Query 004476
Match_columns 751
No_of_seqs 222 out of 264
Neff 4.6
Searched_HMMs 29240
Date Tue Mar 26 02:20:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004476.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/004476hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2klz_A Ataxin-3; UIM, ubiquiti 42.8 6.3 0.00022 31.4 0.5 19 554-572 3-21 (52)
2 2zop_A Putative uncharacterize 30.7 18 0.00063 33.0 1.6 17 687-703 39-55 (114)
3 2oeb_A Hypothetical protein; u 23.9 28 0.00097 33.5 1.6 18 687-704 46-63 (155)
4 3kn3_A Putative periplasmic pr 8.3 1.4E+02 0.0047 30.4 1.8 16 688-703 151-166 (242)
5 3lr1_A Tungstate ABC transport 7.1 1.6E+02 0.0055 29.7 1.6 16 688-703 150-165 (236)
6 2qwt_A Transcriptional regulat 7.0 1.6E+02 0.0055 26.9 1.5 31 691-722 18-48 (196)
7 3qrx_B Melittin; calcium-bindi 6.9 1.6E+02 0.0055 20.4 1.0 20 691-712 1-20 (26)
8 3u5c_K 40S ribosomal protein S 6.6 1.7E+02 0.0059 26.6 1.4 23 689-711 39-61 (105)
9 2v6x_B DOA4-independent degrad 6.5 1.9E+02 0.0063 23.3 1.4 14 557-570 39-52 (54)
10 3muq_A Uncharacterized conserv 6.2 2E+02 0.0069 28.9 1.8 16 688-703 150-165 (237)
No 1
>2klz_A Ataxin-3; UIM, ubiquitin-binding, hydrolase, neurodegenerati nucleus, phosphoprotein, spinocerebellar ataxia, transcript transcription regulation; NMR {Homo sapiens}
Probab=42.80 E-value=6.3 Score=31.40 Aligned_cols=19 Identities=32% Similarity=0.571 Sum_probs=15.3
Q ss_pred CCCChHHHHHHHHHHHHHH
Q 004476 554 IADDEDDLYKSLERARKLA 572 (751)
Q Consensus 554 ~~eDDeDLQasLaraRRla 572 (751)
+++|+++||.+|+-+|+..
T Consensus 3 ~dEDEedlqrALalSRQE~ 21 (52)
T 2klz_A 3 LDEDEEDLQRALALSRQEI 21 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred cccchHHHHHHHHHHHHHh
Confidence 3457889999999999753
No 2
>2zop_A Putative uncharacterized protein TTHB164; all alpha proteins, plasmid, NPPSFA; 2.10A {Thermus thermophilus HB8}
Probab=30.74 E-value=18 Score=32.96 Aligned_cols=17 Identities=35% Similarity=0.608 Sum_probs=15.7
Q ss_pred hhcccHHHHHHHHHhcC
Q 004476 687 AVGKGLAGALSLLKDRG 703 (751)
Q Consensus 687 ~Vg~GLAAAL~LLk~KG 703 (751)
++..|||.||++|.+||
T Consensus 39 I~~nGL~qalAF~~sK~ 55 (114)
T 2zop_A 39 VRQAGLSQALAFVDSRG 55 (114)
T ss_dssp HHHHCHHHHHHHHHTCC
T ss_pred HHHCcHHHHHHHHHHcc
Confidence 45899999999999998
No 3
>2oeb_A Hypothetical protein; unknown function, PSI-2, MCSG, struc genomics, protein structure initiative, midwest center for structural genomics; 1.66A {Archaeoglobus fulgidus} SCOP: a.70.2.1
Probab=23.86 E-value=28 Score=33.54 Aligned_cols=18 Identities=17% Similarity=0.373 Sum_probs=16.2
Q ss_pred hhcccHHHHHHHHHhcCC
Q 004476 687 AVGKGLAGALSLLKDRGT 704 (751)
Q Consensus 687 ~Vg~GLAAAL~LLk~KGl 704 (751)
++..|||.||++|..||-
T Consensus 46 I~~NGL~qtLAFl~sK~~ 63 (155)
T 2oeb_A 46 ILNNGLGATLAFFLSKLE 63 (155)
T ss_dssp HHHHCHHHHHHHHHHTSC
T ss_pred HHHccHHHHHHHHHHhcc
Confidence 468999999999999976
No 4
>3kn3_A Putative periplasmic protein; alpha-beta structure, periplasmic binding protein fold, STRU genomics, PSI-2, protein structure initiative; HET: GSH CIT; 2.41A {Wolinella succinogenes}
Probab=8.28 E-value=1.4e+02 Score=30.44 Aligned_cols=16 Identities=13% Similarity=0.565 Sum_probs=14.1
Q ss_pred hcccHHHHHHHHHhcC
Q 004476 688 VGKGLAGALSLLKDRG 703 (751)
Q Consensus 688 Vg~GLAAAL~LLk~KG 703 (751)
+|+||++||.++-++|
T Consensus 151 ~g~gm~~~l~~a~~~~ 166 (242)
T 3kn3_A 151 AGQGMLATINIAEEQK 166 (242)
T ss_dssp CCSCHHHHHHHHHHTT
T ss_pred cCcCHHHHHHHHHHcC
Confidence 7999999999988765
No 5
>3lr1_A Tungstate ABC transporter, periplasmic tungstate- binding protein; the tungstate ABC transporter, structural genomics, PSI, MCSG; 1.80A {Geobacter sulfurreducens}
Probab=7.08 E-value=1.6e+02 Score=29.71 Aligned_cols=16 Identities=19% Similarity=0.605 Sum_probs=14.1
Q ss_pred hcccHHHHHHHHHhcC
Q 004476 688 VGKGLAGALSLLKDRG 703 (751)
Q Consensus 688 Vg~GLAAAL~LLk~KG 703 (751)
+|+||++||.++-+++
T Consensus 150 ~g~gm~~~l~~a~~~~ 165 (236)
T 3lr1_A 150 AGQGMGPVITMATERR 165 (236)
T ss_dssp CCSCHHHHHHHHHHHT
T ss_pred cCcCHHHHHHHHHHcC
Confidence 7999999999987765
No 6
>2qwt_A Transcriptional regulator, TETR family; structural genomics, PSI-2, protein structure initiative; 2.30A {Mycobacterium vanbaalenii pyr-1}
Probab=7.04 E-value=1.6e+02 Score=26.89 Aligned_cols=31 Identities=16% Similarity=0.038 Sum_probs=23.9
Q ss_pred cHHHHHHHHHhcCCcccccccCCCCcchhhhH
Q 004476 691 GLAGALSLLKDRGTLKEGIDWGGRNMDKKRAS 722 (751)
Q Consensus 691 GLAAAL~LLk~KGlLke~vq~~gR~~dkkks~ 722 (751)
=|.+|+.|+.++|| ..+|..+++...-.+..
T Consensus 18 Il~aA~~lf~~~G~-~~t~~~IA~~agvs~~t 48 (196)
T 2qwt_A 18 VLEVAYDTFAAEGL-GVPMDEIARRAGVGAGT 48 (196)
T ss_dssp HHHHHHHHHHHTCT-TSCHHHHHHHTTSCHHH
T ss_pred HHHHHHHHHHhcCC-CCCHHHHHHHhCCCHHH
Confidence 36899999999999 99888877665544433
No 7
>3qrx_B Melittin; calcium-binding, EF-hand, cell division, calcium binding, ME binding protein-toxin complex; 2.20A {Chlamydomonas reinhardtii} PDB: 1bh1_A 2mlt_A
Probab=6.90 E-value=1.6e+02 Score=20.37 Aligned_cols=20 Identities=30% Similarity=0.526 Sum_probs=14.4
Q ss_pred cHHHHHHHHHhcCCcccccccC
Q 004476 691 GLAGALSLLKDRGTLKEGIDWG 712 (751)
Q Consensus 691 GLAAAL~LLk~KGlLke~vq~~ 712 (751)
|+||+|+.|- +-|..-|.|.
T Consensus 1 giGa~LKVLa--~~LP~liSWi 20 (26)
T 3qrx_B 1 GIGAVLKVLT--TGLPALISWI 20 (26)
T ss_pred CchHHHHHHH--ccchHHHHHH
Confidence 7899999885 4566656663
No 8
>3u5c_K 40S ribosomal protein S10-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3u5g_K
Probab=6.56 E-value=1.7e+02 Score=26.62 Aligned_cols=23 Identities=26% Similarity=0.440 Sum_probs=20.3
Q ss_pred cccHHHHHHHHHhcCCccccccc
Q 004476 689 GKGLAGALSLLKDRGTLKEGIDW 711 (751)
Q Consensus 689 g~GLAAAL~LLk~KGlLke~vq~ 711 (751)
+=.|--||.-|+++||++++-.|
T Consensus 39 NL~Vik~mqSLkSrGyVkeqFaW 61 (105)
T 3u5c_K 39 NLYVIKALQSLTSKGYVKTQFSW 61 (105)
T ss_dssp HHHHHHHHHHHHHTSSEEEECTT
T ss_pred chhHHHHHhcccccceeccEecc
Confidence 45678899999999999999888
No 9
>2v6x_B DOA4-independent degradation protein 4; protein transport, vacuole, endosome, transport, ESCRT-III, VPS2, VPS4, SKD1, VPS4B, VPS4A; 1.98A {Saccharomyces cerevisiae}
Probab=6.46 E-value=1.9e+02 Score=23.30 Aligned_cols=14 Identities=36% Similarity=0.536 Sum_probs=0.0
Q ss_pred ChHHHHHHHHHHHH
Q 004476 557 DEDDLYKSLERARK 570 (751)
Q Consensus 557 DDeDLQasLaraRR 570 (751)
+|+|||+-|..-||
T Consensus 39 ~ddDLQARLdsLRR 52 (54)
T 2v6x_B 39 PDDDLQARLNTLKK 52 (54)
T ss_dssp CCHHHHHHHHHHHC
T ss_pred chHHHHHHHHHhcc
No 10
>3muq_A Uncharacterized conserved protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 2.05A {Vibrio parahaemolyticus}
Probab=6.22 E-value=2e+02 Score=28.95 Aligned_cols=16 Identities=25% Similarity=0.563 Sum_probs=0.0
Q ss_pred hcccHHHHHHHHHhcC
Q 004476 688 VGKGLAGALSLLKDRG 703 (751)
Q Consensus 688 Vg~GLAAAL~LLk~KG 703 (751)
.|+|||+||.++-+++
T Consensus 150 ~g~gm~~~l~~a~~~~ 165 (237)
T 3muq_A 150 VGQGMGPTLNMASEMQ 165 (237)
T ss_dssp CCCCHHHHHHHHHHTT
T ss_pred hCcCHHHHHHHHHhcC
Done!