKLLRSTLSGHS------ 242 (466)
T ss_pred EEEEcCCCceEEeeccCCCceEEEEEcCCcceEEEEecC------------CCcEEEEECCCCcEEeeecCCCC------
Confidence 66666 33 23333333 678899999999944443111 2345567665333222 11110
Q ss_pred CccCCccCCCceeeeecCCCceEEEEEeccCCCCccccCcccceeeccCCCCCCCCceEeEeeceeEE-EEEecCCceEE
Q 004475 235 VCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFS-VSWCDDSLALV 313 (751)
Q Consensus 235 ~~~~~~~~~~~~~~~spdG~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~-~~~spdg~~l~ 313 (751)
... ...|+|++.. ++... ..+.+.++++... ......+......+. ..|+|++..++
T Consensus 243 -------~~~-~~~~~~~~~~-~~~~~------------~d~~~~~~~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~ 300 (466)
T COG2319 243 -------DSV-VSSFSPDGSL-LASGS------------SDGTIRLWDLRSS-SSLLRTLSGHSSSVLSVAFSPDGKLLA 300 (466)
T ss_pred -------cce-eEeECCCCCE-EEEec------------CCCcEEEeeecCC-CcEEEEEecCCccEEEEEECCCCCEEE
Confidence 011 1179999954 33221 2246666666411 111122212234455 78999888877
Q ss_pred EeeeecccceeEEEecCCC
Q 004475 314 NETWYKTSQTRTWLVCPGS 332 (751)
Q Consensus 314 ~~~~~~~~~~~l~~~~~~~ 332 (751)
... .+ ....+| +..+
T Consensus 301 ~~~-~d-~~~~~~--~~~~ 315 (466)
T COG2319 301 SGS-SD-GTVRLW--DLET 315 (466)
T ss_pred Eee-CC-CcEEEE--EcCC
Confidence 733 22 334566 5555
No 458
>PRK13614 lipoprotein LpqB; Provisional
Probab=93.78 E-value=3.7 Score=45.09 Aligned_cols=148 Identities=15% Similarity=0.116 Sum_probs=76.2
Q ss_pred EEEEEcCCCCceecCCCceEEeeeeCCCCceEEEEEecCCcccccccCCCceeEEEEeCCCc-eeeeeccCCCCCCCCCc
Q 004475 158 QLVLGSLDGTAKDFGTPAVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGK-LVRELCDLPPAEDIPVC 236 (751)
Q Consensus 158 ~l~~~~~~G~~~~lt~~~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~-~~~~l~~~~~~~~~~~~ 236 (751)
.|+.....+..+.+.....+..++|+++| +++...... ...+.++..++. +........ ....+
T Consensus 366 ~l~~~~~g~~~~~~~~g~~Lt~PS~d~~g-~vWtv~~g~-----------~~~vv~~~~~g~~~~~~~~~~~---v~~~~ 430 (573)
T PRK13614 366 TLYTVSPGQPARALTSGSTLTRPSFSPQD-WVWTAGPGG-----------NGRIVAYRPTGVAEGAQAPTVT---LTADW 430 (573)
T ss_pred EEEEecCCCcceeeecCCCccCCcccCCC-CEEEeeCCC-----------CceEEEEecCCCccccccccee---ecccc
Confidence 66766664555555555667789999999 777654332 124445444321 111000000 00001
Q ss_pred cCCccCCCceeeeecCCCceEEEEEeccCCCCccccCcccceeeccCCCCCCCCceEeEee-----ceeEE-EEEecCCc
Q 004475 237 YNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKL-----DLRFS-VSWCDDSL 310 (751)
Q Consensus 237 ~~~~~~~~~~~~~spdG~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~-----~~~~~-~~~spdg~ 310 (751)
+. ...+..+..|+||-+++++++ .+ .+.+|++-.+....++.++.|+.. ..... +.|..++.
T Consensus 431 l~--g~~I~~lrvSrDG~R~Avi~~-~~---------g~~~V~va~V~R~~~G~P~~L~~~~~~~~~~~~~sl~W~~~~s 498 (573)
T PRK13614 431 LA--GRTVKELRVSREGVRALVISE-QN---------GKSRVQVAGIVRNEDGTPRELTAPITLAADSDADTGAWVGDST 498 (573)
T ss_pred cC--CCeeEEEEECCCccEEEEEEE-eC---------CccEEEEEEEEeCCCCCeEEccCceecccCCCcceeEEcCCCE
Confidence 11 122678999999999444443 11 223455544322223444454432 22344 89999988
Q ss_pred eEEEeeeecccceeEEEecCCCC
Q 004475 311 ALVNETWYKTSQTRTWLVCPGSK 333 (751)
Q Consensus 311 ~l~~~~~~~~~~~~l~~~~~~~~ 333 (751)
.++..... ..+..++++.++.+
T Consensus 499 l~V~~~~~-~~~~~~~~v~v~~g 520 (573)
T PRK13614 499 VVVTKASA-TSNVVPELLSVDAG 520 (573)
T ss_pred EEEEeccC-CCcceEEEEEeCCC
Confidence 66655432 23456777777543
No 459
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=93.78 E-value=1.1 Score=47.73 Aligned_cols=86 Identities=20% Similarity=0.383 Sum_probs=42.9
Q ss_pred CceEEEEEecCCcccccccCCCceeEEEEeCCCcee-eeeccCCCCCCCCCccCCccCCCceeeeecCCCceEEEEEecc
Q 004475 186 QKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLV-RELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQD 264 (751)
Q Consensus 186 G~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~spdG~~~i~~~~~~~ 264 (751)
|..|.+.... .|.+||.++++. +++ +.+ .++.+.||+||+. ++++.
T Consensus 117 G~LL~~~~~~--------------~i~~yDw~~~~~i~~i-~v~--------------~vk~V~Ws~~g~~-val~t--- 163 (443)
T PF04053_consen 117 GNLLGVKSSD--------------FICFYDWETGKLIRRI-DVS--------------AVKYVIWSDDGEL-VALVT--- 163 (443)
T ss_dssp SSSEEEEETT--------------EEEEE-TTT--EEEEE-SS---------------E-EEEEE-TTSSE-EEEE----
T ss_pred CcEEEEECCC--------------CEEEEEhhHcceeeEE-ecC--------------CCcEEEEECCCCE-EEEEe---
Confidence 8888776432 488999986643 333 111 1458899999998 66654
Q ss_pred CCCCccccCcccceeeccCCC-------CCCC--CceEeEeeceeEE-EEEecCCceEEEee
Q 004475 265 RGDANVEVSPRDIIYTQPAEP-------AEGE--KPEILHKLDLRFS-VSWCDDSLALVNET 316 (751)
Q Consensus 265 ~~~~~~~~~~~~~l~~~~~~~-------~~~~--~~~~l~~~~~~~~-~~~spdg~~l~~~~ 316 (751)
...+|+++.+. .+|- ....+.+....+. ..|-.| .++|++
T Consensus 164 ----------~~~i~il~~~~~~~~~~~~~g~e~~f~~~~E~~~~IkSg~W~~d--~fiYtT 213 (443)
T PF04053_consen 164 ----------KDSIYILKYNLEAVAAIPEEGVEDAFELIHEISERIKSGCWVED--CFIYTT 213 (443)
T ss_dssp ----------S-SEEEEEE-HHHHHHBTTTB-GGGEEEEEEE-S--SEEEEETT--EEEEE-
T ss_pred ----------CCeEEEEEecchhcccccccCchhceEEEEEecceeEEEEEEcC--EEEEEc
Confidence 23566655420 0111 2233334355555 788776 777766
No 460
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=93.64 E-value=5.1 Score=41.99 Aligned_cols=173 Identities=8% Similarity=-0.047 Sum_probs=77.9
Q ss_pred CCceeeeecCCCceEEEEEeccCCCCccc-cCcccceeeccCCCCCCCC--ceEeEeeceeEE-EEEecCCceEEEeeee
Q 004475 243 GMRSISWRADKPSTLYWVEAQDRGDANVE-VSPRDIIYTQPAEPAEGEK--PEILHKLDLRFS-VSWCDDSLALVNETWY 318 (751)
Q Consensus 243 ~~~~~~~spdG~~~i~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~--~~~l~~~~~~~~-~~~spdg~~l~~~~~~ 318 (751)
.++.++|.++|+ |++++..+-...... ....++|++++-...++.. .+.+........ +.+.++| |+++.
T Consensus 15 ~P~~ia~d~~G~--l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G--lyV~~-- 88 (367)
T TIGR02604 15 NPIAVCFDERGR--LWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG--VYVAT-- 88 (367)
T ss_pred CCceeeECCCCC--EEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC--EEEeC--
Confidence 345889999998 555543211111000 1112367776542222322 123332222234 7888988 44433
Q ss_pred cccceeEEEe-cCCCC---CCcceeeeec-ccccccCCCCCCCeeeCCCCCEEEEeeeecCCcceEEEEccCC--CCCCC
Q 004475 319 KTSQTRTWLV-CPGSK---DVAPRVLFDR-VFENVYSDPGSPMMTRTSTGTNVIAKIKKENDEQIYILLNGRG--FTPEG 391 (751)
Q Consensus 319 ~~~~~~l~~~-~~~~~---~~~~~~l~~~-~~~~~~~~~~~~~~~~spDG~~l~~~~~~~~~~~~~~~~~~~~--~~~~~ 391 (751)
...|+.+ +.++. ..+.+.+... .............++|.|||+ |++..... .+.. ...... .....
T Consensus 89 ---~~~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~-LYv~~G~~-~~~~--~~~~~~~~~~~~~ 161 (367)
T TIGR02604 89 ---PPDILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGW-LYFNHGNT-LASK--VTRPGTSDESRQG 161 (367)
T ss_pred ---CCeEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCC-EEEecccC-CCce--eccCCCccCcccc
Confidence 2357766 44332 1123334322 111000011122377999995 65544210 0000 000000 01112
Q ss_pred CCceeEEEecCCCceeEEeeccchhhhhceeeeecCCcceeeccCCCEE
Q 004475 392 NIPFLDLFDINTGSKERIWESNREKYFETAVALVFGQGEEDINLNQLKI 440 (751)
Q Consensus 392 ~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l 440 (751)
....+++++.++++.+.+. .. ...+..++|+++|+.+
T Consensus 162 ~~g~i~r~~pdg~~~e~~a-~G-----------~rnp~Gl~~d~~G~l~ 198 (367)
T TIGR02604 162 LGGGLFRYNPDGGKLRVVA-HG-----------FQNPYGHSVDSWGDVF 198 (367)
T ss_pred cCceEEEEecCCCeEEEEe-cC-----------cCCCccceECCCCCEE
Confidence 2357999999877655442 11 2233446899988653
No 461
>PLN03016 sinapoylglucose-malate O-sinapoyltransferase
Probab=93.45 E-value=0.76 Score=48.90 Aligned_cols=63 Identities=14% Similarity=0.135 Sum_probs=48.3
Q ss_pred CCCEEEEEcCCCCCCCCChHHHHHHHHHHHhCC--------------------Cc-EEEEEeCCCCCcCCccccHHHHHH
Q 004475 672 KKPILIIHGEVDDKVGLFPMQAERFFDALKGHG--------------------AL-SRLVLLPFEHHVYAARENVMHVIW 730 (751)
Q Consensus 672 ~~P~li~~G~~D~~vp~~~~~~~~~~~~l~~~~--------------------~~-~~~~~~~~~~H~~~~~~~~~~~~~ 730 (751)
..++||..|..|.+|| ....++..++|.=.+ .. ..+.++-++||... ..+...+.
T Consensus 347 ~irVLiY~Gd~D~icn--~~Gt~~wi~~L~w~~~~~~~~w~~~~~~~G~vk~y~n~ltfv~V~~AGHmVp--~qP~~al~ 422 (433)
T PLN03016 347 GYRSLIYSGDHDIAVP--FLATQAWIRSLNYSPIHNWRPWMINNQIAGYTRAYSNKMTFATIKAGGHTAE--YRPNETFI 422 (433)
T ss_pred CceEEEEECCccccCC--cHhHHHHHHhCCCCCCCCcccccCCCEeeeEEEEeCCceEEEEEcCCCCCCC--CCHHHHHH
Confidence 3689999999999998 888888888874111 12 56777889999983 46778888
Q ss_pred HHHHHHHH
Q 004475 731 ETDRWLQK 738 (751)
Q Consensus 731 ~~~~fl~~ 738 (751)
.+.+|+..
T Consensus 423 m~~~Fi~~ 430 (433)
T PLN03016 423 MFQRWISG 430 (433)
T ss_pred HHHHHHcC
Confidence 88888853
No 462
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=93.42 E-value=5.6 Score=38.01 Aligned_cols=82 Identities=11% Similarity=-0.036 Sum_probs=46.3
Q ss_pred ceeEEeecCCCCCCCCcccccCCCCcccccceeecCCCCeEEEEEeecccccccCCceeEEEEEcCCCCe--eeccCCCC
Q 004475 5 TGIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEA--KPLFESPD 82 (751)
Q Consensus 5 ~~~~~~~~~~~~~~g~~~~l~~~~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~~~~~l~i~~~~~g~~--~~lt~~~~ 82 (751)
..+.+++++. +..+.....+. ....+.++|||+++++.|. ...+|+.+.++...+ ..++.-+.
T Consensus 138 ht~k~~~~~~----~s~~~~~h~~~-~~~ns~~~snd~~~~~~Vg----------ds~~Vf~y~id~~sey~~~~~~a~t 202 (344)
T KOG4532|consen 138 HTGKTMVVSG----DSNKFAVHNQN-LTQNSLHYSNDPSWGSSVG----------DSRRVFRYAIDDESEYIENIYEAPT 202 (344)
T ss_pred cceeEEEEec----Ccccceeeccc-cceeeeEEcCCCceEEEec----------CCCcceEEEeCCccceeeeeEeccc
Confidence 3567777777 55555432232 2367899999999999984 335677666654332 22211111
Q ss_pred ccccceeeeeEEecCCcEEEEe
Q 004475 83 ICLNAVFGSFVWVNNSTLLIFT 104 (751)
Q Consensus 83 ~~~~~~~~~~~wspDg~~l~~~ 104 (751)
.+ + --...||-.....|..
T Consensus 203 ~D-~--gF~~S~s~~~~~FAv~ 221 (344)
T KOG4532|consen 203 SD-H--GFYNSFSENDLQFAVV 221 (344)
T ss_pred CC-C--ceeeeeccCcceEEEE
Confidence 10 0 1234787666555555
No 463
>PRK13615 lipoprotein LpqB; Provisional
Probab=93.36 E-value=5.4 Score=43.74 Aligned_cols=141 Identities=16% Similarity=0.124 Sum_probs=75.4
Q ss_pred EEEEEcCCCCceecCCCceEEeeeeCCCCceEEEEEecCCcccccccCCCceeEEEEeCCCceeeeeccCCCCCCCCCcc
Q 004475 158 QLVLGSLDGTAKDFGTPAVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCY 237 (751)
Q Consensus 158 ~l~~~~~~G~~~~lt~~~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~ 237 (751)
.|++-...|..+.+.....+..++|+++| +++...... ...+.....++ +...+ ..+..
T Consensus 356 ~l~vg~~~~~~~~~~~~~~Lt~PS~d~~g-~vWtv~~g~-----------~~~l~~~~~~G-~~~~v-~v~~~------- 414 (557)
T PRK13615 356 VWSVGDGDRDAVLLDTRPGLVAPSLDAQG-YVWSTPASD-----------PRGLVAWGPDG-VGHPV-AVSWT------- 414 (557)
T ss_pred eEEEecCCCcceeeccCCccccCcCcCCC-CEEEEeCCC-----------ceEEEEecCCC-ceEEe-ecccc-------
Confidence 45544445555555544667789999999 777654332 11222333222 23222 11211
Q ss_pred CCccCCCceeeeecCCCceEEEEEeccCCCCccccCcccceeeccCCCCCCCCceEe-Ee------eceeEE-EEEecCC
Q 004475 238 NSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEIL-HK------LDLRFS-VSWCDDS 309 (751)
Q Consensus 238 ~~~~~~~~~~~~spdG~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l-~~------~~~~~~-~~~spdg 309 (751)
....+..+..|+||-+++++++ . ..+++|++..+.. .++.++.| +. ..+... +.|..++
T Consensus 415 --~~~~I~~lrvSrDG~R~Avi~~-~---------~g~~~V~va~V~R-~~~~P~~L~~~p~~l~~~l~~v~sl~W~~~~ 481 (557)
T PRK13615 415 --ATGRVVSLEVARDGARVLVQLE-T---------GAGPQLLVASIVR-DGGVPTSLTTTPLELLASPGTPLDATWVDEL 481 (557)
T ss_pred --CCCeeEEEEeCCCccEEEEEEe-c---------CCCCEEEEEEEEe-CCCcceEeeeccEEcccCcCcceeeEEcCCC
Confidence 1123678999999999444433 1 1224566544322 24444444 22 223444 8999999
Q ss_pred ceEEEeeeecccceeEEEecCCCC
Q 004475 310 LALVNETWYKTSQTRTWLVCPGSK 333 (751)
Q Consensus 310 ~~l~~~~~~~~~~~~l~~~~~~~~ 333 (751)
..++..... ..+..++++.+.+.
T Consensus 482 ~laVl~~~~-~~~~~v~~v~v~g~ 504 (557)
T PRK13615 482 DVATLTLAP-DGERQVELHQVGGP 504 (557)
T ss_pred EEEEEeccC-CCCceEEEEECCCc
Confidence 965555322 24456788888764
No 464
>KOG2565 consensus Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]
Probab=93.11 E-value=0.51 Score=47.12 Aligned_cols=119 Identities=18% Similarity=0.207 Sum_probs=68.0
Q ss_pred CCceEEEEEEcCCCCCCCCCCCccEEEEEcCCCCcCcccCCcccCCCCccCCCCchHHHHHHh---------CCeEEEEc
Q 004475 490 DGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLA---------RRFAVLAG 560 (751)
Q Consensus 490 ~~~~i~~~~~~P~~~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~G~~v~~~ 560 (751)
.|.+|+..-..|++... ++..+| ++++||-| |+...|. .....|.. .-|-|++
T Consensus 132 eGL~iHFlhvk~p~~k~-~k~v~P-lLl~HGwP-----------Gsv~EFy----kfIPlLT~p~~hg~~~d~~FEVI~- 193 (469)
T KOG2565|consen 132 EGLKIHFLHVKPPQKKK-KKKVKP-LLLLHGWP-----------GSVREFY----KFIPLLTDPKRHGNESDYAFEVIA- 193 (469)
T ss_pred cceeEEEEEecCCcccc-CCcccc-eEEecCCC-----------chHHHHH----hhhhhhcCccccCCccceeEEEec-
Confidence 46677777777776422 233444 56789954 1111111 11222222 2367888
Q ss_pred CCCCCCCCCCCCCC--chhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEcc
Q 004475 561 PSIPIIGEGDKLPN--DRFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARS 633 (751)
Q Consensus 561 ~~~~~~g~g~~~~~--~~~~~~~~~d~~~~v~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~ 633 (751)
+..+|+|-+... ..+... .++.+++-|--+ +.-++..|-|.-+|..++..+|..+|+.+.+.=+.-
T Consensus 194 --PSlPGygwSd~~sk~GFn~~---a~ArvmrkLMlR--Lg~nkffiqGgDwGSiI~snlasLyPenV~GlHlnm 261 (469)
T KOG2565|consen 194 --PSLPGYGWSDAPSKTGFNAA---ATARVMRKLMLR--LGYNKFFIQGGDWGSIIGSNLASLYPENVLGLHLNM 261 (469)
T ss_pred --cCCCCcccCcCCccCCccHH---HHHHHHHHHHHH--hCcceeEeecCchHHHHHHHHHhhcchhhhHhhhcc
Confidence 445566555433 223222 223444433222 234799999999999999999999999876654433
No 465
>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12.5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.
Probab=93.10 E-value=5.6 Score=39.86 Aligned_cols=65 Identities=12% Similarity=0.056 Sum_probs=43.0
Q ss_pred cceeEEeecCCCCCCCCcccccCCCCcc-----cccceeecCC----CCeEEEEEeecccccccCCceeEEEEEcCCCCe
Q 004475 4 FTGIGIHRLLPDDSLGPEKEVHGYPDGA-----KINFVSWSPD----GKRIAFSVRVDEEDNVSSCKLRVWIADAETGEA 74 (751)
Q Consensus 4 ~~~~~~~~~~~~~~~g~~~~l~~~~~~~-----~~~~p~~SPD----G~~iaf~~~~~~~~~~~~~~~~l~i~~~~~g~~ 74 (751)
.+.|.++||.+ ++..+.-.+|... ....+++... ++.+||+.. .+...|.|+|+.+++.
T Consensus 33 ~pKLv~~Dl~t----~~li~~~~~p~~~~~~~s~lndl~VD~~~~~~~~~~aYItD--------~~~~glIV~dl~~~~s 100 (287)
T PF03022_consen 33 PPKLVAFDLKT----NQLIRRYPFPPDIAPPDSFLNDLVVDVRDGNCDDGFAYITD--------SGGPGLIVYDLATGKS 100 (287)
T ss_dssp --EEEEEETTT----TCEEEEEE--CCCS-TCGGEEEEEEECTTTTS-SEEEEEEE--------TTTCEEEEEETTTTEE
T ss_pred CcEEEEEECCC----CcEEEEEECChHHcccccccceEEEEccCCCCcceEEEEeC--------CCcCcEEEEEccCCcE
Confidence 36899999999 8775544344322 3445666552 237889875 4456999999999999
Q ss_pred eeccCC
Q 004475 75 KPLFES 80 (751)
Q Consensus 75 ~~lt~~ 80 (751)
+++...
T Consensus 101 ~Rv~~~ 106 (287)
T PF03022_consen 101 WRVLHN 106 (287)
T ss_dssp EEEETC
T ss_pred EEEecC
Confidence 888665
No 466
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=93.08 E-value=12 Score=38.48 Aligned_cols=148 Identities=16% Similarity=0.151 Sum_probs=73.6
Q ss_pred eEEeeeeCCCCceEEEEEecCCcccccccCCCceeEEEEeCCCceeeeeccCCCCC---CCCCccCCccCCCceeeeecC
Q 004475 176 VYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAE---DIPVCYNSVREGMRSISWRAD 252 (751)
Q Consensus 176 ~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~---~~~~~~~~~~~~~~~~~~spd 252 (751)
+..++++.+||..+ ++..... .......|+.++.++...+.+. .|..- .....-...+.+.-+++++||
T Consensus 86 D~Egi~~~~~g~~~-is~E~~~------~~~~~p~I~~~~~~G~~~~~~~-vP~~~~~~~~~~~~~~~N~G~E~la~~~d 157 (326)
T PF13449_consen 86 DPEGIAVPPDGSFW-ISSEGGR------TGGIPPRIRRFDLDGRVIRRFP-VPAAFLPDANGTSGRRNNRGFEGLAVSPD 157 (326)
T ss_pred ChhHeEEecCCCEE-EEeCCcc------CCCCCCEEEEECCCCcccceEc-cccccccccCccccccCCCCeEEEEECCC
Confidence 44467776677544 3332210 1111367899998865544441 12110 000011223345568999999
Q ss_pred CCceEEEEEeccCCCCcc---ccCcccceeeccCCCCCCCCceEe-Ee--------eceeEE-EEEecCCceEEEeeee-
Q 004475 253 KPSTLYWVEAQDRGDANV---EVSPRDIIYTQPAEPAEGEKPEIL-HK--------LDLRFS-VSWCDDSLALVNETWY- 318 (751)
Q Consensus 253 G~~~i~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~~~~l-~~--------~~~~~~-~~~spdg~~l~~~~~~- 318 (751)
|+.+++.++..-..+... .....-.|+.++... .+...... .. ....++ +.+-+|++.|+.....
T Consensus 158 G~~l~~~~E~~l~~d~~~~~~~~~~~~ri~~~d~~~-~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~lLvLER~~~ 236 (326)
T PF13449_consen 158 GRTLFAAMESPLKQDGPRANPDNGSPLRILRYDPKT-PGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGRLLVLERDFS 236 (326)
T ss_pred CCEEEEEECccccCCCcccccccCceEEEEEecCCC-CCccceEEEEeCCccccccCCCCceeEEEECCCcEEEEEccCC
Confidence 998555554331111111 111123566666531 11111111 11 234456 8888999977766532
Q ss_pred --cccceeEEEecCCC
Q 004475 319 --KTSQTRTWLVCPGS 332 (751)
Q Consensus 319 --~~~~~~l~~~~~~~ 332 (751)
.....+||.+++..
T Consensus 237 ~~~~~~~ri~~v~l~~ 252 (326)
T PF13449_consen 237 PGTGNYKRIYRVDLSD 252 (326)
T ss_pred CCccceEEEEEEEccc
Confidence 12446899998764
No 467
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=93.05 E-value=13 Score=39.81 Aligned_cols=139 Identities=14% Similarity=0.068 Sum_probs=77.3
Q ss_pred eEEEEEcCCC-CceecCCC---ceEEeeeeCCCC-ceEEEEEecCCcccccccCCCceeEEEEeCCCceeeee--ccCCC
Q 004475 157 AQLVLGSLDG-TAKDFGTP---AVYTAVEPSPDQ-KYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVREL--CDLPP 229 (751)
Q Consensus 157 ~~l~~~~~~G-~~~~lt~~---~~~~~~~~SpDG-~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l--~~~~~ 229 (751)
.+|.++..+| +.+.|... .+...+.||-.. ..|......-. . .+...-+..+|+....+.+++ +..+.
T Consensus 184 aNl~L~~~~~~klEvL~yirTE~dPl~~~Fs~~~~~qi~tVE~s~s----~-~g~~~~d~ciYE~~r~klqrvsvtsipL 258 (545)
T PF11768_consen 184 ANLHLLSCSGGKLEVLSYIRTENDPLDVEFSLNQPYQIHTVEQSIS----V-KGEPSADSCIYECSRNKLQRVSVTSIPL 258 (545)
T ss_pred ccEEEEEecCCcEEEEEEEEecCCcEEEEccCCCCcEEEEEEEecC----C-CCCceeEEEEEEeecCceeEEEEEEEec
Confidence 5788888855 55555322 444567777733 44433322110 0 111233445566555555544 22222
Q ss_pred CCCCCCccCCccCCCceeeeecCCCceEEEEEeccCCCCccccCcccceeeccCCCCCCCCceEeEeeceeEE-EEEecC
Q 004475 230 AEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFS-VSWCDD 308 (751)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~spdG~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~-~~~spd 308 (751)
. ..+...+++|+.+++++-++ .+.|.++|.. ...+..+...-... ++|.|+
T Consensus 259 ~-----------s~v~~ca~sp~E~kLvlGC~-------------DgSiiLyD~~----~~~t~~~ka~~~P~~iaWHp~ 310 (545)
T PF11768_consen 259 P-----------SQVICCARSPSEDKLVLGCE-------------DGSIILYDTT----RGVTLLAKAEFIPTLIAWHPD 310 (545)
T ss_pred C-----------CcceEEecCcccceEEEEec-------------CCeEEEEEcC----CCeeeeeeecccceEEEEcCC
Confidence 2 34568899999999666554 3578888863 22333444444445 899999
Q ss_pred CceEEEeeeecccceeEEEecCCC
Q 004475 309 SLALVNETWYKTSQTRTWLVCPGS 332 (751)
Q Consensus 309 g~~l~~~~~~~~~~~~l~~~~~~~ 332 (751)
|..++..+. .++|...|..-
T Consensus 311 gai~~V~s~----qGelQ~FD~AL 330 (545)
T PF11768_consen 311 GAIFVVGSE----QGELQCFDMAL 330 (545)
T ss_pred CcEEEEEcC----CceEEEEEeec
Confidence 998877663 23555555543
No 468
>COG4287 PqaA PhoPQ-activated pathogenicity-related protein [General function prediction only]
Probab=93.01 E-value=0.8 Score=45.56 Aligned_cols=117 Identities=18% Similarity=0.279 Sum_probs=72.7
Q ss_pred CCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEccC-CCCCCC------CccC--cccccccch--------hhH--H-
Q 004475 598 ADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSG-SYNKTL------TPFG--FQTEFRTLW--------EAT--N- 657 (751)
Q Consensus 598 id~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~-~~d~~~------~~~~--~~~~~~~~~--------~~~--~- 657 (751)
+..+...+.|.|--|..++..|...|. +.++|.+.- ..+... ..++ ++......+ +.+ .
T Consensus 231 ~~Ik~F~VTGaSKRgWttwLTAIaDpr-v~aIvp~v~D~Lni~a~L~hiyrsYGgnwpi~l~pyyaegi~erl~tp~fkq 309 (507)
T COG4287 231 VEIKGFMVTGASKRGWTTWLTAIADPR-VFAIVPFVYDNLNIEAQLLHIYRSYGGNWPIKLAPYYAEGIDERLETPLFKQ 309 (507)
T ss_pred eeeeeEEEeccccchHHHHHHHhcCcc-hhhhhhhHHhhcccHHHHHHHHHhhCCCCCcccchhHhhhHHHhhcCHHHHH
Confidence 556789999999999999999999864 444444331 111000 0000 000000000 001 1
Q ss_pred HHHhcCccccc-----CCCCCCEEEEEcCCCCCCCCChHHHHHHHHHHHhCCCcEEEEEeCCCCCcCC
Q 004475 658 VYIEMSPITHA-----NKIKKPILIIHGEVDDKVGLFPMQAERFFDALKGHGALSRLVLLPFEHHVYA 720 (751)
Q Consensus 658 ~~~~~~~~~~~-----~~~~~P~li~~G~~D~~vp~~~~~~~~~~~~l~~~~~~~~~~~~~~~~H~~~ 720 (751)
...-.+|+... .++..|-+|+.+..|...+ ++.+.-+++.|... .-+.+.|+..|...
T Consensus 310 L~~IiDPlay~~try~~RLalpKyivnaSgDdff~--pDsa~lYyd~LPG~---kaLrmvPN~~H~~~ 372 (507)
T COG4287 310 LLEIIDPLAYRNTRYQLRLALPKYIVNASGDDFFV--PDSANLYYDDLPGE---KALRMVPNDPHNLI 372 (507)
T ss_pred HHHhhcHHHHhhhhhhhhccccceeecccCCcccC--CCccceeeccCCCc---eeeeeCCCCcchhh
Confidence 11222444433 5677999999999999887 89998899888743 46999999999864
No 469
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=92.97 E-value=10 Score=40.86 Aligned_cols=59 Identities=17% Similarity=0.148 Sum_probs=39.9
Q ss_pred cccceeecCCCCeEEEEEeecccccccCCceeEEEEEcCCCCeeec--cCCCCccccceeeeeEEecCCcEEEEe
Q 004475 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPL--FESPDICLNAVFGSFVWVNNSTLLIFT 104 (751)
Q Consensus 32 ~~~~p~~SPDG~~iaf~~~~~~~~~~~~~~~~l~i~~~~~g~~~~l--t~~~~~~~~~~~~~~~wspDg~~l~~~ 104 (751)
-+....|-| |+-..... .+...+..+++++++.... ..+.. ..+.+.+++|+.+.++.+
T Consensus 102 AifDl~wap-ge~~lVsa---------sGDsT~r~Wdvk~s~l~G~~~~~GH~----~SvkS~cf~~~n~~vF~t 162 (720)
T KOG0321|consen 102 AIFDLKWAP-GESLLVSA---------SGDSTIRPWDVKTSRLVGGRLNLGHT----GSVKSECFMPTNPAVFCT 162 (720)
T ss_pred eeEeeccCC-CceeEEEc---------cCCceeeeeeeccceeecceeecccc----cccchhhhccCCCcceee
Confidence 467888999 76554432 5667888888888775544 22222 246788999999877766
No 470
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=92.96 E-value=5.4 Score=43.93 Aligned_cols=51 Identities=24% Similarity=0.372 Sum_probs=33.5
Q ss_pred cccceeecCCCCeEEEEEeecccccccCCceeEEEEEcCCCCeeeccCCCCccccceeeeeEEecCC
Q 004475 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNS 98 (751)
Q Consensus 32 ~~~~p~~SPDG~~iaf~~~~~~~~~~~~~~~~l~i~~~~~g~~~~lt~~~~~~~~~~~~~~~wspDg 98 (751)
.-..+-|||.| .|||. ...-|.++|..+-+..+....+. ..+..+.|+|--
T Consensus 17 N~~A~Dw~~~G-LiAyg-----------shslV~VVDs~s~q~iqsie~h~----s~V~~VrWap~~ 67 (1062)
T KOG1912|consen 17 NRNAADWSPSG-LIAYG-----------SHSLVSVVDSRSLQLIQSIELHQ----SAVTSVRWAPAP 67 (1062)
T ss_pred cccccccCccc-eEEEe-----------cCceEEEEehhhhhhhhccccCc----cceeEEEeccCC
Confidence 45677899999 99994 44788899865544333322222 246788998754
No 471
>KOG2521 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.95 E-value=3.3 Score=42.11 Aligned_cols=68 Identities=16% Similarity=0.131 Sum_probs=59.4
Q ss_pred CCCEEEEEcCCCCCCCCChHHHHHHHHHHHhCCCcEEEEEeCCCCCcCCccccHHHHHHHHHHHHHHHhc
Q 004475 672 KKPILIIHGEVDDKVGLFPMQAERFFDALKGHGALSRLVLLPFEHHVYAARENVMHVIWETDRWLQKYCL 741 (751)
Q Consensus 672 ~~P~li~~G~~D~~vp~~~~~~~~~~~~l~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~fl~~~l~ 741 (751)
..+.+.+.+..|.++| ..+.+++.+..+..|..+...-+.++.|..........+.....+|+.....
T Consensus 225 ~~~~ly~~s~~d~v~~--~~~ie~f~~~~~~~g~~v~s~~~~ds~H~~h~r~~p~~y~~~~~~Fl~~~~~ 292 (350)
T KOG2521|consen 225 PWNQLYLYSDNDDVLP--ADEIEKFIALRREKGVNVKSVKFKDSEHVAHFRSFPKTYLKKCSEFLRSVIS 292 (350)
T ss_pred cccceeecCCcccccc--HHHHHHHHHHHHhcCceEEEeeccCccceeeeccCcHHHHHHHHHHHHhccc
Confidence 3567777799999998 8999999888899999999999999999987777788999999999998754
No 472
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.65 E-value=17 Score=39.19 Aligned_cols=201 Identities=12% Similarity=0.143 Sum_probs=109.8
Q ss_pred CcceeEEeecCCCCCCCCcccccCCCCcccccceeecCCCCeEEEEEeecccccccCCceeEEEEEcCCCCe-eeccCCC
Q 004475 3 FFTGIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEA-KPLFESP 81 (751)
Q Consensus 3 ~~~~~~~~~~~~~~~~g~~~~l~~~~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~~~~~l~i~~~~~g~~-~~lt~~~ 81 (751)
|..++-+||-.+ -...+--.+.+ ..++...|=+--.||+.- ....+|.+.+..+++. ++...++
T Consensus 33 ynG~V~IWnyet----qtmVksfeV~~-~PvRa~kfiaRknWiv~G----------sDD~~IrVfnynt~ekV~~FeAH~ 97 (794)
T KOG0276|consen 33 YNGDVQIWNYET----QTMVKSFEVSE-VPVRAAKFIARKNWIVTG----------SDDMQIRVFNYNTGEKVKTFEAHS 97 (794)
T ss_pred ecCeeEEEeccc----ceeeeeeeecc-cchhhheeeeccceEEEe----------cCCceEEEEecccceeeEEeeccc
Confidence 556777888766 32222111122 246777777777787763 4456777778777764 3332222
Q ss_pred CccccceeeeeEEecCCcEEEEeecCCCCCCCCCCCCCCCCceeeccccccccchhhhhccCCccchhhhhhheeeEEEE
Q 004475 82 DICLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVL 161 (751)
Q Consensus 82 ~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 161 (751)
. .++.++-.|.--+++..+.+ ..|.+
T Consensus 98 D-----yIR~iavHPt~P~vLtsSDD-------------------------------------------------m~iKl 123 (794)
T KOG0276|consen 98 D-----YIRSIAVHPTLPYVLTSSDD-------------------------------------------------MTIKL 123 (794)
T ss_pred c-----ceeeeeecCCCCeEEecCCc-------------------------------------------------cEEEE
Confidence 2 35677777877777665432 23444
Q ss_pred EcCCC--Ccee-cCCC-ceEEeeeeCCC-CceEEEEEecCCcccccccCCCceeEEEEeCCCceeeeeccCCCCCCCCCc
Q 004475 162 GSLDG--TAKD-FGTP-AVYTAVEPSPD-QKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVC 236 (751)
Q Consensus 162 ~~~~G--~~~~-lt~~-~~~~~~~~SpD-G~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~ 236 (751)
++-++ ..++ ...+ ..+..++|.|. ...++-.+.++ .+-+|.+....+- ..
T Consensus 124 W~we~~wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~sLDr-------------TVKVWslgs~~~n------------fT 178 (794)
T KOG0276|consen 124 WDWENEWACEQTFEGHEHYVMQVAFNPKDPNTFASASLDR-------------TVKVWSLGSPHPN------------FT 178 (794)
T ss_pred eeccCceeeeeEEcCcceEEEEEEecCCCccceeeeeccc-------------cEEEEEcCCCCCc------------ee
Confidence 44433 3333 3434 66778999994 45555554443 4667777543221 23
Q ss_pred cCCccCCCceeeeecCCCceEEEEEeccCCCCccccCcccceeeccCCCCCCCCceEeEeeceeEE-EEEecCCc
Q 004475 237 YNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFS-VSWCDDSL 310 (751)
Q Consensus 237 ~~~~~~~~~~~~~spdG~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~-~~~spdg~ 310 (751)
+.....|+..+.+-+-|.+ -+.++..|+ ..+-++|... ....+.|..+...++ +.|.|.=-
T Consensus 179 l~gHekGVN~Vdyy~~gdk-pylIsgaDD----------~tiKvWDyQt--k~CV~TLeGHt~Nvs~v~fhp~lp 240 (794)
T KOG0276|consen 179 LEGHEKGVNCVDYYTGGDK-PYLISGADD----------LTIKVWDYQT--KSCVQTLEGHTNNVSFVFFHPELP 240 (794)
T ss_pred eeccccCcceEEeccCCCc-ceEEecCCC----------ceEEEeecch--HHHHHHhhcccccceEEEecCCCc
Confidence 3445567778888888877 556553322 2455555531 223344444444444 44444433
No 473
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=92.42 E-value=5.7 Score=42.77 Aligned_cols=130 Identities=9% Similarity=0.093 Sum_probs=72.8
Q ss_pred eEEEEEcC-CCCceec-----------C-CC-ceEEeeeeCCCCceEEEEEecCCcccccccCCCceeEEEEeCCCce-e
Q 004475 157 AQLVLGSL-DGTAKDF-----------G-TP-AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKL-V 221 (751)
Q Consensus 157 ~~l~~~~~-~G~~~~l-----------t-~~-~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~-~ 221 (751)
..|+++|+ +|..+.+ . .+ ..+.+++-.+.| .+++. +....+|.+||..+++ .
T Consensus 140 ~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~-t~ivs------------Ggtek~lr~wDprt~~ki 206 (735)
T KOG0308|consen 140 RKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTG-TIIVS------------GGTEKDLRLWDPRTCKKI 206 (735)
T ss_pred ccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCCcc-eEEEe------------cCcccceEEeccccccce
Confidence 47888888 5632211 1 11 445566666666 33332 2224679999998653 3
Q ss_pred eeeccCCCCCCCCCccCCccCCCceeeeecCCCceEEEEEeccCCCCccccCcccceeeccCCCCCCCCceEeE--eece
Q 004475 222 RELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILH--KLDL 299 (751)
Q Consensus 222 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~spdG~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~--~~~~ 299 (751)
..| .....++|.+-.++||.+ ++-++ ..+.|.++++. .+.-..+ ....
T Consensus 207 mkL-------------rGHTdNVr~ll~~dDGt~-~ls~s------------SDgtIrlWdLg----qQrCl~T~~vH~e 256 (735)
T KOG0308|consen 207 MKL-------------RGHTDNVRVLLVNDDGTR-LLSAS------------SDGTIRLWDLG----QQRCLATYIVHKE 256 (735)
T ss_pred eee-------------eccccceEEEEEcCCCCe-EeecC------------CCceEEeeecc----ccceeeeEEeccC
Confidence 333 344567889999999999 55544 33678888883 3222211 1111
Q ss_pred eEE-EEEecCCceEEEeeeecccceeEEEecCCCC
Q 004475 300 RFS-VSWCDDSLALVNETWYKTSQTRTWLVCPGSK 333 (751)
Q Consensus 300 ~~~-~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~ 333 (751)
.+- ..-+|+=+.+|++. ....|++.++.+.
T Consensus 257 ~VWaL~~~~sf~~vYsG~----rd~~i~~Tdl~n~ 287 (735)
T KOG0308|consen 257 GVWALQSSPSFTHVYSGG----RDGNIYRTDLRNP 287 (735)
T ss_pred ceEEEeeCCCcceEEecC----CCCcEEecccCCc
Confidence 122 33345555555533 3457888887764
No 474
>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4.3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.
Probab=92.35 E-value=1.3 Score=35.04 Aligned_cols=43 Identities=19% Similarity=0.132 Sum_probs=31.0
Q ss_pred hheeeEEEEEcC-CCCceecCCC-ceEEeeeeCCCCceEEEEEec
Q 004475 153 YYTTAQLVLGSL-DGTAKDFGTP-AVYTAVEPSPDQKYVLITSMH 195 (751)
Q Consensus 153 ~~~~~~l~~~~~-~G~~~~lt~~-~~~~~~~~SpDG~~i~~~~~~ 195 (751)
....+.|+.+|. +++.+.|.+. ....+++.|||+++|+++...
T Consensus 33 ~~~~GRll~ydp~t~~~~vl~~~L~fpNGVals~d~~~vlv~Et~ 77 (89)
T PF03088_consen 33 GRPTGRLLRYDPSTKETTVLLDGLYFPNGVALSPDESFVLVAETG 77 (89)
T ss_dssp T---EEEEEEETTTTEEEEEEEEESSEEEEEE-TTSSEEEEEEGG
T ss_pred CCCCcCEEEEECCCCeEEEehhCCCccCeEEEcCCCCEEEEEecc
Confidence 335689999999 6677666665 556689999999999998544
No 475
>KOG1520 consensus Predicted alkaloid synthase/Surface mucin Hemomucin [General function prediction only]
Probab=92.30 E-value=4.7 Score=40.94 Aligned_cols=119 Identities=17% Similarity=0.128 Sum_probs=69.9
Q ss_pred cceeecCCCCeEEEEEeecccccccCCceeEEEEEcCCCCeeeccCCCCcc-ccceeeeeEEecCCcEEEEeecCCCCCC
Q 004475 34 NFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDIC-LNAVFGSFVWVNNSTLLIFTIPSSRRDP 112 (751)
Q Consensus 34 ~~p~~SPDG~~iaf~~~~~~~~~~~~~~~~l~i~~~~~g~~~~lt~~~~~~-~~~~~~~~~wspDg~~l~~~~~~~~~~~ 112 (751)
-..+|...|..|+.+ +..--||.++.+++..+.++...... .. ..+.+..+|+| .|+|+....+-..
T Consensus 118 LGl~f~~~ggdL~Va----------DAYlGL~~V~p~g~~a~~l~~~~~G~~~k-f~N~ldI~~~g-~vyFTDSSsk~~~ 185 (376)
T KOG1520|consen 118 LGIRFDKKGGDLYVA----------DAYLGLLKVGPEGGLAELLADEAEGKPFK-FLNDLDIDPEG-VVYFTDSSSKYDR 185 (376)
T ss_pred ceEEeccCCCeEEEE----------ecceeeEEECCCCCcceeccccccCeeee-ecCceeEcCCC-eEEEeccccccch
Confidence 345677777655443 55577889999999988887654321 11 23467778855 5888733211110
Q ss_pred CCCCCCCCCCceeeccccccccchhhhhccCCccchhhhhhheeeEEEEEcC-CCCceecCCC-ceEEeeeeCCCCceEE
Q 004475 113 PKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DGTAKDFGTP-AVYTAVEPSPDQKYVL 190 (751)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~G~~~~lt~~-~~~~~~~~SpDG~~i~ 190 (751)
|.+. ...+.....+.+..+|. +...+.|.+. .-...++.|||+.+++
T Consensus 186 -----------------------rd~~--------~a~l~g~~~GRl~~YD~~tK~~~VLld~L~F~NGlaLS~d~sfvl 234 (376)
T KOG1520|consen 186 -----------------------RDFV--------FAALEGDPTGRLFRYDPSTKVTKVLLDGLYFPNGLALSPDGSFVL 234 (376)
T ss_pred -----------------------hheE--------EeeecCCCccceEEecCcccchhhhhhcccccccccCCCCCCEEE
Confidence 0000 00111113357888888 4455555555 4445799999999999
Q ss_pred EEEec
Q 004475 191 ITSMH 195 (751)
Q Consensus 191 ~~~~~ 195 (751)
+....
T Consensus 235 ~~Et~ 239 (376)
T KOG1520|consen 235 VAETT 239 (376)
T ss_pred EEeec
Confidence 97543
No 476
>KOG1282 consensus Serine carboxypeptidases (lysosomal cathepsin A) [Posttranslational modification, protein turnover, chaperones; Amino acid transport and metabolism]
Probab=92.26 E-value=1.1 Score=47.41 Aligned_cols=148 Identities=11% Similarity=0.045 Sum_probs=78.7
Q ss_pred EEEEcCCCceEEEEEEcCCCCCCCCCCCccEEEEEcCCCCcCcccCCcc-cCCCCccCCCCchHHH---HHHhCCeEEEE
Q 004475 484 IKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQV-RGSPNEFSGMTPTSSL---IFLARRFAVLA 559 (751)
Q Consensus 484 i~~~~~~~~~i~~~~~~P~~~~~~~~~~~P~vv~~HGg~~~~~~~~~~~-~~~~~~~~~~~~~~~~---~~~~~G~~v~~ 559 (751)
+.+....+..+..|++.... .+. ..|+||++-|||.++.=. |.+ .-+|-....-+..+.. .+- +--.++.
T Consensus 49 v~v~~~~~~~LFYwf~eS~~-~P~---~dPlvLWLnGGPGCSSl~-G~~~E~GPf~v~~~G~tL~~N~ySWn-k~aNiLf 122 (454)
T KOG1282|consen 49 VTVNESEGRQLFYWFFESEN-NPE---TDPLVLWLNGGPGCSSLG-GLFEENGPFRVKYNGKTLYLNPYSWN-KEANILF 122 (454)
T ss_pred EECCCCCCceEEEEEEEccC-CCC---CCCEEEEeCCCCCccchh-hhhhhcCCeEEcCCCCcceeCCcccc-ccccEEE
Confidence 44444456667777775442 222 369999999998665322 211 1122111110000000 011 1122333
Q ss_pred cCCCCCCCCCCCCCCc---hhHHHHHHHHHHHH-HHHHHcCCCCCCcEEEEEeChHHHHHHHHHHh----C-----C-Cc
Q 004475 560 GPSIPIIGEGDKLPND---RFVEQLVSSAEAAV-EEVVRRGVADPSRIAVGGHSYGAFMTAHLLAH----A-----P-HL 625 (751)
Q Consensus 560 ~~~~~~~g~g~~~~~~---~~~~~~~~d~~~~v-~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~----~-----p-~~ 625 (751)
.+.+-+.|++-+.... .-....++|...++ +|+.+.+..-.+.+.|.|-|++|+....+|.. + | --
T Consensus 123 Ld~PvGvGFSYs~~~~~~~~~D~~~A~d~~~FL~~wf~kfPey~~~~fyI~GESYAG~YVP~La~~I~~~N~~~~~~~iN 202 (454)
T KOG1282|consen 123 LDQPVGVGFSYSNTSSDYKTGDDGTAKDNYEFLQKWFEKFPEYKSNDFYIAGESYAGHYVPALAQEILKGNKKCCKPNIN 202 (454)
T ss_pred EecCCcCCccccCCCCcCcCCcHHHHHHHHHHHHHHHHhChhhcCCCeEEecccccceehHHHHHHHHhccccccCCccc
Confidence 3444455543322211 11234455555555 77777777777899999999999777666542 2 1 14
Q ss_pred eeEEEEccCCCC
Q 004475 626 FCCGIARSGSYN 637 (751)
Q Consensus 626 ~~~~v~~~~~~d 637 (751)
++++++..|+.|
T Consensus 203 LkG~~IGNg~td 214 (454)
T KOG1282|consen 203 LKGYAIGNGLTD 214 (454)
T ss_pred ceEEEecCcccC
Confidence 789998888765
No 477
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=92.23 E-value=0.51 Score=50.93 Aligned_cols=79 Identities=16% Similarity=0.104 Sum_probs=49.2
Q ss_pred eeEEeecCCCCCCCCcc-cccCCCCcccccceeecCCCCeEEEEEeecccccccCCceeEEEEEcCCCCeeeccCCCCcc
Q 004475 6 GIGIHRLLPDDSLGPEK-EVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDIC 84 (751)
Q Consensus 6 ~~~~~~~~~~~~~g~~~-~l~~~~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~~~~~l~i~~~~~g~~~~lt~~~~~~ 84 (751)
-|++|||.+ ++.. .|++. ...+....|+|=|.+.|-- ....++-++|...........+...
T Consensus 93 tiK~wDlee----Ak~vrtLtgh--~~~~~sv~f~P~~~~~a~g----------Stdtd~~iwD~Rk~Gc~~~~~s~~~- 155 (825)
T KOG0267|consen 93 TIKVWDLEE----AKIVRTLTGH--LLNITSVDFHPYGEFFASG----------STDTDLKIWDIRKKGCSHTYKSHTR- 155 (825)
T ss_pred ceeeeehhh----hhhhhhhhcc--ccCcceeeeccceEEeccc----------cccccceehhhhccCceeeecCCcc-
Confidence 589999987 6644 45432 1246777899988776331 3446677777653332222222111
Q ss_pred ccceeeeeEEecCCcEEEEe
Q 004475 85 LNAVFGSFVWVNNSTLLIFT 104 (751)
Q Consensus 85 ~~~~~~~~~wspDg~~l~~~ 104 (751)
.+..++++|||++++-.
T Consensus 156 ---vv~~l~lsP~Gr~v~~g 172 (825)
T KOG0267|consen 156 ---VVDVLRLSPDGRWVASG 172 (825)
T ss_pred ---eeEEEeecCCCceeecc
Confidence 36688999999998865
No 478
>PF02450 LCAT: Lecithin:cholesterol acyltransferase; InterPro: IPR003386 Lecithin:cholesterol acyltransferase (LACT), also known as phosphatidylcholine-sterol acyltransferase (2.3.1.43 from EC), is involved in extracellular metabolism of plasma lipoproteins, including cholesterol. It esterifies the free cholesterol transported in plasma lipoproteins, and is activated by apolipoprotein A-I. Defects in LACT cause Norum and Fish eye diseases. This family also includes phospholipid:diacylglycerol acyltransferase (PDAT)(2.3.1.158 from EC), which is involved in triacylglycerol formation by an acyl-CoA independent pathway. The enzyme specifically transfers acyl groups from the sn-2 position of a phospholipid to diacylglycerol, thus forming an sn-1-lysophospholipid [].; GO: 0008374 O-acyltransferase activity, 0006629 lipid metabolic process
Probab=92.15 E-value=0.33 Score=51.16 Aligned_cols=82 Identities=12% Similarity=0.138 Sum_probs=54.0
Q ss_pred hHHHHHHhCCeEE----EEcCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHH
Q 004475 545 TSSLIFLARRFAV----LAGPSIPIIGEGDKLPNDRFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLA 620 (751)
Q Consensus 545 ~~~~~~~~~G~~v----~~~~~~~~~g~g~~~~~~~~~~~~~~d~~~~v~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~ 620 (751)
.+...|.+.||.. ++.+| |.+- ... ........+...|+.+.+.. ..+|.|+||||||.++..++.
T Consensus 69 ~li~~L~~~GY~~~~~l~~~pY-DWR~-----~~~-~~~~~~~~lk~~ie~~~~~~---~~kv~li~HSmGgl~~~~fl~ 138 (389)
T PF02450_consen 69 KLIENLEKLGYDRGKDLFAAPY-DWRL-----SPA-ERDEYFTKLKQLIEEAYKKN---GKKVVLIAHSMGGLVARYFLQ 138 (389)
T ss_pred HHHHHHHhcCcccCCEEEEEee-chhh-----chh-hHHHHHHHHHHHHHHHHHhc---CCcEEEEEeCCCchHHHHHHH
Confidence 4566777777764 33322 3321 111 22344566677777776543 479999999999999999887
Q ss_pred hCCC------ceeEEEEccCCC
Q 004475 621 HAPH------LFCCGIARSGSY 636 (751)
Q Consensus 621 ~~p~------~~~~~v~~~~~~ 636 (751)
..+. .+++.|.+++.+
T Consensus 139 ~~~~~~W~~~~i~~~i~i~~p~ 160 (389)
T PF02450_consen 139 WMPQEEWKDKYIKRFISIGTPF 160 (389)
T ss_pred hccchhhHHhhhhEEEEeCCCC
Confidence 7643 478888888764
No 479
>PF06259 Abhydrolase_8: Alpha/beta hydrolase; InterPro: IPR010427 This is a family of uncharacterised proteins found in Actinobacteria. Computational analysis suggests that they may belong to the alpha-beta hydrolase family of enzymes, as they are predicted to form the core secondary structures and catalytic machinery common to these proteins []. Genomic context suggests that they may function as lipases, controlling the concentration of their putative phospholipid substrates.
Probab=92.12 E-value=1.3 Score=40.42 Aligned_cols=58 Identities=10% Similarity=0.080 Sum_probs=41.9
Q ss_pred chhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEcc
Q 004475 575 DRFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARS 633 (751)
Q Consensus 575 ~~~~~~~~~d~~~~v~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~ 633 (751)
..+......++...++-|+... -...++.++|||||..++..++...+-.+..+|++.
T Consensus 84 ~~~A~~ga~~L~~f~~gl~a~~-~~~~~~tv~GHSYGS~v~G~A~~~~~~~vddvv~~G 141 (177)
T PF06259_consen 84 PGYARAGAPRLARFLDGLRATH-GPDAHLTVVGHSYGSTVVGLAAQQGGLRVDDVVLVG 141 (177)
T ss_pred chHHHHHHHHHHHHHHHhhhhc-CCCCCEEEEEecchhHHHHHHhhhCCCCcccEEEEC
Confidence 3455666777777777777654 345699999999999999988877445555555544
No 480
>cd00519 Lipase_3 Lipase (class 3). Lipases are esterases that can hydrolyze long-chain acyl-triglycerides into di- and monoglycerides, glycerol, and free fatty acids at a water/lipid interface. A typical feature of lipases is "interfacial activation," the process of becoming active at the lipid/water interface, although several examples of lipases have been identified that do not undergo interfacial activation . The active site of a lipase contains a catalytic triad consisting of Ser - His - Asp/Glu, but unlike most serine proteases, the active site is buried inside the structure. A "lid" or "flap" covers the active site, making it inaccessible to solvent and substrates. The lid opens during the process of interfacial activation, allowing the lipid substrate access to the active site.
Probab=92.10 E-value=0.37 Score=46.73 Aligned_cols=40 Identities=20% Similarity=0.303 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHh
Q 004475 580 QLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAH 621 (751)
Q Consensus 580 ~~~~d~~~~v~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~ 621 (751)
...+++...++.++++. ...+|.++|||+||.+|..++..
T Consensus 109 ~~~~~~~~~~~~~~~~~--p~~~i~vtGHSLGGaiA~l~a~~ 148 (229)
T cd00519 109 SLYNQVLPELKSALKQY--PDYKIIVTGHSLGGALASLLALD 148 (229)
T ss_pred HHHHHHHHHHHHHHhhC--CCceEEEEccCHHHHHHHHHHHH
Confidence 34455555555555442 24689999999999999988875
No 481
>PLN02454 triacylglycerol lipase
Probab=92.06 E-value=0.32 Score=50.29 Aligned_cols=42 Identities=24% Similarity=0.251 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHh
Q 004475 580 QLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAH 621 (751)
Q Consensus 580 ~~~~d~~~~v~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~ 621 (751)
...+++...|+.+.+...-..-+|.++|||+||.+|+.+|..
T Consensus 207 S~r~qvl~~V~~l~~~Yp~~~~sI~vTGHSLGGALAtLaA~d 248 (414)
T PLN02454 207 SARSQLLAKIKELLERYKDEKLSIVLTGHSLGASLATLAAFD 248 (414)
T ss_pred HHHHHHHHHHHHHHHhCCCCCceEEEEecCHHHHHHHHHHHH
Confidence 345666677777766542122359999999999999999854
No 482
>PF11288 DUF3089: Protein of unknown function (DUF3089); InterPro: IPR021440 This family of proteins has no known function.
Probab=91.90 E-value=0.43 Score=44.39 Aligned_cols=45 Identities=20% Similarity=0.210 Sum_probs=36.0
Q ss_pred hHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhC
Q 004475 577 FVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHA 622 (751)
Q Consensus 577 ~~~~~~~d~~~~v~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~ 622 (751)
.....+.|+.++.++-.++.. +...|+|.|||+|+.+...++...
T Consensus 72 a~~~ay~DV~~AF~~yL~~~n-~GRPfILaGHSQGs~~l~~LL~e~ 116 (207)
T PF11288_consen 72 AFDLAYSDVRAAFDYYLANYN-NGRPFILAGHSQGSMHLLRLLKEE 116 (207)
T ss_pred HHHhhHHHHHHHHHHHHHhcC-CCCCEEEEEeChHHHHHHHHHHHH
Confidence 345568999999988877643 335899999999999999998764
No 483
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=91.84 E-value=11 Score=34.96 Aligned_cols=137 Identities=7% Similarity=0.007 Sum_probs=69.4
Q ss_pred eEEEEEcC-CCC-ceecCCC-ceE-EeeeeCCCCceEEEEEecCCcccccccCCCceeEEEEeCCCceeeeeccCCCCCC
Q 004475 157 AQLVLGSL-DGT-AKDFGTP-AVY-TAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAED 232 (751)
Q Consensus 157 ~~l~~~~~-~G~-~~~lt~~-~~~-~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~ 232 (751)
..||+.|- .|+ ..-+..+ +.+ .-+.|+ |-.++--+. ...|..||+.-....+........+
T Consensus 163 c~iy~tdc~~g~~~~a~sghtghilalyswn--~~m~~sgsq-------------dktirfwdlrv~~~v~~l~~~~~~~ 227 (350)
T KOG0641|consen 163 CKIYITDCGRGQGFHALSGHTGHILALYSWN--GAMFASGSQ-------------DKTIRFWDLRVNSCVNTLDNDFHDG 227 (350)
T ss_pred ceEEEeecCCCCcceeecCCcccEEEEEEec--CcEEEccCC-------------CceEEEEeeeccceeeeccCcccCC
Confidence 57888887 663 3334333 333 345565 333322211 3456778776433222222221111
Q ss_pred CCCccCCccCCCceeeeecCCCceEEEEEeccCCCCccccCcccceeeccCCCCCCCCc-eEeEeeceeEE-EEEecCCc
Q 004475 233 IPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKP-EILHKLDLRFS-VSWCDDSL 310 (751)
Q Consensus 233 ~~~~~~~~~~~~~~~~~spdG~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~-~~l~~~~~~~~-~~~spdg~ 310 (751)
.. +...+..++..|.|+. ++--. ....-.++|+. ++.+ +........+. +.|||..-
T Consensus 228 gl-----essavaav~vdpsgrl-l~sg~------------~dssc~lydir---g~r~iq~f~phsadir~vrfsp~a~ 286 (350)
T KOG0641|consen 228 GL-----ESSAVAAVAVDPSGRL-LASGH------------ADSSCMLYDIR---GGRMIQRFHPHSADIRCVRFSPGAH 286 (350)
T ss_pred Cc-----ccceeEEEEECCCcce-eeecc------------CCCceEEEEee---CCceeeeeCCCccceeEEEeCCCce
Confidence 10 0112446788999985 33311 12344555653 3332 33334455677 99999888
Q ss_pred eEEEeeeecccceeEEEecCCCC
Q 004475 311 ALVNETWYKTSQTRTWLVCPGSK 333 (751)
Q Consensus 311 ~l~~~~~~~~~~~~l~~~~~~~~ 333 (751)
+++..+ ....|-+.|+++.
T Consensus 287 yllt~s----yd~~ikltdlqgd 305 (350)
T KOG0641|consen 287 YLLTCS----YDMKIKLTDLQGD 305 (350)
T ss_pred EEEEec----ccceEEEeecccc
Confidence 776544 2346777777774
No 484
>KOG3724 consensus Negative regulator of COPII vesicle formation [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.72 E-value=0.54 Score=51.67 Aligned_cols=60 Identities=15% Similarity=0.123 Sum_probs=38.1
Q ss_pred hHHHHHHHHHHHHHHHHHcC----CCC---CCcEEEEEeChHHHHHHHHHHhC---CCceeEEEEccCCC
Q 004475 577 FVEQLVSSAEAAVEEVVRRG----VAD---PSRIAVGGHSYGAFMTAHLLAHA---PHLFCCGIARSGSY 636 (751)
Q Consensus 577 ~~~~~~~d~~~~v~~l~~~~----~id---~~~i~l~G~S~GG~~a~~~a~~~---p~~~~~~v~~~~~~ 636 (751)
...+..|-+.+|++++.+.. ..+ |..|+++||||||.+|..++..- ++.+.-++..+.+.
T Consensus 151 ~l~dQtEYV~dAIk~ILslYr~~~e~~~p~P~sVILVGHSMGGiVAra~~tlkn~~~~sVntIITlssPH 220 (973)
T KOG3724|consen 151 ILLDQTEYVNDAIKYILSLYRGEREYASPLPHSVILVGHSMGGIVARATLTLKNEVQGSVNTIITLSSPH 220 (973)
T ss_pred hHHHHHHHHHHHHHHHHHHhhcccccCCCCCceEEEEeccchhHHHHHHHhhhhhccchhhhhhhhcCcc
Confidence 34455666777777776632 223 66799999999999997666542 23344444455443
No 485
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=91.69 E-value=0.76 Score=49.69 Aligned_cols=56 Identities=13% Similarity=0.093 Sum_probs=37.2
Q ss_pred cccceeecCCCCeEEEEEeecccccccCCceeEEEEEcCCCC-eeeccCCCCccccceeeeeEEecCCcEEE
Q 004475 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGE-AKPLFESPDICLNAVFGSFVWVNNSTLLI 102 (751)
Q Consensus 32 ~~~~p~~SPDG~~iaf~~~~~~~~~~~~~~~~l~i~~~~~g~-~~~lt~~~~~~~~~~~~~~~wspDg~~l~ 102 (751)
.+...+|+++-..|+-- ...+.|.++|++.+. .+.||-+... +..+.|+|=|.+.+
T Consensus 72 pIeSl~f~~~E~Llaag----------sasgtiK~wDleeAk~vrtLtgh~~~-----~~sv~f~P~~~~~a 128 (825)
T KOG0267|consen 72 PIESLTFDTSERLLAAG----------SASGTIKVWDLEEAKIVRTLTGHLLN-----ITSVDFHPYGEFFA 128 (825)
T ss_pred cceeeecCcchhhhccc----------ccCCceeeeehhhhhhhhhhhccccC-----cceeeeccceEEec
Confidence 57778888887777663 344678888888766 4555433321 35667999998764
No 486
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=91.69 E-value=24 Score=38.77 Aligned_cols=22 Identities=23% Similarity=0.561 Sum_probs=18.7
Q ss_pred CCCcccccceeecCCCCeEEEE
Q 004475 27 YPDGAKINFVSWSPDGKRIAFS 48 (751)
Q Consensus 27 ~~~~~~~~~p~~SPDG~~iaf~ 48 (751)
+|+........|.-..-+||.-
T Consensus 11 iPnnvkL~c~~WNke~gyIAcg 32 (1189)
T KOG2041|consen 11 IPNNVKLHCAEWNKESGYIACG 32 (1189)
T ss_pred CCCCceEEEEEEcccCCeEEec
Confidence 6777778899999999999994
No 487
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.63 E-value=23 Score=38.34 Aligned_cols=193 Identities=12% Similarity=0.177 Sum_probs=110.9
Q ss_pred cccceeecCCCCeEEEEEeecccccccCCceeEEEEEcCCCCe---eeccCCCCccccceeeeeEEecCCcEEEEeecCC
Q 004475 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEA---KPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSS 108 (751)
Q Consensus 32 ~~~~p~~SPDG~~iaf~~~~~~~~~~~~~~~~l~i~~~~~g~~---~~lt~~~~~~~~~~~~~~~wspDg~~l~~~~~~~ 108 (751)
.+...-++|--.|+.-... .+..+|| +-++... -.++..+ ++...|-+--++|+..+.+
T Consensus 15 RVKsVd~HPtePw~la~Ly--------nG~V~IW--nyetqtmVksfeV~~~P-------vRa~kfiaRknWiv~GsDD- 76 (794)
T KOG0276|consen 15 RVKSVDFHPTEPWILAALY--------NGDVQIW--NYETQTMVKSFEVSEVP-------VRAAKFIARKNWIVTGSDD- 76 (794)
T ss_pred ceeeeecCCCCceEEEeee--------cCeeEEE--ecccceeeeeeeecccc-------hhhheeeeccceEEEecCC-
Confidence 5778899999999877543 3445555 4444432 2233222 4556777777788877543
Q ss_pred CCCCCCCCCCCCCCceeeccccccccchhhhhccCCccchhhhhhheeeEEEEEcC-CC-CceecCCC-ceEEeeeeCCC
Q 004475 109 RRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DG-TAKDFGTP-AVYTAVEPSPD 185 (751)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~G-~~~~lt~~-~~~~~~~~SpD 185 (751)
.+|.+++. ++ +++....+ ..++.++..|.
T Consensus 77 ------------------------------------------------~~IrVfnynt~ekV~~FeAH~DyIR~iavHPt 108 (794)
T KOG0276|consen 77 ------------------------------------------------MQIRVFNYNTGEKVKTFEAHSDYIRSIAVHPT 108 (794)
T ss_pred ------------------------------------------------ceEEEEecccceeeEEeeccccceeeeeecCC
Confidence 47777787 66 66666666 77889999999
Q ss_pred CceEEEEEecCCcccccccCCCceeEEEEeCCCceeeeeccCCCCCCCCCccCCccCCCceeeeecCCCceEEEEEeccC
Q 004475 186 QKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDR 265 (751)
Q Consensus 186 G~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~spdG~~~i~~~~~~~~ 265 (751)
--+++.++++. .-.+|-|+-.-...+. |......+-+++|.|....-.+-++
T Consensus 109 ~P~vLtsSDDm-----------~iKlW~we~~wa~~qt-------------feGH~HyVMqv~fnPkD~ntFaS~s---- 160 (794)
T KOG0276|consen 109 LPYVLTSSDDM-----------TIKLWDWENEWACEQT-------------FEGHEHYVMQVAFNPKDPNTFASAS---- 160 (794)
T ss_pred CCeEEecCCcc-----------EEEEeeccCceeeeeE-------------EcCcceEEEEEEecCCCccceeeee----
Confidence 88887765542 2234444433222222 3334455668899998775233322
Q ss_pred CCCccccCcccceeeccCCCCCCCCceEeEeeceeEE-EEEecCCc--eEEEeeeecccceeEEEecCCC
Q 004475 266 GDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFS-VSWCDDSL--ALVNETWYKTSQTRTWLVCPGS 332 (751)
Q Consensus 266 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~-~~~spdg~--~l~~~~~~~~~~~~l~~~~~~~ 332 (751)
....+-++.+.. .....++..+...+. +.|-+-|. +|+.++ + ...+-+.|-++
T Consensus 161 --------LDrTVKVWslgs--~~~nfTl~gHekGVN~Vdyy~~gdkpylIsga--D--D~tiKvWDyQt 216 (794)
T KOG0276|consen 161 --------LDRTVKVWSLGS--PHPNFTLEGHEKGVNCVDYYTGGDKPYLISGA--D--DLTIKVWDYQT 216 (794)
T ss_pred --------ccccEEEEEcCC--CCCceeeeccccCcceEEeccCCCcceEEecC--C--CceEEEeecch
Confidence 234666777631 112234444555555 66655554 444433 2 23455556666
No 488
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=91.60 E-value=11 Score=40.20 Aligned_cols=115 Identities=13% Similarity=0.219 Sum_probs=64.5
Q ss_pred eEEEEEcC-CC-CceecCCC-ceEEeeeeCCCCceEEEEEecCCcccccccCCCceeEEEEeCCCceee-e------ecc
Q 004475 157 AQLVLGSL-DG-TAKDFGTP-AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVR-E------LCD 226 (751)
Q Consensus 157 ~~l~~~~~-~G-~~~~lt~~-~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~-~------l~~ 226 (751)
..||+++| .| =..++... +.+..+..++-...|++-.. .+.+..||+..+... . +..
T Consensus 155 ~evYRlNLEqGrfL~P~~~~~~~lN~v~in~~hgLla~Gt~-------------~g~VEfwDpR~ksrv~~l~~~~~v~s 221 (703)
T KOG2321|consen 155 SEVYRLNLEQGRFLNPFETDSGELNVVSINEEHGLLACGTE-------------DGVVEFWDPRDKSRVGTLDAASSVNS 221 (703)
T ss_pred cceEEEEccccccccccccccccceeeeecCccceEEeccc-------------CceEEEecchhhhhheeeecccccCC
Confidence 67899999 66 23334323 55666777777776665432 335667888765432 1 112
Q ss_pred CCCCCCCCCccCCccCCCceeeeecCCCceEEEEEeccCCCCccccCcccceeeccCCCCCCCCceEeEeecee--EE-E
Q 004475 227 LPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLR--FS-V 303 (751)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~spdG~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~--~~-~ 303 (751)
.++.... ..+..+.|+-||-. +.+-. ..+.++++|+- ...+-.+..+... +. +
T Consensus 222 ~pg~~~~--------~svTal~F~d~gL~-~aVGt------------s~G~v~iyDLR---a~~pl~~kdh~~e~pi~~l 277 (703)
T KOG2321|consen 222 HPGGDAA--------PSVTALKFRDDGLH-VAVGT------------STGSVLIYDLR---ASKPLLVKDHGYELPIKKL 277 (703)
T ss_pred Ccccccc--------CcceEEEecCCcee-EEeec------------cCCcEEEEEcc---cCCceeecccCCccceeee
Confidence 2222221 23668999999877 44432 23688899885 3444444443332 33 6
Q ss_pred EEecC
Q 004475 304 SWCDD 308 (751)
Q Consensus 304 ~~spd 308 (751)
.|-+.
T Consensus 278 ~~~~~ 282 (703)
T KOG2321|consen 278 DWQDT 282 (703)
T ss_pred ccccc
Confidence 67443
No 489
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=91.41 E-value=17 Score=38.90 Aligned_cols=121 Identities=16% Similarity=0.158 Sum_probs=59.1
Q ss_pred ceEEeeeeCCCCceEEEEEecCCcccccccCCCceeEEEEeCCCceeeeeccCCCCCCCCCccCCccCCCceeeeecCC-
Q 004475 175 AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADK- 253 (751)
Q Consensus 175 ~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~spdG- 253 (751)
.....++|.|||+.|+..+. ...|++++..++....+...+... ......++.+++++||=
T Consensus 30 ~~Pw~maflPDG~llVtER~-------------~G~I~~v~~~~~~~~~~~~l~~v~-----~~~ge~GLlglal~PdF~ 91 (454)
T TIGR03606 30 NKPWALLWGPDNQLWVTERA-------------TGKILRVNPETGEVKVVFTLPEIV-----NDAQHNGLLGLALHPDFM 91 (454)
T ss_pred CCceEEEEcCCCeEEEEEec-------------CCEEEEEeCCCCceeeeecCCcee-----ccCCCCceeeEEECCCcc
Confidence 45668999999965544321 135778877655443332222110 01124566789999884
Q ss_pred ----CceEEEEEeccCCCCccccCcccceeeccCCCCCC--CCceEeEe-e---ceeE-E-EEEecCCceEEEee
Q 004475 254 ----PSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEG--EKPEILHK-L---DLRF-S-VSWCDDSLALVNET 316 (751)
Q Consensus 254 ----~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~--~~~~~l~~-~---~~~~-~-~~~spdg~~l~~~~ 316 (751)
+..||+.......... ......|.++.++..+. ...+.|.. . ..+. . +.|.|||+ |+++.
T Consensus 92 ~~~~n~~lYvsyt~~~~~~~--~~~~~~I~R~~l~~~~~~l~~~~~Il~~lP~~~~H~GgrI~FgPDG~-LYVs~ 163 (454)
T TIGR03606 92 QEKGNPYVYISYTYKNGDKE--LPNHTKIVRYTYDKSTQTLEKPVDLLAGLPAGNDHNGGRLVFGPDGK-IYYTI 163 (454)
T ss_pred ccCCCcEEEEEEeccCCCCC--ccCCcEEEEEEecCCCCccccceEEEecCCCCCCcCCceEEECCCCc-EEEEE
Confidence 2224444322211110 01234666665531111 11233332 2 1122 3 88999997 55544
No 490
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=91.32 E-value=3.6 Score=43.15 Aligned_cols=129 Identities=13% Similarity=0.117 Sum_probs=64.6
Q ss_pred EEEEEcC---CCCc---eecCCC-ceEEeeeeCCCCceEEEEEecCCcccccccCCCceeEEEE-eCCCc-----eeeee
Q 004475 158 QLVLGSL---DGTA---KDFGTP-AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVW-TTDGK-----LVREL 224 (751)
Q Consensus 158 ~l~~~~~---~G~~---~~lt~~-~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~l~~~-d~~~~-----~~~~l 224 (751)
.|++++- +|+. +.+.+. .....+++.+|| |+++.. ..|+++ +.++. +.+.|
T Consensus 48 rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G--lyV~~~--------------~~i~~~~d~~gdg~ad~~~~~l 111 (367)
T TIGR02604 48 RILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG--VYVATP--------------PDILFLRDKDGDDKADGEREVL 111 (367)
T ss_pred EEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC--EEEeCC--------------CeEEEEeCCCCCCCCCCccEEE
Confidence 5666654 4532 344433 445688999999 665532 246655 44321 22333
Q ss_pred ccCCCCCCCCCccCCccCCCceeeeecCCCceEEEEEeccCCCC--------ccccCcccceeeccCCCCCCCCceEeEe
Q 004475 225 CDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDA--------NVEVSPRDIIYTQPAEPAEGEKPEILHK 296 (751)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~spdG~~~i~~~~~~~~~~~--------~~~~~~~~~l~~~~~~~~~~~~~~~l~~ 296 (751)
........ .........+.|.|||+ ||++........ .......+.+++++.+ ++..+.+..
T Consensus 112 ~~~~~~~~-----~~~~~~~~~l~~gpDG~--LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~~pd---g~~~e~~a~ 181 (367)
T TIGR02604 112 LSGFGGQI-----NNHHHSLNSLAWGPDGW--LYFNHGNTLASKVTRPGTSDESRQGLGGGLFRYNPD---GGKLRVVAH 181 (367)
T ss_pred EEccCCCC-----CcccccccCceECCCCC--EEEecccCCCceeccCCCccCcccccCceEEEEecC---CCeEEEEec
Confidence 22111100 00123355789999996 666443211100 0011223578888875 545554443
Q ss_pred eceeEE-EEEecCCceE
Q 004475 297 LDLRFS-VSWCDDSLAL 312 (751)
Q Consensus 297 ~~~~~~-~~~spdg~~l 312 (751)
.-.... ++|+|+|+.+
T Consensus 182 G~rnp~Gl~~d~~G~l~ 198 (367)
T TIGR02604 182 GFQNPYGHSVDSWGDVF 198 (367)
T ss_pred CcCCCccceECCCCCEE
Confidence 332233 8899988753
No 491
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=91.23 E-value=18 Score=39.18 Aligned_cols=58 Identities=7% Similarity=0.086 Sum_probs=32.8
Q ss_pred cCCceEEEeeeecccceeEEEecCCCCCCcceeeeecccccccCCCCCCCeeeCCCCCEEEEeeee
Q 004475 307 DDSLALVNETWYKTSQTRTWLVCPGSKDVAPRVLFDRVFENVYSDPGSPMMTRTSTGTNVIAKIKK 372 (751)
Q Consensus 307 pdg~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~spDG~~l~~~~~~ 372 (751)
.-|.+|+.... .+.||.+++.+....+..++.+.....+ ... -..||||.+|+-.+.+
T Consensus 281 ssGt~L~AsCt----D~sIy~ynm~s~s~sP~~~~sg~~~~sf--~vk--s~lSpd~~~l~SgSsd 338 (720)
T KOG0321|consen 281 SSGTYLFASCT----DNSIYFYNMRSLSISPVAEFSGKLNSSF--YVK--SELSPDDCSLLSGSSD 338 (720)
T ss_pred CCCCeEEEEec----CCcEEEEeccccCcCchhhccCccccee--eee--eecCCCCceEeccCCC
Confidence 34577765552 3579999987753333333333222111 011 2368999999888854
No 492
>PF04083 Abhydro_lipase: Partial alpha/beta-hydrolase lipase region; InterPro: IPR006693 The alpha/beta hydrolase fold is common to several hydrolytic enzymes of widely differing phylogenetic origin and catalytic function. The core of each enzyme is similar: an alpha/beta sheet, not barrel, of eight beta-sheets connected by alpha-helices []. This entry represents the N-terminal part of an alpha/beta hydrolase domain found in a number of lipases.; GO: 0006629 lipid metabolic process; PDB: 1K8Q_B 1HLG_B.
Probab=91.23 E-value=0.85 Score=33.34 Aligned_cols=45 Identities=16% Similarity=0.079 Sum_probs=25.9
Q ss_pred cCCceEEEEEEcCCCceEEEEEEcCCCCCCCCCCCccEEEEEcCC
Q 004475 477 ASLQKEMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPE 521 (751)
Q Consensus 477 ~~~~~e~i~~~~~~~~~i~~~~~~P~~~~~~~~~~~P~vv~~HGg 521 (751)
..++.|+..+.+.||..+...-+.+.+.......++|+|++.||-
T Consensus 8 ~GY~~E~h~V~T~DGYiL~l~RIp~~~~~~~~~~~k~pVll~HGL 52 (63)
T PF04083_consen 8 HGYPCEEHEVTTEDGYILTLHRIPPGKNSSNQNKKKPPVLLQHGL 52 (63)
T ss_dssp TT---EEEEEE-TTSEEEEEEEE-SBTTCTTTTTT--EEEEE--T
T ss_pred cCCCcEEEEEEeCCCcEEEEEEccCCCCCcccCCCCCcEEEECCc
Confidence 356789999999999888877776655233334468999999994
No 493
>PLN02408 phospholipase A1
Probab=90.81 E-value=0.42 Score=48.73 Aligned_cols=40 Identities=15% Similarity=0.263 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHh
Q 004475 582 VSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAH 621 (751)
Q Consensus 582 ~~d~~~~v~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~ 621 (751)
.+++.+.|+.+.+...-...+|.+.|||+||.+|..+|..
T Consensus 181 r~qVl~eI~~ll~~y~~~~~sI~vTGHSLGGALAtLaA~d 220 (365)
T PLN02408 181 QEMVREEIARLLQSYGDEPLSLTITGHSLGAALATLTAYD 220 (365)
T ss_pred HHHHHHHHHHHHHhcCCCCceEEEeccchHHHHHHHHHHH
Confidence 3444555555555432223469999999999999998864
No 494
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=90.72 E-value=9.9 Score=39.14 Aligned_cols=75 Identities=11% Similarity=0.034 Sum_probs=35.1
Q ss_pred eEEeeeeCCCCceEEEEEecCCcc-cccccCCCceeEEEEeCCCceeeeeccCCCC---CCCCCccCCccCCCceeeeec
Q 004475 176 VYTAVEPSPDQKYVLITSMHRPYS-YKVPCARFSQKVQVWTTDGKLVRELCDLPPA---EDIPVCYNSVREGMRSISWRA 251 (751)
Q Consensus 176 ~~~~~~~SpDG~~i~~~~~~~~~~-~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~---~~~~~~~~~~~~~~~~~~~sp 251 (751)
.-..++|.||| .|+++..+.... ...........|.+++.+++-.. ..+.. ...+..+...-.+...++|.|
T Consensus 115 ~g~~l~fgpDG-~LYvs~G~~~~~~~~~~~~~~~G~ilri~~dG~~p~---dnP~~~~~~~~~~i~A~GlRN~~~~~~d~ 190 (331)
T PF07995_consen 115 NGGGLAFGPDG-KLYVSVGDGGNDDNAQDPNSLRGKILRIDPDGSIPA---DNPFVGDDGADSEIYAYGLRNPFGLAFDP 190 (331)
T ss_dssp -EEEEEE-TTS-EEEEEEB-TTTGGGGCSTTSSTTEEEEEETTSSB-T---TSTTTTSTTSTTTEEEE--SEEEEEEEET
T ss_pred CCccccCCCCC-cEEEEeCCCCCcccccccccccceEEEecccCcCCC---CCccccCCCceEEEEEeCCCccccEEEEC
Confidence 34579999999 666665443321 11111222456888888765221 11111 001122222334455789999
Q ss_pred C-CC
Q 004475 252 D-KP 254 (751)
Q Consensus 252 d-G~ 254 (751)
. |+
T Consensus 191 ~tg~ 194 (331)
T PF07995_consen 191 NTGR 194 (331)
T ss_dssp TTTE
T ss_pred CCCc
Confidence 8 54
No 495
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=90.50 E-value=16 Score=34.48 Aligned_cols=128 Identities=16% Similarity=0.110 Sum_probs=71.2
Q ss_pred eeecCCCceEEEEEeccCCCCccccCcccceeeccCCCCCCCCceEeEeeceeEE--EEEecCCceEEEeeeecccceeE
Q 004475 248 SWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFS--VSWCDDSLALVNETWYKTSQTRT 325 (751)
Q Consensus 248 ~~spdG~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~--~~~spdg~~l~~~~~~~~~~~~l 325 (751)
..+|||++ . .-...+.++.. -...+.||.+-+ +.++..+.. ...++ ++|+.|.+.++|.- +.+.++
T Consensus 115 kvdP~Gry-y-~GtMad~~~~l--e~~~g~Ly~~~~----~h~v~~i~~-~v~IsNgl~Wd~d~K~fY~iD---sln~~V 182 (310)
T KOG4499|consen 115 KVDPDGRY-Y-GGTMADFGDDL--EPIGGELYSWLA----GHQVELIWN-CVGISNGLAWDSDAKKFYYID---SLNYEV 182 (310)
T ss_pred ccCCCCce-e-eeeeccccccc--cccccEEEEecc----CCCceeeeh-hccCCccccccccCcEEEEEc---cCceEE
Confidence 67899997 2 22223323221 123468888876 345544433 33444 89999999998866 334566
Q ss_pred --EEecCCCCC-CcceeeeecccccccCCCCCCCeeeCCCCCEEEEeeeecCCcceEEEEccCCCCCCCCCceeEEEecC
Q 004475 326 --WLVCPGSKD-VAPRVLFDRVFENVYSDPGSPMMTRTSTGTNVIAKIKKENDEQIYILLNGRGFTPEGNIPFLDLFDIN 402 (751)
Q Consensus 326 --~~~~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~spDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~ 402 (751)
|-+|..++. +.++.+.+..-..- . -..-|||..| +.+|.+++....|. .+.++|+.
T Consensus 183 ~a~dyd~~tG~~snr~~i~dlrk~~~----~---e~~~PDGm~I-------D~eG~L~Va~~ng~-------~V~~~dp~ 241 (310)
T KOG4499|consen 183 DAYDYDCPTGDLSNRKVIFDLRKSQP----F---ESLEPDGMTI-------DTEGNLYVATFNGG-------TVQKVDPT 241 (310)
T ss_pred eeeecCCCcccccCcceeEEeccCCC----c---CCCCCCcceE-------ccCCcEEEEEecCc-------EEEEECCC
Confidence 777787762 33444544322110 0 1135677654 23344444433333 68888988
Q ss_pred CCceeE
Q 004475 403 TGSKER 408 (751)
Q Consensus 403 ~g~~~~ 408 (751)
+|+.-.
T Consensus 242 tGK~L~ 247 (310)
T KOG4499|consen 242 TGKILL 247 (310)
T ss_pred CCcEEE
Confidence 887643
No 496
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=90.36 E-value=12 Score=38.49 Aligned_cols=142 Identities=13% Similarity=0.188 Sum_probs=88.7
Q ss_pred ceeEEeecCCCCCCCCcccccCCCCcccccceeecCCCCeEEEEEeecccccccCCceeEEEEEcCCCCeeeccCCCCcc
Q 004475 5 TGIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDIC 84 (751)
Q Consensus 5 ~~~~~~~~~~~~~~g~~~~l~~~~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~~~~~l~i~~~~~g~~~~lt~~~~~~ 84 (751)
..|.+||+++ |+..+.... .+..++...|.|--..+.-.. .+...+.+.|... +-.. +..-.
T Consensus 266 ~TV~lWD~~~----g~p~~s~~~-~~k~Vq~l~wh~~~p~~LLsG---------s~D~~V~l~D~R~--~~~s--~~~wk 327 (463)
T KOG0270|consen 266 KTVKLWDVDT----GKPKSSITH-HGKKVQTLEWHPYEPSVLLSG---------SYDGTVALKDCRD--PSNS--GKEWK 327 (463)
T ss_pred ceEEEEEcCC----CCcceehhh-cCCceeEEEecCCCceEEEec---------cccceEEeeeccC--cccc--CceEE
Confidence 4689999999 998887632 344799999999887777654 4456777777542 0000 00011
Q ss_pred ccceeeeeEEecCCcEEEEeecCCCCCCCCCCCCCCCCceeeccccccccchhhhhccCCccchhhhhhheeeEEEEEcC
Q 004475 85 LNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL 164 (751)
Q Consensus 85 ~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 164 (751)
+.+.+..++|.|-....+|.+.+. +.|+-.|+
T Consensus 328 ~~g~VEkv~w~~~se~~f~~~tdd------------------------------------------------G~v~~~D~ 359 (463)
T KOG0270|consen 328 FDGEVEKVAWDPHSENSFFVSTDD------------------------------------------------GTVYYFDI 359 (463)
T ss_pred eccceEEEEecCCCceeEEEecCC------------------------------------------------ceEEeeec
Confidence 122366788998888887774321 35666666
Q ss_pred --CC-CceecCCC-ceEEeeeeCCCCceEEEEEecCCcccccccCCCceeEEEEeCCCceeeee
Q 004475 165 --DG-TAKDFGTP-AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVREL 224 (751)
Q Consensus 165 --~G-~~~~lt~~-~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l 224 (751)
.| ....+.-+ ..+..+++++--..++.+... ...+.+|+.+....+.+
T Consensus 360 R~~~~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~------------d~~Vklw~~~~~~~~~v 411 (463)
T KOG0270|consen 360 RNPGKPVWTLKAHDDEISGLSVNIQTPGLLSTAST------------DKVVKLWKFDVDSPKSV 411 (463)
T ss_pred CCCCCceeEEEeccCCcceEEecCCCCcceeeccc------------cceEEEEeecCCCCccc
Confidence 34 23344444 678888888888777776433 23466777765555444
No 497
>PF03283 PAE: Pectinacetylesterase
Probab=90.28 E-value=0.45 Score=49.14 Aligned_cols=39 Identities=13% Similarity=0.261 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHH
Q 004475 582 VSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLA 620 (751)
Q Consensus 582 ~~d~~~~v~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~ 620 (751)
...+.+++++|.+.+.-++++|.|.|.|+||.-++..+-
T Consensus 137 ~~i~~avl~~l~~~gl~~a~~vlltG~SAGG~g~~~~~d 175 (361)
T PF03283_consen 137 YRILRAVLDDLLSNGLPNAKQVLLTGCSAGGLGAILHAD 175 (361)
T ss_pred HHHHHHHHHHHHHhcCcccceEEEeccChHHHHHHHHHH
Confidence 344668899998886667889999999999999987653
No 498
>PLN02571 triacylglycerol lipase
Probab=90.25 E-value=0.52 Score=48.85 Aligned_cols=39 Identities=21% Similarity=0.248 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHh
Q 004475 583 SSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAH 621 (751)
Q Consensus 583 ~d~~~~v~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~ 621 (751)
+++...|+.+.++..-..-+|.++|||+||.+|..+|..
T Consensus 208 ~qvl~eV~~L~~~y~~e~~sI~VTGHSLGGALAtLaA~d 246 (413)
T PLN02571 208 DQVLNEVGRLVEKYKDEEISITICGHSLGAALATLNAVD 246 (413)
T ss_pred HHHHHHHHHHHHhcCcccccEEEeccchHHHHHHHHHHH
Confidence 344444444444322112379999999999999998864
No 499
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=90.16 E-value=29 Score=37.10 Aligned_cols=109 Identities=11% Similarity=0.058 Sum_probs=52.2
Q ss_pred CCceeeeecCCCceEEEEEeccCCCCccccCcccceeeccCCCCCCCCceE-------eEe-eceeEE-EEEecCC----
Q 004475 243 GMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEI-------LHK-LDLRFS-VSWCDDS---- 309 (751)
Q Consensus 243 ~~~~~~~spdG~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~-------l~~-~~~~~~-~~~spdg---- 309 (751)
..+.++|.|||+ +++++. ..++|++++.+ +..... ... ..+.+. ++++||-
T Consensus 31 ~Pw~maflPDG~--llVtER-----------~~G~I~~v~~~---~~~~~~~~~l~~v~~~~ge~GLlglal~PdF~~~~ 94 (454)
T TIGR03606 31 KPWALLWGPDNQ--LWVTER-----------ATGKILRVNPE---TGEVKVVFTLPEIVNDAQHNGLLGLALHPDFMQEK 94 (454)
T ss_pred CceEEEEcCCCe--EEEEEe-----------cCCEEEEEeCC---CCceeeeecCCceeccCCCCceeeEEECCCccccC
Confidence 356889999996 555541 12577777643 211111 111 233344 7888774
Q ss_pred --ceEEEee--eecc----cceeEEEecCCCC---CCcceeeeecccccccCCCCCCCeeeCCCCCEEEEee
Q 004475 310 --LALVNET--WYKT----SQTRTWLVCPGSK---DVAPRVLFDRVFENVYSDPGSPMMTRTSTGTNVIAKI 370 (751)
Q Consensus 310 --~~l~~~~--~~~~----~~~~l~~~~~~~~---~~~~~~l~~~~~~~~~~~~~~~~~~~spDG~~l~~~~ 370 (751)
++|++.. .... ....|.++.++.. ....+.+........ .+ ....++|.|||+ |++..
T Consensus 95 ~n~~lYvsyt~~~~~~~~~~~~~I~R~~l~~~~~~l~~~~~Il~~lP~~~-~H-~GgrI~FgPDG~-LYVs~ 163 (454)
T TIGR03606 95 GNPYVYISYTYKNGDKELPNHTKIVRYTYDKSTQTLEKPVDLLAGLPAGN-DH-NGGRLVFGPDGK-IYYTI 163 (454)
T ss_pred CCcEEEEEEeccCCCCCccCCcEEEEEEecCCCCccccceEEEecCCCCC-Cc-CCceEEECCCCc-EEEEE
Confidence 3444432 1111 2356777765421 112233332211110 11 111277999996 55544
No 500
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=90.08 E-value=34 Score=37.69 Aligned_cols=56 Identities=13% Similarity=0.127 Sum_probs=41.1
Q ss_pred eeEEeecCCCCCCCCcccccCCCCcccccceeecCCCCeEEEEEeecccccccCCceeEEEEEcCCCCee
Q 004475 6 GIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAK 75 (751)
Q Consensus 6 ~~~~~~~~~~~~~g~~~~l~~~~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~~~~~l~i~~~~~g~~~ 75 (751)
.+++|++.. +..++.-+. ....+....|+|....+.... .+.++|.++|+..+..+
T Consensus 223 ~~~vW~~~~--p~~Pe~~~~---~~s~v~~~~f~p~~p~ll~gG---------~y~GqV~lWD~~~~~~~ 278 (555)
T KOG1587|consen 223 VLLVWSLKN--PNTPELVLE---SPSEVTCLKFCPFDPNLLAGG---------CYNGQVVLWDLRKGSDT 278 (555)
T ss_pred eEEEEecCC--CCCceEEEe---cCCceeEEEeccCCcceEEee---------ccCceEEEEEccCCCCC
Confidence 689999987 544444443 222578889999999988854 56789999999877654
Done!