BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 004477
(751 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL2|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL3|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
pdb|2XL3|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
Length = 334
Score = 65.9 bits (159), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 44/138 (31%), Positives = 72/138 (52%), Gaps = 14/138 (10%)
Query: 43 ERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFV 102
E+ + GH+ ++ ++W+S +LL+S SDD + +W SS K L +++ GHS VFC F
Sbjct: 80 EKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLK-GHSNYVFCCNFN 138
Query: 103 PETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHV 162
P+++ L+VSG+ D VR++++ +G+ L + H R L V
Sbjct: 139 PQSN--LIVSGSFDESVRIWDVK--TGKCLKTLPAHSDPVSAVHFNRDGSLIV------- 187
Query: 163 VWSASEDGTLRQHDFRQG 180
S+S DG R D G
Sbjct: 188 --SSSYDGLCRIWDTASG 203
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 41/82 (50%), Gaps = 15/82 (18%)
Query: 617 QRYVGHCNVGTDIKQASFLGQRGDYIASGSDDGRWFIWEKQT------------VVNCVQ 664
+ Y GH N I A+F G +I SGS+D +IW QT VV
Sbjct: 250 KTYTGHKNEKYCI-FANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTA 308
Query: 665 CHPFDCVVATSGIDN--TIKIW 684
CHP + ++A++ ++N TIK+W
Sbjct: 309 CHPTENIIASAALENDKTIKLW 330
Score = 34.3 bits (77), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 43/83 (51%), Gaps = 2/83 (2%)
Query: 44 RELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVP 103
+ L H V+A+ +N GSL++S S D +W +S + L ++ + V KF P
Sbjct: 165 KTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSP 224
Query: 104 ETSDELVVSGAGDAEVRLFNLSR 126
+ + +++ D ++L++ S+
Sbjct: 225 --NGKYILAATLDNTLKLWDYSK 245
Score = 32.7 bits (73), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 20/73 (27%), Positives = 37/73 (50%), Gaps = 2/73 (2%)
Query: 53 VNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCT-KFVPETSDELVV 111
V+ + ++ G +++ + D + +W YS K L + TGH +C T + +V
Sbjct: 217 VSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTY-TGHKNEKYCIFANFSVTGGKWIV 275
Query: 112 SGAGDAEVRLFNL 124
SG+ D V ++NL
Sbjct: 276 SGSEDNLVYIWNL 288
Score = 29.6 bits (65), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 15/63 (23%), Positives = 36/63 (57%), Gaps = 5/63 (7%)
Query: 62 GSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGA--GDAEV 119
G ++SGS+D + +W+ +++++ ++ GH+ V T P ++ ++ S A D +
Sbjct: 271 GKWIVSGSEDNLVYIWNLQTKEIVQKLQ-GHTDVVISTACHP--TENIIASAALENDKTI 327
Query: 120 RLF 122
+L+
Sbjct: 328 KLW 330
>pdb|2GNQ|A Chain A, Structure Of Wdr5
Length = 336
Score = 65.5 bits (158), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 44/138 (31%), Positives = 72/138 (52%), Gaps = 14/138 (10%)
Query: 43 ERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFV 102
E+ + GH+ ++ ++W+S +LL+S SDD + +W SS K L +++ GHS VFC F
Sbjct: 82 EKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLK-GHSNYVFCCNFN 140
Query: 103 PETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHV 162
P+++ L+VSG+ D VR++++ +G+ L + H R L V
Sbjct: 141 PQSN--LIVSGSFDESVRIWDVK--TGKCLKTLPAHSDPVSAVHFNRDGSLIV------- 189
Query: 163 VWSASEDGTLRQHDFRQG 180
S+S DG R D G
Sbjct: 190 --SSSYDGLCRIWDTASG 205
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 41/82 (50%), Gaps = 15/82 (18%)
Query: 617 QRYVGHCNVGTDIKQASFLGQRGDYIASGSDDGRWFIWEKQT------------VVNCVQ 664
+ Y GH N I A+F G +I SGS+D +IW QT VV
Sbjct: 252 KTYTGHKNEKYCI-FANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTA 310
Query: 665 CHPFDCVVATSGIDN--TIKIW 684
CHP + ++A++ ++N TIK+W
Sbjct: 311 CHPTENIIASAALENDKTIKLW 332
Score = 33.9 bits (76), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 43/83 (51%), Gaps = 2/83 (2%)
Query: 44 RELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVP 103
+ L H V+A+ +N GSL++S S D +W +S + L ++ + V KF P
Sbjct: 167 KTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSP 226
Query: 104 ETSDELVVSGAGDAEVRLFNLSR 126
+ + +++ D ++L++ S+
Sbjct: 227 --NGKYILAATLDNTLKLWDYSK 247
Score = 32.7 bits (73), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 20/73 (27%), Positives = 37/73 (50%), Gaps = 2/73 (2%)
Query: 53 VNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCT-KFVPETSDELVV 111
V+ + ++ G +++ + D + +W YS K L + TGH +C T + +V
Sbjct: 219 VSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTY-TGHKNEKYCIFANFSVTGGKWIV 277
Query: 112 SGAGDAEVRLFNL 124
SG+ D V ++NL
Sbjct: 278 SGSEDNLVYIWNL 290
Score = 29.3 bits (64), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 15/63 (23%), Positives = 36/63 (57%), Gaps = 5/63 (7%)
Query: 62 GSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGA--GDAEV 119
G ++SGS+D + +W+ +++++ ++ GH+ V T P ++ ++ S A D +
Sbjct: 273 GKWIVSGSEDNLVYIWNLQTKEIVQKLQ-GHTDVVISTACHP--TENIIASAALENDKTI 329
Query: 120 RLF 122
+L+
Sbjct: 330 KLW 332
>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction
Length = 318
Score = 65.5 bits (158), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 44/138 (31%), Positives = 72/138 (52%), Gaps = 14/138 (10%)
Query: 43 ERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFV 102
E+ + GH+ ++ ++W+S +LL+S SDD + +W SS K L +++ GHS VFC F
Sbjct: 64 EKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLK-GHSNYVFCCNFN 122
Query: 103 PETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHV 162
P+++ L+VSG+ D VR++++ +G+ L + H R L V
Sbjct: 123 PQSN--LIVSGSFDESVRIWDVK--TGKCLKTLPAHSDPVSAVHFNRDGSLIV------- 171
Query: 163 VWSASEDGTLRQHDFRQG 180
S+S DG R D G
Sbjct: 172 --SSSYDGLCRIWDTASG 187
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 41/82 (50%), Gaps = 15/82 (18%)
Query: 617 QRYVGHCNVGTDIKQASFLGQRGDYIASGSDDGRWFIWEKQT------------VVNCVQ 664
+ Y GH N I A+F G +I SGS+D +IW QT VV
Sbjct: 234 KTYTGHKNEKYCI-FANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTA 292
Query: 665 CHPFDCVVATSGIDN--TIKIW 684
CHP + ++A++ ++N TIK+W
Sbjct: 293 CHPTENIIASAALENDKTIKLW 314
Score = 33.9 bits (76), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 43/83 (51%), Gaps = 2/83 (2%)
Query: 44 RELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVP 103
+ L H V+A+ +N GSL++S S D +W +S + L ++ + V KF P
Sbjct: 149 KTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSP 208
Query: 104 ETSDELVVSGAGDAEVRLFNLSR 126
+ + +++ D ++L++ S+
Sbjct: 209 --NGKYILAATLDNTLKLWDYSK 229
Score = 32.3 bits (72), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 20/73 (27%), Positives = 37/73 (50%), Gaps = 2/73 (2%)
Query: 53 VNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCT-KFVPETSDELVV 111
V+ + ++ G +++ + D + +W YS K L + TGH +C T + +V
Sbjct: 201 VSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTY-TGHKNEKYCIFANFSVTGGKWIV 259
Query: 112 SGAGDAEVRLFNL 124
SG+ D V ++NL
Sbjct: 260 SGSEDNLVYIWNL 272
Score = 29.3 bits (64), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 19/84 (22%), Positives = 44/84 (52%), Gaps = 8/84 (9%)
Query: 44 RELEGHQG---CVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTK 100
+ GH+ C+ A + G ++SGS+D + +W+ +++++ ++ GH+ V T
Sbjct: 234 KTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQ-GHTDVVISTA 292
Query: 101 FVPETSDELVVSGA--GDAEVRLF 122
P ++ ++ S A D ++L+
Sbjct: 293 CHP--TENIIASAALENDKTIKLW 314
>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
pdb|2G99|B Chain B, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 308
Score = 65.5 bits (158), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 44/138 (31%), Positives = 72/138 (52%), Gaps = 14/138 (10%)
Query: 43 ERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFV 102
E+ + GH+ ++ ++W+S +LL+S SDD + +W SS K L +++ GHS VFC F
Sbjct: 54 EKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLK-GHSNYVFCCNFN 112
Query: 103 PETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHV 162
P+++ L+VSG+ D VR++++ +G+ L + H R L V
Sbjct: 113 PQSN--LIVSGSFDESVRIWDVK--TGKCLKTLPAHSDPVSAVHFNRDGSLIV------- 161
Query: 163 VWSASEDGTLRQHDFRQG 180
S+S DG R D G
Sbjct: 162 --SSSYDGLCRIWDTASG 177
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 41/82 (50%), Gaps = 15/82 (18%)
Query: 617 QRYVGHCNVGTDIKQASFLGQRGDYIASGSDDGRWFIWEKQT------------VVNCVQ 664
+ Y GH N I A+F G +I SGS+D +IW QT VV
Sbjct: 224 KTYTGHKNEKYCI-FANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTA 282
Query: 665 CHPFDCVVATSGIDN--TIKIW 684
CHP + ++A++ ++N TIK+W
Sbjct: 283 CHPTENIIASAALENDKTIKLW 304
Score = 33.5 bits (75), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 43/83 (51%), Gaps = 2/83 (2%)
Query: 44 RELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVP 103
+ L H V+A+ +N GSL++S S D +W +S + L ++ + V KF P
Sbjct: 139 KTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSP 198
Query: 104 ETSDELVVSGAGDAEVRLFNLSR 126
+ + +++ D ++L++ S+
Sbjct: 199 --NGKYILAATLDNTLKLWDYSK 219
Score = 32.3 bits (72), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 20/73 (27%), Positives = 37/73 (50%), Gaps = 2/73 (2%)
Query: 53 VNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCT-KFVPETSDELVV 111
V+ + ++ G +++ + D + +W YS K L + TGH +C T + +V
Sbjct: 191 VSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTY-TGHKNEKYCIFANFSVTGGKWIV 249
Query: 112 SGAGDAEVRLFNL 124
SG+ D V ++NL
Sbjct: 250 SGSEDNLVYIWNL 262
>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3PSL|B Chain B, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3UVK|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll2
pdb|3UVL|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll3
pdb|3UVM|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll4
pdb|3UVN|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVN|C Chain C, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVO|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1b
Length = 318
Score = 65.5 bits (158), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 44/138 (31%), Positives = 72/138 (52%), Gaps = 14/138 (10%)
Query: 43 ERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFV 102
E+ + GH+ ++ ++W+S +LL+S SDD + +W SS K L +++ GHS VFC F
Sbjct: 64 EKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLK-GHSNYVFCCNFN 122
Query: 103 PETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHV 162
P+++ L+VSG+ D VR++++ +G+ L + H R L V
Sbjct: 123 PQSN--LIVSGSFDESVRIWDVK--TGKCLKTLPAHSDPVSAVHFNRDGSLIV------- 171
Query: 163 VWSASEDGTLRQHDFRQG 180
S+S DG R D G
Sbjct: 172 --SSSYDGLCRIWDTASG 187
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 41/82 (50%), Gaps = 15/82 (18%)
Query: 617 QRYVGHCNVGTDIKQASFLGQRGDYIASGSDDGRWFIWEKQT------------VVNCVQ 664
+ Y GH N I A+F G +I SGS+D +IW QT VV
Sbjct: 234 KTYTGHKNEKYCI-FANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTA 292
Query: 665 CHPFDCVVATSGIDN--TIKIW 684
CHP + ++A++ ++N TIK+W
Sbjct: 293 CHPTENIIASAALENDKTIKLW 314
Score = 33.5 bits (75), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 43/83 (51%), Gaps = 2/83 (2%)
Query: 44 RELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVP 103
+ L H V+A+ +N GSL++S S D +W +S + L ++ + V KF P
Sbjct: 149 KTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSP 208
Query: 104 ETSDELVVSGAGDAEVRLFNLSR 126
+ + +++ D ++L++ S+
Sbjct: 209 --NGKYILAATLDNTLKLWDYSK 229
Score = 32.3 bits (72), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 20/73 (27%), Positives = 37/73 (50%), Gaps = 2/73 (2%)
Query: 53 VNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCT-KFVPETSDELVV 111
V+ + ++ G +++ + D + +W YS K L + TGH +C T + +V
Sbjct: 201 VSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTY-TGHKNEKYCIFANFSVTGGKWIV 259
Query: 112 SGAGDAEVRLFNL 124
SG+ D V ++NL
Sbjct: 260 SGSEDNLVYIWNL 272
Score = 28.9 bits (63), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 15/63 (23%), Positives = 36/63 (57%), Gaps = 5/63 (7%)
Query: 62 GSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGA--GDAEV 119
G ++SGS+D + +W+ +++++ ++ GH+ V T P ++ ++ S A D +
Sbjct: 255 GKWIVSGSEDNLVYIWNLQTKEIVQKLQ-GHTDVVISTACHP--TENIIASAALENDKTI 311
Query: 120 RLF 122
+L+
Sbjct: 312 KLW 314
>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 311
Score = 65.5 bits (158), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 44/138 (31%), Positives = 72/138 (52%), Gaps = 14/138 (10%)
Query: 43 ERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFV 102
E+ + GH+ ++ ++W+S +LL+S SDD + +W SS K L +++ GHS VFC F
Sbjct: 57 EKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLK-GHSNYVFCCNFN 115
Query: 103 PETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHV 162
P+++ L+VSG+ D VR++++ +G+ L + H R L V
Sbjct: 116 PQSN--LIVSGSFDESVRIWDVK--TGKCLKTLPAHSDPVSAVHFNRDGSLIV------- 164
Query: 163 VWSASEDGTLRQHDFRQG 180
S+S DG R D G
Sbjct: 165 --SSSYDGLCRIWDTASG 180
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 41/82 (50%), Gaps = 15/82 (18%)
Query: 617 QRYVGHCNVGTDIKQASFLGQRGDYIASGSDDGRWFIWEKQT------------VVNCVQ 664
+ Y GH N I A+F G +I SGS+D +IW QT VV
Sbjct: 227 KTYTGHKNEKYCI-FANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTA 285
Query: 665 CHPFDCVVATSGIDN--TIKIW 684
CHP + ++A++ ++N TIK+W
Sbjct: 286 CHPTENIIASAALENDKTIKLW 307
Score = 33.5 bits (75), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 43/83 (51%), Gaps = 2/83 (2%)
Query: 44 RELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVP 103
+ L H V+A+ +N GSL++S S D +W +S + L ++ + V KF P
Sbjct: 142 KTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSP 201
Query: 104 ETSDELVVSGAGDAEVRLFNLSR 126
+ + +++ D ++L++ S+
Sbjct: 202 --NGKYILAATLDNTLKLWDYSK 222
Score = 32.3 bits (72), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 20/73 (27%), Positives = 37/73 (50%), Gaps = 2/73 (2%)
Query: 53 VNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCT-KFVPETSDELVV 111
V+ + ++ G +++ + D + +W YS K L + TGH +C T + +V
Sbjct: 194 VSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTY-TGHKNEKYCIFANFSVTGGKWIV 252
Query: 112 SGAGDAEVRLFNL 124
SG+ D V ++NL
Sbjct: 253 SGSEDNLVYIWNL 265
>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel
Histone Mark That Supports Euchromatin Maintenance
Length = 318
Score = 65.5 bits (158), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 44/138 (31%), Positives = 72/138 (52%), Gaps = 14/138 (10%)
Query: 43 ERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFV 102
E+ + GH+ ++ ++W+S +LL+S SDD + +W SS K L +++ GHS VFC F
Sbjct: 64 EKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLK-GHSNYVFCCNFN 122
Query: 103 PETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHV 162
P+++ L+VSG+ D VR++++ +G+ L + H R L V
Sbjct: 123 PQSN--LIVSGSFDESVRIWDVK--TGKCLKTLPAHSDPVSAVHFNRDGSLIV------- 171
Query: 163 VWSASEDGTLRQHDFRQG 180
S+S DG R D G
Sbjct: 172 --SSSYDGLCRIWDTASG 187
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 41/82 (50%), Gaps = 15/82 (18%)
Query: 617 QRYVGHCNVGTDIKQASFLGQRGDYIASGSDDGRWFIWEKQT------------VVNCVQ 664
+ Y GH N I A+F G +I SGS+D +IW QT VV
Sbjct: 234 KTYTGHKNEKYCI-FANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTA 292
Query: 665 CHPFDCVVATSGIDN--TIKIW 684
CHP + ++A++ ++N TIK+W
Sbjct: 293 CHPTENIIASAALENDKTIKLW 314
Score = 33.5 bits (75), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 43/83 (51%), Gaps = 2/83 (2%)
Query: 44 RELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVP 103
+ L H V+A+ +N GSL++S S D +W +S + L ++ + V KF P
Sbjct: 149 KTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSP 208
Query: 104 ETSDELVVSGAGDAEVRLFNLSR 126
+ + +++ D ++L++ S+
Sbjct: 209 --NGKYILAATLDNTLKLWDYSK 229
Score = 32.3 bits (72), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 20/73 (27%), Positives = 37/73 (50%), Gaps = 2/73 (2%)
Query: 53 VNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCT-KFVPETSDELVV 111
V+ + ++ G +++ + D + +W YS K L + TGH +C T + +V
Sbjct: 201 VSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTY-TGHKNEKYCIFANFSVTGGKWIV 259
Query: 112 SGAGDAEVRLFNL 124
SG+ D V ++NL
Sbjct: 260 SGSEDNLVYIWNL 272
Score = 28.9 bits (63), Expect = 10.0, Method: Compositional matrix adjust.
Identities = 19/84 (22%), Positives = 44/84 (52%), Gaps = 8/84 (9%)
Query: 44 RELEGHQG---CVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTK 100
+ GH+ C+ A + G ++SGS+D + +W+ +++++ ++ GH+ V T
Sbjct: 234 KTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQ-GHTDVVISTA 292
Query: 101 FVPETSDELVVSGA--GDAEVRLF 122
P ++ ++ S A D ++L+
Sbjct: 293 CHP--TENIIASAALENDKTIKLW 314
>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|C Chain C, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|D Chain D, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|4IA9|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 In Complex
With 2-
Chloro-4-Fluoro-3-Methyl-N-[2-(4-Methylpiperazin-1-Yl)-
5- Nitrophenyl]benzamide
Length = 312
Score = 65.5 bits (158), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 44/138 (31%), Positives = 72/138 (52%), Gaps = 14/138 (10%)
Query: 43 ERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFV 102
E+ + GH+ ++ ++W+S +LL+S SDD + +W SS K L +++ GHS VFC F
Sbjct: 58 EKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLK-GHSNYVFCCNFN 116
Query: 103 PETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHV 162
P+++ L+VSG+ D VR++++ +G+ L + H R L V
Sbjct: 117 PQSN--LIVSGSFDESVRIWDVK--TGKCLKTLPAHSDPVSAVHFNRDGSLIV------- 165
Query: 163 VWSASEDGTLRQHDFRQG 180
S+S DG R D G
Sbjct: 166 --SSSYDGLCRIWDTASG 181
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 41/82 (50%), Gaps = 15/82 (18%)
Query: 617 QRYVGHCNVGTDIKQASFLGQRGDYIASGSDDGRWFIWEKQT------------VVNCVQ 664
+ Y GH N I A+F G +I SGS+D +IW QT VV
Sbjct: 228 KTYTGHKNEKYCI-FANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTA 286
Query: 665 CHPFDCVVATSGIDN--TIKIW 684
CHP + ++A++ ++N TIK+W
Sbjct: 287 CHPTENIIASAALENDKTIKLW 308
Score = 33.5 bits (75), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 43/83 (51%), Gaps = 2/83 (2%)
Query: 44 RELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVP 103
+ L H V+A+ +N GSL++S S D +W +S + L ++ + V KF P
Sbjct: 143 KTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSP 202
Query: 104 ETSDELVVSGAGDAEVRLFNLSR 126
+ + +++ D ++L++ S+
Sbjct: 203 --NGKYILAATLDNTLKLWDYSK 223
Score = 32.3 bits (72), Expect = 1.00, Method: Compositional matrix adjust.
Identities = 20/73 (27%), Positives = 37/73 (50%), Gaps = 2/73 (2%)
Query: 53 VNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCT-KFVPETSDELVV 111
V+ + ++ G +++ + D + +W YS K L + TGH +C T + +V
Sbjct: 195 VSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTY-TGHKNEKYCIFANFSVTGGKWIV 253
Query: 112 SGAGDAEVRLFNL 124
SG+ D V ++NL
Sbjct: 254 SGSEDNLVYIWNL 266
>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H68|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|3EG6|A Chain A, Structure Of Wdr5 Bound To Mll1 Peptide
pdb|4ERQ|A Chain A, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|B Chain B, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|C Chain C, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERY|A Chain A, X-Ray Structure Of Wdr5-Mll3 Win Motif Peptide Binary
Complex
pdb|4ERZ|A Chain A, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|B Chain B, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|C Chain C, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ES0|A Chain A, X-Ray Structure Of Wdr5-Setd1b Win Motif Peptide Binary
Complex
pdb|4ESG|A Chain A, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4ESG|B Chain B, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4EWR|A Chain A, X-Ray Structure Of Wdr5-Setd1a Win Motif Peptide Binary
Complex
Length = 312
Score = 65.5 bits (158), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 44/138 (31%), Positives = 72/138 (52%), Gaps = 14/138 (10%)
Query: 43 ERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFV 102
E+ + GH+ ++ ++W+S +LL+S SDD + +W SS K L +++ GHS VFC F
Sbjct: 58 EKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLK-GHSNYVFCCNFN 116
Query: 103 PETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHV 162
P+++ L+VSG+ D VR++++ +G+ L + H R L V
Sbjct: 117 PQSN--LIVSGSFDESVRIWDVK--TGKCLKTLPAHSDPVSAVHFNRDGSLIV------- 165
Query: 163 VWSASEDGTLRQHDFRQG 180
S+S DG R D G
Sbjct: 166 --SSSYDGLCRIWDTASG 181
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 41/82 (50%), Gaps = 15/82 (18%)
Query: 617 QRYVGHCNVGTDIKQASFLGQRGDYIASGSDDGRWFIWEKQT------------VVNCVQ 664
+ Y GH N I A+F G +I SGS+D +IW QT VV
Sbjct: 228 KTYTGHKNEKYCI-FANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTA 286
Query: 665 CHPFDCVVATSGIDN--TIKIW 684
CHP + ++A++ ++N TIK+W
Sbjct: 287 CHPTENIIASAALENDKTIKLW 308
Score = 33.5 bits (75), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 43/83 (51%), Gaps = 2/83 (2%)
Query: 44 RELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVP 103
+ L H V+A+ +N GSL++S S D +W +S + L ++ + V KF P
Sbjct: 143 KTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSP 202
Query: 104 ETSDELVVSGAGDAEVRLFNLSR 126
+ + +++ D ++L++ S+
Sbjct: 203 --NGKYILAATLDNTLKLWDYSK 223
Score = 32.3 bits (72), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 20/73 (27%), Positives = 37/73 (50%), Gaps = 2/73 (2%)
Query: 53 VNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCT-KFVPETSDELVV 111
V+ + ++ G +++ + D + +W YS K L + TGH +C T + +V
Sbjct: 195 VSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTY-TGHKNEKYCIFANFSVTGGKWIV 253
Query: 112 SGAGDAEVRLFNL 124
SG+ D V ++NL
Sbjct: 254 SGSEDNLVYIWNL 266
>pdb|2H9L|A Chain A, Wdr5delta23
pdb|2H9P|A Chain A, Wdr5 In Complex With Trimethylated H3k4 Peptide
Length = 329
Score = 65.5 bits (158), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 44/138 (31%), Positives = 72/138 (52%), Gaps = 14/138 (10%)
Query: 43 ERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFV 102
E+ + GH+ ++ ++W+S +LL+S SDD + +W SS K L +++ GHS VFC F
Sbjct: 75 EKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLK-GHSNYVFCCNFN 133
Query: 103 PETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHV 162
P+++ L+VSG+ D VR++++ +G+ L + H R L V
Sbjct: 134 PQSN--LIVSGSFDESVRIWDVK--TGKCLKTLPAHSDPVSAVHFNRDGSLIV------- 182
Query: 163 VWSASEDGTLRQHDFRQG 180
S+S DG R D G
Sbjct: 183 --SSSYDGLCRIWDTASG 198
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 41/82 (50%), Gaps = 15/82 (18%)
Query: 617 QRYVGHCNVGTDIKQASFLGQRGDYIASGSDDGRWFIWEKQT------------VVNCVQ 664
+ Y GH N I A+F G +I SGS+D +IW QT VV
Sbjct: 245 KTYTGHKNEKYCI-FANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTA 303
Query: 665 CHPFDCVVATSGIDN--TIKIW 684
CHP + ++A++ ++N TIK+W
Sbjct: 304 CHPTENIIASAALENDKTIKLW 325
Score = 33.5 bits (75), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 43/83 (51%), Gaps = 2/83 (2%)
Query: 44 RELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVP 103
+ L H V+A+ +N GSL++S S D +W +S + L ++ + V KF P
Sbjct: 160 KTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSP 219
Query: 104 ETSDELVVSGAGDAEVRLFNLSR 126
+ + +++ D ++L++ S+
Sbjct: 220 --NGKYILAATLDNTLKLWDYSK 240
Score = 32.3 bits (72), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 20/73 (27%), Positives = 37/73 (50%), Gaps = 2/73 (2%)
Query: 53 VNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCT-KFVPETSDELVV 111
V+ + ++ G +++ + D + +W YS K L + TGH +C T + +V
Sbjct: 212 VSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTY-TGHKNEKYCIFANFSVTGGKWIV 270
Query: 112 SGAGDAEVRLFNL 124
SG+ D V ++NL
Sbjct: 271 SGSEDNLVYIWNL 283
Score = 28.9 bits (63), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 19/84 (22%), Positives = 44/84 (52%), Gaps = 8/84 (9%)
Query: 44 RELEGHQG---CVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTK 100
+ GH+ C+ A + G ++SGS+D + +W+ +++++ ++ GH+ V T
Sbjct: 245 KTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQ-GHTDVVISTA 303
Query: 101 FVPETSDELVVSGA--GDAEVRLF 122
P ++ ++ S A D ++L+
Sbjct: 304 CHP--TENIIASAALENDKTIKLW 325
>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9M|C Chain C, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9N|A Chain A, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2H9N|C Chain C, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2O9K|A Chain A, Wdr5 In Complex With Dimethylated H3k4 Peptide
pdb|2O9K|C Chain C, Wdr5 In Complex With Dimethylated H3k4 Peptide
Length = 313
Score = 65.5 bits (158), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 44/138 (31%), Positives = 72/138 (52%), Gaps = 14/138 (10%)
Query: 43 ERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFV 102
E+ + GH+ ++ ++W+S +LL+S SDD + +W SS K L +++ GHS VFC F
Sbjct: 59 EKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLK-GHSNYVFCCNFN 117
Query: 103 PETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHV 162
P+++ L+VSG+ D VR++++ +G+ L + H R L V
Sbjct: 118 PQSN--LIVSGSFDESVRIWDVK--TGKCLKTLPAHSDPVSAVHFNRDGSLIV------- 166
Query: 163 VWSASEDGTLRQHDFRQG 180
S+S DG R D G
Sbjct: 167 --SSSYDGLCRIWDTASG 182
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 41/82 (50%), Gaps = 15/82 (18%)
Query: 617 QRYVGHCNVGTDIKQASFLGQRGDYIASGSDDGRWFIWEKQT------------VVNCVQ 664
+ Y GH N I A+F G +I SGS+D +IW QT VV
Sbjct: 229 KTYTGHKNEKYCI-FANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTA 287
Query: 665 CHPFDCVVATSGIDN--TIKIW 684
CHP + ++A++ ++N TIK+W
Sbjct: 288 CHPTENIIASAALENDKTIKLW 309
Score = 33.5 bits (75), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 43/83 (51%), Gaps = 2/83 (2%)
Query: 44 RELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVP 103
+ L H V+A+ +N GSL++S S D +W +S + L ++ + V KF P
Sbjct: 144 KTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSP 203
Query: 104 ETSDELVVSGAGDAEVRLFNLSR 126
+ + +++ D ++L++ S+
Sbjct: 204 --NGKYILAATLDNTLKLWDYSK 224
Score = 32.3 bits (72), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 20/73 (27%), Positives = 37/73 (50%), Gaps = 2/73 (2%)
Query: 53 VNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCT-KFVPETSDELVV 111
V+ + ++ G +++ + D + +W YS K L + TGH +C T + +V
Sbjct: 196 VSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTY-TGHKNEKYCIFANFSVTGGKWIV 254
Query: 112 SGAGDAEVRLFNL 124
SG+ D V ++NL
Sbjct: 255 SGSEDNLVYIWNL 267
>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX
pdb|2H14|A Chain A, Crystal Of Wdr5 (Apo-Form)
pdb|3P4F|A Chain A, Structural And Biochemical Insights Into Mll1 Core Complex
Assembly And Regulation
Length = 317
Score = 65.1 bits (157), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 44/138 (31%), Positives = 72/138 (52%), Gaps = 14/138 (10%)
Query: 43 ERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFV 102
E+ + GH+ ++ ++W+S +LL+S SDD + +W SS K L +++ GHS VFC F
Sbjct: 63 EKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLK-GHSNYVFCCNFN 121
Query: 103 PETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHV 162
P+++ L+VSG+ D VR++++ +G+ L + H R L V
Sbjct: 122 PQSN--LIVSGSFDESVRIWDVK--TGKCLKTLPAHSDPVSAVHFNRDGSLIV------- 170
Query: 163 VWSASEDGTLRQHDFRQG 180
S+S DG R D G
Sbjct: 171 --SSSYDGLCRIWDTASG 186
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 41/82 (50%), Gaps = 15/82 (18%)
Query: 617 QRYVGHCNVGTDIKQASFLGQRGDYIASGSDDGRWFIWEKQT------------VVNCVQ 664
+ Y GH N I A+F G +I SGS+D +IW QT VV
Sbjct: 233 KTYTGHKNEKYCI-FANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTA 291
Query: 665 CHPFDCVVATSGIDN--TIKIW 684
CHP + ++A++ ++N TIK+W
Sbjct: 292 CHPTENIIASAALENDKTIKLW 313
Score = 33.5 bits (75), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 43/83 (51%), Gaps = 2/83 (2%)
Query: 44 RELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVP 103
+ L H V+A+ +N GSL++S S D +W +S + L ++ + V KF P
Sbjct: 148 KTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSP 207
Query: 104 ETSDELVVSGAGDAEVRLFNLSR 126
+ + +++ D ++L++ S+
Sbjct: 208 --NGKYILAATLDNTLKLWDYSK 228
Score = 32.3 bits (72), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 20/73 (27%), Positives = 37/73 (50%), Gaps = 2/73 (2%)
Query: 53 VNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCT-KFVPETSDELVV 111
V+ + ++ G +++ + D + +W YS K L + TGH +C T + +V
Sbjct: 200 VSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTY-TGHKNEKYCIFANFSVTGGKWIV 258
Query: 112 SGAGDAEVRLFNL 124
SG+ D V ++NL
Sbjct: 259 SGSEDNLVYIWNL 271
Score = 28.9 bits (63), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 15/63 (23%), Positives = 36/63 (57%), Gaps = 5/63 (7%)
Query: 62 GSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGA--GDAEV 119
G ++SGS+D + +W+ +++++ ++ GH+ V T P ++ ++ S A D +
Sbjct: 254 GKWIVSGSEDNLVYIWNLQTKEIVQKLQ-GHTDVVISTACHP--TENIIASAALENDKTI 310
Query: 120 RLF 122
+L+
Sbjct: 311 KLW 313
>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y)
Length = 315
Score = 65.1 bits (157), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 44/138 (31%), Positives = 72/138 (52%), Gaps = 14/138 (10%)
Query: 43 ERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFV 102
E+ + GH+ ++ ++W+S +LL+S SDD + +W SS K L +++ GHS VFC F
Sbjct: 61 EKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLK-GHSNYVFCCNFN 119
Query: 103 PETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHV 162
P+++ L+VSG+ D VR++++ +G+ L + H R L V
Sbjct: 120 PQSN--LIVSGSFDESVRIWDVK--TGKCLKTLPAHSDPVSAVHFNRDGSLIV------- 168
Query: 163 VWSASEDGTLRQHDFRQG 180
S+S DG R D G
Sbjct: 169 --SSSYDGLCRIWDTASG 184
Score = 37.4 bits (85), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 41/82 (50%), Gaps = 15/82 (18%)
Query: 617 QRYVGHCNVGTDIKQASFLGQRGDYIASGSDDGRWFIWEKQT------------VVNCVQ 664
+ Y GH N I A+F G +I SGS+D +IW QT VV
Sbjct: 231 KTYTGHKNEKYCI-FANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTA 289
Query: 665 CHPFDCVVATSGIDN--TIKIW 684
CHP + ++A++ ++N TIK++
Sbjct: 290 CHPTENIIASAALENDKTIKLY 311
Score = 33.1 bits (74), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 43/83 (51%), Gaps = 2/83 (2%)
Query: 44 RELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVP 103
+ L H V+A+ +N GSL++S S D +W +S + L ++ + V KF P
Sbjct: 146 KTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSP 205
Query: 104 ETSDELVVSGAGDAEVRLFNLSR 126
+ + +++ D ++L++ S+
Sbjct: 206 --NGKYILAATLDNTLKLWDYSK 226
Score = 32.7 bits (73), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 20/73 (27%), Positives = 37/73 (50%), Gaps = 2/73 (2%)
Query: 53 VNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCT-KFVPETSDELVV 111
V+ + ++ G +++ + D + +W YS K L + TGH +C T + +V
Sbjct: 198 VSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTY-TGHKNEKYCIFANFSVTGGKWIV 256
Query: 112 SGAGDAEVRLFNL 124
SG+ D V ++NL
Sbjct: 257 SGSEDNLVYIWNL 269
Score = 29.3 bits (64), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 19/84 (22%), Positives = 44/84 (52%), Gaps = 8/84 (9%)
Query: 44 RELEGHQG---CVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTK 100
+ GH+ C+ A + G ++SGS+D + +W+ +++++ ++ GH+ V T
Sbjct: 231 KTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQ-GHTDVVISTA 289
Query: 101 FVPETSDELVVSGA--GDAEVRLF 122
P ++ ++ S A D ++L+
Sbjct: 290 CHP--TENIIASAALENDKTIKLY 311
>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f)
Length = 315
Score = 65.1 bits (157), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 44/138 (31%), Positives = 72/138 (52%), Gaps = 14/138 (10%)
Query: 43 ERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFV 102
E+ + GH+ ++ ++W+S +LL+S SDD + +W SS K L +++ GHS VFC F
Sbjct: 61 EKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLK-GHSNYVFCCNFN 119
Query: 103 PETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHV 162
P+++ L+VSG+ D VR++++ +G+ L + H R L V
Sbjct: 120 PQSN--LIVSGSFDESVRIWDVK--TGKCLKTLPAHSDPVSAVHFNRDGSLIV------- 168
Query: 163 VWSASEDGTLRQHDFRQG 180
S+S DG R D G
Sbjct: 169 --SSSYDGLCRIWDTASG 184
Score = 37.0 bits (84), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 40/81 (49%), Gaps = 15/81 (18%)
Query: 617 QRYVGHCNVGTDIKQASFLGQRGDYIASGSDDGRWFIWEKQT------------VVNCVQ 664
+ Y GH N I A+F G +I SGS+D +IW QT VV
Sbjct: 231 KTYTGHKNEKYCI-FANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTA 289
Query: 665 CHPFDCVVATSGIDN--TIKI 683
CHP + ++A++ ++N TIK+
Sbjct: 290 CHPTENIIASAALENDKTIKL 310
Score = 33.1 bits (74), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 43/83 (51%), Gaps = 2/83 (2%)
Query: 44 RELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVP 103
+ L H V+A+ +N GSL++S S D +W +S + L ++ + V KF P
Sbjct: 146 KTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSP 205
Query: 104 ETSDELVVSGAGDAEVRLFNLSR 126
+ + +++ D ++L++ S+
Sbjct: 206 --NGKYILAATLDNTLKLWDYSK 226
Score = 32.3 bits (72), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 20/73 (27%), Positives = 37/73 (50%), Gaps = 2/73 (2%)
Query: 53 VNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCT-KFVPETSDELVV 111
V+ + ++ G +++ + D + +W YS K L + TGH +C T + +V
Sbjct: 198 VSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTY-TGHKNEKYCIFANFSVTGGKWIV 256
Query: 112 SGAGDAEVRLFNL 124
SG+ D V ++NL
Sbjct: 257 SGSEDNLVYIWNL 269
Score = 30.8 bits (68), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 20/84 (23%), Positives = 44/84 (52%), Gaps = 8/84 (9%)
Query: 44 RELEGHQG---CVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTK 100
+ GH+ C+ A + G ++SGS+D + +W+ +++++ ++ GH+ V T
Sbjct: 231 KTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQ-GHTDVVISTA 289
Query: 101 FVPETSDELVVSGA--GDAEVRLF 122
P ++ ++ S A D ++LF
Sbjct: 290 CHP--TENIIASAALENDKTIKLF 311
>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a)
Length = 315
Score = 65.1 bits (157), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 44/138 (31%), Positives = 72/138 (52%), Gaps = 14/138 (10%)
Query: 43 ERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFV 102
E+ + GH+ ++ ++W+S +LL+S SDD + +W SS K L +++ GHS VFC F
Sbjct: 61 EKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLK-GHSNYVFCCNFN 119
Query: 103 PETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHV 162
P+++ L+VSG+ D VR++++ +G+ L + H R L V
Sbjct: 120 PQSN--LIVSGSFDESVRIWDVK--TGKCLKTLPAHSDPVSAVHFNRDGSLIV------- 168
Query: 163 VWSASEDGTLRQHDFRQG 180
S+S DG R D G
Sbjct: 169 --SSSYDGLCRIWDTASG 184
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 41/82 (50%), Gaps = 15/82 (18%)
Query: 617 QRYVGHCNVGTDIKQASFLGQRGDYIASGSDDGRWFIWEKQT------------VVNCVQ 664
+ Y GH N I A+F G +I SGS+D +IW QT VV
Sbjct: 231 KTYTGHKNEKYCI-FANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTA 289
Query: 665 CHPFDCVVATSGIDN--TIKIW 684
CHP + ++A++ ++N TIK+W
Sbjct: 290 CHPTENIIASAALENDKTIKLW 311
Score = 33.1 bits (74), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 43/83 (51%), Gaps = 2/83 (2%)
Query: 44 RELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVP 103
+ L H V+A+ +N GSL++S S D +W +S + L ++ + V KF P
Sbjct: 146 KTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSP 205
Query: 104 ETSDELVVSGAGDAEVRLFNLSR 126
+ + +++ D ++L++ S+
Sbjct: 206 --NGKYILAATLDNTLKLWDYSK 226
Score = 32.3 bits (72), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 20/73 (27%), Positives = 37/73 (50%), Gaps = 2/73 (2%)
Query: 53 VNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCT-KFVPETSDELVV 111
V+ + ++ G +++ + D + +W YS K L + TGH +C T + +V
Sbjct: 198 VSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTY-TGHKNEKYCIFANFSVTGGKWIV 256
Query: 112 SGAGDAEVRLFNL 124
SG+ D V ++NL
Sbjct: 257 SGSEDNLVYIWNL 269
>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 65.1 bits (157), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 31/82 (37%), Positives = 55/82 (67%), Gaps = 3/82 (3%)
Query: 43 ERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFV 102
E+ + GH+ ++ ++W+S +LL+S SDD + +W SS K L +++ GHS VFC F
Sbjct: 61 EKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLK-GHSNYVFCCNFN 119
Query: 103 PETSDELVVSGAGDAEVRLFNL 124
P+++ L+VSG+ D VR++++
Sbjct: 120 PQSN--LIVSGSFDESVRIWDV 139
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 41/82 (50%), Gaps = 15/82 (18%)
Query: 617 QRYVGHCNVGTDIKQASFLGQRGDYIASGSDDGRWFIWEKQT------------VVNCVQ 664
+ Y GH N I A+F G +I SGS+D +IW QT VV
Sbjct: 231 KTYTGHKNEKYCI-FANFSVTGGKWIVSGSEDNMVYIWNLQTKEIVQKLQGHTDVVISTA 289
Query: 665 CHPFDCVVATSGIDN--TIKIW 684
CHP + ++A++ ++N TIK+W
Sbjct: 290 CHPTENIIASAALENDKTIKLW 311
Score = 34.7 bits (78), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 34/137 (24%), Positives = 64/137 (46%), Gaps = 12/137 (8%)
Query: 44 RELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVP 103
+ L+GH V ++N + +L++SGS D + +W + L ++ HS V F
Sbjct: 104 KTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGMCLKTLP-AHSDPVSAVHFNR 162
Query: 104 ETSDELVVSGAGDAEVRLFNLSRFSGRGL-----DDNAITPSALYQCHTRRVKKLAVEVG 158
+ S L+VS + D R+++ + SG+ L DDN + + + + LA +
Sbjct: 163 DGS--LIVSSSYDGLCRIWDTA--SGQCLKTLIDDDNPPVSFVKFSPNGKYI--LAATLD 216
Query: 159 NPHVVWSASEDGTLRQH 175
N +W S+ L+ +
Sbjct: 217 NDLKLWDYSKGKCLKTY 233
Score = 29.6 bits (65), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 15/63 (23%), Positives = 36/63 (57%), Gaps = 5/63 (7%)
Query: 62 GSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGA--GDAEV 119
G ++SGS+D + +W+ +++++ ++ GH+ V T P ++ ++ S A D +
Sbjct: 252 GKWIVSGSEDNMVYIWNLQTKEIVQKLQ-GHTDVVISTACHP--TENIIASAALENDKTI 308
Query: 120 RLF 122
+L+
Sbjct: 309 KLW 311
>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1
Angstrom
pdb|2CO0|C Chain C, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 64.7 bits (156), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 31/82 (37%), Positives = 55/82 (67%), Gaps = 3/82 (3%)
Query: 43 ERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFV 102
E+ + GH+ ++ ++W+S +LL+S SDD + +W SS K L +++ GHS VFC F
Sbjct: 61 EKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLK-GHSNYVFCCNFN 119
Query: 103 PETSDELVVSGAGDAEVRLFNL 124
P+++ L+VSG+ D VR++++
Sbjct: 120 PQSN--LIVSGSFDESVRIWDV 139
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 41/82 (50%), Gaps = 15/82 (18%)
Query: 617 QRYVGHCNVGTDIKQASFLGQRGDYIASGSDDGRWFIWEKQT------------VVNCVQ 664
+ Y GH N I A+F G +I SGS+D +IW QT VV
Sbjct: 231 KTYTGHKNEKYCI-FANFSVTGGKWIVSGSEDNMVYIWNLQTKEIVQKLQGHTDVVISTA 289
Query: 665 CHPFDCVVATSGIDN--TIKIW 684
CHP + ++A++ ++N TIK+W
Sbjct: 290 CHPTENIIASAALENDKTIKLW 311
Score = 35.0 bits (79), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 34/137 (24%), Positives = 64/137 (46%), Gaps = 12/137 (8%)
Query: 44 RELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVP 103
+ L+GH V ++N + +L++SGS D + +W + L ++ HS V F
Sbjct: 104 KTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGMCLKTLP-AHSDPVSAVHFNR 162
Query: 104 ETSDELVVSGAGDAEVRLFNLSRFSGRGL-----DDNAITPSALYQCHTRRVKKLAVEVG 158
+ S L+VS + D R+++ + SG+ L DDN + + + + LA +
Sbjct: 163 DGS--LIVSSSYDGLCRIWDTA--SGQCLKTLIDDDNPPVSFVKFSPNGKYI--LAATLD 216
Query: 159 NPHVVWSASEDGTLRQH 175
N +W S+ L+ +
Sbjct: 217 NTLKLWDYSKGKCLKTY 233
Score = 29.6 bits (65), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 19/84 (22%), Positives = 44/84 (52%), Gaps = 8/84 (9%)
Query: 44 RELEGHQG---CVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTK 100
+ GH+ C+ A + G ++SGS+D + +W+ +++++ ++ GH+ V T
Sbjct: 231 KTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNMVYIWNLQTKEIVQKLQ-GHTDVVISTA 289
Query: 101 FVPETSDELVVSGA--GDAEVRLF 122
P ++ ++ S A D ++L+
Sbjct: 290 CHP--TENIIASAALENDKTIKLW 311
>pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex:
Destruction Motif Binding And Lysine Specificity On The
Scfbeta-Trcp1 Ubiquitin Ligase
Length = 435
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 48/85 (56%), Gaps = 7/85 (8%)
Query: 40 LSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCT 99
++ R L GH+ VN + ++ K ++S S D I VW+ S+ + + ++ GH + C
Sbjct: 246 ITLRRVLVGHRAAVNVVDFDDK--YIVSASGDRTIKVWNTSTCEFVRTLN-GHKRGIACL 302
Query: 100 KFVPETSDELVVSGAGDAEVRLFNL 124
++ D LVVSG+ D +RL+++
Sbjct: 303 QY----RDRLVVSGSSDNTIRLWDI 323
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 43/81 (53%), Gaps = 7/81 (8%)
Query: 44 RELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVP 103
R L GH+ + + + + L++SGS D I +W L +E GH V C +F
Sbjct: 290 RTLNGHKRGIACLQYRDR--LVVSGSSDNTIRLWDIECGACLRVLE-GHEELVRCIRF-- 344
Query: 104 ETSDELVVSGAGDAEVRLFNL 124
++ +VSGA D ++++++L
Sbjct: 345 --DNKRIVSGAYDGKIKVWDL 363
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 32/64 (50%), Gaps = 6/64 (9%)
Query: 64 LLISGSDDTHINVWSYSSRK--LLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRL 121
++++ S D I VW +S L + GH A V F D+ +VS +GD +++
Sbjct: 225 MMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDF----DDKYIVSASGDRTIKV 280
Query: 122 FNLS 125
+N S
Sbjct: 281 WNTS 284
Score = 31.6 bits (70), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 19/86 (22%), Positives = 49/86 (56%), Gaps = 7/86 (8%)
Query: 40 LSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCT 99
L +R L GH G V + ++ + ++I+GS D+ + VW ++ ++L+++ H V
Sbjct: 163 LECKRILTGHTGSVLCLQYDER--VIITGSSDSTVRVWDVNTGEMLNTL-IHHCEAVLHL 219
Query: 100 KFVPETSDELVVSGAGDAEVRLFNLS 125
+F ++ ++V+ + D + +++++
Sbjct: 220 RF----NNGMMVTCSKDRSIAVWDMA 241
>pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure
pdb|2YMU|B Chain B, Structure Of A Highly Repetitive Propeller Structure
Length = 577
Score = 46.6 bits (109), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 47/80 (58%), Gaps = 4/80 (5%)
Query: 44 RELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVP 103
+ L GH V ++++ G + S SDD + +W+ + +LL ++ TGHS++V+ F P
Sbjct: 379 QTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNG-QLLQTL-TGHSSSVWGVAFSP 436
Query: 104 ETSDELVVSGAGDAEVRLFN 123
+ D+ + S + D V+L+N
Sbjct: 437 D--DQTIASASDDKTVKLWN 454
Score = 46.2 bits (108), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 46/80 (57%), Gaps = 4/80 (5%)
Query: 44 RELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVP 103
+ L GH VN +++ G + S SDD + +W+ + +LL ++ TGHS++V+ F P
Sbjct: 256 QTLTGHSSSVNGVAFRPDGQTIASASDDKTVKLWNRNG-QLLQTL-TGHSSSVWGVAFSP 313
Query: 104 ETSDELVVSGAGDAEVRLFN 123
+ + + S + D V+L+N
Sbjct: 314 D--GQTIASASDDKTVKLWN 331
Score = 44.3 bits (103), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 46/80 (57%), Gaps = 4/80 (5%)
Query: 44 RELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVP 103
+ L GH V ++++ G + S SDD + +W+ + +LL ++ TGHS++V+ F P
Sbjct: 502 QTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNG-QLLQTL-TGHSSSVWGVAFSP 559
Query: 104 ETSDELVVSGAGDAEVRLFN 123
+ + + S + D V+L+N
Sbjct: 560 D--GQTIASASSDKTVKLWN 577
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 46/80 (57%), Gaps = 4/80 (5%)
Query: 44 RELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVP 103
+ L GH V ++++ G + S SDD + +W+ + +LL ++ TGHS++V+ F P
Sbjct: 92 QTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNG-QLLQTL-TGHSSSVWGVAFSP 149
Query: 104 ETSDELVVSGAGDAEVRLFN 123
+ + + S + D V+L+N
Sbjct: 150 D--GQTIASASDDKTVKLWN 167
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 47/84 (55%), Gaps = 4/84 (4%)
Query: 40 LSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCT 99
+ + LE H V ++++ G + S SDD + +W+ + +LL ++ TGHS++V+
Sbjct: 6 VKERNRLEAHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNG-QLLQTL-TGHSSSVWGV 63
Query: 100 KFVPETSDELVVSGAGDAEVRLFN 123
F P+ + + S + D V+L+N
Sbjct: 64 AFSPD--GQTIASASDDKTVKLWN 85
Score = 43.1 bits (100), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 46/80 (57%), Gaps = 4/80 (5%)
Query: 44 RELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVP 103
+ L GH V ++++ G + S SDD + +W+ + +LL ++ TGHS++V+ F P
Sbjct: 133 QTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNG-QLLQTL-TGHSSSVWGVAFSP 190
Query: 104 ETSDELVVSGAGDAEVRLFN 123
+ + + S + D V+L+N
Sbjct: 191 D--GQTIASASDDKTVKLWN 208
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 43/80 (53%), Gaps = 4/80 (5%)
Query: 44 RELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVP 103
+ L GH V ++++ G + S SDD + +W+ + + L TGHS++V+ F P
Sbjct: 297 QTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQHL--QTLTGHSSSVWGVAFSP 354
Query: 104 ETSDELVVSGAGDAEVRLFN 123
+ + + S + D V+L+N
Sbjct: 355 D--GQTIASASDDKTVKLWN 372
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 45/80 (56%), Gaps = 4/80 (5%)
Query: 44 RELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVP 103
+ L GH V ++++ G + S SDD + +W+ + +LL ++ TGHS++V F P
Sbjct: 461 QTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNG-QLLQTL-TGHSSSVRGVAFSP 518
Query: 104 ETSDELVVSGAGDAEVRLFN 123
+ + + S + D V+L+N
Sbjct: 519 D--GQTIASASDDKTVKLWN 536
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 45/80 (56%), Gaps = 4/80 (5%)
Query: 44 RELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVP 103
+ L GH V ++++ G + S SDD + +W+ + +LL ++ TGHS++V F P
Sbjct: 215 QTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNG-QLLQTL-TGHSSSVNGVAFRP 272
Query: 104 ETSDELVVSGAGDAEVRLFN 123
+ + + S + D V+L+N
Sbjct: 273 D--GQTIASASDDKTVKLWN 290
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 45/80 (56%), Gaps = 4/80 (5%)
Query: 44 RELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVP 103
+ L GH V ++++ G + S SDD + +W+ + +LL ++ TGHS++V F P
Sbjct: 51 QTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNG-QLLQTL-TGHSSSVRGVAFSP 108
Query: 104 ETSDELVVSGAGDAEVRLFN 123
+ + + S + D V+L+N
Sbjct: 109 D--GQTIASASDDKTVKLWN 126
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 45/80 (56%), Gaps = 4/80 (5%)
Query: 44 RELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVP 103
+ L GH V ++++ G + S SDD + +W+ + +LL ++ TGHS++V F P
Sbjct: 174 QTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNG-QLLQTL-TGHSSSVRGVAFSP 231
Query: 104 ETSDELVVSGAGDAEVRLFN 123
+ + + S + D V+L+N
Sbjct: 232 D--GQTIASASDDKTVKLWN 249
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 45/80 (56%), Gaps = 4/80 (5%)
Query: 44 RELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVP 103
+ L GH V ++++ G + S SDD + +W+ + +LL ++ TGHS++V F P
Sbjct: 338 QTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNG-QLLQTL-TGHSSSVRGVAFSP 395
Query: 104 ETSDELVVSGAGDAEVRLFN 123
+ + + S + D V+L+N
Sbjct: 396 D--GQTIASASDDKTVKLWN 413
Score = 37.7 bits (86), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 44/80 (55%), Gaps = 4/80 (5%)
Query: 44 RELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVP 103
+ L GH V ++++ + S SDD + +W+ + +LL ++ TGHS++V F P
Sbjct: 420 QTLTGHSSSVWGVAFSPDDQTIASASDDKTVKLWNRNG-QLLQTL-TGHSSSVRGVAFSP 477
Query: 104 ETSDELVVSGAGDAEVRLFN 123
+ + + S + D V+L+N
Sbjct: 478 D--GQTIASASDDKTVKLWN 495
Score = 32.3 bits (72), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 31/104 (29%), Positives = 45/104 (43%), Gaps = 19/104 (18%)
Query: 639 GDYIASGSDDGRWFIWEK-----QTV------VNCVQCHPFDCVVATSGIDNTIKIWTPS 687
G IAS SDD +W + QT+ VN V P +A++ D T+K+W +
Sbjct: 233 GQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVNGVAFRPDGQTIASASDDKTVKLWNRN 292
Query: 688 ASV-------PSIVSGGAAGPDTADVLEAMESNQRKL-SRNREH 723
+ S V G A PD + A + KL +RN +H
Sbjct: 293 GQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQH 336
Score = 29.3 bits (64), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 34/119 (28%), Positives = 48/119 (40%), Gaps = 23/119 (19%)
Query: 639 GDYIASGSDDGRWFIWEK-----QTV------VNCVQCHPFDCVVATSGIDNTIKIWTPS 687
G IAS SDD +W + QT+ V V P D +A++ D T+K+W +
Sbjct: 397 GQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDDQTIASASDDKTVKLWNRN 456
Query: 688 ASV-------PSIVSGGAAGPDTADVLEAMESNQRKLSRNREHSLSYELLERFHMHEFS 739
+ S V G A PD + A + KL NR +LL+ H S
Sbjct: 457 GQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKL-WNRNG----QLLQTLTGHSSS 510
>pdb|3IZ6|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s
Ribosome
Length = 380
Score = 45.8 bits (107), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 51/207 (24%), Positives = 84/207 (40%), Gaps = 32/207 (15%)
Query: 44 RELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVP 103
R L+GH G V ++ W + + ++S S D + VW+ + + H+I+ H V F P
Sbjct: 60 RTLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAIKL-HCPWVMECAFAP 118
Query: 104 ETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVV 163
+ + V G D+ +FNLS + R D + S + H
Sbjct: 119 --NGQSVACGGLDSACSIFNLSSQADR---DGNMPVSRVLTGHKGY-------------- 159
Query: 164 WSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLAD---PPKQTLSLKS 220
AS + + R GS Q C +L D+ G + S+ P T + S
Sbjct: 160 --ASSCQYVPDQETRL-----ITGSGDQTC--VLWDVTTGQRISIFGSEFPSGHTADVLS 210
Query: 221 CDISSTRPHLLLVGGSDAFARLYDRRM 247
I+S ++ + G D RL+D R+
Sbjct: 211 LSINSLNANMFISGSCDTTVRLWDLRI 237
Score = 33.5 bits (75), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 34/142 (23%), Positives = 63/142 (44%), Gaps = 16/142 (11%)
Query: 44 RELEGHQGCVNAISW-NSKGSLLISGSDDTHINVWSYSSRKLLH----SIETGHSANVFC 98
R L GH+G ++ + + + LI+GS D +W ++ + + +GH+A+V
Sbjct: 151 RVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLS 210
Query: 99 TKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVG 158
+ + + +SG+ D VRL++L R + R + Y H + +
Sbjct: 211 LS-INSLNANMFISGSCDTTVRLWDL-RITSRAV--------RTYHGHEGDINSVKF-FP 259
Query: 159 NPHVVWSASEDGTLRQHDFRQG 180
+ + S+DGT R D R G
Sbjct: 260 DGQRFGTGSDDGTCRLFDMRTG 281
Score = 29.3 bits (64), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 26/38 (68%), Gaps = 1/38 (2%)
Query: 49 HQGCVNAISWNSKGSLLISGSDDTHINVWSYSS-RKLL 85
H+G ++ + +S GS L +GS D ++ +W++S RK++
Sbjct: 343 HEGRISCLGLSSDGSALCTGSWDKNLKIWAFSGHRKIV 380
>pdb|4AEZ|A Chain A, Crystal Structure Of Mitotic Checkpoint Complex
pdb|4AEZ|D Chain D, Crystal Structure Of Mitotic Checkpoint Complex
pdb|4AEZ|G Chain G, Crystal Structure Of Mitotic Checkpoint Complex
Length = 401
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 34/138 (24%), Positives = 59/138 (42%), Gaps = 3/138 (2%)
Query: 42 QERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKF 101
Q L+GH V ++W S G L SG +D + +W S + +T H+A V +
Sbjct: 209 QIGTLQGHSSEVCGLAWRSDGLQLASGGNDNVVQIWDARS-SIPKFTKTNHNAAVKAVAW 267
Query: 102 VPETSDELVVSGAG-DAEVRLFNLSRFSG-RGLDDNAITPSALYQCHTRRVKKLAVEVGN 159
P S+ L G D ++ +N + + +D + S ++ H++ + N
Sbjct: 268 CPWQSNLLATGGGTMDKQIHFWNAATGARVNTVDAGSQVTSLIWSPHSKEIMSTHGFPDN 327
Query: 160 PHVVWSASEDGTLRQHDF 177
+WS S G +Q D
Sbjct: 328 NLSIWSYSSSGLTKQVDI 345
>pdb|3GFC|A Chain A, Crystal Structure Of Histone-Binding Protein Rbbp4
pdb|2XU7|A Chain A, Structural Basis For Rbap48 Binding To Fog-1
pdb|2XU7|B Chain B, Structural Basis For Rbap48 Binding To Fog-1
Length = 425
Score = 43.9 bits (102), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 45/180 (25%), Positives = 78/180 (43%), Gaps = 26/180 (14%)
Query: 17 TRHTDTRPDVNHSLQMHSSLVRRLSQEREL-----------------EGHQGCVNAISWN 59
T HT DV+ L +H SL ++ +++L + H VN +S+N
Sbjct: 224 TGHTAVVEDVSWHL-LHESLFGSVADDQKLMIWDTRSNNTSKPSHSVDAHTAEVNCLSFN 282
Query: 60 SKGS-LLISGSDDTHINVWSYSSRKL-LHSIETGHSANVFCTKFVPETSDELVVSGAGDA 117
+L +GS D + +W + KL LHS E+ H +F ++ P L SG D
Sbjct: 283 PYSEFILATGSADKTVALWDLRNLKLKLHSFES-HKDEIFQVQWSPHNETILASSGT-DR 340
Query: 118 EVRLFNLSRF----SGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLR 173
+ +++LS+ S +D ++ HT ++ + P V+ S SED ++
Sbjct: 341 RLNVWDLSKIGEEQSPEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQ 400
Score = 30.4 bits (67), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 39/140 (27%), Positives = 61/140 (43%), Gaps = 15/140 (10%)
Query: 46 LEGHQGCVNAISWNSKGS-LLISGSDDTHINVWSYSSR----KLL--HSIETGHSANVFC 98
L GHQ +SWN S L+S SDD I +W S+ K++ +I TGH+A V
Sbjct: 173 LRGHQKEGYGLSWNPNLSGHLLSASDDHTICLWDISAVPKEGKVVDAKTIFTGHTAVVED 232
Query: 99 TKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVG 158
+ + L S A D ++ +++ +N PS HT V L+
Sbjct: 233 VSW-HLLHESLFGSVADDQKLMIWDTRS-------NNTSKPSHSVDAHTAEVNCLSFNPY 284
Query: 159 NPHVVWSASEDGTLRQHDFR 178
+ ++ + S D T+ D R
Sbjct: 285 SEFILATGSADKTVALWDLR 304
>pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|B Chain B, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|C Chain C, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
Length = 393
Score = 43.9 bits (102), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 44/72 (61%), Gaps = 3/72 (4%)
Query: 53 VNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVS 112
+ ++ ++ G L +G++D I +W +RK++ ++ GH +++ + P S + +VS
Sbjct: 126 IRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQ-GHEQDIYSLDYFP--SGDKLVS 182
Query: 113 GAGDAEVRLFNL 124
G+GD VR+++L
Sbjct: 183 GSGDRTVRIWDL 194
Score = 33.9 bits (76), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 32/134 (23%), Positives = 53/134 (39%), Gaps = 20/134 (14%)
Query: 36 LVRRLSQEREL-EGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSA 94
LV RL E E GH+ V ++ + G ++SGS D + +W+ + +T +S
Sbjct: 241 LVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSG 300
Query: 95 NV---------FCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQC 145
F +DE ++SG+ D V + D + P + Q
Sbjct: 301 TCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFW----------DKKSGNPLLMLQG 350
Query: 146 HTRRVKKLAVEVGN 159
H V +AV G+
Sbjct: 351 HRNSVISVAVANGS 364
Score = 30.4 bits (67), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 21/80 (26%), Positives = 39/80 (48%), Gaps = 7/80 (8%)
Query: 46 LEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRK--LLHSIETGHSANVFCTKFVP 103
L+GH+ + ++ + G L+SGS D + +W + + L SIE G T V
Sbjct: 161 LQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDG-----VTTVAVS 215
Query: 104 ETSDELVVSGAGDAEVRLFN 123
+ + +G+ D VR+++
Sbjct: 216 PGDGKYIAAGSLDRAVRVWD 235
>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length Murine
Apaf-1
Length = 1256
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 30/48 (62%)
Query: 40 LSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHS 87
LS EL+GH GCV +++ G LL +G D+ I +W+ S +LLHS
Sbjct: 1124 LSPLHELKGHNGCVRCSAFSLDGILLATGDDNGEIRIWNVSDGQLLHS 1171
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/137 (24%), Positives = 67/137 (48%), Gaps = 12/137 (8%)
Query: 45 ELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPE 104
+++ H+ V +++S S + + S D + +W ++ KL+H+ + HS V C F +
Sbjct: 659 DIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSATGKLVHTYDE-HSEQVNCCHFTNK 717
Query: 105 TSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVW 164
++ L+ +G+ D ++L++L++ R N + HT V + ++
Sbjct: 718 SNHLLLATGSNDFFLKLWDLNQKECR----NTMFG------HTNSVNHCRFS-PDDELLA 766
Query: 165 SASEDGTLRQHDFRQGS 181
S S DGTLR D R +
Sbjct: 767 SCSADGTLRLWDVRSAN 783
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 44/83 (53%), Gaps = 3/83 (3%)
Query: 43 ERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFV 102
ER+ HQG V + + +S + S S D +WS+ LH ++ GH+ V C+ F
Sbjct: 1085 ERDFTCHQGTVLSCAISSDATKFSSTSADKTAKIWSFDLLSPLHELK-GHNGCVRCSAFS 1143
Query: 103 PETSDELVVSGAGDAEVRLFNLS 125
+ L+ +G + E+R++N+S
Sbjct: 1144 LDGI--LLATGDDNGEIRIWNVS 1164
Score = 31.6 bits (70), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 40/83 (48%), Gaps = 7/83 (8%)
Query: 48 GHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSD 107
GH+ V I + + G LIS S+D+ I VW++ + + H V K D
Sbjct: 1008 GHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGD--YVFLQAHQETV---KDFRLLQD 1062
Query: 108 ELVVSGAGDAEVRLFNLSRFSGR 130
++S + D V+++N+ +GR
Sbjct: 1063 SRLLSWSFDGTVKVWNV--ITGR 1083
>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1
Length = 1249
Score = 43.5 bits (101), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 30/48 (62%)
Query: 40 LSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHS 87
LS EL+GH GCV +++ G LL +G D+ I +W+ S +LLHS
Sbjct: 1117 LSPLHELKGHNGCVRCSAFSLDGILLATGDDNGEIRIWNVSDGQLLHS 1164
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/137 (24%), Positives = 67/137 (48%), Gaps = 12/137 (8%)
Query: 45 ELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPE 104
+++ H+ V +++S S + + S D + +W ++ KL+H+ + HS V C F +
Sbjct: 652 DIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSATGKLVHTYDE-HSEQVNCCHFTNK 710
Query: 105 TSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVW 164
++ L+ +G+ D ++L++L++ R N + HT V + ++
Sbjct: 711 SNHLLLATGSNDFFLKLWDLNQKECR----NTMFG------HTNSVNHCRFS-PDDELLA 759
Query: 165 SASEDGTLRQHDFRQGS 181
S S DGTLR D R +
Sbjct: 760 SCSADGTLRLWDVRSAN 776
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 44/83 (53%), Gaps = 3/83 (3%)
Query: 43 ERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFV 102
ER+ HQG V + + +S + S S D +WS+ LH ++ GH+ V C+ F
Sbjct: 1078 ERDFTCHQGTVLSCAISSDATKFSSTSADKTAKIWSFDLLSPLHELK-GHNGCVRCSAFS 1136
Query: 103 PETSDELVVSGAGDAEVRLFNLS 125
+ L+ +G + E+R++N+S
Sbjct: 1137 LDGI--LLATGDDNGEIRIWNVS 1157
Score = 31.6 bits (70), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 40/83 (48%), Gaps = 7/83 (8%)
Query: 48 GHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSD 107
GH+ V I + + G LIS S+D+ I VW++ + + H V K D
Sbjct: 1001 GHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGD--YVFLQAHQETV---KDFRLLQD 1055
Query: 108 ELVVSGAGDAEVRLFNLSRFSGR 130
++S + D V+++N+ +GR
Sbjct: 1056 SRLLSWSFDGTVKVWNV--ITGR 1076
>pdb|2OVP|B Chain B, Structure Of The Skp1-Fbw7 Complex
pdb|2OVQ|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegc Complex
pdb|2OVR|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegn Complex
Length = 445
Score = 43.1 bits (100), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 50/180 (27%), Positives = 82/180 (45%), Gaps = 45/180 (25%)
Query: 44 RELEGHQGCVNAISWNS--KGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKF 101
R L GH G V W+S + +++ISGS D + VW+ + + +H++ GH++ V C
Sbjct: 153 RTLVGHTGGV----WSSQMRDNIIISGSTDRTLKVWNAETGECIHTLY-GHTSTVRCMHL 207
Query: 102 VPETSDELVVSGAGDAEVRLFNLS------------------RFSGRGLDDNAI------ 137
++ VVSG+ DA +R++++ ++ GR + A
Sbjct: 208 ----HEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKV 263
Query: 138 ----TPSALY--QCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQ 191
T + L+ Q HT RV L + HVV S S D ++R D G +C + HQ
Sbjct: 264 WDPETETCLHTLQGHTNRVYSLQFD--GIHVV-SGSLDTSIRVWDVETG-NCIHTLTGHQ 319
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 34/119 (28%), Positives = 57/119 (47%), Gaps = 18/119 (15%)
Query: 62 GSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRL 121
G+ ++SGSDD + VWS + K L ++ GH+ V+ ++ D +++SG+ D +++
Sbjct: 129 GNRIVSGSDDNTLKVWSAVTGKCLRTL-VGHTGGVWSSQM----RDNIIISGSTDRTLKV 183
Query: 122 FNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQG 180
+N + LY HT V+ + + VV S S D TLR D G
Sbjct: 184 WNA---------ETGECIHTLYG-HTSTVR--CMHLHEKRVV-SGSRDATLRVWDIETG 229
Score = 39.7 bits (91), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 35/135 (25%), Positives = 66/135 (48%), Gaps = 17/135 (12%)
Query: 46 LEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPET 105
L+GH V ++ ++ G ++SGS DT I VW + +H++ TGH + E
Sbjct: 275 LQGHTNRVYSLQFD--GIHVVSGSLDTSIRVWDVETGNCIHTL-TGHQS----LTSGMEL 327
Query: 106 SDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWS 165
D ++VSG D+ V+++++ +G+ L Q + + N + V +
Sbjct: 328 KDNILVSGNADSTVKIWDIK--TGQCLQT--------LQGPNKHQSAVTCLQFNKNFVIT 377
Query: 166 ASEDGTLRQHDFRQG 180
+S+DGT++ D + G
Sbjct: 378 SSDDGTVKLWDLKTG 392
>pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An
80s Complex Obtained By Docking Homology Models Of The
Rna And Proteins Into An 8.7 A Cryo-Em Map
Length = 317
Score = 42.7 bits (99), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 44/85 (51%)
Query: 41 SQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTK 100
+ R GH V +++++S ++SGS D I +W+ + HS V C +
Sbjct: 96 TTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVR 155
Query: 101 FVPETSDELVVSGAGDAEVRLFNLS 125
F P +S+ ++VS D V+++NL+
Sbjct: 156 FSPNSSNPIIVSCGWDKLVKVWNLA 180
Score = 36.2 bits (82), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 40/81 (49%), Gaps = 3/81 (3%)
Query: 43 ERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFV 102
+R L GH V+ + +S G +SGS D + +W ++ GH+ +V F
Sbjct: 56 QRALRGHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRF-VGHTKDVLSVAF- 113
Query: 103 PETSDELVVSGAGDAEVRLFN 123
+ + +VSG+ D ++L+N
Sbjct: 114 -SSDNRQIVSGSRDKTIKLWN 133
Score = 33.1 bits (74), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 26/51 (50%)
Query: 48 GHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFC 98
GH G +N ++ + GSL SG D +W + K L++++ G N C
Sbjct: 190 GHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGGDIINALC 240
>pdb|2YBA|A Chain A, Crystal Structure Of Nurf55 In Complex With Histone H3
pdb|2YBA|B Chain B, Crystal Structure Of Nurf55 In Complex With Histone H3
pdb|2YB8|B Chain B, Crystal Structure Of Nurf55 In Complex With Su(Z)12
Length = 422
Score = 42.7 bits (99), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 44/180 (24%), Positives = 77/180 (42%), Gaps = 26/180 (14%)
Query: 17 TRHTDTRPDVNHSLQMHSSLVRRLSQEREL-----------------EGHQGCVNAISWN 59
T HT DV L +H SL ++ +++L + H VN +S+N
Sbjct: 232 TGHTAVVEDVAWHL-LHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFN 290
Query: 60 SKGS-LLISGSDDTHINVWSYSSRKL-LHSIETGHSANVFCTKFVPETSDELVVSGAGDA 117
+L +GS D + +W + KL LHS E+ H +F ++ P L SG D
Sbjct: 291 PYSEFILATGSADKTVALWDLRNLKLKLHSFES-HKDEIFQVQWSPHNETILASSGT-DR 348
Query: 118 EVRLFNLSRF----SGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLR 173
+ +++LS+ S +D ++ HT ++ + P ++ S SED ++
Sbjct: 349 RLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQ 408
Score = 33.5 bits (75), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 38/142 (26%), Positives = 60/142 (42%), Gaps = 19/142 (13%)
Query: 46 LEGHQGCVNAISWNSK-GSLLISGSDDTHINVWSYSSRKLLH------SIETGHSANV-- 96
L GHQ +SWN L+S SDD I +W ++ H +I TGH+A V
Sbjct: 181 LRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVED 240
Query: 97 FCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVE 156
+ E+ L S A D ++ +++ ++N PS HT V L+
Sbjct: 241 VAWHLLHES---LFGSVADDQKLMIWDTR-------NNNTSKPSHTVDAHTAEVNCLSFN 290
Query: 157 VGNPHVVWSASEDGTLRQHDFR 178
+ ++ + S D T+ D R
Sbjct: 291 PYSEFILATGSADKTVALWDLR 312
>pdb|2XYI|A Chain A, Crystal Structure Of Nurf55 In Complex With A H4 Peptide
Length = 430
Score = 42.4 bits (98), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 44/180 (24%), Positives = 77/180 (42%), Gaps = 26/180 (14%)
Query: 17 TRHTDTRPDVNHSLQMHSSLVRRLSQEREL-----------------EGHQGCVNAISWN 59
T HT DV L +H SL ++ +++L + H VN +S+N
Sbjct: 228 TGHTAVVEDVAWHL-LHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFN 286
Query: 60 SKGS-LLISGSDDTHINVWSYSSRKL-LHSIETGHSANVFCTKFVPETSDELVVSGAGDA 117
+L +GS D + +W + KL LHS E+ H +F ++ P L SG D
Sbjct: 287 PYSEFILATGSADKTVALWDLRNLKLKLHSFES-HKDEIFQVQWSPHNETILASSGT-DR 344
Query: 118 EVRLFNLSRF----SGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLR 173
+ +++LS+ S +D ++ HT ++ + P ++ S SED ++
Sbjct: 345 RLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQ 404
Score = 33.5 bits (75), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 38/142 (26%), Positives = 60/142 (42%), Gaps = 19/142 (13%)
Query: 46 LEGHQGCVNAISWNSK-GSLLISGSDDTHINVWSYSSRKLLH------SIETGHSANV-- 96
L GHQ +SWN L+S SDD I +W ++ H +I TGH+A V
Sbjct: 177 LRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVED 236
Query: 97 FCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVE 156
+ E+ L S A D ++ +++ ++N PS HT V L+
Sbjct: 237 VAWHLLHES---LFGSVADDQKLMIWDTR-------NNNTSKPSHTVDAHTAEVNCLSFN 286
Query: 157 VGNPHVVWSASEDGTLRQHDFR 178
+ ++ + S D T+ D R
Sbjct: 287 PYSEFILATGSADKTVALWDLR 308
>pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|B Chain B, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|C Chain C, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
Length = 340
Score = 42.4 bits (98), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 44/85 (51%)
Query: 41 SQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTK 100
+ R GH V +++++S ++SGS D I +W+ + HS V C +
Sbjct: 119 TTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVR 178
Query: 101 FVPETSDELVVSGAGDAEVRLFNLS 125
F P +S+ ++VS D V+++NL+
Sbjct: 179 FSPNSSNPIIVSCGWDKLVKVWNLA 203
Score = 36.2 bits (82), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 40/81 (49%), Gaps = 3/81 (3%)
Query: 43 ERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFV 102
+R L GH V+ + +S G +SGS D + +W ++ GH+ +V F
Sbjct: 79 QRALRGHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRF-VGHTKDVLSVAF- 136
Query: 103 PETSDELVVSGAGDAEVRLFN 123
+ + +VSG+ D ++L+N
Sbjct: 137 -SSDNRQIVSGSRDKTIKLWN 156
Score = 33.1 bits (74), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 26/51 (50%)
Query: 48 GHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFC 98
GH G +N ++ + GSL SG D +W + K L++++ G N C
Sbjct: 213 GHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGGDIINALC 263
>pdb|3C99|A Chain A, Structural Basis Of Histone H4 Recognition By P55
pdb|3C9C|A Chain A, Structural Basis Of Histone H4 Recognition By P55
Length = 432
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 44/180 (24%), Positives = 77/180 (42%), Gaps = 26/180 (14%)
Query: 17 TRHTDTRPDVNHSLQMHSSLVRRLSQEREL-----------------EGHQGCVNAISWN 59
T HT DV L +H SL ++ +++L + H VN +S+N
Sbjct: 230 TGHTAVVEDVAWHL-LHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFN 288
Query: 60 SKGS-LLISGSDDTHINVWSYSSRKL-LHSIETGHSANVFCTKFVPETSDELVVSGAGDA 117
+L +GS D + +W + KL LHS E+ H +F ++ P L SG D
Sbjct: 289 PYSEFILATGSADKTVALWDLRNLKLKLHSFES-HKDEIFQVQWSPHNETILASSGT-DR 346
Query: 118 EVRLFNLSRF----SGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLR 173
+ +++LS+ S +D ++ HT ++ + P ++ S SED ++
Sbjct: 347 RLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQ 406
Score = 33.5 bits (75), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 38/142 (26%), Positives = 60/142 (42%), Gaps = 19/142 (13%)
Query: 46 LEGHQGCVNAISWNSK-GSLLISGSDDTHINVWSYSSRKLLH------SIETGHSANV-- 96
L GHQ +SWN L+S SDD I +W ++ H +I TGH+A V
Sbjct: 179 LRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVED 238
Query: 97 FCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVE 156
+ E+ L S A D ++ +++ ++N PS HT V L+
Sbjct: 239 VAWHLLHES---LFGSVADDQKLMIWDTR-------NNNTSKPSHTVDAHTAEVNCLSFN 288
Query: 157 VGNPHVVWSASEDGTLRQHDFR 178
+ ++ + S D T+ D R
Sbjct: 289 PYSEFILATGSADKTVALWDLR 310
>pdb|3ZEY|7 Chain 7, High-resolution Cryo-electron Microscopy Structure Of The
Trypanosoma Brucei Ribosome
Length = 318
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 37/157 (23%), Positives = 75/157 (47%), Gaps = 15/157 (9%)
Query: 27 NHSLQMHSSLVRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLH 86
+HSL++ + ++ + + GH V +++++ ++SG D + VW+ + +H
Sbjct: 88 DHSLRLWN--LQNGQCQYKFLGHTKDVLSVAFSPDNRQIVSGGRDNALRVWNVKG-ECMH 144
Query: 87 SIETG-HSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQC 145
++ G H+ V C +F P ++VSG D V++++L+ +GR + D +
Sbjct: 145 TLSRGAHTDWVSCVRFSPSLDAPVIVSGGWDNLVKVWDLA--TGRLVTD--------LKG 194
Query: 146 HTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSS 182
HT V + V S+ +DG R D +G +
Sbjct: 195 HTNYVTSVTVSPDGSLCA-SSDKDGVARLWDLTKGEA 230
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 48/92 (52%), Gaps = 3/92 (3%)
Query: 33 HSSLVRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGH 92
HSS +R LEGH V+ ++ ++ G+ +S S D + +W+ + + + GH
Sbjct: 50 HSSECSYGLPDRRLEGHSAFVSDVALSNNGNFAVSASWDHSLRLWNLQNGQCQYKF-LGH 108
Query: 93 SANVFCTKFVPETSDELVVSGAGDAEVRLFNL 124
+ +V F P+ + +VSG D +R++N+
Sbjct: 109 TKDVLSVAFSPD--NRQIVSGGRDNALRVWNV 138
Score = 29.3 bits (64), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 20/80 (25%), Positives = 36/80 (45%), Gaps = 5/80 (6%)
Query: 45 ELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPE 104
+L+GH V +++ + GSL S D +W + + L + G N C F P
Sbjct: 191 DLKGHTNYVTSVTVSPDGSLCASSDKDGVARLWDLTKGEALSEMAAGAPINQIC--FSP- 247
Query: 105 TSDELVVSGAGDAEVRLFNL 124
+ + A + +R+F+L
Sbjct: 248 --NRYWMCAATEKGIRIFDL 265
>pdb|3MKS|B Chain B, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3MKS|D Chain D, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3V7D|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
pdb|3V7D|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
Length = 464
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 43/82 (52%), Gaps = 2/82 (2%)
Query: 45 ELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPE 104
+L GH G V A+ + + G +L+SGS D + VW H E GH++ V C V
Sbjct: 157 QLSGHDGGVWALKY-AHGGILVSGSTDRTVRVWDIKKGCCTHVFE-GHNSTVRCLDIVEY 214
Query: 105 TSDELVVSGAGDAEVRLFNLSR 126
+ + +V+G+ D + ++ L +
Sbjct: 215 KNIKYIVTGSRDNTLHVWKLPK 236
Score = 37.0 bits (84), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 37/131 (28%), Positives = 64/131 (48%), Gaps = 18/131 (13%)
Query: 46 LEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPET 105
L GH V +S G++++SGS D + VW + K L+ I +GH+ ++ T + E
Sbjct: 266 LRGHMASVRTVS--GHGNIVVSGSYDNTLIVWDVAQMKCLY-ILSGHTDRIYSTIYDHER 322
Query: 106 SDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWS 165
+ +S + D +R+++L +N L Q HT V L + + +V S
Sbjct: 323 --KRCISASMDTTIRIWDL---------ENGELMYTL-QGHTALVGLL--RLSDKFLV-S 367
Query: 166 ASEDGTLRQHD 176
A+ DG++R D
Sbjct: 368 AAADGSIRGWD 378
Score = 35.8 bits (81), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 45/83 (54%), Gaps = 5/83 (6%)
Query: 46 LEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPET 105
L GH + + ++ + IS S DT I +W + +L+++++ GH+A V +
Sbjct: 306 LSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQ-GHTALVGLLRL---- 360
Query: 106 SDELVVSGAGDAEVRLFNLSRFS 128
SD+ +VS A D +R ++ + +S
Sbjct: 361 SDKFLVSAAADGSIRGWDANDYS 383
>pdb|1NEX|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
pdb|1NEX|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
Length = 464
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 43/82 (52%), Gaps = 2/82 (2%)
Query: 45 ELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPE 104
+L GH G V A+ + + G +L+SGS D + VW H E GH++ V C V
Sbjct: 157 QLSGHDGGVWALKY-AHGGILVSGSTDRTVRVWDIKKGCCTHVFE-GHNSTVRCLDIVEY 214
Query: 105 TSDELVVSGAGDAEVRLFNLSR 126
+ + +V+G+ D + ++ L +
Sbjct: 215 KNIKYIVTGSRDNTLHVWKLPK 236
Score = 39.3 bits (90), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 38/150 (25%), Positives = 66/150 (44%), Gaps = 16/150 (10%)
Query: 42 QERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKF 101
Q L GH V + + +I+G+DD I V+ ++K L + +GH V+ K+
Sbjct: 113 QRTTLRGHXTSV-ITCLQFEDNYVITGADDKXIRVYDSINKKFLLQL-SGHDGGVWALKY 170
Query: 102 VPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKL-AVEVGNP 160
++VSG+ D VR++++ + + +++ H V+ L VE N
Sbjct: 171 ---AHGGILVSGSTDRTVRVWDIKKGC----------CTHVFEGHNSTVRCLDIVEYKNI 217
Query: 161 HVVWSASEDGTLRQHDFRQGSSCPPAGSSH 190
+ + S D TL + SS P G H
Sbjct: 218 KYIVTGSRDNTLHVWKLPKESSVPDHGEEH 247
Score = 37.4 bits (85), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 37/131 (28%), Positives = 64/131 (48%), Gaps = 18/131 (13%)
Query: 46 LEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPET 105
L GH V +S G++++SGS D + VW + K L+ I +GH+ ++ T + E
Sbjct: 266 LRGHXASVRTVS--GHGNIVVSGSYDNTLIVWDVAQXKCLY-ILSGHTDRIYSTIYDHER 322
Query: 106 SDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWS 165
+ +S + D +R+++L +N L Q HT V L + + +V S
Sbjct: 323 --KRCISASXDTTIRIWDL---------ENGELXYTL-QGHTALVGLL--RLSDKFLV-S 367
Query: 166 ASEDGTLRQHD 176
A+ DG++R D
Sbjct: 368 AAADGSIRGWD 378
Score = 35.0 bits (79), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 44/83 (53%), Gaps = 5/83 (6%)
Query: 46 LEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPET 105
L GH + + ++ + IS S DT I +W + +L ++++ GH+A V +
Sbjct: 306 LSGHTDRIYSTIYDHERKRCISASXDTTIRIWDLENGELXYTLQ-GHTALVGLLRL---- 360
Query: 106 SDELVVSGAGDAEVRLFNLSRFS 128
SD+ +VS A D +R ++ + +S
Sbjct: 361 SDKFLVSAAADGSIRGWDANDYS 383
>pdb|3CFS|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
Length = 414
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/134 (25%), Positives = 61/134 (45%), Gaps = 8/134 (5%)
Query: 46 LEGHQGCVNAISWNSKGS-LLISGSDDTHINVWSYSSRKL-LHSIETGHSANVFCTKFVP 103
++ H VN +S+N +L +GS D + +W + KL LH+ E+ H +F + P
Sbjct: 271 VDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHTFES-HKDEIFQVHWSP 329
Query: 104 ETSDELVVSGAGDAEVRLFNLSRF----SGRGLDDNAITPSALYQCHTRRVKKLAVEVGN 159
L SG D + +++LS+ S +D ++ HT ++ +
Sbjct: 330 HNETILASSGT-DRRLNVWDLSKIGEEQSAEDAEDGPPELLFIHGGHTAKISDFSWNPNE 388
Query: 160 PHVVWSASEDGTLR 173
P V+ S SED ++
Sbjct: 389 PWVICSVSEDNIMQ 402
Score = 31.6 bits (70), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 40/142 (28%), Positives = 63/142 (44%), Gaps = 19/142 (13%)
Query: 46 LEGHQGCVNAISWNSKGS-LLISGSDDTHINVWSYSS----RKLL--HSIETGHSANV-- 96
L GHQ +SWNS S L+S SDD + +W ++ K++ +I TGHSA V
Sbjct: 175 LRGHQKEGYGLSWNSNLSGHLLSASDDHTVCLWDINAGPKEGKIVDAKAIFTGHSAVVED 234
Query: 97 FCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVE 156
+ E+ L S A D ++ +++ + PS L HT V L+
Sbjct: 235 VAWHLLHES---LFGSVADDQKLMIWDTRS-------NTTSKPSHLVDAHTAEVNCLSFN 284
Query: 157 VGNPHVVWSASEDGTLRQHDFR 178
+ ++ + S D T+ D R
Sbjct: 285 PYSEFILATGSADKTVALWDLR 306
>pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|D Chain D, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|G Chain G, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|H Chain H, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|K Chain K, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|L Chain L, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|O Chain O, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|P Chain P, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|S Chain S, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|T Chain T, Paf-Ah Holoenzyme: Lis1ALFA2
Length = 410
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 43/82 (52%), Gaps = 3/82 (3%)
Query: 43 ERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFV 102
ER L+GH V IS++ G LL S S D I +W + + + ++ GH NV +
Sbjct: 143 ERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMH-GHDHNVSSVSIM 201
Query: 103 PETSDELVVSGAGDAEVRLFNL 124
P + + +VS + D ++++ +
Sbjct: 202 P--NGDHIVSASRDKTIKMWEV 221
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/156 (23%), Positives = 71/156 (45%), Gaps = 15/156 (9%)
Query: 37 VRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANV 96
+ R ++ L GH+ V + ++ S+++S S+D I VW Y + +++ GH+ +V
Sbjct: 95 IPRPPEKYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLK-GHTDSV 153
Query: 97 FCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVE 156
F + S +L+ S + D ++L++ F H V +++
Sbjct: 154 QDISF--DHSGKLLASCSADMTIKLWDFQGFEC----------IRTMHGHDHNVSSVSIM 201
Query: 157 VGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQE 192
H+V SAS D T++ + + G C + H+E
Sbjct: 202 PNGDHIV-SASRDKTIKMWEVQTG-YCVKTFTGHRE 235
Score = 36.2 bits (82), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 19/77 (24%), Positives = 40/77 (51%), Gaps = 3/77 (3%)
Query: 46 LEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPET 105
L GH V + ++S G ++S +DD + VW Y +++ + ++ ++ F T
Sbjct: 334 LVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTL---NAHEHFVTSLDFHK 390
Query: 106 SDELVVSGAGDAEVRLF 122
+ VV+G+ D V+++
Sbjct: 391 TAPYVVTGSVDQTVKVW 407
Score = 33.1 bits (74), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 41/186 (22%), Positives = 71/186 (38%), Gaps = 12/186 (6%)
Query: 44 RELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVP 103
+ GH+ V + N G+L+ S S+D + VW ++++ + H V C + P
Sbjct: 228 KTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELRE-HRHVVECISWAP 286
Query: 104 ETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAI------TPSALYQC--HTRRVKKLAV 155
E+S + G + F G D I T L H V+ +
Sbjct: 287 ESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLF 346
Query: 156 EVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQT 215
G ++ S ++D TLR D++ C ++H+ LD A + QT
Sbjct: 347 HSGGKFIL-SCADDKTLRVWDYKN-KRCMKTLNAHEHFVTS-LDFHKTAPYVVTGSVDQT 403
Query: 216 LSLKSC 221
+ + C
Sbjct: 404 VKVWEC 409
>pdb|3IZB|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae
Translating 80s Ribosome
pdb|3O2Z|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The First 80s In The Asymmetric Unit.
pdb|3O30|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The Second 80s In The Asymmetric Unit.
pdb|3U5C|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome A
pdb|3U5G|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome B
Length = 319
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 46/84 (54%), Gaps = 6/84 (7%)
Query: 48 GHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVP-ETS 106
GH+ V ++ + K S++ISGS D I VW+ + L + GH+ V + VP E +
Sbjct: 105 GHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKGQCL--ATLLGHNDWVSQVRVVPNEKA 162
Query: 107 DE---LVVSGAGDAEVRLFNLSRF 127
D+ ++S D V+ +NL++F
Sbjct: 163 DDDSVTIISAGNDKMVKAWNLNQF 186
Score = 33.1 bits (74), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 18/82 (21%), Positives = 41/82 (50%), Gaps = 5/82 (6%)
Query: 43 ERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFV 102
E + GH +N ++ + G+L+ S D I +W+ +++K ++++ VF F
Sbjct: 189 EADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSA--QDEVFSLAFS 246
Query: 103 PETSDELVVSGAGDAEVRLFNL 124
P + ++ A +++F+L
Sbjct: 247 P---NRYWLAAATATGIKVFSL 265
>pdb|3JYV|R Chain R, Structure Of The 40s Rrna And Proteins And PE TRNA FOR
EUKARYOTIC Ribosome Based On Cryo-Em Map Of Thermomyces
Lanuginosus Ribosome At 8.9a Resolution
Length = 313
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 46/84 (54%), Gaps = 6/84 (7%)
Query: 48 GHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVP-ETS 106
GH+ V ++ + K S++ISGS D I VW+ + L + GH+ V + VP E +
Sbjct: 99 GHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKGQCL--ATLLGHNDWVSQVRVVPNEKA 156
Query: 107 DE---LVVSGAGDAEVRLFNLSRF 127
D+ ++S D V+ +NL++F
Sbjct: 157 DDDSVTIISAGNDKMVKAWNLNQF 180
Score = 33.1 bits (74), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 18/82 (21%), Positives = 41/82 (50%), Gaps = 5/82 (6%)
Query: 43 ERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFV 102
E + GH +N ++ + G+L+ S D I +W+ +++K ++++ VF F
Sbjct: 183 EADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSA--QDEVFSLAFS 240
Query: 103 PETSDELVVSGAGDAEVRLFNL 124
P + ++ A +++F+L
Sbjct: 241 P---NRYWLAAATATGIKVFSL 259
>pdb|1TRJ|A Chain A, Homology Model Of Yeast Rack1 Protein Fitted Into 11.7a
Cryo-em Map Of Yeast 80s Ribosome
Length = 314
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 46/84 (54%), Gaps = 6/84 (7%)
Query: 48 GHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVP-ETS 106
GH+ V ++ + K S++ISGS D I VW+ + L + GH+ V + VP E +
Sbjct: 105 GHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKGQCLATLL--GHNDWVSQVRVVPNEKA 162
Query: 107 DE---LVVSGAGDAEVRLFNLSRF 127
D+ ++S D V+ +NL++F
Sbjct: 163 DDDSVTIISAGNDKMVKAWNLNQF 186
Score = 33.1 bits (74), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 18/82 (21%), Positives = 41/82 (50%), Gaps = 5/82 (6%)
Query: 43 ERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFV 102
E + GH +N ++ + G+L+ S D I +W+ +++K ++++ VF F
Sbjct: 189 EADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSA--QDEVFSLAFS 246
Query: 103 PETSDELVVSGAGDAEVRLFNL 124
P + ++ A +++F+L
Sbjct: 247 P---NRYWLAAATATGIKVFSL 265
>pdb|3OW8|A Chain A, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|B Chain B, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|C Chain C, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|D Chain D, Crystal Structure Of The Wd Repeat-Containing Protein 61
Length = 321
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 50/83 (60%), Gaps = 3/83 (3%)
Query: 42 QERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKF 101
+E L+ + +I+++ G L SG+ D IN++ ++ KLLH++E GH+ + F
Sbjct: 156 KEYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLE-GHAMPIRSLTF 214
Query: 102 VPETSDELVVSGAGDAEVRLFNL 124
P++ +L+V+ + D ++++++
Sbjct: 215 SPDS--QLLVTASDDGYIKIYDV 235
Score = 34.3 bits (77), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 42/87 (48%), Gaps = 3/87 (3%)
Query: 38 RRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVF 97
RL + LEGHQ V ++ + + S S D HI +W + K + SI+ G + +
Sbjct: 68 ERLDLQWSLEGHQLGVVSVDISHTLPIAASSSLDAHIRLWDLENGKQIKSIDAG-PVDAW 126
Query: 98 CTKFVPETSDELVVSGAGDAEVRLFNL 124
F P++ + + +G +V +F +
Sbjct: 127 TLAFSPDS--QYLATGTHVGKVNIFGV 151
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 16/59 (27%), Positives = 33/59 (55%), Gaps = 1/59 (1%)
Query: 46 LEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPE 104
LEGH + +++++ LL++ SDD +I ++ L ++ +GH++ V F P+
Sbjct: 202 LEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTL-SGHASWVLNVAFCPD 259
>pdb|3RFG|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
pdb|3RFG|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
Length = 319
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 46/84 (54%), Gaps = 6/84 (7%)
Query: 48 GHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVP-ETS 106
GH+ V ++ + K S++ISGS D I VW+ + L + GH+ V + VP E +
Sbjct: 105 GHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKGQCLATLL--GHNDWVSQVRVVPNEKA 162
Query: 107 DE---LVVSGAGDAEVRLFNLSRF 127
D+ ++S D V+ +NL++F
Sbjct: 163 DDDSVTIISAGNDKMVKAWNLNQF 186
Score = 33.1 bits (74), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 18/82 (21%), Positives = 41/82 (50%), Gaps = 5/82 (6%)
Query: 43 ERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFV 102
E + GH +N ++ + G+L+ S D I +W+ +++K ++++ VF F
Sbjct: 189 EADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSA--QDEVFSLAFS 246
Query: 103 PETSDELVVSGAGDAEVRLFNL 124
P + ++ A +++F+L
Sbjct: 247 P---NRYWLAAATATGIKVFSL 265
>pdb|3RFH|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|C Chain C, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|D Chain D, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
Length = 319
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 46/84 (54%), Gaps = 6/84 (7%)
Query: 48 GHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVP-ETS 106
GH+ V ++ + K S++ISGS D I VW+ + L + GH+ V + VP E +
Sbjct: 105 GHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKGQCLATLL--GHNDWVSQVRVVPNEKA 162
Query: 107 DE---LVVSGAGDAEVRLFNLSRF 127
D+ ++S D V+ +NL++F
Sbjct: 163 DDDSVTIISAGNDKMVKAWNLNQF 186
Score = 33.1 bits (74), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 18/82 (21%), Positives = 41/82 (50%), Gaps = 5/82 (6%)
Query: 43 ERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFV 102
E + GH +N ++ + G+L+ S D I +W+ +++K ++++ VF F
Sbjct: 189 EADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSA--QDEVFSLAFS 246
Query: 103 PETSDELVVSGAGDAEVRLFNL 124
P + ++ A +++F+L
Sbjct: 247 P---NRYWLAAATATGIKVFSL 265
>pdb|3CFV|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
pdb|3CFV|A Chain A, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
Length = 414
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 34/130 (26%), Positives = 59/130 (45%), Gaps = 8/130 (6%)
Query: 46 LEGHQGCVNAISWNSKGS-LLISGSDDTHINVWSYSSRKL-LHSIETGHSANVFCTKFVP 103
++ H VN +S+N +L +GS D + +W + KL LH+ E+ H +F + P
Sbjct: 271 VDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHTFES-HKDEIFQVHWSP 329
Query: 104 ETSDELVVSGAGDAEVRLFNLSRF----SGRGLDDNAITPSALYQCHTRRVKKLAVEVGN 159
L SG D + +++LS+ S +D ++ HT ++ +
Sbjct: 330 HNETILASSGT-DRRLNVWDLSKIGEEQSAEDAEDGPPELLFIHGGHTAKISDFSWNPNE 388
Query: 160 PHVVWSASED 169
P V+ S SED
Sbjct: 389 PWVICSVSED 398
Score = 31.6 bits (70), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 40/142 (28%), Positives = 63/142 (44%), Gaps = 19/142 (13%)
Query: 46 LEGHQGCVNAISWNSKGS-LLISGSDDTHINVWSYSS----RKLL--HSIETGHSANV-- 96
L GHQ +SWNS S L+S SDD + +W ++ K++ +I TGHSA V
Sbjct: 175 LRGHQKEGYGLSWNSNLSGHLLSASDDHTVCLWDINAGPKEGKIVDAKAIFTGHSAVVED 234
Query: 97 FCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVE 156
+ E+ L S A D ++ +++ + PS L HT V L+
Sbjct: 235 VAWHLLHES---LFGSVADDQKLXIWDTRS-------NTTSKPSHLVDAHTAEVNCLSFN 284
Query: 157 VGNPHVVWSASEDGTLRQHDFR 178
+ ++ + S D T+ D R
Sbjct: 285 PYSEFILATGSADKTVALWDLR 306
>pdb|3FRX|A Chain A, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|B Chain B, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|C Chain C, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|D Chain D, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1
Length = 319
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 45/84 (53%), Gaps = 6/84 (7%)
Query: 48 GHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVP-ETS 106
GH+ V ++ + K S +ISGS D I VW+ + L + GH+ V + VP E +
Sbjct: 105 GHKSDVXSVDIDKKASXIISGSRDKTIKVWTIKGQCLATLL--GHNDWVSQVRVVPNEKA 162
Query: 107 DE---LVVSGAGDAEVRLFNLSRF 127
D+ ++S D V+ +NL++F
Sbjct: 163 DDDSVTIISAGNDKXVKAWNLNQF 186
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 18/82 (21%), Positives = 40/82 (48%), Gaps = 5/82 (6%)
Query: 43 ERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFV 102
E + GH +N ++ + G+L+ S D I +W+ +++K +++ VF F
Sbjct: 189 EADFIGHNSNINTLTASPDGTLIASAGKDGEIXLWNLAAKKAXYTLSA--QDEVFSLAFS 246
Query: 103 PETSDELVVSGAGDAEVRLFNL 124
P + ++ A +++F+L
Sbjct: 247 P---NRYWLAAATATGIKVFSL 265
>pdb|2YNO|A Chain A, Yeast Betaprime Cop 1-304h6
pdb|2YNO|B Chain B, Yeast Betaprime Cop 1-304h6
Length = 310
Score = 39.7 bits (91), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 37/63 (58%), Gaps = 3/63 (4%)
Query: 65 LISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNL 124
+I+ SDD I +W Y ++ + ++E GH +NV F P +++SG+ D ++++N
Sbjct: 201 MITASDDLTIKIWDYQTKSCVATLE-GHMSNVSFAVFHPTLP--IIISGSEDGTLKIWNS 257
Query: 125 SRF 127
S +
Sbjct: 258 STY 260
Score = 39.3 bits (90), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 39/82 (47%), Gaps = 1/82 (1%)
Query: 45 ELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPE 104
+ E H + +I+ + ++SGSDD + +W++ + L GH V C F P+
Sbjct: 92 DFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPK 151
Query: 105 TSDELVVSGAGDAEVRLFNLSR 126
SG D V++++L +
Sbjct: 152 DPSTF-ASGCLDRTVKVWSLGQ 172
Score = 35.8 bits (81), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 31/132 (23%), Positives = 53/132 (40%), Gaps = 12/132 (9%)
Query: 43 ERELEGHQGCVNAISWNSKG-SLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKF 101
E+ EGH+ V +++N K S SG D + VWS ++ TG V +
Sbjct: 133 EQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDY 192
Query: 102 VPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPH 161
P +++ + D ++++ D + A + H V P
Sbjct: 193 YPLPDKPYMITASDDLTIKIW----------DYQTKSCVATLEGHMSNVSFAVFHPTLPI 242
Query: 162 VVWSASEDGTLR 173
++ S SEDGTL+
Sbjct: 243 II-SGSEDGTLK 253
Score = 30.4 bits (67), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 14/46 (30%), Positives = 27/46 (58%)
Query: 46 LEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETG 91
LEGH V+ ++ ++ISGS+D + +W+ S+ K+ ++ G
Sbjct: 224 LEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVG 269
Score = 29.6 bits (65), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 37/81 (45%), Gaps = 16/81 (19%)
Query: 641 YIASGSDDGRWFIWE-------KQTV------VNCVQCHPFDCVVATSG-IDNTIKIWTP 686
Y+ SGSDD +W +QT V CV +P D SG +D T+K+W+
Sbjct: 111 YVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSL 170
Query: 687 SASVP--SIVSGGAAGPDTAD 705
S P ++ +G G + D
Sbjct: 171 GQSTPNFTLTTGQERGVNYVD 191
>pdb|2YNN|A Chain A, Yeast Betaprime Cop 1-304 With Ktktn Motif
Length = 304
Score = 39.7 bits (91), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 37/63 (58%), Gaps = 3/63 (4%)
Query: 65 LISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNL 124
+I+ SDD I +W Y ++ + ++E GH +NV F P +++SG+ D ++++N
Sbjct: 201 MITASDDLTIKIWDYQTKSCVATLE-GHMSNVSFAVFHPTLP--IIISGSEDGTLKIWNS 257
Query: 125 SRF 127
S +
Sbjct: 258 STY 260
Score = 39.3 bits (90), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 39/82 (47%), Gaps = 1/82 (1%)
Query: 45 ELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPE 104
+ E H + +I+ + ++SGSDD + +W++ + L GH V C F P+
Sbjct: 92 DFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPK 151
Query: 105 TSDELVVSGAGDAEVRLFNLSR 126
SG D V++++L +
Sbjct: 152 DPSTF-ASGCLDRTVKVWSLGQ 172
Score = 35.8 bits (81), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 31/132 (23%), Positives = 53/132 (40%), Gaps = 12/132 (9%)
Query: 43 ERELEGHQGCVNAISWNSKG-SLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKF 101
E+ EGH+ V +++N K S SG D + VWS ++ TG V +
Sbjct: 133 EQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDY 192
Query: 102 VPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPH 161
P +++ + D ++++ D + A + H V P
Sbjct: 193 YPLPDKPYMITASDDLTIKIW----------DYQTKSCVATLEGHMSNVSFAVFHPTLPI 242
Query: 162 VVWSASEDGTLR 173
++ S SEDGTL+
Sbjct: 243 II-SGSEDGTLK 253
Score = 30.4 bits (67), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 14/46 (30%), Positives = 27/46 (58%)
Query: 46 LEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETG 91
LEGH V+ ++ ++ISGS+D + +W+ S+ K+ ++ G
Sbjct: 224 LEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVG 269
Score = 29.6 bits (65), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 37/81 (45%), Gaps = 16/81 (19%)
Query: 641 YIASGSDDGRWFIWE-------KQTV------VNCVQCHPFDCVVATSG-IDNTIKIWTP 686
Y+ SGSDD +W +QT V CV +P D SG +D T+K+W+
Sbjct: 111 YVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSL 170
Query: 687 SASVP--SIVSGGAAGPDTAD 705
S P ++ +G G + D
Sbjct: 171 GQSTPNFTLTTGQERGVNYVD 191
>pdb|3IZA|A Chain A, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|B Chain B, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|C Chain C, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|D Chain D, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|E Chain E, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|F Chain F, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|G Chain G, Structure Of An Apoptosome-Procaspase-9 Card Complex
Length = 1263
Score = 39.7 bits (91), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 27/42 (64%)
Query: 45 ELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLH 86
EL GH GCV +++ +LL +G D+ I +W+ S+ +LLH
Sbjct: 1128 ELRGHNGCVRCSAFSVDSTLLATGDDNGEIRIWNVSNGELLH 1169
Score = 38.1 bits (87), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 45/85 (52%), Gaps = 3/85 (3%)
Query: 41 SQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTK 100
++E++ HQG V + + + S S D +WS+ LH + GH+ V C+
Sbjct: 1082 NKEKDFVCHQGTVLSCDISHDATKFSSTSADKTAKIWSFDLLLPLHELR-GHNGCVRCSA 1140
Query: 101 FVPETSDELVVSGAGDAEVRLFNLS 125
F +++ L+ +G + E+R++N+S
Sbjct: 1141 FSVDST--LLATGDDNGEIRIWNVS 1163
Score = 35.8 bits (81), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 19/87 (21%), Positives = 46/87 (52%), Gaps = 1/87 (1%)
Query: 45 ELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPE 104
E++ H+ V ++++ + + S D + +W+ + +L+H+ + HS V C F
Sbjct: 658 EIKAHEDEVLCCAFSTDDRFIATCSVDKKVKIWNSMTGELVHTYDE-HSEQVNCCHFTNS 716
Query: 105 TSDELVVSGAGDAEVRLFNLSRFSGRG 131
+ L+ +G+ D ++L++L++ R
Sbjct: 717 SHHLLLATGSSDCFLKLWDLNQKECRN 743
Score = 30.8 bits (68), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 25/100 (25%), Positives = 47/100 (47%), Gaps = 7/100 (7%)
Query: 25 DVNHSLQMHSSLVRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKL 84
D N ++++ + R+ Q R H+ V I + + LIS SDD I VW++ K
Sbjct: 986 DENGAIEILELVNNRIFQSRF--QHKKTVWHIQFTADEKTLISSSDDAEIQVWNWQLDKC 1043
Query: 85 LHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNL 124
+ GH V + + + ++S + D V+++N+
Sbjct: 1044 I--FLRGHQETVKDFRLLKNSR---LLSWSFDGTVKVWNI 1078
>pdb|3MKQ|A Chain A, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|C Chain C, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|E Chain E, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
Length = 814
Score = 39.7 bits (91), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 37/63 (58%), Gaps = 3/63 (4%)
Query: 65 LISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNL 124
+I+ SDD I +W Y ++ + ++E GH +NV F P +++SG+ D ++++N
Sbjct: 201 MITASDDLTIKIWDYQTKSCVATLE-GHMSNVSFAVFHPTLP--IIISGSEDGTLKIWNS 257
Query: 125 SRF 127
S +
Sbjct: 258 STY 260
Score = 37.7 bits (86), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 39/82 (47%), Gaps = 1/82 (1%)
Query: 45 ELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPE 104
+ E H + +I+ + ++SGSDD + +W++ + L GH V C F P+
Sbjct: 92 DFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPK 151
Query: 105 TSDELVVSGAGDAEVRLFNLSR 126
SG D V++++L +
Sbjct: 152 DPSTF-ASGCLDRTVKVWSLGQ 172
Score = 34.3 bits (77), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 31/132 (23%), Positives = 53/132 (40%), Gaps = 12/132 (9%)
Query: 43 ERELEGHQGCVNAISWNSKG-SLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKF 101
E+ EGH+ V +++N K S SG D + VWS ++ TG V +
Sbjct: 133 EQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDY 192
Query: 102 VPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPH 161
P +++ + D ++++ D + A + H V P
Sbjct: 193 YPLPDKPYMITASDDLTIKIW----------DYQTKSCVATLEGHMSNVSFAVFHPTLPI 242
Query: 162 VVWSASEDGTLR 173
++ S SEDGTL+
Sbjct: 243 II-SGSEDGTLK 253
Score = 31.2 bits (69), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 37/81 (45%), Gaps = 16/81 (19%)
Query: 641 YIASGSDDGRWFIWE-------KQTV------VNCVQCHPFDCVVATSG-IDNTIKIWTP 686
Y+ SGSDD +W +QT V CV +P D SG +D T+K+W+
Sbjct: 111 YVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSL 170
Query: 687 SASVP--SIVSGGAAGPDTAD 705
S P ++ +G G + D
Sbjct: 171 GQSTPNFTLTTGQERGVNYVD 191
Score = 30.0 bits (66), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 14/46 (30%), Positives = 27/46 (58%)
Query: 46 LEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETG 91
LEGH V+ ++ ++ISGS+D + +W+ S+ K+ ++ G
Sbjct: 224 LEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVG 269
>pdb|2YNP|A Chain A, Yeast Betaprime Cop 1-604 With Ktktn Motif
Length = 604
Score = 39.3 bits (90), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 37/63 (58%), Gaps = 3/63 (4%)
Query: 65 LISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNL 124
+I+ SDD I +W Y ++ + ++E GH +NV F P +++SG+ D ++++N
Sbjct: 201 MITASDDLTIKIWDYQTKSCVATLE-GHMSNVSFAVFHPTLP--IIISGSEDGTLKIWNS 257
Query: 125 SRF 127
S +
Sbjct: 258 STY 260
Score = 38.1 bits (87), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 39/82 (47%), Gaps = 1/82 (1%)
Query: 45 ELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPE 104
+ E H + +I+ + ++SGSDD + +W++ + L GH V C F P+
Sbjct: 92 DFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPK 151
Query: 105 TSDELVVSGAGDAEVRLFNLSR 126
SG D V++++L +
Sbjct: 152 DPSTF-ASGCLDRTVKVWSLGQ 172
Score = 34.7 bits (78), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 31/132 (23%), Positives = 53/132 (40%), Gaps = 12/132 (9%)
Query: 43 ERELEGHQGCVNAISWNSKG-SLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKF 101
E+ EGH+ V +++N K S SG D + VWS ++ TG V +
Sbjct: 133 EQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDY 192
Query: 102 VPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPH 161
P +++ + D ++++ D + A + H V P
Sbjct: 193 YPLPDKPYMITASDDLTIKIW----------DYQTKSCVATLEGHMSNVSFAVFHPTLPI 242
Query: 162 VVWSASEDGTLR 173
++ S SEDGTL+
Sbjct: 243 II-SGSEDGTLK 253
Score = 30.4 bits (67), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 37/81 (45%), Gaps = 16/81 (19%)
Query: 641 YIASGSDDGRWFIWE-------KQTV------VNCVQCHPFDCVVATSG-IDNTIKIWTP 686
Y+ SGSDD +W +QT V CV +P D SG +D T+K+W+
Sbjct: 111 YVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSL 170
Query: 687 SASVP--SIVSGGAAGPDTAD 705
S P ++ +G G + D
Sbjct: 171 GQSTPNFTLTTGQERGVNYVD 191
Score = 30.0 bits (66), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 14/46 (30%), Positives = 27/46 (58%)
Query: 46 LEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETG 91
LEGH V+ ++ ++ISGS+D + +W+ S+ K+ ++ G
Sbjct: 224 LEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVG 269
>pdb|3ODT|A Chain A, Crystal Structure Of Wd40 Beta Propeller Domain Of Doa1
pdb|3ODT|B Chain B, Crystal Structure Of Wd40 Beta Propeller Domain Of Doa1
Length = 313
Score = 39.3 bits (90), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 58/221 (26%), Positives = 97/221 (43%), Gaps = 45/221 (20%)
Query: 46 LEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPET 105
L GHQG V ++S+ + ++ISGS D VW S L+++++ H+A+V+ K V +
Sbjct: 100 LIGHQGNVCSLSF--QDGVVISGSWDKTAKVWKEGS--LVYNLQA-HNASVWDAKVVSFS 154
Query: 106 SDELVVSGAGDAEVRLFN----LSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPH 161
++ + + A D ++L+ + FSG H V+ LAV V + H
Sbjct: 155 ENKFLTASA-DKTIKLWQNDKVIKTFSG---------------IHNDVVRHLAV-VDDGH 197
Query: 162 VVWSASEDGTLRQHDFRQGSSCPP--AGSSHQECRNILLD---LRCGAKRSLADPPKQTL 216
+ S S DG ++ D G S C +L + + CG R++ K+
Sbjct: 198 FI-SCSNDGLIKLVDXHTGDVLRTYEGHESFVYCIKLLPNGDIVSCGEDRTVRIWSKENG 256
Query: 217 SLK-----------SCDISSTRPHLLLVGGSDAFARLYDRR 246
SLK S D S ++VG SD R++ +
Sbjct: 257 SLKQVITLPAISIWSVDCXSNGD--IIVGSSDNLVRIFSQE 295
>pdb|3FM0|A Chain A, Crystal Structure Of Wd40 Protein Ciao1
Length = 345
Score = 39.3 bits (90), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 34/128 (26%), Positives = 56/128 (43%), Gaps = 9/128 (7%)
Query: 46 LEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPET 105
LEGH+ V +++W G+LL + S D + VW + +S V
Sbjct: 101 LEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHP 160
Query: 106 SDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWS 165
S EL+ S + D V+L+ R +D+ + + L + H V LA + + S
Sbjct: 161 SQELLASASYDDTVKLY-------REEEDDWVCCATL-EGHESTVWSLAFDPSGQRLA-S 211
Query: 166 ASEDGTLR 173
S+D T+R
Sbjct: 212 CSDDRTVR 219
Score = 36.6 bits (83), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 34/142 (23%), Positives = 63/142 (44%), Gaps = 18/142 (12%)
Query: 46 LEGHQGCVNAISWNSKGSLLISGSDDTHINVW---------------SYSSRKLLHSIET 90
LEGH+ V +++++ G L S SDD + +W S S K + ++
Sbjct: 190 LEGHESTVWSLAFDPSGQRLASCSDDRTVRIWRQYLPGNEQGVACSGSDPSWKCICTLSG 249
Query: 91 GHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRV 150
HS ++ + T + + GD +R+F S ++T + L+Q H++ V
Sbjct: 250 FHSRTIYDIAWCQLTG--ALATACGDDAIRVFQEDPNSDPQQPTFSLT-AHLHQAHSQDV 306
Query: 151 KKLAVEVGNPHVVWSASEDGTL 172
+A P ++ S S+DG +
Sbjct: 307 NCVAWNPKEPGLLASCSDDGEV 328
Score = 31.2 bits (69), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 30/125 (24%), Positives = 54/125 (43%), Gaps = 21/125 (16%)
Query: 47 EGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKL--LHSIETGHSANVFCTKFVPE 104
EGHQ V ++W+ G+ L S S D +W + + ++E GH V + P
Sbjct: 58 EGHQRTVRKVAWSPCGNYLASASFDATTCIWKKNQDDFECVTTLE-GHENEVKSVAWAP- 115
Query: 105 TSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVW 164
S L+ + + D V ++ + +++ ++ HT+ VK HVVW
Sbjct: 116 -SGNLLATCSRDKSVWVWEVD-------EEDEYECVSVLNSHTQDVK---------HVVW 158
Query: 165 SASED 169
S++
Sbjct: 159 HPSQE 163
Score = 29.3 bits (64), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 28/59 (47%), Gaps = 9/59 (15%)
Query: 639 GDYIASGSDDGRWFIWEKQTVVNCVQCHPFDCVVATSGIDNTIK--IWTPSASVPSIVS 695
G+Y+AS S D IW+K F+CV G +N +K W PS ++ + S
Sbjct: 73 GNYLASASFDATTCIWKKNQ-------DDFECVTTLEGHENEVKSVAWAPSGNLLATCS 124
>pdb|1R5M|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Sif2
Length = 425
Score = 38.1 bits (87), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 46/85 (54%), Gaps = 10/85 (11%)
Query: 45 ELEGHQGCVNAISWNSKGSLLISGSDDTHINVW---SYSSRKLLHSIETGHSANVFCTKF 101
+L GH G ++ + +N LL+S SDD + +W + +S+ + GHS ++ +
Sbjct: 242 KLIGHHGPISVLEFNDTNKLLLSASDDGTLRIWHGGNGNSQNCFY----GHSQSIVSASW 297
Query: 102 VPETSDELVVSGAGDAEVRLFNLSR 126
V D+ V+S + D VRL++L +
Sbjct: 298 V---GDDKVISCSMDGSVRLWSLKQ 319
>pdb|1GG2|B Chain B, G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Beta_1
Gamma_2 With Gdp Bound
pdb|1GP2|B Chain B, G Protein Heterotrimer Gi_alpha_1 Beta_1 Gamma_2 With Gdp
Bound
pdb|1TBG|A Chain A, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|B Chain B, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|C Chain C, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|D Chain D, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1OMW|B Chain B, Crystal Structure Of The Complex Between G Protein-Coupled
Receptor Kinase 2 And Heterotrimeric G Protein Beta 1
And Gamma 2 Subunits
pdb|1XHM|A Chain A, The Crystal Structure Of A Biologically Active Peptide
(Sigk) Bound To A G Protein Beta:gamma Heterodimer
pdb|3CIK|B Chain B, Human Grk2 In Complex With Gbetagamma Subunits
pdb|3KRW|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Soak)
pdb|3KRX|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Co-Crystal)
pdb|3AH8|B Chain B, Structure Of Heterotrimeric G Protein Galpha-Q Beta Gamma
In Complex With An Inhibitor Ym-254890
pdb|3PSC|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits
pdb|3PVU|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd101)
pdb|3PVW|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd103a)
pdb|3UZS|B Chain B, Structure Of The C13.28 Rna Aptamer Bound To The G
Protein-Coupled Receptor Kinase 2-Heterotrimeric G
Protein Beta 1 And Gamma 2 Subunit Complex
pdb|3V5W|B Chain B, Human G Protein-Coupled Receptor Kinase 2 In Complex With
Soluble Gbetagamma Subunits And Paroxetine
Length = 340
Score = 37.7 bits (86), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 34/122 (27%), Positives = 51/122 (41%), Gaps = 23/122 (18%)
Query: 39 RLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVW-SYSSRKLLHSIETGHSANVF 97
++ R L GH + A+ W + LL+S S D + +W SY++ K +H+I S+ V
Sbjct: 44 QMRTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNK-VHAIPL-RSSWVM 101
Query: 98 CTKFVPETSDELVVSGAGDAEVRLFNLSRFSG------------------RGLDDNAITP 139
+ P S V G D ++NL G R LDDN I
Sbjct: 102 TCAYAP--SGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVT 159
Query: 140 SA 141
S+
Sbjct: 160 SS 161
Score = 33.1 bits (74), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 46/100 (46%), Gaps = 10/100 (10%)
Query: 44 RELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVP 103
REL GH G ++ + ++ S S DT +W + + + H+ +V P
Sbjct: 137 RELAGHTGYLSCCRFLDDNQIVTS-SGDTTCALWDIETGQQTTTFTG-HTGDVMSLSLAP 194
Query: 104 ETSDELVVSGAGDAEVRLFNL------SRFSGRGLDDNAI 137
+T L VSGA DA +L+++ F+G D NAI
Sbjct: 195 DT--RLFVSGACDASAKLWDVREGMCRQTFTGHESDINAI 232
Score = 30.8 bits (68), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 34/76 (44%), Gaps = 3/76 (3%)
Query: 49 HQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDE 108
H G V ++S L +SG+ D +W + TGH +++ F P +
Sbjct: 183 HTGDVMSLSLAPDTRLFVSGACDASAKLWDV-REGMCRQTFTGHESDINAICFFP--NGN 239
Query: 109 LVVSGAGDAEVRLFNL 124
+G+ DA RLF+L
Sbjct: 240 AFATGSDDATCRLFDL 255
>pdb|3SN6|B Chain B, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs
Protein Complex
Length = 351
Score = 37.7 bits (86), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 34/122 (27%), Positives = 51/122 (41%), Gaps = 23/122 (18%)
Query: 39 RLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVW-SYSSRKLLHSIETGHSANVF 97
++ R L GH + A+ W + LL+S S D + +W SY++ K +H+I S+ V
Sbjct: 55 QMRTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNK-VHAIPL-RSSWVM 112
Query: 98 CTKFVPETSDELVVSGAGDAEVRLFNLSRFSG------------------RGLDDNAITP 139
+ P S V G D ++NL G R LDDN I
Sbjct: 113 TCAYAP--SGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVT 170
Query: 140 SA 141
S+
Sbjct: 171 SS 172
Score = 33.1 bits (74), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 46/100 (46%), Gaps = 10/100 (10%)
Query: 44 RELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVP 103
REL GH G ++ + ++ S S DT +W + + + H+ +V P
Sbjct: 148 RELAGHTGYLSCCRFLDDNQIVTS-SGDTTCALWDIETGQQTTTFTG-HTGDVMSLSLAP 205
Query: 104 ETSDELVVSGAGDAEVRLFNL------SRFSGRGLDDNAI 137
+T L VSGA DA +L+++ F+G D NAI
Sbjct: 206 DT--RLFVSGACDASAKLWDVREGMCRQTFTGHESDINAI 243
Score = 30.8 bits (68), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 34/76 (44%), Gaps = 3/76 (3%)
Query: 49 HQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDE 108
H G V ++S L +SG+ D +W + TGH +++ F P +
Sbjct: 194 HTGDVMSLSLAPDTRLFVSGACDASAKLWDV-REGMCRQTFTGHESDINAICFFP--NGN 250
Query: 109 LVVSGAGDAEVRLFNL 124
+G+ DA RLF+L
Sbjct: 251 AFATGSDDATCRLFDL 266
>pdb|2BCJ|B Chain B, Crystal Structure Of G Protein-coupled Receptor Kinase 2
In Complex With Galpha-q And Gbetagamma Subunits
Length = 340
Score = 37.7 bits (86), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 34/122 (27%), Positives = 51/122 (41%), Gaps = 23/122 (18%)
Query: 39 RLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVW-SYSSRKLLHSIETGHSANVF 97
++ R L GH + A+ W + LL+S S D + +W SY++ K +H+I S+ V
Sbjct: 44 QMRTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNK-VHAIPL-RSSWVM 101
Query: 98 CTKFVPETSDELVVSGAGDAEVRLFNLSRFSG------------------RGLDDNAITP 139
+ P S V G D ++NL G R LDDN I
Sbjct: 102 TCAYAP--SGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVT 159
Query: 140 SA 141
S+
Sbjct: 160 SS 161
Score = 33.1 bits (74), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 46/100 (46%), Gaps = 10/100 (10%)
Query: 44 RELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVP 103
REL GH G ++ + ++ S S DT +W + + + H+ +V P
Sbjct: 137 RELAGHTGYLSCCRFLDDNQIVTS-SGDTTCALWDIETGQQTTTFTG-HTGDVMSLSLAP 194
Query: 104 ETSDELVVSGAGDAEVRLFNL------SRFSGRGLDDNAI 137
+T L VSGA DA +L+++ F+G D NAI
Sbjct: 195 DT--RLFVSGACDASAKLWDVREGMCRQTFTGHESDINAI 232
Score = 30.8 bits (68), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 34/76 (44%), Gaps = 3/76 (3%)
Query: 49 HQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDE 108
H G V ++S L +SG+ D +W + TGH +++ F P +
Sbjct: 183 HTGDVMSLSLAPDTRLFVSGACDASAKLWDV-REGMCRQTFTGHESDINAICFFP--NGN 239
Query: 109 LVVSGAGDAEVRLFNL 124
+G+ DA RLF+L
Sbjct: 240 AFATGSDDATCRLFDL 255
>pdb|1GOT|B Chain B, Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimera And
The Gt-Beta-Gamma Subunits
pdb|2TRC|B Chain B, PhosducinTRANSDUCIN BETA-Gamma Complex
pdb|1B9X|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin
pdb|1B9Y|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin Beta-Gamma
Length = 340
Score = 37.4 bits (85), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 34/122 (27%), Positives = 51/122 (41%), Gaps = 23/122 (18%)
Query: 39 RLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVW-SYSSRKLLHSIETGHSANVF 97
++ R L GH + A+ W + LL+S S D + +W SY++ K +H+I S+ V
Sbjct: 44 QMRTRRTLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNK-VHAIPL-RSSWVM 101
Query: 98 CTKFVPETSDELVVSGAGDAEVRLFNLSRFSG------------------RGLDDNAITP 139
+ P S V G D ++NL G R LDDN I
Sbjct: 102 TCAYAP--SGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVT 159
Query: 140 SA 141
S+
Sbjct: 160 SS 161
Score = 33.5 bits (75), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 46/100 (46%), Gaps = 10/100 (10%)
Query: 44 RELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVP 103
REL GH G ++ + ++ S S DT +W + + + H+ +V P
Sbjct: 137 RELAGHTGYLSCCRFLDDNQIVTS-SGDTTCALWDIETGQQTTTFTG-HTGDVMSLSLAP 194
Query: 104 ETSDELVVSGAGDAEVRLFNL------SRFSGRGLDDNAI 137
+T L VSGA DA +L+++ F+G D NAI
Sbjct: 195 DT--RLFVSGACDASAKLWDVREGMCRQTFTGHESDINAI 232
Score = 30.8 bits (68), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 34/76 (44%), Gaps = 3/76 (3%)
Query: 49 HQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDE 108
H G V ++S L +SG+ D +W + TGH +++ F P +
Sbjct: 183 HTGDVMSLSLAPDTRLFVSGACDASAKLWDV-REGMCRQTFTGHESDINAICFFP--NGN 239
Query: 109 LVVSGAGDAEVRLFNL 124
+G+ DA RLF+L
Sbjct: 240 AFATGSDDATCRLFDL 255
>pdb|1A0R|B Chain B, Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-Gamma
Length = 340
Score = 37.4 bits (85), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 34/122 (27%), Positives = 51/122 (41%), Gaps = 23/122 (18%)
Query: 39 RLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVW-SYSSRKLLHSIETGHSANVF 97
++ R L GH + A+ W + LL+S S D + +W SY++ K +H+I S+ V
Sbjct: 44 QMRTRRTLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNK-VHAIPL-RSSWVM 101
Query: 98 CTKFVPETSDELVVSGAGDAEVRLFNLSRFSG------------------RGLDDNAITP 139
+ P S V G D ++NL G R LDDN I
Sbjct: 102 TCAYAP--SGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVT 159
Query: 140 SA 141
S+
Sbjct: 160 SS 161
Score = 33.1 bits (74), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 46/100 (46%), Gaps = 10/100 (10%)
Query: 44 RELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVP 103
REL GH G ++ + ++ S S DT +W + + + H+ +V P
Sbjct: 137 RELAGHTGYLSCCRFLDDNQIVTS-SGDTTCALWDIETGQQTTTFTG-HTGDVMSLSLAP 194
Query: 104 ETSDELVVSGAGDAEVRLFNL------SRFSGRGLDDNAI 137
+T L VSGA DA +L+++ F+G D NAI
Sbjct: 195 DT--RLFVSGACDASAKLWDVREGMCRQTFTGHESDINAI 232
Score = 30.8 bits (68), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 34/76 (44%), Gaps = 3/76 (3%)
Query: 49 HQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDE 108
H G V ++S L +SG+ D +W + TGH +++ F P +
Sbjct: 183 HTGDVMSLSLAPDTRLFVSGACDASAKLWDV-REGMCRQTFTGHESDINAICFFP--NGN 239
Query: 109 LVVSGAGDAEVRLFNL 124
+G+ DA RLF+L
Sbjct: 240 AFATGSDDATCRLFDL 255
>pdb|3DM0|A Chain A, Maltose Binding Protein Fusion With Rack1 From A. Thaliana
Length = 694
Score = 37.0 bits (84), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 40/84 (47%), Gaps = 2/84 (2%)
Query: 44 RELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSY--SSRKLLHSIETGHSANVFCTKF 101
R GH V +++++ ++S S D I +W+ + + GH V C +F
Sbjct: 466 RRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRF 525
Query: 102 VPETSDELVVSGAGDAEVRLFNLS 125
P T +VS + D V+++NLS
Sbjct: 526 SPNTLQPTIVSASWDKTVKVWNLS 549
Score = 36.2 bits (82), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 30/114 (26%), Positives = 53/114 (46%), Gaps = 17/114 (14%)
Query: 64 LLISGSDDTHINVWSYSSRKLLHSIE----TGHSANVFCTKFVPETSDELVVSGAGDAEV 119
+++S S D I +W + + + TGHS F V + + +SG+ D E+
Sbjct: 397 IIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSH--FVEDVVLSSDGQFALSGSWDGEL 454
Query: 120 RLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLR 173
RL++L+ A + + HT+ V +A + N +V SAS D T++
Sbjct: 455 RLWDLA----------AGVSTRRFVGHTKDVLSVAFSLDNRQIV-SASRDRTIK 497
Score = 34.3 bits (77), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 27/53 (50%)
Query: 46 LEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFC 98
L GH G V+ ++ + GSL SG D + +W + K L+S+E + C
Sbjct: 557 LAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKLYSLEANSVIHALC 609
Score = 33.9 bits (76), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 40/85 (47%), Gaps = 11/85 (12%)
Query: 43 ERELEGHQGCVNAISWNSKGSLLISGSDDTHINVW----SYSSRKLLHSIETGHSANVFC 98
+R L GH V + +S G +SGS D + +W S+R+ + GH+ +V
Sbjct: 423 QRRLTGHSHFVEDVVLSSDGQFALSGSWDGELRLWDLAAGVSTRRFV-----GHTKDVLS 477
Query: 99 TKFVPETSDELVVSGAGDAEVRLFN 123
F + +VS + D ++L+N
Sbjct: 478 VAF--SLDNRQIVSASRDRTIKLWN 500
>pdb|4G56|B Chain B, Crystal Structure Of Full Length Prmt5/mep50 Complexes
From Xenopus Laevis
pdb|4G56|D Chain D, Crystal Structure Of Full Length Prmt5/mep50 Complexes
From Xenopus Laevis
Length = 357
Score = 35.4 bits (80), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 26/97 (26%), Positives = 43/97 (44%), Gaps = 6/97 (6%)
Query: 30 LQMHSSLVRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIE 89
L+ S LV + ++ H V +S S G+ +SG D + VW S + +L S
Sbjct: 123 LEKESLLVNKFAKYE----HDDIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQKAVLKSYN 178
Query: 90 TGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSR 126
HS+ V C P D + +S D + L++ +
Sbjct: 179 -AHSSEVNCVAACP-GKDTIFLSCGEDGRILLWDTRK 213
>pdb|3ZWL|B Chain B, Structure Of Eukaryotic Translation Initiation Factor
Eif3i Complex With Eif3b C-Terminus (655-700)
pdb|3ZWL|D Chain D, Structure Of Eukaryotic Translation Initiation Factor
Eif3i Complex With Eif3b C-Terminus (655-700)
Length = 369
Score = 35.4 bits (80), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 20/81 (24%), Positives = 45/81 (55%), Gaps = 3/81 (3%)
Query: 45 ELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPE 104
+L GH+ + + +N +G LL S S D+ +VW + + L +++ GH+ ++ +
Sbjct: 27 KLTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGTLD-GHTGTIWSIDV--D 83
Query: 105 TSDELVVSGAGDAEVRLFNLS 125
+ V+G+ D ++L+++S
Sbjct: 84 CFTKYCVTGSADYSIKLWDVS 104
>pdb|4GQB|B Chain B, Crystal Structure Of The Human Prmt5:mep50 Complex
Length = 344
Score = 34.7 bits (78), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 37/75 (49%), Gaps = 2/75 (2%)
Query: 49 HQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDE 108
H V+ +S S G+ +SGS D I VW + + +L S H+A V C P D
Sbjct: 126 HDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQQVVLSSYR-AHAAQVTCVAASPH-KDS 183
Query: 109 LVVSGAGDAEVRLFN 123
+ +S + D + L++
Sbjct: 184 VFLSCSEDNRILLWD 198
>pdb|2GU1|A Chain A, Crystal Structure Of A Zinc Containing Peptidase From
Vibrio Cholerae
Length = 361
Score = 33.9 bits (76), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 32/58 (55%), Gaps = 1/58 (1%)
Query: 613 IDMKQRYVGHCNVG-TDIKQASFLGQRGDYIASGSDDGRWFIWEKQTVVNCVQCHPFD 669
I +KQ+Y+G N G ++IK SF +GD A ++DGR++ ++ +P D
Sbjct: 150 ILVKQQYLGEHNTGNSEIKAISFKLAKGDVSAFLAEDGRFYDRAGNSLERAFNRYPVD 207
>pdb|4GGD|A Chain A, Structural Analysis Of Human Cdc20 Supports Multisite
Degron Recognition By ApcC.
pdb|4GGD|B Chain B, Structural Analysis Of Human Cdc20 Supports Multisite
Degron Recognition By ApcC
Length = 431
Score = 33.1 bits (74), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 35/83 (42%), Gaps = 4/83 (4%)
Query: 46 LEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRK---LLHSIETGHSANVFCTKFV 102
L GH V + W G L SG +D +NVW + + + T H V +
Sbjct: 237 LSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWC 296
Query: 103 PETSDELVVSGA-GDAEVRLFNL 124
P S+ L G D +R++N+
Sbjct: 297 PWQSNVLATGGGTSDRHIRIWNV 319
>pdb|4GGA|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
Degron Recognition By ApcC
Length = 420
Score = 32.7 bits (73), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 35/83 (42%), Gaps = 4/83 (4%)
Query: 46 LEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRK---LLHSIETGHSANVFCTKFV 102
L GH V + W G L SG +D +NVW + + + T H V +
Sbjct: 226 LSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWC 285
Query: 103 PETSDELVVSGA-GDAEVRLFNL 124
P S+ L G D +R++N+
Sbjct: 286 PWQSNVLATGGGTSDRHIRIWNV 308
>pdb|4GGC|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
Degron Recognition By ApcC
Length = 318
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 31/124 (25%), Positives = 50/124 (40%), Gaps = 5/124 (4%)
Query: 46 LEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRK---LLHSIETGHSANVFCTKFV 102
L GH V + W G L SG +D +NVW + + + T H V +
Sbjct: 146 LSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWC 205
Query: 103 PETSDELVVSGA-GDAEVRLFNL-SRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNP 160
P S+ L G D +R++N+ S +D ++ S L+ H + + N
Sbjct: 206 PWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCSILWSPHYKELISGHGFAQNQ 265
Query: 161 HVVW 164
V+W
Sbjct: 266 LVIW 269
>pdb|1NR0|A Chain A, Two Seven-Bladed Beta-Propeller Domains Revealed By The
Structure Of A C. Elegans Homologue Of Yeast Actin
Interacting Protein 1 (Aip1).
pdb|1PEV|A Chain A, Crystal Structure Of The Actin Interacting Protein From
Caenorhabditis Elegans
Length = 611
Score = 31.6 bits (70), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 13/43 (30%), Positives = 24/43 (55%)
Query: 49 HQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETG 91
H G V ++W+ G+ + S S D I +W+ ++ K+ +I G
Sbjct: 238 HSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVG 280
>pdb|3F3P|A Chain A, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|B Chain B, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|E Chain E, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|F Chain F, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|I Chain I, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|J Chain J, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
Length = 351
Score = 31.6 bits (70), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 27/50 (54%), Gaps = 2/50 (4%)
Query: 45 ELEGHQGCVNAISWNSKGSLLISGSDDTHINVW--SYSSRKLLHSIETGH 92
E + H G V ++SWN G++L S DD + +W +YS+ S+ T
Sbjct: 301 EHDDHNGEVWSVSWNLTGTILSSAGDDGKVRLWKATYSNEFKCXSVITAQ 350
>pdb|3F3F|A Chain A, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21
pdb|3F3F|B Chain B, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21
pdb|3F3F|E Chain E, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21
pdb|3F3F|F Chain F, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21
pdb|3F3G|A Chain A, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P212121
pdb|3F3G|B Chain B, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P212121
pdb|3F3G|E Chain E, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P212121
pdb|3F3G|F Chain F, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P212121
Length = 351
Score = 31.6 bits (70), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 20/33 (60%)
Query: 45 ELEGHQGCVNAISWNSKGSLLISGSDDTHINVW 77
E + H G V ++SWN G++L S DD + +W
Sbjct: 301 EHDDHNGEVWSVSWNLTGTILSSAGDDGKVRLW 333
>pdb|3EWE|A Chain A, Crystal Structure Of The Nup85SEH1 COMPLEX
pdb|3EWE|C Chain C, Crystal Structure Of The Nup85SEH1 COMPLEX
Length = 349
Score = 31.6 bits (70), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 20/33 (60%)
Query: 45 ELEGHQGCVNAISWNSKGSLLISGSDDTHINVW 77
E + H G V ++SWN G++L S DD + +W
Sbjct: 299 EHDDHNGEVWSVSWNLTGTILSSAGDDGKVRLW 331
>pdb|2XZM|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 1
pdb|2XZN|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 2
Length = 343
Score = 31.2 bits (69), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 28/104 (26%), Positives = 45/104 (43%), Gaps = 14/104 (13%)
Query: 33 HSSLVRRLSQERELEGHQGCVNAI------SWNSKGSLLISGSDDTHINVWSYSSRK--- 83
+SSL ++ + LEGH V +I N +LISGS D + +W +
Sbjct: 4 NSSLDIQVVKRGILEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNG 63
Query: 84 ---LLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNL 124
+ H TGH N F + + +S + D +RL++L
Sbjct: 64 YFGIPHKALTGH--NHFVSDLALSQENCFAISSSWDKTLRLWDL 105
>pdb|3DXK|C Chain C, Structure Of Bos Taurus Arp23 COMPLEX WITH BOUND INHIBITOR
Ck0944636
pdb|3DXM|C Chain C, Structure Of Bos Taurus Arp23 COMPLEX WITH BOUND INHIBITOR
Ck0993548
pdb|3RSE|C Chain C, Structural And Biochemical Characterization Of Two Binding
Sites For Nucleation Promoting Factor Wasp-Vca On Arp23
COMPLEX
pdb|3UKR|C Chain C, Crystal Structure Of Bos Taurus Arp2/3 Complex With Bound
Inhibitor Ck-666
pdb|3UKU|C Chain C, Structure Of Arp2/3 Complex With Bound Inhibitor Ck-869
pdb|3ULE|C Chain C, Structure Of Bos Taurus Arp2/3 Complex With Bound
Inhibitor Ck-869 And Atp
Length = 372
Score = 30.4 bits (67), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 21/91 (23%), Positives = 37/91 (40%), Gaps = 5/91 (5%)
Query: 27 NHSLQMHSSLVRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKL-- 84
NH + ++ + Q EL+ H G V I W + +++ D + VW+ R
Sbjct: 29 NHEVHIYEKSGNKWVQVHELKEHNGQVTGIDWAPDSNRIVTCGTDRNAYVWTLKGRTWKP 88
Query: 85 -LHSIETGHSANVFCTKFVPETSDELVVSGA 114
L + +A C ++ P V SG+
Sbjct: 89 TLVILRINRAAR--CVRWAPNEKKFAVGSGS 117
>pdb|3VL1|A Chain A, Crystal Structure Of Yeast Rpn14
pdb|3VL1|B Chain B, Crystal Structure Of Yeast Rpn14
Length = 420
Score = 30.4 bits (67), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 36/167 (21%), Positives = 61/167 (36%), Gaps = 13/167 (7%)
Query: 30 LQMHSSLVRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSI- 88
+Q+ V+ S R L GH+ V I+ +G ++S S D I +W + +H+
Sbjct: 161 MQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRNVLSASLDGTIRLWECGTGTTIHTFN 220
Query: 89 --ETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCH 146
E H FV +S + + ++ G IT ++
Sbjct: 221 RKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSGVITVHNVFSKE 280
Query: 147 ---------TRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCP 184
T L V+ N + +++ E+G L Q D R CP
Sbjct: 281 QTIQLPSKFTCSCNSLTVDGNNANYIYAGYENGMLAQWDLRS-PECP 326
>pdb|3ACP|A Chain A, Crystal Structure Of Yeast Rpn14, A Chaperone Of The 19s
Reg Particle Of The Proteasome
Length = 417
Score = 30.4 bits (67), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 36/169 (21%), Positives = 61/169 (36%), Gaps = 13/169 (7%)
Query: 28 HSLQMHSSLVRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHS 87
+Q+ V+ S R L GH+ V I+ +G ++S S D I +W + +H+
Sbjct: 156 QDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRNVLSASLDGTIRLWECGTGTTIHT 215
Query: 88 I---ETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQ 144
E H FV +S + + ++ G IT ++
Sbjct: 216 FNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSGVITVHNVFS 275
Query: 145 CH---------TRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCP 184
T L V+ N + +++ E+G L Q D R CP
Sbjct: 276 KEQTIQLPSKFTCSCNSLTVDGNNANYIYAGYENGMLAQWDLRS-PECP 323
>pdb|3MMY|A Chain A, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|C Chain C, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|E Chain E, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|G Chain G, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
Length = 368
Score = 30.4 bits (67), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 17/75 (22%), Positives = 35/75 (46%), Gaps = 2/75 (2%)
Query: 49 HQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDE 108
H G V + W+ GS + + S D +W SS + + + H A V ++ +
Sbjct: 85 HTGPVLDVCWSDDGSKVFTASCDKTAKMWDLSSNQAIQIAQ--HDAPVKTIHWIKAPNYS 142
Query: 109 LVVSGAGDAEVRLFN 123
V++G+ D ++ ++
Sbjct: 143 CVMTGSWDKTLKFWD 157
>pdb|1K8K|C Chain C, Crystal Structure Of Arp23 COMPLEX
pdb|1TYQ|C Chain C, Crystal Structure Of Arp23 COMPLEX WITH BOUND ATP AND
Calcium
pdb|1U2V|C Chain C, Crystal Structure Of Arp23 COMPLEX WITH BOUND ADP AND
Calcium
pdb|2P9I|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Adp And Crosslinked With Gluteraldehyde
pdb|2P9K|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Atp And Crosslinked With Glutaraldehyde
pdb|2P9L|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX
pdb|2P9N|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Adp
pdb|2P9P|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Adp
pdb|2P9S|C Chain C, Structure Of Bovine Arp23 COMPLEX CO-Crystallized With
AtpMG2+
pdb|2P9U|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Amp-Pnp And Calcium
Length = 372
Score = 30.0 bits (66), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 20/91 (21%), Positives = 37/91 (40%), Gaps = 5/91 (5%)
Query: 27 NHSLQMHSSLVRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKL-- 84
NH + ++ + Q EL+ H G V + W + +++ D + VW+ R
Sbjct: 29 NHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKP 88
Query: 85 -LHSIETGHSANVFCTKFVPETSDELVVSGA 114
L + +A C ++ P V SG+
Sbjct: 89 TLVILRINRAAR--CVRWAPNEKKFAVGSGS 117
>pdb|2HES|X Chain X, Cytosolic Iron-sulphur Assembly Protein- 1
Length = 330
Score = 29.6 bits (65), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 32/129 (24%), Positives = 57/129 (44%), Gaps = 26/129 (20%)
Query: 46 LEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLH---SIETGHSANVFCTKFV 102
+EGH+ V ++W++ G L + S D + +W + S+ HS +V +
Sbjct: 103 IEGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVIWH 162
Query: 103 PETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHV 162
P S+ L+ S + D VR++ + DD+ ++C +AV G+
Sbjct: 163 P--SEALLASSSYDDTVRIW-------KDYDDD-------WEC-------VAVLNGHEGT 199
Query: 163 VWSASEDGT 171
VWS+ D T
Sbjct: 200 VWSSDFDKT 208
>pdb|3K1Q|A Chain A, Backbone Model Of An Aquareovirus Virion By Cryo-Electron
Microscopy And Bioinformatics
pdb|3IYL|W Chain W, Atomic Cryoem Structure Of A Nonenveloped Virus Suggests How
Penetration Protein Is Primed For Cell Entry
Length = 1299
Score = 29.6 bits (65), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 31/119 (26%), Positives = 56/119 (47%), Gaps = 20/119 (16%)
Query: 228 PHLLLVGG----SDAFARLYDRRMLPPL----TSCQKRMSPPPC-VNYFCPMHLSEHGRS 278
P+++ VG SD + R+ P L T+ R++P P +N C + ++ +
Sbjct: 999 PYIIGVGSPLNLSDINTAISYSRLTPILHIDTTTPPLRVNPVPTPLNQQCAIRITSLDPA 1058
Query: 279 S-LHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVGDASKIMSFTPTLNGL 336
+ L + H NG EV+ G + + AG A++Y + + ++ FTPTL G+
Sbjct: 1059 AVLSVQH-----NGVEVIGGTPGNVISV-----AGAAALQYILANQEFLLQFTPTLPGI 1107
>pdb|3Q47|B Chain B, Crystal Structure Of Tpr Domain Of Chip Complexed With
Pseudophosphorylated Smad1 Peptide
pdb|3Q49|B Chain B, Crystal Structure Of The Tpr Domain Of Chip Complexed With
Hsp70-C Peptide
pdb|3Q4A|B Chain B, Crystal Structure Of The Tpr Domain Of Chip Complexed With
Phosphorylated Smad1 Peptide
Length = 137
Score = 29.3 bits (64), Expect = 8.4, Method: Composition-based stats.
Identities = 11/38 (28%), Positives = 21/38 (55%)
Query: 424 QMAIRDCYNARRIDSSSFRAHLYMSEALEQLCKYKEAL 461
+ A+ DC A +D S +AH ++ + ++ Y EA+
Sbjct: 60 EQALADCRRALELDGQSVKAHFFLGQCQLEMESYDEAI 97
>pdb|2QSX|A Chain A, Crystal Structure Of Putative Transcriptional Regulator
Lysr From Vibrio Parahaemolyticus
pdb|2QSX|B Chain B, Crystal Structure Of Putative Transcriptional Regulator
Lysr From Vibrio Parahaemolyticus
Length = 218
Score = 29.3 bits (64), Expect = 8.4, Method: Composition-based stats.
Identities = 15/57 (26%), Positives = 27/57 (47%)
Query: 308 VNHAGGRAMRYTVGDASKIMSFTPTLNGLELQPPIHDFLQTNIRVRGEVATGLGKCR 364
+ HA ++ ++ TP+ L L P I+DF Q + +R ++ TG G +
Sbjct: 4 IQHATASLIQTNTDQELLVVDVTPSFASLWLVPNINDFHQRHPNIRVKILTGDGAVK 60
>pdb|3GZX|A Chain A, Crystal Structure Of The Biphenyl Dioxygenase In Complex
With Biphenyl From Comamonas Testosteroni Sp. Strain
B-356
pdb|3GZY|A Chain A, Crystal Structure Of The Biphenyl Dioxygenase From
Comamonas Testosteroni Sp. Strain B-356
Length = 457
Score = 28.9 bits (63), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 28/70 (40%), Gaps = 10/70 (14%)
Query: 276 GRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMD----------VNHAGGRAMRYTVGDASK 325
GRS L L H T P + L +Y GE +M +N R MR D
Sbjct: 55 GRSWLMLGHETHIPKIGDYLTTYMGEDPVIMVRQKDQSIKVFLNQCRHRGMRIVRSDGGN 114
Query: 326 IMSFTPTLNG 335
+FT T +G
Sbjct: 115 AKAFTCTYHG 124
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.133 0.406
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 21,829,059
Number of Sequences: 62578
Number of extensions: 861504
Number of successful extensions: 2313
Number of sequences better than 100.0: 90
Number of HSP's better than 100.0 without gapping: 62
Number of HSP's successfully gapped in prelim test: 28
Number of HSP's that attempted gapping in prelim test: 1818
Number of HSP's gapped (non-prelim): 446
length of query: 751
length of database: 14,973,337
effective HSP length: 106
effective length of query: 645
effective length of database: 8,340,069
effective search space: 5379344505
effective search space used: 5379344505
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)