Query 004477
Match_columns 751
No_of_seqs 564 out of 3152
Neff 9.0
Searched_HMMs 46136
Date Fri Mar 29 00:03:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004477.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/004477hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1310 WD40 repeat protein [G 100.0 1E-100 2E-105 786.0 41.5 719 1-751 1-758 (758)
2 KOG1334 WD40 repeat protein [G 100.0 2E-47 4.3E-52 389.8 22.0 264 9-307 101-364 (559)
3 KOG0271 Notchless-like WD40 re 100.0 3.7E-44 8E-49 355.4 25.8 234 41-334 106-380 (480)
4 KOG0293 WD40 repeat-containing 100.0 5.7E-42 1.2E-46 342.7 25.0 208 41-310 215-426 (519)
5 KOG0272 U4/U6 small nuclear ri 100.0 1.5E-40 3.3E-45 334.3 23.3 215 37-310 162-376 (459)
6 KOG0271 Notchless-like WD40 re 100.0 1.8E-37 3.9E-42 307.9 24.3 189 84-332 107-299 (480)
7 KOG0282 mRNA splicing factor [ 100.0 8.2E-38 1.8E-42 319.8 20.2 244 6-310 171-416 (503)
8 KOG0265 U5 snRNP-specific prot 100.0 1.1E-36 2.3E-41 294.6 25.5 209 41-310 38-247 (338)
9 KOG0286 G-protein beta subunit 100.0 4.2E-36 9.2E-41 289.3 29.0 217 40-311 45-261 (343)
10 KOG1063 RNA polymerase II elon 100.0 1E-36 2.2E-41 323.1 25.1 536 27-689 33-650 (764)
11 KOG0316 Conserved WD40 repeat- 100.0 1.3E-34 2.9E-39 270.7 25.7 206 42-310 9-214 (307)
12 KOG0272 U4/U6 small nuclear ri 100.0 1.8E-35 4E-40 297.8 18.1 223 25-310 194-419 (459)
13 KOG0279 G protein beta subunit 100.0 1.4E-32 2.9E-37 263.8 29.4 214 39-311 4-224 (315)
14 KOG0645 WD40 repeat protein [G 100.0 2.1E-32 4.6E-37 261.3 30.6 219 39-309 3-225 (312)
15 KOG0284 Polyadenylation factor 100.0 8E-34 1.7E-38 284.6 19.9 199 50-310 96-295 (464)
16 KOG0266 WD40 repeat-containing 100.0 3.4E-32 7.4E-37 302.6 31.6 214 41-311 149-366 (456)
17 KOG0295 WD40 repeat-containing 100.0 8.1E-33 1.8E-37 273.9 23.1 180 31-249 89-268 (406)
18 KOG0315 G-protein beta subunit 100.0 6.5E-32 1.4E-36 254.8 27.9 188 63-310 11-198 (311)
19 KOG0319 WD40-repeat-containing 100.0 3.2E-32 6.9E-37 291.3 28.0 272 37-331 91-515 (775)
20 KOG0318 WD40 repeat stress pro 100.0 8.2E-31 1.8E-35 270.5 34.4 179 38-245 178-391 (603)
21 KOG0285 Pleiotropic regulator 100.0 4.8E-31 1E-35 260.3 24.3 214 35-310 136-349 (460)
22 PLN00181 protein SPA1-RELATED; 100.0 2.2E-30 4.7E-35 309.1 35.2 205 46-310 479-691 (793)
23 KOG1446 Histone H3 (Lys4) meth 100.0 7.4E-30 1.6E-34 250.0 30.6 216 38-311 2-219 (311)
24 KOG0283 WD40 repeat-containing 100.0 2.4E-31 5.1E-36 290.4 22.4 219 37-310 253-533 (712)
25 KOG0263 Transcription initiati 100.0 1.9E-31 4.2E-36 288.6 20.8 210 41-311 442-651 (707)
26 cd00200 WD40 WD40 domain, foun 100.0 2.3E-29 5E-34 261.1 32.7 207 43-310 2-208 (289)
27 KOG0263 Transcription initiati 100.0 1.7E-30 3.7E-35 281.2 24.7 208 43-311 371-609 (707)
28 KOG0281 Beta-TrCP (transducin 100.0 1.1E-30 2.5E-35 256.4 19.0 195 49-311 196-390 (499)
29 KOG0276 Vesicle coat complex C 100.0 5.8E-30 1.3E-34 268.5 25.3 213 39-310 2-216 (794)
30 KOG0315 G-protein beta subunit 100.0 7.5E-29 1.6E-33 234.1 28.3 230 23-310 15-246 (311)
31 KOG0279 G protein beta subunit 100.0 7.9E-29 1.7E-33 238.0 23.8 225 25-312 35-265 (315)
32 KOG0291 WD40-repeat-containing 100.0 6.3E-28 1.4E-32 258.4 33.3 248 37-344 294-543 (893)
33 KOG0306 WD40-repeat-containing 100.0 7.9E-29 1.7E-33 265.1 26.1 447 27-689 86-666 (888)
34 KOG0286 G-protein beta subunit 100.0 1.8E-28 3.9E-33 236.7 24.3 250 26-336 75-330 (343)
35 KOG0273 Beta-transducin family 100.0 2E-28 4.3E-33 250.0 26.0 226 44-332 173-412 (524)
36 KOG0288 WD40 repeat protein Ti 100.0 1.8E-29 4E-34 253.8 15.1 204 42-310 167-372 (459)
37 KOG0318 WD40 repeat stress pro 100.0 9.8E-27 2.1E-31 240.5 35.3 249 37-312 46-353 (603)
38 KOG0640 mRNA cleavage stimulat 100.0 3.1E-28 6.8E-33 236.2 22.0 216 43-312 105-338 (430)
39 KOG0319 WD40-repeat-containing 100.0 4.3E-29 9.4E-34 267.3 15.9 207 48-313 60-272 (775)
40 KOG0275 Conserved WD40 repeat- 100.0 2.1E-28 4.6E-33 238.3 17.4 205 48-310 211-424 (508)
41 KOG0296 Angio-associated migra 100.0 5.9E-27 1.3E-31 232.6 27.4 212 41-312 55-266 (399)
42 KOG0291 WD40-repeat-containing 100.0 1.1E-26 2.4E-31 248.9 31.2 248 37-312 132-425 (893)
43 KOG0321 WD40 repeat-containing 100.0 2E-27 4.3E-32 250.6 24.7 227 56-310 55-302 (720)
44 KOG0295 WD40 repeat-containing 100.0 2.7E-28 5.8E-33 241.9 17.0 246 27-334 129-389 (406)
45 KOG0292 Vesicle coat complex C 100.0 1.5E-27 3.2E-32 258.9 24.0 220 45-310 4-237 (1202)
46 KOG0313 Microtubule binding pr 100.0 3.9E-27 8.5E-32 234.8 24.5 228 48-310 103-331 (423)
47 KOG0278 Serine/threonine kinas 100.0 6.5E-28 1.4E-32 227.7 17.0 205 43-310 7-214 (334)
48 KOG0268 Sof1-like rRNA process 100.0 1.2E-27 2.5E-32 237.0 18.9 201 43-310 59-260 (433)
49 KOG0266 WD40 repeat-containing 100.0 7.9E-27 1.7E-31 259.7 27.1 256 27-340 180-441 (456)
50 KOG1407 WD40 repeat protein [F 100.0 1.9E-26 4.1E-31 219.5 24.8 206 44-310 14-220 (313)
51 KOG4227 WD40 repeat protein [G 100.0 3.2E-27 7E-32 235.2 19.9 247 11-308 19-273 (609)
52 KOG0284 Polyadenylation factor 100.0 7E-28 1.5E-32 242.0 13.8 242 39-341 127-370 (464)
53 KOG0273 Beta-transducin family 99.9 1.8E-26 3.9E-31 235.8 23.8 250 26-340 255-512 (524)
54 KOG0277 Peroxisomal targeting 99.9 2.7E-26 5.9E-31 217.6 22.7 201 54-310 12-222 (311)
55 KOG0772 Uncharacterized conser 99.9 1.7E-26 3.6E-31 237.9 23.1 233 41-311 158-396 (641)
56 KOG0281 Beta-TrCP (transducin 99.9 8.6E-28 1.9E-32 236.2 11.8 218 27-314 216-433 (499)
57 KOG0292 Vesicle coat complex C 99.9 1.8E-26 3.8E-31 250.5 22.8 277 27-339 30-310 (1202)
58 KOG0316 Conserved WD40 repeat- 99.9 3E-26 6.5E-31 214.9 20.9 256 25-344 36-293 (307)
59 PTZ00421 coronin; Provisional 99.9 1.6E-25 3.4E-30 248.4 29.1 232 44-333 69-315 (493)
60 KOG0306 WD40-repeat-containing 99.9 4.3E-25 9.3E-30 236.7 25.6 236 44-331 367-602 (888)
61 KOG0643 Translation initiation 99.9 2.3E-24 4.9E-29 205.9 26.8 238 45-337 5-247 (327)
62 KOG0277 Peroxisomal targeting 99.9 6.5E-26 1.4E-30 215.0 15.5 225 27-308 82-308 (311)
63 PLN00181 protein SPA1-RELATED; 99.9 2.8E-24 6.1E-29 256.7 32.8 188 71-310 457-649 (793)
64 KOG1539 WD repeat protein [Gen 99.9 4.2E-24 9.2E-29 231.8 28.9 247 38-311 232-525 (910)
65 KOG0276 Vesicle coat complex C 99.9 4.6E-25 9.9E-30 231.9 20.4 253 26-338 33-286 (794)
66 KOG0274 Cdc4 and related F-box 99.9 4.2E-24 9E-29 237.3 28.0 199 44-310 201-401 (537)
67 KOG0285 Pleiotropic regulator 99.9 1.4E-24 3.1E-29 214.6 21.3 256 24-310 169-440 (460)
68 KOG0265 U5 snRNP-specific prot 99.9 9.8E-25 2.1E-29 211.8 19.5 263 25-341 66-328 (338)
69 PTZ00420 coronin; Provisional 99.9 8.4E-24 1.8E-28 235.6 29.6 236 40-334 64-319 (568)
70 KOG0973 Histone transcription 99.9 4.4E-24 9.6E-29 239.2 25.4 241 46-331 8-275 (942)
71 KOG0296 Angio-associated migra 99.9 8.5E-24 1.8E-28 210.3 23.9 226 37-311 93-318 (399)
72 KOG0278 Serine/threonine kinas 99.9 4.5E-25 9.8E-30 208.5 13.5 209 39-311 48-256 (334)
73 KOG0641 WD40 repeat protein [G 99.9 1.9E-22 4E-27 188.0 30.7 222 39-310 22-262 (350)
74 PTZ00421 coronin; Provisional 99.9 3.4E-23 7.4E-28 229.8 29.7 211 49-310 19-246 (493)
75 KOG0645 WD40 repeat protein [G 99.9 1.6E-23 3.4E-28 200.8 22.8 229 24-309 79-311 (312)
76 KOG0282 mRNA splicing factor [ 99.9 1.9E-24 4.1E-29 222.1 17.3 257 23-336 232-489 (503)
77 PTZ00420 coronin; Provisional 99.9 1.2E-22 2.5E-27 226.5 31.2 193 67-310 49-249 (568)
78 KOG0283 WD40 repeat-containing 99.9 8E-24 1.7E-28 231.7 21.1 223 37-311 356-578 (712)
79 KOG0288 WD40 repeat protein Ti 99.9 1.6E-24 3.4E-29 218.4 14.1 264 15-339 184-449 (459)
80 KOG1273 WD40 repeat protein [G 99.9 9E-23 2E-27 199.0 23.4 202 53-310 26-227 (405)
81 KOG0647 mRNA export protein (c 99.9 8.5E-23 1.8E-27 198.5 21.6 267 48-339 25-311 (347)
82 KOG0313 Microtubule binding pr 99.9 4.7E-23 1E-27 205.9 20.2 253 26-330 123-398 (423)
83 KOG0289 mRNA splicing factor [ 99.9 2.1E-22 4.5E-27 204.1 25.0 201 51-310 220-420 (506)
84 KOG1332 Vesicle coat complex C 99.9 4.4E-23 9.6E-28 194.8 18.8 238 24-310 29-287 (299)
85 cd00200 WD40 WD40 domain, foun 99.9 3.8E-22 8.2E-27 206.8 28.1 249 27-338 30-278 (289)
86 KOG1332 Vesicle coat complex C 99.9 4.7E-23 1E-27 194.6 18.7 175 86-310 4-194 (299)
87 KOG0264 Nucleosome remodeling 99.9 4.5E-23 9.8E-28 211.1 20.1 231 39-310 166-405 (422)
88 KOG0301 Phospholipase A2-activ 99.9 2.1E-22 4.6E-27 214.9 25.4 204 40-310 4-209 (745)
89 KOG0275 Conserved WD40 repeat- 99.9 4.6E-23 1E-27 201.1 16.8 259 26-339 233-497 (508)
90 KOG0310 Conserved WD40 repeat- 99.9 8E-23 1.7E-27 210.6 19.5 241 40-340 58-298 (487)
91 KOG0310 Conserved WD40 repeat- 99.9 1.8E-22 3.9E-27 208.0 21.9 200 50-311 26-227 (487)
92 KOG0293 WD40 repeat-containing 99.9 6E-23 1.3E-27 206.6 17.7 239 37-310 256-514 (519)
93 KOG0299 U3 snoRNP-associated p 99.9 7.6E-22 1.6E-26 201.9 24.9 207 43-311 135-358 (479)
94 KOG0300 WD40 repeat-containing 99.9 1.2E-22 2.6E-27 197.9 17.8 244 24-331 166-454 (481)
95 KOG0300 WD40 repeat-containing 99.9 1.1E-22 2.3E-27 198.2 17.3 249 38-337 136-414 (481)
96 KOG0264 Nucleosome remodeling 99.9 3.6E-22 7.8E-27 204.5 20.1 219 48-314 122-352 (422)
97 KOG0274 Cdc4 and related F-box 99.9 6.6E-22 1.4E-26 219.8 23.3 223 27-319 227-451 (537)
98 KOG0268 Sof1-like rRNA process 99.9 2.3E-22 4.9E-27 199.7 17.3 220 24-311 85-304 (433)
99 KOG0973 Histone transcription 99.9 6.8E-22 1.5E-26 221.8 23.1 237 41-311 60-357 (942)
100 KOG0643 Translation initiation 99.9 9.7E-22 2.1E-26 188.0 20.8 237 39-310 41-318 (327)
101 KOG0305 Anaphase promoting com 99.9 8.9E-22 1.9E-26 210.8 22.0 256 27-345 196-455 (484)
102 KOG0294 WD40 repeat-containing 99.9 2.4E-21 5.2E-26 189.5 20.9 237 37-311 30-283 (362)
103 KOG0299 U3 snoRNP-associated p 99.9 1.6E-21 3.6E-26 199.4 19.9 242 47-339 199-443 (479)
104 KOG4283 Transcription-coupled 99.9 1.5E-21 3.3E-26 188.8 18.3 222 46-312 39-279 (397)
105 KOG0289 mRNA splicing factor [ 99.9 3.3E-21 7.1E-26 195.5 20.8 213 38-310 249-463 (506)
106 KOG0641 WD40 repeat protein [G 99.9 1.9E-20 4.2E-25 174.6 24.2 233 46-332 85-330 (350)
107 KOG0308 Conserved WD40 repeat- 99.9 7.9E-22 1.7E-26 209.0 16.4 252 48-347 19-281 (735)
108 KOG0269 WD40 repeat-containing 99.9 7.2E-22 1.6E-26 213.2 14.7 223 52-331 89-319 (839)
109 KOG0646 WD40 repeat protein [G 99.9 6E-21 1.3E-25 195.8 20.1 247 49-333 80-331 (476)
110 KOG0302 Ribosome Assembly prot 99.9 4E-21 8.6E-26 191.9 18.0 249 42-341 143-428 (440)
111 KOG1407 WD40 repeat protein [F 99.9 5.7E-20 1.2E-24 175.5 22.1 257 24-344 38-295 (313)
112 KOG0308 Conserved WD40 repeat- 99.9 4.2E-21 9.1E-26 203.5 15.9 252 27-329 46-305 (735)
113 KOG0772 Uncharacterized conser 99.9 1.1E-20 2.4E-25 195.2 18.3 271 24-344 185-480 (641)
114 KOG2096 WD40 repeat protein [G 99.9 7.4E-20 1.6E-24 179.0 23.0 191 74-308 63-257 (420)
115 KOG0305 Anaphase promoting com 99.9 1.3E-20 2.8E-25 201.9 19.2 223 26-311 237-463 (484)
116 KOG1446 Histone H3 (Lys4) meth 99.9 2.6E-19 5.6E-24 176.2 26.2 257 28-341 36-295 (311)
117 KOG2106 Uncharacterized conser 99.9 4.7E-19 1E-23 182.9 28.7 270 43-333 97-419 (626)
118 KOG1036 Mitotic spindle checkp 99.9 1.5E-19 3.3E-24 176.9 23.3 265 50-340 13-293 (323)
119 KOG2445 Nuclear pore complex c 99.8 2.3E-19 5E-24 175.1 23.9 259 47-310 10-319 (361)
120 KOG0650 WD40 repeat nucleolar 99.8 2.4E-19 5.3E-24 188.4 25.8 217 42-310 392-638 (733)
121 KOG0301 Phospholipase A2-activ 99.8 2.4E-20 5.1E-25 199.4 17.8 202 37-310 88-289 (745)
122 KOG0269 WD40 repeat-containing 99.8 1.1E-20 2.5E-25 203.9 15.1 218 39-312 122-343 (839)
123 KOG2445 Nuclear pore complex c 99.8 3.9E-19 8.4E-24 173.6 23.9 140 86-249 6-147 (361)
124 KOG0267 Microtubule severing p 99.8 2.6E-21 5.6E-26 207.3 8.6 204 36-300 56-259 (825)
125 KOG0270 WD40 repeat-containing 99.8 5.2E-20 1.1E-24 187.8 17.3 211 47-312 240-452 (463)
126 KOG1063 RNA polymerase II elon 99.8 2.2E-19 4.8E-24 191.9 22.6 286 25-336 166-587 (764)
127 KOG2919 Guanine nucleotide-bin 99.8 7.3E-19 1.6E-23 172.5 23.2 205 55-310 54-282 (406)
128 KOG1274 WD40 repeat protein [G 99.8 2E-18 4.4E-23 190.2 28.8 209 47-311 10-220 (933)
129 KOG0640 mRNA cleavage stimulat 99.8 8.8E-20 1.9E-24 177.7 15.4 234 40-308 162-425 (430)
130 KOG0302 Ribosome Assembly prot 99.8 9.5E-20 2.1E-24 182.1 16.0 231 38-306 199-435 (440)
131 KOG2096 WD40 repeat protein [G 99.8 9.5E-19 2.1E-23 171.3 21.8 250 43-336 79-388 (420)
132 KOG0646 WD40 repeat protein [G 99.8 1.1E-18 2.3E-23 179.4 21.8 196 63-310 51-248 (476)
133 KOG1408 WD40 repeat protein [F 99.8 2.6E-18 5.7E-23 183.4 25.0 234 27-312 345-629 (1080)
134 TIGR03866 PQQ_ABC_repeats PQQ- 99.8 8.1E-18 1.8E-22 177.5 28.7 186 62-311 1-189 (300)
135 KOG0294 WD40 repeat-containing 99.8 2.8E-18 6.1E-23 168.2 21.6 158 90-310 40-198 (362)
136 KOG0267 Microtubule severing p 99.8 3.9E-20 8.5E-25 198.3 9.0 235 44-339 22-256 (825)
137 KOG2106 Uncharacterized conser 99.8 1.1E-17 2.3E-22 173.0 26.2 233 44-334 239-504 (626)
138 KOG1408 WD40 repeat protein [F 99.8 5.3E-19 1.1E-23 188.6 16.8 257 48-353 457-715 (1080)
139 KOG1036 Mitotic spindle checkp 99.8 9.2E-18 2E-22 164.4 23.8 155 90-310 10-164 (323)
140 KOG0639 Transducin-like enhanc 99.8 2E-18 4.4E-23 177.8 18.9 212 39-311 409-624 (705)
141 KOG4328 WD40 protein [Function 99.8 3E-18 6.4E-23 175.5 19.0 218 40-309 176-399 (498)
142 KOG4283 Transcription-coupled 99.8 2.1E-17 4.5E-22 160.3 22.7 180 47-249 98-279 (397)
143 KOG0303 Actin-binding protein 99.8 3.1E-18 6.7E-23 172.2 17.6 230 45-333 76-321 (472)
144 KOG1539 WD repeat protein [Gen 99.8 5E-17 1.1E-21 177.3 28.3 245 27-312 181-433 (910)
145 KOG0642 Cell-cycle nuclear pro 99.8 2.5E-18 5.3E-23 180.5 17.5 249 36-311 280-563 (577)
146 KOG0270 WD40 repeat-containing 99.8 2.8E-18 6.1E-23 175.2 17.3 203 53-312 176-407 (463)
147 KOG0647 mRNA export protein (c 99.8 2.4E-17 5.2E-22 160.8 22.0 238 24-299 46-313 (347)
148 KOG4378 Nuclear protein COP1 [ 99.8 5.2E-18 1.1E-22 174.6 18.3 229 43-333 74-305 (673)
149 KOG2055 WD40 repeat protein [G 99.8 3.2E-17 6.8E-22 168.1 23.6 202 50-310 213-418 (514)
150 KOG0321 WD40 repeat-containing 99.8 2E-17 4.3E-22 175.5 21.0 261 44-339 94-378 (720)
151 KOG2048 WD40 repeat protein [G 99.8 1.3E-16 2.8E-21 170.8 27.0 241 47-339 22-263 (691)
152 KOG1007 WD repeat protein TSSC 99.8 6.5E-17 1.4E-21 156.6 19.1 239 36-310 108-362 (370)
153 KOG0639 Transducin-like enhanc 99.8 1.6E-17 3.4E-22 171.3 15.7 222 50-308 465-703 (705)
154 KOG1274 WD40 repeat protein [G 99.8 1.4E-16 3E-21 175.8 24.1 255 27-339 34-288 (933)
155 KOG0644 Uncharacterized conser 99.7 9.7E-18 2.1E-22 182.2 12.0 281 30-349 170-466 (1113)
156 KOG0307 Vesicle coat complex C 99.7 2.3E-17 5E-22 186.3 14.5 239 41-334 56-309 (1049)
157 KOG0290 Conserved WD40 repeat- 99.7 1.1E-16 2.5E-21 155.2 16.9 233 48-332 94-346 (364)
158 KOG1034 Transcriptional repres 99.7 1.1E-16 2.4E-21 157.8 16.1 241 37-309 122-383 (385)
159 KOG0307 Vesicle coat complex C 99.7 2.7E-17 5.8E-22 185.9 11.8 219 38-312 104-330 (1049)
160 KOG1034 Transcriptional repres 99.7 5.5E-17 1.2E-21 159.9 12.1 271 48-340 87-372 (385)
161 KOG1445 Tumor-specific antigen 99.7 7.5E-15 1.6E-19 155.3 28.4 216 39-311 68-295 (1012)
162 KOG1273 WD40 repeat protein [G 99.7 1.3E-15 2.7E-20 149.4 20.5 266 26-339 43-311 (405)
163 KOG4328 WD40 protein [Function 99.7 6E-16 1.3E-20 158.8 18.0 263 28-339 210-482 (498)
164 KOG0303 Actin-binding protein 99.7 6.9E-16 1.5E-20 155.5 18.0 179 90-319 78-259 (472)
165 TIGR03866 PQQ_ABC_repeats PQQ- 99.7 4.7E-15 1E-19 156.4 25.1 252 27-339 10-266 (300)
166 KOG1517 Guanine nucleotide bin 99.7 4.6E-15 9.9E-20 165.4 23.0 216 48-310 1062-1288(1387)
167 KOG4378 Nuclear protein COP1 [ 99.7 1.5E-15 3.3E-20 156.7 17.9 212 24-296 97-309 (673)
168 KOG1007 WD repeat protein TSSC 99.7 1.3E-15 2.9E-20 147.6 16.0 215 43-310 56-290 (370)
169 KOG1009 Chromatin assembly com 99.6 5E-15 1.1E-19 150.1 17.6 142 25-179 33-196 (434)
170 KOG1963 WD40 repeat protein [G 99.6 1.4E-13 3E-18 152.3 30.1 237 28-312 37-378 (792)
171 KOG1188 WD40 repeat protein [G 99.6 1.3E-14 2.7E-19 144.2 18.4 199 63-312 41-245 (376)
172 KOG1240 Protein kinase contain 99.6 9E-14 1.9E-18 157.7 27.5 227 36-312 1034-1276(1431)
173 KOG1538 Uncharacterized conser 99.6 6.1E-15 1.3E-19 156.8 16.3 241 52-311 14-295 (1081)
174 COG2319 FOG: WD40 repeat [Gene 99.6 9.9E-13 2.2E-17 143.8 34.7 209 45-312 60-274 (466)
175 COG2319 FOG: WD40 repeat [Gene 99.6 1.8E-12 3.9E-17 141.8 36.2 226 27-312 86-317 (466)
176 KOG1009 Chromatin assembly com 99.6 7.4E-15 1.6E-19 148.9 15.2 229 50-314 13-274 (434)
177 KOG1524 WD40 repeat-containing 99.6 3.9E-15 8.5E-20 155.0 13.1 192 38-306 92-283 (737)
178 KOG2055 WD40 repeat protein [G 99.6 1.9E-14 4E-19 148.0 17.2 229 28-310 280-513 (514)
179 KOG0771 Prolactin regulatory e 99.6 1.3E-14 2.8E-19 148.3 15.4 202 54-310 148-355 (398)
180 KOG2048 WD40 repeat protein [G 99.6 2.1E-13 4.5E-18 146.6 25.1 239 41-332 59-302 (691)
181 KOG2919 Guanine nucleotide-bin 99.6 5.8E-14 1.3E-18 138.4 19.1 236 51-340 105-359 (406)
182 KOG1445 Tumor-specific antigen 99.6 9E-15 2E-19 154.7 14.3 204 51-311 628-846 (1012)
183 KOG0290 Conserved WD40 repeat- 99.6 4.2E-14 9E-19 137.5 17.3 204 48-300 148-357 (364)
184 KOG1523 Actin-related protein 99.6 1.3E-13 2.7E-18 136.1 20.4 231 45-312 5-239 (361)
185 KOG0322 G-protein beta subunit 99.6 3.1E-14 6.8E-19 136.7 14.7 241 42-308 6-322 (323)
186 KOG1587 Cytoplasmic dynein int 99.6 1.8E-13 3.8E-18 151.5 21.4 235 30-310 224-517 (555)
187 KOG1587 Cytoplasmic dynein int 99.6 2.7E-12 5.8E-17 142.2 29.9 206 71-309 221-428 (555)
188 KOG1188 WD40 repeat protein [G 99.6 8.1E-14 1.8E-18 138.6 15.5 248 29-310 51-347 (376)
189 KOG1310 WD40 repeat protein [G 99.5 2.1E-11 4.5E-16 127.9 28.5 218 27-250 71-307 (758)
190 PRK01742 tolB translocation pr 99.5 2.2E-12 4.7E-17 143.4 21.9 224 43-333 196-427 (429)
191 KOG1538 Uncharacterized conser 99.5 1.9E-12 4.2E-17 138.0 18.8 172 95-332 14-187 (1081)
192 KOG0649 WD40 repeat protein [G 99.5 4.2E-12 9.1E-17 120.8 19.1 231 52-330 12-255 (325)
193 KOG1240 Protein kinase contain 99.4 1.4E-11 3E-16 140.3 24.6 193 77-311 1034-1227(1431)
194 KOG1517 Guanine nucleotide bin 99.4 3.6E-12 7.8E-17 142.7 19.5 261 6-311 1107-1383(1387)
195 KOG2110 Uncharacterized conser 99.4 4.9E-11 1.1E-15 120.3 25.5 217 51-310 88-331 (391)
196 KOG1523 Actin-related protein 99.4 3.4E-12 7.4E-17 126.1 16.8 205 26-248 30-238 (361)
197 KOG0644 Uncharacterized conser 99.4 1.5E-13 3.3E-18 149.9 8.1 247 27-312 211-471 (1113)
198 PRK11028 6-phosphogluconolacto 99.4 8.7E-11 1.9E-15 126.2 29.5 196 65-310 5-206 (330)
199 KOG0642 Cell-cycle nuclear pro 99.4 1.4E-12 3E-17 137.7 14.7 194 25-247 313-562 (577)
200 KOG4227 WD40 repeat protein [G 99.4 1.6E-11 3.5E-16 123.7 20.7 261 37-310 90-388 (609)
201 KOG0649 WD40 repeat protein [G 99.4 1.9E-11 4E-16 116.4 18.7 210 42-310 54-275 (325)
202 KOG4497 Uncharacterized conser 99.4 1E-11 2.3E-16 122.8 17.3 113 55-181 13-125 (447)
203 PRK11028 6-phosphogluconolacto 99.4 1.6E-10 3.6E-15 124.1 27.6 270 27-340 11-292 (330)
204 KOG0650 WD40 repeat nucleolar 99.4 1.3E-11 2.9E-16 130.8 15.7 213 44-306 515-732 (733)
205 KOG1524 WD40 repeat-containing 99.3 8.4E-12 1.8E-16 130.5 13.5 206 63-346 76-281 (737)
206 KOG0771 Prolactin regulatory e 99.3 2.1E-11 4.5E-16 125.1 14.9 188 97-337 148-340 (398)
207 PRK03629 tolB translocation pr 99.3 3.8E-10 8.1E-15 125.3 26.3 221 44-331 192-427 (429)
208 PRK04922 tolB translocation pr 99.3 2.1E-10 4.5E-15 127.8 23.3 204 42-311 195-413 (433)
209 KOG2139 WD40 repeat protein [G 99.3 2.5E-10 5.4E-15 114.7 20.9 228 46-310 192-432 (445)
210 PRK05137 tolB translocation pr 99.3 3.8E-10 8.2E-15 125.9 24.7 205 42-312 193-415 (435)
211 PRK02889 tolB translocation pr 99.3 3.8E-10 8.2E-15 125.4 23.4 227 43-332 188-425 (427)
212 KOG3881 Uncharacterized conser 99.3 2.4E-10 5.1E-15 116.2 18.1 227 45-334 100-344 (412)
213 KOG2139 WD40 repeat protein [G 99.2 3.6E-10 7.9E-15 113.5 18.3 207 50-310 98-310 (445)
214 KOG2394 WD40 protein DMR-N9 [G 99.2 1.3E-10 2.8E-15 122.1 15.5 180 60-288 183-383 (636)
215 KOG0322 G-protein beta subunit 99.2 7.1E-11 1.5E-15 113.9 12.6 163 48-245 148-322 (323)
216 KOG2110 Uncharacterized conser 99.2 7.8E-10 1.7E-14 111.7 20.2 195 52-311 48-250 (391)
217 KOG1272 WD40-repeat-containing 99.2 2.4E-11 5.2E-16 125.5 9.5 214 52-331 131-344 (545)
218 KOG2111 Uncharacterized conser 99.2 6.8E-09 1.5E-13 103.1 24.9 186 23-249 69-259 (346)
219 KOG2321 WD40 repeat protein [G 99.2 4.4E-10 9.5E-15 119.0 17.5 259 29-339 31-331 (703)
220 KOG2111 Uncharacterized conser 99.2 1.6E-09 3.5E-14 107.5 19.7 220 53-311 8-258 (346)
221 KOG2394 WD40 protein DMR-N9 [G 99.2 3.6E-11 7.8E-16 126.2 8.6 104 41-157 281-384 (636)
222 PF08662 eIF2A: Eukaryotic tra 99.2 9.4E-10 2E-14 107.9 18.0 148 55-246 10-179 (194)
223 KOG1963 WD40 repeat protein [G 99.2 2E-09 4.4E-14 119.8 22.0 270 24-310 223-539 (792)
224 KOG1272 WD40-repeat-containing 99.2 3.3E-11 7.2E-16 124.5 6.6 217 51-334 171-392 (545)
225 PRK01742 tolB translocation pr 99.2 8.6E-10 1.9E-14 122.7 18.1 202 71-341 183-391 (429)
226 KOG1354 Serine/threonine prote 99.2 1.1E-09 2.4E-14 109.4 16.2 236 50-314 25-306 (433)
227 PF02239 Cytochrom_D1: Cytochr 99.1 5.4E-08 1.2E-12 105.1 30.4 198 63-312 6-205 (369)
228 KOG0280 Uncharacterized conser 99.1 2.9E-09 6.3E-14 104.5 17.8 229 49-333 68-309 (339)
229 TIGR02800 propeller_TolB tol-p 99.1 6.8E-09 1.5E-13 115.4 23.4 203 42-310 181-398 (417)
230 KOG1334 WD40 repeat protein [G 99.1 1.2E-09 2.6E-14 113.7 14.4 267 44-339 179-454 (559)
231 PF08662 eIF2A: Eukaryotic tra 99.1 2.7E-09 5.8E-14 104.7 16.1 112 49-179 58-180 (194)
232 PRK05137 tolB translocation pr 99.1 1.3E-08 2.8E-13 113.6 23.3 203 72-340 182-395 (435)
233 KOG3881 Uncharacterized conser 99.1 5.6E-09 1.2E-13 106.3 17.6 166 51-251 149-325 (412)
234 PRK00178 tolB translocation pr 99.1 2.5E-08 5.4E-13 111.3 24.5 203 43-310 191-407 (430)
235 PRK04922 tolB translocation pr 99.1 7.5E-09 1.6E-13 115.4 19.8 203 72-340 184-397 (433)
236 KOG0974 WD-repeat protein WDR6 99.0 6.8E-09 1.5E-13 117.5 18.1 191 61-312 98-291 (967)
237 KOG0974 WD-repeat protein WDR6 99.0 2.2E-09 4.8E-14 121.5 14.1 151 57-248 140-290 (967)
238 PRK04792 tolB translocation pr 99.0 3.7E-08 7.9E-13 109.9 23.6 221 45-331 212-446 (448)
239 KOG4497 Uncharacterized conser 99.0 1.7E-08 3.7E-13 100.4 18.0 270 51-342 49-382 (447)
240 KOG0280 Uncharacterized conser 99.0 7.7E-09 1.7E-13 101.6 14.8 207 53-310 124-334 (339)
241 PRK02889 tolB translocation pr 99.0 2.1E-08 4.5E-13 111.5 20.2 205 72-340 176-389 (427)
242 KOG0553 TPR repeat-containing 99.0 1.7E-09 3.7E-14 107.8 10.1 117 359-485 77-193 (304)
243 PRK03629 tolB translocation pr 99.0 6.6E-08 1.4E-12 107.4 22.8 203 73-341 180-393 (429)
244 KOG1354 Serine/threonine prote 98.9 1E-08 2.2E-13 102.6 13.1 243 51-315 85-365 (433)
245 KOG2321 WD40 repeat protein [G 98.9 2E-08 4.2E-13 106.8 15.6 196 62-312 146-346 (703)
246 TIGR02800 propeller_TolB tol-p 98.9 1.4E-07 3E-12 105.0 22.6 202 72-339 170-382 (417)
247 PRK01029 tolB translocation pr 98.9 5.3E-07 1.1E-11 99.9 25.3 231 45-332 179-425 (428)
248 KOG1409 Uncharacterized conser 98.9 2.7E-08 5.9E-13 99.8 13.2 245 37-310 101-395 (404)
249 PF02239 Cytochrom_D1: Cytochr 98.9 1.9E-07 4.1E-12 100.9 20.8 263 37-339 23-333 (369)
250 KOG2314 Translation initiation 98.9 1.6E-06 3.5E-11 92.2 26.6 218 53-335 213-459 (698)
251 KOG1409 Uncharacterized conser 98.8 5.5E-08 1.2E-12 97.6 14.5 244 38-311 12-272 (404)
252 KOG1064 RAVE (regulator of V-A 98.8 1.8E-08 4E-13 119.0 11.9 194 46-311 2204-2400(2439)
253 KOG2315 Predicted translation 98.8 1.3E-06 2.7E-11 93.4 23.9 220 52-334 36-283 (566)
254 COG5170 CDC55 Serine/threonine 98.8 1.8E-07 3.8E-12 92.6 14.5 237 49-314 25-314 (460)
255 KOG0309 Conserved WD40 repeat- 98.8 3.1E-08 6.8E-13 107.8 10.1 240 50-342 24-266 (1081)
256 KOG4532 WD40-like repeat conta 98.7 2E-06 4.3E-11 83.9 20.9 211 55-318 72-291 (344)
257 PRK00178 tolB translocation pr 98.7 1.2E-06 2.6E-11 97.8 21.4 202 73-340 180-392 (430)
258 KOG4190 Uncharacterized conser 98.7 9.1E-08 2E-12 100.9 10.4 172 44-253 729-913 (1034)
259 KOG0309 Conserved WD40 repeat- 98.7 6.3E-08 1.4E-12 105.5 9.5 141 29-181 93-235 (1081)
260 PRK04792 tolB translocation pr 98.7 2E-06 4.4E-11 96.0 21.8 201 73-339 199-410 (448)
261 KOG4234 TPR repeat-containing 98.7 1.1E-07 2.4E-12 88.8 9.5 123 360-488 92-215 (271)
262 KOG4714 Nucleoporin [Nuclear s 98.7 2E-07 4.4E-12 90.2 11.4 170 41-247 80-255 (319)
263 COG5354 Uncharacterized protei 98.6 6.8E-06 1.5E-10 86.9 23.1 224 49-336 31-289 (561)
264 PF00400 WD40: WD domain, G-be 98.6 7.4E-08 1.6E-12 67.6 5.8 38 41-78 2-39 (39)
265 KOG4547 WD40 repeat-containing 98.6 1.9E-06 4.1E-11 92.8 17.7 192 59-310 2-221 (541)
266 PLN02919 haloacid dehalogenase 98.6 1.2E-05 2.7E-10 98.1 27.3 243 53-312 626-891 (1057)
267 KOG3914 WD repeat protein WDR4 98.6 8.4E-07 1.8E-11 91.3 14.3 162 51-254 63-231 (390)
268 KOG1832 HIV-1 Vpr-binding prot 98.5 8.4E-08 1.8E-12 106.3 5.9 231 9-310 1059-1292(1516)
269 PF10282 Lactonase: Lactonase, 98.5 3E-05 6.5E-10 83.7 25.6 230 39-310 75-323 (345)
270 KOG1912 WD40 repeat protein [G 98.5 5.2E-06 1.1E-10 91.5 18.8 244 52-339 17-290 (1062)
271 PF10282 Lactonase: Lactonase, 98.5 4.6E-05 1E-09 82.3 26.1 262 38-341 25-311 (345)
272 KOG1064 RAVE (regulator of V-A 98.5 3.4E-07 7.5E-12 108.7 9.7 152 51-254 2252-2406(2439)
273 KOG3914 WD repeat protein WDR4 98.5 6.7E-07 1.5E-11 92.0 9.9 102 67-183 127-228 (390)
274 KOG2315 Predicted translation 98.5 2.4E-05 5.1E-10 83.9 21.4 196 49-311 164-392 (566)
275 TIGR02658 TTQ_MADH_Hv methylam 98.4 0.00011 2.3E-09 78.0 25.5 237 38-315 35-336 (352)
276 PF15492 Nbas_N: Neuroblastoma 98.4 0.00011 2.3E-09 73.3 23.5 232 55-312 2-262 (282)
277 PLN02919 haloacid dehalogenase 98.4 7.5E-05 1.6E-09 91.4 27.6 233 54-312 571-836 (1057)
278 KOG4190 Uncharacterized conser 98.4 8.6E-07 1.9E-11 93.7 9.1 182 85-312 728-909 (1034)
279 KOG4532 WD40-like repeat conta 98.4 2.4E-05 5.2E-10 76.5 17.8 199 64-310 130-332 (344)
280 KOG0882 Cyclophilin-related pe 98.4 4.1E-06 8.9E-11 87.1 13.2 263 24-311 26-307 (558)
281 COG5170 CDC55 Serine/threonine 98.4 3.5E-06 7.7E-11 83.6 12.0 233 51-310 86-368 (460)
282 COG4946 Uncharacterized protei 98.4 4.1E-05 9E-10 80.2 19.9 120 48-182 357-481 (668)
283 PF15492 Nbas_N: Neuroblastoma 98.3 7.1E-05 1.5E-09 74.5 20.1 195 51-255 44-268 (282)
284 PRK01029 tolB translocation pr 98.3 2.7E-05 5.9E-10 86.4 19.5 164 49-249 229-406 (428)
285 KOG2695 WD40 repeat protein [G 98.3 1.4E-06 3E-11 87.8 7.9 162 99-312 217-379 (425)
286 KOG4714 Nucleoporin [Nuclear s 98.3 2.4E-06 5.3E-11 82.9 9.0 167 60-244 142-316 (319)
287 COG2706 3-carboxymuconate cycl 98.3 0.0007 1.5E-08 69.6 27.0 253 47-344 36-313 (346)
288 PF00400 WD40: WD domain, G-be 98.3 2.2E-06 4.7E-11 60.0 6.5 39 82-123 1-39 (39)
289 KOG4547 WD40 repeat-containing 98.3 1.7E-05 3.7E-10 85.6 15.8 128 37-179 87-221 (541)
290 TIGR02658 TTQ_MADH_Hv methylam 98.2 0.00067 1.5E-08 72.1 26.4 234 72-334 27-311 (352)
291 KOG2041 WD40 repeat protein [G 98.2 1.2E-05 2.6E-10 87.8 13.3 253 36-339 57-326 (1189)
292 KOG2041 WD40 repeat protein [G 98.2 9.9E-06 2.2E-10 88.4 12.6 241 50-340 14-277 (1189)
293 PRK04043 tolB translocation pr 98.2 0.00045 9.7E-09 76.3 26.0 193 52-311 189-402 (419)
294 KOG1275 PAB-dependent poly(A) 98.2 2.6E-05 5.7E-10 87.7 16.2 186 61-307 146-340 (1118)
295 COG4946 Uncharacterized protei 98.2 0.00032 6.9E-09 73.8 21.1 190 59-313 275-481 (668)
296 KOG0548 Molecular co-chaperone 98.1 1.4E-05 3E-10 85.9 10.4 115 359-483 354-468 (539)
297 KOG2695 WD40 repeat protein [G 98.1 1.4E-05 3.1E-10 80.6 9.0 163 57-254 218-384 (425)
298 PF08450 SGL: SMP-30/Gluconola 98.1 0.0015 3.2E-08 66.9 24.1 220 55-334 4-238 (246)
299 KOG2066 Vacuolar assembly/sort 98.0 0.00025 5.5E-09 79.3 18.9 166 45-247 53-234 (846)
300 KOG1912 WD40 repeat protein [G 98.0 0.00022 4.8E-09 79.2 17.6 233 37-310 42-305 (1062)
301 KOG0882 Cyclophilin-related pe 98.0 6.5E-05 1.4E-09 78.5 12.9 221 49-314 8-236 (558)
302 PF04762 IKI3: IKI3 family; I 98.0 0.00037 7.9E-09 83.9 21.1 219 49-311 208-458 (928)
303 PRK04043 tolB translocation pr 98.0 0.001 2.2E-08 73.5 22.0 201 73-341 170-387 (419)
304 KOG2314 Translation initiation 98.0 0.00056 1.2E-08 73.4 18.5 73 51-126 250-335 (698)
305 COG5354 Uncharacterized protei 97.9 0.0015 3.2E-08 69.7 20.3 249 51-338 72-376 (561)
306 KOG1645 RING-finger-containing 97.9 0.00049 1.1E-08 71.2 16.2 88 39-129 182-270 (463)
307 KOG2066 Vacuolar assembly/sort 97.9 0.0005 1.1E-08 77.0 17.0 192 50-310 39-234 (846)
308 KOG1008 Uncharacterized conser 97.9 1.1E-05 2.5E-10 87.5 4.1 227 45-310 97-336 (783)
309 KOG1008 Uncharacterized conser 97.9 1.2E-05 2.5E-10 87.4 4.1 210 50-310 56-276 (783)
310 KOG1275 PAB-dependent poly(A) 97.8 0.00026 5.6E-09 80.1 13.6 169 38-246 165-342 (1118)
311 KOG3621 WD40 repeat-containing 97.8 0.0014 3E-08 72.7 18.4 123 49-179 32-155 (726)
312 PF08450 SGL: SMP-30/Gluconola 97.8 0.0068 1.5E-07 62.0 23.0 189 53-298 42-244 (246)
313 PF11768 DUF3312: Protein of u 97.8 0.00082 1.8E-08 73.5 16.3 127 39-181 195-332 (545)
314 PF07433 DUF1513: Protein of u 97.7 0.0092 2E-07 61.5 22.3 216 54-312 8-250 (305)
315 COG2706 3-carboxymuconate cycl 97.7 0.0033 7.1E-08 64.8 18.8 201 71-311 15-223 (346)
316 KOG0543 FKBP-type peptidyl-pro 97.7 0.00023 4.9E-09 74.7 9.9 128 361-492 206-342 (397)
317 KOG2114 Vacuolar assembly/sort 97.7 0.0057 1.2E-07 69.4 21.3 210 57-319 30-252 (933)
318 PF04762 IKI3: IKI3 family; I 97.6 0.012 2.5E-07 71.2 25.5 263 27-310 236-520 (928)
319 PF07433 DUF1513: Protein of u 97.6 0.0056 1.2E-07 63.0 19.5 210 43-306 49-282 (305)
320 KOG0547 Translocase of outer m 97.6 0.00011 2.4E-09 78.0 7.0 95 359-464 111-206 (606)
321 PLN03088 SGT1, suppressor of 97.6 0.00057 1.2E-08 73.9 12.8 115 365-489 4-118 (356)
322 PF06977 SdiA-regulated: SdiA- 97.6 0.0065 1.4E-07 61.5 19.2 231 43-306 14-247 (248)
323 KOG4648 Uncharacterized conser 97.5 0.00023 5E-09 72.2 7.3 116 360-485 94-209 (536)
324 KOG0551 Hsp90 co-chaperone CNS 97.5 0.0003 6.5E-09 71.4 8.1 96 364-465 82-177 (390)
325 smart00320 WD40 WD40 repeats. 97.5 0.0002 4.4E-09 48.4 5.1 38 41-78 3-40 (40)
326 PF11768 DUF3312: Protein of u 97.5 0.00048 1E-08 75.2 9.6 74 48-126 257-330 (545)
327 KOG0550 Molecular chaperone (D 97.5 0.00053 1.1E-08 71.6 9.4 105 358-468 244-348 (486)
328 KOG0376 Serine-threonine phosp 97.5 0.00047 1E-08 73.7 9.2 122 363-494 4-125 (476)
329 KOG0548 Molecular co-chaperone 97.4 0.00086 1.9E-08 72.4 9.8 112 364-485 3-114 (539)
330 PF13360 PQQ_2: PQQ-like domai 97.3 0.016 3.5E-07 58.6 18.7 193 61-312 35-233 (238)
331 KOG1832 HIV-1 Vpr-binding prot 97.3 0.00028 6.1E-09 79.3 5.5 163 84-311 1093-1257(1516)
332 TIGR03300 assembly_YfgL outer 97.3 0.038 8.2E-07 60.5 22.4 104 61-182 104-212 (377)
333 KOG1645 RING-finger-containing 97.3 0.0022 4.7E-08 66.6 11.3 97 74-183 175-271 (463)
334 KOG4642 Chaperone-dependent E3 97.3 0.00047 1E-08 66.9 5.9 97 361-467 8-104 (284)
335 TIGR03300 assembly_YfgL outer 97.2 0.027 5.8E-07 61.6 20.2 104 61-182 64-167 (377)
336 KOG1920 IkappaB kinase complex 97.2 0.077 1.7E-06 62.8 23.2 210 50-310 68-323 (1265)
337 KOG2114 Vacuolar assembly/sort 97.0 0.04 8.8E-07 62.8 18.0 170 95-312 27-204 (933)
338 PF13360 PQQ_2: PQQ-like domai 96.9 0.11 2.3E-06 52.5 20.2 192 70-312 1-194 (238)
339 PF08553 VID27: VID27 cytoplas 96.8 0.072 1.6E-06 62.3 19.6 212 63-310 494-725 (794)
340 smart00320 WD40 WD40 repeats. 96.8 0.0037 8E-08 41.8 5.3 38 83-123 3-40 (40)
341 PF14783 BBS2_Mid: Ciliary BBS 96.7 0.088 1.9E-06 45.6 13.9 104 95-241 1-109 (111)
342 PRK02888 nitrous-oxide reducta 96.6 0.043 9.3E-07 61.9 14.8 165 57-247 199-405 (635)
343 KOG4640 Anaphase-promoting com 96.6 0.01 2.2E-07 65.4 9.5 74 50-127 20-94 (665)
344 KOG4649 PQQ (pyrrolo-quinoline 96.6 0.32 6.8E-06 48.3 18.8 61 62-126 63-124 (354)
345 PF14783 BBS2_Mid: Ciliary BBS 96.5 0.14 3E-06 44.5 14.3 101 53-173 2-109 (111)
346 KOG3617 WD40 and TPR repeat-co 96.5 0.012 2.6E-07 66.4 9.5 110 54-179 19-132 (1416)
347 PF04841 Vps16_N: Vps16, N-ter 96.4 1.4 3.1E-05 48.6 25.3 65 56-125 34-109 (410)
348 COG3204 Uncharacterized protei 96.3 0.69 1.5E-05 47.1 19.9 184 46-247 81-264 (316)
349 PF08596 Lgl_C: Lethal giant l 96.1 0.2 4.3E-06 54.7 16.6 227 34-309 70-335 (395)
350 COG3391 Uncharacterized conser 96.1 0.9 2E-05 49.7 22.0 204 52-311 75-285 (381)
351 KOG3617 WD40 and TPR repeat-co 96.1 0.092 2E-06 59.6 13.5 71 53-126 62-132 (1416)
352 PF08553 VID27: VID27 cytoplas 96.0 0.39 8.6E-06 56.3 18.7 133 31-178 505-647 (794)
353 KOG1920 IkappaB kinase complex 95.9 0.26 5.6E-06 58.7 16.7 155 54-245 199-364 (1265)
354 PRK11138 outer membrane biogen 95.9 0.34 7.3E-06 53.4 17.4 181 64-308 207-393 (394)
355 PF00930 DPPIV_N: Dipeptidyl p 95.8 0.22 4.7E-06 53.9 15.3 255 59-339 1-298 (353)
356 PRK11138 outer membrane biogen 95.8 0.83 1.8E-05 50.3 20.1 201 61-312 68-277 (394)
357 PF08596 Lgl_C: Lethal giant l 95.7 1.8 3.9E-05 47.4 21.7 122 52-178 3-173 (395)
358 PF03178 CPSF_A: CPSF A subuni 95.7 1.8 3.8E-05 46.2 21.6 146 62-246 42-202 (321)
359 PRK15359 type III secretion sy 95.7 0.24 5.3E-06 45.9 12.9 97 369-475 30-126 (144)
360 KOG3621 WD40 repeat-containing 95.6 0.08 1.7E-06 59.2 10.8 124 146-310 32-155 (726)
361 PF00930 DPPIV_N: Dipeptidyl p 95.6 1.3 2.8E-05 48.0 20.2 72 50-124 42-130 (353)
362 KOG4640 Anaphase-promoting com 95.5 0.055 1.2E-06 59.8 9.0 77 93-183 20-97 (665)
363 PF02897 Peptidase_S9_N: Proly 95.5 3.8 8.2E-05 45.3 24.2 117 52-180 125-262 (414)
364 TIGR00990 3a0801s09 mitochondr 95.5 0.065 1.4E-06 62.8 10.4 95 363-468 127-221 (615)
365 PF12894 Apc4_WD40: Anaphase-p 95.5 0.04 8.6E-07 40.0 5.2 34 50-84 11-44 (47)
366 PF04053 Coatomer_WDAD: Coatom 95.4 1.1 2.4E-05 49.8 19.0 221 44-336 26-247 (443)
367 COG0823 TolB Periplasmic compo 95.3 0.88 1.9E-05 50.3 17.6 121 44-176 186-310 (425)
368 PF06977 SdiA-regulated: SdiA- 95.3 2.1 4.6E-05 43.5 18.9 183 90-310 18-202 (248)
369 TIGR02552 LcrH_SycD type III s 95.2 0.35 7.5E-06 43.9 12.2 111 358-478 12-122 (135)
370 KOG2395 Protein involved in va 95.0 1.1 2.5E-05 48.9 16.5 203 65-310 349-574 (644)
371 PRK10370 formate-dependent nit 94.9 0.48 1E-05 46.6 12.9 111 358-476 68-179 (198)
372 COG0823 TolB Periplasmic compo 94.7 1.2 2.7E-05 49.1 16.6 195 82-339 182-387 (425)
373 COG3391 Uncharacterized conser 94.6 7.6 0.00016 42.5 22.7 231 52-338 32-269 (381)
374 PRK02888 nitrous-oxide reducta 94.4 1.4 3E-05 50.2 16.4 84 217-310 322-405 (635)
375 KOG4441 Proteins containing BT 94.4 1.7 3.7E-05 50.1 17.6 109 59-181 282-407 (571)
376 PF04053 Coatomer_WDAD: Coatom 94.4 0.9 1.9E-05 50.4 14.7 143 92-310 31-174 (443)
377 KOG2444 WD40 repeat protein [G 94.3 0.13 2.8E-06 50.2 6.9 107 62-180 70-179 (238)
378 PHA02713 hypothetical protein; 94.1 1.8 4E-05 49.9 17.2 64 61-127 303-377 (557)
379 cd00216 PQQ_DH Dehydrogenases 94.0 6.2 0.00013 44.8 21.1 63 62-127 61-130 (488)
380 COG3490 Uncharacterized protei 93.9 5 0.00011 40.8 17.2 223 55-312 72-313 (366)
381 KOG2079 Vacuolar assembly/sort 93.9 0.12 2.6E-06 60.5 6.9 88 36-126 116-204 (1206)
382 PF10168 Nup88: Nuclear pore c 93.6 3.1 6.6E-05 49.1 17.9 99 214-314 83-184 (717)
383 PF03178 CPSF_A: CPSF A subuni 93.5 5 0.00011 42.7 18.4 123 39-179 78-203 (321)
384 cd00216 PQQ_DH Dehydrogenases 93.4 11 0.00024 42.7 21.8 65 63-127 111-185 (488)
385 KOG2444 WD40 repeat protein [G 93.3 0.19 4.1E-06 49.0 6.2 67 159-249 69-135 (238)
386 PF06433 Me-amine-dh_H: Methyl 93.2 7.9 0.00017 40.8 18.3 219 54-319 98-330 (342)
387 KOG2395 Protein involved in va 93.1 0.98 2.1E-05 49.3 11.5 133 31-179 357-501 (644)
388 KOG0545 Aryl-hydrocarbon recep 93.0 0.69 1.5E-05 45.7 9.4 110 363-476 178-299 (329)
389 PF13414 TPR_11: TPR repeat; P 93.0 0.12 2.6E-06 40.8 3.7 52 421-472 17-69 (69)
390 PF12234 Rav1p_C: RAVE protein 92.9 2.4 5.3E-05 48.6 15.1 122 52-177 31-155 (631)
391 KOG2079 Vacuolar assembly/sort 92.8 0.26 5.6E-06 57.9 7.4 103 61-177 98-202 (1206)
392 KOG4441 Proteins containing BT 92.8 5.1 0.00011 46.3 17.9 147 61-249 332-502 (571)
393 KOG4649 PQQ (pyrrolo-quinoline 92.6 6.6 0.00014 39.3 15.6 104 62-181 23-126 (354)
394 PF04841 Vps16_N: Vps16, N-ter 92.6 19 0.00042 39.7 28.9 34 216-250 217-250 (410)
395 PF13431 TPR_17: Tetratricopep 92.6 0.12 2.6E-06 34.6 2.7 32 430-461 2-33 (34)
396 PF10168 Nup88: Nuclear pore c 92.0 16 0.00034 43.3 20.7 98 51-183 85-184 (717)
397 PF14583 Pectate_lyase22: Olig 91.8 2.3 5E-05 45.6 12.4 217 57-312 42-275 (386)
398 PF12894 Apc4_WD40: Anaphase-p 91.7 0.47 1E-05 34.5 5.0 30 281-310 13-42 (47)
399 PF13432 TPR_16: Tetratricopep 91.7 0.34 7.3E-06 37.7 4.8 52 422-473 12-63 (65)
400 PHA03098 kelch-like protein; P 91.7 7.6 0.00016 44.6 17.9 63 61-127 294-368 (534)
401 PF05694 SBP56: 56kDa selenium 91.6 2.3 5E-05 46.0 12.2 129 54-183 184-347 (461)
402 KOG0547 Translocase of outer m 91.0 0.82 1.8E-05 49.6 8.0 92 376-469 474-565 (606)
403 PRK11189 lipoprotein NlpI; Pro 90.8 2.3 4.9E-05 44.8 11.4 100 366-475 67-166 (296)
404 PF13371 TPR_9: Tetratricopept 90.6 0.78 1.7E-05 36.5 6.1 53 423-475 11-63 (73)
405 COG3490 Uncharacterized protei 90.4 17 0.00037 37.1 16.0 61 57-122 120-186 (366)
406 PF00780 CNH: CNH domain; Int 90.3 17 0.00037 37.4 17.5 162 106-312 6-168 (275)
407 PRK13616 lipoprotein LpqB; Pro 90.3 22 0.00048 41.2 19.5 105 51-174 350-472 (591)
408 PF11635 Med16: Mediator compl 90.1 41 0.00089 40.4 22.3 236 65-304 65-345 (753)
409 PF14870 PSII_BNR: Photosynthe 90.0 28 0.0006 36.6 18.4 115 48-173 142-256 (302)
410 PF05694 SBP56: 56kDa selenium 89.9 19 0.0004 39.3 17.0 173 55-249 134-345 (461)
411 PHA02790 Kelch-like protein; P 89.9 18 0.0004 40.9 18.4 106 61-180 271-386 (480)
412 PF14559 TPR_19: Tetratricopep 89.9 0.65 1.4E-05 36.3 4.9 53 422-474 6-58 (68)
413 PF05096 Glu_cyclase_2: Glutam 89.6 26 0.00057 35.7 19.0 126 39-181 32-160 (264)
414 PHA02713 hypothetical protein; 89.6 5.8 0.00013 45.8 14.3 23 227-249 512-536 (557)
415 KOG3630 Nuclear pore complex, 89.2 4.4 9.5E-05 48.5 12.5 156 95-296 102-260 (1405)
416 PF10313 DUF2415: Uncharacteri 88.9 1.1 2.5E-05 31.6 4.8 33 148-180 1-35 (43)
417 TIGR02795 tol_pal_ybgF tol-pal 88.8 6 0.00013 34.4 11.0 103 367-476 6-111 (119)
418 cd00189 TPR Tetratricopeptide 88.7 4.7 0.0001 32.3 9.8 91 372-472 9-99 (100)
419 KOG4626 O-linked N-acetylgluco 88.6 2.3 5E-05 47.5 9.3 91 375-475 298-388 (966)
420 KOG1916 Nuclear protein, conta 88.1 0.43 9.3E-06 55.0 3.6 119 45-177 127-264 (1283)
421 KOG3630 Nuclear pore complex, 87.7 4.8 0.0001 48.2 11.5 116 52-179 102-229 (1405)
422 TIGR00990 3a0801s09 mitochondr 87.5 5.8 0.00013 46.5 12.8 87 380-475 381-467 (615)
423 PRK15363 pathogenicity island 87.1 10 0.00022 35.4 11.4 99 361-469 33-131 (157)
424 PF10214 Rrn6: RNA polymerase 86.7 52 0.0011 39.7 20.3 91 215-313 145-236 (765)
425 PF14655 RAB3GAP2_N: Rab3 GTPa 86.5 7.4 0.00016 42.7 11.8 58 36-94 293-350 (415)
426 KOG0550 Molecular chaperone (D 86.4 0.86 1.9E-05 48.4 4.4 91 365-465 51-141 (486)
427 TIGR03118 PEPCTERM_chp_1 conse 86.3 45 0.00098 34.6 23.5 230 52-314 24-284 (336)
428 KOG4460 Nuclear pore complex, 86.1 4.6 0.0001 44.2 9.7 98 215-314 103-203 (741)
429 PF10313 DUF2415: Uncharacteri 85.8 3.1 6.7E-05 29.4 5.5 32 51-82 1-35 (43)
430 PF15390 DUF4613: Domain of un 85.4 18 0.00039 40.7 13.8 157 51-246 20-186 (671)
431 PF03704 BTAD: Bacterial trans 85.3 4 8.6E-05 37.6 8.1 102 366-468 9-123 (146)
432 PF07569 Hira: TUP1-like enhan 85.1 2.5 5.4E-05 42.2 6.9 54 633-687 16-95 (219)
433 PF15390 DUF4613: Domain of un 85.0 11 0.00024 42.3 12.0 120 49-180 55-188 (671)
434 COG4235 Cytochrome c biogenesi 85.0 18 0.0004 37.2 13.0 124 359-492 152-275 (287)
435 PRK13616 lipoprotein LpqB; Pro 85.0 26 0.00057 40.6 16.0 117 53-177 399-524 (591)
436 COG3386 Gluconolactonase [Carb 84.9 11 0.00024 39.7 11.9 115 42-169 154-277 (307)
437 PRK10115 protease 2; Provision 84.7 94 0.002 36.9 22.8 72 52-127 128-209 (686)
438 PRK11189 lipoprotein NlpI; Pro 84.6 4 8.6E-05 42.9 8.6 90 382-476 44-133 (296)
439 PRK15179 Vi polysaccharide bio 84.6 10 0.00023 44.7 12.7 94 373-476 96-189 (694)
440 PF08728 CRT10: CRT10; InterP 84.6 23 0.0005 41.3 15.0 160 62-246 49-246 (717)
441 PF08728 CRT10: CRT10; InterP 84.2 13 0.00027 43.4 12.7 117 52-177 102-245 (717)
442 PF13414 TPR_11: TPR repeat; P 84.1 2 4.2E-05 33.7 4.7 65 365-438 5-69 (69)
443 PF07719 TPR_2: Tetratricopept 84.1 1.5 3.2E-05 28.7 3.4 32 442-473 2-33 (34)
444 KOG4626 O-linked N-acetylgluco 83.7 3.9 8.5E-05 45.8 8.0 99 380-487 268-366 (966)
445 COG1729 Uncharacterized protei 83.6 4.8 0.00011 40.8 8.1 96 366-475 144-249 (262)
446 PHA03098 kelch-like protein; P 83.5 28 0.00062 39.9 15.8 64 61-127 342-416 (534)
447 PRK15359 type III secretion sy 83.4 3.8 8.2E-05 37.9 6.9 66 409-477 29-94 (144)
448 KOG0624 dsRNA-activated protei 83.1 6.3 0.00014 41.1 8.7 111 357-477 32-142 (504)
449 TIGR03075 PQQ_enz_alc_DH PQQ-d 82.7 96 0.0021 35.5 23.1 136 31-183 38-194 (527)
450 PF14727 PHTB1_N: PTHB1 N-term 82.6 83 0.0018 34.7 18.7 159 61-248 36-206 (418)
451 PF13174 TPR_6: Tetratricopept 82.5 1.8 4E-05 28.0 3.3 31 443-473 2-32 (33)
452 KOG1308 Hsp70-interacting prot 82.4 1.4 3.1E-05 45.7 3.9 97 358-465 109-206 (377)
453 PF00780 CNH: CNH domain; Int 82.2 63 0.0014 33.1 21.9 160 60-250 5-169 (275)
454 PF14583 Pectate_lyase22: Olig 82.0 81 0.0017 34.2 21.7 113 55-179 85-223 (386)
455 PF07569 Hira: TUP1-like enhan 81.8 8.2 0.00018 38.5 9.0 65 58-125 18-95 (219)
456 COG5167 VID27 Protein involved 81.8 31 0.00066 38.1 13.5 133 31-180 491-634 (776)
457 PF10647 Gmad1: Lipoprotein Lp 81.2 68 0.0015 32.7 16.0 113 52-178 25-144 (253)
458 KOG2247 WD40 repeat-containing 80.2 0.36 7.8E-06 52.1 -1.3 142 53-239 37-181 (615)
459 PRK12370 invasion protein regu 80.1 6.6 0.00014 45.4 8.8 87 380-475 320-406 (553)
460 PRK10049 pgaA outer membrane p 80.0 12 0.00026 45.2 11.3 97 370-476 366-462 (765)
461 PF12895 Apc3: Anaphase-promot 79.9 3.6 7.7E-05 33.8 4.9 79 380-466 5-83 (84)
462 TIGR03606 non_repeat_PQQ dehyd 79.4 67 0.0014 35.8 15.8 59 46-104 25-89 (454)
463 TIGR03075 PQQ_enz_alc_DH PQQ-d 79.2 60 0.0013 37.2 16.1 65 63-127 121-191 (527)
464 TIGR02604 Piru_Ver_Nterm putat 78.7 81 0.0018 34.2 16.4 74 94-178 14-99 (367)
465 KOG4499 Ca2+-binding protein R 78.2 77 0.0017 31.6 15.2 48 285-332 217-264 (310)
466 PRK10803 tol-pal system protei 78.0 8.9 0.00019 39.5 8.1 96 367-476 146-252 (263)
467 PLN03098 LPA1 LOW PSII ACCUMUL 77.3 5.4 0.00012 43.6 6.4 62 406-470 77-141 (453)
468 TIGR02604 Piru_Ver_Nterm putat 77.3 48 0.001 36.0 14.1 109 51-168 14-143 (367)
469 PRK12370 invasion protein regu 77.2 18 0.00039 41.8 11.3 93 369-471 344-436 (553)
470 KOG2280 Vacuolar assembly/sort 77.0 1.5E+02 0.0033 34.6 17.7 51 71-126 63-113 (829)
471 COG3386 Gluconolactonase [Carb 76.9 1E+02 0.0023 32.4 17.8 167 53-252 68-248 (307)
472 PF14781 BBS2_N: Ciliary BBSom 76.8 58 0.0013 29.5 12.5 113 54-180 2-127 (136)
473 PRK09782 bacteriophage N4 rece 76.1 28 0.00062 42.9 12.9 88 380-476 625-712 (987)
474 TIGR03302 OM_YfiO outer membra 75.5 41 0.00089 33.5 12.3 109 361-476 31-150 (235)
475 KOG0624 dsRNA-activated protei 74.9 18 0.00039 37.9 9.0 121 362-488 268-388 (504)
476 PF05096 Glu_cyclase_2: Glutam 74.8 92 0.002 31.9 14.0 135 69-234 107-249 (264)
477 KOG1897 Damage-specific DNA bi 74.3 2.1E+02 0.0045 34.6 20.2 154 53-246 777-942 (1096)
478 PF00515 TPR_1: Tetratricopept 74.1 3.7 7.9E-05 27.0 2.8 32 442-473 2-33 (34)
479 COG3204 Uncharacterized protei 74.0 1.2E+02 0.0025 31.5 20.1 218 49-310 42-264 (316)
480 KOG1900 Nuclear pore complex, 73.7 61 0.0013 40.1 14.2 166 70-247 97-273 (1311)
481 PF13525 YfiO: Outer membrane 73.5 15 0.00033 36.0 8.2 76 364-480 6-81 (203)
482 PRK15174 Vi polysaccharide exp 73.2 32 0.00069 40.7 12.1 106 360-475 73-178 (656)
483 PHA02790 Kelch-like protein; P 72.7 98 0.0021 35.0 15.5 64 61-127 318-386 (480)
484 PF13428 TPR_14: Tetratricopep 72.6 7.3 0.00016 27.5 4.2 35 442-476 2-36 (44)
485 PF14655 RAB3GAP2_N: Rab3 GTPa 72.0 23 0.00049 39.0 9.6 92 55-157 6-118 (415)
486 PF12657 TFIIIC_delta: Transcr 71.2 23 0.00049 33.9 8.6 32 148-179 86-122 (173)
487 PF12768 Rax2: Cortical protei 71.0 45 0.00098 34.6 11.2 95 72-180 16-125 (281)
488 KOG1916 Nuclear protein, conta 71.0 4.9 0.00011 46.9 4.3 72 51-126 181-266 (1283)
489 PLN03088 SGT1, suppressor of 70.7 11 0.00025 40.6 7.1 54 422-475 17-70 (356)
490 cd00189 TPR Tetratricopeptide 70.7 28 0.00061 27.5 8.2 55 421-475 14-68 (100)
491 PRK09782 bacteriophage N4 rece 70.1 38 0.00082 41.9 12.0 88 380-477 592-679 (987)
492 KOG4499 Ca2+-binding protein R 69.7 1E+02 0.0022 30.8 12.3 126 50-182 108-245 (310)
493 TIGR02795 tol_pal_ybgF tol-pal 68.1 19 0.00042 31.0 7.0 54 422-475 17-73 (119)
494 PLN02153 epithiospecifier prot 68.0 1.7E+02 0.0038 31.1 18.7 64 61-127 32-111 (341)
495 PF12234 Rav1p_C: RAVE protein 67.8 22 0.00048 41.1 8.7 94 27-125 50-156 (631)
496 KOG2377 Uncharacterized conser 67.6 82 0.0018 34.5 12.1 113 53-177 25-139 (657)
497 CHL00033 ycf3 photosystem I as 67.5 52 0.0011 30.9 10.3 95 363-464 35-136 (168)
498 PF07995 GSDH: Glucose / Sorbo 67.0 35 0.00075 36.5 9.8 114 52-171 3-136 (331)
499 KOG4460 Nuclear pore complex, 66.8 1.8E+02 0.0039 32.5 14.7 97 147-251 103-203 (741)
500 TIGR02276 beta_rpt_yvtn 40-res 66.5 25 0.00054 24.1 5.9 24 289-312 1-25 (42)
No 1
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=9.9e-101 Score=786.00 Aligned_cols=719 Identities=36% Similarity=0.505 Sum_probs=583.5
Q ss_pred CCCCCCCCchHHHHHhhhccCcCcccccccccchhhhccccccEEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCC
Q 004477 1 MENFPFHDGSIYDMLDTRHTDTRPDVNHSLQMHSSLVRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYS 80 (751)
Q Consensus 1 ~~~~~~~~~~~~~~l~~r~~~~~~~~~~~l~~~~~~i~~~~~~~~L~gH~~~V~~l~~s~dg~~LaSgs~Dg~I~IWd~~ 80 (751)
|.+..|++++|..+|..|......-.++...+++.++.++.+.++|.||+||||||+|+.+|.+|||||+|..++|||+.
T Consensus 1 M~~vs~s~~~i~rql~~r~~~~~h~~rq~y~~~s~~lrrL~lE~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~ 80 (758)
T KOG1310|consen 1 MSGVSLSDGNILRQLDYRDAFQLHISRQIYMGNSTWLRRLDLEAELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPF 80 (758)
T ss_pred CCceeccchhHhhhccccccchhhhHHHHhccccHHHhhcchhhhhccccceecceeecCCCCEEeecCCcceEEeecch
Confidence 78888999999988888876555444432348899999999999999999999999999999999999999999999999
Q ss_pred CCeEEEEecccCCcceEEEEEecCCCCcEEEEEECCCcEEEEECCCCCCCCCCCCCCCCceeecccCCceeEEEEecCCC
Q 004477 81 SRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNP 160 (751)
Q Consensus 81 ~~~~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~Dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~ 160 (751)
..++++.+.+||.++|+|++|.|.+++.+++||+.|..|+|+|+....+...+.+..++...+.||..+|+.|+..|.++
T Consensus 81 ~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~P 160 (758)
T KOG1310|consen 81 EYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIKLFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGP 160 (758)
T ss_pred hcceeeeeecccccceeEEeeeccCCCeEEEeccCcceEEEEecccccccccccCccchhhhhhhhhhhhhheecCCCCC
Confidence 99999999999999999999999998899999999999999999987777777777788999999999999999999888
Q ss_pred CEEEEEeCCCcEEEEecCCCCCCCCCCCCCCccceEEEecccCceecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeE
Q 004477 161 HVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFA 240 (751)
Q Consensus 161 ~~l~s~s~Dg~I~iwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~I 240 (751)
+.||++++||+|+++|+|.+..|.+....+..+.++.- .....+|+.++|.++++|++|+.|..+
T Consensus 161 htfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~---------------~lielk~ltisp~rp~~laVGgsdpfa 225 (758)
T KOG1310|consen 161 HTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNP---------------QLIELKCLTISPSRPYYLAVGGSDPFA 225 (758)
T ss_pred ceEEEecCCcceeeecccCCccCCccccccHHHHHhch---------------hhheeeeeeecCCCCceEEecCCCchh
Confidence 99999999999999999999988766555544443332 235789999999999999999999999
Q ss_pred EEEeCC-CCCCccccCCCCC----CCCcccccccccc-ccCCc-ccc--ceEEEEEcCCCCEEEEEeCCCcEEEEECCCC
Q 004477 241 RLYDRR-MLPPLTSCQKRMS----PPPCVNYFCPMHL-SEHGR-SSL--HLTHVTFSPNGEEVLLSYSGEHVYLMDVNHA 311 (751)
Q Consensus 241 riwD~~-~~~~~~~~~~~~~----~~~~~~~~~~~~~-~~~g~-~~~--~vt~v~fspdg~~Ll~~s~d~~I~lwdl~~~ 311 (751)
|+||+| +.+....-..... +..|+++|+|+|+ ...|. ..+ -++.++|+|+|..|+++.+..+||+||++.+
T Consensus 226 rLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~hlkn~~gn~~~~~~~~t~vtfnpNGtElLvs~~gEhVYlfdvn~~ 305 (758)
T KOG1310|consen 226 RLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPGHLKNSQGNLDRYITCCTYVTFNPNGTELLVSWGGEHVYLFDVNED 305 (758)
T ss_pred hhhhhhhhccCCCCCccccCCCCcccchhheecCccccCcccccccceeeeEEEEECCCCcEEEEeeCCeEEEEEeecCC
Confidence 999954 4444443332222 3458999999999 33331 112 2688999999999999999999999999996
Q ss_pred Ccceeeeec------CCCceeEEeC----CCCCCcccCCC-cccccccccccccccccCcchhHHHHHHHHHhhhcCCCh
Q 004477 312 GGRAMRYTV------GDASKIMSFT----PTLNGLELQPP-IHDFLQTNIRVRGEVATGLGKCRMLVEIARNSLEEGKHP 380 (751)
Q Consensus 312 ~~~~~~~~~------~~~~~~~~~s----p~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~g~~~ 380 (751)
+.....+.. +.......|+ .....+..... ......++.+.. +.++..+++.+|.+...+.++.|++.
T Consensus 306 ~~~~~y~~~~~~~~~~~~~~~~lfT~~~~~sN~lh~~en~~~~~tP~sr~hrs-p~~a~~~~~~eL~e~ie~~~~egnd~ 384 (758)
T KOG1310|consen 306 KSPTPYFLPIEDSNKKPSKPSLLFTQPLKRSNYLHWYENNFGASTPASRVHRS-PYTAAQPRFYELPENIEKFKTEGNDG 384 (758)
T ss_pred CCceeecCcccccccCCCCcchhhccccccccccccccCCccccCCccccccC-cccccccchhhchHHHHHHHhhccch
Confidence 644433322 0111111122 11111111111 111222333333 34566677888888888888888755
Q ss_pred hHH------HHHhHHHHhcccCCCCCchhhhhHhHHHHHhhcccccchhhhHHHhhHHHhcCCCCCcchHHHHHHHHHHh
Q 004477 381 YYG------IEACNEVLEGHLSGIGPMLRHECLCIRAALLLKRKWKNDAQMAIRDCYNARRIDSSSFRAHLYMSEALEQL 454 (751)
Q Consensus 381 ~~a------i~~~~~~i~~~~~~~~~~~~~~~~~~ra~~~~~r~w~~d~y~al~d~~~a~~~~~~~~~a~~~~~~~l~~l 454 (751)
+++ |..|+.+++.. +..+.+|+|||+++|+|+|.||.|+|||||++|++++|.+.||||||++||.+|
T Consensus 385 ly~~~~~~~i~~~s~a~q~~------~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~s~~kah~~la~aL~el 458 (758)
T KOG1310|consen 385 LYESIVSGAISHYSRAIQYV------PDAIYLLENRAAALMKRKWRGDSYLALRDCHVALRLNPSIQKAHFRLARALNEL 458 (758)
T ss_pred hhhHHHHHHHHHHHHHhhhc------cchhHHHHhHHHHHHhhhccccHHHHHHhHHhhccCChHHHHHHHHHHHHHHHH
Confidence 444 44555555544 334679999999999999999999999999999999999999999999999999
Q ss_pred cchHHHHHHHHHhcccCCCChhhhHHHHHHHHHHHHHHhhhccCCCCCCCCCCCCCCccccccchhcccccCCCCCCCCC
Q 004477 455 CKYKEALDFAIAAQCLDPSNSVMAEKVENIKKHIAAAETEKNNKANDGGARSEPRTGRVLSLSDIIYRSEANSDASQDGP 534 (751)
Q Consensus 455 ~~~~~a~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 534 (751)
+++++|+.|..+++.+||........|.++.+++.++.++....... .-.|+.++++.++|.+..++..++-.
T Consensus 459 ~r~~eal~~~~alq~~~Ptd~a~~~~v~~l~rDi~aa~~~~~~e~~~-------~~~ri~t~~~~~~r~~~~~~~~~~~~ 531 (758)
T KOG1310|consen 459 TRYLEALSCHWALQMSFPTDVARQNFVLCLPRDISAALFSNPSEMIR-------AFARIDTDLSSVRRFFWIHKVLRGCL 531 (758)
T ss_pred hhHHHhhhhHHHHhhcCchhhhhhhhhhccccchHHHhccCchhhhh-------hhheeccchhhhhhhhhhhhhhhhhh
Confidence 99999999999999999977766778999999999998764333222 22378888889999999999999999
Q ss_pred CCCCCCCchhhhhhhcccCCCCCCCCCccccccccCccceeecccCCCccccccCCCCCCCC-CCCCCCCCCCCCccccc
Q 004477 535 RSEREDSDYDEEVEVDFHTSVPGDEGRDVEANFLHGSLNVRIHRRGDSARETVDANGSSGSP-SSSSQNDRIPYQPETVI 613 (751)
Q Consensus 535 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 613 (751)
+++++|++.|.|.+++..++..+++.+..++|.+.++|.++++...++..-. ..+...... .++..++...|.++.+.
T Consensus 532 ~l~s~d~~~e~e~p~d~qts~vds~~R~dd~n~~~~~l~~~v~~~~~~~~~~-~~~~~~~~~~~ssl~nDe~dyq~E~sy 610 (758)
T KOG1310|consen 532 LLISSDIYWEQEQPWDSQTSDVDSSQRLDDENGFLTLLEPPVNYENEVESSS-GENIVSMYTGHSSLNNDEDDYQDEESY 610 (758)
T ss_pred hhhcccccccccCCCCCCceeccccccccccccccccccCcccccccccccc-ccccccccccccccccchhhcccchhh
Confidence 9999999999999999999999999999999999999999999987752111 111111111 22335666678889999
Q ss_pred cccceeecccccceeeeEeeeccCCCCEEEEccCCCcEEEEecCC------------eeeeeeccCCCceEEEEecCCce
Q 004477 614 DMKQRYVGHCNVGTDIKQASFLGQRGDYIASGSDDGRWFIWEKQT------------VVNCVQCHPFDCVVATSGIDNTI 681 (751)
Q Consensus 614 ~~~~~~~gh~~~~~~i~~~~~~~~~~~~v~sgs~dg~~~iW~~~~------------~v~~v~~~p~~~~las~~~d~~v 681 (751)
+|.++|.||||..||||+++|+|.+|+||+|||+||++|||++.+ +|||++.||..++|||+|+|.||
T Consensus 611 dy~~rYvGHCNv~TDIKeanFlGqrgeyiasgSddgr~fiwek~tg~i~av~~gdssivnciqghP~~~~latSgiDsti 690 (758)
T KOG1310|consen 611 DYASRYVGHCNVTTDIKEANFLGQRGEYIASGSDDGRFFIWEKLTGSILAVIHGDSSIVNCIQGHPRCPTLATSGIDSTI 690 (758)
T ss_pred hHHhhhccccccccccccccccccCCCeeeEecCCCceEEeecCCcceEEEeeCchhheeeccCCCCCceeeeccCccce
Confidence 999999999999999999999999999999999999999999988 89999999999999999999999
Q ss_pred EEecCCCCCCCccCCCCCCCChhhHHHHHHHHHHHHhccccccccHHHHHHhhhcccccCCcCCccccCC
Q 004477 682 KIWTPSASVPSIVSGGAAGPDTADVLEAMESNQRKLSRNREHSLSYELLERFHMHEFSEGSLRPFECAQS 751 (751)
Q Consensus 682 ~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 751 (751)
|||+|.. .+....++..+|....+.+.++.|+++..+++...+..+.|.+||+| |.+|..|||+|+|+
T Consensus 691 KIwsp~a-~p~~~as~~h~pns~~iv~~~e~n~Q~~sR~~~~~l~~~~~~~fr~~-~~~g~~h~~~~t~~ 758 (758)
T KOG1310|consen 691 KIWSPEA-TPPSGASRNHRPNSYAIVATNEMNRQQGSRDSYITLRMLSHLAFRAH-LDDGFGHEVLDTDA 758 (758)
T ss_pred EEecccC-CCCcccccccCCchhhhhhhhhhhhhhhccCCcchHHHHHHHHHHHh-hcccCCcccccCCC
Confidence 9999998 44444556677877777788888888877666666777788899999 99999999999985
No 2
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=2e-47 Score=389.78 Aligned_cols=264 Identities=31% Similarity=0.505 Sum_probs=222.0
Q ss_pred chHHHHHhhhccCcCcccccccccchhhhccccccEEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEe
Q 004477 9 GSIYDMLDTRHTDTRPDVNHSLQMHSSLVRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSI 88 (751)
Q Consensus 9 ~~~~~~l~~r~~~~~~~~~~~l~~~~~~i~~~~~~~~L~gH~~~V~~l~~s~dg~~LaSgs~Dg~I~IWd~~~~~~~~~l 88 (751)
.+...-|.+|+++++..|.+.+.....+++++.+.+.|.+|.|||+.|.|+..|..|+|||+|..|.+||...+.....+
T Consensus 101 w~~~~~l~~Re~gss~~f~~~~~~s~~~vqr~~l~~kL~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f 180 (559)
T KOG1334|consen 101 WQSGTALHQRELGSSSRFVYEACGSRLFVQRLRLQKKLNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSF 180 (559)
T ss_pred cchhhHHHhhhcCchhHHHHHhhhhHHHHHHhhhhhcccCCCCccceeeecccCceeeccCccceEEeehhhccCccccc
Confidence 44456688899999888999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCcceEEEEEecCCCCcEEEEEECCCcEEEEECCCCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeC
Q 004477 89 ETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASE 168 (751)
Q Consensus 89 ~~~h~~~V~~v~fsp~s~~~~l~sgs~Dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~ 168 (751)
..||..+|+..+|.|.++++.|++++.||.|++=.+... +.+ +....+..|.++|..++..|+.++.|.|+++
T Consensus 181 ~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~s~i~~t-~~~------e~t~rl~~h~g~vhklav~p~sp~~f~S~ge 253 (559)
T KOG1334|consen 181 ESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVRVSEILET-GYV------ENTKRLAPHEGPVHKLAVEPDSPKPFLSCGE 253 (559)
T ss_pred ccccccchhhhhccCCCCCcCceeccccCceeeeeeccc-cce------ecceecccccCccceeeecCCCCCccccccc
Confidence 899999999999999998899999999999999877642 211 3355677899999999999999999999999
Q ss_pred CCcEEEEecCCCCCCCCCCCCCCccceEEEecccCceecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCC
Q 004477 169 DGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRML 248 (751)
Q Consensus 169 Dg~I~iwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~ 248 (751)
|+.+.-+|+|+...... +. .+. ...........++.+|...+++++|+.|..+|+||.|..
T Consensus 254 D~~v~~~Dlr~~~pa~~-----------~~-cr~-------~~~~~~v~L~~Ia~~P~nt~~faVgG~dqf~RvYD~R~~ 314 (559)
T KOG1334|consen 254 DAVVFHIDLRQDVPAEK-----------FV-CRE-------ADEKERVGLYTIAVDPRNTNEFAVGGSDQFARVYDQRRI 314 (559)
T ss_pred ccceeeeeeccCCccce-----------ee-eec-------cCCccceeeeeEecCCCCccccccCChhhhhhhhcccch
Confidence 99999999998764311 11 000 001123568899999998889999999999999999976
Q ss_pred CCccccCCCCCCCCccccccccccccCCccccceEEEEEcCCCCEEEEEeCCCcEEEEE
Q 004477 249 PPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMD 307 (751)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~vt~v~fspdg~~Ll~~s~d~~I~lwd 307 (751)
..- .....+..|+|.|+....+. .|++++|+.++..|+++..|..||||.
T Consensus 315 ~~e-------~~n~~~~~f~p~hl~~d~~v--~ITgl~Ysh~~sElLaSYnDe~IYLF~ 364 (559)
T KOG1334|consen 315 DKE-------ENNGVLDKFCPHHLVEDDPV--NITGLVYSHDGSELLASYNDEDIYLFN 364 (559)
T ss_pred hhc-------cccchhhhcCCccccccCcc--cceeEEecCCccceeeeecccceEEec
Confidence 532 12235788999999874443 499999999999999999999999993
No 3
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=3.7e-44 Score=355.42 Aligned_cols=234 Identities=20% Similarity=0.311 Sum_probs=191.0
Q ss_pred cccEEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEecccCCcceEEEEEecCCCCcEEEEEECCCcEE
Q 004477 41 SQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVR 120 (751)
Q Consensus 41 ~~~~~L~gH~~~V~~l~~s~dg~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~Dg~V~ 120 (751)
.+...+.||.+.|.|++|+|+|..||||+.|.++++||+.+..+..+. ++|...|.||+|+|+ |+.||||+.||+|+
T Consensus 106 rCssS~~GH~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~TeTp~~t~-KgH~~WVlcvawsPD--gk~iASG~~dg~I~ 182 (480)
T KOG0271|consen 106 RCSSSIAGHGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTETPLFTC-KGHKNWVLCVAWSPD--GKKIASGSKDGSIR 182 (480)
T ss_pred eeccccCCCCCcEEEEEecCCCceEEecCCCceEEeeccCCCCcceee-cCCccEEEEEEECCC--cchhhccccCCeEE
Confidence 355678999999999999999999999999999999999999999999 899999999999999 89999999999999
Q ss_pred EEECCCCCCCCCCCCCCCCceeecccCCceeEEEEecC----CCCEEEEEeCCCcEEEEecCCCCCCCCCCCCCCccceE
Q 004477 121 LFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVG----NPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNI 196 (751)
Q Consensus 121 vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~----~~~~l~s~s~Dg~I~iwDlr~~~~~~~~~~~~~~~~~~ 196 (751)
+||..+++ .....+.+|+..|++++|.|- ...+|++++.||+|+|||+..+..
T Consensus 183 lwdpktg~---------~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~-------------- 239 (480)
T KOG0271|consen 183 LWDPKTGQ---------QIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTC-------------- 239 (480)
T ss_pred EecCCCCC---------cccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCceE--------------
Confidence 99999764 336789999999999999862 346899999999999999987652
Q ss_pred EEecccCceecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCccccCCCCCCCCccccccccccccCC
Q 004477 197 LLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHG 276 (751)
Q Consensus 197 l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 276 (751)
+....+|..+|+|+.|-. ..+|++|+.|++|++|+...+.....+ .|
T Consensus 240 -----------~~~lsgHT~~VTCvrwGG--~gliySgS~DrtIkvw~a~dG~~~r~l--------------------kG 286 (480)
T KOG0271|consen 240 -----------VRTLSGHTASVTCVRWGG--EGLIYSGSQDRTIKVWRALDGKLCREL--------------------KG 286 (480)
T ss_pred -----------EEEeccCccceEEEEEcC--CceEEecCCCceEEEEEccchhHHHhh--------------------cc
Confidence 223345889999999985 369999999999999999876543332 33
Q ss_pred ccccceEEEEEc-----------CCCC-------------------------EEEEEeCCCcEEEEECCCCC-cceeeee
Q 004477 277 RSSLHLTHVTFS-----------PNGE-------------------------EVLLSYSGEHVYLMDVNHAG-GRAMRYT 319 (751)
Q Consensus 277 ~~~~~vt~v~fs-----------pdg~-------------------------~Ll~~s~d~~I~lwdl~~~~-~~~~~~~ 319 (751)
|.. +|+.++.+ |.|+ .|++|+.|.++++|+-...+ ......+
T Consensus 287 Hah-wvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~kkpi~rmtg 365 (480)
T KOG0271|consen 287 HAH-WVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSKKPITRMTG 365 (480)
T ss_pred cch-heeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEecCCceEEEecccccccchhhhhc
Confidence 433 46666555 3344 49999999999999977654 3334556
Q ss_pred cCCCceeEEeCCCCC
Q 004477 320 VGDASKIMSFTPTLN 334 (751)
Q Consensus 320 ~~~~~~~~~~sp~~~ 334 (751)
|...++.+.|+|+..
T Consensus 366 Hq~lVn~V~fSPd~r 380 (480)
T KOG0271|consen 366 HQALVNHVSFSPDGR 380 (480)
T ss_pred hhhheeeEEECCCcc
Confidence 666777777777643
No 4
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=5.7e-42 Score=342.75 Aligned_cols=208 Identities=19% Similarity=0.221 Sum_probs=168.3
Q ss_pred cccEEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCC---eEEEEecccCCcceEEEEEecCCCCcEEEEEECCC
Q 004477 41 SQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSR---KLLHSIETGHSANVFCTKFVPETSDELVVSGAGDA 117 (751)
Q Consensus 41 ~~~~~L~gH~~~V~~l~~s~dg~~LaSgs~Dg~I~IWd~~~~---~~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~Dg 117 (751)
+..++|..|+++|+-+.||++|++||||+.|.+..||.+... +..+++ .+|..+|..+.|+|+ +++|++|+.|.
T Consensus 215 qt~qil~~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tl-vgh~~~V~yi~wSPD--dryLlaCg~~e 291 (519)
T KOG0293|consen 215 QTWQILQDHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVHFKLKKTL-VGHSQPVSYIMWSPD--DRYLLACGFDE 291 (519)
T ss_pred hhhhhHhhCCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCcceeeeeee-ecccCceEEEEECCC--CCeEEecCchH
Confidence 446788999999999999999999999999999999987533 345666 799999999999999 89999999999
Q ss_pred cEEEEECCCCCCCCCCCCCCCCceee-cccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCCCCCCCCCCccceE
Q 004477 118 EVRLFNLSRFSGRGLDDNAITPSALY-QCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNI 196 (751)
Q Consensus 118 ~V~vwd~~~~~~~~~~~~~~~~~~~~-~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~~~~~~~~~~~~ 196 (751)
.+.+||+.++. +...+ .+|...+.+++|.| ++..|++|+.|++|..||+.....-
T Consensus 292 ~~~lwDv~tgd----------~~~~y~~~~~~S~~sc~W~p-Dg~~~V~Gs~dr~i~~wdlDgn~~~------------- 347 (519)
T KOG0293|consen 292 VLSLWDVDTGD----------LRHLYPSGLGFSVSSCAWCP-DGFRFVTGSPDRTIIMWDLDGNILG------------- 347 (519)
T ss_pred heeeccCCcch----------hhhhcccCcCCCcceeEEcc-CCceeEecCCCCcEEEecCCcchhh-------------
Confidence 99999999763 23333 23568999999999 6788999999999999999875411
Q ss_pred EEecccCceecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCccccCCCCCCCCccccccccccccCC
Q 004477 197 LLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHG 276 (751)
Q Consensus 197 l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 276 (751)
-|. ......|.++++++ |+.++++.+.|..|++|++.........
T Consensus 348 ~W~------------gvr~~~v~dlait~-Dgk~vl~v~~d~~i~l~~~e~~~dr~li---------------------- 392 (519)
T KOG0293|consen 348 NWE------------GVRDPKVHDLAITY-DGKYVLLVTVDKKIRLYNREARVDRGLI---------------------- 392 (519)
T ss_pred ccc------------ccccceeEEEEEcC-CCcEEEEEecccceeeechhhhhhhccc----------------------
Confidence 010 00224689999999 4788888899999999998765322111
Q ss_pred ccccceEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 004477 277 RSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNH 310 (751)
Q Consensus 277 ~~~~~vt~v~fspdg~~Ll~~s~d~~I~lwdl~~ 310 (751)
....+|+++..|.||++++++-.+..|++||+..
T Consensus 393 se~~~its~~iS~d~k~~LvnL~~qei~LWDl~e 426 (519)
T KOG0293|consen 393 SEEQPITSFSISKDGKLALVNLQDQEIHLWDLEE 426 (519)
T ss_pred cccCceeEEEEcCCCcEEEEEcccCeeEEeecch
Confidence 0112599999999999999999999999999765
No 5
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=1.5e-40 Score=334.28 Aligned_cols=215 Identities=25% Similarity=0.334 Sum_probs=188.5
Q ss_pred hccccccEEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEecccCCcceEEEEEecCCCCcEEEEEECC
Q 004477 37 VRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGD 116 (751)
Q Consensus 37 i~~~~~~~~L~gH~~~V~~l~~s~dg~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~D 116 (751)
.+.+.+...--|-+.+|..+.|+.+++.|||||.+|.++||+..+...+.+| .||+..|.++.|+|..++..++||+.|
T Consensus 162 ~~~~~l~~SQ~gd~rPis~~~fS~ds~~laT~swsG~~kvW~~~~~~~~~~l-~gH~~~v~~~~fhP~~~~~~lat~s~D 240 (459)
T KOG0272|consen 162 LQSLELVCSQVGDTRPISGCSFSRDSKHLATGSWSGLVKVWSVPQCNLLQTL-RGHTSRVGAAVFHPVDSDLNLATASAD 240 (459)
T ss_pred hhhhhhhhhhccCCCcceeeEeecCCCeEEEeecCCceeEeecCCcceeEEE-eccccceeeEEEccCCCccceeeeccC
Confidence 3444444444577899999999999999999999999999999999888888 899999999999999446799999999
Q ss_pred CcEEEEECCCCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCCCCCCCCCCccceE
Q 004477 117 AEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNI 196 (751)
Q Consensus 117 g~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~~~~~~~~~~~~ 196 (751)
|+|++|++... .++..+.+|..+|..++|+| +|++|+|++.|.+-++||++++...
T Consensus 241 gtvklw~~~~e----------~~l~~l~gH~~RVs~VafHP-sG~~L~TasfD~tWRlWD~~tk~El------------- 296 (459)
T KOG0272|consen 241 GTVKLWKLSQE----------TPLQDLEGHLARVSRVAFHP-SGKFLGTASFDSTWRLWDLETKSEL------------- 296 (459)
T ss_pred CceeeeccCCC----------cchhhhhcchhhheeeeecC-CCceeeecccccchhhcccccchhh-------------
Confidence 99999999864 67899999999999999999 7899999999999999999998643
Q ss_pred EEecccCceecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCccccCCCCCCCCccccccccccccCC
Q 004477 197 LLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHG 276 (751)
Q Consensus 197 l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 276 (751)
....+|...|.+|+|+| +|.++++|+.|..-||||+|++..+. ++ .|
T Consensus 297 ------------L~QEGHs~~v~~iaf~~-DGSL~~tGGlD~~~RvWDlRtgr~im-------------~L-------~g 343 (459)
T KOG0272|consen 297 ------------LLQEGHSKGVFSIAFQP-DGSLAATGGLDSLGRVWDLRTGRCIM-------------FL-------AG 343 (459)
T ss_pred ------------HhhcccccccceeEecC-CCceeeccCccchhheeecccCcEEE-------------Ee-------cc
Confidence 22345888999999999 58999999999999999999986433 33 34
Q ss_pred ccccceEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 004477 277 RSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNH 310 (751)
Q Consensus 277 ~~~~~vt~v~fspdg~~Ll~~s~d~~I~lwdl~~ 310 (751)
|.. .|.+|+|+|+|..|++|+.|++++|||++.
T Consensus 344 H~k-~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~ 376 (459)
T KOG0272|consen 344 HIK-EILSVAFSPNGYHLATGSSDNTCKVWDLRM 376 (459)
T ss_pred ccc-ceeeEeECCCceEEeecCCCCcEEEeeecc
Confidence 544 599999999999999999999999999987
No 6
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.8e-37 Score=307.94 Aligned_cols=189 Identities=19% Similarity=0.225 Sum_probs=161.2
Q ss_pred EEEEecccCCcceEEEEEecCCCCcEEEEEECCCcEEEEECCCCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEE
Q 004477 84 LLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVV 163 (751)
Q Consensus 84 ~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~Dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l 163 (751)
+...+ .||.++|.|++|+|+ +..|+||+.|.++|+||+.+. .|..++++|...|.+++|+| ++..|
T Consensus 107 CssS~-~GH~e~Vl~~~fsp~--g~~l~tGsGD~TvR~WD~~Te----------Tp~~t~KgH~~WVlcvawsP-Dgk~i 172 (480)
T KOG0271|consen 107 CSSSI-AGHGEAVLSVQFSPT--GSRLVTGSGDTTVRLWDLDTE----------TPLFTCKGHKNWVLCVAWSP-DGKKI 172 (480)
T ss_pred ecccc-CCCCCcEEEEEecCC--CceEEecCCCceEEeeccCCC----------CcceeecCCccEEEEEEECC-Ccchh
Confidence 44455 799999999999998 899999999999999999975 67899999999999999999 77999
Q ss_pred EEEeCCCcEEEEecCCCCCCCCCCCCCCccceEEEecccCceecccCCCCCccceEEEEEeCC----CCcEEEEEeCCCe
Q 004477 164 WSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISST----RPHLLLVGGSDAF 239 (751)
Q Consensus 164 ~s~s~Dg~I~iwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~----~~~~l~sgs~D~~ 239 (751)
+||+.||+|++||..+++.. ....++|..+|++++|.|- ..++|++++.||.
T Consensus 173 ASG~~dg~I~lwdpktg~~~------------------------g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~ 228 (480)
T KOG0271|consen 173 ASGSKDGSIRLWDPKTGQQI------------------------GRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGS 228 (480)
T ss_pred hccccCCeEEEecCCCCCcc------------------------cccccCcccceeEEeecccccCCCccceecccCCCC
Confidence 99999999999999998754 2334568899999999874 3569999999999
Q ss_pred EEEEeCCCCCCccccCCCCCCCCccccccccccccCCccccceEEEEEcCCCCEEEEEeCCCcEEEEECCCCCcceeeee
Q 004477 240 ARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYT 319 (751)
Q Consensus 240 IriwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~vt~v~fspdg~~Ll~~s~d~~I~lwdl~~~~~~~~~~~ 319 (751)
|+|||+..+..+ ... .||.. +||||.|--+| +|++|+.|++|++|+...+.....+.+
T Consensus 229 vrIWd~~~~~~~-------------~~l-------sgHT~-~VTCvrwGG~g-liySgS~DrtIkvw~a~dG~~~r~lkG 286 (480)
T KOG0271|consen 229 VRIWDTKLGTCV-------------RTL-------SGHTA-SVTCVRWGGEG-LIYSGSQDRTIKVWRALDGKLCRELKG 286 (480)
T ss_pred EEEEEccCceEE-------------EEe-------ccCcc-ceEEEEEcCCc-eEEecCCCceEEEEEccchhHHHhhcc
Confidence 999999865432 222 56766 69999998776 689999999999999999887778888
Q ss_pred cCCCceeEEeCCC
Q 004477 320 VGDASKIMSFTPT 332 (751)
Q Consensus 320 ~~~~~~~~~~sp~ 332 (751)
|++-++.++.+.+
T Consensus 287 HahwvN~lalsTd 299 (480)
T KOG0271|consen 287 HAHWVNHLALSTD 299 (480)
T ss_pred cchheeeeeccch
Confidence 8888888887754
No 7
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=100.00 E-value=8.2e-38 Score=319.77 Aligned_cols=244 Identities=18% Similarity=0.292 Sum_probs=191.4
Q ss_pred CCCchHHHHHhhhccCcCcccccccccchhhhccccccEEeccCCCcEEEEEECC-CCCEEEEEeCCCcEEEEeCCC-Ce
Q 004477 6 FHDGSIYDMLDTRHTDTRPDVNHSLQMHSSLVRRLSQERELEGHQGCVNAISWNS-KGSLLISGSDDTHINVWSYSS-RK 83 (751)
Q Consensus 6 ~~~~~~~~~l~~r~~~~~~~~~~~l~~~~~~i~~~~~~~~L~gH~~~V~~l~~s~-dg~~LaSgs~Dg~I~IWd~~~-~~ 83 (751)
++.-...++..+-++..+.++.-.++ ...+.-.-+.++++.||+..|+++.|.| .+.+|+||+.|+.|+||++.. +.
T Consensus 171 ~h~k~~~dyq~r~~l~~P~dv~vnlR-~~rc~~Pkk~~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~ 249 (503)
T KOG0282|consen 171 LHGKSLFDYQGRSYLQKPKDVGVNLR-EERCYLPKKLSHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRR 249 (503)
T ss_pred ccccchhhccccccccCCcccCCccc-cceeeccHhheeeccCCccccchhhhccceeeEEEecCCCceEEEEEEecCcc
Confidence 44444444444444444444433333 2222333467899999999999999999 899999999999999999876 88
Q ss_pred EEEEecccCCcceEEEEEecCCCCcEEEEEECCCcEEEEECCCCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEE
Q 004477 84 LLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVV 163 (751)
Q Consensus 84 ~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~Dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l 163 (751)
++.++ .+|..+|.+++|+++ |..|+|+|.|++|++||++++ +++..+. -...++++.|.|++.++|
T Consensus 250 ~lrtf-~gH~k~Vrd~~~s~~--g~~fLS~sfD~~lKlwDtETG----------~~~~~f~-~~~~~~cvkf~pd~~n~f 315 (503)
T KOG0282|consen 250 CLRTF-KGHRKPVRDASFNNC--GTSFLSASFDRFLKLWDTETG----------QVLSRFH-LDKVPTCVKFHPDNQNIF 315 (503)
T ss_pred eehhh-hcchhhhhhhhcccc--CCeeeeeecceeeeeeccccc----------eEEEEEe-cCCCceeeecCCCCCcEE
Confidence 99998 899999999999999 899999999999999999976 3344443 244578999999888999
Q ss_pred EEEeCCCcEEEEecCCCCCCCCCCCCCCccceEEEecccCceecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEE
Q 004477 164 WSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLY 243 (751)
Q Consensus 164 ~s~s~Dg~I~iwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~Iriw 243 (751)
++|+.|+.|+.||+|+++. +.....|...|..+.|-+ ++.++++.+.|+.|+||
T Consensus 316 l~G~sd~ki~~wDiRs~kv-------------------------vqeYd~hLg~i~~i~F~~-~g~rFissSDdks~riW 369 (503)
T KOG0282|consen 316 LVGGSDKKIRQWDIRSGKV-------------------------VQEYDRHLGAILDITFVD-EGRRFISSSDDKSVRIW 369 (503)
T ss_pred EEecCCCcEEEEeccchHH-------------------------HHHHHhhhhheeeeEEcc-CCceEeeeccCccEEEE
Confidence 9999999999999999873 223334677899999999 58999999999999999
Q ss_pred eCCCCCCccccCCCCCCCCccccccccccccCCccccceEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 004477 244 DRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNH 310 (751)
Q Consensus 244 D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~vt~v~fspdg~~Ll~~s~d~~I~lwdl~~ 310 (751)
+.+...++..... .......+++.+|+++++++-+.|+.|.+|.+..
T Consensus 370 e~~~~v~ik~i~~--------------------~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~ 416 (503)
T KOG0282|consen 370 ENRIPVPIKNIAD--------------------PEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVP 416 (503)
T ss_pred EcCCCccchhhcc--------------------hhhccCcceecCCCCCeehhhccCceEEEEeccc
Confidence 9987654432210 1111367899999999999999999999997544
No 8
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=100.00 E-value=1.1e-36 Score=294.58 Aligned_cols=209 Identities=24% Similarity=0.329 Sum_probs=180.2
Q ss_pred cccEEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCC-eEEEEecccCCcceEEEEEecCCCCcEEEEEECCCcE
Q 004477 41 SQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSR-KLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEV 119 (751)
Q Consensus 41 ~~~~~L~gH~~~V~~l~~s~dg~~LaSgs~Dg~I~IWd~~~~-~~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~Dg~V 119 (751)
.++..|.||++.|+++.|+|+|.+||||+.|..|.+|++... +-...+ ++|+++|..+.|.++ ++.|++++.|.+|
T Consensus 38 ap~m~l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdceN~~~l-kgHsgAVM~l~~~~d--~s~i~S~gtDk~v 114 (338)
T KOG0265|consen 38 APIMLLPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDCENFWVL-KGHSGAVMELHGMRD--GSHILSCGTDKTV 114 (338)
T ss_pred chhhhcCCCcceEEEEEECCCCCeEeecCCcceEEEEeccccccceeee-ccccceeEeeeeccC--CCEEEEecCCceE
Confidence 456678999999999999999999999999999999996543 344455 799999999999999 7999999999999
Q ss_pred EEEECCCCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCCCCCCCCCCccceEEEe
Q 004477 120 RLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLD 199 (751)
Q Consensus 120 ~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~~~~~~~~~~~~l~~ 199 (751)
+.||++++ +.++.+++|+.-|+++.-+-.++.++.|++.||++++||+|+......
T Consensus 115 ~~wD~~tG----------~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t-------------- 170 (338)
T KOG0265|consen 115 RGWDAETG----------KRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKT-------------- 170 (338)
T ss_pred EEEecccc----------eeeehhccccceeeecCccccCCeEEEecCCCceEEEEeecccchhhc--------------
Confidence 99999976 568899999999999986666778999999999999999998653311
Q ss_pred cccCceecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCccccCCCCCCCCccccccccccccCCccc
Q 004477 200 LRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSS 279 (751)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 279 (751)
...+..++++.|+.. +..+.+|+-|+.|++||+|....+..+ .||..
T Consensus 171 ------------~~~kyqltAv~f~d~-s~qv~sggIdn~ikvWd~r~~d~~~~l--------------------sGh~D 217 (338)
T KOG0265|consen 171 ------------FENKYQLTAVGFKDT-SDQVISGGIDNDIKVWDLRKNDGLYTL--------------------SGHAD 217 (338)
T ss_pred ------------cccceeEEEEEeccc-ccceeeccccCceeeeccccCcceEEe--------------------ecccC
Confidence 113568999999984 789999999999999999976543332 56766
Q ss_pred cceEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 004477 280 LHLTHVTFSPNGEEVLLSYSGEHVYLMDVNH 310 (751)
Q Consensus 280 ~~vt~v~fspdg~~Ll~~s~d~~I~lwdl~~ 310 (751)
.|+.+..+|+|.++++.+.|.++++||++-
T Consensus 218 -tIt~lsls~~gs~llsnsMd~tvrvwd~rp 247 (338)
T KOG0265|consen 218 -TITGLSLSRYGSFLLSNSMDNTVRVWDVRP 247 (338)
T ss_pred -ceeeEEeccCCCccccccccceEEEEEecc
Confidence 699999999999999999999999999876
No 9
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=4.2e-36 Score=289.27 Aligned_cols=217 Identities=24% Similarity=0.362 Sum_probs=188.8
Q ss_pred ccccEEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEecccCCcceEEEEEecCCCCcEEEEEECCCcE
Q 004477 40 LSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEV 119 (751)
Q Consensus 40 ~~~~~~L~gH~~~V~~l~~s~dg~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~Dg~V 119 (751)
++..++|+||.+.|+++.|++|+++|+|+|.||.++|||..+..+++.+ +--...|..++|+|. ++++|.|+.|+..
T Consensus 45 ~~~rr~LkGH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~hai-pl~s~WVMtCA~sPS--g~~VAcGGLdN~C 121 (343)
T KOG0286|consen 45 MRTRRTLKGHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKVHAI-PLPSSWVMTCAYSPS--GNFVACGGLDNKC 121 (343)
T ss_pred eeeEEEecccccceeeeEecCCcCeEEeeccCCeEEEEEcccccceeEE-ecCceeEEEEEECCC--CCeEEecCcCcee
Confidence 4556899999999999999999999999999999999999998888888 667889999999999 8999999999999
Q ss_pred EEEECCCCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCCCCCCCCCCccceEEEe
Q 004477 120 RLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLD 199 (751)
Q Consensus 120 ~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~~~~~~~~~~~~l~~ 199 (751)
.||++....... .....+.+.+|++.+.++.|-+ + ..|+|+|.|.++.+||+++++.+
T Consensus 122 siy~ls~~d~~g----~~~v~r~l~gHtgylScC~f~d-D-~~ilT~SGD~TCalWDie~g~~~---------------- 179 (343)
T KOG0286|consen 122 SIYPLSTRDAEG----NVRVSRELAGHTGYLSCCRFLD-D-NHILTGSGDMTCALWDIETGQQT---------------- 179 (343)
T ss_pred EEEecccccccc----cceeeeeecCccceeEEEEEcC-C-CceEecCCCceEEEEEcccceEE----------------
Confidence 999998652221 1244567899999999999987 5 45669999999999999998732
Q ss_pred cccCceecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCccccCCCCCCCCccccccccccccCCccc
Q 004477 200 LRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSS 279 (751)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 279 (751)
..+.+|...|.+++++|.+++.+++|+-|+..+|||+|... |++.| .||..
T Consensus 180 ---------~~f~GH~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~~~-------------c~qtF-------~ghes 230 (343)
T KOG0286|consen 180 ---------QVFHGHTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRSGQ-------------CVQTF-------EGHES 230 (343)
T ss_pred ---------EEecCCcccEEEEecCCCCCCeEEecccccceeeeeccCcc-------------eeEee-------ccccc
Confidence 33446889999999999889999999999999999999864 66666 56665
Q ss_pred cceEEEEEcCCCCEEEEEeCCCcEEEEECCCC
Q 004477 280 LHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHA 311 (751)
Q Consensus 280 ~~vt~v~fspdg~~Ll~~s~d~~I~lwdl~~~ 311 (751)
-|++|.|.|+|.-+++|+.|++.++||++..
T Consensus 231 -DINsv~ffP~G~afatGSDD~tcRlyDlRaD 261 (343)
T KOG0286|consen 231 -DINSVRFFPSGDAFATGSDDATCRLYDLRAD 261 (343)
T ss_pred -ccceEEEccCCCeeeecCCCceeEEEeecCC
Confidence 4999999999999999999999999999884
No 10
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=100.00 E-value=1e-36 Score=323.08 Aligned_cols=536 Identities=15% Similarity=0.105 Sum_probs=366.4
Q ss_pred ccccccchhhhccccccEEeccCCCcEEEEEECCCCC---EEEEEeCCCcEEEEeCCCC--eEEEEecccCCcceEEEEE
Q 004477 27 NHSLQMHSSLVRRLSQERELEGHQGCVNAISWNSKGS---LLISGSDDTHINVWSYSSR--KLLHSIETGHSANVFCTKF 101 (751)
Q Consensus 27 ~~~l~~~~~~i~~~~~~~~L~gH~~~V~~l~~s~dg~---~LaSgs~Dg~I~IWd~~~~--~~~~~l~~~h~~~V~~v~f 101 (751)
.+.+.+++..-. ....+|.||.+.|+|+.|-|+.+ +|+||+.|++|++|.+... .++.++ .+|...+.|+.-
T Consensus 33 ~~~Iav~dp~k~--~i~t~l~GH~a~VnC~~~l~~s~~~a~~vsG~sD~~v~lW~l~~~~~~~i~~~-~g~~~~~~cv~a 109 (764)
T KOG1063|consen 33 GPAIAVADPEKI--LIVTTLDGHVARVNCVHWLPTSEIVAEMVSGDSDGRVILWKLRDEYLIKIYTI-QGHCKECVCVVA 109 (764)
T ss_pred CceEEEeCcccc--eeEEeccCCccceEEEEEcccccccceEEEccCCCcEEEEEEeehheEEEEee-cCcceeEEEEEe
Confidence 344455444322 45678999999999999999887 8999999999999998733 345556 567766666543
Q ss_pred ecCCCCcEEEEEECCCcEEEEECCCCCCCCC----------------------------------------CCCCCCCce
Q 004477 102 VPETSDELVVSGAGDAEVRLFNLSRFSGRGL----------------------------------------DDNAITPSA 141 (751)
Q Consensus 102 sp~s~~~~l~sgs~Dg~V~vwd~~~~~~~~~----------------------------------------~~~~~~~~~ 141 (751)
.+. .....+.|++|.+||.+...--+. ...+...+.
T Consensus 110 ~~~----~~~~~~ad~~v~vw~~~~~e~~~~~~~rf~~k~~ipLcL~~~~~~~~~lla~Ggs~~~v~~~s~~~d~f~~v~ 185 (764)
T KOG1063|consen 110 RSS----VMTCKAADGTVSVWDKQQDEVFLLAVLRFEIKEAIPLCLAALKNNKTFLLACGGSKFVVDLYSSSADSFARVA 185 (764)
T ss_pred eee----EEEeeccCceEEEeecCCCceeeehheehhhhhHhhHHHhhhccCCcEEEEecCcceEEEEeccCCcceeEEE
Confidence 322 222237899999999953220000 011234566
Q ss_pred eecccCCceeEEEEecCCC--CEEEEEeCCCcEEEEecCCCCCCCCC-----CCCCCccceEEEeccc--CceecccCCC
Q 004477 142 LYQCHTRRVKKLAVEVGNP--HVVWSASEDGTLRQHDFRQGSSCPPA-----GSSHQECRNILLDLRC--GAKRSLADPP 212 (751)
Q Consensus 142 ~~~~h~~~V~~l~~sp~~~--~~l~s~s~Dg~I~iwDlr~~~~~~~~-----~~~~~~~~~~l~~~~~--~~~~~~~~~~ 212 (751)
.+.+|.+.|.+++|....+ .+|+|+|.|..||+|.+.-....... .....+ ..++..+.. -.+..-....
T Consensus 186 el~GH~DWIrsl~f~~~~~~~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~-~~~f~~l~~i~~~is~eall~ 264 (764)
T KOG1063|consen 186 ELEGHTDWIRSLAFARLGGDDLLLASSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSN-LPVFMILEEIQYRISFEALLM 264 (764)
T ss_pred EeeccchhhhhhhhhccCCCcEEEEecCCceEEEEEEEEecCCccccccccccccccC-CceeeeeeeEEEEEehhhhhc
Confidence 7889999999999986443 47899999999999998765422100 000001 111111100 0001112345
Q ss_pred CCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCccccCCCCCCCCccccccccccccCCccccceEEEEEcCCCC
Q 004477 213 KQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGE 292 (751)
Q Consensus 213 ~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~vt~v~fspdg~ 292 (751)
+|..+|.++.|+|. +..|++++.|.++.+|.......+.. ....+.+.++........-|+|+++
T Consensus 265 GHeDWV~sv~W~p~-~~~LLSASaDksmiiW~pd~~tGiWv--------------~~vRlGe~gg~a~GF~g~lw~~n~~ 329 (764)
T KOG1063|consen 265 GHEDWVYSVWWHPE-GLDLLSASADKSMIIWKPDENTGIWV--------------DVVRLGEVGGSAGGFWGGLWSPNSN 329 (764)
T ss_pred CcccceEEEEEccc-hhhheecccCcceEEEecCCccceEE--------------EEEEeecccccccceeeEEEcCCCC
Confidence 79999999999995 67999999999999998775432211 1122333344444688999999999
Q ss_pred EEEEEeCCCcEEEEECCCCC---cceeeeecCCCceeEEeCCCCCCcccCCCcccccccccccccccccCcchhHHHHHH
Q 004477 293 EVLLSYSGEHVYLMDVNHAG---GRAMRYTVGDASKIMSFTPTLNGLELQPPIHDFLQTNIRVRGEVATGLGKCRMLVEI 369 (751)
Q Consensus 293 ~Ll~~s~d~~I~lwdl~~~~---~~~~~~~~~~~~~~~~~sp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 369 (751)
.+++.+..|..++|...... ......+|-..++.+.|.|...- +. +.+.|+..+
T Consensus 330 ~ii~~g~~Gg~hlWkt~d~~~w~~~~~iSGH~~~V~dv~W~psGef----------------lL---svs~DQTTR---- 386 (764)
T KOG1063|consen 330 VIIAHGRTGGFHLWKTKDKTFWTQEPVISGHVDGVKDVDWDPSGEF----------------LL---SVSLDQTTR---- 386 (764)
T ss_pred EEEEecccCcEEEEeccCccceeeccccccccccceeeeecCCCCE----------------EE---Eecccccee----
Confidence 99999999999999833321 22333344555666666665432 11 222333322
Q ss_pred HHHhhhcCCChhHHHHHhHHHHhcccCCCCCchhhhhHhHHHHHhhcccccchhhhHHHhhHHHhcCCCCCcchHHHHHH
Q 004477 370 ARNSLEEGKHPYYGIEACNEVLEGHLSGIGPMLRHECLCIRAALLLKRKWKNDAQMAIRDCYNARRIDSSSFRAHLYMSE 449 (751)
Q Consensus 370 ~~~~~~~g~~~~~ai~~~~~~i~~~~~~~~~~~~~~~~~~ra~~~~~r~w~~d~y~al~d~~~a~~~~~~~~~a~~~~~~ 449 (751)
++++. ..+.-+++..+++.|.|.+.
T Consensus 387 -----------------------------------------------------lFa~w--g~q~~wHEiaRPQiHGyDl~ 411 (764)
T KOG1063|consen 387 -----------------------------------------------------LFARW--GRQQEWHEIARPQIHGYDLT 411 (764)
T ss_pred -----------------------------------------------------eeccc--ccccceeeecccccccccce
Confidence 22221 11122677889999999999
Q ss_pred HHHHhc-chHHHHHHHHHhcccCCCChhhhHHHHHHHHHHHHHHhhhccCCCCCCCCCCCCCCccccccch-hcccccCC
Q 004477 450 ALEQLC-KYKEALDFAIAAQCLDPSNSVMAEKVENIKKHIAAAETEKNNKANDGGARSEPRTGRVLSLSDI-IYRSEANS 527 (751)
Q Consensus 450 ~l~~l~-~~~~a~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~ 527 (751)
|+..+. +.++-..+.+++.+.|..+..+...+..+.. + ...+....+.++..++++||++ +|..+.++
T Consensus 412 c~~~vn~~~~FVSgAdEKVlRvF~aPk~fv~~l~~i~g--------~--~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~ 481 (764)
T KOG1063|consen 412 CLSFVNEDLQFVSGADEKVLRVFEAPKSFVKSLMAICG--------K--CFKGSDELPDGANVPALGLSNKAFFPGETNT 481 (764)
T ss_pred eeehccCCceeeecccceeeeeecCcHHHHHHHHHHhC--------c--cccCchhcccccccccccccCCCCccccccc
Confidence 999998 8888888889999999988888766555443 0 1111122467788899999998 55333222
Q ss_pred CCCCCCCCCCCCCCchhhhhhhcccCCCCCCCCCccccccccCccceeecccCCCccccccCCCCCC-------CCCCCC
Q 004477 528 DASQDGPRSEREDSDYDEEVEVDFHTSVPGDEGRDVEANFLHGSLNVRIHRRGDSARETVDANGSSG-------SPSSSS 600 (751)
Q Consensus 528 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~ 600 (751)
..... ...|. -.........+|+.|.+..+..|+...++.|.+|.|-+|..++.. ++++..
T Consensus 482 G~~~~----------~~~et--~~~~~p~~L~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ 549 (764)
T KOG1063|consen 482 GGEAA----------VCAET--PLAAAPCELTEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISPTGNLIASACKSSLK 549 (764)
T ss_pred ccccc----------eeeec--ccccCchhccCCChHHHHHHhccchhhHHhccCceeEEEEEecCCCCEEeehhhhCCc
Confidence 11100 00011 001111122357788888899999999999999999988887733 555556
Q ss_pred CCCCCCCCccccccccceeecccccceeeeEeeeccCCCCEEEEccCCCcEEEEecCC----------------eeeeee
Q 004477 601 QNDRIPYQPETVIDMKQRYVGHCNVGTDIKQASFLGQRGDYIASGSDDGRWFIWEKQT----------------VVNCVQ 664 (751)
Q Consensus 601 ~~~~~~~~~~~~~~~~~~~~gh~~~~~~i~~~~~~~~~~~~v~sgs~dg~~~iW~~~~----------------~v~~v~ 664 (751)
.+..+.+|...++..++.+.||.-++|.|+ |||||+||+|.|.|.++.+|++.. +|+.+.
T Consensus 550 ehAvI~lw~t~~W~~~~~L~~HsLTVT~l~----FSpdg~~LLsvsRDRt~sl~~~~~~~~~e~~fa~~k~HtRIIWdcs 625 (764)
T KOG1063|consen 550 EHAVIRLWNTANWLQVQELEGHSLTVTRLA----FSPDGRYLLSVSRDRTVSLYEVQEDIKDEFRFACLKAHTRIIWDCS 625 (764)
T ss_pred cceEEEEEeccchhhhheecccceEEEEEE----ECCCCcEEEEeecCceEEeeeeecccchhhhhccccccceEEEEcc
Confidence 889999999999999999999999999886 799999999999999999999765 899999
Q ss_pred ccCCCceEEEEecCCceEEecCCCC
Q 004477 665 CHPFDCVVATSGIDNTIKIWTPSAS 689 (751)
Q Consensus 665 ~~p~~~~las~~~d~~v~~W~~~~~ 689 (751)
|+|++.+|||||.|++||+|.-...
T Consensus 626 W~pde~~FaTaSRDK~VkVW~~~~~ 650 (764)
T KOG1063|consen 626 WSPDEKYFATASRDKKVKVWEEPDL 650 (764)
T ss_pred cCcccceeEEecCCceEEEEeccCc
Confidence 9999999999999999999986655
No 11
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.3e-34 Score=270.71 Aligned_cols=206 Identities=23% Similarity=0.351 Sum_probs=178.1
Q ss_pred ccEEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEecccCCcceEEEEEecCCCCcEEEEEECCCcEEE
Q 004477 42 QERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRL 121 (751)
Q Consensus 42 ~~~~L~gH~~~V~~l~~s~dg~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~Dg~V~v 121 (751)
..+.|..|++.|+++.|+-+|+|.++|+.|++|++|++..+.+++++ .+|...|..++.+.+ +..|++|+.|..|.+
T Consensus 9 r~~~l~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~liktY-sghG~EVlD~~~s~D--nskf~s~GgDk~v~v 85 (307)
T KOG0316|consen 9 RLSILDCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGALIKTY-SGHGHEVLDAALSSD--NSKFASCGGDKAVQV 85 (307)
T ss_pred hceeecccccceEEEEEccCCCEEEEcCCCceEEeecccccceeeee-cCCCceeeecccccc--ccccccCCCCceEEE
Confidence 45678999999999999999999999999999999999999999999 899999999999988 689999999999999
Q ss_pred EECCCCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCCCCCCCCCCccceEEEecc
Q 004477 122 FNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLR 201 (751)
Q Consensus 122 wd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~~~~~~~~~~~~l~~~~ 201 (751)
||+.++ +.++.+.+|...|+.++|+. +...++||+.|.++++||.|.....+
T Consensus 86 wDV~TG----------kv~Rr~rgH~aqVNtV~fNe-esSVv~SgsfD~s~r~wDCRS~s~eP----------------- 137 (307)
T KOG0316|consen 86 WDVNTG----------KVDRRFRGHLAQVNTVRFNE-ESSVVASGSFDSSVRLWDCRSRSFEP----------------- 137 (307)
T ss_pred EEcccC----------eeeeecccccceeeEEEecC-cceEEEeccccceeEEEEcccCCCCc-----------------
Confidence 999986 56889999999999999987 67899999999999999999875321
Q ss_pred cCceecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCccccCCCCCCCCccccccccccccCCccccc
Q 004477 202 CGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLH 281 (751)
Q Consensus 202 ~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 281 (751)
+.........|.++.++. +.|++|+.||++|.||+|++.....+ .|| +
T Consensus 138 ------iQildea~D~V~Si~v~~---heIvaGS~DGtvRtydiR~G~l~sDy--------------------~g~---p 185 (307)
T KOG0316|consen 138 ------IQILDEAKDGVSSIDVAE---HEIVAGSVDGTVRTYDIRKGTLSSDY--------------------FGH---P 185 (307)
T ss_pred ------cchhhhhcCceeEEEecc---cEEEeeccCCcEEEEEeecceeehhh--------------------cCC---c
Confidence 222222456788888874 68999999999999999988643221 122 6
Q ss_pred eEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 004477 282 LTHVTFSPNGEEVLLSYSGEHVYLMDVNH 310 (751)
Q Consensus 282 vt~v~fspdg~~Ll~~s~d~~I~lwdl~~ 310 (751)
|++++|++||+.+++++.|++++|.|-.+
T Consensus 186 it~vs~s~d~nc~La~~l~stlrLlDk~t 214 (307)
T KOG0316|consen 186 ITSVSFSKDGNCSLASSLDSTLRLLDKET 214 (307)
T ss_pred ceeEEecCCCCEEEEeeccceeeecccch
Confidence 99999999999999999999888887544
No 12
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=1.8e-35 Score=297.76 Aligned_cols=223 Identities=22% Similarity=0.287 Sum_probs=193.8
Q ss_pred ccccccccchhhhccccccEEeccCCCcEEEEEECCC--CCEEEEEeCCCcEEEEeCCCCeEEEEecccCCcceEEEEEe
Q 004477 25 DVNHSLQMHSSLVRRLSQERELEGHQGCVNAISWNSK--GSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFV 102 (751)
Q Consensus 25 ~~~~~l~~~~~~i~~~~~~~~L~gH~~~V~~l~~s~d--g~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~V~~v~fs 102 (751)
.+...+++|.. ..+..+++|.||++.|.++.|+|. +..||||+.||+|++|++.+..++..+ .+|...|..|+|+
T Consensus 194 swsG~~kvW~~--~~~~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e~~l~~l-~gH~~RVs~VafH 270 (459)
T KOG0272|consen 194 SWSGLVKVWSV--PQCNLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQETPLQDL-EGHLARVSRVAFH 270 (459)
T ss_pred ecCCceeEeec--CCcceeEEEeccccceeeEEEccCCCccceeeeccCCceeeeccCCCcchhhh-hcchhhheeeeec
Confidence 34566777764 445789999999999999999996 669999999999999999988999999 8999999999999
Q ss_pred cCCCCcEEEEEECCCcEEEEECCCCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCC
Q 004477 103 PETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSS 182 (751)
Q Consensus 103 p~s~~~~l~sgs~Dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~ 182 (751)
|+ |++|+|++.|.+-++||+.+. ..+....||...|.+|+|.| +|.+++|||.|..-||||+|++.+
T Consensus 271 Ps--G~~L~TasfD~tWRlWD~~tk----------~ElL~QEGHs~~v~~iaf~~-DGSL~~tGGlD~~~RvWDlRtgr~ 337 (459)
T KOG0272|consen 271 PS--GKFLGTASFDSTWRLWDLETK----------SELLLQEGHSKGVFSIAFQP-DGSLAATGGLDSLGRVWDLRTGRC 337 (459)
T ss_pred CC--Cceeeecccccchhhcccccc----------hhhHhhcccccccceeEecC-CCceeeccCccchhheeecccCcE
Confidence 99 999999999999999999975 34667889999999999999 779999999999999999999873
Q ss_pred CCCCCCCCCccceEEEecccCceecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCccccCCCCCCCC
Q 004477 183 CPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPP 262 (751)
Q Consensus 183 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~~~~~~~~~~~~ 262 (751)
+ .+..+|..+|.+++|+| +|..|+||+.|++++|||+|+.+.+..+
T Consensus 338 i-------------------------m~L~gH~k~I~~V~fsP-NGy~lATgs~Dnt~kVWDLR~r~~ly~i-------- 383 (459)
T KOG0272|consen 338 I-------------------------MFLAGHIKEILSVAFSP-NGYHLATGSSDNTCKVWDLRMRSELYTI-------- 383 (459)
T ss_pred E-------------------------EEecccccceeeEeECC-CceEEeecCCCCcEEEeeecccccceec--------
Confidence 2 23345888999999999 5899999999999999999987754332
Q ss_pred ccccccccccccCCccccceEEEEEcC-CCCEEEEEeCCCcEEEEECCC
Q 004477 263 CVNYFCPMHLSEHGRSSLHLTHVTFSP-NGEEVLLSYSGEHVYLMDVNH 310 (751)
Q Consensus 263 ~~~~~~~~~~~~~g~~~~~vt~v~fsp-dg~~Ll~~s~d~~I~lwdl~~ 310 (751)
|. |.+ -|+.|.|+| .|.+|++++.|++++||...+
T Consensus 384 ------pA------H~n-lVS~Vk~~p~~g~fL~TasyD~t~kiWs~~~ 419 (459)
T KOG0272|consen 384 ------PA------HSN-LVSQVKYSPQEGYFLVTASYDNTVKIWSTRT 419 (459)
T ss_pred ------cc------ccc-hhhheEecccCCeEEEEcccCcceeeecCCC
Confidence 33 444 399999999 788999999999999996544
No 13
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=1.4e-32 Score=263.77 Aligned_cols=214 Identities=22% Similarity=0.291 Sum_probs=181.0
Q ss_pred cccccEEeccCCCcEEEEEECCC-CCEEEEEeCCCcEEEEeCC-----CCeEEEEecccCCcceEEEEEecCCCCcEEEE
Q 004477 39 RLSQERELEGHQGCVNAISWNSK-GSLLISGSDDTHINVWSYS-----SRKLLHSIETGHSANVFCTKFVPETSDELVVS 112 (751)
Q Consensus 39 ~~~~~~~L~gH~~~V~~l~~s~d-g~~LaSgs~Dg~I~IWd~~-----~~~~~~~l~~~h~~~V~~v~fsp~s~~~~l~s 112 (751)
.+.+.-+|+||++.|..++..+. .+.|++++.|+++++|++. .|..++.+ .||...|..+..+++ +++.+|
T Consensus 4 ~l~l~~tl~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~-~GHsH~v~dv~~s~d--g~~alS 80 (315)
T KOG0279|consen 4 QLVLRGTLEGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDIKYGVPVRRL-TGHSHFVSDVVLSSD--GNFALS 80 (315)
T ss_pred hheeeeeecCCCceEEEEEeecCCCceEEEcccceEEEEEEeccCccccCceeeee-eccceEecceEEccC--CceEEe
Confidence 45566789999999999999986 5699999999999999875 45667777 899999999999999 899999
Q ss_pred EECCCcEEEEECCCCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCCCCCCCCCCc
Q 004477 113 GAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQE 192 (751)
Q Consensus 113 gs~Dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~~~~~~~~ 192 (751)
++.|+++++||+..+ ++.+.|.+|..-|.+++|++ +...++||+.|++|++|++-.....
T Consensus 81 ~swD~~lrlWDl~~g----------~~t~~f~GH~~dVlsva~s~-dn~qivSGSrDkTiklwnt~g~ck~--------- 140 (315)
T KOG0279|consen 81 ASWDGTLRLWDLATG----------ESTRRFVGHTKDVLSVAFST-DNRQIVSGSRDKTIKLWNTLGVCKY--------- 140 (315)
T ss_pred ccccceEEEEEecCC----------cEEEEEEecCCceEEEEecC-CCceeecCCCcceeeeeeecccEEE---------
Confidence 999999999999975 56889999999999999999 5578889999999999998764311
Q ss_pred cceEEEecccCceecccCCCCCccceEEEEEeCCC-CcEEEEEeCCCeEEEEeCCCCCCccccCCCCCCCCccccccccc
Q 004477 193 CRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTR-PHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMH 271 (751)
Q Consensus 193 ~~~~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~-~~~l~sgs~D~~IriwD~~~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (751)
.+ . ...+..+|.|+.|+|.. .-+|++++.|++|++||+++.+....+
T Consensus 141 ---t~-----------~-~~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~~~~----------------- 188 (315)
T KOG0279|consen 141 ---TI-----------H-EDSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQLRTTF----------------- 188 (315)
T ss_pred ---EE-----------e-cCCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcchhhcc-----------------
Confidence 11 0 11126799999999964 569999999999999999987643322
Q ss_pred cccCCccccceEEEEEcCCCCEEEEEeCCCcEEEEECCCC
Q 004477 272 LSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHA 311 (751)
Q Consensus 272 ~~~~g~~~~~vt~v~fspdg~~Ll~~s~d~~I~lwdl~~~ 311 (751)
.||.. .++.+++||||..+++|+.||.+.|||++.+
T Consensus 189 ---~gh~~-~v~t~~vSpDGslcasGgkdg~~~LwdL~~~ 224 (315)
T KOG0279|consen 189 ---IGHSG-YVNTVTVSPDGSLCASGGKDGEAMLWDLNEG 224 (315)
T ss_pred ---ccccc-cEEEEEECCCCCEEecCCCCceEEEEEccCC
Confidence 34555 4999999999999999999999999999985
No 14
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=2.1e-32 Score=261.32 Aligned_cols=219 Identities=21% Similarity=0.317 Sum_probs=183.6
Q ss_pred cccccEEeccCCCcEEEEEECCC-CCEEEEEeCCCcEEEEeCCC---CeEEEEecccCCcceEEEEEecCCCCcEEEEEE
Q 004477 39 RLSQERELEGHQGCVNAISWNSK-GSLLISGSDDTHINVWSYSS---RKLLHSIETGHSANVFCTKFVPETSDELVVSGA 114 (751)
Q Consensus 39 ~~~~~~~L~gH~~~V~~l~~s~d-g~~LaSgs~Dg~I~IWd~~~---~~~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs 114 (751)
++-.++.++||++.|+.++|+|- |.+|||||.|+.|+||+... ..+...+..+|+..|.+++|+|. |++|++||
T Consensus 3 ~l~~~~~~~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~--g~~La~aS 80 (312)
T KOG0645|consen 3 RLILEQKLSGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPH--GRYLASAS 80 (312)
T ss_pred cceeEEeecCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCC--CcEEEEee
Confidence 36678899999999999999998 99999999999999999874 45666676789999999999999 89999999
Q ss_pred CCCcEEEEECCCCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCCCCCCCCCCccc
Q 004477 115 GDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECR 194 (751)
Q Consensus 115 ~Dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~~~~~~~~~~ 194 (751)
.|.++.||.-..+ .++++.++.+|...|++++|++ ++.+||+|+.|++|-||.+.... +.+|.
T Consensus 81 FD~t~~Iw~k~~~--------efecv~~lEGHEnEVK~Vaws~-sG~~LATCSRDKSVWiWe~dedd--------Efec~ 143 (312)
T KOG0645|consen 81 FDATVVIWKKEDG--------EFECVATLEGHENEVKCVAWSA-SGNYLATCSRDKSVWIWEIDEDD--------EFECI 143 (312)
T ss_pred ccceEEEeecCCC--------ceeEEeeeeccccceeEEEEcC-CCCEEEEeeCCCeEEEEEecCCC--------cEEEE
Confidence 9999999987643 2477999999999999999999 78999999999999999987543 23444
Q ss_pred eEEEecccCceecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCccccCCCCCCCCcccccccccccc
Q 004477 195 NILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSE 274 (751)
Q Consensus 195 ~~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (751)
.++ ..|...|+.+.|+|. ..+|++++.|++|++|+...... =.|++.+
T Consensus 144 aVL--------------~~HtqDVK~V~WHPt-~dlL~S~SYDnTIk~~~~~~ddd----------W~c~~tl------- 191 (312)
T KOG0645|consen 144 AVL--------------QEHTQDVKHVIWHPT-EDLLFSCSYDNTIKVYRDEDDDD----------WECVQTL------- 191 (312)
T ss_pred eee--------------ccccccccEEEEcCC-cceeEEeccCCeEEEEeecCCCC----------eeEEEEe-------
Confidence 443 347788999999995 68999999999999998763110 0133333
Q ss_pred CCccccceEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 004477 275 HGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVN 309 (751)
Q Consensus 275 ~g~~~~~vt~v~fspdg~~Ll~~s~d~~I~lwdl~ 309 (751)
.+|.+ .|.+++|++.|..|++++.|++|+||-..
T Consensus 192 ~g~~~-TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~ 225 (312)
T KOG0645|consen 192 DGHEN-TVWSLAFDNIGSRLVSCSDDGTVSIWRLY 225 (312)
T ss_pred cCccc-eEEEEEecCCCceEEEecCCcceEeeeec
Confidence 45555 69999999999999999999999999754
No 15
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=100.00 E-value=8e-34 Score=284.56 Aligned_cols=199 Identities=24% Similarity=0.396 Sum_probs=168.9
Q ss_pred CCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEecccCCcceEEEEEecCCCCcEEEEEECCCcEEEEECCCCCC
Q 004477 50 QGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSG 129 (751)
Q Consensus 50 ~~~V~~l~~s~dg~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~Dg~V~vwd~~~~~~ 129 (751)
+-.|+.|.|.|+|+.|++|+..|.+.+|+.... .-.++.+.|...|.++.|+++ +.+++||+.+|.|++|+...
T Consensus 96 kc~V~~v~WtPeGRRLltgs~SGEFtLWNg~~f-nFEtilQaHDs~Vr~m~ws~~--g~wmiSgD~gG~iKyWqpnm--- 169 (464)
T KOG0284|consen 96 KCPVNVVRWTPEGRRLLTGSQSGEFTLWNGTSF-NFETILQAHDSPVRTMKWSHN--GTWMISGDKGGMIKYWQPNM--- 169 (464)
T ss_pred ccceeeEEEcCCCceeEeecccccEEEecCcee-eHHHHhhhhcccceeEEEccC--CCEEEEcCCCceEEecccch---
Confidence 457999999999999999999999999997432 223344799999999999999 89999999999999999985
Q ss_pred CCCCCCCCCCceeecccC-CceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCCCCCCCCCCccceEEEecccCceecc
Q 004477 130 RGLDDNAITPSALYQCHT-RRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSL 208 (751)
Q Consensus 130 ~~~~~~~~~~~~~~~~h~-~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 208 (751)
..++.++.|. ..|++++|+| +...|++||+||+|+|||++..+.-.
T Consensus 170 --------nnVk~~~ahh~eaIRdlafSp-nDskF~t~SdDg~ikiWdf~~~kee~------------------------ 216 (464)
T KOG0284|consen 170 --------NNVKIIQAHHAEAIRDLAFSP-NDSKFLTCSDDGTIKIWDFRMPKEER------------------------ 216 (464)
T ss_pred --------hhhHHhhHhhhhhhheeccCC-CCceeEEecCCCeEEEEeccCCchhh------------------------
Confidence 3356666665 9999999999 45778899999999999999876321
Q ss_pred cCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCccccCCCCCCCCccccccccccccCCccccceEEEEEc
Q 004477 209 ADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFS 288 (751)
Q Consensus 209 ~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~vt~v~fs 288 (751)
...+|...|++++|+|. ..+|++|+.|..|++||.+++..+.++ .+|.+ .|+.+.|+
T Consensus 217 -vL~GHgwdVksvdWHP~-kgLiasgskDnlVKlWDprSg~cl~tl--------------------h~HKn-tVl~~~f~ 273 (464)
T KOG0284|consen 217 -VLRGHGWDVKSVDWHPT-KGLIASGSKDNLVKLWDPRSGSCLATL--------------------HGHKN-TVLAVKFN 273 (464)
T ss_pred -eeccCCCCcceeccCCc-cceeEEccCCceeEeecCCCcchhhhh--------------------hhccc-eEEEEEEc
Confidence 11347788999999996 579999999999999999998765543 45655 59999999
Q ss_pred CCCCEEEEEeCCCcEEEEECCC
Q 004477 289 PNGEEVLLSYSGEHVYLMDVNH 310 (751)
Q Consensus 289 pdg~~Ll~~s~d~~I~lwdl~~ 310 (751)
|++++|++++.|..+++||+++
T Consensus 274 ~n~N~Llt~skD~~~kv~DiR~ 295 (464)
T KOG0284|consen 274 PNGNWLLTGSKDQSCKVFDIRT 295 (464)
T ss_pred CCCCeeEEccCCceEEEEehhH
Confidence 9999999999999999999876
No 16
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=3.4e-32 Score=302.62 Aligned_cols=214 Identities=27% Similarity=0.445 Sum_probs=180.1
Q ss_pred cccEEeccC-CCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCe--EEEEecccCCcceEEEEEecCCCCcEEEEEECCC
Q 004477 41 SQERELEGH-QGCVNAISWNSKGSLLISGSDDTHINVWSYSSRK--LLHSIETGHSANVFCTKFVPETSDELVVSGAGDA 117 (751)
Q Consensus 41 ~~~~~L~gH-~~~V~~l~~s~dg~~LaSgs~Dg~I~IWd~~~~~--~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~Dg 117 (751)
..+..+.+| ...|.++.|+++|+.|++++.|+.+++|+..+.+ .+..+ .+|...|++++|+|+ ++++++|+.|+
T Consensus 149 ~~~~~~~~~~~~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~l-~~h~~~v~~~~fs~d--~~~l~s~s~D~ 225 (456)
T KOG0266|consen 149 SLEQTLAGHECPSVTCVDFSPDGRALAAASSDGLIRIWKLEGIKSNLLREL-SGHTRGVSDVAFSPD--GSYLLSGSDDK 225 (456)
T ss_pred eeeeeecccccCceEEEEEcCCCCeEEEccCCCcEEEeecccccchhhccc-cccccceeeeEECCC--CcEEEEecCCc
Confidence 346667666 8899999999999999999999999999997777 66666 799999999999999 78999999999
Q ss_pred cEEEEECCCCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCCCCCCCCCCccceEE
Q 004477 118 EVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNIL 197 (751)
Q Consensus 118 ~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~~~~~~~~~~~~l 197 (751)
+|+|||+... + ..++++.+|...|++++|+|.+ +++++|+.|++|++||+++++..
T Consensus 226 tiriwd~~~~-~--------~~~~~l~gH~~~v~~~~f~p~g-~~i~Sgs~D~tvriWd~~~~~~~-------------- 281 (456)
T KOG0266|consen 226 TLRIWDLKDD-G--------RNLKTLKGHSTYVTSVAFSPDG-NLLVSGSDDGTVRIWDVRTGECV-------------- 281 (456)
T ss_pred eEEEeeccCC-C--------eEEEEecCCCCceEEEEecCCC-CEEEEecCCCcEEEEeccCCeEE--------------
Confidence 9999999432 1 4588999999999999999955 99999999999999999986532
Q ss_pred EecccCceecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCccccCCCCCCCCccccccccccccCCc
Q 004477 198 LDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGR 277 (751)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 277 (751)
.....|...|++++|++ ++++|++++.|+.|+|||+.++... |+..+ .++
T Consensus 282 -----------~~l~~hs~~is~~~f~~-d~~~l~s~s~d~~i~vwd~~~~~~~-----------~~~~~-------~~~ 331 (456)
T KOG0266|consen 282 -----------RKLKGHSDGISGLAFSP-DGNLLVSASYDGTIRVWDLETGSKL-----------CLKLL-------SGA 331 (456)
T ss_pred -----------EeeeccCCceEEEEECC-CCCEEEEcCCCccEEEEECCCCcee-----------eeecc-------cCC
Confidence 22344788999999999 4799999999999999999987621 11111 112
Q ss_pred ccc-ceEEEEEcCCCCEEEEEeCCCcEEEEECCCC
Q 004477 278 SSL-HLTHVTFSPNGEEVLLSYSGEHVYLMDVNHA 311 (751)
Q Consensus 278 ~~~-~vt~v~fspdg~~Ll~~s~d~~I~lwdl~~~ 311 (751)
... +++++.|+|+|.+|++++.|+.+++||+..+
T Consensus 332 ~~~~~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~ 366 (456)
T KOG0266|consen 332 ENSAPVTSVQFSPNGKYLLSASLDRTLKLWDLRSG 366 (456)
T ss_pred CCCCceeEEEECCCCcEEEEecCCCeEEEEEccCC
Confidence 222 5899999999999999999999999998873
No 17
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=8.1e-33 Score=273.93 Aligned_cols=180 Identities=17% Similarity=0.285 Sum_probs=162.1
Q ss_pred ccchhhhccccccEEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEecccCCcceEEEEEecCCCCcEE
Q 004477 31 QMHSSLVRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELV 110 (751)
Q Consensus 31 ~~~~~~i~~~~~~~~L~gH~~~V~~l~~s~dg~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~s~~~~l 110 (751)
+....++.+..+.+.|.||...|+.+-|.|+-.++++++.|++|++||..++++...+ .||+..|++|+|... |++|
T Consensus 89 ~~~~~wipRp~l~~~l~g~r~~vt~v~~hp~~~~v~~as~d~tikv~D~~tg~~e~~L-rGHt~sv~di~~~a~--Gk~l 165 (406)
T KOG0295|consen 89 RTPALWIPRPNLVQKLAGHRSSVTRVIFHPSEALVVSASEDATIKVFDTETGELERSL-RGHTDSVFDISFDAS--GKYL 165 (406)
T ss_pred cChhhcCCCCCchhhhhccccceeeeeeccCceEEEEecCCceEEEEEccchhhhhhh-hccccceeEEEEecC--ccEE
Confidence 4445688898999999999999999999999999999999999999999999998888 899999999999988 8999
Q ss_pred EEEECCCcEEEEECCCCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCCCCCCCCC
Q 004477 111 VSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSH 190 (751)
Q Consensus 111 ~sgs~Dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~~~~~~ 190 (751)
++|+.|-.+++||.... .++++.+.+|...|.+++|-| .+.+++|++.|.+|++|++.++-+
T Consensus 166 ~tcSsDl~~~LWd~~~~---------~~c~ks~~gh~h~vS~V~f~P-~gd~ilS~srD~tik~We~~tg~c-------- 227 (406)
T KOG0295|consen 166 ATCSSDLSAKLWDFDTF---------FRCIKSLIGHEHGVSSVFFLP-LGDHILSCSRDNTIKAWECDTGYC-------- 227 (406)
T ss_pred EecCCccchhheeHHHH---------HHHHHHhcCcccceeeEEEEe-cCCeeeecccccceeEEeccccee--------
Confidence 99999999999999863 256888899999999999999 568999999999999999998763
Q ss_pred CccceEEEecccCceecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCC
Q 004477 191 QECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLP 249 (751)
Q Consensus 191 ~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~ 249 (751)
+..+++|..+|..++.+. |+.++++++.|.+|++|-..+.+
T Consensus 228 -----------------v~t~~~h~ewvr~v~v~~-DGti~As~s~dqtl~vW~~~t~~ 268 (406)
T KOG0295|consen 228 -----------------VKTFPGHSEWVRMVRVNQ-DGTIIASCSNDQTLRVWVVATKQ 268 (406)
T ss_pred -----------------EEeccCchHhEEEEEecC-CeeEEEecCCCceEEEEEeccch
Confidence 344556778999999999 58999999999999999988764
No 18
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=100.00 E-value=6.5e-32 Score=254.75 Aligned_cols=188 Identities=18% Similarity=0.299 Sum_probs=156.6
Q ss_pred CEEEEEeCCCcEEEEeCCCCeEEEEecccCCcceEEEEEecCCCCcEEEEEECCCcEEEEECCCCCCCCCCCCCCCCcee
Q 004477 63 SLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSAL 142 (751)
Q Consensus 63 ~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~Dg~V~vwd~~~~~~~~~~~~~~~~~~~ 142 (751)
-+|||+|.|.+|++|...+|.+..++ +-..+.|+.+...|+ +..||+++ ...||+||+.+... .|+.+
T Consensus 11 viLvsA~YDhTIRfWqa~tG~C~rTi-qh~dsqVNrLeiTpd--k~~LAaa~-~qhvRlyD~~S~np--------~Pv~t 78 (311)
T KOG0315|consen 11 VILVSAGYDHTIRFWQALTGICSRTI-QHPDSQVNRLEITPD--KKDLAAAG-NQHVRLYDLNSNNP--------NPVAT 78 (311)
T ss_pred eEEEeccCcceeeeeehhcCeEEEEE-ecCccceeeEEEcCC--cchhhhcc-CCeeEEEEccCCCC--------CceeE
Confidence 48999999999999999999999999 556788999999999 67777765 47899999997532 57999
Q ss_pred ecccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCCCCCCCCCCccceEEEecccCceecccCCCCCccceEEEE
Q 004477 143 YQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCD 222 (751)
Q Consensus 143 ~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~i~ 222 (751)
+.+|+..|+.+.|.. +++.+.+||+||+++|||+|..... ..-.+..+|+++.
T Consensus 79 ~e~h~kNVtaVgF~~-dgrWMyTgseDgt~kIWdlR~~~~q--------------------------R~~~~~spVn~vv 131 (311)
T KOG0315|consen 79 FEGHTKNVTAVGFQC-DGRWMYTGSEDGTVKIWDLRSLSCQ--------------------------RNYQHNSPVNTVV 131 (311)
T ss_pred EeccCCceEEEEEee-cCeEEEecCCCceEEEEeccCcccc--------------------------hhccCCCCcceEE
Confidence 999999999999998 7799999999999999999985421 1112557899999
Q ss_pred EeCCCCcEEEEEeCCCeEEEEeCCCCCCccccCCCCCCCCccccccccccccCCccccceEEEEEcCCCCEEEEEeCCCc
Q 004477 223 ISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEH 302 (751)
Q Consensus 223 ~sp~~~~~l~sgs~D~~IriwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~vt~v~fspdg~~Ll~~s~d~~ 302 (751)
.+|. ...|++|..+|.|++||++..... ....|... ..|.+++..|||.+|+++...|.
T Consensus 132 lhpn-QteLis~dqsg~irvWDl~~~~c~-------------~~liPe~~-------~~i~sl~v~~dgsml~a~nnkG~ 190 (311)
T KOG0315|consen 132 LHPN-QTELISGDQSGNIRVWDLGENSCT-------------HELIPEDD-------TSIQSLTVMPDGSMLAAANNKGN 190 (311)
T ss_pred ecCC-cceEEeecCCCcEEEEEccCCccc-------------cccCCCCC-------cceeeEEEcCCCcEEEEecCCcc
Confidence 9995 678999999999999999875322 22222111 25999999999999999999999
Q ss_pred EEEEECCC
Q 004477 303 VYLMDVNH 310 (751)
Q Consensus 303 I~lwdl~~ 310 (751)
.|+|++-+
T Consensus 191 cyvW~l~~ 198 (311)
T KOG0315|consen 191 CYVWRLLN 198 (311)
T ss_pred EEEEEccC
Confidence 99999766
No 19
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=3.2e-32 Score=291.25 Aligned_cols=272 Identities=20% Similarity=0.243 Sum_probs=199.7
Q ss_pred hccccccEEecc-CCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEecccCCcceEEEEEecCCCCcEEEEEEC
Q 004477 37 VRRLSQERELEG-HQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAG 115 (751)
Q Consensus 37 i~~~~~~~~L~g-H~~~V~~l~~s~dg~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~ 115 (751)
+.+.++++.++. |+++|..++|+|.|.+||+|+.|+.|+|||+..+.+.+.| .||.+.|.++.|.|+.+-.+|++|+.
T Consensus 91 L~tgk~irswKa~He~Pvi~ma~~~~g~LlAtggaD~~v~VWdi~~~~~th~f-kG~gGvVssl~F~~~~~~~lL~sg~~ 169 (775)
T KOG0319|consen 91 LPTGKLIRSWKAIHEAPVITMAFDPTGTLLATGGADGRVKVWDIKNGYCTHSF-KGHGGVVSSLLFHPHWNRWLLASGAT 169 (775)
T ss_pred cccchHhHhHhhccCCCeEEEEEcCCCceEEeccccceEEEEEeeCCEEEEEe-cCCCceEEEEEeCCccchhheeecCC
Confidence 566688899998 9999999999999999999999999999999999999999 89999999999999965567899999
Q ss_pred CCcEEEEECCCCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCCCCCC--------
Q 004477 116 DAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAG-------- 187 (751)
Q Consensus 116 Dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~~~-------- 187 (751)
|++|++||+.... .++.++..|...|++++|++ ++..++++|.|..|.+||+.+.+......
T Consensus 170 D~~v~vwnl~~~~---------tcl~~~~~H~S~vtsL~~~~-d~~~~ls~~RDkvi~vwd~~~~~~l~~lp~ye~~E~v 239 (775)
T KOG0319|consen 170 DGTVRVWNLNDKR---------TCLHTMILHKSAVTSLAFSE-DSLELLSVGRDKVIIVWDLVQYKKLKTLPLYESLESV 239 (775)
T ss_pred CceEEEEEcccCc---------hHHHHHHhhhhheeeeeecc-CCceEEEeccCcEEEEeehhhhhhhheechhhheeeE
Confidence 9999999998532 34788899999999999999 56778899999999999985543220000
Q ss_pred --------------------------------------CC----------------------------------------
Q 004477 188 --------------------------------------SS---------------------------------------- 189 (751)
Q Consensus 188 --------------------------------------~~---------------------------------------- 189 (751)
..
T Consensus 240 v~l~~~~~~~~~~~~TaG~~g~~~~~d~es~~~~~~~~~~~~~e~~~~~~~~~~~~~l~vtaeQnl~l~d~~~l~i~k~i 319 (775)
T KOG0319|consen 240 VRLREELGGKGEYIITAGGSGVVQYWDSESGKCVYKQRQSDSEEIDHLLAIESMSQLLLVTAEQNLFLYDEDELTIVKQI 319 (775)
T ss_pred EEechhcCCcceEEEEecCCceEEEEecccchhhhhhccCCchhhhcceeccccCceEEEEccceEEEEEccccEEehhh
Confidence 00
Q ss_pred ----------------------------------------------------------------CCccceEEEecc--cC
Q 004477 190 ----------------------------------------------------------------HQECRNILLDLR--CG 203 (751)
Q Consensus 190 ----------------------------------------------------------------~~~~~~~l~~~~--~~ 203 (751)
..++..++|.+. ..
T Consensus 320 vG~ndEI~Dm~~lG~e~~~laVATNs~~lr~y~~~~~~c~ii~GH~e~vlSL~~~~~g~llat~sKD~svilWr~~~~~~ 399 (775)
T KOG0319|consen 320 VGYNDEILDMKFLGPEESHLAVATNSPELRLYTLPTSYCQIIPGHTEAVLSLDVWSSGDLLATGSKDKSVILWRLNNNCS 399 (775)
T ss_pred cCCchhheeeeecCCccceEEEEeCCCceEEEecCCCceEEEeCchhheeeeeecccCcEEEEecCCceEEEEEecCCcc
Confidence 000000111110 00
Q ss_pred ceecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCccccCCCCCCCCccccccccccccCCccccceE
Q 004477 204 AKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLT 283 (751)
Q Consensus 204 ~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~vt 283 (751)
....+....+|...|.+++++..+...|++++.|.+|++|++...++... +...+. ......|.. .|+
T Consensus 400 ~~~~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~-------~~~~~~----~~t~~aHdK-dIN 467 (775)
T KOG0319|consen 400 KSLCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAF-------PIVLTC----RYTERAHDK-DIN 467 (775)
T ss_pred hhhhhhhhcccccccceeeecccCccEEEEecCCceEEEecCCCcccccc-------cceehh----hHHHHhhcc-ccc
Confidence 00111222357777888888887788999999999999999987332211 111100 011123333 499
Q ss_pred EEEEcCCCCEEEEEeCCCcEEEEECCCCCcceeeeecCCCceeEEeCC
Q 004477 284 HVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVGDASKIMSFTP 331 (751)
Q Consensus 284 ~v~fspdg~~Ll~~s~d~~I~lwdl~~~~~~~~~~~~~~~~~~~~~sp 331 (751)
+|+++|+.+.+++|+.|.+.+||++.......+..+|..-+..+.|+|
T Consensus 468 ~Vaia~ndkLiAT~SqDktaKiW~le~~~l~~vLsGH~RGvw~V~Fs~ 515 (775)
T KOG0319|consen 468 CVAIAPNDKLIATGSQDKTAKIWDLEQLRLLGVLSGHTRGVWCVSFSK 515 (775)
T ss_pred ceEecCCCceEEecccccceeeecccCceEEEEeeCCccceEEEEecc
Confidence 999999999999999999999999997655555555555555555555
No 20
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=100.00 E-value=8.2e-31 Score=270.49 Aligned_cols=179 Identities=18% Similarity=0.307 Sum_probs=140.9
Q ss_pred ccccccEEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEec--ccCCcceEEEEEecCCCCcEEEEEEC
Q 004477 38 RRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIE--TGHSANVFCTKFVPETSDELVVSGAG 115 (751)
Q Consensus 38 ~~~~~~~~L~gH~~~V~~l~~s~dg~~LaSgs~Dg~I~IWd~~~~~~~~~l~--~~h~~~V~~v~fsp~s~~~~l~sgs~ 115 (751)
..++...+++.|+.-|+|+.|+|||+++||++.||+|.|||-.++..+..+. .+|++.|++++|+|+ +..|+|++.
T Consensus 178 PPFKFk~s~r~HskFV~~VRysPDG~~Fat~gsDgki~iyDGktge~vg~l~~~~aHkGsIfalsWsPD--s~~~~T~Sa 255 (603)
T KOG0318|consen 178 PPFKFKSSFREHSKFVNCVRYSPDGSRFATAGSDGKIYIYDGKTGEKVGELEDSDAHKGSIFALSWSPD--STQFLTVSA 255 (603)
T ss_pred CCeeeeecccccccceeeEEECCCCCeEEEecCCccEEEEcCCCccEEEEecCCCCccccEEEEEECCC--CceEEEecC
Confidence 3456778889999999999999999999999999999999999999999882 389999999999999 699999999
Q ss_pred CCcEEEEECCCCCCCC-------C--------------------------CCCCCCCceeecccCCceeEEEEecCCCCE
Q 004477 116 DAEVRLFNLSRFSGRG-------L--------------------------DDNAITPSALYQCHTRRVKKLAVEVGNPHV 162 (751)
Q Consensus 116 Dg~V~vwd~~~~~~~~-------~--------------------------~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~ 162 (751)
|.+++|||+.+..... + ......+++++.+|...|+++..+| ++..
T Consensus 256 Dkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~-d~~~ 334 (603)
T KOG0318|consen 256 DKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQKDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSP-DGKT 334 (603)
T ss_pred CceEEEEEeeccceEEEeecCCchhceEEEEEEeCCeEEEEEcCcEEEEecccCCChhheecccccceeEEEEcC-CCCE
Confidence 9999999998643211 0 1122347788999999999999999 5588
Q ss_pred EEEEeCCCcEEEEecCCCCCCCCCCCCCCccceEEEecccCceecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEE
Q 004477 163 VWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARL 242 (751)
Q Consensus 163 l~s~s~Dg~I~iwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~Iri 242 (751)
|.||+.||.|.-||..++...+..+.. |...|++++-+. ...+++.+.|.++|+
T Consensus 335 i~SgsyDG~I~~W~~~~g~~~~~~g~~------------------------h~nqI~~~~~~~--~~~~~t~g~Dd~l~~ 388 (603)
T KOG0318|consen 335 IYSGSYDGHINSWDSGSGTSDRLAGKG------------------------HTNQIKGMAASE--SGELFTIGWDDTLRV 388 (603)
T ss_pred EEeeccCceEEEEecCCcccccccccc------------------------ccceEEEEeecC--CCcEEEEecCCeEEE
Confidence 999999999999999998765433222 444555555543 134555555556666
Q ss_pred EeC
Q 004477 243 YDR 245 (751)
Q Consensus 243 wD~ 245 (751)
.++
T Consensus 389 ~~~ 391 (603)
T KOG0318|consen 389 ISL 391 (603)
T ss_pred Eec
Confidence 544
No 21
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=99.98 E-value=4.8e-31 Score=260.26 Aligned_cols=214 Identities=19% Similarity=0.256 Sum_probs=181.0
Q ss_pred hhhccccccEEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEecccCCcceEEEEEecCCCCcEEEEEE
Q 004477 35 SLVRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGA 114 (751)
Q Consensus 35 ~~i~~~~~~~~L~gH~~~V~~l~~s~dg~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs 114 (751)
.+-...++.+.++||.+-|.||++.|..++|+||+.|++|+|||+.+|++..++ +||...|..|++++- -.|+++++
T Consensus 136 eWHapwKl~rVi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~Lkltl-tGhi~~vr~vavS~r--HpYlFs~g 212 (460)
T KOG0285|consen 136 EWHAPWKLYRVISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLKLTL-TGHIETVRGVAVSKR--HPYLFSAG 212 (460)
T ss_pred cccCcceehhhhhhccceEEEEeeCCCceeEEecCCCceeEEEEcccCeEEEee-cchhheeeeeeeccc--CceEEEec
Confidence 455667888999999999999999999999999999999999999999999999 999999999999999 48999999
Q ss_pred CCCcEEEEECCCCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCCCCCCCCCCccc
Q 004477 115 GDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECR 194 (751)
Q Consensus 115 ~Dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~~~~~~~~~~ 194 (751)
.|+.|+.||++.. +.++.+.+|-..|.+++.+|.. ..|++|+.|.++|+||+|+...
T Consensus 213 edk~VKCwDLe~n----------kvIR~YhGHlS~V~~L~lhPTl-dvl~t~grDst~RvWDiRtr~~------------ 269 (460)
T KOG0285|consen 213 EDKQVKCWDLEYN----------KVIRHYHGHLSGVYCLDLHPTL-DVLVTGGRDSTIRVWDIRTRAS------------ 269 (460)
T ss_pred CCCeeEEEechhh----------hhHHHhccccceeEEEeccccc-eeEEecCCcceEEEeeecccce------------
Confidence 9999999999975 5688999999999999999954 7899999999999999999752
Q ss_pred eEEEecccCceecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCccccCCCCCCCCcccccccccccc
Q 004477 195 NILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSE 274 (751)
Q Consensus 195 ~~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (751)
+....+|...|.++.+.|.+ -.+++|+.|++||+||++.++....+
T Consensus 270 -------------V~~l~GH~~~V~~V~~~~~d-pqvit~S~D~tvrlWDl~agkt~~tl-------------------- 315 (460)
T KOG0285|consen 270 -------------VHVLSGHTNPVASVMCQPTD-PQVITGSHDSTVRLWDLRAGKTMITL-------------------- 315 (460)
T ss_pred -------------EEEecCCCCcceeEEeecCC-CceEEecCCceEEEeeeccCceeEee--------------------
Confidence 33445688899999999975 47999999999999999987643221
Q ss_pred CCccccceEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 004477 275 HGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNH 310 (751)
Q Consensus 275 ~g~~~~~vt~v~fspdg~~Ll~~s~d~~I~lwdl~~ 310 (751)
-|+...|.+++.+|....+++++.| .|+-|++..
T Consensus 316 -t~hkksvral~lhP~e~~fASas~d-nik~w~~p~ 349 (460)
T KOG0285|consen 316 -THHKKSVRALCLHPKENLFASASPD-NIKQWKLPE 349 (460)
T ss_pred -ecccceeeEEecCCchhhhhccCCc-cceeccCCc
Confidence 1223358889999988777776655 455554433
No 22
>PLN00181 protein SPA1-RELATED; Provisional
Probab=99.98 E-value=2.2e-30 Score=309.11 Aligned_cols=205 Identities=18% Similarity=0.252 Sum_probs=164.0
Q ss_pred eccCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCC----e----EEEEecccCCcceEEEEEecCCCCcEEEEEECCC
Q 004477 46 LEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSR----K----LLHSIETGHSANVFCTKFVPETSDELVVSGAGDA 117 (751)
Q Consensus 46 L~gH~~~V~~l~~s~dg~~LaSgs~Dg~I~IWd~~~~----~----~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~Dg 117 (751)
+.+|.+.|++++|+|+|++||||+.|++|+||+.... . ....+ .+...|.+++|+|.. +.+|++++.|+
T Consensus 479 ~~~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~--~~~~~v~~l~~~~~~-~~~las~~~Dg 555 (793)
T PLN00181 479 LLNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVEL--ASRSKLSGICWNSYI-KSQVASSNFEG 555 (793)
T ss_pred ccCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEe--cccCceeeEEeccCC-CCEEEEEeCCC
Confidence 4569999999999999999999999999999997532 1 12223 345689999999864 68999999999
Q ss_pred cEEEEECCCCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCCCCCCCCCCccceEE
Q 004477 118 EVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNIL 197 (751)
Q Consensus 118 ~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~~~~~~~~~~~~l 197 (751)
+|+|||+.+. +.+..+.+|...|++++|+|.++.+|+||+.||+|++||++++... ..+
T Consensus 556 ~v~lWd~~~~----------~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~-----------~~~ 614 (793)
T PLN00181 556 VVQVWDVARS----------QLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSI-----------GTI 614 (793)
T ss_pred eEEEEECCCC----------eEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEE-----------EEE
Confidence 9999999864 4577888999999999999867889999999999999999876421 111
Q ss_pred EecccCceecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCccccCCCCCCCCccccccccccccCCc
Q 004477 198 LDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGR 277 (751)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 277 (751)
. ....+.++.|++.++.+|++|+.|+.|++||+++.... ...+ .+|
T Consensus 615 ~---------------~~~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~~------------~~~~-------~~h 660 (793)
T PLN00181 615 K---------------TKANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLP------------LCTM-------IGH 660 (793)
T ss_pred e---------------cCCCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCcc------------ceEe-------cCC
Confidence 0 12468899997767899999999999999999864310 0111 234
Q ss_pred cccceEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 004477 278 SSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNH 310 (751)
Q Consensus 278 ~~~~vt~v~fspdg~~Ll~~s~d~~I~lwdl~~ 310 (751)
.. .|+++.|. ++.+|++++.|+.|+|||+..
T Consensus 661 ~~-~V~~v~f~-~~~~lvs~s~D~~ikiWd~~~ 691 (793)
T PLN00181 661 SK-TVSYVRFV-DSSTLVSSSTDNTLKLWDLSM 691 (793)
T ss_pred CC-CEEEEEEe-CCCEEEEEECCCEEEEEeCCC
Confidence 43 59999997 788999999999999999865
No 23
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.98 E-value=7.4e-30 Score=250.00 Aligned_cols=216 Identities=22% Similarity=0.351 Sum_probs=173.5
Q ss_pred ccccccEEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEecccCCcceEEEEEecCCCCcEEEEEEC--
Q 004477 38 RRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAG-- 115 (751)
Q Consensus 38 ~~~~~~~~L~gH~~~V~~l~~s~dg~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~-- 115 (751)
+++++.+.+..-.+.|++|.|+++|.+|++++.|-+++|||..+++++.++ ..++..|..++|... ...++.++.
T Consensus 2 ~s~~~ak~f~~~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti-~skkyG~~~~~Fth~--~~~~i~sStk~ 78 (311)
T KOG1446|consen 2 RSFRPAKVFRETNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTI-NSKKYGVDLACFTHH--SNTVIHSSTKE 78 (311)
T ss_pred cccccccccccCCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeEe-ecccccccEEEEecC--CceEEEccCCC
Confidence 456777888888899999999999999999999999999999999999999 778889999999988 455665555
Q ss_pred CCcEEEEECCCCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCCCCCCCCCCccce
Q 004477 116 DAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRN 195 (751)
Q Consensus 116 Dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~~~~~~~~~~~ 195 (751)
|.+||.-++... +.++.|.||...|.+|+.+| .+..|+|++.|++|++||+|..++. .
T Consensus 79 d~tIryLsl~dN----------kylRYF~GH~~~V~sL~~sP-~~d~FlS~S~D~tvrLWDlR~~~cq-----------g 136 (311)
T KOG1446|consen 79 DDTIRYLSLHDN----------KYLRYFPGHKKRVNSLSVSP-KDDTFLSSSLDKTVRLWDLRVKKCQ-----------G 136 (311)
T ss_pred CCceEEEEeecC----------ceEEEcCCCCceEEEEEecC-CCCeEEecccCCeEEeeEecCCCCc-----------e
Confidence 899999999875 66999999999999999999 4588999999999999999976532 1
Q ss_pred EEEecccCceecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCccccCCCCCCCCccccccccccccC
Q 004477 196 ILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEH 275 (751)
Q Consensus 196 ~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (751)
.+ +...-..++|.|. |-++|++.....|+|||+|+...- ....|....
T Consensus 137 ~l----------------~~~~~pi~AfDp~-GLifA~~~~~~~IkLyD~Rs~dkg-----------PF~tf~i~~---- 184 (311)
T KOG1446|consen 137 LL----------------NLSGRPIAAFDPE-GLIFALANGSELIKLYDLRSFDKG-----------PFTTFSITD---- 184 (311)
T ss_pred EE----------------ecCCCcceeECCC-CcEEEEecCCCeEEEEEecccCCC-----------CceeEccCC----
Confidence 11 1122345789995 788888888889999999986421 112221111
Q ss_pred CccccceEEEEEcCCCCEEEEEeCCCcEEEEECCCC
Q 004477 276 GRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHA 311 (751)
Q Consensus 276 g~~~~~vt~v~fspdg~~Ll~~s~d~~I~lwdl~~~ 311 (751)
......+.+.|||||++|+.++..+.+++.|.-+|
T Consensus 185 -~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G 219 (311)
T KOG1446|consen 185 -NDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDG 219 (311)
T ss_pred -CCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCC
Confidence 11124899999999999999999999999986664
No 24
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.98 E-value=2.4e-31 Score=290.43 Aligned_cols=219 Identities=20% Similarity=0.333 Sum_probs=174.2
Q ss_pred hccccccEEec-cCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCC--------------------------------C-
Q 004477 37 VRRLSQERELE-GHQGCVNAISWNSKGSLLISGSDDTHINVWSYSS--------------------------------R- 82 (751)
Q Consensus 37 i~~~~~~~~L~-gH~~~V~~l~~s~dg~~LaSgs~Dg~I~IWd~~~--------------------------------~- 82 (751)
+..+...+++. .|++.|+++.||+||+||||||.|+.|+||.+.. .
T Consensus 253 lsal~~~Qe~~~ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~ 332 (712)
T KOG0283|consen 253 LSALTVVQEISNAHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKI 332 (712)
T ss_pred ceeeEEeeccccccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccc
Confidence 44455667777 9999999999999999999999999999998654 0
Q ss_pred ---------------------------eEEEEecccCCcceEEEEEecCCCCcEEEEEECCCcEEEEECCCCCCCCCCCC
Q 004477 83 ---------------------------KLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDN 135 (751)
Q Consensus 83 ---------------------------~~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~Dg~V~vwd~~~~~~~~~~~~ 135 (751)
++++.+ .||.+.|.+|.|+.+ ++|+|+|.|.+||||++...
T Consensus 333 ~~~~s~~~~~~~s~~~~~p~~~f~f~ekP~~ef-~GHt~DILDlSWSKn---~fLLSSSMDKTVRLWh~~~~-------- 400 (712)
T KOG0283|consen 333 SSRTSSSRKGSQSPCVLLPLKAFVFSEKPFCEF-KGHTADILDLSWSKN---NFLLSSSMDKTVRLWHPGRK-------- 400 (712)
T ss_pred cccccccccccCCccccCCCccccccccchhhh-hccchhheecccccC---CeeEeccccccEEeecCCCc--------
Confidence 011112 699999999999987 79999999999999999864
Q ss_pred CCCCceeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCCCCCCCCCCccceEEEecccCceecccCCCCCc
Q 004477 136 AITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQT 215 (751)
Q Consensus 136 ~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 215 (751)
.++++|. |.+.|+||+|+|.+.++|+||+-||.||||++-..+ .+.|. .-.
T Consensus 401 --~CL~~F~-HndfVTcVaFnPvDDryFiSGSLD~KvRiWsI~d~~-------------Vv~W~-------------Dl~ 451 (712)
T KOG0283|consen 401 --ECLKVFS-HNDFVTCVAFNPVDDRYFISGSLDGKVRLWSISDKK-------------VVDWN-------------DLR 451 (712)
T ss_pred --ceeeEEe-cCCeeEEEEecccCCCcEeecccccceEEeecCcCe-------------eEeeh-------------hhh
Confidence 5677776 999999999999999999999999999999997754 22332 123
Q ss_pred cceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCccccCCCCCCCCccccccccccccCCccccceEEEEEcCC-CCEE
Q 004477 216 LSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPN-GEEV 294 (751)
Q Consensus 216 ~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~vt~v~fspd-g~~L 294 (751)
.-|++++|.|+ |.+.++|+.+|.+++|+.+..+.....+......+ ...|. .||.+.|.|. -..|
T Consensus 452 ~lITAvcy~Pd-Gk~avIGt~~G~C~fY~t~~lk~~~~~~I~~~~~K-----------k~~~~--rITG~Q~~p~~~~~v 517 (712)
T KOG0283|consen 452 DLITAVCYSPD-GKGAVIGTFNGYCRFYDTEGLKLVSDFHIRLHNKK-----------KKQGK--RITGLQFFPGDPDEV 517 (712)
T ss_pred hhheeEEeccC-CceEEEEEeccEEEEEEccCCeEEEeeeEeeccCc-----------cccCc--eeeeeEecCCCCCeE
Confidence 57999999995 89999999999999999998765443322111110 01111 5999999984 4479
Q ss_pred EEEeCCCcEEEEECCC
Q 004477 295 LLSYSGEHVYLMDVNH 310 (751)
Q Consensus 295 l~~s~d~~I~lwdl~~ 310 (751)
++.+.|..|+|||+++
T Consensus 518 LVTSnDSrIRI~d~~~ 533 (712)
T KOG0283|consen 518 LVTSNDSRIRIYDGRD 533 (712)
T ss_pred EEecCCCceEEEeccc
Confidence 9999999999999766
No 25
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=99.98 E-value=1.9e-31 Score=288.55 Aligned_cols=210 Identities=22% Similarity=0.345 Sum_probs=190.7
Q ss_pred cccEEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEecccCCcceEEEEEecCCCCcEEEEEECCCcEE
Q 004477 41 SQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVR 120 (751)
Q Consensus 41 ~~~~~L~gH~~~V~~l~~s~dg~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~Dg~V~ 120 (751)
...++|.||.|+|..+.|+|+.++|+|+|.|++|++|.+.+..++..+ .||..+|++|.|+|. |-+|||||.|++.+
T Consensus 442 ~~~~~L~GH~GPVyg~sFsPd~rfLlScSED~svRLWsl~t~s~~V~y-~GH~~PVwdV~F~P~--GyYFatas~D~tAr 518 (707)
T KOG0263|consen 442 GTSRTLYGHSGPVYGCSFSPDRRFLLSCSEDSSVRLWSLDTWSCLVIY-KGHLAPVWDVQFAPR--GYYFATASHDQTAR 518 (707)
T ss_pred ceeEEeecCCCceeeeeecccccceeeccCCcceeeeecccceeEEEe-cCCCcceeeEEecCC--ceEEEecCCCceee
Confidence 345679999999999999999999999999999999999999999888 799999999999999 89999999999999
Q ss_pred EEECCCCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCCCCCCCCCCccceEEEec
Q 004477 121 LFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDL 200 (751)
Q Consensus 121 vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~~~~~~~~~~~~l~~~ 200 (751)
+|..... .|++.+.+|-.-|.|+.|+| +..++++||.|.+||+||+.++..
T Consensus 519 LWs~d~~----------~PlRifaghlsDV~cv~FHP-Ns~Y~aTGSsD~tVRlWDv~~G~~------------------ 569 (707)
T KOG0263|consen 519 LWSTDHN----------KPLRIFAGHLSDVDCVSFHP-NSNYVATGSSDRTVRLWDVSTGNS------------------ 569 (707)
T ss_pred eeecccC----------CchhhhcccccccceEEECC-cccccccCCCCceEEEEEcCCCcE------------------
Confidence 9999874 78999999999999999999 889999999999999999999863
Q ss_pred ccCceecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCccccCCCCCCCCccccccccccccCCcccc
Q 004477 201 RCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSL 280 (751)
Q Consensus 201 ~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 280 (751)
+..+.+|..+|.+++|+| ++++|++|+.|+.|++||+.+++.+..+ .+|.+
T Consensus 570 -------VRiF~GH~~~V~al~~Sp-~Gr~LaSg~ed~~I~iWDl~~~~~v~~l--------------------~~Ht~- 620 (707)
T KOG0263|consen 570 -------VRIFTGHKGPVTALAFSP-CGRYLASGDEDGLIKIWDLANGSLVKQL--------------------KGHTG- 620 (707)
T ss_pred -------EEEecCCCCceEEEEEcC-CCceEeecccCCcEEEEEcCCCcchhhh--------------------hcccC-
Confidence 222345889999999999 5899999999999999999988765443 45644
Q ss_pred ceEEEEEcCCCCEEEEEeCCCcEEEEECCCC
Q 004477 281 HLTHVTFSPNGEEVLLSYSGEHVYLMDVNHA 311 (751)
Q Consensus 281 ~vt~v~fspdg~~Ll~~s~d~~I~lwdl~~~ 311 (751)
.|+++.||.||..|++++.|++|++||+...
T Consensus 621 ti~SlsFS~dg~vLasgg~DnsV~lWD~~~~ 651 (707)
T KOG0263|consen 621 TIYSLSFSRDGNVLASGGADNSVRLWDLTKV 651 (707)
T ss_pred ceeEEEEecCCCEEEecCCCCeEEEEEchhh
Confidence 6999999999999999999999999999874
No 26
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=99.97 E-value=2.3e-29 Score=261.09 Aligned_cols=207 Identities=27% Similarity=0.420 Sum_probs=173.0
Q ss_pred cEEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEecccCCcceEEEEEecCCCCcEEEEEECCCcEEEE
Q 004477 43 ERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLF 122 (751)
Q Consensus 43 ~~~L~gH~~~V~~l~~s~dg~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~Dg~V~vw 122 (751)
.++|++|.+.|++++|+|++++|++++.||.|++|++.++.....+ ..|...+..+.|+|+ +++|++++.|+.|++|
T Consensus 2 ~~~~~~h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~-~~~~~~i~~~~~~~~--~~~l~~~~~~~~i~i~ 78 (289)
T cd00200 2 RRTLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTL-KGHTGPVRDVAASAD--GTYLASGSSDKTIRLW 78 (289)
T ss_pred chHhcccCCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCCcEEEE-ecCCcceeEEEECCC--CCEEEEEcCCCeEEEE
Confidence 4567899999999999999999999999999999999988877777 789999999999999 6899999999999999
Q ss_pred ECCCCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCCCCCCCCCCccceEEEeccc
Q 004477 123 NLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRC 202 (751)
Q Consensus 123 d~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~~~~~~~~~~~~l~~~~~ 202 (751)
|+... +.+..+..|...|.++.|++ ++.++++++.||.|++||+++.+..
T Consensus 79 ~~~~~----------~~~~~~~~~~~~i~~~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~------------------- 128 (289)
T cd00200 79 DLETG----------ECVRTLTGHTSYVSSVAFSP-DGRILSSSSRDKTIKVWDVETGKCL------------------- 128 (289)
T ss_pred EcCcc----------cceEEEeccCCcEEEEEEcC-CCCEEEEecCCCeEEEEECCCcEEE-------------------
Confidence 99863 34677788999999999999 4678888888999999999865421
Q ss_pred CceecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCccccCCCCCCCCccccccccccccCCccccce
Q 004477 203 GAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHL 282 (751)
Q Consensus 203 ~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v 282 (751)
.....+...+.+++|+|+ +.++++++.|+.|++||++..+....+ ..|.. .+
T Consensus 129 ------~~~~~~~~~i~~~~~~~~-~~~l~~~~~~~~i~i~d~~~~~~~~~~--------------------~~~~~-~i 180 (289)
T cd00200 129 ------TTLRGHTDWVNSVAFSPD-GTFVASSSQDGTIKLWDLRTGKCVATL--------------------TGHTG-EV 180 (289)
T ss_pred ------EEeccCCCcEEEEEEcCc-CCEEEEEcCCCcEEEEEccccccceeE--------------------ecCcc-cc
Confidence 011125567999999995 678888888999999999865543222 11222 58
Q ss_pred EEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 004477 283 THVTFSPNGEEVLLSYSGEHVYLMDVNH 310 (751)
Q Consensus 283 t~v~fspdg~~Ll~~s~d~~I~lwdl~~ 310 (751)
+++.|+|+++.|++++.++.|++||+..
T Consensus 181 ~~~~~~~~~~~l~~~~~~~~i~i~d~~~ 208 (289)
T cd00200 181 NSVAFSPDGEKLLSSSSDGTIKLWDLST 208 (289)
T ss_pred ceEEECCCcCEEEEecCCCcEEEEECCC
Confidence 9999999999999999999999999876
No 27
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=99.97 E-value=1.7e-30 Score=281.25 Aligned_cols=208 Identities=21% Similarity=0.322 Sum_probs=177.5
Q ss_pred cEEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCe-------------------------------EEEEeccc
Q 004477 43 ERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRK-------------------------------LLHSIETG 91 (751)
Q Consensus 43 ~~~L~gH~~~V~~l~~s~dg~~LaSgs~Dg~I~IWd~~~~~-------------------------------~~~~l~~~ 91 (751)
..++..-...|+|..|++|+++||.|-.|..|++|.+...+ ...++ .|
T Consensus 371 ~YT~~nt~~~v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~L-~G 449 (707)
T KOG0263|consen 371 MYTFHNTYQGVTCAEFSDDSSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRTL-YG 449 (707)
T ss_pred EEEEEEcCCcceeEeecCCcchhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeEEe-ec
Confidence 34444445679999999999999999999999999876311 11223 69
Q ss_pred CCcceEEEEEecCCCCcEEEEEECCCcEEEEECCCCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCCc
Q 004477 92 HSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGT 171 (751)
Q Consensus 92 h~~~V~~v~fsp~s~~~~l~sgs~Dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~ 171 (751)
|.++|+.+.|+|+ .++|++||.|++||+|.+.+. .++..+++|..+|+.+.|+| -|.+|+|+|.|++
T Consensus 450 H~GPVyg~sFsPd--~rfLlScSED~svRLWsl~t~----------s~~V~y~GH~~PVwdV~F~P-~GyYFatas~D~t 516 (707)
T KOG0263|consen 450 HSGPVYGCSFSPD--RRFLLSCSEDSSVRLWSLDTW----------SCLVIYKGHLAPVWDVQFAP-RGYYFATASHDQT 516 (707)
T ss_pred CCCceeeeeeccc--ccceeeccCCcceeeeecccc----------eeEEEecCCCcceeeEEecC-CceEEEecCCCce
Confidence 9999999999999 799999999999999999975 55788899999999999999 6799999999999
Q ss_pred EEEEecCCCCCCCCCCCCCCccceEEEecccCceecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCc
Q 004477 172 LRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPL 251 (751)
Q Consensus 172 I~iwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~ 251 (751)
.++|......+. ..+.+|...|.|+.|+|+ ..|+++|+.|.+||+||..++.
T Consensus 517 ArLWs~d~~~Pl-------------------------RifaghlsDV~cv~FHPN-s~Y~aTGSsD~tVRlWDv~~G~-- 568 (707)
T KOG0263|consen 517 ARLWSTDHNKPL-------------------------RIFAGHLSDVDCVSFHPN-SNYVATGSSDRTVRLWDVSTGN-- 568 (707)
T ss_pred eeeeecccCCch-------------------------hhhcccccccceEEECCc-ccccccCCCCceEEEEEcCCCc--
Confidence 999998775532 333457889999999994 8999999999999999999875
Q ss_pred cccCCCCCCCCccccccccccccCCccccceEEEEEcCCCCEEEEEeCCCcEEEEECCCC
Q 004477 252 TSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHA 311 (751)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~vt~v~fspdg~~Ll~~s~d~~I~lwdl~~~ 311 (751)
+++.| .||.. +|++++|||+|++|++|+.|+.|.|||+.++
T Consensus 569 -----------~VRiF-------~GH~~-~V~al~~Sp~Gr~LaSg~ed~~I~iWDl~~~ 609 (707)
T KOG0263|consen 569 -----------SVRIF-------TGHKG-PVTALAFSPCGRYLASGDEDGLIKIWDLANG 609 (707)
T ss_pred -----------EEEEe-------cCCCC-ceEEEEEcCCCceEeecccCCcEEEEEcCCC
Confidence 34555 56766 7999999999999999999999999998873
No 28
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=99.97 E-value=1.1e-30 Score=256.35 Aligned_cols=195 Identities=17% Similarity=0.338 Sum_probs=162.5
Q ss_pred CCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEecccCCcceEEEEEecCCCCcEEEEEECCCcEEEEECCCCC
Q 004477 49 HQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFS 128 (751)
Q Consensus 49 H~~~V~~l~~s~dg~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~Dg~V~vwd~~~~~ 128 (751)
....|.|+++. ...++||..|.+|+|||..+..++..+ .||++.|.|+.|. .+.|+|||.|.+|+|||++++
T Consensus 196 ~skgVYClQYD--D~kiVSGlrDnTikiWD~n~~~c~~~L-~GHtGSVLCLqyd----~rviisGSSDsTvrvWDv~tg- 267 (499)
T KOG0281|consen 196 NSKGVYCLQYD--DEKIVSGLRDNTIKIWDKNSLECLKIL-TGHTGSVLCLQYD----ERVIVSGSSDSTVRVWDVNTG- 267 (499)
T ss_pred cCCceEEEEec--chhhhcccccCceEEeccccHHHHHhh-hcCCCcEEeeecc----ceEEEecCCCceEEEEeccCC-
Confidence 45789999985 457999999999999999998888888 8999999999997 469999999999999999976
Q ss_pred CCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCCCCCCCCCCccceEEEecccCceecc
Q 004477 129 GRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSL 208 (751)
Q Consensus 129 ~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 208 (751)
+++.++-.|...|..+.|+. .+++++|.|.+|.+||+..+... .+..
T Consensus 268 ---------e~l~tlihHceaVLhlrf~n---g~mvtcSkDrsiaVWdm~sps~i--------t~rr------------- 314 (499)
T KOG0281|consen 268 ---------EPLNTLIHHCEAVLHLRFSN---GYMVTCSKDRSIAVWDMASPTDI--------TLRR------------- 314 (499)
T ss_pred ---------chhhHHhhhcceeEEEEEeC---CEEEEecCCceeEEEeccCchHH--------HHHH-------------
Confidence 77999999999999999974 58889999999999999876421 1112
Q ss_pred cCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCccccCCCCCCCCccccccccccccCCccccceEEEEEc
Q 004477 209 ADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFS 288 (751)
Q Consensus 209 ~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~vt~v~fs 288 (751)
...+|...|+.+.|+. ++|++++.|.+|++|++.+...+..+ .||.. .|.++.+
T Consensus 315 -VLvGHrAaVNvVdfd~---kyIVsASgDRTikvW~~st~efvRtl--------------------~gHkR-GIAClQY- 368 (499)
T KOG0281|consen 315 -VLVGHRAAVNVVDFDD---KYIVSASGDRTIKVWSTSTCEFVRTL--------------------NGHKR-GIACLQY- 368 (499)
T ss_pred -HHhhhhhheeeecccc---ceEEEecCCceEEEEeccceeeehhh--------------------hcccc-cceehhc-
Confidence 2234788999999964 69999999999999999987644433 45554 3655444
Q ss_pred CCCCEEEEEeCCCcEEEEECCCC
Q 004477 289 PNGEEVLLSYSGEHVYLMDVNHA 311 (751)
Q Consensus 289 pdg~~Ll~~s~d~~I~lwdl~~~ 311 (751)
.|+++++|++|.+|+|||+..+
T Consensus 369 -r~rlvVSGSSDntIRlwdi~~G 390 (499)
T KOG0281|consen 369 -RDRLVVSGSSDNTIRLWDIECG 390 (499)
T ss_pred -cCeEEEecCCCceEEEEecccc
Confidence 6889999999999999998874
No 29
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=5.8e-30 Score=268.50 Aligned_cols=213 Identities=15% Similarity=0.325 Sum_probs=184.4
Q ss_pred cccccEEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEecccCCcceEEEEEecCCCCcEEEEEECCCc
Q 004477 39 RLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAE 118 (751)
Q Consensus 39 ~~~~~~~L~gH~~~V~~l~~s~dg~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~Dg~ 118 (751)
+++..++|..|+..|.++.|+|....++++-..|.|.|||.++...+..+ .-..-+|.+.+|.+. -+.+++|+.|..
T Consensus 2 ~l~~krk~~~rSdRVKsVd~HPtePw~la~LynG~V~IWnyetqtmVksf-eV~~~PvRa~kfiaR--knWiv~GsDD~~ 78 (794)
T KOG0276|consen 2 KLDFKRKFQSRSDRVKSVDFHPTEPWILAALYNGDVQIWNYETQTMVKSF-EVSEVPVRAAKFIAR--KNWIVTGSDDMQ 78 (794)
T ss_pred cchhhhHhhccCCceeeeecCCCCceEEEeeecCeeEEEecccceeeeee-eecccchhhheeeec--cceEEEecCCce
Confidence 34556677789999999999999999999999999999999999999998 667789999999998 689999999999
Q ss_pred EEEEECCCCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCCCCCCCCCCccceEEE
Q 004477 119 VRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILL 198 (751)
Q Consensus 119 V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~~~~~~~~~~~~l~ 198 (751)
|+||+..+. +.++.|..|.+.|++|+.+|+.+ +++|+|.|-+|++||....=.|
T Consensus 79 IrVfnynt~----------ekV~~FeAH~DyIR~iavHPt~P-~vLtsSDDm~iKlW~we~~wa~--------------- 132 (794)
T KOG0276|consen 79 IRVFNYNTG----------EKVKTFEAHSDYIRSIAVHPTLP-YVLTSSDDMTIKLWDWENEWAC--------------- 132 (794)
T ss_pred EEEEecccc----------eeeEEeeccccceeeeeecCCCC-eEEecCCccEEEEeeccCceee---------------
Confidence 999999975 66999999999999999999765 6669999999999999875433
Q ss_pred ecccCceecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCccccCCCCCCCCccccccccccccCCcc
Q 004477 199 DLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRS 278 (751)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 278 (751)
...+.+|...|.+++|+|.|++.+++++-|++|+||.+....+..++ .||.
T Consensus 133 ---------~qtfeGH~HyVMqv~fnPkD~ntFaS~sLDrTVKVWslgs~~~nfTl--------------------~gHe 183 (794)
T KOG0276|consen 133 ---------EQTFEGHEHYVMQVAFNPKDPNTFASASLDRTVKVWSLGSPHPNFTL--------------------EGHE 183 (794)
T ss_pred ---------eeEEcCcceEEEEEEecCCCccceeeeeccccEEEEEcCCCCCceee--------------------eccc
Confidence 23345588899999999999999999999999999999865543332 4565
Q ss_pred ccceEEEEEcCCC--CEEEEEeCCCcEEEEECCC
Q 004477 279 SLHLTHVTFSPNG--EEVLLSYSGEHVYLMDVNH 310 (751)
Q Consensus 279 ~~~vt~v~fspdg--~~Ll~~s~d~~I~lwdl~~ 310 (751)
. .|++|.|-+-| .+|++|+.|..|+|||.++
T Consensus 184 k-GVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQt 216 (794)
T KOG0276|consen 184 K-GVNCVDYYTGGDKPYLISGADDLTIKVWDYQT 216 (794)
T ss_pred c-CcceEEeccCCCcceEEecCCCceEEEeecch
Confidence 5 49999998855 6999999999999999777
No 30
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=99.97 E-value=7.5e-29 Score=234.13 Aligned_cols=230 Identities=15% Similarity=0.262 Sum_probs=186.5
Q ss_pred CcccccccccchhhhccccccEEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCe--EEEEecccCCcceEEEE
Q 004477 23 RPDVNHSLQMHSSLVRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRK--LLHSIETGHSANVFCTK 100 (751)
Q Consensus 23 ~~~~~~~l~~~~~~i~~~~~~~~L~gH~~~V~~l~~s~dg~~LaSgs~Dg~I~IWd~~~~~--~~~~l~~~h~~~V~~v~ 100 (751)
+..+++++++|.. .+..+.++++--.+.||.|...|+++.||+|+. ..|++||+.++. ++.++ .+|+.+|.+|.
T Consensus 15 sA~YDhTIRfWqa--~tG~C~rTiqh~dsqVNrLeiTpdk~~LAaa~~-qhvRlyD~~S~np~Pv~t~-e~h~kNVtaVg 90 (311)
T KOG0315|consen 15 SAGYDHTIRFWQA--LTGICSRTIQHPDSQVNRLEITPDKKDLAAAGN-QHVRLYDLNSNNPNPVATF-EGHTKNVTAVG 90 (311)
T ss_pred eccCcceeeeeeh--hcCeEEEEEecCccceeeEEEcCCcchhhhccC-CeeEEEEccCCCCCceeEE-eccCCceEEEE
Confidence 4578899999984 566799999988889999999999999999986 589999998765 57777 79999999999
Q ss_pred EecCCCCcEEEEEECCCcEEEEECCCCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCC
Q 004477 101 FVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQG 180 (751)
Q Consensus 101 fsp~s~~~~l~sgs~Dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~ 180 (751)
|.-+ |+.++|||.||+++|||++.. .+.+ ...|..+|+++..+| +..-|++|..+|.|++||++..
T Consensus 91 F~~d--grWMyTgseDgt~kIWdlR~~----------~~qR-~~~~~spVn~vvlhp-nQteLis~dqsg~irvWDl~~~ 156 (311)
T KOG0315|consen 91 FQCD--GRWMYTGSEDGTVKIWDLRSL----------SCQR-NYQHNSPVNTVVLHP-NQTELISGDQSGNIRVWDLGEN 156 (311)
T ss_pred Eeec--CeEEEecCCCceEEEEeccCc----------ccch-hccCCCCcceEEecC-CcceEEeecCCCcEEEEEccCC
Confidence 9999 899999999999999999964 2233 334789999999999 6667779999999999999987
Q ss_pred CCCCCCCCCCCccceEEEecccCceecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCccccCCCCCC
Q 004477 181 SSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSP 260 (751)
Q Consensus 181 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~~~~~~~~~~ 260 (751)
..... ..|.....|.++.+.| ++.+++.+.+-|..++|++-.......
T Consensus 157 ~c~~~------------------------liPe~~~~i~sl~v~~-dgsml~a~nnkG~cyvW~l~~~~~~s~------- 204 (311)
T KOG0315|consen 157 SCTHE------------------------LIPEDDTSIQSLTVMP-DGSMLAAANNKGNCYVWRLLNHQTASE------- 204 (311)
T ss_pred ccccc------------------------cCCCCCcceeeEEEcC-CCcEEEEecCCccEEEEEccCCCcccc-------
Confidence 53211 1223456899999999 589999999999999999876432222
Q ss_pred CCccccccccccccCCccccceEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 004477 261 PPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNH 310 (751)
Q Consensus 261 ~~~~~~~~~~~~~~~g~~~~~vt~v~fspdg~~Ll~~s~d~~I~lwdl~~ 310 (751)
+.|.+.. ..|.. .+..+.+|||+++|++++.|.+++||++++
T Consensus 205 ------l~P~~k~-~ah~~-~il~C~lSPd~k~lat~ssdktv~iwn~~~ 246 (311)
T KOG0315|consen 205 ------LEPVHKF-QAHNG-HILRCLLSPDVKYLATCSSDKTVKIWNTDD 246 (311)
T ss_pred ------ceEhhhe-ecccc-eEEEEEECCCCcEEEeecCCceEEEEecCC
Confidence 1122211 23444 599999999999999999999999999877
No 31
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=99.97 E-value=7.9e-29 Score=237.97 Aligned_cols=225 Identities=19% Similarity=0.256 Sum_probs=186.0
Q ss_pred ccccccccch---hhhccccccEEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEecccCCcceEEEEE
Q 004477 25 DVNHSLQMHS---SLVRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKF 101 (751)
Q Consensus 25 ~~~~~l~~~~---~~i~~~~~~~~L~gH~~~V~~l~~s~dg~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~V~~v~f 101 (751)
.-++.+-.|+ +......+++.|+||...|+.+..++||++.+|+|.|+++++||+.+++..+.| .||...|.+++|
T Consensus 35 srDk~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~s~dg~~alS~swD~~lrlWDl~~g~~t~~f-~GH~~dVlsva~ 113 (315)
T KOG0279|consen 35 SRDKTIIVWKLTSDDIKYGVPVRRLTGHSHFVSDVVLSSDGNFALSASWDGTLRLWDLATGESTRRF-VGHTKDVLSVAF 113 (315)
T ss_pred ccceEEEEEEeccCccccCceeeeeeccceEecceEEccCCceEEeccccceEEEEEecCCcEEEEE-EecCCceEEEEe
Confidence 3344444443 345556779999999999999999999999999999999999999999998888 899999999999
Q ss_pred ecCCCCcEEEEEECCCcEEEEECCCCCCCCCCCCCCCCceeeccc--CCceeEEEEecCC-CCEEEEEeCCCcEEEEecC
Q 004477 102 VPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCH--TRRVKKLAVEVGN-PHVVWSASEDGTLRQHDFR 178 (751)
Q Consensus 102 sp~s~~~~l~sgs~Dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h--~~~V~~l~~sp~~-~~~l~s~s~Dg~I~iwDlr 178 (751)
+|+ +..|+||+.|.+|++|++.. .+..++..+ ++.|.++.|+|.. ..+|+++|.|++|++||++
T Consensus 114 s~d--n~qivSGSrDkTiklwnt~g-----------~ck~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~ 180 (315)
T KOG0279|consen 114 STD--NRQIVSGSRDKTIKLWNTLG-----------VCKYTIHEDSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLR 180 (315)
T ss_pred cCC--CceeecCCCcceeeeeeecc-----------cEEEEEecCCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccC
Confidence 999 79999999999999999985 334555443 7899999999953 4689999999999999999
Q ss_pred CCCCCCCCCCCCCccceEEEecccCceecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCccccCCCC
Q 004477 179 QGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRM 258 (751)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~~~~~~~~ 258 (751)
+.+. ...+++|...++.++++| |+.++++|+.||.+.+||++..+.+.++.
T Consensus 181 ~~~l-------------------------~~~~~gh~~~v~t~~vSp-DGslcasGgkdg~~~LwdL~~~k~lysl~--- 231 (315)
T KOG0279|consen 181 NCQL-------------------------RTTFIGHSGYVNTVTVSP-DGSLCASGGKDGEAMLWDLNEGKNLYSLE--- 231 (315)
T ss_pred Ccch-------------------------hhccccccccEEEEEECC-CCCEEecCCCCceEEEEEccCCceeEecc---
Confidence 8762 234456888999999999 58999999999999999999876543321
Q ss_pred CCCCccccccccccccCCccccceEEEEEcCCCCEEEEEeCCCcEEEEECCCCC
Q 004477 259 SPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAG 312 (751)
Q Consensus 259 ~~~~~~~~~~~~~~~~~g~~~~~vt~v~fspdg~~Ll~~s~d~~I~lwdl~~~~ 312 (751)
+.. .|.+++|+|+.-.|+.+. +..|+|||+.++.
T Consensus 232 ------------------a~~-~v~sl~fspnrywL~~at-~~sIkIwdl~~~~ 265 (315)
T KOG0279|consen 232 ------------------AFD-IVNSLCFSPNRYWLCAAT-ATSIKIWDLESKA 265 (315)
T ss_pred ------------------CCC-eEeeEEecCCceeEeecc-CCceEEEeccchh
Confidence 222 599999999976666554 4569999999854
No 32
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.97 E-value=6.3e-28 Score=258.41 Aligned_cols=248 Identities=19% Similarity=0.295 Sum_probs=207.1
Q ss_pred hccccccEEeccCCCcEEEEEECCCCCEEEEEeCC-CcEEEEeCCCCeEEEEecccCCcceEEEEEecCCCCcEEEEEEC
Q 004477 37 VRRLSQERELEGHQGCVNAISWNSKGSLLISGSDD-THINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAG 115 (751)
Q Consensus 37 i~~~~~~~~L~gH~~~V~~l~~s~dg~~LaSgs~D-g~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~ 115 (751)
+..+.++|.|.--...|..+.|+..|..||-|+.. |.+-||+..+...+... ++|...|++++++|+ |++||||+.
T Consensus 294 lP~f~lih~LSis~~~I~t~~~N~tGDWiA~g~~klgQLlVweWqsEsYVlKQ-QgH~~~i~~l~YSpD--gq~iaTG~e 370 (893)
T KOG0291|consen 294 LPDFNLIHSLSISDQKILTVSFNSTGDWIAFGCSKLGQLLVWEWQSESYVLKQ-QGHSDRITSLAYSPD--GQLIATGAE 370 (893)
T ss_pred cCCceEEEEeecccceeeEEEecccCCEEEEcCCccceEEEEEeeccceeeec-cccccceeeEEECCC--CcEEEeccC
Confidence 45567788888777899999999999999998754 89999999988888777 899999999999999 899999999
Q ss_pred CCcEEEEECCCCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCCCCCCCCCCccce
Q 004477 116 DAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRN 195 (751)
Q Consensus 116 Dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~~~~~~~~~~~ 195 (751)
||.|+|||...+ -|+.+|..|+..|+.+.|+. .++.++|.+.||+||.||+......+...
T Consensus 371 DgKVKvWn~~Sg----------fC~vTFteHts~Vt~v~f~~-~g~~llssSLDGtVRAwDlkRYrNfRTft-------- 431 (893)
T KOG0291|consen 371 DGKVKVWNTQSG----------FCFVTFTEHTSGVTAVQFTA-RGNVLLSSSLDGTVRAWDLKRYRNFRTFT-------- 431 (893)
T ss_pred CCcEEEEeccCc----------eEEEEeccCCCceEEEEEEe-cCCEEEEeecCCeEEeeeecccceeeeec--------
Confidence 999999999964 56899999999999999999 77899999999999999998765321110
Q ss_pred EEEecccCceecccCCCCCccceEEEEEeCCCCcEEEEEeCCC-eEEEEeCCCCCCccccCCCCCCCCcccccccccccc
Q 004477 196 ILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDA-FARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSE 274 (751)
Q Consensus 196 ~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~-~IriwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (751)
. .......|++..|. +.++.+|+.|. .|.+|++.+++.+..+
T Consensus 432 ---------------~-P~p~QfscvavD~s-GelV~AG~~d~F~IfvWS~qTGqllDiL-------------------- 474 (893)
T KOG0291|consen 432 ---------------S-PEPIQFSCVAVDPS-GELVCAGAQDSFEIFVWSVQTGQLLDIL-------------------- 474 (893)
T ss_pred ---------------C-CCceeeeEEEEcCC-CCEEEeeccceEEEEEEEeecCeeeehh--------------------
Confidence 0 13456789999995 78888899887 5899999998865443
Q ss_pred CCccccceEEEEEcCCCCEEEEEeCCCcEEEEECCCCCcceeeeecCCCceeEEeCCCCCCcccCCCccc
Q 004477 275 HGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVGDASKIMSFTPTLNGLELQPPIHD 344 (751)
Q Consensus 275 ~g~~~~~vt~v~fspdg~~Ll~~s~d~~I~lwdl~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~~~~~ 344 (751)
.||.+ +|.+++|+|+|..|++++-|.+|++||+-......-.....+-...++|+|++..++.+..++.
T Consensus 475 sGHEg-PVs~l~f~~~~~~LaS~SWDkTVRiW~if~s~~~vEtl~i~sdvl~vsfrPdG~elaVaTldgq 543 (893)
T KOG0291|consen 475 SGHEG-PVSGLSFSPDGSLLASGSWDKTVRIWDIFSSSGTVETLEIRSDVLAVSFRPDGKELAVATLDGQ 543 (893)
T ss_pred cCCCC-cceeeEEccccCeEEeccccceEEEEEeeccCceeeeEeeccceeEEEEcCCCCeEEEEEecce
Confidence 56766 7999999999999999999999999999886544445555667778999999988877655443
No 33
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.97 E-value=7.9e-29 Score=265.14 Aligned_cols=447 Identities=19% Similarity=0.257 Sum_probs=315.4
Q ss_pred ccccccchhhhccccccEEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEecccCCcceEEEEEecCCC
Q 004477 27 NHSLQMHSSLVRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETS 106 (751)
Q Consensus 27 ~~~l~~~~~~i~~~~~~~~L~gH~~~V~~l~~s~dg~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~s~ 106 (751)
+..+++|+..-. ...-++.||+..|+++.|...|.+|||||.|+.|+|||+-...-+..+ .||+..|+..-|...
T Consensus 86 DGsVqif~~~s~--~~~~tfngHK~AVt~l~fd~~G~rlaSGskDt~IIvwDlV~E~Gl~rL-~GHkd~iT~~~F~~~-- 160 (888)
T KOG0306|consen 86 DGSVQIFSLESE--EILITFNGHKAAVTTLKFDKIGTRLASGSKDTDIIVWDLVGEEGLFRL-RGHKDSITQALFLNG-- 160 (888)
T ss_pred CceEEeeccCCC--ceeeeecccccceEEEEEcccCceEeecCCCccEEEEEeccceeeEEe-ecchHHHhHHhccCC--
Confidence 567788776544 677889999999999999999999999999999999999877777778 899999999999986
Q ss_pred CcEEEEEECCCcEEEEECCCCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCC-----
Q 004477 107 DELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGS----- 181 (751)
Q Consensus 107 ~~~l~sgs~Dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~----- 181 (751)
+++|++++.|+.|++||+.+. .+..+...|.+.|+.+++.+ +.+++++.|+.+++|++....
T Consensus 161 ~~~lvS~sKDs~iK~WdL~tq----------hCf~Thvd~r~Eiw~l~~~~---~~lvt~~~dse~~v~~L~~~~D~~~~ 227 (888)
T KOG0306|consen 161 DSFLVSVSKDSMIKFWDLETQ----------HCFETHVDHRGEIWALVLDE---KLLVTAGTDSELKVWELAFEDDEKET 227 (888)
T ss_pred CeEEEEeccCceEEEEecccc----------eeeeEEecccceEEEEEEec---ceEEEEecCCceEEEEeecccccccc
Confidence 689999999999999999975 56788889999999999976 688899999999999992110
Q ss_pred -------------------CC-------------C------------------------------CCCC-----------
Q 004477 182 -------------------SC-------------P------------------------------PAGS----------- 188 (751)
Q Consensus 182 -------------------~~-------------~------------------------------~~~~----------- 188 (751)
.. . ....
T Consensus 228 ~~~~s~~~~G~~~rqsk~R~i~l~~d~s~r~~~c~g~d~~~e~frI~s~~E~~k~l~Kk~k~~Kkka~t~e~~~~v~~sl 307 (888)
T KOG0306|consen 228 NRYISTKLRGTFIRQSKGREINLVTDFSDRFLVCQGADKVIELFRIRSKEEIAKILSKKLKRAKKKAETEENEDDVEKSL 307 (888)
T ss_pred cccceeeccceeeeccCCceeEEeecCcccEEEEecchhhhhheeecCHHHHHHHHHHHHHHhhhhccccccccchhhhH
Confidence 00 0 0000
Q ss_pred ----------------------CCCccceEEEecccCce-----------------ecccCCCCCccceEEEEEeCCCCc
Q 004477 189 ----------------------SHQECRNILLDLRCGAK-----------------RSLADPPKQTLSLKSCDISSTRPH 229 (751)
Q Consensus 189 ----------------------~~~~~~~~l~~~~~~~~-----------------~~~~~~~~~~~~v~~i~~sp~~~~ 229 (751)
......+.++.+..... ..-....+|...|.+++++.+ .
T Consensus 308 ~~~i~r~~~ir~~~kiks~dv~~~~~~~~~lv~l~nNtv~~ysl~~s~~~~p~~~~~~~i~~~GHR~dVRsl~vS~d-~- 385 (888)
T KOG0306|consen 308 SDEIKRLETIRTSAKIKSFDVTPSGGTENTLVLLANNTVEWYSLENSGKTSPEADRTSNIEIGGHRSDVRSLCVSSD-S- 385 (888)
T ss_pred HHHHHHHHheechhheeEEEEEecCCcceeEEEeecCceEEEEeccCCCCCccccccceeeeccchhheeEEEeecC-c-
Confidence 00000001111111000 000223568888999999984 3
Q ss_pred EEEEEeCCCeEEEEeCCCCCCccccCCCCCCCCccccccccccccCCccccceEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 004477 230 LLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVN 309 (751)
Q Consensus 230 ~l~sgs~D~~IriwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~vt~v~fspdg~~Ll~~s~d~~I~lwdl~ 309 (751)
.++..+..+.|+||++.+.+.+.++. .. .+.+..|-|.++++++|+..|.+.+||+.
T Consensus 386 ~~~~Sga~~SikiWn~~t~kciRTi~----------------------~~-y~l~~~Fvpgd~~Iv~G~k~Gel~vfdla 442 (888)
T KOG0306|consen 386 ILLASGAGESIKIWNRDTLKCIRTIT----------------------CG-YILASKFVPGDRYIVLGTKNGELQVFDLA 442 (888)
T ss_pred eeeeecCCCcEEEEEccCcceeEEec----------------------cc-cEEEEEecCCCceEEEeccCCceEEEEee
Confidence 44444556789999999887554431 11 37889999999999999999999999999
Q ss_pred CCCcceeeeecCCCceeEEeCCCCCCcccCCCcccccccccccccccccCcchhHHHHHHHHHhhhcCCChhHHHHHhHH
Q 004477 310 HAGGRAMRYTVGDASKIMSFTPTLNGLELQPPIHDFLQTNIRVRGEVATGLGKCRMLVEIARNSLEEGKHPYYGIEACNE 389 (751)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~g~~~~~ai~~~~~ 389 (751)
..........|.+.+..++.+|+..+......+...-...+.+...+.....++..+.+ . ..++.-++
T Consensus 443 S~~l~Eti~AHdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~--------~----rtLel~dd 510 (888)
T KOG0306|consen 443 SASLVETIRAHDGAIWSISLSPDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKH--------T----RTLELEDD 510 (888)
T ss_pred hhhhhhhhhccccceeeeeecCCCCceEEecCCcEEEEEeEEEEeccCcccceeeeecc--------c----eEEecccc
Confidence 98777777788899999999999998877665544332222221000000000000000 0 00000000
Q ss_pred HHhcccCCCCCchhhhhHhHHHHHhhcccccchhhhHHHhhHHHhcCCCCCcchHHHHHHHHHHhcchHHHHHHHHHhcc
Q 004477 390 VLEGHLSGIGPMLRHECLCIRAALLLKRKWKNDAQMAIRDCYNARRIDSSSFRAHLYMSEALEQLCKYKEALDFAIAAQC 469 (751)
Q Consensus 390 ~i~~~~~~~~~~~~~~~~~~ra~~~~~r~w~~d~y~al~d~~~a~~~~~~~~~a~~~~~~~l~~l~~~~~a~~~~~~~~~ 469 (751)
++
T Consensus 511 vL------------------------------------------------------------------------------ 512 (888)
T KOG0306|consen 511 VL------------------------------------------------------------------------------ 512 (888)
T ss_pred EE------------------------------------------------------------------------------
Confidence 00
Q ss_pred cCCCChhhhHHHHHHHHHHHHHHhhhccCCCCCCCCCCCCCCcccc--ccc-h--hcccccCCCCCCCCCCCCCCCCchh
Q 004477 470 LDPSNSVMAEKVENIKKHIAAAETEKNNKANDGGARSEPRTGRVLS--LSD-I--IYRSEANSDASQDGPRSEREDSDYD 544 (751)
Q Consensus 470 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--l~~-~--~~~~~~~~~~~~~~~~~~~~~~~~~ 544 (751)
. ..-+.+++++. |.| . +|
T Consensus 513 --------------------~--------------v~~Spdgk~LaVsLLdnTVkVy----------------------- 535 (888)
T KOG0306|consen 513 --------------------C--------------VSVSPDGKLLAVSLLDNTVKVY----------------------- 535 (888)
T ss_pred --------------------E--------------EEEcCCCcEEEEEeccCeEEEE-----------------------
Confidence 0 00111122221 111 0 22
Q ss_pred hhhhhcccCCCCCCCCCccccccccCccceeecccCCCccccccCCCCCCCCCCCCCCCCCCCCccccccccceeecccc
Q 004477 545 EEVEVDFHTSVPGDEGRDVEANFLHGSLNVRIHRRGDSARETVDANGSSGSPSSSSQNDRIPYQPETVIDMKQRYVGHCN 624 (751)
Q Consensus 545 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~ 624 (751)
+=+.++|+.+.+| |.++...|+-.+|+ ....++|.....++|..+-+++.+.|-+|..
T Consensus 536 flDtlKFflsLYG-----------HkLPV~smDIS~DS-----------klivTgSADKnVKiWGLdFGDCHKS~fAHdD 593 (888)
T KOG0306|consen 536 FLDTLKFFLSLYG-----------HKLPVLSMDISPDS-----------KLIVTGSADKNVKIWGLDFGDCHKSFFAHDD 593 (888)
T ss_pred Eecceeeeeeecc-----------cccceeEEeccCCc-----------CeEEeccCCCceEEeccccchhhhhhhcccC
Confidence 2245678888887 67788888888874 2223346788899999999999999999999
Q ss_pred cceeeeEeeeccCCCCEEEEccCCCcEEEEecCC------------eeeeeeccCCCceEEEEecCCceEEecCCCC
Q 004477 625 VGTDIKQASFLGQRGDYIASGSDDGRWFIWEKQT------------VVNCVQCHPFDCVVATSGIDNTIKIWTPSAS 689 (751)
Q Consensus 625 ~~~~i~~~~~~~~~~~~v~sgs~dg~~~iW~~~~------------~v~~v~~~p~~~~las~~~d~~v~~W~~~~~ 689 (751)
++..++ |-|+..+..|.+.||.|+-||-.. .|+|++..|+|.+++|||.|++||+|....+
T Consensus 594 Svm~V~----F~P~~~~FFt~gKD~kvKqWDg~kFe~iq~L~~H~~ev~cLav~~~G~~vvs~shD~sIRlwE~tde 666 (888)
T KOG0306|consen 594 SVMSVQ----FLPKTHLFFTCGKDGKVKQWDGEKFEEIQKLDGHHSEVWCLAVSPNGSFVVSSSHDKSIRLWERTDE 666 (888)
T ss_pred ceeEEE----EcccceeEEEecCcceEEeechhhhhhheeeccchheeeeeEEcCCCCeEEeccCCceeEeeeccCc
Confidence 877554 588999999999999999998666 8999999999999999999999999998764
No 34
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=99.97 E-value=1.8e-28 Score=236.73 Aligned_cols=250 Identities=17% Similarity=0.291 Sum_probs=211.2
Q ss_pred cccccccchhhhccccccEEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCC------eEEEEecccCCcceEEE
Q 004477 26 VNHSLQMHSSLVRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSR------KLLHSIETGHSANVFCT 99 (751)
Q Consensus 26 ~~~~l~~~~~~i~~~~~~~~L~gH~~~V~~l~~s~dg~~LaSgs~Dg~I~IWd~~~~------~~~~~l~~~h~~~V~~v 99 (751)
-+.+|-+|+.+... .++-+.--..-|..++|+|.|+++|.|+-|....||++.+. .....+ .+|++.+.|+
T Consensus 75 qDGklIvWDs~Ttn--K~haipl~s~WVMtCA~sPSg~~VAcGGLdN~Csiy~ls~~d~~g~~~v~r~l-~gHtgylScC 151 (343)
T KOG0286|consen 75 QDGKLIVWDSFTTN--KVHAIPLPSSWVMTCAYSPSGNFVACGGLDNKCSIYPLSTRDAEGNVRVSREL-AGHTGYLSCC 151 (343)
T ss_pred cCCeEEEEEccccc--ceeEEecCceeEEEEEECCCCCeEEecCcCceeEEEecccccccccceeeeee-cCccceeEEE
Confidence 45667777766544 44555556778999999999999999999999999999854 233445 8999999999
Q ss_pred EEecCCCCcEEEEEECCCcEEEEECCCCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCC
Q 004477 100 KFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQ 179 (751)
Q Consensus 100 ~fsp~s~~~~l~sgs~Dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~ 179 (751)
.|.++ ..|+|+|.|.++.+||++++ +.+..|.+|.+-|.+++++|.+++.|+||+-|++.++||+|.
T Consensus 152 ~f~dD---~~ilT~SGD~TCalWDie~g----------~~~~~f~GH~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~ 218 (343)
T KOG0286|consen 152 RFLDD---NHILTGSGDMTCALWDIETG----------QQTQVFHGHTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRS 218 (343)
T ss_pred EEcCC---CceEecCCCceEEEEEcccc----------eEEEEecCCcccEEEEecCCCCCCeEEecccccceeeeeccC
Confidence 99987 68999999999999999976 558899999999999999998889999999999999999999
Q ss_pred CCCCCCCCCCCCccceEEEecccCceecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCccccCCCCC
Q 004477 180 GSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMS 259 (751)
Q Consensus 180 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~~~~~~~~~ 259 (751)
+.. +..+++|...|+++.|.|+ +.-|++|+.|+++|+||+|....+..++.
T Consensus 219 ~~c-------------------------~qtF~ghesDINsv~ffP~-G~afatGSDD~tcRlyDlRaD~~~a~ys~--- 269 (343)
T KOG0286|consen 219 GQC-------------------------VQTFEGHESDINSVRFFPS-GDAFATGSDDATCRLYDLRADQELAVYSH--- 269 (343)
T ss_pred cce-------------------------eEeecccccccceEEEccC-CCeeeecCCCceeEEEeecCCcEEeeecc---
Confidence 863 3445668999999999995 89999999999999999998765544321
Q ss_pred CCCccccccccccccCCccccceEEEEEcCCCCEEEEEeCCCcEEEEECCCCCcceeeeecCCCceeEEeCCCCCCc
Q 004477 260 PPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVGDASKIMSFTPTLNGL 336 (751)
Q Consensus 260 ~~~~~~~~~~~~~~~~g~~~~~vt~v~fspdg~~Ll~~s~d~~I~lwdl~~~~~~~~~~~~~~~~~~~~~sp~~~~~ 336 (751)
. ....+|++|+||..|++|++|+.|..+.+||.-.+.....+.+|...+..+..+|+.-.+
T Consensus 270 ----------~------~~~~gitSv~FS~SGRlLfagy~d~~c~vWDtlk~e~vg~L~GHeNRvScl~~s~DG~av 330 (343)
T KOG0286|consen 270 ----------D------SIICGITSVAFSKSGRLLFAGYDDFTCNVWDTLKGERVGVLAGHENRVSCLGVSPDGMAV 330 (343)
T ss_pred ----------C------cccCCceeEEEcccccEEEeeecCCceeEeeccccceEEEeeccCCeeEEEEECCCCcEE
Confidence 1 112369999999999999999999999999999988888888888888889999876544
No 35
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=99.97 E-value=2e-28 Score=250.01 Aligned_cols=226 Identities=16% Similarity=0.230 Sum_probs=173.5
Q ss_pred EEeccCCCcEEEEEECCCCC-EEEEEeCCCcEEEEeCCC--CeEEE--Eec---------ccCCcceEEEEEecCCCCcE
Q 004477 44 RELEGHQGCVNAISWNSKGS-LLISGSDDTHINVWSYSS--RKLLH--SIE---------TGHSANVFCTKFVPETSDEL 109 (751)
Q Consensus 44 ~~L~gH~~~V~~l~~s~dg~-~LaSgs~Dg~I~IWd~~~--~~~~~--~l~---------~~h~~~V~~v~fsp~s~~~~ 109 (751)
+.+. |+.+|.+.+|+|-.. +||+|+.|-+.++|++.. ..... .+. ......|++++|+.+ |.+
T Consensus 173 kvl~-~~~~V~~~~WnP~~~~llasg~~~s~ari~~l~e~~~~~~~q~~lrh~~~~~~~s~~~nkdVT~L~Wn~~--G~~ 249 (524)
T KOG0273|consen 173 KVLR-HESEVFICAWNPLRDGLLASGSGDSTARIWNLLENSNIGSTQLVLRHCIREGGKSVPSNKDVTSLDWNND--GTL 249 (524)
T ss_pred eecc-CCCceEEEecCchhhhhhhccCCccceeeeeehhhccccchhhhhhhhhhhhcccCCccCCcceEEecCC--CCe
Confidence 3445 999999999999766 999999999999999864 11111 110 112367999999998 899
Q ss_pred EEEEECCCcEEEEECCCCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCCCCCCCC
Q 004477 110 VVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSS 189 (751)
Q Consensus 110 l~sgs~Dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~~~~~ 189 (751)
||+|+.||.++||+... ..+.++..|+++|.++.|+. .+++|++++-||++.+||..++...+
T Consensus 250 LatG~~~G~~riw~~~G-----------~l~~tl~~HkgPI~slKWnk-~G~yilS~~vD~ttilwd~~~g~~~q----- 312 (524)
T KOG0273|consen 250 LATGSEDGEARIWNKDG-----------NLISTLGQHKGPIFSLKWNK-KGTYILSGGVDGTTILWDAHTGTVKQ----- 312 (524)
T ss_pred EEEeecCcEEEEEecCc-----------hhhhhhhccCCceEEEEEcC-CCCEEEeccCCccEEEEeccCceEEE-----
Confidence 99999999999999984 55889999999999999998 67899999999999999998775321
Q ss_pred CCccceEEEecccCceecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCccccCCCCCCCCccccccc
Q 004477 190 HQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCP 269 (751)
Q Consensus 190 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (751)
.+. -|..+.-.+.|-. ..-+++++.|+.|+||.+....|+.++
T Consensus 313 -------~f~-------------~~s~~~lDVdW~~--~~~F~ts~td~~i~V~kv~~~~P~~t~--------------- 355 (524)
T KOG0273|consen 313 -------QFE-------------FHSAPALDVDWQS--NDEFATSSTDGCIHVCKVGEDRPVKTF--------------- 355 (524)
T ss_pred -------eee-------------eccCCccceEEec--CceEeecCCCceEEEEEecCCCcceee---------------
Confidence 111 1233334566664 468999999999999998766554433
Q ss_pred cccccCCccccceEEEEEcCCCCEEEEEeCCCcEEEEECCCCCcceeeeecCCCceeEEeCCC
Q 004477 270 MHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVGDASKIMSFTPT 332 (751)
Q Consensus 270 ~~~~~~g~~~~~vt~v~fspdg~~Ll~~s~d~~I~lwdl~~~~~~~~~~~~~~~~~~~~~sp~ 332 (751)
.||.+ .|..+.|+|.|..|++++.|++++||++........+..+...+....|+|.
T Consensus 356 -----~GH~g-~V~alk~n~tg~LLaS~SdD~TlkiWs~~~~~~~~~l~~Hskei~t~~wsp~ 412 (524)
T KOG0273|consen 356 -----IGHHG-EVNALKWNPTGSLLASCSDDGTLKIWSMGQSNSVHDLQAHSKEIYTIKWSPT 412 (524)
T ss_pred -----ecccC-ceEEEEECCCCceEEEecCCCeeEeeecCCCcchhhhhhhccceeeEeecCC
Confidence 45655 6999999999999999999999999998886544444444444555555554
No 36
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.96 E-value=1.8e-29 Score=253.82 Aligned_cols=204 Identities=21% Similarity=0.306 Sum_probs=168.3
Q ss_pred ccEEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCe--EEEEecccCCcceEEEEEecCCCCcEEEEEECCCcE
Q 004477 42 QERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRK--LLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEV 119 (751)
Q Consensus 42 ~~~~L~gH~~~V~~l~~s~dg~~LaSgs~Dg~I~IWd~~~~~--~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~Dg~V 119 (751)
....|..|.+.|+.+.|-++...|++|+.|..|++|++..++ .+.++ .|..++|++++|-++ +..+++++.|+.+
T Consensus 167 ~~~~ld~h~gev~~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k~~~~~tL-aGs~g~it~~d~d~~--~~~~iAas~d~~~ 243 (459)
T KOG0288|consen 167 ALFVLDAHEGEVHDVEFLRNSDTLATGGSDRIIKLWNVLGEKSELISTL-AGSLGNITSIDFDSD--NKHVIAASNDKNL 243 (459)
T ss_pred hhhhhhccccccceeEEccCcchhhhcchhhhhhhhhcccchhhhhhhh-hccCCCcceeeecCC--CceEEeecCCCce
Confidence 345678899999999999999999999999999999988666 55566 788899999999999 7999999999999
Q ss_pred EEEECCCCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCCCCCCCCCCccceEEEe
Q 004477 120 RLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLD 199 (751)
Q Consensus 120 ~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~~~~~~~~~~~~l~~ 199 (751)
++|++... ....++.+|++.|+++.|.... ..+++|+.|.+|+.||+....+.....
T Consensus 244 r~Wnvd~~----------r~~~TLsGHtdkVt~ak~~~~~-~~vVsgs~DRtiK~WDl~k~~C~kt~l------------ 300 (459)
T KOG0288|consen 244 RLWNVDSL----------RLRHTLSGHTDKVTAAKFKLSH-SRVVSGSADRTIKLWDLQKAYCSKTVL------------ 300 (459)
T ss_pred eeeeccch----------hhhhhhcccccceeeehhhccc-cceeeccccchhhhhhhhhhheecccc------------
Confidence 99999964 5688999999999999998743 348899999999999999865331111
Q ss_pred cccCceecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCccccCCCCCCCCccccccccccccCCccc
Q 004477 200 LRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSS 279 (751)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 279 (751)
....+..|..+ ...+++|..|+.||+||+|...+..+.+ .+
T Consensus 301 --------------~~S~cnDI~~~---~~~~~SgH~DkkvRfwD~Rs~~~~~sv~----------------------~g 341 (459)
T KOG0288|consen 301 --------------PGSQCNDIVCS---ISDVISGHFDKKVRFWDIRSADKTRSVP----------------------LG 341 (459)
T ss_pred --------------ccccccceEec---ceeeeecccccceEEEeccCCceeeEee----------------------cC
Confidence 11234445554 3578999999999999999876554331 11
Q ss_pred cceEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 004477 280 LHLTHVTFSPNGEEVLLSYSGEHVYLMDVNH 310 (751)
Q Consensus 280 ~~vt~v~fspdg~~Ll~~s~d~~I~lwdl~~ 310 (751)
+.|+++..+++|..|++++.|.++.++|+.+
T Consensus 342 g~vtSl~ls~~g~~lLsssRDdtl~viDlRt 372 (459)
T KOG0288|consen 342 GRVTSLDLSMDGLELLSSSRDDTLKVIDLRT 372 (459)
T ss_pred cceeeEeeccCCeEEeeecCCCceeeeeccc
Confidence 2599999999999999999999999999988
No 37
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=99.96 E-value=9.8e-27 Score=240.46 Aligned_cols=249 Identities=14% Similarity=0.198 Sum_probs=175.2
Q ss_pred hccccccEEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCC-eEEEEecccCCcceEEEEEecCCCCcEEEEEEC
Q 004477 37 VRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSR-KLLHSIETGHSANVFCTKFVPETSDELVVSGAG 115 (751)
Q Consensus 37 i~~~~~~~~L~gH~~~V~~l~~s~dg~~LaSgs~Dg~I~IWd~~~~-~~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~ 115 (751)
+........+.+|...|+-..|+|.|.++|||...|+|+|||.... ..++.-.+.-.++|..++|.++ ++.|+..+.
T Consensus 46 i~~~~~~~iYtEH~~~vtVAkySPsG~yiASGD~sG~vRIWdtt~~~hiLKnef~v~aG~I~Di~Wd~d--s~RI~avGE 123 (603)
T KOG0318|consen 46 IDNPASVDIYTEHAHQVTVAKYSPSGFYIASGDVSGKVRIWDTTQKEHILKNEFQVLAGPIKDISWDFD--SKRIAAVGE 123 (603)
T ss_pred CCCccceeeeccccceeEEEEeCCCceEEeecCCcCcEEEEeccCcceeeeeeeeecccccccceeCCC--CcEEEEEec
Confidence 4555667788999999999999999999999999999999997652 2222211444556666666666 333333221
Q ss_pred --C--CcEEEEECCCCCCCCC-------------------------------CCCCCCCceeecccCCceeEEEEecCCC
Q 004477 116 --D--AEVRLFNLSRFSGRGL-------------------------------DDNAITPSALYQCHTRRVKKLAVEVGNP 160 (751)
Q Consensus 116 --D--g~V~vwd~~~~~~~~~-------------------------------~~~~~~~~~~~~~h~~~V~~l~~sp~~~ 160 (751)
+ |.+.+||-.+..+... ..+.++-..++..|...|+++.|+| ++
T Consensus 124 Grerfg~~F~~DSG~SvGei~GhSr~ins~~~KpsRPfRi~T~sdDn~v~ffeGPPFKFk~s~r~HskFV~~VRysP-DG 202 (603)
T KOG0318|consen 124 GRERFGHVFLWDSGNSVGEITGHSRRINSVDFKPSRPFRIATGSDDNTVAFFEGPPFKFKSSFREHSKFVNCVRYSP-DG 202 (603)
T ss_pred CccceeEEEEecCCCccceeeccceeEeeeeccCCCceEEEeccCCCeEEEeeCCCeeeeecccccccceeeEEECC-CC
Confidence 1 2344454443222110 0111244556678999999999999 67
Q ss_pred CEEEEEeCCCcEEEEecCCCCCCCCCCCCCCccceEEEecccCceecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeE
Q 004477 161 HVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFA 240 (751)
Q Consensus 161 ~~l~s~s~Dg~I~iwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~I 240 (751)
.+|+|++.||+|.+||-.+++.. ..+.....|...|.+++|+| |+..+++++.|.++
T Consensus 203 ~~Fat~gsDgki~iyDGktge~v----------------------g~l~~~~aHkGsIfalsWsP-Ds~~~~T~SaDkt~ 259 (603)
T KOG0318|consen 203 SRFATAGSDGKIYIYDGKTGEKV----------------------GELEDSDAHKGSIFALSWSP-DSTQFLTVSADKTI 259 (603)
T ss_pred CeEEEecCCccEEEEcCCCccEE----------------------EEecCCCCccccEEEEEECC-CCceEEEecCCceE
Confidence 99999999999999998887632 11233456899999999999 58999999999999
Q ss_pred EEEeCCCCCCccccCCCCC-------------------CCCccccccccccc----cCCccccceEEEEEcCCCCEEEEE
Q 004477 241 RLYDRRMLPPLTSCQKRMS-------------------PPPCVNYFCPMHLS----EHGRSSLHLTHVTFSPNGEEVLLS 297 (751)
Q Consensus 241 riwD~~~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~----~~g~~~~~vt~v~fspdg~~Ll~~ 297 (751)
||||..+.+.+.++..... ....+.++.+.+.. ..||.. .|++++.+||+++|+++
T Consensus 260 KIWdVs~~slv~t~~~~~~v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~~~~~i~GHnK-~ITaLtv~~d~~~i~Sg 338 (603)
T KOG0318|consen 260 KIWDVSTNSLVSTWPMGSTVEDQQVGCLWQKDHLITVSLSGTINYLNPSDPSVLKVISGHNK-SITALTVSPDGKTIYSG 338 (603)
T ss_pred EEEEeeccceEEEeecCCchhceEEEEEEeCCeEEEEEcCcEEEEecccCCChhheeccccc-ceeEEEEcCCCCEEEee
Confidence 9999998876655433221 01112222222211 146665 69999999999999999
Q ss_pred eCCCcEEEEECCCCC
Q 004477 298 YSGEHVYLMDVNHAG 312 (751)
Q Consensus 298 s~d~~I~lwdl~~~~ 312 (751)
+.||.|.-||+.++.
T Consensus 339 syDG~I~~W~~~~g~ 353 (603)
T KOG0318|consen 339 SYDGHINSWDSGSGT 353 (603)
T ss_pred ccCceEEEEecCCcc
Confidence 999999999999864
No 38
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.96 E-value=3.1e-28 Score=236.17 Aligned_cols=216 Identities=21% Similarity=0.340 Sum_probs=177.1
Q ss_pred cEEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCC------------------CeEEEEecccCCcceEEEEEecC
Q 004477 43 ERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSS------------------RKLLHSIETGHSANVFCTKFVPE 104 (751)
Q Consensus 43 ~~~L~gH~~~V~~l~~s~dg~~LaSgs~Dg~I~IWd~~~------------------~~~~~~l~~~h~~~V~~v~fsp~ 104 (751)
...|..|++.+.+-+|++||.++|+||.|..|+|.|++. .-.+.++ -.|...|+++.|+|.
T Consensus 105 t~ylt~HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTl-YDH~devn~l~FHPr 183 (430)
T KOG0640|consen 105 TKYLTSHKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTL-YDHVDEVNDLDFHPR 183 (430)
T ss_pred eEEEeecccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeeh-hhccCcccceeecch
Confidence 356788999999999999999999999999999999862 1245566 689999999999999
Q ss_pred CCCcEEEEEECCCcEEEEECCCCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCCC
Q 004477 105 TSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCP 184 (751)
Q Consensus 105 s~~~~l~sgs~Dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~ 184 (751)
..+|++|+.|++|++||+.....+ +..++++ ...+|.+|.|+| .|.+|+.|..-.++++||+.+-++..
T Consensus 184 --e~ILiS~srD~tvKlFDfsK~saK-------rA~K~~q-d~~~vrsiSfHP-sGefllvgTdHp~~rlYdv~T~Qcfv 252 (430)
T KOG0640|consen 184 --ETILISGSRDNTVKLFDFSKTSAK-------RAFKVFQ-DTEPVRSISFHP-SGEFLLVGTDHPTLRLYDVNTYQCFV 252 (430)
T ss_pred --hheEEeccCCCeEEEEecccHHHH-------HHHHHhh-ccceeeeEeecC-CCceEEEecCCCceeEEeccceeEee
Confidence 799999999999999999864332 1233333 567899999999 77899999999999999999876321
Q ss_pred CCCCCCCccceEEEecccCceecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCccccCCCCCCCCcc
Q 004477 185 PAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCV 264 (751)
Q Consensus 185 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~~~~~~~~~~~~~~ 264 (751)
. ......|...|+++.+++. +++.++|+.||.|+|||--+.+ |+
T Consensus 253 s----------------------anPd~qht~ai~~V~Ys~t-~~lYvTaSkDG~IklwDGVS~r-------------Cv 296 (430)
T KOG0640|consen 253 S----------------------ANPDDQHTGAITQVRYSST-GSLYVTASKDGAIKLWDGVSNR-------------CV 296 (430)
T ss_pred e----------------------cCcccccccceeEEEecCC-ccEEEEeccCCcEEeeccccHH-------------HH
Confidence 1 0112347889999999995 8999999999999999976654 66
Q ss_pred ccccccccccCCccccceEEEEEcCCCCEEEEEeCCCcEEEEECCCCC
Q 004477 265 NYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAG 312 (751)
Q Consensus 265 ~~~~~~~~~~~g~~~~~vt~v~fspdg~~Ll~~s~d~~I~lwdl~~~~ 312 (751)
..+... |.+..|++..|..+|+||++++.|..|+||.+.++.
T Consensus 297 ~t~~~A------H~gsevcSa~Ftkn~kyiLsSG~DS~vkLWEi~t~R 338 (430)
T KOG0640|consen 297 RTIGNA------HGGSEVCSAVFTKNGKYILSSGKDSTVKLWEISTGR 338 (430)
T ss_pred HHHHhh------cCCceeeeEEEccCCeEEeecCCcceeeeeeecCCc
Confidence 655433 444479999999999999999999999999999954
No 39
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.96 E-value=4.3e-29 Score=267.33 Aligned_cols=207 Identities=20% Similarity=0.268 Sum_probs=173.9
Q ss_pred cCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEecccCCcceEEEEEecCCCCcEEEEEECCCcEEEEECCCC
Q 004477 48 GHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRF 127 (751)
Q Consensus 48 gH~~~V~~l~~s~dg~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~Dg~V~vwd~~~~ 127 (751)
.-...+++++..||+++|++++..+.+++|++.+++.+...+..|+++|.-++|.|. +.++++|+.|+.|+|||+..+
T Consensus 60 ed~d~ita~~l~~d~~~L~~a~rs~llrv~~L~tgk~irswKa~He~Pvi~ma~~~~--g~LlAtggaD~~v~VWdi~~~ 137 (775)
T KOG0319|consen 60 EDEDEITALALTPDEEVLVTASRSQLLRVWSLPTGKLIRSWKAIHEAPVITMAFDPT--GTLLATGGADGRVKVWDIKNG 137 (775)
T ss_pred cchhhhheeeecCCccEEEEeeccceEEEEEcccchHhHhHhhccCCCeEEEEEcCC--CceEEeccccceEEEEEeeCC
Confidence 345679999999999999999999999999999999999886569999999999999 789999999999999999965
Q ss_pred CCCCCCCCCCCCceeecccCCceeEEEEecCCC-CEEEEEeCCCcEEEEecCCCCCCCCCCCCCCccceEEEecccCcee
Q 004477 128 SGRGLDDNAITPSALYQCHTRRVKKLAVEVGNP-HVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKR 206 (751)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~-~~l~s~s~Dg~I~iwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 206 (751)
.+.+.|++|.+.|.++.|+|+-. .+|++|+.|+++++||++....|
T Consensus 138 ----------~~th~fkG~gGvVssl~F~~~~~~~lL~sg~~D~~v~vwnl~~~~tc----------------------- 184 (775)
T KOG0319|consen 138 ----------YCTHSFKGHGGVVSSLLFHPHWNRWLLASGATDGTVRVWNLNDKRTC----------------------- 184 (775)
T ss_pred ----------EEEEEecCCCceEEEEEeCCccchhheeecCCCceEEEEEcccCchH-----------------------
Confidence 55899999999999999998432 36889999999999999976533
Q ss_pred cccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCccccCCCCCCCCccccccccccccCCccccceEEEE
Q 004477 207 SLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVT 286 (751)
Q Consensus 207 ~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~vt~v~ 286 (751)
+.....|...|++++|.++ +..+++++.|..|.|||+...+....++. ...+-++.
T Consensus 185 -l~~~~~H~S~vtsL~~~~d-~~~~ls~~RDkvi~vwd~~~~~~l~~lp~----------------------ye~~E~vv 240 (775)
T KOG0319|consen 185 -LHTMILHKSAVTSLAFSED-SLELLSVGRDKVIIVWDLVQYKKLKTLPL----------------------YESLESVV 240 (775)
T ss_pred -HHHHHhhhhheeeeeeccC-CceEEEeccCcEEEEeehhhhhhhheech----------------------hhheeeEE
Confidence 3334458889999999995 89999999999999999965443322210 01366677
Q ss_pred EcCC-----CCEEEEEeCCCcEEEEECCCCCc
Q 004477 287 FSPN-----GEEVLLSYSGEHVYLMDVNHAGG 313 (751)
Q Consensus 287 fspd-----g~~Ll~~s~d~~I~lwdl~~~~~ 313 (751)
+-++ |.++++.+.+|.+++||..++..
T Consensus 241 ~l~~~~~~~~~~~~TaG~~g~~~~~d~es~~~ 272 (775)
T KOG0319|consen 241 RLREELGGKGEYIITAGGSGVVQYWDSESGKC 272 (775)
T ss_pred EechhcCCcceEEEEecCCceEEEEecccchh
Confidence 7776 77999999999999999998653
No 40
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.96 E-value=2.1e-28 Score=238.26 Aligned_cols=205 Identities=23% Similarity=0.459 Sum_probs=172.2
Q ss_pred cCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEec-------ccCCcceEEEEEecCCCCcEEEEEECCCcEE
Q 004477 48 GHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIE-------TGHSANVFCTKFVPETSDELVVSGAGDAEVR 120 (751)
Q Consensus 48 gH~~~V~~l~~s~dg~~LaSgs~Dg~I~IWd~~~~~~~~~l~-------~~h~~~V~~v~fsp~s~~~~l~sgs~Dg~V~ 120 (751)
|.+..|.|..|+|||++|+|||.||.|-|||+.+|+....+. .-|..+|.|+.|+.+ ...|++|+.||.|+
T Consensus 211 g~KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRD--sEMlAsGsqDGkIK 288 (508)
T KOG0275|consen 211 GQKSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRD--SEMLASGSQDGKIK 288 (508)
T ss_pred ccccchhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeeccc--HHHhhccCcCCcEE
Confidence 456678899999999999999999999999999987655431 357899999999999 58999999999999
Q ss_pred EEECCCCCCCCCCCCCCCCceeec-ccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCCCCCCCCCCccceEEEe
Q 004477 121 LFNLSRFSGRGLDDNAITPSALYQ-CHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLD 199 (751)
Q Consensus 121 vwd~~~~~~~~~~~~~~~~~~~~~-~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~~~~~~~~~~~~l~~ 199 (751)
||.+.++ .++..|. .|+..|+++.|+.++ ..+++++.|.++|+.-+..++.
T Consensus 289 vWri~tG----------~ClRrFdrAHtkGvt~l~FSrD~-SqiLS~sfD~tvRiHGlKSGK~----------------- 340 (508)
T KOG0275|consen 289 VWRIETG----------QCLRRFDRAHTKGVTCLSFSRDN-SQILSASFDQTVRIHGLKSGKC----------------- 340 (508)
T ss_pred EEEEecc----------hHHHHhhhhhccCeeEEEEccCc-chhhcccccceEEEeccccchh-----------------
Confidence 9999975 4577776 899999999999955 5666999999999999988874
Q ss_pred cccCceecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCccccCCCCCCCCccccccccccccCCccc
Q 004477 200 LRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSS 279 (751)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 279 (751)
+..+.+|...|+...|++ +++.+++++.||+|++|+..+.+ |+..|.|.. ..
T Consensus 341 --------LKEfrGHsSyvn~a~ft~-dG~~iisaSsDgtvkvW~~Ktte-------------C~~Tfk~~~------~d 392 (508)
T KOG0275|consen 341 --------LKEFRGHSSYVNEATFTD-DGHHIISASSDGTVKVWHGKTTE-------------CLSTFKPLG------TD 392 (508)
T ss_pred --------HHHhcCccccccceEEcC-CCCeEEEecCCccEEEecCcchh-------------hhhhccCCC------Cc
Confidence 445567889999999999 58999999999999999998765 566665543 34
Q ss_pred cceEEEEEcCC-CCEEEEEeCCCcEEEEECCC
Q 004477 280 LHLTHVTFSPN-GEEVLLSYSGEHVYLMDVNH 310 (751)
Q Consensus 280 ~~vt~v~fspd-g~~Ll~~s~d~~I~lwdl~~ 310 (751)
++|+++..-|. -..++++...++|+|.++..
T Consensus 393 ~~vnsv~~~PKnpeh~iVCNrsntv~imn~qG 424 (508)
T KOG0275|consen 393 YPVNSVILLPKNPEHFIVCNRSNTVYIMNMQG 424 (508)
T ss_pred ccceeEEEcCCCCceEEEEcCCCeEEEEeccc
Confidence 47888888884 45788888899999998876
No 41
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=99.96 E-value=5.9e-27 Score=232.64 Aligned_cols=212 Identities=17% Similarity=0.262 Sum_probs=177.7
Q ss_pred cccEEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEecccCCcceEEEEEecCCCCcEEEEEECCCcEE
Q 004477 41 SQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVR 120 (751)
Q Consensus 41 ~~~~~L~gH~~~V~~l~~s~dg~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~Dg~V~ 120 (751)
.-+.+|..|++.|.+++.+|+.+++|||+.|-...||+..++..+..+ ++|+..|+++.|+.+ |.+||||..+|.|+
T Consensus 55 dS~~tF~~H~~svFavsl~P~~~l~aTGGgDD~AflW~~~~ge~~~el-tgHKDSVt~~~Fshd--gtlLATGdmsG~v~ 131 (399)
T KOG0296|consen 55 DSLVTFDKHTDSVFAVSLHPNNNLVATGGGDDLAFLWDISTGEFAGEL-TGHKDSVTCCSFSHD--GTLLATGDMSGKVL 131 (399)
T ss_pred cceeehhhcCCceEEEEeCCCCceEEecCCCceEEEEEccCCcceeEe-cCCCCceEEEEEccC--ceEEEecCCCccEE
Confidence 456789999999999999999999999999999999999999988888 999999999999999 89999999999999
Q ss_pred EEECCCCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCCCCCCCCCCccceEEEec
Q 004477 121 LFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDL 200 (751)
Q Consensus 121 vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~~~~~~~~~~~~l~~~ 200 (751)
||...++. ....+..--..+-=+.|+| -.++|+.|+.||.+-+|.+.....+
T Consensus 132 v~~~stg~----------~~~~~~~e~~dieWl~WHp-~a~illAG~~DGsvWmw~ip~~~~~----------------- 183 (399)
T KOG0296|consen 132 VFKVSTGG----------EQWKLDQEVEDIEWLKWHP-RAHILLAGSTDGSVWMWQIPSQALC----------------- 183 (399)
T ss_pred EEEcccCc----------eEEEeecccCceEEEEecc-cccEEEeecCCCcEEEEECCCccee-----------------
Confidence 99999752 2334433445566688999 7789999999999999998875322
Q ss_pred ccCceecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCccccCCCCCCCCccccccccccccCCcccc
Q 004477 201 RCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSL 280 (751)
Q Consensus 201 ~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 280 (751)
..+.+|..++++=.|.|+ ++.++++..||+|++|++.+++++..+... ...
T Consensus 184 --------kv~~Gh~~~ct~G~f~pd-GKr~~tgy~dgti~~Wn~ktg~p~~~~~~~--------------------e~~ 234 (399)
T KOG0296|consen 184 --------KVMSGHNSPCTCGEFIPD-GKRILTGYDDGTIIVWNPKTGQPLHKITQA--------------------EGL 234 (399)
T ss_pred --------eEecCCCCCcccccccCC-CceEEEEecCceEEEEecCCCceeEEeccc--------------------ccC
Confidence 223457888999999995 899999999999999999998765443211 122
Q ss_pred ceEEEEEcCCCCEEEEEeCCCcEEEEECCCCC
Q 004477 281 HLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAG 312 (751)
Q Consensus 281 ~vt~v~fspdg~~Ll~~s~d~~I~lwdl~~~~ 312 (751)
..+++.++..+..++.|..++.+++-+..+++
T Consensus 235 ~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgK 266 (399)
T KOG0296|consen 235 ELPCISLNLAGSTLTKGNSEGVACGVNNGSGK 266 (399)
T ss_pred cCCccccccccceeEeccCCccEEEEccccce
Confidence 46789999999999999999999999887753
No 42
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.96 E-value=1.1e-26 Score=248.90 Aligned_cols=248 Identities=15% Similarity=0.195 Sum_probs=185.5
Q ss_pred hccccccEEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCeE--EEEecccCCcceEEEEEecCCCCcEEEEEE
Q 004477 37 VRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKL--LHSIETGHSANVFCTKFVPETSDELVVSGA 114 (751)
Q Consensus 37 i~~~~~~~~L~gH~~~V~~l~~s~dg~~LaSgs~Dg~I~IWd~~~~~~--~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs 114 (751)
...+.+.+++.||-+.|.+|.|+.|.++|++||.|-+++||++...+. ...+ .+|++.|...-|..+ ...++|.+
T Consensus 132 ~~pFvl~r~~~g~fddi~si~Ws~DSr~l~~gsrD~s~rl~~v~~~k~~~~~~l-~gHkd~VvacfF~~~--~~~l~tvs 208 (893)
T KOG0291|consen 132 FNPFVLHRTYLGHFDDITSIDWSDDSRLLVTGSRDLSARLFGVDGNKNLFTYAL-NGHKDYVVACFFGAN--SLDLYTVS 208 (893)
T ss_pred cCcceEeeeecCCccceeEEEeccCCceEEeccccceEEEEEeccccccceEec-cCCCcceEEEEeccC--cceEEEEe
Confidence 445677889999999999999999999999999999999999876554 4445 899999999999998 57899999
Q ss_pred CCCcEEEEECCCCCCCCCC---------------CCC--CCC-------ceeecccCCceeEEEEecCCCCEEEEEeCCC
Q 004477 115 GDAEVRLFNLSRFSGRGLD---------------DNA--ITP-------SALYQCHTRRVKKLAVEVGNPHVVWSASEDG 170 (751)
Q Consensus 115 ~Dg~V~vwd~~~~~~~~~~---------------~~~--~~~-------~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg 170 (751)
.||.+.+|........... +.+ ..+ ...+......|++.+|++ ..++|++|-..|
T Consensus 209 kdG~l~~W~~~~~P~~~~~~~kd~eg~~d~~~~~~~Eek~~~~~~~k~~k~~ln~~~~kvtaa~fH~-~t~~lvvgFssG 287 (893)
T KOG0291|consen 209 KDGALFVWTCDLRPPELDKAEKDEEGSDDEEMDEDGEEKTHKIFWYKTKKHYLNQNSSKVTAAAFHK-GTNLLVVGFSSG 287 (893)
T ss_pred cCceEEEEEecCCCcccccccccccccccccccccchhhhcceEEEEEEeeeecccccceeeeeccC-CceEEEEEecCC
Confidence 9999999998732211110 000 000 112233347799999999 778999999999
Q ss_pred cEEEEecCCCCCCCCCCCCCCccc--------------------eEEEecccCceecccCCCCCccceEEEEEeCCCCcE
Q 004477 171 TLRQHDFRQGSSCPPAGSSHQECR--------------------NILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHL 230 (751)
Q Consensus 171 ~I~iwDlr~~~~~~~~~~~~~~~~--------------------~~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~ 230 (751)
.+.+|.+-.-..+........... -.+|+..... .+....+|...+++++++| |+.+
T Consensus 288 ~f~LyelP~f~lih~LSis~~~I~t~~~N~tGDWiA~g~~klgQLlVweWqsEs--YVlKQQgH~~~i~~l~YSp-Dgq~ 364 (893)
T KOG0291|consen 288 EFGLYELPDFNLIHSLSISDQKILTVSFNSTGDWIAFGCSKLGQLLVWEWQSES--YVLKQQGHSDRITSLAYSP-DGQL 364 (893)
T ss_pred eeEEEecCCceEEEEeecccceeeEEEecccCCEEEEcCCccceEEEEEeeccc--eeeeccccccceeeEEECC-CCcE
Confidence 999998876544322111111111 1233332221 2334466889999999999 5899
Q ss_pred EEEEeCCCeEEEEeCCCCCCccccCCCCCCCCccccccccccccCCccccceEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 004477 231 LLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNH 310 (751)
Q Consensus 231 l~sgs~D~~IriwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~vt~v~fspdg~~Ll~~s~d~~I~lwdl~~ 310 (751)
|++|+.||.|+|||...+- |..+| ..|.+ .|+.+.|+..|+.|++++.||+|+.||+..
T Consensus 365 iaTG~eDgKVKvWn~~Sgf-------------C~vTF-------teHts-~Vt~v~f~~~g~~llssSLDGtVRAwDlkR 423 (893)
T KOG0291|consen 365 IATGAEDGKVKVWNTQSGF-------------CFVTF-------TEHTS-GVTAVQFTARGNVLLSSSLDGTVRAWDLKR 423 (893)
T ss_pred EEeccCCCcEEEEeccCce-------------EEEEe-------ccCCC-ceEEEEEEecCCEEEEeecCCeEEeeeecc
Confidence 9999999999999998753 55555 23555 599999999999999999999999999988
Q ss_pred CC
Q 004477 311 AG 312 (751)
Q Consensus 311 ~~ 312 (751)
..
T Consensus 424 Yr 425 (893)
T KOG0291|consen 424 YR 425 (893)
T ss_pred cc
Confidence 53
No 43
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.96 E-value=2e-27 Score=250.64 Aligned_cols=227 Identities=21% Similarity=0.285 Sum_probs=156.7
Q ss_pred EEECC---CCCEEEEEeCCCcEEEEeCCCCeE------EEEecccCCcceEEEEEecCCCCcEEEEEECCCcEEEEECCC
Q 004477 56 ISWNS---KGSLLISGSDDTHINVWSYSSRKL------LHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSR 126 (751)
Q Consensus 56 l~~s~---dg~~LaSgs~Dg~I~IWd~~~~~~------~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~Dg~V~vwd~~~ 126 (751)
..|++ ...+||.+.+||.|.++|...... +... ..|.+.|+.++|.|. ...|+++++|.++++||+..
T Consensus 55 ~sFs~~~n~eHiLavadE~G~i~l~dt~~~~fr~ee~~lk~~-~aH~nAifDl~wapg--e~~lVsasGDsT~r~Wdvk~ 131 (720)
T KOG0321|consen 55 DSFSAAPNKEHILAVADEDGGIILFDTKSIVFRLEERQLKKP-LAHKNAIFDLKWAPG--ESLLVSASGDSTIRPWDVKT 131 (720)
T ss_pred ccccCCCCccceEEEecCCCceeeecchhhhcchhhhhhccc-ccccceeEeeccCCC--ceeEEEccCCceeeeeeecc
Confidence 66765 345899999999999999864322 2233 689999999999996 78999999999999999997
Q ss_pred CCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCCCCCCCCCCccceEEEecccCc--
Q 004477 127 FSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGA-- 204 (751)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~-- 204 (751)
..... ...+.+|...|++++|.|+++..|++|+.||.|.|||+|....-. ....| +.++....+.
T Consensus 132 s~l~G--------~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~----~e~~~-~~~~~~~n~~pt 198 (720)
T KOG0321|consen 132 SRLVG--------GRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDA----LEEFD-NRIYGRHNTAPT 198 (720)
T ss_pred ceeec--------ceeecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhh----HHHHh-hhhhccccCCCC
Confidence 53221 335889999999999999999999999999999999999765110 00011 1111111110
Q ss_pred -----eecccCCCCCcc----ceEEEEEeCCCCcEEEEEeC-CCeEEEEeCCCCCCccccCCCCCCCCcccccccccccc
Q 004477 205 -----KRSLADPPKQTL----SLKSCDISSTRPHLLLVGGS-DAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSE 274 (751)
Q Consensus 205 -----~~~~~~~~~~~~----~v~~i~~sp~~~~~l~sgs~-D~~IriwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (751)
...+.....+.. .|+.+.| . |...||+++. |+.|+|||+|+.......+ +.....+ +.+
T Consensus 199 pskp~~kr~~k~kA~s~ti~ssvTvv~f-k-De~tlaSaga~D~~iKVWDLRk~~~~~r~e----p~~~~~~--~t~--- 267 (720)
T KOG0321|consen 199 PSKPLKKRIRKWKAASNTIFSSVTVVLF-K-DESTLASAGAADSTIKVWDLRKNYTAYRQE----PRGSDKY--PTH--- 267 (720)
T ss_pred CCchhhccccccccccCceeeeeEEEEE-e-ccceeeeccCCCcceEEEeecccccccccC----CCcccCc--cCc---
Confidence 011111111222 3444444 4 4577887776 9999999999876443221 1111111 111
Q ss_pred CCccccceEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 004477 275 HGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNH 310 (751)
Q Consensus 275 ~g~~~~~vt~v~fspdg~~Ll~~s~d~~I~lwdl~~ 310 (751)
......++++..+..|.+|++++.|+.||+||+..
T Consensus 268 -skrs~G~~nL~lDssGt~L~AsCtD~sIy~ynm~s 302 (720)
T KOG0321|consen 268 -SKRSVGQVNLILDSSGTYLFASCTDNSIYFYNMRS 302 (720)
T ss_pred -ccceeeeEEEEecCCCCeEEEEecCCcEEEEeccc
Confidence 12233589999999999999999999999999887
No 44
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=2.7e-28 Score=241.94 Aligned_cols=246 Identities=19% Similarity=0.274 Sum_probs=208.4
Q ss_pred ccccccchhhhccccccEEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCC-CeEEEEecccCCcceEEEEEecCC
Q 004477 27 NHSLQMHSSLVRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSS-RKLLHSIETGHSANVFCTKFVPET 105 (751)
Q Consensus 27 ~~~l~~~~~~i~~~~~~~~L~gH~~~V~~l~~s~dg~~LaSgs~Dg~I~IWd~~~-~~~~~~l~~~h~~~V~~v~fsp~s 105 (751)
+.++++++..... ++..|+||++.|..|+|+..|++||++|.|-.+++||..+ .+++..+ .+|.-.|.+++|.|.
T Consensus 129 d~tikv~D~~tg~--~e~~LrGHt~sv~di~~~a~Gk~l~tcSsDl~~~LWd~~~~~~c~ks~-~gh~h~vS~V~f~P~- 204 (406)
T KOG0295|consen 129 DATIKVFDTETGE--LERSLRGHTDSVFDISFDASGKYLATCSSDLSAKLWDFDTFFRCIKSL-IGHEHGVSSVFFLPL- 204 (406)
T ss_pred CceEEEEEccchh--hhhhhhccccceeEEEEecCccEEEecCCccchhheeHHHHHHHHHHh-cCcccceeeEEEEec-
Confidence 5677777755544 4899999999999999999999999999999999999876 4556666 799999999999999
Q ss_pred CCcEEEEEECCCcEEEEECCCCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCCCC
Q 004477 106 SDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPP 185 (751)
Q Consensus 106 ~~~~l~sgs~Dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~ 185 (751)
|.+|+|++.|.+|+.|++.++ -++.++.+|...|+.++.+. ++.++++|+.|.+|++|-+.+.+..
T Consensus 205 -gd~ilS~srD~tik~We~~tg----------~cv~t~~~h~ewvr~v~v~~-DGti~As~s~dqtl~vW~~~t~~~k-- 270 (406)
T KOG0295|consen 205 -GDHILSCSRDNTIKAWECDTG----------YCVKTFPGHSEWVRMVRVNQ-DGTIIASCSNDQTLRVWVVATKQCK-- 270 (406)
T ss_pred -CCeeeecccccceeEEecccc----------eeEEeccCchHhEEEEEecC-CeeEEEecCCCceEEEEEeccchhh--
Confidence 799999999999999999975 56899999999999999988 7899999999999999999887532
Q ss_pred CCCCCCccceEEEecccCceecccCCCCCccceEEEEEeCC--------------CCcEEEEEeCCCeEEEEeCCCCCCc
Q 004477 186 AGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISST--------------RPHLLLVGGSDAFARLYDRRMLPPL 251 (751)
Q Consensus 186 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~--------------~~~~l~sgs~D~~IriwD~~~~~~~ 251 (751)
.....|...|.|++|-|. .+.++++++.|++||+||+.++..+
T Consensus 271 -----------------------~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~cL 327 (406)
T KOG0295|consen 271 -----------------------AELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGMCL 327 (406)
T ss_pred -----------------------hhhhccccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCCeEE
Confidence 122235666777777653 2359999999999999999987533
Q ss_pred cccCCCCCCCCccccccccccccCCccccceEEEEEcCCCCEEEEEeCCCcEEEEECCCCCcceeeeecCCCceeEEeCC
Q 004477 252 TSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVGDASKIMSFTP 331 (751)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~vt~v~fspdg~~Ll~~s~d~~I~lwdl~~~~~~~~~~~~~~~~~~~~~sp 331 (751)
-.+ .||.+ +|..++|+|-|+||+++..|+++++||+++..+......+.+....+.|+.
T Consensus 328 -------------~tL-------~ghdn-wVr~~af~p~Gkyi~ScaDDktlrvwdl~~~~cmk~~~ah~hfvt~lDfh~ 386 (406)
T KOG0295|consen 328 -------------FTL-------VGHDN-WVRGVAFSPGGKYILSCADDKTLRVWDLKNLQCMKTLEAHEHFVTSLDFHK 386 (406)
T ss_pred -------------EEE-------ecccc-eeeeeEEcCCCeEEEEEecCCcEEEEEeccceeeeccCCCcceeEEEecCC
Confidence 222 45655 799999999999999999999999999999888888888888888888887
Q ss_pred CCC
Q 004477 332 TLN 334 (751)
Q Consensus 332 ~~~ 334 (751)
+..
T Consensus 387 ~~p 389 (406)
T KOG0295|consen 387 TAP 389 (406)
T ss_pred CCc
Confidence 654
No 45
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=1.5e-27 Score=258.86 Aligned_cols=220 Identities=19% Similarity=0.264 Sum_probs=181.0
Q ss_pred EeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEecccCCcceEEEEEecCCCCcEEEEEECCCcEEEEEC
Q 004477 45 ELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNL 124 (751)
Q Consensus 45 ~L~gH~~~V~~l~~s~dg~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~Dg~V~vwd~ 124 (751)
.++..+..|-.|+|+|.-.+++++--.|.|.+||+.-+.++..| ..|.++|..|.|+|. ..+|+||+.|-.|+||+.
T Consensus 4 kfEskSsRvKglsFHP~rPwILtslHsG~IQlWDYRM~tli~rF-deHdGpVRgv~FH~~--qplFVSGGDDykIkVWnY 80 (1202)
T KOG0292|consen 4 KFESKSSRVKGLSFHPKRPWILTSLHSGVIQLWDYRMGTLIDRF-DEHDGPVRGVDFHPT--QPLFVSGGDDYKIKVWNY 80 (1202)
T ss_pred hhhcccccccceecCCCCCEEEEeecCceeeeehhhhhhHHhhh-hccCCccceeeecCC--CCeEEecCCccEEEEEec
Confidence 34566788999999999999999999999999999999999999 899999999999999 799999999999999999
Q ss_pred CCCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCCCCCCCCCCccceEEEecccCc
Q 004477 125 SRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGA 204 (751)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~ 204 (751)
... +++.++.+|-+.|+.+.|++. --.++|+|.|.|||||+..+.++
T Consensus 81 k~r----------rclftL~GHlDYVRt~~FHhe-yPWIlSASDDQTIrIWNwqsr~~---------------------- 127 (1202)
T KOG0292|consen 81 KTR----------RCLFTLLGHLDYVRTVFFHHE-YPWILSASDDQTIRIWNWQSRKC---------------------- 127 (1202)
T ss_pred ccc----------eehhhhccccceeEEeeccCC-CceEEEccCCCeEEEEeccCCce----------------------
Confidence 964 678999999999999999994 45778999999999999988763
Q ss_pred eecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCccccCCC----C----------CCCCcccccccc
Q 004477 205 KRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKR----M----------SPPPCVNYFCPM 270 (751)
Q Consensus 205 ~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~~~~~~~----~----------~~~~~~~~~~~~ 270 (751)
+....+|...|.|..|+|. ..++++++-|.+|||||+.-++.....+.. . ....++..
T Consensus 128 ---iavltGHnHYVMcAqFhpt-EDlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK---- 199 (1202)
T KOG0292|consen 128 ---IAVLTGHNHYVMCAQFHPT-EDLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVK---- 199 (1202)
T ss_pred ---EEEEecCceEEEeeccCCc-cceEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeee----
Confidence 2233457889999999995 689999999999999999765533222110 0 00011111
Q ss_pred ccccCCccccceEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 004477 271 HLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNH 310 (751)
Q Consensus 271 ~~~~~g~~~~~vt~v~fspdg~~Ll~~s~d~~I~lwdl~~ 310 (751)
....||.. .|+-++|+|.-..|++|+.|..|++|.++.
T Consensus 200 -~VLEGHDR-GVNwaAfhpTlpliVSG~DDRqVKlWrmne 237 (1202)
T KOG0292|consen 200 -HVLEGHDR-GVNWAAFHPTLPLIVSGADDRQVKLWRMNE 237 (1202)
T ss_pred -eeeccccc-ccceEEecCCcceEEecCCcceeeEEEecc
Confidence 11246655 499999999999999999999999998766
No 46
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.96 E-value=3.9e-27 Score=234.84 Aligned_cols=228 Identities=18% Similarity=0.238 Sum_probs=172.2
Q ss_pred cCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEecccCCcceEEEEEecC-CCCcEEEEEECCCcEEEEECCC
Q 004477 48 GHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPE-TSDELVVSGAGDAEVRLFNLSR 126 (751)
Q Consensus 48 gH~~~V~~l~~s~dg~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~-s~~~~l~sgs~Dg~V~vwd~~~ 126 (751)
-|.+-|.+|.-. ++.++||+.||+++|||.. |+...++ .||.++|.+++|.-. .....|++++.|.++++|-++.
T Consensus 103 ~hdDWVSsv~~~--~~~IltgsYDg~~riWd~~-Gk~~~~~-~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~ 178 (423)
T KOG0313|consen 103 LHDDWVSSVKGA--SKWILTGSYDGTSRIWDLK-GKSIKTI-VGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNV 178 (423)
T ss_pred cchhhhhhhccc--CceEEEeecCCeeEEEecC-CceEEEE-ecCCcceeeeEEEecCCccceEEEecCCceEEEEEecC
Confidence 378888888877 7899999999999999975 8888888 899999998888654 1123599999999999999986
Q ss_pred CCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCCCCCCCCCCccceEEEecccCcee
Q 004477 127 FSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKR 206 (751)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 206 (751)
+... .+.++...||...|-+++..+ ++..|+|||.|.+|.+|+......-...........+.-..-..+...
T Consensus 179 ~~~~------~~~~~~~~GHk~~V~sVsv~~-sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~ 251 (423)
T KOG0313|consen 179 GENK------VKALKVCRGHKRSVDSVSVDS-SGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRT 251 (423)
T ss_pred chhh------hhHHhHhcccccceeEEEecC-CCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccC
Confidence 5432 255667779999999999998 678999999999999999332211100000000000111111223333
Q ss_pred cccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCccccCCCCCCCCccccccccccccCCccccceEEEE
Q 004477 207 SLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVT 286 (751)
Q Consensus 207 ~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~vt~v~ 286 (751)
.+....+|..+|.++.|++ ...+.+++.|.+|+.||+.++.....+ ..+..++++.
T Consensus 252 P~vtl~GHt~~Vs~V~w~d--~~v~yS~SwDHTIk~WDletg~~~~~~----------------------~~~ksl~~i~ 307 (423)
T KOG0313|consen 252 PLVTLEGHTEPVSSVVWSD--ATVIYSVSWDHTIKVWDLETGGLKSTL----------------------TTNKSLNCIS 307 (423)
T ss_pred ceEEecccccceeeEEEcC--CCceEeecccceEEEEEeecccceeee----------------------ecCcceeEee
Confidence 4556678999999999998 579999999999999999987654332 1122589999
Q ss_pred EcCCCCEEEEEeCCCcEEEEECCC
Q 004477 287 FSPNGEEVLLSYSGEHVYLMDVNH 310 (751)
Q Consensus 287 fspdg~~Ll~~s~d~~I~lwdl~~ 310 (751)
.+|..+.|++|+.|..|+|||.++
T Consensus 308 ~~~~~~Ll~~gssdr~irl~DPR~ 331 (423)
T KOG0313|consen 308 YSPLSKLLASGSSDRHIRLWDPRT 331 (423)
T ss_pred cccccceeeecCCCCceeecCCCC
Confidence 999999999999999999999777
No 47
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.96 E-value=6.5e-28 Score=227.68 Aligned_cols=205 Identities=18% Similarity=0.266 Sum_probs=173.3
Q ss_pred cEEeccCCCcEEEEEECC---CCCEEEEEeCCCcEEEEeCCCCeEEEEecccCCcceEEEEEecCCCCcEEEEEECCCcE
Q 004477 43 ERELEGHQGCVNAISWNS---KGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEV 119 (751)
Q Consensus 43 ~~~L~gH~~~V~~l~~s~---dg~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~Dg~V 119 (751)
-.+..||+.+|-.|+||| +|-+|+|++.|+.-.+-+-++|..+.+| .||++.|++.....+ ...-++++.|-+.
T Consensus 7 pl~c~ghtrpvvdl~~s~itp~g~flisa~kd~~pmlr~g~tgdwigtf-eghkgavw~~~l~~n--a~~aasaaadfta 83 (334)
T KOG0278|consen 7 PLTCHGHTRPVVDLAFSPITPDGYFLISASKDGKPMLRNGDTGDWIGTF-EGHKGAVWSATLNKN--ATRAASAAADFTA 83 (334)
T ss_pred ceEEcCCCcceeEEeccCCCCCceEEEEeccCCCchhccCCCCCcEEee-eccCcceeeeecCch--hhhhhhhcccchh
Confidence 346789999999999986 8999999999999999999999999999 899999999999887 5778899999999
Q ss_pred EEEECCCCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCCCCCCCCCCccceEEEe
Q 004477 120 RLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLD 199 (751)
Q Consensus 120 ~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~~~~~~~~~~~~l~~ 199 (751)
+|||.-++ ..++.|. |..-|+.++|+. +.+.|++|+.++.+|+||+...+..+
T Consensus 84 kvw~a~tg----------delhsf~-hkhivk~~af~~-ds~~lltgg~ekllrvfdln~p~App--------------- 136 (334)
T KOG0278|consen 84 KVWDAVTG----------DELHSFE-HKHIVKAVAFSQ-DSNYLLTGGQEKLLRVFDLNRPKAPP--------------- 136 (334)
T ss_pred hhhhhhhh----------hhhhhhh-hhheeeeEEecc-cchhhhccchHHHhhhhhccCCCCCc---------------
Confidence 99999875 3366665 999999999998 66888899999999999999876432
Q ss_pred cccCceecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCccccCCCCCCCCccccccccccccCCccc
Q 004477 200 LRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSS 279 (751)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 279 (751)
....+|...|..+-|... .+.|++++.|++||+||.++++.+.++.. .
T Consensus 137 ---------~E~~ghtg~Ir~v~wc~e-D~~iLSSadd~tVRLWD~rTgt~v~sL~~----------------------~ 184 (334)
T KOG0278|consen 137 ---------KEISGHTGGIRTVLWCHE-DKCILSSADDKTVRLWDHRTGTEVQSLEF----------------------N 184 (334)
T ss_pred ---------hhhcCCCCcceeEEEecc-CceEEeeccCCceEEEEeccCcEEEEEec----------------------C
Confidence 223457788999999885 57889989999999999999987665421 2
Q ss_pred cceEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 004477 280 LHLTHVTFSPNGEEVLLSYSGEHVYLMDVNH 310 (751)
Q Consensus 280 ~~vt~v~fspdg~~Ll~~s~d~~I~lwdl~~ 310 (751)
.+|+++.++++|++|.++ ..+.|.+||..+
T Consensus 185 s~VtSlEvs~dG~ilTia-~gssV~Fwdaks 214 (334)
T KOG0278|consen 185 SPVTSLEVSQDGRILTIA-YGSSVKFWDAKS 214 (334)
T ss_pred CCCcceeeccCCCEEEEe-cCceeEEecccc
Confidence 259999999999976555 456899999877
No 48
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.95 E-value=1.2e-27 Score=237.04 Aligned_cols=201 Identities=17% Similarity=0.248 Sum_probs=164.1
Q ss_pred cEEeccCCCcEEEEEECCCC-CEEEEEeCCCcEEEEeCCCCeEEEEecccCCcceEEEEEecCCCCcEEEEEECCCcEEE
Q 004477 43 ERELEGHQGCVNAISWNSKG-SLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRL 121 (751)
Q Consensus 43 ~~~L~gH~~~V~~l~~s~dg-~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~Dg~V~v 121 (751)
+..|.||.+.|.||+=+|.. ..+|||+.||.|+|||+.+..++.++ ..|.+.|..|++... .++|++.|.+|+.
T Consensus 59 v~~L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~~f-~AH~G~V~Gi~v~~~----~~~tvgdDKtvK~ 133 (433)
T KOG0268|consen 59 VGSLDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECIRTF-KAHEGLVRGICVTQT----SFFTVGDDKTVKQ 133 (433)
T ss_pred hhhccccccccchhhcCcchhhhhhccccCceEEEEehhhhhhhhee-ecccCceeeEEeccc----ceEEecCCcceee
Confidence 55679999999999999976 78999999999999999999999999 899999999999863 6899999999999
Q ss_pred EECCCCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCCCCCCCCCCccceEEEecc
Q 004477 122 FNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLR 201 (751)
Q Consensus 122 wd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~~~~~~~~~~~~l~~~~ 201 (751)
|-+.. .+++++.+ ...+..|.-+- ....|+|||+ .|-|||.+...+..
T Consensus 134 wk~~~-----------~p~~tilg-~s~~~gIdh~~-~~~~FaTcGe--~i~IWD~~R~~Pv~----------------- 181 (433)
T KOG0268|consen 134 WKIDG-----------PPLHTILG-KSVYLGIDHHR-KNSVFATCGE--QIDIWDEQRDNPVS----------------- 181 (433)
T ss_pred eeccC-----------Ccceeeec-ccccccccccc-ccccccccCc--eeeecccccCCccc-----------------
Confidence 99884 35666654 44566676655 4578999987 58899987655331
Q ss_pred cCceecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCccccCCCCCCCCccccccccccccCCccccc
Q 004477 202 CGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLH 281 (751)
Q Consensus 202 ~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 281 (751)
...-....|.++.|+|.....|++++.|+.|.|||+|..+++.+.... ..
T Consensus 182 --------smswG~Dti~svkfNpvETsILas~~sDrsIvLyD~R~~~Pl~KVi~~----------------------mR 231 (433)
T KOG0268|consen 182 --------SMSWGADSISSVKFNPVETSILASCASDRSIVLYDLRQASPLKKVILT----------------------MR 231 (433)
T ss_pred --------eeecCCCceeEEecCCCcchheeeeccCCceEEEecccCCccceeeee----------------------cc
Confidence 111134578999999998899999999999999999998887654211 13
Q ss_pred eEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 004477 282 LTHVTFSPNGEEVLLSYSGEHVYLMDVNH 310 (751)
Q Consensus 282 vt~v~fspdg~~Ll~~s~d~~I~lwdl~~ 310 (751)
.+.|+|+|.+-.++++..|..+|.||+..
T Consensus 232 TN~IswnPeafnF~~a~ED~nlY~~DmR~ 260 (433)
T KOG0268|consen 232 TNTICWNPEAFNFVAANEDHNLYTYDMRN 260 (433)
T ss_pred ccceecCccccceeeccccccceehhhhh
Confidence 56799999888888999999999999776
No 49
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.95 E-value=7.9e-27 Score=259.67 Aligned_cols=256 Identities=26% Similarity=0.385 Sum_probs=207.2
Q ss_pred ccccccchhhhcccc--ccEEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEeC-CCCeEEEEecccCCcceEEEEEec
Q 004477 27 NHSLQMHSSLVRRLS--QERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSY-SSRKLLHSIETGHSANVFCTKFVP 103 (751)
Q Consensus 27 ~~~l~~~~~~i~~~~--~~~~L~gH~~~V~~l~~s~dg~~LaSgs~Dg~I~IWd~-~~~~~~~~l~~~h~~~V~~v~fsp 103 (751)
++.+.+|.. ...+ ..++|.+|...|++++|+|+|++|++|+.|++|+|||+ ..+..+.++ .+|...|++++|+|
T Consensus 180 ~~~i~~~~~--~~~~~~~~~~l~~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd~~~~~~~~~~l-~gH~~~v~~~~f~p 256 (456)
T KOG0266|consen 180 DGLIRIWKL--EGIKSNLLRELSGHTRGVSDVAFSPDGSYLLSGSDDKTLRIWDLKDDGRNLKTL-KGHSTYVTSVAFSP 256 (456)
T ss_pred CCcEEEeec--ccccchhhccccccccceeeeEECCCCcEEEEecCCceEEEeeccCCCeEEEEe-cCCCCceEEEEecC
Confidence 445555554 3333 77888999999999999999999999999999999999 556888888 79999999999999
Q ss_pred CCCCcEEEEEECCCcEEEEECCCCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCC
Q 004477 104 ETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSC 183 (751)
Q Consensus 104 ~s~~~~l~sgs~Dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~ 183 (751)
. ++++++|+.|++|+|||++++ +++..+.+|.+.|++++|++ ++++|++++.||.|++||+.++...
T Consensus 257 ~--g~~i~Sgs~D~tvriWd~~~~----------~~~~~l~~hs~~is~~~f~~-d~~~l~s~s~d~~i~vwd~~~~~~~ 323 (456)
T KOG0266|consen 257 D--GNLLVSGSDDGTVRIWDVRTG----------ECVRKLKGHSDGISGLAFSP-DGNLLVSASYDGTIRVWDLETGSKL 323 (456)
T ss_pred C--CCEEEEecCCCcEEEEeccCC----------eEEEeeeccCCceEEEEECC-CCCEEEEcCCCccEEEEECCCCcee
Confidence 9 799999999999999999974 67899999999999999999 7789999999999999999998621
Q ss_pred CCCCCCCCccceEEEecccCceecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCccccCCCCCCCCc
Q 004477 184 PPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPC 263 (751)
Q Consensus 184 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~~~~~~~~~~~~~ 263 (751)
|... +....... .++++.|+| ++.++++++.|+.+++||++.+.....+
T Consensus 324 ---------~~~~-----------~~~~~~~~-~~~~~~fsp-~~~~ll~~~~d~~~~~w~l~~~~~~~~~--------- 372 (456)
T KOG0266|consen 324 ---------CLKL-----------LSGAENSA-PVTSVQFSP-NGKYLLSASLDRTLKLWDLRSGKSVGTY--------- 372 (456)
T ss_pred ---------eeec-----------ccCCCCCC-ceeEEEECC-CCcEEEEecCCCeEEEEEccCCcceeee---------
Confidence 0000 11111123 699999999 5899999999999999999987644322
Q ss_pred cccccccccccCCccc--cceEEEEEcCCCCEEEEEeCCCcEEEEECCCCCcceeeeec-CCCceeEEeCCCCCCcccCC
Q 004477 264 VNYFCPMHLSEHGRSS--LHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTV-GDASKIMSFTPTLNGLELQP 340 (751)
Q Consensus 264 ~~~~~~~~~~~~g~~~--~~vt~v~fspdg~~Ll~~s~d~~I~lwdl~~~~~~~~~~~~-~~~~~~~~~sp~~~~~~~~~ 340 (751)
.+|.. ..+.+..+++.|.++++|+.|+.|++||+.++........+ ...+..+.++|..+.++...
T Consensus 373 -----------~~~~~~~~~~~~~~~~~~~~~i~sg~~d~~v~~~~~~s~~~~~~l~~h~~~~~~~~~~~~~~~~~~s~s 441 (456)
T KOG0266|consen 373 -----------TGHSNLVRCIFSPTLSTGGKLIYSGSEDGSVYVWDSSSGGILQRLEGHSKAAVSDLSSHPTENLIASSS 441 (456)
T ss_pred -----------cccCCcceeEecccccCCCCeEEEEeCCceEEEEeCCccchhhhhcCCCCCceeccccCCCcCeeeecC
Confidence 12222 13566677899999999999999999999997666666666 56667788888877776654
No 50
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.95 E-value=1.9e-26 Score=219.46 Aligned_cols=206 Identities=19% Similarity=0.341 Sum_probs=169.3
Q ss_pred EEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEe-cccCCcceEEEEEecCCCCcEEEEEECCCcEEEE
Q 004477 44 RELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSI-ETGHSANVFCTKFVPETSDELVVSGAGDAEVRLF 122 (751)
Q Consensus 44 ~~L~gH~~~V~~l~~s~dg~~LaSgs~Dg~I~IWd~~~~~~~~~l-~~~h~~~V~~v~fsp~s~~~~l~sgs~Dg~V~vw 122 (751)
+++++|.+.|.+|+|+.+|..||+|+.|+++.||+++..+..... ..+|.+.|-.++|.|.+ ..+|++++.|.+|++|
T Consensus 14 r~~~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~-~d~~atas~dk~ir~w 92 (313)
T KOG1407|consen 14 RELQGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKH-PDLFATASGDKTIRIW 92 (313)
T ss_pred HHhhhhhhcceEEEEcccCceeeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCCC-CcceEEecCCceEEEE
Confidence 678899999999999999999999999999999999877544432 26899999999999997 7899999999999999
Q ss_pred ECCCCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCCCCCCCCCCccceEEEeccc
Q 004477 123 NLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRC 202 (751)
Q Consensus 123 d~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~~~~~~~~~~~~l~~~~~ 202 (751)
|++.. +++.......+.+ -+.|+| ++.+++.++.|..|...|.|+.+...
T Consensus 93 d~r~~----------k~~~~i~~~~eni-~i~wsp-~g~~~~~~~kdD~it~id~r~~~~~~------------------ 142 (313)
T KOG1407|consen 93 DIRSG----------KCTARIETKGENI-NITWSP-DGEYIAVGNKDDRITFIDARTYKIVN------------------ 142 (313)
T ss_pred EeccC----------cEEEEeeccCcce-EEEEcC-CCCEEEEecCcccEEEEEecccceee------------------
Confidence 99965 5566665444444 478999 66888899999999999999876321
Q ss_pred CceecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCccccCCCCCCCCccccccccccccCCccccce
Q 004477 203 GAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHL 282 (751)
Q Consensus 203 ~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v 282 (751)
.......+..++|+- .+++++....-|.|.|.....++++.++ ..|.. ..
T Consensus 143 --------~~~~~~e~ne~~w~~-~nd~Fflt~GlG~v~ILsypsLkpv~si--------------------~AH~s-nC 192 (313)
T KOG1407|consen 143 --------EEQFKFEVNEISWNN-SNDLFFLTNGLGCVEILSYPSLKPVQSI--------------------KAHPS-NC 192 (313)
T ss_pred --------hhcccceeeeeeecC-CCCEEEEecCCceEEEEecccccccccc--------------------ccCCc-ce
Confidence 111345788889985 4677777777899999998888877655 33443 48
Q ss_pred EEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 004477 283 THVTFSPNGEEVLLSYSGEHVYLMDVNH 310 (751)
Q Consensus 283 t~v~fspdg~~Ll~~s~d~~I~lwdl~~ 310 (751)
.+|.|+|+|+||++|+.|..+.|||++.
T Consensus 193 icI~f~p~GryfA~GsADAlvSLWD~~E 220 (313)
T KOG1407|consen 193 ICIEFDPDGRYFATGSADALVSLWDVDE 220 (313)
T ss_pred EEEEECCCCceEeeccccceeeccChhH
Confidence 8999999999999999999999999877
No 51
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.95 E-value=3.2e-27 Score=235.17 Aligned_cols=247 Identities=19% Similarity=0.292 Sum_probs=175.4
Q ss_pred HHHHHhhhccCcCcccccccccchhhhccccccEEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCC------CCeE
Q 004477 11 IYDMLDTRHTDTRPDVNHSLQMHSSLVRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYS------SRKL 84 (751)
Q Consensus 11 ~~~~l~~r~~~~~~~~~~~l~~~~~~i~~~~~~~~L~gH~~~V~~l~~s~dg~~LaSgs~Dg~I~IWd~~------~~~~ 84 (751)
|..+|-+|++++-+.+-+.++ ..+..+--+.+.+.+|.|||++|.|+.++++||||++|..++||++. +.++
T Consensus 19 i~~FL~QR~i~~~~~~~k~F~--~~~~~R~~~qKD~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KP 96 (609)
T KOG4227|consen 19 IESFLCQREIGSVKSVVKTFR--PDFQHRPFCQKDVREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKP 96 (609)
T ss_pred eeeeeeecccCCChhhhhhhc--hhhhhcchhhhhhhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCC
Confidence 456788899998765543332 23444556777899999999999999999999999999999999975 3355
Q ss_pred EEEecccCCcceEEEEEecCCCCcEEEEEECCCcEEEEECCCCCCCCCCCCCCCCceeec--ccCCceeEEEEecCCCCE
Q 004477 85 LHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQ--CHTRRVKKLAVEVGNPHV 162 (751)
Q Consensus 85 ~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~Dg~V~vwd~~~~~~~~~~~~~~~~~~~~~--~h~~~V~~l~~sp~~~~~ 162 (751)
+......|..+|+|++|.-. +.+|++|+.+++|.+.|+++. +.+.++. ...+.|+.+..+|. .+.
T Consensus 97 I~~~~~~H~SNIF~L~F~~~--N~~~~SG~~~~~VI~HDiEt~----------qsi~V~~~~~~~~~VY~m~~~P~-DN~ 163 (609)
T KOG4227|consen 97 IGVMEHPHRSNIFSLEFDLE--NRFLYSGERWGTVIKHDIETK----------QSIYVANENNNRGDVYHMDQHPT-DNT 163 (609)
T ss_pred ceeccCccccceEEEEEccC--CeeEecCCCcceeEeeecccc----------eeeeeecccCcccceeecccCCC-Cce
Confidence 55554467799999999988 789999999999999999974 2244433 22348999999996 588
Q ss_pred EEEEeCCCcEEEEecCCCCCCCCCCCCCCccceEEEecccCceecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEE
Q 004477 163 VWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARL 242 (751)
Q Consensus 163 l~s~s~Dg~I~iwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~Iri 242 (751)
|++.+.+|.|.+||.|...... ..+ .+.........+-|+|..+.+|++.+.-+-+-+
T Consensus 164 ~~~~t~~~~V~~~D~Rd~~~~~----------~~~------------~~AN~~~~F~t~~F~P~~P~Li~~~~~~~G~~~ 221 (609)
T KOG4227|consen 164 LIVVTRAKLVSFIDNRDRQNPI----------SLV------------LPANSGKNFYTAEFHPETPALILVNSETGGPNV 221 (609)
T ss_pred EEEEecCceEEEEeccCCCCCC----------cee------------eecCCCccceeeeecCCCceeEEeccccCCCCc
Confidence 9999999999999999865220 000 011123456788999999999999999999999
Q ss_pred EeCCCCCCccccCCCCCCCCccccccccccccCCccccceEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 004477 243 YDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDV 308 (751)
Q Consensus 243 wD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~vt~v~fspdg~~Ll~~s~d~~I~lwdl 308 (751)
||+|+.... ..++ .+.+.... ......++.|+|+|+.|++--....-.+||+
T Consensus 222 ~D~R~~~~~-----------~~~~--~~~~~L~~-~~~~~M~~~~~~~G~Q~msiRR~~~P~~~D~ 273 (609)
T KOG4227|consen 222 FDRRMQARP-----------VYQR--SMFKGLPQ-ENTEWMGSLWSPSGNQFMSIRRGKCPLYFDF 273 (609)
T ss_pred eeeccccch-----------HHhh--hccccCcc-cchhhhheeeCCCCCeehhhhccCCCEEeee
Confidence 999986421 0000 00010000 0112467889999988775544333333443
No 52
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=99.95 E-value=7e-28 Score=242.03 Aligned_cols=242 Identities=19% Similarity=0.269 Sum_probs=198.3
Q ss_pred cccccEEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEecccCCcceEEEEEecCCCCcEEEEEECCCc
Q 004477 39 RLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAE 118 (751)
Q Consensus 39 ~~~~~~~L~gH~~~V~~l~~s~dg~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~Dg~ 118 (751)
.+..+..++.|...|.++.|+++|.+++||+.+|.|++|+.. ...++.+...|...|.+++|+|+ +..|+|||.|++
T Consensus 127 ~fnFEtilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpn-mnnVk~~~ahh~eaIRdlafSpn--DskF~t~SdDg~ 203 (464)
T KOG0284|consen 127 SFNFETILQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPN-MNNVKIIQAHHAEAIRDLAFSPN--DSKFLTCSDDGT 203 (464)
T ss_pred eeeHHHHhhhhcccceeEEEccCCCEEEEcCCCceEEecccc-hhhhHHhhHhhhhhhheeccCCC--CceeEEecCCCe
Confidence 344556688999999999999999999999999999999976 33445553456699999999997 899999999999
Q ss_pred EEEEECCCCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCCCCCCCCCCccceEEE
Q 004477 119 VRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILL 198 (751)
Q Consensus 119 V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~~~~~~~~~~~~l~ 198 (751)
|+|||.... +.-..+.+|.--|++++|+| ...+++++|.|..|++||.+++.+
T Consensus 204 ikiWdf~~~----------kee~vL~GHgwdVksvdWHP-~kgLiasgskDnlVKlWDprSg~c---------------- 256 (464)
T KOG0284|consen 204 IKIWDFRMP----------KEERVLRGHGWDVKSVDWHP-TKGLIASGSKDNLVKLWDPRSGSC---------------- 256 (464)
T ss_pred EEEEeccCC----------chhheeccCCCCcceeccCC-ccceeEEccCCceeEeecCCCcch----------------
Confidence 999999865 34567799999999999999 457899999999999999999874
Q ss_pred ecccCceecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCccccCCCCCCCCccccccccccccCCcc
Q 004477 199 DLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRS 278 (751)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 278 (751)
+.....|+..|..+.|+|+ +++|++++.|..+++||+|+.+.+..+ ++|.
T Consensus 257 ---------l~tlh~HKntVl~~~f~~n-~N~Llt~skD~~~kv~DiR~mkEl~~~--------------------r~Hk 306 (464)
T KOG0284|consen 257 ---------LATLHGHKNTVLAVKFNPN-GNWLLTGSKDQSCKVFDIRTMKELFTY--------------------RGHK 306 (464)
T ss_pred ---------hhhhhhccceEEEEEEcCC-CCeeEEccCCceEEEEehhHhHHHHHh--------------------hcch
Confidence 3444557888999999995 699999999999999999977654433 4565
Q ss_pred ccceEEEEEcCC-CCEEEEEeCCCcEEEEECCCCC-cceeeeecCCCceeEEeCCCCCCcccCCC
Q 004477 279 SLHLTHVTFSPN-GEEVLLSYSGEHVYLMDVNHAG-GRAMRYTVGDASKIMSFTPTLNGLELQPP 341 (751)
Q Consensus 279 ~~~vt~v~fspd-g~~Ll~~s~d~~I~lwdl~~~~-~~~~~~~~~~~~~~~~~sp~~~~~~~~~~ 341 (751)
. .|++++|+|- ...|.+|+.||.|..|.+.... ....-..+...+..++|+|-+..+.....
T Consensus 307 k-dv~~~~WhP~~~~lftsgg~Dgsvvh~~v~~~~p~~~i~~AHd~~iwsl~~hPlGhil~tgsn 370 (464)
T KOG0284|consen 307 K-DVTSLTWHPLNESLFTSGGSDGSVVHWVVGLEEPLGEIPPAHDGEIWSLAYHPLGHILATGSN 370 (464)
T ss_pred h-hheeeccccccccceeeccCCCceEEEeccccccccCCCcccccceeeeeccccceeEeecCC
Confidence 5 4999999995 4567778889999999998422 33344556777889999998776665443
No 53
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=99.95 E-value=1.8e-26 Score=235.77 Aligned_cols=250 Identities=18% Similarity=0.239 Sum_probs=204.8
Q ss_pred cccccccchhhhccccccEEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEecccCCcceEEEEEecCC
Q 004477 26 VNHSLQMHSSLVRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPET 105 (751)
Q Consensus 26 ~~~~l~~~~~~i~~~~~~~~L~gH~~~V~~l~~s~dg~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~s 105 (751)
++..+++|. ....++.+|..|+++|.+|.|+..|++|+|++.|+++.|||..++...+.+ .-|..+-.+|.|..+
T Consensus 255 ~~G~~riw~---~~G~l~~tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~~~q~f-~~~s~~~lDVdW~~~- 329 (524)
T KOG0273|consen 255 EDGEARIWN---KDGNLISTLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGTVKQQF-EFHSAPALDVDWQSN- 329 (524)
T ss_pred cCcEEEEEe---cCchhhhhhhccCCceEEEEEcCCCCEEEeccCCccEEEEeccCceEEEee-eeccCCccceEEecC-
Confidence 344455554 345567888999999999999999999999999999999999999988888 678888889999976
Q ss_pred CCcEEEEEECCCcEEEEECCCCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCCCC
Q 004477 106 SDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPP 185 (751)
Q Consensus 106 ~~~~l~sgs~Dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~ 185 (751)
..|++++.|+.|+|+-+... .|+.++.+|.+.|.+|.|.| .+.+|+|+|.|+|++||.+......
T Consensus 330 --~~F~ts~td~~i~V~kv~~~----------~P~~t~~GH~g~V~alk~n~-tg~LLaS~SdD~TlkiWs~~~~~~~-- 394 (524)
T KOG0273|consen 330 --DEFATSSTDGCIHVCKVGED----------RPVKTFIGHHGEVNALKWNP-TGSLLASCSDDGTLKIWSMGQSNSV-- 394 (524)
T ss_pred --ceEeecCCCceEEEEEecCC----------CcceeeecccCceEEEEECC-CCceEEEecCCCeeEeeecCCCcch--
Confidence 68999999999999999853 78999999999999999999 5689999999999999997765422
Q ss_pred CCCCCCccceEEEecccCceecccCCCCCccceEEEEEeCCC--------CcEEEEEeCCCeEEEEeCCCCCCccccCCC
Q 004477 186 AGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTR--------PHLLLVGGSDAFARLYDRRMLPPLTSCQKR 257 (751)
Q Consensus 186 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~--------~~~l~sgs~D~~IriwD~~~~~~~~~~~~~ 257 (751)
..+..|...|..+.|+|.+ +..+++++.|++|++||+..+.++..+
T Consensus 395 -----------------------~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f--- 448 (524)
T KOG0273|consen 395 -----------------------HDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHTL--- 448 (524)
T ss_pred -----------------------hhhhhhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCceeEee---
Confidence 2233466677777777753 468999999999999999988765443
Q ss_pred CCCCCccccccccccccCCccccceEEEEEcCCCCEEEEEeCCCcEEEEECCCCCcceeeeecCCCceeEEeCCCCCCcc
Q 004477 258 MSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVGDASKIMSFTPTLNGLE 337 (751)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~g~~~~~vt~v~fspdg~~Ll~~s~d~~I~lwdl~~~~~~~~~~~~~~~~~~~~~sp~~~~~~ 337 (751)
..|.. +|++|+|+|+|+||++|+.||.|.+|++.+++ .-..+.....+..++|+...+.+.
T Consensus 449 -----------------~kH~~-pVysvafS~~g~ylAsGs~dg~V~iws~~~~~-l~~s~~~~~~Ifel~Wn~~G~kl~ 509 (524)
T KOG0273|consen 449 -----------------MKHQE-PVYSVAFSPNGRYLASGSLDGCVHIWSTKTGK-LVKSYQGTGGIFELCWNAAGDKLG 509 (524)
T ss_pred -----------------ccCCC-ceEEEEecCCCcEEEecCCCCeeEeccccchh-eeEeecCCCeEEEEEEcCCCCEEE
Confidence 23444 69999999999999999999999999999964 334444555678889988776654
Q ss_pred cCC
Q 004477 338 LQP 340 (751)
Q Consensus 338 ~~~ 340 (751)
...
T Consensus 510 ~~~ 512 (524)
T KOG0273|consen 510 ACA 512 (524)
T ss_pred EEe
Confidence 443
No 54
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.95 E-value=2.7e-26 Score=217.58 Aligned_cols=201 Identities=16% Similarity=0.226 Sum_probs=157.6
Q ss_pred EEEEECCC-CCEEEEE-------eCCCcEEEEeCCCCeEEEEec-ccCCcceEEEEEecCCCCcEEEEEECCCcEEEEEC
Q 004477 54 NAISWNSK-GSLLISG-------SDDTHINVWSYSSRKLLHSIE-TGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNL 124 (751)
Q Consensus 54 ~~l~~s~d-g~~LaSg-------s~Dg~I~IWd~~~~~~~~~l~-~~h~~~V~~v~fsp~s~~~~l~sgs~Dg~V~vwd~ 124 (751)
.++.|||- .++||.+ ...|++.|-++...+-+..+. -.-.+.++.|+|++.. .+.+++++.||+++|||+
T Consensus 12 ysvqfSPf~~nrLavAt~q~yGl~G~G~L~ile~~~~~gi~e~~s~d~~D~LfdV~Wse~~-e~~~~~a~GDGSLrl~d~ 90 (311)
T KOG0277|consen 12 YSVQFSPFVENRLAVATAQHYGLAGNGRLFILEVTDPKGIQECQSYDTEDGLFDVAWSENH-ENQVIAASGDGSLRLFDL 90 (311)
T ss_pred ceeEecccccchhheeehhhcccccCceEEEEecCCCCCeEEEEeeecccceeEeeecCCC-cceEEEEecCceEEEecc
Confidence 37899992 2334433 247889999986444333321 1346789999999997 789999999999999997
Q ss_pred CCCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCCCCCCCCCCccceEEEecccCc
Q 004477 125 SRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGA 204 (751)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~ 204 (751)
.... .|+..++.|...|.++.|++.....++++|.|++|++||...+..
T Consensus 91 ~~~s---------~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~S---------------------- 139 (311)
T KOG0277|consen 91 TMPS---------KPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNS---------------------- 139 (311)
T ss_pred CCCC---------cchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCCcc----------------------
Confidence 6432 689999999999999999998888999999999999999877653
Q ss_pred eecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCccccCCCCCCCCccccccccccccCCccccceEE
Q 004477 205 KRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTH 284 (751)
Q Consensus 205 ~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~vt~ 284 (751)
+.++.+|...|....|+|..++++++++.|+++++||+|..-.. ...+. |. ..|.+
T Consensus 140 ---v~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~--------------~~i~a------h~-~Eil~ 195 (311)
T KOG0277|consen 140 ---VQTFNGHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGKF--------------MSIEA------HN-SEILC 195 (311)
T ss_pred ---eEeecCCccEEEEEecCCCCCCeEEEccCCceEEEEEecCCCce--------------eEEEe------cc-ceeEe
Confidence 23345578889999999999999999999999999999853211 11122 32 24999
Q ss_pred EEEcC-CCCEEEEEeCCCcEEEEECCC
Q 004477 285 VTFSP-NGEEVLLSYSGEHVYLMDVNH 310 (751)
Q Consensus 285 v~fsp-dg~~Ll~~s~d~~I~lwdl~~ 310 (751)
+.|+. +.+.|++|+.|+.|++||+++
T Consensus 196 cdw~ky~~~vl~Tg~vd~~vr~wDir~ 222 (311)
T KOG0277|consen 196 CDWSKYNHNVLATGGVDNLVRGWDIRN 222 (311)
T ss_pred ecccccCCcEEEecCCCceEEEEehhh
Confidence 99998 566788888999999999988
No 55
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.95 E-value=1.7e-26 Score=237.91 Aligned_cols=233 Identities=18% Similarity=0.257 Sum_probs=173.1
Q ss_pred cccEEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCC----eEEEEecccCCcceEEEEEecCCCCcEEEEEECC
Q 004477 41 SQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSR----KLLHSIETGHSANVFCTKFVPETSDELVVSGAGD 116 (751)
Q Consensus 41 ~~~~~L~gH~~~V~~l~~s~dg~~LaSgs~Dg~I~IWd~~~~----~~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~D 116 (751)
.....|++|+..|.++++.|.|-.|+|||.|.+|++||+... +.-..+.......|.++.|+|. +..|+..+..
T Consensus 158 shEi~l~hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~T--g~~iLvvsg~ 235 (641)
T KOG0772|consen 158 SHEIQLKHGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVT--GDQILVVSGS 235 (641)
T ss_pred cceEeccCCceEEEEeeecCCCceeeeccccceEEEEecccccccchhhhccCcccccccceeeecCC--CCeEEEEecC
Confidence 455678999999999999999999999999999999998632 2233443455667999999998 6788878888
Q ss_pred CcEEEEECCCCCCC-CCC-CCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCCCCCCCCCCccc
Q 004477 117 AEVRLFNLSRFSGR-GLD-DNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECR 194 (751)
Q Consensus 117 g~V~vwd~~~~~~~-~~~-~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~~~~~~~~~~ 194 (751)
..++|+|-...... +.. +.=+.-+..-++|...+++.+|+|.+...|+|++.||++|+||+...+.. .
T Consensus 236 aqakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q----------~ 305 (641)
T KOG0772|consen 236 AQAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQ----------L 305 (641)
T ss_pred cceeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhh----------e
Confidence 89999998743211 000 00011223446899999999999999899999999999999999876532 1
Q ss_pred eEEEecccCceecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCccccCCCCCCCCcccccccccccc
Q 004477 195 NILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSE 274 (751)
Q Consensus 195 ~~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (751)
.++.... ..+....+++|+|+|+ +.+||+|+.||.|.+||.+..... + .......|..
T Consensus 306 qVik~k~---------~~g~Rv~~tsC~~nrd-g~~iAagc~DGSIQ~W~~~~~~v~--------p---~~~vk~AH~~- 363 (641)
T KOG0772|consen 306 QVIKTKP---------AGGKRVPVTSCAWNRD-GKLIAAGCLDGSIQIWDKGSRTVR--------P---VMKVKDAHLP- 363 (641)
T ss_pred eEEeecc---------CCCcccCceeeecCCC-cchhhhcccCCceeeeecCCcccc--------c---ceEeeeccCC-
Confidence 2222111 1234578999999995 789999999999999998654311 0 1111122222
Q ss_pred CCccccceEEEEEcCCCCEEEEEeCCCcEEEEECCCC
Q 004477 275 HGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHA 311 (751)
Q Consensus 275 ~g~~~~~vt~v~fspdg~~Ll~~s~d~~I~lwdl~~~ 311 (751)
+..|++|+||+||++|++=+.|++++|||+++.
T Consensus 364 ----g~~Itsi~FS~dg~~LlSRg~D~tLKvWDLrq~ 396 (641)
T KOG0772|consen 364 ----GQDITSISFSYDGNYLLSRGFDDTLKVWDLRQF 396 (641)
T ss_pred ----CCceeEEEeccccchhhhccCCCceeeeecccc
Confidence 124999999999999999999999999999983
No 56
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=99.95 E-value=8.6e-28 Score=236.18 Aligned_cols=218 Identities=18% Similarity=0.316 Sum_probs=183.8
Q ss_pred ccccccchhhhccccccEEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEecccCCcceEEEEEecCCC
Q 004477 27 NHSLQMHSSLVRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETS 106 (751)
Q Consensus 27 ~~~l~~~~~~i~~~~~~~~L~gH~~~V~~l~~s~dg~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~s~ 106 (751)
++++++|+ ...+.+.+.|.||+|.|.|+.|. .+.|+|||.|.+|+|||+.+++++.++ .+|..+|..+.|+.
T Consensus 216 DnTikiWD--~n~~~c~~~L~GHtGSVLCLqyd--~rviisGSSDsTvrvWDv~tge~l~tl-ihHceaVLhlrf~n--- 287 (499)
T KOG0281|consen 216 DNTIKIWD--KNSLECLKILTGHTGSVLCLQYD--ERVIVSGSSDSTVRVWDVNTGEPLNTL-IHHCEAVLHLRFSN--- 287 (499)
T ss_pred cCceEEec--cccHHHHHhhhcCCCcEEeeecc--ceEEEecCCCceEEEEeccCCchhhHH-hhhcceeEEEEEeC---
Confidence 57777877 46677899999999999999996 459999999999999999999999998 79999999999984
Q ss_pred CcEEEEEECCCcEEEEECCCCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCCCCC
Q 004477 107 DELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPA 186 (751)
Q Consensus 107 ~~~l~sgs~Dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~~ 186 (751)
.+++|+|.|.+|.|||+..+.. ..+.+++.+|...|+.+.|+ .++++|+|.|.+|++|++.+.+..
T Consensus 288 -g~mvtcSkDrsiaVWdm~sps~-------it~rrVLvGHrAaVNvVdfd---~kyIVsASgDRTikvW~~st~efv--- 353 (499)
T KOG0281|consen 288 -GYMVTCSKDRSIAVWDMASPTD-------ITLRRVLVGHRAAVNVVDFD---DKYIVSASGDRTIKVWSTSTCEFV--- 353 (499)
T ss_pred -CEEEEecCCceeEEEeccCchH-------HHHHHHHhhhhhheeeeccc---cceEEEecCCceEEEEeccceeee---
Confidence 4999999999999999987542 24567889999999999995 369999999999999999987632
Q ss_pred CCCCCccceEEEecccCceecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCccccCCCCCCCCcccc
Q 004477 187 GSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNY 266 (751)
Q Consensus 187 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~~~~~~~~~~~~~~~~ 266 (751)
....+|.-.|.|+.+. ++++++|+.|.+||+||+..+..+. .
T Consensus 354 ----------------------Rtl~gHkRGIAClQYr---~rlvVSGSSDntIRlwdi~~G~cLR-------------v 395 (499)
T KOG0281|consen 354 ----------------------RTLNGHKRGIACLQYR---DRLVVSGSSDNTIRLWDIECGACLR-------------V 395 (499)
T ss_pred ----------------------hhhhcccccceehhcc---CeEEEecCCCceEEEEeccccHHHH-------------H
Confidence 3344567778777774 6899999999999999999876443 3
Q ss_pred ccccccccCCccccceEEEEEcCCCCEEEEEeCCCcEEEEECCCCCcc
Q 004477 267 FCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGR 314 (751)
Q Consensus 267 ~~~~~~~~~g~~~~~vt~v~fspdg~~Ll~~s~d~~I~lwdl~~~~~~ 314 (751)
+ .||... |.++.|. .+.+++|+.||+|++||+..+..+
T Consensus 396 L-------eGHEeL-vRciRFd--~krIVSGaYDGkikvWdl~aaldp 433 (499)
T KOG0281|consen 396 L-------EGHEEL-VRCIRFD--NKRIVSGAYDGKIKVWDLQAALDP 433 (499)
T ss_pred H-------hchHHh-hhheeec--CceeeeccccceEEEEecccccCC
Confidence 3 566663 8899984 678999999999999999986544
No 57
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.95 E-value=1.8e-26 Score=250.53 Aligned_cols=277 Identities=20% Similarity=0.233 Sum_probs=216.8
Q ss_pred ccccccchhhhccccccEEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEecccCCcceEEEEEecCCC
Q 004477 27 NHSLQMHSSLVRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETS 106 (751)
Q Consensus 27 ~~~l~~~~~~i~~~~~~~~L~gH~~~V~~l~~s~dg~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~s~ 106 (751)
...++.|+-...+ ++..+.+|.|+|..+.|+|++.+++||++|.+|+||++++.+++.++ .||-+.|..+.|++.
T Consensus 30 sG~IQlWDYRM~t--li~rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~rrclftL-~GHlDYVRt~~FHhe-- 104 (1202)
T KOG0292|consen 30 SGVIQLWDYRMGT--LIDRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKTRRCLFTL-LGHLDYVRTVFFHHE-- 104 (1202)
T ss_pred Cceeeeehhhhhh--HHhhhhccCCccceeeecCCCCeEEecCCccEEEEEecccceehhhh-ccccceeEEeeccCC--
Confidence 4567777765544 68889999999999999999999999999999999999999999999 899999999999999
Q ss_pred CcEEEEEECCCcEEEEECCCCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCCCCC
Q 004477 107 DELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPA 186 (751)
Q Consensus 107 ~~~l~sgs~Dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~~ 186 (751)
-..|+|+|.|.+|+||+..+. +++.++.+|+..|.|..|+| ...+++|+|-|.+||+||+..-+.....
T Consensus 105 yPWIlSASDDQTIrIWNwqsr----------~~iavltGHnHYVMcAqFhp-tEDlIVSaSLDQTVRVWDisGLRkk~~~ 173 (1202)
T KOG0292|consen 105 YPWILSASDDQTIRIWNWQSR----------KCIAVLTGHNHYVMCAQFHP-TEDLIVSASLDQTVRVWDISGLRKKNKA 173 (1202)
T ss_pred CceEEEccCCCeEEEEeccCC----------ceEEEEecCceEEEeeccCC-ccceEEEecccceEEEEeecchhccCCC
Confidence 689999999999999999975 67999999999999999999 4579999999999999998764332111
Q ss_pred CCC-CC--ccceEEEeccc-CceecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCccccCCCCCCCC
Q 004477 187 GSS-HQ--ECRNILLDLRC-GAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPP 262 (751)
Q Consensus 187 ~~~-~~--~~~~~l~~~~~-~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~~~~~~~~~~~~ 262 (751)
... .. .....-.++.. ..........+|.-.|+-++|+|. -.+|++|+.|..|++|.+...+.- .
T Consensus 174 pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpT-lpliVSG~DDRqVKlWrmnetKaW-E--------- 242 (1202)
T KOG0292|consen 174 PGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPT-LPLIVSGADDRQVKLWRMNETKAW-E--------- 242 (1202)
T ss_pred CCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCC-cceEEecCCcceeeEEEeccccce-e---------
Confidence 110 00 00000000100 011122335678889999999996 579999999999999988754310 0
Q ss_pred ccccccccccccCCccccceEEEEEcCCCCEEEEEeCCCcEEEEECCCCCcceeeeecCCCceeEEeCCCCCCcccC
Q 004477 263 CVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVGDASKIMSFTPTLNGLELQ 339 (751)
Q Consensus 263 ~~~~~~~~~~~~~g~~~~~vt~v~fspdg~~Ll~~s~d~~I~lwdl~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~ 339 (751)
+ .- -+||.+ .|+++-|+|..+.+++++.|+.|+|||++.......+....+.-..++.+|..+-.+..
T Consensus 243 -v-Dt------crgH~n-nVssvlfhp~q~lIlSnsEDksirVwDm~kRt~v~tfrrendRFW~laahP~lNLfAAg 310 (1202)
T KOG0292|consen 243 -V-DT------CRGHYN-NVSSVLFHPHQDLILSNSEDKSIRVWDMTKRTSVQTFRRENDRFWILAAHPELNLFAAG 310 (1202)
T ss_pred -e-hh------hhcccC-CcceEEecCccceeEecCCCccEEEEecccccceeeeeccCCeEEEEEecCCcceeeee
Confidence 0 01 156666 59999999999999999999999999999976666665666677788888888766544
No 58
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=3e-26 Score=214.86 Aligned_cols=256 Identities=22% Similarity=0.288 Sum_probs=212.7
Q ss_pred ccccccccchhhhccccccEEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEecccCCcceEEEEEecC
Q 004477 25 DVNHSLQMHSSLVRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPE 104 (751)
Q Consensus 25 ~~~~~l~~~~~~i~~~~~~~~L~gH~~~V~~l~~s~dg~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~ 104 (751)
..++.++.|... +..+++++.||..+|..++.+.|...+++|+.|+.|.+||+.+|+.+..+ .+|.+.|+.|+|+.+
T Consensus 36 GsdrtvrLWNp~--rg~liktYsghG~EVlD~~~s~Dnskf~s~GgDk~v~vwDV~TGkv~Rr~-rgH~aqVNtV~fNee 112 (307)
T KOG0316|consen 36 GSDRTVRLWNPL--RGALIKTYSGHGHEVLDAALSSDNSKFASCGGDKAVQVWDVNTGKVDRRF-RGHLAQVNTVRFNEE 112 (307)
T ss_pred CCCceEEeeccc--ccceeeeecCCCceeeeccccccccccccCCCCceEEEEEcccCeeeeec-ccccceeeEEEecCc
Confidence 457888988854 56689999999999999999999999999999999999999999999999 899999999999998
Q ss_pred CCCcEEEEEECCCcEEEEECCCCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCCC
Q 004477 105 TSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCP 184 (751)
Q Consensus 105 s~~~~l~sgs~Dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~ 184 (751)
...+++|+.|.+|++||.+... .+|++.+..-.+.|.+|..+ .+.|++|+-||++|.||+|.++...
T Consensus 113 --sSVv~SgsfD~s~r~wDCRS~s--------~ePiQildea~D~V~Si~v~---~heIvaGS~DGtvRtydiR~G~l~s 179 (307)
T KOG0316|consen 113 --SSVVASGSFDSSVRLWDCRSRS--------FEPIQILDEAKDGVSSIDVA---EHEIVAGSVDGTVRTYDIRKGTLSS 179 (307)
T ss_pred --ceEEEeccccceeEEEEcccCC--------CCccchhhhhcCceeEEEec---ccEEEeeccCCcEEEEEeecceeeh
Confidence 5899999999999999998653 37899999999999999985 4789999999999999999987331
Q ss_pred CCCCCCCccceEEEecccCceecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCccccCCCCCCCCcc
Q 004477 185 PAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCV 264 (751)
Q Consensus 185 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~~~~~~~~~~~~~~ 264 (751)
.....+|+|++|++ +++..++++.|+++|+.|..+++.+.++
T Consensus 180 ---------------------------Dy~g~pit~vs~s~-d~nc~La~~l~stlrLlDk~tGklL~sY---------- 221 (307)
T KOG0316|consen 180 ---------------------------DYFGHPITSVSFSK-DGNCSLASSLDSTLRLLDKETGKLLKSY---------- 221 (307)
T ss_pred ---------------------------hhcCCcceeEEecC-CCCEEEEeeccceeeecccchhHHHHHh----------
Confidence 11245899999999 5899999999999999999998866554
Q ss_pred ccccccccccCCcccc-ceEEEEEcCCCCEEEEEeCCCcEEEEECCCCCcceeeeecCCC-ceeEEeCCCCCCcccCCCc
Q 004477 265 NYFCPMHLSEHGRSSL-HLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVGDA-SKIMSFTPTLNGLELQPPI 342 (751)
Q Consensus 265 ~~~~~~~~~~~g~~~~-~vt~v~fspdg~~Ll~~s~d~~I~lwdl~~~~~~~~~~~~~~~-~~~~~~sp~~~~~~~~~~~ 342 (751)
.||.+. .-..++++.....+++|+.||.|++||+.+.........+..+ +..+.++|.......+...
T Consensus 222 ----------kGhkn~eykldc~l~qsdthV~sgSEDG~Vy~wdLvd~~~~sk~~~~~~v~v~dl~~hp~~~~f~~A~~~ 291 (307)
T KOG0316|consen 222 ----------KGHKNMEYKLDCCLNQSDTHVFSGSEDGKVYFWDLVDETQISKLSVVSTVIVTDLSCHPTMDDFITATGH 291 (307)
T ss_pred ----------cccccceeeeeeeecccceeEEeccCCceEEEEEeccceeeeeeccCCceeEEeeecccCccceeEecCC
Confidence 223221 1345678888889999999999999999997655555544555 6678888887766555444
Q ss_pred cc
Q 004477 343 HD 344 (751)
Q Consensus 343 ~~ 344 (751)
..
T Consensus 292 ~~ 293 (307)
T KOG0316|consen 292 GD 293 (307)
T ss_pred ce
Confidence 33
No 59
>PTZ00421 coronin; Provisional
Probab=99.95 E-value=1.6e-25 Score=248.39 Aligned_cols=232 Identities=17% Similarity=0.278 Sum_probs=174.7
Q ss_pred EEeccCCCcEEEEEECC-CCCEEEEEeCCCcEEEEeCCCCe-------EEEEecccCCcceEEEEEecCCCCcEEEEEEC
Q 004477 44 RELEGHQGCVNAISWNS-KGSLLISGSDDTHINVWSYSSRK-------LLHSIETGHSANVFCTKFVPETSDELVVSGAG 115 (751)
Q Consensus 44 ~~L~gH~~~V~~l~~s~-dg~~LaSgs~Dg~I~IWd~~~~~-------~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~ 115 (751)
..|.||++.|++++|+| ++++||||+.|++|+|||+.++. .+..+ .+|...|.+++|+|.. +.+|++|+.
T Consensus 69 ~~l~GH~~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L-~gH~~~V~~l~f~P~~-~~iLaSgs~ 146 (493)
T PTZ00421 69 PILLGQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHL-QGHTKKVGIVSFHPSA-MNVLASAGA 146 (493)
T ss_pred ceEeCCCCCEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCccccccCcceEEe-cCCCCcEEEEEeCcCC-CCEEEEEeC
Confidence 35889999999999999 88999999999999999987642 45566 7999999999999984 479999999
Q ss_pred CCcEEEEECCCCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCCCCCCCCCCccce
Q 004477 116 DAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRN 195 (751)
Q Consensus 116 Dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~~~~~~~~~~~ 195 (751)
|++|+|||+..+ ..+..+.+|...|.+++|+| ++.+|++++.||+|++||+++++..
T Consensus 147 DgtVrIWDl~tg----------~~~~~l~~h~~~V~sla~sp-dG~lLatgs~Dg~IrIwD~rsg~~v------------ 203 (493)
T PTZ00421 147 DMVVNVWDVERG----------KAVEVIKCHSDQITSLEWNL-DGSLLCTTSKDKKLNIIDPRDGTIV------------ 203 (493)
T ss_pred CCEEEEEECCCC----------eEEEEEcCCCCceEEEEEEC-CCCEEEEecCCCEEEEEECCCCcEE------------
Confidence 999999999864 45678889999999999999 6789999999999999999987522
Q ss_pred EEEecccCceecccCCCCCc-cceEEEEEeCCCCcEEEEEe----CCCeEEEEeCCCCCCccccCCCCCCCCcccccccc
Q 004477 196 ILLDLRCGAKRSLADPPKQT-LSLKSCDISSTRPHLLLVGG----SDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPM 270 (751)
Q Consensus 196 ~l~~~~~~~~~~~~~~~~~~-~~v~~i~~sp~~~~~l~sgs----~D~~IriwD~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (751)
..+ ..|. ..+..+.|.+.+ ..+++++ .|+.|++||+++..... ...
T Consensus 204 --~tl-----------~~H~~~~~~~~~w~~~~-~~ivt~G~s~s~Dr~VklWDlr~~~~p~------------~~~--- 254 (493)
T PTZ00421 204 --SSV-----------EAHASAKSQRCLWAKRK-DLIITLGCSKSQQRQIMLWDTRKMASPY------------STV--- 254 (493)
T ss_pred --EEE-----------ecCCCCcceEEEEcCCC-CeEEEEecCCCCCCeEEEEeCCCCCCce------------eEe---
Confidence 000 1122 123456788854 4555443 48999999998754210 000
Q ss_pred ccccCCccccceEEEEEcCCCCEEEEEe-CCCcEEEEECCCCCccee-eeecCCCceeEEeCCCC
Q 004477 271 HLSEHGRSSLHLTHVTFSPNGEEVLLSY-SGEHVYLMDVNHAGGRAM-RYTVGDASKIMSFTPTL 333 (751)
Q Consensus 271 ~~~~~g~~~~~vt~v~fspdg~~Ll~~s-~d~~I~lwdl~~~~~~~~-~~~~~~~~~~~~~sp~~ 333 (751)
..+....+....|++++++|++++ .|+.|++||+.++..... .+....+.+.++|.|..
T Consensus 255 ----~~d~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~~~~~~~~~s~~~~~g~~~~pk~ 315 (493)
T PTZ00421 255 ----DLDQSSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNERLTFCSSYSSVEPHKGLCMMPKW 315 (493)
T ss_pred ----ccCCCCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCCceEEEeeccCCCCCcceEecccc
Confidence 001112366678999999999887 599999999998653322 23344566777777753
No 60
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.94 E-value=4.3e-25 Score=236.72 Aligned_cols=236 Identities=20% Similarity=0.322 Sum_probs=188.0
Q ss_pred EEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEecccCCcceEEEEEecCCCCcEEEEEECCCcEEEEE
Q 004477 44 RELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFN 123 (751)
Q Consensus 44 ~~L~gH~~~V~~l~~s~dg~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~Dg~V~vwd 123 (751)
.++.||...|.++++|.+...++||+. +.|+||+..+.+++.++. .+.+.+..|.|. ++++++|...|.+.|||
T Consensus 367 i~~~GHR~dVRsl~vS~d~~~~~Sga~-~SikiWn~~t~kciRTi~---~~y~l~~~Fvpg--d~~Iv~G~k~Gel~vfd 440 (888)
T KOG0306|consen 367 IEIGGHRSDVRSLCVSSDSILLASGAG-ESIKIWNRDTLKCIRTIT---CGYILASKFVPG--DRYIVLGTKNGELQVFD 440 (888)
T ss_pred eeeccchhheeEEEeecCceeeeecCC-CcEEEEEccCcceeEEec---cccEEEEEecCC--CceEEEeccCCceEEEE
Confidence 457799999999999999999999876 489999999999999993 338999999999 89999999999999999
Q ss_pred CCCCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCCCCCCCCCCccceEEEecccC
Q 004477 124 LSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCG 203 (751)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~~~~~~~~~~~~l~~~~~~ 203 (751)
+... ..+.+...|.+.|++++.+| ++.-+++||.|.+|++||+.-.... ....+.+..+...
T Consensus 441 laS~----------~l~Eti~AHdgaIWsi~~~p-D~~g~vT~saDktVkfWdf~l~~~~-------~gt~~k~lsl~~~ 502 (888)
T KOG0306|consen 441 LASA----------SLVETIRAHDGAIWSISLSP-DNKGFVTGSADKTVKFWDFKLVVSV-------PGTQKKVLSLKHT 502 (888)
T ss_pred eehh----------hhhhhhhccccceeeeeecC-CCCceEEecCCcEEEEEeEEEEecc-------Ccccceeeeeccc
Confidence 9864 45777889999999999999 5678889999999999998643311 0011111111111
Q ss_pred ceecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCccccCCCCCCCCccccccccccccCCccccceE
Q 004477 204 AKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLT 283 (751)
Q Consensus 204 ~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~vt 283 (751)
... .-...|-|+.+|| ++++|+++--|++|+||-+.+++-. +...||.- +|.
T Consensus 503 rtL------el~ddvL~v~~Sp-dgk~LaVsLLdnTVkVyflDtlKFf--------------------lsLYGHkL-PV~ 554 (888)
T KOG0306|consen 503 RTL------ELEDDVLCVSVSP-DGKLLAVSLLDNTVKVYFLDTLKFF--------------------LSLYGHKL-PVL 554 (888)
T ss_pred eEE------eccccEEEEEEcC-CCcEEEEEeccCeEEEEEecceeee--------------------eeeccccc-cee
Confidence 111 1245789999999 5899999999999999999876532 12256765 899
Q ss_pred EEEEcCCCCEEEEEeCCCcEEEEECCCCCcceeeeecCCCceeEEeCC
Q 004477 284 HVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVGDASKIMSFTP 331 (751)
Q Consensus 284 ~v~fspdg~~Ll~~s~d~~I~lwdl~~~~~~~~~~~~~~~~~~~~~sp 331 (751)
++..|||++.+++|+.|..|++|-++-|.+..-.+.|.+.+..+.|-|
T Consensus 555 smDIS~DSklivTgSADKnVKiWGLdFGDCHKS~fAHdDSvm~V~F~P 602 (888)
T KOG0306|consen 555 SMDISPDSKLIVTGSADKNVKIWGLDFGDCHKSFFAHDDSVMSVQFLP 602 (888)
T ss_pred EEeccCCcCeEEeccCCCceEEeccccchhhhhhhcccCceeEEEEcc
Confidence 999999999999999999999999998776666666666666666655
No 61
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.94 E-value=2.3e-24 Score=205.93 Aligned_cols=238 Identities=20% Similarity=0.321 Sum_probs=190.4
Q ss_pred EeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEecccCCcceEEEEEecCCCCcEEEEEECCCcEEEEEC
Q 004477 45 ELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNL 124 (751)
Q Consensus 45 ~L~gH~~~V~~l~~s~dg~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~Dg~V~vwd~ 124 (751)
.|+||..+++.|.++.+|.+|.||+.|.++.||-..+|+.+.++ .||++.|+|+...-+ .+.++||+.|.+++|||+
T Consensus 5 ~l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGerlGty-~GHtGavW~~Did~~--s~~liTGSAD~t~kLWDv 81 (327)
T KOG0643|consen 5 LLQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGERLGTY-DGHTGAVWCCDIDWD--SKHLITGSADQTAKLWDV 81 (327)
T ss_pred ccccCccccceEEecCCCcEEEEecCCCCceEEEecCCceeeee-cCCCceEEEEEecCC--cceeeeccccceeEEEEc
Confidence 47899999999999999999999999999999999899999999 899999999999988 489999999999999999
Q ss_pred CCCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeC-----CCcEEEEecCCCCCCCCCCCCCCccceEEEe
Q 004477 125 SRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASE-----DGTLRQHDFRQGSSCPPAGSSHQECRNILLD 199 (751)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~-----Dg~I~iwDlr~~~~~~~~~~~~~~~~~~l~~ 199 (751)
.++ +.+..++ -..+|+.+.|++ ++++++.+.+ -+.|.++|++...... ...++
T Consensus 82 ~tG----------k~la~~k-~~~~Vk~~~F~~-~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~----~s~ep------ 139 (327)
T KOG0643|consen 82 ETG----------KQLATWK-TNSPVKRVDFSF-GGNLILASTDKQMGYTCFVSVFDIRDDSSDI----DSEEP------ 139 (327)
T ss_pred CCC----------cEEEEee-cCCeeEEEeecc-CCcEEEEEehhhcCcceEEEEEEccCChhhh----cccCc------
Confidence 976 4455555 577899999999 6677666544 3678999998654210 00111
Q ss_pred cccCceecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCccccCCCCCCCCccccccccccccCCccc
Q 004477 200 LRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSS 279 (751)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 279 (751)
+...+.+...++.+-|.|. +.+|++|..||.|.+||++++..+.... .-|..
T Consensus 140 --------~~kI~t~~skit~a~Wg~l-~~~ii~Ghe~G~is~~da~~g~~~v~s~-------------------~~h~~ 191 (327)
T KOG0643|consen 140 --------YLKIPTPDSKITSALWGPL-GETIIAGHEDGSISIYDARTGKELVDSD-------------------EEHSS 191 (327)
T ss_pred --------eEEecCCccceeeeeeccc-CCEEEEecCCCcEEEEEcccCceeeech-------------------hhhcc
Confidence 1111224477899999995 7999999999999999999875332110 11333
Q ss_pred cceEEEEEcCCCCEEEEEeCCCcEEEEECCCCCcceeeeecCCCceeEEeCCCCCCcc
Q 004477 280 LHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVGDASKIMSFTPTLNGLE 337 (751)
Q Consensus 280 ~~vt~v~fspdg~~Ll~~s~d~~I~lwdl~~~~~~~~~~~~~~~~~~~~~sp~~~~~~ 337 (751)
.|+.+.|+||..++++++.|.+-+|||+.+. .....|....+++..+++|..+.+.
T Consensus 192 -~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl-~v~Kty~te~PvN~aaisP~~d~Vi 247 (327)
T KOG0643|consen 192 -KINDLQFSRDRTYFITGSKDTTAKLVDVRTL-EVLKTYTTERPVNTAAISPLLDHVI 247 (327)
T ss_pred -ccccccccCCcceEEecccCccceeeeccce-eeEEEeeecccccceecccccceEE
Confidence 5999999999999999999999999999994 4566777788888888888765443
No 62
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.94 E-value=6.5e-26 Score=215.02 Aligned_cols=225 Identities=18% Similarity=0.312 Sum_probs=190.2
Q ss_pred ccccccchhhhccccccEEeccCCCcEEEEEECC-CCCEEEEEeCCCcEEEEeCCCCeEEEEecccCCcceEEEEEecCC
Q 004477 27 NHSLQMHSSLVRRLSQERELEGHQGCVNAISWNS-KGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPET 105 (751)
Q Consensus 27 ~~~l~~~~~~i~~~~~~~~L~gH~~~V~~l~~s~-dg~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~s 105 (751)
+.+|++++ ....-++++.++.|+.+|.++.|++ .++.++++|.|++|+||+...+..+.++ .||...|..++|+|..
T Consensus 82 DGSLrl~d-~~~~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~Sv~Tf-~gh~~~Iy~a~~sp~~ 159 (311)
T KOG0277|consen 82 DGSLRLFD-LTMPSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNSVQTF-NGHNSCIYQAAFSPHI 159 (311)
T ss_pred CceEEEec-cCCCCcchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCCcceEee-cCCccEEEEEecCCCC
Confidence 57888888 5566679999999999999999998 5678888899999999999999999999 8999999999999997
Q ss_pred CCcEEEEEECCCcEEEEECCCCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCCCC
Q 004477 106 SDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPP 185 (751)
Q Consensus 106 ~~~~l~sgs~Dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~ 185 (751)
+++++++|.|+++++||++.. + + ...+..|...+.++.|+.-+.++++||+.|+.||+||+|.-+..
T Consensus 160 -~nlfas~Sgd~~l~lwdvr~~-g--------k-~~~i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r~p-- 226 (311)
T KOG0277|consen 160 -PNLFASASGDGTLRLWDVRSP-G--------K-FMSIEAHNSEILCCDWSKYNHNVLATGGVDNLVRGWDIRNLRTP-- 226 (311)
T ss_pred -CCeEEEccCCceEEEEEecCC-C--------c-eeEEEeccceeEeecccccCCcEEEecCCCceEEEEehhhcccc--
Confidence 799999999999999999865 3 2 23488899999999999989999999999999999999986532
Q ss_pred CCCCCCccceEEEecccCceecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCccccCCCCCCCCccc
Q 004477 186 AGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVN 265 (751)
Q Consensus 186 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~~~~~~~~~~~~~~~ 265 (751)
+....+|...|..++|+|....+|++++.|-++||||...... ++.
T Consensus 227 ----------------------l~eL~gh~~AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~ds------------~~e 272 (311)
T KOG0277|consen 227 ----------------------LFELNGHGLAVRKVKFSPHHASLLASASYDMTVRIWDPERQDS------------AIE 272 (311)
T ss_pred ----------------------ceeecCCceEEEEEecCcchhhHhhhccccceEEecccccchh------------hhh
Confidence 3334558899999999998888999999999999999875431 122
Q ss_pred cccccccccCCccccceEEEEEcC-CCCEEEEEeCCCcEEEEEC
Q 004477 266 YFCPMHLSEHGRSSLHLTHVTFSP-NGEEVLLSYSGEHVYLMDV 308 (751)
Q Consensus 266 ~~~~~~~~~~g~~~~~vt~v~fsp-dg~~Ll~~s~d~~I~lwdl 308 (751)
.+ ..|+. -|..+.||+ ++.+++..+-|+.++||+.
T Consensus 273 ~~-------~~HtE-Fv~g~Dws~~~~~~vAs~gWDe~l~Vw~p 308 (311)
T KOG0277|consen 273 TV-------DHHTE-FVCGLDWSLFDPGQVASTGWDELLYVWNP 308 (311)
T ss_pred hh-------hccce-EEeccccccccCceeeecccccceeeecc
Confidence 21 12333 488999998 5678888888999999984
No 63
>PLN00181 protein SPA1-RELATED; Provisional
Probab=99.93 E-value=2.8e-24 Score=256.71 Aligned_cols=188 Identities=15% Similarity=0.235 Sum_probs=142.1
Q ss_pred CCcEEEEeCCCCeEEEEec----ccCCcceEEEEEecCCCCcEEEEEECCCcEEEEECCCCCCCCCCCCCCCCceeeccc
Q 004477 71 DTHINVWSYSSRKLLHSIE----TGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCH 146 (751)
Q Consensus 71 Dg~I~IWd~~~~~~~~~l~----~~h~~~V~~v~fsp~s~~~~l~sgs~Dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h 146 (751)
+|.+++|+..+......+. ..|.+.|.+++|+|+ +++|+||+.|++|+||++........ ....+...+. +
T Consensus 457 ~gl~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~fs~d--g~~latgg~D~~I~iwd~~~~~~~~~--~~~~~~~~~~-~ 531 (793)
T PLN00181 457 EGLCKYLSFSKLRVKADLKQGDLLNSSNLVCAIGFDRD--GEFFATAGVNKKIKIFECESIIKDGR--DIHYPVVELA-S 531 (793)
T ss_pred hhhhhhhcccceEEEEeeccccccCCCCcEEEEEECCC--CCEEEEEeCCCEEEEEECCccccccc--ccccceEEec-c
Confidence 7789999988665544432 348999999999999 89999999999999999864210000 0001233333 4
Q ss_pred CCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCCCCCCCCCCccceEEEecccCceecccCCCCCccceEEEEEeCC
Q 004477 147 TRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISST 226 (751)
Q Consensus 147 ~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~ 226 (751)
...|.+++|+|..+.+|++++.||+|++||+.+++.. .....|...|++++|+|.
T Consensus 532 ~~~v~~l~~~~~~~~~las~~~Dg~v~lWd~~~~~~~-------------------------~~~~~H~~~V~~l~~~p~ 586 (793)
T PLN00181 532 RSKLSGICWNSYIKSQVASSNFEGVVQVWDVARSQLV-------------------------TEMKEHEKRVWSIDYSSA 586 (793)
T ss_pred cCceeeEEeccCCCCEEEEEeCCCeEEEEECCCCeEE-------------------------EEecCCCCCEEEEEEcCC
Confidence 5679999999877789999999999999999876421 112347788999999986
Q ss_pred CCcEEEEEeCCCeEEEEeCCCCCCccccCCCCCCCCccccccccccccCCccccceEEEEEc-CCCCEEEEEeCCCcEEE
Q 004477 227 RPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFS-PNGEEVLLSYSGEHVYL 305 (751)
Q Consensus 227 ~~~~l~sgs~D~~IriwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~vt~v~fs-pdg~~Ll~~s~d~~I~l 305 (751)
++.+|++|+.|+.|++||+++...+..+ ..+ ..|+++.|+ ++|.+|++|+.|+.|++
T Consensus 587 ~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~--------------------~~~--~~v~~v~~~~~~g~~latgs~dg~I~i 644 (793)
T PLN00181 587 DPTLLASGSDDGSVKLWSINQGVSIGTI--------------------KTK--ANICCVQFPSESGRSLAFGSADHKVYY 644 (793)
T ss_pred CCCEEEEEcCCCEEEEEECCCCcEEEEE--------------------ecC--CCeEEEEEeCCCCCEEEEEeCCCeEEE
Confidence 7889999999999999999876433221 111 148899995 57999999999999999
Q ss_pred EECCC
Q 004477 306 MDVNH 310 (751)
Q Consensus 306 wdl~~ 310 (751)
||+.+
T Consensus 645 wD~~~ 649 (793)
T PLN00181 645 YDLRN 649 (793)
T ss_pred EECCC
Confidence 99876
No 64
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.93 E-value=4.2e-24 Score=231.81 Aligned_cols=247 Identities=15% Similarity=0.187 Sum_probs=185.9
Q ss_pred ccccccEEeccCCCcEEEEEECCCCC-EEEEEeCCCcEEEEeCCCCeEEEEecccCCcceEEEEEecCCCCcEEEEEECC
Q 004477 38 RRLSQERELEGHQGCVNAISWNSKGS-LLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGD 116 (751)
Q Consensus 38 ~~~~~~~~L~gH~~~V~~l~~s~dg~-~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~D 116 (751)
+.-+.+.+++.-.+.|+.++|..||+ +||+|+..|.+.+||++..+.+..+...|.+.|..+.|.|. ...++|++.|
T Consensus 232 K~dkil~sFk~d~g~VtslSFrtDG~p~las~~~~G~m~~wDLe~kkl~~v~~nah~~sv~~~~fl~~--epVl~ta~~D 309 (910)
T KOG1539|consen 232 KFDKILMSFKQDWGRVTSLSFRTDGNPLLASGRSNGDMAFWDLEKKKLINVTRNAHYGSVTGATFLPG--EPVLVTAGAD 309 (910)
T ss_pred ccCcEEEEEEccccceeEEEeccCCCeeEEeccCCceEEEEEcCCCeeeeeeeccccCCcccceecCC--CceEeeccCC
Confidence 33455667775569999999999997 77788888999999999998888887799999999999999 6899999999
Q ss_pred CcEEEEECCCCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCCCC-----------
Q 004477 117 AEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPP----------- 185 (751)
Q Consensus 117 g~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~----------- 185 (751)
..+++|=.+++.+.. +.++.-.||..+..+|.|.-..++.+.+++.|++++.+++........
T Consensus 310 nSlk~~vfD~~dg~p------R~LR~R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~k 383 (910)
T KOG1539|consen 310 NSLKVWVFDSGDGVP------RLLRSRGGHSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAK 383 (910)
T ss_pred CceeEEEeeCCCCcc------hheeeccCCCCCchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhcccccccccc
Confidence 999999888766543 557777899999999999876889999999999999998764321100
Q ss_pred -CCCC-------------------C-----------CccceEEEecccCceecccCCC----CCccceEEEEEeCCCCcE
Q 004477 186 -AGSS-------------------H-----------QECRNILLDLRCGAKRSLADPP----KQTLSLKSCDISSTRPHL 230 (751)
Q Consensus 186 -~~~~-------------------~-----------~~~~~~l~~~~~~~~~~~~~~~----~~~~~v~~i~~sp~~~~~ 230 (751)
.... . .......|+++..........+ +....++++++++ .|++
T Consensus 384 k~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~-CGNF 462 (910)
T KOG1539|consen 384 KVNVFSTEKLKLPPIVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSF-CGNF 462 (910)
T ss_pred cccccchhhhcCCcceeeecccchhhhhcceeEEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEec-cCce
Confidence 0000 0 0011123443332221111111 2456789999999 5899
Q ss_pred EEEEeCCCeEEEEeCCCCCCccccCCCCCCCCccccccccccccCCccccceEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 004477 231 LLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNH 310 (751)
Q Consensus 231 l~sgs~D~~IriwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~vt~v~fspdg~~Ll~~s~d~~I~lwdl~~ 310 (751)
.+.|...|.|-+|++.++-...++.. . ..|. .+|++++...-++.+++++.+|.+.+||+.+
T Consensus 463 ~~IG~S~G~Id~fNmQSGi~r~sf~~-----------~------~ah~-~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~ 524 (910)
T KOG1539|consen 463 VFIGYSKGTIDRFNMQSGIHRKSFGD-----------S------PAHK-GEVTGLAVDGTNRLLVSAGADGILKFWDFKK 524 (910)
T ss_pred EEEeccCCeEEEEEcccCeeeccccc-----------C------cccc-CceeEEEecCCCceEEEccCcceEEEEecCC
Confidence 99999999999999998754433310 0 1232 3699999999999999999999999999998
Q ss_pred C
Q 004477 311 A 311 (751)
Q Consensus 311 ~ 311 (751)
.
T Consensus 525 k 525 (910)
T KOG1539|consen 525 K 525 (910)
T ss_pred c
Confidence 4
No 65
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.93 E-value=4.6e-25 Score=231.91 Aligned_cols=253 Identities=15% Similarity=0.214 Sum_probs=211.1
Q ss_pred cccccccchhhhccccccEEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEecccCCcceEEEEEecCC
Q 004477 26 VNHSLQMHSSLVRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPET 105 (751)
Q Consensus 26 ~~~~l~~~~~~i~~~~~~~~L~gH~~~V~~l~~s~dg~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~s 105 (751)
+...+++|....+. .++.++--.-+|.+..|-+-.+.+++|++|..|+|+++.++..++.| ..|.+.|.|++.+|.
T Consensus 33 ynG~V~IWnyetqt--mVksfeV~~~PvRa~kfiaRknWiv~GsDD~~IrVfnynt~ekV~~F-eAH~DyIR~iavHPt- 108 (794)
T KOG0276|consen 33 YNGDVQIWNYETQT--MVKSFEVSEVPVRAAKFIARKNWIVTGSDDMQIRVFNYNTGEKVKTF-EAHSDYIRSIAVHPT- 108 (794)
T ss_pred ecCeeEEEecccce--eeeeeeecccchhhheeeeccceEEEecCCceEEEEecccceeeEEe-eccccceeeeeecCC-
Confidence 57888998865554 57777777889999999999999999999999999999999999999 899999999999999
Q ss_pred CCcEEEEEECCCcEEEEECCCCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCCCC
Q 004477 106 SDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPP 185 (751)
Q Consensus 106 ~~~~l~sgs~Dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~ 185 (751)
..+++|+|.|-+|++||.+.. ..+.+++.+|+..|.+++|+|.+.+.|+|++.|+||++|.+.++.+
T Consensus 109 -~P~vLtsSDDm~iKlW~we~~---------wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~sLDrTVKVWslgs~~~--- 175 (794)
T KOG0276|consen 109 -LPYVLTSSDDMTIKLWDWENE---------WACEQTFEGHEHYVMQVAFNPKDPNTFASASLDRTVKVWSLGSPHP--- 175 (794)
T ss_pred -CCeEEecCCccEEEEeeccCc---------eeeeeEEcCcceEEEEEEecCCCccceeeeeccccEEEEEcCCCCC---
Confidence 799999999999999999853 4678999999999999999999999999999999999999987653
Q ss_pred CCCCCCccceEEEecccCceecccCCCCCccceEEEEEeCCC-CcEEEEEeCCCeEEEEeCCCCCCccccCCCCCCCCcc
Q 004477 186 AGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTR-PHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCV 264 (751)
Q Consensus 186 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~-~~~l~sgs~D~~IriwD~~~~~~~~~~~~~~~~~~~~ 264 (751)
..+..+|...|+|+++-+.+ .-+|++|+.|.+|+|||..+.+ |+
T Consensus 176 ----------------------nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~-------------CV 220 (794)
T KOG0276|consen 176 ----------------------NFTLEGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKS-------------CV 220 (794)
T ss_pred ----------------------ceeeeccccCcceEEeccCCCcceEEecCCCceEEEeecchHH-------------HH
Confidence 22334588899999998742 2499999999999999998764 55
Q ss_pred ccccccccccCCccccceEEEEEcCCCCEEEEEeCCCcEEEEECCCCCcceeeeecCCCceeEEeCCCCCCccc
Q 004477 265 NYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVGDASKIMSFTPTLNGLEL 338 (751)
Q Consensus 265 ~~~~~~~~~~~g~~~~~vt~v~fspdg~~Ll~~s~d~~I~lwdl~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~ 338 (751)
+.+ .||.+ .|..+.|+|.-..+++|+.||+|+||+-.+-+.....-...+.+..++..+..+.++.
T Consensus 221 ~TL-------eGHt~-Nvs~v~fhp~lpiiisgsEDGTvriWhs~Ty~lE~tLn~gleRvW~I~~~k~~~~i~v 286 (794)
T KOG0276|consen 221 QTL-------EGHTN-NVSFVFFHPELPIIISGSEDGTVRIWNSKTYKLEKTLNYGLERVWCIAAHKGDGKIAV 286 (794)
T ss_pred HHh-------hcccc-cceEEEecCCCcEEEEecCCccEEEecCcceehhhhhhcCCceEEEEeecCCCCeEEE
Confidence 555 56766 5999999999999999999999999998886544444333444444454455444433
No 66
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.93 E-value=4.2e-24 Score=237.29 Aligned_cols=199 Identities=22% Similarity=0.353 Sum_probs=169.7
Q ss_pred EEecc-CCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEE-ecccCCcceEEEEEecCCCCcEEEEEECCCcEEE
Q 004477 44 RELEG-HQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHS-IETGHSANVFCTKFVPETSDELVVSGAGDAEVRL 121 (751)
Q Consensus 44 ~~L~g-H~~~V~~l~~s~dg~~LaSgs~Dg~I~IWd~~~~~~~~~-l~~~h~~~V~~v~fsp~s~~~~l~sgs~Dg~V~v 121 (751)
+.+.+ |...|.+..|. +.++++++.|.+|++||..++..+.. + .||.+.|.+++|... +.++++|+.|.+++|
T Consensus 201 ~~~~~~~~~~~~~~q~~--~~~~~~~s~~~tl~~~~~~~~~~i~~~l-~GH~g~V~~l~~~~~--~~~lvsgS~D~t~rv 275 (537)
T KOG0274|consen 201 KVLLGTDDHVVLCLQLH--DGFFKSGSDDSTLHLWDLNNGYLILTRL-VGHFGGVWGLAFPSG--GDKLVSGSTDKTERV 275 (537)
T ss_pred eeecccCcchhhhheee--cCeEEecCCCceeEEeecccceEEEeec-cCCCCCceeEEEecC--CCEEEEEecCCcEEe
Confidence 34444 56789999998 66899999999999999999999888 6 899999999999975 789999999999999
Q ss_pred EECCCCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCCCCCCCCCCccceEEEecc
Q 004477 122 FNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLR 201 (751)
Q Consensus 122 wd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~~~~~~~~~~~~l~~~~ 201 (751)
||..++ .+.+++.+|...|.++... +..+++|+.|.+|++|++.++..+
T Consensus 276 Wd~~sg----------~C~~~l~gh~stv~~~~~~---~~~~~sgs~D~tVkVW~v~n~~~l------------------ 324 (537)
T KOG0274|consen 276 WDCSTG----------ECTHSLQGHTSSVRCLTID---PFLLVSGSRDNTVKVWDVTNGACL------------------ 324 (537)
T ss_pred EecCCC----------cEEEEecCCCceEEEEEcc---CceEeeccCCceEEEEeccCcceE------------------
Confidence 998865 6699999999999999874 468889999999999999977532
Q ss_pred cCceecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCccccCCCCCCCCccccccccccccCCccccc
Q 004477 202 CGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLH 281 (751)
Q Consensus 202 ~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 281 (751)
....+|..+|+++.++ +.++++|+.|++|++||+++++.++++ .||.. +
T Consensus 325 -------~l~~~h~~~V~~v~~~---~~~lvsgs~d~~v~VW~~~~~~cl~sl--------------------~gH~~-~ 373 (537)
T KOG0274|consen 325 -------NLLRGHTGPVNCVQLD---EPLLVSGSYDGTVKVWDPRTGKCLKSL--------------------SGHTG-R 373 (537)
T ss_pred -------EEeccccccEEEEEec---CCEEEEEecCceEEEEEhhhceeeeee--------------------cCCcc-e
Confidence 1222377899999997 469999999999999999987755443 45655 6
Q ss_pred eEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 004477 282 LTHVTFSPNGEEVLLSYSGEHVYLMDVNH 310 (751)
Q Consensus 282 vt~v~fspdg~~Ll~~s~d~~I~lwdl~~ 310 (751)
|+++.+.+. .++++|+.|+.|++||+.+
T Consensus 374 V~sl~~~~~-~~~~Sgs~D~~IkvWdl~~ 401 (537)
T KOG0274|consen 374 VYSLIVDSE-NRLLSGSLDTTIKVWDLRT 401 (537)
T ss_pred EEEEEecCc-ceEEeeeeccceEeecCCc
Confidence 999988877 8999999999999999988
No 67
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=99.93 E-value=1.4e-24 Score=214.61 Aligned_cols=256 Identities=16% Similarity=0.332 Sum_probs=200.9
Q ss_pred cccccccccchhhhccccccEEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEecccCCcceEEEEEec
Q 004477 24 PDVNHSLQMHSSLVRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVP 103 (751)
Q Consensus 24 ~~~~~~l~~~~~~i~~~~~~~~L~gH~~~V~~l~~s~dg~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp 103 (751)
...++.+++|+ +.+.++..+|.||...|..+++|+--.||.+++.|+.|+-||++..+.+..+ .||-..|.|++.+|
T Consensus 169 gs~DrtikIwD--latg~LkltltGhi~~vr~vavS~rHpYlFs~gedk~VKCwDLe~nkvIR~Y-hGHlS~V~~L~lhP 245 (460)
T KOG0285|consen 169 GSADRTIKIWD--LATGQLKLTLTGHIETVRGVAVSKRHPYLFSAGEDKQVKCWDLEYNKVIRHY-HGHLSGVYCLDLHP 245 (460)
T ss_pred cCCCceeEEEE--cccCeEEEeecchhheeeeeeecccCceEEEecCCCeeEEEechhhhhHHHh-ccccceeEEEeccc
Confidence 34678889988 4556677899999999999999999999999999999999999999999988 89999999999999
Q ss_pred CCCCcEEEEEECCCcEEEEECCCCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCC
Q 004477 104 ETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSC 183 (751)
Q Consensus 104 ~s~~~~l~sgs~Dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~ 183 (751)
. .+.|+||+.|.++||||+++. ..+.++.+|+.+|.++.+.|.++. +++||.|++|++||++.++..
T Consensus 246 T--ldvl~t~grDst~RvWDiRtr----------~~V~~l~GH~~~V~~V~~~~~dpq-vit~S~D~tvrlWDl~agkt~ 312 (460)
T KOG0285|consen 246 T--LDVLVTGGRDSTIRVWDIRTR----------ASVHVLSGHTNPVASVMCQPTDPQ-VITGSHDSTVRLWDLRAGKTM 312 (460)
T ss_pred c--ceeEEecCCcceEEEeeeccc----------ceEEEecCCCCcceeEEeecCCCc-eEEecCCceEEEeeeccCcee
Confidence 9 799999999999999999975 558999999999999999998865 559999999999999998754
Q ss_pred CCCCCCCCccc----------------eEEEecccCceecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCC
Q 004477 184 PPAGSSHQECR----------------NILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRM 247 (751)
Q Consensus 184 ~~~~~~~~~~~----------------~~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~ 247 (751)
..........+ ..+....-.....+....+|..-+++++.+.+ .++++|+..|.|.+||.++
T Consensus 313 ~tlt~hkksvral~lhP~e~~fASas~dnik~w~~p~g~f~~nlsgh~~iintl~~nsD--~v~~~G~dng~~~fwdwks 390 (460)
T KOG0285|consen 313 ITLTHHKKSVRALCLHPKENLFASASPDNIKQWKLPEGEFLQNLSGHNAIINTLSVNSD--GVLVSGGDNGSIMFWDWKS 390 (460)
T ss_pred EeeecccceeeEEecCCchhhhhccCCccceeccCCccchhhccccccceeeeeeeccC--ceEEEcCCceEEEEEecCc
Confidence 32221111111 11111111112223334567788999999985 5999999999999999998
Q ss_pred CCCccccCCCCCCCCccccccccccccCCccccceEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 004477 248 LPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNH 310 (751)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~vt~v~fspdg~~Ll~~s~d~~I~lwdl~~ 310 (751)
+......+.... |+.+.. ...|++.+|...|..|+++..|.+|++|.-+.
T Consensus 391 g~nyQ~~~t~vq---------pGSl~s----EagI~as~fDktg~rlit~eadKtIk~~keDe 440 (460)
T KOG0285|consen 391 GHNYQRGQTIVQ---------PGSLES----EAGIFASCFDKTGSRLITGEADKTIKMYKEDE 440 (460)
T ss_pred Cccccccccccc---------CCcccc----ccceeEEeecccCceEEeccCCcceEEEeccc
Confidence 765443322211 222211 12489999999999999999999999997554
No 68
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=99.93 E-value=9.8e-25 Score=211.84 Aligned_cols=263 Identities=18% Similarity=0.256 Sum_probs=206.4
Q ss_pred ccccccccchhhhccccccEEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEecccCCcceEEEEEecC
Q 004477 25 DVNHSLQMHSSLVRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPE 104 (751)
Q Consensus 25 ~~~~~l~~~~~~i~~~~~~~~L~gH~~~V~~l~~s~dg~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~ 104 (751)
.+++.+-+|.-+ ...+-..+++||++.|..+.|++|++.|+|+|.|++|+.||+++|+++..+ ++|..-|+++.-+.-
T Consensus 66 G~Dr~I~LWnv~-gdceN~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~wD~~tG~~~rk~-k~h~~~vNs~~p~rr 143 (338)
T KOG0265|consen 66 GSDRAIVLWNVY-GDCENFWVLKGHSGAVMELHGMRDGSHILSCGTDKTVRGWDAETGKRIRKH-KGHTSFVNSLDPSRR 143 (338)
T ss_pred CCcceEEEEecc-ccccceeeeccccceeEeeeeccCCCEEEEecCCceEEEEecccceeeehh-ccccceeeecCcccc
Confidence 466777777633 222344677899999999999999999999999999999999999999999 899999999984433
Q ss_pred CCCcEEEEEECCCcEEEEECCCCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCCC
Q 004477 105 TSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCP 184 (751)
Q Consensus 105 s~~~~l~sgs~Dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~ 184 (751)
+..++.||+.|++++|||++.. .+++++. ..-.++++.|.. .+..+.+|+-|+.|++||+|.+...
T Consensus 144 -g~~lv~SgsdD~t~kl~D~R~k----------~~~~t~~-~kyqltAv~f~d-~s~qv~sggIdn~ikvWd~r~~d~~- 209 (338)
T KOG0265|consen 144 -GPQLVCSGSDDGTLKLWDIRKK----------EAIKTFE-NKYQLTAVGFKD-TSDQVISGGIDNDIKVWDLRKNDGL- 209 (338)
T ss_pred -CCeEEEecCCCceEEEEeeccc----------chhhccc-cceeEEEEEecc-cccceeeccccCceeeeccccCcce-
Confidence 2467789999999999999964 4455554 355689999987 5567779999999999999987632
Q ss_pred CCCCCCCccceEEEecccCceecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCccccCCCCCCCCcc
Q 004477 185 PAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCV 264 (751)
Q Consensus 185 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~~~~~~~~~~~~~~ 264 (751)
....+|...|+.+..+|. +.++++-+.|.+|++||+|-..+. .+|+
T Consensus 210 ------------------------~~lsGh~DtIt~lsls~~-gs~llsnsMd~tvrvwd~rp~~p~---------~R~v 255 (338)
T KOG0265|consen 210 ------------------------YTLSGHADTITGLSLSRY-GSFLLSNSMDNTVRVWDVRPFAPS---------QRCV 255 (338)
T ss_pred ------------------------EEeecccCceeeEEeccC-CCccccccccceEEEEEecccCCC---------CceE
Confidence 223458889999999995 799999999999999999865432 2455
Q ss_pred ccccccccccCCccccceEEEEEcCCCCEEEEEeCCCcEEEEECCCCCcceeeeecCCCceeEEeCCCCCCcccCCC
Q 004477 265 NYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVGDASKIMSFTPTLNGLELQPP 341 (751)
Q Consensus 265 ~~~~~~~~~~~g~~~~~vt~v~fspdg~~Ll~~s~d~~I~lwdl~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~~ 341 (751)
+.|......- .+ ....++|+|+++.+-+|+.|..+|+||.........+.++...++.+.|+|.-.-+.....
T Consensus 256 ~if~g~~hnf-ek---nlL~cswsp~~~~i~ags~dr~vyvwd~~~r~~lyklpGh~gsvn~~~Fhp~e~iils~~s 328 (338)
T KOG0265|consen 256 KIFQGHIHNF-EK---NLLKCSWSPNGTKITAGSADRFVYVWDTTSRRILYKLPGHYGSVNEVDFHPTEPIILSCSS 328 (338)
T ss_pred EEeecchhhh-hh---hcceeeccCCCCccccccccceEEEeecccccEEEEcCCcceeEEEeeecCCCcEEEEecc
Confidence 5553221111 11 2567899999999999999999999999986666666777788899999998665544433
No 69
>PTZ00420 coronin; Provisional
Probab=99.93 E-value=8.4e-24 Score=235.56 Aligned_cols=236 Identities=14% Similarity=0.192 Sum_probs=170.2
Q ss_pred ccccEEeccCCCcEEEEEECCC-CCEEEEEeCCCcEEEEeCCCCe--------EEEEecccCCcceEEEEEecCCCCcEE
Q 004477 40 LSQERELEGHQGCVNAISWNSK-GSLLISGSDDTHINVWSYSSRK--------LLHSIETGHSANVFCTKFVPETSDELV 110 (751)
Q Consensus 40 ~~~~~~L~gH~~~V~~l~~s~d-g~~LaSgs~Dg~I~IWd~~~~~--------~~~~l~~~h~~~V~~v~fsp~s~~~~l 110 (751)
..++..|.+|.+.|++++|+|+ +.+||||+.|++|+|||+.++. .+..+ .+|...|.+++|+|+. ..+|
T Consensus 64 ~~~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L-~gH~~~V~sVaf~P~g-~~iL 141 (568)
T PTZ00420 64 KPPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCIL-KGHKKKISIIDWNPMN-YYIM 141 (568)
T ss_pred CceEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEe-ecCCCcEEEEEECCCC-CeEE
Confidence 4567889999999999999996 7899999999999999987542 23345 7899999999999983 3456
Q ss_pred EEEECCCcEEEEECCCCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCCCCCCCCC
Q 004477 111 VSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSH 190 (751)
Q Consensus 111 ~sgs~Dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~~~~~~ 190 (751)
+||+.|++|+|||+..+ ..+..+. |...|.+++|+| ++.+|++++.|++|++||+++++.+..
T Consensus 142 aSgS~DgtIrIWDl~tg----------~~~~~i~-~~~~V~Slswsp-dG~lLat~s~D~~IrIwD~Rsg~~i~t----- 204 (568)
T PTZ00420 142 CSSGFDSFVNIWDIENE----------KRAFQIN-MPKKLSSLKWNI-KGNLLSGTCVGKHMHIIDPRKQEIASS----- 204 (568)
T ss_pred EEEeCCCeEEEEECCCC----------cEEEEEe-cCCcEEEEEECC-CCCEEEEEecCCEEEEEECCCCcEEEE-----
Confidence 89999999999999864 2244444 667899999999 678999999999999999998763210
Q ss_pred CccceEEEecccCceecccCCCCCcc-----ceEEEEEeCCCCcEEEEEeCCC----eEEEEeCCCC-CCccccCCCCCC
Q 004477 191 QECRNILLDLRCGAKRSLADPPKQTL-----SLKSCDISSTRPHLLLVGGSDA----FARLYDRRML-PPLTSCQKRMSP 260 (751)
Q Consensus 191 ~~~~~~l~~~~~~~~~~~~~~~~~~~-----~v~~i~~sp~~~~~l~sgs~D~----~IriwD~~~~-~~~~~~~~~~~~ 260 (751)
+ ..|.. .+....|+++ +.+|++++.|+ .|+|||++.. +++....
T Consensus 205 ------l--------------~gH~g~~~s~~v~~~~fs~d-~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~----- 258 (568)
T PTZ00420 205 ------F--------------HIHDGGKNTKNIWIDGLGGD-DNYILSTGFSKNNMREMKLWDLKNTTSALVTMS----- 258 (568)
T ss_pred ------E--------------ecccCCceeEEEEeeeEcCC-CCEEEEEEcCCCCccEEEEEECCCCCCceEEEE-----
Confidence 0 11222 2333456674 67888877664 7999999963 2222110
Q ss_pred CCccccccccccccCCccccceEEEEEcCCCCEEEEEeCCCcEEEEECCCCCcce-eeeecCCCceeEEeCCCCC
Q 004477 261 PPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRA-MRYTVGDASKIMSFTPTLN 334 (751)
Q Consensus 261 ~~~~~~~~~~~~~~~g~~~~~vt~v~fspdg~~Ll~~s~d~~I~lwdl~~~~~~~-~~~~~~~~~~~~~~sp~~~ 334 (751)
+ ..+ ...+......++|.++++|++|+.|++|++..+.... ..+....+.+.++|.|...
T Consensus 259 -----------l--d~~-~~~L~p~~D~~tg~l~lsGkGD~tIr~~e~~~~~~~~l~~~~s~~p~~g~~f~Pkr~ 319 (568)
T PTZ00420 259 -----------I--DNA-SAPLIPHYDESTGLIYLIGKGDGNCRYYQHSLGSIRKVNEYKSCSPFRSFGFLPKQI 319 (568)
T ss_pred -----------e--cCC-ccceEEeeeCCCCCEEEEEECCCeEEEEEccCCcEEeecccccCCCccceEEccccc
Confidence 0 011 1124444456678999999999999999998753211 1233456677888888643
No 70
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.93 E-value=4.4e-24 Score=239.19 Aligned_cols=241 Identities=16% Similarity=0.221 Sum_probs=181.1
Q ss_pred eccCC-CcEEEEEECCCCCEEEEEe--CCCcEEEEeCCC------------CeEEEEecccCCcceEEEEEecCCCCcEE
Q 004477 46 LEGHQ-GCVNAISWNSKGSLLISGS--DDTHINVWSYSS------------RKLLHSIETGHSANVFCTKFVPETSDELV 110 (751)
Q Consensus 46 L~gH~-~~V~~l~~s~dg~~LaSgs--~Dg~I~IWd~~~------------~~~~~~l~~~h~~~V~~v~fsp~s~~~~l 110 (751)
+-+|. ..|..+..+|+|..+|||+ .|+.++||+... .+.+.+. ..|.+.|+|+.|+|+ |++|
T Consensus 8 wv~H~~~~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m-~~h~~sv~CVR~S~d--G~~l 84 (942)
T KOG0973|consen 8 WVNHNEKSIFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTM-DDHDGSVNCVRFSPD--GSYL 84 (942)
T ss_pred ccccCCeeEEEEEecCCceeEecCCccccccceeeccccccchhhhhhcccchhheee-ccccCceeEEEECCC--CCeE
Confidence 34454 4689999999999999999 999999998642 2334445 689999999999999 8999
Q ss_pred EEEECCCcEEEEECCC-CCC-------CCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCC
Q 004477 111 VSGAGDAEVRLFNLSR-FSG-------RGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSS 182 (751)
Q Consensus 111 ~sgs~Dg~V~vwd~~~-~~~-------~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~ 182 (751)
|+|+.|+.|.||.... +.+ .......++.+..+.+|...|..++|+| ++.+|+|+|.|++|.|||.++.+.
T Consensus 85 AsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp-~~~~lvS~s~DnsViiwn~~tF~~ 163 (942)
T KOG0973|consen 85 ASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSP-DDSLLVSVSLDNSVIIWNAKTFEL 163 (942)
T ss_pred eeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCC-CccEEEEecccceEEEEcccccee
Confidence 9999999999999883 111 1112233567888999999999999999 779999999999999999998742
Q ss_pred CCCCCCCCCccceEEEecccCceecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCccccCCCCCCCC
Q 004477 183 CPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPP 262 (751)
Q Consensus 183 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~~~~~~~~~~~~ 262 (751)
+....+|...|..+.|.|. ++||++-+.|++|+||++.+....+.+...
T Consensus 164 -------------------------~~vl~~H~s~VKGvs~DP~-Gky~ASqsdDrtikvwrt~dw~i~k~It~p----- 212 (942)
T KOG0973|consen 164 -------------------------LKVLRGHQSLVKGVSWDPI-GKYFASQSDDRTLKVWRTSDWGIEKSITKP----- 212 (942)
T ss_pred -------------------------eeeeecccccccceEECCc-cCeeeeecCCceEEEEEcccceeeEeeccc-----
Confidence 2333458889999999996 899999999999999997664333222111
Q ss_pred ccccccccccccCCccccceEEEEEcCCCCEEEEEeC----CCcEEEEECCCCCcceeeeecCCCceeEEeCC
Q 004477 263 CVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYS----GEHVYLMDVNHAGGRAMRYTVGDASKIMSFTP 331 (751)
Q Consensus 263 ~~~~~~~~~~~~~g~~~~~vt~v~fspdg~~Ll~~s~----d~~I~lwdl~~~~~~~~~~~~~~~~~~~~~sp 331 (751)
| ...+-.. .+..+.|||||.+|++... ..++.|.+-.+.+...-+.+|..+..++.|+|
T Consensus 213 ----f-----~~~~~~T-~f~RlSWSPDG~~las~nA~n~~~~~~~IieR~tWk~~~~LvGH~~p~evvrFnP 275 (942)
T KOG0973|consen 213 ----F-----EESPLTT-FFLRLSWSPDGHHLASPNAVNGGKSTIAIIERGTWKVDKDLVGHSAPVEVVRFNP 275 (942)
T ss_pred ----h-----hhCCCcc-eeeecccCCCcCeecchhhccCCcceeEEEecCCceeeeeeecCCCceEEEEeCh
Confidence 1 0001111 4788999999999987643 34677777666555555666666666666666
No 71
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=99.92 E-value=8.5e-24 Score=210.28 Aligned_cols=226 Identities=14% Similarity=0.162 Sum_probs=175.0
Q ss_pred hccccccEEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEecccCCcceEEEEEecCCCCcEEEEEECC
Q 004477 37 VRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGD 116 (751)
Q Consensus 37 i~~~~~~~~L~gH~~~V~~l~~s~dg~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~D 116 (751)
+.+.....+|.||++.|.|+.||.+|.+||||+.+|.|+||...++.....+ ..--..|.=++|+|. +.+|+.|+.|
T Consensus 93 ~~~ge~~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~~stg~~~~~~-~~e~~dieWl~WHp~--a~illAG~~D 169 (399)
T KOG0296|consen 93 ISTGEFAGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFKVSTGGEQWKL-DQEVEDIEWLKWHPR--AHILLAGSTD 169 (399)
T ss_pred ccCCcceeEecCCCCceEEEEEccCceEEEecCCCccEEEEEcccCceEEEe-ecccCceEEEEeccc--ccEEEeecCC
Confidence 3444578899999999999999999999999999999999999999988888 455677888999998 8999999999
Q ss_pred CcEEEEECCCCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCCCCCCCCCCccceE
Q 004477 117 AEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNI 196 (751)
Q Consensus 117 g~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~~~~~~~~~~~~ 196 (751)
|.|-+|.+... ...+.+.+|+.++++=.|.| +++.++++..||+|++||+.++++......
T Consensus 170 GsvWmw~ip~~----------~~~kv~~Gh~~~ct~G~f~p-dGKr~~tgy~dgti~~Wn~ktg~p~~~~~~-------- 230 (399)
T KOG0296|consen 170 GSVWMWQIPSQ----------ALCKVMSGHNSPCTCGEFIP-DGKRILTGYDDGTIIVWNPKTGQPLHKITQ-------- 230 (399)
T ss_pred CcEEEEECCCc----------ceeeEecCCCCCcccccccC-CCceEEEEecCceEEEEecCCCceeEEecc--------
Confidence 99999999863 33688999999999999999 578899999999999999999874311100
Q ss_pred EEecccCceecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCccccCCCCCCCCccccccccccccCC
Q 004477 197 LLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHG 276 (751)
Q Consensus 197 l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 276 (751)
......+++.++. .+..++.|+.++.+++-...+++.+..... -.|......-
T Consensus 231 ----------------~e~~~~~~~~~~~-~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~----------~~~~l~~~~e 283 (399)
T KOG0296|consen 231 ----------------AEGLELPCISLNL-AGSTLTKGNSEGVACGVNNGSGKVVNCNNG----------TVPELKPSQE 283 (399)
T ss_pred ----------------cccCcCCcccccc-ccceeEeccCCccEEEEccccceEEEecCC----------CCccccccch
Confidence 0134567788888 478999999999999988887764432211 0011011111
Q ss_pred ccccceEEEEEcCCCCEEEEEeCCCcEEEEECCCC
Q 004477 277 RSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHA 311 (751)
Q Consensus 277 ~~~~~vt~v~fspdg~~Ll~~s~d~~I~lwdl~~~ 311 (751)
+....|-++.|+..=...++|+-||+|.|||+...
T Consensus 284 ~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~ 318 (399)
T KOG0296|consen 284 ELDESVESIPSSSKLPLAACGSVDGTIAIYDLAAS 318 (399)
T ss_pred hhhhhhhhcccccccchhhcccccceEEEEecccc
Confidence 11112455555556677889999999999999884
No 72
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.92 E-value=4.5e-25 Score=208.54 Aligned_cols=209 Identities=21% Similarity=0.306 Sum_probs=176.0
Q ss_pred cccccEEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEecccCCcceEEEEEecCCCCcEEEEEECCCc
Q 004477 39 RLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAE 118 (751)
Q Consensus 39 ~~~~~~~L~gH~~~V~~l~~s~dg~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~Dg~ 118 (751)
+..-+-++.||++.|+....+.+..+-||++.|-+.+|||.-+|..++.+ .|+.-|..++|+.+ .++|+||+.+..
T Consensus 48 tgdwigtfeghkgavw~~~l~~na~~aasaaadftakvw~a~tgdelhsf--~hkhivk~~af~~d--s~~lltgg~ekl 123 (334)
T KOG0278|consen 48 TGDWIGTFEGHKGAVWSATLNKNATRAASAAADFTAKVWDAVTGDELHSF--EHKHIVKAVAFSQD--SNYLLTGGQEKL 123 (334)
T ss_pred CCCcEEeeeccCcceeeeecCchhhhhhhhcccchhhhhhhhhhhhhhhh--hhhheeeeEEeccc--chhhhccchHHH
Confidence 44557789999999999999999999999999999999999999999998 58888999999999 589999999999
Q ss_pred EEEEECCCCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCCCCCCCCCCccceEEE
Q 004477 119 VRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILL 198 (751)
Q Consensus 119 V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~~~~~~~~~~~~l~ 198 (751)
+||||++... .+...+.+|++.|+.+-|.. ..+.|+|.+.|++||+||.|++.... .+.
T Consensus 124 lrvfdln~p~---------App~E~~ghtg~Ir~v~wc~-eD~~iLSSadd~tVRLWD~rTgt~v~-----------sL~ 182 (334)
T KOG0278|consen 124 LRVFDLNRPK---------APPKEISGHTGGIRTVLWCH-EDKCILSSADDKTVRLWDHRTGTEVQ-----------SLE 182 (334)
T ss_pred hhhhhccCCC---------CCchhhcCCCCcceeEEEec-cCceEEeeccCCceEEEEeccCcEEE-----------EEe
Confidence 9999999753 45778899999999999998 44778888999999999999987431 110
Q ss_pred ecccCceecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCccccCCCCCCCCccccccccccccCCcc
Q 004477 199 DLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRS 278 (751)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 278 (751)
....|+++.++++ +++ ++-...+.|++||..+...+.++..
T Consensus 183 ---------------~~s~VtSlEvs~d-G~i-lTia~gssV~Fwdaksf~~lKs~k~---------------------- 223 (334)
T KOG0278|consen 183 ---------------FNSPVTSLEVSQD-GRI-LTIAYGSSVKFWDAKSFGLLKSYKM---------------------- 223 (334)
T ss_pred ---------------cCCCCcceeeccC-CCE-EEEecCceeEEeccccccceeeccC----------------------
Confidence 2457899999995 555 4556678899999998876654321
Q ss_pred ccceEEEEEcCCCCEEEEEeCCCcEEEEECCCC
Q 004477 279 SLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHA 311 (751)
Q Consensus 279 ~~~vt~v~fspdg~~Ll~~s~d~~I~lwdl~~~ 311 (751)
...|.+..++|+...+++|+.|..++.||..++
T Consensus 224 P~nV~SASL~P~k~~fVaGged~~~~kfDy~Tg 256 (334)
T KOG0278|consen 224 PCNVESASLHPKKEFFVAGGEDFKVYKFDYNTG 256 (334)
T ss_pred ccccccccccCCCceEEecCcceEEEEEeccCC
Confidence 124899999999999999999999999998884
No 73
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.92 E-value=1.9e-22 Score=187.97 Aligned_cols=222 Identities=17% Similarity=0.309 Sum_probs=158.9
Q ss_pred cccccEEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCC------C--------eEEEEecccCCcceEEEEEecC
Q 004477 39 RLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSS------R--------KLLHSIETGHSANVFCTKFVPE 104 (751)
Q Consensus 39 ~~~~~~~L~gH~~~V~~l~~s~dg~~LaSgs~Dg~I~IWd~~~------~--------~~~~~l~~~h~~~V~~v~fsp~ 104 (751)
.+..+.+|+ .+..|.+++|+|.|.+.|.||..++++|--+.. + ..+..-.+.|++.|.|++|+|+
T Consensus 22 ~f~~i~~l~-dsqairav~fhp~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ws~~ 100 (350)
T KOG0641|consen 22 HFEAINILE-DSQAIRAVAFHPAGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAWSPC 100 (350)
T ss_pred ceEEEEEec-chhheeeEEecCCCceEEeccCCceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEEecCc
Confidence 344555665 467899999999999999999999999975421 1 1222223578999999999999
Q ss_pred CCCcEEEEEECCCcEEEEECCCCCCCCCCCCCCCCceeecccCCceeEEEEec---CCCCEEEEEe-CCCcEEEEecCCC
Q 004477 105 TSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEV---GNPHVVWSAS-EDGTLRQHDFRQG 180 (751)
Q Consensus 105 s~~~~l~sgs~Dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp---~~~~~l~s~s-~Dg~I~iwDlr~~ 180 (751)
|++|++|+.|.+|++.-+...+.... .+-..+.-|.+.|..++|-. .++.+|++++ .|..|++-|...+
T Consensus 101 --geliatgsndk~ik~l~fn~dt~~~~-----g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g 173 (350)
T KOG0641|consen 101 --GELIATGSNDKTIKVLPFNADTCNAT-----GHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRG 173 (350)
T ss_pred --cCeEEecCCCceEEEEeccccccccc-----CcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCC
Confidence 89999999999999987765332221 33456788999999999964 2456777765 4666666666665
Q ss_pred CCCCCCCCCCCccceEEEecccCceecccCCCCCccceEEE-EEeCCCCcEEEEEeCCCeEEEEeCCCCCCccccCCCCC
Q 004477 181 SSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSC-DISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMS 259 (751)
Q Consensus 181 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~i-~~sp~~~~~l~sgs~D~~IriwD~~~~~~~~~~~~~~~ 259 (751)
+.. ....+|...|.++ .|+ +-++++|+.|.+||+||+|-...+..+...
T Consensus 174 ~~~-------------------------~a~sghtghilalyswn---~~m~~sgsqdktirfwdlrv~~~v~~l~~~-- 223 (350)
T KOG0641|consen 174 QGF-------------------------HALSGHTGHILALYSWN---GAMFASGSQDKTIRFWDLRVNSCVNTLDND-- 223 (350)
T ss_pred Ccc-------------------------eeecCCcccEEEEEEec---CcEEEccCCCceEEEEeeeccceeeeccCc--
Confidence 532 1222344445444 343 579999999999999999976544333211
Q ss_pred CCCccccccccccccCCccccceEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 004477 260 PPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNH 310 (751)
Q Consensus 260 ~~~~~~~~~~~~~~~~g~~~~~vt~v~fspdg~~Ll~~s~d~~I~lwdl~~ 310 (751)
....|-.+..|++++..|.|+.|++|-.|....+||++.
T Consensus 224 ------------~~~~glessavaav~vdpsgrll~sg~~dssc~lydirg 262 (350)
T KOG0641|consen 224 ------------FHDGGLESSAVAAVAVDPSGRLLASGHADSSCMLYDIRG 262 (350)
T ss_pred ------------ccCCCcccceeEEEEECCCcceeeeccCCCceEEEEeeC
Confidence 111233345799999999999999999998888888776
No 74
>PTZ00421 coronin; Provisional
Probab=99.92 E-value=3.4e-23 Score=229.79 Aligned_cols=211 Identities=15% Similarity=0.128 Sum_probs=161.3
Q ss_pred CCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEE-------------EecccCCcceEEEEEecCCCCcEEEEEEC
Q 004477 49 HQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLH-------------SIETGHSANVFCTKFVPETSDELVVSGAG 115 (751)
Q Consensus 49 H~~~V~~l~~s~dg~~LaSgs~Dg~I~IWd~~~~~~~~-------------~l~~~h~~~V~~v~fsp~s~~~~l~sgs~ 115 (751)
|-..|+....++++..+++++.+..+..|+...+..+. .+ .+|.+.|.+++|+|.. +++|++|+.
T Consensus 19 ~~~~i~~~~~~~d~~~~~~~n~~~~a~~w~~~gg~~v~~~~~~G~~~~~~~~l-~GH~~~V~~v~fsP~d-~~~LaSgS~ 96 (493)
T PTZ00421 19 HFLNVTPSTALWDCSNTIACNDRFIAVPWQQLGSTAVLKHTDYGKLASNPPIL-LGQEGPIIDVAFNPFD-PQKLFTASE 96 (493)
T ss_pred ceeccccccccCCCCCcEeECCceEEEEEecCCceEEeeccccccCCCCCceE-eCCCCCEEEEEEcCCC-CCEEEEEeC
Confidence 34456667777888888899888888889865443321 23 6899999999999942 689999999
Q ss_pred CCcEEEEECCCCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCCCCCCCCCCccce
Q 004477 116 DAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRN 195 (751)
Q Consensus 116 Dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~~~~~~~~~~~ 195 (751)
|++|+|||+...... .....++..+.+|...|.+++|+|.+..+|++++.|++|++||+++++..
T Consensus 97 DgtIkIWdi~~~~~~---~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~~------------ 161 (493)
T PTZ00421 97 DGTIMGWGIPEEGLT---QNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKAV------------ 161 (493)
T ss_pred CCEEEEEecCCCccc---cccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCeEE------------
Confidence 999999999753110 01124577899999999999999966689999999999999999876421
Q ss_pred EEEecccCceecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCccccCCCCCCCCccccccccccccC
Q 004477 196 ILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEH 275 (751)
Q Consensus 196 ~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (751)
.....|...|.+++|+| ++.+|++++.|+.|+|||+++.+.+..+ .
T Consensus 162 -------------~~l~~h~~~V~sla~sp-dG~lLatgs~Dg~IrIwD~rsg~~v~tl--------------------~ 207 (493)
T PTZ00421 162 -------------EVIKCHSDQITSLEWNL-DGSLLCTTSKDKKLNIIDPRDGTIVSSV--------------------E 207 (493)
T ss_pred -------------EEEcCCCCceEEEEEEC-CCCEEEEecCCCEEEEEECCCCcEEEEE--------------------e
Confidence 11123567899999999 5899999999999999999986543322 2
Q ss_pred CccccceEEEEEcCCCCEEEEEe----CCCcEEEEECCC
Q 004477 276 GRSSLHLTHVTFSPNGEEVLLSY----SGEHVYLMDVNH 310 (751)
Q Consensus 276 g~~~~~vt~v~fspdg~~Ll~~s----~d~~I~lwdl~~ 310 (751)
+|....+..+.|.+++..|++++ .|+.|+|||+.+
T Consensus 208 ~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~ 246 (493)
T PTZ00421 208 AHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRK 246 (493)
T ss_pred cCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCC
Confidence 23332356788999988887764 378999999876
No 75
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=99.92 E-value=1.6e-23 Score=200.76 Aligned_cols=229 Identities=17% Similarity=0.269 Sum_probs=185.9
Q ss_pred cccccccccchhhhccccccEEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCC---eEEEEecccCCcceEEEE
Q 004477 24 PDVNHSLQMHSSLVRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSR---KLLHSIETGHSANVFCTK 100 (751)
Q Consensus 24 ~~~~~~l~~~~~~i~~~~~~~~L~gH~~~V~~l~~s~dg~~LaSgs~Dg~I~IWd~~~~---~~~~~l~~~h~~~V~~v~ 100 (751)
..|+-...+|...-..++++.+|+||..+|.|++|+++|++||+||.|+.|-||.+..+ .++..+ ++|+..|--+.
T Consensus 79 aSFD~t~~Iw~k~~~efecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~deddEfec~aVL-~~HtqDVK~V~ 157 (312)
T KOG0645|consen 79 ASFDATVVIWKKEDGEFECVATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDEFECIAVL-QEHTQDVKHVI 157 (312)
T ss_pred eeccceEEEeecCCCceeEEeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCcEEEEeee-ccccccccEEE
Confidence 56889999999999999999999999999999999999999999999999999998733 455556 89999999999
Q ss_pred EecCCCCcEEEEEECCCcEEEEECCCCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCC
Q 004477 101 FVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQG 180 (751)
Q Consensus 101 fsp~s~~~~l~sgs~Dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~ 180 (751)
|+|. ..+|+|+|.|.+|++|+-... ....+++++.+|...|.+++|++ .+..+++++.|++|+||-..+.
T Consensus 158 WHPt--~dlL~S~SYDnTIk~~~~~~d-------ddW~c~~tl~g~~~TVW~~~F~~-~G~rl~s~sdD~tv~Iw~~~~~ 227 (312)
T KOG0645|consen 158 WHPT--EDLLFSCSYDNTIKVYRDEDD-------DDWECVQTLDGHENTVWSLAFDN-IGSRLVSCSDDGTVSIWRLYTD 227 (312)
T ss_pred EcCC--cceeEEeccCCeEEEEeecCC-------CCeeEEEEecCccceEEEEEecC-CCceEEEecCCcceEeeeeccC
Confidence 9998 689999999999999988731 22467899999999999999999 6688999999999999987643
Q ss_pred CCCCCCCCCCCccceEEEecccCceecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCccccCCCCCC
Q 004477 181 SSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSP 260 (751)
Q Consensus 181 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~~~~~~~~~~ 260 (751)
-. ..|...++.++|. ...|++++.|+.|+||.......-..
T Consensus 228 ~~-----------------------------~~~sr~~Y~v~W~---~~~IaS~ggD~~i~lf~~s~~~d~p~------- 268 (312)
T KOG0645|consen 228 LS-----------------------------GMHSRALYDVPWD---NGVIASGGGDDAIRLFKESDSPDEPS------- 268 (312)
T ss_pred cc-----------------------------hhcccceEeeeec---ccceEeccCCCEEEEEEecCCCCCch-------
Confidence 21 1155678889998 25899999999999998763211000
Q ss_pred CCccccccccccccCCccccceEEEEEcCC-CCEEEEEeCCCcEEEEECC
Q 004477 261 PPCVNYFCPMHLSEHGRSSLHLTHVTFSPN-GEEVLLSYSGEHVYLMDVN 309 (751)
Q Consensus 261 ~~~~~~~~~~~~~~~g~~~~~vt~v~fspd-g~~Ll~~s~d~~I~lwdl~ 309 (751)
...+ . .....|.. .|++|.|+|. .++|++++.||.|++|.+.
T Consensus 269 ---~~l~--~-~~~~aHe~-dVNsV~w~p~~~~~L~s~~DDG~v~~W~l~ 311 (312)
T KOG0645|consen 269 ---WNLL--A-KKEGAHEV-DVNSVQWNPKVSNRLASGGDDGIVNFWELE 311 (312)
T ss_pred ---HHHH--H-hhhccccc-ccceEEEcCCCCCceeecCCCceEEEEEec
Confidence 0000 0 01123444 6999999995 6789999999999999874
No 76
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=99.92 E-value=1.9e-24 Score=222.06 Aligned_cols=257 Identities=16% Similarity=0.230 Sum_probs=209.5
Q ss_pred CcccccccccchhhhccccccEEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEecccCCcceEEEEEe
Q 004477 23 RPDVNHSLQMHSSLVRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFV 102 (751)
Q Consensus 23 ~~~~~~~l~~~~~~i~~~~~~~~L~gH~~~V~~l~~s~dg~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~V~~v~fs 102 (751)
+..++..+++|.-+- ..++++++.||..+|..++|+++|..++|+|-|+.|++||+++|+++..+..+ ..++|++|.
T Consensus 232 S~gmD~~vklW~vy~-~~~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~~lKlwDtETG~~~~~f~~~--~~~~cvkf~ 308 (503)
T KOG0282|consen 232 SGGMDGLVKLWNVYD-DRRCLRTFKGHRKPVRDASFNNCGTSFLSASFDRFLKLWDTETGQVLSRFHLD--KVPTCVKFH 308 (503)
T ss_pred ecCCCceEEEEEEec-CcceehhhhcchhhhhhhhccccCCeeeeeecceeeeeeccccceEEEEEecC--CCceeeecC
Confidence 356788889998765 66899999999999999999999999999999999999999999999998443 458999999
Q ss_pred cCCCCcEEEEEECCCcEEEEECCCCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCC
Q 004477 103 PETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSS 182 (751)
Q Consensus 103 p~s~~~~l~sgs~Dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~ 182 (751)
|+. .+.|++|+.|+.|+.||++.+ +.++.+..|-+.|..+.|-+ ++..|++.++|++++||+.+.+-.
T Consensus 309 pd~-~n~fl~G~sd~ki~~wDiRs~----------kvvqeYd~hLg~i~~i~F~~-~g~rFissSDdks~riWe~~~~v~ 376 (503)
T KOG0282|consen 309 PDN-QNIFLVGGSDKKIRQWDIRSG----------KVVQEYDRHLGAILDITFVD-EGRRFISSSDDKSVRIWENRIPVP 376 (503)
T ss_pred CCC-CcEEEEecCCCcEEEEeccch----------HHHHHHHhhhhheeeeEEcc-CCceEeeeccCccEEEEEcCCCcc
Confidence 994 489999999999999999975 56889999999999999999 678899999999999999998754
Q ss_pred CCCCCCCCCccceEEEecccCceecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCccccCCCCCCCC
Q 004477 183 CPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPP 262 (751)
Q Consensus 183 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~~~~~~~~~~~~ 262 (751)
+... .. .......+|..+|. +.+++.-+.|+.|.+|.+...-....
T Consensus 377 ik~i----------------------~~--~~~hsmP~~~~~P~-~~~~~aQs~dN~i~ifs~~~~~r~nk--------- 422 (503)
T KOG0282|consen 377 IKNI----------------------AD--PEMHTMPCLTLHPN-GKWFAAQSMDNYIAIFSTVPPFRLNK--------- 422 (503)
T ss_pred chhh----------------------cc--hhhccCcceecCCC-CCeehhhccCceEEEEecccccccCH---------
Confidence 3111 00 12345678999995 78999999999999998764322111
Q ss_pred ccccccccccccCCcc-ccceEEEEEcCCCCEEEEEeCCCcEEEEECCCCCcceeeeecCCCceeEEeCCCCCCc
Q 004477 263 CVNYFCPMHLSEHGRS-SLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVGDASKIMSFTPTLNGL 336 (751)
Q Consensus 263 ~~~~~~~~~~~~~g~~-~~~vt~v~fspdg~~Ll~~s~d~~I~lwdl~~~~~~~~~~~~~~~~~~~~~sp~~~~~ 336 (751)
.+.| .||. .+--+.|.|||||.+|++|.+||.+++||.++.+.......+..+...+.|+|.....
T Consensus 423 -kK~f-------eGh~vaGys~~v~fSpDG~~l~SGdsdG~v~~wdwkt~kl~~~lkah~~~ci~v~wHP~e~Sk 489 (503)
T KOG0282|consen 423 -KKRF-------EGHSVAGYSCQVDFSPDGRTLCSGDSDGKVNFWDWKTTKLVSKLKAHDQPCIGVDWHPVEPSK 489 (503)
T ss_pred -hhhh-------cceeccCceeeEEEcCCCCeEEeecCCccEEEeechhhhhhhccccCCcceEEEEecCCCcce
Confidence 1122 2221 1125679999999999999999999999999977777777777888889999975443
No 77
>PTZ00420 coronin; Provisional
Probab=99.92 E-value=1.2e-22 Score=226.50 Aligned_cols=193 Identities=15% Similarity=0.182 Sum_probs=148.4
Q ss_pred EEeCCCcEEEEeCCCCeEEEEecccCCcceEEEEEecCCCCcEEEEEECCCcEEEEECCCCCCCCCCCCCCCCceeeccc
Q 004477 67 SGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCH 146 (751)
Q Consensus 67 Sgs~Dg~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~Dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h 146 (751)
.|+.++.|+||+......+..+ .+|.+.|.+++|+|+. +.+|+||+.|++|+|||+....... .....++..+.+|
T Consensus 49 gGG~~gvI~L~~~~r~~~v~~L-~gH~~~V~~lafsP~~-~~lLASgS~DgtIrIWDi~t~~~~~--~~i~~p~~~L~gH 124 (568)
T PTZ00420 49 GGGLIGAIRLENQMRKPPVIKL-KGHTSSILDLQFNPCF-SEILASGSEDLTIRVWEIPHNDESV--KEIKDPQCILKGH 124 (568)
T ss_pred CCCceeEEEeeecCCCceEEEE-cCCCCCEEEEEEcCCC-CCEEEEEeCCCeEEEEECCCCCccc--cccccceEEeecC
Confidence 3778999999998877777777 8999999999999974 6899999999999999997532100 0001345678899
Q ss_pred CCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCCCCCCCCCCccceEEEecccCceecccCCCCCccceEEEEEeCC
Q 004477 147 TRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISST 226 (751)
Q Consensus 147 ~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~ 226 (751)
...|.+++|+|++..+|++++.|++|++||+++++.. .. + .+...|.+++|+|+
T Consensus 125 ~~~V~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~--------------~~--------i----~~~~~V~Slswspd 178 (568)
T PTZ00420 125 KKKISIIDWNPMNYYIMCSSGFDSFVNIWDIENEKRA--------------FQ--------I----NMPKKLSSLKWNIK 178 (568)
T ss_pred CCcEEEEEECCCCCeEEEEEeCCCeEEEEECCCCcEE--------------EE--------E----ecCCcEEEEEECCC
Confidence 9999999999966567789999999999999987521 00 0 02346899999994
Q ss_pred CCcEEEEEeCCCeEEEEeCCCCCCccccCCCCCCCCccccccccccccCCccc----cceEEEEEcCCCCEEEEEeCCC-
Q 004477 227 RPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSS----LHLTHVTFSPNGEEVLLSYSGE- 301 (751)
Q Consensus 227 ~~~~l~sgs~D~~IriwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~----~~vt~v~fspdg~~Ll~~s~d~- 301 (751)
+.+|++++.|+.|+|||+++++.+..+ .+|.+ ..+....|++++.+|++++.++
T Consensus 179 -G~lLat~s~D~~IrIwD~Rsg~~i~tl--------------------~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~ 237 (568)
T PTZ00420 179 -GNLLSGTCVGKHMHIIDPRKQEIASSF--------------------HIHDGGKNTKNIWIDGLGGDDNYILSTGFSKN 237 (568)
T ss_pred -CCEEEEEecCCEEEEEECCCCcEEEEE--------------------ecccCCceeEEEEeeeEcCCCCEEEEEEcCCC
Confidence 789999999999999999987644322 12222 1134456779999999988764
Q ss_pred ---cEEEEECCC
Q 004477 302 ---HVYLMDVNH 310 (751)
Q Consensus 302 ---~I~lwdl~~ 310 (751)
+|+|||+.+
T Consensus 238 ~~R~VkLWDlr~ 249 (568)
T PTZ00420 238 NMREMKLWDLKN 249 (568)
T ss_pred CccEEEEEECCC
Confidence 799999887
No 78
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.92 E-value=8e-24 Score=231.71 Aligned_cols=223 Identities=20% Similarity=0.292 Sum_probs=178.3
Q ss_pred hccccccEEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEecccCCcceEEEEEecCCCCcEEEEEECC
Q 004477 37 VRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGD 116 (751)
Q Consensus 37 i~~~~~~~~L~gH~~~V~~l~~s~dg~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~D 116 (751)
+=.-+++++|.||.+.|..|.||.+ ++|+|+|.|++|+||++....++..| .|..-|+||+|+|.. +++|+||+-|
T Consensus 356 ~f~ekP~~ef~GHt~DILDlSWSKn-~fLLSSSMDKTVRLWh~~~~~CL~~F--~HndfVTcVaFnPvD-DryFiSGSLD 431 (712)
T KOG0283|consen 356 VFSEKPFCEFKGHTADILDLSWSKN-NFLLSSSMDKTVRLWHPGRKECLKVF--SHNDFVTCVAFNPVD-DRYFISGSLD 431 (712)
T ss_pred cccccchhhhhccchhheecccccC-CeeEeccccccEEeecCCCcceeeEE--ecCCeeEEEEecccC-CCcEeecccc
Confidence 3344789999999999999999965 58999999999999999999999998 699999999999985 8999999999
Q ss_pred CcEEEEECCCCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCCCCCCCCCCccceE
Q 004477 117 AEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNI 196 (751)
Q Consensus 117 g~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~~~~~~~~~~~~ 196 (751)
+.||||++... .+..+..-..-|++++|.| +|...+.|+.+|.+++|+++..+... ..
T Consensus 432 ~KvRiWsI~d~-----------~Vv~W~Dl~~lITAvcy~P-dGk~avIGt~~G~C~fY~t~~lk~~~----------~~ 489 (712)
T KOG0283|consen 432 GKVRLWSISDK-----------KVVDWNDLRDLITAVCYSP-DGKGAVIGTFNGYCRFYDTEGLKLVS----------DF 489 (712)
T ss_pred cceEEeecCcC-----------eeEeehhhhhhheeEEecc-CCceEEEEEeccEEEEEEccCCeEEE----------ee
Confidence 99999999852 2444445558899999999 58999999999999999998765321 11
Q ss_pred EEecccCceecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCccccCCCCCCCCccccccccccccCC
Q 004477 197 LLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHG 276 (751)
Q Consensus 197 l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 276 (751)
-+.+..+.. ..+. .|+.+.|.|.++..+++.+.|..|||||.+....+.++.+.
T Consensus 490 ~I~~~~~Kk------~~~~-rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~------------------- 543 (712)
T KOG0283|consen 490 HIRLHNKKK------KQGK-RITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKGF------------------- 543 (712)
T ss_pred eEeeccCcc------ccCc-eeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhhhccc-------------------
Confidence 122222211 1133 79999999988888999999999999999876654443210
Q ss_pred ccccceEEEEEcCCCCEEEEEeCCCcEEEEECCCC
Q 004477 277 RSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHA 311 (751)
Q Consensus 277 ~~~~~vt~v~fspdg~~Ll~~s~d~~I~lwdl~~~ 311 (751)
+....-....|+.||++|++++.|..||||++...
T Consensus 544 ~n~~SQ~~Asfs~Dgk~IVs~seDs~VYiW~~~~~ 578 (712)
T KOG0283|consen 544 RNTSSQISASFSSDGKHIVSASEDSWVYIWKNDSF 578 (712)
T ss_pred ccCCcceeeeEccCCCEEEEeecCceEEEEeCCCC
Confidence 11112467889999999999999999999998763
No 79
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.92 E-value=1.6e-24 Score=218.41 Aligned_cols=264 Identities=22% Similarity=0.285 Sum_probs=209.4
Q ss_pred HhhhccCcCcccccccccchhhhccccccEEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEecccCCc
Q 004477 15 LDTRHTDTRPDVNHSLQMHSSLVRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSA 94 (751)
Q Consensus 15 l~~r~~~~~~~~~~~l~~~~~~i~~~~~~~~L~gH~~~V~~l~~s~dg~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~ 94 (751)
++.+..--...+++.+++|.....+...+.+|.|-.+.|+.+.|.++++++++++.|+.+++|++...+..+++ .||++
T Consensus 184 l~~sdtlatgg~Dr~Ik~W~v~~~k~~~~~tLaGs~g~it~~d~d~~~~~~iAas~d~~~r~Wnvd~~r~~~TL-sGHtd 262 (459)
T KOG0288|consen 184 LRNSDTLATGGSDRIIKLWNVLGEKSELISTLAGSLGNITSIDFDSDNKHVIAASNDKNLRLWNVDSLRLRHTL-SGHTD 262 (459)
T ss_pred ccCcchhhhcchhhhhhhhhcccchhhhhhhhhccCCCcceeeecCCCceEEeecCCCceeeeeccchhhhhhh-ccccc
Confidence 44444444567889999999999999999999999999999999999999999999999999999999999999 89999
Q ss_pred ceEEEEEecCCCCcEEEEEECCCcEEEEECCCCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCCcEEE
Q 004477 95 NVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQ 174 (751)
Q Consensus 95 ~V~~v~fsp~s~~~~l~sgs~Dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~i 174 (751)
.|+++.|.... ..+++|+.|.+|++||+... .| .++.. ....+..|+.+ +..++||-.|++||+
T Consensus 263 kVt~ak~~~~~--~~vVsgs~DRtiK~WDl~k~--~C--------~kt~l-~~S~cnDI~~~---~~~~~SgH~DkkvRf 326 (459)
T KOG0288|consen 263 KVTAAKFKLSH--SRVVSGSADRTIKLWDLQKA--YC--------SKTVL-PGSQCNDIVCS---ISDVISGHFDKKVRF 326 (459)
T ss_pred ceeeehhhccc--cceeeccccchhhhhhhhhh--he--------ecccc-ccccccceEec---ceeeeecccccceEE
Confidence 99999999883 45999999999999999853 22 33322 23445666664 367889999999999
Q ss_pred EecCCCCCCCCCCCCCCccceEEEecccCceecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCcccc
Q 004477 175 HDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSC 254 (751)
Q Consensus 175 wDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~~~~ 254 (751)
||.|....... .+ ....|++++.+++ +..+++++.|.++.+.|+|+......+
T Consensus 327 wD~Rs~~~~~s-------------------------v~-~gg~vtSl~ls~~-g~~lLsssRDdtl~viDlRt~eI~~~~ 379 (459)
T KOG0288|consen 327 WDIRSADKTRS-------------------------VP-LGGRVTSLDLSMD-GLELLSSSRDDTLKVIDLRTKEIRQTF 379 (459)
T ss_pred EeccCCceeeE-------------------------ee-cCcceeeEeeccC-CeEEeeecCCCceeeeecccccEEEEe
Confidence 99999864311 11 1247999999994 788888899999999999987643332
Q ss_pred CCCCCCCCccccccccccccCCccccceEEEEEcCCCCEEEEEeCCCcEEEEECCCCCcceeeeecCCC--ceeEEeCCC
Q 004477 255 QKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVGDA--SKIMSFTPT 332 (751)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~~g~~~~~vt~v~fspdg~~Ll~~s~d~~I~lwdl~~~~~~~~~~~~~~~--~~~~~~sp~ 332 (751)
.. ... ....-++.+.|||++.|+++|+.||.|+||++.+++...+....... +..+.|.|.
T Consensus 380 sA-------------~g~----k~asDwtrvvfSpd~~YvaAGS~dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~~W~~s 442 (459)
T KOG0288|consen 380 SA-------------EGF----KCASDWTRVVFSPDGSYVAAGSADGSVYIWSVFTGKLEKVLSLSTSNAAITSLSWNPS 442 (459)
T ss_pred ec-------------ccc----ccccccceeEECCCCceeeeccCCCcEEEEEccCceEEEEeccCCCCcceEEEEEcCC
Confidence 11 101 11113889999999999999999999999999998876666555444 778889998
Q ss_pred CCCcccC
Q 004477 333 LNGLELQ 339 (751)
Q Consensus 333 ~~~~~~~ 339 (751)
+.++...
T Consensus 443 G~~Llsa 449 (459)
T KOG0288|consen 443 GSGLLSA 449 (459)
T ss_pred Cchhhcc
Confidence 7776544
No 80
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.91 E-value=9e-23 Score=199.02 Aligned_cols=202 Identities=12% Similarity=0.191 Sum_probs=155.9
Q ss_pred EEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEecccCCcceEEEEEecCCCCcEEEEEECCCcEEEEECCCCCCCCC
Q 004477 53 VNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGL 132 (751)
Q Consensus 53 V~~l~~s~dg~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~Dg~V~vwd~~~~~~~~~ 132 (751)
-+|+.||+.|.+||+|..||.|.|||+.+...-..+ .+|..+|.|++|+++ |++|+|+|.|..|.+||+..+
T Consensus 26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar~l-saH~~pi~sl~WS~d--gr~LltsS~D~si~lwDl~~g----- 97 (405)
T KOG1273|consen 26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFRIARML-SAHVRPITSLCWSRD--GRKLLTSSRDWSIKLWDLLKG----- 97 (405)
T ss_pred cceEEeccCcceeeeeccCCcEEEEEccccchhhhh-hccccceeEEEecCC--CCEeeeecCCceeEEEeccCC-----
Confidence 679999999999999999999999999988766666 899999999999999 899999999999999999975
Q ss_pred CCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCCCCCCCCCCccceEEEecccCceecccCCC
Q 004477 133 DDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPP 212 (751)
Q Consensus 133 ~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 212 (751)
.+++.+. ...+|+.+.|+|.+.+.++.+-.+..-.+-++..+... +.. .....
T Consensus 98 -----s~l~rir-f~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~-------------~Lp--------~d~d~ 150 (405)
T KOG1273|consen 98 -----SPLKRIR-FDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHS-------------VLP--------KDDDG 150 (405)
T ss_pred -----CceeEEE-ccCccceeeeccccCCeEEEEEecCCcEEEEecCCcee-------------ecc--------CCCcc
Confidence 3455554 57899999999987777777766666666666543311 000 00000
Q ss_pred CCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCccccCCCCCCCCccccccccccccCCccccceEEEEEcCCCC
Q 004477 213 KQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGE 292 (751)
Q Consensus 213 ~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~vt~v~fspdg~ 292 (751)
.......+..|.+ .|++|++|...|.+.+||..+.+.+.++... ....|..+.|+..|+
T Consensus 151 dln~sas~~~fdr-~g~yIitGtsKGkllv~~a~t~e~vas~rit--------------------s~~~IK~I~~s~~g~ 209 (405)
T KOG1273|consen 151 DLNSSASHGVFDR-RGKYIITGTSKGKLLVYDAETLECVASFRIT--------------------SVQAIKQIIVSRKGR 209 (405)
T ss_pred ccccccccccccC-CCCEEEEecCcceEEEEecchheeeeeeeec--------------------hheeeeEEEEeccCc
Confidence 0111122335677 5899999999999999999988765543210 111488999999999
Q ss_pred EEEEEeCCCcEEEEECCC
Q 004477 293 EVLLSYSGEHVYLMDVNH 310 (751)
Q Consensus 293 ~Ll~~s~d~~I~lwdl~~ 310 (751)
.|+.++.|..|+.|++..
T Consensus 210 ~liiNtsDRvIR~ye~~d 227 (405)
T KOG1273|consen 210 FLIINTSDRVIRTYEISD 227 (405)
T ss_pred EEEEecCCceEEEEehhh
Confidence 999999999999999876
No 81
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.91 E-value=8.5e-23 Score=198.52 Aligned_cols=267 Identities=14% Similarity=0.132 Sum_probs=196.2
Q ss_pred cCCCcEEEEEECC-CCCEEEEEeCCCcEEEEeCCC-CeEEEEecccCCcceEEEEEecCCCCcEEEEEECCCcEEEEECC
Q 004477 48 GHQGCVNAISWNS-KGSLLISGSDDTHINVWSYSS-RKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLS 125 (751)
Q Consensus 48 gH~~~V~~l~~s~-dg~~LaSgs~Dg~I~IWd~~~-~~~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~Dg~V~vwd~~ 125 (751)
.-.+.|.+|+||| ...+|+.||.|++|++|++.. |..+.+....|.++|.+++|+.+ |..+++|+.|+.+++||+.
T Consensus 25 pP~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~Wsdd--gskVf~g~~Dk~~k~wDL~ 102 (347)
T KOG0647|consen 25 PPEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDD--GSKVFSGGCDKQAKLWDLA 102 (347)
T ss_pred CcccchheeEeccccCceEEecccCCceEEEEEecCCcccchhhhccCCCeEEEEEccC--CceEEeeccCCceEEEEcc
Confidence 3567899999999 566777999999999999986 55555555789999999999999 8999999999999999999
Q ss_pred CCCCCCCCCCCCCCceeecccCCceeEEEEecCCCC--EEEEEeCCCcEEEEecCCCCCCCCCCC---------------
Q 004477 126 RFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPH--VVWSASEDGTLRQHDFRQGSSCPPAGS--------------- 188 (751)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~--~l~s~s~Dg~I~iwDlr~~~~~~~~~~--------------- 188 (751)
+++ +..+..|..+|+.+.|-+ +.. .|+|||.|++|+.||+|...+......
T Consensus 103 S~Q-----------~~~v~~Hd~pvkt~~wv~-~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~LPeRvYa~Dv~~pm~v 170 (347)
T KOG0647|consen 103 SGQ-----------VSQVAAHDAPVKTCHWVP-GMNYQCLVTGSWDKTLKFWDTRSSNPVATLQLPERVYAADVLYPMAV 170 (347)
T ss_pred CCC-----------eeeeeecccceeEEEEec-CCCcceeEecccccceeecccCCCCeeeeeeccceeeehhccCceeE
Confidence 753 667788999999999987 434 899999999999999998765421111
Q ss_pred -CCCccceEEEecccCceecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCccccCCCCCCCCccccc
Q 004477 189 -SHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYF 267 (751)
Q Consensus 189 -~~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~~~~~~~~~~~~~~~~~ 267 (751)
...+....++++..+..............+.|++..++ ....+.|+.+|.+-|..+....+...+. -+|.+.-
T Consensus 171 Vata~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d-~~~~alGsiEGrv~iq~id~~~~~~nFt-----FkCHR~~ 244 (347)
T KOG0647|consen 171 VATAERHIAVYNLENPPTEFKRIESPLKWQTRCVACFQD-KDGFALGSIEGRVAIQYIDDPNPKDNFT-----FKCHRST 244 (347)
T ss_pred EEecCCcEEEEEcCCCcchhhhhcCcccceeeEEEEEec-CCceEeeeecceEEEEecCCCCccCcee-----EEEeccC
Confidence 11222344566655544322222234567889999985 5666999999999999888754322211 1222211
Q ss_pred cccccccCCccccceEEEEEcCCCCEEEEEeCCCcEEEEECCCCCcceeeeecCCCceeEEeCCCCCCcccC
Q 004477 268 CPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVGDASKIMSFTPTLNGLELQ 339 (751)
Q Consensus 268 ~~~~~~~~g~~~~~vt~v~fspdg~~Ll~~s~d~~I~lwdl~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~ 339 (751)
.+ ....-+.|++|+|+|.-..|++.++||++.+||-+...+......+..++...+|+.++.-.+.+
T Consensus 245 ~~-----~~~~VYaVNsi~FhP~hgtlvTaGsDGtf~FWDkdar~kLk~s~~~~qpItcc~fn~~G~ifaYA 311 (347)
T KOG0647|consen 245 NS-----VNDDVYAVNSIAFHPVHGTLVTAGSDGTFSFWDKDARTKLKTSETHPQPITCCSFNRNGSIFAYA 311 (347)
T ss_pred CC-----CCCceEEecceEeecccceEEEecCCceEEEecchhhhhhhccCcCCCccceeEecCCCCEEEEE
Confidence 11 00123579999999999999999999999999988755555556667777778887766555444
No 82
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.91 E-value=4.7e-23 Score=205.88 Aligned_cols=253 Identities=20% Similarity=0.282 Sum_probs=187.8
Q ss_pred cccccccchhhhccccccEEeccCCCcEEEEEECC---CCCEEEEEeCCCcEEEEeCCCCeEEEE-e--cccCCcceEEE
Q 004477 26 VNHSLQMHSSLVRRLSQERELEGHQGCVNAISWNS---KGSLLISGSDDTHINVWSYSSRKLLHS-I--ETGHSANVFCT 99 (751)
Q Consensus 26 ~~~~l~~~~~~i~~~~~~~~L~gH~~~V~~l~~s~---dg~~LaSgs~Dg~I~IWd~~~~~~~~~-l--~~~h~~~V~~v 99 (751)
|+..+++|+ .+.+.++++.||.++|..++|-- ....|+++|.|.++++|..+.+..... + ..||...|-+|
T Consensus 123 YDg~~riWd---~~Gk~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~~~~~~~~~~~~GHk~~V~sV 199 (423)
T KOG0313|consen 123 YDGTSRIWD---LKGKSIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVGENKVKALKVCRGHKRSVDSV 199 (423)
T ss_pred cCCeeEEEe---cCCceEEEEecCCcceeeeEEEecCCccceEEEecCCceEEEEEecCchhhhhHHhHhcccccceeEE
Confidence 445555554 45678899999999999988854 334699999999999999876653321 1 24999999999
Q ss_pred EEecCCCCcEEEEEECCCcEEEEECCCCCCCCC---------------CCCCCCCceeecccCCceeEEEEecCCCCEEE
Q 004477 100 KFVPETSDELVVSGAGDAEVRLFNLSRFSGRGL---------------DDNAITPSALYQCHTRRVKKLAVEVGNPHVVW 164 (751)
Q Consensus 100 ~fsp~s~~~~l~sgs~Dg~V~vwd~~~~~~~~~---------------~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~ 164 (751)
...++ +..++|||.|.+|+||+........+ ......|+.++.+|+.+|.++.|++ ...+.
T Consensus 200 sv~~s--gtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d--~~v~y 275 (423)
T KOG0313|consen 200 SVDSS--GTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVWSD--ATVIY 275 (423)
T ss_pred EecCC--CCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEecccccceeeEEEcC--CCceE
Confidence 99999 89999999999999999432111111 1222467889999999999999986 46778
Q ss_pred EEeCCCcEEEEecCCCCCCCCCCCCCCccceEEEecccCceecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEe
Q 004477 165 SASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYD 244 (751)
Q Consensus 165 s~s~Dg~I~iwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD 244 (751)
|+|.|.+|+.||+.++..... + .....++|++.+| ..++|++|+.|..||+||
T Consensus 276 S~SwDHTIk~WDletg~~~~~-----------~---------------~~~ksl~~i~~~~-~~~Ll~~gssdr~irl~D 328 (423)
T KOG0313|consen 276 SVSWDHTIKVWDLETGGLKST-----------L---------------TTNKSLNCISYSP-LSKLLASGSSDRHIRLWD 328 (423)
T ss_pred eecccceEEEEEeecccceee-----------e---------------ecCcceeEeeccc-ccceeeecCCCCceeecC
Confidence 999999999999999864311 0 1245789999999 589999999999999999
Q ss_pred CCCCCCccccCCCCCCCCccccccccccccCCccccceEEEEEcCCCC-EEEEEeCCCcEEEEECCCCC-cceeeeecCC
Q 004477 245 RRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGE-EVLLSYSGEHVYLMDVNHAG-GRAMRYTVGD 322 (751)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~vt~v~fspdg~-~Ll~~s~d~~I~lwdl~~~~-~~~~~~~~~~ 322 (751)
.|++.... ..+.| .||.+ .|.++.|+|... +|++++.|+++++||+++.. .......+.+
T Consensus 329 PR~~~gs~----------v~~s~-------~gH~n-wVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~plydI~~h~D 390 (423)
T KOG0313|consen 329 PRTGDGSV----------VSQSL-------IGHKN-WVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKAPLYDIAGHND 390 (423)
T ss_pred CCCCCCce----------eEEee-------ecchh-hhhheecCCCCceEEEEEecCCeEEEEEeccCCCcceeeccCCc
Confidence 99864211 11122 46777 799999999665 56778889999999999954 2223333433
Q ss_pred CceeEEeC
Q 004477 323 ASKIMSFT 330 (751)
Q Consensus 323 ~~~~~~~s 330 (751)
.+-.+.|.
T Consensus 391 Kvl~vdW~ 398 (423)
T KOG0313|consen 391 KVLSVDWN 398 (423)
T ss_pred eEEEEecc
Confidence 33334444
No 83
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.91 E-value=2.1e-22 Score=204.14 Aligned_cols=201 Identities=19% Similarity=0.324 Sum_probs=172.6
Q ss_pred CcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEecccCCcceEEEEEecCCCCcEEEEEECCCcEEEEECCCCCCC
Q 004477 51 GCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGR 130 (751)
Q Consensus 51 ~~V~~l~~s~dg~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~Dg~V~vwd~~~~~~~ 130 (751)
..+.++...|....+++|+.|.++.++|...++.+..+ .||...|+.+.|+|+ ...+++++.|..|+||.....+
T Consensus 220 pgi~ald~~~s~~~ilTGG~d~~av~~d~~s~q~l~~~-~Gh~kki~~v~~~~~--~~~v~~aSad~~i~vws~~~~s-- 294 (506)
T KOG0289|consen 220 PGITALDIIPSSSKILTGGEDKTAVLFDKPSNQILATL-KGHTKKITSVKFHKD--LDTVITASADEIIRVWSVPLSS-- 294 (506)
T ss_pred CCeeEEeecCCCCcceecCCCCceEEEecchhhhhhhc-cCcceEEEEEEeccc--hhheeecCCcceEEeecccccc--
Confidence 46888988888889999999999999999999999888 899999999999999 6899999999999999998652
Q ss_pred CCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCCCCCCCCCCccceEEEecccCceecccC
Q 004477 131 GLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLAD 210 (751)
Q Consensus 131 ~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 210 (751)
......+|..+|+.+..+| .+.+|++++.||+..+.|++++... .++.+
T Consensus 295 --------~~~~~~~h~~~V~~ls~h~-tgeYllsAs~d~~w~Fsd~~~g~~l-----------t~vs~----------- 343 (506)
T KOG0289|consen 295 --------EPTSSRPHEEPVTGLSLHP-TGEYLLSASNDGTWAFSDISSGSQL-----------TVVSD----------- 343 (506)
T ss_pred --------Cccccccccccceeeeecc-CCcEEEEecCCceEEEEEccCCcEE-----------EEEee-----------
Confidence 3566788999999999999 6789999999999999999998633 11111
Q ss_pred CCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCccccCCCCCCCCccccccccccccCCccccceEEEEEcCC
Q 004477 211 PPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPN 290 (751)
Q Consensus 211 ~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~vt~v~fspd 290 (751)
......+++.+|+| |+.+|.+|..|+.|+|||+.....+..+ .+|.+ +|+.++|+.+
T Consensus 344 -~~s~v~~ts~~fHp-DgLifgtgt~d~~vkiwdlks~~~~a~F--------------------pght~-~vk~i~FsEN 400 (506)
T KOG0289|consen 344 -ETSDVEYTSAAFHP-DGLIFGTGTPDGVVKIWDLKSQTNVAKF--------------------PGHTG-PVKAISFSEN 400 (506)
T ss_pred -ccccceeEEeeEcC-CceEEeccCCCceEEEEEcCCccccccC--------------------CCCCC-ceeEEEeccC
Confidence 12346799999999 5899999999999999999887644333 23444 6999999999
Q ss_pred CCEEEEEeCCCcEEEEECCC
Q 004477 291 GEEVLLSYSGEHVYLMDVNH 310 (751)
Q Consensus 291 g~~Ll~~s~d~~I~lwdl~~ 310 (751)
|-+|++++.|+.|++||++.
T Consensus 401 GY~Lat~add~~V~lwDLRK 420 (506)
T KOG0289|consen 401 GYWLATAADDGSVKLWDLRK 420 (506)
T ss_pred ceEEEEEecCCeEEEEEehh
Confidence 99999999999999999988
No 84
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.91 E-value=4.4e-23 Score=194.81 Aligned_cols=238 Identities=16% Similarity=0.170 Sum_probs=186.0
Q ss_pred cccccccccchhhhccc-cccEEeccCCCcEEEEEECC--CCCEEEEEeCCCcEEEEeCCCCeE--EEEecccCCcceEE
Q 004477 24 PDVNHSLQMHSSLVRRL-SQERELEGHQGCVNAISWNS--KGSLLISGSDDTHINVWSYSSRKL--LHSIETGHSANVFC 98 (751)
Q Consensus 24 ~~~~~~l~~~~~~i~~~-~~~~~L~gH~~~V~~l~~s~--dg~~LaSgs~Dg~I~IWd~~~~~~--~~~l~~~h~~~V~~ 98 (751)
...+..+++....-... +++.+|.||.|+|+.++|.. -|.+|||++.||.|+||.-.+++- .... ..|...|++
T Consensus 29 csSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWke~~g~w~k~~e~-~~h~~SVNs 107 (299)
T KOG1332|consen 29 CSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWKEENGRWTKAYEH-AAHSASVNS 107 (299)
T ss_pred ecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEEecCCCchhhhhhh-hhhccccee
Confidence 45677777776554443 78999999999999999977 899999999999999999887743 3334 689999999
Q ss_pred EEEecCCCCcEEEEEECCCcEEEEECCCCCCCCCCCCCCCCceeecccCCceeEEEEecC---C----------CCEEEE
Q 004477 99 TKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVG---N----------PHVVWS 165 (751)
Q Consensus 99 v~fsp~s~~~~l~sgs~Dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~---~----------~~~l~s 165 (751)
|+|.|..-|-+|++++.||.|.|.+.+...+- ...+...+|.-.|++++|.|. + .+.|+|
T Consensus 108 V~wapheygl~LacasSDG~vsvl~~~~~g~w-------~t~ki~~aH~~GvnsVswapa~~~g~~~~~~~~~~~krlvS 180 (299)
T KOG1332|consen 108 VAWAPHEYGLLLACASSDGKVSVLTYDSSGGW-------TTSKIVFAHEIGVNSVSWAPASAPGSLVDQGPAAKVKRLVS 180 (299)
T ss_pred ecccccccceEEEEeeCCCcEEEEEEcCCCCc-------cchhhhhccccccceeeecCcCCCccccccCcccccceeec
Confidence 99999977789999999999999999864221 335667899999999999983 1 156999
Q ss_pred EeCCCcEEEEecCCCCCCCCCCCCCCccceEEEecccCceecccCCCCCccceEEEEEeCCCC---cEEEEEeCCCeEEE
Q 004477 166 ASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRP---HLLLVGGSDAFARL 242 (751)
Q Consensus 166 ~s~Dg~I~iwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~---~~l~sgs~D~~Iri 242 (751)
|+.|..|+||+....+=. .-.++.+|...|..++|.|.-+ .+|++++.||+|.|
T Consensus 181 gGcDn~VkiW~~~~~~w~-----------------------~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viI 237 (299)
T KOG1332|consen 181 GGCDNLVKIWKFDSDSWK-----------------------LERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVII 237 (299)
T ss_pred cCCccceeeeecCCcchh-----------------------hhhhhhhcchhhhhhhhccccCCCceeeEEecCCCcEEE
Confidence 999999999998875311 0122456899999999999642 58999999999999
Q ss_pred EeCCCCCCccccCCCCCCCCccccccccccccCCccccceEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 004477 243 YDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNH 310 (751)
Q Consensus 243 wD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~vt~v~fspdg~~Ll~~s~d~~I~lwdl~~ 310 (751)
|-.+......+ ...+..| ...+..+.||+.|+.|++++.|+.|.+|.-+.
T Consensus 238 wt~~~e~e~wk-------~tll~~f-----------~~~~w~vSWS~sGn~LaVs~GdNkvtlwke~~ 287 (299)
T KOG1332|consen 238 WTKDEEYEPWK-------KTLLEEF-----------PDVVWRVSWSLSGNILAVSGGDNKVTLWKENV 287 (299)
T ss_pred EEecCccCccc-------ccccccC-----------CcceEEEEEeccccEEEEecCCcEEEEEEeCC
Confidence 98773211100 0011111 11589999999999999999999999997655
No 85
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=99.91 E-value=3.8e-22 Score=206.77 Aligned_cols=249 Identities=22% Similarity=0.331 Sum_probs=198.4
Q ss_pred ccccccchhhhccccccEEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEecccCCcceEEEEEecCCC
Q 004477 27 NHSLQMHSSLVRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETS 106 (751)
Q Consensus 27 ~~~l~~~~~~i~~~~~~~~L~gH~~~V~~l~~s~dg~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~s~ 106 (751)
+..+.+|+.. ..+....+.+|...|..+.|++++++|++++.|+.|++|++.+++.+..+ ..|...|.++.|+|+
T Consensus 30 ~g~i~i~~~~--~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~~~~~~~~~-~~~~~~i~~~~~~~~-- 104 (289)
T cd00200 30 DGTIKVWDLE--TGELLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLETGECVRTL-TGHTSYVSSVAFSPD-- 104 (289)
T ss_pred CcEEEEEEee--CCCcEEEEecCCcceeEEEECCCCCEEEEEcCCCeEEEEEcCcccceEEE-eccCCcEEEEEEcCC--
Confidence 4566666533 33467788999999999999999999999999999999999988788777 689999999999998
Q ss_pred CcEEEEEECCCcEEEEECCCCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCCCCC
Q 004477 107 DELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPA 186 (751)
Q Consensus 107 ~~~l~sgs~Dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~~ 186 (751)
+.++++++.|+.|++||+... ++...+..|...|.+++|+| ++.++++++.||.|++||++.++...
T Consensus 105 ~~~~~~~~~~~~i~~~~~~~~----------~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~~~~i~i~d~~~~~~~~-- 171 (289)
T cd00200 105 GRILSSSSRDKTIKVWDVETG----------KCLTTLRGHTDWVNSVAFSP-DGTFVASSSQDGTIKLWDLRTGKCVA-- 171 (289)
T ss_pred CCEEEEecCCCeEEEEECCCc----------EEEEEeccCCCcEEEEEEcC-cCCEEEEEcCCCcEEEEEccccccce--
Confidence 688998888999999999853 45677778999999999999 46788888889999999998665321
Q ss_pred CCCCCccceEEEecccCceecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCccccCCCCCCCCcccc
Q 004477 187 GSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNY 266 (751)
Q Consensus 187 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~~~~~~~~~~~~~~~~ 266 (751)
....+...+.++.|+|+ +..+++++.|+.|++||++..+.+..+
T Consensus 172 -----------------------~~~~~~~~i~~~~~~~~-~~~l~~~~~~~~i~i~d~~~~~~~~~~------------ 215 (289)
T cd00200 172 -----------------------TLTGHTGEVNSVAFSPD-GEKLLSSSSDGTIKLWDLSTGKCLGTL------------ 215 (289)
T ss_pred -----------------------eEecCccccceEEECCC-cCEEEEecCCCcEEEEECCCCceecch------------
Confidence 11124567999999995 678888888999999999875543322
Q ss_pred ccccccccCCccccceEEEEEcCCCCEEEEEeCCCcEEEEECCCCCcceeeeecCCCceeEEeCCCCCCccc
Q 004477 267 FCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVGDASKIMSFTPTLNGLEL 338 (751)
Q Consensus 267 ~~~~~~~~~g~~~~~vt~v~fspdg~~Ll~~s~d~~I~lwdl~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~ 338 (751)
..|.. .++++.|+|++.++++++.++.|++||+.++........+...+..++|+|+.+.+..
T Consensus 216 --------~~~~~-~i~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~ 278 (289)
T cd00200 216 --------RGHEN-GVNSVAFSPDGYLLASGSEDGTIRVWDLRTGECVQTLSGHTNSVTSLAWSPDGKRLAS 278 (289)
T ss_pred --------hhcCC-ceEEEEEcCCCcEEEEEcCCCcEEEEEcCCceeEEEccccCCcEEEEEECCCCCEEEE
Confidence 12222 5999999999888888888999999999986655555555667788889887554433
No 86
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.91 E-value=4.7e-23 Score=194.62 Aligned_cols=175 Identities=15% Similarity=0.139 Sum_probs=134.8
Q ss_pred EEecccCCcceEEEEEecCCCCcEEEEEECCCcEEEEECCCCCCCCCCCCCCCCceeecccCCceeEEEEe-cCCCCEEE
Q 004477 86 HSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVE-VGNPHVVW 164 (751)
Q Consensus 86 ~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~Dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s-p~~~~~l~ 164 (751)
.++.+.|...|.++...-- |+.|+||+.|++|+|+.++...+ ..++.++.+|.++|..++|. |--+.+|+
T Consensus 4 q~idt~H~D~IHda~lDyy--gkrlATcsSD~tVkIf~v~~n~~-------s~ll~~L~Gh~GPVwqv~wahPk~G~iLA 74 (299)
T KOG1332|consen 4 QTIDTQHEDMIHDAQLDYY--GKRLATCSSDGTVKIFEVRNNGQ-------SKLLAELTGHSGPVWKVAWAHPKFGTILA 74 (299)
T ss_pred eehhhhhhhhhhHhhhhhh--cceeeeecCCccEEEEEEcCCCC-------ceeeeEecCCCCCeeEEeecccccCcEee
Confidence 4555789999998887766 89999999999999999986532 25688999999999999995 44568999
Q ss_pred EEeCCCcEEEEecCCCCCCCCCCCCCCccceEEEecccCceecccCCCCCccceEEEEEeCCC-CcEEEEEeCCCeEEEE
Q 004477 165 SASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTR-PHLLLVGGSDAFARLY 243 (751)
Q Consensus 165 s~s~Dg~I~iwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~-~~~l~sgs~D~~Iriw 243 (751)
|++.||.|.||.-..++ .........|...|++++|.|.+ +-.|++++.||.|.|.
T Consensus 75 ScsYDgkVIiWke~~g~-----------------------w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl 131 (299)
T KOG1332|consen 75 SCSYDGKVIIWKEENGR-----------------------WTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVL 131 (299)
T ss_pred EeecCceEEEEecCCCc-----------------------hhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEE
Confidence 99999999999877653 11233445588999999999964 3478899999999999
Q ss_pred eCCCCCCccccCCCCCCCCccccccccccccCCccccceEEEEEcCC---C-----------CEEEEEeCCCcEEEEECC
Q 004477 244 DRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPN---G-----------EEVLLSYSGEHVYLMDVN 309 (751)
Q Consensus 244 D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~vt~v~fspd---g-----------~~Ll~~s~d~~I~lwdl~ 309 (751)
+.+....- +..... ..|.. .|++++|.|- | +.|++|+.|+.|+||+.+
T Consensus 132 ~~~~~g~w-----------~t~ki~------~aH~~-GvnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~ 193 (299)
T KOG1332|consen 132 TYDSSGGW-----------TTSKIV------FAHEI-GVNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFD 193 (299)
T ss_pred EEcCCCCc-----------cchhhh------hcccc-ccceeeecCcCCCccccccCcccccceeeccCCccceeeeecC
Confidence 98764100 011111 22433 4999999996 5 568899999999999877
Q ss_pred C
Q 004477 310 H 310 (751)
Q Consensus 310 ~ 310 (751)
+
T Consensus 194 ~ 194 (299)
T KOG1332|consen 194 S 194 (299)
T ss_pred C
Confidence 6
No 87
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.91 E-value=4.5e-23 Score=211.11 Aligned_cols=231 Identities=19% Similarity=0.279 Sum_probs=184.0
Q ss_pred cccccEEeccCCCcEEEEEECCCCC-EEEEEeCCCcEEEEeCCCCeE------EEEecccCCcceEEEEEecCCCCcEEE
Q 004477 39 RLSQERELEGHQGCVNAISWNSKGS-LLISGSDDTHINVWSYSSRKL------LHSIETGHSANVFCTKFVPETSDELVV 111 (751)
Q Consensus 39 ~~~~~~~L~gH~~~V~~l~~s~dg~-~LaSgs~Dg~I~IWd~~~~~~------~~~l~~~h~~~V~~v~fsp~s~~~~l~ 111 (751)
...+...|.||+++=..|+|++... .|++|+.|++|++||+..... ......+|...|..++|+|.. ..+|+
T Consensus 166 ~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h-~~lF~ 244 (422)
T KOG0264|consen 166 ECRPDLRLKGHEKEGYGLSWNRQQEGTLLSGSDDHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLH-EDLFG 244 (422)
T ss_pred cCCCceEEEeecccccccccccccceeEeeccCCCcEEEEeccccccCCccccceEEeecCCcceehhhccccc-hhhhe
Confidence 4456669999999888999999544 899999999999999864322 223348999999999999997 78999
Q ss_pred EEECCCcEEEEECCCCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCCCCCCCCCC
Q 004477 112 SGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQ 191 (751)
Q Consensus 112 sgs~Dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~~~~~~~ 191 (751)
+++.|+.+.|||+++.+ .++.+...+|...|.|++|+|.++.+|||||.|++|.+||+|....+
T Consensus 245 sv~dd~~L~iwD~R~~~--------~~~~~~~~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~-------- 308 (422)
T KOG0264|consen 245 SVGDDGKLMIWDTRSNT--------SKPSHSVKAHSAEVNCVAFNPFNEFILATGSADKTVALWDLRNLNKP-------- 308 (422)
T ss_pred eecCCCeEEEEEcCCCC--------CCCcccccccCCceeEEEeCCCCCceEEeccCCCcEEEeechhcccC--------
Confidence 99999999999999631 15678889999999999999999999999999999999999987632
Q ss_pred ccceEEEecccCceecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCccccCCC-CCCCCcccccccc
Q 004477 192 ECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKR-MSPPPCVNYFCPM 270 (751)
Q Consensus 192 ~~~~~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~~~~~~~-~~~~~~~~~~~~~ 270 (751)
+....+|...|.++.|+|.....|++++.|+.+.|||+............ ..|+. +.
T Consensus 309 ----------------lh~~e~H~dev~~V~WSPh~etvLASSg~D~rl~vWDls~ig~eq~~eda~dgppE-ll----- 366 (422)
T KOG0264|consen 309 ----------------LHTFEGHEDEVFQVEWSPHNETVLASSGTDRRLNVWDLSRIGEEQSPEDAEDGPPE-LL----- 366 (422)
T ss_pred ----------------ceeccCCCcceEEEEeCCCCCceeEecccCCcEEEEeccccccccChhhhccCCcc-ee-----
Confidence 44556689999999999998899999999999999999865433221111 11221 11
Q ss_pred ccccCCccccceEEEEEcCCCCEEE-EEeCCCcEEEEECCC
Q 004477 271 HLSEHGRSSLHLTHVTFSPNGEEVL-LSYSGEHVYLMDVNH 310 (751)
Q Consensus 271 ~~~~~g~~~~~vt~v~fspdg~~Ll-~~s~d~~I~lwdl~~ 310 (751)
+.-.||.. .|+.+.|+|+..+++ +.+.|+.+.||.+..
T Consensus 367 -F~HgGH~~-kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s~ 405 (422)
T KOG0264|consen 367 -FIHGGHTA-KVSDFSWNPNEPWTIASVAEDNILQIWQMAE 405 (422)
T ss_pred -EEecCccc-ccccccCCCCCCeEEEEecCCceEEEeeccc
Confidence 11245655 599999999988755 456699999999875
No 88
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.91 E-value=2.1e-22 Score=214.89 Aligned_cols=204 Identities=20% Similarity=0.270 Sum_probs=165.3
Q ss_pred ccccEEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEE-EecccCCcceEE-EEEecCCCCcEEEEEECCC
Q 004477 40 LSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLH-SIETGHSANVFC-TKFVPETSDELVVSGAGDA 117 (751)
Q Consensus 40 ~~~~~~L~gH~~~V~~l~~s~dg~~LaSgs~Dg~I~IWd~~~~~~~~-~l~~~h~~~V~~-v~fsp~s~~~~l~sgs~Dg 117 (751)
.++.++|.||+..|..+++.+. ..++++|.||++++|+-...+.+. ....+|.+-|.+ +++.+ +++-.|++|+.|.
T Consensus 4 Y~ls~~l~gH~~DVr~v~~~~~-~~i~s~sRd~t~~vw~~~~~~~l~~~~~~~~~g~i~~~i~y~e-~~~~~l~~g~~D~ 81 (745)
T KOG0301|consen 4 YKLSHELEGHKSDVRAVAVTDG-VCIISGSRDGTVKVWAKKGKQYLETHAFEGPKGFIANSICYAE-SDKGRLVVGGMDT 81 (745)
T ss_pred ceeEEEeccCccchheeEecCC-eEEeecCCCCceeeeeccCcccccceecccCcceeeccceecc-ccCcceEeecccc
Confidence 4678899999999999988754 489999999999999986555443 333678888888 88887 3345699999999
Q ss_pred cEEEEECCCCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCCCCCCCCCCccceEE
Q 004477 118 EVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNIL 197 (751)
Q Consensus 118 ~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~~~~~~~~~~~~l 197 (751)
+|.+|.+... .|+.++.+|...|.+++... ++. ++|||.|.++++|-...-.
T Consensus 82 ~i~v~~~~~~----------~P~~~LkgH~snVC~ls~~~-~~~-~iSgSWD~TakvW~~~~l~---------------- 133 (745)
T KOG0301|consen 82 TIIVFKLSQA----------EPLYTLKGHKSNVCSLSIGE-DGT-LISGSWDSTAKVWRIGELV---------------- 133 (745)
T ss_pred eEEEEecCCC----------CchhhhhccccceeeeecCC-cCc-eEecccccceEEecchhhh----------------
Confidence 9999999865 78999999999999998765 444 7899999999999765432
Q ss_pred EecccCceecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCccccCCCCCCCCccccccccccccCCc
Q 004477 198 LDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGR 277 (751)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 277 (751)
...++|...|.++..-|. ..+++|+.|.+||+|.-.+ +++.| .||
T Consensus 134 -----------~~l~gH~asVWAv~~l~e--~~~vTgsaDKtIklWk~~~---------------~l~tf-------~gH 178 (745)
T KOG0301|consen 134 -----------YSLQGHTASVWAVASLPE--NTYVTGSADKTIKLWKGGT---------------LLKTF-------SGH 178 (745)
T ss_pred -----------cccCCcchheeeeeecCC--CcEEeccCcceeeeccCCc---------------hhhhh-------ccc
Confidence 124568999999999995 3999999999999998643 34444 567
Q ss_pred cccceEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 004477 278 SSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNH 310 (751)
Q Consensus 278 ~~~~vt~v~fspdg~~Ll~~s~d~~I~lwdl~~ 310 (751)
... |..+++-+++. +++++.||.|++|++..
T Consensus 179 tD~-VRgL~vl~~~~-flScsNDg~Ir~w~~~g 209 (745)
T KOG0301|consen 179 TDC-VRGLAVLDDSH-FLSCSNDGSIRLWDLDG 209 (745)
T ss_pred hhh-eeeeEEecCCC-eEeecCCceEEEEeccC
Confidence 774 99999998864 78999999999999744
No 89
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.90 E-value=4.6e-23 Score=201.13 Aligned_cols=259 Identities=19% Similarity=0.236 Sum_probs=209.5
Q ss_pred cccccccchhhhccccccE------EeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEecccCCcceEEE
Q 004477 26 VNHSLQMHSSLVRRLSQER------ELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCT 99 (751)
Q Consensus 26 ~~~~l~~~~~~i~~~~~~~------~L~gH~~~V~~l~~s~dg~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~V~~v 99 (751)
++.-+-+|.-...+++.-- .|--|.+.|.|+.|+.|...||||+.||.|+||.+.+|.++..|...|+..|+|+
T Consensus 233 vDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKvWri~tG~ClRrFdrAHtkGvt~l 312 (508)
T KOG0275|consen 233 VDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQDGKIKVWRIETGQCLRRFDRAHTKGVTCL 312 (508)
T ss_pred ccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccCcCCcEEEEEEecchHHHHhhhhhccCeeEE
Confidence 4555566665544443222 2344789999999999999999999999999999999999999988999999999
Q ss_pred EEecCCCCcEEEEEECCCcEEEEECCCCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCC
Q 004477 100 KFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQ 179 (751)
Q Consensus 100 ~fsp~s~~~~l~sgs~Dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~ 179 (751)
.|+.+ +..+++++.|.+|+|+-+..+ ++++.+.+|+..|+...|.+ +++.+++++.||+|++|+..+
T Consensus 313 ~FSrD--~SqiLS~sfD~tvRiHGlKSG----------K~LKEfrGHsSyvn~a~ft~-dG~~iisaSsDgtvkvW~~Kt 379 (508)
T KOG0275|consen 313 SFSRD--NSQILSASFDQTVRIHGLKSG----------KCLKEFRGHSSYVNEATFTD-DGHHIISASSDGTVKVWHGKT 379 (508)
T ss_pred EEccC--cchhhcccccceEEEeccccc----------hhHHHhcCccccccceEEcC-CCCeEEEecCCccEEEecCcc
Confidence 99999 789999999999999999965 66899999999999999999 778899999999999999988
Q ss_pred CCCCCCCCCCCCccceEEEecccCceecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCccccCCCCC
Q 004477 180 GSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMS 259 (751)
Q Consensus 180 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~~~~~~~~~ 259 (751)
.++... ....+....|+++-.-|.++..++++...++|.|.++.- +.
T Consensus 380 teC~~T-----------------------fk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~qG-Qv--------- 426 (508)
T KOG0275|consen 380 TECLST-----------------------FKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQG-QV--------- 426 (508)
T ss_pred hhhhhh-----------------------ccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEeccc-eE---------
Confidence 764421 122335678889999898899999999999999998863 22
Q ss_pred CCCccccccccccccCCccccceEEEEEcCCCCEEEEEeCCCcEEEEECCCCCcceeeeecCCCceeEEeCCCCCCcccC
Q 004477 260 PPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVGDASKIMSFTPTLNGLELQ 339 (751)
Q Consensus 260 ~~~~~~~~~~~~~~~~g~~~~~vt~v~fspdg~~Ll~~s~d~~I~lwdl~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~ 339 (751)
++.|..+. ..++..-+++.||.|.++.+.+.|+.+|.|.+.+++.......+...+-.++.+|-.+-++..
T Consensus 427 ----VrsfsSGk-----REgGdFi~~~lSpkGewiYcigED~vlYCF~~~sG~LE~tl~VhEkdvIGl~HHPHqNllAsY 497 (508)
T KOG0275|consen 427 ----VRSFSSGK-----REGGDFINAILSPKGEWIYCIGEDGVLYCFSVLSGKLERTLPVHEKDVIGLTHHPHQNLLASY 497 (508)
T ss_pred ----EeeeccCC-----ccCCceEEEEecCCCcEEEEEccCcEEEEEEeecCceeeeeecccccccccccCcccchhhhh
Confidence 23332221 122246678899999999999999999999999998887777777777778888877665443
No 90
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.90 E-value=8e-23 Score=210.59 Aligned_cols=241 Identities=22% Similarity=0.326 Sum_probs=188.3
Q ss_pred ccccEEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEecccCCcceEEEEEecCCCCcEEEEEECCCcE
Q 004477 40 LSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEV 119 (751)
Q Consensus 40 ~~~~~~L~gH~~~V~~l~~s~dg~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~Dg~V 119 (751)
....+++.-.++.|.++.|-.||++||.|...|.|+|+|+++...+..+ .+|..+|..+.|+|.. +..|++|++|+.+
T Consensus 58 ~~~~k~~srFk~~v~s~~fR~DG~LlaaGD~sG~V~vfD~k~r~iLR~~-~ah~apv~~~~f~~~d-~t~l~s~sDd~v~ 135 (487)
T KOG0310|consen 58 RSVRKTFSRFKDVVYSVDFRSDGRLLAAGDESGHVKVFDMKSRVILRQL-YAHQAPVHVTKFSPQD-NTMLVSGSDDKVV 135 (487)
T ss_pred hhhhhhHHhhccceeEEEeecCCeEEEccCCcCcEEEeccccHHHHHHH-hhccCceeEEEecccC-CeEEEecCCCceE
Confidence 3455666777899999999999999999999999999997776566667 8999999999999995 7889999999999
Q ss_pred EEEECCCCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCCCCCCCCCCccceEEEe
Q 004477 120 RLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLD 199 (751)
Q Consensus 120 ~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~~~~~~~~~~~~l~~ 199 (751)
++||+.+. .....+.+|++.|.+.+|+|.++++++|||.||+||+||+|..... +..
T Consensus 136 k~~d~s~a----------~v~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~-------------v~e 192 (487)
T KOG0310|consen 136 KYWDLSTA----------YVQAELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTSR-------------VVE 192 (487)
T ss_pred EEEEcCCc----------EEEEEecCCcceeEeeccccCCCeEEEecCCCceEEEEEeccCCce-------------eEE
Confidence 99999964 2255789999999999999998999999999999999999986411 111
Q ss_pred cccCceecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCccccCCCCCCCCccccccccccccCCccc
Q 004477 200 LRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSS 279 (751)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 279 (751)
+ .|..+|-++.+-|. +.+|++++. +.|++||+-++...... + ..|..
T Consensus 193 l------------nhg~pVe~vl~lps-gs~iasAgG-n~vkVWDl~~G~qll~~------------~-------~~H~K 239 (487)
T KOG0310|consen 193 L------------NHGCPVESVLALPS-GSLIASAGG-NSVKVWDLTTGGQLLTS------------M-------FNHNK 239 (487)
T ss_pred e------------cCCCceeeEEEcCC-CCEEEEcCC-CeEEEEEecCCceehhh------------h-------hcccc
Confidence 1 25678899999994 567777654 68999999865322110 0 11333
Q ss_pred cceEEEEEcCCCCEEEEEeCCCcEEEEECCCCCcceeeeecCCCceeEEeCCCCCCcccCC
Q 004477 280 LHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVGDASKIMSFTPTLNGLELQP 340 (751)
Q Consensus 280 ~~vt~v~fspdg~~Ll~~s~d~~I~lwdl~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~ 340 (751)
.|||+.+..++..|++++-|+.|++||+.+-+ ..-...-..++-.++.+|+...+...-
T Consensus 240 -tVTcL~l~s~~~rLlS~sLD~~VKVfd~t~~K-vv~s~~~~~pvLsiavs~dd~t~viGm 298 (487)
T KOG0310|consen 240 -TVTCLRLASDSTRLLSGSLDRHVKVFDTTNYK-VVHSWKYPGPVLSIAVSPDDQTVVIGM 298 (487)
T ss_pred -eEEEEEeecCCceEeecccccceEEEEccceE-EEEeeecccceeeEEecCCCceEEEec
Confidence 59999999999999999999999999977732 222223356666778888655554443
No 91
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.90 E-value=1.8e-22 Score=207.97 Aligned_cols=200 Identities=18% Similarity=0.286 Sum_probs=164.4
Q ss_pred CCcEEEEEECCCCC-EEEEEeCCCcEEEEeCCCCeEEEEecccCCcceEEEEEecCCCCcEEEEEECCCcEEEEECCCCC
Q 004477 50 QGCVNAISWNSKGS-LLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFS 128 (751)
Q Consensus 50 ~~~V~~l~~s~dg~-~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~Dg~V~vwd~~~~~ 128 (751)
...|..|+|+|... -+|+++. -.+.||+..+.....++ ......|.++.|..+ |.+|+.|...|.|+|+|+.+.
T Consensus 26 ~~~vssl~fsp~~P~d~aVt~S-~rvqly~~~~~~~~k~~-srFk~~v~s~~fR~D--G~LlaaGD~sG~V~vfD~k~r- 100 (487)
T KOG0310|consen 26 HNSVSSLCFSPKHPYDFAVTSS-VRVQLYSSVTRSVRKTF-SRFKDVVYSVDFRSD--GRLLAAGDESGHVKVFDMKSR- 100 (487)
T ss_pred cCcceeEecCCCCCCceEEecc-cEEEEEecchhhhhhhH-HhhccceeEEEeecC--CeEEEccCCcCcEEEeccccH-
Confidence 46899999999543 3554443 37999999888777777 678899999999999 899999999999999996642
Q ss_pred CCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCCCCCCCCCCccceEEEecccCceecc
Q 004477 129 GRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSL 208 (751)
Q Consensus 129 ~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 208 (751)
..+..+.+|+.+|..+.|+|.+...|++|+.|+.+++||+.+.. + .
T Consensus 101 ---------~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~--------------v-----------~ 146 (487)
T KOG0310|consen 101 ---------VILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAY--------------V-----------Q 146 (487)
T ss_pred ---------HHHHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcE--------------E-----------E
Confidence 34788999999999999999999999999999999999998864 1 1
Q ss_pred cCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCC-CCccccCCCCCCCCccccccccccccCCccccceEEEEE
Q 004477 209 ADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRML-PPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTF 287 (751)
Q Consensus 209 ~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~vt~v~f 287 (751)
....+|+..|.|.+|+|..++++++|+.||+||+||+|.. ..+.++ .++.+|-++.|
T Consensus 147 ~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~v~el----------------------nhg~pVe~vl~ 204 (487)
T KOG0310|consen 147 AELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTSRVVEL----------------------NHGCPVESVLA 204 (487)
T ss_pred EEecCCcceeEeeccccCCCeEEEecCCCceEEEEEeccCCceeEEe----------------------cCCCceeeEEE
Confidence 2334588999999999988899999999999999999976 222222 12336999999
Q ss_pred cCCCCEEEEEeCCCcEEEEECCCC
Q 004477 288 SPNGEEVLLSYSGEHVYLMDVNHA 311 (751)
Q Consensus 288 spdg~~Ll~~s~d~~I~lwdl~~~ 311 (751)
-|.|..++++++ ..|++||+.++
T Consensus 205 lpsgs~iasAgG-n~vkVWDl~~G 227 (487)
T KOG0310|consen 205 LPSGSLIASAGG-NSVKVWDLTTG 227 (487)
T ss_pred cCCCCEEEEcCC-CeEEEEEecCC
Confidence 999998777765 59999999874
No 92
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.90 E-value=6e-23 Score=206.62 Aligned_cols=239 Identities=16% Similarity=0.192 Sum_probs=182.9
Q ss_pred hccccccEEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEecccCCcceEEEEEecCCCCcEEEEEECC
Q 004477 37 VRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGD 116 (751)
Q Consensus 37 i~~~~~~~~L~gH~~~V~~l~~s~dg~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~D 116 (751)
...+++.++|.||..+|..+.||||.++|++|+.|..+++||+.+|.+.+.+..+|...+.|++|.|+ |..+++|+.|
T Consensus 256 d~~~kl~~tlvgh~~~V~yi~wSPDdryLlaCg~~e~~~lwDv~tgd~~~~y~~~~~~S~~sc~W~pD--g~~~V~Gs~d 333 (519)
T KOG0293|consen 256 DVHFKLKKTLVGHSQPVSYIMWSPDDRYLLACGFDEVLSLWDVDTGDLRHLYPSGLGFSVSSCAWCPD--GFRFVTGSPD 333 (519)
T ss_pred CcceeeeeeeecccCceEEEEECCCCCeEEecCchHheeeccCCcchhhhhcccCcCCCcceeEEccC--CceeEecCCC
Confidence 34478999999999999999999999999999999999999999999999887788899999999999 8999999999
Q ss_pred CcEEEEECCCCCCCCCCCCCCCCceeecccC-CceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCCCCCC--------
Q 004477 117 AEVRLFNLSRFSGRGLDDNAITPSALYQCHT-RRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAG-------- 187 (751)
Q Consensus 117 g~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~-~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~~~-------- 187 (751)
++|..||+... .+...++-. ..|.+++.++ ++..+++...|..|++++..+........
T Consensus 334 r~i~~wdlDgn-----------~~~~W~gvr~~~v~dlait~-Dgk~vl~v~~d~~i~l~~~e~~~dr~lise~~~its~ 401 (519)
T KOG0293|consen 334 RTIIMWDLDGN-----------ILGNWEGVRDPKVHDLAITY-DGKYVLLVTVDKKIRLYNREARVDRGLISEEQPITSF 401 (519)
T ss_pred CcEEEecCCcc-----------hhhcccccccceeEEEEEcC-CCcEEEEEecccceeeechhhhhhhccccccCceeEE
Confidence 99999999853 233343332 5689999999 66777788899999999987654321100
Q ss_pred CCCC----------ccceEEEecccCceecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCccccCCC
Q 004477 188 SSHQ----------ECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKR 257 (751)
Q Consensus 188 ~~~~----------~~~~~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~~~~~~~ 257 (751)
.... .....+|++............+....+-.-+|-..+..++++|+.|+.|+||++++++++..+
T Consensus 402 ~iS~d~k~~LvnL~~qei~LWDl~e~~lv~kY~Ghkq~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~sgkll~~L--- 478 (519)
T KOG0293|consen 402 SISKDGKLALVNLQDQEIHLWDLEENKLVRKYFGHKQGHFIIRSCFGGGNDKFIASGSEDSKVYIWHRISGKLLAVL--- 478 (519)
T ss_pred EEcCCCcEEEEEcccCeeEEeecchhhHHHHhhcccccceEEEeccCCCCcceEEecCCCceEEEEEccCCceeEee---
Confidence 0011 112345666643332222223333445455676655689999999999999999999877654
Q ss_pred CCCCCccccccccccccCCccccceEEEEEcCCC-CEEEEEeCCCcEEEEECCC
Q 004477 258 MSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNG-EEVLLSYSGEHVYLMDVNH 310 (751)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~g~~~~~vt~v~fspdg-~~Ll~~s~d~~I~lwdl~~ 310 (751)
.||.. .|++|+|+|.. .++++++.||+|+||....
T Consensus 479 -----------------sGHs~-~vNcVswNP~~p~m~ASasDDgtIRIWg~~~ 514 (519)
T KOG0293|consen 479 -----------------SGHSK-TVNCVSWNPADPEMFASASDDGTIRIWGPSD 514 (519)
T ss_pred -----------------cCCcc-eeeEEecCCCCHHHhhccCCCCeEEEecCCc
Confidence 45554 59999999955 5678888899999998765
No 93
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.90 E-value=7.6e-22 Score=201.90 Aligned_cols=207 Identities=21% Similarity=0.290 Sum_probs=170.0
Q ss_pred cEEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEE-Eec----------------ccCCcceEEEEEecCC
Q 004477 43 ERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLH-SIE----------------TGHSANVFCTKFVPET 105 (751)
Q Consensus 43 ~~~L~gH~~~V~~l~~s~dg~~LaSgs~Dg~I~IWd~~~~~~~~-~l~----------------~~h~~~V~~v~fsp~s 105 (751)
...+..|.-.|.||+++|++++..+++.|++|.=|++.+++... .+. .+|...|.+++.+|+
T Consensus 135 ~~~~~~H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~D- 213 (479)
T KOG0299|consen 135 FRVIGKHQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSD- 213 (479)
T ss_pred ceeeccccCcceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCC-
Confidence 56778899999999999999999999999999999998887441 111 278899999999999
Q ss_pred CCcEEEEEECCCcEEEEECCCCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCCCC
Q 004477 106 SDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPP 185 (751)
Q Consensus 106 ~~~~l~sgs~Dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~ 185 (751)
+++|++|+.|..|.||+..+. ++++.+.+|.+.|.+++|-- +.+-+.+++.|++|++|++.....
T Consensus 214 -gkylatgg~d~~v~Iw~~~t~----------ehv~~~~ghr~~V~~L~fr~-gt~~lys~s~Drsvkvw~~~~~s~--- 278 (479)
T KOG0299|consen 214 -GKYLATGGRDRHVQIWDCDTL----------EHVKVFKGHRGAVSSLAFRK-GTSELYSASADRSVKVWSIDQLSY--- 278 (479)
T ss_pred -CcEEEecCCCceEEEecCccc----------chhhcccccccceeeeeeec-CccceeeeecCCceEEEehhHhHH---
Confidence 899999999999999999975 67888999999999999976 677888999999999999887542
Q ss_pred CCCCCCccceEEEecccCceecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCccccCCCCCCCCccc
Q 004477 186 AGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVN 265 (751)
Q Consensus 186 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~~~~~~~~~~~~~~~ 265 (751)
+....+|...|..|+... ..+.+.+|+.|+++++|++.....+
T Consensus 279 ----------------------vetlyGHqd~v~~IdaL~-reR~vtVGgrDrT~rlwKi~eesql-------------- 321 (479)
T KOG0299|consen 279 ----------------------VETLYGHQDGVLGIDALS-RERCVTVGGRDRTVRLWKIPEESQL-------------- 321 (479)
T ss_pred ----------------------HHHHhCCccceeeechhc-ccceEEeccccceeEEEecccccee--------------
Confidence 233445788898888876 4678888889999999999432211
Q ss_pred cccccccccCCccccceEEEEEcCCCCEEEEEeCCCcEEEEECCCC
Q 004477 266 YFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHA 311 (751)
Q Consensus 266 ~~~~~~~~~~g~~~~~vt~v~fspdg~~Ll~~s~d~~I~lwdl~~~ 311 (751)
.| +++.+ .+-+++|-.+ .++++|+.+|.|.||++...
T Consensus 322 if-------rg~~~-sidcv~~In~-~HfvsGSdnG~IaLWs~~KK 358 (479)
T KOG0299|consen 322 IF-------RGGEG-SIDCVAFIND-EHFVSGSDNGSIALWSLLKK 358 (479)
T ss_pred ee-------eCCCC-CeeeEEEecc-cceeeccCCceEEEeeeccc
Confidence 11 23333 4888888755 56899999999999999883
No 94
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.90 E-value=1.2e-22 Score=197.86 Aligned_cols=244 Identities=21% Similarity=0.321 Sum_probs=196.4
Q ss_pred cccccccccchhhhccccccEEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEeC------CC----------------
Q 004477 24 PDVNHSLQMHSSLVRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSY------SS---------------- 81 (751)
Q Consensus 24 ~~~~~~l~~~~~~i~~~~~~~~L~gH~~~V~~l~~s~dg~~LaSgs~Dg~I~IWd~------~~---------------- 81 (751)
...++.-.+|. +++.+++.++.||.|.||+|+|++.+.+++++|.|++..||.. ..
T Consensus 166 ASADhTA~iWs--~Esg~CL~~Y~GH~GSVNsikfh~s~~L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~s 243 (481)
T KOG0300|consen 166 ASADHTARIWS--LESGACLATYTGHTGSVNSIKFHNSGLLLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHS 243 (481)
T ss_pred cccccceeEEe--eccccceeeecccccceeeEEeccccceEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhcc
Confidence 34566777776 6778899999999999999999999999999999999999962 10
Q ss_pred ------------------CeEEEEecccCCcceEEEEEecCCCCcEEEEEECCCcEEEEECCCCCCCCCCCCCCCCceee
Q 004477 82 ------------------RKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALY 143 (751)
Q Consensus 82 ------------------~~~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~Dg~V~vwd~~~~~~~~~~~~~~~~~~~~ 143 (751)
..++..+ ++|.+.|.+..|... |+.+++++.|.+..+||++++ +++..+
T Consensus 244 De~~~d~d~~~~sD~~tiRvPl~~l-tgH~~vV~a~dWL~g--g~Q~vTaSWDRTAnlwDVEtg----------e~v~~L 310 (481)
T KOG0300|consen 244 DEHNRDTDSSEKSDGHTIRVPLMRL-TGHRAVVSACDWLAG--GQQMVTASWDRTANLWDVETG----------EVVNIL 310 (481)
T ss_pred cccccccccccccCCceeeeeeeee-eccccceEehhhhcC--cceeeeeeccccceeeeeccC----------ceeccc
Confidence 0123344 799999999999988 899999999999999999986 778999
Q ss_pred cccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCCCCCCCCCCccceEEEecccCceecccCCCCCccceEEEEE
Q 004477 144 QCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDI 223 (751)
Q Consensus 144 ~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~i~~ 223 (751)
.+|....+.++.+| ..+++++.+.|.++|+||+|..- ..+..+.+|...|+++.|
T Consensus 311 tGHd~ELtHcstHp-tQrLVvTsSrDtTFRLWDFReaI------------------------~sV~VFQGHtdtVTS~vF 365 (481)
T KOG0300|consen 311 TGHDSELTHCSTHP-TQRLVVTSSRDTTFRLWDFREAI------------------------QSVAVFQGHTDTVTSVVF 365 (481)
T ss_pred cCcchhccccccCC-cceEEEEeccCceeEeccchhhc------------------------ceeeeecccccceeEEEE
Confidence 99999999999999 67899999999999999999542 124455678999999999
Q ss_pred eCCCCcEEEEEeCCCeEEEEeCCCCC-CccccCCCCCCCCccccccccccccCCccccceEEEEEcCCCCEEEEEeCCCc
Q 004477 224 SSTRPHLLLVGGSDAFARLYDRRMLP-PLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEH 302 (751)
Q Consensus 224 sp~~~~~l~sgs~D~~IriwD~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~vt~v~fspdg~~Ll~~s~d~~ 302 (751)
+.+ ..+++|+.|.+|++||+++.. ++..+ ....+++.++.+..+..|+.-..+.+
T Consensus 366 ~~d--d~vVSgSDDrTvKvWdLrNMRsplATI----------------------RtdS~~NRvavs~g~~iIAiPhDNRq 421 (481)
T KOG0300|consen 366 NTD--DRVVSGSDDRTVKVWDLRNMRSPLATI----------------------RTDSPANRVAVSKGHPIIAIPHDNRQ 421 (481)
T ss_pred ecC--CceeecCCCceEEEeeeccccCcceee----------------------ecCCccceeEeecCCceEEeccCCce
Confidence 984 689999999999999998654 33222 12336899999999999999999999
Q ss_pred EEEEECCCCCccee----eeecCCCceeEEeCC
Q 004477 303 VYLMDVNHAGGRAM----RYTVGDASKIMSFTP 331 (751)
Q Consensus 303 I~lwdl~~~~~~~~----~~~~~~~~~~~~~sp 331 (751)
|+|||++......+ ...+...+...+|.-
T Consensus 422 vRlfDlnG~RlaRlPrtsRqgHrRMV~c~AW~e 454 (481)
T KOG0300|consen 422 VRLFDLNGNRLARLPRTSRQGHRRMVTCCAWLE 454 (481)
T ss_pred EEEEecCCCccccCCcccccccceeeeeeeccc
Confidence 99999998542221 123334444555554
No 95
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.90 E-value=1.1e-22 Score=198.24 Aligned_cols=249 Identities=20% Similarity=0.270 Sum_probs=200.4
Q ss_pred ccccccEEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEecccCCcceEEEEEecCCCCcEEEEEECCC
Q 004477 38 RRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDA 117 (751)
Q Consensus 38 ~~~~~~~~L~gH~~~V~~l~~s~dg~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~Dg 117 (751)
-...++++|.||++.|+.++-...-..+.++|.|.+.+||.+++++++.++ .||.+.|+||+|++. +.++++++.|+
T Consensus 136 ~~~~lvre~~GHkDGiW~Vaa~~tqpi~gtASADhTA~iWs~Esg~CL~~Y-~GH~GSVNsikfh~s--~~L~lTaSGD~ 212 (481)
T KOG0300|consen 136 VKFRLVRELEGHKDGIWHVAADSTQPICGTASADHTARIWSLESGACLATY-TGHTGSVNSIKFHNS--GLLLLTASGDE 212 (481)
T ss_pred eeEeehhhhcccccceeeehhhcCCcceeecccccceeEEeeccccceeee-cccccceeeEEeccc--cceEEEccCCc
Confidence 456778899999999999999888889999999999999999999999999 999999999999998 89999999999
Q ss_pred cEEEEECC----CCCCCC---------C---------CC--------CCCCCceeecccCCceeEEEEecCCCCEEEEEe
Q 004477 118 EVRLFNLS----RFSGRG---------L---------DD--------NAITPSALYQCHTRRVKKLAVEVGNPHVVWSAS 167 (751)
Q Consensus 118 ~V~vwd~~----~~~~~~---------~---------~~--------~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s 167 (751)
+..||... .++... . .+ .-..|+..+.+|...|.+..|-. ++..+++++
T Consensus 213 taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~-gg~Q~vTaS 291 (481)
T KOG0300|consen 213 TAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLA-GGQQMVTAS 291 (481)
T ss_pred chHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhc-Ccceeeeee
Confidence 99999722 111000 0 00 00136677899999999999988 788999999
Q ss_pred CCCcEEEEecCCCCCCCCCCCCCCccceEEEecccCceecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCC
Q 004477 168 EDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRM 247 (751)
Q Consensus 168 ~Dg~I~iwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~ 247 (751)
.|.+..+||++++... ....+|...++.++-+|. .+++++.+.|.+.|+||.|.
T Consensus 292 WDRTAnlwDVEtge~v-------------------------~~LtGHd~ELtHcstHpt-QrLVvTsSrDtTFRLWDFRe 345 (481)
T KOG0300|consen 292 WDRTANLWDVETGEVV-------------------------NILTGHDSELTHCSTHPT-QRLVVTSSRDTTFRLWDFRE 345 (481)
T ss_pred ccccceeeeeccCcee-------------------------ccccCcchhccccccCCc-ceEEEEeccCceeEeccchh
Confidence 9999999999998743 223347788999999995 78999999999999999983
Q ss_pred CCCccccCCCCCCCCccccccccccccCCccccceEEEEEcCCCCEEEEEeCCCcEEEEECCCCCcceeeeecCCCceeE
Q 004477 248 LPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVGDASKIM 327 (751)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~vt~v~fspdg~~Ll~~s~d~~I~lwdl~~~~~~~~~~~~~~~~~~~ 327 (751)
. + ..+..| +||.. .|+++.|.-+.+ +++|+.|.+|++||+.+...+........+++.+
T Consensus 346 a--I----------~sV~VF-------QGHtd-tVTS~vF~~dd~-vVSgSDDrTvKvWdLrNMRsplATIRtdS~~NRv 404 (481)
T KOG0300|consen 346 A--I----------QSVAVF-------QGHTD-TVTSVVFNTDDR-VVSGSDDRTVKVWDLRNMRSPLATIRTDSPANRV 404 (481)
T ss_pred h--c----------ceeeee-------ccccc-ceeEEEEecCCc-eeecCCCceEEEeeeccccCcceeeecCCcccee
Confidence 2 1 123333 67777 599999998765 7899999999999999987676666666677766
Q ss_pred EeCCCCCCcc
Q 004477 328 SFTPTLNGLE 337 (751)
Q Consensus 328 ~~sp~~~~~~ 337 (751)
+.+.....++
T Consensus 405 avs~g~~iIA 414 (481)
T KOG0300|consen 405 AVSKGHPIIA 414 (481)
T ss_pred EeecCCceEE
Confidence 6665544443
No 96
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.89 E-value=3.6e-22 Score=204.54 Aligned_cols=219 Identities=19% Similarity=0.334 Sum_probs=174.1
Q ss_pred cCCCcEEEEEECCCC-CEEEEEeCCCcEEEEeCCCCeE----------EEEecccCCcceEEEEEecCCCCcEEEEEECC
Q 004477 48 GHQGCVNAISWNSKG-SLLISGSDDTHINVWSYSSRKL----------LHSIETGHSANVFCTKFVPETSDELVVSGAGD 116 (751)
Q Consensus 48 gH~~~V~~l~~s~dg-~~LaSgs~Dg~I~IWd~~~~~~----------~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~D 116 (751)
-|.+.|+.+...|+. .++|+++..+.|.|||+.+..- -..+ .||.+.-+++.|++.. .-.|++|+.|
T Consensus 122 ~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L-~gH~~eg~glsWn~~~-~g~Lls~~~d 199 (422)
T KOG0264|consen 122 NHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRL-KGHEKEGYGLSWNRQQ-EGTLLSGSDD 199 (422)
T ss_pred cCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEE-Eeeccccccccccccc-ceeEeeccCC
Confidence 499999999999965 5788889999999999864321 1245 7999988999999986 5689999999
Q ss_pred CcEEEEECCCCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCCCCCCCCCCccceE
Q 004477 117 AEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNI 196 (751)
Q Consensus 117 g~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~~~~~~~~~~~~ 196 (751)
++|++||+...... .....+...+.+|...|..++|++.+..+|++++.|+.+.|||+|++....
T Consensus 200 ~~i~lwdi~~~~~~---~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~------------ 264 (422)
T KOG0264|consen 200 HTICLWDINAESKE---DKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKP------------ 264 (422)
T ss_pred CcEEEEeccccccC---CccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCCCC------------
Confidence 99999999864321 122467888999999999999999999999999999999999999742110
Q ss_pred EEecccCceecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCccccCCCCCCCCccccccccccccCC
Q 004477 197 LLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHG 276 (751)
Q Consensus 197 l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 276 (751)
......|...|+|++|+|-+..+||+|+.|++|.+||+|++.. + .|.. .+
T Consensus 265 -----------~~~~~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~------------~------lh~~-e~ 314 (422)
T KOG0264|consen 265 -----------SHSVKAHSAEVNCVAFNPFNEFILATGSADKTVALWDLRNLNK------------P------LHTF-EG 314 (422)
T ss_pred -----------cccccccCCceeEEEeCCCCCceEEeccCCCcEEEeechhccc------------C------ceec-cC
Confidence 1122347889999999999999999999999999999998752 1 1111 34
Q ss_pred ccccceEEEEEcCCCC-EEEEEeCCCcEEEEECCCCCcc
Q 004477 277 RSSLHLTHVTFSPNGE-EVLLSYSGEHVYLMDVNHAGGR 314 (751)
Q Consensus 277 ~~~~~vt~v~fspdg~-~Ll~~s~d~~I~lwdl~~~~~~ 314 (751)
|.. .|..|.|||... .|++++.|+.+.|||+..-+..
T Consensus 315 H~d-ev~~V~WSPh~etvLASSg~D~rl~vWDls~ig~e 352 (422)
T KOG0264|consen 315 HED-EVFQVEWSPHNETVLASSGTDRRLNVWDLSRIGEE 352 (422)
T ss_pred CCc-ceEEEEeCCCCCceeEecccCCcEEEEeccccccc
Confidence 555 599999999765 5666777999999999875433
No 97
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.89 E-value=6.6e-22 Score=219.81 Aligned_cols=223 Identities=26% Similarity=0.347 Sum_probs=181.9
Q ss_pred ccccccchhhhccccccEE-eccCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEecccCCcceEEEEEecCC
Q 004477 27 NHSLQMHSSLVRRLSQERE-LEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPET 105 (751)
Q Consensus 27 ~~~l~~~~~~i~~~~~~~~-L~gH~~~V~~l~~s~dg~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~s 105 (751)
++.++.|+.. ....+.. |.||.+.|+++++..-+.+|++|+.|.+++|||+.+|.+.+.+ .+|...|.++...+.
T Consensus 227 ~~tl~~~~~~--~~~~i~~~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg~C~~~l-~gh~stv~~~~~~~~- 302 (537)
T KOG0274|consen 227 DSTLHLWDLN--NGYLILTRLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCSTGECTHSL-QGHTSSVRCLTIDPF- 302 (537)
T ss_pred CceeEEeecc--cceEEEeeccCCCCCceeEEEecCCCEEEEEecCCcEEeEecCCCcEEEEe-cCCCceEEEEEccCc-
Confidence 4455444432 2334455 9999999999999988889999999999999999999999999 799999999998765
Q ss_pred CCcEEEEEECCCcEEEEECCCCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCCCC
Q 004477 106 SDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPP 185 (751)
Q Consensus 106 ~~~~l~sgs~Dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~ 185 (751)
++++|+.|.+|+||++..+ ..+.++.+|.++|+++... ..++++|+.||+|++||+++++.
T Consensus 303 ---~~~sgs~D~tVkVW~v~n~----------~~l~l~~~h~~~V~~v~~~---~~~lvsgs~d~~v~VW~~~~~~c--- 363 (537)
T KOG0274|consen 303 ---LLVSGSRDNTVKVWDVTNG----------ACLNLLRGHTGPVNCVQLD---EPLLVSGSYDGTVKVWDPRTGKC--- 363 (537)
T ss_pred ---eEeeccCCceEEEEeccCc----------ceEEEeccccccEEEEEec---CCEEEEEecCceEEEEEhhhcee---
Confidence 7899999999999999965 5588888899999999986 57899999999999999997663
Q ss_pred CCCCCCccceEEEecccCceecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCC-CCccccCCCCCCCCcc
Q 004477 186 AGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRML-PPLTSCQKRMSPPPCV 264 (751)
Q Consensus 186 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~-~~~~~~~~~~~~~~~~ 264 (751)
+....+|...|+++.+.+. ..+++|+.|++|++||+++. + |+
T Consensus 364 ----------------------l~sl~gH~~~V~sl~~~~~--~~~~Sgs~D~~IkvWdl~~~~~-------------c~ 406 (537)
T KOG0274|consen 364 ----------------------LKSLSGHTGRVYSLIVDSE--NRLLSGSLDTTIKVWDLRTKRK-------------CI 406 (537)
T ss_pred ----------------------eeeecCCcceEEEEEecCc--ceEEeeeeccceEeecCCchhh-------------hh
Confidence 3334458899999988763 79999999999999999986 4 33
Q ss_pred ccccccccccCCccccceEEEEEcCCCCEEEEEeCCCcEEEEECCCCCcceeeee
Q 004477 265 NYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYT 319 (751)
Q Consensus 265 ~~~~~~~~~~~g~~~~~vt~v~fspdg~~Ll~~s~d~~I~lwdl~~~~~~~~~~~ 319 (751)
..+ .+|.. -++. +...+++|++++.|++|++||..+++.......
T Consensus 407 ~tl-------~~h~~-~v~~--l~~~~~~Lvs~~aD~~Ik~WD~~~~~~~~~~~~ 451 (537)
T KOG0274|consen 407 HTL-------QGHTS-LVSS--LLLRDNFLVSSSADGTIKLWDAEEGECLRTLEG 451 (537)
T ss_pred hhh-------cCCcc-cccc--cccccceeEeccccccEEEeecccCceeeeecc
Confidence 333 34444 2433 445678999999999999999999776666555
No 98
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.89 E-value=2.3e-22 Score=199.71 Aligned_cols=220 Identities=16% Similarity=0.272 Sum_probs=179.3
Q ss_pred cccccccccchhhhccccccEEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEecccCCcceEEEEEec
Q 004477 24 PDVNHSLQMHSSLVRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVP 103 (751)
Q Consensus 24 ~~~~~~l~~~~~~i~~~~~~~~L~gH~~~V~~l~~s~dg~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp 103 (751)
..++..+++|+.. .-.+..+++.|.|.|..|++.. ..++++++|++|+.|.+.- ..++++ . ....+..+.-+.
T Consensus 85 Gs~DG~VkiWnls--qR~~~~~f~AH~G~V~Gi~v~~--~~~~tvgdDKtvK~wk~~~-~p~~ti-l-g~s~~~gIdh~~ 157 (433)
T KOG0268|consen 85 GSCDGEVKIWNLS--QRECIRTFKAHEGLVRGICVTQ--TSFFTVGDDKTVKQWKIDG-PPLHTI-L-GKSVYLGIDHHR 157 (433)
T ss_pred cccCceEEEEehh--hhhhhheeecccCceeeEEecc--cceEEecCCcceeeeeccC-Ccceee-e-cccccccccccc
Confidence 4578888888743 4457899999999999999987 6789999999999999864 466666 2 345677787776
Q ss_pred CCCCcEEEEEECCCcEEEEECCCCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCC
Q 004477 104 ETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSC 183 (751)
Q Consensus 104 ~s~~~~l~sgs~Dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~ 183 (751)
. +..++|||. .|-|||.... .|+..+.--.+.|.++.|+|....+|++|+.|++|.+||+|+..++
T Consensus 158 ~--~~~FaTcGe--~i~IWD~~R~----------~Pv~smswG~Dti~svkfNpvETsILas~~sDrsIvLyD~R~~~Pl 223 (433)
T KOG0268|consen 158 K--NSVFATCGE--QIDIWDEQRD----------NPVSSMSWGADSISSVKFNPVETSILASCASDRSIVLYDLRQASPL 223 (433)
T ss_pred c--cccccccCc--eeeecccccC----------CccceeecCCCceeEEecCCCcchheeeeccCCceEEEecccCCcc
Confidence 6 688999875 5899999864 6788888888999999999988889999999999999999998865
Q ss_pred CCCCCCCCccceEEEecccCceecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCccccCCCCCCCCc
Q 004477 184 PPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPC 263 (751)
Q Consensus 184 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~~~~~~~~~~~~~ 263 (751)
. .++..+ .-+.|+|+| ....+++|+.|..++.||+|.+..-
T Consensus 224 ~----------KVi~~m----------------RTN~IswnP-eafnF~~a~ED~nlY~~DmR~l~~p------------ 264 (433)
T KOG0268|consen 224 K----------KVILTM----------------RTNTICWNP-EAFNFVAANEDHNLYTYDMRNLSRP------------ 264 (433)
T ss_pred c----------eeeeec----------------cccceecCc-cccceeeccccccceehhhhhhccc------------
Confidence 2 333333 335789999 7899999999999999999976521
Q ss_pred cccccccccccCCccccceEEEEEcCCCCEEEEEeCCCcEEEEECCCC
Q 004477 264 VNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHA 311 (751)
Q Consensus 264 ~~~~~~~~~~~~g~~~~~vt~v~fspdg~~Ll~~s~d~~I~lwdl~~~ 311 (751)
+..+ .+|.+ .|.+|.|||.|+.+++|+.|.+|+||..+.+
T Consensus 265 ~~v~-------~dhvs-AV~dVdfsptG~EfvsgsyDksIRIf~~~~~ 304 (433)
T KOG0268|consen 265 LNVH-------KDHVS-AVMDVDFSPTGQEFVSGSYDKSIRIFPVNHG 304 (433)
T ss_pred chhh-------cccce-eEEEeccCCCcchhccccccceEEEeecCCC
Confidence 1111 34555 6999999999999999999999999998874
No 99
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.89 E-value=6.8e-22 Score=221.77 Aligned_cols=237 Identities=21% Similarity=0.330 Sum_probs=180.2
Q ss_pred cccEEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCC------------------CeEEEEecccCCcceEEEEEe
Q 004477 41 SQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSS------------------RKLLHSIETGHSANVFCTKFV 102 (751)
Q Consensus 41 ~~~~~L~gH~~~V~~l~~s~dg~~LaSgs~Dg~I~IWd~~~------------------~~~~~~l~~~h~~~V~~v~fs 102 (751)
+.+.+...|.++|+|+.|+|||++||+||+|+.|.||.... .+.+..+ .+|.+.|..++|+
T Consensus 60 k~l~~m~~h~~sv~CVR~S~dG~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l-~~H~~DV~Dv~Ws 138 (942)
T KOG0973|consen 60 KHLCTMDDHDGSVNCVRFSPDGSYLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSIL-RGHDSDVLDVNWS 138 (942)
T ss_pred hhheeeccccCceeEEEECCCCCeEeeccCcceEEEeeecccCCcccccccccccccceeeEEEEE-ecCCCccceeccC
Confidence 34566788999999999999999999999999999998762 1345555 7999999999999
Q ss_pred cCCCCcEEEEEECCCcEEEEECCCCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCC
Q 004477 103 PETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSS 182 (751)
Q Consensus 103 p~s~~~~l~sgs~Dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~ 182 (751)
|+ +.+||+++.|++|.|||..++ +.+.++.+|...|+.+.|.| -+++|+|-+.|++|++|++..-..
T Consensus 139 p~--~~~lvS~s~DnsViiwn~~tF----------~~~~vl~~H~s~VKGvs~DP-~Gky~ASqsdDrtikvwrt~dw~i 205 (942)
T KOG0973|consen 139 PD--DSLLVSVSLDNSVIIWNAKTF----------ELLKVLRGHQSLVKGVSWDP-IGKYFASQSDDRTLKVWRTSDWGI 205 (942)
T ss_pred CC--ccEEEEecccceEEEEccccc----------eeeeeeecccccccceEECC-ccCeeeeecCCceEEEEEccccee
Confidence 98 899999999999999999986 66899999999999999999 679999999999999999765221
Q ss_pred CCCCCCC--CCccceEEEe-------------------------cccCceecccCCCCCccceEEEEEeCC------C--
Q 004477 183 CPPAGSS--HQECRNILLD-------------------------LRCGAKRSLADPPKQTLSLKSCDISST------R-- 227 (751)
Q Consensus 183 ~~~~~~~--~~~~~~~l~~-------------------------~~~~~~~~~~~~~~~~~~v~~i~~sp~------~-- 227 (751)
....... +......+.. +..+....-..+-+|..++.++.|+|. +
T Consensus 206 ~k~It~pf~~~~~~T~f~RlSWSPDG~~las~nA~n~~~~~~~IieR~tWk~~~~LvGH~~p~evvrFnP~lfe~~~~ng 285 (942)
T KOG0973|consen 206 EKSITKPFEESPLTTFFLRLSWSPDGHHLASPNAVNGGKSTIAIIERGTWKVDKDLVGHSAPVEVVRFNPKLFERNNKNG 285 (942)
T ss_pred eEeeccchhhCCCcceeeecccCCCcCeecchhhccCCcceeEEEecCCceeeeeeecCCCceEEEEeChHHhccccccC
Confidence 1000000 0000000000 011112222334568889999999983 1
Q ss_pred ----Cc----EEEEEeCCCeEEEEeCCCCCCccccCCCCCCCCccccccccccccCCccccceEEEEEcCCCCEEEEEeC
Q 004477 228 ----PH----LLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYS 299 (751)
Q Consensus 228 ----~~----~l~sgs~D~~IriwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~vt~v~fspdg~~Ll~~s~ 299 (751)
+. .+|+|+.|+.|-||.....+|+-.. .++ .+..|..++|+|||..|++++.
T Consensus 286 ~~~~~~~~y~i~AvgSqDrSlSVW~T~~~RPl~vi---------------~~l-----f~~SI~DmsWspdG~~LfacS~ 345 (942)
T KOG0973|consen 286 TSTQPNCYYCIAAVGSQDRSLSVWNTALPRPLFVI---------------HNL-----FNKSIVDMSWSPDGFSLFACSL 345 (942)
T ss_pred CccCCCcceEEEEEecCCccEEEEecCCCCchhhh---------------hhh-----hcCceeeeeEcCCCCeEEEEec
Confidence 21 7899999999999998766554321 111 1225999999999999999999
Q ss_pred CCcEEEEECCCC
Q 004477 300 GEHVYLMDVNHA 311 (751)
Q Consensus 300 d~~I~lwdl~~~ 311 (751)
||+|.++.++..
T Consensus 346 DGtV~~i~Fee~ 357 (942)
T KOG0973|consen 346 DGTVALIHFEEK 357 (942)
T ss_pred CCeEEEEEcchH
Confidence 999999999874
No 100
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.89 E-value=9.7e-22 Score=188.02 Aligned_cols=237 Identities=18% Similarity=0.244 Sum_probs=185.2
Q ss_pred cccccEEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEecccCCcceEEEEEecCCCCcEEEEEEC---
Q 004477 39 RLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAG--- 115 (751)
Q Consensus 39 ~~~~~~~L~gH~~~V~~l~~s~dg~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~--- 115 (751)
....+-++.||++.|+|+..+.+.++|+||+.|.+++|||+++|+++.++. -..+|..+.|+++ |++++.+..
T Consensus 41 nGerlGty~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~tGk~la~~k--~~~~Vk~~~F~~~--gn~~l~~tD~~m 116 (327)
T KOG0643|consen 41 NGERLGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVETGKQLATWK--TNSPVKRVDFSFG--GNLILASTDKQM 116 (327)
T ss_pred CCceeeeecCCCceEEEEEecCCcceeeeccccceeEEEEcCCCcEEEEee--cCCeeEEEeeccC--CcEEEEEehhhc
Confidence 456678999999999999999999999999999999999999999999984 4678999999999 777766543
Q ss_pred --CCcEEEEECCCCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCCCCCCCCCCcc
Q 004477 116 --DAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQEC 193 (751)
Q Consensus 116 --Dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~~~~~~~~~ 193 (751)
-+.|.++|++..... ..+.+|...+..+...++.+-|.| -+.+|++|.+||.|.+||++++....
T Consensus 117 g~~~~v~~fdi~~~~~~---~~s~ep~~kI~t~~skit~a~Wg~-l~~~ii~Ghe~G~is~~da~~g~~~v--------- 183 (327)
T KOG0643|consen 117 GYTCFVSVFDIRDDSSD---IDSEEPYLKIPTPDSKITSALWGP-LGETIIAGHEDGSISIYDARTGKELV--------- 183 (327)
T ss_pred CcceEEEEEEccCChhh---hcccCceEEecCCccceeeeeecc-cCCEEEEecCCCcEEEEEcccCceee---------
Confidence 467999999854321 112367888889999999999999 67899999999999999999986431
Q ss_pred ceEEEecccCceecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCccccCCCCCCCCccc--------
Q 004477 194 RNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVN-------- 265 (751)
Q Consensus 194 ~~~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~~~~~~~~~~~~~~~-------- 265 (751)
.....|...|+.+.++|+ ..++++++.|.+-++||.+++..+.++....+ ..+..
T Consensus 184 ---------------~s~~~h~~~Ind~q~s~d-~T~FiT~s~Dttakl~D~~tl~v~Kty~te~P-vN~aaisP~~d~V 246 (327)
T KOG0643|consen 184 ---------------DSDEEHSSKINDLQFSRD-RTYFITGSKDTTAKLVDVRTLEVLKTYTTERP-VNTAAISPLLDHV 246 (327)
T ss_pred ---------------echhhhccccccccccCC-cceEEecccCccceeeeccceeeEEEeeeccc-ccceecccccceE
Confidence 112236678999999995 78999999999999999999886655433211 11100
Q ss_pred -----------------------ccccccc-----ccCCccccceEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 004477 266 -----------------------YFCPMHL-----SEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNH 310 (751)
Q Consensus 266 -----------------------~~~~~~~-----~~~g~~~~~vt~v~fspdg~~Ll~~s~d~~I~lwdl~~ 310 (751)
.|.-..+ .-.||-+ +|++|+|+|+|+-..+|+.||.|+|.-+..
T Consensus 247 ilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkGHFG-PINsvAfhPdGksYsSGGEDG~VR~h~Fd~ 318 (327)
T KOG0643|consen 247 ILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGHFG-PINSVAFHPDGKSYSSGGEDGYVRLHHFDS 318 (327)
T ss_pred EecCCceeeeeeeecccccchhhhHHHHHHHHHhcccccccc-CcceeEECCCCcccccCCCCceEEEEEecc
Confidence 0000000 0135555 799999999999999999999999986655
No 101
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.89 E-value=8.9e-22 Score=210.82 Aligned_cols=256 Identities=14% Similarity=0.185 Sum_probs=207.7
Q ss_pred ccccccchhhhccccccEEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEecccCCcceEEEEEecCCC
Q 004477 27 NHSLQMHSSLVRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETS 106 (751)
Q Consensus 27 ~~~l~~~~~~i~~~~~~~~L~gH~~~V~~l~~s~dg~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~s~ 106 (751)
...+.+|.........+..+. .+.|+++.|+++|++||.|..+|.|.|||..+.+.+..+..+|...|-+++|..
T Consensus 196 g~~vylW~~~s~~v~~l~~~~--~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~~~~~~~~h~~rvg~laW~~--- 270 (484)
T KOG0305|consen 196 GQSVYLWSASSGSVTELCSFG--EELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKKTRTLRGSHASRVGSLAWNS--- 270 (484)
T ss_pred cceEEEEecCCCceEEeEecC--CCceEEEEECCCCCEEEEeecCCeEEEEehhhccccccccCCcCceeEEEeccC---
Confidence 356667766666654444443 899999999999999999999999999999999999998333999999999993
Q ss_pred CcEEEEEECCCcEEEEECCCCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCCCCC
Q 004477 107 DELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPA 186 (751)
Q Consensus 107 ~~~l~sgs~Dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~~ 186 (751)
..+.+|+.|+.|.++|++..+. ...++.+|...|..+.|++ ++.+|++|+.|+.+.|||.....+.
T Consensus 271 -~~lssGsr~~~I~~~dvR~~~~---------~~~~~~~H~qeVCgLkws~-d~~~lASGgnDN~~~Iwd~~~~~p~--- 336 (484)
T KOG0305|consen 271 -SVLSSGSRDGKILNHDVRISQH---------VVSTLQGHRQEVCGLKWSP-DGNQLASGGNDNVVFIWDGLSPEPK--- 336 (484)
T ss_pred -ceEEEecCCCcEEEEEEecchh---------hhhhhhcccceeeeeEECC-CCCeeccCCCccceEeccCCCcccc---
Confidence 5899999999999999997532 2335889999999999999 7799999999999999999554422
Q ss_pred CCCCCccceEEEecccCceecccCCCCCccceEEEEEeCCCCcEEEEEe--CCCeEEEEeCCCCCCccccCCCCCCCCcc
Q 004477 187 GSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGG--SDAFARLYDRRMLPPLTSCQKRMSPPPCV 264 (751)
Q Consensus 187 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs--~D~~IriwD~~~~~~~~~~~~~~~~~~~~ 264 (751)
.....|...|+.++|+|-...+||+|+ .|+.|++||..++..+..+.
T Consensus 337 ----------------------~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i~~vd--------- 385 (484)
T KOG0305|consen 337 ----------------------FTFTEHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTGARIDSVD--------- 385 (484)
T ss_pred ----------------------EEEeccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCCcEecccc---------
Confidence 122338899999999998889999975 69999999999877554321
Q ss_pred ccccccccccCCccccceEEEEEcCCCCEEEEEeC--CCcEEEEECCCCCcceeeeecCCCceeEEeCCCCCCcccCCCc
Q 004477 265 NYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYS--GEHVYLMDVNHAGGRAMRYTVGDASKIMSFTPTLNGLELQPPI 342 (751)
Q Consensus 265 ~~~~~~~~~~~g~~~~~vt~v~fspdg~~Ll~~s~--d~~I~lwdl~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~~~ 342 (751)
.+..|++|.|++..++|+++.+ ++.|.||+..+.+.......|...+-.++++|+...+..+..+
T Consensus 386 -------------tgsQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~~~~~~l~gH~~RVl~la~SPdg~~i~t~a~D 452 (484)
T KOG0305|consen 386 -------------TGSQVCSLIWSKKYKELLSTHGYSENQITLWKYPSMKLVAELLGHTSRVLYLALSPDGETIVTGAAD 452 (484)
T ss_pred -------------cCCceeeEEEcCCCCEEEEecCCCCCcEEEEeccccceeeeecCCcceeEEEEECCCCCEEEEeccc
Confidence 2235999999999999887654 7899999999977777777777778889999997777666555
Q ss_pred ccc
Q 004477 343 HDF 345 (751)
Q Consensus 343 ~~~ 345 (751)
...
T Consensus 453 ETl 455 (484)
T KOG0305|consen 453 ETL 455 (484)
T ss_pred CcE
Confidence 443
No 102
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.88 E-value=2.4e-21 Score=189.47 Aligned_cols=237 Identities=19% Similarity=0.288 Sum_probs=178.4
Q ss_pred hccccccEEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEecccCCcceEEEEEecCCCCcEEEEEECC
Q 004477 37 VRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGD 116 (751)
Q Consensus 37 i~~~~~~~~L~gH~~~V~~l~~s~dg~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~D 116 (751)
.-++.+...+..|.+.|++|+.+ |.++||||.|-+|+|||+.+...+..+ ..|.+.|+++.|.+...-..|++|+.|
T Consensus 30 ~~~l~~lF~~~aH~~sitavAVs--~~~~aSGssDetI~IYDm~k~~qlg~l-l~HagsitaL~F~~~~S~shLlS~sdD 106 (362)
T KOG0294|consen 30 KPTLKPLFAFSAHAGSITALAVS--GPYVASGSSDETIHIYDMRKRKQLGIL-LSHAGSITALKFYPPLSKSHLLSGSDD 106 (362)
T ss_pred ceeeeccccccccccceeEEEec--ceeEeccCCCCcEEEEeccchhhhcce-eccccceEEEEecCCcchhheeeecCC
Confidence 34556678889999999999985 899999999999999999999988888 789999999999998534589999999
Q ss_pred CcEEEEECCCCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCCCCCCCCCCccceE
Q 004477 117 AEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNI 196 (751)
Q Consensus 117 g~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~~~~~~~~~~~~ 196 (751)
|.|.+|+...- +++..+++|.+.|+.++.+| .+++-++.+.|+.++.||+-.++........ .....+
T Consensus 107 G~i~iw~~~~W----------~~~~slK~H~~~Vt~lsiHP-S~KLALsVg~D~~lr~WNLV~Gr~a~v~~L~-~~at~v 174 (362)
T KOG0294|consen 107 GHIIIWRVGSW----------ELLKSLKAHKGQVTDLSIHP-SGKLALSVGGDQVLRTWNLVRGRVAFVLNLK-NKATLV 174 (362)
T ss_pred CcEEEEEcCCe----------EEeeeecccccccceeEecC-CCceEEEEcCCceeeeehhhcCccceeeccC-Ccceee
Confidence 99999999863 67899999999999999999 6789999999999999999888643111110 111123
Q ss_pred EEecccCcee---------------cccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCccccCCCCCCC
Q 004477 197 LLDLRCGAKR---------------SLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPP 261 (751)
Q Consensus 197 l~~~~~~~~~---------------~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~~~~~~~~~~~ 261 (751)
.|........ .+...-.....+.|+.|- ++..+++|+.|..|++||.....+...+
T Consensus 175 ~w~~~Gd~F~v~~~~~i~i~q~d~A~v~~~i~~~~r~l~~~~l--~~~~L~vG~d~~~i~~~D~ds~~~~~~~------- 245 (362)
T KOG0294|consen 175 SWSPQGDHFVVSGRNKIDIYQLDNASVFREIENPKRILCATFL--DGSELLVGGDNEWISLKDTDSDTPLTEF------- 245 (362)
T ss_pred EEcCCCCEEEEEeccEEEEEecccHhHhhhhhccccceeeeec--CCceEEEecCCceEEEeccCCCccceee-------
Confidence 3321111000 000000111234444444 5689999999999999999876544332
Q ss_pred CccccccccccccCCccccceEEEEE--cCCCCEEEEEeCCCcEEEEECCCC
Q 004477 262 PCVNYFCPMHLSEHGRSSLHLTHVTF--SPNGEEVLLSYSGEHVYLMDVNHA 311 (751)
Q Consensus 262 ~~~~~~~~~~~~~~g~~~~~vt~v~f--spdg~~Ll~~s~d~~I~lwdl~~~ 311 (751)
.+|.. .|..+.+ .|++.+|+++++||.|++||++..
T Consensus 246 -------------~AH~~-RVK~i~~~~~~~~~~lvTaSSDG~I~vWd~~~~ 283 (362)
T KOG0294|consen 246 -------------LAHEN-RVKDIASYTNPEHEYLVTASSDGFIKVWDIDME 283 (362)
T ss_pred -------------ecchh-heeeeEEEecCCceEEEEeccCceEEEEEcccc
Confidence 34544 5777763 567899999999999999999885
No 103
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.88 E-value=1.6e-21 Score=199.45 Aligned_cols=242 Identities=14% Similarity=0.204 Sum_probs=190.4
Q ss_pred ccCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEecccCCcceEEEEEecCCCCcEEEEEECCCcEEEEECCC
Q 004477 47 EGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSR 126 (751)
Q Consensus 47 ~gH~~~V~~l~~s~dg~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~Dg~V~vwd~~~ 126 (751)
++|...|.+++.++||++||+|+.|..|.||+..+...++.+ ++|.+.|.+++|-..+ ..+++++.|++|++|++..
T Consensus 199 ~~h~keil~~avS~Dgkylatgg~d~~v~Iw~~~t~ehv~~~-~ghr~~V~~L~fr~gt--~~lys~s~Drsvkvw~~~~ 275 (479)
T KOG0299|consen 199 KGHVKEILTLAVSSDGKYLATGGRDRHVQIWDCDTLEHVKVF-KGHRGAVSSLAFRKGT--SELYSASADRSVKVWSIDQ 275 (479)
T ss_pred ccccceeEEEEEcCCCcEEEecCCCceEEEecCcccchhhcc-cccccceeeeeeecCc--cceeeeecCCceEEEehhH
Confidence 489999999999999999999999999999999999999998 8999999999999884 7899999999999999986
Q ss_pred CCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCCCCCCCCCCccceEEEecccCcee
Q 004477 127 FSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKR 206 (751)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 206 (751)
. ..+.++.+|.+.|..|.-.. -.+.+-.|+.|+++++|++...... ++
T Consensus 276 ~----------s~vetlyGHqd~v~~IdaL~-reR~vtVGgrDrT~rlwKi~eesql-------------if-------- 323 (479)
T KOG0299|consen 276 L----------SYVETLYGHQDGVLGIDALS-RERCVTVGGRDRTVRLWKIPEESQL-------------IF-------- 323 (479)
T ss_pred h----------HHHHHHhCCccceeeechhc-ccceEEeccccceeEEEecccccee-------------ee--------
Confidence 4 45788999999999997765 4566666779999999999443311 11
Q ss_pred cccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCccccCCCCCCCCccccccccccccCCccccceEEEE
Q 004477 207 SLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVT 286 (751)
Q Consensus 207 ~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~vt~v~ 286 (751)
.++...+-|++|-. ...+++|+.+|.|.+|++.+.+++........... .+ ....+ ..+|++++
T Consensus 324 -----rg~~~sidcv~~In--~~HfvsGSdnG~IaLWs~~KKkplf~~~~AHgv~~-------~~-~~~~~-~~Witsla 387 (479)
T KOG0299|consen 324 -----RGGEGSIDCVAFIN--DEHFVSGSDNGSIALWSLLKKKPLFTSRLAHGVIP-------EL-DPVNG-NFWITSLA 387 (479)
T ss_pred -----eCCCCCeeeEEEec--ccceeeccCCceEEEeeecccCceeEeeccccccC-------Cc-ccccc-ccceeeeE
Confidence 12456788999875 46899999999999999998887765433221110 00 00111 14899999
Q ss_pred EcCCCCEEEEEeCCCcEEEEECCCCC---cceeeeecCCCceeEEeCCCCCCcccC
Q 004477 287 FSPNGEEVLLSYSGEHVYLMDVNHAG---GRAMRYTVGDASKIMSFTPTLNGLELQ 339 (751)
Q Consensus 287 fspdg~~Ll~~s~d~~I~lwdl~~~~---~~~~~~~~~~~~~~~~~sp~~~~~~~~ 339 (751)
..|....+++|+.+|.|+||-+..+- .+...+.....++.++|+++...+...
T Consensus 388 ~i~~sdL~asGS~~G~vrLW~i~~g~r~i~~l~~ls~~GfVNsl~f~~sgk~ivag 443 (479)
T KOG0299|consen 388 VIPGSDLLASGSWSGCVRLWKIEDGLRAINLLYSLSLVGFVNSLAFSNSGKRIVAG 443 (479)
T ss_pred ecccCceEEecCCCCceEEEEecCCccccceeeecccccEEEEEEEccCCCEEEEe
Confidence 99999999999999999999999862 222223346677888888887755444
No 104
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.88 E-value=1.5e-21 Score=188.77 Aligned_cols=222 Identities=15% Similarity=0.267 Sum_probs=167.6
Q ss_pred eccCCCcEEEEEECC-CCCEEEEEeCCCcEEEEeCCCCe------------EE--EEecccCCcceEEEEEecCCCCcEE
Q 004477 46 LEGHQGCVNAISWNS-KGSLLISGSDDTHINVWSYSSRK------------LL--HSIETGHSANVFCTKFVPETSDELV 110 (751)
Q Consensus 46 L~gH~~~V~~l~~s~-dg~~LaSgs~Dg~I~IWd~~~~~------------~~--~~l~~~h~~~V~~v~fsp~s~~~~l 110 (751)
-+.|.|.||+|...+ .|++++||+.||.|.|||+++-. ++ ..-..+|+..|.++-|-|.. .-++
T Consensus 39 ~r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~D-tGmF 117 (397)
T KOG4283|consen 39 VRPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPID-TGMF 117 (397)
T ss_pred eccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeec-Ccee
Confidence 356999999999988 69999999999999999987432 11 11125799999999999984 4588
Q ss_pred EEEECCCcEEEEECCCCCCCCCCCCCCCCceeecccCCceeEEEEecCCC--CEEEEEeCCCcEEEEecCCCCCCCCCCC
Q 004477 111 VSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNP--HVVWSASEDGTLRQHDFRQGSSCPPAGS 188 (751)
Q Consensus 111 ~sgs~Dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~--~~l~s~s~Dg~I~iwDlr~~~~~~~~~~ 188 (751)
.+++.|.+++|||..+.+ ....|+ -.+.|++-+|+|-.. .++++|..|-.|++-|+..+...
T Consensus 118 tssSFDhtlKVWDtnTlQ----------~a~~F~-me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~s----- 181 (397)
T KOG4283|consen 118 TSSSFDHTLKVWDTNTLQ----------EAVDFK-MEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFS----- 181 (397)
T ss_pred ecccccceEEEeecccce----------eeEEee-cCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcce-----
Confidence 899999999999999752 233443 467888889988332 37788888999999999988632
Q ss_pred CCCccceEEEecccCceecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCC-CccccCCCC-CCCCcccc
Q 004477 189 SHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLP-PLTSCQKRM-SPPPCVNY 266 (751)
Q Consensus 189 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~-~~~~~~~~~-~~~~~~~~ 266 (751)
....+|...|.++.|+|.....|++|+.||.||+||+|... ....+.... ..++.++
T Consensus 182 --------------------H~LsGHr~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~- 240 (397)
T KOG4283|consen 182 --------------------HTLSGHRDGVLAVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILK- 240 (397)
T ss_pred --------------------eeeccccCceEEEEeccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCcccc-
Confidence 12345888999999999877789999999999999999753 222221111 1111111
Q ss_pred ccccccccCCccccceEEEEEcCCCCEEEEEeCCCcEEEEECCCCC
Q 004477 267 FCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAG 312 (751)
Q Consensus 267 ~~~~~~~~~g~~~~~vt~v~fspdg~~Ll~~s~d~~I~lwdl~~~~ 312 (751)
....|.+ .|.+++|+.+|.++++.+.|..+++|+..++.
T Consensus 241 ------~n~ah~g-kvngla~tSd~~~l~~~gtd~r~r~wn~~~G~ 279 (397)
T KOG4283|consen 241 ------TNTAHYG-KVNGLAWTSDARYLASCGTDDRIRVWNMESGR 279 (397)
T ss_pred ------ccccccc-eeeeeeecccchhhhhccCccceEEeecccCc
Confidence 1122333 59999999999999999999999999999864
No 105
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.88 E-value=3.3e-21 Score=195.53 Aligned_cols=213 Identities=19% Similarity=0.243 Sum_probs=177.6
Q ss_pred ccccccEEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEecccCCcceEEEEEecCCCCcEEEEEECCC
Q 004477 38 RRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDA 117 (751)
Q Consensus 38 ~~~~~~~~L~gH~~~V~~l~~s~dg~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~Dg 117 (751)
...+.+.+|+||+..|+.+.|+++...+++++.|..|+||..........+ ..|..+|+.+..+|. |.||++++.|+
T Consensus 249 ~s~q~l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s~~~~~-~~h~~~V~~ls~h~t--geYllsAs~d~ 325 (506)
T KOG0289|consen 249 PSNQILATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLSSEPTSS-RPHEEPVTGLSLHPT--GEYLLSASNDG 325 (506)
T ss_pred chhhhhhhccCcceEEEEEEeccchhheeecCCcceEEeeccccccCcccc-ccccccceeeeeccC--CcEEEEecCCc
Confidence 445677899999999999999999999999999999999998776655555 789999999999999 89999999999
Q ss_pred cEEEEECCCCCCCCCCCCCCCCceeec--ccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCCCCCCCCCCccce
Q 004477 118 EVRLFNLSRFSGRGLDDNAITPSALYQ--CHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRN 195 (751)
Q Consensus 118 ~V~vwd~~~~~~~~~~~~~~~~~~~~~--~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~~~~~~~~~~~ 195 (751)
+....|++++. .+.... ...-.+++++|+| ++.+|.+|..||.|++||+..+..
T Consensus 326 ~w~Fsd~~~g~----------~lt~vs~~~s~v~~ts~~fHp-DgLifgtgt~d~~vkiwdlks~~~------------- 381 (506)
T KOG0289|consen 326 TWAFSDISSGS----------QLTVVSDETSDVEYTSAAFHP-DGLIFGTGTPDGVVKIWDLKSQTN------------- 381 (506)
T ss_pred eEEEEEccCCc----------EEEEEeeccccceeEEeeEcC-CceEEeccCCCceEEEEEcCCccc-------------
Confidence 99999999642 122222 1223489999999 779999999999999999988752
Q ss_pred EEEecccCceecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCccccCCCCCCCCccccccccccccC
Q 004477 196 ILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEH 275 (751)
Q Consensus 196 ~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (751)
+..+++|..+|+.++|+. +|++|++++.|+.|++||+|+.+...+++..
T Consensus 382 ------------~a~Fpght~~vk~i~FsE-NGY~Lat~add~~V~lwDLRKl~n~kt~~l~------------------ 430 (506)
T KOG0289|consen 382 ------------VAKFPGHTGPVKAISFSE-NGYWLATAADDGSVKLWDLRKLKNFKTIQLD------------------ 430 (506)
T ss_pred ------------cccCCCCCCceeEEEecc-CceEEEEEecCCeEEEEEehhhcccceeecc------------------
Confidence 455677999999999999 5899999999999999999998755444211
Q ss_pred CccccceEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 004477 276 GRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNH 310 (751)
Q Consensus 276 g~~~~~vt~v~fspdg~~Ll~~s~d~~I~lwdl~~ 310 (751)
....+.++.|.+.|.+|++++.+=+||+++-.+
T Consensus 431 --~~~~v~s~~fD~SGt~L~~~g~~l~Vy~~~k~~ 463 (506)
T KOG0289|consen 431 --EKKEVNSLSFDQSGTYLGIAGSDLQVYICKKKT 463 (506)
T ss_pred --ccccceeEEEcCCCCeEEeecceeEEEEEeccc
Confidence 112489999999999999998888888887444
No 106
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.88 E-value=1.9e-20 Score=174.57 Aligned_cols=233 Identities=22% Similarity=0.289 Sum_probs=174.8
Q ss_pred eccCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCeE-----EEEecccCCcceEEEEEecC--CCCcEEEEE-ECCC
Q 004477 46 LEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKL-----LHSIETGHSANVFCTKFVPE--TSDELVVSG-AGDA 117 (751)
Q Consensus 46 L~gH~~~V~~l~~s~dg~~LaSgs~Dg~I~IWd~~~~~~-----~~~l~~~h~~~V~~v~fsp~--s~~~~l~sg-s~Dg 117 (751)
-+-|++.|.|.+|+|+|++||+||.|++|++.-+....+ -..+ .-|.+.|..++|..+ +.+.+|+++ ..|.
T Consensus 85 ~khhkgsiyc~~ws~~geliatgsndk~ik~l~fn~dt~~~~g~dle~-nmhdgtirdl~fld~~~s~~~il~s~gagdc 163 (350)
T KOG0641|consen 85 NKHHKGSIYCTAWSPCGELIATGSNDKTIKVLPFNADTCNATGHDLEF-NMHDGTIRDLAFLDDPESGGAILASAGAGDC 163 (350)
T ss_pred ccccCccEEEEEecCccCeEEecCCCceEEEEecccccccccCcceee-eecCCceeeeEEecCCCcCceEEEecCCCcc
Confidence 356999999999999999999999999999976543222 1234 569999999999854 446778775 4577
Q ss_pred cEEEEECCCCCCCCCCCCCCCCceeecccCCceeEE-EEecCCCCEEEEEeCCCcEEEEecCCCCCCCCCCCCCCccceE
Q 004477 118 EVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKL-AVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNI 196 (751)
Q Consensus 118 ~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l-~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~~~~~~~~~~~~ 196 (751)
.|++-|...+ .+.+.+.+|++.|.++ .| ++.+|++|+.|.+||+||+|.+... ++
T Consensus 164 ~iy~tdc~~g----------~~~~a~sghtghilalysw---n~~m~~sgsqdktirfwdlrv~~~v-----------~~ 219 (350)
T KOG0641|consen 164 KIYITDCGRG----------QGFHALSGHTGHILALYSW---NGAMFASGSQDKTIRFWDLRVNSCV-----------NT 219 (350)
T ss_pred eEEEeecCCC----------CcceeecCCcccEEEEEEe---cCcEEEccCCCceEEEEeeecccee-----------ee
Confidence 8888887765 4588999999999887 44 5689999999999999999987543 22
Q ss_pred EEecccCceecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCccccCCCCCCCCccccccccccccCC
Q 004477 197 LLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHG 276 (751)
Q Consensus 197 l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 276 (751)
+-+...+ ..-....|.++++.|. +++|++|-.|....+||+|-+..+. .| ..
T Consensus 220 l~~~~~~-------~glessavaav~vdps-grll~sg~~dssc~lydirg~r~iq-------------~f-------~p 271 (350)
T KOG0641|consen 220 LDNDFHD-------GGLESSAVAAVAVDPS-GRLLASGHADSSCMLYDIRGGRMIQ-------------RF-------HP 271 (350)
T ss_pred ccCcccC-------CCcccceeEEEEECCC-cceeeeccCCCceEEEEeeCCceee-------------ee-------CC
Confidence 2111111 1113467999999995 8999999999999999999876543 33 22
Q ss_pred ccccceEEEEEcCCCCEEEEEeCCCcEEEEECCCCC--cce--eeeecCCCceeEEeCCC
Q 004477 277 RSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAG--GRA--MRYTVGDASKIMSFTPT 332 (751)
Q Consensus 277 ~~~~~vt~v~fspdg~~Ll~~s~d~~I~lwdl~~~~--~~~--~~~~~~~~~~~~~~sp~ 332 (751)
|.. .|.++.|||..-||++++.|..|++=|++..- +.. +.-.+.+..-...|+|.
T Consensus 272 hsa-dir~vrfsp~a~yllt~syd~~ikltdlqgdla~el~~~vv~ehkdk~i~~rwh~~ 330 (350)
T KOG0641|consen 272 HSA-DIRCVRFSPGAHYLLTCSYDMKIKLTDLQGDLAHELPIMVVAEHKDKAIQCRWHPQ 330 (350)
T ss_pred Ccc-ceeEEEeCCCceEEEEecccceEEEeecccchhhcCceEEEEeccCceEEEEecCc
Confidence 333 59999999999999999999999999998742 122 22234455555667774
No 107
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.88 E-value=7.9e-22 Score=209.01 Aligned_cols=252 Identities=18% Similarity=0.237 Sum_probs=198.9
Q ss_pred cCCCcEE---EEEECC-CCCEEEEEeCCCcEEEEeCCCCe------EEEEecccCCcceEEEEEecCCCCcEEEEEECCC
Q 004477 48 GHQGCVN---AISWNS-KGSLLISGSDDTHINVWSYSSRK------LLHSIETGHSANVFCTKFVPETSDELVVSGAGDA 117 (751)
Q Consensus 48 gH~~~V~---~l~~s~-dg~~LaSgs~Dg~I~IWd~~~~~------~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~Dg 117 (751)
.|...|+ .+..+. .+++|.|||.||.|++|++.... .+..+ ..|...|+.+...-+ ++.|+|+|.|.
T Consensus 19 qn~~~v~~~~~Lq~da~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asm-e~HsDWVNDiiL~~~--~~tlIS~SsDt 95 (735)
T KOG0308|consen 19 QNRNGVNITKALQLDAPNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASM-EHHSDWVNDIILCGN--GKTLISASSDT 95 (735)
T ss_pred hccccccchhhccccCCCCceEEecCCCceEEEeccccccCCcccchhhhh-hhhHhHHhhHHhhcC--CCceEEecCCc
Confidence 4566666 555654 66789999999999999975332 35566 789999999999988 78999999999
Q ss_pred cEEEEECCCCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCCCCCCCCCCccceEE
Q 004477 118 EVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNIL 197 (751)
Q Consensus 118 ~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~~~~~~~~~~~~l 197 (751)
+|++|+...... -+..++..|.+.|+|++.-..+..+++|||.|+.|.+||+.++.... ....
T Consensus 96 TVK~W~~~~~~~--------~c~stir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l---~~s~------ 158 (735)
T KOG0308|consen 96 TVKVWNAHKDNT--------FCMSTIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATL---VASF------ 158 (735)
T ss_pred eEEEeecccCcc--------hhHhhhhcccchheeeeecccCceeEEecCCCccEEEEEccCcchhh---hhhc------
Confidence 999999986432 35778899999999999933377899999999999999999874210 0000
Q ss_pred EecccCceecccCCC-CCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCccccCCCCCCCCccccccccccccCC
Q 004477 198 LDLRCGAKRSLADPP-KQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHG 276 (751)
Q Consensus 198 ~~~~~~~~~~~~~~~-~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 276 (751)
......... ++...|++++.++. +..|++|+..+.+|+||.++.+.+..+ +|
T Consensus 159 ------n~~t~~sl~sG~k~siYSLA~N~t-~t~ivsGgtek~lr~wDprt~~kimkL--------------------rG 211 (735)
T KOG0308|consen 159 ------NNVTVNSLGSGPKDSIYSLAMNQT-GTIIVSGGTEKDLRLWDPRTCKKIMKL--------------------RG 211 (735)
T ss_pred ------cccccccCCCCCccceeeeecCCc-ceEEEecCcccceEEeccccccceeee--------------------ec
Confidence 000011112 56789999999995 689999999999999999987765443 56
Q ss_pred ccccceEEEEEcCCCCEEEEEeCCCcEEEEECCCCCcceeeeecCCCceeEEeCCCCCCcccCCCcccccc
Q 004477 277 RSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVGDASKIMSFTPTLNGLELQPPIHDFLQ 347 (751)
Q Consensus 277 ~~~~~vt~v~fspdg~~Ll~~s~d~~I~lwdl~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~~~~~~~~ 347 (751)
|.. .|..+-.++||+.++++++||+|+|||+...........|.+.+..+..+|++..+.+...++....
T Consensus 212 HTd-NVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQrCl~T~~vH~e~VWaL~~~~sf~~vYsG~rd~~i~~ 281 (735)
T KOG0308|consen 212 HTD-NVRVLLVNDDGTRLLSASSDGTIRLWDLGQQRCLATYIVHKEGVWALQSSPSFTHVYSGGRDGNIYR 281 (735)
T ss_pred ccc-ceEEEEEcCCCCeEeecCCCceEEeeeccccceeeeEEeccCceEEEeeCCCcceEEecCCCCcEEe
Confidence 776 5999999999999999999999999999998777777788888888888998888777766655443
No 108
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.87 E-value=7.2e-22 Score=213.15 Aligned_cols=223 Identities=16% Similarity=0.275 Sum_probs=177.1
Q ss_pred cEEEEEECC-CCCEEEEEeCCCcEEEEeCCC---CeEEEEecccCCcceEEEEEecCCCCcEEEEEECCCcEEEEECCCC
Q 004477 52 CVNAISWNS-KGSLLISGSDDTHINVWSYSS---RKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRF 127 (751)
Q Consensus 52 ~V~~l~~s~-dg~~LaSgs~Dg~I~IWd~~~---~~~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~Dg~V~vwd~~~~ 127 (751)
.++.|+|+. +.++|||++..|.|.+||+.. .+++..| ..|+..|+++.|++.. ..+|+|||.||+|++||++..
T Consensus 89 S~~DVkW~~~~~NlIAT~s~nG~i~vWdlnk~~rnk~l~~f-~EH~Rs~~~ldfh~te-p~iliSGSQDg~vK~~DlR~~ 166 (839)
T KOG0269|consen 89 SAADVKWGQLYSNLIATCSTNGVISVWDLNKSIRNKLLTVF-NEHERSANKLDFHSTE-PNILISGSQDGTVKCWDLRSK 166 (839)
T ss_pred ehhhcccccchhhhheeecCCCcEEEEecCccccchhhhHh-hhhccceeeeeeccCC-ccEEEecCCCceEEEEeeecc
Confidence 355678875 578999999999999999986 4555566 8999999999999987 789999999999999999975
Q ss_pred CCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCCCCCCCCCCccceEEEecccCceec
Q 004477 128 SGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRS 207 (751)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 207 (751)
+...++.+....|+.+.|+|..++.|+++.+.|.+++||+|....+
T Consensus 167 ----------~S~~t~~~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~------------------------ 212 (839)
T KOG0269|consen 167 ----------KSKSTFRSNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRC------------------------ 212 (839)
T ss_pred ----------cccccccccchhhhceeeccCCCceEEEecCCceEEEeeccCchhH------------------------
Confidence 3467788889999999999988899999999999999999998754
Q ss_pred ccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCccccCCCCCCCCccccccccccccCCccccceEEEEE
Q 004477 208 LADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTF 287 (751)
Q Consensus 208 ~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~vt~v~f 287 (751)
......|.++|.|+.|+| +..+||+||.|++|+|||......... .++ +...+|..|+|
T Consensus 213 ~~k~~AH~GpV~c~nwhP-nr~~lATGGRDK~vkiWd~t~~~~~~~--------~tI------------nTiapv~rVkW 271 (839)
T KOG0269|consen 213 EKKLTAHNGPVLCLNWHP-NREWLATGGRDKMVKIWDMTDSRAKPK--------HTI------------NTIAPVGRVKW 271 (839)
T ss_pred HHHhhcccCceEEEeecC-CCceeeecCCCccEEEEeccCCCccce--------eEE------------eecceeeeeee
Confidence 222334888999999999 589999999999999999976432111 111 22346999999
Q ss_pred cCCCCEEEE-EeC--CCcEEEEECCCCCcceeee-ecCCCceeEEeCC
Q 004477 288 SPNGEEVLL-SYS--GEHVYLMDVNHAGGRAMRY-TVGDASKIMSFTP 331 (751)
Q Consensus 288 spdg~~Ll~-~s~--d~~I~lwdl~~~~~~~~~~-~~~~~~~~~~~sp 331 (751)
-|...+.++ ++. |-.|+|||+...=.+...+ .+......++|..
T Consensus 272 RP~~~~hLAtcsmv~dtsV~VWDvrRPYIP~~t~~eH~~~vt~i~W~~ 319 (839)
T KOG0269|consen 272 RPARSYHLATCSMVVDTSVHVWDVRRPYIPYATFLEHTDSVTGIAWDS 319 (839)
T ss_pred ccCccchhhhhhccccceEEEEeeccccccceeeeccCccccceeccC
Confidence 998876554 443 7899999999864444333 4556666666655
No 109
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.87 E-value=6e-21 Score=195.79 Aligned_cols=247 Identities=20% Similarity=0.303 Sum_probs=189.4
Q ss_pred CCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEecccCCcceEEEEEecCCCCcEEEEEECCCcEEEEECCCCC
Q 004477 49 HQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFS 128 (751)
Q Consensus 49 H~~~V~~l~~s~dg~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~Dg~V~vwd~~~~~ 128 (751)
-.|.|+||+-+|+|.+|+.|...|.|++|.+.+|.++..+ .+|-.+|+|+.|+-+ |.+|+|||.||.|.+|.+...-
T Consensus 80 ~Pg~v~al~s~n~G~~l~ag~i~g~lYlWelssG~LL~v~-~aHYQ~ITcL~fs~d--gs~iiTgskDg~V~vW~l~~lv 156 (476)
T KOG0646|consen 80 LPGPVHALASSNLGYFLLAGTISGNLYLWELSSGILLNVL-SAHYQSITCLKFSDD--GSHIITGSKDGAVLVWLLTDLV 156 (476)
T ss_pred cccceeeeecCCCceEEEeecccCcEEEEEeccccHHHHH-HhhccceeEEEEeCC--CcEEEecCCCccEEEEEEEeec
Confidence 4678999999999999999999999999999999999988 899999999999999 8999999999999999986421
Q ss_pred CCCCCCCCCCCceeecccCCceeEEEEecC-CCCEEEEEeCCCcEEEEecCCCCCCCCCCCCCCccceEEEecccCceec
Q 004477 129 GRGLDDNAITPSALYQCHTRRVKKLAVEVG-NPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRS 207 (751)
Q Consensus 129 ~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~-~~~~l~s~s~Dg~I~iwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 207 (751)
. .......+|++.+..|+-+|+++...+. -...++|+|.|.++++||+..+..+ ....
T Consensus 157 ~-a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LL--------------lti~------ 215 (476)
T KOG0646|consen 157 S-ADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLL--------------LTIT------ 215 (476)
T ss_pred c-cccCCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccceee--------------EEEe------
Confidence 1 1111234789999999999999998773 1247889999999999999987533 1111
Q ss_pred ccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCccc--cCCC-CCCCCccccccccccccCCccc-cceE
Q 004477 208 LADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTS--CQKR-MSPPPCVNYFCPMHLSEHGRSS-LHLT 283 (751)
Q Consensus 208 ~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~~~--~~~~-~~~~~~~~~~~~~~~~~~g~~~-~~vt 283 (751)
....++++++.|. .+.+.+|+.+|.|.+.++........ .+.. .......+. ..||.+ ..|+
T Consensus 216 ------fp~si~av~lDpa-e~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~-------~~Gh~~~~~IT 281 (476)
T KOG0646|consen 216 ------FPSSIKAVALDPA-ERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINV-------LVGHENESAIT 281 (476)
T ss_pred ------cCCcceeEEEccc-ccEEEecCCcceEEeeehhcCCcccccccccccccccceeee-------eccccCCccee
Confidence 2467899999995 78999999999999999876552111 0000 000000111 134544 4699
Q ss_pred EEEEcCCCCEEEEEeCCCcEEEEECCCCCcceeeeecCCCceeEEeCCCC
Q 004477 284 HVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVGDASKIMSFTPTL 333 (751)
Q Consensus 284 ~v~fspdg~~Ll~~s~d~~I~lwdl~~~~~~~~~~~~~~~~~~~~~sp~~ 333 (751)
+++++-||..|++|+.||.|.|||+.+............++..+.+.|--
T Consensus 282 cLais~DgtlLlSGd~dg~VcvWdi~S~Q~iRtl~~~kgpVtnL~i~~~~ 331 (476)
T KOG0646|consen 282 CLAISTDGTLLLSGDEDGKVCVWDIYSKQCIRTLQTSKGPVTNLQINPLE 331 (476)
T ss_pred EEEEecCccEEEeeCCCCCEEEEecchHHHHHHHhhhccccceeEeeccc
Confidence 99999999999999999999999999865544444355667777765543
No 110
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.87 E-value=4e-21 Score=191.88 Aligned_cols=249 Identities=19% Similarity=0.274 Sum_probs=184.2
Q ss_pred ccEEeccCCCcEEEEEECCCC--CEEEEEeCCCcEEEEeCCC----------------CeEEEEecccCCcceEEEEEec
Q 004477 42 QERELEGHQGCVNAISWNSKG--SLLISGSDDTHINVWSYSS----------------RKLLHSIETGHSANVFCTKFVP 103 (751)
Q Consensus 42 ~~~~L~gH~~~V~~l~~s~dg--~~LaSgs~Dg~I~IWd~~~----------------~~~~~~l~~~h~~~V~~v~fsp 103 (751)
.....-+|.++||.+.-++-| .+.|+=+..|.|.||++.. .+++.++ .+|.+.=+.++|||
T Consensus 143 ~~~~~i~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~-~ghk~EGy~LdWSp 221 (440)
T KOG0302|consen 143 IEMKSIPHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTF-NGHKGEGYGLDWSP 221 (440)
T ss_pred ccccccccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEe-cccCccceeeeccc
Confidence 334456899999999988855 5778888999999999752 2456677 79999999999999
Q ss_pred CCCCcEEEEEECCCcEEEEECCCCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCC
Q 004477 104 ETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSC 183 (751)
Q Consensus 104 ~s~~~~l~sgs~Dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~ 183 (751)
-. ...|+||.--+.|++|...++.-.. -...+.+|+..|-.|+|+|....+|+|||-||+|+|||+|.+...
T Consensus 222 ~~-~g~LlsGDc~~~I~lw~~~~g~W~v-------d~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~ 293 (440)
T KOG0302|consen 222 IK-TGRLLSGDCVKGIHLWEPSTGSWKV-------DQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKK 293 (440)
T ss_pred cc-ccccccCccccceEeeeeccCceee-------cCccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCcc
Confidence 64 3468888888899999998753221 134566799999999999998899999999999999999997422
Q ss_pred CCCCCCCCccceEEEecccCceecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCccccCCCCCCCCc
Q 004477 184 PPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPC 263 (751)
Q Consensus 184 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~~~~~~~~~~~~~ 263 (751)
. | ++ ...|...|+.|+||..- .+|++|+.||+++|||+|..+... .
T Consensus 294 ~--------~--~~-------------~kAh~sDVNVISWnr~~-~lLasG~DdGt~~iwDLR~~~~~~----------p 339 (440)
T KOG0302|consen 294 A--------A--VS-------------TKAHNSDVNVISWNRRE-PLLASGGDDGTLSIWDLRQFKSGQ----------P 339 (440)
T ss_pred c--------e--eE-------------eeccCCceeeEEccCCc-ceeeecCCCceEEEEEhhhccCCC----------c
Confidence 1 1 11 12367789999999964 499999999999999999765321 1
Q ss_pred cccccccccccCCccccceEEEEEcCCC-CEEEEEeCCCcEEEEECCCCCc----------------ceeeeec--CCCc
Q 004477 264 VNYFCPMHLSEHGRSSLHLTHVTFSPNG-EEVLLSYSGEHVYLMDVNHAGG----------------RAMRYTV--GDAS 324 (751)
Q Consensus 264 ~~~~~~~~~~~~g~~~~~vt~v~fspdg-~~Ll~~s~d~~I~lwdl~~~~~----------------~~~~~~~--~~~~ 324 (751)
+..| ..|.. +|++|.|+|.. ..|++++.|++|.|||+....- ++++|-| ..-+
T Consensus 340 VA~f-------k~Hk~-pItsieW~p~e~s~iaasg~D~QitiWDlsvE~D~ee~~~~a~~~L~dlPpQLLFVHqGQke~ 411 (440)
T KOG0302|consen 340 VATF-------KYHKA-PITSIEWHPHEDSVIAASGEDNQITIWDLSVEADEEEIDQEAAEGLQDLPPQLLFVHQGQKEV 411 (440)
T ss_pred ceeE-------EeccC-CeeEEEeccccCceEEeccCCCcEEEEEeeccCChhhhccccccchhcCCceeEEEecchhHh
Confidence 2222 12433 79999999954 5778888899999999875321 1133333 2345
Q ss_pred eeEEeCCCCCCcccCCC
Q 004477 325 KIMSFTPTLNGLELQPP 341 (751)
Q Consensus 325 ~~~~~sp~~~~~~~~~~ 341 (751)
+.+.|++..++..+...
T Consensus 412 KevhWH~QiPG~lvsTa 428 (440)
T KOG0302|consen 412 KEVHWHRQIPGLLVSTA 428 (440)
T ss_pred hhheeccCCCCeEEEec
Confidence 56777777776655543
No 111
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.86 E-value=5.7e-20 Score=175.52 Aligned_cols=257 Identities=14% Similarity=0.258 Sum_probs=204.9
Q ss_pred cccccccccchhhhccccccEEeccCCCcEEEEEECC-CCCEEEEEeCCCcEEEEeCCCCeEEEEecccCCcceEEEEEe
Q 004477 24 PDVNHSLQMHSSLVRRLSQERELEGHQGCVNAISWNS-KGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFV 102 (751)
Q Consensus 24 ~~~~~~l~~~~~~i~~~~~~~~L~gH~~~V~~l~~s~-dg~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~V~~v~fs 102 (751)
..+++.+.+|.....++.....++||.+.|-.++|+| +..+|++++.|++|++||...+++...+ ....++ .-+.|+
T Consensus 38 gs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd~r~~k~~~~i-~~~~en-i~i~ws 115 (313)
T KOG1407|consen 38 GSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWDIRSGKCTARI-ETKGEN-INITWS 115 (313)
T ss_pred cccCCceEEEEecchhhhhhhcccCCCcchhhheeCCCCCcceEEecCCceEEEEEeccCcEEEEe-eccCcc-eEEEEc
Confidence 4578889999888778888888999999999999998 5679999999999999999999999888 333444 457899
Q ss_pred cCCCCcEEEEEECCCcEEEEECCCCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCC
Q 004477 103 PETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSS 182 (751)
Q Consensus 103 p~s~~~~l~sgs~Dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~ 182 (751)
|+ |.+++.++.|..|...|.++. +..... .....+..++|+. ..++|+....-|+|.|...-.-++
T Consensus 116 p~--g~~~~~~~kdD~it~id~r~~----------~~~~~~-~~~~e~ne~~w~~-~nd~Fflt~GlG~v~ILsypsLkp 181 (313)
T KOG1407|consen 116 PD--GEYIAVGNKDDRITFIDARTY----------KIVNEE-QFKFEVNEISWNN-SNDLFFLTNGLGCVEILSYPSLKP 181 (313)
T ss_pred CC--CCEEEEecCcccEEEEEeccc----------ceeehh-cccceeeeeeecC-CCCEEEEecCCceEEEEecccccc
Confidence 99 899999999999999999863 222222 2345677889985 456666666669998887654332
Q ss_pred CCCCCCCCCccceEEEecccCceecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCccccCCCCCCCC
Q 004477 183 CPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPP 262 (751)
Q Consensus 183 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~~~~~~~~~~~~ 262 (751)
+.....|.....||.|+| +++++++|+.|..+.+||+..+-
T Consensus 182 -------------------------v~si~AH~snCicI~f~p-~GryfA~GsADAlvSLWD~~ELi------------- 222 (313)
T KOG1407|consen 182 -------------------------VQSIKAHPSNCICIEFDP-DGRYFATGSADALVSLWDVDELI------------- 222 (313)
T ss_pred -------------------------ccccccCCcceEEEEECC-CCceEeeccccceeeccChhHhh-------------
Confidence 233344778889999999 58999999999999999998764
Q ss_pred ccccccccccccCCccccceEEEEEcCCCCEEEEEeCCCcEEEEECCCCCcceeeeecCCCceeEEeCCCCCCcccCCCc
Q 004477 263 CVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVGDASKIMSFTPTLNGLELQPPI 342 (751)
Q Consensus 263 ~~~~~~~~~~~~~g~~~~~vt~v~fspdg~~Ll~~s~d~~I~lwdl~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~~~ 342 (751)
|++.+. ....+|..+.||.||++|++++.|..|-|=++.+|. ......+..+...++|+|...-++++...
T Consensus 223 C~R~is--------RldwpVRTlSFS~dg~~lASaSEDh~IDIA~vetGd-~~~eI~~~~~t~tVAWHPk~~LLAyA~dd 293 (313)
T KOG1407|consen 223 CERCIS--------RLDWPVRTLSFSHDGRMLASASEDHFIDIAEVETGD-RVWEIPCEGPTFTVAWHPKRPLLAYACDD 293 (313)
T ss_pred hheeec--------cccCceEEEEeccCcceeeccCccceEEeEecccCC-eEEEeeccCCceeEEecCCCceeeEEecC
Confidence 444442 224479999999999999999999999999999964 55566778889999999999999888765
Q ss_pred cc
Q 004477 343 HD 344 (751)
Q Consensus 343 ~~ 344 (751)
..
T Consensus 294 k~ 295 (313)
T KOG1407|consen 294 KD 295 (313)
T ss_pred CC
Confidence 43
No 112
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.86 E-value=4.2e-21 Score=203.52 Aligned_cols=252 Identities=19% Similarity=0.218 Sum_probs=198.3
Q ss_pred ccccccchhhhcccc----ccEEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCC--eEEEEecccCCcceEEEE
Q 004477 27 NHSLQMHSSLVRRLS----QERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSR--KLLHSIETGHSANVFCTK 100 (751)
Q Consensus 27 ~~~l~~~~~~i~~~~----~~~~L~gH~~~V~~l~~s~dg~~LaSgs~Dg~I~IWd~~~~--~~~~~l~~~h~~~V~~v~ 100 (751)
+..++.|+.-...-. .+..++.|.+-|+.+....+|+.|+|+|.|.+|++|+...+ .+..++ ..|+..|.|++
T Consensus 46 Dg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK~W~~~~~~~~c~sti-r~H~DYVkcla 124 (735)
T KOG0308|consen 46 DGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGKTLISASSDTTVKVWNAHKDNTFCMSTI-RTHKDYVKCLA 124 (735)
T ss_pred CceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCCceEEecCCceEEEeecccCcchhHhhh-hcccchheeee
Confidence 445666665444332 47788999999999999999999999999999999998866 566777 78999999999
Q ss_pred E-ecCCCCcEEEEEECCCcEEEEECCCCCCCCCCCCCCCCceeec-ccCCceeEEEEecCCCCEEEEEeCCCcEEEEecC
Q 004477 101 F-VPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQ-CHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFR 178 (751)
Q Consensus 101 f-sp~s~~~~l~sgs~Dg~V~vwd~~~~~~~~~~~~~~~~~~~~~-~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr 178 (751)
. -++ ..++||||-|+.|.|||+..+....+...+......+. ++...|++++.++ .+..|++|+..+.|++||.|
T Consensus 125 ~~ak~--~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~-t~t~ivsGgtek~lr~wDpr 201 (735)
T KOG0308|consen 125 YIAKN--NELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQ-TGTIIVSGGTEKDLRLWDPR 201 (735)
T ss_pred ecccC--ceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCC-cceEEEecCcccceEEeccc
Confidence 9 555 68999999999999999997644222222222333344 8999999999998 66899999999999999999
Q ss_pred CCCCCCCCCCCCCccceEEEecccCceecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCccccCCCC
Q 004477 179 QGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRM 258 (751)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~~~~~~~~ 258 (751)
+.+.. ....+|...|.++-+++ ++..+++++.||+||+||++-..
T Consensus 202 t~~ki-------------------------mkLrGHTdNVr~ll~~d-DGt~~ls~sSDgtIrlWdLgqQr--------- 246 (735)
T KOG0308|consen 202 TCKKI-------------------------MKLRGHTDNVRVLLVND-DGTRLLSASSDGTIRLWDLGQQR--------- 246 (735)
T ss_pred cccce-------------------------eeeeccccceEEEEEcC-CCCeEeecCCCceEEeeeccccc---------
Confidence 98643 22335889999999999 58999999999999999998654
Q ss_pred CCCCccccccccccccCCccccceEEEEEcCCCCEEEEEeCCCcEEEEECCCCCcceeeeecCCCceeEEe
Q 004477 259 SPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVGDASKIMSF 329 (751)
Q Consensus 259 ~~~~~~~~~~~~~~~~~g~~~~~vt~v~fspdg~~Ll~~s~d~~I~lwdl~~~~~~~~~~~~~~~~~~~~~ 329 (751)
|+..+ .-|.. .|+++..+|+-.++++|+.|+.|+.=|+.+.......+...+++..+..
T Consensus 247 ----Cl~T~-------~vH~e-~VWaL~~~~sf~~vYsG~rd~~i~~Tdl~n~~~~tlick~daPv~~l~~ 305 (735)
T KOG0308|consen 247 ----CLATY-------IVHKE-GVWALQSSPSFTHVYSGGRDGNIYRTDLRNPAKSTLICKEDAPVLKLHL 305 (735)
T ss_pred ----eeeeE-------EeccC-ceEEEeeCCCcceEEecCCCCcEEecccCCchhheEeecCCCchhhhhh
Confidence 44443 23444 3999999999999999999999999999996555555555444443333
No 113
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.86 E-value=1.1e-20 Score=195.22 Aligned_cols=271 Identities=14% Similarity=0.187 Sum_probs=192.3
Q ss_pred cccccccccchh--hhccccccEEecc-CCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEe-----------c
Q 004477 24 PDVNHSLQMHSS--LVRRLSQERELEG-HQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSI-----------E 89 (751)
Q Consensus 24 ~~~~~~l~~~~~--~i~~~~~~~~L~g-H~~~V~~l~~s~dg~~LaSgs~Dg~I~IWd~~~~~~~~~l-----------~ 89 (751)
..++..+++|+- .-.+++-.+.|.. ....|+.++|++.|..|+..+....++|+|-.....+... -
T Consensus 185 Gs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvsg~aqakl~DRdG~~~~e~~KGDQYI~Dm~nT 264 (641)
T KOG0772|consen 185 GSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILVVSGSAQAKLLDRDGFEIVEFSKGDQYIRDMYNT 264 (641)
T ss_pred ccccceEEEEecccccccchhhhccCcccccccceeeecCCCCeEEEEecCcceeEEccCCceeeeeeccchhhhhhhcc
Confidence 356777788764 2333333333332 2347999999999998888888889999996533322222 1
Q ss_pred ccCCcceEEEEEecCCCCcEEEEEECCCcEEEEECCCCCCCCCCCCCCCCceee-----cccCCceeEEEEecCCCCEEE
Q 004477 90 TGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALY-----QCHTRRVKKLAVEVGNPHVVW 164 (751)
Q Consensus 90 ~~h~~~V~~v~fsp~s~~~~l~sgs~Dg~V~vwd~~~~~~~~~~~~~~~~~~~~-----~~h~~~V~~l~~sp~~~~~l~ 164 (751)
+||...++|.+|+|.+ -..|+||+.||++||||+...... ++++ .+-.-.|+.++|++ ++.+|+
T Consensus 265 KGHia~lt~g~whP~~-k~~FlT~s~DgtlRiWdv~~~k~q---------~qVik~k~~~g~Rv~~tsC~~nr-dg~~iA 333 (641)
T KOG0772|consen 265 KGHIAELTCGCWHPDN-KEEFLTCSYDGTLRIWDVNNTKSQ---------LQVIKTKPAGGKRVPVTSCAWNR-DGKLIA 333 (641)
T ss_pred CCceeeeeccccccCc-ccceEEecCCCcEEEEecCCchhh---------eeEEeeccCCCcccCceeeecCC-Ccchhh
Confidence 5899999999999997 678999999999999999864321 2222 23456789999999 678899
Q ss_pred EEeCCCcEEEEecCCCCCCCCCCCCCCccceEEEecccCceecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEe
Q 004477 165 SASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYD 244 (751)
Q Consensus 165 s~s~Dg~I~iwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD 244 (751)
+|..||+|.+||.+....-+ .. .+.........|+||+|++ ++++|++-+.|.++++||
T Consensus 334 agc~DGSIQ~W~~~~~~v~p----------~~----------~vk~AH~~g~~Itsi~FS~-dg~~LlSRg~D~tLKvWD 392 (641)
T KOG0772|consen 334 AGCLDGSIQIWDKGSRTVRP----------VM----------KVKDAHLPGQDITSISFSY-DGNYLLSRGFDDTLKVWD 392 (641)
T ss_pred hcccCCceeeeecCCccccc----------ce----------EeeeccCCCCceeEEEecc-ccchhhhccCCCceeeee
Confidence 99999999999986543110 00 1111111234899999999 589999999999999999
Q ss_pred CCCCCCccccCCCCCCCCccccccccccccCCccccceEEEEEcCCCCEEEEEeC------CCcEEEEECCCCCcceeee
Q 004477 245 RRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYS------GEHVYLMDVNHAGGRAMRY 318 (751)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~vt~v~fspdg~~Ll~~s~------d~~I~lwdl~~~~~~~~~~ 318 (751)
+|..+. ++..+.. -...++-+.++|||+.+.|++|++ .+.+++||..+-.......
T Consensus 393 Lrq~kk------------pL~~~tg------L~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d~v~ki~ 454 (641)
T KOG0772|consen 393 LRQFKK------------PLNVRTG------LPTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLDTVYKID 454 (641)
T ss_pred cccccc------------chhhhcC------CCccCCCCccccCCCceEEEecccccCCCCCceEEEEeccceeeEEEec
Confidence 997652 1111110 011234688999999999999976 4689999988855444444
Q ss_pred ecCCCceeEEeCCCCCCcccCCCccc
Q 004477 319 TVGDASKIMSFTPTLNGLELQPPIHD 344 (751)
Q Consensus 319 ~~~~~~~~~~~sp~~~~~~~~~~~~~ 344 (751)
.....+..+.|+|.+|.+......+.
T Consensus 455 i~~aSvv~~~WhpkLNQi~~gsgdG~ 480 (641)
T KOG0772|consen 455 ISTASVVRCLWHPKLNQIFAGSGDGT 480 (641)
T ss_pred CCCceEEEEeecchhhheeeecCCCc
Confidence 44556667889999999987766544
No 114
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.86 E-value=7.4e-20 Score=178.96 Aligned_cols=191 Identities=15% Similarity=0.199 Sum_probs=131.4
Q ss_pred EEEEeCCCCeEEEE----ecccCCcceEEEEEecCCCCcEEEEEECCCcEEEEECCCCCCCCCCCCCCCCceeecccCCc
Q 004477 74 INVWSYSSRKLLHS----IETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRR 149 (751)
Q Consensus 74 I~IWd~~~~~~~~~----l~~~h~~~V~~v~fsp~s~~~~l~sgs~Dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~ 149 (751)
+.-|+.+.....+. .+++|.++|++++|+.+ |++|+|++.|++|+||+++....+.- ++++.-. --+.
T Consensus 63 ~~~~k~~q~~f~Hpl~~~~LKgH~~~vt~~~FsSd--GK~lat~~~Dr~Ir~w~~~DF~~~eH-----r~~R~nv-e~dh 134 (420)
T KOG2096|consen 63 NDQWKAKQPTFVHPLNVSVLKGHKKEVTDVAFSSD--GKKLATISGDRSIRLWDVRDFENKEH-----RCIRQNV-EYDH 134 (420)
T ss_pred hhhhcccCCCcccchhhhhhhccCCceeeeEEcCC--CceeEEEeCCceEEEEecchhhhhhh-----hHhhccc-cCCC
Confidence 34455544333222 23799999999999999 89999999999999999986432211 1121111 1235
Q ss_pred eeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCCCCCCCCCCccceEEEecccCceecccCCCCCccceEEEEEeCCCCc
Q 004477 150 VKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPH 229 (751)
Q Consensus 150 V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~ 229 (751)
.+.+.|+|+...+++++....++++|.+...+.- ......+-++ .+.+...|...+..+-+.. ++.
T Consensus 135 pT~V~FapDc~s~vv~~~~g~~l~vyk~~K~~dG------~~~~~~v~~D-------~~~f~~kh~v~~i~iGiA~-~~k 200 (420)
T KOG2096|consen 135 PTRVVFAPDCKSVVVSVKRGNKLCVYKLVKKTDG------SGSHHFVHID-------NLEFERKHQVDIINIGIAG-NAK 200 (420)
T ss_pred ceEEEECCCcceEEEEEccCCEEEEEEeeecccC------CCCccccccc-------ccccchhcccceEEEeecC-Cce
Confidence 6789999988888888888889999988765421 0000111111 1223445677777777776 578
Q ss_pred EEEEEeCCCeEEEEeCCCCCCccccCCCCCCCCccccccccccccCCccccceEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 004477 230 LLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDV 308 (751)
Q Consensus 230 ~l~sgs~D~~IriwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~vt~v~fspdg~~Ll~~s~d~~I~lwdl 308 (751)
+|++++.|..|.||+++ ++.+..+... ...-+..+.||+|++|++++----|++|.+
T Consensus 201 ~imsas~dt~i~lw~lk-Gq~L~~idtn---------------------q~~n~~aavSP~GRFia~~gFTpDVkVwE~ 257 (420)
T KOG2096|consen 201 YIMSASLDTKICLWDLK-GQLLQSIDTN---------------------QSSNYDAAVSPDGRFIAVSGFTPDVKVWEP 257 (420)
T ss_pred EEEEecCCCcEEEEecC-Cceeeeeccc---------------------cccccceeeCCCCcEEEEecCCCCceEEEE
Confidence 99999999999999998 5544433211 112467899999999999998888999974
No 115
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.86 E-value=1.3e-20 Score=201.93 Aligned_cols=223 Identities=22% Similarity=0.292 Sum_probs=183.7
Q ss_pred cccccccchhhhccccccEEecc-CCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEecccCCcceEEEEEecC
Q 004477 26 VNHSLQMHSSLVRRLSQERELEG-HQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPE 104 (751)
Q Consensus 26 ~~~~l~~~~~~i~~~~~~~~L~g-H~~~V~~l~~s~dg~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~ 104 (751)
.+..+++|+ +.+.+.+.++.+ |...|-+|+|+ +..|.+|+.|+.|.++|+...+.......+|...|..++|+++
T Consensus 237 ~~g~v~iwD--~~~~k~~~~~~~~h~~rvg~laW~--~~~lssGsr~~~I~~~dvR~~~~~~~~~~~H~qeVCgLkws~d 312 (484)
T KOG0305|consen 237 SDGTVQIWD--VKEQKKTRTLRGSHASRVGSLAWN--SSVLSSGSRDGKILNHDVRISQHVVSTLQGHRQEVCGLKWSPD 312 (484)
T ss_pred cCCeEEEEe--hhhccccccccCCcCceeEEEecc--CceEEEecCCCcEEEEEEecchhhhhhhhcccceeeeeEECCC
Confidence 456777777 445567788888 99999999999 7789999999999999998776555533899999999999999
Q ss_pred CCCcEEEEEECCCcEEEEECCCCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEe--CCCcEEEEecCCCCC
Q 004477 105 TSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSAS--EDGTLRQHDFRQGSS 182 (751)
Q Consensus 105 s~~~~l~sgs~Dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s--~Dg~I~iwDlr~~~~ 182 (751)
+.++|+|+.|+.|.|||.... +++..+..|...|+.++|+|-.+.+||+|+ .|++|++||+.++..
T Consensus 313 --~~~lASGgnDN~~~Iwd~~~~----------~p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~ 380 (484)
T KOG0305|consen 313 --GNQLASGGNDNVVFIWDGLSP----------EPKFTFTEHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTGAR 380 (484)
T ss_pred --CCeeccCCCccceEeccCCCc----------cccEEEeccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCCcE
Confidence 899999999999999999543 678899999999999999998888999975 699999999998874
Q ss_pred CCCCCCCCCccceEEEecccCceecccCCCCCccceEEEEEeCCCCcEEEE-EeCCCeEEEEeCCCCCCccccCCCCCCC
Q 004477 183 CPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLV-GGSDAFARLYDRRMLPPLTSCQKRMSPP 261 (751)
Q Consensus 183 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~s-gs~D~~IriwD~~~~~~~~~~~~~~~~~ 261 (751)
+... .....|.++.|++...+++.+ |-.++.|.||+..+.+.+..+
T Consensus 381 i~~v--------------------------dtgsQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~~~~~~l------- 427 (484)
T KOG0305|consen 381 IDSV--------------------------DTGSQVCSLIWSKKYKELLSTHGYSENQITLWKYPSMKLVAEL------- 427 (484)
T ss_pred eccc--------------------------ccCCceeeEEEcCCCCEEEEecCCCCCcEEEEeccccceeeee-------
Confidence 3211 124578999999964334443 446789999999876654433
Q ss_pred CccccccccccccCCccccceEEEEEcCCCCEEEEEeCCCcEEEEECCCC
Q 004477 262 PCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHA 311 (751)
Q Consensus 262 ~~~~~~~~~~~~~~g~~~~~vt~v~fspdg~~Ll~~s~d~~I~lwdl~~~ 311 (751)
.||.. .|..+++||||..|++++.|+++++|++-..
T Consensus 428 -------------~gH~~-RVl~la~SPdg~~i~t~a~DETlrfw~~f~~ 463 (484)
T KOG0305|consen 428 -------------LGHTS-RVLYLALSPDGETIVTGAADETLRFWNLFDE 463 (484)
T ss_pred -------------cCCcc-eeEEEEECCCCCEEEEecccCcEEeccccCC
Confidence 45666 5999999999999999999999999999884
No 116
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.85 E-value=2.6e-19 Score=176.16 Aligned_cols=257 Identities=17% Similarity=0.177 Sum_probs=195.2
Q ss_pred cccccchhhhccccccEEeccCCCcEEEEEECCCCCEEEEEeC--CCcEEEEeCCCCeEEEEecccCCcceEEEEEecCC
Q 004477 28 HSLQMHSSLVRRLSQERELEGHQGCVNAISWNSKGSLLISGSD--DTHINVWSYSSRKLLHSIETGHSANVFCTKFVPET 105 (751)
Q Consensus 28 ~~l~~~~~~i~~~~~~~~L~gH~~~V~~l~~s~dg~~LaSgs~--Dg~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~s 105 (751)
..|++++ ..+.++.+++.-++-.|..++|....+.++.++. |.+|+.-++.+.+.+..+ .||...|++++.+|-
T Consensus 36 Dsl~LYd--~~~g~~~~ti~skkyG~~~~~Fth~~~~~i~sStk~d~tIryLsl~dNkylRYF-~GH~~~V~sL~~sP~- 111 (311)
T KOG1446|consen 36 DSLRLYD--SLSGKQVKTINSKKYGVDLACFTHHSNTVIHSSTKEDDTIRYLSLHDNKYLRYF-PGHKKRVNSLSVSPK- 111 (311)
T ss_pred CeEEEEE--cCCCceeeEeecccccccEEEEecCCceEEEccCCCCCceEEEEeecCceEEEc-CCCCceEEEEEecCC-
Confidence 4556655 3456688888889999999999988887777776 899999999999999999 899999999999999
Q ss_pred CCcEEEEEECCCcEEEEECCCCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCCCC
Q 004477 106 SDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPP 185 (751)
Q Consensus 106 ~~~~l~sgs~Dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~ 185 (751)
++.++|++.|++|++||++.. ++...+. ...-..++|.| .|-+||++.....|++||+|.-..-+.
T Consensus 112 -~d~FlS~S~D~tvrLWDlR~~----------~cqg~l~--~~~~pi~AfDp-~GLifA~~~~~~~IkLyD~Rs~dkgPF 177 (311)
T KOG1446|consen 112 -DDTFLSSSLDKTVRLWDLRVK----------KCQGLLN--LSGRPIAAFDP-EGLIFALANGSELIKLYDLRSFDKGPF 177 (311)
T ss_pred -CCeEEecccCCeEEeeEecCC----------CCceEEe--cCCCcceeECC-CCcEEEEecCCCeEEEEEecccCCCCc
Confidence 799999999999999999964 2233332 22233578999 668888888877999999998642111
Q ss_pred CCCCCCccceEEEecccCceecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCccccCCCCCCCCccc
Q 004477 186 AGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVN 265 (751)
Q Consensus 186 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~~~~~~~~~~~~~~~ 265 (751)
..+..........+.+.|+| +|++|+.+...+.+++.|.-.+....++....
T Consensus 178 --------------------~tf~i~~~~~~ew~~l~FS~-dGK~iLlsT~~s~~~~lDAf~G~~~~tfs~~~------- 229 (311)
T KOG1446|consen 178 --------------------TTFSITDNDEAEWTDLEFSP-DGKSILLSTNASFIYLLDAFDGTVKSTFSGYP------- 229 (311)
T ss_pred --------------------eeEccCCCCccceeeeEEcC-CCCEEEEEeCCCcEEEEEccCCcEeeeEeecc-------
Confidence 00111112456789999999 58999999999999999998887544432110
Q ss_pred cccccccccCCccccceEEEEEcCCCCEEEEEeCCCcEEEEECCCCCcceeeee-cCCCceeEEeCCCCCCcccCCC
Q 004477 266 YFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYT-VGDASKIMSFTPTLNGLELQPP 341 (751)
Q Consensus 266 ~~~~~~~~~~g~~~~~vt~v~fspdg~~Ll~~s~d~~I~lwdl~~~~~~~~~~~-~~~~~~~~~~sp~~~~~~~~~~ 341 (751)
..... --+.+|+||++++++|+.||+|++|+++++.+.....+ .......+.|+|.....+.+..
T Consensus 230 ----------~~~~~-~~~a~ftPds~Fvl~gs~dg~i~vw~~~tg~~v~~~~~~~~~~~~~~~fnP~~~mf~sa~s 295 (311)
T KOG1446|consen 230 ----------NAGNL-PLSATFTPDSKFVLSGSDDGTIHVWNLETGKKVAVLRGPNGGPVSCVRFNPRYAMFVSASS 295 (311)
T ss_pred ----------CCCCc-ceeEEECCCCcEEEEecCCCcEEEEEcCCCcEeeEecCCCCCCccccccCCceeeeeecCc
Confidence 00111 24678999999999999999999999999877766666 3667777778887655544433
No 117
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.85 E-value=4.7e-19 Score=182.87 Aligned_cols=270 Identities=16% Similarity=0.203 Sum_probs=184.1
Q ss_pred cEEeccCCCcEEEEEECCCCCEEEEEeCCC--------cEEEEeCCCCeEEEEecccCCcceEEEEEecCCCCcEEEEE-
Q 004477 43 ERELEGHQGCVNAISWNSKGSLLISGSDDT--------HINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSG- 113 (751)
Q Consensus 43 ~~~L~gH~~~V~~l~~s~dg~~LaSgs~Dg--------~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~s~~~~l~sg- 113 (751)
.+.+-||+..|.|+..+|+--++|+|-.-| .|+|||..+-..++.+ ......|.||+|++.+.|.+|+.-
T Consensus 97 Qr~y~GH~ddikc~~vHPdri~vatGQ~ag~~g~~~~phvriWdsv~L~TL~V~-g~f~~GV~~vaFsk~~~G~~l~~vD 175 (626)
T KOG2106|consen 97 QRHYLGHNDDIKCMAVHPDRIRVATGQGAGTSGRPLQPHVRIWDSVTLSTLHVI-GFFDRGVTCVAFSKINGGSLLCAVD 175 (626)
T ss_pred cccccCCCCceEEEeecCCceeeccCcccccCCCcCCCeeeecccccceeeeee-ccccccceeeeecccCCCceEEEec
Confidence 455779999999999999999999886655 4999998888778877 466778999999998767777654
Q ss_pred -ECCCcEEEEECCCCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCCCCCC-----
Q 004477 114 -AGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAG----- 187 (751)
Q Consensus 114 -s~Dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~~~----- 187 (751)
+.+..+.|||.... ......++-+..|....|+|.+++++++++. |.+.+|+++.+.......
T Consensus 176 ~s~~h~lSVWdWqk~----------~~~~~vk~sne~v~~a~FHPtd~nliit~Gk-~H~~Fw~~~~~~l~k~~~~fek~ 244 (626)
T KOG2106|consen 176 DSNPHMLSVWDWQKK----------AKLGPVKTSNEVVFLATFHPTDPNLIITCGK-GHLYFWTLRGGSLVKRQGIFEKR 244 (626)
T ss_pred CCCccccchhhchhh----------hccCcceeccceEEEEEeccCCCcEEEEeCC-ceEEEEEccCCceEEEeeccccc
Confidence 45678899999864 2244455567788899999999999988887 789999998875442221
Q ss_pred -----------------CCCCccceEEEecccCceecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCC
Q 004477 188 -----------------SSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPP 250 (751)
Q Consensus 188 -----------------~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~ 250 (751)
.++......+|+........ .. ..|...|.++..-.+ + .|++|+.|..|..|| ...++
T Consensus 245 ekk~Vl~v~F~engdviTgDS~G~i~Iw~~~~~~~~k-~~-~aH~ggv~~L~~lr~-G-tllSGgKDRki~~Wd-~~y~k 319 (626)
T KOG2106|consen 245 EKKFVLCVTFLENGDVITGDSGGNILIWSKGTNRISK-QV-HAHDGGVFSLCMLRD-G-TLLSGGKDRKIILWD-DNYRK 319 (626)
T ss_pred cceEEEEEEEcCCCCEEeecCCceEEEEeCCCceEEe-Ee-eecCCceEEEEEecC-c-cEeecCccceEEecc-ccccc
Confidence 12222333344443222211 11 268888999998874 4 566699999999999 44443
Q ss_pred ccccCCC--CCCCCcccccc-------------cc------ccccCCccccceEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 004477 251 LTSCQKR--MSPPPCVNYFC-------------PM------HLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVN 309 (751)
Q Consensus 251 ~~~~~~~--~~~~~~~~~~~-------------~~------~~~~~g~~~~~vt~v~fspdg~~Ll~~s~d~~I~lwdl~ 309 (751)
+...+.+ ..+++.+..-. .+ .+...||.. ....++.+|+.+.+++++.|++++||+
T Consensus 320 ~r~~elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~d-elwgla~hps~~q~~T~gqdk~v~lW~-- 396 (626)
T KOG2106|consen 320 LRETELPEQFGPIRTVAEGKGDILVGTTRNFILQGTLENGFTLTVQGHGD-ELWGLATHPSKNQLLTCGQDKHVRLWN-- 396 (626)
T ss_pred cccccCchhcCCeeEEecCCCcEEEeeccceEEEeeecCCceEEEEeccc-ceeeEEcCCChhheeeccCcceEEEcc--
Confidence 3322211 11111110000 00 011134555 588999999999999999999999999
Q ss_pred CCCcceeeeecCCCceeEEeCCCC
Q 004477 310 HAGGRAMRYTVGDASKIMSFTPTL 333 (751)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~~~sp~~ 333 (751)
..+.........+.....|+|..
T Consensus 397 -~~k~~wt~~~~d~~~~~~fhpsg 419 (626)
T KOG2106|consen 397 -DHKLEWTKIIEDPAECADFHPSG 419 (626)
T ss_pred -CCceeEEEEecCceeEeeccCcc
Confidence 23344444556667777777754
No 118
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.85 E-value=1.5e-19 Score=176.87 Aligned_cols=265 Identities=14% Similarity=0.120 Sum_probs=190.0
Q ss_pred CCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEecccCCcceEEEEEecCCCCcEEEEEECCCcEEEEECCCCCC
Q 004477 50 QGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSG 129 (751)
Q Consensus 50 ~~~V~~l~~s~dg~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~Dg~V~vwd~~~~~~ 129 (751)
.+.|..|.|+|.++.|+.+++||.+++||+........+ .|..++.+++|.++ ..+++|+.||.|+++|+.++.
T Consensus 13 ~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l~~~~--~~~~plL~c~F~d~---~~~~~G~~dg~vr~~Dln~~~- 86 (323)
T KOG1036|consen 13 EDGISSVKFSPSSSDLLVSSWDGSLRLYDVPANSLKLKF--KHGAPLLDCAFADE---STIVTGGLDGQVRRYDLNTGN- 86 (323)
T ss_pred hhceeeEEEcCcCCcEEEEeccCcEEEEeccchhhhhhe--ecCCceeeeeccCC---ceEEEeccCceEEEEEecCCc-
Confidence 678999999999999999999999999999877665555 58999999999986 689999999999999999753
Q ss_pred CCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCCCCCCC----------------CCCcc
Q 004477 130 RGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGS----------------SHQEC 193 (751)
Q Consensus 130 ~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~~~~----------------~~~~~ 193 (751)
...+..|...|.+|.+++ ....+++||.|++|++||.|.......... +..+.
T Consensus 87 ----------~~~igth~~~i~ci~~~~-~~~~vIsgsWD~~ik~wD~R~~~~~~~~d~~kkVy~~~v~g~~LvVg~~~r 155 (323)
T KOG1036|consen 87 ----------EDQIGTHDEGIRCIEYSY-EVGCVISGSWDKTIKFWDPRNKVVVGTFDQGKKVYCMDVSGNRLVVGTSDR 155 (323)
T ss_pred ----------ceeeccCCCceEEEEeec-cCCeEEEcccCccEEEEeccccccccccccCceEEEEeccCCEEEEeecCc
Confidence 456678999999999998 556788999999999999996332211111 11122
Q ss_pred ceEEEecccCceecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCccccCCCCCCCCccccccccccc
Q 004477 194 RNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLS 273 (751)
Q Consensus 194 ~~~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (751)
...+|+++.-...........+..+.|+++.| .+.=+++++.||.|.+=.+...+...+ ....-+|.+...
T Consensus 156 ~v~iyDLRn~~~~~q~reS~lkyqtR~v~~~p-n~eGy~~sSieGRVavE~~d~s~~~~s---kkyaFkCHr~~~----- 226 (323)
T KOG1036|consen 156 KVLIYDLRNLDEPFQRRESSLKYQTRCVALVP-NGEGYVVSSIEGRVAVEYFDDSEEAQS---KKYAFKCHRLSE----- 226 (323)
T ss_pred eEEEEEcccccchhhhccccceeEEEEEEEec-CCCceEEEeecceEEEEccCCchHHhh---hceeEEeeeccc-----
Confidence 23455655433322222334567889999999 467788899999998765554321111 000011111110
Q ss_pred cCCccccceEEEEEcCCCCEEEEEeCCCcEEEEECCCCCcceeeeecCCCceeEEeCCCCCCcccCC
Q 004477 274 EHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVGDASKIMSFTPTLNGLELQP 340 (751)
Q Consensus 274 ~~g~~~~~vt~v~fspdg~~Ll~~s~d~~I~lwdl~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~ 340 (751)
......++|++++|+|-...|++|+.||.|.+||+.+.+....+..-...+..++|+-++..++.+.
T Consensus 227 ~~~~~~yPVNai~Fhp~~~tfaTgGsDG~V~~Wd~~~rKrl~q~~~~~~SI~slsfs~dG~~LAia~ 293 (323)
T KOG1036|consen 227 KDTEIIYPVNAIAFHPIHGTFATGGSDGIVNIWDLFNRKRLKQLAKYETSISSLSFSMDGSLLAIAS 293 (323)
T ss_pred CCceEEEEeceeEeccccceEEecCCCceEEEccCcchhhhhhccCCCCceEEEEeccCCCeEEEEe
Confidence 0111235799999999999999999999999999999655444444455677788888777666554
No 119
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.85 E-value=2.3e-19 Score=175.12 Aligned_cols=259 Identities=16% Similarity=0.228 Sum_probs=178.9
Q ss_pred ccCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCC----eEEEEecccCCcceEEEEEecCCCCcEEEEEECCCcEEEE
Q 004477 47 EGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSR----KLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLF 122 (751)
Q Consensus 47 ~gH~~~V~~l~~s~dg~~LaSgs~Dg~I~IWd~~~~----~~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~Dg~V~vw 122 (751)
.+|.+-|+|+.|.+.|+.+||||.|++|+|||..+. .+.... ..|.+.|..|.|.+..-|+.+|+|+.|++|.||
T Consensus 10 s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~W-rah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iW 88 (361)
T KOG2445|consen 10 SGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSW-RAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIW 88 (361)
T ss_pred cCCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeE-EecCCcEEEEEecCccccceEEEEecCCceeee
Confidence 589999999999999999999999999999996432 344455 789999999999877669999999999999999
Q ss_pred ECCCCCCCCCCCCCCCCceeecccCCceeEEEEecC-CCCEEEEEeCCCcEEEEecCCCCCCC-------------CCCC
Q 004477 123 NLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVG-NPHVVWSASEDGTLRQHDFRQGSSCP-------------PAGS 188 (751)
Q Consensus 123 d~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~-~~~~l~s~s~Dg~I~iwDlr~~~~~~-------------~~~~ 188 (751)
.-...+..+ .........++......|++|.|.|. -+-.+++++.||++|||+.-..-.+. +...
T Consensus 89 EE~~~~~~~-~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~ 167 (361)
T KOG2445|consen 89 EEQEKSEEA-HGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPGK 167 (361)
T ss_pred eeccccccc-ccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCccc
Confidence 874221111 00112345667778899999999983 34579999999999999876543220 0000
Q ss_pred CCCcc---------------------------ceEEEecccC--ceecccCCCCCccceEEEEEeCCCC---cEEEEEeC
Q 004477 189 SHQEC---------------------------RNILLDLRCG--AKRSLADPPKQTLSLKSCDISSTRP---HLLLVGGS 236 (751)
Q Consensus 189 ~~~~~---------------------------~~~l~~~~~~--~~~~~~~~~~~~~~v~~i~~sp~~~---~~l~sgs~ 236 (751)
.+..| ..+++....+ +...+...+++..+|++++|.|.-+ ++|++++.
T Consensus 168 ~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn~Gr~y~~lAvA~k 247 (361)
T KOG2445|consen 168 NKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPNIGRSYHLLAVATK 247 (361)
T ss_pred ccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeeccccCCceeeEEEeec
Confidence 11111 1223332222 2345667778999999999999644 58999999
Q ss_pred CCeEEEEeCCCCC-CccccCCCCCCCCccccccccccccCCccccceEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 004477 237 DAFARLYDRRMLP-PLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNH 310 (751)
Q Consensus 237 D~~IriwD~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~vt~v~fspdg~~Ll~~s~d~~I~lwdl~~ 310 (751)
|| |+||.+.... ++. +.....+.....+....+...+.+++.|..+.|+-.|..|.+.+.||.|++|..+-
T Consensus 248 Dg-v~I~~v~~~~s~i~--~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtGtiLsStGdDG~VRLWkany 319 (361)
T KOG2445|consen 248 DG-VRIFKVKVARSAIE--EEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTGTILSSTGDDGCVRLWKANY 319 (361)
T ss_pred Cc-EEEEEEeeccchhh--hhcccCCCCccccceEEeeeccCCCCceEEEEEeeeeeEEeecCCCceeeehhhhh
Confidence 99 9999998432 110 11111111111121112222223334799999999999999999999999997654
No 120
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.85 E-value=2.4e-19 Score=188.38 Aligned_cols=217 Identities=18% Similarity=0.265 Sum_probs=156.2
Q ss_pred ccEEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEecccCCcceEEEEEecCCCCcEEEEEECCCcEEE
Q 004477 42 QERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRL 121 (751)
Q Consensus 42 ~~~~L~gH~~~V~~l~~s~dg~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~Dg~V~v 121 (751)
+...++||++.|.||...|.|.+||+|++||+|+||.+.+|.++.++. ..+.|.||+|+|.++ .-|+.++....+.|
T Consensus 392 ~~lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~--~d~~I~~vaw~P~~~-~~vLAvA~~~~~~i 468 (733)
T KOG0650|consen 392 CALVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQ--FDSEIRSVAWNPLSD-LCVLAVAVGECVLI 468 (733)
T ss_pred eeeeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEe--ecceeEEEEecCCCC-ceeEEEEecCceEE
Confidence 456789999999999999999999999999999999999999999883 456899999999974 44444444455766
Q ss_pred EECCCCCCCC-------C-CC-CC------------------CCCceeecccCCceeEEEEecCCCCEEEEEeCC---Cc
Q 004477 122 FNLSRFSGRG-------L-DD-NA------------------ITPSALYQCHTRRVKKLAVEVGNPHVVWSASED---GT 171 (751)
Q Consensus 122 wd~~~~~~~~-------~-~~-~~------------------~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~D---g~ 171 (751)
-+..-+.... + .. +. ..-++..-.|...|+.|.|+- .|.+|++..-+ ..
T Consensus 469 vnp~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHr-kGDYlatV~~~~~~~~ 547 (733)
T KOG0650|consen 469 VNPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHR-KGDYLATVMPDSGNKS 547 (733)
T ss_pred eCccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeec-CCceEEEeccCCCcce
Confidence 6655431100 0 00 00 011234456889999999998 67888876554 46
Q ss_pred EEEEecCCCCCCCCCCCCCCccceEEEecccCceecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCc
Q 004477 172 LRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPL 251 (751)
Q Consensus 172 I~iwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~ 251 (751)
|.|+++...... .-+....+.|.++.|+|.. .+|++++ -..|||||+.....+
T Consensus 548 VliHQLSK~~sQ-------------------------~PF~kskG~vq~v~FHPs~-p~lfVaT-q~~vRiYdL~kqelv 600 (733)
T KOG0650|consen 548 VLIHQLSKRKSQ-------------------------SPFRKSKGLVQRVKFHPSK-PYLFVAT-QRSVRIYDLSKQELV 600 (733)
T ss_pred EEEEeccccccc-------------------------CchhhcCCceeEEEecCCC-ceEEEEe-ccceEEEehhHHHHH
Confidence 888888765422 1111245678899999975 4555544 467999999865433
Q ss_pred cccCCCCCCCCccccccccccccCCccccceEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 004477 252 TSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNH 310 (751)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~vt~v~fspdg~~Ll~~s~d~~I~lwdl~~ 310 (751)
.++. + | ..+|.+++.+|.|..|++++.|+.+..||+.-
T Consensus 601 KkL~-------------t------g--~kwiS~msihp~GDnli~gs~d~k~~WfDldl 638 (733)
T KOG0650|consen 601 KKLL-------------T------G--SKWISSMSIHPNGDNLILGSYDKKMCWFDLDL 638 (733)
T ss_pred HHHh-------------c------C--CeeeeeeeecCCCCeEEEecCCCeeEEEEccc
Confidence 3221 1 0 12699999999999999999999999999877
No 121
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.85 E-value=2.4e-20 Score=199.36 Aligned_cols=202 Identities=27% Similarity=0.417 Sum_probs=167.6
Q ss_pred hccccccEEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEecccCCcceEEEEEecCCCCcEEEEEECC
Q 004477 37 VRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGD 116 (751)
Q Consensus 37 i~~~~~~~~L~gH~~~V~~l~~s~dg~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~D 116 (751)
.....+..+|+||+..|.|+....++. |+|||.|.+++||-.. ++...+ .+|...|+++++.|+ +.++|||.|
T Consensus 88 ~~~~~P~~~LkgH~snVC~ls~~~~~~-~iSgSWD~TakvW~~~--~l~~~l-~gH~asVWAv~~l~e---~~~vTgsaD 160 (745)
T KOG0301|consen 88 LSQAEPLYTLKGHKSNVCSLSIGEDGT-LISGSWDSTAKVWRIG--ELVYSL-QGHTASVWAVASLPE---NTYVTGSAD 160 (745)
T ss_pred cCCCCchhhhhccccceeeeecCCcCc-eEecccccceEEecch--hhhccc-CCcchheeeeeecCC---CcEEeccCc
Confidence 445678899999999999999998888 9999999999999864 444556 899999999999998 499999999
Q ss_pred CcEEEEECCCCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCCCCCCCCCCccceE
Q 004477 117 AEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNI 196 (751)
Q Consensus 117 g~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~~~~~~~~~~~~ 196 (751)
.+|++|.-. +.+++|.+|++.|+.+++-+ + ..|+||+.||.|+.|++. +..
T Consensus 161 KtIklWk~~------------~~l~tf~gHtD~VRgL~vl~-~-~~flScsNDg~Ir~w~~~-ge~-------------- 211 (745)
T KOG0301|consen 161 KTIKLWKGG------------TLLKTFSGHTDCVRGLAVLD-D-SHFLSCSNDGSIRLWDLD-GEV-------------- 211 (745)
T ss_pred ceeeeccCC------------chhhhhccchhheeeeEEec-C-CCeEeecCCceEEEEecc-Cce--------------
Confidence 999999876 55899999999999999998 4 346699999999999994 331
Q ss_pred EEecccCceecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCccccCCCCCCCCccccccccccccCC
Q 004477 197 LLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHG 276 (751)
Q Consensus 197 l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 276 (751)
+....+|...|++++..+. ...+++++.|+++|||+... |++.. .
T Consensus 212 -----------l~~~~ghtn~vYsis~~~~-~~~Ivs~gEDrtlriW~~~e---------------~~q~I--------~ 256 (745)
T KOG0301|consen 212 -----------LLEMHGHTNFVYSISMALS-DGLIVSTGEDRTLRIWKKDE---------------CVQVI--------T 256 (745)
T ss_pred -----------eeeeeccceEEEEEEecCC-CCeEEEecCCceEEEeecCc---------------eEEEE--------e
Confidence 3344568889999997774 57999999999999999762 33322 1
Q ss_pred ccccceEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 004477 277 RSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNH 310 (751)
Q Consensus 277 ~~~~~vt~v~fspdg~~Ll~~s~d~~I~lwdl~~ 310 (751)
++...|+++++-++|. |++|++||.||||....
T Consensus 257 lPttsiWsa~~L~NgD-Ivvg~SDG~VrVfT~~k 289 (745)
T KOG0301|consen 257 LPTTSIWSAKVLLNGD-IVVGGSDGRVRVFTVDK 289 (745)
T ss_pred cCccceEEEEEeeCCC-EEEeccCceEEEEEecc
Confidence 2233589999999998 68999999999998775
No 122
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.84 E-value=1.1e-20 Score=203.93 Aligned_cols=218 Identities=17% Similarity=0.222 Sum_probs=177.2
Q ss_pred cccccEEeccCCCcEEEEEECC-CCCEEEEEeCCCcEEEEeCCCCeEEEEecccCCcceEEEEEecCCCCcEEEEEECCC
Q 004477 39 RLSQERELEGHQGCVNAISWNS-KGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDA 117 (751)
Q Consensus 39 ~~~~~~~L~gH~~~V~~l~~s~-dg~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~Dg 117 (751)
+-+++..|..|+..|+++.|++ ...+|+|||.||+|++||+...+...++ .+....|.+|+|+|.. +.+|+++...|
T Consensus 122 rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~~t~-~~nSESiRDV~fsp~~-~~~F~s~~dsG 199 (839)
T KOG0269|consen 122 RNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSKSTF-RSNSESIRDVKFSPGY-GNKFASIHDSG 199 (839)
T ss_pred cchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeecccccccc-cccchhhhceeeccCC-CceEEEecCCc
Confidence 4567788999999999999998 4579999999999999999988888777 6788999999999987 89999999999
Q ss_pred cEEEEECCCCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCCCCCCCCCCccceEE
Q 004477 118 EVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNIL 197 (751)
Q Consensus 118 ~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~~~~~~~~~~~~l 197 (751)
.+++||++... ++...+..|+++|.++.|+| ++.+|||||.|++|+|||+.+++.-. ...+
T Consensus 200 ~lqlWDlRqp~---------r~~~k~~AH~GpV~c~nwhP-nr~~lATGGRDK~vkiWd~t~~~~~~---------~~tI 260 (839)
T KOG0269|consen 200 YLQLWDLRQPD---------RCEKKLTAHNGPVLCLNWHP-NREWLATGGRDKMVKIWDMTDSRAKP---------KHTI 260 (839)
T ss_pred eEEEeeccCch---------hHHHHhhcccCceEEEeecC-CCceeeecCCCccEEEEeccCCCccc---------eeEE
Confidence 99999999753 56778899999999999999 88999999999999999998765221 0111
Q ss_pred EecccCceecccCCCCCccceEEEEEeCCCCcEEEEEe--CCCeEEEEeCCCCCCccccCCCCCCCCccccccccccccC
Q 004477 198 LDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGG--SDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEH 275 (751)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs--~D~~IriwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (751)
+ ...+|.++.|-|...+.|++++ .|..|+|||++.. |.|.+...
T Consensus 261 -n--------------Tiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRP------------------YIP~~t~~- 306 (839)
T KOG0269|consen 261 -N--------------TIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRP------------------YIPYATFL- 306 (839)
T ss_pred -e--------------ecceeeeeeeccCccchhhhhhccccceEEEEeeccc------------------cccceeee-
Confidence 0 2467999999998888898886 5889999999842 33333322
Q ss_pred CccccceEEEEEcC-CCCEEEEEeCCCcEEEEECCCCC
Q 004477 276 GRSSLHLTHVTFSP-NGEEVLLSYSGEHVYLMDVNHAG 312 (751)
Q Consensus 276 g~~~~~vt~v~fsp-dg~~Ll~~s~d~~I~lwdl~~~~ 312 (751)
-|.. .++.++|.. |-..|.+++.|+.|..-.+++..
T Consensus 307 eH~~-~vt~i~W~~~d~~~l~s~sKD~tv~qh~~knat 343 (839)
T KOG0269|consen 307 EHTD-SVTGIAWDSGDRINLWSCSKDGTVLQHLFKNAT 343 (839)
T ss_pred ccCc-cccceeccCCCceeeEeecCccHHHHhhhhccc
Confidence 2444 488999987 44567788889998887777643
No 123
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.84 E-value=3.9e-19 Score=173.56 Aligned_cols=140 Identities=15% Similarity=0.164 Sum_probs=105.7
Q ss_pred EEecccCCcceEEEEEecCCCCcEEEEEECCCcEEEEECCCCCCCCCCCCCCCCceeecccCCceeEEEEe-cCCCCEEE
Q 004477 86 HSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVE-VGNPHVVW 164 (751)
Q Consensus 86 ~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~Dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s-p~~~~~l~ 164 (751)
..|..+|.+-|.|+.|.+. |+.+|||+.|++|+|||.+..++. ..+....++|.+.|..|.|. |.=|+.++
T Consensus 6 ~pi~s~h~DlihdVs~D~~--GRRmAtCSsDq~vkI~d~~~~s~~------W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA 77 (361)
T KOG2445|consen 6 APIDSGHKDLIHDVSFDFY--GRRMATCSSDQTVKIWDSTSDSGT------WSCTSSWRAHDGSIWRVVWAHPEFGQVVA 77 (361)
T ss_pred cccccCCcceeeeeeeccc--CceeeeccCCCcEEEEeccCCCCc------eEEeeeEEecCCcEEEEEecCccccceEE
Confidence 4455789999999999999 899999999999999998765443 36677889999999999996 55678999
Q ss_pred EEeCCCcEEEEecCCCCCCCCCCCCCCccceEEEecccCceecccCCCCCccceEEEEEeCCC-CcEEEEEeCCCeEEEE
Q 004477 165 SASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTR-PHLLLVGGSDAFARLY 243 (751)
Q Consensus 165 s~s~Dg~I~iwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~-~~~l~sgs~D~~Iriw 243 (751)
+|+.|+++.||.=.... .++...-| ............|+++.|.|.. +-.|++++.||+||||
T Consensus 78 ~cS~Drtv~iWEE~~~~---------~~~~~~~W-------v~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIY 141 (361)
T KOG2445|consen 78 TCSYDRTVSIWEEQEKS---------EEAHGRRW-------VRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIY 141 (361)
T ss_pred EEecCCceeeeeecccc---------ccccccee-------EEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEE
Confidence 99999999999743211 00000000 1111222345789999999953 4579999999999999
Q ss_pred eCCCCC
Q 004477 244 DRRMLP 249 (751)
Q Consensus 244 D~~~~~ 249 (751)
+.-..-
T Consensus 142 EA~dp~ 147 (361)
T KOG2445|consen 142 EAPDPM 147 (361)
T ss_pred ecCCcc
Confidence 986544
No 124
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.84 E-value=2.6e-21 Score=207.29 Aligned_cols=204 Identities=24% Similarity=0.408 Sum_probs=176.2
Q ss_pred hhccccccEEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEecccCCcceEEEEEecCCCCcEEEEEEC
Q 004477 36 LVRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAG 115 (751)
Q Consensus 36 ~i~~~~~~~~L~gH~~~V~~l~~s~dg~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~ 115 (751)
-+.+...+..|.+|...|-+|.|+++..+|++|+.||+|++||++..+.++++ .||..++.+|.|+|. +.++++|+.
T Consensus 56 ~i~kp~~i~S~~~hespIeSl~f~~~E~LlaagsasgtiK~wDleeAk~vrtL-tgh~~~~~sv~f~P~--~~~~a~gSt 132 (825)
T KOG0267|consen 56 AIGKPNAITSLTGHESPIESLTFDTSERLLAAGSASGTIKVWDLEEAKIVRTL-TGHLLNITSVDFHPY--GEFFASGST 132 (825)
T ss_pred cccCCchhheeeccCCcceeeecCcchhhhcccccCCceeeeehhhhhhhhhh-hccccCcceeeeccc--eEEeccccc
Confidence 35555666779999999999999999999999999999999999999999999 999999999999999 899999999
Q ss_pred CCcEEEEECCCCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCCCCCCCCCCccce
Q 004477 116 DAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRN 195 (751)
Q Consensus 116 Dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~~~~~~~~~~~ 195 (751)
|+.+++||++.. .|.+.+.+|...|..++|+| ++.+++++++|.++++||+..++..
T Consensus 133 dtd~~iwD~Rk~----------Gc~~~~~s~~~vv~~l~lsP-~Gr~v~~g~ed~tvki~d~~agk~~------------ 189 (825)
T KOG0267|consen 133 DTDLKIWDIRKK----------GCSHTYKSHTRVVDVLRLSP-DGRWVASGGEDNTVKIWDLTAGKLS------------ 189 (825)
T ss_pred cccceehhhhcc----------CceeeecCCcceeEEEeecC-CCceeeccCCcceeeeecccccccc------------
Confidence 999999999853 67899999999999999999 7799999999999999999888632
Q ss_pred EEEecccCceecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCccccCCCCCCCCccccccccccccC
Q 004477 196 ILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEH 275 (751)
Q Consensus 196 ~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (751)
..+..|...+.++.|+|. ..++++|+.|++|++||+++...+.+..
T Consensus 190 -------------~ef~~~e~~v~sle~hp~-e~Lla~Gs~d~tv~f~dletfe~I~s~~-------------------- 235 (825)
T KOG0267|consen 190 -------------KEFKSHEGKVQSLEFHPL-EVLLAPGSSDRTVRFWDLETFEVISSGK-------------------- 235 (825)
T ss_pred -------------cccccccccccccccCch-hhhhccCCCCceeeeeccceeEEeeccC--------------------
Confidence 334557788999999995 6899999999999999999765443221
Q ss_pred CccccceEEEEEcCCCCEEEEEeCC
Q 004477 276 GRSSLHLTHVTFSPNGEEVLLSYSG 300 (751)
Q Consensus 276 g~~~~~vt~v~fspdg~~Ll~~s~d 300 (751)
.....|.+++|+|+|..+++|...
T Consensus 236 -~~~~~v~~~~fn~~~~~~~~G~q~ 259 (825)
T KOG0267|consen 236 -PETDGVRSLAFNPDGKIVLSGEQI 259 (825)
T ss_pred -CccCCceeeeecCCceeeecCchh
Confidence 011259999999999998887654
No 125
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.84 E-value=5.2e-20 Score=187.79 Aligned_cols=211 Identities=21% Similarity=0.291 Sum_probs=168.6
Q ss_pred ccCCCcEEEEEECCC-CCEEEEEeCCCcEEEEeCCCCeEEEEecccCCcceEEEEEecCCCCcEEEEEECCCcEEEEECC
Q 004477 47 EGHQGCVNAISWNSK-GSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLS 125 (751)
Q Consensus 47 ~gH~~~V~~l~~s~d-g~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~Dg~V~vwd~~ 125 (751)
.||++.|.+|+|+.. .+.|||||.|.+|++||+.++++..++ ..|.+.|.+++|+|.. ..+|++|+.|++|.+.|.+
T Consensus 240 ~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~lWD~~~g~p~~s~-~~~~k~Vq~l~wh~~~-p~~LLsGs~D~~V~l~D~R 317 (463)
T KOG0270|consen 240 SGHTDAVLALSWNRNFRNVLASGSADKTVKLWDVDTGKPKSSI-THHGKKVQTLEWHPYE-PSVLLSGSYDGTVALKDCR 317 (463)
T ss_pred ccchHHHHHHHhccccceeEEecCCCceEEEEEcCCCCcceeh-hhcCCceeEEEecCCC-ceEEEeccccceEEeeecc
Confidence 489999999999985 459999999999999999999999998 7899999999999997 7999999999999999999
Q ss_pred CCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCCCCCCCCCCccceEEEecccCce
Q 004477 126 RFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAK 205 (751)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~ 205 (751)
.... .-..+ .-.+.|-.++|.|...+.|+++..||+|+-+|+|....+
T Consensus 318 ~~~~---------s~~~w-k~~g~VEkv~w~~~se~~f~~~tddG~v~~~D~R~~~~~---------------------- 365 (463)
T KOG0270|consen 318 DPSN---------SGKEW-KFDGEVEKVAWDPHSENSFFVSTDDGTVYYFDIRNPGKP---------------------- 365 (463)
T ss_pred Cccc---------cCceE-EeccceEEEEecCCCceeEEEecCCceEEeeecCCCCCc----------------------
Confidence 5321 11222 246778899999988899999999999999999987532
Q ss_pred ecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCccccCCCCCCCCccccccccccccCCccccceEEE
Q 004477 206 RSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHV 285 (751)
Q Consensus 206 ~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~vt~v 285 (751)
++....|..+|.++++++..+.++++++.|+.|++|++....+..... |. -.-....|.
T Consensus 366 --vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~~~v~~---------------~~----~~~~rl~c~ 424 (463)
T KOG0270|consen 366 --VWTLKAHDDEISGLSVNIQTPGLLSTASTDKVVKLWKFDVDSPKSVKE---------------HS----FKLGRLHCF 424 (463)
T ss_pred --eeEEEeccCCcceEEecCCCCcceeeccccceEEEEeecCCCCccccc---------------cc----ccccceeec
Confidence 233344788999999999889999999999999999997654322110 00 001125677
Q ss_pred EEcCCCCE-EEEEeCCCcEEEEECCCCC
Q 004477 286 TFSPNGEE-VLLSYSGEHVYLMDVNHAG 312 (751)
Q Consensus 286 ~fspdg~~-Ll~~s~d~~I~lwdl~~~~ 312 (751)
++.|+-.+ |+.|+..+.++|||+.+..
T Consensus 425 ~~~~~~a~~la~GG~k~~~~vwd~~~~~ 452 (463)
T KOG0270|consen 425 ALDPDVAFTLAFGGEKAVLRVWDIFTNS 452 (463)
T ss_pred ccCCCcceEEEecCccceEEEeecccCh
Confidence 88887665 5566667789999998853
No 126
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.84 E-value=2.2e-19 Score=191.87 Aligned_cols=286 Identities=17% Similarity=0.218 Sum_probs=203.4
Q ss_pred ccccccccchhhhccccccEEeccCCCcEEEEEECCCCC---EEEEEeCCCcEEEEeCCCCe------------------
Q 004477 25 DVNHSLQMHSSLVRRLSQERELEGHQGCVNAISWNSKGS---LLISGSDDTHINVWSYSSRK------------------ 83 (751)
Q Consensus 25 ~~~~~l~~~~~~i~~~~~~~~L~gH~~~V~~l~~s~dg~---~LaSgs~Dg~I~IWd~~~~~------------------ 83 (751)
..+..+.++.....+++.+.+|+||.+-|..|+|...+. +|||+|.|..|+||.+.-+.
T Consensus 166 gs~~~v~~~s~~~d~f~~v~el~GH~DWIrsl~f~~~~~~~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~ 245 (764)
T KOG1063|consen 166 GSKFVVDLYSSSADSFARVAELEGHTDWIRSLAFARLGGDDLLLASSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSNLP 245 (764)
T ss_pred CcceEEEEeccCCcceeEEEEeeccchhhhhhhhhccCCCcEEEEecCCceEEEEEEEEecCCccccccccccccccCCc
Confidence 345667777777889999999999999999999987554 89999999999999764211
Q ss_pred ------EEE------EecccCCcceEEEEEecCCCCcEEEEEECCCcEEEEECCCCCCCCC-------------------
Q 004477 84 ------LLH------SIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGL------------------- 132 (751)
Q Consensus 84 ------~~~------~l~~~h~~~V~~v~fsp~s~~~~l~sgs~Dg~V~vwd~~~~~~~~~------------------- 132 (751)
.+. .+..||.+.|.++.|+|. +..|+|++.|.++.||.....+|.-.
T Consensus 246 ~f~~l~~i~~~is~eall~GHeDWV~sv~W~p~--~~~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~l 323 (764)
T KOG1063|consen 246 VFMILEEIQYRISFEALLMGHEDWVYSVWWHPE--GLDLLSASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGL 323 (764)
T ss_pred eeeeeeeEEEEEehhhhhcCcccceEEEEEccc--hhhheecccCcceEEEecCCccceEEEEEEeecccccccceeeEE
Confidence 111 223599999999999999 78999999999999998876533111
Q ss_pred -----------------------CCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCCCCCCCC
Q 004477 133 -----------------------DDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSS 189 (751)
Q Consensus 133 -----------------------~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~~~~~ 189 (751)
+.....+.....+|.+.|++++|.| .+.+|+|.|.|.|-|+|---..+.
T Consensus 324 w~~n~~~ii~~g~~Gg~hlWkt~d~~~w~~~~~iSGH~~~V~dv~W~p-sGeflLsvs~DQTTRlFa~wg~q~------- 395 (764)
T KOG1063|consen 324 WSPNSNVIIAHGRTGGFHLWKTKDKTFWTQEPVISGHVDGVKDVDWDP-SGEFLLSVSLDQTTRLFARWGRQQ------- 395 (764)
T ss_pred EcCCCCEEEEecccCcEEEEeccCccceeeccccccccccceeeeecC-CCCEEEEeccccceeeeccccccc-------
Confidence 0111123345678999999999999 668999999999999986442110
Q ss_pred CCccceEEEecccCceecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCC-----C--------------
Q 004477 190 HQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLP-----P-------------- 250 (751)
Q Consensus 190 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~-----~-------------- 250 (751)
....+..+..|...++|++|-+. ...+++|+.+..+|+|+....= .
T Consensus 396 --------------~wHEiaRPQiHGyDl~c~~~vn~-~~~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~ 460 (764)
T KOG1063|consen 396 --------------EWHEIARPQIHGYDLTCLSFVNE-DLQFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPD 460 (764)
T ss_pred --------------ceeeecccccccccceeeehccC-CceeeecccceeeeeecCcHHHHHHHHHHhCccccCchhccc
Confidence 02235666778999999999884 6789999999999999864310 0
Q ss_pred ---cc--------ccC--------------CCCCCCCccccccc------------cccccCCccccceEEEEEcCCCCE
Q 004477 251 ---LT--------SCQ--------------KRMSPPPCVNYFCP------------MHLSEHGRSSLHLTHVTFSPNGEE 293 (751)
Q Consensus 251 ---~~--------~~~--------------~~~~~~~~~~~~~~------------~~~~~~g~~~~~vt~v~fspdg~~ 293 (751)
+. .++ ......++.....| -.-...||. +.|++++.+|+|+.
T Consensus 461 gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~L~ePP~EdqLq~~tLwPEv~KLYGHG-yEv~~l~~s~~gnl 539 (764)
T KOG1063|consen 461 GANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPCELTEPPTEDQLQQNTLWPEVHKLYGHG-YEVYALAISPTGNL 539 (764)
T ss_pred ccccccccccCCCCcccccccccccceeeecccccCchhccCCChHHHHHHhccchhhHHhccCc-eeEEEEEecCCCCE
Confidence 00 000 00000000000001 001113553 47999999999999
Q ss_pred EEEEeCC-----CcEEEEECCCCCcceeeeecCCCceeEEeCCCCCCc
Q 004477 294 VLLSYSG-----EHVYLMDVNHAGGRAMRYTVGDASKIMSFTPTLNGL 336 (751)
Q Consensus 294 Ll~~s~d-----~~I~lwdl~~~~~~~~~~~~~~~~~~~~~sp~~~~~ 336 (751)
+++++.. ..|+||+..+..+......|.-.+..++|+|+..-+
T Consensus 540 iASaCKS~~~ehAvI~lw~t~~W~~~~~L~~HsLTVT~l~FSpdg~~L 587 (764)
T KOG1063|consen 540 IASACKSSLKEHAVIRLWNTANWLQVQELEGHSLTVTRLAFSPDGRYL 587 (764)
T ss_pred EeehhhhCCccceEEEEEeccchhhhheecccceEEEEEEECCCCcEE
Confidence 9998763 479999999987777677777788889999976543
No 127
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.83 E-value=7.3e-19 Score=172.49 Aligned_cols=205 Identities=19% Similarity=0.263 Sum_probs=147.4
Q ss_pred EEEECCCCCEEEEEeCCCcEEEEeCCCC------------eEEEEecccCCcceEEEEEe-------cCCCCcEEEEEEC
Q 004477 55 AISWNSKGSLLISGSDDTHINVWSYSSR------------KLLHSIETGHSANVFCTKFV-------PETSDELVVSGAG 115 (751)
Q Consensus 55 ~l~~s~dg~~LaSgs~Dg~I~IWd~~~~------------~~~~~l~~~h~~~V~~v~fs-------p~s~~~~l~sgs~ 115 (751)
.+.|+|||..|++-+.|..+.+|++... .....+.-.....|....|- |+ -.++++.+.
T Consensus 54 gckWSPDGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~--t~l~a~ssr 131 (406)
T KOG2919|consen 54 GCKWSPDGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPS--TNLFAVSSR 131 (406)
T ss_pred cceeCCCCceEEeecccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCc--cceeeeccc
Confidence 5789999999999999999999997421 01111212345668888876 45 478999999
Q ss_pred CCcEEEEECCCCCCCCCCCCCCCCceeecccCCc---eeEEEEecCCCCEEEEEeCCCcEEEEec-CCCCCCCCCCCCCC
Q 004477 116 DAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRR---VKKLAVEVGNPHVVWSASEDGTLRQHDF-RQGSSCPPAGSSHQ 191 (751)
Q Consensus 116 Dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~---V~~l~~sp~~~~~l~s~s~Dg~I~iwDl-r~~~~~~~~~~~~~ 191 (751)
|.-|++||.-++..++ ......|.+. ..+++|+|+ +..| -++...+|++||+ |.+..+.....
T Consensus 132 ~~PIh~wdaftG~lra--------Sy~~ydh~de~taAhsL~Fs~D-Geql-faGykrcirvFdt~RpGr~c~vy~t--- 198 (406)
T KOG2919|consen 132 DQPIHLWDAFTGKLRA--------SYRAYDHQDEYTAAHSLQFSPD-GEQL-FAGYKRCIRVFDTSRPGRDCPVYTT--- 198 (406)
T ss_pred cCceeeeecccccccc--------chhhhhhHHhhhhheeEEecCC-CCeE-eecccceEEEeeccCCCCCCcchhh---
Confidence 9999999999764332 2222234433 357999995 4555 3677799999999 77665422110
Q ss_pred ccceEEEecccCceecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCccccCCCCCCCCccccccccc
Q 004477 192 ECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMH 271 (751)
Q Consensus 192 ~~~~~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (751)
+ .....+...-+.+++|+|.+...+++|+....+-||.-....++..+
T Consensus 199 -----~----------~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~ll----------------- 246 (406)
T KOG2919|consen 199 -----V----------TKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLL----------------- 246 (406)
T ss_pred -----h----------hcccccccceeeeeeccCCCCcceeeecccceeeeEecCCCCceeee-----------------
Confidence 0 00112245678899999998889999999999999887666554332
Q ss_pred cccCCccccceEEEEEcCCCCEEEEEeC-CCcEEEEECCC
Q 004477 272 LSEHGRSSLHLTHVTFSPNGEEVLLSYS-GEHVYLMDVNH 310 (751)
Q Consensus 272 ~~~~g~~~~~vt~v~fspdg~~Ll~~s~-d~~I~lwdl~~ 310 (751)
.||.+ .||.+.|.++|+.|++|.. |..|..||++.
T Consensus 247 ---ggh~g-GvThL~~~edGn~lfsGaRk~dkIl~WDiR~ 282 (406)
T KOG2919|consen 247 ---GGHGG-GVTHLQWCEDGNKLFSGARKDDKILCWDIRY 282 (406)
T ss_pred ---cccCC-CeeeEEeccCcCeecccccCCCeEEEEeehh
Confidence 34555 5999999999999999987 88999999988
No 128
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.83 E-value=2e-18 Score=190.18 Aligned_cols=209 Identities=13% Similarity=0.148 Sum_probs=163.7
Q ss_pred ccCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCC-eEEEEecccCCcceEEEEEecCCCCcEEEEEECCCcEEEEECC
Q 004477 47 EGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSR-KLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLS 125 (751)
Q Consensus 47 ~gH~~~V~~l~~s~dg~~LaSgs~Dg~I~IWd~~~~-~~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~Dg~V~vwd~~ 125 (751)
.+|++.-+.|+|.|+|+.|.+++.||.|++|+.... ....++ .-+...|.+++.. ..+|++|+.+++|.+|.+.
T Consensus 10 yaht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~ti-~~~g~~v~~ia~~----s~~f~~~s~~~tv~~y~fp 84 (933)
T KOG1274|consen 10 YAHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEPETI-DISGELVSSIACY----SNHFLTGSEQNTVLRYKFP 84 (933)
T ss_pred hhccCceEEEEEcCCCCEEEEecCCCceEEeecCCcccCCchh-hccCceeEEEeec----ccceEEeeccceEEEeeCC
Confidence 368899999999999999999999999999997655 444444 2377778887755 3589999999999999998
Q ss_pred CCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCCCCCCCCCCccceEEEecccCce
Q 004477 126 RFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAK 205 (751)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~ 205 (751)
.+.. -..+...+-++++++|+. ++.+++.||.|-.|++-++......
T Consensus 85 s~~~----------~~iL~Rftlp~r~~~v~g-~g~~iaagsdD~~vK~~~~~D~s~~---------------------- 131 (933)
T KOG1274|consen 85 SGEE----------DTILARFTLPIRDLAVSG-SGKMIAAGSDDTAVKLLNLDDSSQE---------------------- 131 (933)
T ss_pred CCCc----------cceeeeeeccceEEEEec-CCcEEEeecCceeEEEEeccccchh----------------------
Confidence 7532 233445577899999998 7799999999999999998876522
Q ss_pred ecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCccccCCCCCCCCccccccccccccCCcc-ccceEE
Q 004477 206 RSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRS-SLHLTH 284 (751)
Q Consensus 206 ~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~-~~~vt~ 284 (751)
....+|..+|.++.|+|. +++||+.+.||.|++||+..+.....+..-.+ + .... ...++.
T Consensus 132 ---~~lrgh~apVl~l~~~p~-~~fLAvss~dG~v~iw~~~~~~~~~tl~~v~k---~-----------n~~~~s~i~~~ 193 (933)
T KOG1274|consen 132 ---KVLRGHDAPVLQLSYDPK-GNFLAVSSCDGKVQIWDLQDGILSKTLTGVDK---D-----------NEFILSRICTR 193 (933)
T ss_pred ---eeecccCCceeeeeEcCC-CCEEEEEecCceEEEEEcccchhhhhcccCCc---c-----------ccccccceeee
Confidence 223458899999999994 79999999999999999998765443321100 0 0000 224788
Q ss_pred EEEcCCCCEEEEEeCCCcEEEEECCCC
Q 004477 285 VTFSPNGEEVLLSYSGEHVYLMDVNHA 311 (751)
Q Consensus 285 v~fspdg~~Ll~~s~d~~I~lwdl~~~ 311 (751)
++|+|+|..|++-..|+.|++|+..+.
T Consensus 194 ~aW~Pk~g~la~~~~d~~Vkvy~r~~w 220 (933)
T KOG1274|consen 194 LAWHPKGGTLAVPPVDNTVKVYSRKGW 220 (933)
T ss_pred eeecCCCCeEEeeccCCeEEEEccCCc
Confidence 999999999999999999999998773
No 129
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.83 E-value=8.8e-20 Score=177.71 Aligned_cols=234 Identities=16% Similarity=0.247 Sum_probs=175.4
Q ss_pred ccccEEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEec-ccCCcceEEEEEecCCCCcEEEEEECCCc
Q 004477 40 LSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIE-TGHSANVFCTKFVPETSDELVVSGAGDAE 118 (751)
Q Consensus 40 ~~~~~~L~gH~~~V~~l~~s~dg~~LaSgs~Dg~I~IWd~~~~~~~~~l~-~~h~~~V~~v~fsp~s~~~~l~sgs~Dg~ 118 (751)
.-++++|-.|.++|++|.|+|...+|+||+.|++|+++|+........++ .....+|.++.|+|. |.+|+.|..-.+
T Consensus 162 hPvIRTlYDH~devn~l~FHPre~ILiS~srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPs--GefllvgTdHp~ 239 (430)
T KOG0640|consen 162 HPVIRTLYDHVDEVNDLDFHPRETILISGSRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPS--GEFLLVGTDHPT 239 (430)
T ss_pred CceEeehhhccCcccceeecchhheEEeccCCCeEEEEecccHHHHHHHHHhhccceeeeEeecCC--CceEEEecCCCc
Confidence 45788999999999999999999999999999999999987543322221 134578999999999 899999999999
Q ss_pred EEEEECCCCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCCCCCCCCCCccceEEE
Q 004477 119 VRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILL 198 (751)
Q Consensus 119 V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~~~~~~~~~~~~l~ 198 (751)
+++||+.+.+. + .....-..|++.|+++.+++ .+.+.++++.||.|++||--.++++. .+-
T Consensus 240 ~rlYdv~T~Qc--f-----vsanPd~qht~ai~~V~Ys~-t~~lYvTaSkDG~IklwDGVS~rCv~-----------t~~ 300 (430)
T KOG0640|consen 240 LRLYDVNTYQC--F-----VSANPDDQHTGAITQVRYSS-TGSLYVTASKDGAIKLWDGVSNRCVR-----------TIG 300 (430)
T ss_pred eeEEeccceeE--e-----eecCcccccccceeEEEecC-CccEEEEeccCCcEEeeccccHHHHH-----------HHH
Confidence 99999997432 1 11223457999999999999 67899999999999999976665331 111
Q ss_pred ecccCceecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCccccCCCCCCCCcc--------------
Q 004477 199 DLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCV-------------- 264 (751)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~~~~~~~~~~~~~~-------------- 264 (751)
... ....|.+..|.. +++++++.+.|..|++|.+.++..+..+.+........
T Consensus 301 ~AH------------~gsevcSa~Ftk-n~kyiLsSG~DS~vkLWEi~t~R~l~~YtGAg~tgrq~~rtqAvFNhtEdyV 367 (430)
T KOG0640|consen 301 NAH------------GGSEVCSAVFTK-NGKYILSSGKDSTVKLWEISTGRMLKEYTGAGTTGRQKHRTQAVFNHTEDYV 367 (430)
T ss_pred hhc------------CCceeeeEEEcc-CCeEEeecCCcceeeeeeecCCceEEEEecCCcccchhhhhhhhhcCccceE
Confidence 111 235788889998 58999999999999999999988765543321111000
Q ss_pred -------cccc--------ccccccCCccccceEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 004477 265 -------NYFC--------PMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDV 308 (751)
Q Consensus 265 -------~~~~--------~~~~~~~g~~~~~vt~v~fspdg~~Ll~~s~d~~I~lwdl 308 (751)
..++ ...+...||.+ .+..+.-||.+.-+++++.|-.+++|--
T Consensus 368 l~pDEas~slcsWdaRtadr~~l~slgHn~-a~R~i~HSP~~p~FmTcsdD~raRFWyr 425 (430)
T KOG0640|consen 368 LFPDEASNSLCSWDARTADRVALLSLGHNG-AVRWIVHSPVEPAFMTCSDDFRARFWYR 425 (430)
T ss_pred EccccccCceeeccccchhhhhhcccCCCC-CceEEEeCCCCCceeeecccceeeeeee
Confidence 0000 01122235655 6899999999999999999999999953
No 130
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.83 E-value=9.5e-20 Score=182.10 Aligned_cols=231 Identities=18% Similarity=0.267 Sum_probs=169.5
Q ss_pred ccccccEEeccCCCcEEEEEECCCC-CEEEEEeCCCcEEEEeCCCCeEEE---EecccCCcceEEEEEecCCCCcEEEEE
Q 004477 38 RRLSQERELEGHQGCVNAISWNSKG-SLLISGSDDTHINVWSYSSRKLLH---SIETGHSANVFCTKFVPETSDELVVSG 113 (751)
Q Consensus 38 ~~~~~~~~L~gH~~~V~~l~~s~dg-~~LaSgs~Dg~I~IWd~~~~~~~~---~l~~~h~~~V~~v~fsp~s~~~~l~sg 113 (751)
...+++.++.+|++.=.+|+|||-. -.|+||..-+.|++|.+.++.-.. .+ .+|+..|-.++|+|.. ...|+||
T Consensus 199 s~~~Pl~t~~ghk~EGy~LdWSp~~~g~LlsGDc~~~I~lw~~~~g~W~vd~~Pf-~gH~~SVEDLqWSptE-~~vfaSc 276 (440)
T KOG0302|consen 199 SEFRPLFTFNGHKGEGYGLDWSPIKTGRLLSGDCVKGIHLWEPSTGSWKVDQRPF-TGHTKSVEDLQWSPTE-DGVFASC 276 (440)
T ss_pred cccCceEEecccCccceeeecccccccccccCccccceEeeeeccCceeecCccc-cccccchhhhccCCcc-CceEEee
Confidence 5567899999999999999999932 258899888999999998775332 24 6899999999999997 6899999
Q ss_pred ECCCcEEEEECCCCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCCCCCCCCCCcc
Q 004477 114 AGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQEC 193 (751)
Q Consensus 114 s~Dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~~~~~~~~~ 193 (751)
|.||+|+|||++.+.. ++....+.|..-|+.|.|+-..+ +|++|+.||+++|||+|.-+..
T Consensus 277 S~DgsIrIWDiRs~~~--------~~~~~~kAh~sDVNVISWnr~~~-lLasG~DdGt~~iwDLR~~~~~---------- 337 (440)
T KOG0302|consen 277 SCDGSIRIWDIRSGPK--------KAAVSTKAHNSDVNVISWNRREP-LLASGGDDGTLSIWDLRQFKSG---------- 337 (440)
T ss_pred ecCceEEEEEecCCCc--------cceeEeeccCCceeeEEccCCcc-eeeecCCCceEEEEEhhhccCC----------
Confidence 9999999999997533 22334488999999999998554 9999999999999999986532
Q ss_pred ceEEEecccCceecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCccccCCCCCCCCccccccccccc
Q 004477 194 RNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLS 273 (751)
Q Consensus 194 ~~~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (751)
..+..+..|..+|+++.|+|.+...|++++.|..|.|||+..-.-...... .....++...|.-+.
T Consensus 338 ------------~pVA~fk~Hk~pItsieW~p~e~s~iaasg~D~QitiWDlsvE~D~ee~~~--~a~~~L~dlPpQLLF 403 (440)
T KOG0302|consen 338 ------------QPVATFKYHKAPITSIEWHPHEDSVIAASGEDNQITIWDLSVEADEEEIDQ--EAAEGLQDLPPQLLF 403 (440)
T ss_pred ------------CcceeEEeccCCeeEEEeccccCceEEeccCCCcEEEEEeeccCChhhhcc--ccccchhcCCceeEE
Confidence 123344458899999999999889999999999999999975432110000 000112222232222
Q ss_pred cC-CccccceEEEEEcCCCC-EEEEEeCCCcEEEE
Q 004477 274 EH-GRSSLHLTHVTFSPNGE-EVLLSYSGEHVYLM 306 (751)
Q Consensus 274 ~~-g~~~~~vt~v~fspdg~-~Ll~~s~d~~I~lw 306 (751)
-+ |.. .+..+.|++.-. +|++.+.|| +.||
T Consensus 404 VHqGQk--e~KevhWH~QiPG~lvsTa~dG-fnVf 435 (440)
T KOG0302|consen 404 VHQGQK--EVKEVHWHRQIPGLLVSTAIDG-FNVF 435 (440)
T ss_pred Eecchh--HhhhheeccCCCCeEEEecccc-eeEE
Confidence 22 222 378899999765 444444554 4444
No 131
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.82 E-value=9.5e-19 Score=171.26 Aligned_cols=250 Identities=13% Similarity=0.193 Sum_probs=173.3
Q ss_pred cEEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCe-----EEE-Eecc--------------------------
Q 004477 43 ERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRK-----LLH-SIET-------------------------- 90 (751)
Q Consensus 43 ~~~L~gH~~~V~~l~~s~dg~~LaSgs~Dg~I~IWd~~~~~-----~~~-~l~~-------------------------- 90 (751)
..+|+||.+.|++|+|+.||++|||++.|++|+||++.+.. ++. .+..
T Consensus 79 ~~~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~FapDc~s~vv~~~~g~~l~ 158 (420)
T KOG2096|consen 79 VSVLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAPDCKSVVVSVKRGNKLC 158 (420)
T ss_pred hhhhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccccCCCceEEEECCCcceEEEEEccCCEEE
Confidence 45789999999999999999999999999999999986421 110 0100
Q ss_pred --------------------------cCCcceEEEEEecCCCCcEEEEEECCCcEEEEECCCCCCCCCCCCCCCCceeec
Q 004477 91 --------------------------GHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQ 144 (751)
Q Consensus 91 --------------------------~h~~~V~~v~fsp~s~~~~l~sgs~Dg~V~vwd~~~~~~~~~~~~~~~~~~~~~ 144 (751)
.|.-.|..+-...+ +.+|+|++.|..|.||++.. +.+..+.
T Consensus 159 vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~--~k~imsas~dt~i~lw~lkG-----------q~L~~id 225 (420)
T KOG2096|consen 159 VYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGN--AKYIMSASLDTKICLWDLKG-----------QLLQSID 225 (420)
T ss_pred EEEeeecccCCCCcccccccccccchhcccceEEEeecCC--ceEEEEecCCCcEEEEecCC-----------ceeeeec
Confidence 12222223222222 57899999999999999982 4466666
Q ss_pred ccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCCCCCCCCCCccceEEEecccCceecccCCCCCccceEEEEEe
Q 004477 145 CHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDIS 224 (751)
Q Consensus 145 ~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~i~~s 224 (751)
.....-+..+.+| +++++++++.---|++|.+--.+.- .......+....+|...|..++|+
T Consensus 226 tnq~~n~~aavSP-~GRFia~~gFTpDVkVwE~~f~kdG-----------------~fqev~rvf~LkGH~saV~~~aFs 287 (420)
T KOG2096|consen 226 TNQSSNYDAAVSP-DGRFIAVSGFTPDVKVWEPIFTKDG-----------------TFQEVKRVFSLKGHQSAVLAAAFS 287 (420)
T ss_pred cccccccceeeCC-CCcEEEEecCCCCceEEEEEeccCc-----------------chhhhhhhheeccchhheeeeeeC
Confidence 5566667789999 7899999999999999986433210 001122345566799999999999
Q ss_pred CCCCcEEEEEeCCCeEEEEeCCCCCCccccCCCCCCCCccccc-cccccccCCccccceEEEEEcCCCCEEEEEeCCCcE
Q 004477 225 STRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYF-CPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHV 303 (751)
Q Consensus 225 p~~~~~l~sgs~D~~IriwD~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~g~~~~~vt~v~fspdg~~Ll~~s~d~~I 303 (751)
+ +...+++.+.||.+||||+.-..... ..|..++.+ .|.+-.. . ....++.+|+|+.|+++. ...+
T Consensus 288 n-~S~r~vtvSkDG~wriwdtdVrY~~~------qDpk~Lk~g~~pl~aag----~-~p~RL~lsP~g~~lA~s~-gs~l 354 (420)
T KOG2096|consen 288 N-SSTRAVTVSKDGKWRIWDTDVRYEAG------QDPKILKEGSAPLHAAG----S-EPVRLELSPSGDSLAVSF-GSDL 354 (420)
T ss_pred C-CcceeEEEecCCcEEEeeccceEecC------CCchHhhcCCcchhhcC----C-CceEEEeCCCCcEEEeec-CCce
Confidence 9 48999999999999999986432111 112222222 2222222 1 234899999999777665 4589
Q ss_pred EEEECCCCCcc-eeeeecCCCceeEEeCCCCCCc
Q 004477 304 YLMDVNHAGGR-AMRYTVGDASKIMSFTPTLNGL 336 (751)
Q Consensus 304 ~lwdl~~~~~~-~~~~~~~~~~~~~~~sp~~~~~ 336 (751)
++|..++++.. .....++..+..++|+|+..-+
T Consensus 355 ~~~~se~g~~~~~~e~~h~~~Is~is~~~~g~~~ 388 (420)
T KOG2096|consen 355 KVFASEDGKDYPELEDIHSTTISSISYSSDGKYI 388 (420)
T ss_pred EEEEcccCccchhHHHhhcCceeeEEecCCCcEE
Confidence 99999887633 3344567788889999987654
No 132
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.82 E-value=1.1e-18 Score=179.40 Aligned_cols=196 Identities=15% Similarity=0.141 Sum_probs=152.7
Q ss_pred CEEEEEe-CCCcEEEEeCCCCeEEEEecccCCcceEEEEEecCCCCcEEEEEECCCcEEEEECCCCCCCCCCCCCCCCce
Q 004477 63 SLLISGS-DDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSA 141 (751)
Q Consensus 63 ~~LaSgs-~Dg~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~Dg~V~vwd~~~~~~~~~~~~~~~~~~ 141 (751)
.+++++. .-..|.+|.+......... .--.+.|.+++-+|. |.+|+.|...+.+++|.+.++ ..+.
T Consensus 51 ~yllsaq~~rp~l~vw~i~k~~~~~q~-~v~Pg~v~al~s~n~--G~~l~ag~i~g~lYlWelssG----------~LL~ 117 (476)
T KOG0646|consen 51 EYLLSAQLKRPLLHVWEILKKDQVVQY-IVLPGPVHALASSNL--GYFLLAGTISGNLYLWELSSG----------ILLN 117 (476)
T ss_pred hheeeecccCccccccccCchhhhhhh-cccccceeeeecCCC--ceEEEeecccCcEEEEEeccc----------cHHH
Confidence 4666665 3446889998755444422 345788999999999 889988889999999999976 6688
Q ss_pred eecccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCCCCCCCCCCccceEEEecccCceecccCCCCCccceEEE
Q 004477 142 LYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSC 221 (751)
Q Consensus 142 ~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~i 221 (751)
.+.+|-..|+++.|+- ++.+|+|||.||.|.+|++-.--. .........+..+..|..+|+++
T Consensus 118 v~~aHYQ~ITcL~fs~-dgs~iiTgskDg~V~vW~l~~lv~----------------a~~~~~~~p~~~f~~HtlsITDl 180 (476)
T KOG0646|consen 118 VLSAHYQSITCLKFSD-DGSHIITGSKDGAVLVWLLTDLVS----------------ADNDHSVKPLHIFSDHTLSITDL 180 (476)
T ss_pred HHHhhccceeEEEEeC-CCcEEEecCCCccEEEEEEEeecc----------------cccCCCccceeeeccCcceeEEE
Confidence 8999999999999998 678889999999999998754211 01111223344556689999999
Q ss_pred EEeCCC-CcEEEEEeCCCeEEEEeCCCCCCccccCCCCCCCCccccccccccccCCccccceEEEEEcCCCCEEEEEeCC
Q 004477 222 DISSTR-PHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSG 300 (751)
Q Consensus 222 ~~sp~~-~~~l~sgs~D~~IriwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~vt~v~fspdg~~Ll~~s~d 300 (751)
.+.+.+ ..++++++.|.++|+||+.++..+.++. ....+++++.+|-++.+++|+.+
T Consensus 181 ~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~----------------------fp~si~av~lDpae~~~yiGt~~ 238 (476)
T KOG0646|consen 181 QIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTIT----------------------FPSSIKAVALDPAERVVYIGTEE 238 (476)
T ss_pred EecCCCccceEEEecCCceEEEEEeccceeeEEEe----------------------cCCcceeEEEcccccEEEecCCc
Confidence 988732 3589999999999999999887554321 11258999999999999999999
Q ss_pred CcEEEEECCC
Q 004477 301 EHVYLMDVNH 310 (751)
Q Consensus 301 ~~I~lwdl~~ 310 (751)
|.|.+.++.+
T Consensus 239 G~I~~~~~~~ 248 (476)
T KOG0646|consen 239 GKIFQNLLFK 248 (476)
T ss_pred ceEEeeehhc
Confidence 9999999877
No 133
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.82 E-value=2.6e-18 Score=183.37 Aligned_cols=234 Identities=15% Similarity=0.228 Sum_probs=174.8
Q ss_pred ccccccchh-hhccccccEEeccCCCcEEEEEECCC-----------CCEEEEEeCCCcEEEEeCCCCeEEEE----ec-
Q 004477 27 NHSLQMHSS-LVRRLSQERELEGHQGCVNAISWNSK-----------GSLLISGSDDTHINVWSYSSRKLLHS----IE- 89 (751)
Q Consensus 27 ~~~l~~~~~-~i~~~~~~~~L~gH~~~V~~l~~s~d-----------g~~LaSgs~Dg~I~IWd~~~~~~~~~----l~- 89 (751)
++.|.+|+- .+.+....+.+-.|..|||.+.--|- ...++|||.|++|++||+..+..-.. +.
T Consensus 345 dhSlYvWDvrD~~kvgk~~s~lyHS~ciW~Ve~~p~nv~~~~~aclp~~cF~TCSsD~TIRlW~l~~ctnn~vyrRNils 424 (1080)
T KOG1408|consen 345 DHSLYVWDVRDVNKVGKCSSMLYHSACIWDVENLPCNVHSPTAACLPRGCFTTCSSDGTIRLWDLAFCTNNQVYRRNILS 424 (1080)
T ss_pred CceEEEEeccccccccceeeeeeccceeeeeccccccccCcccccCCccceeEecCCCcEEEeecccccccceeecccch
Confidence 678888875 67777777888889999999987661 23589999999999999875211100 00
Q ss_pred -------------------------------ccCCcceEEEEEecCCCCcEEEEEECCCcEEEEECCCCCCCCCCCCCCC
Q 004477 90 -------------------------------TGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAIT 138 (751)
Q Consensus 90 -------------------------------~~h~~~V~~v~fsp~s~~~~l~sgs~Dg~V~vwd~~~~~~~~~~~~~~~ 138 (751)
-+....|.+++.+|+ |++|++|..-|+++||++... +
T Consensus 425 ~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp~--gqhLAsGDr~GnlrVy~Lq~l----------~ 492 (1080)
T KOG1408|consen 425 ANLSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALAVSPD--GQHLASGDRGGNLRVYDLQEL----------E 492 (1080)
T ss_pred hhhhcCccccCchhhhhhccCCcccccchhhcCcccceEEEEECCC--cceecccCccCceEEEEehhh----------h
Confidence 123457899999999 899999999999999999864 4
Q ss_pred CceeecccCCceeEEEEecC--CCCEEEEEeCCCcEEEEecCCCCCCCCCCCCCCccceEEEecccCceecccCCCCCcc
Q 004477 139 PSALYQCHTRRVKKLAVEVG--NPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTL 216 (751)
Q Consensus 139 ~~~~~~~h~~~V~~l~~sp~--~~~~l~s~s~Dg~I~iwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 216 (751)
....+..|...|.|+.|+.. ..++|++++.|..|.+||+...-.+ +....+|..
T Consensus 493 ~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny~l------------------------~qtld~HSs 548 (1080)
T KOG1408|consen 493 YTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNYDL------------------------VQTLDGHSS 548 (1080)
T ss_pred hhhheecccceeEEEeecCchhhhHhhhhccCCceEEEEecccccch------------------------hhhhccccc
Confidence 56778899999999999842 2368999999999999998765422 334455888
Q ss_pred ceEEEEEeCCCC-cEEEEEeCCCeEEEEeCCCCCCccccCCCCCCCCccccccccccccCCccccceEEEEEcCCCCEEE
Q 004477 217 SLKSCDISSTRP-HLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVL 295 (751)
Q Consensus 217 ~v~~i~~sp~~~-~~l~sgs~D~~IriwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~vt~v~fspdg~~Ll 295 (751)
.|+++.|...+. ..+++++.|..|.+--.++... ...| +.+....++. .++.++..|..++++
T Consensus 549 sITsvKFa~~gln~~MiscGADksimFr~~qk~~~-------------g~~f-~r~t~t~~kt--TlYDm~Vdp~~k~v~ 612 (1080)
T KOG1408|consen 549 SITSVKFACNGLNRKMISCGADKSIMFRVNQKASS-------------GRLF-PRHTQTLSKT--TLYDMAVDPTSKLVV 612 (1080)
T ss_pred ceeEEEEeecCCceEEEeccCchhhheehhccccC-------------ceec-cccccccccc--eEEEeeeCCCcceEE
Confidence 999999987542 5788999998775432222110 1111 1122222333 489999999999999
Q ss_pred EEeCCCcEEEEECCCCC
Q 004477 296 LSYSGEHVYLMDVNHAG 312 (751)
Q Consensus 296 ~~s~d~~I~lwdl~~~~ 312 (751)
+++.|..|+|||+.+++
T Consensus 613 t~cQDrnirif~i~sgK 629 (1080)
T KOG1408|consen 613 TVCQDRNIRIFDIESGK 629 (1080)
T ss_pred EEecccceEEEeccccc
Confidence 99999999999999964
No 134
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.82 E-value=8.1e-18 Score=177.54 Aligned_cols=186 Identities=11% Similarity=0.163 Sum_probs=131.8
Q ss_pred CCEEEEEeCCCcEEEEeCCCCeEEEEecccCCcceEEEEEecCCCCcEE-EEEECCCcEEEEECCCCCCCCCCCCCCCCc
Q 004477 62 GSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELV-VSGAGDAEVRLFNLSRFSGRGLDDNAITPS 140 (751)
Q Consensus 62 g~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~s~~~~l-~sgs~Dg~V~vwd~~~~~~~~~~~~~~~~~ 140 (751)
+.+++|++.|+.|++||+.+++.+..+ ..| ..+.+++|+|+ +..+ ++++.++.|++||+..+ +.+
T Consensus 1 ~~~~~s~~~d~~v~~~d~~t~~~~~~~-~~~-~~~~~l~~~~d--g~~l~~~~~~~~~v~~~d~~~~----------~~~ 66 (300)
T TIGR03866 1 EKAYVSNEKDNTISVIDTATLEVTRTF-PVG-QRPRGITLSKD--GKLLYVCASDSDTIQVIDLATG----------EVI 66 (300)
T ss_pred CcEEEEecCCCEEEEEECCCCceEEEE-ECC-CCCCceEECCC--CCEEEEEECCCCeEEEEECCCC----------cEE
Confidence 457899999999999999999888887 444 34778999999 6655 67788999999999864 224
Q ss_pred eeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCCCCCCCCCCccceEEEecccCceecccCCCCCccceEE
Q 004477 141 ALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKS 220 (751)
Q Consensus 141 ~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~ 220 (751)
..+..+.. +..++|+|++..++++++.|+.|++||+++.+.. .... ....+.+
T Consensus 67 ~~~~~~~~-~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~--------------~~~~------------~~~~~~~ 119 (300)
T TIGR03866 67 GTLPSGPD-PELFALHPNGKILYIANEDDNLVTVIDIETRKVL--------------AEIP------------VGVEPEG 119 (300)
T ss_pred EeccCCCC-ccEEEECCCCCEEEEEcCCCCeEEEEECCCCeEE--------------eEee------------CCCCcce
Confidence 44444433 5678999955445566677999999999875421 0000 1123567
Q ss_pred EEEeCCCCcEEEEEeCCC-eEEEEeCCCCCCccccCCCCCCCCccccccccccccCCccccceEEEEEcCCCCEEEEEe-
Q 004477 221 CDISSTRPHLLLVGGSDA-FARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSY- 298 (751)
Q Consensus 221 i~~sp~~~~~l~sgs~D~-~IriwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~vt~v~fspdg~~Ll~~s- 298 (751)
++|+|+ +.++++++.++ .+.+||.++.+..... + .+ ..+.+++|+|+|++|++++
T Consensus 120 ~~~~~d-g~~l~~~~~~~~~~~~~d~~~~~~~~~~--------------~-----~~---~~~~~~~~s~dg~~l~~~~~ 176 (300)
T TIGR03866 120 MAVSPD-GKIVVNTSETTNMAHFIDTKTYEIVDNV--------------L-----VD---QRPRFAEFTADGKELWVSSE 176 (300)
T ss_pred EEECCC-CCEEEEEecCCCeEEEEeCCCCeEEEEE--------------E-----cC---CCccEEEECCCCCEEEEEcC
Confidence 999994 78888887764 5778898765422110 0 00 1256789999999987665
Q ss_pred CCCcEEEEECCCC
Q 004477 299 SGEHVYLMDVNHA 311 (751)
Q Consensus 299 ~d~~I~lwdl~~~ 311 (751)
.++.|++||+.++
T Consensus 177 ~~~~v~i~d~~~~ 189 (300)
T TIGR03866 177 IGGTVSVIDVATR 189 (300)
T ss_pred CCCEEEEEEcCcc
Confidence 5899999999874
No 135
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.81 E-value=2.8e-18 Score=168.16 Aligned_cols=158 Identities=16% Similarity=0.226 Sum_probs=125.0
Q ss_pred ccCCcceEEEEEecCCCCcEEEEEECCCcEEEEECCCCCCCCCCCCCCCCceeecccCCceeEEEEecCCC-CEEEEEeC
Q 004477 90 TGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNP-HVVWSASE 168 (751)
Q Consensus 90 ~~h~~~V~~v~fsp~s~~~~l~sgs~Dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~-~~l~s~s~ 168 (751)
..|.+.|++|+.+ +.++||||.|-+|+|||+... ..+..+..|.+.|+++.|.+.-. ..|++|++
T Consensus 40 ~aH~~sitavAVs----~~~~aSGssDetI~IYDm~k~----------~qlg~ll~HagsitaL~F~~~~S~shLlS~sd 105 (362)
T KOG0294|consen 40 SAHAGSITALAVS----GPYVASGSSDETIHIYDMRKR----------KQLGILLSHAGSITALKFYPPLSKSHLLSGSD 105 (362)
T ss_pred cccccceeEEEec----ceeEeccCCCCcEEEEeccch----------hhhcceeccccceEEEEecCCcchhheeeecC
Confidence 6899999999987 689999999999999999975 34667788999999999987322 26779999
Q ss_pred CCcEEEEecCCCCCCCCCCCCCCccceEEEecccCceecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCC
Q 004477 169 DGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRML 248 (751)
Q Consensus 169 Dg~I~iwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~ 248 (751)
||.|.+|+...-.. +.....|...|+.++++|. +++.++.+.|+.+|+|++-.+
T Consensus 106 DG~i~iw~~~~W~~-------------------------~~slK~H~~~Vt~lsiHPS-~KLALsVg~D~~lr~WNLV~G 159 (362)
T KOG0294|consen 106 DGHIIIWRVGSWEL-------------------------LKSLKAHKGQVTDLSIHPS-GKLALSVGGDQVLRTWNLVRG 159 (362)
T ss_pred CCcEEEEEcCCeEE-------------------------eeeecccccccceeEecCC-CceEEEEcCCceeeeehhhcC
Confidence 99999999876532 2233447778999999995 789999999999999999776
Q ss_pred CCccccCCCCCCCCccccccccccccCCccccceEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 004477 249 PPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNH 310 (751)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~vt~v~fspdg~~Ll~~s~d~~I~lwdl~~ 310 (751)
+.-..+. + ++ ..+.|.|+|.|.++++++.+ .|-+|.+.+
T Consensus 160 r~a~v~~----------------L---~~---~at~v~w~~~Gd~F~v~~~~-~i~i~q~d~ 198 (362)
T KOG0294|consen 160 RVAFVLN----------------L---KN---KATLVSWSPQGDHFVVSGRN-KIDIYQLDN 198 (362)
T ss_pred ccceeec----------------c---CC---cceeeEEcCCCCEEEEEecc-EEEEEeccc
Confidence 5321110 0 11 24569999999998888765 788888777
No 136
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.81 E-value=3.9e-20 Score=198.30 Aligned_cols=235 Identities=16% Similarity=0.252 Sum_probs=189.4
Q ss_pred EEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEecccCCcceEEEEEecCCCCcEEEEEECCCcEEEEE
Q 004477 44 RELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFN 123 (751)
Q Consensus 44 ~~L~gH~~~V~~l~~s~dg~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~Dg~V~vwd 123 (751)
+++..|...|.|+..-..++.+++|+.|..+-+|.+.....+..+ .+|..+|-||.|.+. ..+|++|+.+|+|++||
T Consensus 22 ~~~~~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~~i~S~-~~hespIeSl~f~~~--E~LlaagsasgtiK~wD 98 (825)
T KOG0267|consen 22 REFVAHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKPNAITSL-TGHESPIESLTFDTS--ERLLAAGSASGTIKVWD 98 (825)
T ss_pred hhhhhhhhhhceeeeeccceeeccCCCceeeccccccCCchhhee-eccCCcceeeecCcc--hhhhcccccCCceeeee
Confidence 456679999999999778999999999999999998877777777 899999999999999 78999999999999999
Q ss_pred CCCCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCCCCCCCCCCccceEEEecccC
Q 004477 124 LSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCG 203 (751)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~~~~~~~~~~~~l~~~~~~ 203 (751)
+... +.++++.||...+.++.|+| -+.++++|+.|+-+++||+|...+.
T Consensus 99 leeA----------k~vrtLtgh~~~~~sv~f~P-~~~~~a~gStdtd~~iwD~Rk~Gc~-------------------- 147 (825)
T KOG0267|consen 99 LEEA----------KIVRTLTGHLLNITSVDFHP-YGEFFASGSTDTDLKIWDIRKKGCS-------------------- 147 (825)
T ss_pred hhhh----------hhhhhhhccccCcceeeecc-ceEEeccccccccceehhhhccCce--------------------
Confidence 9964 55789999999999999999 5678899999999999999964321
Q ss_pred ceecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCccccCCCCCCCCccccccccccccCCccccceE
Q 004477 204 AKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLT 283 (751)
Q Consensus 204 ~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~vt 283 (751)
....+|...|.++.|+| +++++++|+.|..++|||...++....+ .+|.. .+.
T Consensus 148 -----~~~~s~~~vv~~l~lsP-~Gr~v~~g~ed~tvki~d~~agk~~~ef--------------------~~~e~-~v~ 200 (825)
T KOG0267|consen 148 -----HTYKSHTRVVDVLRLSP-DGRWVASGGEDNTVKIWDLTAGKLSKEF--------------------KSHEG-KVQ 200 (825)
T ss_pred -----eeecCCcceeEEEeecC-CCceeeccCCcceeeeeccccccccccc--------------------ccccc-ccc
Confidence 12233667789999999 5899999999999999999877654433 22333 588
Q ss_pred EEEEcCCCCEEEEEeCCCcEEEEECCCCCcceeeeecCCCceeEEeCCCCCCcccC
Q 004477 284 HVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVGDASKIMSFTPTLNGLELQ 339 (751)
Q Consensus 284 ~v~fspdg~~Ll~~s~d~~I~lwdl~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~ 339 (751)
++.|+|..-.+..|+.|++|++||+++-......-.....+....|+|+.......
T Consensus 201 sle~hp~e~Lla~Gs~d~tv~f~dletfe~I~s~~~~~~~v~~~~fn~~~~~~~~G 256 (825)
T KOG0267|consen 201 SLEFHPLEVLLAPGSSDRTVRFWDLETFEVISSGKPETDGVRSLAFNPDGKIVLSG 256 (825)
T ss_pred ccccCchhhhhccCCCCceeeeeccceeEEeeccCCccCCceeeeecCCceeeecC
Confidence 89999999999999999999999999622111111123456667788876554433
No 137
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.81 E-value=1.1e-17 Score=172.99 Aligned_cols=233 Identities=17% Similarity=0.256 Sum_probs=172.0
Q ss_pred EEeccCC-CcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEecccCCcceEEEEEecCCCCcEEEEEECCCcEEEE
Q 004477 44 RELEGHQ-GCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLF 122 (751)
Q Consensus 44 ~~L~gH~-~~V~~l~~s~dg~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~Dg~V~vw 122 (751)
..++++. .-|.|++|.++|. ++||..+|+|.||+..+.+..++.. .|.+.|+++....+ | .|+||+.|+.|..|
T Consensus 239 ~~fek~ekk~Vl~v~F~engd-viTgDS~G~i~Iw~~~~~~~~k~~~-aH~ggv~~L~~lr~--G-tllSGgKDRki~~W 313 (626)
T KOG2106|consen 239 GIFEKREKKFVLCVTFLENGD-VITGDSGGNILIWSKGTNRISKQVH-AHDGGVFSLCMLRD--G-TLLSGGKDRKIILW 313 (626)
T ss_pred eccccccceEEEEEEEcCCCC-EEeecCCceEEEEeCCCceEEeEee-ecCCceEEEEEecC--c-cEeecCccceEEec
Confidence 3445543 5799999999998 7799999999999998888888874 99999999999988 4 56679999999999
Q ss_pred ECCCCCCCCCCC------------------------------CCCCCceeecccCCceeEEEEecCCCCEEEEEeCCCcE
Q 004477 123 NLSRFSGRGLDD------------------------------NAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTL 172 (751)
Q Consensus 123 d~~~~~~~~~~~------------------------------~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I 172 (751)
|-.....+.... .+.....+..+|.+....++.+| ...+|++++.|+.+
T Consensus 314 d~~y~k~r~~elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~hp-s~~q~~T~gqdk~v 392 (626)
T KOG2106|consen 314 DDNYRKLRETELPEQFGPIRTVAEGKGDILVGTTRNFILQGTLENGFTLTVQGHGDELWGLATHP-SKNQLLTCGQDKHV 392 (626)
T ss_pred cccccccccccCchhcCCeeEEecCCCcEEEeeccceEEEeeecCCceEEEEecccceeeEEcCC-ChhheeeccCcceE
Confidence 944322111100 00111234467899999999999 56788899999999
Q ss_pred EEEecCCCCCCCCCCCCCCccceEEEecccCceecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCcc
Q 004477 173 RQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLT 252 (751)
Q Consensus 173 ~iwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~~ 252 (751)
++|+ ..+ ..|.-. -..++.|++|+|. + .+++|...|...+.|..+...+.
T Consensus 393 ~lW~--~~k--------------~~wt~~------------~~d~~~~~~fhps-g-~va~Gt~~G~w~V~d~e~~~lv~ 442 (626)
T KOG2106|consen 393 RLWN--DHK--------------LEWTKI------------IEDPAECADFHPS-G-VVAVGTATGRWFVLDTETQDLVT 442 (626)
T ss_pred EEcc--CCc--------------eeEEEE------------ecCceeEeeccCc-c-eEEEeeccceEEEEecccceeEE
Confidence 9999 222 122211 2457889999996 4 99999999999999998744322
Q ss_pred ccCCCCCCCCccccccccccccCCccccceEEEEEcCCCCEEEEEeCCCcEEEEECCCCCcceeee--ecCCCceeEEeC
Q 004477 253 SCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRY--TVGDASKIMSFT 330 (751)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~vt~v~fspdg~~Ll~~s~d~~I~lwdl~~~~~~~~~~--~~~~~~~~~~~s 330 (751)
. |. . +.+++.++|+|+|.+|++|+.|+.||||-+...+...... .++.++..+.|+
T Consensus 443 ~-----------------~~----d-~~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~~g~~y~r~~k~~gs~ithLDwS 500 (626)
T KOG2106|consen 443 I-----------------HT----D-NEQLSVVRYSPDGAFLAVGSHDNHIYIYRVSANGRKYSRVGKCSGSPITHLDWS 500 (626)
T ss_pred E-----------------Ee----c-CCceEEEEEcCCCCEEEEecCCCeEEEEEECCCCcEEEEeeeecCceeEEeeec
Confidence 1 11 1 2369999999999999999999999999998865443333 234556666677
Q ss_pred CCCC
Q 004477 331 PTLN 334 (751)
Q Consensus 331 p~~~ 334 (751)
++.+
T Consensus 501 ~Ds~ 504 (626)
T KOG2106|consen 501 SDSQ 504 (626)
T ss_pred CCCc
Confidence 6654
No 138
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.81 E-value=5.3e-19 Score=188.64 Aligned_cols=257 Identities=14% Similarity=0.188 Sum_probs=205.6
Q ss_pred cCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEecccCCcceEEEEEecC-CCCcEEEEEECCCcEEEEECCC
Q 004477 48 GHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPE-TSDELVVSGAGDAEVRLFNLSR 126 (751)
Q Consensus 48 gH~~~V~~l~~s~dg~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~-s~~~~l~sgs~Dg~V~vwd~~~ 126 (751)
+-.-.|.+|+.+|+|++||+|..-|+|+||++..-.....+ ..|...|.|+.|+.. ...++|++++.|..|.|+|+..
T Consensus 457 d~r~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~l~~~~~~-eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~r 535 (1080)
T KOG1408|consen 457 DSRFGFRALAVSPDGQHLASGDRGGNLRVYDLQELEYTCFM-EAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKR 535 (1080)
T ss_pred CcccceEEEEECCCcceecccCccCceEEEEehhhhhhhhe-ecccceeEEEeecCchhhhHhhhhccCCceEEEEeccc
Confidence 34567999999999999999999999999999988877777 799999999999843 3347899999999999999985
Q ss_pred CCCCCCCCCCCCCceeecccCCceeEEEEecCCC-CEEEEEeCCCcEEEEecCCCCCCCCCCCCCCccceEEEecccCce
Q 004477 127 FSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNP-HVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAK 205 (751)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~-~~l~s~s~Dg~I~iwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~ 205 (751)
. +.+++++.+|...|+++.|...+. ..++++|.|+.|. |+....... ..++. +
T Consensus 536 n---------y~l~qtld~HSssITsvKFa~~gln~~MiscGADksim-Fr~~qk~~~-----------g~~f~-r---- 589 (1080)
T KOG1408|consen 536 N---------YDLVQTLDGHSSSITSVKFACNGLNRKMISCGADKSIM-FRVNQKASS-----------GRLFP-R---- 589 (1080)
T ss_pred c---------cchhhhhcccccceeEEEEeecCCceEEEeccCchhhh-eehhccccC-----------ceecc-c----
Confidence 3 467899999999999999987443 4688999999885 443331100 00000 0
Q ss_pred ecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCccccCCCCCCCCccccccccccccCCccccceEEE
Q 004477 206 RSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHV 285 (751)
Q Consensus 206 ~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~vt~v 285 (751)
.........++.+++.|. ..++++++.|..|||||+.+++....+.+. ++|.+ ..-.+
T Consensus 590 ---~t~t~~ktTlYDm~Vdp~-~k~v~t~cQDrnirif~i~sgKq~k~FKgs-----------------~~~eG-~lIKv 647 (1080)
T KOG1408|consen 590 ---HTQTLSKTTLYDMAVDPT-SKLVVTVCQDRNIRIFDIESGKQVKSFKGS-----------------RDHEG-DLIKV 647 (1080)
T ss_pred ---cccccccceEEEeeeCCC-cceEEEEecccceEEEeccccceeeeeccc-----------------ccCCC-ceEEE
Confidence 000113456889999995 789999999999999999998765554321 33433 46678
Q ss_pred EEcCCCCEEEEEeCCCcEEEEECCCCCcceeeeecCCCceeEEeCCCCCCcccCCCcccccccccccc
Q 004477 286 TFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVGDASKIMSFTPTLNGLELQPPIHDFLQTNIRVR 353 (751)
Q Consensus 286 ~fspdg~~Ll~~s~d~~I~lwdl~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~~~~~~~~~~~~~~ 353 (751)
...|.|.||++++.|.++.+||+.++......++|.+.+..+.|.++-+.+-....++..+....+..
T Consensus 648 ~lDPSgiY~atScsdktl~~~Df~sgEcvA~m~GHsE~VTG~kF~nDCkHlISvsgDgCIFvW~lp~~ 715 (1080)
T KOG1408|consen 648 ILDPSGIYLATSCSDKTLCFVDFVSGECVAQMTGHSEAVTGVKFLNDCKHLISVSGDGCIFVWKLPLT 715 (1080)
T ss_pred EECCCccEEEEeecCCceEEEEeccchhhhhhcCcchheeeeeecccchhheeecCCceEEEEECchh
Confidence 99999999999999999999999999999999999999999999999999888888888887655543
No 139
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.80 E-value=9.2e-18 Score=164.44 Aligned_cols=155 Identities=15% Similarity=0.234 Sum_probs=119.9
Q ss_pred ccCCcceEEEEEecCCCCcEEEEEECCCcEEEEECCCCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCC
Q 004477 90 TGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASED 169 (751)
Q Consensus 90 ~~h~~~V~~v~fsp~s~~~~l~sgs~Dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~D 169 (751)
..-...|.+|+|+|. .+.|+.++.||++++||+...+ +...-.|..++.+++|.+ ...+++|+.|
T Consensus 10 npP~d~IS~v~f~~~--~~~LLvssWDgslrlYdv~~~~-----------l~~~~~~~~plL~c~F~d--~~~~~~G~~d 74 (323)
T KOG1036|consen 10 NPPEDGISSVKFSPS--SSDLLVSSWDGSLRLYDVPANS-----------LKLKFKHGAPLLDCAFAD--ESTIVTGGLD 74 (323)
T ss_pred CCChhceeeEEEcCc--CCcEEEEeccCcEEEEeccchh-----------hhhheecCCceeeeeccC--CceEEEeccC
Confidence 445688999999987 4667777799999999998642 333345999999999986 3577899999
Q ss_pred CcEEEEecCCCCCCCCCCCCCCccceEEEecccCceecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCC
Q 004477 170 GTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLP 249 (751)
Q Consensus 170 g~I~iwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~ 249 (751)
|.|+.+|+.++... ....|...+.||..++. ...+++|+.|++|++||.|...
T Consensus 75 g~vr~~Dln~~~~~--------------------------~igth~~~i~ci~~~~~-~~~vIsgsWD~~ik~wD~R~~~ 127 (323)
T KOG1036|consen 75 GQVRRYDLNTGNED--------------------------QIGTHDEGIRCIEYSYE-VGCVISGSWDKTIKFWDPRNKV 127 (323)
T ss_pred ceEEEEEecCCcce--------------------------eeccCCCceEEEEeecc-CCeEEEcccCccEEEEeccccc
Confidence 99999999987632 11237788999999984 6799999999999999999633
Q ss_pred CccccCCCCCCCCccccccccccccCCccccceEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 004477 250 PLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNH 310 (751)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~vt~v~fspdg~~Ll~~s~d~~I~lwdl~~ 310 (751)
....+. . ...|.++.. .|+.|++|+.+..|.+||+.+
T Consensus 128 ~~~~~d-------------------~---~kkVy~~~v--~g~~LvVg~~~r~v~iyDLRn 164 (323)
T KOG1036|consen 128 VVGTFD-------------------Q---GKKVYCMDV--SGNRLVVGTSDRKVLIYDLRN 164 (323)
T ss_pred cccccc-------------------c---CceEEEEec--cCCEEEEeecCceEEEEEccc
Confidence 222111 0 113655544 577899999999999999998
No 140
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.80 E-value=2e-18 Score=177.80 Aligned_cols=212 Identities=18% Similarity=0.288 Sum_probs=167.4
Q ss_pred cccccEEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCC---eEEEEec-ccCCcceEEEEEecCCCCcEEEEEE
Q 004477 39 RLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSR---KLLHSIE-TGHSANVFCTKFVPETSDELVVSGA 114 (751)
Q Consensus 39 ~~~~~~~L~gH~~~V~~l~~s~dg~~LaSgs~Dg~I~IWd~~~~---~~~~~l~-~~h~~~V~~v~fsp~s~~~~l~sgs 114 (751)
.++.+++|. |..-|.++..|...+++.||+. |.|+|||+... ..+..+. ..-...|.+++.+|+ |+.|++|+
T Consensus 409 harq~~tL~-HGEvVcAvtIS~~trhVyTgGk-gcVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~pd--grtLivGG 484 (705)
T KOG0639|consen 409 HARQINTLA-HGEVVCAVTISNPTRHVYTGGK-GCVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLLPD--GRTLIVGG 484 (705)
T ss_pred hHHhhhhhc-cCcEEEEEEecCCcceeEecCC-CeEEEeeccCCCCCCccccccccCcccceeeeEecCC--CceEEecc
Confidence 345566664 8899999999999999999976 78999998632 2333331 124577999999999 89999999
Q ss_pred CCCcEEEEECCCCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCCCCCCCCCCccc
Q 004477 115 GDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECR 194 (751)
Q Consensus 115 ~Dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~~~~~~~~~~ 194 (751)
.-.++.|||+...+.+. ...+.+-.-..+.++.+| +.++..+|..||.|+|||++....
T Consensus 485 eastlsiWDLAapTpri--------kaeltssapaCyALa~sp-DakvcFsccsdGnI~vwDLhnq~~------------ 543 (705)
T KOG0639|consen 485 EASTLSIWDLAAPTPRI--------KAELTSSAPACYALAISP-DAKVCFSCCSDGNIAVWDLHNQTL------------ 543 (705)
T ss_pred ccceeeeeeccCCCcch--------hhhcCCcchhhhhhhcCC-ccceeeeeccCCcEEEEEccccee------------
Confidence 99999999999754321 334444455678899999 668888999999999999998652
Q ss_pred eEEEecccCceecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCccccCCCCCCCCcccccccccccc
Q 004477 195 NILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSE 274 (751)
Q Consensus 195 ~~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (751)
+..+++|...+.||.+++ ++..|-+|+-|++||.||+|.+..+...
T Consensus 544 -------------VrqfqGhtDGascIdis~-dGtklWTGGlDntvRcWDlregrqlqqh-------------------- 589 (705)
T KOG0639|consen 544 -------------VRQFQGHTDGASCIDISK-DGTKLWTGGLDNTVRCWDLREGRQLQQH-------------------- 589 (705)
T ss_pred -------------eecccCCCCCceeEEecC-CCceeecCCCccceeehhhhhhhhhhhh--------------------
Confidence 455677899999999999 5899999999999999999987644321
Q ss_pred CCccccceEEEEEcCCCCEEEEEeCCCcEEEEECCCC
Q 004477 275 HGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHA 311 (751)
Q Consensus 275 ~g~~~~~vt~v~fspdg~~Ll~~s~d~~I~lwdl~~~ 311 (751)
...+ .|.++..+|++.+|++|..++.+.|-.....
T Consensus 590 -dF~S-QIfSLg~cP~~dWlavGMens~vevlh~skp 624 (705)
T KOG0639|consen 590 -DFSS-QIFSLGYCPTGDWLAVGMENSNVEVLHTSKP 624 (705)
T ss_pred -hhhh-hheecccCCCccceeeecccCcEEEEecCCc
Confidence 1112 4899999999999999999999988877663
No 141
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.79 E-value=3e-18 Score=175.52 Aligned_cols=218 Identities=17% Similarity=0.266 Sum_probs=166.5
Q ss_pred ccccEEeccCCCcEEEEEECCCC--CEEEEEeCCCcEEEEeCCCC----eEEEEecccCCcceEEEEEecCCCCcEEEEE
Q 004477 40 LSQERELEGHQGCVNAISWNSKG--SLLISGSDDTHINVWSYSSR----KLLHSIETGHSANVFCTKFVPETSDELVVSG 113 (751)
Q Consensus 40 ~~~~~~L~gH~~~V~~l~~s~dg--~~LaSgs~Dg~I~IWd~~~~----~~~~~l~~~h~~~V~~v~fsp~s~~~~l~sg 113 (751)
+....+.+-|.+.|.+++|+|.. +++|+|+.-|+|-+||+.+. ..+..+ ..|.++|.++.|+|.+ ...|++.
T Consensus 176 ~~~~~v~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f-~~hs~~Vs~l~F~P~n-~s~i~ss 253 (498)
T KOG4328|consen 176 YRILNVAKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLF-TPHSGPVSGLKFSPAN-TSQIYSS 253 (498)
T ss_pred ceecceeEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEe-ccCCccccceEecCCC-hhheeee
Confidence 34456677899999999999964 58999999999999999422 223344 7899999999999996 6889999
Q ss_pred ECCCcEEEEECCCCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCCCCCCCCCCcc
Q 004477 114 AGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQEC 193 (751)
Q Consensus 114 s~Dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~~~~~~~~~ 193 (751)
|.||+|++-|++.... +.+..+..-.....++.|+.+++.++ .+..=|.+.+||+|++...
T Consensus 254 SyDGtiR~~D~~~~i~--------e~v~s~~~d~~~fs~~d~~~e~~~vl-~~~~~G~f~~iD~R~~~s~---------- 314 (498)
T KOG4328|consen 254 SYDGTIRLQDFEGNIS--------EEVLSLDTDNIWFSSLDFSAESRSVL-FGDNVGNFNVIDLRTDGSE---------- 314 (498)
T ss_pred ccCceeeeeeecchhh--------HHHhhcCccceeeeeccccCCCccEE-EeecccceEEEEeecCCcc----------
Confidence 9999999999996432 23344444455677888888665544 6666669999999997632
Q ss_pred ceEEEecccCceecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCccccCCCCCCCCccccccccccc
Q 004477 194 RNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLS 273 (751)
Q Consensus 194 ~~~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (751)
.....-|...|.+++++|..+.+|++++.|++++|||+|.+....+ | .+.
T Consensus 315 --------------~~~~~lh~kKI~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~s---------------p-~ls 364 (498)
T KOG4328|consen 315 --------------YENLRLHKKKITSVALNPVCPWFLATASLDQTAKIWDLRQLRGKAS---------------P-FLS 364 (498)
T ss_pred --------------chhhhhhhcccceeecCCCCchheeecccCcceeeeehhhhcCCCC---------------c-cee
Confidence 0111125568999999999999999999999999999998754322 0 111
Q ss_pred cCCccccceEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 004477 274 EHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVN 309 (751)
Q Consensus 274 ~~g~~~~~vt~v~fspdg~~Ll~~s~d~~I~lwdl~ 309 (751)
...|.. .|.++.|||.|-.|++.+.|..|+|||..
T Consensus 365 t~~Hrr-sV~sAyFSPs~gtl~TT~~D~~IRv~dss 399 (498)
T KOG4328|consen 365 TLPHRR-SVNSAYFSPSGGTLLTTCQDNEIRVFDSS 399 (498)
T ss_pred cccccc-eeeeeEEcCCCCceEeeccCCceEEeecc
Confidence 122433 59999999998889999999999999985
No 142
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.79 E-value=2.1e-17 Score=160.34 Aligned_cols=180 Identities=19% Similarity=0.283 Sum_probs=147.6
Q ss_pred ccCCCcEEEEEECC-CCCEEEEEeCCCcEEEEeCCCCeEEEEecccCCcceEEEEEecCCC-CcEEEEEECCCcEEEEEC
Q 004477 47 EGHQGCVNAISWNS-KGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETS-DELVVSGAGDAEVRLFNL 124 (751)
Q Consensus 47 ~gH~~~V~~l~~s~-dg~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~s~-~~~l~sgs~Dg~V~vwd~ 124 (751)
.+|+-.|..+.|-| |.-.+.|+|-|.+++|||..+-+....| .-.+.|.+-+++|-.. -.+||+|..|-.|++-|+
T Consensus 98 ~~Hky~iss~~WyP~DtGmFtssSFDhtlKVWDtnTlQ~a~~F--~me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi 175 (397)
T KOG4283|consen 98 NGHKYAISSAIWYPIDTGMFTSSSFDHTLKVWDTNTLQEAVDF--KMEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDI 175 (397)
T ss_pred ccceeeeeeeEEeeecCceeecccccceEEEeecccceeeEEe--ecCceeehhhcChhhhcceEEEEecCCCcEEEEec
Confidence 57889999999999 5558899999999999999998887777 3567799999998642 247788888999999999
Q ss_pred CCCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCCCCCCCCCCccceEEEecccCc
Q 004477 125 SRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGA 204 (751)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~ 204 (751)
..+ ...+++.+|.+.|.++.|+|....+|++|+.||.||+||+|....| ..++-......
T Consensus 176 ~SG----------s~sH~LsGHr~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgc----------f~~lD~hn~k~ 235 (397)
T KOG4283|consen 176 ASG----------SFSHTLSGHRDGVLAVEWSPSSEWVLATGSADGAIRLWDIRRASGC----------FRVLDQHNTKR 235 (397)
T ss_pred cCC----------cceeeeccccCceEEEEeccCceeEEEecCCCceEEEEEeecccce----------eEEeecccCcc
Confidence 975 5589999999999999999988889999999999999999986533 22222222222
Q ss_pred eecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCC
Q 004477 205 KRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLP 249 (751)
Q Consensus 205 ~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~ 249 (751)
...+...+.|...|+.++|+. ++.++++++.|..+++|+..++.
T Consensus 236 ~p~~~~n~ah~gkvngla~tS-d~~~l~~~gtd~r~r~wn~~~G~ 279 (397)
T KOG4283|consen 236 PPILKTNTAHYGKVNGLAWTS-DARYLASCGTDDRIRVWNMESGR 279 (397)
T ss_pred Cccccccccccceeeeeeecc-cchhhhhccCccceEEeecccCc
Confidence 223344667889999999999 58999999999999999998775
No 143
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.79 E-value=3.1e-18 Score=172.21 Aligned_cols=230 Identities=17% Similarity=0.261 Sum_probs=166.1
Q ss_pred EeccCCCcEEEEEECC-CCCEEEEEeCCCcEEEEeCCCCe-------EEEEecccCCcceEEEEEecCCCCcEEEEEECC
Q 004477 45 ELEGHQGCVNAISWNS-KGSLLISGSDDTHINVWSYSSRK-------LLHSIETGHSANVFCTKFVPETSDELVVSGAGD 116 (751)
Q Consensus 45 ~L~gH~~~V~~l~~s~-dg~~LaSgs~Dg~I~IWd~~~~~-------~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~D 116 (751)
.+.||++.|..++|+| +...|||||.|.+|.||.+..+. .+..+ .||...|.-|+|+|.. .+.|+|++.|
T Consensus 76 ~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L-~gH~rrVg~V~wHPtA-~NVLlsag~D 153 (472)
T KOG0303|consen 76 LVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVEL-YGHQRRVGLVQWHPTA-PNVLLSAGSD 153 (472)
T ss_pred CccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEE-eecceeEEEEeecccc-hhhHhhccCC
Confidence 4689999999999999 56799999999999999986442 34455 7999999999999997 6899999999
Q ss_pred CcEEEEECCCCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCCCCCCCCCCccceE
Q 004477 117 AEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNI 196 (751)
Q Consensus 117 g~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~~~~~~~~~~~~ 196 (751)
.+|.+||+.++ +.+.++. |.+-|+++.|+. ++.+|++++.|+.|||||.|+++.....
T Consensus 154 n~v~iWnv~tg----------eali~l~-hpd~i~S~sfn~-dGs~l~TtckDKkvRv~dpr~~~~v~e~---------- 211 (472)
T KOG0303|consen 154 NTVSIWNVGTG----------EALITLD-HPDMVYSMSFNR-DGSLLCTTCKDKKVRVIDPRRGTVVSEG---------- 211 (472)
T ss_pred ceEEEEeccCC----------ceeeecC-CCCeEEEEEecc-CCceeeeecccceeEEEcCCCCcEeeec----------
Confidence 99999999976 3355566 999999999998 7789999999999999999998743211
Q ss_pred EEecccCceecccCCCCCcc-ceEEEEEeCCCCcEEEEE---eCCCeEEEEeCCCCCCccccCCCCCCCCcccccccccc
Q 004477 197 LLDLRCGAKRSLADPPKQTL-SLKSCDISSTRPHLLLVG---GSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHL 272 (751)
Q Consensus 197 l~~~~~~~~~~~~~~~~~~~-~v~~i~~sp~~~~~l~sg---s~D~~IriwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (751)
..|.+ .-..+.|-. ++.++.+| .++..+-|||..+++.-..+ +.+
T Consensus 212 ---------------~~heG~k~~Raifl~-~g~i~tTGfsr~seRq~aLwdp~nl~eP~~~----------~el----- 260 (472)
T KOG0303|consen 212 ---------------VAHEGAKPARAIFLA-SGKIFTTGFSRMSERQIALWDPNNLEEPIAL----------QEL----- 260 (472)
T ss_pred ---------------ccccCCCcceeEEec-cCceeeeccccccccceeccCcccccCccee----------EEe-----
Confidence 01111 112223333 34544444 25788999998876531111 100
Q ss_pred ccCCccccceEEEEEcCCCCEEEEEe-CCCcEEEEECCCCCcc---eeeeecCCCceeEEeCCCC
Q 004477 273 SEHGRSSLHLTHVTFSPNGEEVLLSY-SGEHVYLMDVNHAGGR---AMRYTVGDASKIMSFTPTL 333 (751)
Q Consensus 273 ~~~g~~~~~vt~v~fspdg~~Ll~~s-~d~~I~lwdl~~~~~~---~~~~~~~~~~~~~~~sp~~ 333 (751)
..+..|.---|.+|.+.|..++ +|+.|+.|.+.+.... .-.|...++.+.+.|-|..
T Consensus 261 ----DtSnGvl~PFyD~dt~ivYl~GKGD~~IRYyEit~d~P~~hyln~f~S~epQRG~g~mPKR 321 (472)
T KOG0303|consen 261 ----DTSNGVLLPFYDPDTSIVYLCGKGDSSIRYFEITNEPPFVHYLNTFSSKEPQRGMGFMPKR 321 (472)
T ss_pred ----ccCCceEEeeecCCCCEEEEEecCCcceEEEEecCCCceeEEecccccCCccccccccccc
Confidence 1112366667889988877655 5999999999985311 1223445666777777653
No 144
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.79 E-value=5e-17 Score=177.33 Aligned_cols=245 Identities=15% Similarity=0.171 Sum_probs=181.2
Q ss_pred ccccccchhhhccccccEEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEecccCCcceEEEEEecCCC
Q 004477 27 NHSLQMHSSLVRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETS 106 (751)
Q Consensus 27 ~~~l~~~~~~i~~~~~~~~L~gH~~~V~~l~~s~dg~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~s~ 106 (751)
+.++++|. +++.+.+++++++...|+++.=+|--..+|.|..+|+|.|++++.++.+.+|. .-.+.|++++|.-+.
T Consensus 181 ~G~lql~N--vrt~K~v~~f~~~~s~IT~ieqsPaLDVVaiG~~~G~ViifNlK~dkil~sFk-~d~g~VtslSFrtDG- 256 (910)
T KOG1539|consen 181 QGRLQLWN--VRTGKVVYTFQEFFSRITAIEQSPALDVVAIGLENGTVIIFNLKFDKILMSFK-QDWGRVTSLSFRTDG- 256 (910)
T ss_pred CCcEEEEE--eccCcEEEEecccccceeEeccCCcceEEEEeccCceEEEEEcccCcEEEEEE-ccccceeEEEeccCC-
Confidence 45566655 67778999999999999999999999999999999999999999999999993 225999999999884
Q ss_pred CcEEEEEECCCcEEEEECCCCCCCCCCCCCCCCce-eecccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCCCC
Q 004477 107 DELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSA-LYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPP 185 (751)
Q Consensus 107 ~~~l~sgs~Dg~V~vwd~~~~~~~~~~~~~~~~~~-~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~ 185 (751)
..++++|+..|.+-+||++.. +.+. ....|.+.|..+.|.| +..++++++.|..+++|=..++.
T Consensus 257 ~p~las~~~~G~m~~wDLe~k----------kl~~v~~nah~~sv~~~~fl~-~epVl~ta~~DnSlk~~vfD~~d---- 321 (910)
T KOG1539|consen 257 NPLLASGRSNGDMAFWDLEKK----------KLINVTRNAHYGSVTGATFLP-GEPVLVTAGADNSLKVWVFDSGD---- 321 (910)
T ss_pred CeeEEeccCCceEEEEEcCCC----------eeeeeeeccccCCcccceecC-CCceEeeccCCCceeEEEeeCCC----
Confidence 467888888899999999963 2233 3457999999999999 66899999999999999766554
Q ss_pred CCCCCCccceEEEecccCceecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCccccCCCCCCCC--c
Q 004477 186 AGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPP--C 263 (751)
Q Consensus 186 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~~~~~~~~~~~~--~ 263 (751)
|..+.+....+|..+..|+.|.-..++.+.+++.|++.+.+++.+...-.++.....+.. .
T Consensus 322 -----------------g~pR~LR~R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk 384 (910)
T KOG1539|consen 322 -----------------GVPRLLRSRGGHSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKK 384 (910)
T ss_pred -----------------CcchheeeccCCCCCchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhccccccccccc
Confidence 122334455668899999999977789999999999999999876543322222100000 0
Q ss_pred cccccccccccCCccccceEEEEEcC-----CCCEEEEEeCCCcEEEEECCCCC
Q 004477 264 VNYFCPMHLSEHGRSSLHLTHVTFSP-----NGEEVLLSYSGEHVYLMDVNHAG 312 (751)
Q Consensus 264 ~~~~~~~~~~~~g~~~~~vt~v~fsp-----dg~~Ll~~s~d~~I~lwdl~~~~ 312 (751)
+..+.... ..-.+|..++|.- ..+.+.+.-.+..++.|++.+..
T Consensus 385 ~~~~~~~~-----~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~ 433 (910)
T KOG1539|consen 385 VNVFSTEK-----LKLPPIVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKT 433 (910)
T ss_pred ccccchhh-----hcCCcceeeecccchhhhhcceeEEecCcceEEEEeccCcc
Confidence 00110000 0111466666654 23455566668899999999843
No 145
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.79 E-value=2.5e-18 Score=180.51 Aligned_cols=249 Identities=19% Similarity=0.295 Sum_probs=183.4
Q ss_pred hhccccccEEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCC--------CCeEEEEecccCCcceEEEEEecCCCC
Q 004477 36 LVRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYS--------SRKLLHSIETGHSANVFCTKFVPETSD 107 (751)
Q Consensus 36 ~i~~~~~~~~L~gH~~~V~~l~~s~dg~~LaSgs~Dg~I~IWd~~--------~~~~~~~l~~~h~~~V~~v~fsp~s~~ 107 (751)
+.++..+..+|..|.++|..++|.+....|++|+.||+|++|++. .-+++.+| .+|.++|.|++..++ +
T Consensus 280 ~~k~w~ik~tl~s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tf-raH~gPVl~v~v~~n--~ 356 (577)
T KOG0642|consen 280 FTKKWNIKFTLRSHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTF-RAHEGPVLCVVVPSN--G 356 (577)
T ss_pred hheecceeeeeecchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEE-ecccCceEEEEecCC--c
Confidence 566667777999999999999999999999999999999999983 23567788 899999999999999 8
Q ss_pred cEEEEEECCCcEEEEECCCCCCCCCCCCC-CCCceeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCCCCC
Q 004477 108 ELVVSGAGDAEVRLFNLSRFSGRGLDDNA-ITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPA 186 (751)
Q Consensus 108 ~~l~sgs~Dg~V~vwd~~~~~~~~~~~~~-~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~~ 186 (751)
..+++|+.||+|+.|++. ......+... ......+.||++.|+.+++++ ....|++|+.|||+|+|+.....+|...
T Consensus 357 ~~~ysgg~Dg~I~~w~~p-~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~-~~~~Llscs~DgTvr~w~~~~~~~~~f~ 434 (577)
T KOG0642|consen 357 EHCYSGGIDGTIRCWNLP-PNQDPDDSYDPSVLSGTLLGHTDAVWLLALSS-TKDRLLSCSSDGTVRLWEPTEESPCTFG 434 (577)
T ss_pred eEEEeeccCceeeeeccC-CCCCcccccCcchhccceeccccceeeeeecc-cccceeeecCCceEEeeccCCcCccccC
Confidence 999999999999999887 3332221111 133567889999999999998 5567889999999999998877663111
Q ss_pred CCCCC---------------------ccceEEEecccCceecccC-----CCCCccceEEEEEeCCCCcEEEEEeCCCeE
Q 004477 187 GSSHQ---------------------ECRNILLDLRCGAKRSLAD-----PPKQTLSLKSCDISSTRPHLLLVGGSDAFA 240 (751)
Q Consensus 187 ~~~~~---------------------~~~~~l~~~~~~~~~~~~~-----~~~~~~~v~~i~~sp~~~~~l~sgs~D~~I 240 (751)
..... .+...+.+...+....+.. .+.....+.-+.++|. ..+.+++..|+.|
T Consensus 435 ~~~e~g~Plsvd~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~-~~~~~~~hed~~I 513 (577)
T KOG0642|consen 435 EPKEHGYPLSVDRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPT-ADITFTAHEDRSI 513 (577)
T ss_pred CccccCCcceEeeccchhHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEecCC-CCeeEecccCCce
Confidence 10000 0011111111111111111 0112234667778884 6799999999999
Q ss_pred EEEeCCCCCCccccCCCCCCCCccccccccccccCCccccceEEEEEcCCCCEEEEEeCCCcEEEEECCCC
Q 004477 241 RLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHA 311 (751)
Q Consensus 241 riwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~vt~v~fspdg~~Ll~~s~d~~I~lwdl~~~ 311 (751)
+++|..+++++.+. ..|.. .++++++.|+|-+|++++.|+.|++|.+...
T Consensus 514 r~~dn~~~~~l~s~--------------------~a~~~-svtslai~~ng~~l~s~s~d~sv~l~kld~k 563 (577)
T KOG0642|consen 514 RFFDNKTGKILHSM--------------------VAHKD-SVTSLAIDPNGPYLMSGSHDGSVRLWKLDVK 563 (577)
T ss_pred ecccccccccchhe--------------------eeccc-eecceeecCCCceEEeecCCceeehhhccch
Confidence 99999988766543 12333 4999999999999999999999999998774
No 146
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.79 E-value=2.8e-18 Score=175.23 Aligned_cols=203 Identities=18% Similarity=0.282 Sum_probs=160.8
Q ss_pred EEEEEECC-------CCCEEEEEeCCCcEEEEeCCCCe---EEEEe-----------------cccCCcceEEEEEecCC
Q 004477 53 VNAISWNS-------KGSLLISGSDDTHINVWSYSSRK---LLHSI-----------------ETGHSANVFCTKFVPET 105 (751)
Q Consensus 53 V~~l~~s~-------dg~~LaSgs~Dg~I~IWd~~~~~---~~~~l-----------------~~~h~~~V~~v~fsp~s 105 (751)
..|++|.. -|+++|.|..|..|.|||+.-.. +..++ ..+|+..|.++.|+...
T Consensus 176 PLC~ewld~~~~~~~~gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~ 255 (463)
T KOG0270|consen 176 PLCIEWLDHGSKSGGAGNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNF 255 (463)
T ss_pred chhhhhhhcCCCCCCCcceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhcccc
Confidence 35777754 36899999999999999975211 00011 13799999999999875
Q ss_pred CCcEEEEEECCCcEEEEECCCCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCCCC
Q 004477 106 SDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPP 185 (751)
Q Consensus 106 ~~~~l~sgs~Dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~ 185 (751)
-..|||||.|.+|++||+.++ +|..++..|.+.|.+++|+|..+.+|++|+.|++|.+.|.|.....
T Consensus 256 -~nVLaSgsaD~TV~lWD~~~g----------~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s-- 322 (463)
T KOG0270|consen 256 -RNVLASGSADKTVKLWDVDTG----------KPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNS-- 322 (463)
T ss_pred -ceeEEecCCCceEEEEEcCCC----------CcceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCcccc--
Confidence 679999999999999999976 6788888999999999999999999999999999999999974322
Q ss_pred CCCCCCccceEEEecccCceecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCC-CCccccCCCCCCCCcc
Q 004477 186 AGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRML-PPLTSCQKRMSPPPCV 264 (751)
Q Consensus 186 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~-~~~~~~~~~~~~~~~~ 264 (751)
..-|. ....|-.++|+|.....++++..||+|+-+|+|.. +++.++
T Consensus 323 ---------~~~wk--------------~~g~VEkv~w~~~se~~f~~~tddG~v~~~D~R~~~~~vwt~---------- 369 (463)
T KOG0270|consen 323 ---------GKEWK--------------FDGEVEKVAWDPHSENSFFVSTDDGTVYYFDIRNPGKPVWTL---------- 369 (463)
T ss_pred ---------CceEE--------------eccceEEEEecCCCceeEEEecCCceEEeeecCCCCCceeEE----------
Confidence 11121 24578889999988889999999999999999975 333222
Q ss_pred ccccccccccCCccccceEEEEEcCCCC-EEEEEeCCCcEEEEECCCCC
Q 004477 265 NYFCPMHLSEHGRSSLHLTHVTFSPNGE-EVLLSYSGEHVYLMDVNHAG 312 (751)
Q Consensus 265 ~~~~~~~~~~~g~~~~~vt~v~fspdg~-~Ll~~s~d~~I~lwdl~~~~ 312 (751)
..|.. .|.++++++.-. .|++++.|+.|+||++....
T Consensus 370 ----------~AHd~-~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~ 407 (463)
T KOG0270|consen 370 ----------KAHDD-EISGLSVNIQTPGLLSTASTDKVVKLWKFDVDS 407 (463)
T ss_pred ----------EeccC-CcceEEecCCCCcceeeccccceEEEEeecCCC
Confidence 33544 699999998655 56778889999999998743
No 147
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.78 E-value=2.4e-17 Score=160.79 Aligned_cols=238 Identities=17% Similarity=0.232 Sum_probs=159.3
Q ss_pred cccccccccchhhhccccccEEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEecccCCcceEEEEEec
Q 004477 24 PDVNHSLQMHSSLVRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVP 103 (751)
Q Consensus 24 ~~~~~~l~~~~~~i~~~~~~~~L~gH~~~V~~l~~s~dg~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp 103 (751)
...+.++++|+-.-...-.-+....|.++|.+++|+.||+.+++|+.|+.+++||+.+++. .++ ..|.++|.++.|.+
T Consensus 46 ~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S~Q~-~~v-~~Hd~pvkt~~wv~ 123 (347)
T KOG0647|consen 46 GSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLASGQV-SQV-AAHDAPVKTCHWVP 123 (347)
T ss_pred cccCCceEEEEEecCCcccchhhhccCCCeEEEEEccCCceEEeeccCCceEEEEccCCCe-eee-eecccceeEEEEec
Confidence 3567888888765532222256678999999999999999999999999999999999954 455 68999999999998
Q ss_pred CCCCcEEEEEECCCcEEEEECCCCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCC
Q 004477 104 ETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSC 183 (751)
Q Consensus 104 ~s~~~~l~sgs~Dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~ 183 (751)
.-+-..|+|||.|.+|+.||.+.. .++.++. -.++|+++..-. .+++.+..++.|.+|+|+.+...
T Consensus 124 ~~~~~cl~TGSWDKTlKfWD~R~~----------~pv~t~~-LPeRvYa~Dv~~---pm~vVata~r~i~vynL~n~~te 189 (347)
T KOG0647|consen 124 GMNYQCLVTGSWDKTLKFWDTRSS----------NPVATLQ-LPERVYAADVLY---PMAVVATAERHIAVYNLENPPTE 189 (347)
T ss_pred CCCcceeEecccccceeecccCCC----------Ceeeeee-ccceeeehhccC---ceeEEEecCCcEEEEEcCCCcch
Confidence 843458999999999999999964 3344443 345566665432 35556666677777777654322
Q ss_pred CCCCCC---------------------CCccceEEEecccC-----ceecccC----CCCCccceEEEEEeCCCCcEEEE
Q 004477 184 PPAGSS---------------------HQECRNILLDLRCG-----AKRSLAD----PPKQTLSLKSCDISSTRPHLLLV 233 (751)
Q Consensus 184 ~~~~~~---------------------~~~~~~~l~~~~~~-----~~~~~~~----~~~~~~~v~~i~~sp~~~~~l~s 233 (751)
...... .-+.+..+..+..+ ....... .......|++|+|+|. ...|++
T Consensus 190 ~k~~~SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~~~nFtFkCHR~~~~~~~~VYaVNsi~FhP~-hgtlvT 268 (347)
T KOG0647|consen 190 FKRIESPLKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNPKDNFTFKCHRSTNSVNDDVYAVNSIAFHPV-HGTLVT 268 (347)
T ss_pred hhhhcCcccceeeEEEEEecCCceEeeeecceEEEEecCCCCccCceeEEEeccCCCCCCceEEecceEeecc-cceEEE
Confidence 100000 00011111111110 0000000 1112467899999995 679999
Q ss_pred EeCCCeEEEEeCCCCCCccccCCCCCCCCccccccccccccCCccccceEEEEEcCCCCEEEEEeC
Q 004477 234 GGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYS 299 (751)
Q Consensus 234 gs~D~~IriwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~vt~v~fspdg~~Ll~~s~ 299 (751)
++.||++.+||-.....+...+ .| ..+|++.+|+.+|.+++-+.+
T Consensus 269 aGsDGtf~FWDkdar~kLk~s~--------------------~~-~qpItcc~fn~~G~ifaYA~g 313 (347)
T KOG0647|consen 269 AGSDGTFSFWDKDARTKLKTSE--------------------TH-PQPITCCSFNRNGSIFAYALG 313 (347)
T ss_pred ecCCceEEEecchhhhhhhccC--------------------cC-CCccceeEecCCCCEEEEEee
Confidence 9999999999987655443321 12 236999999999998876544
No 148
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.78 E-value=5.2e-18 Score=174.64 Aligned_cols=229 Identities=20% Similarity=0.290 Sum_probs=177.7
Q ss_pred cEEeccCC-CcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEecccCCcceEEEEEecCCCCcEEEEEECCCcEEE
Q 004477 43 ERELEGHQ-GCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRL 121 (751)
Q Consensus 43 ~~~L~gH~-~~V~~l~~s~dg~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~Dg~V~v 121 (751)
+..+.|.. -||.|..++ .++++|+..+.|+|||+.. +.++.+.++|...|++|.+.-. +.+||+++..|.|.|
T Consensus 74 ~~k~~gd~~~Cv~~~s~S---~y~~sgG~~~~Vkiwdl~~-kl~hr~lkdh~stvt~v~YN~~--DeyiAsvs~gGdiii 147 (673)
T KOG4378|consen 74 VRKLTGDNAFCVACASQS---LYEISGGQSGCVKIWDLRA-KLIHRFLKDHQSTVTYVDYNNT--DEYIASVSDGGDIII 147 (673)
T ss_pred eeccccchHHHHhhhhcc---eeeeccCcCceeeehhhHH-HHHhhhccCCcceeEEEEecCC--cceeEEeccCCcEEE
Confidence 34444432 366666665 7999999999999999984 4555555999999999999988 899999999999999
Q ss_pred EECCCCCCCCCCCCCCCCceeeccc-CCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCCCCCCCCCCccceEEEec
Q 004477 122 FNLSRFSGRGLDDNAITPSALYQCH-TRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDL 200 (751)
Q Consensus 122 wd~~~~~~~~~~~~~~~~~~~~~~h-~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~~~~~~~~~~~~l~~~ 200 (751)
+.+.+... ...|.-. ...|.-+.|+|....+|.+++.+|.|.+||+....+.
T Consensus 148 h~~~t~~~----------tt~f~~~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~sp~----------------- 200 (673)
T KOG4378|consen 148 HGTKTKQK----------TTTFTIDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPI----------------- 200 (673)
T ss_pred EecccCcc----------ccceecCCCCeEEEeecccccceeeEeeccCCeEEEEeccCCCcc-----------------
Confidence 99997532 2334322 4567789999988788999999999999999876533
Q ss_pred ccCceecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCccccCCCCCCCCccccccccccccCCcccc
Q 004477 201 RCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSL 280 (751)
Q Consensus 201 ~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 280 (751)
......|..+...|+|+|.+..+|++.+.|..|.+||++...... |+.+ ..
T Consensus 201 -------~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~~----------~l~y------------~~ 251 (673)
T KOG4378|consen 201 -------FHASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQASTD----------RLTY------------SH 251 (673)
T ss_pred -------cchhhhccCCcCcceecCCccceEEEecccceEEEeecccccccc----------eeee------------cC
Confidence 222234778889999999999999999999999999998644322 2211 11
Q ss_pred ceEEEEEcCCCCEEEEEeCCCcEEEEECCCCCcc-eeeeecCCCceeEEeCCCC
Q 004477 281 HLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGR-AMRYTVGDASKIMSFTPTL 333 (751)
Q Consensus 281 ~vt~v~fspdg~~Ll~~s~d~~I~lwdl~~~~~~-~~~~~~~~~~~~~~~sp~~ 333 (751)
+.+.|+|+++|.+|++|...|.|+.||++..+.+ .+...+...+..++|-|..
T Consensus 252 Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~k~Pv~v~sah~~sVt~vafq~s~ 305 (673)
T KOG4378|consen 252 PLSTVAFSECGTYLCAGNSKGELIAYDMRSTKAPVAVRSAHDASVTRVAFQPSP 305 (673)
T ss_pred CcceeeecCCceEEEeecCCceEEEEecccCCCCceEeeecccceeEEEeeecc
Confidence 5889999999999999999999999999986533 4445566677788887763
No 149
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.78 E-value=3.2e-17 Score=168.14 Aligned_cols=202 Identities=16% Similarity=0.226 Sum_probs=157.3
Q ss_pred CCcEEEEEECCCCCEEEEEeCCCcEEEEeCCC--CeEEEEecccCCcceEEEEEecCCCCc-EEEEEECCCcEEEEECCC
Q 004477 50 QGCVNAISWNSKGSLLISGSDDTHINVWSYSS--RKLLHSIETGHSANVFCTKFVPETSDE-LVVSGAGDAEVRLFNLSR 126 (751)
Q Consensus 50 ~~~V~~l~~s~dg~~LaSgs~Dg~I~IWd~~~--~~~~~~l~~~h~~~V~~v~fsp~s~~~-~l~sgs~Dg~V~vwd~~~ 126 (751)
.+.|++|.|+|...+|++|+.|++++||.+.. ...++.+ .--..+|.++.|.|+ |. .+++++.-...+.||+.+
T Consensus 213 ~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~~lqS~-~l~~fPi~~a~f~p~--G~~~i~~s~rrky~ysyDle~ 289 (514)
T KOG2055|consen 213 HGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNPKLQSI-HLEKFPIQKAEFAPN--GHSVIFTSGRRKYLYSYDLET 289 (514)
T ss_pred cCCceEEEecCCCceEEEecCCCcEEEEEecCccChhheee-eeccCccceeeecCC--CceEEEecccceEEEEeeccc
Confidence 57899999999999999999999999998753 3345555 335688999999999 66 899999999999999986
Q ss_pred CCCCCCCCCCCCCceeecccC-CceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCCCCCCCCCCccceEEEecccCce
Q 004477 127 FSGRGLDDNAITPSALYQCHT-RRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAK 205 (751)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~h~-~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~ 205 (751)
..- .++....++. ..+.....+| ++.+|+..|..|.|.+.-..+++.+.
T Consensus 290 ak~--------~k~~~~~g~e~~~~e~FeVSh-d~~fia~~G~~G~I~lLhakT~eli~--------------------- 339 (514)
T KOG2055|consen 290 AKV--------TKLKPPYGVEEKSMERFEVSH-DSNFIAIAGNNGHIHLLHAKTKELIT--------------------- 339 (514)
T ss_pred ccc--------ccccCCCCcccchhheeEecC-CCCeEEEcccCceEEeehhhhhhhhh---------------------
Confidence 532 3344444544 3466778889 66899999999999999887776331
Q ss_pred ecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCccccCCCCCCCCccccccccccccCCccccceEEE
Q 004477 206 RSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHV 285 (751)
Q Consensus 206 ~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~vt~v 285 (751)
.-+-...|..+.|+. +++.|++++.+|.|.+||++... |+..|.. .|. ..-+++
T Consensus 340 -----s~KieG~v~~~~fsS-dsk~l~~~~~~GeV~v~nl~~~~-------------~~~rf~D-----~G~--v~gts~ 393 (514)
T KOG2055|consen 340 -----SFKIEGVVSDFTFSS-DSKELLASGGTGEVYVWNLRQNS-------------CLHRFVD-----DGS--VHGTSL 393 (514)
T ss_pred -----eeeeccEEeeEEEec-CCcEEEEEcCCceEEEEecCCcc-------------eEEEEee-----cCc--cceeee
Confidence 111346789999997 57899999999999999999764 3333321 111 135889
Q ss_pred EEcCCCCEEEEEeCCCcEEEEECCC
Q 004477 286 TFSPNGEEVLLSYSGEHVYLMDVNH 310 (751)
Q Consensus 286 ~fspdg~~Ll~~s~d~~I~lwdl~~ 310 (751)
+.|++|.||++|+..|.|.|||.++
T Consensus 394 ~~S~ng~ylA~GS~~GiVNIYd~~s 418 (514)
T KOG2055|consen 394 CISLNGSYLATGSDSGIVNIYDGNS 418 (514)
T ss_pred eecCCCceEEeccCcceEEEeccch
Confidence 9999999999999999999999877
No 150
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.77 E-value=2e-17 Score=175.53 Aligned_cols=261 Identities=17% Similarity=0.276 Sum_probs=173.7
Q ss_pred EEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEE-ecccCCcceEEEEEecCCCCcEEEEEECCCcEEEE
Q 004477 44 RELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHS-IETGHSANVFCTKFVPETSDELVVSGAGDAEVRLF 122 (751)
Q Consensus 44 ~~L~gH~~~V~~l~~s~dg~~LaSgs~Dg~I~IWd~~~~~~~~~-l~~~h~~~V~~v~fsp~s~~~~l~sgs~Dg~V~vw 122 (751)
+....|.+.|..+.|-|...+|++++.|.++++||++..+++.. +..||.+.|-+++|.|.. ...|++|+.||.|.||
T Consensus 94 k~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s~l~G~~~~~GH~~SvkS~cf~~~n-~~vF~tGgRDg~illW 172 (720)
T KOG0321|consen 94 KKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTSRLVGGRLNLGHTGSVKSECFMPTN-PAVFCTGGRDGEILLW 172 (720)
T ss_pred cccccccceeEeeccCCCceeEEEccCCceeeeeeeccceeecceeecccccccchhhhccCC-CcceeeccCCCcEEEE
Confidence 44567999999999999667999999999999999998887765 237999999999999995 6789999999999999
Q ss_pred ECCCCCCCCC-----------CC--CC----CCCceeecccCCceeE---EEEecCCCCEEEEEeC-CCcEEEEecCCCC
Q 004477 123 NLSRFSGRGL-----------DD--NA----ITPSALYQCHTRRVKK---LAVEVGNPHVVWSASE-DGTLRQHDFRQGS 181 (751)
Q Consensus 123 d~~~~~~~~~-----------~~--~~----~~~~~~~~~h~~~V~~---l~~sp~~~~~l~s~s~-Dg~I~iwDlr~~~ 181 (751)
|++......+ .. .. .+.+.....|...|.+ +.+.. |...|+++|. |+.|++||+|...
T Consensus 173 D~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~fk-De~tlaSaga~D~~iKVWDLRk~~ 251 (720)
T KOG0321|consen 173 DCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTVVLFK-DESTLASAGAADSTIKVWDLRKNY 251 (720)
T ss_pred EEeccchhhHHHHhhhhhccccCCCCCCchhhccccccccccCceeeeeEEEEEe-ccceeeeccCCCcceEEEeecccc
Confidence 9985431110 00 00 1112233345444444 33444 5578888887 9999999999976
Q ss_pred CCCCCCCCCCccceEEEecccCceecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCccccCCCCCCC
Q 004477 182 SCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPP 261 (751)
Q Consensus 182 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~~~~~~~~~~~ 261 (751)
........ ....+.........+.++..... |.+|.+.+.|+.|++|+++.....-
T Consensus 252 ~~~r~ep~--------------~~~~~~t~skrs~G~~nL~lDss-Gt~L~AsCtD~sIy~ynm~s~s~sP--------- 307 (720)
T KOG0321|consen 252 TAYRQEPR--------------GSDKYPTHSKRSVGQVNLILDSS-GTYLFASCTDNSIYFYNMRSLSISP--------- 307 (720)
T ss_pred cccccCCC--------------cccCccCcccceeeeEEEEecCC-CCeEEEEecCCcEEEEeccccCcCc---------
Confidence 43111110 00011111223456777777775 5666666779999999998764210
Q ss_pred CccccccccccccCCccccc-eEEEEEcCCCCEEEEEeCCCcEEEEECCCCCccee-eeecCCCceeEEeCCCCCCcccC
Q 004477 262 PCVNYFCPMHLSEHGRSSLH-LTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAM-RYTVGDASKIMSFTPTLNGLELQ 339 (751)
Q Consensus 262 ~~~~~~~~~~~~~~g~~~~~-vt~v~fspdg~~Ll~~s~d~~I~lwdl~~~~~~~~-~~~~~~~~~~~~~sp~~~~~~~~ 339 (751)
+..| .|+.... -..-..+||+.+|++|+.|+..|+|.+.+...... +..+..-+..++|.|........
T Consensus 308 --~~~~-------sg~~~~sf~vks~lSpd~~~l~SgSsd~~ayiw~vs~~e~~~~~l~Ght~eVt~V~w~pS~~t~v~T 378 (720)
T KOG0321|consen 308 --VAEF-------SGKLNSSFYVKSELSPDDCSLLSGSSDEQAYIWVVSSPEAPPALLLGHTREVTTVRWLPSATTPVAT 378 (720)
T ss_pred --hhhc-------cCcccceeeeeeecCCCCceEeccCCCcceeeeeecCccCChhhhhCcceEEEEEeeccccCCCcee
Confidence 1111 1111111 11234789999999999999999999999764433 34445556667777765444333
No 151
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.77 E-value=1.3e-16 Score=170.76 Aligned_cols=241 Identities=12% Similarity=0.122 Sum_probs=179.9
Q ss_pred ccCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEecccC-CcceEEEEEecCCCCcEEEEEECCCcEEEEECC
Q 004477 47 EGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGH-SANVFCTKFVPETSDELVVSGAGDAEVRLFNLS 125 (751)
Q Consensus 47 ~gH~~~V~~l~~s~dg~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h-~~~V~~v~fsp~s~~~~l~sgs~Dg~V~vwd~~ 125 (751)
.--..+|.+|+|+.+.+.||.+-.||.|-||++...-....+..++ ...|-+++|++. ..|.|.+.+|+|.-||+.
T Consensus 22 d~~Ps~I~slA~s~kS~~lAvsRt~g~IEiwN~~~~w~~~~vi~g~~drsIE~L~W~e~---~RLFS~g~sg~i~EwDl~ 98 (691)
T KOG2048|consen 22 DYKPSEIVSLAYSHKSNQLAVSRTDGNIEIWNLSNNWFLEPVIHGPEDRSIESLAWAEG---GRLFSSGLSGSITEWDLH 98 (691)
T ss_pred eeeccceEEEEEeccCCceeeeccCCcEEEEccCCCceeeEEEecCCCCceeeEEEccC---CeEEeecCCceEEEEecc
Confidence 3456789999999999999999999999999998765444332444 578999999954 678899999999999999
Q ss_pred CCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCCCCCCCCCCccceEEEecccCce
Q 004477 126 RFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAK 205 (751)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~ 205 (751)
+. +++..+..-.+.|++++.+| ....++.|++||.+..++...+...
T Consensus 99 ~l----------k~~~~~d~~gg~IWsiai~p-~~~~l~IgcddGvl~~~s~~p~~I~---------------------- 145 (691)
T KOG2048|consen 99 TL----------KQKYNIDSNGGAIWSIAINP-ENTILAIGCDDGVLYDFSIGPDKIT---------------------- 145 (691)
T ss_pred cC----------ceeEEecCCCcceeEEEeCC-ccceEEeecCCceEEEEecCCceEE----------------------
Confidence 75 66788888899999999999 5588889999997766666554311
Q ss_pred ecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCccccCCCCCCCCccccccccccccCCccccceEEE
Q 004477 206 RSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHV 285 (751)
Q Consensus 206 ~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~vt~v 285 (751)
.-.....++..|.+++|+|+ +..|++|+.||.||+||..+...+.... .....+.. ....-|++|
T Consensus 146 -~~r~l~rq~sRvLslsw~~~-~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~-----------~~~d~l~k--~~~~iVWSv 210 (691)
T KOG2048|consen 146 -YKRSLMRQKSRVLSLSWNPT-GTKIAGGSIDGVIRIWDVKSGQTLHIIT-----------MQLDRLSK--REPTIVWSV 210 (691)
T ss_pred -EEeecccccceEEEEEecCC-ccEEEecccCceEEEEEcCCCceEEEee-----------eccccccc--CCceEEEEE
Confidence 11122335688999999995 6889999999999999999876543110 00011111 112238899
Q ss_pred EEcCCCCEEEEEeCCCcEEEEECCCCCcceeeeecCCCceeEEeCCCCCCcccC
Q 004477 286 TFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVGDASKIMSFTPTLNGLELQ 339 (751)
Q Consensus 286 ~fspdg~~Ll~~s~d~~I~lwdl~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~ 339 (751)
.|-.++ .|++|-+-|+|.+||...+........+...+..++..+..+.+..+
T Consensus 211 ~~Lrd~-tI~sgDS~G~V~FWd~~~gTLiqS~~~h~adVl~Lav~~~~d~vfsa 263 (691)
T KOG2048|consen 211 LFLRDS-TIASGDSAGTVTFWDSIFGTLIQSHSCHDADVLALAVADNEDRVFSA 263 (691)
T ss_pred EEeecC-cEEEecCCceEEEEcccCcchhhhhhhhhcceeEEEEcCCCCeEEEc
Confidence 998776 47889899999999999987666666666666667776665555443
No 152
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.75 E-value=6.5e-17 Score=156.63 Aligned_cols=239 Identities=16% Similarity=0.261 Sum_probs=175.0
Q ss_pred hhccccccEEec-cCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCeE-EEEe----cccCCcceEEEEEecCCCCcE
Q 004477 36 LVRRLSQERELE-GHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKL-LHSI----ETGHSANVFCTKFVPETSDEL 109 (751)
Q Consensus 36 ~i~~~~~~~~L~-gH~~~V~~l~~s~dg~~LaSgs~Dg~I~IWd~~~~~~-~~~l----~~~h~~~V~~v~fsp~s~~~~ 109 (751)
...++.++..|. .|-+.|+||.|.|++..||+-. |..|.+|++..... +..+ ..+|....++-+|+|..++..
T Consensus 108 ~~~tlE~v~~Ldteavg~i~cvew~Pns~klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnq 186 (370)
T KOG1007|consen 108 NSSTLECVASLDTEAVGKINCVEWEPNSDKLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQ 186 (370)
T ss_pred ccchhhHhhcCCHHHhCceeeEEEcCCCCeeEEec-cCceEEEEcccCcchheeecccccccccceecccccCCCCccce
Confidence 344577777776 6778999999999999999886 88999999987665 3333 235677899999999877888
Q ss_pred EEEEECCCcEEEEECCCCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCCCCCCCC
Q 004477 110 VVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSS 189 (751)
Q Consensus 110 l~sgs~Dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~~~~~ 189 (751)
+++. .|+++..||+++.. +....-..|...|..+.|+|...++|+||+.||.|++||+|..+..
T Consensus 187 v~tt-~d~tl~~~D~RT~~---------~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~p------ 250 (370)
T KOG1007|consen 187 VATT-SDSTLQFWDLRTMK---------KNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFP------ 250 (370)
T ss_pred EEEe-CCCcEEEEEccchh---------hhcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCcc------
Confidence 8876 58999999999642 2234456799999999999987889999999999999999987643
Q ss_pred CCccceEEEecccCceecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCccccCCCCC--------CC
Q 004477 190 HQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMS--------PP 261 (751)
Q Consensus 190 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~~~~~~~~~--------~~ 261 (751)
+...++|..+|.++.|+|....+|++|+.|..|.+|-......-..++.... ..
T Consensus 251 ------------------v~el~~HsHWvW~VRfn~~hdqLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dse 312 (370)
T KOG1007|consen 251 ------------------VQELPGHSHWVWAVRFNPEHDQLILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSE 312 (370)
T ss_pred ------------------ccccCCCceEEEEEEecCccceEEEecCCCceeEEEeccccccccccccccccccCcchhhH
Confidence 5566778999999999998888999999999999998865542111111000 00
Q ss_pred Ccccccccccccc-CCccccceEEEEEcCCCCEEEEE-eCCCcEEEEECCC
Q 004477 262 PCVNYFCPMHLSE-HGRSSLHLTHVTFSPNGEEVLLS-YSGEHVYLMDVNH 310 (751)
Q Consensus 262 ~~~~~~~~~~~~~-~g~~~~~vt~v~fspdg~~Ll~~-s~d~~I~lwdl~~ 310 (751)
.-++.+..+.+.. ..|.. .|++++||.-..+++++ +.||.+.|=.+..
T Consensus 313 er~kpL~dg~l~tydehED-SVY~~aWSsadPWiFASLSYDGRviIs~V~r 362 (370)
T KOG1007|consen 313 ERVKPLQDGQLETYDEHED-SVYALAWSSADPWIFASLSYDGRVIISSVPR 362 (370)
T ss_pred Hhccccccccccccccccc-ceEEEeeccCCCeeEEEeccCceEEeecCCh
Confidence 0011111111111 12444 59999999977766554 6699988866543
No 153
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.75 E-value=1.6e-17 Score=171.33 Aligned_cols=222 Identities=13% Similarity=0.234 Sum_probs=168.1
Q ss_pred CCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEE--EEecccCCcceEEEEEecCCCCcEEEEEECCCcEEEEECCCC
Q 004477 50 QGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLL--HSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRF 127 (751)
Q Consensus 50 ~~~V~~l~~s~dg~~LaSgs~Dg~I~IWd~~~~~~~--~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~Dg~V~vwd~~~~ 127 (751)
...|.++...|||+.|++|+.-.+|.|||+...... ..+ +.-.-+...++.+|+ .++.++|..||.|.|||+...
T Consensus 465 dnyiRSckL~pdgrtLivGGeastlsiWDLAapTprikael-tssapaCyALa~spD--akvcFsccsdGnI~vwDLhnq 541 (705)
T KOG0639|consen 465 DNYIRSCKLLPDGRTLIVGGEASTLSIWDLAAPTPRIKAEL-TSSAPACYALAISPD--AKVCFSCCSDGNIAVWDLHNQ 541 (705)
T ss_pred ccceeeeEecCCCceEEeccccceeeeeeccCCCcchhhhc-CCcchhhhhhhcCCc--cceeeeeccCCcEEEEEcccc
Confidence 456788999999999999999999999998755432 233 344456788999999 588899999999999999864
Q ss_pred CCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCCCCCC--------CCCCccceEEEe
Q 004477 128 SGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAG--------SSHQECRNILLD 199 (751)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~~~--------~~~~~~~~~l~~ 199 (751)
..+..|++|++.+.||.+++ ++..||||+-|.+||.||+|++..+..-. ..-.....+...
T Consensus 542 ----------~~VrqfqGhtDGascIdis~-dGtklWTGGlDntvRcWDlregrqlqqhdF~SQIfSLg~cP~~dWlavG 610 (705)
T KOG0639|consen 542 ----------TLVRQFQGHTDGASCIDISK-DGTKLWTGGLDNTVRCWDLREGRQLQQHDFSSQIFSLGYCPTGDWLAVG 610 (705)
T ss_pred ----------eeeecccCCCCCceeEEecC-CCceeecCCCccceeehhhhhhhhhhhhhhhhhheecccCCCccceeee
Confidence 45889999999999999999 77999999999999999999987652110 000111123333
Q ss_pred cccCceeccc-------CCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCccccCCCCCCCCcccccccccc
Q 004477 200 LRCGAKRSLA-------DPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHL 272 (751)
Q Consensus 200 ~~~~~~~~~~-------~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (751)
+..+.+..+. ....|...|-++.|.+. ++++++.+.|+.+..|..--+..+..
T Consensus 611 Mens~vevlh~skp~kyqlhlheScVLSlKFa~c-GkwfvStGkDnlLnawrtPyGasiFq------------------- 670 (705)
T KOG0639|consen 611 MENSNVEVLHTSKPEKYQLHLHESCVLSLKFAYC-GKWFVSTGKDNLLNAWRTPYGASIFQ------------------- 670 (705)
T ss_pred cccCcEEEEecCCccceeecccccEEEEEEeccc-CceeeecCchhhhhhccCccccceee-------------------
Confidence 3333332222 12336778999999994 89999999999999998765443211
Q ss_pred ccCCccccceEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 004477 273 SEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDV 308 (751)
Q Consensus 273 ~~~g~~~~~vt~v~fspdg~~Ll~~s~d~~I~lwdl 308 (751)
......|.++.+|.|.++|++|++|....||.+
T Consensus 671 ---skE~SsVlsCDIS~ddkyIVTGSGdkkATVYeV 703 (705)
T KOG0639|consen 671 ---SKESSSVLSCDISFDDKYIVTGSGDKKATVYEV 703 (705)
T ss_pred ---ccccCcceeeeeccCceEEEecCCCcceEEEEE
Confidence 112336999999999999999999998888875
No 154
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.75 E-value=1.4e-16 Score=175.84 Aligned_cols=255 Identities=14% Similarity=0.177 Sum_probs=187.0
Q ss_pred ccccccchhhhccccccEEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEecccCCcceEEEEEecCCC
Q 004477 27 NHSLQMHSSLVRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETS 106 (751)
Q Consensus 27 ~~~l~~~~~~i~~~~~~~~L~gH~~~V~~l~~s~dg~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~s~ 106 (751)
+..+++|......-. -.++.-|...|.+++-. +.+|++|+.+++|.+|...++..-..+ ...+-++.+++|+-+
T Consensus 34 dg~ir~~~~~sd~e~-P~ti~~~g~~v~~ia~~--s~~f~~~s~~~tv~~y~fps~~~~~iL-~Rftlp~r~~~v~g~-- 107 (933)
T KOG1274|consen 34 DGDIRKWKTNSDEEE-PETIDISGELVSSIACY--SNHFLTGSEQNTVLRYKFPSGEEDTIL-ARFTLPIRDLAVSGS-- 107 (933)
T ss_pred CCceEEeecCCcccC-CchhhccCceeEEEeec--ccceEEeeccceEEEeeCCCCCcccee-eeeeccceEEEEecC--
Confidence 444555544333211 22233377777777764 559999999999999999877654444 566889999999988
Q ss_pred CcEEEEEECCCcEEEEECCCCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCCCCC
Q 004477 107 DELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPA 186 (751)
Q Consensus 107 ~~~l~sgs~Dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~~ 186 (751)
|.++|.||.|-.|++-++... .....+.+|..+|.++.|+| .+.+||+.+-||.|++||+.++......
T Consensus 108 g~~iaagsdD~~vK~~~~~D~----------s~~~~lrgh~apVl~l~~~p-~~~fLAvss~dG~v~iw~~~~~~~~~tl 176 (933)
T KOG1274|consen 108 GKMIAAGSDDTAVKLLNLDDS----------SQEKVLRGHDAPVLQLSYDP-KGNFLAVSSCDGKVQIWDLQDGILSKTL 176 (933)
T ss_pred CcEEEeecCceeEEEEecccc----------chheeecccCCceeeeeEcC-CCCEEEEEecCceEEEEEcccchhhhhc
Confidence 899999999999999999875 33678999999999999999 7799999999999999999987643211
Q ss_pred CCCCCccceEEEecccCceecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCccccCCCCCCCCcccc
Q 004477 187 GSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNY 266 (751)
Q Consensus 187 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~~~~~~~~~~~~~~~~ 266 (751)
.... .+ ........+..++|+|+ +..+++.+.|+.|++|++........+..
T Consensus 177 ~~v~-k~----------------n~~~~s~i~~~~aW~Pk-~g~la~~~~d~~Vkvy~r~~we~~f~Lr~---------- 228 (933)
T KOG1274|consen 177 TGVD-KD----------------NEFILSRICTRLAWHPK-GGTLAVPPVDNTVKVYSRKGWELQFKLRD---------- 228 (933)
T ss_pred ccCC-cc----------------ccccccceeeeeeecCC-CCeEEeeccCCeEEEEccCCceeheeecc----------
Confidence 1100 00 00001345677899995 56777788999999999988765433321
Q ss_pred ccccccccCCccccceEEEEEcCCCCEEEEEeCCCcEEEEECCCCCcceeeeecCCCceeEEeCCCCCCcccC
Q 004477 267 FCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVGDASKIMSFTPTLNGLELQ 339 (751)
Q Consensus 267 ~~~~~~~~~g~~~~~vt~v~fspdg~~Ll~~s~d~~I~lwdl~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~ 339 (751)
.-+.. .++.+.|+|+|+||++++.+|.|.|||.++-. . ......+..++|.|..+.+.+-
T Consensus 229 --------~~~ss-~~~~~~wsPnG~YiAAs~~~g~I~vWnv~t~~---~-~~~~~~Vc~~aw~p~~n~it~~ 288 (933)
T KOG1274|consen 229 --------KLSSS-KFSDLQWSPNGKYIAASTLDGQILVWNVDTHE---R-HEFKRAVCCEAWKPNANAITLI 288 (933)
T ss_pred --------ccccc-ceEEEEEcCCCcEEeeeccCCcEEEEecccch---h-ccccceeEEEecCCCCCeeEEE
Confidence 11222 38999999999999999999999999999711 1 3345567778888888877544
No 155
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.74 E-value=9.7e-18 Score=182.15 Aligned_cols=281 Identities=17% Similarity=0.208 Sum_probs=194.6
Q ss_pred cccchhhhccccccEEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEecccCCcceEEEEEecCCCCcE
Q 004477 30 LQMHSSLVRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDEL 109 (751)
Q Consensus 30 l~~~~~~i~~~~~~~~L~gH~~~V~~l~~s~dg~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~s~~~~ 109 (751)
+......+++++.++.|.||...|.|+.|...|.++++|++|..|+||.+.+..++... .||.+.|+.++.+.+ +.+
T Consensus 170 ~akPgtmvqkmk~ikrLlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lAs~-rGhs~ditdlavs~~--n~~ 246 (1113)
T KOG0644|consen 170 IAKPGTMVQKMKNIKRLLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCLASC-RGHSGDITDLAVSSN--NTM 246 (1113)
T ss_pred ecCcHHHHHHHHHHHHHHhhhhheeeeeeccccceEeecCccceeeeeeccchhhhccC-CCCccccchhccchh--hhh
Confidence 34445689999999999999999999999999999999999999999999999999999 899999999999988 688
Q ss_pred EEEEECCCcEEEEECCCCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEecC-CCCCCCCC--
Q 004477 110 VVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFR-QGSSCPPA-- 186 (751)
Q Consensus 110 l~sgs~Dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr-~~~~~~~~-- 186 (751)
++++|.|..|++|-+..+ .++.++.+|++.|++|+|+|. .+.+.||++++||.| ......+.
T Consensus 247 iaaaS~D~vIrvWrl~~~----------~pvsvLrghtgavtaiafsP~-----~sss~dgt~~~wd~r~~~~~y~prp~ 311 (1113)
T KOG0644|consen 247 IAAASNDKVIRVWRLPDG----------APVSVLRGHTGAVTAIAFSPR-----ASSSDDGTCRIWDARLEPRIYVPRPL 311 (1113)
T ss_pred hhhcccCceEEEEecCCC----------chHHHHhccccceeeeccCcc-----ccCCCCCceEeccccccccccCCCCC
Confidence 999999999999999975 779999999999999999993 288999999999999 22111100
Q ss_pred -CC-CCCccceEE----EecccCcee---cccCC---CCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCcccc
Q 004477 187 -GS-SHQECRNIL----LDLRCGAKR---SLADP---PKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSC 254 (751)
Q Consensus 187 -~~-~~~~~~~~l----~~~~~~~~~---~~~~~---~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~~~~ 254 (751)
.. ....+...+ ....++... ..... ..+...+.-+.++.+-..+.+++-.+..+.+|++.++..+..+
T Consensus 312 ~~~~~~~~~s~~~~~~~~~f~Tgs~d~ea~n~e~~~l~~~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l~H~l 391 (1113)
T KOG0644|consen 312 KFTEKDLVDSILFENNGDRFLTGSRDGEARNHEFEQLAWRSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQLLHNL 391 (1113)
T ss_pred CcccccceeeeeccccccccccccCCcccccchhhHhhhhccceEEEeccccccccceeeeeeeEeeeeecccchhhhhh
Confidence 00 000110000 000111000 00000 0011111111111112245555666777778887766533221
Q ss_pred CCCCCCCCccccccccccccCCccccceEEEEEcCCCC-EEEEEeCCCcEEEEECCCCCcceeeeecCCCceeEEeCCCC
Q 004477 255 QKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGE-EVLLSYSGEHVYLMDVNHAGGRAMRYTVGDASKIMSFTPTL 333 (751)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~~g~~~~~vt~v~fspdg~-~Ll~~s~d~~I~lwdl~~~~~~~~~~~~~~~~~~~~~sp~~ 333 (751)
.+|.. .+.-+.++|-.. ...+++.||.+.|||+-.+......+......-..+|++++
T Consensus 392 --------------------~ghsd-~~yvLd~Hpfn~ri~msag~dgst~iwdi~eg~pik~y~~gh~kl~d~kFSqdg 450 (1113)
T KOG0644|consen 392 --------------------MGHSD-EVYVLDVHPFNPRIAMSAGYDGSTIIWDIWEGIPIKHYFIGHGKLVDGKFSQDG 450 (1113)
T ss_pred --------------------ccccc-ceeeeeecCCCcHhhhhccCCCceEeeecccCCcceeeecccceeeccccCCCC
Confidence 23444 488899999655 45577889999999999987666666444445556788888
Q ss_pred CCcccCCCcccccccc
Q 004477 334 NGLELQPPIHDFLQTN 349 (751)
Q Consensus 334 ~~~~~~~~~~~~~~~~ 349 (751)
..+.+....++....|
T Consensus 451 ts~~lsd~hgql~i~g 466 (1113)
T KOG0644|consen 451 TSIALSDDHGQLYILG 466 (1113)
T ss_pred ceEecCCCCCceEEec
Confidence 7777776666555444
No 156
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.73 E-value=2.3e-17 Score=186.34 Aligned_cols=239 Identities=20% Similarity=0.290 Sum_probs=176.7
Q ss_pred cccEEeccCCCcEEEEEECCCCCE----EEEEeCCCcEEEEeCCC---C---eEEEEecccCCcceEEEEEecCCCCcEE
Q 004477 41 SQERELEGHQGCVNAISWNSKGSL----LISGSDDTHINVWSYSS---R---KLLHSIETGHSANVFCTKFVPETSDELV 110 (751)
Q Consensus 41 ~~~~~L~gH~~~V~~l~~s~dg~~----LaSgs~Dg~I~IWd~~~---~---~~~~~l~~~h~~~V~~v~fsp~s~~~~l 110 (751)
++...+. -....+.|+|.+.|.. ||.|..||.|.+||... + ..+.+. ..|++.|..+.|++.. +++|
T Consensus 56 k~~~s~~-s~~rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~-~~h~G~V~gLDfN~~q-~nlL 132 (1049)
T KOG0307|consen 56 KPVGSLQ-SSNRFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIANASEEVLATK-SKHTGPVLGLDFNPFQ-GNLL 132 (1049)
T ss_pred ccccccc-ccccceeeeecccCCCccceeeccccCCceEEecchhhccCcchHHHhhh-cccCCceeeeeccccC-Ccee
Confidence 4444443 2456789999997765 89999999999999764 2 233344 6899999999999996 7899
Q ss_pred EEEECCCcEEEEECCCCCCCCCCCCCCCCcee-ecccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCCCCCCCC
Q 004477 111 VSGAGDAEVRLFNLSRFSGRGLDDNAITPSAL-YQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSS 189 (751)
Q Consensus 111 ~sgs~Dg~V~vwd~~~~~~~~~~~~~~~~~~~-~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~~~~~ 189 (751)
++|+.||.|.|||+...+. +... -..-.+.|++++|+....++|++++.+|++.|||+|..+.+...
T Consensus 133 ASGa~~geI~iWDlnn~~t---------P~~~~~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~l--- 200 (1049)
T KOG0307|consen 133 ASGADDGEILIWDLNKPET---------PFTPGSQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPIIKL--- 200 (1049)
T ss_pred eccCCCCcEEEeccCCcCC---------CCCCCCCCCcccceEeccchhhhHHhhccCCCCCceeccccCCCccccc---
Confidence 9999999999999996421 1111 22346789999999878899999999999999999998643211
Q ss_pred CCccceEEEecccCceecccCCCCCccceEEEEEeCCCCcEEEEEeCC---CeEEEEeCCCCCCccccCCCCCCCCcccc
Q 004477 190 HQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSD---AFARLYDRRMLPPLTSCQKRMSPPPCVNY 266 (751)
Q Consensus 190 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D---~~IriwD~~~~~~~~~~~~~~~~~~~~~~ 266 (751)
.... ....+..++|+|++...|++++.| ..|.+||+|.... .++.
T Consensus 201 -------------------s~~~-~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~ass------------P~k~ 248 (1049)
T KOG0307|consen 201 -------------------SDTP-GRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFASS------------PLKI 248 (1049)
T ss_pred -------------------ccCC-CccceeeeeeCCCCceeeeeecCCCCCceeEeecccccCC------------chhh
Confidence 1111 124578899999988888888876 5799999986431 1111
Q ss_pred ccccccccCCccccceEEEEEcCCC-CEEEEEeCCCcEEEEECCCCCcceeeeecCCCceeEEeCCCCC
Q 004477 267 FCPMHLSEHGRSSLHLTHVTFSPNG-EEVLLSYSGEHVYLMDVNHAGGRAMRYTVGDASKIMSFTPTLN 334 (751)
Q Consensus 267 ~~~~~~~~~g~~~~~vt~v~fspdg-~~Ll~~s~d~~I~lwdl~~~~~~~~~~~~~~~~~~~~~sp~~~ 334 (751)
+ .+|.. .|.++.|++.+ .+|++++.|+.|.+|+.++++.....-..+.....+.|.|...
T Consensus 249 ~-------~~H~~-GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~~~p~~~nW~fdv~w~pr~P 309 (1049)
T KOG0307|consen 249 L-------EGHQR-GILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVLGELPAQGNWCFDVQWCPRNP 309 (1049)
T ss_pred h-------ccccc-ceeeeccCCCCchhhhcccCCCCeeEecCCCceEeeecCCCCcceeeeeecCCCc
Confidence 1 34555 59999999966 7888888999999999999754444444455566677777665
No 157
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.73 E-value=1.1e-16 Score=155.16 Aligned_cols=233 Identities=16% Similarity=0.274 Sum_probs=173.0
Q ss_pred cCCCcEEEEEECCCC-----CEEEEEeCCCcEEEEeCCC--CeEE-EE-e----cccCCcceEEEEEecCCCCcEEEEEE
Q 004477 48 GHQGCVNAISWNSKG-----SLLISGSDDTHINVWSYSS--RKLL-HS-I----ETGHSANVFCTKFVPETSDELVVSGA 114 (751)
Q Consensus 48 gH~~~V~~l~~s~dg-----~~LaSgs~Dg~I~IWd~~~--~~~~-~~-l----~~~h~~~V~~v~fsp~s~~~~l~sgs 114 (751)
.|.-+++.+.|.|+. .+|||.++ .++||.+.. .+.. .. + ...+.+++++..|+.-. .++|.++|
T Consensus 94 d~~YP~tK~~wiPd~~g~~pdlLATs~D--~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~d-p~~igtSS 170 (364)
T KOG0290|consen 94 DHPYPVTKLMWIPDSKGVYPDLLATSSD--FLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVD-PNLIGTSS 170 (364)
T ss_pred CCCCCccceEecCCccccCcchhhcccC--eEEEEeccCcCCceehhhhhccCcccccCCcccccccccCC-cceeEeec
Confidence 588999999999976 47777765 799999863 2211 11 1 13567899999999764 68999999
Q ss_pred CCCcEEEEECCCCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCCCCCCCCCCccc
Q 004477 115 GDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECR 194 (751)
Q Consensus 115 ~Dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~~~~~~~~~~ 194 (751)
-|.+..|||++++.. ......+-.|...|..|+|...+..+|+|.|.||+||+||+|.-...
T Consensus 171 iDTTCTiWdie~~~~-------~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHS----------- 232 (364)
T KOG0290|consen 171 IDTTCTIWDIETGVS-------GTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHS----------- 232 (364)
T ss_pred ccCeEEEEEEeeccc-------cceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEecccccc-----------
Confidence 999999999997511 12245677899999999999866789999999999999999986532
Q ss_pred eEEEecccCceecccCCCCCccceEEEEEeCCCCcEEEEEeCC-CeEEEEeCCCCCCccccCCCCCCCCccccccccccc
Q 004477 195 NILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSD-AFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLS 273 (751)
Q Consensus 195 ~~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D-~~IriwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (751)
.+++ ..+....++..++|++.+++++++-..| ..|.|.|+|.... .+..+
T Consensus 233 TIIY-----------E~p~~~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P~t------------pva~L------ 283 (364)
T KOG0290|consen 233 TIIY-----------EDPSPSTPLLRLSWNKQDPNYMATFAMDSNKVVILDIRVPCT------------PVARL------ 283 (364)
T ss_pred eEEe-----------cCCCCCCcceeeccCcCCchHHhhhhcCCceEEEEEecCCCc------------ceehh------
Confidence 2333 2233356788999999999999997766 5799999997431 11111
Q ss_pred cCCccccceEEEEEcCC-CCEEEEEeCCCcEEEEECCCCCc-----ceeeeecCCCceeEEeCCC
Q 004477 274 EHGRSSLHLTHVTFSPN-GEEVLLSYSGEHVYLMDVNHAGG-----RAMRYTVGDASKIMSFTPT 332 (751)
Q Consensus 274 ~~g~~~~~vt~v~fspd-g~~Ll~~s~d~~I~lwdl~~~~~-----~~~~~~~~~~~~~~~~sp~ 332 (751)
++|.. .|+.++|.|. ...|++++.|.++.|||+..... +...+..++-++.+.|+|.
T Consensus 284 -~~H~a-~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~~~~~~dPilay~a~~EVNqi~Ws~~ 346 (364)
T KOG0290|consen 284 -RNHQA-SVNGIAWAPHSSSHICTAGDDCQALIWDLQQMPRENGEDPILAYTAGGEVNQIQWSSS 346 (364)
T ss_pred -hcCcc-cccceEecCCCCceeeecCCcceEEEEecccccccCCCCchhhhhccceeeeeeeccc
Confidence 45665 5999999995 56889999999999999987433 2334455666677777754
No 158
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.72 E-value=1.1e-16 Score=157.81 Aligned_cols=241 Identities=16% Similarity=0.225 Sum_probs=169.1
Q ss_pred hccccccEEeccCCCcEEEEEECCCC-CEEEEEeCCCcEEEEeCCCCeEEEEe--cccCCcceEEEEEecCCCCcEEEEE
Q 004477 37 VRRLSQERELEGHQGCVNAISWNSKG-SLLISGSDDTHINVWSYSSRKLLHSI--ETGHSANVFCTKFVPETSDELVVSG 113 (751)
Q Consensus 37 i~~~~~~~~L~gH~~~V~~l~~s~dg-~~LaSgs~Dg~I~IWd~~~~~~~~~l--~~~h~~~V~~v~fsp~s~~~~l~sg 113 (751)
..+.++...|.||.+.||.|.|.|+. ++|++||.|..|++||+.+..++..+ ..||.+.|.++.|+++ |.+|+||
T Consensus 122 ~~~~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfGG~egHrdeVLSvD~~~~--gd~i~Sc 199 (385)
T KOG1034|consen 122 VVSGQCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVFGGVEGHRDEVLSVDFSLD--GDRIASC 199 (385)
T ss_pred cchhhhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEecccccccCcEEEEEEcCC--CCeeecc
Confidence 44556778899999999999999964 79999999999999999999999887 2479999999999999 8999999
Q ss_pred ECCCcEEEEECCCCCC--CCC------CCCCC---------CCce-eecccCCceeEEEEecCCCCEEEEEeCCCcEEEE
Q 004477 114 AGDAEVRLFNLSRFSG--RGL------DDNAI---------TPSA-LYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQH 175 (751)
Q Consensus 114 s~Dg~V~vwd~~~~~~--~~~------~~~~~---------~~~~-~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iw 175 (751)
+.|.++++|++...+- ... ..... -|.. +-.-|+..|-|+.|- +.+++|-|-++.|..|
T Consensus 200 GmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw~---gd~ilSkscenaI~~w 276 (385)
T KOG1034|consen 200 GMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRWF---GDFILSKSCENAIVCW 276 (385)
T ss_pred CCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccchHHHHHHH---hhheeecccCceEEEE
Confidence 9999999999983211 000 00000 0111 234589999999996 3688899999999999
Q ss_pred ecCCCCCCCCCCCCCCccceEEEecccCceecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCccccC
Q 004477 176 DFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQ 255 (751)
Q Consensus 176 Dlr~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~~~~~ 255 (751)
....-+...........+..++-.+. .+.-..+....+|+| -.++||.|...|.|.+||++...+.
T Consensus 277 ~pgkl~e~~~~vkp~es~~Ti~~~~~---------~~~c~iWfirf~~d~-~~~~la~gnq~g~v~vwdL~~~ep~---- 342 (385)
T KOG1034|consen 277 KPGKLEESIHNVKPPESATTILGEFD---------YPMCDIWFIRFAFDP-WQKMLALGNQSGKVYVWDLDNNEPP---- 342 (385)
T ss_pred ecchhhhhhhccCCCccceeeeeEec---------cCccceEEEEEeecH-HHHHHhhccCCCcEEEEECCCCCCc----
Confidence 87322111000001111222222111 111223444556677 3689999999999999999976542
Q ss_pred CCCCCCCccccccccccccCCccccceEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 004477 256 KRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVN 309 (751)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~g~~~~~vt~v~fspdg~~Ll~~s~d~~I~lwdl~ 309 (751)
.|.. +.. ......|...+||.||..|+....|+.|.-||.-
T Consensus 343 ------~~tt-----l~~--s~~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwdrv 383 (385)
T KOG1034|consen 343 ------KCTT-----LTH--SKSGSTVRQTSFSRDGSILVLVCDDGTVWRWDRV 383 (385)
T ss_pred ------cCce-----EEe--ccccceeeeeeecccCcEEEEEeCCCcEEEEEee
Confidence 1111 111 1122358999999999999999999999999854
No 159
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.71 E-value=2.7e-17 Score=185.87 Aligned_cols=219 Identities=17% Similarity=0.206 Sum_probs=174.7
Q ss_pred ccccccEEeccCCCcEEEEEECCCC-CEEEEEeCCCcEEEEeCCCCeEEEEe-cccCCcceEEEEEecCCCCcEEEEEEC
Q 004477 38 RRLSQERELEGHQGCVNAISWNSKG-SLLISGSDDTHINVWSYSSRKLLHSI-ETGHSANVFCTKFVPETSDELVVSGAG 115 (751)
Q Consensus 38 ~~~~~~~~L~gH~~~V~~l~~s~dg-~~LaSgs~Dg~I~IWd~~~~~~~~~l-~~~h~~~V~~v~fsp~s~~~~l~sgs~ 115 (751)
.....+.++..|+|.|..|.|++.. ++||||+.||.|.|||+..-....+. ...-...|.+++|+..- ..+|++++.
T Consensus 104 ~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP~~~~~~~~~~eI~~lsWNrkv-qhILAS~s~ 182 (1049)
T KOG0307|consen 104 ASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILIWDLNKPETPFTPGSQAPPSEIKCLSWNRKV-SHILASGSP 182 (1049)
T ss_pred cchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEEeccCCcCCCCCCCCCCCcccceEeccchhh-hHHhhccCC
Confidence 3445677889999999999999965 49999999999999999875443333 12356789999999874 578999999
Q ss_pred CCcEEEEECCCCCCCCCCCCCCCCceeecccCC--ceeEEEEecCCCCEEEEEeCCC---cEEEEecCCCCCCCCCCCCC
Q 004477 116 DAEVRLFNLSRFSGRGLDDNAITPSALYQCHTR--RVKKLAVEVGNPHVVWSASEDG---TLRQHDFRQGSSCPPAGSSH 190 (751)
Q Consensus 116 Dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~--~V~~l~~sp~~~~~l~s~s~Dg---~I~iwDlr~~~~~~~~~~~~ 190 (751)
+|.+.|||++.. +++..+..|.. .+..++|+|++...++++++|. .|.+||+|.....
T Consensus 183 sg~~~iWDlr~~----------~pii~ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~assP------- 245 (1049)
T KOG0307|consen 183 SGRAVIWDLRKK----------KPIIKLSDTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFASSP------- 245 (1049)
T ss_pred CCCceeccccCC----------CcccccccCCCccceeeeeeCCCCceeeeeecCCCCCceeEeecccccCCc-------
Confidence 999999999964 34555554544 4778999998888888888765 6899999986543
Q ss_pred CccceEEEecccCceecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCccccCCCCCCCCcccccccc
Q 004477 191 QECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPM 270 (751)
Q Consensus 191 ~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (751)
+.....|...|.+++|++.|.+++++++.|+.|.+|+..+++.+..+..
T Consensus 246 -----------------~k~~~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~~~p~-------------- 294 (1049)
T KOG0307|consen 246 -----------------LKILEGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVLGELPA-------------- 294 (1049)
T ss_pred -----------------hhhhcccccceeeeccCCCCchhhhcccCCCCeeEecCCCceEeeecCC--------------
Confidence 2223458889999999999999999999999999999999876655421
Q ss_pred ccccCCccccceEEEEEcCCCC-EEEEEeCCCcEEEEECCCCC
Q 004477 271 HLSEHGRSSLHLTHVTFSPNGE-EVLLSYSGEHVYLMDVNHAG 312 (751)
Q Consensus 271 ~~~~~g~~~~~vt~v~fspdg~-~Ll~~s~d~~I~lwdl~~~~ 312 (751)
.+.++..+.|+|... .+++++-||.|-||.+.+..
T Consensus 295 -------~~nW~fdv~w~pr~P~~~A~asfdgkI~I~sl~~~~ 330 (1049)
T KOG0307|consen 295 -------QGNWCFDVQWCPRNPSVMAAASFDGKISIYSLQGTD 330 (1049)
T ss_pred -------CCcceeeeeecCCCcchhhhheeccceeeeeeecCC
Confidence 123689999999776 67777889999999998865
No 160
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.71 E-value=5.5e-17 Score=159.88 Aligned_cols=271 Identities=15% Similarity=0.177 Sum_probs=178.3
Q ss_pred cCCCcEEEEEECCC----CCEEEEEeCCCcEEEEeCCCCeEEEEecccCCcceEEEEEecCCCCcEEEEEECCCcEEEEE
Q 004477 48 GHQGCVNAISWNSK----GSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFN 123 (751)
Q Consensus 48 gH~~~V~~l~~s~d----g~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~Dg~V~vwd 123 (751)
.|...-..++|+-+ ..+||.|+.-|.|+|.|+.+++....+ .+|...|+.++|.|.. .++|++||.|.+||+|+
T Consensus 87 d~~Esfytcsw~yd~~~~~p~la~~G~~GvIrVid~~~~~~~~~~-~ghG~sINeik~~p~~-~qlvls~SkD~svRlwn 164 (385)
T KOG1034|consen 87 DHDESFYTCSWSYDSNTGNPFLAAGGYLGVIRVIDVVSGQCSKNY-RGHGGSINEIKFHPDR-PQLVLSASKDHSVRLWN 164 (385)
T ss_pred CCCcceEEEEEEecCCCCCeeEEeecceeEEEEEecchhhhccce-eccCccchhhhcCCCC-CcEEEEecCCceEEEEe
Confidence 37778888999764 348999999999999999999999888 8999999999999996 68999999999999999
Q ss_pred CCCCCCCCCCCCCCCCcee---ecccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCCCCCC---CCCCccceEE
Q 004477 124 LSRFSGRGLDDNAITPSAL---YQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAG---SSHQECRNIL 197 (751)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~---~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~~~---~~~~~~~~~l 197 (751)
+++. .++.. +.||.+.|.++.|++ ++..|+|||.|.+|++|++...+...... .-..+.....
T Consensus 165 I~~~----------~Cv~VfGG~egHrdeVLSvD~~~-~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~p 233 (385)
T KOG1034|consen 165 IQTD----------VCVAVFGGVEGHRDEVLSVDFSL-DGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRP 233 (385)
T ss_pred ccCC----------eEEEEecccccccCcEEEEEEcC-CCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCc
Confidence 9964 33444 468999999999999 66799999999999999998543210000 0000000000
Q ss_pred EecccCceecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCC-CccccCCCCCCCCccccccccccccCC
Q 004477 198 LDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLP-PLTSCQKRMSPPPCVNYFCPMHLSEHG 276 (751)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~g 276 (751)
+-...-..........|...|-|+.|- ++++++-+-++.|..|..-... .+... ..+..+...+....+ .
T Consensus 234 fpt~~~~fp~fst~diHrnyVDCvrw~---gd~ilSkscenaI~~w~pgkl~e~~~~v---kp~es~~Ti~~~~~~---~ 304 (385)
T KOG1034|consen 234 FPTPKTHFPDFSTTDIHRNYVDCVRWF---GDFILSKSCENAIVCWKPGKLEESIHNV---KPPESATTILGEFDY---P 304 (385)
T ss_pred CCccccccccccccccccchHHHHHHH---hhheeecccCceEEEEecchhhhhhhcc---CCCccceeeeeEecc---C
Confidence 000000000011223466677777776 4699999999999999884322 21111 011111111111111 1
Q ss_pred ccccceEEEEEcCCCCEEEEEeCCCcEEEEECCCCCcce-eeee---cCCCceeEEeCCCCCCcccCC
Q 004477 277 RSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRA-MRYT---VGDASKIMSFTPTLNGLELQP 340 (751)
Q Consensus 277 ~~~~~vt~v~fspdg~~Ll~~s~d~~I~lwdl~~~~~~~-~~~~---~~~~~~~~~~sp~~~~~~~~~ 340 (751)
....+....+|+|-++.|+.|...|.|++||+.+..... .... .+..++..+|+.+..-+.+..
T Consensus 305 ~c~iWfirf~~d~~~~~la~gnq~g~v~vwdL~~~ep~~~ttl~~s~~~~tVRQ~sfS~dgs~lv~vc 372 (385)
T KOG1034|consen 305 MCDIWFIRFAFDPWQKMLALGNQSGKVYVWDLDNNEPPKCTTLTHSKSGSTVRQTSFSRDGSILVLVC 372 (385)
T ss_pred ccceEEEEEeecHHHHHHhhccCCCcEEEEECCCCCCccCceEEeccccceeeeeeecccCcEEEEEe
Confidence 112123345667789999999999999999999855421 1222 244566677777665554443
No 161
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.71 E-value=7.5e-15 Score=155.33 Aligned_cols=216 Identities=19% Similarity=0.289 Sum_probs=150.1
Q ss_pred cccccEEeccCCCcEEEEEECC-CCCEEEEEeCCCcEEEEeCCCCeEEE----EecccC-CcceEEEEEecCCCCcEEEE
Q 004477 39 RLSQERELEGHQGCVNAISWNS-KGSLLISGSDDTHINVWSYSSRKLLH----SIETGH-SANVFCTKFVPETSDELVVS 112 (751)
Q Consensus 39 ~~~~~~~L~gH~~~V~~l~~s~-dg~~LaSgs~Dg~I~IWd~~~~~~~~----~l~~~h-~~~V~~v~fsp~s~~~~l~s 112 (751)
+-+-+..|.+|.+.|+.+.|+| +..+||+||.|..|+||.+..+-... .+..+| .-.|-|+.|+|.. +.++++
T Consensus 68 ~~r~i~~l~~H~d~VtDl~FspF~D~LLAT~S~D~~VKiW~lp~g~~q~LSape~~~g~~~~~vE~l~fHpTa-Dgil~s 146 (1012)
T KOG1445|consen 68 RTRDIGILAAHGDQVTDLGFSPFADELLATCSRDEPVKIWKLPRGHSQKLSAPEIDVGGGNVIVECLRFHPTA-DGILAS 146 (1012)
T ss_pred cccccceeecccceeeccCccccchhhhhcccCCCeeEEEecCCCcccccCCcceeecCCceEEEEeecccCc-CceEEe
Confidence 3346678899999999999999 56699999999999999987442111 111244 4568899999997 567777
Q ss_pred EECCCcEEEEECCCCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCCCCCCCCCCc
Q 004477 113 GAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQE 192 (751)
Q Consensus 113 gs~Dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~~~~~~~~ 192 (751)
++ -|+|+|||+.+. +.+..+.+|.+.|.++.|+. ++.+++++..|+.|+|||.|..-.......+|..
T Consensus 147 ~a-~g~v~i~D~stq----------k~~~el~~h~d~vQSa~Wse-DG~llatscKdkqirifDPRa~~~piQ~te~H~~ 214 (1012)
T KOG1445|consen 147 GA-HGSVYITDISTQ----------KTAVELSGHTDKVQSADWSE-DGKLLATSCKDKQIRIFDPRASMEPIQTTEGHGG 214 (1012)
T ss_pred cc-CceEEEEEcccC----------ceeecccCCchhhhcccccc-CCceEeeecCCcceEEeCCccCCCcccccccccc
Confidence 65 589999999975 56888999999999999998 7899999999999999999986433222121111
Q ss_pred cceEEEecccCceecccCCCCCccceEEEEEeCCCCcEEEEEeCC----CeEEEEeCCCCC-CccccCCCCCCCCccccc
Q 004477 193 CRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSD----AFARLYDRRMLP-PLTSCQKRMSPPPCVNYF 267 (751)
Q Consensus 193 ~~~~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D----~~IriwD~~~~~-~~~~~~~~~~~~~~~~~~ 267 (751)
. .=..+.|-.+ -+.|++.+.+ ..|++||.+... ++.++. +
T Consensus 215 ~-----------------------rdsRv~w~Gn-~~rlisTGF~~~R~reV~~~Dtr~f~~p~~tle-----------l 259 (1012)
T KOG1445|consen 215 M-----------------------RDSRVLWAGN-WERLISTGFTTKRIREVRAYDTRKFGAPVHTLE-----------L 259 (1012)
T ss_pred c-----------------------hhheeeeccc-hhhhhhcccchhhheeeeeeeccccCCcceeEE-----------e
Confidence 1 1112344432 1234444433 578999998653 222111 0
Q ss_pred cccccccCCccccceEEEEEcCCCCEEEEEe-CCCcEEEEECCCC
Q 004477 268 CPMHLSEHGRSSLHLTHVTFSPNGEEVLLSY-SGEHVYLMDVNHA 311 (751)
Q Consensus 268 ~~~~~~~~g~~~~~vt~v~fspdg~~Ll~~s-~d~~I~lwdl~~~ 311 (751)
.....|.---|.||.+.|+.++ ++.+++.+.+...
T Consensus 260 ---------d~stGvLiPl~DpDt~llfLaGKG~~~l~~lE~~d~ 295 (1012)
T KOG1445|consen 260 ---------DSSTGVLIPLYDPDTRLLFLAGKGTNKLFMLEMQDR 295 (1012)
T ss_pred ---------ecccceEeeeecCCCceEEEecCCcceEEEEEecCC
Confidence 1111255557899988776555 5889999999874
No 162
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.70 E-value=1.3e-15 Score=149.41 Aligned_cols=266 Identities=14% Similarity=0.177 Sum_probs=182.9
Q ss_pred cccccccchhhhccccccEEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEecccCCcceEEEEEecCC
Q 004477 26 VNHSLQMHSSLVRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPET 105 (751)
Q Consensus 26 ~~~~l~~~~~~i~~~~~~~~L~gH~~~V~~l~~s~dg~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~s 105 (751)
.+.++-+|+.. +..+.+.|.+|..+|.+|+||++|+.|+|+|.|..|++||+..|.+++.+ ....+|+.+.|+|..
T Consensus 43 ~nG~vvI~D~~--T~~iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~l~ri--rf~spv~~~q~hp~k 118 (405)
T KOG1273|consen 43 ANGRVVIYDFD--TFRIARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSPLKRI--RFDSPVWGAQWHPRK 118 (405)
T ss_pred cCCcEEEEEcc--ccchhhhhhccccceeEEEecCCCCEeeeecCCceeEEEeccCCCceeEE--EccCccceeeecccc
Confidence 35667777644 44578899999999999999999999999999999999999999998888 467899999999986
Q ss_pred CCcEEEEEECCCcEEEEECCCCCCCCCCCCCCCCceeecccCCc-eeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCCC
Q 004477 106 SDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRR-VKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCP 184 (751)
Q Consensus 106 ~~~~l~sgs~Dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~-V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~ 184 (751)
.+..+.+-.+..-.+-++..+...++.... .+..+. -.+..|.+ .|+++++|...|.+.++|..+-+...
T Consensus 119 -~n~~va~~~~~sp~vi~~s~~~h~~Lp~d~-------d~dln~sas~~~fdr-~g~yIitGtsKGkllv~~a~t~e~va 189 (405)
T KOG1273|consen 119 -RNKCVATIMEESPVVIDFSDPKHSVLPKDD-------DGDLNSSASHGVFDR-RGKYIITGTSKGKLLVYDAETLECVA 189 (405)
T ss_pred -CCeEEEEEecCCcEEEEecCCceeeccCCC-------ccccccccccccccC-CCCEEEEecCcceEEEEecchheeee
Confidence 455555555665666666643222210000 001111 12224666 77899999999999999998865320
Q ss_pred CCCCCCCccceEEEecccCceecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCccccCCCCCCCCcc
Q 004477 185 PAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCV 264 (751)
Q Consensus 185 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~~~~~~~~~~~~~~ 264 (751)
.+ + + .....|+.+.|+. .++.|+.-+.|..||.|+++..-.... ...+...
T Consensus 190 -----------s~---r------i----ts~~~IK~I~~s~-~g~~liiNtsDRvIR~ye~~di~~~~r----~~e~e~~ 240 (405)
T KOG1273|consen 190 -----------SF---R------I----TSVQAIKQIIVSR-KGRFLIINTSDRVIRTYEISDIDDEGR----DGEVEPE 240 (405)
T ss_pred -----------ee---e------e----chheeeeEEEEec-cCcEEEEecCCceEEEEehhhhcccCc----cCCcChh
Confidence 00 0 0 0124688888888 589999999999999999985432110 0001111
Q ss_pred ccccccccccCCccccceEEEEEcCCCCEEEEEeC-CCcEEEEECCCCCcceeeeecC-CCceeEEeCCCCCCcccC
Q 004477 265 NYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYS-GEHVYLMDVNHAGGRAMRYTVG-DASKIMSFTPTLNGLELQ 339 (751)
Q Consensus 265 ~~~~~~~~~~~g~~~~~vt~v~fspdg~~Ll~~s~-d~~I~lwdl~~~~~~~~~~~~~-~~~~~~~~sp~~~~~~~~ 339 (751)
+.+... .. ...-.+++||.+|.|+++++. -..+|||.-..|.......+.. +....+.|+|....++.-
T Consensus 241 ~K~qDv--VN----k~~Wk~ccfs~dgeYv~a~s~~aHaLYIWE~~~GsLVKILhG~kgE~l~DV~whp~rp~i~si 311 (405)
T KOG1273|consen 241 HKLQDV--VN----KLQWKKCCFSGDGEYVCAGSARAHALYIWEKSIGSLVKILHGTKGEELLDVNWHPVRPIIASI 311 (405)
T ss_pred HHHHHH--Hh----hhhhhheeecCCccEEEeccccceeEEEEecCCcceeeeecCCchhheeecccccceeeeeec
Confidence 111111 00 113678999999999998886 5789999999987776666554 666677888876655433
No 163
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.70 E-value=6e-16 Score=158.75 Aligned_cols=263 Identities=16% Similarity=0.150 Sum_probs=183.4
Q ss_pred cccccchhh--hccccccEEeccCCCcEEEEEECCC-CCEEEEEeCCCcEEEEeCCCCeEEEEec-ccCCcceEEEEEec
Q 004477 28 HSLQMHSSL--VRRLSQERELEGHQGCVNAISWNSK-GSLLISGSDDTHINVWSYSSRKLLHSIE-TGHSANVFCTKFVP 103 (751)
Q Consensus 28 ~~l~~~~~~--i~~~~~~~~L~gH~~~V~~l~~s~d-g~~LaSgs~Dg~I~IWd~~~~~~~~~l~-~~h~~~V~~v~fsp 103 (751)
.++-+|.-- .....-+..+..|.++|++|.|+|. -..+.+.|.||+|++=|++.......+. ..-...+.++.|+.
T Consensus 210 G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDGtiR~~D~~~~i~e~v~s~~~d~~~fs~~d~~~ 289 (498)
T KOG4328|consen 210 GQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIYSSSYDGTIRLQDFEGNISEEVLSLDTDNIWFSSLDFSA 289 (498)
T ss_pred CcEEEEecCCCCCccCceEEeccCCccccceEecCCChhheeeeccCceeeeeeecchhhHHHhhcCccceeeeeccccC
Confidence 344555432 3444556778899999999999994 4689999999999999998664322221 12345566778887
Q ss_pred CCCCcEEEEEECCCcEEEEECCCCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCC
Q 004477 104 ETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSC 183 (751)
Q Consensus 104 ~s~~~~l~sgs~Dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~ 183 (751)
+ ...++.+..=|...+||+++.. .....+.-|...|.+|+++|..+.+|+|+|.|++++|||+|.-...
T Consensus 290 e--~~~vl~~~~~G~f~~iD~R~~~---------s~~~~~~lh~kKI~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K 358 (498)
T KOG4328|consen 290 E--SRSVLFGDNVGNFNVIDLRTDG---------SEYENLRLHKKKITSVALNPVCPWFLATASLDQTAKIWDLRQLRGK 358 (498)
T ss_pred C--CccEEEeecccceEEEEeecCC---------ccchhhhhhhcccceeecCCCCchheeecccCcceeeeehhhhcCC
Confidence 7 5667777777799999999752 2244556688899999999999999999999999999999985422
Q ss_pred CCCCCCCCccceEEEecccCceecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCC----CCCCccccCCCCC
Q 004477 184 PPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRR----MLPPLTSCQKRMS 259 (751)
Q Consensus 184 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~----~~~~~~~~~~~~~ 259 (751)
.. -++. .-.|...|.+..|+|.++. |++.+.|..|||||.. ...+...+..
T Consensus 359 ~s---------p~ls------------t~~HrrsV~sAyFSPs~gt-l~TT~~D~~IRv~dss~~sa~~~p~~~I~H--- 413 (498)
T KOG4328|consen 359 AS---------PFLS------------TLPHRRSVNSAYFSPSGGT-LLTTCQDNEIRVFDSSCISAKDEPLGTIPH--- 413 (498)
T ss_pred CC---------ccee------------cccccceeeeeEEcCCCCc-eEeeccCCceEEeecccccccCCccceeec---
Confidence 10 0111 1237788999999998776 9999999999999984 3333222211
Q ss_pred CCCccccccccccccCCccccceEEEEEcCCCCEEEEEeCCCcEEEEECCCCCcceeeeec--CCCceeEEeCCCCCCcc
Q 004477 260 PPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTV--GDASKIMSFTPTLNGLE 337 (751)
Q Consensus 260 ~~~~~~~~~~~~~~~~g~~~~~vt~v~fspdg~~Ll~~s~d~~I~lwdl~~~~~~~~~~~~--~~~~~~~~~sp~~~~~~ 337 (751)
-...+..- ..-...|.|+..++++|-.-..|-|||-+.++........ .....+..|+|..+++.
T Consensus 414 ------------n~~t~Rwl-T~fKA~W~P~~~li~vg~~~r~IDv~~~~~~q~v~el~~P~~~tI~~vn~~HP~~~~~~ 480 (498)
T KOG4328|consen 414 ------------NNRTGRWL-TPFKAAWDPDYNLIVVGRYPRPIDVFDGNGGQMVCELHDPESSTIPSVNEFHPMRDTLA 480 (498)
T ss_pred ------------cCcccccc-cchhheeCCCccEEEEeccCcceeEEcCCCCEEeeeccCccccccccceeeccccccee
Confidence 11111111 1344689999999999999999999998885422222221 23445567888877655
Q ss_pred cC
Q 004477 338 LQ 339 (751)
Q Consensus 338 ~~ 339 (751)
..
T Consensus 481 aG 482 (498)
T KOG4328|consen 481 AG 482 (498)
T ss_pred cc
Confidence 44
No 164
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.69 E-value=6.9e-16 Score=155.47 Aligned_cols=179 Identities=20% Similarity=0.233 Sum_probs=144.0
Q ss_pred ccCCcceEEEEEecCCCCcEEEEEECCCcEEEEECCCCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCC
Q 004477 90 TGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASED 169 (751)
Q Consensus 90 ~~h~~~V~~v~fsp~s~~~~l~sgs~Dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~D 169 (751)
.||+++|..++|+|.. +..|||||.|.+|.||.+-.... ...-.+++..+.+|..+|--++|+|.-.++|+|+|.|
T Consensus 78 ~GHt~~vLDi~w~Pfn-D~vIASgSeD~~v~vW~IPe~~l---~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~D 153 (472)
T KOG0303|consen 78 CGHTAPVLDIDWCPFN-DCVIASGSEDTKVMVWQIPENGL---TRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSD 153 (472)
T ss_pred cCccccccccccCccC-CceeecCCCCceEEEEECCCccc---ccCcccceEEEeecceeEEEEeecccchhhHhhccCC
Confidence 6999999999999996 78999999999999999975311 1122377899999999999999999888999999999
Q ss_pred CcEEEEecCCCCCCCCCCCCCCccceEEEecccCceecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCC
Q 004477 170 GTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLP 249 (751)
Q Consensus 170 g~I~iwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~ 249 (751)
.+|.+||+.+++.. +. . .|...|.+++|+. ++.+|++.+.|..|||||.|+++
T Consensus 154 n~v~iWnv~tgeal--------------i~-----------l-~hpd~i~S~sfn~-dGs~l~TtckDKkvRv~dpr~~~ 206 (472)
T KOG0303|consen 154 NTVSIWNVGTGEAL--------------IT-----------L-DHPDMVYSMSFNR-DGSLLCTTCKDKKVRVIDPRRGT 206 (472)
T ss_pred ceEEEEeccCCcee--------------ee-----------c-CCCCeEEEEEecc-CCceeeeecccceeEEEcCCCCc
Confidence 99999999998733 11 1 1778899999999 58999999999999999999987
Q ss_pred CccccCCCCCCCCccccccccccccCCccccceEEEEEcCCCCEEEEEeC---CCcEEEEECCCCCcceeeee
Q 004477 250 PLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYS---GEHVYLMDVNHAGGRAMRYT 319 (751)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~vt~v~fspdg~~Ll~~s~---d~~I~lwdl~~~~~~~~~~~ 319 (751)
.+..- .+|.+..-..+.|-.+|..+-+|.+ +.++-|||..+...+.....
T Consensus 207 ~v~e~--------------------~~heG~k~~Raifl~~g~i~tTGfsr~seRq~aLwdp~nl~eP~~~~e 259 (472)
T KOG0303|consen 207 VVSEG--------------------VAHEGAKPARAIFLASGKIFTTGFSRMSERQIALWDPNNLEEPIALQE 259 (472)
T ss_pred Eeeec--------------------ccccCCCcceeEEeccCceeeeccccccccceeccCcccccCcceeEE
Confidence 65431 2344445667889999995555543 78999999888665544443
No 165
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.69 E-value=4.7e-15 Score=156.39 Aligned_cols=252 Identities=13% Similarity=0.157 Sum_probs=167.9
Q ss_pred ccccccchhhhccccccEEeccCCCcEEEEEECCCCCEE-EEEeCCCcEEEEeCCCCeEEEEecccCCcceEEEEEecCC
Q 004477 27 NHSLQMHSSLVRRLSQERELEGHQGCVNAISWNSKGSLL-ISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPET 105 (751)
Q Consensus 27 ~~~l~~~~~~i~~~~~~~~L~gH~~~V~~l~~s~dg~~L-aSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~s 105 (751)
+..+.+|+. .+.++.+.+.+|.. +.++.|+|+|+.| ++++.|+.|++||..+++.+..+ ..+. .+..+.|+|+
T Consensus 10 d~~v~~~d~--~t~~~~~~~~~~~~-~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~-~~~~-~~~~~~~~~~- 83 (300)
T TIGR03866 10 DNTISVIDT--ATLEVTRTFPVGQR-PRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTL-PSGP-DPELFALHPN- 83 (300)
T ss_pred CCEEEEEEC--CCCceEEEEECCCC-CCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEec-cCCC-CccEEEECCC-
Confidence 455666653 34556777876654 6789999999976 67788999999999998887776 3343 3567899999
Q ss_pred CCcEE-EEEECCCcEEEEECCCCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCC-cEEEEecCCCCCC
Q 004477 106 SDELV-VSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDG-TLRQHDFRQGSSC 183 (751)
Q Consensus 106 ~~~~l-~sgs~Dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg-~I~iwDlr~~~~~ 183 (751)
++.+ ++++.|+.|++||+... +.+..+. +...+.+++|+| ++.++++++.++ .+..||.++++..
T Consensus 84 -g~~l~~~~~~~~~l~~~d~~~~----------~~~~~~~-~~~~~~~~~~~~-dg~~l~~~~~~~~~~~~~d~~~~~~~ 150 (300)
T TIGR03866 84 -GKILYIANEDDNLVTVIDIETR----------KVLAEIP-VGVEPEGMAVSP-DGKIVVNTSETTNMAHFIDTKTYEIV 150 (300)
T ss_pred -CCEEEEEcCCCCeEEEEECCCC----------eEEeEee-CCCCcceEEECC-CCCEEEEEecCCCeEEEEeCCCCeEE
Confidence 5655 45567899999999863 2244443 233467899999 667888887765 4667898765421
Q ss_pred CCCCCCCCccceEEEecccCceecccCCCCCccceEEEEEeCCCCcEE-EEEeCCCeEEEEeCCCCCCccccCCCCCCCC
Q 004477 184 PPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLL-LVGGSDAFARLYDRRMLPPLTSCQKRMSPPP 262 (751)
Q Consensus 184 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l-~sgs~D~~IriwD~~~~~~~~~~~~~~~~~~ 262 (751)
.... ......+++|+|+ +.++ +++..++.|++||+.+.+.+..+....
T Consensus 151 --------------~~~~------------~~~~~~~~~~s~d-g~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~---- 199 (300)
T TIGR03866 151 --------------DNVL------------VDQRPRFAEFTAD-GKELWVSSEIGGTVSVIDVATRKVIKKITFEI---- 199 (300)
T ss_pred --------------EEEE------------cCCCccEEEECCC-CCEEEEEcCCCCEEEEEEcCcceeeeeeeecc----
Confidence 0000 0123457899996 5655 455579999999999875433221000
Q ss_pred ccccccccccccCCccccceEEEEEcCCCCEEEEE-eCCCcEEEEECCCCCcceeeeecCCCceeEEeCCCCCCcccC
Q 004477 263 CVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLS-YSGEHVYLMDVNHAGGRAMRYTVGDASKIMSFTPTLNGLELQ 339 (751)
Q Consensus 263 ~~~~~~~~~~~~~g~~~~~vt~v~fspdg~~Ll~~-s~d~~I~lwdl~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~ 339 (751)
+. .. ........++|+|+|++++++ +.++.|.+||+.+++.. .....++.+..++|+|+...+...
T Consensus 200 ------~~-~~---~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~~~~~-~~~~~~~~~~~~~~~~~g~~l~~~ 266 (300)
T TIGR03866 200 ------PG-VH---PEAVQPVGIKLTKDGKTAFVALGPANRVAVVDAKTYEVL-DYLLVGQRVWQLAFTPDEKYLLTT 266 (300)
T ss_pred ------cc-cc---cccCCccceEECCCCCEEEEEcCCCCeEEEEECCCCcEE-EEEEeCCCcceEEECCCCCEEEEE
Confidence 00 00 001124578999999987665 45778999999875433 233445677889999988766543
No 166
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.67 E-value=4.6e-15 Score=165.40 Aligned_cols=216 Identities=16% Similarity=0.285 Sum_probs=149.6
Q ss_pred cCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEeccc--CCcceEEEEEecCCCCcEEEEEECCCcEEEEECC
Q 004477 48 GHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETG--HSANVFCTKFVPETSDELVVSGAGDAEVRLFNLS 125 (751)
Q Consensus 48 gH~~~V~~l~~s~dg~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~--h~~~V~~v~fsp~s~~~~l~sgs~Dg~V~vwd~~ 125 (751)
+..+.-..+.|+|-...++++.+.-.|+|||.+.++.+..|..+ ....|+.+.+..+.+..++++|+.||.||||+-.
T Consensus 1062 ~n~~~pk~~~~hpf~p~i~~ad~r~~i~vwd~e~~~~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y 1141 (1387)
T KOG1517|consen 1062 GNNQPPKTLKFHPFEPQIAAADDRERIRVWDWEKGRLLNGFDNGAFPDTRVSDLELINEQDDALLLTASSDGVIRIWKDY 1141 (1387)
T ss_pred cCCCCCceeeecCCCceeEEcCCcceEEEEecccCceeccccCCCCCCCccceeeeecccchhheeeeccCceEEEeccc
Confidence 33445667888998889999987789999999999988877433 2467999999887667899999999999999865
Q ss_pred CCCCCCCCCCCCCCceeec-------ccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCCCCCCCCCCccceEEE
Q 004477 126 RFSGRGLDDNAITPSALYQ-------CHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILL 198 (751)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~-------~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~~~~~~~~~~~~l~ 198 (751)
...... .+.+..+. +-.+.=.-+.|....|++++ +|+-..|||||......+ .
T Consensus 1142 ~~~~~~-----~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~-tGd~r~IRIWDa~~E~~~--------------~ 1201 (1387)
T KOG1517|consen 1142 ADKWKK-----PELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLV-TGDVRSIRIWDAHKEQVV--------------A 1201 (1387)
T ss_pred ccccCC-----ceeEEeeccccccCccCCCCCeeeehhhhCCeEEe-cCCeeEEEEEecccceeE--------------e
Confidence 421111 02222211 11122234578776766664 455789999999876533 1
Q ss_pred ecccCceecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCccccCCCCCCCCccccccccccccCCcc
Q 004477 199 DLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRS 278 (751)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 278 (751)
+.-. +....|+++.-+-..++.|++|..||.||+||.|+..+-. .+..+ +.|.
T Consensus 1202 diP~----------~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds----------~v~~~-------R~h~ 1254 (1387)
T KOG1517|consen 1202 DIPY----------GSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDS----------LVCVY-------REHN 1254 (1387)
T ss_pred eccc----------CCCccceeecccccCCceEEEeecCCceEEeecccCCccc----------cceee-------cccC
Confidence 1111 1344577776666668999999999999999999754311 01111 1122
Q ss_pred c-cceEEEEEcCCCC-EEEEEeCCCcEEEEECCC
Q 004477 279 S-LHLTHVTFSPNGE-EVLLSYSGEHVYLMDVNH 310 (751)
Q Consensus 279 ~-~~vt~v~fspdg~-~Ll~~s~d~~I~lwdl~~ 310 (751)
. .+|..+.+.+.|- .|++|+.+|.|++||++.
T Consensus 1255 ~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~ 1288 (1387)
T KOG1517|consen 1255 DVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRM 1288 (1387)
T ss_pred CcccceeEEeecCCCcceeeeccCCeEEEEeccc
Confidence 1 1388999999775 499999999999999988
No 167
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.67 E-value=1.5e-15 Score=156.69 Aligned_cols=212 Identities=18% Similarity=0.229 Sum_probs=168.1
Q ss_pred cccccccccchhhhccccccEEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEecccCCcceEEEEEec
Q 004477 24 PDVNHSLQMHSSLVRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVP 103 (751)
Q Consensus 24 ~~~~~~l~~~~~~i~~~~~~~~L~gH~~~V~~l~~s~dg~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp 103 (751)
....+.+++|+-. +-.+.+.|++|+..|+++.++....+||+++..|.|+|..+.++.....|..+....|.-++|+|
T Consensus 97 gG~~~~Vkiwdl~--~kl~hr~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~tt~f~~~sgqsvRll~ys~ 174 (673)
T KOG4378|consen 97 GGQSGCVKIWDLR--AKLIHRFLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQKTTTFTIDSGQSVRLLRYSP 174 (673)
T ss_pred cCcCceeeehhhH--HHHHhhhccCCcceeEEEEecCCcceeEEeccCCcEEEEecccCccccceecCCCCeEEEeeccc
Confidence 3456778888755 44467889999999999999999999999999999999999998887777444456677999999
Q ss_pred CCCCcEEEEEECCCcEEEEECCCCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCC
Q 004477 104 ETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSC 183 (751)
Q Consensus 104 ~s~~~~l~sgs~Dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~ 183 (751)
.. -.+|.+++.+|.|.+||+.... ........|..+...|+|+|.+..+|++.|.|+.|.+||++.....
T Consensus 175 sk-r~lL~~asd~G~VtlwDv~g~s---------p~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~ 244 (673)
T KOG4378|consen 175 SK-RFLLSIASDKGAVTLWDVQGMS---------PIFHASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQAST 244 (673)
T ss_pred cc-ceeeEeeccCCeEEEEeccCCC---------cccchhhhccCCcCcceecCCccceEEEecccceEEEeeccccccc
Confidence 85 5677899999999999998532 2244567899999999999999999999999999999999975532
Q ss_pred CCCCCCCCccceEEEecccCceecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCC-CccccCCCCCCCC
Q 004477 184 PPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLP-PLTSCQKRMSPPP 262 (751)
Q Consensus 184 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~-~~~~~~~~~~~~~ 262 (751)
.. +. ...+...++|.+ ++.+|+.|...|.|..||+|+.+ |+...
T Consensus 245 ~~----------l~----------------y~~Plstvaf~~-~G~~L~aG~s~G~~i~YD~R~~k~Pv~v~-------- 289 (673)
T KOG4378|consen 245 DR----------LT----------------YSHPLSTVAFSE-CGTYLCAGNSKGELIAYDMRSTKAPVAVR-------- 289 (673)
T ss_pred ce----------ee----------------ecCCcceeeecC-CceEEEeecCCceEEEEecccCCCCceEe--------
Confidence 10 11 235788999999 58999999999999999999764 22111
Q ss_pred ccccccccccccCCccccceEEEEEcCCCCEEEE
Q 004477 263 CVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLL 296 (751)
Q Consensus 263 ~~~~~~~~~~~~~g~~~~~vt~v~fspdg~~Ll~ 296 (751)
..|.. .|++|+|-|.- .+++
T Consensus 290 ------------sah~~-sVt~vafq~s~-tvlt 309 (673)
T KOG4378|consen 290 ------------SAHDA-SVTRVAFQPSP-TVLT 309 (673)
T ss_pred ------------eeccc-ceeEEEeeecc-eeee
Confidence 23444 49999998876 3443
No 168
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.67 E-value=1.3e-15 Score=147.63 Aligned_cols=215 Identities=20% Similarity=0.261 Sum_probs=154.6
Q ss_pred cEEeccCCCcEEEEEECC-CCCEEEEEeCC-------CcEEEEeCCCC---------eEEEEecccCCcceEEEEEecCC
Q 004477 43 ERELEGHQGCVNAISWNS-KGSLLISGSDD-------THINVWSYSSR---------KLLHSIETGHSANVFCTKFVPET 105 (751)
Q Consensus 43 ~~~L~gH~~~V~~l~~s~-dg~~LaSgs~D-------g~I~IWd~~~~---------~~~~~l~~~h~~~V~~v~fsp~s 105 (751)
.+.|..|-|+|+.|+-+| +.++|+|+-.| ..+-||.+... +++..+.+.+-+.|.||.|.|+
T Consensus 56 skvf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~Ldteavg~i~cvew~Pn- 134 (370)
T KOG1007|consen 56 SKVFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVASLDTEAVGKINCVEWEPN- 134 (370)
T ss_pred hhhhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhcCCHHHhCceeeEEEcCC-
Confidence 356778999999999999 45677776442 24779987532 3444555567789999999998
Q ss_pred CCcEEEEEECCCcEEEEECCCCCCCCCCCCCCCCceeecccCCceeEEEEec-CCCCEEEEEeCCCcEEEEecCCCCCCC
Q 004477 106 SDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEV-GNPHVVWSASEDGTLRQHDFRQGSSCP 184 (751)
Q Consensus 106 ~~~~l~sgs~Dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp-~~~~~l~s~s~Dg~I~iwDlr~~~~~~ 184 (751)
+..+++-. |..|.+|++..+..... .-+...-..|....++-+|+| .+++.+++ ..|+++..||+|+.+..
T Consensus 135 -s~klasm~-dn~i~l~~l~ess~~va----ev~ss~s~e~~~~ftsg~WspHHdgnqv~t-t~d~tl~~~D~RT~~~~- 206 (370)
T KOG1007|consen 135 -SDKLASMD-DNNIVLWSLDESSKIVA----EVLSSESAEMRHSFTSGAWSPHHDGNQVAT-TSDSTLQFWDLRTMKKN- 206 (370)
T ss_pred -CCeeEEec-cCceEEEEcccCcchhe----eecccccccccceecccccCCCCccceEEE-eCCCcEEEEEccchhhh-
Confidence 56777654 89999999987543210 011112223677788899999 56677754 56799999999987532
Q ss_pred CCCCCCCccceEEEecccCceecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCC-CccccCCCCCCCCc
Q 004477 185 PAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLP-PLTSCQKRMSPPPC 263 (751)
Q Consensus 185 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~-~~~~~~~~~~~~~~ 263 (751)
......|...|..++|+|+...+|++|+.||.|||||.|+.+ ++.++
T Consensus 207 -----------------------~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el--------- 254 (370)
T KOG1007|consen 207 -----------------------NSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQEL--------- 254 (370)
T ss_pred -----------------------cchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCcccccc---------
Confidence 111122556789999999988999999999999999999764 22111
Q ss_pred cccccccccccCCccccceEEEEEcCCC-CEEEEEeCCCcEEEEECCC
Q 004477 264 VNYFCPMHLSEHGRSSLHLTHVTFSPNG-EEVLLSYSGEHVYLMDVNH 310 (751)
Q Consensus 264 ~~~~~~~~~~~~g~~~~~vt~v~fspdg-~~Ll~~s~d~~I~lwdl~~ 310 (751)
.+|.. +|.+|.|+|.- +.|+++++|..|.||-...
T Consensus 255 -----------~~HsH-WvW~VRfn~~hdqLiLs~~SDs~V~Lsca~s 290 (370)
T KOG1007|consen 255 -----------PGHSH-WVWAVRFNPEHDQLILSGGSDSAVNLSCASS 290 (370)
T ss_pred -----------CCCce-EEEEEEecCccceEEEecCCCceeEEEeccc
Confidence 23443 79999999965 4677888899999997655
No 169
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.65 E-value=5e-15 Score=150.11 Aligned_cols=142 Identities=20% Similarity=0.339 Sum_probs=114.9
Q ss_pred ccccccccchhhh-------ccccccEEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCC--------C-----C--
Q 004477 25 DVNHSLQMHSSLV-------RRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYS--------S-----R-- 82 (751)
Q Consensus 25 ~~~~~l~~~~~~i-------~~~~~~~~L~gH~~~V~~l~~s~dg~~LaSgs~Dg~I~IWd~~--------~-----~-- 82 (751)
..+..+++|.-.. .+++....|..|...||++.|+|+|.+||||+++|.|.+|-.. + .
T Consensus 33 G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lWk~~~~~~~~~d~e~~~~ke~ 112 (434)
T KOG1009|consen 33 GGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFLWKQGDVRIFDADTEADLNKEK 112 (434)
T ss_pred cCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeeecCCCceEEEEEecCcCCccccchhhhCccc
Confidence 3455566664321 3556677899999999999999999999999999999999765 2 1
Q ss_pred eEEEEecccCCcceEEEEEecCCCCcEEEEEECCCcEEEEECCCCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCE
Q 004477 83 KLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHV 162 (751)
Q Consensus 83 ~~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~Dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~ 162 (751)
-.+.....+|...|..++|+|+ +.++++++.|.++++||+..+ .....+..|...|..++|.| -..+
T Consensus 113 w~v~k~lr~h~~diydL~Ws~d--~~~l~s~s~dns~~l~Dv~~G----------~l~~~~~dh~~yvqgvawDp-l~qy 179 (434)
T KOG1009|consen 113 WVVKKVLRGHRDDIYDLAWSPD--SNFLVSGSVDNSVRLWDVHAG----------QLLAILDDHEHYVQGVAWDP-LNQY 179 (434)
T ss_pred eEEEEEecccccchhhhhccCC--CceeeeeeccceEEEEEeccc----------eeEeeccccccccceeecch-hhhh
Confidence 1233334789999999999999 799999999999999999975 55788899999999999999 5578
Q ss_pred EEEEeCCCcEEEEecCC
Q 004477 163 VWSASEDGTLRQHDFRQ 179 (751)
Q Consensus 163 l~s~s~Dg~I~iwDlr~ 179 (751)
+++-+.|...+.+.+..
T Consensus 180 v~s~s~dr~~~~~~~~~ 196 (434)
T KOG1009|consen 180 VASKSSDRHPEGFSAKL 196 (434)
T ss_pred hhhhccCcccceeeeee
Confidence 88888888666665544
No 170
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.64 E-value=1.4e-13 Score=152.32 Aligned_cols=237 Identities=19% Similarity=0.257 Sum_probs=180.3
Q ss_pred cccccchhhhccccccEEeccCCCcEEEEEECCCC---CEEEEEeCCCcEEEEeCCCCeEEEEec---------------
Q 004477 28 HSLQMHSSLVRRLSQERELEGHQGCVNAISWNSKG---SLLISGSDDTHINVWSYSSRKLLHSIE--------------- 89 (751)
Q Consensus 28 ~~l~~~~~~i~~~~~~~~L~gH~~~V~~l~~s~dg---~~LaSgs~Dg~I~IWd~~~~~~~~~l~--------------- 89 (751)
..+++++ ..+..+++.|++|...+..+.+.|.. .++.+++.||.|++||...+.++.++.
T Consensus 37 ~~V~VyS--~~Tg~~i~~l~~~~a~l~s~~~~~~~~~~~~~~~~sl~G~I~vwd~~~~~Llkt~~~~~~v~~~~~~~~~a 114 (792)
T KOG1963|consen 37 NFVKVYS--TATGECITSLEDHTAPLTSVIVLPSSENANYLIVCSLDGTIRVWDWSDGELLKTFDNNLPVHALVYKPAQA 114 (792)
T ss_pred CEEEEEe--cchHhhhhhcccccCccceeeecCCCccceEEEEEecCccEEEecCCCcEEEEEEecCCceeEEEechhHh
Confidence 4445544 45667888999999999999998854 477899999999999987765544331
Q ss_pred --------------------------------------------------------------------------------
Q 004477 90 -------------------------------------------------------------------------------- 89 (751)
Q Consensus 90 -------------------------------------------------------------------------------- 89 (751)
T Consensus 115 ~~s~~~~~s~~~~~~~~~~s~~~~~q~~~~~~~t~~~~~~d~~~~~~~~~~I~~~~~ge~~~i~~~~~~~~~~v~~~~~~ 194 (792)
T KOG1963|consen 115 DISANVYVSVEDYSILTTFSKKLSKQSSRFVLATFDSAKGDFLKEHQEPKSIVDNNSGEFKGIVHMCKIHIYFVPKHTKH 194 (792)
T ss_pred CccceeEeecccceeeeecccccccceeeeEeeeccccchhhhhhhcCCccEEEcCCceEEEEEEeeeEEEEEeccccee
Confidence
Q ss_pred -------ccCCcceEEEEEecCCCCcEEEEEECCCcEEEEECCCCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCE
Q 004477 90 -------TGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHV 162 (751)
Q Consensus 90 -------~~h~~~V~~v~fsp~s~~~~l~sgs~Dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~ 162 (751)
..|.-+++|++++|+ ++++++|..||.|.||.--..+.. ......+.-|...|.+++|++ +|.+
T Consensus 195 ~~~~~~~~~Htf~~t~~~~spn--~~~~Aa~d~dGrI~vw~d~~~~~~------~~t~t~lHWH~~~V~~L~fS~-~G~~ 265 (792)
T KOG1963|consen 195 TSSRDITVHHTFNITCVALSPN--ERYLAAGDSDGRILVWRDFGSSDD------SETCTLLHWHHDEVNSLSFSS-DGAY 265 (792)
T ss_pred eccchhhhhhcccceeEEeccc--cceEEEeccCCcEEEEeccccccc------cccceEEEecccccceeEEec-CCce
Confidence 236667889999999 899999999999999975431111 133567788999999999999 6678
Q ss_pred EEEEeCCCcEEEEecCCCCCCCCCCCCCCccceEEEecccCceecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEE
Q 004477 163 VWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARL 242 (751)
Q Consensus 163 l~s~s~Dg~I~iwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~Iri 242 (751)
|.|||..|.+.+|.+.+++. ...|.-...|..+.++| ++.+.++...|+.|.+
T Consensus 266 LlSGG~E~VLv~Wq~~T~~k--------------------------qfLPRLgs~I~~i~vS~-ds~~~sl~~~DNqI~l 318 (792)
T KOG1963|consen 266 LLSGGREGVLVLWQLETGKK--------------------------QFLPRLGSPILHIVVSP-DSDLYSLVLEDNQIHL 318 (792)
T ss_pred EeecccceEEEEEeecCCCc--------------------------ccccccCCeeEEEEEcC-CCCeEEEEecCceEEE
Confidence 88999999999999998862 23344567899999999 5788899999999999
Q ss_pred EeCCCCCCccccCCCCCCCCccccccccccccCCccccceEEEEEcCCCCEEEEEeCCCcEEEEECCCCC
Q 004477 243 YDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAG 312 (751)
Q Consensus 243 wD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~vt~v~fspdg~~Ll~~s~d~~I~lwdl~~~~ 312 (751)
..+.++.....+++...+.+.. ..+..+ -.+.++++|.-+.++-++..++|.+||+.+..
T Consensus 319 i~~~dl~~k~tIsgi~~~~~~~---------k~~~~~-l~t~~~idpr~~~~vln~~~g~vQ~ydl~td~ 378 (792)
T KOG1963|consen 319 IKASDLEIKSTISGIKPPTPST---------KTRPQS-LTTGVSIDPRTNSLVLNGHPGHVQFYDLYTDS 378 (792)
T ss_pred EeccchhhhhhccCccCCCccc---------cccccc-cceeEEEcCCCCceeecCCCceEEEEeccccc
Confidence 9987776555544332221110 011122 37889999988889999999999999999854
No 171
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.63 E-value=1.3e-14 Score=144.25 Aligned_cols=199 Identities=13% Similarity=0.224 Sum_probs=151.9
Q ss_pred CEEEEEeCCCcEEEEeCCCCeEEEEecccCCcceEEEEEecCCCCcEEEEEECCCcEEEEECCCCCCCCCCCCCCCCcee
Q 004477 63 SLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSAL 142 (751)
Q Consensus 63 ~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~Dg~V~vwd~~~~~~~~~~~~~~~~~~~ 142 (751)
+.+|++-..|.|+|||..+++.+..+ ++|...++.++|.....+..+.+|+.||+|++||++.... .+...
T Consensus 41 ~~vav~lSngsv~lyd~~tg~~l~~f-k~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e--------~a~~~ 111 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGTGQLLEEF-KGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAE--------SARIS 111 (376)
T ss_pred eeEEEEecCCeEEEEeccchhhhhee-cCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchh--------hhhee
Confidence 57888889999999999999999999 8999999999999864478999999999999999997543 23445
Q ss_pred ecccC-CceeEEEEecCCCCEEEEEeC----CCcEEEEecCCCCCCCCCCCCCCccceEEEecccCceecccCCCCCccc
Q 004477 143 YQCHT-RRVKKLAVEVGNPHVVWSASE----DGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLS 217 (751)
Q Consensus 143 ~~~h~-~~V~~l~~sp~~~~~l~s~s~----Dg~I~iwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 217 (751)
+..|. .+-.+++... ..+++++|.+ |-.|.+||+|..+... -.....|...
T Consensus 112 ~~~~~~~~f~~ld~nc-k~~ii~~GtE~~~s~A~v~lwDvR~~qq~l-----------------------~~~~eSH~DD 167 (376)
T KOG1188|consen 112 WTQQSGTPFICLDLNC-KKNIIACGTELTRSDASVVLWDVRSEQQLL-----------------------RQLNESHNDD 167 (376)
T ss_pred ccCCCCCcceEeeccC-cCCeEEeccccccCceEEEEEEeccccchh-----------------------hhhhhhccCc
Confidence 55555 4455666554 5577777754 6689999999876420 1112347889
Q ss_pred eEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCccccCCCCCCCCccccccccccccCCccccceEEEEEcCCC-CEEEE
Q 004477 218 LKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNG-EEVLL 296 (751)
Q Consensus 218 v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~vt~v~fspdg-~~Ll~ 296 (751)
|+++.|+|.++++|++|+.||.|.|||+.....-.. .+..+ .....|..+.|..++ +.|.+
T Consensus 168 VT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~EeDa---------L~~vi---------N~~sSI~~igw~~~~ykrI~c 229 (376)
T KOG1188|consen 168 VTQLRFHPSDPNLLLSGSVDGLVNLFDTKKDNEEDA---------LLHVI---------NHGSSIHLIGWLSKKYKRIMC 229 (376)
T ss_pred ceeEEecCCCCCeEEeecccceEEeeecCCCcchhh---------HHHhh---------cccceeeeeeeecCCcceEEE
Confidence 999999999999999999999999999975421100 01111 112248999999988 45888
Q ss_pred EeCCCcEEEEECCCCC
Q 004477 297 SYSGEHVYLMDVNHAG 312 (751)
Q Consensus 297 ~s~d~~I~lwdl~~~~ 312 (751)
-+..+..++|+++.+.
T Consensus 230 lTH~Etf~~~ele~~~ 245 (376)
T KOG1188|consen 230 LTHMETFAIYELEDGS 245 (376)
T ss_pred EEccCceeEEEccCCC
Confidence 8899999999999964
No 172
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.63 E-value=9e-14 Score=157.70 Aligned_cols=227 Identities=18% Similarity=0.176 Sum_probs=157.4
Q ss_pred hhccccccEEeccCCCcEEEEEECCC-CCEEEEEeCCCcEEEEeCCCC-------eEEEEecccCCcceEEEEEecCCCC
Q 004477 36 LVRRLSQERELEGHQGCVNAISWNSK-GSLLISGSDDTHINVWSYSSR-------KLLHSIETGHSANVFCTKFVPETSD 107 (751)
Q Consensus 36 ~i~~~~~~~~L~gH~~~V~~l~~s~d-g~~LaSgs~Dg~I~IWd~~~~-------~~~~~l~~~h~~~V~~v~fsp~s~~ 107 (751)
+--+..++..|..|...|+.++.++. +.+++|||.||+|+|||...- +...++ ......+.++.+++. +
T Consensus 1034 W~p~G~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~lty-s~~~sr~~~vt~~~~--~ 1110 (1431)
T KOG1240|consen 1034 WNPRGILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTY-SPEGSRVEKVTMCGN--G 1110 (1431)
T ss_pred CCccceEeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEE-eccCCceEEEEeccC--C
Confidence 45677889999999999999999875 499999999999999997521 223333 235678999999998 7
Q ss_pred cEEEEEECCCcEEEEECCCCCCCCCCCCCCCCceeeccc-CCce-eEEEEecCCCC-EEEEEeCCCcEEEEecCCCCCCC
Q 004477 108 ELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCH-TRRV-KKLAVEVGNPH-VVWSASEDGTLRQHDFRQGSSCP 184 (751)
Q Consensus 108 ~~l~sgs~Dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h-~~~V-~~l~~sp~~~~-~l~s~s~Dg~I~iwDlr~~~~~~ 184 (751)
+.+|.++.||.|++.++......... .......+.+ .+.| ..-+|...... .++.+..-+.|..||+|.....
T Consensus 1111 ~~~Av~t~DG~v~~~~id~~~~~~~~---~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~- 1186 (1431)
T KOG1240|consen 1111 DQFAVSTKDGSVRVLRIDHYNVSKRV---ATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDA- 1186 (1431)
T ss_pred CeEEEEcCCCeEEEEEccccccccce---eeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhH-
Confidence 89999999999999999863221110 0111111222 2223 33345443334 7888888999999999986532
Q ss_pred CCCCCCCccceEEEecccCceecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCccccCCCCCCCCcc
Q 004477 185 PAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCV 264 (751)
Q Consensus 185 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~~~~~~~~~~~~~~ 264 (751)
|.+ ..+...+.|++++++| .+.++++|...|.+-+||+|-..++.+...+
T Consensus 1187 -------------w~l---------k~~~~hG~vTSi~idp-~~~WlviGts~G~l~lWDLRF~~~i~sw~~P------- 1236 (1431)
T KOG1240|consen 1187 -------------WRL---------KNQLRHGLVTSIVIDP-WCNWLVIGTSRGQLVLWDLRFRVPILSWEHP------- 1236 (1431)
T ss_pred -------------Hhh---------hcCccccceeEEEecC-CceEEEEecCCceEEEEEeecCceeecccCc-------
Confidence 111 1122456899999999 4789999999999999999987766554221
Q ss_pred ccccccccccCCccccceEEEEEcCC---CCEEEE-Ee-CCCcEEEEECCCCC
Q 004477 265 NYFCPMHLSEHGRSSLHLTHVTFSPN---GEEVLL-SY-SGEHVYLMDVNHAG 312 (751)
Q Consensus 265 ~~~~~~~~~~~g~~~~~vt~v~fspd---g~~Ll~-~s-~d~~I~lwdl~~~~ 312 (751)
+. .+++.+..+|- ....++ ++ +.+.|.+|++.++.
T Consensus 1237 ------------~~-~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~~~g~ 1276 (1431)
T KOG1240|consen 1237 ------------AR-APIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNMETGL 1276 (1431)
T ss_pred ------------cc-CCcceEEeeccCCCCceEEEecccCCCceeeeecccCc
Confidence 11 24666666653 334444 44 57899999999964
No 173
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.62 E-value=6.1e-15 Score=156.79 Aligned_cols=241 Identities=17% Similarity=0.234 Sum_probs=154.9
Q ss_pred cEEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEecccCCcceEEEEEecCCCCcEEEEEECCCcEEEEECCCCCCCC
Q 004477 52 CVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRG 131 (751)
Q Consensus 52 ~V~~l~~s~dg~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~Dg~V~vwd~~~~~~~~ 131 (751)
+|+.++|-|||..|+.+..| .+.|||+..|..+.++ ++|++.|+||+|+.+ |+.++||+.|..|.||..... |
T Consensus 14 ci~d~afkPDGsqL~lAAg~-rlliyD~ndG~llqtL-KgHKDtVycVAys~d--GkrFASG~aDK~VI~W~~klE-G-- 86 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILAAGS-RLLVYDTSDGTLLQPL-KGHKDTVYCVAYAKD--GKRFASGSADKSVIIWTSKLE-G-- 86 (1081)
T ss_pred chheeEECCCCceEEEecCC-EEEEEeCCCccccccc-ccccceEEEEEEccC--CceeccCCCceeEEEeccccc-c--
Confidence 99999999999988887654 7999999999999999 899999999999999 899999999999999998742 1
Q ss_pred CCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCCCCCC-----------------CCCCccc
Q 004477 132 LDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAG-----------------SSHQECR 194 (751)
Q Consensus 132 ~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~~~-----------------~~~~~~~ 194 (751)
+.. ..|++.|.|+.|+| -.+.++||+-. ..-+|............ .+..+..
T Consensus 87 --------~Lk-YSH~D~IQCMsFNP-~~h~LasCsLs-dFglWS~~qK~V~K~kss~R~~~CsWtnDGqylalG~~nGT 155 (1081)
T KOG1538|consen 87 --------ILK-YSHNDAIQCMSFNP-ITHQLASCSLS-DFGLWSPEQKSVSKHKSSSRIICCSWTNDGQYLALGMFNGT 155 (1081)
T ss_pred --------eee-eccCCeeeEeecCc-hHHHhhhcchh-hccccChhhhhHHhhhhheeEEEeeecCCCcEEEEeccCce
Confidence 111 13555555555555 33444444432 22234332211100000 0000011
Q ss_pred eEEEecccCceecccCCCCCccceEEEEEeCCCC----cEEEEEeCCCeEEEEeCCCCCCccccCCCCCCCCcccccccc
Q 004477 195 NILLDLRCGAKRSLADPPKQTLSLKSCDISSTRP----HLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPM 270 (751)
Q Consensus 195 ~~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~----~~l~sgs~D~~IriwD~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (751)
..+-+........+..+.+...+|.+++|+|..+ ..+++.....++.+|.+.-. .+.+-..-.-.|-|+.+|..+
T Consensus 156 IsiRNk~gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~LsG~-~Igk~r~L~FdP~CisYf~NG 234 (1081)
T KOG1538|consen 156 ISIRNKNGEEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLSGK-QIGKDRALNFDPCCISYFTNG 234 (1081)
T ss_pred EEeecCCCCcceEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEecce-eecccccCCCCchhheeccCC
Confidence 1111111122233445556678999999999643 47888888889988887532 222111112234566666433
Q ss_pred cc--------------------ccCCccccceEEEEEcCCCCEEEEEeCCCcEEEEECCCC
Q 004477 271 HL--------------------SEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHA 311 (751)
Q Consensus 271 ~~--------------------~~~g~~~~~vt~v~fspdg~~Ll~~s~d~~I~lwdl~~~ 311 (751)
.. ...|....+|+.|+..|++++++.|+.||+|-.|++-..
T Consensus 235 Ey~LiGGsdk~L~~fTR~GvrLGTvg~~D~WIWtV~~~PNsQ~v~~GCqDGTiACyNl~fS 295 (1081)
T KOG1538|consen 235 EYILLGGSDKQLSLFTRDGVRLGTVGEQDSWIWTVQAKPNSQYVVVGCQDGTIACYNLIFS 295 (1081)
T ss_pred cEEEEccCCCceEEEeecCeEEeeccccceeEEEEEEccCCceEEEEEccCeeehhhhHHh
Confidence 21 112334457899999999999999999999999987663
No 174
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.62 E-value=9.9e-13 Score=143.78 Aligned_cols=209 Identities=27% Similarity=0.426 Sum_probs=157.1
Q ss_pred EeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCe-EEEEeccc-CCcceEEEEE-ecCCCCc-EEEEEEC-CCcE
Q 004477 45 ELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRK-LLHSIETG-HSANVFCTKF-VPETSDE-LVVSGAG-DAEV 119 (751)
Q Consensus 45 ~L~gH~~~V~~l~~s~dg~~LaSgs~Dg~I~IWd~~~~~-~~~~l~~~-h~~~V~~v~f-sp~s~~~-~l~sgs~-Dg~V 119 (751)
.+.+|...|.++.|.+.+..++.++.|+.+.+|+...+. .+..+ .+ +...+..+.+ .++ +. +++..+. |+.+
T Consensus 60 ~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~--~~~~~~~~~~~d~~~ 136 (466)
T COG2319 60 LLRGHEDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIKSL-EGLHDSSVSKLALSSPD--GNSILLASSSLDGTV 136 (466)
T ss_pred eeeeccceEEEEEECCCCcEEEEecCCCcEEEEEcCCCceeEEEE-eccCCCceeeEEEECCC--cceEEeccCCCCccE
Confidence 567899999999999999999999999999999998876 66666 44 3347888888 666 45 5555444 9999
Q ss_pred EEEECCCCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeC-CCcEEEEecCCCCCCCCCCCCCCccceEEE
Q 004477 120 RLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASE-DGTLRQHDFRQGSSCPPAGSSHQECRNILL 198 (751)
Q Consensus 120 ~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~-Dg~I~iwDlr~~~~~~~~~~~~~~~~~~l~ 198 (751)
++|++... ......+..|...|..++|+| ++..+++++. |+.+++|++......
T Consensus 137 ~~~~~~~~---------~~~~~~~~~~~~~v~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~--------------- 191 (466)
T COG2319 137 KLWDLSTP---------GKLIRTLEGHSESVTSLAFSP-DGKLLASGSSLDGTIKLWDLRTGKPL--------------- 191 (466)
T ss_pred EEEEecCC---------CeEEEEEecCcccEEEEEECC-CCCEEEecCCCCCceEEEEcCCCceE---------------
Confidence 99999851 144778889999999999999 5557778875 999999999874321
Q ss_pred ecccCceecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCccccCCCCCCCCccccccccccccCCcc
Q 004477 199 DLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRS 278 (751)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 278 (751)
.....|...|.+++|+|++..++++++.|+.|++||......... . ..+|.
T Consensus 192 ----------~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~wd~~~~~~~~~------------~-------~~~~~ 242 (466)
T COG2319 192 ----------STLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRS------------T-------LSGHS 242 (466)
T ss_pred ----------EeeccCCCceEEEEEcCCcceEEEEecCCCcEEEEECCCCcEEee------------e-------cCCCC
Confidence 111226778999999985432555569999999998774332210 0 12333
Q ss_pred ccceEEEEEcCCCCEEEEEeCCCcEEEEECCCCC
Q 004477 279 SLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAG 312 (751)
Q Consensus 279 ~~~vt~v~fspdg~~Ll~~s~d~~I~lwdl~~~~ 312 (751)
.. + ...|+|++..+++++.|+.+++|++....
T Consensus 243 ~~-~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~ 274 (466)
T COG2319 243 DS-V-VSSFSPDGSLLASGSSDGTIRLWDLRSSS 274 (466)
T ss_pred cc-e-eEeECCCCCEEEEecCCCcEEEeeecCCC
Confidence 31 2 22899999888999999999999999854
No 175
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.62 E-value=1.8e-12 Score=141.77 Aligned_cols=226 Identities=27% Similarity=0.419 Sum_probs=165.2
Q ss_pred ccccccchhhhccccccEEeccCCC-cEEEEEE-CCCCC-EEEEEeC-CCcEEEEeCCC-CeEEEEecccCCcceEEEEE
Q 004477 27 NHSLQMHSSLVRRLSQERELEGHQG-CVNAISW-NSKGS-LLISGSD-DTHINVWSYSS-RKLLHSIETGHSANVFCTKF 101 (751)
Q Consensus 27 ~~~l~~~~~~i~~~~~~~~L~gH~~-~V~~l~~-s~dg~-~LaSgs~-Dg~I~IWd~~~-~~~~~~l~~~h~~~V~~v~f 101 (751)
+..+.+|...... .....+.++.. .+..+.+ ++++. +++..+. |+.+.+|+... ......+ ..|...|.+++|
T Consensus 86 d~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~ 163 (466)
T COG2319 86 DGTIKLWDLDNGE-KLIKSLEGLHDSSVSKLALSSPDGNSILLASSSLDGTVKLWDLSTPGKLIRTL-EGHSESVTSLAF 163 (466)
T ss_pred CCcEEEEEcCCCc-eeEEEEeccCCCceeeEEEECCCcceEEeccCCCCccEEEEEecCCCeEEEEE-ecCcccEEEEEE
Confidence 4445555443332 35566666444 7888888 88887 5555455 99999999987 6677777 799999999999
Q ss_pred ecCCCCcEEEEEEC-CCcEEEEECCCCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCC
Q 004477 102 VPETSDELVVSGAG-DAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQG 180 (751)
Q Consensus 102 sp~s~~~~l~sgs~-Dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~ 180 (751)
+|+ +..+++++. |+.+++|++... ..+..+.+|...|.+++|+|++..++++++.|++|++||...+
T Consensus 164 ~~~--~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~wd~~~~ 231 (466)
T COG2319 164 SPD--GKLLASGSSLDGTIKLWDLRTG----------KPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTG 231 (466)
T ss_pred CCC--CCEEEecCCCCCceEEEEcCCC----------ceEEeeccCCCceEEEEEcCCcceEEEEecCCCcEEEEECCCC
Confidence 999 678888885 999999999862 4577888899999999999844436666699999999988744
Q ss_pred CCCCCCCCCCCccceEEEecccCceecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCccccCCCCCC
Q 004477 181 SSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSP 260 (751)
Q Consensus 181 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~~~~~~~~~~ 260 (751)
..... ....+...+ -..|+|+ +.++++++.|+.+++||.+....
T Consensus 232 ~~~~~------------------------~~~~~~~~~-~~~~~~~-~~~~~~~~~d~~~~~~~~~~~~~---------- 275 (466)
T COG2319 232 KLLRS------------------------TLSGHSDSV-VSSFSPD-GSLLASGSSDGTIRLWDLRSSSS---------- 275 (466)
T ss_pred cEEee------------------------ecCCCCcce-eEeECCC-CCEEEEecCCCcEEEeeecCCCc----------
Confidence 32100 111123332 2278996 47888999999999999986542
Q ss_pred CCccccccccccccCCccccceEEEEEcCCCCEEEEEeCCCcEEEEECCCCC
Q 004477 261 PPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAG 312 (751)
Q Consensus 261 ~~~~~~~~~~~~~~~g~~~~~vt~v~fspdg~~Ll~~s~d~~I~lwdl~~~~ 312 (751)
....+ .+| ...+.++.|+|++..+++++.|+.+.+||+.+..
T Consensus 276 --~~~~~-------~~~-~~~v~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~ 317 (466)
T COG2319 276 --LLRTL-------SGH-SSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGK 317 (466)
T ss_pred --EEEEE-------ecC-CccEEEEEECCCCCEEEEeeCCCcEEEEEcCCCc
Confidence 01111 123 2369999999999999998889889999888754
No 176
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.62 E-value=7.4e-15 Score=148.90 Aligned_cols=229 Identities=17% Similarity=0.261 Sum_probs=158.4
Q ss_pred CCcEEEEEECCCCC-EEEEEeCCCcEEEEeCCCCe---------EEEEecccCCcceEEEEEecCCCCcEEEEEECCCcE
Q 004477 50 QGCVNAISWNSKGS-LLISGSDDTHINVWSYSSRK---------LLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEV 119 (751)
Q Consensus 50 ~~~V~~l~~s~dg~-~LaSgs~Dg~I~IWd~~~~~---------~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~Dg~V 119 (751)
..+|..+.|.+++. .||||+.|..|+||-+..+. .+..+ ..|...|++|.|+|+ |.+|+||+.+|.|
T Consensus 13 ~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~L-s~H~~aVN~vRf~p~--gelLASg~D~g~v 89 (434)
T KOG1009|consen 13 HEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSL-SRHTRAVNVVRFSPD--GELLASGGDGGEV 89 (434)
T ss_pred CCceEEEEeccCcccceecccCccceeeeeeeecCCCCCceeEEEeecc-cCCcceeEEEEEcCC--cCeeeecCCCceE
Confidence 35899999998766 99999999999999875321 22334 789999999999999 8999999999999
Q ss_pred EEEECCCCCC----CCC--CCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCCCCCCCCCCcc
Q 004477 120 RLFNLSRFSG----RGL--DDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQEC 193 (751)
Q Consensus 120 ~vwd~~~~~~----~~~--~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~~~~~~~~~ 193 (751)
.+|-...-.- .+. ..........+.+|...|..++|+| ++.++++++.|.++++||+..+...
T Consensus 90 ~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~-d~~~l~s~s~dns~~l~Dv~~G~l~---------- 158 (434)
T KOG1009|consen 90 FLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSP-DSNFLVSGSVDNSVRLWDVHAGQLL---------- 158 (434)
T ss_pred EEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccC-CCceeeeeeccceEEEEEeccceeE----------
Confidence 9998762000 000 0111334567788999999999999 6789999999999999999998632
Q ss_pred ceEEEecccCceecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCccccCC--------CCCCCCccc
Q 004477 194 RNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQK--------RMSPPPCVN 265 (751)
Q Consensus 194 ~~~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~~~~~~--------~~~~~~~~~ 265 (751)
.....|...+..++|.|- ..++++-+.|...+.+.+...+.+..... ........+
T Consensus 159 ---------------~~~~dh~~yvqgvawDpl-~qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~r 222 (434)
T KOG1009|consen 159 ---------------AILDDHEHYVQGVAWDPL-NQYVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTR 222 (434)
T ss_pred ---------------eeccccccccceeecchh-hhhhhhhccCcccceeeeeeeeeeeeeeeeEeeecccCCCCcceee
Confidence 223347778889999994 78899999998777777765443222110 001111111
Q ss_pred cccccccccCCccccceEEEEEcCCCCEEEEEeC----CC-----cEEEEECCCCCcc
Q 004477 266 YFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYS----GE-----HVYLMDVNHAGGR 314 (751)
Q Consensus 266 ~~~~~~~~~~g~~~~~vt~v~fspdg~~Ll~~s~----d~-----~I~lwdl~~~~~~ 314 (751)
.|....+. . -...++|+|||..|++... ++ ..|+|+-...+.+
T Consensus 223 LfhDeTlk-----s-FFrRlsfTPdG~llvtPag~~~~g~~~~~n~tYvfsrk~l~rP 274 (434)
T KOG1009|consen 223 LFHDETLK-----S-FFRRLSFTPDGSLLVTPAGLFKVGGGVFRNTSYVFSRKDLKRP 274 (434)
T ss_pred eeecCchh-----h-hhhhcccCCCCcEEEcccceeeeCCceeeceeEeeccccccCc
Confidence 12111111 1 2467899999999998754 23 3466655543333
No 177
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.61 E-value=3.9e-15 Score=155.00 Aligned_cols=192 Identities=17% Similarity=0.332 Sum_probs=145.8
Q ss_pred ccccccEEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEecccCCcceEEEEEecCCCCcEEEEEECCC
Q 004477 38 RRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDA 117 (751)
Q Consensus 38 ~~~~~~~~L~gH~~~V~~l~~s~dg~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~Dg 117 (751)
+..+..+....|.+.|.|-.|+|||.-|+|++.||.|+||.- +|-+..++ .....+|.|++|.|++ .+.+++.+.--
T Consensus 92 k~~rVE~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWSr-sGMLRStl-~Q~~~~v~c~~W~p~S-~~vl~c~g~h~ 168 (737)
T KOG1524|consen 92 KSARVERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWSR-SGMLRSTV-VQNEESIRCARWAPNS-NSIVFCQGGHI 168 (737)
T ss_pred ccchhhhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEec-cchHHHHH-hhcCceeEEEEECCCC-CceEEecCCeE
Confidence 344667788999999999999999999999999999999994 45544444 4567889999999997 56666655443
Q ss_pred cEEEEECCCCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCCCCCCCCCCccceEE
Q 004477 118 EVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNIL 197 (751)
Q Consensus 118 ~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~~~~~~~~~~~~l 197 (751)
.|+ -+... ..+..++.|.+-|.++.|++ -.++++|||+|-..++||-....
T Consensus 169 ~IK--pL~~n----------~k~i~WkAHDGiiL~~~W~~-~s~lI~sgGED~kfKvWD~~G~~---------------- 219 (737)
T KOG1524|consen 169 SIK--PLAAN----------SKIIRWRAHDGLVLSLSWST-QSNIIASGGEDFRFKIWDAQGAN---------------- 219 (737)
T ss_pred EEe--ecccc----------cceeEEeccCcEEEEeecCc-cccceeecCCceeEEeecccCcc----------------
Confidence 444 33321 23567889999999999999 55899999999999999965432
Q ss_pred EecccCceecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCccccCCCCCCCCccccccccccccCCc
Q 004477 198 LDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGR 277 (751)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 277 (751)
+.....|..+|++++|+|+ ..+++++. +++|+=..+
T Consensus 220 ----------Lf~S~~~ey~ITSva~npd--~~~~v~S~-nt~R~~~p~------------------------------- 255 (737)
T KOG1524|consen 220 ----------LFTSAAEEYAITSVAFNPE--KDYLLWSY-NTARFSSPR------------------------------- 255 (737)
T ss_pred ----------cccCChhccceeeeeeccc--cceeeeee-eeeeecCCC-------------------------------
Confidence 2233347889999999995 66776664 345532221
Q ss_pred cccceEEEEEcCCCCEEEEEeCCCcEEEE
Q 004477 278 SSLHLTHVTFSPNGEEVLLSYSGEHVYLM 306 (751)
Q Consensus 278 ~~~~vt~v~fspdg~~Ll~~s~d~~I~lw 306 (751)
.+.|..++||+||..+++|+..|.+.+=
T Consensus 256 -~GSifnlsWS~DGTQ~a~gt~~G~v~~A 283 (737)
T KOG1524|consen 256 -VGSIFNLSWSADGTQATCGTSTGQLIVA 283 (737)
T ss_pred -ccceEEEEEcCCCceeeccccCceEEEe
Confidence 1248999999999999999998877653
No 178
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.61 E-value=1.9e-14 Score=148.01 Aligned_cols=229 Identities=14% Similarity=0.204 Sum_probs=171.5
Q ss_pred cccccchhhhccccccEEeccCC-CcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEecccCCcceEEEEEecCCC
Q 004477 28 HSLQMHSSLVRRLSQERELEGHQ-GCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETS 106 (751)
Q Consensus 28 ~~l~~~~~~i~~~~~~~~L~gH~-~~V~~l~~s~dg~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~s~ 106 (751)
+-++.|+....++..++.+.|+. ..+.....+|++++||..+..|.|.|....++..+.+++ -.+.|..++|+.+
T Consensus 280 ky~ysyDle~ak~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~K--ieG~v~~~~fsSd-- 355 (514)
T KOG2055|consen 280 KYLYSYDLETAKVTKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSFK--IEGVVSDFTFSSD-- 355 (514)
T ss_pred eEEEEeeccccccccccCCCCcccchhheeEecCCCCeEEEcccCceEEeehhhhhhhhheee--eccEEeeEEEecC--
Confidence 44566777777777777777776 457788999999999999999999999999999998883 5688999999987
Q ss_pred CcEEEEEECCCcEEEEECCCCCCCCCCCCCCCCceeecccCCce--eEEEEecCCCCEEEEEeCCCcEEEEecCCCCCCC
Q 004477 107 DELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRV--KKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCP 184 (751)
Q Consensus 107 ~~~l~sgs~Dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V--~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~ 184 (751)
++.|+.++.+|.|.+||+... .+++.+.. .+.| ++++.++ ++.+||+||..|.|-|||..+....
T Consensus 356 sk~l~~~~~~GeV~v~nl~~~----------~~~~rf~D-~G~v~gts~~~S~-ng~ylA~GS~~GiVNIYd~~s~~~s- 422 (514)
T KOG2055|consen 356 SKELLASGGTGEVYVWNLRQN----------SCLHRFVD-DGSVHGTSLCISL-NGSYLATGSDSGIVNIYDGNSCFAS- 422 (514)
T ss_pred CcEEEEEcCCceEEEEecCCc----------ceEEEEee-cCccceeeeeecC-CCceEEeccCcceEEEeccchhhcc-
Confidence 788888899999999999975 33555542 3333 5667778 7789999999999999997653211
Q ss_pred CCCCCCCccceEEEecccCceecccCCCCCccceEEEEEeCCCCcEEEEEe--CCCeEEEEeCCCCCCccccCCCCCCCC
Q 004477 185 PAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGG--SDAFARLYDRRMLPPLTSCQKRMSPPP 262 (751)
Q Consensus 185 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs--~D~~IriwD~~~~~~~~~~~~~~~~~~ 262 (751)
.....+.....-...|+++.|+|+ ..+|+.++ .+..+|+-.+.+......++..
T Consensus 423 ------------------~~PkPik~~dNLtt~Itsl~Fn~d-~qiLAiaS~~~knalrLVHvPS~TVFsNfP~~----- 478 (514)
T KOG2055|consen 423 ------------------TNPKPIKTVDNLTTAITSLQFNHD-AQILAIASRVKKNALRLVHVPSCTVFSNFPTS----- 478 (514)
T ss_pred ------------------CCCCchhhhhhhheeeeeeeeCcc-hhhhhhhhhccccceEEEeccceeeeccCCCC-----
Confidence 011112222334568999999994 78877766 4678888887665433222111
Q ss_pred ccccccccccccCCccccceEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 004477 263 CVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNH 310 (751)
Q Consensus 263 ~~~~~~~~~~~~~g~~~~~vt~v~fspdg~~Ll~~s~d~~I~lwdl~~ 310 (751)
+..-..|+|++|||.|.+|++|..+|.|.||.+..
T Consensus 479 -------------n~~vg~vtc~aFSP~sG~lAvGNe~grv~l~kL~h 513 (514)
T KOG2055|consen 479 -------------NTKVGHVTCMAFSPNSGYLAVGNEAGRVHLFKLHH 513 (514)
T ss_pred -------------CCcccceEEEEecCCCceEEeecCCCceeeEeecc
Confidence 11122599999999999999999999999998763
No 179
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.60 E-value=1.3e-14 Score=148.35 Aligned_cols=202 Identities=23% Similarity=0.311 Sum_probs=149.1
Q ss_pred EEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEecccCCcceEEEEEecCCCCcEEEEEECCCcEEEEECCCCCCCCCC
Q 004477 54 NAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLD 133 (751)
Q Consensus 54 ~~l~~s~dg~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~Dg~V~vwd~~~~~~~~~~ 133 (751)
.+++|+.+|..|++|+.||++|||+..+...+... ..|.+.|.++.|+|+ +++|++-+.| ..+||++.++..
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e-~~~~~eV~DL~FS~d--gk~lasig~d-~~~VW~~~~g~~---- 219 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEE-IAHHAEVKDLDFSPD--GKFLASIGAD-SARVWSVNTGAA---- 219 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCcchhhhhh-HhhcCccccceeCCC--CcEEEEecCC-ceEEEEeccCch----
Confidence 68999999999999999999999998877777777 789999999999999 8999999999 999999997521
Q ss_pred CCCCCCceee--cccCCceeEEEEecCC---C-CEEEEEeCCCcEEEEecCCCCCCCCCCCCCCccceEEEecccCceec
Q 004477 134 DNAITPSALY--QCHTRRVKKLAVEVGN---P-HVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRS 207 (751)
Q Consensus 134 ~~~~~~~~~~--~~h~~~V~~l~~sp~~---~-~~l~s~s~Dg~I~iwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 207 (751)
+... ..-......+.|+.++ . .+++....-+.|+.||+...+.- +++ .
T Consensus 220 ------~a~~t~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~-----------~~l---------~ 273 (398)
T KOG0771|consen 220 ------LARKTPFSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGS-----------NFL---------R 273 (398)
T ss_pred ------hhhcCCcccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccc-----------ccc---------c
Confidence 2222 1223345667777632 1 23334445567888777654310 000 0
Q ss_pred ccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCccccCCCCCCCCccccccccccccCCccccceEEEEE
Q 004477 208 LADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTF 287 (751)
Q Consensus 208 ~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~vt~v~f 287 (751)
....-.....|.++++++ ++++++.|+.||.|-||+..+++.+ ++.. +.|.. .||.+.|
T Consensus 274 ~~~~~~~~~siSsl~VS~-dGkf~AlGT~dGsVai~~~~~lq~~-------------~~vk------~aH~~-~VT~ltF 332 (398)
T KOG0771|consen 274 LRKKIKRFKSISSLAVSD-DGKFLALGTMDGSVAIYDAKSLQRL-------------QYVK------EAHLG-FVTGLTF 332 (398)
T ss_pred hhhhhhccCcceeEEEcC-CCcEEEEeccCCcEEEEEeceeeee-------------Eeeh------hhhee-eeeeEEE
Confidence 111111234799999999 5899999999999999999876533 2222 23434 5999999
Q ss_pred cCCCCEEEEEeCCCcEEEEECCC
Q 004477 288 SPNGEEVLLSYSGEHVYLMDVNH 310 (751)
Q Consensus 288 spdg~~Ll~~s~d~~I~lwdl~~ 310 (751)
+||.+++++-+.+..+.|..+.-
T Consensus 333 ~Pdsr~~~svSs~~~~~v~~l~v 355 (398)
T KOG0771|consen 333 SPDSRYLASVSSDNEAAVTKLAV 355 (398)
T ss_pred cCCcCcccccccCCceeEEEEee
Confidence 99999999999999999988766
No 180
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.60 E-value=2.1e-13 Score=146.56 Aligned_cols=239 Identities=15% Similarity=0.218 Sum_probs=179.8
Q ss_pred cccEEeccCC-CcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEecccCCcceEEEEEecCCCCcEEEEEECCCcE
Q 004477 41 SQERELEGHQ-GCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEV 119 (751)
Q Consensus 41 ~~~~~L~gH~-~~V~~l~~s~dg~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~Dg~V 119 (751)
-+..++.||. +.|..|+|++ |..|.|.+.+|.|.-||+.+++.+..+ ....+.|++++.+|. +..++.|+.||.+
T Consensus 59 ~~~~vi~g~~drsIE~L~W~e-~~RLFS~g~sg~i~EwDl~~lk~~~~~-d~~gg~IWsiai~p~--~~~l~IgcddGvl 134 (691)
T KOG2048|consen 59 FLEPVIHGPEDRSIESLAWAE-GGRLFSSGLSGSITEWDLHTLKQKYNI-DSNGGAIWSIAINPE--NTILAIGCDDGVL 134 (691)
T ss_pred eeeEEEecCCCCceeeEEEcc-CCeEEeecCCceEEEEecccCceeEEe-cCCCcceeEEEeCCc--cceEEeecCCceE
Confidence 4566777775 5799999994 556888889999999999999999988 778899999999999 6899999999977
Q ss_pred EEEECCCCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCCCCCCCCCCccceEEEe
Q 004477 120 RLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLD 199 (751)
Q Consensus 120 ~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~~~~~~~~~~~~l~~ 199 (751)
..+++... + ......+...+++|.+++|+| ++..+++|+.||.|++||...++... +.+
T Consensus 135 ~~~s~~p~--~------I~~~r~l~rq~sRvLslsw~~-~~~~i~~Gs~Dg~Iriwd~~~~~t~~------------~~~ 193 (691)
T KOG2048|consen 135 YDFSIGPD--K------ITYKRSLMRQKSRVLSLSWNP-TGTKIAGGSIDGVIRIWDVKSGQTLH------------IIT 193 (691)
T ss_pred EEEecCCc--e------EEEEeecccccceEEEEEecC-CccEEEecccCceEEEEEcCCCceEE------------Eee
Confidence 77776642 1 122344556689999999999 56778999999999999999886431 111
Q ss_pred cccCceecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCccccCCCCCCCCccccccccccccCCccc
Q 004477 200 LRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSS 279 (751)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 279 (751)
+..... ......-|.++.|-. ...|++|..-|+|.+||...+..+.+. .-|..
T Consensus 194 ~~~d~l-----~k~~~~iVWSv~~Lr--d~tI~sgDS~G~V~FWd~~~gTLiqS~--------------------~~h~a 246 (691)
T KOG2048|consen 194 MQLDRL-----SKREPTIVWSVLFLR--DSTIASGDSAGTVTFWDSIFGTLIQSH--------------------SCHDA 246 (691)
T ss_pred eccccc-----ccCCceEEEEEEEee--cCcEEEecCCceEEEEcccCcchhhhh--------------------hhhhc
Confidence 111110 011345577887775 369999999999999999887655432 11222
Q ss_pred cceEEEEEcCCCCEEEEEeCCCcEEEEECCCCCcc----eeeeecCCCceeEEeCCC
Q 004477 280 LHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGR----AMRYTVGDASKIMSFTPT 332 (751)
Q Consensus 280 ~~vt~v~fspdg~~Ll~~s~d~~I~lwdl~~~~~~----~~~~~~~~~~~~~~~sp~ 332 (751)
.|.+++.++++++|++++.|+.|..|...+.+.. .....+++.++.+++.+.
T Consensus 247 -dVl~Lav~~~~d~vfsaGvd~~ii~~~~~~~~~~wv~~~~r~~h~hdvrs~av~~~ 302 (691)
T KOG2048|consen 247 -DVLALAVADNEDRVFSAGVDPKIIQYSLTTNKSEWVINSRRDLHAHDVRSMAVIEN 302 (691)
T ss_pred -ceeEEEEcCCCCeEEEccCCCceEEEEecCCccceeeeccccCCcccceeeeeecc
Confidence 4999999999999999999999999998886442 223345667777776664
No 181
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.60 E-value=5.8e-14 Score=138.36 Aligned_cols=236 Identities=17% Similarity=0.208 Sum_probs=171.4
Q ss_pred CcEEEEEEC-------CCCCEEEEEeCCCcEEEEeCCCCeEEEEecc-cCC---cceEEEEEecCCCCcEEEEEECCCcE
Q 004477 51 GCVNAISWN-------SKGSLLISGSDDTHINVWSYSSRKLLHSIET-GHS---ANVFCTKFVPETSDELVVSGAGDAEV 119 (751)
Q Consensus 51 ~~V~~l~~s-------~dg~~LaSgs~Dg~I~IWd~~~~~~~~~l~~-~h~---~~V~~v~fsp~s~~~~l~sgs~Dg~V 119 (751)
+.|...+|- |+..++|+.+.|.-|.+||..+|+....+.. .|. .+..|++|+|+ |..|+.| ....|
T Consensus 105 ~tvydy~wYs~M~s~qP~t~l~a~ssr~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~D--GeqlfaG-ykrci 181 (406)
T KOG2919|consen 105 ETVYDYCWYSRMKSDQPSTNLFAVSSRDQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPD--GEQLFAG-YKRCI 181 (406)
T ss_pred CEEEEEEeeeccccCCCccceeeeccccCceeeeeccccccccchhhhhhHHhhhhheeEEecCC--CCeEeec-ccceE
Confidence 467777885 5778999999999999999999988776621 232 35679999999 7888875 56899
Q ss_pred EEEECCCCCCCCCCCCCCCCcee-----ecccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCCCCCCCCCCccc
Q 004477 120 RLFNLSRFSGRGLDDNAITPSAL-----YQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECR 194 (751)
Q Consensus 120 ~vwd~~~~~~~~~~~~~~~~~~~-----~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~~~~~~~~~~ 194 (751)
+|+|+..+-..+ ++.. -.+..+-+.+++|+|.+...++.|+.-.++-||.-....++
T Consensus 182 rvFdt~RpGr~c-------~vy~t~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl----------- 243 (406)
T KOG2919|consen 182 RVFDTSRPGRDC-------PVYTTVTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPL----------- 243 (406)
T ss_pred EEeeccCCCCCC-------cchhhhhcccccccceeeeeeccCCCCcceeeecccceeeeEecCCCCce-----------
Confidence 999996532222 1222 22347788999999999889999999888888776555433
Q ss_pred eEEEecccCceecccCCCCCccceEEEEEeCCCCcEEEEEe-CCCeEEEEeCCCCC-CccccCCCCCCCCcccccccccc
Q 004477 195 NILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGG-SDAFARLYDRRMLP-PLTSCQKRMSPPPCVNYFCPMHL 272 (751)
Q Consensus 195 ~~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs-~D~~IriwD~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 272 (751)
....+|...|+.+.|.++ ++.|.+|+ .|..|-.||+|... ++..+.. |.
T Consensus 244 --------------~llggh~gGvThL~~~ed-Gn~lfsGaRk~dkIl~WDiR~~~~pv~~L~r--------------hv 294 (406)
T KOG2919|consen 244 --------------QLLGGHGGGVTHLQWCED-GNKLFSGARKDDKILCWDIRYSRDPVYALER--------------HV 294 (406)
T ss_pred --------------eeecccCCCeeeEEeccC-cCeecccccCCCeEEEEeehhccchhhhhhh--------------hc
Confidence 222357889999999996 56666665 58899999999653 2222211 11
Q ss_pred ccCCccccceEEEEEcCCCCEEEEEeCCCcEEEEECCCCC-cceeeeecCCCceeEEeCCCCCCcccCC
Q 004477 273 SEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAG-GRAMRYTVGDASKIMSFTPTLNGLELQP 340 (751)
Q Consensus 273 ~~~g~~~~~vt~v~fspdg~~Ll~~s~d~~I~lwdl~~~~-~~~~~~~~~~~~~~~~~sp~~~~~~~~~ 340 (751)
+.++..| -....|+|++|++|+.||.|++||+++.. ...+........+.++++|.+..++...
T Consensus 295 ---~~TNQRI-~FDld~~~~~LasG~tdG~V~vwdlk~~gn~~sv~~~~sd~vNgvslnP~mpilatss 359 (406)
T KOG2919|consen 295 ---GDTNQRI-LFDLDPKGEILASGDTDGSVRVWDLKDLGNEVSVTGNYSDTVNGVSLNPIMPILATSS 359 (406)
T ss_pred ---cCccceE-EEecCCCCceeeccCCCccEEEEecCCCCCcccccccccccccceecCcccceeeecc
Confidence 1122222 35667999999999999999999999954 4566666788888999999876665443
No 182
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.60 E-value=9e-15 Score=154.73 Aligned_cols=204 Identities=18% Similarity=0.237 Sum_probs=147.0
Q ss_pred CcEEEEEECC-CCCEEEEEeCCCcEEEEeCCCCe-------EEEEecccCCcceEEEEEecCCCCcEEEEEECCCcEEEE
Q 004477 51 GCVNAISWNS-KGSLLISGSDDTHINVWSYSSRK-------LLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLF 122 (751)
Q Consensus 51 ~~V~~l~~s~-dg~~LaSgs~Dg~I~IWd~~~~~-------~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~Dg~V~vw 122 (751)
..|+.+.|+| |...||.|++||.|+||.+..+. ....+ ++|...|+++.|+|-. .+.|++++.|.+|++|
T Consensus 628 t~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~l-t~h~eKI~slRfHPLA-advLa~asyd~Ti~lW 705 (1012)
T KOG1445|consen 628 TLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENEMTPEKIL-TIHGEKITSLRFHPLA-ADVLAVASYDSTIELW 705 (1012)
T ss_pred ceeeecccCCCChHHeeecccCceEEEEEeccCCCCcccCCcceee-ecccceEEEEEecchh-hhHhhhhhccceeeee
Confidence 4689999999 78899999999999999986432 23334 7899999999999986 6899999999999999
Q ss_pred ECCCCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCCCCCCCCCCccceEEEeccc
Q 004477 123 NLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRC 202 (751)
Q Consensus 123 d~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~~~~~~~~~~~~l~~~~~ 202 (751)
|+... .....+.+|++.|.+++|+| +++.+++.+.||+|++|..|.+......+.+..
T Consensus 706 Dl~~~----------~~~~~l~gHtdqIf~~AWSp-dGr~~AtVcKDg~~rVy~Prs~e~pv~Eg~gpv----------- 763 (1012)
T KOG1445|consen 706 DLANA----------KLYSRLVGHTDQIFGIAWSP-DGRRIATVCKDGTLRVYEPRSREQPVYEGKGPV----------- 763 (1012)
T ss_pred ehhhh----------hhhheeccCcCceeEEEECC-CCcceeeeecCceEEEeCCCCCCCccccCCCCc-----------
Confidence 99975 34567899999999999999 779999999999999999998764422211110
Q ss_pred CceecccCCCCCccceEEEEEeCCCCcEEEEEeCC----CeEEEEeCCCCCC--ccccCCCCCCCCccccccccccccCC
Q 004477 203 GAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSD----AFARLYDRRMLPP--LTSCQKRMSPPPCVNYFCPMHLSEHG 276 (751)
Q Consensus 203 ~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D----~~IriwD~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~g 276 (751)
...--.|.|.- +++++++.+.| ..|.+||..+... +...... ..|
T Consensus 764 ------------gtRgARi~wac-dgr~viv~Gfdk~SeRQv~~Y~Aq~l~~~pl~t~~lD---------vap------- 814 (1012)
T KOG1445|consen 764 ------------GTRGARILWAC-DGRIVIVVGFDKSSERQVQMYDAQTLDLRPLYTQVLD---------VAP------- 814 (1012)
T ss_pred ------------cCcceeEEEEe-cCcEEEEecccccchhhhhhhhhhhccCCcceeeeec---------ccC-------
Confidence 11223445555 46777777665 5688888876541 1110000 000
Q ss_pred ccccceEEEEEcCCCCE-EEEEeCCCcEEEEECCCC
Q 004477 277 RSSLHLTHVTFSPNGEE-VLLSYSGEHVYLMDVNHA 311 (751)
Q Consensus 277 ~~~~~vt~v~fspdg~~-Ll~~s~d~~I~lwdl~~~ 311 (751)
.+.--.+.+|.+. +++|-+|..|++|.+-..
T Consensus 815 ----s~LvP~YD~Ds~~lfltGKGD~~v~~yEv~~e 846 (1012)
T KOG1445|consen 815 ----SPLVPHYDYDSNVLFLTGKGDRFVNMYEVIYE 846 (1012)
T ss_pred ----ccccccccCCCceEEEecCCCceEEEEEecCC
Confidence 0111234556554 556667999999998774
No 183
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.59 E-value=4.2e-14 Score=137.52 Aligned_cols=204 Identities=15% Similarity=0.250 Sum_probs=152.4
Q ss_pred cCCCcEEEEEECC-CCCEEEEEeCCCcEEEEeCCCCeE---EEEecccCCcceEEEEEecCCCCcEEEEEECCCcEEEEE
Q 004477 48 GHQGCVNAISWNS-KGSLLISGSDDTHINVWSYSSRKL---LHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFN 123 (751)
Q Consensus 48 gH~~~V~~l~~s~-dg~~LaSgs~Dg~I~IWd~~~~~~---~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~Dg~V~vwd 123 (751)
.|..++++..|+. +-++|.+.|-|.+..|||++++.. ..++ ..|...|+.|+|...+ -+.|||++.||+||+||
T Consensus 148 ~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~~~vkTQL-IAHDKEV~DIaf~~~s-~~~FASvgaDGSvRmFD 225 (364)
T KOG0290|consen 148 EFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVSGTVKTQL-IAHDKEVYDIAFLKGS-RDVFASVGADGSVRMFD 225 (364)
T ss_pred ccCCcccccccccCCcceeEeecccCeEEEEEEeeccccceeeEE-EecCcceeEEEeccCc-cceEEEecCCCcEEEEE
Confidence 3567899999997 778999999999999999998633 3344 7999999999999975 58999999999999999
Q ss_pred CCCCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCC-CcEEEEecCCCCCCCCCCCCCCccceEEEeccc
Q 004477 124 LSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASED-GTLRQHDFRQGSSCPPAGSSHQECRNILLDLRC 202 (751)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~D-g~I~iwDlr~~~~~~~~~~~~~~~~~~l~~~~~ 202 (751)
++...... .+..-.....+...++|++.+++++++-..| ..|.|.|+|.+...
T Consensus 226 LR~leHST-------IIYE~p~~~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P~tp------------------- 279 (364)
T KOG0290|consen 226 LRSLEHST-------IIYEDPSPSTPLLRLSWNKQDPNYMATFAMDSNKVVILDIRVPCTP------------------- 279 (364)
T ss_pred ecccccce-------EEecCCCCCCcceeeccCcCCchHHhhhhcCCceEEEEEecCCCcc-------------------
Confidence 99643211 0111112256778899999999999887765 46889999987532
Q ss_pred CceecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCccccCCCCCCCCccccccccccccCCccccce
Q 004477 203 GAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHL 282 (751)
Q Consensus 203 ~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v 282 (751)
+....+|...|+.++|.|..+..|.+++.|..+-|||+.....-. ...| ...+ .....|
T Consensus 280 -----va~L~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~~~~-----~~dP--ilay---------~a~~EV 338 (364)
T KOG0290|consen 280 -----VARLRNHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQMPREN-----GEDP--ILAY---------TAGGEV 338 (364)
T ss_pred -----eehhhcCcccccceEecCCCCceeeecCCcceEEEEecccccccC-----CCCc--hhhh---------hcccee
Confidence 445566899999999999888999999999999999997543100 0000 0011 012259
Q ss_pred EEEEEcC-CCCEEEEEeCC
Q 004477 283 THVTFSP-NGEEVLLSYSG 300 (751)
Q Consensus 283 t~v~fsp-dg~~Ll~~s~d 300 (751)
+.+.|++ .+.+|+++...
T Consensus 339 Nqi~Ws~~~~Dwiai~~~k 357 (364)
T KOG0290|consen 339 NQIQWSSSQPDWIAICFGK 357 (364)
T ss_pred eeeeecccCCCEEEEEecC
Confidence 9999996 56677776653
No 184
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.59 E-value=1.3e-13 Score=136.13 Aligned_cols=231 Identities=15% Similarity=0.189 Sum_probs=171.4
Q ss_pred EeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCC---eEEEEecccCCcceEEEEEecCCCCcEEEEEECCCcEEE
Q 004477 45 ELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSR---KLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRL 121 (751)
Q Consensus 45 ~L~gH~~~V~~l~~s~dg~~LaSgs~Dg~I~IWd~~~~---~~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~Dg~V~v 121 (751)
.+.--..+|+|.+|++|++.+|.+-....|.||..... +..+++ ..|...|++|.|.|. .+.|++|+.|..-+|
T Consensus 5 ~~~~~~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htl-s~Hd~~vtgvdWap~--snrIvtcs~drnayV 81 (361)
T KOG1523|consen 5 VFHRLLEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTL-SEHDKIVTGVDWAPK--SNRIVTCSHDRNAYV 81 (361)
T ss_pred EeeeccCceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceeh-hhhCcceeEEeecCC--CCceeEccCCCCccc
Confidence 34444679999999999999999999999999987644 466777 889999999999999 589999999999999
Q ss_pred EECCCCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCCCCCCCCCCccceEEEecc
Q 004477 122 FNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLR 201 (751)
Q Consensus 122 wd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~~~~~~~~~~~~l~~~~ 201 (751)
|....+ ...++...+..|+..++++.|+| ..+.|++||.-..|-+|-++.... -|-
T Consensus 82 w~~~~~-------~~WkptlvLlRiNrAAt~V~WsP-~enkFAVgSgar~isVcy~E~ENd--------------WWV-- 137 (361)
T KOG1523|consen 82 WTQPSG-------GTWKPTLVLLRINRAATCVKWSP-KENKFAVGSGARLISVCYYEQEND--------------WWV-- 137 (361)
T ss_pred cccCCC-------CeeccceeEEEeccceeeEeecC-cCceEEeccCccEEEEEEEecccc--------------eeh--
Confidence 998532 22467778888999999999999 779999999999999998876431 000
Q ss_pred cCceecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCccccCCCCCCCCcccccccccc-ccCCcccc
Q 004477 202 CGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHL-SEHGRSSL 280 (751)
Q Consensus 202 ~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~ 280 (751)
...........|++++|+|+ +-++++|+.|+.+|++..-- +.+ ..+..+..--..+.-+.+ .+.....+
T Consensus 138 -----sKhikkPirStv~sldWhpn-nVLlaaGs~D~k~rVfSayI-K~V---dekpap~pWgsk~PFG~lm~E~~~~gg 207 (361)
T KOG1523|consen 138 -----SKHIKKPIRSTVTSLDWHPN-NVLLAAGSTDGKCRVFSAYI-KGV---DEKPAPTPWGSKMPFGQLMSEASSSGG 207 (361)
T ss_pred -----hhhhCCccccceeeeeccCC-cceecccccCcceeEEEEee-ecc---ccCCCCCCCccCCcHHHHHHhhccCCC
Confidence 00011113567999999994 78999999999999997531 111 111111111111111111 11223455
Q ss_pred ceEEEEEcCCCCEEEEEeCCCcEEEEECCCCC
Q 004477 281 HLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAG 312 (751)
Q Consensus 281 ~vt~v~fspdg~~Ll~~s~d~~I~lwdl~~~~ 312 (751)
+|..+.|+|+|..|+-.+.|..|.+-|...+.
T Consensus 208 wvh~v~fs~sG~~lawv~Hds~v~~~da~~p~ 239 (361)
T KOG1523|consen 208 WVHGVLFSPSGNRLAWVGHDSTVSFVDAAGPS 239 (361)
T ss_pred ceeeeEeCCCCCEeeEecCCCceEEeecCCCc
Confidence 79999999999999999999999999988754
No 185
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.58 E-value=3.1e-14 Score=136.68 Aligned_cols=241 Identities=15% Similarity=0.185 Sum_probs=162.8
Q ss_pred ccEEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEecccCCcceEEEEEecCCCCcEEEEEECCCcEEE
Q 004477 42 QERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRL 121 (751)
Q Consensus 42 ~~~~L~gH~~~V~~l~~s~dg~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~Dg~V~v 121 (751)
+...|++|.+.|+++.|-.+++ |.+|..-|.|++|++.+.+.+..+...|...|+.+.-.|+ ..+.+-+.|+.+.+
T Consensus 6 P~fvLRp~~~~v~s~~fqa~~r-L~sg~~~G~V~~w~lqt~r~~~~~r~~g~~~it~lq~~p~---d~l~tqgRd~~L~l 81 (323)
T KOG0322|consen 6 PFFVLRPHSSSVTSVLFQANER-LMSGLSVGIVKMWVLQTERDLPLIRLFGRLFITNLQSIPN---DSLDTQGRDPLLIL 81 (323)
T ss_pred CeeEeccccchheehhhccchh-hhcccccceEEEEEeecCccchhhhhhccceeeceeecCC---cchhhcCCCceEEE
Confidence 5677889999999999998876 8899999999999999988888874467889999998886 57888899999999
Q ss_pred EECCCCCCCCC----------------C-C------------CCC--------CCceee------cccCCceeEEEEecC
Q 004477 122 FNLSRFSGRGL----------------D-D------------NAI--------TPSALY------QCHTRRVKKLAVEVG 158 (751)
Q Consensus 122 wd~~~~~~~~~----------------~-~------------~~~--------~~~~~~------~~h~~~V~~l~~sp~ 158 (751)
|++..+.-... . . ... .+.++. ....+.|.+..+..+
T Consensus 82 w~ia~s~~i~i~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd~~~~Klgsvmc~~~~~~ 161 (323)
T KOG0322|consen 82 WTIAYSAFISIHSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIADDSERSKLGSVMCQDKDHA 161 (323)
T ss_pred EEccCcceEEEeeeeccccccccceeccCCCcchhheecCCcccchhhhhccCccceeEccCchhccccCceeeeecccc
Confidence 99985211000 0 0 000 000000 112355666665443
Q ss_pred CCC--EEEEEeCCCcEEEEecCCCCCCCC----------CCCCCCccc-------------------eEEEecccC--ce
Q 004477 159 NPH--VVWSASEDGTLRQHDFRQGSSCPP----------AGSSHQECR-------------------NILLDLRCG--AK 205 (751)
Q Consensus 159 ~~~--~l~s~s~Dg~I~iwDlr~~~~~~~----------~~~~~~~~~-------------------~~l~~~~~~--~~ 205 (751)
++. +++.|-++|.|.+||+.++..+.. .....+... .+.+.+... ..
T Consensus 162 c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~dkl~~~Sl~~s~gsl 241 (323)
T KOG0322|consen 162 CGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGADDKLVMYSLNHSTGSL 241 (323)
T ss_pred ccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCCCccccceeeeeccccCcc
Confidence 333 456677899999999999733211 001111111 111221111 00
Q ss_pred ecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCccccCCCCCCCCccccccccccccCCccccceEEE
Q 004477 206 RSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHV 285 (751)
Q Consensus 206 ~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~vt~v 285 (751)
..-.+..-....|..+.+-| |++.+++++.|+.||||..+++.++..+ ..|.. .|+++
T Consensus 242 q~~~e~~lknpGv~gvrIRp-D~KIlATAGWD~RiRVyswrtl~pLAVL--------------------kyHsa-gvn~v 299 (323)
T KOG0322|consen 242 QIRKEITLKNPGVSGVRIRP-DGKILATAGWDHRIRVYSWRTLNPLAVL--------------------KYHSA-GVNAV 299 (323)
T ss_pred cccceEEecCCCccceEEcc-CCcEEeecccCCcEEEEEeccCCchhhh--------------------hhhhc-ceeEE
Confidence 00000011223567788888 5899999999999999999999877543 22443 59999
Q ss_pred EEcCCCCEEEEEeCCCcEEEEEC
Q 004477 286 TFSPNGEEVLLSYSGEHVYLMDV 308 (751)
Q Consensus 286 ~fspdg~~Ll~~s~d~~I~lwdl 308 (751)
+|+|+...+++++.|+.|.||++
T Consensus 300 Afspd~~lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 300 AFSPDCELMAAASKDARISLWKL 322 (323)
T ss_pred EeCCCCchhhhccCCceEEeeec
Confidence 99999999999999999999986
No 186
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.56 E-value=1.8e-13 Score=151.52 Aligned_cols=235 Identities=18% Similarity=0.160 Sum_probs=170.1
Q ss_pred cccchhhhccccccEEeccCCCcEEEEEECC-CCCEEEEEeCCCcEEEEeCCCCeE-----EEEecccCCcceEEEEEec
Q 004477 30 LQMHSSLVRRLSQERELEGHQGCVNAISWNS-KGSLLISGSDDTHINVWSYSSRKL-----LHSIETGHSANVFCTKFVP 103 (751)
Q Consensus 30 l~~~~~~i~~~~~~~~L~gH~~~V~~l~~s~-dg~~LaSgs~Dg~I~IWd~~~~~~-----~~~l~~~h~~~V~~v~fsp 103 (751)
+.+|+..-. ..+...|. -...|.|++|+| +..+||.|..+|.|.+||+..+.. +......|..+|+.+.|..
T Consensus 224 ~~vW~~~~p-~~Pe~~~~-~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~ 301 (555)
T KOG1587|consen 224 LLVWSLKNP-NTPELVLE-SPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQ 301 (555)
T ss_pred EEEEecCCC-CCceEEEe-cCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEec
Confidence 444443333 55666665 356899999999 677999999999999999986654 2223357999999999998
Q ss_pred CCCCcEEEEEECCCcEEEEECCCCCCCC----C-------------------------------------------CC--
Q 004477 104 ETSDELVVSGAGDAEVRLFNLSRFSGRG----L-------------------------------------------DD-- 134 (751)
Q Consensus 104 ~s~~~~l~sgs~Dg~V~vwd~~~~~~~~----~-------------------------------------------~~-- 134 (751)
+..+.-|++++.||.|+.|+++...... . ..
T Consensus 302 ~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~ 381 (555)
T KOG1587|consen 302 NEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYT 381 (555)
T ss_pred cCCCCceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCc
Confidence 7544569999999999999987422100 0 00
Q ss_pred ----CCCCCceeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCCCCCCCCCCccceEEEecccCceecccC
Q 004477 135 ----NAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLAD 210 (751)
Q Consensus 135 ----~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 210 (751)
...+....+..|.++|+.+.++|....+|++++ |-+++||........ +..
T Consensus 382 ~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~g-DW~vriWs~~~~~~P------------------------l~~ 436 (555)
T KOG1587|consen 382 PAPEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVG-DWTVRIWSEDVIASP------------------------LLS 436 (555)
T ss_pred ccccccccccccccccCcceEeeecCCCccceeeeec-cceeEeccccCCCCc------------------------chh
Confidence 001334466778999999999998888888877 899999987632211 111
Q ss_pred CCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCccccCCCCCCCCccccccccccccCCccccceEEEEEcCC
Q 004477 211 PPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPN 290 (751)
Q Consensus 211 ~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~vt~v~fspd 290 (751)
...+...|++++|||..+..|+++..||.|.|||+....... .+.+.. + ....+.+.|+++
T Consensus 437 ~~~~~~~v~~vaWSptrpavF~~~d~~G~l~iWDLl~~~~~P---------v~s~~~---------~-~~~l~~~~~s~~ 497 (555)
T KOG1587|consen 437 LDSSPDYVTDVAWSPTRPAVFATVDGDGNLDIWDLLQDDEEP---------VLSQKV---------C-SPALTRVRWSPN 497 (555)
T ss_pred hhhccceeeeeEEcCcCceEEEEEcCCCceehhhhhccccCC---------cccccc---------c-ccccceeecCCC
Confidence 222445699999999999999999999999999998543211 111111 1 224788899999
Q ss_pred CCEEEEEeCCCcEEEEECCC
Q 004477 291 GEEVLLSYSGEHVYLMDVNH 310 (751)
Q Consensus 291 g~~Ll~~s~d~~I~lwdl~~ 310 (751)
|+.|++|...|.+++|++..
T Consensus 498 g~~lavGd~~G~~~~~~l~~ 517 (555)
T KOG1587|consen 498 GKLLAVGDANGTTHILKLSE 517 (555)
T ss_pred CcEEEEecCCCcEEEEEcCc
Confidence 99999999999999999976
No 187
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.56 E-value=2.7e-12 Score=142.22 Aligned_cols=206 Identities=19% Similarity=0.175 Sum_probs=136.8
Q ss_pred CCcEEEEeCCCC-eEEEEecccCCcceEEEEEecCCCCcEEEEEECCCcEEEEECCCCCCCCCCCCCCCCceeecccCCc
Q 004477 71 DTHINVWSYSSR-KLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRR 149 (751)
Q Consensus 71 Dg~I~IWd~~~~-~~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~Dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~ 149 (751)
++.+.||++... .....+ .-...|.|++|+|.. ..+++.|..+|.|.+||+........ ........+|..+
T Consensus 221 ~~~~~vW~~~~p~~Pe~~~--~~~s~v~~~~f~p~~-p~ll~gG~y~GqV~lWD~~~~~~~~~----s~ls~~~~sh~~~ 293 (555)
T KOG1587|consen 221 DGVLLVWSLKNPNTPELVL--ESPSEVTCLKFCPFD-PNLLAGGCYNGQVVLWDLRKGSDTPP----SGLSALEVSHSEP 293 (555)
T ss_pred CceEEEEecCCCCCceEEE--ecCCceeEEEeccCC-cceEEeeccCceEEEEEccCCCCCCC----cccccccccCCcC
Confidence 357999999866 233333 457889999999997 78999999999999999997543211 0112233569999
Q ss_pred eeEEEEecCCC-CEEEEEeCCCcEEEEecCCCCCCCCCCCCCCccceEEEecccCceecccCCCCCccceEEEEEeCCCC
Q 004477 150 VKKLAVEVGNP-HVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRP 228 (751)
Q Consensus 150 V~~l~~sp~~~-~~l~s~s~Dg~I~iwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~ 228 (751)
|..+.|...-. .-|++++.||.|..|+++.-........ .+... ...........+++++|.|.++
T Consensus 294 v~~vvW~~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~---------~~~~~----~~~~~~~~~~~~t~~~F~~~~p 360 (555)
T KOG1587|consen 294 VTAVVWLQNEHNTEFFSLSSDGSICSWDTDMLSLPVEGLL---------LESKK----HKGQQSSKAVGATSLKFEPTDP 360 (555)
T ss_pred eEEEEEeccCCCCceEEEecCCcEeeeeccccccchhhcc---------ccccc----ccccccccccceeeEeeccCCC
Confidence 99999976221 3478999999999999887553211100 00000 0011112346789999999999
Q ss_pred cEEEEEeCCCeEEEEeCCCCCCccccCCCCCCCCccccccccccccCCccccceEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 004477 229 HLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDV 308 (751)
Q Consensus 229 ~~l~sgs~D~~IriwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~vt~v~fspdg~~Ll~~s~d~~I~lwdl 308 (751)
..+++|+.+|.|.--.....++... ..|. .+..-..|.+ +|+.+.++|=+..++.++.|-+|+||.-
T Consensus 361 ~~FiVGTe~G~v~~~~r~g~~~~~~-----------~~~~-~~~~~~~h~g-~v~~v~~nPF~~k~fls~gDW~vriWs~ 427 (555)
T KOG1587|consen 361 NHFIVGTEEGKVYKGCRKGYTPAPE-----------VSYK-GHSTFITHIG-PVYAVSRNPFYPKNFLSVGDWTVRIWSE 427 (555)
T ss_pred ceEEEEcCCcEEEEEeccCCccccc-----------cccc-ccccccccCc-ceEeeecCCCccceeeeeccceeEeccc
Confidence 9999999999998755443322110 0111 1111122333 6999999998887777777999999975
Q ss_pred C
Q 004477 309 N 309 (751)
Q Consensus 309 ~ 309 (751)
.
T Consensus 428 ~ 428 (555)
T KOG1587|consen 428 D 428 (555)
T ss_pred c
Confidence 5
No 188
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.55 E-value=8.1e-14 Score=138.56 Aligned_cols=248 Identities=16% Similarity=0.192 Sum_probs=170.4
Q ss_pred ccccchhhhccccccEEeccCCCcEEEEEECC--CCCEEEEEeCCCcEEEEeCCCCeEEEEec-ccCC-cceEEEEEecC
Q 004477 29 SLQMHSSLVRRLSQERELEGHQGCVNAISWNS--KGSLLISGSDDTHINVWSYSSRKLLHSIE-TGHS-ANVFCTKFVPE 104 (751)
Q Consensus 29 ~l~~~~~~i~~~~~~~~L~gH~~~V~~l~~s~--dg~~LaSgs~Dg~I~IWd~~~~~~~~~l~-~~h~-~~V~~v~fsp~ 104 (751)
.+++++. .+++...++++|.+.++.+.|.. .+..+.||+.||+|++||+........+. +.|. .+..|++-.-.
T Consensus 51 sv~lyd~--~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f~~ld~nck 128 (376)
T KOG1188|consen 51 SVRLYDK--GTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTPFICLDLNCK 128 (376)
T ss_pred eEEEEec--cchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCcceEeeccCc
Confidence 4444443 34678889999999999999987 56789999999999999998765554432 4555 34455554433
Q ss_pred CCCcEEEEEE----CCCcEEEEECCCCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCC
Q 004477 105 TSDELVVSGA----GDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQG 180 (751)
Q Consensus 105 s~~~~l~sgs----~Dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~ 180 (751)
++++++|. .|-.|.+||++..+. ..-.....|.+-|+++.|+|.++++|+|||-||-|-+||+...
T Consensus 129 --~~ii~~GtE~~~s~A~v~lwDvR~~qq--------~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d 198 (376)
T KOG1188|consen 129 --KNIIACGTELTRSDASVVLWDVRSEQQ--------LLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKD 198 (376)
T ss_pred --CCeEEeccccccCceEEEEEEeccccc--------hhhhhhhhccCcceeEEecCCCCCeEEeecccceEEeeecCCC
Confidence 57777774 477899999997532 1233457899999999999999999999999999999999875
Q ss_pred CCCCCCCCCCCccceEEEecccCceecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCccccCCCCC-
Q 004477 181 SSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMS- 259 (751)
Q Consensus 181 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~~~~~~~~~- 259 (751)
.. .+....++ .+...|.++.|....-+.|.+-+...+..+|++..+.+...+..+..
T Consensus 199 ~E--------eDaL~~vi--------------N~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~~~~~~~~~~~ 256 (376)
T KOG1188|consen 199 NE--------EDALLHVI--------------NHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSEETWLENPDVS 256 (376)
T ss_pred cc--------hhhHHHhh--------------cccceeeeeeeecCCcceEEEEEccCceeEEEccCCChhhcccCccch
Confidence 31 11111111 14556889999886556788888889999999988775444322210
Q ss_pred ------------------C---------CCc---cccc-----ccccc-----ccCCccccceEEEEEcCCCCEEEEEeC
Q 004477 260 ------------------P---------PPC---VNYF-----CPMHL-----SEHGRSSLHLTHVTFSPNGEEVLLSYS 299 (751)
Q Consensus 260 ------------------~---------~~~---~~~~-----~~~~~-----~~~g~~~~~vt~v~fspdg~~Ll~~s~ 299 (751)
+ ..+ ...| .++.. ...|+...-|.++.|...+..+++|+.
T Consensus 257 ~~d~r~~~~~dY~I~~~~~~~~~~~~l~g~~~n~~~~~~~~~~~s~~~~~~~a~l~g~~~eiVR~i~~~~~~~~l~TGGE 336 (376)
T KOG1188|consen 257 ADDLRKEDNCDYVINEHSPGDKDTCALAGTDSNKGTIFPLVDTSSGSLLTEPAILQGGHEEIVRDILFDVKNDVLYTGGE 336 (376)
T ss_pred hhhHHhhhhhhheeecccCCCcceEEEeccccCceeEEEeeecccccccCccccccCCcHHHHHHHhhhcccceeeccCC
Confidence 0 000 0000 00000 012322234778888888999999999
Q ss_pred CCcEEEEECCC
Q 004477 300 GEHVYLMDVNH 310 (751)
Q Consensus 300 d~~I~lwdl~~ 310 (751)
||.+.+|....
T Consensus 337 DG~l~~Wk~~d 347 (376)
T KOG1188|consen 337 DGLLQAWKVED 347 (376)
T ss_pred CceEEEEecCC
Confidence 99999998644
No 189
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.50 E-value=2.1e-11 Score=127.93 Aligned_cols=218 Identities=14% Similarity=0.171 Sum_probs=139.5
Q ss_pred ccccccchhhhccccccEEe-ccCCCcEEEEEECC--CCCEEEEEeCCCcEEEEeCCCC----------eEEEEecccCC
Q 004477 27 NHSLQMHSSLVRRLSQEREL-EGHQGCVNAISWNS--KGSLLISGSDDTHINVWSYSSR----------KLLHSIETGHS 93 (751)
Q Consensus 27 ~~~l~~~~~~i~~~~~~~~L-~gH~~~V~~l~~s~--dg~~LaSgs~Dg~I~IWd~~~~----------~~~~~l~~~h~ 93 (751)
+.++.+|+.+ ..|+.+.+ .||...|.+++|-| +.++++||+.|..|+|+|+..- .....+ ..|.
T Consensus 71 D~r~ivWd~~--~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~lfdl~~~~~~~~d~~~~~~~~~~-~cht 147 (758)
T KOG1310|consen 71 DTRLIVWDPF--EYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIKLFDLDSSKEGGMDHGMEETTRCW-SCHT 147 (758)
T ss_pred cceEEeecch--hcceeeeeecccccceeEEeeeccCCCeEEEeccCcceEEEEecccccccccccCccchhhhh-hhhh
Confidence 5778888888 34455544 69999999999999 4569999999999999998741 122223 6799
Q ss_pred cceEEEEEecCCCCcEEEEEECCCcEEEEECCCCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCCcEE
Q 004477 94 ANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLR 173 (751)
Q Consensus 94 ~~V~~v~fsp~s~~~~l~sgs~Dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~ 173 (751)
..|--++-.|.. ...+.+++.||+|+-+|++.+..-.........+..+...--..+++..+|..+++|+.|+.|-..+
T Consensus 148 ~rVKria~~p~~-PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~~lielk~ltisp~rp~~laVGgsdpfar 226 (758)
T KOG1310|consen 148 DRVKRIATAPNG-PHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQLIELKCLTISPSRPYYLAVGGSDPFAR 226 (758)
T ss_pred hhhhheecCCCC-CceEEEecCCcceeeecccCCccCCccccccHHHHHhchhhheeeeeeecCCCCceEEecCCCchhh
Confidence 999999999984 5899999999999999998642111100000111112222345789999999999999999999999
Q ss_pred EEecCCCCCCCCCCCC-----CCccceEEEecccCceecccC-CCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCC
Q 004477 174 QHDFRQGSSCPPAGSS-----HQECRNILLDLRCGAKRSLAD-PPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRM 247 (751)
Q Consensus 174 iwDlr~~~~~~~~~~~-----~~~~~~~l~~~~~~~~~~~~~-~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~ 247 (751)
+||.|...+....... ...|..+-+-. .+....... .......++-+.|+|++ .-|++.-..-.|+++|+..
T Consensus 227 LYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~-p~hlkn~~gn~~~~~~~~t~vtfnpNG-tElLvs~~gEhVYlfdvn~ 304 (758)
T KOG1310|consen 227 LYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFS-PGHLKNSQGNLDRYITCCTYVTFNPNG-TELLVSWGGEHVYLFDVNE 304 (758)
T ss_pred hhhhhhhccCCCCCccccCCCCcccchhheec-CccccCcccccccceeeeEEEEECCCC-cEEEEeeCCeEEEEEeecC
Confidence 9997654332111111 11222111110 011000000 00111236678899964 5555555556899999987
Q ss_pred CCC
Q 004477 248 LPP 250 (751)
Q Consensus 248 ~~~ 250 (751)
.+.
T Consensus 305 ~~~ 307 (758)
T KOG1310|consen 305 DKS 307 (758)
T ss_pred CCC
Confidence 664
No 190
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.48 E-value=2.2e-12 Score=143.41 Aligned_cols=224 Identities=13% Similarity=0.117 Sum_probs=144.6
Q ss_pred cEEeccCCCcEEEEEECCCCCEEEEEeCC---CcEEEEeCCCCeE--EEEecccCCcceEEEEEecCCCCcEEEEE-ECC
Q 004477 43 ERELEGHQGCVNAISWNSKGSLLISGSDD---THINVWSYSSRKL--LHSIETGHSANVFCTKFVPETSDELVVSG-AGD 116 (751)
Q Consensus 43 ~~~L~gH~~~V~~l~~s~dg~~LaSgs~D---g~I~IWd~~~~~~--~~~l~~~h~~~V~~v~fsp~s~~~~l~sg-s~D 116 (751)
.+.|..|...|...+|+|||+.||.++.+ ..|.+||+.+++. +..+ .+| ...++|+|+ |+.|+.+ +.+
T Consensus 196 ~~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~-~g~---~~~~~wSPD--G~~La~~~~~~ 269 (429)
T PRK01742 196 QFIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVASF-RGH---NGAPAFSPD--GSRLAFASSKD 269 (429)
T ss_pred ceEeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEecC-CCc---cCceeECCC--CCEEEEEEecC
Confidence 45677888899999999999999988754 3699999987753 2222 333 457899999 7777765 468
Q ss_pred CcEEEEECCCCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCCCCCCCCCCccceE
Q 004477 117 AEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNI 196 (751)
Q Consensus 117 g~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~~~~~~~~~~~~ 196 (751)
+.+.||.+.... .....+..+...+....|+|++..+++++..+|...+|++...... ..
T Consensus 270 g~~~Iy~~d~~~---------~~~~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~-----------~~ 329 (429)
T PRK01742 270 GVLNIYVMGANG---------GTPSQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGG-----------AS 329 (429)
T ss_pred CcEEEEEEECCC---------CCeEeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCC-----------eE
Confidence 877766443211 1234555677778899999954444545557888999987643211 00
Q ss_pred EEecccCceecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCccccCCCCCCCCccccccccccccCC
Q 004477 197 LLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHG 276 (751)
Q Consensus 197 l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 276 (751)
+ + . +.. ....|+|+ +++|+.++.++ +.+||+.+++.... .. .
T Consensus 330 ~----------l-~---~~~--~~~~~SpD-G~~ia~~~~~~-i~~~Dl~~g~~~~l--------------t~------~ 371 (429)
T PRK01742 330 L----------V-G---GRG--YSAQISAD-GKTLVMINGDN-VVKQDLTSGSTEVL--------------SS------T 371 (429)
T ss_pred E----------e-c---CCC--CCccCCCC-CCEEEEEcCCC-EEEEECCCCCeEEe--------------cC------C
Confidence 0 0 0 111 34679995 77887777765 45589876542110 00 0
Q ss_pred ccccceEEEEEcCCCCEEEEEeCCCcEEEEECC--CCCcceeeeecCCCceeEEeCCCC
Q 004477 277 RSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVN--HAGGRAMRYTVGDASKIMSFTPTL 333 (751)
Q Consensus 277 ~~~~~vt~v~fspdg~~Ll~~s~d~~I~lwdl~--~~~~~~~~~~~~~~~~~~~~sp~~ 333 (751)
. ...++.|+|||++|+.++.++.+.+|.+. ++........+.......+|+|..
T Consensus 372 ~---~~~~~~~sPdG~~i~~~s~~g~~~~l~~~~~~G~~~~~l~~~~g~~~~p~wsp~~ 427 (429)
T PRK01742 372 F---LDESPSISPNGIMIIYSSTQGLGKVLQLVSADGRFKARLPGSDGQVKFPAWSPYL 427 (429)
T ss_pred C---CCCCceECCCCCEEEEEEcCCCceEEEEEECCCCceEEccCCCCCCCCcccCCCC
Confidence 0 12457799999999999999888888763 233333333344455667777753
No 191
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.47 E-value=1.9e-12 Score=138.04 Aligned_cols=172 Identities=13% Similarity=0.113 Sum_probs=123.8
Q ss_pred ceEEEEEecCCCCcEEEEEECCCcEEEEECCCCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCCcEEE
Q 004477 95 NVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQ 174 (751)
Q Consensus 95 ~V~~v~fsp~s~~~~l~sgs~Dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~i 174 (751)
.|..++|-|+ |..|+.++ +..+.|||...+ ..++++++|.+.|++++|+. +|..|+||+.|+.|.+
T Consensus 14 ci~d~afkPD--GsqL~lAA-g~rlliyD~ndG----------~llqtLKgHKDtVycVAys~-dGkrFASG~aDK~VI~ 79 (1081)
T KOG1538|consen 14 CINDIAFKPD--GTQLILAA-GSRLLVYDTSDG----------TLLQPLKGHKDTVYCVAYAK-DGKRFASGSADKSVII 79 (1081)
T ss_pred chheeEECCC--CceEEEec-CCEEEEEeCCCc----------ccccccccccceEEEEEEcc-CCceeccCCCceeEEE
Confidence 7999999999 66666654 467999999975 45889999999999999999 7899999999999999
Q ss_pred EecCCCCCCCCCCCCCCccceEEEecccCceecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCcccc
Q 004477 175 HDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSC 254 (751)
Q Consensus 175 wDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~~~~ 254 (751)
|.-.-... + .-.|...|.|+.|+|- .+.+++++-. ..-+|......
T Consensus 80 W~~klEG~--------------L-------------kYSH~D~IQCMsFNP~-~h~LasCsLs-dFglWS~~qK~----- 125 (1081)
T KOG1538|consen 80 WTSKLEGI--------------L-------------KYSHNDAIQCMSFNPI-THQLASCSLS-DFGLWSPEQKS----- 125 (1081)
T ss_pred ecccccce--------------e-------------eeccCCeeeEeecCch-HHHhhhcchh-hccccChhhhh-----
Confidence 97432211 0 0127788999999996 6778877654 34567654211
Q ss_pred CCCCCCCCccccccccccccCCccccceEEEEEcCCCCEEEEEeCCCcEEEEECCCCCcceeee--ecCCCceeEEeCCC
Q 004477 255 QKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRY--TVGDASKIMSFTPT 332 (751)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~~g~~~~~vt~v~fspdg~~Ll~~s~d~~I~lwdl~~~~~~~~~~--~~~~~~~~~~~sp~ 332 (751)
+..+ .....+.+++|..||++|+.|..+|+|.|=+-.......... +...++..++|+|.
T Consensus 126 ---------V~K~---------kss~R~~~CsWtnDGqylalG~~nGTIsiRNk~gEek~~I~Rpgg~Nspiwsi~~~p~ 187 (1081)
T KOG1538|consen 126 ---------VSKH---------KSSSRIICCSWTNDGQYLALGMFNGTISIRNKNGEEKVKIERPGGSNSPIWSICWNPS 187 (1081)
T ss_pred ---------HHhh---------hhheeEEEeeecCCCcEEEEeccCceEEeecCCCCcceEEeCCCCCCCCceEEEecCC
Confidence 1111 123358999999999999999999999998654422222222 12345566677664
No 192
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.47 E-value=4.2e-12 Score=120.75 Aligned_cols=231 Identities=14% Similarity=0.176 Sum_probs=149.6
Q ss_pred cEEEEEECCCCCEEEEEeCCCcEEEEeCCC---------Ce-EEEEecccCCcceEEEEEecCCCCcEEEEEECCCcEEE
Q 004477 52 CVNAISWNSKGSLLISGSDDTHINVWSYSS---------RK-LLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRL 121 (751)
Q Consensus 52 ~V~~l~~s~dg~~LaSgs~Dg~I~IWd~~~---------~~-~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~Dg~V~v 121 (751)
.|.+-+|+|.+++|+.|+.+|+|-+..+.+ ++ .+... ++|.++|+.++|.. .+|++|+ ||.|+=
T Consensus 12 tvf~qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~e-qahdgpiy~~~f~d----~~Lls~g-dG~V~g 85 (325)
T KOG0649|consen 12 TVFAQAISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPE-QAHDGPIYYLAFHD----DFLLSGG-DGLVYG 85 (325)
T ss_pred HHHHHhhCCcceEEEEecCCCeEEEEEehhhhccccCCCCCcceeec-cccCCCeeeeeeeh----hheeecc-CceEEE
Confidence 455668999999999999999999998752 22 33334 79999999999993 5788876 599999
Q ss_pred EECCCCCCCCCCCCCC---CCceeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCCCCCCCCCCccceEEE
Q 004477 122 FNLSRFSGRGLDDNAI---TPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILL 198 (751)
Q Consensus 122 wd~~~~~~~~~~~~~~---~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~~~~~~~~~~~~l~ 198 (751)
|............... .|.++-.----.|+++-..|..+.+ +.++.|+.++.||+++++.
T Consensus 86 w~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi-~~AgGD~~~y~~dlE~G~i---------------- 148 (325)
T KOG0649|consen 86 WEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSI-LFAGGDGVIYQVDLEDGRI---------------- 148 (325)
T ss_pred eeehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcE-EEecCCeEEEEEEecCCEE----------------
Confidence 9876432200000000 0111101112357888888855444 4666999999999999862
Q ss_pred ecccCceecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCccccCCCCCCCCccccccccccccCCcc
Q 004477 199 DLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRS 278 (751)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 278 (751)
.....+|...|.++.--. ....+++|+.||++||||.++.+.+..+..- ..+.|. +.|.
T Consensus 149 ---------~r~~rGHtDYvH~vv~R~-~~~qilsG~EDGtvRvWd~kt~k~v~~ie~y-k~~~~l----------Rp~~ 207 (325)
T KOG0649|consen 149 ---------QREYRGHTDYVHSVVGRN-ANGQILSGAEDGTVRVWDTKTQKHVSMIEPY-KNPNLL----------RPDW 207 (325)
T ss_pred ---------EEEEcCCcceeeeeeecc-cCcceeecCCCccEEEEeccccceeEEeccc-cChhhc----------Cccc
Confidence 123345888898888744 2468999999999999999998765544211 111111 2233
Q ss_pred ccceEEEEEcCCCCEEEEEeCCCcEEEEECCCCCcceeeeecCCCceeEEeC
Q 004477 279 SLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVGDASKIMSFT 330 (751)
Q Consensus 279 ~~~vt~v~fspdg~~Ll~~s~d~~I~lwdl~~~~~~~~~~~~~~~~~~~~~s 330 (751)
+.+|.+++-+.| +|++ +....+.||.+...... ..+.....+..+.|.
T Consensus 208 g~wigala~~ed--WlvC-GgGp~lslwhLrsse~t-~vfpipa~v~~v~F~ 255 (325)
T KOG0649|consen 208 GKWIGALAVNED--WLVC-GGGPKLSLWHLRSSEST-CVFPIPARVHLVDFV 255 (325)
T ss_pred CceeEEEeccCc--eEEe-cCCCceeEEeccCCCce-EEEecccceeEeeee
Confidence 446777766544 5554 45668999999995533 334333444444443
No 193
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.45 E-value=1.4e-11 Score=140.33 Aligned_cols=193 Identities=18% Similarity=0.237 Sum_probs=134.0
Q ss_pred EeCCCCeEEEEecccCCcceEEEEEecCCCCcEEEEEECCCcEEEEECCCCCCCCCCCCCCCCceeecccCCceeEEEEe
Q 004477 77 WSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVE 156 (751)
Q Consensus 77 Wd~~~~~~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~Dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s 156 (751)
|++ .|..+..+ ..|...|..++.++.+ +.+|+|||.||+|++|+.....+.. ...+...++.--..++..+.+.
T Consensus 1034 W~p-~G~lVAhL-~Ehs~~v~k~a~s~~~-~s~FvsgS~DGtVKvW~~~k~~~~~---~s~rS~ltys~~~sr~~~vt~~ 1107 (1431)
T KOG1240|consen 1034 WNP-RGILVAHL-HEHSSAVIKLAVSSEH-TSLFVSGSDDGTVKVWNLRKLEGEG---GSARSELTYSPEGSRVEKVTMC 1107 (1431)
T ss_pred CCc-cceEeehh-hhccccccceeecCCC-CceEEEecCCceEEEeeehhhhcCc---ceeeeeEEEeccCCceEEEEec
Confidence 665 47788888 7899999999999885 6999999999999999998643321 1123344455457788999988
Q ss_pred cCCCCEEEEEeCCCcEEEEecCCCCCCCCCCCCCCccceEEEecccCceecccCCCCCccceEEEEEeCCCCc-EEEEEe
Q 004477 157 VGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPH-LLLVGG 235 (751)
Q Consensus 157 p~~~~~l~s~s~Dg~I~iwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~-~l~sgs 235 (751)
+ +++.||.++.||.|++.++....... ..+.. ..+....+....|..-+|...... .++.+.
T Consensus 1108 ~-~~~~~Av~t~DG~v~~~~id~~~~~~------~~~~~----------~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T 1170 (1431)
T KOG1240|consen 1108 G-NGDQFAVSTKDGSVRVLRIDHYNVSK------RVATQ----------VRIPNLKKDGVVVSMHAFTAIVQSHVLVYAT 1170 (1431)
T ss_pred c-CCCeEEEEcCCCeEEEEEcccccccc------ceeee----------eecccccCCCceEEeecccccccceeEEEEE
Confidence 8 77899999999999999987632110 00000 001111111222333344433333 788888
Q ss_pred CCCeEEEEeCCCCCCccccCCCCCCCCccccccccccccCCccccceEEEEEcCCCCEEEEEeCCCcEEEEECCCC
Q 004477 236 SDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHA 311 (751)
Q Consensus 236 ~D~~IriwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~vt~v~fspdg~~Ll~~s~d~~I~lwdl~~~ 311 (751)
.-+.|..||+++......++. ....+.|++++.+|.++++++|+..|.+-+||++-.
T Consensus 1171 ~~~~iv~~D~r~~~~~w~lk~-------------------~~~hG~vTSi~idp~~~WlviGts~G~l~lWDLRF~ 1227 (1431)
T KOG1240|consen 1171 DLSRIVSWDTRMRHDAWRLKN-------------------QLRHGLVTSIVIDPWCNWLVIGTSRGQLVLWDLRFR 1227 (1431)
T ss_pred eccceEEecchhhhhHHhhhc-------------------CccccceeEEEecCCceEEEEecCCceEEEEEeecC
Confidence 889999999998764433211 011225999999999999999999999999999873
No 194
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.44 E-value=3.6e-12 Score=142.74 Aligned_cols=261 Identities=15% Similarity=0.242 Sum_probs=179.9
Q ss_pred CCCchHHHHHhhhccCcC----cccccccccchhhhcc---ccccEE---eccCC----CcEEEEEECCCCCEEEEEeCC
Q 004477 6 FHDGSIYDMLDTRHTDTR----PDVNHSLQMHSSLVRR---LSQERE---LEGHQ----GCVNAISWNSKGSLLISGSDD 71 (751)
Q Consensus 6 ~~~~~~~~~l~~r~~~~~----~~~~~~l~~~~~~i~~---~~~~~~---L~gH~----~~V~~l~~s~dg~~LaSgs~D 71 (751)
|.+-+++++.--.+.... ..-+..+++|+++... .+++.- |.++. +.=.-+.|.....+|+++|+-
T Consensus 1107 ~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~ 1186 (1387)
T KOG1517|consen 1107 FPDTRVSDLELINEQDDALLLTASSDGVIRIWKDYADKWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGDV 1186 (1387)
T ss_pred CCCCccceeeeecccchhheeeeccCceEEEecccccccCCceeEEeeccccccCccCCCCCeeeehhhhCCeEEecCCe
Confidence 445555555444444332 4457788899887654 333332 22221 111346787765566666668
Q ss_pred CcEEEEeCCCCeEEEEecccCCcceEEEEEecCCCCcEEEEEECCCcEEEEECCCCCCCCCCCCCCCCceeecccCCc--
Q 004477 72 THINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRR-- 149 (751)
Q Consensus 72 g~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~Dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~-- 149 (751)
..|+|||.....++..+..+-...|+++.-.-.. |+.|+.|-.||.|++||.+..... ..+...+.|+..
T Consensus 1187 r~IRIWDa~~E~~~~diP~~s~t~vTaLS~~~~~-gn~i~AGfaDGsvRvyD~R~a~~d-------s~v~~~R~h~~~~~ 1258 (1387)
T KOG1517|consen 1187 RSIRIWDAHKEQVVADIPYGSSTLVTALSADLVH-GNIIAAGFADGSVRVYDRRMAPPD-------SLVCVYREHNDVEP 1258 (1387)
T ss_pred eEEEEEecccceeEeecccCCCccceeecccccC-CceEEEeecCCceEEeecccCCcc-------ccceeecccCCccc
Confidence 8999999999999998877777788888766554 799999999999999999975433 347788889988
Q ss_pred eeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCCCCCCCCCCccceEEEecccCceecccCCCCCccceEEEEEeCCCCc
Q 004477 150 VKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPH 229 (751)
Q Consensus 150 V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~ 229 (751)
|..+.+.+.+-..|++|+.||.|++||+|....... ..+... -.....++++.+++. ..
T Consensus 1259 Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~~--------~~iv~~------------~~yGs~lTal~VH~h-ap 1317 (1387)
T KOG1517|consen 1259 IVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKETF--------LTIVAH------------WEYGSALTALTVHEH-AP 1317 (1387)
T ss_pred ceeEEeecCCCcceeeeccCCeEEEEecccCccccc--------ceeeec------------cccCccceeeeeccC-CC
Confidence 999999884444588999999999999998521100 000000 001124899999994 78
Q ss_pred EEEEEeCCCeEEEEeCCCCCCccccCCCCCCCCccccccccccccCCccccceEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 004477 230 LLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVN 309 (751)
Q Consensus 230 ~l~sgs~D~~IriwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~vt~v~fspdg~~Ll~~s~d~~I~lwdl~ 309 (751)
.+++|+. +.|+||++.-.+ +..+ + +.+..+ +.....+++++|+|---.|++|+.|..|.||...
T Consensus 1318 iiAsGs~-q~ikIy~~~G~~-l~~~----------k-~n~~F~---~q~~gs~scL~FHP~~~llAaG~~Ds~V~iYs~~ 1381 (1387)
T KOG1517|consen 1318 IIASGSA-QLIKIYSLSGEQ-LNII----------K-YNPGFM---GQRIGSVSCLAFHPHRLLLAAGSADSTVSIYSCE 1381 (1387)
T ss_pred eeeecCc-ceEEEEecChhh-hccc----------c-cCcccc---cCcCCCcceeeecchhHhhhhccCCceEEEeecC
Confidence 9999988 999999986432 1111 1 112211 2233358999999999999999999999999877
Q ss_pred CC
Q 004477 310 HA 311 (751)
Q Consensus 310 ~~ 311 (751)
..
T Consensus 1382 k~ 1383 (1387)
T KOG1517|consen 1382 KP 1383 (1387)
T ss_pred Cc
Confidence 64
No 195
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.44 E-value=4.9e-11 Score=120.28 Aligned_cols=217 Identities=20% Similarity=0.323 Sum_probs=148.7
Q ss_pred CcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEeccc--CCcceEEEEEecCCCCcEEEE--EECCCcEEEEECCC
Q 004477 51 GCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETG--HSANVFCTKFVPETSDELVVS--GAGDAEVRLFNLSR 126 (751)
Q Consensus 51 ~~V~~l~~s~dg~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~--h~~~V~~v~fsp~s~~~~l~s--gs~Dg~V~vwd~~~ 126 (751)
..|.+|.++ -++|+.+=.+ .|.|||+.+.+.++++..- +...+ ++++|+..+.+++- .-.-|.|.|||+..
T Consensus 88 t~IL~VrmN--r~RLvV~Lee-~IyIydI~~MklLhTI~t~~~n~~gl--~AlS~n~~n~ylAyp~s~t~GdV~l~d~~n 162 (391)
T KOG2110|consen 88 TSILAVRMN--RKRLVVCLEE-SIYIYDIKDMKLLHTIETTPPNPKGL--CALSPNNANCYLAYPGSTTSGDVVLFDTIN 162 (391)
T ss_pred CceEEEEEc--cceEEEEEcc-cEEEEecccceeehhhhccCCCccce--EeeccCCCCceEEecCCCCCceEEEEEccc
Confidence 456666665 3477777665 4999999999999998544 44444 44555543677773 23468999999986
Q ss_pred CCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCCc-EEEEecCCCCCCCCCCCCCCccceEEEecccCce
Q 004477 127 FSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGT-LRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAK 205 (751)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~-I~iwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~ 205 (751)
- +++..+.+|.+.+-+++|++ +|.+|||+|+.|+ ||+|.+.+++. ++.++.|.
T Consensus 163 l----------~~v~~I~aH~~~lAalafs~-~G~llATASeKGTVIRVf~v~~G~k--------------l~eFRRG~- 216 (391)
T KOG2110|consen 163 L----------QPVNTINAHKGPLAALAFSP-DGTLLATASEKGTVIRVFSVPEGQK--------------LYEFRRGT- 216 (391)
T ss_pred c----------eeeeEEEecCCceeEEEECC-CCCEEEEeccCceEEEEEEcCCccE--------------eeeeeCCc-
Confidence 4 66888999999999999999 7899999999998 57999988763 34444443
Q ss_pred ecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCccccCCCCC---------------CCCc-------
Q 004477 206 RSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMS---------------PPPC------- 263 (751)
Q Consensus 206 ~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~~~~~~~~~---------------~~~~------- 263 (751)
....|.+++|+|+ +.+|++.++-++|+||.+..... ........ .|..
T Consensus 217 --------~~~~IySL~Fs~d-s~~L~~sS~TeTVHiFKL~~~~~-~~~~~p~~~~~~~~~~sk~~~sylps~V~~~~~~ 286 (391)
T KOG2110|consen 217 --------YPVSIYSLSFSPD-SQFLAASSNTETVHIFKLEKVSN-NPPESPTAGTSWFGKVSKAATSYLPSQVSSVLDQ 286 (391)
T ss_pred --------eeeEEEEEEECCC-CCeEEEecCCCeEEEEEeccccc-CCCCCCCCCCcccchhhhhhhhhcchhhhhhhhh
Confidence 2467899999995 78999999999999999876441 11000000 0000
Q ss_pred cccccccccccCCccccceEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 004477 264 VNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNH 310 (751)
Q Consensus 264 ~~~~~~~~~~~~g~~~~~vt~v~fspdg~~Ll~~s~d~~I~lwdl~~ 310 (751)
.+.|.-.++...++. .+..+.-.+...++.+++.||.+|.|.+.-
T Consensus 287 ~R~FAt~~l~~s~~~--~~~~l~~~~~~~~v~vas~dG~~y~y~l~~ 331 (391)
T KOG2110|consen 287 SRKFATAKLPESGRK--NICSLSSIQKIPRVLVASYDGHLYSYRLPP 331 (391)
T ss_pred ccceeEEEccCCCcc--ceEEeeccCCCCEEEEEEcCCeEEEEEcCC
Confidence 011111122222221 244443345889999999999999998876
No 196
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.44 E-value=3.4e-12 Score=126.14 Aligned_cols=205 Identities=15% Similarity=0.166 Sum_probs=153.0
Q ss_pred cccccccchhhhcc-ccccEEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEeC-CCCe--EEEEecccCCcceEEEEE
Q 004477 26 VNHSLQMHSSLVRR-LSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSY-SSRK--LLHSIETGHSANVFCTKF 101 (751)
Q Consensus 26 ~~~~l~~~~~~i~~-~~~~~~L~gH~~~V~~l~~s~dg~~LaSgs~Dg~I~IWd~-~~~~--~~~~l~~~h~~~V~~v~f 101 (751)
-.+.+++++..-.. .++.++|+.|...|++|.|+|.++.|++|+.|..-.||.. ..++ +...+ ..|...+++|.|
T Consensus 30 ~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~~~~~~~WkptlvL-lRiNrAAt~V~W 108 (361)
T KOG1523|consen 30 NNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQPSGGTWKPTLVL-LRINRAATCVKW 108 (361)
T ss_pred CCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeEccCCCCccccccCCCCeeccceeE-EEeccceeeEee
Confidence 34678888888777 7899999999999999999999999999999999999998 4443 34445 578999999999
Q ss_pred ecCCCCcEEEEEECCCcEEEEECCCCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCC
Q 004477 102 VPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGS 181 (751)
Q Consensus 102 sp~s~~~~l~sgs~Dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~ 181 (751)
+|. ++.||+||.-..|.||-++....- .-..+.-+.+...|.++.|+| ++-+++.|+.|+.+|+|..--..
T Consensus 109 sP~--enkFAVgSgar~isVcy~E~ENdW------WVsKhikkPirStv~sldWhp-nnVLlaaGs~D~k~rVfSayIK~ 179 (361)
T KOG1523|consen 109 SPK--ENKFAVGSGARLISVCYYEQENDW------WVSKHIKKPIRSTVTSLDWHP-NNVLLAAGSTDGKCRVFSAYIKG 179 (361)
T ss_pred cCc--CceEEeccCccEEEEEEEecccce------ehhhhhCCccccceeeeeccC-CcceecccccCcceeEEEEeeec
Confidence 999 799999999999999999853211 112334455788899999999 77899999999999999643211
Q ss_pred CCCCCCCCCCccceEEEecccCceecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCC
Q 004477 182 SCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRML 248 (751)
Q Consensus 182 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~ 248 (751)
.- .......|+.+......+........++..+.|+|+ +..|+=.+.|..|.+-|....
T Consensus 180 Vd-------ekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~s-G~~lawv~Hds~v~~~da~~p 238 (361)
T KOG1523|consen 180 VD-------EKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPS-GNRLAWVGHDSTVSFVDAAGP 238 (361)
T ss_pred cc-------cCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCC-CCEeeEecCCCceEEeecCCC
Confidence 00 000011122111112222333346678999999995 789999999999999887654
No 197
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.44 E-value=1.5e-13 Score=149.94 Aligned_cols=247 Identities=19% Similarity=0.320 Sum_probs=182.6
Q ss_pred ccccccchhhhccccccEEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEecccCCcceEEEEEecCCC
Q 004477 27 NHSLQMHSSLVRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETS 106 (751)
Q Consensus 27 ~~~l~~~~~~i~~~~~~~~L~gH~~~V~~l~~s~dg~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~s~ 106 (751)
+..+++|+ ..+..+...+.||.+.|+.++.+.+..++|++|.|..|++|.+.++.++..+ .||++.|++++|+|-
T Consensus 211 d~lvKiwS--~et~~~lAs~rGhs~ditdlavs~~n~~iaaaS~D~vIrvWrl~~~~pvsvL-rghtgavtaiafsP~-- 285 (1113)
T KOG0644|consen 211 DRLVKIWS--METARCLASCRGHSGDITDLAVSSNNTMIAAASNDKVIRVWRLPDGAPVSVL-RGHTGAVTAIAFSPR-- 285 (1113)
T ss_pred cceeeeee--ccchhhhccCCCCccccchhccchhhhhhhhcccCceEEEEecCCCchHHHH-hccccceeeeccCcc--
Confidence 56778888 6677789999999999999999999999999999999999999999999888 899999999999998
Q ss_pred CcEEEEEECCCcEEEEECCCCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCC---
Q 004477 107 DELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSC--- 183 (751)
Q Consensus 107 ~~~l~sgs~Dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~--- 183 (751)
.+.+.||++++||.+-..-... -.|.. + .-...|.++-|.. ++.-++|++.|+.-+.|.+..-..-
T Consensus 286 ----~sss~dgt~~~wd~r~~~~~y~----prp~~-~-~~~~~~~s~~~~~-~~~~f~Tgs~d~ea~n~e~~~l~~~~~~ 354 (1113)
T KOG0644|consen 286 ----ASSSDDGTCRIWDARLEPRIYV----PRPLK-F-TEKDLVDSILFEN-NGDRFLTGSRDGEARNHEFEQLAWRSNL 354 (1113)
T ss_pred ----ccCCCCCceEeccccccccccC----CCCCC-c-ccccceeeeeccc-cccccccccCCcccccchhhHhhhhccc
Confidence 2778999999999982110000 01111 1 1234566676766 5567889999998887765432110
Q ss_pred -----------CCCCCCCCccceEEEecccCceecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCcc
Q 004477 184 -----------PPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLT 252 (751)
Q Consensus 184 -----------~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~~ 252 (751)
.........+...+|++..|.. +....+|...+..+.++|-+++...+++.||...|||+-.+.++.
T Consensus 355 lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l--~H~l~ghsd~~yvLd~Hpfn~ri~msag~dgst~iwdi~eg~pik 432 (1113)
T KOG0644|consen 355 LIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQL--LHNLMGHSDEVYVLDVHPFNPRIAMSAGYDGSTIIWDIWEGIPIK 432 (1113)
T ss_pred eEEEeccccccccceeeeeeeEeeeeecccchh--hhhhcccccceeeeeecCCCcHhhhhccCCCceEeeecccCCcce
Confidence 0001122334455666666543 233445778899999999999999999999999999998876543
Q ss_pred ccCCCCCCCCccccccccccccCCccccceEEEEEcCCCCEEEEEeCCCcEEEEECCCCC
Q 004477 253 SCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAG 312 (751)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~vt~v~fspdg~~Ll~~s~d~~I~lwdl~~~~ 312 (751)
.+ + .+|. .+...+||+||..++..-.-|+++|+....+.
T Consensus 433 ~y------------~-------~gh~--kl~d~kFSqdgts~~lsd~hgql~i~g~gqs~ 471 (1113)
T KOG0644|consen 433 HY------------F-------IGHG--KLVDGKFSQDGTSIALSDDHGQLYILGTGQSK 471 (1113)
T ss_pred ee------------e-------cccc--eeeccccCCCCceEecCCCCCceEEeccCCCc
Confidence 32 2 2232 36778999999999998888999999876643
No 198
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.44 E-value=8.7e-11 Score=126.24 Aligned_cols=196 Identities=14% Similarity=0.142 Sum_probs=120.2
Q ss_pred EEEEeCCCcEEEEeCCC-Ce--EEEEecccCCcceEEEEEecCCCCcEEEEE-ECCCcEEEEECCCCCCCCCCCCCCCCc
Q 004477 65 LISGSDDTHINVWSYSS-RK--LLHSIETGHSANVFCTKFVPETSDELVVSG-AGDAEVRLFNLSRFSGRGLDDNAITPS 140 (751)
Q Consensus 65 LaSgs~Dg~I~IWd~~~-~~--~~~~l~~~h~~~V~~v~fsp~s~~~~l~sg-s~Dg~V~vwd~~~~~~~~~~~~~~~~~ 140 (751)
+++...|+.|.+|++.+ ++ .+..+ .+.+....+.++|+ +++|+.+ ..++.|.+|++.. .+.. ..+
T Consensus 5 y~~~~~~~~I~~~~~~~~g~l~~~~~~--~~~~~~~~l~~spd--~~~lyv~~~~~~~i~~~~~~~-~g~l------~~~ 73 (330)
T PRK11028 5 YIASPESQQIHVWNLNHEGALTLLQVV--DVPGQVQPMVISPD--KRHLYVGVRPEFRVLSYRIAD-DGAL------TFA 73 (330)
T ss_pred EEEcCCCCCEEEEEECCCCceeeeeEE--ecCCCCccEEECCC--CCEEEEEECCCCcEEEEEECC-CCce------EEe
Confidence 44557799999999964 33 44444 34567888999999 7777655 4588999999972 2211 112
Q ss_pred eeecccCCceeEEEEecCCCCEEEEEe-CCCcEEEEecCCCCCCCCCCCCCCccceEEEecccCceecccCCCCCccceE
Q 004477 141 ALYQCHTRRVKKLAVEVGNPHVVWSAS-EDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLK 219 (751)
Q Consensus 141 ~~~~~h~~~V~~l~~sp~~~~~l~s~s-~Dg~I~iwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~ 219 (751)
.... ..+.+..++|+|++ ++|++++ .++.|.+||+.+...... .+ ...+ ......
T Consensus 74 ~~~~-~~~~p~~i~~~~~g-~~l~v~~~~~~~v~v~~~~~~g~~~~----------~~-----------~~~~-~~~~~~ 129 (330)
T PRK11028 74 AESP-LPGSPTHISTDHQG-RFLFSASYNANCVSVSPLDKDGIPVA----------PI-----------QIIE-GLEGCH 129 (330)
T ss_pred eeec-CCCCceEEEECCCC-CEEEEEEcCCCeEEEEEECCCCCCCC----------ce-----------eecc-CCCccc
Confidence 2221 23356789999954 5555544 589999999974321100 00 0000 112356
Q ss_pred EEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCccccCCCCCCCCccccccccccccCCccccceEEEEEcCCCCEEEEEeC
Q 004477 220 SCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYS 299 (751)
Q Consensus 220 ~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~vt~v~fspdg~~Ll~~s~ 299 (751)
+++++|++..++++...++.|.+||+.+...+.... .... .. ........++|+|+|++|+++..
T Consensus 130 ~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~--------~~~~---~~----~~g~~p~~~~~~pdg~~lyv~~~ 194 (330)
T PRK11028 130 SANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVAQE--------PAEV---TT----VEGAGPRHMVFHPNQQYAYCVNE 194 (330)
T ss_pred EeEeCCCCCEEEEeeCCCCEEEEEEECCCCcccccC--------CCce---ec----CCCCCCceEEECCCCCEEEEEec
Confidence 788999643444566677999999997632211000 0000 00 00112567899999999988876
Q ss_pred -CCcEEEEECCC
Q 004477 300 -GEHVYLMDVNH 310 (751)
Q Consensus 300 -d~~I~lwdl~~ 310 (751)
++.|.+|+++.
T Consensus 195 ~~~~v~v~~~~~ 206 (330)
T PRK11028 195 LNSSVDVWQLKD 206 (330)
T ss_pred CCCEEEEEEEeC
Confidence 89999999975
No 199
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.44 E-value=1.4e-12 Score=137.68 Aligned_cols=194 Identities=19% Similarity=0.288 Sum_probs=142.9
Q ss_pred ccccccccchh------hhccccccEEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCC------CC---eEEEEec
Q 004477 25 DVNHSLQMHSS------LVRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYS------SR---KLLHSIE 89 (751)
Q Consensus 25 ~~~~~l~~~~~------~i~~~~~~~~L~gH~~~V~~l~~s~dg~~LaSgs~Dg~I~IWd~~------~~---~~~~~l~ 89 (751)
..+..|++|.- .-..++++.+|++|.++|.|++..+++..+.||+-||+|+.|++. +. ..+....
T Consensus 313 sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg~Dg~I~~w~~p~n~dp~ds~dp~vl~~~l 392 (577)
T KOG0642|consen 313 SEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGGIDGTIRCWNLPPNQDPDDSYDPSVLSGTL 392 (577)
T ss_pred ccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEEEeeccCceeeeeccCCCCCcccccCcchhccce
Confidence 45667776654 344568899999999999999999999999999999999999543 11 1233333
Q ss_pred ccCCcceEEEEEecCCCCcEEEEEECCCcEEEEECCCCCCCCCCC------------CCCC-------------------
Q 004477 90 TGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDD------------NAIT------------------- 138 (751)
Q Consensus 90 ~~h~~~V~~v~fsp~s~~~~l~sgs~Dg~V~vwd~~~~~~~~~~~------------~~~~------------------- 138 (751)
.||++.|+.+++++. .+.|++|+.||+|++|+........+.. ...+
T Consensus 393 ~Ghtdavw~l~~s~~--~~~Llscs~DgTvr~w~~~~~~~~~f~~~~e~g~Plsvd~~ss~~a~~~~s~~~~~~~~~~~e 470 (577)
T KOG0642|consen 393 LGHTDAVWLLALSST--KDRLLSCSSDGTVRLWEPTEESPCTFGEPKEHGYPLSVDRTSSRPAHSLASFRFGYTSIDDME 470 (577)
T ss_pred eccccceeeeeeccc--ccceeeecCCceEEeeccCCcCccccCCccccCCcceEeeccchhHhhhhhcccccccchhhh
Confidence 899999999999998 5789999999999999987543311100 0000
Q ss_pred ---Cceeecc-------cCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCCCCCCCCCCccceEEEecccCceecc
Q 004477 139 ---PSALYQC-------HTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSL 208 (751)
Q Consensus 139 ---~~~~~~~-------h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 208 (751)
.+..+.. -...+..+.++|. ..+.+++.+|+.|+++|..++...
T Consensus 471 v~s~~~~~~s~~~~~~~~~~~in~vVs~~~-~~~~~~~hed~~Ir~~dn~~~~~l------------------------- 524 (577)
T KOG0642|consen 471 VVSDLLIFESSASPGPRRYPQINKVVSHPT-ADITFTAHEDRSIRFFDNKTGKIL------------------------- 524 (577)
T ss_pred hhhheeeccccCCCcccccCccceEEecCC-CCeeEecccCCceecccccccccc-------------------------
Confidence 0001100 1234566777884 467779999999999999988643
Q ss_pred cCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCC
Q 004477 209 ADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRM 247 (751)
Q Consensus 209 ~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~ 247 (751)
.....|...++++++.|+ +-+|++|+.|+.|++|.+..
T Consensus 525 ~s~~a~~~svtslai~~n-g~~l~s~s~d~sv~l~kld~ 562 (577)
T KOG0642|consen 525 HSMVAHKDSVTSLAIDPN-GPYLMSGSHDGSVRLWKLDV 562 (577)
T ss_pred hheeeccceecceeecCC-CceEEeecCCceeehhhccc
Confidence 222337788999999995 78999999999999998864
No 200
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.42 E-value=1.6e-11 Score=123.68 Aligned_cols=261 Identities=13% Similarity=0.080 Sum_probs=172.4
Q ss_pred hccc-cccEEecc-CCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEecc-cCCcceEEEEEecCCCCcEEEEE
Q 004477 37 VRRL-SQERELEG-HQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIET-GHSANVFCTKFVPETSDELVVSG 113 (751)
Q Consensus 37 i~~~-~~~~~L~g-H~~~V~~l~~s~dg~~LaSgs~Dg~I~IWd~~~~~~~~~l~~-~h~~~V~~v~fsp~s~~~~l~sg 113 (751)
+.+. +++..... |...|.||+|+...+.|.||+.+++|++.|+++.+.+..+.. ...+.|+.+..+|. ++.|++.
T Consensus 90 ~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~~VI~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~--DN~~~~~ 167 (609)
T KOG4227|consen 90 VRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWGTVIKHDIETKQSIYVANENNNRGDVYHMDQHPT--DNTLIVV 167 (609)
T ss_pred hhcCCCCceeccCccccceEEEEEccCCeeEecCCCcceeEeeecccceeeeeecccCcccceeecccCCC--CceEEEE
Confidence 3444 56655543 448999999999999999999999999999999888877621 22358999999999 7999999
Q ss_pred ECCCcEEEEECCCCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCCCCCCC----C
Q 004477 114 AGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGS----S 189 (751)
Q Consensus 114 s~Dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~~~~----~ 189 (751)
+.++.|.+||++..+... .+ ............+.|+|..+.+|++.+..+-+-+||.|.......... .
T Consensus 168 t~~~~V~~~D~Rd~~~~~------~~-~~~AN~~~~F~t~~F~P~~P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L 240 (609)
T KOG4227|consen 168 TRAKLVSFIDNRDRQNPI------SL-VLPANSGKNFYTAEFHPETPALILVNSETGGPNVFDRRMQARPVYQRSMFKGL 240 (609)
T ss_pred ecCceEEEEeccCCCCCC------ce-eeecCCCccceeeeecCCCceeEEeccccCCCCceeeccccchHHhhhccccC
Confidence 999999999998643211 22 222234455678899999999999999999999999998764311000 0
Q ss_pred ---CCccc-------------------eEEEecccCceecccCCCC-----CccceEEEEEeCCCCcEEEEEeCCCeEEE
Q 004477 190 ---HQECR-------------------NILLDLRCGAKRSLADPPK-----QTLSLKSCDISSTRPHLLLVGGSDAFARL 242 (751)
Q Consensus 190 ---~~~~~-------------------~~l~~~~~~~~~~~~~~~~-----~~~~v~~i~~sp~~~~~l~sgs~D~~Iri 242 (751)
..+.- .++++........+..... ....+++|+|--+ +-+++|+.+-.|++
T Consensus 241 ~~~~~~~M~~~~~~~G~Q~msiRR~~~P~~~D~~S~R~~V~k~D~N~~GY~N~~T~KS~~F~~D--~~v~tGSD~~~i~~ 318 (609)
T KOG4227|consen 241 PQENTEWMGSLWSPSGNQFMSIRRGKCPLYFDFISQRCFVLKSDHNPNGYCNIKTIKSMTFIDD--YTVATGSDHWGIHI 318 (609)
T ss_pred cccchhhhheeeCCCCCeehhhhccCCCEEeeeecccceeEeccCCCCcceeeeeeeeeeeecc--eeeeccCcccceEE
Confidence 00011 1223332222221211111 1234677788753 56999999999999
Q ss_pred EeCCCCCCccc---cCCCCCCCCccccccc-cccccCCccccceEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 004477 243 YDRRMLPPLTS---CQKRMSPPPCVNYFCP-MHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNH 310 (751)
Q Consensus 243 wD~~~~~~~~~---~~~~~~~~~~~~~~~~-~~~~~~g~~~~~vt~v~fspdg~~Ll~~s~d~~I~lwdl~~ 310 (751)
|.+.......- +..... ......+.. .....+||.+ -++.|.|+|...+|++++-.+.++||.-..
T Consensus 319 WklP~~~ds~G~~~IG~~~~-~~~~~~~i~~~~~VLrGHRS-v~NQVRF~~H~~~l~SSGVE~~~KlWS~~r 388 (609)
T KOG4227|consen 319 WKLPRANDSYGFTQIGHDEE-EMPSEIFIEKELTVLRGHRS-VPNQVRFSQHNNLLVSSGVENSFKLWSDHR 388 (609)
T ss_pred EecCCCccccCccccCcchh-hCchhheecceeEEEecccc-cccceeecCCcceEeccchhhheecccccc
Confidence 99864332211 111000 000011111 1122367877 489999999999999888899999997554
No 201
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.41 E-value=1.9e-11 Score=116.41 Aligned_cols=210 Identities=18% Similarity=0.244 Sum_probs=144.7
Q ss_pred ccEEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCeE------EEEe-cccCC-----cceEEEEEecCCCCcE
Q 004477 42 QERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKL------LHSI-ETGHS-----ANVFCTKFVPETSDEL 109 (751)
Q Consensus 42 ~~~~L~gH~~~V~~l~~s~dg~~LaSgs~Dg~I~IWd~~~~~~------~~~l-~~~h~-----~~V~~v~fsp~s~~~~ 109 (751)
++...++|.++|+.++|. ..+|++|++ |.|+=|....... +..+ ..-|. -.|+++-..|.. +-
T Consensus 54 ~iv~eqahdgpiy~~~f~--d~~Lls~gd-G~V~gw~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~e--nS 128 (325)
T KOG0649|consen 54 KIVPEQAHDGPIYYLAFH--DDFLLSGGD-GLVYGWEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSE--NS 128 (325)
T ss_pred ceeeccccCCCeeeeeee--hhheeeccC-ceEEEeeehhhhhhccchhhhhhcCccccCcccCCccceeEeccCC--Cc
Confidence 344558999999999998 457888865 9999997643221 1111 01222 458888888884 45
Q ss_pred EEEEECCCcEEEEECCCCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCCCCCCCC
Q 004477 110 VVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSS 189 (751)
Q Consensus 110 l~sgs~Dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~~~~~ 189 (751)
|+.++.|+.++-||++++ +...++++|++.|.++.--..++ .++||++||++|+||+++++.......-
T Consensus 129 i~~AgGD~~~y~~dlE~G----------~i~r~~rGHtDYvH~vv~R~~~~-qilsG~EDGtvRvWd~kt~k~v~~ie~y 197 (325)
T KOG0649|consen 129 ILFAGGDGVIYQVDLEDG----------RIQREYRGHTDYVHSVVGRNANG-QILSGAEDGTVRVWDTKTQKHVSMIEPY 197 (325)
T ss_pred EEEecCCeEEEEEEecCC----------EEEEEEcCCcceeeeeeecccCc-ceeecCCCccEEEEeccccceeEEeccc
Confidence 566669999999999975 55788999999999998744354 4559999999999999998754222111
Q ss_pred CCccceEEEecccCceecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCccccCCCCCCCCccccccc
Q 004477 190 HQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCP 269 (751)
Q Consensus 190 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (751)
.. .-...|....+|.+++.+. .++++|+ ...+.+|.++..++...++ +
T Consensus 198 k~---------------~~~lRp~~g~wigala~~e---dWlvCGg-Gp~lslwhLrsse~t~vfp-----------i-- 245 (325)
T KOG0649|consen 198 KN---------------PNLLRPDWGKWIGALAVNE---DWLVCGG-GPKLSLWHLRSSESTCVFP-----------I-- 245 (325)
T ss_pred cC---------------hhhcCcccCceeEEEeccC---ceEEecC-CCceeEEeccCCCceEEEe-----------c--
Confidence 00 0111222446788888875 4776654 5678999999876543321 1
Q ss_pred cccccCCccccceEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 004477 270 MHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNH 310 (751)
Q Consensus 270 ~~~~~~g~~~~~vt~v~fspdg~~Ll~~s~d~~I~lwdl~~ 310 (751)
..++..+.|..| .+++++..++|.-|-+..
T Consensus 246 ---------pa~v~~v~F~~d--~vl~~G~g~~v~~~~l~G 275 (325)
T KOG0649|consen 246 ---------PARVHLVDFVDD--CVLIGGEGNHVQSYTLNG 275 (325)
T ss_pred ---------ccceeEeeeecc--eEEEeccccceeeeeecc
Confidence 113666777544 588888888999998776
No 202
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.40 E-value=1e-11 Score=122.82 Aligned_cols=113 Identities=9% Similarity=0.087 Sum_probs=90.4
Q ss_pred EEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEecccCCcceEEEEEecCCCCcEEEEEECCCcEEEEECCCCCCCCCCC
Q 004477 55 AISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDD 134 (751)
Q Consensus 55 ~l~~s~dg~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~Dg~V~vwd~~~~~~~~~~~ 134 (751)
-.+|||+|+++|+++.- .+.|=|.++-+..+.+ ..-..|.-+.|..++ -..|.....|+.|.+|++...
T Consensus 13 ~c~fSp~g~yiAs~~~y-rlviRd~~tlq~~qlf--~cldki~yieW~ads-~~ilC~~yk~~~vqvwsl~Qp------- 81 (447)
T KOG4497|consen 13 FCSFSPCGNYIASLSRY-RLVIRDSETLQLHQLF--LCLDKIVYIEWKADS-CHILCVAYKDPKVQVWSLVQP------- 81 (447)
T ss_pred ceeECCCCCeeeeeeee-EEEEeccchhhHHHHH--HHHHHhhheeeeccc-eeeeeeeeccceEEEEEeecc-------
Confidence 35899999999999876 8888898876655444 224668888999885 455667788999999999965
Q ss_pred CCCCCceeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCC
Q 004477 135 NAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGS 181 (751)
Q Consensus 135 ~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~ 181 (751)
+-...+.+....+.+++|+|++.++|.+...|-.|.+|.+.+.+
T Consensus 82 ---ew~ckIdeg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~ 125 (447)
T KOG4497|consen 82 ---EWYCKIDEGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQK 125 (447)
T ss_pred ---eeEEEeccCCCcceeeeECCCcceEeeeecceeEEEEEEeccce
Confidence 33456677788899999999776888889999999999998865
No 203
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.39 E-value=1.6e-10 Score=124.10 Aligned_cols=270 Identities=8% Similarity=0.083 Sum_probs=162.1
Q ss_pred ccccccchhh-hccccccEEeccCCCcEEEEEECCCCCEEEEEe-CCCcEEEEeCC-CCeE--EEEecccCCcceEEEEE
Q 004477 27 NHSLQMHSSL-VRRLSQERELEGHQGCVNAISWNSKGSLLISGS-DDTHINVWSYS-SRKL--LHSIETGHSANVFCTKF 101 (751)
Q Consensus 27 ~~~l~~~~~~-i~~~~~~~~L~gH~~~V~~l~~s~dg~~LaSgs-~Dg~I~IWd~~-~~~~--~~~l~~~h~~~V~~v~f 101 (751)
++.+.+++.. -.+++.++++. +.+....+.++|++++|++++ .++.|.+|++. +++. +... ...+....+.|
T Consensus 11 ~~~I~~~~~~~~g~l~~~~~~~-~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~--~~~~~p~~i~~ 87 (330)
T PRK11028 11 SQQIHVWNLNHEGALTLLQVVD-VPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAES--PLPGSPTHIST 87 (330)
T ss_pred CCCEEEEEECCCCceeeeeEEe-cCCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeee--cCCCCceEEEE
Confidence 3455555542 13555667665 346678899999999887664 58899999986 3432 2222 23345778999
Q ss_pred ecCCCCcEEEEEE-CCCcEEEEECCCCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCC
Q 004477 102 VPETSDELVVSGA-GDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQG 180 (751)
Q Consensus 102 sp~s~~~~l~sgs-~Dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~ 180 (751)
+|+ +++|++++ .++.|.+|++... +... +.+..+. +...+..++++|++..++++...++.|.+||+.+.
T Consensus 88 ~~~--g~~l~v~~~~~~~v~v~~~~~~-g~~~-----~~~~~~~-~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~ 158 (330)
T PRK11028 88 DHQ--GRFLFSASYNANCVSVSPLDKD-GIPV-----APIQIIE-GLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDD 158 (330)
T ss_pred CCC--CCEEEEEEcCCCeEEEEEECCC-CCCC-----Cceeecc-CCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCC
Confidence 999 77777665 4899999999742 2110 1222222 23346778899955555567777899999999863
Q ss_pred CCCCCCCCCCCccceEEEecccCceecccCCCCCccceEEEEEeCCCCcEEEEEeC-CCeEEEEeCCCCC-CccccCCCC
Q 004477 181 SSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGS-DAFARLYDRRMLP-PLTSCQKRM 258 (751)
Q Consensus 181 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~-D~~IriwD~~~~~-~~~~~~~~~ 258 (751)
..+.... .... .... ......+.|+|+ +++++++.. ++.|.+||+.... .+...+.
T Consensus 159 g~l~~~~-------~~~~----------~~~~--g~~p~~~~~~pd-g~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~-- 216 (330)
T PRK11028 159 GHLVAQE-------PAEV----------TTVE--GAGPRHMVFHPN-QQYAYCVNELNSSVDVWQLKDPHGEIECVQT-- 216 (330)
T ss_pred CcccccC-------CCce----------ecCC--CCCCceEEECCC-CCEEEEEecCCCEEEEEEEeCCCCCEEEEEE--
Confidence 3210000 0000 0000 123457899995 677766654 9999999997321 1110000
Q ss_pred CCCCccccccccccccCCccccceEEEEEcCCCCEEEEEeC-CCcEEEEECCCCCcceeee---ecCCCceeEEeCCCCC
Q 004477 259 SPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYS-GEHVYLMDVNHAGGRAMRY---TVGDASKIMSFTPTLN 334 (751)
Q Consensus 259 ~~~~~~~~~~~~~~~~~g~~~~~vt~v~fspdg~~Ll~~s~-d~~I~lwdl~~~~~~~~~~---~~~~~~~~~~~sp~~~ 334 (751)
+.. .|.... +.. ....+.|+|+|++|+++.. ++.|.+|+++......... ..+..+..+.++|+.+
T Consensus 217 -----~~~-~p~~~~---~~~-~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~~~~~~~~~~~~~~~~p~~~~~~~dg~ 286 (330)
T PRK11028 217 -----LDM-MPADFS---DTR-WAADIHITPDGRHLYACDRTASLISVFSVSEDGSVLSFEGHQPTETQPRGFNIDHSGK 286 (330)
T ss_pred -----Eec-CCCcCC---CCc-cceeEEECCCCCEEEEecCCCCeEEEEEEeCCCCeEEEeEEEeccccCCceEECCCCC
Confidence 000 011100 111 2456899999999999864 7899999997643222222 2234566788888877
Q ss_pred CcccCC
Q 004477 335 GLELQP 340 (751)
Q Consensus 335 ~~~~~~ 340 (751)
.+....
T Consensus 287 ~l~va~ 292 (330)
T PRK11028 287 YLIAAG 292 (330)
T ss_pred EEEEEE
Confidence 666543
No 204
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.35 E-value=1.3e-11 Score=130.79 Aligned_cols=213 Identities=15% Similarity=0.200 Sum_probs=157.6
Q ss_pred EEeccCCCcEEEEEECCCCCEEEEEeC---CCcEEEEeCCCCeEEEEecccCCcceEEEEEecCCCCcEEEEEECCCcEE
Q 004477 44 RELEGHQGCVNAISWNSKGSLLISGSD---DTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVR 120 (751)
Q Consensus 44 ~~L~gH~~~V~~l~~s~dg~~LaSgs~---Dg~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~Dg~V~ 120 (751)
+..-.|...|+.|.|+..|.|||+... ...|.|+++...+...-| .-..+.|.++.|+|.. .+|+.+. -..|+
T Consensus 515 ~~~I~~~k~i~~vtWHrkGDYlatV~~~~~~~~VliHQLSK~~sQ~PF-~kskG~vq~v~FHPs~--p~lfVaT-q~~vR 590 (733)
T KOG0650|consen 515 CIVIKHPKSIRQVTWHRKGDYLATVMPDSGNKSVLIHQLSKRKSQSPF-RKSKGLVQRVKFHPSK--PYLFVAT-QRSVR 590 (733)
T ss_pred EEEEecCCccceeeeecCCceEEEeccCCCcceEEEEecccccccCch-hhcCCceeEEEecCCC--ceEEEEe-ccceE
Confidence 344458999999999999999998765 356889998877766666 4566889999999994 5666554 47899
Q ss_pred EEECCCCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCCCCCCCCCCccceEEEec
Q 004477 121 LFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDL 200 (751)
Q Consensus 121 vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~~~~~~~~~~~~l~~~ 200 (751)
|||+... +.++.+......|..++.+| +|.-|+.|+.|+.+..||+.-....
T Consensus 591 iYdL~kq----------elvKkL~tg~kwiS~msihp-~GDnli~gs~d~k~~WfDldlsskP----------------- 642 (733)
T KOG0650|consen 591 IYDLSKQ----------ELVKKLLTGSKWISSMSIHP-NGDNLILGSYDKKMCWFDLDLSSKP----------------- 642 (733)
T ss_pred EEehhHH----------HHHHHHhcCCeeeeeeeecC-CCCeEEEecCCCeeEEEEcccCcch-----------------
Confidence 9999853 45666766778899999999 5667779999999999999876432
Q ss_pred ccCceecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCccccCCCCCCCC--ccccccccccccCCcc
Q 004477 201 RCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPP--CVNYFCPMHLSEHGRS 278 (751)
Q Consensus 201 ~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~g~~ 278 (751)
......|...+++++|++ .-.++++|+.|+++.||.-.-..-+.. .+. .++.+ ++|... .
T Consensus 643 -------yk~lr~H~~avr~Va~H~-ryPLfas~sdDgtv~Vfhg~VY~Dl~q------npliVPlK~L-~gH~~~---~ 704 (733)
T KOG0650|consen 643 -------YKTLRLHEKAVRSVAFHK-RYPLFASGSDDGTVIVFHGMVYNDLLQ------NPLIVPLKRL-RGHEKT---N 704 (733)
T ss_pred -------hHHhhhhhhhhhhhhhcc-ccceeeeecCCCcEEEEeeeeehhhhc------CCceEeeeec-cCceee---c
Confidence 222233778899999999 478999999999999987543221100 000 01111 122111 1
Q ss_pred ccceEEEEEcCCCCEEEEEeCCCcEEEE
Q 004477 279 SLHLTHVTFSPNGEEVLLSYSGEHVYLM 306 (751)
Q Consensus 279 ~~~vt~v~fspdg~~Ll~~s~d~~I~lw 306 (751)
...|..+.|+|...+|++++.||+|+||
T Consensus 705 ~~gVLd~~wHP~qpWLfsAGAd~tirlf 732 (733)
T KOG0650|consen 705 DLGVLDTIWHPRQPWLFSAGADGTIRLF 732 (733)
T ss_pred ccceEeecccCCCceEEecCCCceEEee
Confidence 2358899999999999999999999998
No 205
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.35 E-value=8.4e-12 Score=130.51 Aligned_cols=206 Identities=14% Similarity=0.186 Sum_probs=147.5
Q ss_pred CEEEEEeCCCcEEEEeCCCCeEEEEecccCCcceEEEEEecCCCCcEEEEEECCCcEEEEECCCCCCCCCCCCCCCCcee
Q 004477 63 SLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSAL 142 (751)
Q Consensus 63 ~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~Dg~V~vwd~~~~~~~~~~~~~~~~~~~ 142 (751)
..|+.++.||.+.|.+ +.++....+ ..|.+.|.|-.|+|+ |.-|+|++.||.|++|.-.. ....+
T Consensus 76 d~~~i~s~DGkf~il~-k~~rVE~sv-~AH~~A~~~gRW~~d--GtgLlt~GEDG~iKiWSrsG-----------MLRSt 140 (737)
T KOG1524|consen 76 DTLLICSNDGRFVILN-KSARVERSI-SAHAAAISSGRWSPD--GAGLLTAGEDGVIKIWSRSG-----------MLRST 140 (737)
T ss_pred ceEEEEcCCceEEEec-ccchhhhhh-hhhhhhhhhcccCCC--CceeeeecCCceEEEEeccc-----------hHHHH
Confidence 4788999999999988 456666667 799999999999999 89999999999999998763 33445
Q ss_pred ecccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCCCCCCCCCCccceEEEecccCceecccCCCCCccceEEEE
Q 004477 143 YQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCD 222 (751)
Q Consensus 143 ~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~i~ 222 (751)
+.....+|+|++|.|+...++.+.+. .+.|=-+..... .+-| ..|.+-|-+++
T Consensus 141 l~Q~~~~v~c~~W~p~S~~vl~c~g~--h~~IKpL~~n~k------------~i~W-------------kAHDGiiL~~~ 193 (737)
T KOG1524|consen 141 VVQNEESIRCARWAPNSNSIVFCQGG--HISIKPLAANSK------------IIRW-------------RAHDGLVLSLS 193 (737)
T ss_pred HhhcCceeEEEEECCCCCceEEecCC--eEEEeecccccc------------eeEE-------------eccCcEEEEee
Confidence 55677899999999976666655543 444433322211 1112 23677899999
Q ss_pred EeCCCCcEEEEEeCCCeEEEEeCCCCCCccccCCCCCCCCccccccccccccCCccccceEEEEEcCCCCEEEEEeCCCc
Q 004477 223 ISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEH 302 (751)
Q Consensus 223 ~sp~~~~~l~sgs~D~~IriwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~vt~v~fspdg~~Ll~~s~d~~ 302 (751)
|+|. .+++++|+.|-..+|||..-..... .....++||+++|.|+ +.+++++. ++
T Consensus 194 W~~~-s~lI~sgGED~kfKvWD~~G~~Lf~----------------------S~~~ey~ITSva~npd-~~~~v~S~-nt 248 (737)
T KOG1524|consen 194 WSTQ-SNIIASGGEDFRFKIWDAQGANLFT----------------------SAAEEYAITSVAFNPE-KDYLLWSY-NT 248 (737)
T ss_pred cCcc-ccceeecCCceeEEeecccCccccc----------------------CChhccceeeeeeccc-cceeeeee-ee
Confidence 9996 7999999999999999976322111 1123457999999999 54555543 34
Q ss_pred EEEEECCCCCcceeeeecCCCceeEEeCCCCCCcccCCCccccc
Q 004477 303 VYLMDVNHAGGRAMRYTVGDASKIMSFTPTLNGLELQPPIHDFL 346 (751)
Q Consensus 303 I~lwdl~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~~~~~~~ 346 (751)
+++=..+ .+.+-.++|+|++..++.....+...
T Consensus 249 ~R~~~p~-----------~GSifnlsWS~DGTQ~a~gt~~G~v~ 281 (737)
T KOG1524|consen 249 ARFSSPR-----------VGSIFNLSWSADGTQATCGTSTGQLI 281 (737)
T ss_pred eeecCCC-----------ccceEEEEEcCCCceeeccccCceEE
Confidence 4432222 23566788999998888777666544
No 206
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.33 E-value=2.1e-11 Score=125.12 Aligned_cols=188 Identities=15% Similarity=0.147 Sum_probs=130.2
Q ss_pred EEEEEecCCCCcEEEEEECCCcEEEEECCCCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEe
Q 004477 97 FCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHD 176 (751)
Q Consensus 97 ~~v~fsp~s~~~~l~sgs~Dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwD 176 (751)
-+++|+++ |..|++|+.||++|||+.... .++.....|...|.++.|+| ++.+|++-+.| ..++|+
T Consensus 148 k~vaf~~~--gs~latgg~dg~lRv~~~Ps~----------~t~l~e~~~~~eV~DL~FS~-dgk~lasig~d-~~~VW~ 213 (398)
T KOG0771|consen 148 KVVAFNGD--GSKLATGGTDGTLRVWEWPSM----------LTILEEIAHHAEVKDLDFSP-DGKFLASIGAD-SARVWS 213 (398)
T ss_pred eEEEEcCC--CCEeeeccccceEEEEecCcc----------hhhhhhHhhcCccccceeCC-CCcEEEEecCC-ceEEEE
Confidence 57899998 899999999999999996643 44667788999999999999 77999999999 999999
Q ss_pred cCCCCCCCCCCCCCCccceEEEecccCceecccCCCCCccceEEEEEeCCC---C-cEEEEEeCCCeEEEEeCCCCCCcc
Q 004477 177 FRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTR---P-HLLLVGGSDAFARLYDRRMLPPLT 252 (751)
Q Consensus 177 lr~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~---~-~~l~sgs~D~~IriwD~~~~~~~~ 252 (751)
++++....... +.........|.|+.++ . ++++.-..-+.|+.||+...+.-.
T Consensus 214 ~~~g~~~a~~t-----------------------~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~ 270 (398)
T KOG0771|consen 214 VNTGAALARKT-----------------------PFSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSN 270 (398)
T ss_pred eccCchhhhcC-----------------------CcccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeecccc
Confidence 99985432111 01122344556666632 1 233333445677777765433211
Q ss_pred ccCCCCCCCCccccccccccccCCccccceEEEEEcCCCCEEEEEeCCCcEEEEECCCCCccee-eeecCCCceeEEeCC
Q 004477 253 SCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAM-RYTVGDASKIMSFTP 331 (751)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~vt~v~fspdg~~Ll~~s~d~~I~lwdl~~~~~~~~-~~~~~~~~~~~~~sp 331 (751)
.+ + .......+. .|++++.|+||++++.|+.||.|-|++..+.+.... ...|...+..+.|+|
T Consensus 271 ~l----------~----~~~~~~~~~--siSsl~VS~dGkf~AlGT~dGsVai~~~~~lq~~~~vk~aH~~~VT~ltF~P 334 (398)
T KOG0771|consen 271 FL----------R----LRKKIKRFK--SISSLAVSDDGKFLALGTMDGSVAIYDAKSLQRLQYVKEAHLGFVTGLTFSP 334 (398)
T ss_pred cc----------c----hhhhhhccC--cceeEEEcCCCcEEEEeccCCcEEEEEeceeeeeEeehhhheeeeeeEEEcC
Confidence 10 0 000111222 499999999999999999999999999988542222 223456788899999
Q ss_pred CCCCcc
Q 004477 332 TLNGLE 337 (751)
Q Consensus 332 ~~~~~~ 337 (751)
+.+...
T Consensus 335 dsr~~~ 340 (398)
T KOG0771|consen 335 DSRYLA 340 (398)
T ss_pred CcCccc
Confidence 876554
No 207
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.33 E-value=3.8e-10 Score=125.29 Aligned_cols=221 Identities=11% Similarity=0.080 Sum_probs=135.4
Q ss_pred EEeccCCCcEEEEEECCCCCEEEEEe---CCCcEEEEeCCCCeEEEEecccCCcceEEEEEecCCCCcEEEE-EECCC--
Q 004477 44 RELEGHQGCVNAISWNSKGSLLISGS---DDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVS-GAGDA-- 117 (751)
Q Consensus 44 ~~L~gH~~~V~~l~~s~dg~~LaSgs---~Dg~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~s~~~~l~s-gs~Dg-- 117 (751)
+.+..+.+.+...+|+|||+.||..+ .+..|.+|++.+++... + ....+.+..++|+|+ |+.|+. .+.++
T Consensus 192 ~~lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~-l-~~~~~~~~~~~~SPD--G~~La~~~~~~g~~ 267 (429)
T PRK03629 192 FVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQ-V-ASFPRHNGAPAFSPD--GSKLAFALSKTGSL 267 (429)
T ss_pred EEeecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEE-c-cCCCCCcCCeEECCC--CCEEEEEEcCCCCc
Confidence 44555677899999999999998764 34579999998775432 2 223344567899999 776664 44455
Q ss_pred cEEEEECCCCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeC-CCcEEEE--ecCCCCCCCCCCCCCCccc
Q 004477 118 EVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASE-DGTLRQH--DFRQGSSCPPAGSSHQECR 194 (751)
Q Consensus 118 ~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~-Dg~I~iw--Dlr~~~~~~~~~~~~~~~~ 194 (751)
.|.+||+..+. ...+..+...+....|+| +++.|+..+. +|...+| |+.++...
T Consensus 268 ~I~~~d~~tg~-----------~~~lt~~~~~~~~~~wSP-DG~~I~f~s~~~g~~~Iy~~d~~~g~~~----------- 324 (429)
T PRK03629 268 NLYVMDLASGQ-----------IRQVTDGRSNNTEPTWFP-DSQNLAYTSDQAGRPQVYKVNINGGAPQ----------- 324 (429)
T ss_pred EEEEEECCCCC-----------EEEccCCCCCcCceEECC-CCCEEEEEeCCCCCceEEEEECCCCCeE-----------
Confidence 48888987532 233444455678899999 5565555554 4555555 44443210
Q ss_pred eEEEecccCceecccCCCCCccceEEEEEeCCCCcEEEEEeCC---CeEEEEeCCCCCCccccCCCCCCCCccccccccc
Q 004477 195 NILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSD---AFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMH 271 (751)
Q Consensus 195 ~~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D---~~IriwD~~~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (751)
. +.. .........|+|+ +++|+..+.+ ..|.+||+.++... . +..
T Consensus 325 -~-----------lt~---~~~~~~~~~~SpD-G~~Ia~~~~~~g~~~I~~~dl~~g~~~-~-------------Lt~-- 372 (429)
T PRK03629 325 -R-----------ITW---EGSQNQDADVSSD-GKFMVMVSSNGGQQHIAKQDLATGGVQ-V-------------LTD-- 372 (429)
T ss_pred -E-----------eec---CCCCccCEEECCC-CCEEEEEEccCCCceEEEEECCCCCeE-E-------------eCC--
Confidence 0 100 1122446789995 6776665543 35888898765321 0 000
Q ss_pred cccCCccccceEEEEEcCCCCEEEEEeCCC---cEEEEECCCCCcceeeeecCCCceeEEeCC
Q 004477 272 LSEHGRSSLHLTHVTFSPNGEEVLLSYSGE---HVYLMDVNHAGGRAMRYTVGDASKIMSFTP 331 (751)
Q Consensus 272 ~~~~g~~~~~vt~v~fspdg~~Ll~~s~d~---~I~lwdl~~~~~~~~~~~~~~~~~~~~~sp 331 (751)
.. ......|+|||++|+.++.++ .+++++++... ......+.......+|+|
T Consensus 373 ----~~---~~~~p~~SpDG~~i~~~s~~~~~~~l~~~~~~G~~-~~~l~~~~~~~~~p~Wsp 427 (429)
T PRK03629 373 ----TF---LDETPSIAPNGTMVIYSSSQGMGSVLNLVSTDGRF-KARLPATDGQVKFPAWSP 427 (429)
T ss_pred ----CC---CCCCceECCCCCEEEEEEcCCCceEEEEEECCCCC-eEECccCCCCcCCcccCC
Confidence 00 123567999999999988765 37888886533 333333344455566665
No 208
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.31 E-value=2.1e-10 Score=127.80 Aligned_cols=204 Identities=13% Similarity=0.104 Sum_probs=131.1
Q ss_pred ccEEeccCCCcEEEEEECCCCCEEEEEeCC---CcEEEEeCCCCeEEEEecccCCcceEEEEEecCCCCcEE-EEEECCC
Q 004477 42 QERELEGHQGCVNAISWNSKGSLLISGSDD---THINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELV-VSGAGDA 117 (751)
Q Consensus 42 ~~~~L~gH~~~V~~l~~s~dg~~LaSgs~D---g~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~s~~~~l-~sgs~Dg 117 (751)
..+.|..|...|...+|+|||+.|+..+.+ ..|.+||+.+++... + ..+.+...+.+|+|+ |+.| ++.+.++
T Consensus 195 ~~~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~-l-~~~~g~~~~~~~SpD--G~~l~~~~s~~g 270 (433)
T PRK04922 195 NPQTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQREL-V-ASFRGINGAPSFSPD--GRRLALTLSRDG 270 (433)
T ss_pred CceEeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEE-e-ccCCCCccCceECCC--CCEEEEEEeCCC
Confidence 345667788889999999999999988743 469999998776533 3 344555668899999 6655 4666666
Q ss_pred --cEEEEECCCCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEe-CCCc--EEEEecCCCCCCCCCCCCCCc
Q 004477 118 --EVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSAS-EDGT--LRQHDFRQGSSCPPAGSSHQE 192 (751)
Q Consensus 118 --~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s-~Dg~--I~iwDlr~~~~~~~~~~~~~~ 192 (751)
.|++||+..+. ...+..+.......+|+|+ ++.|+.++ .+|. |.++|+.+++..
T Consensus 271 ~~~Iy~~d~~~g~-----------~~~lt~~~~~~~~~~~spD-G~~l~f~sd~~g~~~iy~~dl~~g~~~--------- 329 (433)
T PRK04922 271 NPEIYVMDLGSRQ-----------LTRLTNHFGIDTEPTWAPD-GKSIYFTSDRGGRPQIYRVAASGGSAE--------- 329 (433)
T ss_pred CceEEEEECCCCC-----------eEECccCCCCccceEECCC-CCEEEEEECCCCCceEEEEECCCCCeE---------
Confidence 58899987532 3344455555678899994 56555544 4555 555565544310
Q ss_pred cceEEEecccCceecccCCCCCccceEEEEEeCCCCcEEEEEeCCC---eEEEEeCCCCCCccccCCCCCCCCccccccc
Q 004477 193 CRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDA---FARLYDRRMLPPLTSCQKRMSPPPCVNYFCP 269 (751)
Q Consensus 193 ~~~~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~---~IriwD~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (751)
.+.. ........+|+|+ +++|+..+.++ .|.+||+.+.+.. . +.
T Consensus 330 --------------~lt~---~g~~~~~~~~SpD-G~~Ia~~~~~~~~~~I~v~d~~~g~~~-~-------------Lt- 376 (433)
T PRK04922 330 --------------RLTF---QGNYNARASVSPD-GKKIAMVHGSGGQYRIAVMDLSTGSVR-T-------------LT- 376 (433)
T ss_pred --------------Eeec---CCCCccCEEECCC-CCEEEEEECCCCceeEEEEECCCCCeE-E-------------CC-
Confidence 0110 1112345799995 67776654432 6999998765421 1 00
Q ss_pred cccccCCccccceEEEEEcCCCCEEEEEeC---CCcEEEEECCCC
Q 004477 270 MHLSEHGRSSLHLTHVTFSPNGEEVLLSYS---GEHVYLMDVNHA 311 (751)
Q Consensus 270 ~~~~~~g~~~~~vt~v~fspdg~~Ll~~s~---d~~I~lwdl~~~ 311 (751)
.+. ......|+|||++|+..+. ...|+++++...
T Consensus 377 -----~~~---~~~~p~~spdG~~i~~~s~~~g~~~L~~~~~~g~ 413 (433)
T PRK04922 377 -----PGS---LDESPSFAPNGSMVLYATREGGRGVLAAVSTDGR 413 (433)
T ss_pred -----CCC---CCCCceECCCCCEEEEEEecCCceEEEEEECCCC
Confidence 011 1345689999999887765 346888888653
No 209
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.31 E-value=2.5e-10 Score=114.69 Aligned_cols=228 Identities=16% Similarity=0.224 Sum_probs=144.6
Q ss_pred eccCCCcEEEEEECCCCCEEEEEe-CCCcEEEEeCCCCeEEEEecccCCcceEEEEEecCCCCcEEEEEECCCcEEEEEC
Q 004477 46 LEGHQGCVNAISWNSKGSLLISGS-DDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNL 124 (751)
Q Consensus 46 L~gH~~~V~~l~~s~dg~~LaSgs-~Dg~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~Dg~V~vwd~ 124 (751)
..|| ..|+.|+|++||..|++++ .|..|+|||+.++..+.-. .--.+.+.-++|+|+ +.+|+.+.-|+..+||+.
T Consensus 192 ~pgh-~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~-~~glgg~slLkwSPd--gd~lfaAt~davfrlw~e 267 (445)
T KOG2139|consen 192 DPGH-NPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLI-PKGLGGFSLLKWSPD--GDVLFAATCDAVFRLWQE 267 (445)
T ss_pred CCCC-ceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCccccc-ccCCCceeeEEEcCC--CCEEEEecccceeeeehh
Confidence 3566 6899999999999999998 5778999999998876655 334577999999999 899999999999999976
Q ss_pred CCCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCCCCCC-CCCCccceEEEecccC
Q 004477 125 SRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAG-SSHQECRNILLDLRCG 203 (751)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~~~-~~~~~~~~~l~~~~~~ 203 (751)
... ........-.++|...+|+|.+..+|.+++..-. +|.+.-...+.... .........+.++..-
T Consensus 268 ~q~----------wt~erw~lgsgrvqtacWspcGsfLLf~~sgsp~--lysl~f~~~~~~~~~~~~~k~~lliaDL~e~ 335 (445)
T KOG2139|consen 268 NQS----------WTKERWILGSGRVQTACWSPCGSFLLFACSGSPR--LYSLTFDGEDSVFLRPQSIKRVLLIADLQEV 335 (445)
T ss_pred ccc----------ceecceeccCCceeeeeecCCCCEEEEEEcCCce--EEEEeecCCCccccCcccceeeeeeccchhh
Confidence 532 1112223345699999999977777777765554 44444333222111 1111111222222210
Q ss_pred ceecccCCCCCccceEEEEEeCCCCcEEEEEeCCC--------eEEEEeCCCCCCccccCCCCCCCCccccccccccccC
Q 004477 204 AKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDA--------FARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEH 275 (751)
Q Consensus 204 ~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~--------~IriwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (751)
. .......-..++.+++|.|. +.+|++.-..+ .|-+||.+...++... ++....
T Consensus 336 t--i~ag~~l~cgeaq~lawDps-GeyLav~fKg~~~v~~~k~~i~~fdtr~sp~vels------------~cg~i~--- 397 (445)
T KOG2139|consen 336 T--ICAGQRLCCGEAQCLAWDPS-GEYLAVIFKGQSFVLLCKLHISRFDTRKSPPVELS------------YCGMIG--- 397 (445)
T ss_pred h--hhcCcccccCccceeeECCC-CCEEEEEEcCCchhhhhhhhhhhhcccccCceEEE------------eccccc---
Confidence 0 00001112457889999995 78888875543 4677887765433211 111110
Q ss_pred CccccceEEEEEcC---CCCEEEEEeCCCcEEEEECCC
Q 004477 276 GRSSLHLTHVTFSP---NGEEVLLSYSGEHVYLMDVNH 310 (751)
Q Consensus 276 g~~~~~vt~v~fsp---dg~~Ll~~s~d~~I~lwdl~~ 310 (751)
+. +...++|+| +|..|.++-+-|.|.-|++.-
T Consensus 398 ge---~P~~IsF~pl~n~g~lLsiaWsTGriq~ypl~f 432 (445)
T KOG2139|consen 398 GE---YPAYISFGPLKNEGRLLSIAWSTGRIQRYPLTF 432 (445)
T ss_pred CC---CCceEEeeecccCCcEEEEEeccCceEeeeeEE
Confidence 11 134566666 677888888889888887654
No 210
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.30 E-value=3.8e-10 Score=125.87 Aligned_cols=205 Identities=11% Similarity=0.065 Sum_probs=133.8
Q ss_pred ccEEeccCCCcEEEEEECCCCCEEEEEeC---CCcEEEEeCCCCeEEEEecccCCcceEEEEEecCCCCcEE-EEEECCC
Q 004477 42 QERELEGHQGCVNAISWNSKGSLLISGSD---DTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELV-VSGAGDA 117 (751)
Q Consensus 42 ~~~~L~gH~~~V~~l~~s~dg~~LaSgs~---Dg~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~s~~~~l-~sgs~Dg 117 (751)
..+.|..|.+.|.+.+|+|||+.|+..+. +..|.+||+.++... .+ ..+.+.+...+|+|+ |+.| ++.+.++
T Consensus 193 ~~~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~-~l-~~~~g~~~~~~~SPD--G~~la~~~~~~g 268 (435)
T PRK05137 193 NVRYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRE-LV-GNFPGMTFAPRFSPD--GRKVVMSLSQGG 268 (435)
T ss_pred CcEEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEE-Ee-ecCCCcccCcEECCC--CCEEEEEEecCC
Confidence 34567788899999999999999998764 468999999887653 34 456777889999999 6655 4666666
Q ss_pred c--EEEEECCCCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEe-CCC--cEEEEecCCCCCCCCCCCCCCc
Q 004477 118 E--VRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSAS-EDG--TLRQHDFRQGSSCPPAGSSHQE 192 (751)
Q Consensus 118 ~--V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s-~Dg--~I~iwDlr~~~~~~~~~~~~~~ 192 (751)
. |.+||+..+ ....+..+........|+|+ ++.|+..+ .+| .|.++|+..+...
T Consensus 269 ~~~Iy~~d~~~~-----------~~~~Lt~~~~~~~~~~~spD-G~~i~f~s~~~g~~~Iy~~d~~g~~~~--------- 327 (435)
T PRK05137 269 NTDIYTMDLRSG-----------TTTRLTDSPAIDTSPSYSPD-GSQIVFESDRSGSPQLYVMNADGSNPR--------- 327 (435)
T ss_pred CceEEEEECCCC-----------ceEEccCCCCccCceeEcCC-CCEEEEEECCCCCCeEEEEECCCCCeE---------
Confidence 5 666677653 13445556666778999994 56555554 444 5667776554311
Q ss_pred cceEEEecccCceecccCCCCCccceEEEEEeCCCCcEEEEEeCC---CeEEEEeCCCCCCccccCCCCCCCCccccccc
Q 004477 193 CRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSD---AFARLYDRRMLPPLTSCQKRMSPPPCVNYFCP 269 (751)
Q Consensus 193 ~~~~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D---~~IriwD~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (751)
.+.. ....+....|+|+ +++|+....+ ..|.+||+..... . .+.
T Consensus 328 --------------~lt~---~~~~~~~~~~Spd-G~~ia~~~~~~~~~~i~~~d~~~~~~-~-------------~lt- 374 (435)
T PRK05137 328 --------------RISF---GGGRYSTPVWSPR-GDLIAFTKQGGGQFSIGVMKPDGSGE-R-------------ILT- 374 (435)
T ss_pred --------------Eeec---CCCcccCeEECCC-CCEEEEEEcCCCceEEEEEECCCCce-E-------------ecc-
Confidence 0111 1123456789995 6777665543 3677888753321 1 010
Q ss_pred cccccCCccccceEEEEEcCCCCEEEEEeCC------CcEEEEECCCCC
Q 004477 270 MHLSEHGRSSLHLTHVTFSPNGEEVLLSYSG------EHVYLMDVNHAG 312 (751)
Q Consensus 270 ~~~~~~g~~~~~vt~v~fspdg~~Ll~~s~d------~~I~lwdl~~~~ 312 (751)
.+. .+..+.|+|||+.|+..+.+ ..++++|+..+.
T Consensus 375 -----~~~---~~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl~g~~ 415 (435)
T PRK05137 375 -----SGF---LVEGPTWAPNGRVIMFFRQTPGSGGAPKLYTVDLTGRN 415 (435)
T ss_pred -----CCC---CCCCCeECCCCCEEEEEEccCCCCCcceEEEEECCCCc
Confidence 011 25568899999998776542 368888987754
No 211
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.29 E-value=3.8e-10 Score=125.36 Aligned_cols=227 Identities=10% Similarity=0.062 Sum_probs=139.4
Q ss_pred cEEeccCCCcEEEEEECCCCCEEEEEeCC---CcEEEEeCCCCeEEEEecccCCcceEEEEEecCCCCcEEE-EEECCCc
Q 004477 43 ERELEGHQGCVNAISWNSKGSLLISGSDD---THINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVV-SGAGDAE 118 (751)
Q Consensus 43 ~~~L~gH~~~V~~l~~s~dg~~LaSgs~D---g~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~s~~~~l~-sgs~Dg~ 118 (751)
.+.+..+.+.|.+.+|+|||+.||..+.+ ..|.+||+.+++... + ....+.+.+.+|+|+ |+.|+ +.+.++.
T Consensus 188 ~~~l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~-l-~~~~g~~~~~~~SPD--G~~la~~~~~~g~ 263 (427)
T PRK02889 188 AQSALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRV-V-ANFKGSNSAPAWSPD--GRTLAVALSRDGN 263 (427)
T ss_pred ceEeccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEE-e-ecCCCCccceEECCC--CCEEEEEEccCCC
Confidence 34566788899999999999999987743 359999998886543 3 334456778999999 66665 6788888
Q ss_pred EEEEECCCCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEE-EEeCCCcEEEEecCCCCCCCCCCCCCCccceEE
Q 004477 119 VRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVW-SASEDGTLRQHDFRQGSSCPPAGSSHQECRNIL 197 (751)
Q Consensus 119 V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~-s~s~Dg~I~iwDlr~~~~~~~~~~~~~~~~~~l 197 (751)
..||.+.... .....+..+...+....|+|+ ++.|+ ++..+|...+|.+...... ...
T Consensus 264 ~~Iy~~d~~~---------~~~~~lt~~~~~~~~~~wSpD-G~~l~f~s~~~g~~~Iy~~~~~~g~----------~~~- 322 (427)
T PRK02889 264 SQIYTVNADG---------SGLRRLTQSSGIDTEPFFSPD-GRSIYFTSDRGGAPQIYRMPASGGA----------AQR- 322 (427)
T ss_pred ceEEEEECCC---------CCcEECCCCCCCCcCeEEcCC-CCEEEEEecCCCCcEEEEEECCCCc----------eEE-
Confidence 7777765322 123445555566677899995 45544 4444567777765422100 000
Q ss_pred EecccCceecccCCCCCccceEEEEEeCCCCcEEEEEeCCC---eEEEEeCCCCCCccccCCCCCCCCcccccccccccc
Q 004477 198 LDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDA---FARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSE 274 (751)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~---~IriwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (751)
+... .......+|+|+ +++|+..+.++ .|.+||+...+... ..
T Consensus 323 ----------lt~~---g~~~~~~~~SpD-G~~Ia~~s~~~g~~~I~v~d~~~g~~~~--------------lt------ 368 (427)
T PRK02889 323 ----------VTFT---GSYNTSPRISPD-GKLLAYISRVGGAFKLYVQDLATGQVTA--------------LT------ 368 (427)
T ss_pred ----------EecC---CCCcCceEECCC-CCEEEEEEccCCcEEEEEEECCCCCeEE--------------cc------
Confidence 1000 112235689995 67777666554 69999987654211 00
Q ss_pred CCccccceEEEEEcCCCCEEEEEeCCC---cEEEEECCCCCcceeeeecCCCceeEEeCCC
Q 004477 275 HGRSSLHLTHVTFSPNGEEVLLSYSGE---HVYLMDVNHAGGRAMRYTVGDASKIMSFTPT 332 (751)
Q Consensus 275 ~g~~~~~vt~v~fspdg~~Ll~~s~d~---~I~lwdl~~~~~~~~~~~~~~~~~~~~~sp~ 332 (751)
.+. ......|+|||++|+..+.++ .+++.++.. ................+|+|.
T Consensus 369 ~~~---~~~~p~~spdg~~l~~~~~~~g~~~l~~~~~~g-~~~~~l~~~~g~~~~p~wsp~ 425 (427)
T PRK02889 369 DTT---RDESPSFAPNGRYILYATQQGGRSVLAAVSSDG-RIKQRLSVQGGDVREPSWGPF 425 (427)
T ss_pred CCC---CccCceECCCCCEEEEEEecCCCEEEEEEECCC-CceEEeecCCCCCCCCccCCC
Confidence 000 134678999999998877643 466777744 322222223344455566653
No 212
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.26 E-value=2.4e-10 Score=116.15 Aligned_cols=227 Identities=11% Similarity=0.142 Sum_probs=156.9
Q ss_pred EeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCe----EEEEecccCCcceEEEEEecCCCCcEEEEEECC--Cc
Q 004477 45 ELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRK----LLHSIETGHSANVFCTKFVPETSDELVVSGAGD--AE 118 (751)
Q Consensus 45 ~L~gH~~~V~~l~~s~dg~~LaSgs~Dg~I~IWd~~~~~----~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~D--g~ 118 (751)
+..+-++.|-.++.. || .|++|-.+|.+.+|..+.+. .+..+ .-...+..+.-+|.. ..++++|+.. ..
T Consensus 100 ~~~l~~~~I~gl~~~-dg-~Litc~~sG~l~~~~~k~~d~hss~l~~l--a~g~g~~~~r~~~~~-p~Iva~GGke~~n~ 174 (412)
T KOG3881|consen 100 TVSLGTKSIKGLKLA-DG-TLITCVSSGNLQVRHDKSGDLHSSKLIKL--ATGPGLYDVRQTDTD-PYIVATGGKENINE 174 (412)
T ss_pred ccccccccccchhhc-CC-EEEEEecCCcEEEEeccCCccccccceee--ecCCceeeeccCCCC-CceEecCchhcccc
Confidence 344445555555543 33 67888899999999988432 23333 223567788888774 5677789998 88
Q ss_pred EEEEECCCCCCCCCCCCCCCCceeeccc-----------CCceeEEEEecCC-CCEEEEEeCCCcEEEEecCCCCCCCCC
Q 004477 119 VRLFNLSRFSGRGLDDNAITPSALYQCH-----------TRRVKKLAVEVGN-PHVVWSASEDGTLRQHDFRQGSSCPPA 186 (751)
Q Consensus 119 V~vwd~~~~~~~~~~~~~~~~~~~~~~h-----------~~~V~~l~~sp~~-~~~l~s~s~Dg~I~iwDlr~~~~~~~~ 186 (751)
++|||+... .+.+.+- .-.++++.|-+.. ...|++++.-+.+|+||++.+..+
T Consensus 175 lkiwdle~~------------~qiw~aKNvpnD~L~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRP--- 239 (412)
T KOG3881|consen 175 LKIWDLEQS------------KQIWSAKNVPNDRLGLRVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRP--- 239 (412)
T ss_pred eeeeecccc------------eeeeeccCCCCccccceeeeeeccceecCCCCCceEEEEecceeEEEecCcccCcc---
Confidence 999999964 2222221 2346788888721 678999999999999999976643
Q ss_pred CCCCCccceEEEecccCceecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCccccCCCCCCCCcccc
Q 004477 187 GSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNY 266 (751)
Q Consensus 187 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~~~~~~~~~~~~~~~~ 266 (751)
+..++-....++++...| +++.|++|..-+.+..||+|.++.....
T Consensus 240 ---------------------V~~fd~~E~~is~~~l~p-~gn~Iy~gn~~g~l~~FD~r~~kl~g~~------------ 285 (412)
T KOG3881|consen 240 ---------------------VAQFDFLENPISSTGLTP-SGNFIYTGNTKGQLAKFDLRGGKLLGCG------------ 285 (412)
T ss_pred ---------------------eeEeccccCcceeeeecC-CCcEEEEecccchhheecccCceeeccc------------
Confidence 122222456899999999 5899999999999999999987643210
Q ss_pred ccccccccCCccccceEEEEEcCCCCEEEEEeCCCcEEEEECCCCCcceeeeecCCCceeEEeCCCCC
Q 004477 267 FCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVGDASKIMSFTPTLN 334 (751)
Q Consensus 267 ~~~~~~~~~g~~~~~vt~v~fspdg~~Ll~~s~d~~I~lwdl~~~~~~~~~~~~~~~~~~~~~sp~~~ 334 (751)
+ .|- .+.|++|..+|.+++|++++-|..|+|+|+.+.+.....|. ....+.+-+.+..+
T Consensus 286 ~-------kg~-tGsirsih~hp~~~~las~GLDRyvRIhD~ktrkll~kvYv-Ks~lt~il~~~~~n 344 (412)
T KOG3881|consen 286 L-------KGI-TGSIRSIHCHPTHPVLASCGLDRYVRIHDIKTRKLLHKVYV-KSRLTFILLRDDVN 344 (412)
T ss_pred c-------CCc-cCCcceEEEcCCCceEEeeccceeEEEeecccchhhhhhhh-hccccEEEecCCcc
Confidence 0 122 23699999999999999999999999999999544333333 33334444444433
No 213
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.25 E-value=3.6e-10 Score=113.51 Aligned_cols=207 Identities=18% Similarity=0.224 Sum_probs=142.6
Q ss_pred CCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEecccCCcceEEEEEecCCCCcEEEEEECCCcEEEEECCCCCC
Q 004477 50 QGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSG 129 (751)
Q Consensus 50 ~~~V~~l~~s~dg~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~Dg~V~vwd~~~~~~ 129 (751)
+-++..++|++.-..+|++..|-.|+|||-.. +....++..-..+|.|++|-|.+ +.-|+.|+. +-|++|.......
T Consensus 98 ~~dlr~~aWhqH~~~fava~nddvVriy~kss-t~pt~Lks~sQrnvtclawRPls-aselavgCr-~gIciW~~s~tln 174 (445)
T KOG2139|consen 98 EIDLRGVAWHQHIIAFAVATNDDVVRIYDKSS-TCPTKLKSVSQRNVTCLAWRPLS-ASELAVGCR-AGICIWSDSRTLN 174 (445)
T ss_pred hcceeeEeechhhhhhhhhccCcEEEEeccCC-CCCceecchhhcceeEEEeccCC-cceeeeeec-ceeEEEEcCcccc
Confidence 35788899999888899999999999999765 55556645567899999999997 677777776 4589998875211
Q ss_pred --CCCCCCCCCC--ceeecccCCceeEEEEecCCCCEEEEEeC-CCcEEEEecCCCCCCCCCCCCCCccceEEEecccCc
Q 004477 130 --RGLDDNAITP--SALYQCHTRRVKKLAVEVGNPHVVWSASE-DGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGA 204 (751)
Q Consensus 130 --~~~~~~~~~~--~~~~~~h~~~V~~l~~sp~~~~~l~s~s~-Dg~I~iwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~ 204 (751)
+........+ +....+| .+|+++.|.+ ++..+++++. |..|+|||..++...+.
T Consensus 175 ~~r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~-dgt~l~tAS~gsssi~iWdpdtg~~~pL------------------- 233 (445)
T KOG2139|consen 175 ANRNIRMMSTHHLQVLQDPGH-NPVTSMQWNE-DGTILVTASFGSSSIMIWDPDTGQKIPL------------------- 233 (445)
T ss_pred cccccccccccchhheeCCCC-ceeeEEEEcC-CCCEEeecccCcceEEEEcCCCCCcccc-------------------
Confidence 1100011112 2223445 7899999999 5677778774 67899999999874321
Q ss_pred eecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCC-CCCCccccCCCCCCCCccccccccccccCCccccceE
Q 004477 205 KRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRR-MLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLT 283 (751)
Q Consensus 205 ~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~vt 283 (751)
.+.....+.-+.|+| ++.+|.++.-|+..++|... +-... + ..+ ..+.|.
T Consensus 234 ------~~~glgg~slLkwSP-dgd~lfaAt~davfrlw~e~q~wt~e-------------r----w~l-----gsgrvq 284 (445)
T KOG2139|consen 234 ------IPKGLGGFSLLKWSP-DGDVLFAATCDAVFRLWQENQSWTKE-------------R----WIL-----GSGRVQ 284 (445)
T ss_pred ------cccCCCceeeEEEcC-CCCEEEEecccceeeeehhcccceec-------------c----eec-----cCCcee
Confidence 122345678899999 48999999999999999543 22110 0 000 112589
Q ss_pred EEEEcCCCCEEEEEeCCCcEEEEECCC
Q 004477 284 HVTFSPNGEEVLLSYSGEHVYLMDVNH 310 (751)
Q Consensus 284 ~v~fspdg~~Ll~~s~d~~I~lwdl~~ 310 (751)
...|+|+|++|+..... .-+||.+.-
T Consensus 285 tacWspcGsfLLf~~sg-sp~lysl~f 310 (445)
T KOG2139|consen 285 TACWSPCGSFLLFACSG-SPRLYSLTF 310 (445)
T ss_pred eeeecCCCCEEEEEEcC-CceEEEEee
Confidence 99999999988766543 233444433
No 214
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.24 E-value=1.3e-10 Score=122.15 Aligned_cols=180 Identities=18% Similarity=0.261 Sum_probs=124.5
Q ss_pred CCCCEEEEEeCCCcEEEEeCCCCeEEEEec---ccCCcceEEEEEecCCCCcEEEEEECCCcEEEEECCCCCCCCC----
Q 004477 60 SKGSLLISGSDDTHINVWSYSSRKLLHSIE---TGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGL---- 132 (751)
Q Consensus 60 ~dg~~LaSgs~Dg~I~IWd~~~~~~~~~l~---~~h~~~V~~v~fsp~s~~~~l~sgs~Dg~V~vwd~~~~~~~~~---- 132 (751)
+.|--|+.|=.-|.|.+.|....+....+. .-.+..|+|++|.|.. +.+++.+-.+|.+.++|....-+...
T Consensus 183 ~~g~dllIGf~tGqvq~idp~~~~~sklfne~r~i~ktsvT~ikWvpg~-~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~ 261 (636)
T KOG2394|consen 183 PKGLDLLIGFTTGQVQLIDPINFEVSKLFNEERLINKSSVTCIKWVPGS-DSLFLVAHASGNLYLYDKEIVCGATAPSYQ 261 (636)
T ss_pred CCCcceEEeeccCceEEecchhhHHHHhhhhcccccccceEEEEEEeCC-CceEEEEEecCceEEeeccccccCCCCccc
Confidence 456678888888889988876522211110 1234789999999996 56777778899999998753211110
Q ss_pred --CC------------CCCCCceeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCCCCCCCCCCccceEEE
Q 004477 133 --DD------------NAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILL 198 (751)
Q Consensus 133 --~~------------~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~~~~~~~~~~~~l~ 198 (751)
.. ....|+..+.--.+.|...+|+| ++.+||+.|.||.+||||+.+.+..
T Consensus 262 ~~k~~~~f~i~t~ksk~~rNPv~~w~~~~g~in~f~FS~-DG~~LA~VSqDGfLRvF~fdt~eLl--------------- 325 (636)
T KOG2394|consen 262 ALKDGDQFAILTSKSKKTRNPVARWHIGEGSINEFAFSP-DGKYLATVSQDGFLRIFDFDTQELL--------------- 325 (636)
T ss_pred ccCCCCeeEEeeeeccccCCccceeEeccccccceeEcC-CCceEEEEecCceEEEeeccHHHHH---------------
Confidence 00 00123333434456899999999 8899999999999999999886532
Q ss_pred ecccCceecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCccccCCCCCCCCccccccccccccCCcc
Q 004477 199 DLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRS 278 (751)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 278 (751)
......-..+.|++|+| |++||++|+.|-.|.||.+...+.+.. .+||.
T Consensus 326 ----------g~mkSYFGGLLCvcWSP-DGKyIvtGGEDDLVtVwSf~erRVVAR--------------------GqGHk 374 (636)
T KOG2394|consen 326 ----------GVMKSYFGGLLCVCWSP-DGKYIVTGGEDDLVTVWSFEERRVVAR--------------------GQGHK 374 (636)
T ss_pred ----------HHHHhhccceEEEEEcC-CccEEEecCCcceEEEEEeccceEEEe--------------------ccccc
Confidence 01111235689999999 589999999999999999876543321 14566
Q ss_pred ccceEEEEEc
Q 004477 279 SLHLTHVTFS 288 (751)
Q Consensus 279 ~~~vt~v~fs 288 (751)
+ +|+.|+|+
T Consensus 375 S-WVs~VaFD 383 (636)
T KOG2394|consen 375 S-WVSVVAFD 383 (636)
T ss_pred c-ceeeEeec
Confidence 5 68888887
No 215
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.24 E-value=7.1e-11 Score=113.88 Aligned_cols=163 Identities=17% Similarity=0.268 Sum_probs=124.0
Q ss_pred cCCCcEEEEEECC-CCC--EEEEEeCCCcEEEEeCCCCeEEEEec---------ccCCcceEEEEEecCCCCcEEEEEEC
Q 004477 48 GHQGCVNAISWNS-KGS--LLISGSDDTHINVWSYSSRKLLHSIE---------TGHSANVFCTKFVPETSDELVVSGAG 115 (751)
Q Consensus 48 gH~~~V~~l~~s~-dg~--~LaSgs~Dg~I~IWd~~~~~~~~~l~---------~~h~~~V~~v~fsp~s~~~~l~sgs~ 115 (751)
+..+.|.|..|.. +++ +|+.|-.+|.|.+||+.++..+..+. ..|..+|.++.|.+.. ..=++|+.
T Consensus 148 ~Klgsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~--~rGisgga 225 (323)
T KOG0322|consen 148 SKLGSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSC--DRGISGGA 225 (323)
T ss_pred cccCceeeeeccccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhh--cCCcCCCc
Confidence 4567888888754 333 56778899999999999885444432 4799999999998773 44577888
Q ss_pred CCcEEEEECCCCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCCCCCCCCCCccce
Q 004477 116 DAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRN 195 (751)
Q Consensus 116 Dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~~~~~~~~~~~ 195 (751)
+..+..|.+....+.+. ......-.+-.|..+..-| ++++++|+|.|+.||+|..++..++
T Consensus 226 ~dkl~~~Sl~~s~gslq------~~~e~~lknpGv~gvrIRp-D~KIlATAGWD~RiRVyswrtl~pL------------ 286 (323)
T KOG0322|consen 226 DDKLVMYSLNHSTGSLQ------IRKEITLKNPGVSGVRIRP-DGKILATAGWDHRIRVYSWRTLNPL------------ 286 (323)
T ss_pred cccceeeeeccccCccc------ccceEEecCCCccceEEcc-CCcEEeecccCCcEEEEEeccCCch------------
Confidence 88999999987544331 1122222344577888888 7799999999999999999998753
Q ss_pred EEEecccCceecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeC
Q 004477 196 ILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDR 245 (751)
Q Consensus 196 ~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~ 245 (751)
.....|...|++++|+|+ ..+++.++.|+.|-+|++
T Consensus 287 -------------AVLkyHsagvn~vAfspd-~~lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 287 -------------AVLKYHSAGVNAVAFSPD-CELMAAASKDARISLWKL 322 (323)
T ss_pred -------------hhhhhhhcceeEEEeCCC-CchhhhccCCceEEeeec
Confidence 223337789999999994 789999999999999986
No 216
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.24 E-value=7.8e-10 Score=111.72 Aligned_cols=195 Identities=12% Similarity=0.148 Sum_probs=139.0
Q ss_pred cEEEEEECCCCCEEEEEeCCC--cEEEEeCCCCeEEEEecccCCcceEEEEEecCCCCcEEEEEECCCcEEEEECCCCCC
Q 004477 52 CVNAISWNSKGSLLISGSDDT--HINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSG 129 (751)
Q Consensus 52 ~V~~l~~s~dg~~LaSgs~Dg--~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~Dg~V~vwd~~~~~~ 129 (751)
.|--+-|+. .++|..+.+. .++|.+.+.+..+..+. ....|.+|++... .|+.+=. ..|+|||++..
T Consensus 48 ~IvEmLFSS--SLvaiV~~~qpr~Lkv~~~Kk~~~ICe~~--fpt~IL~VrmNr~----RLvV~Le-e~IyIydI~~M-- 116 (391)
T KOG2110|consen 48 SIVEMLFSS--SLVAIVSIKQPRKLKVVHFKKKTTICEIF--FPTSILAVRMNRK----RLVVCLE-ESIYIYDIKDM-- 116 (391)
T ss_pred EEEEeeccc--ceeEEEecCCCceEEEEEcccCceEEEEe--cCCceEEEEEccc----eEEEEEc-ccEEEEecccc--
Confidence 455555664 4666655544 49999999888877763 5667999999876 4444443 34999999963
Q ss_pred CCCCCCCCCCceeecc---cCCceeEEEEecCCCCEEEE-Ee-CCCcEEEEecCCCCCCCCCCCCCCccceEEEecccCc
Q 004477 130 RGLDDNAITPSALYQC---HTRRVKKLAVEVGNPHVVWS-AS-EDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGA 204 (751)
Q Consensus 130 ~~~~~~~~~~~~~~~~---h~~~V~~l~~sp~~~~~l~s-~s-~Dg~I~iwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~ 204 (751)
++++++.. +...+..+++++. +.+++- ++ .-|.|.+||+.+-+..
T Consensus 117 --------klLhTI~t~~~n~~gl~AlS~n~~-n~ylAyp~s~t~GdV~l~d~~nl~~v--------------------- 166 (391)
T KOG2110|consen 117 --------KLLHTIETTPPNPKGLCALSPNNA-NCYLAYPGSTTSGDVVLFDTINLQPV--------------------- 166 (391)
T ss_pred --------eeehhhhccCCCccceEeeccCCC-CceEEecCCCCCceEEEEEcccceee---------------------
Confidence 55665543 3444555555542 234543 22 3589999998876532
Q ss_pred eecccCCCCCccceEEEEEeCCCCcEEEEEeCCCe-EEEEeCCCCCCccccCCCCCCCCccccccccccccCCccccceE
Q 004477 205 KRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAF-ARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLT 283 (751)
Q Consensus 205 ~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~-IriwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~vt 283 (751)
.....|...+.+++|++ +|.+||+++..|+ ||||.+.+++.+.++..+ -....|.
T Consensus 167 ----~~I~aH~~~lAalafs~-~G~llATASeKGTVIRVf~v~~G~kl~eFRRG-------------------~~~~~Iy 222 (391)
T KOG2110|consen 167 ----NTINAHKGPLAALAFSP-DGTLLATASEKGTVIRVFSVPEGQKLYEFRRG-------------------TYPVSIY 222 (391)
T ss_pred ----eEEEecCCceeEEEECC-CCCEEEEeccCceEEEEEEcCCccEeeeeeCC-------------------ceeeEEE
Confidence 12224888999999999 5899999999886 589999988877665432 1222599
Q ss_pred EEEEcCCCCEEEEEeCCCcEEEEECCCC
Q 004477 284 HVTFSPNGEEVLLSYSGEHVYLMDVNHA 311 (751)
Q Consensus 284 ~v~fspdg~~Ll~~s~d~~I~lwdl~~~ 311 (751)
+++|+|++++|.+.+..++|+||.+...
T Consensus 223 SL~Fs~ds~~L~~sS~TeTVHiFKL~~~ 250 (391)
T KOG2110|consen 223 SLSFSPDSQFLAASSNTETVHIFKLEKV 250 (391)
T ss_pred EEEECCCCCeEEEecCCCeEEEEEeccc
Confidence 9999999999999999999999999883
No 217
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.24 E-value=2.4e-11 Score=125.47 Aligned_cols=214 Identities=14% Similarity=0.177 Sum_probs=163.2
Q ss_pred cEEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEecccCCcceEEEEEecCCCCcEEEEEECCCcEEEEECCCCCCCC
Q 004477 52 CVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRG 131 (751)
Q Consensus 52 ~V~~l~~s~dg~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~Dg~V~vwd~~~~~~~~ 131 (751)
.-..+.++.+|++|+.|+..|.|-.+|..++++...+ .-...|.++.|..+ .++||.+ ....+.|||-..
T Consensus 131 GPY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~Ei--~v~Etv~Dv~~LHn--eq~~AVA-QK~y~yvYD~~G----- 200 (545)
T KOG1272|consen 131 GPYHLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHFEI--NVMETVRDVTFLHN--EQFFAVA-QKKYVYVYDNNG----- 200 (545)
T ss_pred CCeeeeecCCccEEEecCCccceeeeecccceeeeee--ehhhhhhhhhhhcc--hHHHHhh-hhceEEEecCCC-----
Confidence 4457889999999999999999999999999888877 23567999999988 5666654 678899999763
Q ss_pred CCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCCCCCCCCCCccceEEEecccCceecccCC
Q 004477 132 LDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADP 211 (751)
Q Consensus 132 ~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 211 (751)
..++.++. ...|..+.|-| .-.+|+++++.|.++--|+.+++.... .
T Consensus 201 ------tElHClk~-~~~v~rLeFLP-yHfLL~~~~~~G~L~Y~DVS~GklVa~-------------------------~ 247 (545)
T KOG1272|consen 201 ------TELHCLKR-HIRVARLEFLP-YHFLLVAASEAGFLKYQDVSTGKLVAS-------------------------I 247 (545)
T ss_pred ------cEEeehhh-cCchhhhcccc-hhheeeecccCCceEEEeechhhhhHH-------------------------H
Confidence 22555554 35688999999 558899999999999999999874311 1
Q ss_pred CCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCccccCCCCCCCCccccccccccccCCccccceEEEEEcCCC
Q 004477 212 PKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNG 291 (751)
Q Consensus 212 ~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~vt~v~fspdg 291 (751)
......+..+.-+|. .-.+-+|...|+|.+|...+.+++..+ ..|.+ +|.+|++.++|
T Consensus 248 ~t~~G~~~vm~qNP~-NaVih~GhsnGtVSlWSP~skePLvKi--------------------LcH~g-~V~siAv~~~G 305 (545)
T KOG1272|consen 248 RTGAGRTDVMKQNPY-NAVIHLGHSNGTVSLWSPNSKEPLVKI--------------------LCHRG-PVSSIAVDRGG 305 (545)
T ss_pred HccCCccchhhcCCc-cceEEEcCCCceEEecCCCCcchHHHH--------------------HhcCC-CcceEEECCCC
Confidence 112345667788885 568889999999999999887765433 12444 69999999999
Q ss_pred CEEEEEeCCCcEEEEECCCCCcceeeeecCCCceeEEeCC
Q 004477 292 EEVLLSYSGEHVYLMDVNHAGGRAMRYTVGDASKIMSFTP 331 (751)
Q Consensus 292 ~~Ll~~s~d~~I~lwdl~~~~~~~~~~~~~~~~~~~~~sp 331 (751)
+|+++++.|..++|||+++-.+....+. ......+++|-
T Consensus 306 ~YMaTtG~Dr~~kIWDlR~~~ql~t~~t-p~~a~~ls~Sq 344 (545)
T KOG1272|consen 306 RYMATTGLDRKVKIWDLRNFYQLHTYRT-PHPASNLSLSQ 344 (545)
T ss_pred cEEeecccccceeEeeeccccccceeec-CCCcccccccc
Confidence 9999999999999999998553333333 44444444443
No 218
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.21 E-value=6.8e-09 Score=103.10 Aligned_cols=186 Identities=20% Similarity=0.325 Sum_probs=134.7
Q ss_pred Cccc-ccccccchhhhccccccEEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCC-CCeEEEEecccC-CcceEEE
Q 004477 23 RPDV-NHSLQMHSSLVRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYS-SRKLLHSIETGH-SANVFCT 99 (751)
Q Consensus 23 ~~~~-~~~l~~~~~~i~~~~~~~~L~gH~~~V~~l~~s~dg~~LaSgs~Dg~I~IWd~~-~~~~~~~l~~~h-~~~V~~v 99 (751)
+|.+ .+.|-+|++..++ ++.+|. ...+|.+|.+.++ .|+.. ..++|.||... +-+.++.+.+.- ... -+
T Consensus 69 ~pky~pNkviIWDD~k~~--~i~el~-f~~~I~~V~l~r~--riVvv-l~~~I~VytF~~n~k~l~~~et~~NPkG--lC 140 (346)
T KOG2111|consen 69 RPKYPPNKVIIWDDLKER--CIIELS-FNSEIKAVKLRRD--RIVVV-LENKIYVYTFPDNPKLLHVIETRSNPKG--LC 140 (346)
T ss_pred CCCCCCceEEEEecccCc--EEEEEE-eccceeeEEEcCC--eEEEE-ecCeEEEEEcCCChhheeeeecccCCCc--eE
Confidence 3444 6889999976555 455554 4678999999865 55555 45689999987 556666663322 233 33
Q ss_pred EEecCCCCcEEEE-EECCCcEEEEECCCCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCCc-EEEEec
Q 004477 100 KFVPETSDELVVS-GAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGT-LRQHDF 177 (751)
Q Consensus 100 ~fsp~s~~~~l~s-gs~Dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~-I~iwDl 177 (751)
+.+|..+..+||- |-.-|.|+|-|+..... .+...+..|...|.+++.+- .|.++||+|..|| |||||.
T Consensus 141 ~~~~~~~k~~LafPg~k~GqvQi~dL~~~~~--------~~p~~I~AH~s~Iacv~Ln~-~Gt~vATaStkGTLIRIFdt 211 (346)
T KOG2111|consen 141 SLCPTSNKSLLAFPGFKTGQVQIVDLASTKP--------NAPSIINAHDSDIACVALNL-QGTLVATASTKGTLIRIFDT 211 (346)
T ss_pred eecCCCCceEEEcCCCccceEEEEEhhhcCc--------CCceEEEcccCceeEEEEcC-CccEEEEeccCcEEEEEEEc
Confidence 4555543445553 44568999999985321 23578899999999999998 6799999999998 689999
Q ss_pred CCCCCCCCCCCCCCccceEEEecccCceecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCC
Q 004477 178 RQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLP 249 (751)
Q Consensus 178 r~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~ 249 (751)
++++.+ ..++.|. ....|.+|+||| +..+|++++..|+|+|+.++...
T Consensus 212 ~~g~~l--------------~E~RRG~---------d~A~iy~iaFSp-~~s~LavsSdKgTlHiF~l~~~~ 259 (346)
T KOG2111|consen 212 EDGTLL--------------QELRRGV---------DRADIYCIAFSP-NSSWLAVSSDKGTLHIFSLRDTE 259 (346)
T ss_pred CCCcEe--------------eeeecCC---------chheEEEEEeCC-CccEEEEEcCCCeEEEEEeecCC
Confidence 998744 2233332 456899999999 58999999999999999998644
No 219
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.21 E-value=4.4e-10 Score=119.02 Aligned_cols=259 Identities=16% Similarity=0.189 Sum_probs=167.1
Q ss_pred ccccchhhhccccccEEeccCCCcEEEEEECCCCCE-EEEEeCCCcEEEEeCCCCeEEEE---------e--c-------
Q 004477 29 SLQMHSSLVRRLSQERELEGHQGCVNAISWNSKGSL-LISGSDDTHINVWSYSSRKLLHS---------I--E------- 89 (751)
Q Consensus 29 ~l~~~~~~i~~~~~~~~L~gH~~~V~~l~~s~dg~~-LaSgs~Dg~I~IWd~~~~~~~~~---------l--~------- 89 (751)
.++-.....+++.+++.|. |...-+.|..+|||+| ||||-..-.|++||+..-.+... + +
T Consensus 31 ~lkkd~~~~~rieLiQdfe-~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSLKFERhlDae~V~feiLsDD~SK~ 109 (703)
T KOG2321|consen 31 QLKKDVDYRQRIELIQDFE-MPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSLKFERHLDAEVVDFEILSDDYSKS 109 (703)
T ss_pred HHhhchHHHHHHHHHHhcC-CccccceeEecCCCcEEEEecccCCceEEEEcccceeeeeecccccceeEEEeccchhhh
Confidence 3344445667777777775 8888899999999995 56777888999999864321100 0 0
Q ss_pred ---------ccC-----------CcceEEEEEecCCCCcEEEEEECCCcEEEEECCCCCCCCCCCCCCCCceeecccCCc
Q 004477 90 ---------TGH-----------SANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRR 149 (751)
Q Consensus 90 ---------~~h-----------~~~V~~v~fsp~s~~~~l~sgs~Dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~ 149 (751)
.-| ...-.+++++..+ -.+++. +....|+=++++. | .-+..+....+.
T Consensus 110 v~L~~DR~IefHak~G~hy~~RIP~~GRDm~y~~~s-cDly~~-gsg~evYRlNLEq--G--------rfL~P~~~~~~~ 177 (703)
T KOG2321|consen 110 VFLQNDRTIEFHAKYGRHYRTRIPKFGRDMKYHKPS-CDLYLV-GSGSEVYRLNLEQ--G--------RFLNPFETDSGE 177 (703)
T ss_pred eEeecCceeeehhhcCeeeeeecCcCCccccccCCC-ccEEEe-ecCcceEEEEccc--c--------cccccccccccc
Confidence 000 0111233333332 233333 3345566667764 3 335666666789
Q ss_pred eeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCCCCCCCCCCccceEEEecccCceecccCC--CCCccceEEEEEeCCC
Q 004477 150 VKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADP--PKQTLSLKSCDISSTR 227 (751)
Q Consensus 150 V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~--~~~~~~v~~i~~sp~~ 227 (751)
+++|..++ ...+|++|+.||.|-.||.|....+..... ... +... ......|+++.|+-+
T Consensus 178 lN~v~in~-~hgLla~Gt~~g~VEfwDpR~ksrv~~l~~------------~~~----v~s~pg~~~~~svTal~F~d~- 239 (703)
T KOG2321|consen 178 LNVVSINE-EHGLLACGTEDGVVEFWDPRDKSRVGTLDA------------ASS----VNSHPGGDAAPSVTALKFRDD- 239 (703)
T ss_pred ceeeeecC-ccceEEecccCceEEEecchhhhhheeeec------------ccc----cCCCccccccCcceEEEecCC-
Confidence 99999999 447999999999999999998775421111 000 0111 113456999999984
Q ss_pred CcEEEEEeCCCeEEEEeCCCCCCccccCCCCCCCCccccccccccccCCccccceEEEEEcCCCC-EEEEEeCCCcEEEE
Q 004477 228 PHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGE-EVLLSYSGEHVYLM 306 (751)
Q Consensus 228 ~~~l~sgs~D~~IriwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~vt~v~fspdg~-~Ll~~s~d~~I~lw 306 (751)
+-.+++|..+|.|.|||+|..+++..-. ++ ...+|..+.|.+.+. --+++.....++||
T Consensus 240 gL~~aVGts~G~v~iyDLRa~~pl~~kd-------------------h~-~e~pi~~l~~~~~~~q~~v~S~Dk~~~kiW 299 (703)
T KOG2321|consen 240 GLHVAVGTSTGSVLIYDLRASKPLLVKD-------------------HG-YELPIKKLDWQDTDQQNKVVSMDKRILKIW 299 (703)
T ss_pred ceeEEeeccCCcEEEEEcccCCceeecc-------------------cC-CccceeeecccccCCCceEEecchHHhhhc
Confidence 8999999999999999999877653211 11 123688999987533 34555667899999
Q ss_pred ECCCCCcceeeeecCCCceeEEeCCCCCCcccC
Q 004477 307 DVNHAGGRAMRYTVGDASKIMSFTPTLNGLELQ 339 (751)
Q Consensus 307 dl~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~ 339 (751)
|-.+++.... ......++.+|+-|......++
T Consensus 300 d~~~Gk~~as-iEpt~~lND~C~~p~sGm~f~A 331 (703)
T KOG2321|consen 300 DECTGKPMAS-IEPTSDLNDFCFVPGSGMFFTA 331 (703)
T ss_pred ccccCCceee-ccccCCcCceeeecCCceEEEe
Confidence 9999764333 3333447788888876655444
No 220
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.20 E-value=1.6e-09 Score=107.49 Aligned_cols=220 Identities=10% Similarity=0.133 Sum_probs=140.8
Q ss_pred EEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEecccCCcceEEEEEecCCCCcEEE-EEECC------CcEEEEECC
Q 004477 53 VNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVV-SGAGD------AEVRLFNLS 125 (751)
Q Consensus 53 V~~l~~s~dg~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~s~~~~l~-sgs~D------g~V~vwd~~ 125 (751)
...++|+.|...++.|.++| .+||+++.-+..... .-+.+++.-+...--+ ++|+ .|+.. ..|.|||=.
T Consensus 8 ~lsvs~NQD~ScFava~~~G-friyn~~P~ke~~~r-~~~~~G~~~veMLfR~--N~laLVGGg~~pky~pNkviIWDD~ 83 (346)
T KOG2111|consen 8 TLSVSFNQDHSCFAVATDTG-FRIYNCDPFKESASR-QFIDGGFKIVEMLFRS--NYLALVGGGSRPKYPPNKVIIWDDL 83 (346)
T ss_pred eeEEEEccCCceEEEEecCc-eEEEecCchhhhhhh-ccccCchhhhhHhhhh--ceEEEecCCCCCCCCCceEEEEecc
Confidence 44599999999999887765 899998754332222 2233333333333332 3443 45444 579999933
Q ss_pred CCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCC-CCCCCCC-----------------
Q 004477 126 RFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQG-SSCPPAG----------------- 187 (751)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~-~~~~~~~----------------- 187 (751)
. . .++..+. -..+|+++.+.+ + .++.. .+..|.+|.+... +......
T Consensus 84 k--~--------~~i~el~-f~~~I~~V~l~r-~--riVvv-l~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~~k 148 (346)
T KOG2111|consen 84 K--E--------RCIIELS-FNSEIKAVKLRR-D--RIVVV-LENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTSNK 148 (346)
T ss_pred c--C--------cEEEEEE-eccceeeEEEcC-C--eEEEE-ecCeEEEEEcCCChhheeeeecccCCCceEeecCCCCc
Confidence 2 1 4455554 578899999986 3 34333 3578888877632 2111000
Q ss_pred -----CCCCccceEEEecccCceecccCCCCCccceEEEEEeCCCCcEEEEEeCCCe-EEEEeCCCCCCccccCCCCCCC
Q 004477 188 -----SSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAF-ARLYDRRMLPPLTSCQKRMSPP 261 (751)
Q Consensus 188 -----~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~-IriwD~~~~~~~~~~~~~~~~~ 261 (751)
.+.......+.++.......-...+.|...|.|++++.+ |.++|+++..|+ |||||..++.++.++..
T Consensus 149 ~~LafPg~k~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~-Gt~vATaStkGTLIRIFdt~~g~~l~E~RR----- 222 (346)
T KOG2111|consen 149 SLLAFPGFKTGQVQIVDLASTKPNAPSIINAHDSDIACVALNLQ-GTLVATASTKGTLIRIFDTEDGTLLQELRR----- 222 (346)
T ss_pred eEEEcCCCccceEEEEEhhhcCcCCceEEEcccCceeEEEEcCC-ccEEEEeccCcEEEEEEEcCCCcEeeeeec-----
Confidence 011111222333333222112334568899999999995 899999999986 69999999887665432
Q ss_pred CccccccccccccCCccccceEEEEEcCCCCEEEEEeCCCcEEEEECCCC
Q 004477 262 PCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHA 311 (751)
Q Consensus 262 ~~~~~~~~~~~~~~g~~~~~vt~v~fspdg~~Ll~~s~d~~I~lwdl~~~ 311 (751)
|-....|.+++||||+.+|+++|..|+|+||.+...
T Consensus 223 --------------G~d~A~iy~iaFSp~~s~LavsSdKgTlHiF~l~~~ 258 (346)
T KOG2111|consen 223 --------------GVDRADIYCIAFSPNSSWLAVSSDKGTLHIFSLRDT 258 (346)
T ss_pred --------------CCchheEEEEEeCCCccEEEEEcCCCeEEEEEeecC
Confidence 222225999999999999999999999999999874
No 221
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.20 E-value=3.6e-11 Score=126.22 Aligned_cols=104 Identities=18% Similarity=0.358 Sum_probs=90.5
Q ss_pred cccEEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEecccCCcceEEEEEecCCCCcEEEEEECCCcEE
Q 004477 41 SQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVR 120 (751)
Q Consensus 41 ~~~~~L~gH~~~V~~l~~s~dg~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~Dg~V~ 120 (751)
.++..+.--.++|+..+|+|||++||+.|.||.++|+|+.+.+++..+ +..-+...||+|+|| |++|++|+.|..|.
T Consensus 281 NPv~~w~~~~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~eLlg~m-kSYFGGLLCvcWSPD--GKyIvtGGEDDLVt 357 (636)
T KOG2394|consen 281 NPVARWHIGEGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQELLGVM-KSYFGGLLCVCWSPD--GKYIVTGGEDDLVT 357 (636)
T ss_pred CccceeEeccccccceeEcCCCceEEEEecCceEEEeeccHHHHHHHH-HhhccceEEEEEcCC--ccEEEecCCcceEE
Confidence 455555556679999999999999999999999999999988777666 566688999999999 89999999999999
Q ss_pred EEECCCCCCCCCCCCCCCCceeecccCCceeEEEEec
Q 004477 121 LFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEV 157 (751)
Q Consensus 121 vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp 157 (751)
||.+... +.+..-++|+..|..++|.|
T Consensus 358 VwSf~er----------RVVARGqGHkSWVs~VaFDp 384 (636)
T KOG2394|consen 358 VWSFEER----------RVVARGQGHKSWVSVVAFDP 384 (636)
T ss_pred EEEeccc----------eEEEeccccccceeeEeecc
Confidence 9999854 45677789999999999974
No 222
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.19 E-value=9.4e-10 Score=107.94 Aligned_cols=148 Identities=14% Similarity=0.216 Sum_probs=101.9
Q ss_pred EEEECCCCCEEEEEeC---C-------CcEEEEeCC-CCeEEEEecccCCcceEEEEEecCCCCcEEE--EEECCCcEEE
Q 004477 55 AISWNSKGSLLISGSD---D-------THINVWSYS-SRKLLHSIETGHSANVFCTKFVPETSDELVV--SGAGDAEVRL 121 (751)
Q Consensus 55 ~l~~s~dg~~LaSgs~---D-------g~I~IWd~~-~~~~~~~l~~~h~~~V~~v~fsp~s~~~~l~--sgs~Dg~V~v 121 (751)
.+.|+++|++|+.-.. | +...||-+. ....+..+.....+.|.+++|+|+ ++.|+ +|..+..|.+
T Consensus 10 ~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~--g~~favi~g~~~~~v~l 87 (194)
T PF08662_consen 10 KLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSPN--GNEFAVIYGSMPAKVTL 87 (194)
T ss_pred EEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECcC--CCEEEEEEccCCcccEE
Confidence 6889999987764432 1 224455542 223344443345567999999999 56654 3456789999
Q ss_pred EECCCCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCC---CcEEEEecCCCCCCCCCCCCCCccceEEE
Q 004477 122 FNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASED---GTLRQHDFRQGSSCPPAGSSHQECRNILL 198 (751)
Q Consensus 122 wd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~D---g~I~iwDlr~~~~~~~~~~~~~~~~~~l~ 198 (751)
||++. +++..+ +...++.|.|+| ++++|++++.+ |.|.+||+++.+.+.
T Consensus 88 yd~~~-----------~~i~~~--~~~~~n~i~wsP-~G~~l~~~g~~n~~G~l~~wd~~~~~~i~-------------- 139 (194)
T PF08662_consen 88 YDVKG-----------KKIFSF--GTQPRNTISWSP-DGRFLVLAGFGNLNGDLEFWDVRKKKKIS-------------- 139 (194)
T ss_pred EcCcc-----------cEeEee--cCCCceEEEECC-CCCEEEEEEccCCCcEEEEEECCCCEEee--------------
Confidence 99973 345555 467788999999 67888887653 679999999655321
Q ss_pred ecccCceecccCCCCCccceEEEEEeCCCCcEEEEEeC------CCeEEEEeCC
Q 004477 199 DLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGS------DAFARLYDRR 246 (751)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~------D~~IriwD~~ 246 (751)
.. ....++.++|+|+ +++|+++.. |+.++||+..
T Consensus 140 -----------~~--~~~~~t~~~WsPd-Gr~~~ta~t~~r~~~dng~~Iw~~~ 179 (194)
T PF08662_consen 140 -----------TF--EHSDATDVEWSPD-GRYLATATTSPRLRVDNGFKIWSFQ 179 (194)
T ss_pred -----------cc--ccCcEEEEEEcCC-CCEEEEEEeccceeccccEEEEEec
Confidence 00 1234789999995 788888764 7899999985
No 223
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.18 E-value=2e-09 Score=119.79 Aligned_cols=270 Identities=12% Similarity=0.138 Sum_probs=169.6
Q ss_pred cccccccccchhhh--ccccccEEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEecccCCcceEEEEE
Q 004477 24 PDVNHSLQMHSSLV--RRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKF 101 (751)
Q Consensus 24 ~~~~~~l~~~~~~i--~~~~~~~~L~gH~~~V~~l~~s~dg~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~V~~v~f 101 (751)
.+.+.++.+|..+- ..-...+.|.=|...|++++|+++|.+|.||+..+.+.+|.+.+++ ++++..-.+.|..+.+
T Consensus 223 ~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T~~--kqfLPRLgs~I~~i~v 300 (792)
T KOG1963|consen 223 GDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNSLSFSSDGAYLLSGGREGVLVLWQLETGK--KQFLPRLGSPILHIVV 300 (792)
T ss_pred eccCCcEEEEeccccccccccceEEEecccccceeEEecCCceEeecccceEEEEEeecCCC--cccccccCCeeEEEEE
Confidence 45678899999887 2233456788999999999999999999999999999999999887 4555677899999999
Q ss_pred ecCCCCcEEEEEECCCcEEEEECCCCCCCCC-CCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCC
Q 004477 102 VPETSDELVVSGAGDAEVRLFNLSRFSGRGL-DDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQG 180 (751)
Q Consensus 102 sp~s~~~~l~sgs~Dg~V~vwd~~~~~~~~~-~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~ 180 (751)
+|+ +.+.+....|..|.+-.......+.. ..........-....+-.+.++++| -.+.++-.+.-|.|.+||+-+.
T Consensus 301 S~d--s~~~sl~~~DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~~~idp-r~~~~vln~~~g~vQ~ydl~td 377 (792)
T KOG1963|consen 301 SPD--SDLYSLVLEDNQIHLIKASDLEIKSTISGIKPPTPSTKTRPQSLTTGVSIDP-RTNSLVLNGHPGHVQFYDLYTD 377 (792)
T ss_pred cCC--CCeEEEEecCceEEEEeccchhhhhhccCccCCCccccccccccceeEEEcC-CCCceeecCCCceEEEEecccc
Confidence 999 67777778899999987754221110 0000000000112345567788888 5567778889999999999876
Q ss_pred CCCCCCCCC-----CCc-----------------------------------cceEEEecccCcee----cccCCCCCcc
Q 004477 181 SSCPPAGSS-----HQE-----------------------------------CRNILLDLRCGAKR----SLADPPKQTL 216 (751)
Q Consensus 181 ~~~~~~~~~-----~~~-----------------------------------~~~~l~~~~~~~~~----~~~~~~~~~~ 216 (751)
+........ ..+ ..-.+|........ .....|....
T Consensus 378 ~~i~~~~v~~~n~~~~~~n~~v~itav~~~~~gs~maT~E~~~d~~~~~~~e~~LKFW~~n~~~kt~~L~T~I~~PH~~~ 457 (792)
T KOG1963|consen 378 STIYKLQVCDENYSDGDVNIQVGITAVARSRFGSWMATLEARIDKFNFFDGEVSLKFWQYNPNSKTFILNTKINNPHGNA 457 (792)
T ss_pred ceeeeEEEEeecccCCcceeEEeeeeehhhccceEEEEeeeeehhhhccCceEEEEEEEEcCCcceeEEEEEEecCCCce
Confidence 644211000 000 00011111110000 0011121222
Q ss_pred ceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCccccCCCCCCCCccccccccccccCCccccceEEEEEcCCCCEEEE
Q 004477 217 SLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLL 296 (751)
Q Consensus 217 ~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~vt~v~fspdg~~Ll~ 296 (751)
.+..+..+|.....+++++.||.++||-+...+.+...... =.|.. ..+ -| ..+++.++|+.||. +++
T Consensus 458 ~vat~~~~~~rs~~~vta~~dg~~KiW~~~~~~n~~k~~s~---W~c~~---i~s----y~-k~~i~a~~fs~dGs-lla 525 (792)
T KOG1963|consen 458 FVATIFLNPTRSVRCVTASVDGDFKIWVFTDDSNIYKKSSN---WTCKA---IGS----YH-KTPITALCFSQDGS-LLA 525 (792)
T ss_pred eEEEEEecCcccceeEEeccCCeEEEEEEecccccCcCccc---eEEee---eec----cc-cCcccchhhcCCCc-EEE
Confidence 33344445544458999999999999998654433221100 00110 000 12 23689999999996 566
Q ss_pred EeCCCcEEEEECCC
Q 004477 297 SYSGEHVYLMDVNH 310 (751)
Q Consensus 297 ~s~d~~I~lwdl~~ 310 (751)
.+.++.|.+||..+
T Consensus 526 ~s~~~~Itiwd~~~ 539 (792)
T KOG1963|consen 526 VSFDDTITIWDYDT 539 (792)
T ss_pred EecCCEEEEecCCC
Confidence 66788999999988
No 224
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.17 E-value=3.3e-11 Score=124.46 Aligned_cols=217 Identities=15% Similarity=0.193 Sum_probs=159.5
Q ss_pred CcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEecccCCcceEEEEEecCCCCcEEEEEECCCcEEEEECCCCCCC
Q 004477 51 GCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGR 130 (751)
Q Consensus 51 ~~V~~l~~s~dg~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~Dg~V~vwd~~~~~~~ 130 (751)
..|..+.|-.+.+++|.+- ...+.|||- .|..++.+ ..| ..|+-+.|.|.. -+|++++..|.++.-|+.++
T Consensus 171 Etv~Dv~~LHneq~~AVAQ-K~y~yvYD~-~GtElHCl-k~~-~~v~rLeFLPyH--fLL~~~~~~G~L~Y~DVS~G--- 241 (545)
T KOG1272|consen 171 ETVRDVTFLHNEQFFAVAQ-KKYVYVYDN-NGTELHCL-KRH-IRVARLEFLPYH--FLLVAASEAGFLKYQDVSTG--- 241 (545)
T ss_pred hhhhhhhhhcchHHHHhhh-hceEEEecC-CCcEEeeh-hhc-Cchhhhcccchh--heeeecccCCceEEEeechh---
Confidence 3455666666777888774 468999994 57888888 444 569999999994 78889999999999999976
Q ss_pred CCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCCCCCCCCCCccceEEEecccCceecccC
Q 004477 131 GLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLAD 210 (751)
Q Consensus 131 ~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 210 (751)
+.+..+..-.+.+..++-+|-+ -++-+|...|+|.+|.....+++ ..
T Consensus 242 -------klVa~~~t~~G~~~vm~qNP~N-aVih~GhsnGtVSlWSP~skePL-------------------------vK 288 (545)
T KOG1272|consen 242 -------KLVASIRTGAGRTDVMKQNPYN-AVIHLGHSNGTVSLWSPNSKEPL-------------------------VK 288 (545)
T ss_pred -------hhhHHHHccCCccchhhcCCcc-ceEEEcCCCceEEecCCCCcchH-------------------------HH
Confidence 5577777778888889988944 67888999999999988776543 11
Q ss_pred CCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCccccCCCCCCCCccccccccccccCCccccceEEEEEcCC
Q 004477 211 PPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPN 290 (751)
Q Consensus 211 ~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~vt~v~fspd 290 (751)
.-.|...|.+|++.+ +|+|++|.+.|..|+|||+|+...+.++. ...+...++||..
T Consensus 289 iLcH~g~V~siAv~~-~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~----------------------tp~~a~~ls~Sqk 345 (545)
T KOG1272|consen 289 ILCHRGPVSSIAVDR-GGRYMATTGLDRKVKIWDLRNFYQLHTYR----------------------TPHPASNLSLSQK 345 (545)
T ss_pred HHhcCCCcceEEECC-CCcEEeecccccceeEeeeccccccceee----------------------cCCCccccccccc
Confidence 223788999999999 58999999999999999999876443321 1114677888877
Q ss_pred CCEEEEEeCCCcEEEEE-CCCCC----cceeeeecCCCceeEEeCCCCC
Q 004477 291 GEEVLLSYSGEHVYLMD-VNHAG----GRAMRYTVGDASKIMSFTPTLN 334 (751)
Q Consensus 291 g~~Ll~~s~d~~I~lwd-l~~~~----~~~~~~~~~~~~~~~~~sp~~~ 334 (751)
| +++.+....|.||. .-.+. .+-.....+.++..+.|-|--+
T Consensus 346 g--lLA~~~G~~v~iw~d~~~~s~~~~~pYm~H~~~~~V~~l~FcP~ED 392 (545)
T KOG1272|consen 346 G--LLALSYGDHVQIWKDALKGSGHGETPYMNHRCGGPVEDLRFCPYED 392 (545)
T ss_pred c--ceeeecCCeeeeehhhhcCCCCCCcchhhhccCcccccceeccHHH
Confidence 6 66777777999995 33311 1122223345666677777543
No 225
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.16 E-value=8.6e-10 Score=122.68 Aligned_cols=202 Identities=12% Similarity=0.103 Sum_probs=126.1
Q ss_pred CCcEEEEeCCCCeEEEEecccCCcceEEEEEecCCCCcEEEEEECC---CcEEEEECCCCCCCCCCCCCCCCceeecccC
Q 004477 71 DTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGD---AEVRLFNLSRFSGRGLDDNAITPSALYQCHT 147 (751)
Q Consensus 71 Dg~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~D---g~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~ 147 (751)
+..|.|||..... ...+ ..|...|.+.+|+|+ |+.|+.++.+ ..|++||+.++.. ..+..+.+|
T Consensus 183 ~~~i~i~d~dg~~-~~~l-t~~~~~v~~p~wSPD--G~~la~~s~~~~~~~i~i~dl~tg~~--------~~l~~~~g~- 249 (429)
T PRK01742 183 PYEVRVADYDGFN-QFIV-NRSSQPLMSPAWSPD--GSKLAYVSFENKKSQLVVHDLRSGAR--------KVVASFRGH- 249 (429)
T ss_pred eEEEEEECCCCCC-ceEe-ccCCCccccceEcCC--CCEEEEEEecCCCcEEEEEeCCCCce--------EEEecCCCc-
Confidence 5789999986444 4555 678889999999999 7888877654 3699999986421 123333443
Q ss_pred CceeEEEEecCCCCEEEE-EeCCCcEEEE--ecCCCCCCCCCCCCCCccceEEEecccCceecccCCCCCccceEEEEEe
Q 004477 148 RRVKKLAVEVGNPHVVWS-ASEDGTLRQH--DFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDIS 224 (751)
Q Consensus 148 ~~V~~l~~sp~~~~~l~s-~s~Dg~I~iw--Dlr~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~i~~s 224 (751)
...++|+| +++.|+. .+.+|.+.+| |+.++... . + ..+...+....|+
T Consensus 250 --~~~~~wSP-DG~~La~~~~~~g~~~Iy~~d~~~~~~~------------~-----------l---t~~~~~~~~~~wS 300 (429)
T PRK01742 250 --NGAPAFSP-DGSRLAFASSKDGVLNIYVMGANGGTPS------------Q-----------L---TSGAGNNTEPSWS 300 (429)
T ss_pred --cCceeECC-CCCEEEEEEecCCcEEEEEEECCCCCeE------------e-----------e---ccCCCCcCCEEEC
Confidence 34689999 4555554 4578877666 44433210 0 1 1123346778999
Q ss_pred CCCCcEEE-EEeCCCeEEEEeCCCCCCccccCCCCCCCCccccccccccccCCccccceEEEEEcCCCCEEEEEeCCCcE
Q 004477 225 STRPHLLL-VGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHV 303 (751)
Q Consensus 225 p~~~~~l~-sgs~D~~IriwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~vt~v~fspdg~~Ll~~s~d~~I 303 (751)
|+ ++.|+ ++..++...||++...... .... ++.. ..+.|+|||++|+..+.+ .+
T Consensus 301 pD-G~~i~f~s~~~g~~~I~~~~~~~~~------------~~~l--------~~~~---~~~~~SpDG~~ia~~~~~-~i 355 (429)
T PRK01742 301 PD-GQSILFTSDRSGSPQVYRMSASGGG------------ASLV--------GGRG---YSAQISADGKTLVMINGD-NV 355 (429)
T ss_pred CC-CCEEEEEECCCCCceEEEEECCCCC------------eEEe--------cCCC---CCccCCCCCCEEEEEcCC-CE
Confidence 96 56555 5556788889987532110 0000 0111 346799999999888775 56
Q ss_pred EEEECCCCCcceeeeecCCCceeEEeCCCCCCcccCCC
Q 004477 304 YLMDVNHAGGRAMRYTVGDASKIMSFTPTLNGLELQPP 341 (751)
Q Consensus 304 ~lwdl~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~~ 341 (751)
.+||+.++...... .........|+|+...+.+...
T Consensus 356 ~~~Dl~~g~~~~lt--~~~~~~~~~~sPdG~~i~~~s~ 391 (429)
T PRK01742 356 VKQDLTSGSTEVLS--STFLDESPSISPNGIMIIYSST 391 (429)
T ss_pred EEEECCCCCeEEec--CCCCCCCceECCCCCEEEEEEc
Confidence 67999886533221 1223355678888877766543
No 226
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.15 E-value=1.1e-09 Score=109.43 Aligned_cols=236 Identities=14% Similarity=0.233 Sum_probs=152.1
Q ss_pred CCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCeE----EEEecccCC------------cceEEEEEecCCCCcEEEEE
Q 004477 50 QGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKL----LHSIETGHS------------ANVFCTKFVPETSDELVVSG 113 (751)
Q Consensus 50 ~~~V~~l~~s~dg~~LaSgs~Dg~I~IWd~~~~~~----~~~l~~~h~------------~~V~~v~fsp~s~~~~l~sg 113 (751)
.+-|.+|.|..+|.+||||..+|.|.++.-..... .++..+.|. ..|..++|.+..+...++..
T Consensus 25 adiis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLls 104 (433)
T KOG1354|consen 25 ADIISAVEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLLS 104 (433)
T ss_pred hcceeeEEeecccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEEe
Confidence 45788999999999999999999999996432211 222224453 46889999999767778888
Q ss_pred ECCCcEEEEECCCCCCCCC--------C-----------------CCCCCCceee-cccCCceeEEEEecCCCCEEEEEe
Q 004477 114 AGDAEVRLFNLSRFSGRGL--------D-----------------DNAITPSALY-QCHTRRVKKLAVEVGNPHVVWSAS 167 (751)
Q Consensus 114 s~Dg~V~vwd~~~~~~~~~--------~-----------------~~~~~~~~~~-~~h~~~V~~l~~sp~~~~~l~s~s 167 (751)
..|.+|++|-+.....+.. . .....|.+.+ ..|+-.|++|.++. +...++| +
T Consensus 105 tNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~Ns-D~Et~lS-A 182 (433)
T KOG1354|consen 105 TNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNS-DKETFLS-A 182 (433)
T ss_pred cCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecC-ccceEee-c
Confidence 8999999999875322220 0 0001122222 46888899999998 5556644 5
Q ss_pred CCCcEEEEecCCCCCCCCCCCCCCccceEEEecccCceecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCC
Q 004477 168 EDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRM 247 (751)
Q Consensus 168 ~Dg~I~iwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~ 247 (751)
.|=.|-+|++.-...+ .+ +.+.+... ...-..-|++..|+|...++++-.+..|+||+-|+|.
T Consensus 183 DdLRINLWnlei~d~s----------Fn-IVDIKP~n------mEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~ 245 (433)
T KOG1354|consen 183 DDLRINLWNLEIIDQS----------FN-IVDIKPAN------MEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQ 245 (433)
T ss_pred cceeeeeccccccCCc----------ee-EEEccccC------HHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechh
Confidence 6789999998764422 11 22222111 0112345788899998888999999999999999995
Q ss_pred CCCcc----ccCCCCCCCCccccccccccccCCccccceEEEEEcCCCCEEEEEeCCCcEEEEECCCCCcc
Q 004477 248 LPPLT----SCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGR 314 (751)
Q Consensus 248 ~~~~~----~~~~~~~~~~~~~~~~~~~~~~~g~~~~~vt~v~fspdg~~Ll~~s~d~~I~lwdl~~~~~~ 314 (751)
...-. .+..+. .|.....| ... -..|..+.|+++|+|+++-.. -+|+|||++....+
T Consensus 246 ~aLCd~hsKlfEepe-dp~~rsff-sei-------IsSISDvKFs~sGryilsRDy-ltvk~wD~nme~~p 306 (433)
T KOG1354|consen 246 SALCDAHSKLFEEPE-DPSSRSFF-SEI-------ISSISDVKFSHSGRYILSRDY-LTVKLWDLNMEAKP 306 (433)
T ss_pred hhhhcchhhhhcccc-CCcchhhH-HHH-------hhhhhceEEccCCcEEEEecc-ceeEEEeccccCCc
Confidence 43211 111111 11111111 000 114889999999999887543 59999999764433
No 227
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.14 E-value=5.4e-08 Score=105.11 Aligned_cols=198 Identities=16% Similarity=0.169 Sum_probs=121.9
Q ss_pred CEE-EEEeCCCcEEEEeCCCCeEEEEecccCCcceEEEEEecCCCCcEEEEEECCCcEEEEECCCCCCCCCCCCCCCCce
Q 004477 63 SLL-ISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSA 141 (751)
Q Consensus 63 ~~L-aSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~Dg~V~vwd~~~~~~~~~~~~~~~~~~ 141 (751)
+++ ++-..++.|.|.|..+.+.+..+..++ ..-..+.|+|+ ++++++++.|+.|.++|+.+. +.+.
T Consensus 6 ~l~~V~~~~~~~v~viD~~t~~~~~~i~~~~-~~h~~~~~s~D--gr~~yv~~rdg~vsviD~~~~----------~~v~ 72 (369)
T PF02239_consen 6 NLFYVVERGSGSVAVIDGATNKVVARIPTGG-APHAGLKFSPD--GRYLYVANRDGTVSVIDLATG----------KVVA 72 (369)
T ss_dssp GEEEEEEGGGTEEEEEETTT-SEEEEEE-ST-TEEEEEE-TT---SSEEEEEETTSEEEEEETTSS----------SEEE
T ss_pred cEEEEEecCCCEEEEEECCCCeEEEEEcCCC-CceeEEEecCC--CCEEEEEcCCCeEEEEECCcc----------cEEE
Confidence 444 456678999999999999999994433 33456789999 899999999999999999975 4466
Q ss_pred eecccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCCCCCCCCCCccceEEEecccCceecccCCCCCccceEEE
Q 004477 142 LYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSC 221 (751)
Q Consensus 142 ~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~i 221 (751)
.+.. .....++++++++..+++++-.++.+.++|.++.+... ....+.. . .......+..+
T Consensus 73 ~i~~-G~~~~~i~~s~DG~~~~v~n~~~~~v~v~D~~tle~v~--------------~I~~~~~---~-~~~~~~Rv~aI 133 (369)
T PF02239_consen 73 TIKV-GGNPRGIAVSPDGKYVYVANYEPGTVSVIDAETLEPVK--------------TIPTGGM---P-VDGPESRVAAI 133 (369)
T ss_dssp EEE--SSEEEEEEE--TTTEEEEEEEETTEEEEEETTT--EEE--------------EEE--EE-----TTTS---EEEE
T ss_pred EEec-CCCcceEEEcCCCCEEEEEecCCCceeEecccccccee--------------ecccccc---c-ccccCCCceeE
Confidence 6654 34467899999554455556689999999998876321 1110000 0 00023456777
Q ss_pred EEeCCCCcEEEEEeCCCeEEEEeCCCCCCccccCCCCCCCCccccccccccccCCccccceEEEEEcCCCCEEEEEe-CC
Q 004477 222 DISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSY-SG 300 (751)
Q Consensus 222 ~~sp~~~~~l~sgs~D~~IriwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~vt~v~fspdg~~Ll~~s-~d 300 (751)
..+|..+.++++--.-+.|.+.|....+++.. ..+ ..........|+|+++|++++. .+
T Consensus 134 v~s~~~~~fVv~lkd~~~I~vVdy~d~~~~~~-----------~~i---------~~g~~~~D~~~dpdgry~~va~~~s 193 (369)
T PF02239_consen 134 VASPGRPEFVVNLKDTGEIWVVDYSDPKNLKV-----------TTI---------KVGRFPHDGGFDPDGRYFLVAANGS 193 (369)
T ss_dssp EE-SSSSEEEEEETTTTEEEEEETTTSSCEEE-----------EEE---------E--TTEEEEEE-TTSSEEEEEEGGG
T ss_pred EecCCCCEEEEEEccCCeEEEEEeccccccce-----------eee---------cccccccccccCcccceeeeccccc
Confidence 77885443444444458888888776432210 111 0111367889999999987764 57
Q ss_pred CcEEEEECCCCC
Q 004477 301 EHVYLMDVNHAG 312 (751)
Q Consensus 301 ~~I~lwdl~~~~ 312 (751)
+.|-++|..+.+
T Consensus 194 n~i~viD~~~~k 205 (369)
T PF02239_consen 194 NKIAVIDTKTGK 205 (369)
T ss_dssp TEEEEEETTTTE
T ss_pred ceeEEEeeccce
Confidence 899999998854
No 228
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=99.13 E-value=2.9e-09 Score=104.51 Aligned_cols=229 Identities=12% Similarity=0.193 Sum_probs=158.4
Q ss_pred CCCcEEEEEECC---CCC-EEEEEeCCCcEEEEeCCCCeEEEEecccC---C---cceEEEEEecCCCCcEEEEEECCCc
Q 004477 49 HQGCVNAISWNS---KGS-LLISGSDDTHINVWSYSSRKLLHSIETGH---S---ANVFCTKFVPETSDELVVSGAGDAE 118 (751)
Q Consensus 49 H~~~V~~l~~s~---dg~-~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h---~---~~V~~v~fsp~s~~~~l~sgs~Dg~ 118 (751)
-+..++.+.|.. +|. .|+-+..+|.|.++..........+ .+- . ....++.|++. +..++++-.+|.
T Consensus 68 dts~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss~~L-~~ls~~ki~~~~~lslD~~~~--~~~i~vs~s~G~ 144 (339)
T KOG0280|consen 68 DTSTEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESSVHL-RGLSSKKISVVEALSLDISTS--GTKIFVSDSRGS 144 (339)
T ss_pred cccccceeeeeeccCCccceeeeccccceEEEEeeccceeeeee-cccchhhhhheeeeEEEeecc--CceEEEEcCCCc
Confidence 345678888874 566 6778888999999986544433333 111 1 12457889988 677888888899
Q ss_pred EEEEECCCCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCCCCCCCCCCccceEEE
Q 004477 119 VRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILL 198 (751)
Q Consensus 119 V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~~~~~~~~~~~~l~ 198 (751)
+.+-+..... .+.++.++.|....+.+.|+..+++++.+||+|+.+..||+|.+.. .+|
T Consensus 145 ~~~v~~t~~~--------le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~-------------~i~ 203 (339)
T KOG0280|consen 145 ISGVYETEMV--------LEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKT-------------FIW 203 (339)
T ss_pred EEEEecceee--------eeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCcc-------------eee
Confidence 8855554321 2456688999999999999988889999999999999999995542 122
Q ss_pred ecccCceecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCC-CCCCccccCCCCCCCCccccccccccccCCc
Q 004477 199 DLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRR-MLPPLTSCQKRMSPPPCVNYFCPMHLSEHGR 277 (751)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 277 (751)
. ....|...|.+|.-+|.++.+|++|+.|-.|++||.| +++++..- .
T Consensus 204 ~----------n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kPl~~~----------------------~ 251 (339)
T KOG0280|consen 204 H----------NSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGKPLFKA----------------------K 251 (339)
T ss_pred e----------cceeeecceEEEecCCCCCceEEEeccccceeeeehhcccCccccC----------------------c
Confidence 1 1223778899999999889999999999999999999 44444221 1
Q ss_pred cccceEEEEEcCCCC-EEEEEeCCCcEEEEECCCCCcc-eeeeecCCCceeEEeCCCC
Q 004477 278 SSLHLTHVTFSPNGE-EVLLSYSGEHVYLMDVNHAGGR-AMRYTVGDASKIMSFTPTL 333 (751)
Q Consensus 278 ~~~~vt~v~fspdg~-~Ll~~s~d~~I~lwdl~~~~~~-~~~~~~~~~~~~~~~sp~~ 333 (751)
..+.|+.+.++|.-. .|++++.-+-.+|-+++..... ...+........+++..+-
T Consensus 252 v~GGVWRi~~~p~~~~~lL~~CMh~G~ki~~~~~~~~e~~~~~~s~~~hdSl~YG~DW 309 (339)
T KOG0280|consen 252 VGGGVWRIKHHPEIFHRLLAACMHNGAKILDSSDKVLEFQIVLPSDKIHDSLCYGGDW 309 (339)
T ss_pred cccceEEEEecchhhhHHHHHHHhcCceEEEecccccchheeeeccccccceeecccc
Confidence 123599999999543 4455555566777777765322 2233333344455555443
No 229
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.13 E-value=6.8e-09 Score=115.44 Aligned_cols=203 Identities=13% Similarity=0.093 Sum_probs=128.9
Q ss_pred ccEEeccCCCcEEEEEECCCCCEEEEEeCC---CcEEEEeCCCCeEEEEecccCCcceEEEEEecCCCCcEEE-EEECCC
Q 004477 42 QERELEGHQGCVNAISWNSKGSLLISGSDD---THINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVV-SGAGDA 117 (751)
Q Consensus 42 ~~~~L~gH~~~V~~l~~s~dg~~LaSgs~D---g~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~s~~~~l~-sgs~Dg 117 (751)
..+.|..+...+...+|+|||++||.++.+ ..|.+||+.+++... + ..+.+.+.+++|+|+ ++.|+ +.+.++
T Consensus 181 ~~~~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~-~-~~~~~~~~~~~~spD--g~~l~~~~~~~~ 256 (417)
T TIGR02800 181 NPQTITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREK-V-ASFPGMNGAPAFSPD--GSKLAVSLSKDG 256 (417)
T ss_pred CCEEeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEE-e-ecCCCCccceEECCC--CCEEEEEECCCC
Confidence 345666777789999999999999987654 479999998875543 2 345666788999999 66554 555554
Q ss_pred --cEEEEECCCCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEe-CCC--cEEEEecCCCCCCCCCCCCCCc
Q 004477 118 --EVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSAS-EDG--TLRQHDFRQGSSCPPAGSSHQE 192 (751)
Q Consensus 118 --~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s-~Dg--~I~iwDlr~~~~~~~~~~~~~~ 192 (751)
.|++||+.... ...+..+...+....|+|+ +..|+.++ .++ .|.++|+.+++..
T Consensus 257 ~~~i~~~d~~~~~-----------~~~l~~~~~~~~~~~~s~d-g~~l~~~s~~~g~~~iy~~d~~~~~~~--------- 315 (417)
T TIGR02800 257 NPDIYVMDLDGKQ-----------LTRLTNGPGIDTEPSWSPD-GKSIAFTSDRGGSPQIYMMDADGGEVR--------- 315 (417)
T ss_pred CccEEEEECCCCC-----------EEECCCCCCCCCCEEECCC-CCEEEEEECCCCCceEEEEECCCCCEE---------
Confidence 58888887532 3334445555567789994 45554444 444 4666676554310
Q ss_pred cceEEEecccCceecccCCCCCccceEEEEEeCCCCcEEEEEeCCC---eEEEEeCCCCCCccccCCCCCCCCccccccc
Q 004477 193 CRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDA---FARLYDRRMLPPLTSCQKRMSPPPCVNYFCP 269 (751)
Q Consensus 193 ~~~~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~---~IriwD~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (751)
. +.. ....+....|+|+ +++|+.++.++ .|.+||+.+.... . .
T Consensus 316 ---~-----------l~~---~~~~~~~~~~spd-g~~i~~~~~~~~~~~i~~~d~~~~~~~-~-------------l-- 361 (417)
T TIGR02800 316 ---R-----------LTF---RGGYNASPSWSPD-GDLIAFVHREGGGFNIAVMDLDGGGER-V-------------L-- 361 (417)
T ss_pred ---E-----------eec---CCCCccCeEECCC-CCEEEEEEccCCceEEEEEeCCCCCeE-E-------------c--
Confidence 0 100 1223556789995 67787777765 7888888763211 0 0
Q ss_pred cccccCCccccceEEEEEcCCCCEEEEEeCCC---cEEEEECCC
Q 004477 270 MHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGE---HVYLMDVNH 310 (751)
Q Consensus 270 ~~~~~~g~~~~~vt~v~fspdg~~Ll~~s~d~---~I~lwdl~~ 310 (751)
.... ......|+|||++|+..+.++ .+++++...
T Consensus 362 ---~~~~----~~~~p~~spdg~~l~~~~~~~~~~~l~~~~~~g 398 (417)
T TIGR02800 362 ---TDTG----LDESPSFAPNGRMILYATTRGGRGVLGLVSTDG 398 (417)
T ss_pred ---cCCC----CCCCceECCCCCEEEEEEeCCCcEEEEEEECCC
Confidence 0000 123457999999998877743 466666544
No 230
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.10 E-value=1.2e-09 Score=113.75 Aligned_cols=267 Identities=15% Similarity=0.116 Sum_probs=179.4
Q ss_pred EEeccCCCcEEEEEECC--CCCEEEEEeCCCcEEEEeCC-CCeEE-EEecccCCcceEEEEEecCCCCcEEEEEECCCcE
Q 004477 44 RELEGHQGCVNAISWNS--KGSLLISGSDDTHINVWSYS-SRKLL-HSIETGHSANVFCTKFVPETSDELVVSGAGDAEV 119 (751)
Q Consensus 44 ~~L~gH~~~V~~l~~s~--dg~~LaSgs~Dg~I~IWd~~-~~~~~-~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~Dg~V 119 (751)
.-..||...|..-+|-| +.+.|++++.||.|++=.+. ++.+. ......|.+.|.-++.-|++ ...|.|++.|+.|
T Consensus 179 ~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~s~i~~t~~~e~t~rl~~h~g~vhklav~p~s-p~~f~S~geD~~v 257 (559)
T KOG1334|consen 179 SFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVRVSEILETGYVENTKRLAPHEGPVHKLAVEPDS-PKPFLSCGEDAVV 257 (559)
T ss_pred ccccccccchhhhhccCCCCCcCceeccccCceeeeeeccccceecceecccccCccceeeecCCC-CCcccccccccce
Confidence 34468988888888988 45689999999999997754 34333 22236799999999999997 7889999999999
Q ss_pred EEEECCCCCCCCCCCCCCCCceeecccCC---ceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCCCCCCCCCCccceE
Q 004477 120 RLFNLSRFSGRGLDDNAITPSALYQCHTR---RVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNI 196 (751)
Q Consensus 120 ~vwd~~~~~~~~~~~~~~~~~~~~~~h~~---~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~~~~~~~~~~~~ 196 (751)
.-.|++..... .....-..+.. ....|+..|.+.+.|++++.|..+++||.|.-..-...+..+.-|...
T Consensus 258 ~~~Dlr~~~pa-------~~~~cr~~~~~~~v~L~~Ia~~P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~h 330 (559)
T KOG1334|consen 258 FHIDLRQDVPA-------EKFVCREADEKERVGLYTIAVDPRNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHH 330 (559)
T ss_pred eeeeeccCCcc-------ceeeeeccCCccceeeeeEecCCCCccccccCChhhhhhhhcccchhhccccchhhhcCCcc
Confidence 99999864221 11222222333 467899999888899999999999999998755321111111111111
Q ss_pred EEecccCceecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCccccCCCCCCCCccccccccccccCC
Q 004477 197 LLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHG 276 (751)
Q Consensus 197 l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 276 (751)
+. ......|++++|+.+ +.-++++-+|-.|+++...+..--.... ......+.+... .|
T Consensus 331 l~-------------~d~~v~ITgl~Ysh~-~sElLaSYnDe~IYLF~~~~~~G~~p~~-----~s~~~~~~k~vY--KG 389 (559)
T KOG1334|consen 331 LV-------------EDDPVNITGLVYSHD-GSELLASYNDEDIYLFNKSMGDGSEPDP-----SSPREQYVKRVY--KG 389 (559)
T ss_pred cc-------------ccCcccceeEEecCC-ccceeeeecccceEEeccccccCCCCCC-----Ccchhhccchhh--cc
Confidence 11 124567999999985 5566667788889999554432100000 000012222212 23
Q ss_pred cccc-ceEEEEE-cCCCCEEEEEeCCCcEEEEECCCCCcceeeeecCCCceeEEeCCCCCCcccC
Q 004477 277 RSSL-HLTHVTF-SPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVGDASKIMSFTPTLNGLELQ 339 (751)
Q Consensus 277 ~~~~-~vt~v~f-spdg~~Ll~~s~d~~I~lwdl~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~ 339 (751)
|.+. .|..+-| -|...|+++|+..|.|.||+-.++.....+....++++.+..+|-..-++..
T Consensus 390 HrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~eii~~MegDr~VVNCLEpHP~~PvLAsS 454 (559)
T KOG1334|consen 390 HRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTGEIIRFMEGDRHVVNCLEPHPHLPVLASS 454 (559)
T ss_pred cccccccceeeeccCccceEEecCccceEEEEecchhHHHHHhhcccceEeccCCCCCCchhhcc
Confidence 4321 3666654 5788999999999999999999987777777777788888888877666544
No 231
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.09 E-value=2.7e-09 Score=104.73 Aligned_cols=112 Identities=10% Similarity=0.259 Sum_probs=86.1
Q ss_pred CCCcEEEEEECCCCCEEEEE--eCCCcEEEEeCCCCeEEEEecccCCcceEEEEEecCCCCcEEEEEECC---CcEEEEE
Q 004477 49 HQGCVNAISWNSKGSLLISG--SDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGD---AEVRLFN 123 (751)
Q Consensus 49 H~~~V~~l~~s~dg~~LaSg--s~Dg~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~D---g~V~vwd 123 (751)
..+.|.+++|+|+|+.||.. ..++.|.|||++ ++.+..+ +...++.|.|+|+ |++|++|+.+ |.|.+||
T Consensus 58 ~~~~I~~~~WsP~g~~favi~g~~~~~v~lyd~~-~~~i~~~---~~~~~n~i~wsP~--G~~l~~~g~~n~~G~l~~wd 131 (194)
T PF08662_consen 58 KEGPIHDVAWSPNGNEFAVIYGSMPAKVTLYDVK-GKKIFSF---GTQPRNTISWSPD--GRFLVLAGFGNLNGDLEFWD 131 (194)
T ss_pred CCCceEEEEECcCCCEEEEEEccCCcccEEEcCc-ccEeEee---cCCCceEEEECCC--CCEEEEEEccCCCcEEEEEE
Confidence 34579999999999987654 467899999996 6677766 3567889999999 8999998754 5699999
Q ss_pred CCCCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeC------CCcEEEEecCC
Q 004477 124 LSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASE------DGTLRQHDFRQ 179 (751)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~------Dg~I~iwDlr~ 179 (751)
+... +.+.... ...+..++|+| ++++|++++. |..++||++..
T Consensus 132 ~~~~----------~~i~~~~--~~~~t~~~WsP-dGr~~~ta~t~~r~~~dng~~Iw~~~G 180 (194)
T PF08662_consen 132 VRKK----------KKISTFE--HSDATDVEWSP-DGRYLATATTSPRLRVDNGFKIWSFQG 180 (194)
T ss_pred CCCC----------EEeeccc--cCcEEEEEEcC-CCCEEEEEEeccceeccccEEEEEecC
Confidence 9853 3344433 33478999999 6677777653 78899999854
No 232
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.09 E-value=1.3e-08 Score=113.63 Aligned_cols=203 Identities=15% Similarity=0.150 Sum_probs=130.3
Q ss_pred CcEEEEeCCCCeEEEEecccCCcceEEEEEecCCCCcEEEEEEC---CCcEEEEECCCCCCCCCCCCCCCCceeecccCC
Q 004477 72 THINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAG---DAEVRLFNLSRFSGRGLDDNAITPSALYQCHTR 148 (751)
Q Consensus 72 g~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~---Dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~ 148 (751)
..|.+||.. +.....+ +.|...+.+.+|+|+ |+.|+..+. +..|.+||+.++. ...+..+.+
T Consensus 182 ~~l~~~d~d-g~~~~~l-t~~~~~v~~p~wSpD--G~~lay~s~~~g~~~i~~~dl~~g~-----------~~~l~~~~g 246 (435)
T PRK05137 182 KRLAIMDQD-GANVRYL-TDGSSLVLTPRFSPN--RQEITYMSYANGRPRVYLLDLETGQ-----------RELVGNFPG 246 (435)
T ss_pred eEEEEECCC-CCCcEEE-ecCCCCeEeeEECCC--CCEEEEEEecCCCCEEEEEECCCCc-----------EEEeecCCC
Confidence 378889975 4444555 678889999999999 788877653 4689999998642 234445666
Q ss_pred ceeEEEEecCCCCEEEEEeCCCc--EEEEecCCCCCCCCCCCCCCccceEEEecccCceecccCCCCCccceEEEEEeCC
Q 004477 149 RVKKLAVEVGNPHVVWSASEDGT--LRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISST 226 (751)
Q Consensus 149 ~V~~l~~sp~~~~~l~s~s~Dg~--I~iwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~ 226 (751)
.+...+|+|++..++++.+.+|. |.+||+.++... .+.. +........|+|+
T Consensus 247 ~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~~-----------------------~Lt~---~~~~~~~~~~spD 300 (435)
T PRK05137 247 MTFAPRFSPDGRKVVMSLSQGGNTDIYTMDLRSGTTT-----------------------RLTD---SPAIDTSPSYSPD 300 (435)
T ss_pred cccCcEECCCCCEEEEEEecCCCceEEEEECCCCceE-----------------------EccC---CCCccCceeEcCC
Confidence 77889999965556667777776 666687765421 0111 1223456799995
Q ss_pred CCcEEEEEeC-C--CeEEEEeCCCCCCccccCCCCCCCCccccccccccccCCccccceEEEEEcCCCCEEEEEeCC---
Q 004477 227 RPHLLLVGGS-D--AFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSG--- 300 (751)
Q Consensus 227 ~~~~l~sgs~-D--~~IriwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~vt~v~fspdg~~Ll~~s~d--- 300 (751)
++.|+..+. + ..|.+||+...... .+. . . ...+....|+|||++|+....+
T Consensus 301 -G~~i~f~s~~~g~~~Iy~~d~~g~~~~--------------~lt------~-~-~~~~~~~~~SpdG~~ia~~~~~~~~ 357 (435)
T PRK05137 301 -GSQIVFESDRSGSPQLYVMNADGSNPR--------------RIS------F-G-GGRYSTPVWSPRGDLIAFTKQGGGQ 357 (435)
T ss_pred -CCEEEEEECCCCCCeEEEEECCCCCeE--------------Eee------c-C-CCcccCeEECCCCCEEEEEEcCCCc
Confidence 676666553 3 36778887643211 010 0 0 1125568899999999877653
Q ss_pred CcEEEEECCCCCcceeeeecCCCceeEEeCCCCCCcccCC
Q 004477 301 EHVYLMDVNHAGGRAMRYTVGDASKIMSFTPTLNGLELQP 340 (751)
Q Consensus 301 ~~I~lwdl~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~ 340 (751)
..|++||+.++.. . ............|+|+.+.+.+..
T Consensus 358 ~~i~~~d~~~~~~-~-~lt~~~~~~~p~~spDG~~i~~~~ 395 (435)
T PRK05137 358 FSIGVMKPDGSGE-R-ILTSGFLVEGPTWAPNGRVIMFFR 395 (435)
T ss_pred eEEEEEECCCCce-E-eccCCCCCCCCeECCCCCEEEEEE
Confidence 3688999866432 2 222233456778899887776653
No 233
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.07 E-value=5.6e-09 Score=106.31 Aligned_cols=166 Identities=15% Similarity=0.239 Sum_probs=130.5
Q ss_pred CcEEEEEECCC-CCEEEEEeCC--CcEEEEeCCCCeEEEEecccC--------CcceEEEEEecCCCCcEEEEEECCCcE
Q 004477 51 GCVNAISWNSK-GSLLISGSDD--THINVWSYSSRKLLHSIETGH--------SANVFCTKFVPETSDELVVSGAGDAEV 119 (751)
Q Consensus 51 ~~V~~l~~s~d-g~~LaSgs~D--g~I~IWd~~~~~~~~~l~~~h--------~~~V~~v~fsp~s~~~~l~sgs~Dg~V 119 (751)
..+..|.-++. ..++|+|+.. ..+.|||++..+++..-+..- .-.++++.|.|......||++..-+.|
T Consensus 149 ~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~qiw~aKNvpnD~L~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqv 228 (412)
T KOG3881|consen 149 PGLYDVRQTDTDPYIVATGGKENINELKIWDLEQSKQIWSAKNVPNDRLGLRVPVWITDIRFLEGSPNYKFATITRYHQV 228 (412)
T ss_pred CceeeeccCCCCCceEecCchhcccceeeeecccceeeeeccCCCCccccceeeeeeccceecCCCCCceEEEEecceeE
Confidence 34555666654 3466779988 889999999876665542211 234678999988656899999999999
Q ss_pred EEEECCCCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCCCCCCCCCCccceEEEe
Q 004477 120 RLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLD 199 (751)
Q Consensus 120 ~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~~~~~~~~~~~~l~~ 199 (751)
++||...+. +|+..+.--..+|.++...| +++++.+|..-|.+..||+|.+...
T Consensus 229 R~YDt~~qR---------RPV~~fd~~E~~is~~~l~p-~gn~Iy~gn~~g~l~~FD~r~~kl~---------------- 282 (412)
T KOG3881|consen 229 RLYDTRHQR---------RPVAQFDFLENPISSTGLTP-SGNFIYTGNTKGQLAKFDLRGGKLL---------------- 282 (412)
T ss_pred EEecCcccC---------cceeEeccccCcceeeeecC-CCcEEEEecccchhheecccCceee----------------
Confidence 999999532 67888888899999999999 7799999999999999999998643
Q ss_pred cccCceecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCc
Q 004477 200 LRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPL 251 (751)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~ 251 (751)
.....+..+.+.++..+|. ..++++++-|.+|||+|+.+.+.+
T Consensus 283 --------g~~~kg~tGsirsih~hp~-~~~las~GLDRyvRIhD~ktrkll 325 (412)
T KOG3881|consen 283 --------GCGLKGITGSIRSIHCHPT-HPVLASCGLDRYVRIHDIKTRKLL 325 (412)
T ss_pred --------ccccCCccCCcceEEEcCC-CceEEeeccceeEEEeecccchhh
Confidence 1223345678999999994 689999999999999999986544
No 234
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.06 E-value=2.5e-08 Score=111.31 Aligned_cols=203 Identities=12% Similarity=0.080 Sum_probs=125.3
Q ss_pred cEEeccCCCcEEEEEECCCCCEEEEEeCC---CcEEEEeCCCCeEEEEecccCCcceEEEEEecCCCCcEEE-EEECCC-
Q 004477 43 ERELEGHQGCVNAISWNSKGSLLISGSDD---THINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVV-SGAGDA- 117 (751)
Q Consensus 43 ~~~L~gH~~~V~~l~~s~dg~~LaSgs~D---g~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~s~~~~l~-sgs~Dg- 117 (751)
.+.+..|...+....|+|||+.||..+.+ ..|.+||+.+++... + ....+.+....|+|+ |+.|+ +.+.++
T Consensus 191 ~~~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~-l-~~~~g~~~~~~~SpD--G~~la~~~~~~g~ 266 (430)
T PRK00178 191 AVTLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQ-I-TNFEGLNGAPAWSPD--GSKLAFVLSKDGN 266 (430)
T ss_pred ceEEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEE-c-cCCCCCcCCeEECCC--CCEEEEEEccCCC
Confidence 45566677889999999999999877644 368999998876533 3 233455667999999 67665 555555
Q ss_pred -cEEEEECCCCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCC--cEEEEecCCCCCCCCCCCCCCccc
Q 004477 118 -EVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDG--TLRQHDFRQGSSCPPAGSSHQECR 194 (751)
Q Consensus 118 -~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg--~I~iwDlr~~~~~~~~~~~~~~~~ 194 (751)
.|.+||+..+. ...+..+...+....|+|++..++++...+| .|.++|+.+++..
T Consensus 267 ~~Iy~~d~~~~~-----------~~~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~----------- 324 (430)
T PRK00178 267 PEIYVMDLASRQ-----------LSRVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAE----------- 324 (430)
T ss_pred ceEEEEECCCCC-----------eEEcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEE-----------
Confidence 57788887532 3334445556677899995544444444444 4666666554311
Q ss_pred eEEEecccCceecccCCCCCccceEEEEEeCCCCcEEEEEeC-CC--eEEEEeCCCCCCccccCCCCCCCCccccccccc
Q 004477 195 NILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGS-DA--FARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMH 271 (751)
Q Consensus 195 ~~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~-D~--~IriwD~~~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (751)
.+ ... ........|+|+ +++|+..+. ++ .|.+||+.+++.. . +..
T Consensus 325 -~l-----------t~~---~~~~~~~~~Spd-g~~i~~~~~~~~~~~l~~~dl~tg~~~-~-------------lt~-- 372 (430)
T PRK00178 325 -RV-----------TFV---GNYNARPRLSAD-GKTLVMVHRQDGNFHVAAQDLQRGSVR-I-------------LTD-- 372 (430)
T ss_pred -Ee-----------ecC---CCCccceEECCC-CCEEEEEEccCCceEEEEEECCCCCEE-E-------------ccC--
Confidence 00 000 011234679995 566665554 33 5788888765321 0 000
Q ss_pred cccCCccccceEEEEEcCCCCEEEEEeCC---CcEEEEECCC
Q 004477 272 LSEHGRSSLHLTHVTFSPNGEEVLLSYSG---EHVYLMDVNH 310 (751)
Q Consensus 272 ~~~~g~~~~~vt~v~fspdg~~Ll~~s~d---~~I~lwdl~~ 310 (751)
.. ......|+|||++|+..+.+ ..|++++++.
T Consensus 373 ----~~---~~~~p~~spdg~~i~~~~~~~g~~~l~~~~~~g 407 (430)
T PRK00178 373 ----TS---LDESPSVAPNGTMLIYATRQQGRGVLMLVSING 407 (430)
T ss_pred ----CC---CCCCceECCCCCEEEEEEecCCceEEEEEECCC
Confidence 00 01235799999999877653 4578888865
No 235
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.06 E-value=7.5e-09 Score=115.37 Aligned_cols=203 Identities=11% Similarity=0.075 Sum_probs=126.3
Q ss_pred CcEEEEeCCCCeEEEEecccCCcceEEEEEecCCCCcEEEEEEC---CCcEEEEECCCCCCCCCCCCCCCCceeecccCC
Q 004477 72 THINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAG---DAEVRLFNLSRFSGRGLDDNAITPSALYQCHTR 148 (751)
Q Consensus 72 g~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~---Dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~ 148 (751)
..|.|||.. +.....+ ..|...+.+.+|+|+ ++.|+.++. +..|.+||+..+. ...+..+.+
T Consensus 184 ~~l~i~D~~-g~~~~~l-t~~~~~v~~p~wSpD--g~~la~~s~~~~~~~l~~~dl~~g~-----------~~~l~~~~g 248 (433)
T PRK04922 184 YALQVADSD-GYNPQTI-LRSAEPILSPAWSPD--GKKLAYVSFERGRSAIYVQDLATGQ-----------RELVASFRG 248 (433)
T ss_pred EEEEEECCC-CCCceEe-ecCCCccccccCCCC--CCEEEEEecCCCCcEEEEEECCCCC-----------EEEeccCCC
Confidence 468999985 4444455 567788999999999 788887764 3469999997542 222333344
Q ss_pred ceeEEEEecCCCCEEEEEeCCC--cEEEEecCCCCCCCCCCCCCCccceEEEecccCceecccCCCCCccceEEEEEeCC
Q 004477 149 RVKKLAVEVGNPHVVWSASEDG--TLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISST 226 (751)
Q Consensus 149 ~V~~l~~sp~~~~~l~s~s~Dg--~I~iwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~ 226 (751)
.+...+|+|++..++++.+.+| .|.+||+.+++.. .+. .+.......+|+|+
T Consensus 249 ~~~~~~~SpDG~~l~~~~s~~g~~~Iy~~d~~~g~~~-----------------------~lt---~~~~~~~~~~~spD 302 (433)
T PRK04922 249 INGAPSFSPDGRRLALTLSRDGNPEIYVMDLGSRQLT-----------------------RLT---NHFGIDTEPTWAPD 302 (433)
T ss_pred CccCceECCCCCEEEEEEeCCCCceEEEEECCCCCeE-----------------------ECc---cCCCCccceEECCC
Confidence 4567899996555666667666 4888898776421 010 01122356789995
Q ss_pred CCcEEEEEe-CCCe--EEEEeCCCCCCccccCCCCCCCCccccccccccccCCccccceEEEEEcCCCCEEEEEeCCC--
Q 004477 227 RPHLLLVGG-SDAF--ARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGE-- 301 (751)
Q Consensus 227 ~~~~l~sgs-~D~~--IriwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~vt~v~fspdg~~Ll~~s~d~-- 301 (751)
++.|+.++ .++. |.++|+...+.. .. ...+. ....++|+|||++|+..+.++
T Consensus 303 -G~~l~f~sd~~g~~~iy~~dl~~g~~~--------------~l-----t~~g~---~~~~~~~SpDG~~Ia~~~~~~~~ 359 (433)
T PRK04922 303 -GKSIYFTSDRGGRPQIYRVAASGGSAE--------------RL-----TFQGN---YNARASVSPDGKKIAMVHGSGGQ 359 (433)
T ss_pred -CCEEEEEECCCCCceEEEEECCCCCeE--------------Ee-----ecCCC---CccCEEECCCCCEEEEEECCCCc
Confidence 66666655 3444 556666543211 00 00111 134689999999998766533
Q ss_pred -cEEEEECCCCCcceeeeecCCCceeEEeCCCCCCcccCC
Q 004477 302 -HVYLMDVNHAGGRAMRYTVGDASKIMSFTPTLNGLELQP 340 (751)
Q Consensus 302 -~I~lwdl~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~ 340 (751)
.|++||+.++... ....+.......|+|+.+.+.+..
T Consensus 360 ~~I~v~d~~~g~~~--~Lt~~~~~~~p~~spdG~~i~~~s 397 (433)
T PRK04922 360 YRIAVMDLSTGSVR--TLTPGSLDESPSFAPNGSMVLYAT 397 (433)
T ss_pred eeEEEEECCCCCeE--ECCCCCCCCCceECCCCCEEEEEE
Confidence 6999999875433 222333445568888877766543
No 236
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.04 E-value=6.8e-09 Score=117.55 Aligned_cols=191 Identities=10% Similarity=0.131 Sum_probs=146.2
Q ss_pred CCCEEEEEeCCCcEEEEeCCCCeEEEEecccCCcceE---EEEEecCCCCcEEEEEECCCcEEEEECCCCCCCCCCCCCC
Q 004477 61 KGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVF---CTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAI 137 (751)
Q Consensus 61 dg~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~V~---~v~fsp~s~~~~l~sgs~Dg~V~vwd~~~~~~~~~~~~~~ 137 (751)
....++.+..+..+.|||...+.....+...-..... -+-++++ .-++++|+.-+.|.+|+....
T Consensus 98 e~k~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~~l~~~~~~g~s~~--~~~i~~gsv~~~iivW~~~~d---------- 165 (967)
T KOG0974|consen 98 ENKKIALVTSRNSLLIRDSKNSSVLSKIQSDERCTLYSSLIIGDSAE--ELYIASGSVFGEIIVWKPHED---------- 165 (967)
T ss_pred hcceEEEEEcCceEEEEecccCceehhcCCCceEEEEeEEEEeccCc--EEEEEeccccccEEEEecccc----------
Confidence 4567888888999999999887776665211111111 2234555 468999999999999999832
Q ss_pred CCceeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCCCCCCCCCCccceEEEecccCceecccCCCCCccc
Q 004477 138 TPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLS 217 (751)
Q Consensus 138 ~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 217 (751)
+....+.+|.+.|.++.|+- ++++++|.|+|.++|+|++.+.+... ...-+|...
T Consensus 166 n~p~~l~GHeG~iF~i~~s~-dg~~i~s~SdDRsiRlW~i~s~~~~~------------------------~~~fgHsaR 220 (967)
T KOG0974|consen 166 NKPIRLKGHEGSIFSIVTSL-DGRYIASVSDDRSIRLWPIDSREVLG------------------------CTGFGHSAR 220 (967)
T ss_pred CCcceecccCCceEEEEEcc-CCcEEEEEecCcceeeeecccccccC------------------------cccccccce
Confidence 22236889999999999998 78999999999999999999987442 112247889
Q ss_pred eEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCccccCCCCCCCCccccccccccccCCccccceEEEEEcCCCCEEEEE
Q 004477 218 LKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLS 297 (751)
Q Consensus 218 v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~vt~v~fspdg~~Ll~~ 297 (751)
|..+.|.|. .+++++.|.+.++|+..-.. +..| .+|....|..++..++.-.++++
T Consensus 221 vw~~~~~~n---~i~t~gedctcrvW~~~~~~--------------l~~y-------~~h~g~~iw~~~~~~~~~~~vT~ 276 (967)
T KOG0974|consen 221 VWACCFLPN---RIITVGEDCTCRVWGVNGTQ--------------LEVY-------DEHSGKGIWKIAVPIGVIIKVTG 276 (967)
T ss_pred eEEEEeccc---eeEEeccceEEEEEecccce--------------ehhh-------hhhhhcceeEEEEcCCceEEEee
Confidence 999999984 99999999999999654321 1111 34555579999999999999999
Q ss_pred eCCCcEEEEECCCCC
Q 004477 298 YSGEHVYLMDVNHAG 312 (751)
Q Consensus 298 s~d~~I~lwdl~~~~ 312 (751)
+.|+.+++||+.+..
T Consensus 277 g~Ds~lk~~~l~~r~ 291 (967)
T KOG0974|consen 277 GNDSTLKLWDLNGRG 291 (967)
T ss_pred ccCcchhhhhhhccc
Confidence 999999999998743
No 237
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.03 E-value=2.2e-09 Score=121.45 Aligned_cols=151 Identities=18% Similarity=0.180 Sum_probs=118.1
Q ss_pred EECCCCCEEEEEeCCCcEEEEeCCCCeEEEEecccCCcceEEEEEecCCCCcEEEEEECCCcEEEEECCCCCCCCCCCCC
Q 004477 57 SWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNA 136 (751)
Q Consensus 57 ~~s~dg~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~Dg~V~vwd~~~~~~~~~~~~~ 136 (751)
-++++.-++++|+.-+.|++|+.........+ .||.+.|+++.|+-+ |.+++|+|.|.++|+|++.+..
T Consensus 140 g~s~~~~~i~~gsv~~~iivW~~~~dn~p~~l-~GHeG~iF~i~~s~d--g~~i~s~SdDRsiRlW~i~s~~-------- 208 (967)
T KOG0974|consen 140 GDSAEELYIASGSVFGEIIVWKPHEDNKPIRL-KGHEGSIFSIVTSLD--GRYIASVSDDRSIRLWPIDSRE-------- 208 (967)
T ss_pred eccCcEEEEEeccccccEEEEeccccCCccee-cccCCceEEEEEccC--CcEEEEEecCcceeeeeccccc--------
Confidence 34556668999999999999998733333335 899999999999999 8999999999999999999753
Q ss_pred CCCceeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCCCCCCCCCCccceEEEecccCceecccCCCCCcc
Q 004477 137 ITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTL 216 (751)
Q Consensus 137 ~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 216 (751)
....+.-+|+.+|..++|.| + .++|+++|-+.++|+....+.. .+.-+ ...
T Consensus 209 -~~~~~~fgHsaRvw~~~~~~-n--~i~t~gedctcrvW~~~~~~l~-------------~y~~h------------~g~ 259 (967)
T KOG0974|consen 209 -VLGCTGFGHSARVWACCFLP-N--RIITVGEDCTCRVWGVNGTQLE-------------VYDEH------------SGK 259 (967)
T ss_pred -ccCcccccccceeEEEEecc-c--eeEEeccceEEEEEecccceeh-------------hhhhh------------hhc
Confidence 22346678999999999998 4 8899999999999965443210 00000 124
Q ss_pred ceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCC
Q 004477 217 SLKSCDISSTRPHLLLVGGSDAFARLYDRRML 248 (751)
Q Consensus 217 ~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~ 248 (751)
.+..++..+ +...+++++.|+.+++||+...
T Consensus 260 ~iw~~~~~~-~~~~~vT~g~Ds~lk~~~l~~r 290 (967)
T KOG0974|consen 260 GIWKIAVPI-GVIIKVTGGNDSTLKLWDLNGR 290 (967)
T ss_pred ceeEEEEcC-CceEEEeeccCcchhhhhhhcc
Confidence 578888888 4789999999999999998653
No 238
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.02 E-value=3.7e-08 Score=109.95 Aligned_cols=221 Identities=12% Similarity=0.092 Sum_probs=124.8
Q ss_pred EeccCCCcEEEEEECCCCCEEEEEeCC-C--cEEEEeCCCCeEEEEecccCCcceEEEEEecCCCCcEEE-EEECCCc--
Q 004477 45 ELEGHQGCVNAISWNSKGSLLISGSDD-T--HINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVV-SGAGDAE-- 118 (751)
Q Consensus 45 ~L~gH~~~V~~l~~s~dg~~LaSgs~D-g--~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~s~~~~l~-sgs~Dg~-- 118 (751)
.+..+...+....|+|||+.|+..+.+ + .|.+||+.+++... + ....+.....+|+|+ |+.|+ +.+.++.
T Consensus 212 ~l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~-l-t~~~g~~~~~~wSPD--G~~La~~~~~~g~~~ 287 (448)
T PRK04792 212 MLLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREK-V-TSFPGINGAPRFSPD--GKKLALVLSKDGQPE 287 (448)
T ss_pred EeecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEE-e-cCCCCCcCCeeECCC--CCEEEEEEeCCCCeE
Confidence 344456677899999999999877543 2 58888988776432 2 222344557899999 66555 5666775
Q ss_pred EEEEECCCCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCCc--EEEEecCCCCCCCCCCCCCCccceE
Q 004477 119 VRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGT--LRQHDFRQGSSCPPAGSSHQECRNI 196 (751)
Q Consensus 119 V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~--I~iwDlr~~~~~~~~~~~~~~~~~~ 196 (751)
|.++|+..+. ...+..+...+...+|+|++..++++...++. |.++|+.+++..
T Consensus 288 Iy~~dl~tg~-----------~~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~------------- 343 (448)
T PRK04792 288 IYVVDIATKA-----------LTRITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVS------------- 343 (448)
T ss_pred EEEEECCCCC-----------eEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEE-------------
Confidence 6666776431 33444455566788999955445445444554 555566554311
Q ss_pred EEecccCceecccCCCCCccceEEEEEeCCCCcEEEEEeC-CC--eEEEEeCCCCCCccccCCCCCCCCccccccccccc
Q 004477 197 LLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGS-DA--FARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLS 273 (751)
Q Consensus 197 l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~-D~--~IriwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (751)
.+.. ........+|+|+ +++|+..+. ++ .|.++|+.+++.. . ...
T Consensus 344 ----------~Lt~---~g~~~~~~~~SpD-G~~l~~~~~~~g~~~I~~~dl~~g~~~-~-------------lt~---- 391 (448)
T PRK04792 344 ----------RLTF---EGEQNLGGSITPD-GRSMIMVNRTNGKFNIARQDLETGAMQ-V-------------LTS---- 391 (448)
T ss_pred ----------EEec---CCCCCcCeeECCC-CCEEEEEEecCCceEEEEEECCCCCeE-E-------------ccC----
Confidence 0100 0011234589996 555555443 44 3455676654311 0 000
Q ss_pred cCCccccceEEEEEcCCCCEEEEEeCC-C--cEEEEECCCCCcceeeeecCCCceeEEeCC
Q 004477 274 EHGRSSLHLTHVTFSPNGEEVLLSYSG-E--HVYLMDVNHAGGRAMRYTVGDASKIMSFTP 331 (751)
Q Consensus 274 ~~g~~~~~vt~v~fspdg~~Ll~~s~d-~--~I~lwdl~~~~~~~~~~~~~~~~~~~~~sp 331 (751)
.. ......|+|||++|+..+.+ + .+++++.+. ................+|+|
T Consensus 392 --~~---~d~~ps~spdG~~I~~~~~~~g~~~l~~~~~~G-~~~~~l~~~~g~~~~p~Wsp 446 (448)
T PRK04792 392 --TR---LDESPSVAPNGTMVIYSTTYQGKQVLAAVSIDG-RFKARLPAGQGEVKSPAWSP 446 (448)
T ss_pred --CC---CCCCceECCCCCEEEEEEecCCceEEEEEECCC-CceEECcCCCCCcCCCccCC
Confidence 00 01234799999998876653 3 478888754 32222222233344455555
No 239
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.02 E-value=1.7e-08 Score=100.39 Aligned_cols=270 Identities=14% Similarity=0.153 Sum_probs=165.7
Q ss_pred CcEEEEEECCCCCEE-EEEeCCCcEEEEeCCCCeEEEEecccCCcceEEEEEecCCCCcEEEEEECCCcEEEEECCCCCC
Q 004477 51 GCVNAISWNSKGSLL-ISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSG 129 (751)
Q Consensus 51 ~~V~~l~~s~dg~~L-aSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~Dg~V~vwd~~~~~~ 129 (751)
+.|.-+.|..|..++ .....|+.|.+|++....-...+ .....++.++.|+|++ ..+|.+...|-.|.||.+.+..
T Consensus 49 dki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew~ckI-deg~agls~~~WSPdg-rhiL~tseF~lriTVWSL~t~~- 125 (447)
T KOG4497|consen 49 DKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPEWYCKI-DEGQAGLSSISWSPDG-RHILLTSEFDLRITVWSLNTQK- 125 (447)
T ss_pred HHhhheeeeccceeeeeeeeccceEEEEEeecceeEEEe-ccCCCcceeeeECCCc-ceEeeeecceeEEEEEEeccce-
Confidence 467788999887654 45678999999999988888888 5667889999999993 2667788889999999998642
Q ss_pred CCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCCc--------------EEEEecCCCCCCCCCCCCCCccce
Q 004477 130 RGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGT--------------LRQHDFRQGSSCPPAGSSHQECRN 195 (751)
Q Consensus 130 ~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~--------------I~iwDlr~~~~~~~~~~~~~~~~~ 195 (751)
...+.-.+..++.++|+| ++++.+.++.-.. ++-+++.+........ ....+..
T Consensus 126 ----------~~~~~~pK~~~kg~~f~~-dg~f~ai~sRrDCkdyv~i~~c~~W~ll~~f~~dT~DltgieW-sPdg~~l 193 (447)
T KOG4497|consen 126 ----------GYLLPHPKTNVKGYAFHP-DGQFCAILSRRDCKDYVQISSCKAWILLKEFKLDTIDLTGIEW-SPDGNWL 193 (447)
T ss_pred ----------eEEecccccCceeEEECC-CCceeeeeecccHHHHHHHHhhHHHHHHHhcCCCcccccCceE-CCCCcEE
Confidence 223333345578899999 6677666654211 1111222211110000 1122223
Q ss_pred EEEecccCceecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCccccCCCCC----------------
Q 004477 196 ILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMS---------------- 259 (751)
Q Consensus 196 ~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~~~~~~~~~---------------- 259 (751)
.+|+.--..+.. .-.....+..++|+|. +.+|++|+.|+.+||.+--+-++..++.....
T Consensus 194 aVwd~~Leykv~---aYe~~lG~k~v~wsP~-~qflavGsyD~~lrvlnh~tWk~f~eflhl~s~~dp~~~~~~ke~~~~ 269 (447)
T KOG4497|consen 194 AVWDNVLEYKVY---AYERGLGLKFVEWSPC-NQFLAVGSYDQMLRVLNHFTWKPFGEFLHLCSYHDPTLHLLEKETFSI 269 (447)
T ss_pred EEecchhhheee---eeeeccceeEEEeccc-cceEEeeccchhhhhhceeeeeehhhhccchhccCchhhhhhhhhcch
Confidence 333311110000 0112357889999994 79999999999999876555443322211000
Q ss_pred ---CCCcc----------------------------ccccccccccCCccccceEEEEEcCCCCEEEEEeC--CCcEEEE
Q 004477 260 ---PPPCV----------------------------NYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYS--GEHVYLM 306 (751)
Q Consensus 260 ---~~~~~----------------------------~~~~~~~~~~~g~~~~~vt~v~fspdg~~Ll~~s~--d~~I~lw 306 (751)
.-.|+ ....|..- .......+--++||+|..++++-.. -+.+.||
T Consensus 270 ~ql~~~cLsf~p~~~~a~~~~~se~~YE~~~~pv~~~~lkp~tD--~pnPk~g~g~lafs~Ds~y~aTrnd~~PnalW~W 347 (447)
T KOG4497|consen 270 VQLLHHCLSFTPTDLEAHIWEESETIYEQQMTPVKVHKLKPPTD--FPNPKCGAGKLAFSCDSTYAATRNDKYPNALWLW 347 (447)
T ss_pred hhhcccccccCCCccccCccccchhhhhhhhcceeeecccCCCC--CCCcccccceeeecCCceEEeeecCCCCceEEEE
Confidence 00011 11111110 1112234778999999999988655 5799999
Q ss_pred ECCCCCcceeeeecCCCceeEEeCCCCCCcccCCCc
Q 004477 307 DVNHAGGRAMRYTVGDASKIMSFTPTLNGLELQPPI 342 (751)
Q Consensus 307 dl~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~~~ 342 (751)
|+++.+ ........++++.+.|.|....+..-...
T Consensus 348 dlq~l~-l~avLiQk~piraf~WdP~~prL~vctg~ 382 (447)
T KOG4497|consen 348 DLQNLK-LHAVLIQKHPIRAFEWDPGRPRLVVCTGK 382 (447)
T ss_pred echhhh-hhhhhhhccceeEEEeCCCCceEEEEcCC
Confidence 999954 33344456788999999987776554433
No 240
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=99.00 E-value=7.7e-09 Score=101.63 Aligned_cols=207 Identities=14% Similarity=0.036 Sum_probs=142.5
Q ss_pred EEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEE--EecccCCcceEEEEEecCCCCcEEEEEECCCcEEEEECCCCCCC
Q 004477 53 VNAISWNSKGSLLISGSDDTHINVWSYSSRKLLH--SIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGR 130 (751)
Q Consensus 53 V~~l~~s~dg~~LaSgs~Dg~I~IWd~~~~~~~~--~l~~~h~~~V~~v~fsp~s~~~~l~sgs~Dg~V~vwd~~~~~~~ 130 (751)
-.++.|++.|..++++-.+|.+.+-+........ .. ++|.-.++-++|+-.. .+++.+|+.|+.+..||++.+. .
T Consensus 124 ~lslD~~~~~~~i~vs~s~G~~~~v~~t~~~le~vq~w-k~He~E~Wta~f~~~~-pnlvytGgDD~~l~~~D~R~p~-~ 200 (339)
T KOG0280|consen 124 ALSLDISTSGTKIFVSDSRGSISGVYETEMVLEKVQTW-KVHEFEAWTAKFSDKE-PNLVYTGGDDGSLSCWDIRIPK-T 200 (339)
T ss_pred eeEEEeeccCceEEEEcCCCcEEEEecceeeeeecccc-cccceeeeeeecccCC-CceEEecCCCceEEEEEecCCc-c
Confidence 4578899999999999999999965544443332 45 8999999999999875 6899999999999999999532 1
Q ss_pred CCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCCCCCCCCCCccceEEEecccCceecccC
Q 004477 131 GLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLAD 210 (751)
Q Consensus 131 ~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 210 (751)
. .-+..+-|...|.+|.-+|..+.++++|+.|-.|++||+|.......
T Consensus 201 ~-------i~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kPl~------------------------- 248 (339)
T KOG0280|consen 201 F-------IWHNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGKPLF------------------------- 248 (339)
T ss_pred e-------eeecceeeecceEEEecCCCCCceEEEeccccceeeeehhcccCccc-------------------------
Confidence 1 12225568999999999988899999999999999999996432200
Q ss_pred CCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCccccCCCCCCCCccccccccccccCCccccceEEEEEcCC
Q 004477 211 PPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPN 290 (751)
Q Consensus 211 ~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~vt~v~fspd 290 (751)
.....+.|..+..+|.....++.++..+-.+|-+....... +...+.....|.+ -+..-.|...
T Consensus 249 ~~~v~GGVWRi~~~p~~~~~lL~~CMh~G~ki~~~~~~~~e---------------~~~~~~s~~~hdS-l~YG~DWd~~ 312 (339)
T KOG0280|consen 249 KAKVGGGVWRIKHHPEIFHRLLAACMHNGAKILDSSDKVLE---------------FQIVLPSDKIHDS-LCYGGDWDSK 312 (339)
T ss_pred cCccccceEEEEecchhhhHHHHHHHhcCceEEEecccccc---------------hheeeeccccccc-eeeccccccc
Confidence 01123678889999976666777777777788777653211 1111111123333 2445555444
Q ss_pred CCEEEEEeC-CCcEE-EEECCC
Q 004477 291 GEEVLLSYS-GEHVY-LMDVNH 310 (751)
Q Consensus 291 g~~Ll~~s~-d~~I~-lwdl~~ 310 (751)
...|++++. |+.++ +|-.-+
T Consensus 313 ~~~lATCsFYDk~~~~~Wl~~t 334 (339)
T KOG0280|consen 313 DSFLATCSFYDKKIRQLWLHIT 334 (339)
T ss_pred cceeeeeeccccceeeeeeecc
Confidence 456777653 77755 775444
No 241
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.00 E-value=2.1e-08 Score=111.50 Aligned_cols=205 Identities=12% Similarity=0.070 Sum_probs=124.0
Q ss_pred CcEEEEeCCCCeEEEEecccCCcceEEEEEecCCCCcEEEEEECC---CcEEEEECCCCCCCCCCCCCCCCceeecccCC
Q 004477 72 THINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGD---AEVRLFNLSRFSGRGLDDNAITPSALYQCHTR 148 (751)
Q Consensus 72 g~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~D---g~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~ 148 (751)
..|.+||.. +.....+ ..+...+.+.+|+|+ |+.|+..+.+ ..|.+||+..+. ...+....+
T Consensus 176 ~~L~~~D~d-G~~~~~l-~~~~~~v~~p~wSPD--G~~la~~s~~~~~~~I~~~dl~~g~-----------~~~l~~~~g 240 (427)
T PRK02889 176 YQLQISDAD-GQNAQSA-LSSPEPIISPAWSPD--GTKLAYVSFESKKPVVYVHDLATGR-----------RRVVANFKG 240 (427)
T ss_pred cEEEEECCC-CCCceEe-ccCCCCcccceEcCC--CCEEEEEEccCCCcEEEEEECCCCC-----------EEEeecCCC
Confidence 457777764 4444455 567888999999999 7888776643 359999998642 122333344
Q ss_pred ceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCCCCCCCCCCccceEEEecccCceecccCCCCCccceEEEEEeCCCC
Q 004477 149 RVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRP 228 (751)
Q Consensus 149 ~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~ 228 (751)
.+...+|+|++..++++.+.+|...+|.+...... ...+.. +........|+|+ +
T Consensus 241 ~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~---------------------~~~lt~---~~~~~~~~~wSpD-G 295 (427)
T PRK02889 241 SNSAPAWSPDGRTLAVALSRDGNSQIYTVNADGSG---------------------LRRLTQ---SSGIDTEPFFSPD-G 295 (427)
T ss_pred CccceEECCCCCEEEEEEccCCCceEEEEECCCCC---------------------cEECCC---CCCCCcCeEEcCC-C
Confidence 56688999955455557788888777765432100 000111 1223456789995 6
Q ss_pred cEEEEEe-CCCeEEEEeCC--CCCCccccCCCCCCCCccccccccccccCCccccceEEEEEcCCCCEEEEEeCCC---c
Q 004477 229 HLLLVGG-SDAFARLYDRR--MLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGE---H 302 (751)
Q Consensus 229 ~~l~sgs-~D~~IriwD~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~vt~v~fspdg~~Ll~~s~d~---~ 302 (751)
+.|+..+ .++...||.+. .... +... . .+. ......|||||++|+..+.++ .
T Consensus 296 ~~l~f~s~~~g~~~Iy~~~~~~g~~--------------~~lt---~--~g~---~~~~~~~SpDG~~Ia~~s~~~g~~~ 353 (427)
T PRK02889 296 RSIYFTSDRGGAPQIYRMPASGGAA--------------QRVT---F--TGS---YNTSPRISPDGKLLAYISRVGGAFK 353 (427)
T ss_pred CEEEEEecCCCCcEEEEEECCCCce--------------EEEe---c--CCC---CcCceEECCCCCEEEEEEccCCcEE
Confidence 6665544 45666666653 2211 0000 0 111 134578999999998776543 6
Q ss_pred EEEEECCCCCcceeeeecCCCceeEEeCCCCCCcccCC
Q 004477 303 VYLMDVNHAGGRAMRYTVGDASKIMSFTPTLNGLELQP 340 (751)
Q Consensus 303 I~lwdl~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~ 340 (751)
|++||+.++....+ ..........|+|+...+.+..
T Consensus 354 I~v~d~~~g~~~~l--t~~~~~~~p~~spdg~~l~~~~ 389 (427)
T PRK02889 354 LYVQDLATGQVTAL--TDTTRDESPSFAPNGRYILYAT 389 (427)
T ss_pred EEEEECCCCCeEEc--cCCCCccCceECCCCCEEEEEE
Confidence 99999988653322 2233445678899888776654
No 242
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.00 E-value=1.7e-09 Score=107.82 Aligned_cols=117 Identities=22% Similarity=0.198 Sum_probs=101.1
Q ss_pred CcchhHHHHHHHHHhhhcCCChhHHHHHhHHHHhcccCCCCCchhhhhHhHHHHHhhcccccchhhhHHHhhHHHhcCCC
Q 004477 359 GLGKCRMLVEIARNSLEEGKHPYYGIEACNEVLEGHLSGIGPMLRHECLCIRAALLLKRKWKNDAQMAIRDCYNARRIDS 438 (751)
Q Consensus 359 ~~~~~~~l~~~~~~~~~~g~~~~~ai~~~~~~i~~~~~~~~~~~~~~~~~~ra~~~~~r~w~~d~y~al~d~~~a~~~~~ 438 (751)
.....+.|+..++.....+. |..||+.|+++|...+.+ ...|||||++|++-+-. ..|+.||.+|+.+||
T Consensus 77 ~~~~AE~LK~eGN~~m~~~~-Y~eAv~kY~~AI~l~P~n------AVyycNRAAAy~~Lg~~---~~AVkDce~Al~iDp 146 (304)
T KOG0553|consen 77 DKALAESLKNEGNKLMKNKD-YQEAVDKYTEAIELDPTN------AVYYCNRAAAYSKLGEY---EDAVKDCESALSIDP 146 (304)
T ss_pred HHHHHHHHHHHHHHHHHhhh-HHHHHHHHHHHHhcCCCc------chHHHHHHHHHHHhcch---HHHHHHHHHHHhcCh
Confidence 44567889999999999998 999999999999987665 56999999999998764 359999999999999
Q ss_pred CCcchHHHHHHHHHHhcchHHHHHHHHHhcccCCCChhhhHHHHHHH
Q 004477 439 SSFRAHLYMSEALEQLCKYKEALDFAIAAQCLDPSNSVMAEKVENIK 485 (751)
Q Consensus 439 ~~~~a~~~~~~~l~~l~~~~~a~~~~~~~~~~~p~~~~~~~~~~~~~ 485 (751)
.+.|++.||.+|++.+|++.+|.++..+...+.|.....-..+....
T Consensus 147 ~yskay~RLG~A~~~~gk~~~A~~aykKaLeldP~Ne~~K~nL~~Ae 193 (304)
T KOG0553|consen 147 HYSKAYGRLGLAYLALGKYEEAIEAYKKALELDPDNESYKSNLKIAE 193 (304)
T ss_pred HHHHHHHHHHHHHHccCcHHHHHHHHHhhhccCCCcHHHHHHHHHHH
Confidence 99999999999999999999999999999999998765544443333
No 243
>PRK03629 tolB translocation protein TolB; Provisional
Probab=98.97 E-value=6.6e-08 Score=107.44 Aligned_cols=203 Identities=13% Similarity=0.145 Sum_probs=122.9
Q ss_pred cEEEEeCCCCeEEEEecccCCcceEEEEEecCCCCcEEEEEE---CCCcEEEEECCCCCCCCCCCCCCCCceeecccCCc
Q 004477 73 HINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGA---GDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRR 149 (751)
Q Consensus 73 ~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs---~Dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~ 149 (751)
.|.+||...... ..+ +.+...+.+.+|+|+ |+.|+..+ .+..|.+|++..+.. +.+..+. +.
T Consensus 180 ~l~~~d~dg~~~-~~l-t~~~~~~~~p~wSPD--G~~la~~s~~~g~~~i~i~dl~~G~~--------~~l~~~~---~~ 244 (429)
T PRK03629 180 ELRVSDYDGYNQ-FVV-HRSPQPLMSPAWSPD--GSKLAYVTFESGRSALVIQTLANGAV--------RQVASFP---RH 244 (429)
T ss_pred eEEEEcCCCCCC-EEe-ecCCCceeeeEEcCC--CCEEEEEEecCCCcEEEEEECCCCCe--------EEccCCC---CC
Confidence 688899874433 334 456778999999999 78777554 345799999976421 1122233 33
Q ss_pred eeEEEEecCCCCEEEEEeCCC--cEEEEecCCCCCCCCCCCCCCccceEEEecccCceecccCCCCCccceEEEEEeCCC
Q 004477 150 VKKLAVEVGNPHVVWSASEDG--TLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTR 227 (751)
Q Consensus 150 V~~l~~sp~~~~~l~s~s~Dg--~I~iwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~ 227 (751)
+..++|+|++..++++.+.+| .|.+||+.+++.. .+.. ....+....|+|+
T Consensus 245 ~~~~~~SPDG~~La~~~~~~g~~~I~~~d~~tg~~~-----------------------~lt~---~~~~~~~~~wSPD- 297 (429)
T PRK03629 245 NGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIR-----------------------QVTD---GRSNNTEPTWFPD- 297 (429)
T ss_pred cCCeEECCCCCEEEEEEcCCCCcEEEEEECCCCCEE-----------------------EccC---CCCCcCceEECCC-
Confidence 456899995544555555566 4888898765421 0110 1234567899995
Q ss_pred CcEEEEEeC-CCeEEEE--eCCCCCCccccCCCCCCCCccccccccccccCCccccceEEEEEcCCCCEEEEEeCC---C
Q 004477 228 PHLLLVGGS-DAFARLY--DRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSG---E 301 (751)
Q Consensus 228 ~~~l~sgs~-D~~Iriw--D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~vt~v~fspdg~~Ll~~s~d---~ 301 (751)
++.|+..+. ++...|| |+...... .+ ...+. ......|+|||++|+..+.+ .
T Consensus 298 G~~I~f~s~~~g~~~Iy~~d~~~g~~~--------------~l-----t~~~~---~~~~~~~SpDG~~Ia~~~~~~g~~ 355 (429)
T PRK03629 298 SQNLAYTSDQAGRPQVYKVNINGGAPQ--------------RI-----TWEGS---QNQDADVSSDGKFMVMVSSNGGQQ 355 (429)
T ss_pred CCEEEEEeCCCCCceEEEEECCCCCeE--------------Ee-----ecCCC---CccCEEECCCCCEEEEEEccCCCc
Confidence 676665554 4444555 55433210 00 00011 24568899999998876653 4
Q ss_pred cEEEEECCCCCcceeeeecCCCceeEEeCCCCCCcccCCC
Q 004477 302 HVYLMDVNHAGGRAMRYTVGDASKIMSFTPTLNGLELQPP 341 (751)
Q Consensus 302 ~I~lwdl~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~~ 341 (751)
.|++||+.++....+ . .........|+|+...+.+...
T Consensus 356 ~I~~~dl~~g~~~~L-t-~~~~~~~p~~SpDG~~i~~~s~ 393 (429)
T PRK03629 356 HIAKQDLATGGVQVL-T-DTFLDETPSIAPNGTMVIYSSS 393 (429)
T ss_pred eEEEEECCCCCeEEe-C-CCCCCCCceECCCCCEEEEEEc
Confidence 689999988643222 2 2223445778888887776554
No 244
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.94 E-value=1e-08 Score=102.63 Aligned_cols=243 Identities=17% Similarity=0.229 Sum_probs=150.3
Q ss_pred CcEEEEEECCCCC--EEEEEeCCCcEEEEeCCCCe-----------------------------------EEEEecccCC
Q 004477 51 GCVNAISWNSKGS--LLISGSDDTHINVWSYSSRK-----------------------------------LLHSIETGHS 93 (751)
Q Consensus 51 ~~V~~l~~s~dg~--~LaSgs~Dg~I~IWd~~~~~-----------------------------------~~~~l~~~h~ 93 (751)
..|+.+.|.++++ .++....|++|++|.+.... +...+..+|+
T Consensus 85 EKinkIrw~~~~n~a~FLlstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHt 164 (433)
T KOG1354|consen 85 EKINKIRWLDDGNLAEFLLSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHT 164 (433)
T ss_pred hhhhhceecCCCCccEEEEecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccce
Confidence 4689999998765 56666689999999875321 1112235799
Q ss_pred cceEEEEEecCCCCcEEEEEECCCcEEEEECCCCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCCcEE
Q 004477 94 ANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLR 173 (751)
Q Consensus 94 ~~V~~v~fsp~s~~~~l~sgs~Dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~ 173 (751)
..|+++.++.+ ...++|+ .|=.|.+|+++...+..- -...+| ..+..-+..|++..|+|..-++|+-.+..|+|+
T Consensus 165 yhiNSIS~NsD--~Et~lSA-DdLRINLWnlei~d~sFn-IVDIKP-~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIr 239 (433)
T KOG1354|consen 165 YHINSISVNSD--KETFLSA-DDLRINLWNLEIIDQSFN-IVDIKP-ANMEELTEVITSAEFHPHHCNVFVYSSSKGTIR 239 (433)
T ss_pred eEeeeeeecCc--cceEeec-cceeeeeccccccCCcee-EEEccc-cCHHHHHHHHhhhccCHhHccEEEEecCCCcEE
Confidence 99999999988 6777775 688999999986432110 000011 112223466899999998888999999999999
Q ss_pred EEecCCCCCCCCCCCCCCccceEEEecccCceecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCC-Ccc
Q 004477 174 QHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLP-PLT 252 (751)
Q Consensus 174 iwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~-~~~ 252 (751)
+-|+|....|-... ..+-....+.. ..++..-...|..+.|++. |+||++-.. -+|++||+.|.. ++.
T Consensus 240 LcDmR~~aLCd~hs-------KlfEepedp~~--rsffseiIsSISDvKFs~s-GryilsRDy-ltvk~wD~nme~~pv~ 308 (433)
T KOG1354|consen 240 LCDMRQSALCDAHS-------KLFEEPEDPSS--RSFFSEIISSISDVKFSHS-GRYILSRDY-LTVKLWDLNMEAKPVE 308 (433)
T ss_pred Eeechhhhhhcchh-------hhhccccCCcc--hhhHHHHhhhhhceEEccC-CcEEEEecc-ceeEEEeccccCCcce
Confidence 99999876552110 00000000000 0111112346888999994 788887543 689999997643 332
Q ss_pred ccCCCCCCCCccccccccccccCCccccceEEEEEcCCCCEEEEEeCCCcEEEEECCCCCcce
Q 004477 253 SCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRA 315 (751)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~vt~v~fspdg~~Ll~~s~d~~I~lwdl~~~~~~~ 315 (751)
.++..... -..++. +.+ ...-..-..++|+-++.++++|+..+.+++|++..+....
T Consensus 309 t~~vh~~l---r~kLc~--lYE-nD~IfdKFec~~sg~~~~v~TGsy~n~frvf~~~~gsk~d 365 (433)
T KOG1354|consen 309 TYPVHEYL---RSKLCS--LYE-NDAIFDKFECSWSGNDSYVMTGSYNNVFRVFNLARGSKED 365 (433)
T ss_pred EEeehHhH---HHHHHH--Hhh-ccchhheeEEEEcCCcceEecccccceEEEecCCCCccee
Confidence 22110000 000000 000 0011123568899999999999999999999987765443
No 245
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=98.93 E-value=2e-08 Score=106.77 Aligned_cols=196 Identities=16% Similarity=0.228 Sum_probs=141.5
Q ss_pred CCEEEEEeCCCcEEEEeCCCCeEEEEecccCCcceEEEEEecCCCCcEEEEEECCCcEEEEECCCCCCCCCCCCCCCCce
Q 004477 62 GSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSA 141 (751)
Q Consensus 62 g~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~Dg~V~vwd~~~~~~~~~~~~~~~~~~ 141 (751)
..+++.|+. ..|.=.+++.|+.+..+ ..-.+.+++|..++. ..+|++|+.||.|-.||.+..+.... .....
T Consensus 146 cDly~~gsg-~evYRlNLEqGrfL~P~-~~~~~~lN~v~in~~--hgLla~Gt~~g~VEfwDpR~ksrv~~----l~~~~ 217 (703)
T KOG2321|consen 146 CDLYLVGSG-SEVYRLNLEQGRFLNPF-ETDSGELNVVSINEE--HGLLACGTEDGVVEFWDPRDKSRVGT----LDAAS 217 (703)
T ss_pred ccEEEeecC-cceEEEEcccccccccc-ccccccceeeeecCc--cceEEecccCceEEEecchhhhhhee----eeccc
Confidence 344555544 46777799999988888 556689999999999 57999999999999999986432110 01111
Q ss_pred eecccCC-----ceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCCCCCCCCCCccceEEEecccCceecccCCCCCcc
Q 004477 142 LYQCHTR-----RVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTL 216 (751)
Q Consensus 142 ~~~~h~~-----~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 216 (751)
....|.+ .|+++.|+. ++-.++.|..+|.|.|||+|+.+++ +........
T Consensus 218 ~v~s~pg~~~~~svTal~F~d-~gL~~aVGts~G~v~iyDLRa~~pl------------------------~~kdh~~e~ 272 (703)
T KOG2321|consen 218 SVNSHPGGDAAPSVTALKFRD-DGLHVAVGTSTGSVLIYDLRASKPL------------------------LVKDHGYEL 272 (703)
T ss_pred ccCCCccccccCcceEEEecC-CceeEEeeccCCcEEEEEcccCCce------------------------eecccCCcc
Confidence 1223333 499999986 5788999999999999999998754 112223456
Q ss_pred ceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCccccCCCCCCCCccccccccccccCCccccceEEEEEcCCCCEEEE
Q 004477 217 SLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLL 296 (751)
Q Consensus 217 ~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~vt~v~fspdg~~Ll~ 296 (751)
+|..+.|.+.+..--++......++|||..++++...+. ....++.+++-|++-++++
T Consensus 273 pi~~l~~~~~~~q~~v~S~Dk~~~kiWd~~~Gk~~asiE----------------------pt~~lND~C~~p~sGm~f~ 330 (703)
T KOG2321|consen 273 PIKKLDWQDTDQQNKVVSMDKRILKIWDECTGKPMASIE----------------------PTSDLNDFCFVPGSGMFFT 330 (703)
T ss_pred ceeeecccccCCCceEEecchHHhhhcccccCCceeecc----------------------ccCCcCceeeecCCceEEE
Confidence 888999988655555556667889999999888665432 1113888999999999999
Q ss_pred EeCCCcEEEEECCCCC
Q 004477 297 SYSGEHVYLMDVNHAG 312 (751)
Q Consensus 297 ~s~d~~I~lwdl~~~~ 312 (751)
+-.+..+..|=+...+
T Consensus 331 Ane~~~m~~yyiP~LG 346 (703)
T KOG2321|consen 331 ANESSKMHTYYIPSLG 346 (703)
T ss_pred ecCCCcceeEEccccC
Confidence 9888777777665543
No 246
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=98.91 E-value=1.4e-07 Score=105.00 Aligned_cols=202 Identities=13% Similarity=0.095 Sum_probs=123.7
Q ss_pred CcEEEEeCCCCeEEEEecccCCcceEEEEEecCCCCcEEEEEECC---CcEEEEECCCCCCCCCCCCCCCCceeecccCC
Q 004477 72 THINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGD---AEVRLFNLSRFSGRGLDDNAITPSALYQCHTR 148 (751)
Q Consensus 72 g~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~D---g~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~ 148 (751)
..|.++|.... ....+ ..+...+.+.+|+|+ |++|+.++.+ ..|++||+.++. ...+..+..
T Consensus 170 ~~l~~~d~~g~-~~~~l-~~~~~~~~~p~~Spd--g~~la~~~~~~~~~~i~v~d~~~g~-----------~~~~~~~~~ 234 (417)
T TIGR02800 170 YELQVADYDGA-NPQTI-TRSREPILSPAWSPD--GQKLAYVSFESGKPEIYVQDLATGQ-----------REKVASFPG 234 (417)
T ss_pred ceEEEEcCCCC-CCEEe-ecCCCceecccCCCC--CCEEEEEEcCCCCcEEEEEECCCCC-----------EEEeecCCC
Confidence 35888887533 34445 456778999999999 7888876543 479999998642 223334556
Q ss_pred ceeEEEEecCCCCEEEEEeCCC--cEEEEecCCCCCCCCCCCCCCccceEEEecccCceecccCCCCCccceEEEEEeCC
Q 004477 149 RVKKLAVEVGNPHVVWSASEDG--TLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISST 226 (751)
Q Consensus 149 ~V~~l~~sp~~~~~l~s~s~Dg--~I~iwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~ 226 (751)
.+..++|+|++..++++.+.++ .|.+||+.++... .+.. +........|+|+
T Consensus 235 ~~~~~~~spDg~~l~~~~~~~~~~~i~~~d~~~~~~~-----------------------~l~~---~~~~~~~~~~s~d 288 (417)
T TIGR02800 235 MNGAPAFSPDGSKLAVSLSKDGNPDIYVMDLDGKQLT-----------------------RLTN---GPGIDTEPSWSPD 288 (417)
T ss_pred CccceEECCCCCEEEEEECCCCCccEEEEECCCCCEE-----------------------ECCC---CCCCCCCEEECCC
Confidence 6777999995545555666555 4888888765411 0100 1112335678995
Q ss_pred CCcEEEEEeC-CC--eEEEEeCCCCCCccccCCCCCCCCccccccccccccCCccccceEEEEEcCCCCEEEEEeCCC--
Q 004477 227 RPHLLLVGGS-DA--FARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGE-- 301 (751)
Q Consensus 227 ~~~~l~sgs~-D~--~IriwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~vt~v~fspdg~~Ll~~s~d~-- 301 (751)
++.|+..+. ++ .|.++|+...+.. .+ ...+ ..+..+.|+|+|++|+.++.++
T Consensus 289 -g~~l~~~s~~~g~~~iy~~d~~~~~~~--------------~l-----~~~~---~~~~~~~~spdg~~i~~~~~~~~~ 345 (417)
T TIGR02800 289 -GKSIAFTSDRGGSPQIYMMDADGGEVR--------------RL-----TFRG---GYNASPSWSPDGDLIAFVHREGGG 345 (417)
T ss_pred -CCEEEEEECCCCCceEEEEECCCCCEE--------------Ee-----ecCC---CCccCeEECCCCCEEEEEEccCCc
Confidence 666665543 33 5777777643311 00 0001 1256789999999999888765
Q ss_pred -cEEEEECCCCCcceeeeecCCCceeEEeCCCCCCcccC
Q 004477 302 -HVYLMDVNHAGGRAMRYTVGDASKIMSFTPTLNGLELQ 339 (751)
Q Consensus 302 -~I~lwdl~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~ 339 (751)
.|++||+.++.. .... .........|+|+.+.+.+.
T Consensus 346 ~~i~~~d~~~~~~-~~l~-~~~~~~~p~~spdg~~l~~~ 382 (417)
T TIGR02800 346 FNIAVMDLDGGGE-RVLT-DTGLDESPSFAPNGRMILYA 382 (417)
T ss_pred eEEEEEeCCCCCe-EEcc-CCCCCCCceECCCCCEEEEE
Confidence 899999987432 2222 22223445778877666554
No 247
>PRK01029 tolB translocation protein TolB; Provisional
Probab=98.87 E-value=5.3e-07 Score=99.94 Aligned_cols=231 Identities=12% Similarity=0.079 Sum_probs=128.0
Q ss_pred EeccCCCcEEEEEECCCCCEEE---EEeCCC--cEEEEeCCCCeEEEEecccCCcceEEEEEecCCCCcEEEEEE-CCC-
Q 004477 45 ELEGHQGCVNAISWNSKGSLLI---SGSDDT--HINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGA-GDA- 117 (751)
Q Consensus 45 ~L~gH~~~V~~l~~s~dg~~La---Sgs~Dg--~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs-~Dg- 117 (751)
.|......+..=.|+|||+.++ +...++ .|.+.++.+++... + ....+.....+|+|+ |+.|+..+ .+|
T Consensus 179 ~lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~-l-t~~~g~~~~p~wSPD--G~~Laf~s~~~g~ 254 (428)
T PRK01029 179 PLTQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKK-I-LALQGNQLMPTFSPR--KKLLAFISDRYGN 254 (428)
T ss_pred EcccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceE-e-ecCCCCccceEECCC--CCEEEEEECCCCC
Confidence 3444555666779999997532 333343 47777887665432 2 334556677899999 77776544 223
Q ss_pred ---cEEEEECCCCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCCCCCCCCCCccc
Q 004477 118 ---EVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECR 194 (751)
Q Consensus 118 ---~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~~~~~~~~~~ 194 (751)
.+.+|++..+... .+......+...+...+|+|++..++.+...+|...+|.+.....- ...
T Consensus 255 ~di~~~~~~~~~g~~g-------~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g--------~~~ 319 (428)
T PRK01029 255 PDLFIQSFSLETGAIG-------KPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEG--------QSP 319 (428)
T ss_pred cceeEEEeecccCCCC-------cceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccc--------cce
Confidence 3444676542110 1222333333445678999954334444446776666654321000 000
Q ss_pred eEEEecccCceecccCCCCCccceEEEEEeCCCCcEEEEEeCC---CeEEEEeCCCCCCccccCCCCCCCCccccccccc
Q 004477 195 NILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSD---AFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMH 271 (751)
Q Consensus 195 ~~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D---~~IriwD~~~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (751)
.. +.. ....+....|+|+ ++.|+..+.+ ..|.+||+.+++... +.
T Consensus 320 ~~-----------lt~---~~~~~~~p~wSPD-G~~Laf~~~~~g~~~I~v~dl~~g~~~~--------------Lt--- 367 (428)
T PRK01029 320 RL-----------LTK---KYRNSSCPAWSPD-GKKIAFCSVIKGVRQICVYDLATGRDYQ--------------LT--- 367 (428)
T ss_pred EE-----------ecc---CCCCccceeECCC-CCEEEEEEcCCCCcEEEEEECCCCCeEE--------------cc---
Confidence 00 110 1224567789995 6666655443 468999987654211 00
Q ss_pred cccCCccccceEEEEEcCCCCEEEEEeC---CCcEEEEECCCCCcceeeeecCCCceeEEeCCC
Q 004477 272 LSEHGRSSLHLTHVTFSPNGEEVLLSYS---GEHVYLMDVNHAGGRAMRYTVGDASKIMSFTPT 332 (751)
Q Consensus 272 ~~~~g~~~~~vt~v~fspdg~~Ll~~s~---d~~I~lwdl~~~~~~~~~~~~~~~~~~~~~sp~ 332 (751)
.+ ...+....|+|||++|+.... ...|++||+.++....+ ..........+|+|.
T Consensus 368 ---~~--~~~~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~~g~~~~L-t~~~g~~~~p~Ws~~ 425 (428)
T PRK01029 368 ---TS--PENKESPSWAIDSLHLVYSAGNSNESELYLISLITKKTRKI-VIGSGEKRFPSWGAF 425 (428)
T ss_pred ---CC--CCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEe-ecCCCcccCceecCC
Confidence 00 112567899999998886543 46799999988653333 223333445666664
No 248
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=98.87 E-value=2.7e-08 Score=99.77 Aligned_cols=245 Identities=18% Similarity=0.268 Sum_probs=152.0
Q ss_pred hccccccEEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEeC-CCC---------------------------------
Q 004477 37 VRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSY-SSR--------------------------------- 82 (751)
Q Consensus 37 i~~~~~~~~L~gH~~~V~~l~~s~dg~~LaSgs~Dg~I~IWd~-~~~--------------------------------- 82 (751)
..++...+....|...|..+-|+...+++++.+.|+.+. |.. +.+
T Consensus 101 fnkm~~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~-~hc~e~~~~lg~Y~~~~~~t~~~~d~~~~fvGd~~gqvt~ 179 (404)
T KOG1409|consen 101 FNKMTFLKDYLAHQARVSAIVFSLTHEWVLSTGKDKQFA-WHCTESGNRLGGYNFETPASALQFDALYAFVGDHSGQITM 179 (404)
T ss_pred hhhcchhhhhhhhhcceeeEEecCCceeEEEeccccceE-EEeeccCCcccceEeeccCCCCceeeEEEEecccccceEE
Confidence 456667777788999999999998888888888876543 321 111
Q ss_pred --------eEEEEecccCCcceEEEEEecCCCCcEEEEEECCCcEEEEECCCCCCCCCCCCCCCCceeecccCCceeEEE
Q 004477 83 --------KLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLA 154 (751)
Q Consensus 83 --------~~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~Dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~ 154 (751)
.++.++ .+|.+.|.+++|.|. ..+|.+|+.|..|.+||+....+ ....+.+|.+.|..+.
T Consensus 180 lr~~~~~~~~i~~~-~~h~~~~~~l~Wd~~--~~~LfSg~~d~~vi~wdigg~~g---------~~~el~gh~~kV~~l~ 247 (404)
T KOG1409|consen 180 LKLEQNGCQLITTF-NGHTGEVTCLKWDPG--QRLLFSGASDHSVIMWDIGGRKG---------TAYELQGHNDKVQALS 247 (404)
T ss_pred EEEeecCCceEEEE-cCcccceEEEEEcCC--CcEEEeccccCceEEEeccCCcc---------eeeeeccchhhhhhhh
Confidence 122333 689999999999999 78999999999999999986543 3567889999999998
Q ss_pred EecCCCCEEEEEeCCCcEEEEecCCCCCCCCCCCCCCccc----eEEEecccCc---eecccCC-CCCccceEEEEEeCC
Q 004477 155 VEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECR----NILLDLRCGA---KRSLADP-PKQTLSLKSCDISST 226 (751)
Q Consensus 155 ~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~~~~~~~~~~----~~l~~~~~~~---~~~~~~~-~~~~~~v~~i~~sp~ 226 (751)
..+ --..+.++++||.|.+||+.......+.......|. -.+|+.+.-. ...+... -.+.....+..-+.
T Consensus 248 ~~~-~t~~l~S~~edg~i~~w~mn~~r~etpewl~s~~cQ~c~qpffwn~~~m~~~k~~glr~h~crkcg~avc~~c~s- 325 (404)
T KOG1409|consen 248 YAQ-HTRQLISCGEDGGIVVWNMNVKRVETPEWLDSDSCQKCNQPFFWNFRQMWDRKQLGLRQHHCRKCGKAVCGKCSS- 325 (404)
T ss_pred hhh-hheeeeeccCCCeEEEEeccceeecCccccccchhhhhCchHHHHHHHHHhhhhhhhhhhhhhhhhhhcCccccc-
Confidence 877 557888999999999999987654322222222221 1122221100 0000000 00111111111111
Q ss_pred CCcEEEEEeCCCeEEEEeCCCCCCccccCCCCCCCCccccccccccccCCccccceEEEEEcCCCCEEEEEeCCCcEEEE
Q 004477 227 RPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLM 306 (751)
Q Consensus 227 ~~~~l~sgs~D~~IriwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~vt~v~fspdg~~Ll~~s~d~~I~lw 306 (751)
+.....+-+..-.+|+-|.-....... ++ .|.-.....|++ |+.+.+...-..|++++.|..|+||
T Consensus 326 ~~~~~p~mg~e~~vR~~~~c~~~i~~~------~~------t~LA~phei~tg--ItamhlqetlglLvTsG~~Rvi~iw 391 (404)
T KOG1409|consen 326 NRSSYPTMGFEFSVRVCDSCYPTIKDE------ER------TPLAIPHEIKTG--ITAMHLQETLGLLVTSGTDRVIKIW 391 (404)
T ss_pred CccccccccceeEEEEecccchhhhcC------CC------Cccccccccccc--eeEEEhhhhccceeecCCceEEEEE
Confidence 122333334444555555432110000 00 011111223444 9999999998899999999999999
Q ss_pred ECCC
Q 004477 307 DVNH 310 (751)
Q Consensus 307 dl~~ 310 (751)
|+..
T Consensus 392 d~~~ 395 (404)
T KOG1409|consen 392 DVRS 395 (404)
T ss_pred echh
Confidence 9886
No 249
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=98.86 E-value=1.9e-07 Score=100.89 Aligned_cols=263 Identities=12% Similarity=0.144 Sum_probs=148.6
Q ss_pred hccccccEEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEecccCCcceEEEEEecCCCCcEEEEE-EC
Q 004477 37 VRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSG-AG 115 (751)
Q Consensus 37 i~~~~~~~~L~gH~~~V~~l~~s~dg~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~s~~~~l~sg-s~ 115 (751)
..+.+.+.++......-..+.|+|||+++.+++.||.|.++|+.+++.+.++..| ....+++++|+ |++++++ ..
T Consensus 23 ~~t~~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G--~~~~~i~~s~D--G~~~~v~n~~ 98 (369)
T PF02239_consen 23 GATNKVVARIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKVG--GNPRGIAVSPD--GKYVYVANYE 98 (369)
T ss_dssp TTT-SEEEEEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-S--SEEEEEEE--T--TTEEEEEEEE
T ss_pred CCCCeEEEEEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEecC--CCcceEEEcCC--CCEEEEEecC
Confidence 4556778888766554455789999999999999999999999999999998443 44788999999 7887755 57
Q ss_pred CCcEEEEECCCCCCCCCCCCCCCCceeecc-------cCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCCCCCCC
Q 004477 116 DAEVRLFNLSRFSGRGLDDNAITPSALYQC-------HTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGS 188 (751)
Q Consensus 116 Dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~-------h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~~~~ 188 (751)
++.|.|+|..+. ++++.+.. ...+|..|..+|..+.++++--+-+.|.+.|.......
T Consensus 99 ~~~v~v~D~~tl----------e~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~----- 163 (369)
T PF02239_consen 99 PGTVSVIDAETL----------EPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNL----- 163 (369)
T ss_dssp TTEEEEEETTT------------EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCE-----
T ss_pred CCceeEeccccc----------cceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEecccccc-----
Confidence 899999999864 44555432 24567788888854445545555588888887765321
Q ss_pred CCCccceEEEecccCceecccCCCCCccceEEEEEeCCCCcEEEE-EeCCCeEEEEeCCCCCCccccCCCCCC-------
Q 004477 189 SHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLV-GGSDAFARLYDRRMLPPLTSCQKRMSP------- 260 (751)
Q Consensus 189 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~s-gs~D~~IriwD~~~~~~~~~~~~~~~~------- 260 (751)
...... .........|+|+ ++++++ ...+..|-++|..+.+.+..+.....+
T Consensus 164 -----~~~~i~--------------~g~~~~D~~~dpd-gry~~va~~~sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~ 223 (369)
T PF02239_consen 164 -----KVTTIK--------------VGRFPHDGGFDPD-GRYFLVAANGSNKIAVIDTKTGKLVALIDTGKKPHPGPGAN 223 (369)
T ss_dssp -----EEEEEE----------------TTEEEEEE-TT-SSEEEEEEGGGTEEEEEETTTTEEEEEEE-SSSBEETTEEE
T ss_pred -----ceeeec--------------ccccccccccCcc-cceeeecccccceeEEEeeccceEEEEeecccccccccccc
Confidence 001111 1234567889995 565554 556778889998877644333221111
Q ss_pred ---CCccccccccc--------cc-------c-C--------CccccceEEEEEcCCCCEEEEE----eCCCcEEEEECC
Q 004477 261 ---PPCVNYFCPMH--------LS-------E-H--------GRSSLHLTHVTFSPNGEEVLLS----YSGEHVYLMDVN 309 (751)
Q Consensus 261 ---~~~~~~~~~~~--------~~-------~-~--------g~~~~~vt~v~fspdg~~Ll~~----s~d~~I~lwdl~ 309 (751)
+..-..+...+ +. . . ...+.+ ..+..+|++++|.+. ...++|.++|.+
T Consensus 224 ~php~~g~vw~~~~~~~~~~~~ig~~~v~v~d~~~wkvv~~I~~~G~g-lFi~thP~s~~vwvd~~~~~~~~~v~viD~~ 302 (369)
T PF02239_consen 224 FPHPGFGPVWATSGLGYFAIPLIGTDPVSVHDDYAWKVVKTIPTQGGG-LFIKTHPDSRYVWVDTFLNPDADTVQVIDKK 302 (369)
T ss_dssp EEETTTEEEEEEEBSSSSEEEEEE--TTT-STTTBTSEEEEEE-SSSS---EE--TT-SEEEEE-TT-SSHT-EEEEECC
T ss_pred ccCCCcceEEeeccccceecccccCCccccchhhcCeEEEEEECCCCc-ceeecCCCCccEEeeccCCCCCceEEEEECc
Confidence 00000000000 00 0 0 001112 567889999999998 335899999999
Q ss_pred CCCcceee-eecCCCceeEEeCCCCCCcccC
Q 004477 310 HAGGRAMR-YTVGDASKIMSFTPTLNGLELQ 339 (751)
Q Consensus 310 ~~~~~~~~-~~~~~~~~~~~~sp~~~~~~~~ 339 (751)
+.+..... ...+...-.+.|+++...+-++
T Consensus 303 tl~~~~~i~~~~~~~~~h~ef~~dG~~v~vS 333 (369)
T PF02239_consen 303 TLKVVKTITPGPGKRVVHMEFNPDGKEVWVS 333 (369)
T ss_dssp GTEEEE-HHHHHT--EEEEEE-TTSSEEEEE
T ss_pred CcceeEEEeccCCCcEeccEECCCCCEEEEE
Confidence 95321111 1122335567888887765544
No 250
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=98.86 E-value=1.6e-06 Score=92.19 Aligned_cols=218 Identities=11% Similarity=0.150 Sum_probs=131.4
Q ss_pred EEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEecccCCcceEEEEEecCCCCcEEEEEECC-----------CcEEE
Q 004477 53 VNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGD-----------AEVRL 121 (751)
Q Consensus 53 V~~l~~s~dg~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~D-----------g~V~v 121 (751)
=+-+.|||.|+||+|-..-| |.+|--.+...++.+ .|. .|.-+.|||. .++|+|=|.. ..++|
T Consensus 213 etyv~wSP~GTYL~t~Hk~G-I~lWGG~~f~r~~RF--~Hp-~Vq~idfSP~--EkYLVT~s~~p~~~~~~d~e~~~l~I 286 (698)
T KOG2314|consen 213 ETYVRWSPKGTYLVTFHKQG-IALWGGESFDRIQRF--YHP-GVQFIDFSPN--EKYLVTYSPEPIIVEEDDNEGQQLII 286 (698)
T ss_pred eeeEEecCCceEEEEEeccc-eeeecCccHHHHHhc--cCC-CceeeecCCc--cceEEEecCCccccCcccCCCceEEE
Confidence 35789999999999998765 899998877777777 465 4899999999 7999987632 57899
Q ss_pred EECCCCCCCCCCCCCCCCceeecc--cCCcee-EEEEecCCCCEEEEEeCCCcEEEEecCCCCCCCCCCCCCCccceEEE
Q 004477 122 FNLSRFSGRGLDDNAITPSALYQC--HTRRVK-KLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILL 198 (751)
Q Consensus 122 wd~~~~~~~~~~~~~~~~~~~~~~--h~~~V~-~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~~~~~~~~~~~~l~ 198 (751)
||+.++. ....|.. ....+. -..||. +.+++|.-.. .+|.||+...-. ++
T Consensus 287 WDI~tG~----------lkrsF~~~~~~~~~WP~frWS~-DdKy~Arm~~-~sisIyEtpsf~---------------ll 339 (698)
T KOG2314|consen 287 WDIATGL----------LKRSFPVIKSPYLKWPIFRWSH-DDKYFARMTG-NSISIYETPSFM---------------LL 339 (698)
T ss_pred EEccccc----------hhcceeccCCCccccceEEecc-CCceeEEecc-ceEEEEecCcee---------------ee
Confidence 9999763 2344433 222233 347888 5578876666 578888765422 11
Q ss_pred ecccCceecccCCCCCccceEEEEEeCCCCcEEEEEeC-----CCeEEEEeCCCCCCccccCCCCCCCCccccccccccc
Q 004477 199 DLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGS-----DAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLS 273 (751)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~-----D~~IriwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (751)
+.+ .-....|....|+|. +.+||-=.. -..+-|-.+-+.+.+.. ..+.
T Consensus 340 d~K----------slki~gIr~FswsP~-~~llAYwtpe~~~~parvtL~evPs~~~iRt----------------~nlf 392 (698)
T KOG2314|consen 340 DKK----------SLKISGIRDFSWSPT-SNLLAYWTPETNNIPARVTLMEVPSKREIRT----------------KNLF 392 (698)
T ss_pred ccc----------ccCCccccCcccCCC-cceEEEEcccccCCcceEEEEecCccceeee----------------ccce
Confidence 111 112346778889994 444432110 01122222221111110 0000
Q ss_pred cCCccccceEEEEEcCCCCEEEEEeC----------CCcEEEEECCCCCcceeeeecCCCceeEEeCCCCCC
Q 004477 274 EHGRSSLHLTHVTFSPNGEEVLLSYS----------GEHVYLMDVNHAGGRAMRYTVGDASKIMSFTPTLNG 335 (751)
Q Consensus 274 ~~g~~~~~vt~v~fspdg~~Ll~~s~----------d~~I~lwdl~~~~~~~~~~~~~~~~~~~~~sp~~~~ 335 (751)
+..=..+.|-.+|.+|++--. -..+-||.++....+.......+.+-.++|-|.++.
T Consensus 393 -----nVsDckLhWQk~gdyLcvkvdR~tK~~~~g~f~n~eIfrireKdIpve~velke~vi~FaWEP~gdk 459 (698)
T KOG2314|consen 393 -----NVSDCKLHWQKSGDYLCVKVDRHTKSKVKGQFSNLEIFRIREKDIPVEVVELKESVIAFAWEPHGDK 459 (698)
T ss_pred -----eeeccEEEeccCCcEEEEEEEeeccccccceEeeEEEEEeeccCCCceeeecchheeeeeeccCCCe
Confidence 001134677788888876532 124677777775555555566677777778776543
No 251
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=98.85 E-value=5.5e-08 Score=97.58 Aligned_cols=244 Identities=18% Similarity=0.202 Sum_probs=172.3
Q ss_pred ccccccEEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEe-CCCCeEEEEecccCCcceEEEEEecCCCCcEEEEEECC
Q 004477 38 RRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWS-YSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGD 116 (751)
Q Consensus 38 ~~~~~~~~L~gH~~~V~~l~~s~dg~~LaSgs~Dg~I~IWd-~~~~~~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~D 116 (751)
.+..+.+.++||.+.|++...-|...-+.+.+.|.+++||- ...++.-..+...-..++.++.+.++ -..|+.|-..
T Consensus 12 ~kp~ll~~~eG~~d~vn~~~l~~~e~gv~~~s~drtvrv~lkrds~q~wpsI~~~mP~~~~~~~y~~e--~~~L~vg~~n 89 (404)
T KOG1409|consen 12 KKPELLSKIEGSQDDVNAAILIPKEEGVISVSEDRTVRVWLKRDSGQYWPSIYHYMPSPCSAMEYVSE--SRRLYVGQDN 89 (404)
T ss_pred cchhhhhhhcCchhhhhhheeccCCCCeEEccccceeeeEEeccccccCchhhhhCCCCceEeeeecc--ceEEEEEEec
Confidence 34456677899999999999999888899999999999995 34555544554445678999999998 4888889899
Q ss_pred CcEEEEECCCCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCCCCCC-----CC-C
Q 004477 117 AEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAG-----SS-H 190 (751)
Q Consensus 117 g~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~~~-----~~-~ 190 (751)
|+|.-+.+..-- +....++.+..|..+|..+-|+- ....+++++.|..+.-.-.+.+..+.... .. .
T Consensus 90 gtvtefs~sedf------nkm~~~r~~~~h~~~v~~~if~~-~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~~~~~~t~~~ 162 (404)
T KOG1409|consen 90 GTVTEFALSEDF------NKMTFLKDYLAHQARVSAIVFSL-THEWVLSTGKDKQFAWHCTESGNRLGGYNFETPASALQ 162 (404)
T ss_pred ceEEEEEhhhhh------hhcchhhhhhhhhcceeeEEecC-CceeEEEeccccceEEEeeccCCcccceEeeccCCCCc
Confidence 999888775311 11245677788999999999987 56788899999988655555554331000 00 0
Q ss_pred CccceEEEeccc----------CceecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCccccCCCCCC
Q 004477 191 QECRNILLDLRC----------GAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSP 260 (751)
Q Consensus 191 ~~~~~~l~~~~~----------~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~~~~~~~~~~ 260 (751)
.+....+.+-.. .....+....+|...+++++|.|. ..++.+|..|..|.+||+--.+...
T Consensus 163 ~d~~~~fvGd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~-~~~LfSg~~d~~vi~wdigg~~g~~-------- 233 (404)
T KOG1409|consen 163 FDALYAFVGDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDPG-QRLLFSGASDHSVIMWDIGGRKGTA-------- 233 (404)
T ss_pred eeeEEEEecccccceEEEEEeecCCceEEEEcCcccceEEEEEcCC-CcEEEeccccCceEEEeccCCccee--------
Confidence 000011111122 222233445678899999999994 7899999999999999996443211
Q ss_pred CCccccccccccccCCccccceEEEEEcCCCCEEEEEeCCCcEEEEECCCC
Q 004477 261 PPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHA 311 (751)
Q Consensus 261 ~~~~~~~~~~~~~~~g~~~~~vt~v~fspdg~~Ll~~s~d~~I~lwdl~~~ 311 (751)
+ ...+|.. .|..+..-+--+.|++++.||.|-+||++..
T Consensus 234 -----~------el~gh~~-kV~~l~~~~~t~~l~S~~edg~i~~w~mn~~ 272 (404)
T KOG1409|consen 234 -----Y------ELQGHND-KVQALSYAQHTRQLISCGEDGGIVVWNMNVK 272 (404)
T ss_pred -----e------eeccchh-hhhhhhhhhhheeeeeccCCCeEEEEeccce
Confidence 0 1133443 4777777778889999999999999999984
No 252
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=98.82 E-value=1.8e-08 Score=119.05 Aligned_cols=194 Identities=14% Similarity=0.213 Sum_probs=155.6
Q ss_pred eccCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEecccCCcceEEEEEecCCCCcEEEEEECCCcEEEEECC
Q 004477 46 LEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLS 125 (751)
Q Consensus 46 L~gH~~~V~~l~~s~dg~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~Dg~V~vwd~~ 125 (751)
++-|-..|.++.=+|...+.+||+.||.|++|....+..+..+.++-...|+.+.|+.. |+.+..+..||.+.+|.+.
T Consensus 2204 ~k~~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~~f~~q--Gnk~~i~d~dg~l~l~q~~ 2281 (2439)
T KOG1064|consen 2204 IKHPVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGNSRVTRSRFNHQ--GNKFGIVDGDGDLSLWQAS 2281 (2439)
T ss_pred eecccCceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeeccCcchhhhhhhccc--CCceeeeccCCceeecccC
Confidence 34455678888888889999999999999999999999888887777799999999998 8899999999999999998
Q ss_pred CCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEe---CCCcEEEEecCCCCCCCCCCCCCCccceEEEeccc
Q 004477 126 RFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSAS---EDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRC 202 (751)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s---~Dg~I~iwDlr~~~~~~~~~~~~~~~~~~l~~~~~ 202 (751)
. ++....+||+.......|-. .++++++ .++.+.+||.--.... .+
T Consensus 2282 p-----------k~~~s~qchnk~~~Df~Fi~---s~~~tag~s~d~~n~~lwDtl~~~~~------------s~----- 2330 (2439)
T KOG1064|consen 2282 P-----------KPYTSWQCHNKALSDFRFIG---SLLATAGRSSDNRNVCLWDTLLPPMN------------SL----- 2330 (2439)
T ss_pred C-----------cceeccccCCccccceeeee---hhhhccccCCCCCcccchhcccCccc------------ce-----
Confidence 3 67888999999999999964 5677764 4788999997654311 00
Q ss_pred CceecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCccccCCCCCCCCccccccccccccCCccccce
Q 004477 203 GAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHL 282 (751)
Q Consensus 203 ~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v 282 (751)
+. ..|...++++++-| ...+|++|+.+|.|++||++-.+....++ .
T Consensus 2331 -----v~--~~H~~gaT~l~~~P-~~qllisggr~G~v~l~D~rqrql~h~~~--------------------------~ 2376 (2439)
T KOG1064|consen 2331 -----VH--TCHDGGATVLAYAP-KHQLLISGGRKGEVCLFDIRQRQLRHTFQ--------------------------A 2376 (2439)
T ss_pred -----ee--eecCCCceEEEEcC-cceEEEecCCcCcEEEeehHHHHHHHHhh--------------------------h
Confidence 11 23778899999999 47899999999999999998654322211 1
Q ss_pred EEEEEcCCCCEEEEEeCCCcEEEEECCCC
Q 004477 283 THVTFSPNGEEVLLSYSGEHVYLMDVNHA 311 (751)
Q Consensus 283 t~v~fspdg~~Ll~~s~d~~I~lwdl~~~ 311 (751)
+. ...++++++..|.|+||++...
T Consensus 2377 ----~~-~~~~f~~~ss~g~ikIw~~s~~ 2400 (2439)
T KOG1064|consen 2377 ----LD-TREYFVTGSSEGNIKIWRLSEF 2400 (2439)
T ss_pred ----hh-hhheeeccCcccceEEEEcccc
Confidence 33 5567899999999999999884
No 253
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=98.81 E-value=1.3e-06 Score=93.41 Aligned_cols=220 Identities=12% Similarity=0.199 Sum_probs=131.6
Q ss_pred cEEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEecccCCcceEEEEEecCCCCcEEEEE-----ECC-----CcEEE
Q 004477 52 CVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSG-----AGD-----AEVRL 121 (751)
Q Consensus 52 ~V~~l~~s~dg~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~s~~~~l~sg-----s~D-----g~V~v 121 (751)
.++..+++++|+++|-+. +..++|++..+...+.+... ..++++.|+|. |.+|.|= ..+ -.+++
T Consensus 36 ~~~v~~~S~~G~lfA~~~-~~~v~i~~~~~~~~~lt~~~---~~~~~L~fSP~--g~yL~T~e~~~i~~~~~~~~pn~~v 109 (566)
T KOG2315|consen 36 PCNVFAYSNNGRLFAYSD-NQVVKVFEIATLKVVLCVEL---KKTYDLLFSPK--GNYLLTWEPWAIYGPKNASNPNVLV 109 (566)
T ss_pred cceeEEEcCCCcEEEEEc-CCeEEEEEccCCcEEEEecc---ceeeeeeeccc--ccccccccccccccCCCCCCCceee
Confidence 367888999999888775 45899999988865555522 27999999999 7777642 223 34669
Q ss_pred EECCCCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCCCCCCCCCCccceEEEecc
Q 004477 122 FNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLR 201 (751)
Q Consensus 122 wd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~~~~~~~~~~~~l~~~~ 201 (751)
|++.+. .....+..-...-++..|+.++ .+ +.=--.+.+.+|++...+..
T Consensus 110 ~~vet~----------~~~s~~q~k~Q~~W~~qfs~dE-sl-~arlv~nev~f~~~~~f~~~------------------ 159 (566)
T KOG2315|consen 110 YNVETG----------VQRSQIQKKMQNGWVPQFSIDE-SL-AARLVSNEVQFYDLGSFKTI------------------ 159 (566)
T ss_pred eeeccc----------eehhheehhhhcCcccccccch-hh-hhhhhcceEEEEecCCccce------------------
Confidence 998863 1122222222222578888744 32 22223467889998764311
Q ss_pred cCceecccCCCCCccceEEEEEeCC-CCcEEEE-----EeCCCeEEEEeCCCCCCccccCCCCCCCCccccccccccccC
Q 004477 202 CGAKRSLADPPKQTLSLKSCDISST-RPHLLLV-----GGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEH 275 (751)
Q Consensus 202 ~~~~~~~~~~~~~~~~v~~i~~sp~-~~~~l~s-----gs~D~~IriwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (751)
...-+...++.+.++|. .+..+++ ++.-+.||||.......... ..+...|.
T Consensus 160 --------~~kl~~~~i~~f~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~~~~~~~-------~a~ksFFk------- 217 (566)
T KOG2315|consen 160 --------QHKLSVSGITMLSLSPGPEPPFVAVYVPEKKGAPASVRIYKYPEEGQHQP-------VANKSFFK------- 217 (566)
T ss_pred --------eeeeeccceeeEEecCCCCCceEEEEccCCCCCCcEEEEeccccccccch-------hhhccccc-------
Confidence 00113456778888884 2344443 35667899998763221111 11111111
Q ss_pred CccccceEEEEEcCCCCEEEE-EeC--C---------CcEEEEECCCCCcceeeeecCCCceeEEeCCCCC
Q 004477 276 GRSSLHLTHVTFSPNGEEVLL-SYS--G---------EHVYLMDVNHAGGRAMRYTVGDASKIMSFTPTLN 334 (751)
Q Consensus 276 g~~~~~vt~v~fspdg~~Ll~-~s~--d---------~~I~lwdl~~~~~~~~~~~~~~~~~~~~~sp~~~ 334 (751)
.+ =-.+.|++-|.-|++ .+. | .++|+.+++ +....+.....+++..++|+|+..
T Consensus 218 --ad--kvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~-g~s~~V~L~k~GPVhdv~W~~s~~ 283 (566)
T KOG2315|consen 218 --AD--KVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQ-GESVSVPLLKEGPVHDVTWSPSGR 283 (566)
T ss_pred --cc--eeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEec-CceEEEecCCCCCceEEEECCCCC
Confidence 01 124678877764332 222 3 479999998 344555666678999999998754
No 254
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.76 E-value=1.8e-07 Score=92.59 Aligned_cols=237 Identities=14% Similarity=0.220 Sum_probs=148.7
Q ss_pred CCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCe-EEE----EecccCC------------cceEEEEEecCCCCcEEE
Q 004477 49 HQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRK-LLH----SIETGHS------------ANVFCTKFVPETSDELVV 111 (751)
Q Consensus 49 H~~~V~~l~~s~dg~~LaSgs~Dg~I~IWd~~~~~-~~~----~l~~~h~------------~~V~~v~fsp~s~~~~l~ 111 (751)
..+.|+++.|...|.+||+|..-|.|.++.-.... +.. .+ ++|. ..|..+.|..+++-..++
T Consensus 25 ead~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teF-Qshe~EFDYLkSleieEKin~I~w~~~t~r~hFL 103 (460)
T COG5170 25 EADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEF-QSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFL 103 (460)
T ss_pred ccceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhh-cccccchhhhhhccHHHHhhheeeecCCCcceEE
Confidence 35679999999999999999999999999754321 212 23 4553 458899999886555667
Q ss_pred EEECCCcEEEEECCCCCCCCCCCC------------------C--------------CCCceee-cccCCceeEEEEecC
Q 004477 112 SGAGDAEVRLFNLSRFSGRGLDDN------------------A--------------ITPSALY-QCHTRRVKKLAVEVG 158 (751)
Q Consensus 112 sgs~Dg~V~vwd~~~~~~~~~~~~------------------~--------------~~~~~~~-~~h~~~V~~l~~sp~ 158 (751)
....|.+|++|-+....-+.+..+ + ..+.+.+ ..|.-.+.++.|..
T Consensus 104 lstNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~Ns- 182 (460)
T COG5170 104 LSTNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNS- 182 (460)
T ss_pred EecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeecC-
Confidence 777899999999875321111000 0 0112222 56778899999987
Q ss_pred CCCEEEEEeCCCcEEEEecCCCCCCCCCCCCCCccceEEEecccCceecccCCCCCccceEEEEEeCCCCcEEEEEeCCC
Q 004477 159 NPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDA 238 (751)
Q Consensus 159 ~~~~l~s~s~Dg~I~iwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~ 238 (751)
+...++ .+.|=.|-+|++.-...+ .+ +.+...... ..-..-|++..|+|.....+.-.+..|
T Consensus 183 D~et~l-SaDdLrINLWnl~i~D~s----------Fn-IVDiKP~nm------eeLteVItSaeFhp~~cn~fmYSsSkG 244 (460)
T COG5170 183 DKETLL-SADDLRINLWNLEIIDGS----------FN-IVDIKPHNM------EELTEVITSAEFHPEMCNVFMYSSSKG 244 (460)
T ss_pred chheee-eccceeeeeccccccCCc----------eE-EEeccCccH------HHHHHHHhhcccCHhHcceEEEecCCC
Confidence 445554 456788999998765422 11 222221110 012345788899998778888889999
Q ss_pred eEEEEeCCCCCCcc---ccCCCCCCCCccccccccccccCCccccceEEEEEcCCCCEEEEEeCCCcEEEEECCCCCcc
Q 004477 239 FARLYDRRMLPPLT---SCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGR 314 (751)
Q Consensus 239 ~IriwD~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~g~~~~~vt~v~fspdg~~Ll~~s~d~~I~lwdl~~~~~~ 314 (751)
.|++-|+|...... ++......+..+..| .+- -..|..+.|+++|+++++-.. -+|+|||++..+.+
T Consensus 245 ~Ikl~DlRq~alcdn~~klfe~~~D~v~~~ff-------~ei-vsSISD~kFs~ngryIlsRdy-ltvkiwDvnm~k~p 314 (460)
T COG5170 245 EIKLNDLRQSALCDNSKKLFELTIDGVDVDFF-------EEI-VSSISDFKFSDNGRYILSRDY-LTVKIWDVNMAKNP 314 (460)
T ss_pred cEEehhhhhhhhccCchhhhhhccCcccchhH-------HHH-hhhhcceEEcCCCcEEEEecc-ceEEEEecccccCC
Confidence 99999998432110 000000000001111 001 114889999999999876544 59999999986533
No 255
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=98.75 E-value=3.1e-08 Score=107.80 Aligned_cols=240 Identities=15% Similarity=0.160 Sum_probs=160.1
Q ss_pred CCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCC-eEEEEecccCCcceEEEEEecCCCCcEEEEEECCCcEEEEECCCCC
Q 004477 50 QGCVNAISWNSKGSLLISGSDDTHINVWSYSSR-KLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFS 128 (751)
Q Consensus 50 ~~~V~~l~~s~dg~~LaSgs~Dg~I~IWd~~~~-~~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~Dg~V~vwd~~~~~ 128 (751)
.+.++++..+|.|+-+|.++.-|.+. -|+... ....-+...-.=.|-.+.|+|...-.+-+..-....-.+|++...+
T Consensus 24 ~~~~~a~si~p~grdi~lAsr~gl~i-~dld~p~~ppr~l~h~tpw~vad~qws~h~a~~~wiVsts~qkaiiwnlA~ss 102 (1081)
T KOG0309|consen 24 DGGFNAVSINPSGRDIVLASRQGLYI-IDLDDPFTPPRWLHHITPWQVADVQWSPHPAKPYWIVSTSNQKAIIWNLAKSS 102 (1081)
T ss_pred cCcccceeeccccchhhhhhhcCeEE-EeccCCCCCceeeeccCcchhcceecccCCCCceeEEecCcchhhhhhhhcCC
Confidence 46788999999999999998876544 465432 2222221111234778889987533444433344566789998654
Q ss_pred CCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCCCCCCCCCCccceEEEecccCceecc
Q 004477 129 GRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSL 208 (751)
Q Consensus 129 ~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 208 (751)
.+. .-..+.+|+..|+.+.|+|..+.++++++-|-.+..||+|...... . .+.
T Consensus 103 ~~a-------Ief~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~----------y-s~~--------- 155 (1081)
T KOG0309|consen 103 SNA-------IEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPF----------Y-STS--------- 155 (1081)
T ss_pred ccc-------eEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCcce----------e-eee---------
Confidence 432 2456789999999999999999999999999999999999986331 0 010
Q ss_pred cCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCccccCCCCCCCCccccccccccccCCccccceEEEEEc
Q 004477 209 ADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFS 288 (751)
Q Consensus 209 ~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~vt~v~fs 288 (751)
.-......++|+-.+++.+| .+..+.|++||.|.+... .|.. .+|.. .|+++.|.
T Consensus 156 ----~w~s~asqVkwnyk~p~vla-sshg~~i~vwd~r~gs~p----------l~s~---------K~~vs-~vn~~~fn 210 (1081)
T KOG0309|consen 156 ----SWRSAASQVKWNYKDPNVLA-SSHGNDIFVWDLRKGSTP----------LCSL---------KGHVS-SVNSIDFN 210 (1081)
T ss_pred ----cccccCceeeecccCcchhh-hccCCceEEEeccCCCcc----------eEEe---------cccce-eeehHHHh
Confidence 11234566788887666555 466778999999976521 1110 22333 37777777
Q ss_pred C-CCCEEEEEeCCCcEEEEECCCCCcce-eeeecCCCceeEEeCCCCCCcccCCCc
Q 004477 289 P-NGEEVLLSYSGEHVYLMDVNHAGGRA-MRYTVGDASKIMSFTPTLNGLELQPPI 342 (751)
Q Consensus 289 p-dg~~Ll~~s~d~~I~lwdl~~~~~~~-~~~~~~~~~~~~~~sp~~~~~~~~~~~ 342 (751)
. ....+++++.|++|+.||........ .......++...+|-|...+.-..+..
T Consensus 211 r~~~s~~~s~~~d~tvkfw~y~kSt~e~~~~vtt~~piw~~r~~Pfg~g~~~mp~~ 266 (1081)
T KOG0309|consen 211 RFKYSEIMSSSNDGTVKFWDYSKSTTESKRTVTTNFPIWRGRYLPFGEGYCIMPMV 266 (1081)
T ss_pred hhhhhhhcccCCCCceeeecccccccccceeccccCcceeccccccCceeEecccc
Confidence 5 44568899999999999998765333 334445566667777777776555443
No 256
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=98.74 E-value=2e-06 Score=83.86 Aligned_cols=211 Identities=13% Similarity=0.056 Sum_probs=139.7
Q ss_pred EEEECC-----CCCEEEEEeCCCcEEEEeCCCCeEEEEecccCCcceEEEEEecCCCCcEEEEEECCCcEEEEECCCCCC
Q 004477 55 AISWNS-----KGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSG 129 (751)
Q Consensus 55 ~l~~s~-----dg~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~Dg~V~vwd~~~~~~ 129 (751)
.|.|-| ...+||.|+.-|...+|.+.+......+...|...|.-++=.-+. -.-+..++.|.++++.++.....
T Consensus 72 g~~F~p~s~~~kc~~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~v~~~~r~cd~-~~~~~i~sndht~k~~~~~~~s~ 150 (344)
T KOG4532|consen 72 GMTFTPGSFINKCVTLADGGASGQFDLFACNTNDGHLYQCDVSNNDVTLVKRYCDL-KFPLNIASNDHTGKTMVVSGDSN 150 (344)
T ss_pred cccccchHhhccccEEEeccccceeeeecccCcccceeeecccccchhhhhhhccc-ccceeeccCCcceeEEEEecCcc
Confidence 456665 345899999999999999987655444434555544443322221 23466678999999999986422
Q ss_pred CCCCCCCCCCceeecccCC--ceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCCCCCCCCCCccceEEEecccCceec
Q 004477 130 RGLDDNAITPSALYQCHTR--RVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRS 207 (751)
Q Consensus 130 ~~~~~~~~~~~~~~~~h~~--~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 207 (751)
.+.-|.. .+.++++++ ++.++++.+....|..|.+...... ..+ +.
T Consensus 151 ------------~~~~h~~~~~~ns~~~sn-d~~~~~~Vgds~~Vf~y~id~~sey---------~~~-~~--------- 198 (344)
T KOG4532|consen 151 ------------KFAVHNQNLTQNSLHYSN-DPSWGSSVGDSRRVFRYAIDDESEY---------IEN-IY--------- 198 (344)
T ss_pred ------------cceeeccccceeeeEEcC-CCceEEEecCCCcceEEEeCCccce---------eee-eE---------
Confidence 1222333 378999999 7789999999999999988764311 000 00
Q ss_pred ccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCccccCCCCCCCCccccccccccccCCccccceEEEEE
Q 004477 208 LADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTF 287 (751)
Q Consensus 208 ~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~vt~v~f 287 (751)
.......-.+.+|+.. ...+|++..||++.|||+|......... ...+.|+.+.+..+.|
T Consensus 199 ---~a~t~D~gF~~S~s~~-~~~FAv~~Qdg~~~I~DVR~~~tpm~~~----------------sstrp~hnGa~R~c~F 258 (344)
T KOG4532|consen 199 ---EAPTSDHGFYNSFSEN-DLQFAVVFQDGTCAIYDVRNMATPMAEI----------------SSTRPHHNGAFRVCRF 258 (344)
T ss_pred ---ecccCCCceeeeeccC-cceEEEEecCCcEEEEEecccccchhhh----------------cccCCCCCCceEEEEe
Confidence 0012234457788884 6899999999999999999764221110 0112344557999999
Q ss_pred cCCCC--EEEEEeCCCcEEEEECCCCCcceeee
Q 004477 288 SPNGE--EVLLSYSGEHVYLMDVNHAGGRAMRY 318 (751)
Q Consensus 288 spdg~--~Ll~~s~d~~I~lwdl~~~~~~~~~~ 318 (751)
++-|. .|+.+-.-+.+.|-|+++.....+..
T Consensus 259 sl~g~lDLLf~sEhfs~~hv~D~R~~~~~q~I~ 291 (344)
T KOG4532|consen 259 SLYGLLDLLFISEHFSRVHVVDTRNYVNHQVIV 291 (344)
T ss_pred cCCCcceEEEEecCcceEEEEEcccCceeeEEe
Confidence 98764 46666667899999999976555444
No 257
>PRK00178 tolB translocation protein TolB; Provisional
Probab=98.70 E-value=1.2e-06 Score=97.78 Aligned_cols=202 Identities=10% Similarity=0.055 Sum_probs=119.8
Q ss_pred cEEEEeCCCCeEEEEecccCCcceEEEEEecCCCCcEEEEEECC---CcEEEEECCCCCCCCCCCCCCCCceeecccCCc
Q 004477 73 HINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGD---AEVRLFNLSRFSGRGLDDNAITPSALYQCHTRR 149 (751)
Q Consensus 73 ~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~D---g~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~ 149 (751)
.|.++|...+. ...+ ..+...+...+|+|+ |+.|+..+.+ ..|.+||+.++.. ..+....+.
T Consensus 180 ~l~~~d~~g~~-~~~l-~~~~~~~~~p~wSpD--G~~la~~s~~~~~~~l~~~~l~~g~~-----------~~l~~~~g~ 244 (430)
T PRK00178 180 TLQRSDYDGAR-AVTL-LQSREPILSPRWSPD--GKRIAYVSFEQKRPRIFVQNLDTGRR-----------EQITNFEGL 244 (430)
T ss_pred EEEEECCCCCC-ceEE-ecCCCceeeeeECCC--CCEEEEEEcCCCCCEEEEEECCCCCE-----------EEccCCCCC
Confidence 47777876443 3445 467788999999999 7887766543 3688999986421 222223344
Q ss_pred eeEEEEecCCCCEEEEEeCCC--cEEEEecCCCCCCCCCCCCCCccceEEEecccCceecccCCCCCccceEEEEEeCCC
Q 004477 150 VKKLAVEVGNPHVVWSASEDG--TLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTR 227 (751)
Q Consensus 150 V~~l~~sp~~~~~l~s~s~Dg--~I~iwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~ 227 (751)
+...+|+|++..++++.+.+| .|.+||+.++... .+.. +........|+|+
T Consensus 245 ~~~~~~SpDG~~la~~~~~~g~~~Iy~~d~~~~~~~-----------------------~lt~---~~~~~~~~~~spD- 297 (430)
T PRK00178 245 NGAPAWSPDGSKLAFVLSKDGNPEIYVMDLASRQLS-----------------------RVTN---HPAIDTEPFWGKD- 297 (430)
T ss_pred cCCeEECCCCCEEEEEEccCCCceEEEEECCCCCeE-----------------------Eccc---CCCCcCCeEECCC-
Confidence 556899995544555666666 5777788775421 0100 1123445689996
Q ss_pred CcEEEEEe-CCC--eEEEEeCCCCCCccccCCCCCCCCccccccccccccCCccccceEEEEEcCCCCEEEEEeCC-C--
Q 004477 228 PHLLLVGG-SDA--FARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSG-E-- 301 (751)
Q Consensus 228 ~~~l~sgs-~D~--~IriwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~vt~v~fspdg~~Ll~~s~d-~-- 301 (751)
++.|+..+ .++ .|.++|+..++... .. . .+. ......|+|||++|+..+.. +
T Consensus 298 g~~i~f~s~~~g~~~iy~~d~~~g~~~~--------------lt---~--~~~---~~~~~~~Spdg~~i~~~~~~~~~~ 355 (430)
T PRK00178 298 GRTLYFTSDRGGKPQIYKVNVNGGRAER--------------VT---F--VGN---YNARPRLSADGKTLVMVHRQDGNF 355 (430)
T ss_pred CCEEEEEECCCCCceEEEEECCCCCEEE--------------ee---c--CCC---CccceEECCCCCEEEEEEccCCce
Confidence 55554444 343 56667765543110 00 0 011 13457899999999877653 2
Q ss_pred cEEEEECCCCCcceeeeecCCCceeEEeCCCCCCcccCC
Q 004477 302 HVYLMDVNHAGGRAMRYTVGDASKIMSFTPTLNGLELQP 340 (751)
Q Consensus 302 ~I~lwdl~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~ 340 (751)
.|++||+.++....+ . .........|+|+...+.+..
T Consensus 356 ~l~~~dl~tg~~~~l-t-~~~~~~~p~~spdg~~i~~~~ 392 (430)
T PRK00178 356 HVAAQDLQRGSVRIL-T-DTSLDESPSVAPNGTMLIYAT 392 (430)
T ss_pred EEEEEECCCCCEEEc-c-CCCCCCCceECCCCCEEEEEE
Confidence 689999988643222 2 222333557888877766553
No 258
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.68 E-value=9.1e-08 Score=100.88 Aligned_cols=172 Identities=19% Similarity=0.250 Sum_probs=124.1
Q ss_pred EEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCC-------CeEEEEecccCCcceEEEEEecCCCCcEEEEEECC
Q 004477 44 RELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSS-------RKLLHSIETGHSANVFCTKFVPETSDELVVSGAGD 116 (751)
Q Consensus 44 ~~L~gH~~~V~~l~~s~dg~~LaSgs~Dg~I~IWd~~~-------~~~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~D 116 (751)
..+.||+..|..+.--.+.+-++++|.|++|++|.++. ..+..++ +.|+.+|.++.|..+ .++++++ |
T Consensus 729 ~nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY-~aHkk~i~~igfL~~--lr~i~Sc--D 803 (1034)
T KOG4190|consen 729 CNFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTY-QAHKKPIHDIGFLAD--LRSIASC--D 803 (1034)
T ss_pred ecccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEh-hhccCcccceeeeec--cceeeec--c
Confidence 45789999999998888888999999999999999763 2355566 899999999999988 5777765 8
Q ss_pred CcEEEEECCCCCCCCCCCCCCCCceee-----cccCCceeEEEEecCCCCEEEE-EeCCCcEEEEecCCCCCCCCCCCCC
Q 004477 117 AEVRLFNLSRFSGRGLDDNAITPSALY-----QCHTRRVKKLAVEVGNPHVVWS-ASEDGTLRQHDFRQGSSCPPAGSSH 190 (751)
Q Consensus 117 g~V~vwd~~~~~~~~~~~~~~~~~~~~-----~~h~~~V~~l~~sp~~~~~l~s-~s~Dg~I~iwDlr~~~~~~~~~~~~ 190 (751)
+-|.+||.-.+ .++... .+-.+.|+++.- - +.++++. |+...+|+++|.|...-.
T Consensus 804 ~giHlWDPFig----------r~Laq~~dapk~~a~~~ikcl~n-v-~~~iliAgcsaeSTVKl~DaRsce~~------- 864 (1034)
T KOG4190|consen 804 GGIHLWDPFIG----------RLLAQMEDAPKEGAGGNIKCLEN-V-DRHILIAGCSAESTVKLFDARSCEWT------- 864 (1034)
T ss_pred Ccceeeccccc----------chhHhhhcCcccCCCceeEeccc-C-cchheeeeccchhhheeeecccccce-------
Confidence 99999998743 222211 122334555421 1 3444444 478899999999986521
Q ss_pred CccceEEEecccCceecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCccc
Q 004477 191 QECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTS 253 (751)
Q Consensus 191 ~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~~~ 253 (751)
|.. .+...++...-+.++++.| .+++++++-..|.|.+.|.|+++.+.+
T Consensus 865 --~E~-----------kVcna~~Pna~~R~iaVa~-~GN~lAa~LSnGci~~LDaR~G~vINs 913 (1034)
T KOG4190|consen 865 --CEL-----------KVCNAPGPNALTRAIAVAD-KGNKLAAALSNGCIAILDARNGKVINS 913 (1034)
T ss_pred --eeE-----------EeccCCCCchheeEEEecc-CcchhhHHhcCCcEEEEecCCCceecc
Confidence 110 1222333456688999999 589999999999999999999875543
No 259
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=98.67 E-value=6.3e-08 Score=105.48 Aligned_cols=141 Identities=19% Similarity=0.271 Sum_probs=109.0
Q ss_pred ccccchhhhccccccEEeccCCCcEEEEEECCCC-CEEEEEeCCCcEEEEeCCCCe-EEEEecccCCcceEEEEEecCCC
Q 004477 29 SLQMHSSLVRRLSQERELEGHQGCVNAISWNSKG-SLLISGSDDTHINVWSYSSRK-LLHSIETGHSANVFCTKFVPETS 106 (751)
Q Consensus 29 ~l~~~~~~i~~~~~~~~L~gH~~~V~~l~~s~dg-~~LaSgs~Dg~I~IWd~~~~~-~~~~l~~~h~~~V~~v~fsp~s~ 106 (751)
.+-.+-..-..-.....|.||+..|+.+.|+|.. ..||+++.|..|..||+.+.. .+..+ ..-......|+|+-..
T Consensus 93 aiiwnlA~ss~~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~-~~w~s~asqVkwnyk~- 170 (1081)
T KOG0309|consen 93 AIIWNLAKSSSNAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYST-SSWRSAASQVKWNYKD- 170 (1081)
T ss_pred hhhhhhhcCCccceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCcceeee-ecccccCceeeecccC-
Confidence 3333333344445667889999999999999954 599999999999999998653 44444 3344567889999873
Q ss_pred CcEEEEEECCCcEEEEECCCCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCC
Q 004477 107 DELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGS 181 (751)
Q Consensus 107 ~~~l~sgs~Dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~ 181 (751)
..+...+....|+|||.+.+. .++..+++|...|+.++|....-..+++++.||+|+.||.....
T Consensus 171 -p~vlasshg~~i~vwd~r~gs---------~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt 235 (1081)
T KOG0309|consen 171 -PNVLASSHGNDIFVWDLRKGS---------TPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKST 235 (1081)
T ss_pred -cchhhhccCCceEEEeccCCC---------cceEEecccceeeehHHHhhhhhhhhcccCCCCceeeecccccc
Confidence 344445677889999999763 67889999999999999986555678899999999999988754
No 260
>PRK04792 tolB translocation protein TolB; Provisional
Probab=98.67 E-value=2e-06 Score=95.99 Aligned_cols=201 Identities=7% Similarity=0.035 Sum_probs=114.9
Q ss_pred cEEEEeCCCCeEEEEecccCCcceEEEEEecCCCCcEEEEEEC-CC--cEEEEECCCCCCCCCCCCCCCCceeecccCCc
Q 004477 73 HINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAG-DA--EVRLFNLSRFSGRGLDDNAITPSALYQCHTRR 149 (751)
Q Consensus 73 ~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~-Dg--~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~ 149 (751)
.|.++|...... ..+ ..+...+.+..|+|+ |+.|+..+. ++ .|.+||+..+.. ..+..+ .+.
T Consensus 199 ~l~i~d~dG~~~-~~l-~~~~~~~~~p~wSPD--G~~La~~s~~~g~~~L~~~dl~tg~~--------~~lt~~---~g~ 263 (448)
T PRK04792 199 QLMIADYDGYNE-QML-LRSPEPLMSPAWSPD--GRKLAYVSFENRKAEIFVQDIYTQVR--------EKVTSF---PGI 263 (448)
T ss_pred EEEEEeCCCCCc-eEe-ecCCCcccCceECCC--CCEEEEEEecCCCcEEEEEECCCCCe--------EEecCC---CCC
Confidence 577778654433 344 566788999999999 777776543 33 588888875421 112222 233
Q ss_pred eeEEEEecCCCCEEEEEeCCCc--EEEEecCCCCCCCCCCCCCCccceEEEecccCceecccCCCCCccceEEEEEeCCC
Q 004477 150 VKKLAVEVGNPHVVWSASEDGT--LRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTR 227 (751)
Q Consensus 150 V~~l~~sp~~~~~l~s~s~Dg~--I~iwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~ 227 (751)
....+|+|++..++++.+.+|. |.++|+.+++.. .+.. +.......+|+|+
T Consensus 264 ~~~~~wSPDG~~La~~~~~~g~~~Iy~~dl~tg~~~-----------------------~lt~---~~~~~~~p~wSpD- 316 (448)
T PRK04792 264 NGAPRFSPDGKKLALVLSKDGQPEIYVVDIATKALT-----------------------RITR---HRAIDTEPSWHPD- 316 (448)
T ss_pred cCCeeECCCCCEEEEEEeCCCCeEEEEEECCCCCeE-----------------------ECcc---CCCCccceEECCC-
Confidence 4468999965556566777776 666777665411 0110 1223456789996
Q ss_pred CcEEEEEe-CCC--eEEEEeCCCCCCccccCCCCCCCCccccccccccccCCccccceEEEEEcCCCCEEEEEeC-CC--
Q 004477 228 PHLLLVGG-SDA--FARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYS-GE-- 301 (751)
Q Consensus 228 ~~~l~sgs-~D~--~IriwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~vt~v~fspdg~~Ll~~s~-d~-- 301 (751)
++.|+..+ .++ .|.++|+.+++... . ...+. .....+|+|||++|+..+. ++
T Consensus 317 G~~I~f~s~~~g~~~Iy~~dl~~g~~~~--------------L-----t~~g~---~~~~~~~SpDG~~l~~~~~~~g~~ 374 (448)
T PRK04792 317 GKSLIFTSERGGKPQIYRVNLASGKVSR--------------L-----TFEGE---QNLGGSITPDGRSMIMVNRTNGKF 374 (448)
T ss_pred CCEEEEEECCCCCceEEEEECCCCCEEE--------------E-----ecCCC---CCcCeeECCCCCEEEEEEecCCce
Confidence 55555444 344 46666765543110 0 00111 1234689999999887655 33
Q ss_pred cEEEEECCCCCcceeeeecCCCceeEEeCCCCCCcccC
Q 004477 302 HVYLMDVNHAGGRAMRYTVGDASKIMSFTPTLNGLELQ 339 (751)
Q Consensus 302 ~I~lwdl~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~ 339 (751)
.|+++|+.++.... .. .........|+|+...+.+.
T Consensus 375 ~I~~~dl~~g~~~~-lt-~~~~d~~ps~spdG~~I~~~ 410 (448)
T PRK04792 375 NIARQDLETGAMQV-LT-STRLDESPSVAPNGTMVIYS 410 (448)
T ss_pred EEEEEECCCCCeEE-cc-CCCCCCCceECCCCCEEEEE
Confidence 56777887754322 22 22223345688877766554
No 261
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.67 E-value=1.1e-07 Score=88.85 Aligned_cols=123 Identities=28% Similarity=0.296 Sum_probs=105.8
Q ss_pred cchhHHHHHHHHHhhhcCCChhHHHHHhHHHHhcccCCCCCchhhhhHhHHHHHhhc-ccccchhhhHHHhhHHHhcCCC
Q 004477 360 LGKCRMLVEIARNSLEEGKHPYYGIEACNEVLEGHLSGIGPMLRHECLCIRAALLLK-RKWKNDAQMAIRDCYNARRIDS 438 (751)
Q Consensus 360 ~~~~~~l~~~~~~~~~~g~~~~~ai~~~~~~i~~~~~~~~~~~~~~~~~~ra~~~~~-r~w~~d~y~al~d~~~a~~~~~ 438 (751)
...+-.|+..++..+.+|. |-.|...|..+|..++.... ..+..||+|||+++++ ++|. +|+.||-+|++|+|
T Consensus 92 ~~kad~lK~EGN~~F~ngd-yeeA~skY~~Ale~cp~~~~-e~rsIly~Nraaa~iKl~k~e----~aI~dcsKaiel~p 165 (271)
T KOG4234|consen 92 IEKADSLKKEGNELFKNGD-YEEANSKYQEALESCPSTST-EERSILYSNRAAALIKLRKWE----SAIEDCSKAIELNP 165 (271)
T ss_pred HHHHHHHHHHHHHhhhccc-HHHHHHHHHHHHHhCccccH-HHHHHHHhhhHHHHHHhhhHH----HHHHHHHhhHhcCc
Confidence 3445678888999999998 88999999999999987644 5678899999999996 5574 78999999999999
Q ss_pred CCcchHHHHHHHHHHhcchHHHHHHHHHhcccCCCChhhhHHHHHHHHHH
Q 004477 439 SSFRAHLYMSEALEQLCKYKEALDFAIAAQCLDPSNSVMAEKVENIKKHI 488 (751)
Q Consensus 439 ~~~~a~~~~~~~l~~l~~~~~a~~~~~~~~~~~p~~~~~~~~~~~~~~~~ 488 (751)
.+.||..|.+.++..+.++.+|++-..++....|+.....+++..|...+
T Consensus 166 ty~kAl~RRAeayek~ek~eealeDyKki~E~dPs~~ear~~i~rl~~~i 215 (271)
T KOG4234|consen 166 TYEKALERRAEAYEKMEKYEEALEDYKKILESDPSRREAREAIARLPPKI 215 (271)
T ss_pred hhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCcchHHHHHHHHhcCHHH
Confidence 99999999999999999999999999999999998887777776664444
No 262
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=98.66 E-value=2e-07 Score=90.24 Aligned_cols=170 Identities=15% Similarity=0.131 Sum_probs=109.5
Q ss_pred cccEEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCe-EEEEecccCCcceEEEEEecCCCCcEEEEEEC----
Q 004477 41 SQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRK-LLHSIETGHSANVFCTKFVPETSDELVVSGAG---- 115 (751)
Q Consensus 41 ~~~~~L~gH~~~V~~l~~s~dg~~LaSgs~Dg~I~IWd~~~~~-~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~---- 115 (751)
.+.+++..|++.=.+-..+-.++.++++..||.+.+.+.+.-. ....+...|.+ -.+.+.... +.+|.++..
T Consensus 80 ~~~~~~a~~sep~p~~~~s~~~t~V~~~~~dg~~~v~s~~~~~~~~~~i~~~~~~-~as~~~~~~--~~~i~s~~~g~~n 156 (319)
T KOG4714|consen 80 DPFKVLAKNSEIDPNDACTMTDNRVCIGYADGSLAVFSTDKDLALMSRIPSIHSG-SASRKICRH--GNSILSGGCGNWN 156 (319)
T ss_pred CceeeeeccCCCCCcccccccCCceEecCCCceEEEEechHHHhhhhhccccccc-ccccceeec--ccEEecCCcceEe
Confidence 4445555555544444444467889999999999999976421 11222122322 334444444 455554422
Q ss_pred -CCcEEEEECCCCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCCCCCCCCCCccc
Q 004477 116 -DAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECR 194 (751)
Q Consensus 116 -Dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~~~~~~~~~~ 194 (751)
-+..+.|+++.. +.+.....-...|.+++-+|...+++++|+.||.+-+||.|....+
T Consensus 157 ~~d~~~a~~~~p~----------~t~~~~~~~~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p----------- 215 (319)
T KOG4714|consen 157 AQDNFYANTLDPI----------KTLIPSKKALDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMP----------- 215 (319)
T ss_pred eccceeeeccccc----------ccccccccccccchhhhCCcccccEEEEecCCCeEEEEEcccccch-----------
Confidence 123445555421 0011111122349999999977789999999999999999986422
Q ss_pred eEEEecccCceecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCC
Q 004477 195 NILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRM 247 (751)
Q Consensus 195 ~~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~ 247 (751)
......|+.++..+-|+|.++..|++++.||.+..||..+
T Consensus 216 -------------~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wdas~ 255 (319)
T KOG4714|consen 216 -------------VSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDAST 255 (319)
T ss_pred -------------HHHHHHhhhhhhheeccCCCchheeEecCCCcEEEEcCCC
Confidence 2223347889999999999999999999999999999874
No 263
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=98.64 E-value=6.8e-06 Score=86.92 Aligned_cols=224 Identities=13% Similarity=0.162 Sum_probs=141.3
Q ss_pred CCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEecccCCcceEEEEEecCCCCcEEEEEECCC-----------
Q 004477 49 HQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDA----------- 117 (751)
Q Consensus 49 H~~~V~~l~~s~dg~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~Dg----------- 117 (751)
-.-+|..++|||.|.+|++...- .|.+|....+..+..+ .| ..|..+.|+|. +.+|+|=+...
T Consensus 31 ~~~p~~~~~~SP~G~~l~~~~~~-~V~~~~g~~~~~l~~~--~~-~~V~~~~fSP~--~kYL~tw~~~pi~~pe~e~sp~ 104 (561)
T COG5354 31 ENWPVAYVSESPLGTYLFSEHAA-GVECWGGPSKAKLVRF--RH-PDVKYLDFSPN--EKYLVTWSREPIIEPEIEISPF 104 (561)
T ss_pred cCcchhheeecCcchheehhhcc-ceEEccccchhheeee--ec-CCceecccCcc--cceeeeeccCCccChhhccCCc
Confidence 45678999999999999998765 5999998877766666 24 45999999999 89999876544
Q ss_pred ----cEEEEECCCCCCCCCCCCCCCCceeecccCCc--ee-EEEEecCCCCEEEEEeCCCcEEEEecCCCCCCCCCCCCC
Q 004477 118 ----EVRLFNLSRFSGRGLDDNAITPSALYQCHTRR--VK-KLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSH 190 (751)
Q Consensus 118 ----~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~--V~-~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~~~~~~ 190 (751)
.+.|||+.++ ..+..+..-..+ .+ -+.|+-++ .+++-- -...+.++++ +.....
T Consensus 105 ~~~n~~~vwd~~sg----------~iv~sf~~~~q~~~~Wp~~k~s~~D-~y~ARv-v~~sl~i~e~-t~n~~~------ 165 (561)
T COG5354 105 TSKNNVFVWDIASG----------MIVFSFNGISQPYLGWPVLKFSIDD-KYVARV-VGSSLYIHEI-TDNIEE------ 165 (561)
T ss_pred cccCceeEEeccCc----------eeEeeccccCCcccccceeeeeecc-hhhhhh-ccCeEEEEec-CCcccc------
Confidence 4899999865 334555544444 34 56777744 444333 2346888887 332110
Q ss_pred CccceEEEecccCceecccCCCCCccceEEEEEeCC-CCcEEE-----EEeCCCeEEEEeCCCCCCccccCCCCCCCCcc
Q 004477 191 QECRNILLDLRCGAKRSLADPPKQTLSLKSCDISST-RPHLLL-----VGGSDAFARLYDRRMLPPLTSCQKRMSPPPCV 264 (751)
Q Consensus 191 ~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~-~~~~l~-----sgs~D~~IriwD~~~~~~~~~~~~~~~~~~~~ 264 (751)
+.. .......+....|+|. ++..|+ ..+.++.++||.+...+.+..
T Consensus 166 ------------~p~-----~~lr~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~t----------- 217 (561)
T COG5354 166 ------------HPF-----KNLRPVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVT----------- 217 (561)
T ss_pred ------------Cch-----hhccccceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeee-----------
Confidence 000 0001235666777774 222233 246778899998875443321
Q ss_pred ccccccccccCCccccceEEEEEcCCCCEEEEEeC-----------CCcEEEEECCCCCcceeeeecCCCceeEEeCCCC
Q 004477 265 NYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYS-----------GEHVYLMDVNHAGGRAMRYTVGDASKIMSFTPTL 333 (751)
Q Consensus 265 ~~~~~~~~~~~g~~~~~vt~v~fspdg~~Ll~~s~-----------d~~I~lwdl~~~~~~~~~~~~~~~~~~~~~sp~~ 333 (751)
+.+ .. . .=..+.|.+.|++|++-.. ...++|+++.. ....+.....+++..++|.|..
T Consensus 218 k~l-----fk---~--~~~qLkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e-~~i~V~~~~~~pVhdf~W~p~S 286 (561)
T COG5354 218 KNL-----FK---V--SGVQLKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRITE-RSIPVEKDLKDPVHDFTWEPLS 286 (561)
T ss_pred eee-----Ee---e--cccEEEEecCCceEEEEEEEeeecccceeccceEEEEeecc-cccceeccccccceeeeecccC
Confidence 111 00 0 1245889999998775421 35689999985 3333443557888899999987
Q ss_pred CCc
Q 004477 334 NGL 336 (751)
Q Consensus 334 ~~~ 336 (751)
++.
T Consensus 287 ~~F 289 (561)
T COG5354 287 SRF 289 (561)
T ss_pred Cce
Confidence 654
No 264
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.63 E-value=7.4e-08 Score=67.65 Aligned_cols=38 Identities=39% Similarity=0.834 Sum_probs=36.6
Q ss_pred cccEEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEe
Q 004477 41 SQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWS 78 (751)
Q Consensus 41 ~~~~~L~gH~~~V~~l~~s~dg~~LaSgs~Dg~I~IWd 78 (751)
+++++|++|.+.|++|+|+|++++|+||+.|++|+|||
T Consensus 2 ~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 2 KCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred eEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 57889999999999999999999999999999999997
No 265
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=98.59 E-value=1.9e-06 Score=92.76 Aligned_cols=192 Identities=17% Similarity=0.180 Sum_probs=137.9
Q ss_pred CCCCCEEEEEeCCCcEEEEeCCCCeEEEEecc-c-CCcceEEEEEe------cC------------CCCcEEEEEECCCc
Q 004477 59 NSKGSLLISGSDDTHINVWSYSSRKLLHSIET-G-HSANVFCTKFV------PE------------TSDELVVSGAGDAE 118 (751)
Q Consensus 59 s~dg~~LaSgs~Dg~I~IWd~~~~~~~~~l~~-~-h~~~V~~v~fs------p~------------s~~~~l~sgs~Dg~ 118 (751)
.|.+.++|....||.++||+...++....+.. . -.+.-.+.+|. |- .+-..++-|-..|.
T Consensus 2 ~~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~ 81 (541)
T KOG4547|consen 2 PPALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGS 81 (541)
T ss_pred CchhheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCcc
Confidence 35567999999999999999998887766621 1 13344444443 21 01246777888899
Q ss_pred EEEEECCCCCCCCCCCCCCCCceee--cccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCCCCCCCCCCccceE
Q 004477 119 VRLFNLSRFSGRGLDDNAITPSALY--QCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNI 196 (751)
Q Consensus 119 V~vwd~~~~~~~~~~~~~~~~~~~~--~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~~~~~~~~~~~~ 196 (751)
|.++++..+ +....+ .+|.+.|.++.++. .-..|-|++.|+.+.+|+.......
T Consensus 82 v~~ys~~~g----------~it~~~st~~h~~~v~~~~~~~-~~~ciyS~~ad~~v~~~~~~~~~~~------------- 137 (541)
T KOG4547|consen 82 VLLYSVAGG----------EITAKLSTDKHYGNVNEILDAQ-RLGCIYSVGADLKVVYILEKEKVII------------- 137 (541)
T ss_pred EEEEEecCC----------eEEEEEecCCCCCcceeeeccc-ccCceEecCCceeEEEEecccceee-------------
Confidence 999999864 223333 57999999999887 5578889999999999998876521
Q ss_pred EEecccCceecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCccccCCCCCCCCccccccccccccCC
Q 004477 197 LLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHG 276 (751)
Q Consensus 197 l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 276 (751)
.........+.+++++|+ +..+++++ +.|++||+.+.+.+.. | .|
T Consensus 138 ------------~~~~~~~~~~~sl~is~D-~~~l~~as--~~ik~~~~~~kevv~~-------------f-------tg 182 (541)
T KOG4547|consen 138 ------------RIWKEQKPLVSSLCISPD-GKILLTAS--RQIKVLDIETKEVVIT-------------F-------TG 182 (541)
T ss_pred ------------eeeccCCCccceEEEcCC-CCEEEecc--ceEEEEEccCceEEEE-------------e-------cC
Confidence 111123456788999995 78888876 5899999998764433 3 45
Q ss_pred ccccceEEEEEcCC-----CCEEEEEeC-CCcEEEEECCC
Q 004477 277 RSSLHLTHVTFSPN-----GEEVLLSYS-GEHVYLMDVNH 310 (751)
Q Consensus 277 ~~~~~vt~v~fspd-----g~~Ll~~s~-d~~I~lwdl~~ 310 (751)
|.+ +|.++.|--+ |.+++++.. +..|.+|-+..
T Consensus 183 h~s-~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~ 221 (541)
T KOG4547|consen 183 HGS-PVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEK 221 (541)
T ss_pred CCc-ceEEEEEEEeccccccceeeeccccccceeEEEEEc
Confidence 555 6999999887 888887765 66777776665
No 266
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=98.59 E-value=1.2e-05 Score=98.12 Aligned_cols=243 Identities=12% Similarity=0.128 Sum_probs=138.4
Q ss_pred EEEEEECCCCCEEEEEe-CCCcEEEEeCCCCeEEEEecc-cC---------------CcceEEEEEecCCCCcEEEEEEC
Q 004477 53 VNAISWNSKGSLLISGS-DDTHINVWSYSSRKLLHSIET-GH---------------SANVFCTKFVPETSDELVVSGAG 115 (751)
Q Consensus 53 V~~l~~s~dg~~LaSgs-~Dg~I~IWd~~~~~~~~~l~~-~h---------------~~~V~~v~fsp~s~~~~l~sgs~ 115 (751)
...|+++++++.|..+. ..+.|+++|..++.. .++.. +. -..-..|+|+|+. +.++++.+.
T Consensus 626 P~GIavd~~gn~LYVaDt~n~~Ir~id~~~~~V-~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~-g~LyVad~~ 703 (1057)
T PLN02919 626 PQGLAYNAKKNLLYVADTENHALREIDFVNETV-RTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVN-EKVYIAMAG 703 (1057)
T ss_pred CcEEEEeCCCCEEEEEeCCCceEEEEecCCCEE-EEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCC-CeEEEEECC
Confidence 57889999888655544 456799999877643 33311 10 1134689999953 678888888
Q ss_pred CCcEEEEECCCCCCCCCCCCCCCCceeecc------cCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCCCCCCCC
Q 004477 116 DAEVRLFNLSRFSGRGLDDNAITPSALYQC------HTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSS 189 (751)
Q Consensus 116 Dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~------h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~~~~~ 189 (751)
++.|++||...+........ .. .....+ .-.....|+++|++..++++-+.++.|++||+.++.........
T Consensus 704 ~~~I~v~d~~~g~v~~~~G~-G~-~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~ 781 (1057)
T PLN02919 704 QHQIWEYNISDGVTRVFSGD-GY-ERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGD 781 (1057)
T ss_pred CCeEEEEECCCCeEEEEecC-Cc-cccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecc
Confidence 99999999875321100000 00 000001 12345679999966558888888999999999875421000000
Q ss_pred CCccceEEEecccCceecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCccccCCCCCCCCccccccc
Q 004477 190 HQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCP 269 (751)
Q Consensus 190 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (751)
.... ..+........ ... .........++++++ +.++++-..++.|++||..+.......... . ..+..
T Consensus 782 ~~~~-~~l~~fG~~dG--~g~-~~~l~~P~Gvavd~d-G~LYVADs~N~rIrviD~~tg~v~tiaG~G-~-----~G~~d 850 (1057)
T PLN02919 782 PTFS-DNLFKFGDHDG--VGS-EVLLQHPLGVLCAKD-GQIYVADSYNHKIKKLDPATKRVTTLAGTG-K-----AGFKD 850 (1057)
T ss_pred cccC-cccccccCCCC--chh-hhhccCCceeeEeCC-CcEEEEECCCCEEEEEECCCCeEEEEeccC-C-----cCCCC
Confidence 0000 00000000000 000 001123457899995 678888889999999999765432211100 0 00000
Q ss_pred cccccCCccccceEEEEEcCCCCEEEEEeCCCcEEEEECCCCC
Q 004477 270 MHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAG 312 (751)
Q Consensus 270 ~~~~~~g~~~~~vt~v~fspdg~~Ll~~s~d~~I~lwdl~~~~ 312 (751)
+.. ..+.- .....|+++++|+.+++.+.++.|++||+.++.
T Consensus 851 G~~-~~a~l-~~P~GIavd~dG~lyVaDt~Nn~Irvid~~~~~ 891 (1057)
T PLN02919 851 GKA-LKAQL-SEPAGLALGENGRLFVADTNNSLIRYLDLNKGE 891 (1057)
T ss_pred Ccc-ccccc-CCceEEEEeCCCCEEEEECCCCEEEEEECCCCc
Confidence 000 00111 136789999999988888899999999998854
No 267
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=98.59 E-value=8.4e-07 Score=91.28 Aligned_cols=162 Identities=16% Similarity=0.172 Sum_probs=111.4
Q ss_pred CcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCe----EEEEecccCCcceEEEEEecCCCCcEEEE---EECCCcEEEEE
Q 004477 51 GCVNAISWNSKGSLLISGSDDTHINVWSYSSRK----LLHSIETGHSANVFCTKFVPETSDELVVS---GAGDAEVRLFN 123 (751)
Q Consensus 51 ~~V~~l~~s~dg~~LaSgs~Dg~I~IWd~~~~~----~~~~l~~~h~~~V~~v~fsp~s~~~~l~s---gs~Dg~V~vwd 123 (751)
..++.+..++++++||.+..++...+.++.... ++... .-...-+.+.|..+ ...+.. ++....+.+|.
T Consensus 63 ~a~~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~--~v~~~~~ai~~~~~--~~sv~v~dkagD~~~~di~s 138 (390)
T KOG3914|consen 63 LAPALVLTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVS--CVPKRPTAISFIRE--DTSVLVADKAGDVYSFDILS 138 (390)
T ss_pred ccccccccCCCceEEEEEeCCCceEEEEEecCCCcceeeeEe--ecccCcceeeeeec--cceEEEEeecCCceeeeeec
Confidence 345667788899999999888887777765332 22222 22333455555555 333333 34445555665
Q ss_pred CCCCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCCCCCCCCCCccceEEEecccC
Q 004477 124 LSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCG 203 (751)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~~~~~~~~~~~~l~~~~~~ 203 (751)
...+ +....-||-..++.++|+| ++.+++++..|..||+-..-....+
T Consensus 139 ~~~~-----------~~~~~lGhvSml~dVavS~-D~~~IitaDRDEkIRvs~ypa~f~I-------------------- 186 (390)
T KOG3914|consen 139 ADSG-----------RCEPILGHVSMLLDVAVSP-DDQFIITADRDEKIRVSRYPATFVI-------------------- 186 (390)
T ss_pred cccc-----------CcchhhhhhhhhheeeecC-CCCEEEEecCCceEEEEecCcccch--------------------
Confidence 5532 2345668999999999999 5688999999999998765543311
Q ss_pred ceecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCcccc
Q 004477 204 AKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSC 254 (751)
Q Consensus 204 ~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~~~~ 254 (751)
-...-+|...|..+++-++ +.|++|+.|++||+||+++++.+..+
T Consensus 187 ----esfclGH~eFVS~isl~~~--~~LlS~sGD~tlr~Wd~~sgk~L~t~ 231 (390)
T KOG3914|consen 187 ----ESFCLGHKEFVSTISLTDN--YLLLSGSGDKTLRLWDITSGKLLDTC 231 (390)
T ss_pred ----hhhccccHhheeeeeeccC--ceeeecCCCCcEEEEecccCCccccc
Confidence 1122348888999999873 67999999999999999999877554
No 268
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.54 E-value=8.4e-08 Score=106.31 Aligned_cols=231 Identities=16% Similarity=0.187 Sum_probs=156.6
Q ss_pred chHHHHHhhhccCcCc-ccccccccchhhhccccccEEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEE
Q 004477 9 GSIYDMLDTRHTDTRP-DVNHSLQMHSSLVRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHS 87 (751)
Q Consensus 9 ~~~~~~l~~r~~~~~~-~~~~~l~~~~~~i~~~~~~~~L~gH~~~V~~l~~s~dg~~LaSgs~Dg~I~IWd~~~~~~~~~ 87 (751)
-|++..+..|++-+.+ .++....-.....++++.+++++.|+...+|++|+-+.+.|+.|+-.|.|+++++.+|.....
T Consensus 1059 ~N~t~Rl~~rel~~~y~gV~g~~~dr~~IFSRFr~w~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s 1138 (1516)
T KOG1832|consen 1059 LNMTGRLGTRELQSFYSGVHGNRRDRQFIFSRFRSWRSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEES 1138 (1516)
T ss_pred hhhhhcccchhhcCcccccccCcccchhhHhhcccchhhhccccceeeEEeecCCceEEeeeccceEEEEEccCcccccc
Confidence 3555566666654432 233333333345688999999999999999999999999999999999999999999998888
Q ss_pred ecccCCcceEEEEEecCCCCcEEEEEECC-C-cEEEEECCCCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEE
Q 004477 88 IETGHSANVFCTKFVPETSDELVVSGAGD-A-EVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWS 165 (751)
Q Consensus 88 l~~~h~~~V~~v~fsp~s~~~~l~sgs~D-g-~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s 165 (751)
. .+|..+|+-|.=+.+ |..+++.+.- . -..+|++..- ..+.+.|.. -.++.|+.. ...-+.
T Consensus 1139 ~-ncH~SavT~vePs~d--gs~~Ltsss~S~PlsaLW~~~s~---------~~~~Hsf~e----d~~vkFsn~-~q~r~~ 1201 (1516)
T KOG1832|consen 1139 V-NCHQSAVTLVEPSVD--GSTQLTSSSSSSPLSALWDASST---------GGPRHSFDE----DKAVKFSNS-LQFRAL 1201 (1516)
T ss_pred c-cccccccccccccCC--cceeeeeccccCchHHHhccccc---------cCccccccc----cceeehhhh-HHHHHh
Confidence 8 899999999998887 6666654433 3 5789999852 134555543 346778763 233334
Q ss_pred EeCCCcEEEEecCCCCCCCCCCCCCCccceEEEecccCceecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeC
Q 004477 166 ASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDR 245 (751)
Q Consensus 166 ~s~Dg~I~iwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~ 245 (751)
|..-....+||+.++..+...... .......-++..|+|.+ .+++ +|| .+||+
T Consensus 1202 gt~~d~a~~YDvqT~~~l~tylt~---------------------~~~~~y~~n~a~FsP~D-~LIl---ndG--vLWDv 1254 (1516)
T KOG1832|consen 1202 GTEADDALLYDVQTCSPLQTYLTD---------------------TVTSSYSNNLAHFSPCD-TLIL---NDG--VLWDV 1254 (1516)
T ss_pred cccccceEEEecccCcHHHHhcCc---------------------chhhhhhccccccCCCc-ceEe---eCc--eeeee
Confidence 444457789999998765321111 00122333677899964 4544 455 38999
Q ss_pred CCCCCccccCCCCCCCCccccccccccccCCccccceEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 004477 246 RMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNH 310 (751)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~vt~v~fspdg~~Ll~~s~d~~I~lwdl~~ 310 (751)
|..+.+..+.. | .. --.-.|+|.|..++.++. |||+++
T Consensus 1255 R~~~aIh~FD~----------f---t~---------~~~G~FHP~g~eVIINSE-----IwD~RT 1292 (1516)
T KOG1832|consen 1255 RIPEAIHRFDQ----------F---TD---------YGGGGFHPSGNEVIINSE-----IWDMRT 1292 (1516)
T ss_pred ccHHHHhhhhh----------h---ee---------cccccccCCCceEEeech-----hhhhHH
Confidence 97654443311 1 00 112359999999999874 899988
No 269
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=98.54 E-value=3e-05 Score=83.73 Aligned_cols=230 Identities=14% Similarity=0.182 Sum_probs=137.2
Q ss_pred cccccEEeccCCCcEEEEEECCCCCEEEEEe-CCCcEEEEeCCC-CeEEEE--ecc----------cCCcceEEEEEecC
Q 004477 39 RLSQERELEGHQGCVNAISWNSKGSLLISGS-DDTHINVWSYSS-RKLLHS--IET----------GHSANVFCTKFVPE 104 (751)
Q Consensus 39 ~~~~~~~L~gH~~~V~~l~~s~dg~~LaSgs-~Dg~I~IWd~~~-~~~~~~--l~~----------~h~~~V~~v~fsp~ 104 (751)
+++.+.+..........++++|++++|+++. .+|.|.++++.. +..... +.. .-.....++.|+|+
T Consensus 75 ~L~~~~~~~~~g~~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pd 154 (345)
T PF10282_consen 75 TLTLLNSVPSGGSSPCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPD 154 (345)
T ss_dssp EEEEEEEEEESSSCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TT
T ss_pred eeEEeeeeccCCCCcEEEEEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCC
Confidence 4445555543444556799999999999987 589999999976 433322 100 12356789999999
Q ss_pred CCCcEEEEE-ECCCcEEEEECCCCCCCCCCCCCCCCceeec-ccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCC
Q 004477 105 TSDELVVSG-AGDAEVRLFNLSRFSGRGLDDNAITPSALYQ-CHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSS 182 (751)
Q Consensus 105 s~~~~l~sg-s~Dg~V~vwd~~~~~~~~~~~~~~~~~~~~~-~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~ 182 (751)
++++++. -....|.+|++....+.. .....+. ......+.++|+|++..+++..-.+++|.++++.....
T Consensus 155 --g~~v~v~dlG~D~v~~~~~~~~~~~l------~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g 226 (345)
T PF10282_consen 155 --GRFVYVPDLGADRVYVYDIDDDTGKL------TPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDG 226 (345)
T ss_dssp --SSEEEEEETTTTEEEEEEE-TTS-TE------EEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTT
T ss_pred --CCEEEEEecCCCEEEEEEEeCCCceE------EEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCC
Confidence 6776654 345689999998643211 1122222 23455789999996656667777889999999883321
Q ss_pred CCCCCCCCCccceEEEecccCceecccCCCCCccceEEEEEeCCCCcEEE-EEeCCCeEEEEeCCCC-CCccccCCCCCC
Q 004477 183 CPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLL-VGGSDAFARLYDRRML-PPLTSCQKRMSP 260 (751)
Q Consensus 183 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~-sgs~D~~IriwD~~~~-~~~~~~~~~~~~ 260 (751)
. ...+..... +............|.++|+ +++|. +.-.++.|.+|++... ..+...
T Consensus 227 ~----------~~~~~~~~~-----~~~~~~~~~~~~~i~ispd-g~~lyvsnr~~~sI~vf~~d~~~g~l~~~------ 284 (345)
T PF10282_consen 227 S----------LTEIQTIST-----LPEGFTGENAPAEIAISPD-GRFLYVSNRGSNSISVFDLDPATGTLTLV------ 284 (345)
T ss_dssp E----------EEEEEEEES-----CETTSCSSSSEEEEEE-TT-SSEEEEEECTTTEEEEEEECTTTTTEEEE------
T ss_pred c----------eeEEEEeee-----ccccccccCCceeEEEecC-CCEEEEEeccCCEEEEEEEecCCCceEEE------
Confidence 0 011110000 1011112236788999996 55554 4557789999999432 111110
Q ss_pred CCccccccccccccCCccccceEEEEEcCCCCEEEEEeC-CCcEEEEECCC
Q 004477 261 PPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYS-GEHVYLMDVNH 310 (751)
Q Consensus 261 ~~~~~~~~~~~~~~~g~~~~~vt~v~fspdg~~Ll~~s~-d~~I~lwdl~~ 310 (751)
..+ ...| .....++|+|+|++|+++.. ++.|.+|+++.
T Consensus 285 ----~~~-----~~~G---~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d~ 323 (345)
T PF10282_consen 285 ----QTV-----PTGG---KFPRHFAFSPDGRYLYVANQDSNTVSVFDIDP 323 (345)
T ss_dssp ----EEE-----EESS---SSEEEEEE-TTSSEEEEEETTTTEEEEEEEET
T ss_pred ----EEE-----eCCC---CCccEEEEeCCCCEEEEEecCCCeEEEEEEeC
Confidence 000 0011 13688999999999998875 78999998853
No 270
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=98.52 E-value=5.2e-06 Score=91.54 Aligned_cols=244 Identities=18% Similarity=0.208 Sum_probs=164.9
Q ss_pred cEEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEecccCCcceEEEEEecCC----------CCcEEEEEECCCcEEE
Q 004477 52 CVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPET----------SDELVVSGAGDAEVRL 121 (751)
Q Consensus 52 ~V~~l~~s~dg~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~s----------~~~~l~sgs~Dg~V~v 121 (751)
.-+++.|+|.| +||-|+.. .|.|-|..+-+.+..+ .-|...|+.|+|.|.. ..-+|+++...|.|.|
T Consensus 17 N~~A~Dw~~~G-LiAygshs-lV~VVDs~s~q~iqsi-e~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil 93 (1062)
T KOG1912|consen 17 NRNAADWSPSG-LIAYGSHS-LVSVVDSRSLQLIQSI-ELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIIL 93 (1062)
T ss_pred cccccccCccc-eEEEecCc-eEEEEehhhhhhhhcc-ccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEE
Confidence 36789999887 67777654 7888899988999988 7899999999998752 1236788888999999
Q ss_pred EECCCCCCCCCCCCCCCCceeecccCCceeEEEEec--CCC-CEEEEEeCCCcEEEEecCCCCCCCCCCCCCCccceEEE
Q 004477 122 FNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEV--GNP-HVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILL 198 (751)
Q Consensus 122 wd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp--~~~-~~l~s~s~Dg~I~iwDlr~~~~~~~~~~~~~~~~~~l~ 198 (751)
||.... ..+..+..|.++|..++|-+ ++. ++|+.-..-.+|.+|+..+|+. +|
T Consensus 94 ~d~~~~----------s~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k--------------~W 149 (1062)
T KOG1912|consen 94 VDFVLA----------SVINWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEK--------------FW 149 (1062)
T ss_pred EEehhh----------hhhhhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCce--------------ee
Confidence 999865 23556788999999999976 233 5777777778999999998863 33
Q ss_pred ecccCceecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCccccCCCCCCCCccccccc----ccccc
Q 004477 199 DLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCP----MHLSE 274 (751)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~ 274 (751)
.... ......|+.+.|-+.+.+..-+..|.|-+-+.--.++-.. +....+...+ .|+..
T Consensus 150 k~~y-----------s~~iLs~f~~DPfd~rh~~~l~s~g~vl~~~~l~~sep~~------pgk~~qI~sd~Sdl~~ler 212 (1062)
T KOG1912|consen 150 KYDY-----------SHEILSCFRVDPFDSRHFCVLGSKGFVLSCKDLGLSEPDV------PGKEFQITSDHSDLAHLER 212 (1062)
T ss_pred cccc-----------CCcceeeeeeCCCCcceEEEEccCceEEEEeccCCCCCCC------CceeEEEecCccchhhhhh
Confidence 3222 3345678899998888888888888888877654332111 0000000000 00000
Q ss_pred -----CCccc-----cce---EEEEEcCCCCEEEEEeCCCcEEEEECCCCCcceeeeecCCCceeEEeCCCCCCcccC
Q 004477 275 -----HGRSS-----LHL---THVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVGDASKIMSFTPTLNGLELQ 339 (751)
Q Consensus 275 -----~g~~~-----~~v---t~v~fspdg~~Ll~~s~d~~I~lwdl~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~ 339 (751)
..+.. +-+ ..++|+|.-+.++-......++|+|++-.....+..-.....+.+.+-|+.+...+.
T Consensus 213 e~at~ns~ts~~~sa~fity~a~faf~p~~rn~lfi~~prellv~dle~~~~l~vvpier~~akfv~vlP~~~rd~Lf 290 (1062)
T KOG1912|consen 213 ETATGNSTTSTPASAYFITYCAQFAFSPHWRNILFITFPRELLVFDLEYECCLAVVPIERGGAKFVDVLPDPRRDALF 290 (1062)
T ss_pred hhhccccccCCCcchhHHHHHHhhhcChhhhceEEEEeccceEEEcchhhceeEEEEeccCCcceeEeccCCCcceEE
Confidence 00000 011 236789988777777778899999998755444444455556677777776655443
No 271
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=98.51 E-value=4.6e-05 Score=82.27 Aligned_cols=262 Identities=12% Similarity=0.110 Sum_probs=151.7
Q ss_pred ccccccEEeccCCCcEEEEEECCCCCEEEEEeC----CCcEEEEeCCCC--e--EEEEecccCCcceEEEEEecCCCCcE
Q 004477 38 RRLSQERELEGHQGCVNAISWNSKGSLLISGSD----DTHINVWSYSSR--K--LLHSIETGHSANVFCTKFVPETSDEL 109 (751)
Q Consensus 38 ~~~~~~~~L~gH~~~V~~l~~s~dg~~LaSgs~----Dg~I~IWd~~~~--~--~~~~l~~~h~~~V~~v~fsp~s~~~~ 109 (751)
.++..+..+. -......|+++|++++|.+... ++.|..|.+... . .+... .........++++|+ +++
T Consensus 25 g~l~~~~~~~-~~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~-~~~g~~p~~i~~~~~--g~~ 100 (345)
T PF10282_consen 25 GTLTLVQTVA-EGENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSV-PSGGSSPCHIAVDPD--GRF 100 (345)
T ss_dssp TEEEEEEEEE-ESSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEE-EESSSCEEEEEECTT--SSE
T ss_pred CCceEeeeec-CCCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeee-ccCCCCcEEEEEecC--CCE
Confidence 3444444432 3345567899999999998876 578999987653 3 23333 223445567899999 777
Q ss_pred EEEEE-CCCcEEEEECCCCCCCCCCCCCCCCceeec----------ccCCceeEEEEecCCCCEEEEEeCCCcEEEEecC
Q 004477 110 VVSGA-GDAEVRLFNLSRFSGRGLDDNAITPSALYQ----------CHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFR 178 (751)
Q Consensus 110 l~sgs-~Dg~V~vwd~~~~~~~~~~~~~~~~~~~~~----------~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr 178 (751)
|+++. .+++|.++++... +... .....+. .-.....++.|+|++..++++.-....|.+|++.
T Consensus 101 l~vany~~g~v~v~~l~~~-g~l~-----~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~ 174 (345)
T PF10282_consen 101 LYVANYGGGSVSVFPLDDD-GSLG-----EVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDID 174 (345)
T ss_dssp EEEEETTTTEEEEEEECTT-SEEE-----EEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-
T ss_pred EEEEEccCCeEEEEEccCC-cccc-----eeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCCEEEEEEEe
Confidence 77765 5899999999863 2110 1111111 1234467899999554455444445689999997
Q ss_pred CCCCCCCCCCCCCccceEEEecccCceecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCC-CccccCCC
Q 004477 179 QGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLP-PLTSCQKR 257 (751)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~-~~~~~~~~ 257 (751)
..... ..... .+.. ........+.|+|++...+++.-.++.|.+|++.... .+..
T Consensus 175 ~~~~~----------l~~~~--------~~~~--~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~---- 230 (345)
T PF10282_consen 175 DDTGK----------LTPVD--------SIKV--PPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTE---- 230 (345)
T ss_dssp TTS-T----------EEEEE--------EEEC--STTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEE----
T ss_pred CCCce----------EEEee--------cccc--ccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeE----
Confidence 75411 00000 0100 1224567899999755566667778999999987221 1111
Q ss_pred CCCCCccccccccccccCCccccceEEEEEcCCCCEEEEEeC-CCcEEEEECCC--CCccee--eeecCCCceeEEeCCC
Q 004477 258 MSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYS-GEHVYLMDVNH--AGGRAM--RYTVGDASKIMSFTPT 332 (751)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~g~~~~~vt~v~fspdg~~Ll~~s~-d~~I~lwdl~~--~~~~~~--~~~~~~~~~~~~~sp~ 332 (751)
++..........+. .....|+++|||++|+++.. .+.|.+|+++. +..... ....+..++.+.++|+
T Consensus 231 ------~~~~~~~~~~~~~~--~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~s~~ 302 (345)
T PF10282_consen 231 ------IQTISTLPEGFTGE--NAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPTGGKFPRHFAFSPD 302 (345)
T ss_dssp ------EEEEESCETTSCSS--SSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEESSSSEEEEEE-TT
T ss_pred ------EEEeeecccccccc--CCceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEeCCCCCccEEEEeCC
Confidence 01110000000111 14788999999999888764 78999999953 222222 2223566899999999
Q ss_pred CCCcccCCC
Q 004477 333 LNGLELQPP 341 (751)
Q Consensus 333 ~~~~~~~~~ 341 (751)
.+.+.....
T Consensus 303 g~~l~Va~~ 311 (345)
T PF10282_consen 303 GRYLYVANQ 311 (345)
T ss_dssp SSEEEEEET
T ss_pred CCEEEEEec
Confidence 887766544
No 272
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=98.50 E-value=3.4e-07 Score=108.68 Aligned_cols=152 Identities=17% Similarity=0.244 Sum_probs=119.4
Q ss_pred CcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEecccCCcceEEEEEecCCCCcEEEEEE---CCCcEEEEECCCC
Q 004477 51 GCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGA---GDAEVRLFNLSRF 127 (751)
Q Consensus 51 ~~V~~l~~s~dg~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs---~Dg~V~vwd~~~~ 127 (751)
..|+.+.|+.+|+.+..+..||.+.+|... .+..... +.|.....++.|.- ..+++++ .++.+.+||...+
T Consensus 2252 s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~-pk~~~s~-qchnk~~~Df~Fi~----s~~~tag~s~d~~n~~lwDtl~~ 2325 (2439)
T KOG1064|consen 2252 SRVTRSRFNHQGNKFGIVDGDGDLSLWQAS-PKPYTSW-QCHNKALSDFRFIG----SLLATAGRSSDNRNVCLWDTLLP 2325 (2439)
T ss_pred chhhhhhhcccCCceeeeccCCceeecccC-Ccceecc-ccCCccccceeeee----hhhhccccCCCCCcccchhcccC
Confidence 678888999999999999999999999987 4444444 68999999999985 4677664 5789999998764
Q ss_pred CCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCCCCCCCCCCccceEEEecccCceec
Q 004477 128 SGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRS 207 (751)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 207 (751)
... .++. .+|.+.++++++.| ...+|+|||.+|.|.+||+|..+..
T Consensus 2326 ~~~-------s~v~--~~H~~gaT~l~~~P-~~qllisggr~G~v~l~D~rqrql~------------------------ 2371 (2439)
T KOG1064|consen 2326 PMN-------SLVH--TCHDGGATVLAYAP-KHQLLISGGRKGEVCLFDIRQRQLR------------------------ 2371 (2439)
T ss_pred ccc-------ceee--eecCCCceEEEEcC-cceEEEecCCcCcEEEeehHHHHHH------------------------
Confidence 332 2233 89999999999999 6689999999999999999987632
Q ss_pred ccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCcccc
Q 004477 208 LADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSC 254 (751)
Q Consensus 208 ~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~~~~ 254 (751)
|.... +. ...++++|+..|.|+||++.....+..+
T Consensus 2372 ------h~~~~----~~--~~~~f~~~ss~g~ikIw~~s~~~ll~~~ 2406 (2439)
T KOG1064|consen 2372 ------HTFQA----LD--TREYFVTGSSEGNIKIWRLSEFGLLHTF 2406 (2439)
T ss_pred ------HHhhh----hh--hhheeeccCcccceEEEEccccchhhcC
Confidence 22222 22 2479999999999999999876554443
No 273
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=98.47 E-value=6.7e-07 Score=91.98 Aligned_cols=102 Identities=20% Similarity=0.268 Sum_probs=79.6
Q ss_pred EEeCCCcEEEEeCCCCeEEEEecccCCcceEEEEEecCCCCcEEEEEECCCcEEEEECCCCCCCCCCCCCCCCceeeccc
Q 004477 67 SGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCH 146 (751)
Q Consensus 67 Sgs~Dg~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~Dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h 146 (751)
.+++...+.+|....+.+... .||-..+..|+|+|+ +++|+|+..|..|||-...... .--..+-||
T Consensus 127 kagD~~~~di~s~~~~~~~~~--lGhvSml~dVavS~D--~~~IitaDRDEkIRvs~ypa~f---------~IesfclGH 193 (390)
T KOG3914|consen 127 KAGDVYSFDILSADSGRCEPI--LGHVSMLLDVAVSPD--DQFIITADRDEKIRVSRYPATF---------VIESFCLGH 193 (390)
T ss_pred ecCCceeeeeecccccCcchh--hhhhhhhheeeecCC--CCEEEEecCCceEEEEecCccc---------chhhhcccc
Confidence 445566666666665544443 499999999999999 7999999999999987765321 112345689
Q ss_pred CCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCC
Q 004477 147 TRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSC 183 (751)
Q Consensus 147 ~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~ 183 (751)
+..|..++.-+ + +.|+|+|.|++|++||+++++.+
T Consensus 194 ~eFVS~isl~~-~-~~LlS~sGD~tlr~Wd~~sgk~L 228 (390)
T KOG3914|consen 194 KEFVSTISLTD-N-YLLLSGSGDKTLRLWDITSGKLL 228 (390)
T ss_pred Hhheeeeeecc-C-ceeeecCCCCcEEEEecccCCcc
Confidence 99999999986 3 56899999999999999999865
No 274
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=98.46 E-value=2.4e-05 Score=83.91 Aligned_cols=196 Identities=12% Similarity=0.128 Sum_probs=126.9
Q ss_pred CCCcEEEEEECCCCC--EEE-----EEeCCCcEEEEeCCCCeE-----EEEecccCCcceEEEEEecCCCCcEEE--EEE
Q 004477 49 HQGCVNAISWNSKGS--LLI-----SGSDDTHINVWSYSSRKL-----LHSIETGHSANVFCTKFVPETSDELVV--SGA 114 (751)
Q Consensus 49 H~~~V~~l~~s~dg~--~La-----Sgs~Dg~I~IWd~~~~~~-----~~~l~~~h~~~V~~v~fsp~s~~~~l~--sgs 114 (751)
|...|+.+.+||.+. .+| ++|.-..|+||.+..... .++| ....=..+.|.+-.. .+|+ +..
T Consensus 164 ~~~~i~~f~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~~~~~~~~a~ksF---Fkadkvqm~WN~~gt-~LLvLastd 239 (566)
T KOG2315|consen 164 SVSGITMLSLSPGPEPPFVAVYVPEKKGAPASVRIYKYPEEGQHQPVANKSF---FKADKVQMKWNKLGT-ALLVLASTD 239 (566)
T ss_pred eccceeeEEecCCCCCceEEEEccCCCCCCcEEEEeccccccccchhhhccc---cccceeEEEeccCCc-eEEEEEEEe
Confidence 577899999999743 454 346777899998762211 1122 122234567777642 2333 232
Q ss_pred CC---------CcEEEEECCCCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEE-EeCCCcEEEEecCCCCCCC
Q 004477 115 GD---------AEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWS-ASEDGTLRQHDFRQGSSCP 184 (751)
Q Consensus 115 ~D---------g~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s-~s~Dg~I~iwDlr~~~~~~ 184 (751)
-| .++++.++... .....+ .-.++|.++.|+|.+..+-++ |-.--++.|||++..
T Consensus 240 VDktn~SYYGEq~Lyll~t~g~----------s~~V~L-~k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr~~---- 304 (566)
T KOG2315|consen 240 VDKTNASYYGEQTLYLLATQGE----------SVSVPL-LKEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLRGK---- 304 (566)
T ss_pred ecCCCccccccceEEEEEecCc----------eEEEec-CCCCCceEEEECCCCCEEEEEEecccceEEEEcCCCC----
Confidence 33 35677777621 112222 248999999999944333333 334568889998763
Q ss_pred CCCCCCCccceEEEecccCceecccCCCCCccceEEEEEeCCCCcEEEEEeCC---CeEEEEeCCCCCCccccCCCCCCC
Q 004477 185 PAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSD---AFARLYDRRMLPPLTSCQKRMSPP 261 (751)
Q Consensus 185 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D---~~IriwD~~~~~~~~~~~~~~~~~ 261 (751)
.++++-. .+-+++-|||. +++|+.++.+ |.|-|||+.+.+.+..+..
T Consensus 305 -----------~v~df~e-------------gpRN~~~fnp~-g~ii~lAGFGNL~G~mEvwDv~n~K~i~~~~a----- 354 (566)
T KOG2315|consen 305 -----------PVFDFPE-------------GPRNTAFFNPH-GNIILLAGFGNLPGDMEVWDVPNRKLIAKFKA----- 354 (566)
T ss_pred -----------EeEeCCC-------------CCccceEECCC-CCEEEEeecCCCCCceEEEeccchhhcccccc-----
Confidence 3344332 34567889995 7888888765 7899999998765544311
Q ss_pred CccccccccccccCCccccceEEEEEcCCCCEEEEEeC------CCcEEEEECCCC
Q 004477 262 PCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYS------GEHVYLMDVNHA 311 (751)
Q Consensus 262 ~~~~~~~~~~~~~~g~~~~~vt~v~fspdg~~Ll~~s~------d~~I~lwdl~~~ 311 (751)
...+-+.|+|||.++++++. |+.++||+....
T Consensus 355 ------------------~~tt~~eW~PdGe~flTATTaPRlrvdNg~KiwhytG~ 392 (566)
T KOG2315|consen 355 ------------------ANTTVFEWSPDGEYFLTATTAPRLRVDNGIKIWHYTGS 392 (566)
T ss_pred ------------------CCceEEEEcCCCcEEEEEeccccEEecCCeEEEEecCc
Confidence 12577899999999999876 799999999884
No 275
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=98.42 E-value=0.00011 Score=78.05 Aligned_cols=237 Identities=13% Similarity=0.133 Sum_probs=132.3
Q ss_pred ccccccEEeccCCCcEEEEEECCCCCEEEEEeC----------CCcEEEEeCCCCeEEEEecccC------CcceEEEEE
Q 004477 38 RRLSQERELEGHQGCVNAISWNSKGSLLISGSD----------DTHINVWSYSSRKLLHSIETGH------SANVFCTKF 101 (751)
Q Consensus 38 ~~~~~~~~L~gH~~~V~~l~~s~dg~~LaSgs~----------Dg~I~IWd~~~~~~~~~l~~~h------~~~V~~v~f 101 (751)
.+.+.+.++..-..+- .+ ++|||+.|..+.. +..|.|||..+.+.+..+..+- ...-..+++
T Consensus 35 ~~~~v~g~i~~G~~P~-~~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~~~~~~~~l 112 (352)
T TIGR02658 35 EAGRVLGMTDGGFLPN-PV-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLVGTYPWMTSL 112 (352)
T ss_pred CCCEEEEEEEccCCCc-ee-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhhccCccceEEE
Confidence 3455556555433322 24 9999998777655 7889999999999998884321 223447889
Q ss_pred ecCCCCcEEEEEE-C-CCcEEEEECCCCCCCCCCCCCCCCceeec---------------------------ccCCceeE
Q 004477 102 VPETSDELVVSGA-G-DAEVRLFNLSRFSGRGLDDNAITPSALYQ---------------------------CHTRRVKK 152 (751)
Q Consensus 102 sp~s~~~~l~sgs-~-Dg~V~vwd~~~~~~~~~~~~~~~~~~~~~---------------------------~h~~~V~~ 152 (751)
+|+ |++|+... . +..|-|.|+.+..-...-... .+...+. .++..|..
T Consensus 113 s~d--gk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp-~~~~vy~t~e~~~~~~~~Dg~~~~v~~d~~g~~~~~~~~vf~ 189 (352)
T TIGR02658 113 TPD--NKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVP-DCYHIFPTANDTFFMHCRDGSLAKVGYGTKGNPKIKPTEVFH 189 (352)
T ss_pred CCC--CCEEEEecCCCCCEEEEEECCCCcEEEEEeCC-CCcEEEEecCCccEEEeecCceEEEEecCCCceEEeeeeeec
Confidence 999 88887655 3 789999999864211100000 0000000 00000100
Q ss_pred ---------EEEecCCCCEEEEEeCCCcEEEEecCCCCCCCCCCCCCCccceEEEecccCceecccCCCCCccceEEEEE
Q 004477 153 ---------LAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDI 223 (751)
Q Consensus 153 ---------l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~i~~ 223 (751)
-.|.+.++..++...+ |+|.+.|+....... ...|....... ....-....+.-+++
T Consensus 190 ~~~~~v~~rP~~~~~dg~~~~vs~e-G~V~~id~~~~~~~~----------~~~~~~~~~~~---~~~~wrP~g~q~ia~ 255 (352)
T TIGR02658 190 PEDEYLINHPAYSNKSGRLVWPTYT-GKIFQIDLSSGDAKF----------LPAIEAFTEAE---KADGWRPGGWQQVAY 255 (352)
T ss_pred CCccccccCCceEcCCCcEEEEecC-CeEEEEecCCCccee----------cceeeeccccc---cccccCCCcceeEEE
Confidence 0223324455544444 777777765543110 00111000000 000012233444999
Q ss_pred eCCCCcEEEEEe---------CCCeEEEEeCCCCCCccccCCCCCCCCccccccccccccCCccccceEEEEEcCCCC-E
Q 004477 224 SSTRPHLLLVGG---------SDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGE-E 293 (751)
Q Consensus 224 sp~~~~~l~sgs---------~D~~IriwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~vt~v~fspdg~-~ 293 (751)
+|++.++++... ..+.|.++|..+.+.+..+. -| ..+..++|+|||+ +
T Consensus 256 ~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~-------------------vG---~~~~~iavS~Dgkp~ 313 (352)
T TIGR02658 256 HRARDRIYLLADQRAKWTHKTASRFLFVVDAKTGKRLRKIE-------------------LG---HEIDSINVSQDAKPL 313 (352)
T ss_pred cCCCCEEEEEecCCccccccCCCCEEEEEECCCCeEEEEEe-------------------CC---CceeeEEECCCCCeE
Confidence 996444444231 22589999999877554331 11 1488999999999 7
Q ss_pred EEEEe-CCCcEEEEECCCCCcce
Q 004477 294 VLLSY-SGEHVYLMDVNHAGGRA 315 (751)
Q Consensus 294 Ll~~s-~d~~I~lwdl~~~~~~~ 315 (751)
|++.. .++.|.++|..+++...
T Consensus 314 lyvtn~~s~~VsViD~~t~k~i~ 336 (352)
T TIGR02658 314 LYALSTGDKTLYIFDAETGKELS 336 (352)
T ss_pred EEEeCCCCCcEEEEECcCCeEEe
Confidence 77666 57899999999965433
No 276
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=98.42 E-value=0.00011 Score=73.26 Aligned_cols=232 Identities=15% Similarity=0.136 Sum_probs=133.9
Q ss_pred EEEECCCCCEEEEEeCCCcEEEEeCCCCe--E--EEEecccCCcceEEEEEecCCCCcEEEEEECCCcEEEEECCCCCCC
Q 004477 55 AISWNSKGSLLISGSDDTHINVWSYSSRK--L--LHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGR 130 (751)
Q Consensus 55 ~l~~s~dg~~LaSgs~Dg~I~IWd~~~~~--~--~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~Dg~V~vwd~~~~~~~ 130 (751)
.++.+.+|++||.- .|..|-|=..++.- . ..++.+.-.-.-.-++|+|+ +.+||.+...|+|+++|+.....-
T Consensus 2 ~~~~~~~Gk~lAi~-qd~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSpD--~tlLa~a~S~G~i~vfdl~g~~lf 78 (282)
T PF15492_consen 2 HLALSSDGKLLAIL-QDQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSPD--CTLLAYAESTGTIRVFDLMGSELF 78 (282)
T ss_pred ceeecCCCcEEEEE-eccEEEEEeccCCchheeEEEecCCCCCchheEEEECCC--CcEEEEEcCCCeEEEEecccceeE
Confidence 36678899988877 56677776554321 1 12232333344678999999 799999999999999999842211
Q ss_pred CCCCCCCCCceeec-ccCCceeEEEEecCC-----CCEEEEEeCCCcEEEEecCCCCCCCCCCCCCCccceEEEecccCc
Q 004477 131 GLDDNAITPSALYQ-CHTRRVKKLAVEVGN-----PHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGA 204 (751)
Q Consensus 131 ~~~~~~~~~~~~~~-~h~~~V~~l~~sp~~-----~~~l~s~s~Dg~I~iwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~ 204 (751)
.+ .+...+. .-...|..+.|.+.. ...|+.-..+|.++-|-+..+.... .. .+.
T Consensus 79 ~I-----~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~-----y~--e~h-------- 138 (282)
T PF15492_consen 79 VI-----PPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQG-----YQ--ENH-------- 138 (282)
T ss_pred Ec-----CcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCc-----ce--eeE--------
Confidence 11 1111111 123556677775422 2356667778888877764332110 00 011
Q ss_pred eecccCCCCCccceEEEEEeCCCCcEEEEEeCC-----------CeEEEEeCCCCCCccccCCCCCCC-------Ccccc
Q 004477 205 KRSLADPPKQTLSLKSCDISSTRPHLLLVGGSD-----------AFARLYDRRMLPPLTSCQKRMSPP-------PCVNY 266 (751)
Q Consensus 205 ~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D-----------~~IriwD~~~~~~~~~~~~~~~~~-------~~~~~ 266 (751)
.+.........|.++.++|. .++|++|+.. .-+.-|.+-+..|..+........ .+...
T Consensus 139 --sfsf~~~yp~Gi~~~vy~p~-h~LLlVgG~~~~~~~~s~a~~~GLtaWRiL~~~Pyyk~v~~~~~~~~~~~~~~~~~~ 215 (282)
T PF15492_consen 139 --SFSFSSHYPHGINSAVYHPK-HRLLLVGGCEQNQDGMSKASSCGLTAWRILSDSPYYKQVTSSEDDITASSKRRGLLR 215 (282)
T ss_pred --EEEecccCCCceeEEEEcCC-CCEEEEeccCCCCCccccccccCceEEEEcCCCCcEEEccccCccccccccccceee
Confidence 11222224567999999995 5777777632 135567665555433321111000 11111
Q ss_pred cccccc-ccCCccccceEEEEEcCCCCEEEEEeCCCcEEEEECCCCC
Q 004477 267 FCPMHL-SEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAG 312 (751)
Q Consensus 267 ~~~~~~-~~~g~~~~~vt~v~fspdg~~Ll~~s~d~~I~lwdl~~~~ 312 (751)
+....+ ..++.....|..+..||||+.|++...+|.|.||++-+-.
T Consensus 216 ~~~~~~fs~~~~~~d~i~kmSlSPdg~~La~ih~sG~lsLW~iPsL~ 262 (282)
T PF15492_consen 216 IPSFKFFSRQGQEQDGIFKMSLSPDGSLLACIHFSGSLSLWEIPSLR 262 (282)
T ss_pred ccceeeeeccccCCCceEEEEECCCCCEEEEEEcCCeEEEEecCcch
Confidence 111111 1112223359999999999999999999999999998854
No 277
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=98.42 E-value=7.5e-05 Score=91.39 Aligned_cols=233 Identities=11% Similarity=0.071 Sum_probs=133.9
Q ss_pred EEEEECC-CCCEEEEEeCCCcEEEEeCCCCeEEEEecc-cC------------CcceEEEEEecCCCCcEEE-EEECCCc
Q 004477 54 NAISWNS-KGSLLISGSDDTHINVWSYSSRKLLHSIET-GH------------SANVFCTKFVPETSDELVV-SGAGDAE 118 (751)
Q Consensus 54 ~~l~~s~-dg~~LaSgs~Dg~I~IWd~~~~~~~~~l~~-~h------------~~~V~~v~fsp~s~~~~l~-sgs~Dg~ 118 (751)
..+++++ +|.++++-+..+.|.+||.. +..+..+.. +. -.....|++.++ ++.|+ +-...+.
T Consensus 571 ~gvavd~~~g~lyVaDs~n~rI~v~d~~-G~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~--gn~LYVaDt~n~~ 647 (1057)
T PLN02919 571 GKLAIDLLNNRLFISDSNHNRIVVTDLD-GNFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAK--KNLLYVADTENHA 647 (1057)
T ss_pred ceEEEECCCCeEEEEECCCCeEEEEeCC-CCEEEEEccCCCcCCCCCchhccccCCCcEEEEeCC--CCEEEEEeCCCce
Confidence 3578876 46788888888999999976 444444422 11 123578899987 55544 4445678
Q ss_pred EEEEECCCCCCCCCCCCCCCCceeecc-----------------cCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCC
Q 004477 119 VRLFNLSRFSGRGLDDNAITPSALYQC-----------------HTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGS 181 (751)
Q Consensus 119 V~vwd~~~~~~~~~~~~~~~~~~~~~~-----------------h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~ 181 (751)
|+++|+.... +.++.+ --.....++|+|+++.++++.+.++.|++||..++.
T Consensus 648 Ir~id~~~~~-----------V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~ 716 (1057)
T PLN02919 648 LREIDFVNET-----------VRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGV 716 (1057)
T ss_pred EEEEecCCCE-----------EEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCe
Confidence 9999987532 111110 012345799999777888999999999999987754
Q ss_pred CCCCCCCCCCccceEEEecccCceecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCccccCCCCCCC
Q 004477 182 SCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPP 261 (751)
Q Consensus 182 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~~~~~~~~~~~ 261 (751)
.....+.+. .. ...+.. ...........|+++|++..++++-+.++.|++||+.+.............+
T Consensus 717 v~~~~G~G~--~~-----~~~g~~----~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~ 785 (1057)
T PLN02919 717 TRVFSGDGY--ER-----NLNGSS----GTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFS 785 (1057)
T ss_pred EEEEecCCc--cc-----cCCCCc----cccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccC
Confidence 210000000 00 000000 0001123467799999654466777778999999988654211000000000
Q ss_pred Cccccccccc-cccCCccccceEEEEEcCCCCEEEEEeCCCcEEEEECCCCC
Q 004477 262 PCVNYFCPMH-LSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAG 312 (751)
Q Consensus 262 ~~~~~~~~~~-~~~~g~~~~~vt~v~fspdg~~Ll~~s~d~~I~lwdl~~~~ 312 (751)
.....+-... ...... ......++|+++|+.+++.+.++.|++||..++.
T Consensus 786 ~~l~~fG~~dG~g~~~~-l~~P~Gvavd~dG~LYVADs~N~rIrviD~~tg~ 836 (1057)
T PLN02919 786 DNLFKFGDHDGVGSEVL-LQHPLGVLCAKDGQIYVADSYNHKIKKLDPATKR 836 (1057)
T ss_pred cccccccCCCCchhhhh-ccCCceeeEeCCCcEEEEECCCCEEEEEECCCCe
Confidence 0000000000 000000 1125689999999988888899999999998743
No 278
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.41 E-value=8.6e-07 Score=93.67 Aligned_cols=182 Identities=15% Similarity=0.228 Sum_probs=121.9
Q ss_pred EEEecccCCcceEEEEEecCCCCcEEEEEECCCcEEEEECCCCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEE
Q 004477 85 LHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVW 164 (751)
Q Consensus 85 ~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~Dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~ 164 (751)
+..+ .||...|..++-..+ .+-+++++.|.+|++|.++.. +... ....+..+++.|+.+|.++.|-. +-+.++
T Consensus 728 L~nf-~GH~~~iRai~AidN--ENSFiSASkDKTVKLWSik~E-gD~~--~tsaCQfTY~aHkk~i~~igfL~-~lr~i~ 800 (1034)
T KOG4190|consen 728 LCNF-TGHQEKIRAIAAIDN--ENSFISASKDKTVKLWSIKPE-GDEI--GTSACQFTYQAHKKPIHDIGFLA-DLRSIA 800 (1034)
T ss_pred eecc-cCcHHHhHHHHhccc--ccceeeccCCceEEEEEeccc-cCcc--ccceeeeEhhhccCcccceeeee-ccceee
Confidence 3445 799999988887766 678999999999999999852 2111 11246778899999999999987 445554
Q ss_pred EEeCCCcEEEEecCCCCCCCCCCCCCCccceEEEecccCceecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEe
Q 004477 165 SASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYD 244 (751)
Q Consensus 165 s~s~Dg~I~iwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD 244 (751)
+.||.|.+||.--+.... .+.+..+.+ ....|+|+.- -+.+-+++.++...+|+++|
T Consensus 801 --ScD~giHlWDPFigr~La----------q~~dapk~~----------a~~~ikcl~n-v~~~iliAgcsaeSTVKl~D 857 (1034)
T KOG4190|consen 801 --SCDGGIHLWDPFIGRLLA----------QMEDAPKEG----------AGGNIKCLEN-VDRHILIAGCSAESTVKLFD 857 (1034)
T ss_pred --eccCcceeecccccchhH----------hhhcCcccC----------CCceeEeccc-Ccchheeeeccchhhheeee
Confidence 558999999976655331 111211111 1223333321 11223444457899999999
Q ss_pred CCCCCCccccCCCCCCCCccccccccccccCCccccceEEEEEcCCCCEEEEEeCCCcEEEEECCCCC
Q 004477 245 RRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAG 312 (751)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~vt~v~fspdg~~Ll~~s~d~~I~lwdl~~~~ 312 (751)
.|....+..+. .+.. ...+..+.+++..+.|+.++++-++|+|.+.|.+++.
T Consensus 858 aRsce~~~E~k-----------Vcna-----~~Pna~~R~iaVa~~GN~lAa~LSnGci~~LDaR~G~ 909 (1034)
T KOG4190|consen 858 ARSCEWTCELK-----------VCNA-----PGPNALTRAIAVADKGNKLAAALSNGCIAILDARNGK 909 (1034)
T ss_pred cccccceeeEE-----------eccC-----CCCchheeEEEeccCcchhhHHhcCCcEEEEecCCCc
Confidence 99866433221 1100 0112247899999999999999999999999999964
No 279
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=98.39 E-value=2.4e-05 Score=76.46 Aligned_cols=199 Identities=13% Similarity=0.019 Sum_probs=132.0
Q ss_pred EEEEEeCCCcEEEEeCCCCeEEEEecccCCcc--eEEEEEecCCCCcEEEEEECCCcEEEEECCCCCCCCCCCCCCCCce
Q 004477 64 LLISGSDDTHINVWSYSSRKLLHSIETGHSAN--VFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSA 141 (751)
Q Consensus 64 ~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~--V~~v~fsp~s~~~~l~sgs~Dg~V~vwd~~~~~~~~~~~~~~~~~~ 141 (751)
-+.-++.|.++++.++..+.....+ |..+ ++++..+|+ ++++++.+....|..|.+....... ..
T Consensus 130 ~~~i~sndht~k~~~~~~~s~~~~~---h~~~~~~ns~~~snd--~~~~~~Vgds~~Vf~y~id~~sey~--------~~ 196 (344)
T KOG4532|consen 130 PLNIASNDHTGKTMVVSGDSNKFAV---HNQNLTQNSLHYSND--PSWGSSVGDSRRVFRYAIDDESEYI--------EN 196 (344)
T ss_pred ceeeccCCcceeEEEEecCccccee---eccccceeeeEEcCC--CceEEEecCCCcceEEEeCCcccee--------ee
Confidence 3556677778888777644332222 4333 889999999 8999999999999999998643321 12
Q ss_pred -eecccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCCCCCCCCCCccceEEEecccCceecccCCCCCccceEE
Q 004477 142 -LYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKS 220 (751)
Q Consensus 142 -~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~ 220 (751)
.....++.=.+..|+. ....||++..||++.|||+|....+... .-...|.|.+.+..
T Consensus 197 ~~~a~t~D~gF~~S~s~-~~~~FAv~~Qdg~~~I~DVR~~~tpm~~--------------------~sstrp~hnGa~R~ 255 (344)
T KOG4532|consen 197 IYEAPTSDHGFYNSFSE-NDLQFAVVFQDGTCAIYDVRNMATPMAE--------------------ISSTRPHHNGAFRV 255 (344)
T ss_pred eEecccCCCceeeeecc-CcceEEEEecCCcEEEEEecccccchhh--------------------hcccCCCCCCceEE
Confidence 2233344456778887 5578999999999999999986532111 11233458889999
Q ss_pred EEEeCCCC-cEEEEEeCCCeEEEEeCCCCCCccccCCCCCCCCccccccccccccCCccccceEEEEEcCCCCEEEEEeC
Q 004477 221 CDISSTRP-HLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYS 299 (751)
Q Consensus 221 i~~sp~~~-~~l~sgs~D~~IriwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~vt~v~fspdg~~Ll~~s~ 299 (751)
+.|+|.+. .+|...-.-+.+.+.|+|++.....+. +..-....|....|..-.|+.++.-+.+.+.
T Consensus 256 c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~q~I~-------------i~~d~~~~~~tq~ifgt~f~~~n~s~~v~~e 322 (344)
T KOG4532|consen 256 CRFSLYGLLDLLFISEHFSRVHVVDTRNYVNHQVIV-------------IPDDVERKHNTQHIFGTNFNNENESNDVKNE 322 (344)
T ss_pred EEecCCCcceEEEEecCcceEEEEEcccCceeeEEe-------------cCccccccccccccccccccCCCcccccccc
Confidence 99998433 355555566899999999986433221 1111123344445888889988887776665
Q ss_pred CCcEEEEECCC
Q 004477 300 GEHVYLMDVNH 310 (751)
Q Consensus 300 d~~I~lwdl~~ 310 (751)
+ +++=|++..
T Consensus 323 ~-~~ae~ni~s 332 (344)
T KOG4532|consen 323 L-QGAEYNILS 332 (344)
T ss_pred h-hhheeeccc
Confidence 4 556666665
No 280
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.38 E-value=4.1e-06 Score=87.11 Aligned_cols=263 Identities=13% Similarity=0.116 Sum_probs=173.8
Q ss_pred cccccccccchhhh-ccccccEEeccCCCcEEEEEECCCCCEEEEEeC-CCcEEEEeCCCCeEEEEecccC-CcceEEEE
Q 004477 24 PDVNHSLQMHSSLV-RRLSQERELEGHQGCVNAISWNSKGSLLISGSD-DTHINVWSYSSRKLLHSIETGH-SANVFCTK 100 (751)
Q Consensus 24 ~~~~~~l~~~~~~i-~~~~~~~~L~gH~~~V~~l~~s~dg~~LaSgs~-Dg~I~IWd~~~~~~~~~l~~~h-~~~V~~v~ 100 (751)
..++..+++|...- .-...++.+..|-+.|..++.+-+|.++.|.+. |..++++|+.+-..+.-+.... .+. +.
T Consensus 26 ASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn~DminmiKL~~lPg~---a~ 102 (558)
T KOG0882|consen 26 ASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVENFDMINMIKLVDLPGF---AE 102 (558)
T ss_pred eecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccccceeEeeccCcccceeEEEeeccchhhhcccccCCCc---eE
Confidence 45677778887644 666788888999999999999999999999888 9999999988654442221111 121 22
Q ss_pred EecCCCC----cEEEEEECCCcEEEEECCCCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEe
Q 004477 101 FVPETSD----ELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHD 176 (751)
Q Consensus 101 fsp~s~~----~~l~sgs~Dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwD 176 (751)
|.... | .+-++...++.|.|+|-..... +....-.-|..+|..+.+.+ -+..++|....|.|.-|.
T Consensus 103 wv~sk-Gd~~s~IAVs~~~sg~i~VvD~~~d~~--------q~~~fkklH~sPV~~i~y~q-a~Ds~vSiD~~gmVEyWs 172 (558)
T KOG0882|consen 103 WVTSK-GDKISLIAVSLFKSGKIFVVDGFGDFC--------QDGYFKKLHFSPVKKIRYNQ-AGDSAVSIDISGMVEYWS 172 (558)
T ss_pred EecCC-CCeeeeEEeecccCCCcEEECCcCCcC--------ccceecccccCceEEEEeec-cccceeeccccceeEeec
Confidence 22221 2 2333455688999999874321 23444556999999999999 567888998899999998
Q ss_pred cCCCCCCCCCCCCCCccceEEEecccCceecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCccccCC
Q 004477 177 FRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQK 256 (751)
Q Consensus 177 lr~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~~~~~~ 256 (751)
....-..+ ...+.|.++... -+...++.....+++.|+|+ +..+.+-+.|..||+++.++++.+..+..
T Consensus 173 ~e~~~qfP--------r~~l~~~~K~eT--dLy~f~K~Kt~pts~Efsp~-g~qistl~~DrkVR~F~~KtGklvqeiDE 241 (558)
T KOG0882|consen 173 AEGPFQFP--------RTNLNFELKHET--DLYGFPKAKTEPTSFEFSPD-GAQISTLNPDRKVRGFVFKTGKLVQEIDE 241 (558)
T ss_pred CCCcccCc--------cccccccccccc--hhhcccccccCccceEEccc-cCcccccCcccEEEEEEeccchhhhhhhc
Confidence 77411100 012223332211 23445566778899999995 78999999999999999999987665543
Q ss_pred CCCCCCcccc--ccccccc----------cCCccccceEEEEEcCCCCEEEEEeCCCcEEEEECCCC
Q 004477 257 RMSPPPCVNY--FCPMHLS----------EHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHA 311 (751)
Q Consensus 257 ~~~~~~~~~~--~~~~~~~----------~~g~~~~~vt~v~fspdg~~Ll~~s~d~~I~lwdl~~~ 311 (751)
......+... +...+.. ...|....-+.+.|...|++|+-++.= -|+++++.+.
T Consensus 242 ~~t~~~~q~ks~y~l~~VelgRRmaverelek~~~~~~~~~~fdes~~flly~t~~-gikvin~~tn 307 (558)
T KOG0882|consen 242 VLTDAQYQPKSPYGLMHVELGRRMAVERELEKHGSTVGTNAVFDESGNFLLYGTIL-GIKVINLDTN 307 (558)
T ss_pred cchhhhhccccccccceeehhhhhhHHhhHhhhcCcccceeEEcCCCCEEEeecce-eEEEEEeecC
Confidence 3211111110 0001100 012333345788999999999988765 4889999884
No 281
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.38 E-value=3.5e-06 Score=83.55 Aligned_cols=233 Identities=18% Similarity=0.255 Sum_probs=142.5
Q ss_pred CcEEEEEECCCCC--EEEEEeCCCcEEEEeCCCCe-------------------EE-----------------------E
Q 004477 51 GCVNAISWNSKGS--LLISGSDDTHINVWSYSSRK-------------------LL-----------------------H 86 (751)
Q Consensus 51 ~~V~~l~~s~dg~--~LaSgs~Dg~I~IWd~~~~~-------------------~~-----------------------~ 86 (751)
..|+.+.|..++. .++..+.|++|+||.+.... .+ .
T Consensus 86 EKin~I~w~~~t~r~hFLlstNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~r 165 (460)
T COG5170 86 EKINAIEWFDDTGRNHFLLSTNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCR 165 (460)
T ss_pred HHhhheeeecCCCcceEEEecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccce
Confidence 4589999987653 45555689999999865320 00 0
Q ss_pred EecccCCcceEEEEEecCCCCcEEEEEECCCcEEEEECCCCCCCCCCCCCCCCceeeccc-----CCceeEEEEecCCCC
Q 004477 87 SIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCH-----TRRVKKLAVEVGNPH 161 (751)
Q Consensus 87 ~l~~~h~~~V~~v~fsp~s~~~~l~sgs~Dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h-----~~~V~~l~~sp~~~~ 161 (751)
.....|...|.++.|..+ ...+++ +.|-.|.+|++....+.. .+.-++.| +..|++..|+|..-.
T Consensus 166 vyaNaH~yhiNSiS~NsD--~et~lS-aDdLrINLWnl~i~D~sF-------nIVDiKP~nmeeLteVItSaeFhp~~cn 235 (460)
T COG5170 166 VYANAHPYHINSISFNSD--KETLLS-ADDLRINLWNLEIIDGSF-------NIVDIKPHNMEELTEVITSAEFHPEMCN 235 (460)
T ss_pred eccccceeEeeeeeecCc--hheeee-ccceeeeeccccccCCce-------EEEeccCccHHHHHHHHhhcccCHhHcc
Confidence 011468888999999988 466666 468899999998654321 12223333 456899999998888
Q ss_pred EEEEEeCCCcEEEEecCCCCCCCCCCCCCCccceEEEecccCceecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEE
Q 004477 162 VVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFAR 241 (751)
Q Consensus 162 ~l~s~s~Dg~I~iwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~Ir 241 (751)
+|.-.+..|.|++-|+|....|-... .++..... .........-...|..+.|++. +++|++-. --+|+
T Consensus 236 ~fmYSsSkG~Ikl~DlRq~alcdn~~--------klfe~~~D-~v~~~ff~eivsSISD~kFs~n-gryIlsRd-yltvk 304 (460)
T COG5170 236 VFMYSSSKGEIKLNDLRQSALCDNSK--------KLFELTID-GVDVDFFEEIVSSISDFKFSDN-GRYILSRD-YLTVK 304 (460)
T ss_pred eEEEecCCCcEEehhhhhhhhccCch--------hhhhhccC-cccchhHHHHhhhhcceEEcCC-CcEEEEec-cceEE
Confidence 88888999999999999876552110 00000000 0001111123356788999994 77887654 46899
Q ss_pred EEeCCCCC-CccccCCCCCCCCccccccccccccCCccccceEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 004477 242 LYDRRMLP-PLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNH 310 (751)
Q Consensus 242 iwD~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~vt~v~fspdg~~Ll~~s~d~~I~lwdl~~ 310 (751)
|||.++.+ ++.+.+ -.|...-....+.+ ...-+.--.+.||-|.+.+++|+..+..-+|-..+
T Consensus 305 iwDvnm~k~pikTi~-----~h~~l~~~l~d~YE-nDaifdkFeisfSgd~~~v~sgsy~NNfgiyp~~s 368 (460)
T COG5170 305 IWDVNMAKNPIKTIP-----MHCDLMDELNDVYE-NDAIFDKFEISFSGDDKHVLSGSYSNNFGIYPTDS 368 (460)
T ss_pred EEecccccCCceeec-----hHHHHHHHHHhhhh-ccceeeeEEEEecCCcccccccccccceeeecccc
Confidence 99999865 222110 00100000000000 00111124578999999999999988888887555
No 282
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=98.36 E-value=4.1e-05 Score=80.24 Aligned_cols=120 Identities=14% Similarity=0.197 Sum_probs=96.5
Q ss_pred cCCCcEEEEEECCCCCEEEEEeCCC-cEEEEeCCCCeEEEEecccCCcceEEEEEecCCCCcEEEEEECCCcEEEEECCC
Q 004477 48 GHQGCVNAISWNSKGSLLISGSDDT-HINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSR 126 (751)
Q Consensus 48 gH~~~V~~l~~s~dg~~LaSgs~Dg-~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~Dg~V~vwd~~~ 126 (751)
+|.+.|.-..+.-+++-++.|..|| .|-|+|..+++... + .+.-++|.+++.+|+ |++++.+-....+.+.|+.+
T Consensus 357 ~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~kr-~-e~~lg~I~av~vs~d--GK~~vvaNdr~el~vididn 432 (668)
T COG4946 357 GKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEVKR-I-EKDLGNIEAVKVSPD--GKKVVVANDRFELWVIDIDN 432 (668)
T ss_pred CCCCceEEEEEccCCcceEEeccCCceEEEEecCCceEEE-e-eCCccceEEEEEcCC--CcEEEEEcCceEEEEEEecC
Confidence 6888899999999999999999999 89999998776543 4 456789999999999 89999998888899999997
Q ss_pred CCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCC----cEEEEecCCCCC
Q 004477 127 FSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDG----TLRQHDFRQGSS 182 (751)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg----~I~iwDlr~~~~ 182 (751)
+.. ...-+...+-|+.+.|+| ++++||-+--+| .|+++|+..++.
T Consensus 433 gnv----------~~idkS~~~lItdf~~~~-nsr~iAYafP~gy~tq~Iklydm~~~Ki 481 (668)
T COG4946 433 GNV----------RLIDKSEYGLITDFDWHP-NSRWIAYAFPEGYYTQSIKLYDMDGGKI 481 (668)
T ss_pred CCe----------eEecccccceeEEEEEcC-CceeEEEecCcceeeeeEEEEecCCCeE
Confidence 532 222233456789999999 778888776655 688999988653
No 283
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=98.34 E-value=7.1e-05 Score=74.49 Aligned_cols=195 Identities=12% Similarity=0.092 Sum_probs=116.3
Q ss_pred CcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEecccC------CcceEEEEEecCCC-C---cEEEEEECCCcEE
Q 004477 51 GCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGH------SANVFCTKFVPETS-D---ELVVSGAGDAEVR 120 (751)
Q Consensus 51 ~~V~~l~~s~dg~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h------~~~V~~v~fsp~s~-~---~~l~sgs~Dg~V~ 120 (751)
..=..++||||+.+||.+...|+|+++|+.. ..+..+..++ ..+|..+.|.+... . ..|+.-..+|.++
T Consensus 44 PQWRkl~WSpD~tlLa~a~S~G~i~vfdl~g-~~lf~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~ 122 (282)
T PF15492_consen 44 PQWRKLAWSPDCTLLAYAESTGTIRVFDLMG-SELFVIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLR 122 (282)
T ss_pred chheEEEECCCCcEEEEEcCCCeEEEEeccc-ceeEEcCcccccCCccccceeeeEeeccccccccceeEEEEeccceee
Confidence 3445799999999999999999999999874 4444553332 35677777876521 0 1355556788888
Q ss_pred EEECCCCCCCCCCCCCCCCceeec---ccCCceeEEEEecCCCCEEEEEeC-CC----------cEEEEecCCCCCCCCC
Q 004477 121 LFNLSRFSGRGLDDNAITPSALYQ---CHTRRVKKLAVEVGNPHVVWSASE-DG----------TLRQHDFRQGSSCPPA 186 (751)
Q Consensus 121 vwd~~~~~~~~~~~~~~~~~~~~~---~h~~~V~~l~~sp~~~~~l~s~s~-Dg----------~I~iwDlr~~~~~~~~ 186 (751)
=|-+..++.+. +...+.+. .+...|.++.++|.. ++|+.||. .. -+..|.+-.+.+-...
T Consensus 123 Sy~vs~gt~q~-----y~e~hsfsf~~~yp~Gi~~~vy~p~h-~LLlVgG~~~~~~~~s~a~~~GLtaWRiL~~~Pyyk~ 196 (282)
T PF15492_consen 123 SYLVSVGTNQG-----YQENHSFSFSSHYPHGINSAVYHPKH-RLLLVGGCEQNQDGMSKASSCGLTAWRILSDSPYYKQ 196 (282)
T ss_pred eEEEEcccCCc-----ceeeEEEEecccCCCceeEEEEcCCC-CEEEEeccCCCCCccccccccCceEEEEcCCCCcEEE
Confidence 77764322111 12233332 246789999999944 56555543 22 2445655544332111
Q ss_pred CC-CCCcc-----ceEEEecccCceecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCccccC
Q 004477 187 GS-SHQEC-----RNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQ 255 (751)
Q Consensus 187 ~~-~~~~~-----~~~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~~~~~ 255 (751)
.. ..... +.-++.+.. .............|..|.++| ++..||+...+|.|.+|++-++....+..
T Consensus 197 v~~~~~~~~~~~~~~~~~~~~~--~~~fs~~~~~~d~i~kmSlSP-dg~~La~ih~sG~lsLW~iPsL~~~~~W~ 268 (282)
T PF15492_consen 197 VTSSEDDITASSKRRGLLRIPS--FKFFSRQGQEQDGIFKMSLSP-DGSLLACIHFSGSLSLWEIPSLRLQRSWK 268 (282)
T ss_pred ccccCccccccccccceeeccc--eeeeeccccCCCceEEEEECC-CCCEEEEEEcCCeEEEEecCcchhhcccc
Confidence 00 00000 001111111 000111122467899999999 58999999999999999999887655543
No 284
>PRK01029 tolB translocation protein TolB; Provisional
Probab=98.34 E-value=2.7e-05 Score=86.37 Aligned_cols=164 Identities=15% Similarity=0.070 Sum_probs=94.6
Q ss_pred CCCcEEEEEECCCCCEEEEEeC-----CCcEEEEeCCCC--eEEEEecccCCcceEEEEEecCCCCcEEEEEE-CCCcEE
Q 004477 49 HQGCVNAISWNSKGSLLISGSD-----DTHINVWSYSSR--KLLHSIETGHSANVFCTKFVPETSDELVVSGA-GDAEVR 120 (751)
Q Consensus 49 H~~~V~~l~~s~dg~~LaSgs~-----Dg~I~IWd~~~~--~~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs-~Dg~V~ 120 (751)
..+.....+|||||+.||..+. |..+.+|++..+ .....+..++.+.....+|+|+ |+.|+..+ .++...
T Consensus 229 ~~g~~~~p~wSPDG~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPD--G~~Laf~s~~~g~~~ 306 (428)
T PRK01029 229 LQGNQLMPTFSPRKKLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPD--GTRLVFVSNKDGRPR 306 (428)
T ss_pred CCCCccceEECCCCCEEEEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEECCC--CCEEEEEECCCCCce
Confidence 3445557899999998886653 333455776642 2223331233344567899999 77766554 567666
Q ss_pred EEECCCCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEe-CC--CcEEEEecCCCCCCCCCCCCCCccceEE
Q 004477 121 LFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSAS-ED--GTLRQHDFRQGSSCPPAGSSHQECRNIL 197 (751)
Q Consensus 121 vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s-~D--g~I~iwDlr~~~~~~~~~~~~~~~~~~l 197 (751)
||.+...... .....+..+...+....|+|+ ++.|+..+ .+ ..|.+||+.+++..
T Consensus 307 ly~~~~~~~g-------~~~~~lt~~~~~~~~p~wSPD-G~~Laf~~~~~g~~~I~v~dl~~g~~~-------------- 364 (428)
T PRK01029 307 IYIMQIDPEG-------QSPRLLTKKYRNSSCPAWSPD-GKKIAFCSVIKGVRQICVYDLATGRDY-------------- 364 (428)
T ss_pred EEEEECcccc-------cceEEeccCCCCccceeECCC-CCEEEEEEcCCCCcEEEEEECCCCCeE--------------
Confidence 6654321100 113334445566778899995 55555444 33 35888888776521
Q ss_pred EecccCceecccCCCCCccceEEEEEeCCCCcEEEE-EeC--CCeEEEEeCCCCC
Q 004477 198 LDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLV-GGS--DAFARLYDRRMLP 249 (751)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~s-gs~--D~~IriwD~~~~~ 249 (751)
.+.. ....+....|+|+ ++.|+. +.. ...|.++|+...+
T Consensus 365 ---------~Lt~---~~~~~~~p~wSpD-G~~L~f~~~~~g~~~L~~vdl~~g~ 406 (428)
T PRK01029 365 ---------QLTT---SPENKESPSWAID-SLHLVYSAGNSNESELYLISLITKK 406 (428)
T ss_pred ---------EccC---CCCCccceEECCC-CCEEEEEECCCCCceEEEEECCCCC
Confidence 1111 1123456789995 566554 332 3568888886543
No 285
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=98.32 E-value=1.4e-06 Score=87.76 Aligned_cols=162 Identities=15% Similarity=0.138 Sum_probs=111.6
Q ss_pred EEEecCCCCcEEEEEECCCcEEEEECCCCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEecC
Q 004477 99 TKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFR 178 (751)
Q Consensus 99 v~fsp~s~~~~l~sgs~Dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr 178 (751)
++|+-+..+.. ++.+.+..|-+-|+.++- .+.|. ....|.++.|.. .+.++..|...|.|..+|+|
T Consensus 217 CawSlni~gyh-fs~G~sqqv~L~nvetg~-----------~qsf~-sksDVfAlQf~~-s~nLv~~GcRngeI~~iDLR 282 (425)
T KOG2695|consen 217 CAWSLNIMGYH-FSVGLSQQVLLTNVETGH-----------QQSFQ-SKSDVFALQFAG-SDNLVFNGCRNGEIFVIDLR 282 (425)
T ss_pred hhhhhccceee-ecccccceeEEEEeeccc-----------ccccc-cchhHHHHHhcc-cCCeeEecccCCcEEEEEee
Confidence 35654432333 566778888899988642 23333 567788888987 45788899999999999999
Q ss_pred CCCCCCCCCCCCCccceEEEecccCceecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCccccCCCC
Q 004477 179 QGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRM 258 (751)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~~~~~~~~ 258 (751)
... .+...+...++ |...|+++..-..+..+|++.+.+|+|++||.|..+....
T Consensus 283 ~rn------qG~~~~a~rly---------------h~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~----- 336 (425)
T KOG2695|consen 283 CRN------QGNGWCAQRLY---------------HDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRATKCKKS----- 336 (425)
T ss_pred ecc------cCCCcceEEEE---------------cCcchhhhhhhccccceEeeccCcCceeEeeehhhhcccc-----
Confidence 874 23344545554 6677888776654467899999999999999998764211
Q ss_pred CCCCccccccccccccCCccccc-eEEEEEcCCCCEEEEEeCCCcEEEEECCCCC
Q 004477 259 SPPPCVNYFCPMHLSEHGRSSLH-LTHVTFSPNGEEVLLSYSGEHVYLMDVNHAG 312 (751)
Q Consensus 259 ~~~~~~~~~~~~~~~~~g~~~~~-vt~v~fspdg~~Ll~~s~d~~I~lwdl~~~~ 312 (751)
+..+ .||.+.. -.-+...+....+++++.|...+||.++.+.
T Consensus 337 -----V~qY-------eGHvN~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~~gh 379 (425)
T KOG2695|consen 337 -----VMQY-------EGHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIWSLDSGH 379 (425)
T ss_pred -----eeee-------ecccccccccccccccccceEEEccCeeEEEEEecccCc
Confidence 2222 2332211 1223455677788899999999999999864
No 286
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=98.31 E-value=2.4e-06 Score=82.95 Aligned_cols=167 Identities=20% Similarity=0.216 Sum_probs=104.5
Q ss_pred CCCCEEEEEeC-----CCcEEEEeCCCCeEEEEecccCCcceEEEEEecCCCCcEEEEEECCCcEEEEECCCCCCCCCCC
Q 004477 60 SKGSLLISGSD-----DTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDD 134 (751)
Q Consensus 60 ~dg~~LaSgs~-----Dg~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~Dg~V~vwd~~~~~~~~~~~ 134 (751)
..++.|.++.. -+..++|++...+.+..-.+. ...|.+++-+|.. ..++++|+.||.|-|||.+...
T Consensus 142 ~~~~~i~s~~~g~~n~~d~~~a~~~~p~~t~~~~~~~-~~~v~~l~~hp~q-q~~v~cgt~dg~~~l~d~rn~~------ 213 (319)
T KOG4714|consen 142 RHGNSILSGGCGNWNAQDNFYANTLDPIKTLIPSKKA-LDAVTALCSHPAQ-QHLVCCGTDDGIVGLWDARNVA------ 213 (319)
T ss_pred ecccEEecCCcceEeeccceeeecccccccccccccc-cccchhhhCCccc-ccEEEEecCCCeEEEEEccccc------
Confidence 34555555432 224556665433222211112 2349999999986 6788899999999999998642
Q ss_pred CCCCCceeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCCCCCCCCCCccceEEEec---ccCceecccCC
Q 004477 135 NAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDL---RCGAKRSLADP 211 (751)
Q Consensus 135 ~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~~~~~~~~~~~~l~~~---~~~~~~~~~~~ 211 (751)
.+...+..|+.+++.+.|+|.++..|.++++||.+..||..+.-.. ...+......|-. .......-...
T Consensus 214 ---~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wdas~~~l~----i~~~~s~~s~WLsgD~v~s~i~i~~ll 286 (319)
T KOG4714|consen 214 ---MPVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDASTTFLS----ISNQASVISSWLSGDPVKSRIEITSLL 286 (319)
T ss_pred ---chHHHHHHhhhhhhheeccCCCchheeEecCCCcEEEEcCCCceEE----ecCccccccccccCCcccceEeeeccc
Confidence 5678899999999999999999999999999999999998752110 0011111111100 00001111122
Q ss_pred CCCccceEEEEEeCCCCcEEEEEeCCCeEEEEe
Q 004477 212 PKQTLSLKSCDISSTRPHLLLVGGSDAFARLYD 244 (751)
Q Consensus 212 ~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD 244 (751)
+.....|+++++. +..+++|+.-+.|++++
T Consensus 287 ~~~~~SinsfDV~---g~~lVcgtd~eaIyl~~ 316 (319)
T KOG4714|consen 287 PSRSLSINSFDVL---GPCLVCGTDAEAIYLTR 316 (319)
T ss_pred cccceeeeeeecc---CceEEeccccceEEEec
Confidence 3334456666654 46899998888888875
No 287
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=98.31 E-value=0.0007 Score=69.56 Aligned_cols=253 Identities=13% Similarity=0.131 Sum_probs=158.7
Q ss_pred ccCCCcEEEEEECCCCCEEEEEeC---CCcEEEEeCCC--CeEEE--EecccCCcceEEEEEecCCCCcEEEEEEC-CCc
Q 004477 47 EGHQGCVNAISWNSKGSLLISGSD---DTHINVWSYSS--RKLLH--SIETGHSANVFCTKFVPETSDELVVSGAG-DAE 118 (751)
Q Consensus 47 ~gH~~~V~~l~~s~dg~~LaSgs~---Dg~I~IWd~~~--~~~~~--~l~~~h~~~V~~v~fsp~s~~~~l~sgs~-Dg~ 118 (751)
-.+.+.++-|+|+|++++|-++-. +|.|.-|.+.. |++.. .. ..-..+-..|+++++ +++|+++.. -|.
T Consensus 36 v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~-~~~g~~p~yvsvd~~--g~~vf~AnY~~g~ 112 (346)
T COG2706 36 VAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQ-TLPGSPPCYVSVDED--GRFVFVANYHSGS 112 (346)
T ss_pred ccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeecc-ccCCCCCeEEEECCC--CCEEEEEEccCce
Confidence 346778899999999999988865 47777776653 54322 11 112233378899998 888888765 578
Q ss_pred EEEEECCCCCCCCCCCCCCCCceeecccCCc----------eeEEEEecCCCCEEEEEeC-CCcEEEEecCCCCCCCCCC
Q 004477 119 VRLFNLSRFSGRGLDDNAITPSALYQCHTRR----------VKKLAVEVGNPHVVWSASE-DGTLRQHDFRQGSSCPPAG 187 (751)
Q Consensus 119 V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~----------V~~l~~sp~~~~~l~s~s~-Dg~I~iwDlr~~~~~~~~~ 187 (751)
|.++-+... +.. ........|.+. +....+.| ++++|+++.. --.|.+|++..+...+...
T Consensus 113 v~v~p~~~d-G~l------~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP-~~~~l~v~DLG~Dri~~y~~~dg~L~~~~~ 184 (346)
T COG2706 113 VSVYPLQAD-GSL------QPVVQVVKHTGSGPHERQESPHVHSANFTP-DGRYLVVPDLGTDRIFLYDLDDGKLTPADP 184 (346)
T ss_pred EEEEEcccC-Ccc------ccceeeeecCCCCCCccccCCccceeeeCC-CCCEEEEeecCCceEEEEEcccCccccccc
Confidence 999998752 322 222223335555 88889999 5566666542 2368899999776432110
Q ss_pred CCCCccceEEEecccCceecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCC-CCccccCCCCCCCCcccc
Q 004477 188 SSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRML-PPLTSCQKRMSPPPCVNY 266 (751)
Q Consensus 188 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~-~~~~~~~~~~~~~~~~~~ 266 (751)
. . + .....-..|.|+|+..-..++.--+++|-+|..... ..+..++.-...
T Consensus 185 ~----------~--------v----~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tl------ 236 (346)
T COG2706 185 A----------E--------V----KPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTL------ 236 (346)
T ss_pred c----------c--------c----CCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccC------
Confidence 0 0 0 123445779999964444555667999999998764 222222211111
Q ss_pred ccccccccCCccccceEEEEEcCCCCEEEEEeC-CCcEEEEECCCCCccee----eeecCCCceeEEeCCCCCCcccCCC
Q 004477 267 FCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYS-GEHVYLMDVNHAGGRAM----RYTVGDASKIMSFTPTLNGLELQPP 341 (751)
Q Consensus 267 ~~~~~~~~~g~~~~~vt~v~fspdg~~Ll~~s~-d~~I~lwdl~~~~~~~~----~~~~~~~~~~~~~sp~~~~~~~~~~ 341 (751)
|... .| ..+...|..+|||++|.++-. ...|-+|.+........ ....+..++.+.++|..+-+..+..
T Consensus 237 --P~dF--~g--~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~~g~~Liaa~q 310 (346)
T COG2706 237 --PEDF--TG--TNWAAAIHISPDGRFLYASNRGHDSIAVFSVDPDGGKLELVGITPTEGQFPRDFNINPSGRFLIAANQ 310 (346)
T ss_pred --cccc--CC--CCceeEEEECCCCCEEEEecCCCCeEEEEEEcCCCCEEEEEEEeccCCcCCccceeCCCCCEEEEEcc
Confidence 1111 11 224788999999999998865 56899998886532221 2233556888888888877766555
Q ss_pred ccc
Q 004477 342 IHD 344 (751)
Q Consensus 342 ~~~ 344 (751)
.++
T Consensus 311 ~sd 313 (346)
T COG2706 311 KSD 313 (346)
T ss_pred CCC
Confidence 443
No 288
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.30 E-value=2.2e-06 Score=60.03 Aligned_cols=39 Identities=23% Similarity=0.598 Sum_probs=35.9
Q ss_pred CeEEEEecccCCcceEEEEEecCCCCcEEEEEECCCcEEEEE
Q 004477 82 RKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFN 123 (751)
Q Consensus 82 ~~~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~Dg~V~vwd 123 (751)
++++.++ .+|.+.|++++|+|+ +.+|+||+.|++|++||
T Consensus 1 g~~~~~~-~~h~~~i~~i~~~~~--~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 1 GKCVRTF-RGHSSSINSIAWSPD--GNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEE-ESSSSSEEEEEEETT--SSEEEEEETTSEEEEEE
T ss_pred CeEEEEE-cCCCCcEEEEEEecc--cccceeeCCCCEEEEEC
Confidence 3567778 899999999999999 79999999999999997
No 289
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=98.29 E-value=1.7e-05 Score=85.60 Aligned_cols=128 Identities=13% Similarity=0.142 Sum_probs=107.3
Q ss_pred hccccccEEec--cCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEecccCCcceEEEEEecCCCCcEEEEEE
Q 004477 37 VRRLSQERELE--GHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGA 114 (751)
Q Consensus 37 i~~~~~~~~L~--gH~~~V~~l~~s~dg~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs 114 (751)
+...++...|. .|.+.|+++.|+.+-..|-|++.|+.+..|+......+... .+-...+.+++.+|+ +..+++|+
T Consensus 87 ~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~-~~~~~~~~sl~is~D--~~~l~~as 163 (541)
T KOG4547|consen 87 VAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRIW-KEQKPLVSSLCISPD--GKILLTAS 163 (541)
T ss_pred ecCCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccceeeeee-ccCCCccceEEEcCC--CCEEEecc
Confidence 33444555554 69999999999999999999999999999999998888888 788889999999999 78999886
Q ss_pred CCCcEEEEECCCCCCCCCCCCCCCCceeecccCCceeEEEEecC-----CCCEEEEEeCCCcEEEEecCC
Q 004477 115 GDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVG-----NPHVVWSASEDGTLRQHDFRQ 179 (751)
Q Consensus 115 ~Dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~-----~~~~l~s~s~Dg~I~iwDlr~ 179 (751)
+.|++||+++. +.+.+|.+|.++|.+++|... +.++|.+...+.-|.+|-++.
T Consensus 164 --~~ik~~~~~~k----------evv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~ 221 (541)
T KOG4547|consen 164 --RQIKVLDIETK----------EVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEK 221 (541)
T ss_pred --ceEEEEEccCc----------eEEEEecCCCcceEEEEEEEeccccccceeeeccccccceeEEEEEc
Confidence 78999999975 668999999999999999763 234555566677788887766
No 290
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=98.24 E-value=0.00067 Score=72.09 Aligned_cols=234 Identities=10% Similarity=0.087 Sum_probs=132.9
Q ss_pred CcEEEEeCCCCeEEEEecccCCcceEEEEEecCCCCcEEEEE-E---------CCCcEEEEECCCCCCCCCCCCCCCCce
Q 004477 72 THINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSG-A---------GDAEVRLFNLSRFSGRGLDDNAITPSA 141 (751)
Q Consensus 72 g~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~s~~~~l~sg-s---------~Dg~V~vwd~~~~~~~~~~~~~~~~~~ 141 (751)
++|.|.|..+++.+..+..|..... + ++|+ ++.|+.+ + .+..|.|||+.+. +.+.
T Consensus 27 ~~v~ViD~~~~~v~g~i~~G~~P~~--~-~spD--g~~lyva~~~~~R~~~G~~~d~V~v~D~~t~----------~~~~ 91 (352)
T TIGR02658 27 TQVYTIDGEAGRVLGMTDGGFLPNP--V-VASD--GSFFAHASTVYSRIARGKRTDYVEVIDPQTH----------LPIA 91 (352)
T ss_pred ceEEEEECCCCEEEEEEEccCCCce--e-ECCC--CCEEEEEeccccccccCCCCCEEEEEECccC----------cEEe
Confidence 8999999999999999866654443 4 9999 6666655 4 5889999999975 3333
Q ss_pred eeccc-------CCceeEEEEecCCCCEEEEEe-C-CCcEEEEecCCCCCCCCCCCCCCccceEEEe--------cccCc
Q 004477 142 LYQCH-------TRRVKKLAVEVGNPHVVWSAS-E-DGTLRQHDFRQGSSCPPAGSSHQECRNILLD--------LRCGA 204 (751)
Q Consensus 142 ~~~~h-------~~~V~~l~~sp~~~~~l~s~s-~-Dg~I~iwDlr~~~~~~~~~~~~~~~~~~l~~--------~~~~~ 204 (751)
.+.-- ......++++|+ +++++... . +..|-+.|+.+++....... ..|..++.. ...+.
T Consensus 92 ~i~~p~~p~~~~~~~~~~~~ls~d-gk~l~V~n~~p~~~V~VvD~~~~kvv~ei~v--p~~~~vy~t~e~~~~~~~~Dg~ 168 (352)
T TIGR02658 92 DIELPEGPRFLVGTYPWMTSLTPD-NKTLLFYQFSPSPAVGVVDLEGKAFVRMMDV--PDCYHIFPTANDTFFMHCRDGS 168 (352)
T ss_pred EEccCCCchhhccCccceEEECCC-CCEEEEecCCCCCEEEEEECCCCcEEEEEeC--CCCcEEEEecCCccEEEeecCc
Confidence 33321 122346889995 45554443 3 78999999999875432211 112222111 11111
Q ss_pred eecccCCCCCccceEEE--------------EEeCCCCcEEEEEeCCCeEEEEeCCCCCCccccCCCCCCCCcccccccc
Q 004477 205 KRSLADPPKQTLSLKSC--------------DISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPM 270 (751)
Q Consensus 205 ~~~~~~~~~~~~~v~~i--------------~~sp~~~~~l~sgs~D~~IriwD~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (751)
...+.........+... .|.+.++.++.+... |.|.+.|+......... .+..+...
T Consensus 169 ~~~v~~d~~g~~~~~~~~vf~~~~~~v~~rP~~~~~dg~~~~vs~e-G~V~~id~~~~~~~~~~--------~~~~~~~~ 239 (352)
T TIGR02658 169 LAKVGYGTKGNPKIKPTEVFHPEDEYLINHPAYSNKSGRLVWPTYT-GKIFQIDLSSGDAKFLP--------AIEAFTEA 239 (352)
T ss_pred eEEEEecCCCceEEeeeeeecCCccccccCCceEcCCCcEEEEecC-CeEEEEecCCCcceecc--------eeeecccc
Confidence 11100000000001111 345535667766666 99999996543311100 00000000
Q ss_pred ccccCCccccceEEEEEcCCCCEEEEEeC----------CCcEEEEECCCCCcceeeeecCCCceeEEeCCCCC
Q 004477 271 HLSEHGRSSLHLTHVTFSPNGEEVLLSYS----------GEHVYLMDVNHAGGRAMRYTVGDASKIMSFTPTLN 334 (751)
Q Consensus 271 ~~~~~g~~~~~vt~v~fspdg~~Ll~~s~----------d~~I~lwdl~~~~~~~~~~~~~~~~~~~~~sp~~~ 334 (751)
.. ..+-....+.-++++|+|++|++... .+.|.++|..+.+ .......+..+..++++|+.+
T Consensus 240 ~~-~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~k-vi~~i~vG~~~~~iavS~Dgk 311 (352)
T TIGR02658 240 EK-ADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTGK-RLRKIELGHEIDSINVSQDAK 311 (352)
T ss_pred cc-ccccCCCcceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEECCCCe-EEEEEeCCCceeeEEECCCCC
Confidence 00 00111112445999999999998542 2589999998854 444455577888999999987
No 291
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=98.24 E-value=1.2e-05 Score=87.83 Aligned_cols=253 Identities=11% Similarity=0.114 Sum_probs=155.2
Q ss_pred hhccccccEEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEe-cccCCcceEEEEEecCCCCcEEEEEE
Q 004477 36 LVRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSI-ETGHSANVFCTKFVPETSDELVVSGA 114 (751)
Q Consensus 36 ~i~~~~~~~~L~gH~~~V~~l~~s~dg~~LaSgs~Dg~I~IWd~~~~~~~~~l-~~~h~~~V~~v~fsp~s~~~~l~sgs 114 (751)
....+..-++|+||++.|.-+.|+.+.+.|-|...+|.|+||-+..|.....+ ....+..|.++.|..+ |..|+..-
T Consensus 57 a~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt~GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~d--G~kIcIvY 134 (1189)
T KOG2041|consen 57 AASNLSMNQTLEGHNASVMVVTWNENNQKLTTSDTSGLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLD--GTKICIVY 134 (1189)
T ss_pred cccccchhhhhccCcceEEEEEeccccccccccCCCceEEEEeeecccHHHHHhhCcCccEEEEEEEcCC--CcEEEEEE
Confidence 35566777899999999999999999999999999999999999887654333 2345678999999999 89999999
Q ss_pred CCCcEEEEECCCCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCCCCCCCCCCccc
Q 004477 115 GDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECR 194 (751)
Q Consensus 115 ~Dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~~~~~~~~~~ 194 (751)
.||.|.|=.++... + --+.++ ......+.|++ +..+++.+-..|.+.+||........ -+.+|.
T Consensus 135 eDGavIVGsvdGNR---I------wgKeLk--g~~l~hv~ws~-D~~~~Lf~~ange~hlydnqgnF~~K----l~~~c~ 198 (1189)
T KOG2041|consen 135 EDGAVIVGSVDGNR---I------WGKELK--GQLLAHVLWSE-DLEQALFKKANGETHLYDNQGNFERK----LEKDCE 198 (1189)
T ss_pred ccCCEEEEeeccce---e------cchhcc--hheccceeecc-cHHHHHhhhcCCcEEEecccccHHHh----hhhceE
Confidence 99999877665321 0 001111 11233678999 44666677788999999977643221 111221
Q ss_pred eEEEecccCceecccCCCCCccceEEEEEe-------CCCCcEEEEEeCCCeEEEEeCCCCCCccccCCCCCCCCccccc
Q 004477 195 NILLDLRCGAKRSLADPPKQTLSLKSCDIS-------STRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYF 267 (751)
Q Consensus 195 ~~l~~~~~~~~~~~~~~~~~~~~v~~i~~s-------p~~~~~l~sgs~D~~IriwD~~~~~~~~~~~~~~~~~~~~~~~ 267 (751)
.......+. ....+..+.|+ |.+.-.++++-..|.+.|..-.+...
T Consensus 199 Vn~tg~~s~----------~~~kia~i~w~~g~~~~v~pdrP~lavcy~nGr~QiMR~eND~~----------------- 251 (1189)
T KOG2041|consen 199 VNGTGIFSN----------FPTKIAEIEWNTGPYQPVPPDRPRLAVCYANGRMQIMRSENDPE----------------- 251 (1189)
T ss_pred EeeeeeecC----------CCccccceeeccCccccCCCCCCEEEEEEcCceehhhhhcCCCC-----------------
Confidence 111111111 11123334443 21345788888888777643322110
Q ss_pred cccccccCCccccceEEEEEcCCCCEEEEEeCCC---------cEEEEECCCCCcceeeeecCCCceeEEeCCCCCCccc
Q 004477 268 CPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGE---------HVYLMDVNHAGGRAMRYTVGDASKIMSFTPTLNGLEL 338 (751)
Q Consensus 268 ~~~~~~~~g~~~~~vt~v~fspdg~~Ll~~s~d~---------~I~lwdl~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~ 338 (751)
|... ..+..+..+.|+++|..|++++.+. .|.+|..-. .........+..+..++|-..+-.++.
T Consensus 252 -Pvv~----dtgm~~vgakWnh~G~vLAvcG~~~da~~~~d~n~v~Fysp~G-~i~gtlkvpg~~It~lsWEg~gLriA~ 325 (1189)
T KOG2041|consen 252 -PVVV----DTGMKIVGAKWNHNGAVLAVCGNDSDADEPTDSNKVHFYSPYG-HIVGTLKVPGSCITGLSWEGTGLRIAI 325 (1189)
T ss_pred -CeEE----ecccEeecceecCCCcEEEEccCcccccCccccceEEEeccch-hheEEEecCCceeeeeEEcCCceEEEE
Confidence 0000 1123588999999999999998742 455554333 222333334455556666555444443
Q ss_pred C
Q 004477 339 Q 339 (751)
Q Consensus 339 ~ 339 (751)
+
T Consensus 326 A 326 (1189)
T KOG2041|consen 326 A 326 (1189)
T ss_pred E
Confidence 3
No 292
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=98.24 E-value=9.9e-06 Score=88.45 Aligned_cols=241 Identities=12% Similarity=0.149 Sum_probs=156.7
Q ss_pred CCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCe---------------EEEEecccCCcceEEEEEecCCCCcEEEEEE
Q 004477 50 QGCVNAISWNSKGSLLISGSDDTHINVWSYSSRK---------------LLHSIETGHSANVFCTKFVPETSDELVVSGA 114 (751)
Q Consensus 50 ~~~V~~l~~s~dg~~LaSgs~Dg~I~IWd~~~~~---------------~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs 114 (751)
....+|++|+....++|.|+.||.++|-.+.+.. .-+++ .||.+.|.-+.|... .+.|-|..
T Consensus 14 nvkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtL-eGH~~sV~vvTWNe~--~QKLTtSD 90 (1189)
T KOG2041|consen 14 NVKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTL-EGHNASVMVVTWNEN--NQKLTTSD 90 (1189)
T ss_pred CceEEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhh-ccCcceEEEEEeccc--cccccccC
Confidence 4567899999999999999999999999775421 11233 699999999999988 68999999
Q ss_pred CCCcEEEEECCCCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCCCCCCCCCCccc
Q 004477 115 GDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECR 194 (751)
Q Consensus 115 ~Dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~~~~~~~~~~ 194 (751)
.+|.|.||-+-.++--. --.-......|.+++|+. +|..+...-+||.|.+=.+....
T Consensus 91 t~GlIiVWmlykgsW~E--------EMiNnRnKSvV~SmsWn~-dG~kIcIvYeDGavIVGsvdGNR------------- 148 (1189)
T KOG2041|consen 91 TSGLIIVWMLYKGSWCE--------EMINNRNKSVVVSMSWNL-DGTKICIVYEDGAVIVGSVDGNR------------- 148 (1189)
T ss_pred CCceEEEEeeecccHHH--------HHhhCcCccEEEEEEEcC-CCcEEEEEEccCCEEEEeeccce-------------
Confidence 99999999998643110 011123456789999998 66788888999998876665432
Q ss_pred eEEEecccCceecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCccccCCCCCCCCcccccccccccc
Q 004477 195 NILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSE 274 (751)
Q Consensus 195 ~~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (751)
+|+-. -.......+.|+++ .+.++.+-..|.+.+||....=. .++. ..|.... .+....
T Consensus 149 --IwgKe-----------Lkg~~l~hv~ws~D-~~~~Lf~~ange~hlydnqgnF~-~Kl~-----~~c~Vn~-tg~~s~ 207 (1189)
T KOG2041|consen 149 --IWGKE-----------LKGQLLAHVLWSED-LEQALFKKANGETHLYDNQGNFE-RKLE-----KDCEVNG-TGIFSN 207 (1189)
T ss_pred --ecchh-----------cchheccceeeccc-HHHHHhhhcCCcEEEecccccHH-Hhhh-----hceEEee-eeeecC
Confidence 22110 01223457789994 67888888889999999752100 0000 0010000 000001
Q ss_pred CCccccceEEEEEc--------CCCCEEEEEeCCCcEEEEECCCCCcceeeeecCCCceeEEeCCCCCCcccCC
Q 004477 275 HGRSSLHLTHVTFS--------PNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVGDASKIMSFTPTLNGLELQP 340 (751)
Q Consensus 275 ~g~~~~~vt~v~fs--------pdg~~Ll~~s~d~~I~lwdl~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~ 340 (751)
.+| .|..+.|. ||-..|+++...|.+.|..-.+.. .++.+..+-.+....|++++.-++...
T Consensus 208 ~~~---kia~i~w~~g~~~~v~pdrP~lavcy~nGr~QiMR~eND~-~Pvv~dtgm~~vgakWnh~G~vLAvcG 277 (1189)
T KOG2041|consen 208 FPT---KIAEIEWNTGPYQPVPPDRPRLAVCYANGRMQIMRSENDP-EPVVVDTGMKIVGAKWNHNGAVLAVCG 277 (1189)
T ss_pred CCc---cccceeeccCccccCCCCCCEEEEEEcCceehhhhhcCCC-CCeEEecccEeecceecCCCcEEEEcc
Confidence 111 13344443 588899999999999998766633 445555555555566777665554443
No 293
>PRK04043 tolB translocation protein TolB; Provisional
Probab=98.24 E-value=0.00045 Score=76.30 Aligned_cols=193 Identities=9% Similarity=0.066 Sum_probs=111.4
Q ss_pred cEEEEEECCCCCE-EEEEeC---CCcEEEEeCCCCeEEEEecccCCcceEEEEEecCCCCcEE-EEEECC--CcEEEEEC
Q 004477 52 CVNAISWNSKGSL-LISGSD---DTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELV-VSGAGD--AEVRLFNL 124 (751)
Q Consensus 52 ~V~~l~~s~dg~~-LaSgs~---Dg~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~s~~~~l-~sgs~D--g~V~vwd~ 124 (751)
.+..-.|+|||+. ++..+. +..|.++|+.+++..... ...+.+....|+|+ |+.| ++.+.+ ..|.++|+
T Consensus 189 ~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt--~~~g~~~~~~~SPD--G~~la~~~~~~g~~~Iy~~dl 264 (419)
T PRK04043 189 LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIA--SSQGMLVVSDVSKD--GSKLLLTMAPKGQPDIYLYDT 264 (419)
T ss_pred CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEe--cCCCcEEeeEECCC--CCEEEEEEccCCCcEEEEEEC
Confidence 6778999999984 664443 356888999887654433 34566677889999 6544 455444 45677777
Q ss_pred CCCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCC--cEEEEecCCCCCCCCCCCCCCccceEEEeccc
Q 004477 125 SRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDG--TLRQHDFRQGSSCPPAGSSHQECRNILLDLRC 202 (751)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg--~I~iwDlr~~~~~~~~~~~~~~~~~~l~~~~~ 202 (751)
..+. ...+..+........|+|++..++++....| .|.+.|+.+++..
T Consensus 265 ~~g~-----------~~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~------------------- 314 (419)
T PRK04043 265 NTKT-----------LTQITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVE------------------- 314 (419)
T ss_pred CCCc-----------EEEcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeE-------------------
Confidence 6432 2233333333345679996555555554444 4666666655421
Q ss_pred CceecccCCCCCccceEEEEEeCCCCcEEEEEeCC---------CeEEEEeCCCCCCccccCCCCCCCCccccccccccc
Q 004477 203 GAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSD---------AFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLS 273 (751)
Q Consensus 203 ~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D---------~~IriwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (751)
.+.... . . ...|+|+ +++|+..+.. ..|.+.|+..+... . +.
T Consensus 315 ----rlt~~g-~--~--~~~~SPD-G~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~~-~-------------LT----- 365 (419)
T PRK04043 315 ----QVVFHG-K--N--NSSVSTY-KNYIVYSSRETNNEFGKNTFNLYLISTNSDYIR-R-------------LT----- 365 (419)
T ss_pred ----eCccCC-C--c--CceECCC-CCEEEEEEcCCCcccCCCCcEEEEEECCCCCeE-E-------------CC-----
Confidence 111110 1 1 1379996 5655554433 36777787655321 0 10
Q ss_pred cCCccccceEEEEEcCCCCEEEEEeCC---CcEEEEECCCC
Q 004477 274 EHGRSSLHLTHVTFSPNGEEVLLSYSG---EHVYLMDVNHA 311 (751)
Q Consensus 274 ~~g~~~~~vt~v~fspdg~~Ll~~s~d---~~I~lwdl~~~ 311 (751)
..+ ......|+|||+.|+..... ..+.+.+++..
T Consensus 366 ~~~----~~~~p~~SPDG~~I~f~~~~~~~~~L~~~~l~g~ 402 (419)
T PRK04043 366 ANG----VNQFPRFSSDGGSIMFIKYLGNQSALGIIRLNYN 402 (419)
T ss_pred CCC----CcCCeEECCCCCEEEEEEccCCcEEEEEEecCCC
Confidence 001 12247899999988766542 34777777663
No 294
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=98.23 E-value=2.6e-05 Score=87.75 Aligned_cols=186 Identities=16% Similarity=0.209 Sum_probs=133.3
Q ss_pred CCCEEEEEeCCCcEEEEeCCCCeEEEEecccCCcceEEEEEecCCCCcEEEEEECCCcEEEEECCCCCCCCCCCCCCCCc
Q 004477 61 KGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPS 140 (751)
Q Consensus 61 dg~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~Dg~V~vwd~~~~~~~~~~~~~~~~~ 140 (751)
++..++-|+--..+..+|+.+.+..... .-..+.|+-++.. ++++.+|...|+|.+-|..+. +.+
T Consensus 146 ~~~~~i~Gg~Q~~li~~Dl~~~~e~r~~-~v~a~~v~imR~N----nr~lf~G~t~G~V~LrD~~s~----------~~i 210 (1118)
T KOG1275|consen 146 GPSTLIMGGLQEKLIHIDLNTEKETRTT-NVSASGVTIMRYN----NRNLFCGDTRGTVFLRDPNSF----------ETI 210 (1118)
T ss_pred CCcceeecchhhheeeeecccceeeeee-eccCCceEEEEec----CcEEEeecccceEEeecCCcC----------cee
Confidence 4567777777778888898877766655 2223335555533 689999999999999999875 779
Q ss_pred eeecccCCceeEEEEecCCCCEEEEEeC---------CCcEEEEecCCCCCCCCCCCCCCccceEEEecccCceecccCC
Q 004477 141 ALYQCHTRRVKKLAVEVGNPHVVWSASE---------DGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADP 211 (751)
Q Consensus 141 ~~~~~h~~~V~~l~~sp~~~~~l~s~s~---------Dg~I~iwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 211 (751)
+++.+|++.|..+.. .+++|++||. |..|++||+|..+.+.+....
T Consensus 211 ht~~aHs~siSDfDv---~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~---------------------- 265 (1118)
T KOG1275|consen 211 HTFDAHSGSISDFDV---QGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFP---------------------- 265 (1118)
T ss_pred eeeeccccceeeeec---cCCeEEEeecccccccccccchhhhhhhhhhhccCCcccc----------------------
Confidence 999999999988876 4578888876 556899999987754322110
Q ss_pred CCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCccccCCCCCCCCccccccccccccCCccccceEEEEEcCCC
Q 004477 212 PKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNG 291 (751)
Q Consensus 212 ~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~vt~v~fspdg 291 (751)
..-.-+.|.|.=...+++++..|...+-|..+... |+..+..+.| .+..+..+.+|++|
T Consensus 266 ----~~P~flrf~Psl~t~~~V~S~sGq~q~vd~~~lsN---------P~~~~~~v~p--------~~s~i~~fDiSsn~ 324 (1118)
T KOG1275|consen 266 ----YGPQFLRFHPSLTTRLAVTSQSGQFQFVDTATLSN---------PPAGVKMVNP--------NGSGISAFDISSNG 324 (1118)
T ss_pred ----cCchhhhhcccccceEEEEecccceeeccccccCC---------CccceeEEcc--------CCCcceeEEecCCC
Confidence 11133567776677899999999999998554321 1111222211 11138999999999
Q ss_pred CEEEEEeCCCcEEEEE
Q 004477 292 EEVLLSYSGEHVYLMD 307 (751)
Q Consensus 292 ~~Ll~~s~d~~I~lwd 307 (751)
+.++.+-.+|.|.+|-
T Consensus 325 ~alafgd~~g~v~~wa 340 (1118)
T KOG1275|consen 325 DALAFGDHEGHVNLWA 340 (1118)
T ss_pred ceEEEecccCcEeeec
Confidence 9999999999999997
No 295
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=98.16 E-value=0.00032 Score=73.79 Aligned_cols=190 Identities=13% Similarity=0.138 Sum_probs=128.2
Q ss_pred CCCCCEEEEEeCCCcEEEEeCCCCeEEEEeccc------CCcceE-----EEE-EecCCCCcEEEEEECCCcEEEEECCC
Q 004477 59 NSKGSLLISGSDDTHINVWSYSSRKLLHSIETG------HSANVF-----CTK-FVPETSDELVVSGAGDAEVRLFNLSR 126 (751)
Q Consensus 59 s~dg~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~------h~~~V~-----~v~-fsp~s~~~~l~sgs~Dg~V~vwd~~~ 126 (751)
+.||+.++-. .-|.|.++|..+..... +..+ ...+.+ -+. |++-. |++++..|. |.+.|.+...
T Consensus 275 nsDGkrIvFq-~~GdIylydP~td~lek-ldI~lpl~rk~k~~k~~~pskyledfa~~~-Gd~ia~VSR-GkaFi~~~~~ 350 (668)
T COG4946 275 NSDGKRIVFQ-NAGDIYLYDPETDSLEK-LDIGLPLDRKKKQPKFVNPSKYLEDFAVVN-GDYIALVSR-GKAFIMRPWD 350 (668)
T ss_pred CCCCcEEEEe-cCCcEEEeCCCcCccee-eecCCccccccccccccCHHHhhhhhccCC-CcEEEEEec-CcEEEECCCC
Confidence 3467766533 44679999987654322 2111 111111 112 55554 789988876 6777776653
Q ss_pred CCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCC-cEEEEecCCCCCCCCCCCCCCccceEEEecccCce
Q 004477 127 FSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDG-TLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAK 205 (751)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg-~I~iwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~ 205 (751)
+ -..-.+|.+.|+-..+.. ++.-++.|..|| .+-++|.++++..
T Consensus 351 ~------------~~iqv~~~~~VrY~r~~~-~~e~~vigt~dgD~l~iyd~~~~e~k---------------------- 395 (668)
T COG4946 351 G------------YSIQVGKKGGVRYRRIQV-DPEGDVIGTNDGDKLGIYDKDGGEVK---------------------- 395 (668)
T ss_pred C------------eeEEcCCCCceEEEEEcc-CCcceEEeccCCceEEEEecCCceEE----------------------
Confidence 2 223346788888888876 556788999999 8999999987621
Q ss_pred ecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCccccCCCCCCCCccccccccccccCCccccceEEE
Q 004477 206 RSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHV 285 (751)
Q Consensus 206 ~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~vt~v 285 (751)
...+.-..|.++..+| ++++++++.....|.++|+.++..... .+.. ..-|+.+
T Consensus 396 ----r~e~~lg~I~av~vs~-dGK~~vvaNdr~el~vididngnv~~i--------------------dkS~-~~lItdf 449 (668)
T COG4946 396 ----RIEKDLGNIEAVKVSP-DGKKVVVANDRFELWVIDIDNGNVRLI--------------------DKSE-YGLITDF 449 (668)
T ss_pred ----EeeCCccceEEEEEcC-CCcEEEEEcCceEEEEEEecCCCeeEe--------------------cccc-cceeEEE
Confidence 1112345788999999 489999999999999999998763210 0111 1249999
Q ss_pred EEcCCCCEEEEEeCC----CcEEEEECCCCCc
Q 004477 286 TFSPNGEEVLLSYSG----EHVYLMDVNHAGG 313 (751)
Q Consensus 286 ~fspdg~~Ll~~s~d----~~I~lwdl~~~~~ 313 (751)
.|+|++++++-+-.+ ..|+|||+.+++.
T Consensus 450 ~~~~nsr~iAYafP~gy~tq~Iklydm~~~Ki 481 (668)
T COG4946 450 DWHPNSRWIAYAFPEGYYTQSIKLYDMDGGKI 481 (668)
T ss_pred EEcCCceeEEEecCcceeeeeEEEEecCCCeE
Confidence 999999999987665 4899999999653
No 296
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.11 E-value=1.4e-05 Score=85.85 Aligned_cols=115 Identities=22% Similarity=0.204 Sum_probs=98.8
Q ss_pred CcchhHHHHHHHHHhhhcCCChhHHHHHhHHHHhcccCCCCCchhhhhHhHHHHHhhcccccchhhhHHHhhHHHhcCCC
Q 004477 359 GLGKCRMLVEIARNSLEEGKHPYYGIEACNEVLEGHLSGIGPMLRHECLCIRAALLLKRKWKNDAQMAIRDCYNARRIDS 438 (751)
Q Consensus 359 ~~~~~~~l~~~~~~~~~~g~~~~~ai~~~~~~i~~~~~~~~~~~~~~~~~~ra~~~~~r~w~~d~y~al~d~~~a~~~~~ 438 (751)
.+.........++..+..|. |..||..|.++|..-+++ +.+|||||+++++-.- .-.|+.||+++++++|
T Consensus 354 ~pe~A~e~r~kGne~Fk~gd-y~~Av~~YteAIkr~P~D------a~lYsNRAac~~kL~~---~~~aL~Da~~~ieL~p 423 (539)
T KOG0548|consen 354 NPEKAEEEREKGNEAFKKGD-YPEAVKHYTEAIKRDPED------ARLYSNRAACYLKLGE---YPEALKDAKKCIELDP 423 (539)
T ss_pred ChhHHHHHHHHHHHHHhccC-HHHHHHHHHHHHhcCCch------hHHHHHHHHHHHHHhh---HHHHHHHHHHHHhcCc
Confidence 44556667777888888888 999999999999977665 6699999999998764 5568999999999999
Q ss_pred CCcchHHHHHHHHHHhcchHHHHHHHHHhcccCCCChhhhHHHHH
Q 004477 439 SSFRAHLYMSEALEQLCKYKEALDFAIAAQCLDPSNSVMAEKVEN 483 (751)
Q Consensus 439 ~~~~a~~~~~~~l~~l~~~~~a~~~~~~~~~~~p~~~~~~~~~~~ 483 (751)
+.+|+++|.+.||..+.++..|+++........|....+..++..
T Consensus 424 ~~~kgy~RKg~al~~mk~ydkAleay~eale~dp~~~e~~~~~~r 468 (539)
T KOG0548|consen 424 NFIKAYLRKGAALRAMKEYDKALEAYQEALELDPSNAEAIDGYRR 468 (539)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHH
Confidence 999999999999999999999999999999988987776655543
No 297
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=98.07 E-value=1.4e-05 Score=80.61 Aligned_cols=163 Identities=14% Similarity=0.191 Sum_probs=111.9
Q ss_pred EECC--CCCEEEEEeCCCcEEEEeCCCCeEEEEecccCCcceEEEEEecCCCCcEEEEEECCCcEEEEECCCCCCCCCCC
Q 004477 57 SWNS--KGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDD 134 (751)
Q Consensus 57 ~~s~--dg~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~Dg~V~vwd~~~~~~~~~~~ 134 (751)
+|+- .|-. ++.+.+..|-|-|+++|-. ..| ..++.|+++.|.-. ++++..|...|.|.+.|++....
T Consensus 218 awSlni~gyh-fs~G~sqqv~L~nvetg~~-qsf--~sksDVfAlQf~~s--~nLv~~GcRngeI~~iDLR~rnq----- 286 (425)
T KOG2695|consen 218 AWSLNIMGYH-FSVGLSQQVLLTNVETGHQ-QSF--QSKSDVFALQFAGS--DNLVFNGCRNGEIFVIDLRCRNQ----- 286 (425)
T ss_pred hhhhccceee-ecccccceeEEEEeecccc-ccc--ccchhHHHHHhccc--CCeeEecccCCcEEEEEeeeccc-----
Confidence 5543 2434 5666777888889887643 333 25678999999987 78999999999999999986421
Q ss_pred CCCCCceeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCCCCCCCCCCccceEEEecccCceecccCCCCC
Q 004477 135 NAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQ 214 (751)
Q Consensus 135 ~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 214 (751)
.+..+.+.+. |...|+++..-..+...|++.+.+|+|++||+|.-+.... +....+|
T Consensus 287 G~~~~a~rly-h~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~----------------------V~qYeGH 343 (425)
T KOG2695|consen 287 GNGWCAQRLY-HDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRATKCKKS----------------------VMQYEGH 343 (425)
T ss_pred CCCcceEEEE-cCcchhhhhhhccccceEeeccCcCceeEeeehhhhcccc----------------------eeeeecc
Confidence 1124455554 8999999987765667888999999999999997653210 1111111
Q ss_pred cc--ceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCcccc
Q 004477 215 TL--SLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSC 254 (751)
Q Consensus 215 ~~--~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~~~~ 254 (751)
.. .-.-+-+.+. ...+++++.|...|||.++.+..+.++
T Consensus 344 vN~~a~l~~~v~~e-eg~I~s~GdDcytRiWsl~~ghLl~ti 384 (425)
T KOG2695|consen 344 VNLSAYLPAHVKEE-EGSIFSVGDDCYTRIWSLDSGHLLCTI 384 (425)
T ss_pred cccccccccccccc-cceEEEccCeeEEEEEecccCceeecc
Confidence 11 1111234453 467888999999999999988766544
No 298
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=98.06 E-value=0.0015 Score=66.88 Aligned_cols=220 Identities=12% Similarity=0.071 Sum_probs=131.2
Q ss_pred EEEECC-CCCEEEEEeCCCcEEEEeCCCCeEEEEecccCCcceEEEEEe-cCCCCcEEEEEECCCcEEEEECCCCCCCCC
Q 004477 55 AISWNS-KGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFV-PETSDELVVSGAGDAEVRLFNLSRFSGRGL 132 (751)
Q Consensus 55 ~l~~s~-dg~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~V~~v~fs-p~s~~~~l~sgs~Dg~V~vwd~~~~~~~~~ 132 (751)
++.|.+ +|.++.+--..+.|..|+..++.....- ... ...+++. ++ +.+ +.+... .+.++|+.++.-
T Consensus 4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~~~-~~~---~~G~~~~~~~--g~l-~v~~~~-~~~~~d~~~g~~--- 72 (246)
T PF08450_consen 4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEVID-LPG---PNGMAFDRPD--GRL-YVADSG-GIAVVDPDTGKV--- 72 (246)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEE-SSS---EEEEEEECTT--SEE-EEEETT-CEEEEETTTTEE---
T ss_pred ceEEECCCCEEEEEEcCCCEEEEEECCCCeEEEEe-cCC---CceEEEEccC--CEE-EEEEcC-ceEEEecCCCcE---
Confidence 578988 7888888888999999999887664322 111 7777787 55 444 444554 455558876421
Q ss_pred CCCCCCCceeec--c-cCCceeEEEEecCCCCEEEEEeCC--------CcEEEEecCCCCCCCCCCCCCCccceEEEecc
Q 004477 133 DDNAITPSALYQ--C-HTRRVKKLAVEVGNPHVVWSASED--------GTLRQHDFRQGSSCPPAGSSHQECRNILLDLR 201 (751)
Q Consensus 133 ~~~~~~~~~~~~--~-h~~~V~~l~~sp~~~~~l~s~s~D--------g~I~iwDlr~~~~~~~~~~~~~~~~~~l~~~~ 201 (751)
+.+.... . .....+.+++.| ++++.++.... |.|..++.. ++. ..+..
T Consensus 73 -----~~~~~~~~~~~~~~~~ND~~vd~-~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~------------~~~~~-- 131 (246)
T PF08450_consen 73 -----TVLADLPDGGVPFNRPNDVAVDP-DGNLYVTDSGGGGASGIDPGSVYRIDPD-GKV------------TVVAD-- 131 (246)
T ss_dssp -----EEEEEEETTCSCTEEEEEEEE-T-TS-EEEEEECCBCTTCGGSEEEEEEETT-SEE------------EEEEE--
T ss_pred -----EEEeeccCCCcccCCCceEEEcC-CCCEEEEecCCCccccccccceEEECCC-CeE------------EEEec--
Confidence 2222221 1 345678999999 56776665543 445556554 220 11111
Q ss_pred cCceecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCC-ccccCCCCCCCCccccccccccccCCcccc
Q 004477 202 CGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPP-LTSCQKRMSPPPCVNYFCPMHLSEHGRSSL 280 (751)
Q Consensus 202 ~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 280 (751)
.....+.|+|+|++..++++-+..+.|..|++..... +.. .+.+ ..... . ..
T Consensus 132 ------------~~~~pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~~~~~~~~----------~~~~--~~~~~--~-~g 184 (246)
T PF08450_consen 132 ------------GLGFPNGIAFSPDGKTLYVADSFNGRIWRFDLDADGGELSN----------RRVF--IDFPG--G-PG 184 (246)
T ss_dssp ------------EESSEEEEEEETTSSEEEEEETTTTEEEEEEEETTTCCEEE----------EEEE--EE-SS--S-SC
T ss_pred ------------CcccccceEECCcchheeecccccceeEEEeccccccceee----------eeeE--EEcCC--C-Cc
Confidence 1234678999996444556777888999999864321 110 0111 00000 0 11
Q ss_pred ceEEEEEcCCCCEEEEEeCCCcEEEEECCCCCcceeeeecCCCceeEEeC-CCCC
Q 004477 281 HLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVGDASKIMSFT-PTLN 334 (751)
Q Consensus 281 ~vt~v~fspdg~~Ll~~s~d~~I~lwdl~~~~~~~~~~~~~~~~~~~~~s-p~~~ 334 (751)
..-.++++.+|+..++....+.|.++|.+ ++...........+..++|. |+.+
T Consensus 185 ~pDG~~vD~~G~l~va~~~~~~I~~~~p~-G~~~~~i~~p~~~~t~~~fgg~~~~ 238 (246)
T PF08450_consen 185 YPDGLAVDSDGNLWVADWGGGRIVVFDPD-GKLLREIELPVPRPTNCAFGGPDGK 238 (246)
T ss_dssp EEEEEEEBTTS-EEEEEETTTEEEEEETT-SCEEEEEE-SSSSEEEEEEESTTSS
T ss_pred CCCcceEcCCCCEEEEEcCCCEEEEECCC-ccEEEEEcCCCCCEEEEEEECCCCC
Confidence 36789999999988888889999999988 45443333334567777873 4443
No 299
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.05 E-value=0.00025 Score=79.34 Aligned_cols=166 Identities=14% Similarity=0.164 Sum_probs=111.6
Q ss_pred EeccCCCcEEEEEECCC-------------CCEEEEEeCCCcEEEEeCCCCeEEEEecccCCcceEEEEEecC---CCCc
Q 004477 45 ELEGHQGCVNAISWNSK-------------GSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPE---TSDE 108 (751)
Q Consensus 45 ~L~gH~~~V~~l~~s~d-------------g~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~---s~~~ 108 (751)
-|..|.|.|.-..+.-+ |.++||||.||+|.|-.+.+.+...++ ....++.+|+++|+ ...+
T Consensus 53 ~~GtH~g~v~~~~~~~~~~~~~~~s~~~~~Gey~asCS~DGkv~I~sl~~~~~~~~~--df~rpiksial~Pd~~~~~sk 130 (846)
T KOG2066|consen 53 ALGTHRGAVYLTTCQGNPKTNFDHSSSILEGEYVASCSDDGKVVIGSLFTDDEITQY--DFKRPIKSIALHPDFSRQQSK 130 (846)
T ss_pred eeccccceEEEEecCCcccccccccccccCCceEEEecCCCcEEEeeccCCccceeE--ecCCcceeEEeccchhhhhhh
Confidence 45667777776665544 999999999999999999888877766 35678999999998 1246
Q ss_pred EEEEEECCCcEEEEECCCCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCCCCCCC
Q 004477 109 LVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGS 188 (751)
Q Consensus 109 ~l~sgs~Dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~~~~ 188 (751)
.+++|+.-| +.++.-.-... +....+..-.++|.++.|. +++++-++.+| |++||+.+.+.+.....
T Consensus 131 ~fv~GG~ag-lvL~er~wlgn--------k~~v~l~~~eG~I~~i~W~---g~lIAWand~G-v~vyd~~~~~~l~~i~~ 197 (846)
T KOG2066|consen 131 QFVSGGMAG-LVLSERNWLGN--------KDSVVLSEGEGPIHSIKWR---GNLIAWANDDG-VKVYDTPTRQRLTNIPP 197 (846)
T ss_pred heeecCcce-EEEehhhhhcC--------ccceeeecCccceEEEEec---CcEEEEecCCC-cEEEeccccceeeccCC
Confidence 789999888 77765442211 1122455668899999994 57888887776 78999988764321111
Q ss_pred CCCccceEEEecccCceecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCC
Q 004477 189 SHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRM 247 (751)
Q Consensus 189 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~ 247 (751)
.+ ..+........+.|.+. ..|+.|=. .+|+|..++.
T Consensus 198 p~-------------------~~~R~e~fpphl~W~~~--~~LVIGW~-d~v~i~~I~~ 234 (846)
T KOG2066|consen 198 PS-------------------QSVRPELFPPHLHWQDE--DRLVIGWG-DSVKICSIKK 234 (846)
T ss_pred CC-------------------CCCCcccCCCceEecCC--CeEEEecC-CeEEEEEEec
Confidence 10 00111222335667763 56666544 4788888873
No 300
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=98.02 E-value=0.00022 Score=79.18 Aligned_cols=233 Identities=14% Similarity=0.105 Sum_probs=148.9
Q ss_pred hccccccEEeccCCCcEEEEEECCC------C------CEEEEEeCCCcEEEEeCCCCeEEEEecccCCcceEEEEEecC
Q 004477 37 VRRLSQERELEGHQGCVNAISWNSK------G------SLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPE 104 (751)
Q Consensus 37 i~~~~~~~~L~gH~~~V~~l~~s~d------g------~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~ 104 (751)
..+++.++.++-|+..|+.+.|.|- + -+||++.-.|.|.|||...+..+..+ ..|...|..+.|.|.
T Consensus 42 s~s~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d~~~~s~~~~l-~~~~~~~qdl~W~~~ 120 (1062)
T KOG1912|consen 42 SRSLQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVDFVLASVINWL-SHSNDSVQDLCWVPA 120 (1062)
T ss_pred hhhhhhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEEEEehhhhhhhhh-cCCCcchhheeeeec
Confidence 3456788889999999999999872 1 26888888999999999988888878 788999999999987
Q ss_pred CCC--cEEEEEECCCcEEEEECCCCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCC
Q 004477 105 TSD--ELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSS 182 (751)
Q Consensus 105 s~~--~~l~sgs~Dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~ 182 (751)
.+. .+|+.-..-.+|.+|+..++ +....+..-.....|+.+.|.+.+.|..-+..|.+.+-+.-..+.
T Consensus 121 rd~Srd~LlaIh~ss~lvLwntdtG----------~k~Wk~~ys~~iLs~f~~DPfd~rh~~~l~s~g~vl~~~~l~~se 190 (1062)
T KOG1912|consen 121 RDDSRDVLLAIHGSSTLVLWNTDTG----------EKFWKYDYSHEILSCFRVDPFDSRHFCVLGSKGFVLSCKDLGLSE 190 (1062)
T ss_pred cCcchheeEEecCCcEEEEEEccCC----------ceeeccccCCcceeeeeeCCCCcceEEEEccCceEEEEeccCCCC
Confidence 533 35666667789999999976 334444444556677899998888777777778887776654332
Q ss_pred CCCCCCCCCccceEEEecccC--c----------eecccCCCCCcc---ceEEEEEeCCCCcEEEEEeCCCeEEEEeCCC
Q 004477 183 CPPAGSSHQECRNILLDLRCG--A----------KRSLADPPKQTL---SLKSCDISSTRPHLLLVGGSDAFARLYDRRM 247 (751)
Q Consensus 183 ~~~~~~~~~~~~~~l~~~~~~--~----------~~~~~~~~~~~~---~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~ 247 (751)
... ....+...+. . .......+.... ..-.++|+|.- +.++-...-..+.|+|+.-
T Consensus 191 p~~--------pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~p~~-rn~lfi~~prellv~dle~ 261 (1062)
T KOG1912|consen 191 PDV--------PGKEFQITSDHSDLAHLERETATGNSTTSTPASAYFITYCAQFAFSPHW-RNILFITFPRELLVFDLEY 261 (1062)
T ss_pred CCC--------CceeEEEecCccchhhhhhhhhccccccCCCcchhHHHHHHhhhcChhh-hceEEEEeccceEEEcchh
Confidence 100 0000000000 0 000000111111 12235678853 3333344567788999876
Q ss_pred CCCccccCCCCCCCCccccccccccccCCccccceEEEEEcCCCC--EEEEEeCCCcEEEEECCC
Q 004477 248 LPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGE--EVLLSYSGEHVYLMDVNH 310 (751)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~vt~v~fspdg~--~Ll~~s~d~~I~lwdl~~ 310 (751)
...+..... +++ .+.-+.+-|+++ .|++...||.+.+|--+.
T Consensus 262 ~~~l~vvpi-----------------er~----~akfv~vlP~~~rd~LfclH~nG~ltirvrk~ 305 (1062)
T KOG1912|consen 262 ECCLAVVPI-----------------ERG----GAKFVDVLPDPRRDALFCLHSNGRLTIRVRKE 305 (1062)
T ss_pred hceeEEEEe-----------------ccC----CcceeEeccCCCcceEEEEecCCeEEEEEeec
Confidence 543332210 011 244567777664 588888999999997554
No 301
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.02 E-value=6.5e-05 Score=78.46 Aligned_cols=221 Identities=12% Similarity=0.070 Sum_probs=141.4
Q ss_pred CCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCC--Ce-EEEEecccCCcceEEEEEecCCCCcEEEEEEC-CCcEEEEEC
Q 004477 49 HQGCVNAISWNSKGSLLISGSDDTHINVWSYSS--RK-LLHSIETGHSANVFCTKFVPETSDELVVSGAG-DAEVRLFNL 124 (751)
Q Consensus 49 H~~~V~~l~~s~dg~~LaSgs~Dg~I~IWd~~~--~~-~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~-Dg~V~vwd~ 124 (751)
|.+.|+.+.-+ -.+++.+++.||.++.|.... +. .+..+ ..|.+.|.+++.+-+ +-++.|.+. |..++++|+
T Consensus 8 hrd~i~hv~~t-ka~fiiqASlDGh~KFWkKs~isGvEfVKhF-raHL~~I~sl~~S~d--g~L~~Sv~d~Dhs~KvfDv 83 (558)
T KOG0882|consen 8 HRDVITHVFPT-KAKFIIQASLDGHKKFWKKSRISGVEFVKHF-RAHLGVILSLAVSYD--GWLFRSVEDPDHSVKVFDV 83 (558)
T ss_pred ccceeeeEeee-hhheEEeeecchhhhhcCCCCccceeehhhh-HHHHHHHHhhhcccc--ceeEeeccCcccceeEEEe
Confidence 67777766443 567999999999999998653 32 23333 689999999999988 788999787 999999999
Q ss_pred CCCCCCCCCCCCCCCceeecccCCceeEEEEecCCC----CEEEEEeCCCcEEEEecCCCCCCCCCCCCCCccceEEEec
Q 004477 125 SRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNP----HVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDL 200 (751)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~----~~l~s~s~Dg~I~iwDlr~~~~~~~~~~~~~~~~~~l~~~ 200 (751)
....- +..++ -......+.|....+ .+-++.-.+|.|.++|-+...+.
T Consensus 84 En~Dm----------inmiK-L~~lPg~a~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q----------------- 135 (558)
T KOG0882|consen 84 ENFDM----------INMIK-LVDLPGFAEWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQ----------------- 135 (558)
T ss_pred eccch----------hhhcc-cccCCCceEEecCCCCeeeeEEeecccCCCcEEECCcCCcCc-----------------
Confidence 86421 11111 011112233332122 23334456789999997664321
Q ss_pred ccCceecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCccccCCCCCCCCccccccccccccCCcccc
Q 004477 201 RCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSL 280 (751)
Q Consensus 201 ~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 280 (751)
.......|..+|.++.++|. +..+++....|.|.-|.... +................ .+.+......
T Consensus 136 ------~~~fkklH~sPV~~i~y~qa-~Ds~vSiD~~gmVEyWs~e~--~~qfPr~~l~~~~K~eT----dLy~f~K~Kt 202 (558)
T KOG0882|consen 136 ------DGYFKKLHFSPVKKIRYNQA-GDSAVSIDISGMVEYWSAEG--PFQFPRTNLNFELKHET----DLYGFPKAKT 202 (558)
T ss_pred ------cceecccccCceEEEEeecc-ccceeeccccceeEeecCCC--cccCccccccccccccc----hhhccccccc
Confidence 11222337789999999995 78899999999999998762 11100000000000000 0111111122
Q ss_pred ceEEEEEcCCCCEEEEEeCCCcEEEEECCCCCcc
Q 004477 281 HLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGR 314 (751)
Q Consensus 281 ~vt~v~fspdg~~Ll~~s~d~~I~lwdl~~~~~~ 314 (751)
..+++.|+|+|..+.+-+.|..|++|++.+++..
T Consensus 203 ~pts~Efsp~g~qistl~~DrkVR~F~~KtGklv 236 (558)
T KOG0882|consen 203 EPTSFEFSPDGAQISTLNPDRKVRGFVFKTGKLV 236 (558)
T ss_pred CccceEEccccCcccccCcccEEEEEEeccchhh
Confidence 4789999999999999999999999999997543
No 302
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=98.01 E-value=0.00037 Score=83.92 Aligned_cols=219 Identities=17% Similarity=0.176 Sum_probs=133.7
Q ss_pred CCCcEEEEEECCCCCEEEEEeC---C---CcEEEEeCCCCeEEEEecccCCcceEEEEEecCCCCcEEEEEEC---CCcE
Q 004477 49 HQGCVNAISWNSKGSLLISGSD---D---THINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAG---DAEV 119 (751)
Q Consensus 49 H~~~V~~l~~s~dg~~LaSgs~---D---g~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~---Dg~V 119 (751)
+.+.-..|+|-.||+++|+.+- . ..|+||+-+ |.+..+- ..-.+--.+++|-|. |++||+.-. ...|
T Consensus 208 ~dd~~~~ISWRGDG~yFAVss~~~~~~~~R~iRVy~Re-G~L~stS-E~v~gLe~~l~WrPs--G~lIA~~q~~~~~~~V 283 (928)
T PF04762_consen 208 WDDGRVRISWRGDGEYFAVSSVEPETGSRRVIRVYSRE-GELQSTS-EPVDGLEGALSWRPS--GNLIASSQRLPDRHDV 283 (928)
T ss_pred cCCCceEEEECCCCcEEEEEEEEcCCCceeEEEEECCC-ceEEecc-ccCCCccCCccCCCC--CCEEEEEEEcCCCcEE
Confidence 5556668999999999998874 3 579999965 6544433 333444557899999 899998764 3456
Q ss_pred EEEECCCCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCCCCCCCCCCccceEEEe
Q 004477 120 RLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLD 199 (751)
Q Consensus 120 ~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~~~~~~~~~~~~l~~ 199 (751)
.+|.-+.... . +-...+......|..++|++ ++.+|+..-.|. |.+|-....+ |.
T Consensus 284 vFfErNGLrh-----g--eF~l~~~~~~~~v~~l~Wn~-ds~iLAv~~~~~-vqLWt~~NYH----------------WY 338 (928)
T PF04762_consen 284 VFFERNGLRH-----G--EFTLRFDPEEEKVIELAWNS-DSEILAVWLEDR-VQLWTRSNYH----------------WY 338 (928)
T ss_pred EEEecCCcEe-----e--eEecCCCCCCceeeEEEECC-CCCEEEEEecCC-ceEEEeeCCE----------------EE
Confidence 6665442110 0 10111224567899999999 678888877655 9999876543 21
Q ss_pred cccCceecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCC----CCC------------------ccccCC-
Q 004477 200 LRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRM----LPP------------------LTSCQK- 256 (751)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~----~~~------------------~~~~~~- 256 (751)
++.. +... ....+..+.|+|.++..|.+...++.+..++... ... ++.+..
T Consensus 339 LKqe----i~~~--~~~~~~~~~Wdpe~p~~L~v~t~~g~~~~~~~~~~v~~s~~~~~~D~g~vaVIDG~~lllTpf~~a 412 (928)
T PF04762_consen 339 LKQE----IRFS--SSESVNFVKWDPEKPLRLHVLTSNGQYEIYDFAWDVSRSPGSSPNDNGTVAVIDGNKLLLTPFRRA 412 (928)
T ss_pred EEEE----EEcc--CCCCCCceEECCCCCCEEEEEecCCcEEEEEEEEEEEecCCCCccCceEEEEEeCCeEEEeccccc
Confidence 1110 1111 1122334778887777777777766665544321 110 011111
Q ss_pred CCCCCCccccccccccccCCccccceEEEEEcCCCCEEEEEeCCCcEEEEECCCC
Q 004477 257 RMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHA 311 (751)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~g~~~~~vt~v~fspdg~~Ll~~s~d~~I~lwdl~~~ 311 (751)
..+||.|...+. -...|..++|++++..+++-..||.|.+|.....
T Consensus 413 ~VPPPMs~~~l~---------~~~~v~~vaf~~~~~~~avl~~d~~l~~~~~~~~ 458 (928)
T PF04762_consen 413 VVPPPMSSYELE---------LPSPVNDVAFSPSNSRFAVLTSDGSLSIYEWDLK 458 (928)
T ss_pred CCCchHhceEEc---------CCCCcEEEEEeCCCCeEEEEECCCCEEEEEecCC
Confidence 123333332221 1225999999999998999999999999986653
No 303
>PRK04043 tolB translocation protein TolB; Provisional
Probab=97.96 E-value=0.001 Score=73.51 Aligned_cols=201 Identities=10% Similarity=0.083 Sum_probs=112.6
Q ss_pred cEEEEeCCCCeEEEEecccCCcceEEEEEecCCCCc-EEEEEEC---CCcEEEEECCCCCCCCCCCCCCCCceeecccCC
Q 004477 73 HINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDE-LVVSGAG---DAEVRLFNLSRFSGRGLDDNAITPSALYQCHTR 148 (751)
Q Consensus 73 ~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~s~~~-~l~sgs~---Dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~ 148 (751)
.|.+=|.. |.....+..+ . .+..-.|+|+ |+ .++..+. +..|.++|+.++. ...+....+
T Consensus 170 ~l~~~d~d-g~~~~~~~~~-~-~~~~p~wSpD--G~~~i~y~s~~~~~~~Iyv~dl~tg~-----------~~~lt~~~g 233 (419)
T PRK04043 170 NIVLADYT-LTYQKVIVKG-G-LNIFPKWANK--EQTAFYYTSYGERKPTLYKYNLYTGK-----------KEKIASSQG 233 (419)
T ss_pred eEEEECCC-CCceeEEccC-C-CeEeEEECCC--CCcEEEEEEccCCCCEEEEEECCCCc-----------EEEEecCCC
Confidence 45554554 3333334233 3 7788999999 66 3554333 3568888887642 222223455
Q ss_pred ceeEEEEecCCCCEEEEEeCCC--cEEEEecCCCCCCCCCCCCCCccceEEEecccCceecccCCCCCccceEEEEEeCC
Q 004477 149 RVKKLAVEVGNPHVVWSASEDG--TLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISST 226 (751)
Q Consensus 149 ~V~~l~~sp~~~~~l~s~s~Dg--~I~iwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~ 226 (751)
.+....|+|++..++++.+.++ .|.++|+.++... .+...+. ......|+|+
T Consensus 234 ~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g~~~-----------------------~LT~~~~---~d~~p~~SPD 287 (419)
T PRK04043 234 MLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNTKTLT-----------------------QITNYPG---IDVNGNFVED 287 (419)
T ss_pred cEEeeEECCCCCEEEEEEccCCCcEEEEEECCCCcEE-----------------------EcccCCC---ccCccEECCC
Confidence 5667789996656666665554 5666676655311 1111111 1223479996
Q ss_pred CCcEEEEEeCCC--eEEEEeCCCCCCccccCCCCCCCCccccccccccccCCccccceEEEEEcCCCCEEEEEeCC----
Q 004477 227 RPHLLLVGGSDA--FARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSG---- 300 (751)
Q Consensus 227 ~~~~l~sgs~D~--~IriwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~vt~v~fspdg~~Ll~~s~d---- 300 (751)
+..++++....+ .|.++|+..++... . ...+. ....|||||++|+..+..
T Consensus 288 G~~I~F~Sdr~g~~~Iy~~dl~~g~~~r--------------l-----t~~g~-----~~~~~SPDG~~Ia~~~~~~~~~ 343 (419)
T PRK04043 288 DKRIVFVSDRLGYPNIFMKKLNSGSVEQ--------------V-----VFHGK-----NNSSVSTYKNYIVYSSRETNNE 343 (419)
T ss_pred CCEEEEEECCCCCceEEEEECCCCCeEe--------------C-----ccCCC-----cCceECCCCCEEEEEEcCCCcc
Confidence 434444443333 56777776543211 0 00111 124899999998877653
Q ss_pred -----CcEEEEECCCCCcceeeeecCCCceeEEeCCCCCCcccCCC
Q 004477 301 -----EHVYLMDVNHAGGRAMRYTVGDASKIMSFTPTLNGLELQPP 341 (751)
Q Consensus 301 -----~~I~lwdl~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~~ 341 (751)
..|++.|+.++....+. . ........|+|+...+.+...
T Consensus 344 ~~~~~~~I~v~d~~~g~~~~LT-~-~~~~~~p~~SPDG~~I~f~~~ 387 (419)
T PRK04043 344 FGKNTFNLYLISTNSDYIRRLT-A-NGVNQFPRFSSDGGSIMFIKY 387 (419)
T ss_pred cCCCCcEEEEEECCCCCeEECC-C-CCCcCCeEECCCCCEEEEEEc
Confidence 37899999886533222 2 234446889999888877643
No 304
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=97.95 E-value=0.00056 Score=73.43 Aligned_cols=73 Identities=12% Similarity=0.236 Sum_probs=53.9
Q ss_pred CcEEEEEECCCCCEEEEEeC-----------CCcEEEEeCCCCeEEEEecc--cCCcceEEEEEecCCCCcEEEEEECCC
Q 004477 51 GCVNAISWNSKGSLLISGSD-----------DTHINVWSYSSRKLLHSIET--GHSANVFCTKFVPETSDELVVSGAGDA 117 (751)
Q Consensus 51 ~~V~~l~~s~dg~~LaSgs~-----------Dg~I~IWd~~~~~~~~~l~~--~h~~~V~~v~fsp~s~~~~l~sgs~Dg 117 (751)
..|.-+.|||..+||+|=|. -..++|||+.+|.....+.. +....-.-.+||.+ ++++|--.. .
T Consensus 250 p~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~tG~lkrsF~~~~~~~~~WP~frWS~D--dKy~Arm~~-~ 326 (698)
T KOG2314|consen 250 PGVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDIATGLLKRSFPVIKSPYLKWPIFRWSHD--DKYFARMTG-N 326 (698)
T ss_pred CCceeeecCCccceEEEecCCccccCcccCCCceEEEEEccccchhcceeccCCCccccceEEeccC--CceeEEecc-c
Confidence 35788999999999999763 25799999999998888733 22222334689988 788886554 6
Q ss_pred cEEEEECCC
Q 004477 118 EVRLFNLSR 126 (751)
Q Consensus 118 ~V~vwd~~~ 126 (751)
+|.||+...
T Consensus 327 sisIyEtps 335 (698)
T KOG2314|consen 327 SISIYETPS 335 (698)
T ss_pred eEEEEecCc
Confidence 788888764
No 305
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=97.89 E-value=0.0015 Score=69.74 Aligned_cols=249 Identities=13% Similarity=0.143 Sum_probs=146.6
Q ss_pred CcEEEEEECCCCCEEEEEeCCC---------------cEEEEeCCCCeEEEEecccCCcc--eE-EEEEecCCCCcEEEE
Q 004477 51 GCVNAISWNSKGSLLISGSDDT---------------HINVWSYSSRKLLHSIETGHSAN--VF-CTKFVPETSDELVVS 112 (751)
Q Consensus 51 ~~V~~l~~s~dg~~LaSgs~Dg---------------~I~IWd~~~~~~~~~l~~~h~~~--V~-~v~fsp~s~~~~l~s 112 (751)
..|..+.|+|.+++|.|=+... .+.|||+.+|..+..+ .+-... .+ -++|+-+ +.++|=
T Consensus 72 ~~V~~~~fSP~~kYL~tw~~~pi~~pe~e~sp~~~~n~~~vwd~~sg~iv~sf-~~~~q~~~~Wp~~k~s~~--D~y~AR 148 (561)
T COG5354 72 PDVKYLDFSPNEKYLVTWSREPIIEPEIEISPFTSKNNVFVWDIASGMIVFSF-NGISQPYLGWPVLKFSID--DKYVAR 148 (561)
T ss_pred CCceecccCcccceeeeeccCCccChhhccCCccccCceeEEeccCceeEeec-cccCCcccccceeeeeec--chhhhh
Confidence 5688999999999999976533 4999999999999888 444444 55 7889887 666654
Q ss_pred EECCCcEEEEECCCCCCCCCCCCCCCCceeecccCCceeEEEEecC-CCCEEE-----EEeCCCcEEEEecCCCCCCCCC
Q 004477 113 GAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVG-NPHVVW-----SASEDGTLRQHDFRQGSSCPPA 186 (751)
Q Consensus 113 gs~Dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~-~~~~l~-----s~s~Dg~I~iwDlr~~~~~~~~ 186 (751)
- ....++|+++... -. ..+.+.++ ...|...+|+|. +...|+ ..+.++++++|.+-.+..+...
T Consensus 149 v-v~~sl~i~e~t~n-~~------~~p~~~lr--~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk 218 (561)
T COG5354 149 V-VGSSLYIHEITDN-IE------EHPFKNLR--PVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTK 218 (561)
T ss_pred h-ccCeEEEEecCCc-cc------cCchhhcc--ccceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeee
Confidence 3 3467999997321 11 02233332 355777888885 223333 2466788999988755433110
Q ss_pred C-------------CCCCccceEEEecccCc--------------eecccCCCCCccceEEEEEeCCCCcEEEE--EeCC
Q 004477 187 G-------------SSHQECRNILLDLRCGA--------------KRSLADPPKQTLSLKSCDISSTRPHLLLV--GGSD 237 (751)
Q Consensus 187 ~-------------~~~~~~~~~l~~~~~~~--------------~~~~~~~~~~~~~v~~i~~sp~~~~~l~s--gs~D 237 (751)
. .+..-|..+......+. ...+........+|...+|+|. ++.+++ |-.+
T Consensus 219 ~lfk~~~~qLkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e~~i~V~~~~~~pVhdf~W~p~-S~~F~vi~g~~p 297 (561)
T COG5354 219 NLFKVSGVQLKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRITERSIPVEKDLKDPVHDFTWEPL-SSRFAVISGYMP 297 (561)
T ss_pred eeEeecccEEEEecCCceEEEEEEEeeecccceeccceEEEEeecccccceeccccccceeeeeccc-CCceeEEecccc
Confidence 0 00000111111110100 0011111134678999999996 444443 4578
Q ss_pred CeEEEEeCCCCCCccccCCCCCCCCccccccccccccCCccccceEEEEEcCCCCEEEEEeCC---CcEEEEECCCCCcc
Q 004477 238 AFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSG---EHVYLMDVNHAGGR 314 (751)
Q Consensus 238 ~~IriwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~vt~v~fspdg~~Ll~~s~d---~~I~lwdl~~~~~~ 314 (751)
..+.++|++.. +..+.|. + .=+.+.|||.++++++++-| |.|-+||..+...
T Consensus 298 a~~s~~~lr~N---------------l~~~~Pe-----~----~rNT~~fsp~~r~il~agF~nl~gni~i~~~~~rf~- 352 (561)
T COG5354 298 ASVSVFDLRGN---------------LRFYFPE-----Q----KRNTIFFSPHERYILFAGFDNLQGNIEIFDPAGRFK- 352 (561)
T ss_pred cceeecccccc---------------eEEecCC-----c----ccccccccCcccEEEEecCCccccceEEeccCCceE-
Confidence 89999999853 1111111 1 13457799999999987764 7899999887422
Q ss_pred eeeeecCCCceeEEeCCCCCCccc
Q 004477 315 AMRYTVGDASKIMSFTPTLNGLEL 338 (751)
Q Consensus 315 ~~~~~~~~~~~~~~~sp~~~~~~~ 338 (751)
.+....+-......|+|++.-...
T Consensus 353 ~~~~~~~~n~s~~~wspd~qF~~~ 376 (561)
T COG5354 353 VAGAFNGLNTSYCDWSPDGQFYDT 376 (561)
T ss_pred EEEEeecCCceEeeccCCceEEEe
Confidence 221222333344558887654433
No 306
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.88 E-value=0.00049 Score=71.22 Aligned_cols=88 Identities=11% Similarity=0.235 Sum_probs=76.3
Q ss_pred cccccEEeccCCCcEEEEEECCCCC-EEEEEeCCCcEEEEeCCCCeEEEEecccCCcceEEEEEecCCCCcEEEEEECCC
Q 004477 39 RLSQERELEGHQGCVNAISWNSKGS-LLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDA 117 (751)
Q Consensus 39 ~~~~~~~L~gH~~~V~~l~~s~dg~-~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~Dg 117 (751)
.++....|.+|...|..|+|||..+ +|..++.+.+|+|.|+++..++..+ ..| ..+++++|.-+. ..+|+.|-..|
T Consensus 182 ~fkssq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy-~a~-~~~wSC~wDlde-~h~IYaGl~nG 258 (463)
T KOG1645|consen 182 DFKSSQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSY-IAY-NQIWSCCWDLDE-RHVIYAGLQNG 258 (463)
T ss_pred CcchhhcccccchhhhhhccCccccceeeeeccCceEEEEecccceeeehe-ecc-CCceeeeeccCC-cceeEEeccCc
Confidence 3444557888999999999999877 8999999999999999999888887 566 889999999986 68899999999
Q ss_pred cEEEEECCCCCC
Q 004477 118 EVRLFNLSRFSG 129 (751)
Q Consensus 118 ~V~vwd~~~~~~ 129 (751)
.|.|||++...+
T Consensus 259 ~VlvyD~R~~~~ 270 (463)
T KOG1645|consen 259 MVLVYDMRQPEG 270 (463)
T ss_pred eEEEEEccCCCc
Confidence 999999997543
No 307
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.86 E-value=0.0005 Score=77.05 Aligned_cols=192 Identities=14% Similarity=0.184 Sum_probs=124.7
Q ss_pred CCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEecccCCcceEEEEEecCCCCcEEEEEECCCcEEEEECCCCCC
Q 004477 50 QGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSG 129 (751)
Q Consensus 50 ~~~V~~l~~s~dg~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~Dg~V~vwd~~~~~~ 129 (751)
.+.+.|++++ ++.|+-|.-+|.|++.+.... . .+. ..|... +..|.+++|||.||+|.|-.+-+..
T Consensus 39 ~D~is~~av~--~~~~~~GtH~g~v~~~~~~~~-~-~~~-~~~s~~--------~~~Gey~asCS~DGkv~I~sl~~~~- 104 (846)
T KOG2066|consen 39 NDAISCCAVH--DKFFALGTHRGAVYLTTCQGN-P-KTN-FDHSSS--------ILEGEYVASCSDDGKVVIGSLFTDD- 104 (846)
T ss_pred hhHHHHHHhh--cceeeeccccceEEEEecCCc-c-ccc-cccccc--------ccCCceEEEecCCCcEEEeeccCCc-
Confidence 3456666665 679999999999999997633 3 222 345443 3348999999999999999888642
Q ss_pred CCCCCCCCCCceeecccCCceeEEEEecC----CCCEEEEEeCCCcEEEEecCCCCCCCCCCCCCCccceEEEecccCce
Q 004477 130 RGLDDNAITPSALYQCHTRRVKKLAVEVG----NPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAK 205 (751)
Q Consensus 130 ~~~~~~~~~~~~~~~~h~~~V~~l~~sp~----~~~~l~s~s~Dg~I~iwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~ 205 (751)
...++. -..++++|+++|+ ....|++||.-| +.++.-+--... ..+
T Consensus 105 ---------~~~~~d-f~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk----------~~v--------- 154 (846)
T KOG2066|consen 105 ---------EITQYD-FKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNK----------DSV--------- 154 (846)
T ss_pred ---------cceeEe-cCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCc----------cce---------
Confidence 223332 4568899999994 346788999988 766642211100 000
Q ss_pred ecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCccccCCCCCCCCccccccccccccCCccccceEEE
Q 004477 206 RSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHV 285 (751)
Q Consensus 206 ~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~vt~v 285 (751)
......++|.++.|. +++||=++.+| |++||+.+.+.+..++.+...+ ....-...+
T Consensus 155 ----~l~~~eG~I~~i~W~---g~lIAWand~G-v~vyd~~~~~~l~~i~~p~~~~---------------R~e~fpphl 211 (846)
T KOG2066|consen 155 ----VLSEGEGPIHSIKWR---GNLIAWANDDG-VKVYDTPTRQRLTNIPPPSQSV---------------RPELFPPHL 211 (846)
T ss_pred ----eeecCccceEEEEec---CcEEEEecCCC-cEEEeccccceeeccCCCCCCC---------------CcccCCCce
Confidence 112245789999996 46888776665 8999999887665543322111 111123557
Q ss_pred EEcCCCCEEEEEeCCCcEEEEECCC
Q 004477 286 TFSPNGEEVLLSYSGEHVYLMDVNH 310 (751)
Q Consensus 286 ~fspdg~~Ll~~s~d~~I~lwdl~~ 310 (751)
.|.++.+ |+.|.+| +|+|..+..
T Consensus 212 ~W~~~~~-LVIGW~d-~v~i~~I~~ 234 (846)
T KOG2066|consen 212 HWQDEDR-LVIGWGD-SVKICSIKK 234 (846)
T ss_pred EecCCCe-EEEecCC-eEEEEEEec
Confidence 7877654 6666655 788888873
No 308
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=97.86 E-value=1.1e-05 Score=87.47 Aligned_cols=227 Identities=20% Similarity=0.272 Sum_probs=137.7
Q ss_pred EeccCCCcEEEEEECC-CCCEEEEEe----CCCcEEEEeCCCCe----EEEEecccCCcceEEEEEecCCCCcEEEEEEC
Q 004477 45 ELEGHQGCVNAISWNS-KGSLLISGS----DDTHINVWSYSSRK----LLHSIETGHSANVFCTKFVPETSDELVVSGAG 115 (751)
Q Consensus 45 ~L~gH~~~V~~l~~s~-dg~~LaSgs----~Dg~I~IWd~~~~~----~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~ 115 (751)
...+|....++++|++ |.+.||.|- .|..+.|||+.++- .-..+..+-.....+++|..+ .+++.+|..
T Consensus 97 ~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi~s~ltvPke~~~fs~~~l~gqns~cwlrd--~klvlaGm~ 174 (783)
T KOG1008|consen 97 VTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDINSLLTVPKESPLFSSSTLDGQNSVCWLRD--TKLVLAGMT 174 (783)
T ss_pred ecccccccccccccccccHHHHHhhhhhhcccCCccceecccccCCCccccccccccccCccccccccC--cchhhcccc
Confidence 3456777899999998 667888773 47779999988661 222332234455668889866 588889999
Q ss_pred CCcEEEEECCCCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEe-cCCCCCCCCCCCCCCccc
Q 004477 116 DAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHD-FRQGSSCPPAGSSHQECR 194 (751)
Q Consensus 116 Dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwD-lr~~~~~~~~~~~~~~~~ 194 (751)
...|.++|++... .....-.+..|..+...|-.+.++++-. ||.|.+|| .+.-+.....
T Consensus 175 sr~~~ifdlRqs~-----------~~~~svnTk~vqG~tVdp~~~nY~cs~~-dg~iAiwD~~rnienpl~~-------- 234 (783)
T KOG1008|consen 175 SRSVHIFDLRQSL-----------DSVSSVNTKYVQGITVDPFSPNYFCSNS-DGDIAIWDTYRNIENPLQI-------- 234 (783)
T ss_pred cchhhhhhhhhhh-----------hhhhhhhhhhcccceecCCCCCceeccc-cCceeeccchhhhccHHHH--------
Confidence 9999999998421 2222224556777888887778885544 99999999 4443321000
Q ss_pred eEEEecccCceecccCCCCCccceEEEEEeCCCCcEEEEEeCC-CeEEEEeCCCCCCccccCCCCCCCCccccccccccc
Q 004477 195 NILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSD-AFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLS 273 (751)
Q Consensus 195 ~~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D-~~IriwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (751)
.+.........+..++|+|....++++...| ++|++||++....-..... ...+.+..+....
T Consensus 235 ------------i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~~v~t~~s~nn----~~~~~~~s~~~~q 298 (783)
T KOG1008|consen 235 ------------ILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDICVVGTEGSANN----SVFVNYESKYPVQ 298 (783)
T ss_pred ------------HhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEecccccCCcccccc----cceeeeccccccc
Confidence 0111111233688999999877788877765 6899999975321111000 0011111111111
Q ss_pred cCCccccceEEEEEcCCC--CEEEEEeCCCcEEEEECCC
Q 004477 274 EHGRSSLHLTHVTFSPNG--EEVLLSYSGEHVYLMDVNH 310 (751)
Q Consensus 274 ~~g~~~~~vt~v~fspdg--~~Ll~~s~d~~I~lwdl~~ 310 (751)
..+..+ .|.+.+|++-. ...+++...-++..|++..
T Consensus 299 ~~~~~s-~I~~f~wH~~s~~er~il~~~nl~~~Df~V~e 336 (783)
T KOG1008|consen 299 PNSQCS-GIDFFTWHTASPTERQILGVINLQPKDFSVHE 336 (783)
T ss_pred cccccc-ceeecCcCcCCccceeEEeeccCChhhccchh
Confidence 111112 47888888754 3455555566666666554
No 309
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=97.85 E-value=1.2e-05 Score=87.41 Aligned_cols=210 Identities=11% Similarity=0.166 Sum_probs=133.4
Q ss_pred CCcEEEEEECCCC--CEEEEEeCCCcEEEEeCCCCeE-EEEecccCCcceEEEEEecCCCCcEEEEEE----CCCcEEEE
Q 004477 50 QGCVNAISWNSKG--SLLISGSDDTHINVWSYSSRKL-LHSIETGHSANVFCTKFVPETSDELVVSGA----GDAEVRLF 122 (751)
Q Consensus 50 ~~~V~~l~~s~dg--~~LaSgs~Dg~I~IWd~~~~~~-~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs----~Dg~V~vw 122 (751)
...+.|++++.+. .+|+.|..+|.|-+-.+....- -+.+..+|....++++|++-. -+.||.|= .|..+.||
T Consensus 56 tqy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLD-tn~LAagldkhrnds~~~Iw 134 (783)
T KOG1008|consen 56 TQYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELD-TNHLAAGLDKHRNDSSLKIW 134 (783)
T ss_pred CCCceeehhhcCCchhhhhhccccCceEEeecCCcccccceeccccccccccccccccc-HHHHHhhhhhhcccCCccce
Confidence 3467788887654 4899999999999988764322 234447888999999999872 34555552 36789999
Q ss_pred ECCCCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCCCCCCCCCCccceEEEeccc
Q 004477 123 NLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRC 202 (751)
Q Consensus 123 d~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~~~~~~~~~~~~l~~~~~ 202 (751)
|+.+.-.... +......+....+.+++|.. +.+++.+|...+.+.++|+|.......
T Consensus 135 di~s~ltvPk-----e~~~fs~~~l~gqns~cwlr-d~klvlaGm~sr~~~ifdlRqs~~~~~----------------- 191 (783)
T KOG1008|consen 135 DINSLLTVPK-----ESPLFSSSTLDGQNSVCWLR-DTKLVLAGMTSRSVHIFDLRQSLDSVS----------------- 191 (783)
T ss_pred ecccccCCCc-----cccccccccccCcccccccc-Ccchhhcccccchhhhhhhhhhhhhhh-----------------
Confidence 9986422111 11111112344556889985 668888999999999999996431100
Q ss_pred CceecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEe-CCCCC-CccccCCCCCCCCccccccccccccCCcccc
Q 004477 203 GAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYD-RRMLP-PLTSCQKRMSPPPCVNYFCPMHLSEHGRSSL 280 (751)
Q Consensus 203 ~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 280 (751)
.-.+..+..+.+.|-.+.|+++-. |+.|-+|| .++.+ ++..+.... ... ..
T Consensus 192 ---------svnTk~vqG~tVdp~~~nY~cs~~-dg~iAiwD~~rnienpl~~i~~~~----------------N~~-~~ 244 (783)
T KOG1008|consen 192 ---------SVNTKYVQGITVDPFSPNYFCSNS-DGDIAIWDTYRNIENPLQIILRNE----------------NKK-PK 244 (783)
T ss_pred ---------hhhhhhcccceecCCCCCceeccc-cCceeeccchhhhccHHHHHhhCC----------------CCc-cc
Confidence 002334666778886677877765 99999999 55433 111111000 000 11
Q ss_pred ceEEEEEcCCCCE-EEEEeC-CCcEEEEECCC
Q 004477 281 HLTHVTFSPNGEE-VLLSYS-GEHVYLMDVNH 310 (751)
Q Consensus 281 ~vt~v~fspdg~~-Ll~~s~-d~~I~lwdl~~ 310 (751)
.+..++|+|...- |++.+. .++|+++|+..
T Consensus 245 ~l~~~aycPtrtglla~l~RdS~tIrlydi~~ 276 (783)
T KOG1008|consen 245 QLFALAYCPTRTGLLAVLSRDSITIRLYDICV 276 (783)
T ss_pred ceeeEEeccCCcchhhhhccCcceEEEecccc
Confidence 3788999996543 334443 68999999875
No 310
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=97.80 E-value=0.00026 Score=80.09 Aligned_cols=169 Identities=16% Similarity=0.188 Sum_probs=119.9
Q ss_pred ccccccEEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEecccCCcceEEEEEecCCCCcEEEEEEC--
Q 004477 38 RRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAG-- 115 (751)
Q Consensus 38 ~~~~~~~~L~gH~~~V~~l~~s~dg~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~-- 115 (751)
.+.+..+.+.--.+.|.-|.. ++++|.+|..-|+|.+-|..+.+.++++ ..|++.|.++... |++|+||+.
T Consensus 165 ~~~~e~r~~~v~a~~v~imR~--Nnr~lf~G~t~G~V~LrD~~s~~~iht~-~aHs~siSDfDv~----GNlLitCG~S~ 237 (1118)
T KOG1275|consen 165 NTEKETRTTNVSASGVTIMRY--NNRNLFCGDTRGTVFLRDPNSFETIHTF-DAHSGSISDFDVQ----GNLLITCGYSM 237 (1118)
T ss_pred ccceeeeeeeccCCceEEEEe--cCcEEEeecccceEEeecCCcCceeeee-eccccceeeeecc----CCeEEEeeccc
Confidence 344444444444445555554 5789999999999999999999999999 8999999987765 789999874
Q ss_pred -------CCcEEEEECCCCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCCCCCCC
Q 004477 116 -------DAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGS 188 (751)
Q Consensus 116 -------Dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~~~~ 188 (751)
|..|+|||++.- +.+..+.-+.++ .-+.|.|.=...++.++..|.+.+-|..+-.....
T Consensus 238 R~~~l~~D~FvkVYDLRmm----------ral~PI~~~~~P-~flrf~Psl~t~~~V~S~sGq~q~vd~~~lsNP~~--- 303 (1118)
T KOG1275|consen 238 RRYNLAMDPFVKVYDLRMM----------RALSPIQFPYGP-QFLRFHPSLTTRLAVTSQSGQFQFVDTATLSNPPA--- 303 (1118)
T ss_pred ccccccccchhhhhhhhhh----------hccCCcccccCc-hhhhhcccccceEEEEecccceeeccccccCCCcc---
Confidence 778999999863 223333334443 44678886677888899999999988443321100
Q ss_pred CCCccceEEEecccCceecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCC
Q 004477 189 SHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRR 246 (751)
Q Consensus 189 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~ 246 (751)
....++ .....+..+++++. +..++.|..+|.|.+|--+
T Consensus 304 -----~~~~v~-------------p~~s~i~~fDiSsn-~~alafgd~~g~v~~wa~~ 342 (1118)
T KOG1275|consen 304 -----GVKMVN-------------PNGSGISAFDISSN-GDALAFGDHEGHVNLWADR 342 (1118)
T ss_pred -----ceeEEc-------------cCCCcceeEEecCC-CceEEEecccCcEeeecCC
Confidence 001111 12234889999995 7999999999999999844
No 311
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=97.77 E-value=0.0014 Score=72.66 Aligned_cols=123 Identities=16% Similarity=0.219 Sum_probs=88.2
Q ss_pred CCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEecccCCcceEEEEEecCCCCcEEEEEECCCcEEEEECCCCC
Q 004477 49 HQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFS 128 (751)
Q Consensus 49 H~~~V~~l~~s~dg~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~Dg~V~vwd~~~~~ 128 (751)
|...|.--+++..+++|+.|+.-|.|.+|+-..++....-..+-.+.+..+..+++ +.++|.|+..|.|.|+-+....
T Consensus 32 ~~~~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~--e~lvAagt~~g~V~v~ql~~~~ 109 (726)
T KOG3621|consen 32 FPARVKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSV--EYLVAAGTASGRVSVFQLNKEL 109 (726)
T ss_pred CcceEEEEEeecCCceEEEecccceEEEEecCchhhhcccccCccceEEEEEecch--hHhhhhhcCCceEEeehhhccC
Confidence 45566666778889999999999999999977665544332333344555556666 6788889999999999887632
Q ss_pred CCCCCCCCCCCcee-ecccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCC
Q 004477 129 GRGLDDNAITPSAL-YQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQ 179 (751)
Q Consensus 129 ~~~~~~~~~~~~~~-~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~ 179 (751)
.... ..+.. -+.|...|++++|++ ++..|.+|..-|+|..-.+..
T Consensus 110 p~~~-----~~~t~~d~~~~~rVTal~Ws~-~~~k~ysGD~~Gkv~~~~L~s 155 (726)
T KOG3621|consen 110 PRDL-----DYVTPCDKSHKCRVTALEWSK-NGMKLYSGDSQGKVVLTELDS 155 (726)
T ss_pred CCcc-----eeeccccccCCceEEEEEecc-cccEEeecCCCceEEEEEech
Confidence 1110 11111 123789999999999 678888999999998887776
No 312
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=97.77 E-value=0.0068 Score=61.99 Aligned_cols=189 Identities=14% Similarity=0.167 Sum_probs=116.7
Q ss_pred EEEEEEC-CCCCEEEEEeCCCcEEEEeCCCCeEEEEecc---c-CCcceEEEEEecCCCCcEEEEEECC--------CcE
Q 004477 53 VNAISWN-SKGSLLISGSDDTHINVWSYSSRKLLHSIET---G-HSANVFCTKFVPETSDELVVSGAGD--------AEV 119 (751)
Q Consensus 53 V~~l~~s-~dg~~LaSgs~Dg~I~IWd~~~~~~~~~l~~---~-h~~~V~~v~fsp~s~~~~l~sgs~D--------g~V 119 (751)
.+.+.+. ++|.++++ ... .+.++|+.+++....+.. . .....+.+++.|+ |++.++.... +.|
T Consensus 42 ~~G~~~~~~~g~l~v~-~~~-~~~~~d~~~g~~~~~~~~~~~~~~~~~~ND~~vd~~--G~ly~t~~~~~~~~~~~~g~v 117 (246)
T PF08450_consen 42 PNGMAFDRPDGRLYVA-DSG-GIAVVDPDTGKVTVLADLPDGGVPFNRPNDVAVDPD--GNLYVTDSGGGGASGIDPGSV 117 (246)
T ss_dssp EEEEEEECTTSEEEEE-ETT-CEEEEETTTTEEEEEEEEETTCSCTEEEEEEEE-TT--S-EEEEEECCBCTTCGGSEEE
T ss_pred CceEEEEccCCEEEEE-EcC-ceEEEecCCCcEEEEeeccCCCcccCCCceEEEcCC--CCEEEEecCCCccccccccce
Confidence 6777887 66655554 454 456669988865443321 1 4567889999999 7888877654 446
Q ss_pred EEEECCCCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCCCCCCCCCCccceEEEe
Q 004477 120 RLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLD 199 (751)
Q Consensus 120 ~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~~~~~~~~~~~~l~~ 199 (751)
..++.. + + +..+...-...+.|+|+|++..++++-+..+.|..|++...... .....++.+
T Consensus 118 ~~~~~~-~----------~-~~~~~~~~~~pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~~~~~-------~~~~~~~~~ 178 (246)
T PF08450_consen 118 YRIDPD-G----------K-VTVVADGLGFPNGIAFSPDGKTLYVADSFNGRIWRFDLDADGGE-------LSNRRVFID 178 (246)
T ss_dssp EEEETT-S----------E-EEEEEEEESSEEEEEEETTSSEEEEEETTTTEEEEEEEETTTCC-------EEEEEEEEE
T ss_pred EEECCC-C----------e-EEEEecCcccccceEECCcchheeecccccceeEEEeccccccc-------eeeeeeEEE
Confidence 666655 1 1 23333345567899999966556778888999999998754310 011122222
Q ss_pred cccCceecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCccccCCCCCCCCccccccccccccCCccc
Q 004477 200 LRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSS 279 (751)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 279 (751)
+.. .....-.+++.. ++++.++....+.|.++|.. ++.+..+.. | .
T Consensus 179 ~~~-----------~~g~pDG~~vD~-~G~l~va~~~~~~I~~~~p~-G~~~~~i~~------------p---------~ 224 (246)
T PF08450_consen 179 FPG-----------GPGYPDGLAVDS-DGNLWVADWGGGRIVVFDPD-GKLLREIEL------------P---------V 224 (246)
T ss_dssp -SS-----------SSCEEEEEEEBT-TS-EEEEEETTTEEEEEETT-SCEEEEEE-------------S---------S
T ss_pred cCC-----------CCcCCCcceEcC-CCCEEEEEcCCCEEEEECCC-ccEEEEEcC------------C---------C
Confidence 221 123467789998 47888888889999999987 543332210 0 0
Q ss_pred cceEEEEE-cCCCCEEEEEe
Q 004477 280 LHLTHVTF-SPNGEEVLLSY 298 (751)
Q Consensus 280 ~~vt~v~f-spdg~~Ll~~s 298 (751)
..+++++| -++.+.|++.+
T Consensus 225 ~~~t~~~fgg~~~~~L~vTt 244 (246)
T PF08450_consen 225 PRPTNCAFGGPDGKTLYVTT 244 (246)
T ss_dssp SSEEEEEEESTTSSEEEEEE
T ss_pred CCEEEEEEECCCCCEEEEEe
Confidence 14899999 47777777654
No 313
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=97.76 E-value=0.00082 Score=73.48 Aligned_cols=127 Identities=16% Similarity=0.177 Sum_probs=88.5
Q ss_pred cccccEEeccCCCcEEEEEECC-CCCEEEE----EeCCCcE----EEEeCCCCeE--EEEecccCCcceEEEEEecCCCC
Q 004477 39 RLSQERELEGHQGCVNAISWNS-KGSLLIS----GSDDTHI----NVWSYSSRKL--LHSIETGHSANVFCTKFVPETSD 107 (751)
Q Consensus 39 ~~~~~~~L~gH~~~V~~l~~s~-dg~~LaS----gs~Dg~I----~IWd~~~~~~--~~~l~~~h~~~V~~v~fsp~s~~ 107 (751)
+++.+...+.-.++ .++.||. +...+.| .+.+|.+ ++|++...+. +..........|.|++++|+ .
T Consensus 195 klEvL~yirTE~dP-l~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~klqrvsvtsipL~s~v~~ca~sp~--E 271 (545)
T PF11768_consen 195 KLEVLSYIRTENDP-LDVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSRNKLQRVSVTSIPLPSQVICCARSPS--E 271 (545)
T ss_pred cEEEEEEEEecCCc-EEEEccCCCCcEEEEEEEecCCCCCceeEEEEEEeecCceeEEEEEEEecCCcceEEecCcc--c
Confidence 44444444433333 5677776 3444443 3445554 4566654432 22222367889999999999 7
Q ss_pred cEEEEEECCCcEEEEECCCCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCC
Q 004477 108 ELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGS 181 (751)
Q Consensus 108 ~~l~sgs~Dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~ 181 (751)
..|+.|+.||+|.+||...+ +..+....-.++.++|+| ++.+|++|+.-|.+.+||+.-..
T Consensus 272 ~kLvlGC~DgSiiLyD~~~~------------~t~~~ka~~~P~~iaWHp-~gai~~V~s~qGelQ~FD~ALsp 332 (545)
T PF11768_consen 272 DKLVLGCEDGSIILYDTTRG------------VTLLAKAEFIPTLIAWHP-DGAIFVVGSEQGELQCFDMALSP 332 (545)
T ss_pred ceEEEEecCCeEEEEEcCCC------------eeeeeeecccceEEEEcC-CCcEEEEEcCCceEEEEEeecCc
Confidence 99999999999999999854 344445667789999999 77899999999999999987653
No 314
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=97.71 E-value=0.0092 Score=61.45 Aligned_cols=216 Identities=13% Similarity=0.162 Sum_probs=131.7
Q ss_pred EEEEECC-CCCEEEEEeCCCc-EEEEeCCCCeEEEEecccCCcceE--EEEEecCCCCcEEEEEEC-----CCcEEEEEC
Q 004477 54 NAISWNS-KGSLLISGSDDTH-INVWSYSSRKLLHSIETGHSANVF--CTKFVPETSDELVVSGAG-----DAEVRLFNL 124 (751)
Q Consensus 54 ~~l~~s~-dg~~LaSgs~Dg~-I~IWd~~~~~~~~~l~~~h~~~V~--~v~fsp~s~~~~l~sgs~-----Dg~V~vwd~ 124 (751)
..++.+| .+..+|.+-.-|+ ..+||..+++.+..+ ....+.-+ -..|+|+ |++|++.-. .|.|-|||.
T Consensus 8 H~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~-~a~~gRHFyGHg~fs~d--G~~LytTEnd~~~g~G~IgVyd~ 84 (305)
T PF07433_consen 8 HGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRL-WAPPGRHFYGHGVFSPD--GRLLYTTENDYETGRGVIGVYDA 84 (305)
T ss_pred cceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEE-cCCCCCEEecCEEEcCC--CCEEEEeccccCCCcEEEEEEEC
Confidence 4678888 5667777777665 678999999888776 22222221 2469999 899988644 578999999
Q ss_pred CCCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEE-eC------CCcEEEEecCCCCCCCCCCCCCCccceEE
Q 004477 125 SRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSA-SE------DGTLRQHDFRQGSSCPPAGSSHQECRNIL 197 (751)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~-s~------Dg~I~iwDlr~~~~~~~~~~~~~~~~~~l 197 (751)
... +..+..+..|.-....+.+.|+ +..|+.+ +. .|..++ ++.+. ...-++
T Consensus 85 ~~~---------~~ri~E~~s~GIGPHel~l~pD-G~tLvVANGGI~Thpd~GR~kL-Nl~tM-----------~psL~~ 142 (305)
T PF07433_consen 85 ARG---------YRRIGEFPSHGIGPHELLLMPD-GETLVVANGGIETHPDSGRAKL-NLDTM-----------QPSLVY 142 (305)
T ss_pred cCC---------cEEEeEecCCCcChhhEEEcCC-CCEEEEEcCCCccCcccCceec-Chhhc-----------CCceEE
Confidence 832 2557778888777788999994 4444433 11 112211 22222 223456
Q ss_pred EecccCceecccCC--CCCccceEEEEEeCCCCcEEEEEeC-CC-------eEEEEeCCCCCCccccCCCCCCCCccccc
Q 004477 198 LDLRCGAKRSLADP--PKQTLSLKSCDISSTRPHLLLVGGS-DA-------FARLYDRRMLPPLTSCQKRMSPPPCVNYF 267 (751)
Q Consensus 198 ~~~~~~~~~~~~~~--~~~~~~v~~i~~sp~~~~~l~sgs~-D~-------~IriwD~~~~~~~~~~~~~~~~~~~~~~~ 267 (751)
.+..+|........ ..+..++..++++++ +. ++.|.. .+ .|-+++... .+..+.. +....
T Consensus 143 ld~~sG~ll~q~~Lp~~~~~lSiRHLa~~~~-G~-V~~a~Q~qg~~~~~~PLva~~~~g~--~~~~~~~---p~~~~--- 212 (305)
T PF07433_consen 143 LDARSGALLEQVELPPDLHQLSIRHLAVDGD-GT-VAFAMQYQGDPGDAPPLVALHRRGG--ALRLLPA---PEEQW--- 212 (305)
T ss_pred EecCCCceeeeeecCccccccceeeEEecCC-Cc-EEEEEecCCCCCccCCeEEEEcCCC--cceeccC---ChHHH---
Confidence 66777776555555 347788999999985 43 333332 11 122222211 1111000 00000
Q ss_pred cccccccCCccccceEEEEEcCCCCEEEEEeC-CCcEEEEECCCCC
Q 004477 268 CPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYS-GEHVYLMDVNHAG 312 (751)
Q Consensus 268 ~~~~~~~~g~~~~~vt~v~fspdg~~Ll~~s~-d~~I~lwdl~~~~ 312 (751)
..-.+ .+-+|+++++|.++++++- .+.+.+||..++.
T Consensus 213 -------~~l~~-Y~gSIa~~~~g~~ia~tsPrGg~~~~~d~~tg~ 250 (305)
T PF07433_consen 213 -------RRLNG-YIGSIAADRDGRLIAVTSPRGGRVAVWDAATGR 250 (305)
T ss_pred -------HhhCC-ceEEEEEeCCCCEEEEECCCCCEEEEEECCCCC
Confidence 01112 4899999999999888776 7899999999864
No 315
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=97.71 E-value=0.0033 Score=64.77 Aligned_cols=201 Identities=16% Similarity=0.176 Sum_probs=121.6
Q ss_pred CCcEEEEeCCC--CeEEEEecccCCcceEEEEEecCCCCcEEEEEEC---CCcEEEEECCCCCCCCCCCCCCCCceeecc
Q 004477 71 DTHINVWSYSS--RKLLHSIETGHSANVFCTKFVPETSDELVVSGAG---DAEVRLFNLSRFSGRGLDDNAITPSALYQC 145 (751)
Q Consensus 71 Dg~I~IWd~~~--~~~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~---Dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~ 145 (751)
++-|.+|++.+ ++.-......+.++++-++|+|+ .+.|.++.. +|.|--|.+...+|.. ..+.....
T Consensus 15 s~gI~v~~ld~~~g~l~~~~~v~~~~nptyl~~~~~--~~~LY~v~~~~~~ggvaay~iD~~~G~L------t~ln~~~~ 86 (346)
T COG2706 15 SQGIYVFNLDTKTGELSLLQLVAELGNPTYLAVNPD--QRHLYVVNEPGEEGGVAAYRIDPDDGRL------TFLNRQTL 86 (346)
T ss_pred CCceEEEEEeCcccccchhhhccccCCCceEEECCC--CCEEEEEEecCCcCcEEEEEEcCCCCeE------EEeecccc
Confidence 56799999863 33222222467899999999999 678887755 4778888887543322 11111122
Q ss_pred cCCceeEEEEecCCCCEEEEEe-CCCcEEEEecCCCCCCCCCCCCCCccceEEEecccCceecccCCCCCccceEEEEEe
Q 004477 146 HTRRVKKLAVEVGNPHVVWSAS-EDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDIS 224 (751)
Q Consensus 146 h~~~V~~l~~sp~~~~~l~s~s-~Dg~I~iwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~i~~s 224 (751)
-..+.+.+++++ ++++++++. .-|.|.++-++..-.+.. ...++.....+.. .......+....++
T Consensus 87 ~g~~p~yvsvd~-~g~~vf~AnY~~g~v~v~p~~~dG~l~~-------~v~~~~h~g~~p~-----~rQ~~~h~H~a~~t 153 (346)
T COG2706 87 PGSPPCYVSVDE-DGRFVFVANYHSGSVSVYPLQADGSLQP-------VVQVVKHTGSGPH-----ERQESPHVHSANFT 153 (346)
T ss_pred CCCCCeEEEECC-CCCEEEEEEccCceEEEEEcccCCcccc-------ceeeeecCCCCCC-----ccccCCccceeeeC
Confidence 233347899998 556666665 468999998876322110 0111111111100 00112237788999
Q ss_pred CCCCcEEEEEe-CCCeEEEEeCCCCCCccccCCCCCCCCccccccccccccCCccccceEEEEEcCCCCEEEEEeC-CCc
Q 004477 225 STRPHLLLVGG-SDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYS-GEH 302 (751)
Q Consensus 225 p~~~~~l~sgs-~D~~IriwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~vt~v~fspdg~~Ll~~s~-d~~ 302 (751)
|+ +++|++.. .--.|.+|++..++... ..+..+ ..+.....|.|+|+|++..+-.. +++
T Consensus 154 P~-~~~l~v~DLG~Dri~~y~~~dg~L~~--------------~~~~~v----~~G~GPRHi~FHpn~k~aY~v~EL~st 214 (346)
T COG2706 154 PD-GRYLVVPDLGTDRIFLYDLDDGKLTP--------------ADPAEV----KPGAGPRHIVFHPNGKYAYLVNELNST 214 (346)
T ss_pred CC-CCEEEEeecCCceEEEEEcccCcccc--------------cccccc----CCCCCcceEEEcCCCcEEEEEeccCCE
Confidence 95 66776664 33579999998654221 111111 11224678999999999887776 999
Q ss_pred EEEEECCCC
Q 004477 303 VYLMDVNHA 311 (751)
Q Consensus 303 I~lwdl~~~ 311 (751)
|-+|..+..
T Consensus 215 V~v~~y~~~ 223 (346)
T COG2706 215 VDVLEYNPA 223 (346)
T ss_pred EEEEEEcCC
Confidence 999999883
No 316
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=97.66 E-value=0.00023 Score=74.69 Aligned_cols=128 Identities=23% Similarity=0.178 Sum_probs=101.1
Q ss_pred chhHHHHHHHHHhhhcCCChhHHHHHhHHHHhcccCCCC---------CchhhhhHhHHHHHhhcccccchhhhHHHhhH
Q 004477 361 GKCRMLVEIARNSLEEGKHPYYGIEACNEVLEGHLSGIG---------PMLRHECLCIRAALLLKRKWKNDAQMAIRDCY 431 (751)
Q Consensus 361 ~~~~~l~~~~~~~~~~g~~~~~ai~~~~~~i~~~~~~~~---------~~~~~~~~~~ra~~~~~r~w~~d~y~al~d~~ 431 (751)
+...+.++.++..+..|+ |..|+..|..++......-. .+++-.++.|-|+.++|-+=- -.|+..|.
T Consensus 206 ~~A~~~ke~Gn~~fK~gk-~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~---~~Ai~~c~ 281 (397)
T KOG0543|consen 206 EAADRKKERGNVLFKEGK-FKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEY---KEAIESCN 281 (397)
T ss_pred HHHHHHHHhhhHHHhhch-HHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhH---HHHHHHHH
Confidence 344555667777777777 88999999988775543211 122234788999999987632 27899999
Q ss_pred HHhcCCCCCcchHHHHHHHHHHhcchHHHHHHHHHhcccCCCChhhhHHHHHHHHHHHHHH
Q 004477 432 NARRIDSSSFRAHLYMSEALEQLCKYKEALDFAIAAQCLDPSNSVMAEKVENIKKHIAAAE 492 (751)
Q Consensus 432 ~a~~~~~~~~~a~~~~~~~l~~l~~~~~a~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~ 492 (751)
+++.++|++.||.||..+|++.++.+..|...+++++..-|++......+..+.+.+.+..
T Consensus 282 kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~~~~~ 342 (397)
T KOG0543|consen 282 KVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQKIREYE 342 (397)
T ss_pred HHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999877777777777665543
No 317
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.66 E-value=0.0057 Score=69.40 Aligned_cols=210 Identities=12% Similarity=0.130 Sum_probs=125.8
Q ss_pred EECCCCCEEEEEeCCCcEEEEeCCCCeEEEEecccCCcc-eEEEEEecCCCCcEEEEEECCC-----cEEEEECCCCCCC
Q 004477 57 SWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSAN-VFCTKFVPETSDELVVSGAGDA-----EVRLFNLSRFSGR 130 (751)
Q Consensus 57 ~~s~dg~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~-V~~v~fsp~s~~~~l~sgs~Dg-----~V~vwd~~~~~~~ 130 (751)
+|++.+..+|-|+.||.|.+.+- ..+.++.+ +.+... |..+..... -.+|++.+.|. .|+||+++..++.
T Consensus 30 c~~s~~~~vvigt~~G~V~~Ln~-s~~~~~~f-qa~~~siv~~L~~~~~--~~~L~sv~Ed~~~np~llkiw~lek~~~n 105 (933)
T KOG2114|consen 30 CCSSSTGSVVIGTADGRVVILNS-SFQLIRGF-QAYEQSIVQFLYILNK--QNFLFSVGEDEQGNPVLLKIWDLEKVDKN 105 (933)
T ss_pred EEcCCCceEEEeeccccEEEecc-cceeeehh-eecchhhhhHhhcccC--ceEEEEEeecCCCCceEEEEecccccCCC
Confidence 47888999999999999988873 23444666 666666 444433333 35788777665 4899999865332
Q ss_pred CCCCCCCCCc--eeecc-----cCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCCCCCCCCCCccceEEEecccC
Q 004477 131 GLDDNAITPS--ALYQC-----HTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCG 203 (751)
Q Consensus 131 ~~~~~~~~~~--~~~~~-----h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~~~~~~~~~~~~l~~~~~~ 203 (751)
.. ..++ +.+.. ...++.+++.+. +-..+|.|-.+|.|..+.-.--+. ...
T Consensus 106 ~s----P~c~~~~ri~~~~np~~~~p~s~l~Vs~-~l~~Iv~Gf~nG~V~~~~GDi~RD---------rgs--------- 162 (933)
T KOG2114|consen 106 NS----PQCLYEHRIFTIKNPTNPSPASSLAVSE-DLKTIVCGFTNGLVICYKGDILRD---------RGS--------- 162 (933)
T ss_pred CC----cceeeeeeeeccCCCCCCCcceEEEEEc-cccEEEEEecCcEEEEEcCcchhc---------ccc---------
Confidence 10 1222 11122 245688889987 557888888999998874221110 000
Q ss_pred ceecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCccccCCCCCCCCccccccccccccCCccccceE
Q 004477 204 AKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLT 283 (751)
Q Consensus 204 ~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~vt 283 (751)
..........+|+.+++..+ +..++-...-..|.+|.+....+.. ++ ..+.+..+.
T Consensus 163 ---r~~~~~~~~~pITgL~~~~d-~~s~lFv~Tt~~V~~y~l~gr~p~~----------~~----------ld~~G~~ln 218 (933)
T KOG2114|consen 163 ---RQDYSHRGKEPITGLALRSD-GKSVLFVATTEQVMLYSLSGRTPSL----------KV----------LDNNGISLN 218 (933)
T ss_pred ---ceeeeccCCCCceeeEEecC-CceeEEEEecceeEEEEecCCCcce----------ee----------eccCCccce
Confidence 11112224578999999885 4442323334568899887322110 00 123344688
Q ss_pred EEEEcCCCCEEEEEeCCCcEEEEECCCCCcceeeee
Q 004477 284 HVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYT 319 (751)
Q Consensus 284 ~v~fspdg~~Ll~~s~d~~I~lwdl~~~~~~~~~~~ 319 (751)
|.+|++....+++++ +..|++|+... ......+.
T Consensus 219 Css~~~~t~qfIca~-~e~l~fY~sd~-~~~cfaf~ 252 (933)
T KOG2114|consen 219 CSSFSDGTYQFICAG-SEFLYFYDSDG-RGPCFAFE 252 (933)
T ss_pred eeecCCCCccEEEec-CceEEEEcCCC-cceeeeec
Confidence 888887666455544 45899999886 33444444
No 318
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=97.64 E-value=0.012 Score=71.21 Aligned_cols=263 Identities=16% Similarity=0.204 Sum_probs=143.8
Q ss_pred ccccccchhhhccccccEEeccCCCcEEEEEECCCCCEEEEEeC---CCcEEEEeCCCCeEEEEec---ccCCcceEEEE
Q 004477 27 NHSLQMHSSLVRRLSQERELEGHQGCVNAISWNSKGSLLISGSD---DTHINVWSYSSRKLLHSIE---TGHSANVFCTK 100 (751)
Q Consensus 27 ~~~l~~~~~~i~~~~~~~~L~gH~~~V~~l~~s~dg~~LaSgs~---Dg~I~IWd~~~~~~~~~l~---~~h~~~V~~v~ 100 (751)
.+.+++|+.. +.+..+-+.-.+-=.+|+|-|.|+++|+... ...|.+|.- +|-.-..|. ......|..+.
T Consensus 236 ~R~iRVy~Re---G~L~stSE~v~gLe~~l~WrPsG~lIA~~q~~~~~~~VvFfEr-NGLrhgeF~l~~~~~~~~v~~l~ 311 (928)
T PF04762_consen 236 RRVIRVYSRE---GELQSTSEPVDGLEGALSWRPSGNLIASSQRLPDRHDVVFFER-NGLRHGEFTLRFDPEEEKVIELA 311 (928)
T ss_pred eeEEEEECCC---ceEEeccccCCCccCCccCCCCCCEEEEEEEcCCCcEEEEEec-CCcEeeeEecCCCCCCceeeEEE
Confidence 3555565543 2222222222333347899999999999864 445667763 343333331 24567899999
Q ss_pred EecCCCCcEEEEEECCCcEEEEECCCCCCCCCCCCCCCCceeecc-cCCceeEEEEecCCCCEEEEEeCCCcEEEEecCC
Q 004477 101 FVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQC-HTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQ 179 (751)
Q Consensus 101 fsp~s~~~~l~sgs~Dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~-h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~ 179 (751)
|+++ +..||..-.|. |.+|-...--- =..+.+.. ....+..+.|+|.++..|.....+|.+.++++.-
T Consensus 312 Wn~d--s~iLAv~~~~~-vqLWt~~NYHW--------YLKqei~~~~~~~~~~~~Wdpe~p~~L~v~t~~g~~~~~~~~~ 380 (928)
T PF04762_consen 312 WNSD--SEILAVWLEDR-VQLWTRSNYHW--------YLKQEIRFSSSESVNFVKWDPEKPLRLHVLTSNGQYEIYDFAW 380 (928)
T ss_pred ECCC--CCEEEEEecCC-ceEEEeeCCEE--------EEEEEEEccCCCCCCceEECCCCCCEEEEEecCCcEEEEEEEE
Confidence 9999 68888866555 99998874210 01222222 2334556999999988888888878887665543
Q ss_pred CCCCCCCCCCCCccceEEEecccCc----eecccCCC------CCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCC
Q 004477 180 GSSCPPAGSSHQECRNILLDLRCGA----KRSLADPP------KQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLP 249 (751)
Q Consensus 180 ~~~~~~~~~~~~~~~~~l~~~~~~~----~~~~~~~~------~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~ 249 (751)
.................++|-..=. ...+.-+| .....|.+++|++. +..+++-..|+.|.+|......
T Consensus 381 ~v~~s~~~~~~D~g~vaVIDG~~lllTpf~~a~VPPPMs~~~l~~~~~v~~vaf~~~-~~~~avl~~d~~l~~~~~~~~~ 459 (928)
T PF04762_consen 381 DVSRSPGSSPNDNGTVAVIDGNKLLLTPFRRAVVPPPMSSYELELPSPVNDVAFSPS-NSRFAVLTSDGSLSIYEWDLKN 459 (928)
T ss_pred EEEecCCCCccCceEEEEEeCCeEEEecccccCCCchHhceEEcCCCCcEEEEEeCC-CCeEEEEECCCCEEEEEecCCC
Confidence 2211111111122222222211100 00000111 13457899999995 5568999999999999865432
Q ss_pred CccccCCCCCCCCcccccccc--ccccCCccccceEEEEEcCCCCEEEEEeCC---CcEEEEECCC
Q 004477 250 PLTSCQKRMSPPPCVNYFCPM--HLSEHGRSSLHLTHVTFSPNGEEVLLSYSG---EHVYLMDVNH 310 (751)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~--~~~~~g~~~~~vt~v~fspdg~~Ll~~s~d---~~I~lwdl~~ 310 (751)
.... ..+.....+... ...........+..++|..+...+++...+ ..+.++++..
T Consensus 460 ~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 520 (928)
T PF04762_consen 460 MWSV-----KPPKLLSSISLDSMDISDSELPLGSLRQLAWLNDDTLLVLSDSDSNQSKIVLVDIDD 520 (928)
T ss_pred cccc-----cCcchhhhcccccccccccccccccEEEEEEeCCCEEEEEEecCcccceEEEEEecc
Confidence 1100 000000000000 000000112247889998888776666654 6888888854
No 319
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=97.64 E-value=0.0056 Score=62.99 Aligned_cols=210 Identities=17% Similarity=0.200 Sum_probs=115.5
Q ss_pred cEEeccCCCcEEEEEECCCCCEEEEE-----eCCCcEEEEeCC-CCeEEEEecccCCcceEEEEEecCCCCcEEEEEEC-
Q 004477 43 ERELEGHQGCVNAISWNSKGSLLISG-----SDDTHINVWSYS-SRKLLHSIETGHSANVFCTKFVPETSDELVVSGAG- 115 (751)
Q Consensus 43 ~~~L~gH~~~V~~l~~s~dg~~LaSg-----s~Dg~I~IWd~~-~~~~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~- 115 (751)
-+.|.|| -.||+||++|.+. +..|.|-|||.. +.+.+..+ ..|.-.-..+.+.|+ ++.|+.+-.
T Consensus 49 gRHFyGH------g~fs~dG~~LytTEnd~~~g~G~IgVyd~~~~~~ri~E~-~s~GIGPHel~l~pD--G~tLvVANGG 119 (305)
T PF07433_consen 49 GRHFYGH------GVFSPDGRLLYTTENDYETGRGVIGVYDAARGYRRIGEF-PSHGIGPHELLLMPD--GETLVVANGG 119 (305)
T ss_pred CCEEecC------EEEcCCCCEEEEeccccCCCcEEEEEEECcCCcEEEeEe-cCCCcChhhEEEcCC--CCEEEEEcCC
Confidence 3456666 4799999999886 446789999998 66777788 677777788999999 766666531
Q ss_pred ------CCcEEEEECCCCCC--CCCCCCCCCCcee--e--cccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCC
Q 004477 116 ------DAEVRLFNLSRFSG--RGLDDNAITPSAL--Y--QCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSC 183 (751)
Q Consensus 116 ------Dg~V~vwd~~~~~~--~~~~~~~~~~~~~--~--~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~ 183 (751)
.|..++ |+.+.+. ..++..+.+.+.. + .-|...|..+++.+ ++..++..- |.-......
T Consensus 120 I~Thpd~GR~kL-Nl~tM~psL~~ld~~sG~ll~q~~Lp~~~~~lSiRHLa~~~-~G~V~~a~Q-------~qg~~~~~~ 190 (305)
T PF07433_consen 120 IETHPDSGRAKL-NLDTMQPSLVYLDARSGALLEQVELPPDLHQLSIRHLAVDG-DGTVAFAMQ-------YQGDPGDAP 190 (305)
T ss_pred CccCcccCceec-ChhhcCCceEEEecCCCceeeeeecCccccccceeeEEecC-CCcEEEEEe-------cCCCCCccC
Confidence 122222 1111100 0001111122222 3 34777788888887 444443332 222211111
Q ss_pred CCCCCCCCccceEEEecccCceecccCC-----CCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCccccCCCC
Q 004477 184 PPAGSSHQECRNILLDLRCGAKRSLADP-----PKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRM 258 (751)
Q Consensus 184 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~-----~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~~~~~~~~ 258 (751)
-.+.-...+........ ......+-+|++++++....+|+-..+.+-+||..++..+....
T Consensus 191 -----------PLva~~~~g~~~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~d~~tg~~~~~~~--- 256 (305)
T PF07433_consen 191 -----------PLVALHRRGGALRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSPRGGRVAVWDAATGRLLGSVP--- 256 (305)
T ss_pred -----------CeEEEEcCCCcceeccCChHHHHhhCCceEEEEEeCCCCEEEEECCCCCEEEEEECCCCCEeeccc---
Confidence 01111111111111111 11335788999999644455666678899999999876543321
Q ss_pred CCCCccccccccccccCCccccceEEEEEcCCCCEEEEEeCCCcEEEE
Q 004477 259 SPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLM 306 (751)
Q Consensus 259 ~~~~~~~~~~~~~~~~~g~~~~~vt~v~fspdg~~Ll~~s~d~~I~lw 306 (751)
+ . -+..++-.+++ +++++..|.+...
T Consensus 257 -------------l-----~--D~cGva~~~~~--f~~ssG~G~~~~~ 282 (305)
T PF07433_consen 257 -------------L-----P--DACGVAPTDDG--FLVSSGQGQLIRL 282 (305)
T ss_pred -------------c-----C--ceeeeeecCCc--eEEeCCCccEEEc
Confidence 1 1 26778888777 4555555554333
No 320
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.62 E-value=0.00011 Score=77.97 Aligned_cols=95 Identities=24% Similarity=0.204 Sum_probs=81.5
Q ss_pred CcchhHHHHHHHHHhhhcCCChhHHHHHhHHHHhcccCCCCCchhhhhHhHHHHHhhc-ccccchhhhHHHhhHHHhcCC
Q 004477 359 GLGKCRMLVEIARNSLEEGKHPYYGIEACNEVLEGHLSGIGPMLRHECLCIRAALLLK-RKWKNDAQMAIRDCYNARRID 437 (751)
Q Consensus 359 ~~~~~~~l~~~~~~~~~~g~~~~~ai~~~~~~i~~~~~~~~~~~~~~~~~~ra~~~~~-r~w~~d~y~al~d~~~a~~~~ 437 (751)
.......++..+|..+.+++ |..||..|+++|..+++. +..|.|||+.|.. .+|. -.+.||.+|+.++
T Consensus 111 ~~k~A~~lK~~GN~~f~~kk-Y~eAIkyY~~AI~l~p~e------piFYsNraAcY~~lgd~~----~Vied~TkALEl~ 179 (606)
T KOG0547|consen 111 RLKYAAALKTKGNKFFRNKK-YDEAIKYYTQAIELCPDE------PIFYSNRAACYESLGDWE----KVIEDCTKALELN 179 (606)
T ss_pred HHHHHHHHHhhhhhhhhccc-HHHHHHHHHHHHhcCCCC------chhhhhHHHHHHHHhhHH----HHHHHHHHHhhcC
Confidence 34556778888888888888 999999999999988775 4578999999984 4565 4588999999999
Q ss_pred CCCcchHHHHHHHHHHhcchHHHHHHH
Q 004477 438 SSSFRAHLYMSEALEQLCKYKEALDFA 464 (751)
Q Consensus 438 ~~~~~a~~~~~~~l~~l~~~~~a~~~~ 464 (751)
|.++||.+|.++|...||.+.||+.-+
T Consensus 180 P~Y~KAl~RRA~A~E~lg~~~eal~D~ 206 (606)
T KOG0547|consen 180 PDYVKALLRRASAHEQLGKFDEALFDV 206 (606)
T ss_pred cHHHHHHHHHHHHHHhhccHHHHHHhh
Confidence 999999999999999999999998544
No 321
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.62 E-value=0.00057 Score=73.86 Aligned_cols=115 Identities=19% Similarity=0.198 Sum_probs=98.5
Q ss_pred HHHHHHHHhhhcCCChhHHHHHhHHHHhcccCCCCCchhhhhHhHHHHHhhcccccchhhhHHHhhHHHhcCCCCCcchH
Q 004477 365 MLVEIARNSLEEGKHPYYGIEACNEVLEGHLSGIGPMLRHECLCIRAALLLKRKWKNDAQMAIRDCYNARRIDSSSFRAH 444 (751)
Q Consensus 365 ~l~~~~~~~~~~g~~~~~ai~~~~~~i~~~~~~~~~~~~~~~~~~ra~~~~~r~w~~d~y~al~d~~~a~~~~~~~~~a~ 444 (751)
.|...++..+..+. |..|+..|.++|...+.. ...|.+||.+++.. |+.-.|+.++..|+.++|.+..++
T Consensus 4 ~l~~~a~~a~~~~~-~~~Ai~~~~~Al~~~P~~------~~a~~~~a~~~~~~---g~~~eAl~~~~~Al~l~P~~~~a~ 73 (356)
T PLN03088 4 DLEDKAKEAFVDDD-FALAVDLYTQAIDLDPNN------AELYADRAQANIKL---GNFTEAVADANKAIELDPSLAKAY 73 (356)
T ss_pred HHHHHHHHHHHcCC-HHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHc---CCHHHHHHHHHHHHHhCcCCHHHH
Confidence 46777888888888 999999999999877654 45788999999876 557789999999999999999999
Q ss_pred HHHHHHHHHhcchHHHHHHHHHhcccCCCChhhhHHHHHHHHHHH
Q 004477 445 LYMSEALEQLCKYKEALDFAIAAQCLDPSNSVMAEKVENIKKHIA 489 (751)
Q Consensus 445 ~~~~~~l~~l~~~~~a~~~~~~~~~~~p~~~~~~~~~~~~~~~~~ 489 (751)
++++.++..+|++.+|+.+++......|....+...+..+...+.
T Consensus 74 ~~lg~~~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~kl~ 118 (356)
T PLN03088 74 LRKGTACMKLEEYQTAKAALEKGASLAPGDSRFTKLIKECDEKIA 118 (356)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999988876666655555553
No 322
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=97.60 E-value=0.0065 Score=61.55 Aligned_cols=231 Identities=14% Similarity=0.122 Sum_probs=119.7
Q ss_pred cEEeccCCCcEEEEEECCCC-CEEEEEeCCCcEEEEeCCCCeEEEEecccCCcceEEEEEecCCCCcEEEEEECCCcEEE
Q 004477 43 ERELEGHQGCVNAISWNSKG-SLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRL 121 (751)
Q Consensus 43 ~~~L~gH~~~V~~l~~s~dg-~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~Dg~V~v 121 (751)
.+.|.|-...|..|+|+|+. +++|+....+.|...+. +|+.+..+...--+..-.|++.-+ +.++++--.++.+.+
T Consensus 14 ~~~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~-~G~vlr~i~l~g~~D~EgI~y~g~--~~~vl~~Er~~~L~~ 90 (248)
T PF06977_consen 14 AKPLPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSL-DGKVLRRIPLDGFGDYEGITYLGN--GRYVLSEERDQRLYI 90 (248)
T ss_dssp EEE-TT--S-EEEEEEETTTTEEEEEETTTTEEEEEET-T--EEEEEE-SS-SSEEEEEE-ST--TEEEEEETTTTEEEE
T ss_pred eeECCCccCCccccEEcCCCCeEEEEECCCCEEEEEcC-CCCEEEEEeCCCCCCceeEEEECC--CEEEEEEcCCCcEEE
Confidence 46777878889999999975 56777777888888886 578887774333466888999876 677776666899999
Q ss_pred EECCCCCCCCCCCCCCCCc--eeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCCCCCCCCCCccceEEEe
Q 004477 122 FNLSRFSGRGLDDNAITPS--ALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLD 199 (751)
Q Consensus 122 wd~~~~~~~~~~~~~~~~~--~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~~~~~~~~~~~~l~~ 199 (751)
+++........ ......+ .....++..+-.++|.|.+..+| .+-+....++|.+..-.. .....+...
T Consensus 91 ~~~~~~~~~~~-~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~-v~kE~~P~~l~~~~~~~~--------~~~~~~~~~ 160 (248)
T PF06977_consen 91 FTIDDDTTSLD-RADVQKISLGFPNKGNKGFEGLAYDPKTNRLF-VAKERKPKRLYEVNGFPG--------GFDLFVSDD 160 (248)
T ss_dssp EEE----TT---EEEEEEEE---S---SS--EEEEEETTTTEEE-EEEESSSEEEEEEESTT---------SS--EEEE-
T ss_pred EEEeccccccc-hhhceEEecccccCCCcceEEEEEcCCCCEEE-EEeCCCChhhEEEccccC--------ccceeeccc
Confidence 99954321110 0000000 01123556688999999555555 556666777777664210 000011110
Q ss_pred cccCceecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCccccCCCCCCCCccccccccccccCCccc
Q 004477 200 LRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSS 279 (751)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 279 (751)
.. +.........+.+++++|..+++++.......|.++| ..++++..+...... +- -.+.-
T Consensus 161 ~~------~~~~~~~~~d~S~l~~~p~t~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~----------~g--l~~~~ 221 (248)
T PF06977_consen 161 QD------LDDDKLFVRDLSGLSYDPRTGHLLILSDESRLLLELD-RQGRVVSSLSLDRGF----------HG--LSKDI 221 (248)
T ss_dssp HH------HH-HT--SS---EEEEETTTTEEEEEETTTTEEEEE--TT--EEEEEE-STTG----------GG---SS--
T ss_pred cc------cccccceeccccceEEcCCCCeEEEEECCCCeEEEEC-CCCCEEEEEEeCCcc----------cC--ccccc
Confidence 00 0001112345788999998888999999999999999 455543322111000 00 00001
Q ss_pred cceEEEEEcCCCCEEEEEeCCCcEEEE
Q 004477 280 LHLTHVTFSPNGEEVLLSYSGEHVYLM 306 (751)
Q Consensus 280 ~~vt~v~fspdg~~Ll~~s~d~~I~lw 306 (751)
...-.|+|+++|+..+ .+.-+..|+|
T Consensus 222 ~QpEGIa~d~~G~LYI-vsEpNlfy~f 247 (248)
T PF06977_consen 222 PQPEGIAFDPDGNLYI-VSEPNLFYRF 247 (248)
T ss_dssp -SEEEEEE-TT--EEE-EETTTEEEEE
T ss_pred CCccEEEECCCCCEEE-EcCCceEEEe
Confidence 1367899999996544 4466677766
No 323
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=97.51 E-value=0.00023 Score=72.23 Aligned_cols=116 Identities=22% Similarity=0.161 Sum_probs=93.9
Q ss_pred cchhHHHHHHHHHhhhcCCChhHHHHHhHHHHhcccCCCCCchhhhhHhHHHHHhhcccccchhhhHHHhhHHHhcCCCC
Q 004477 360 LGKCRMLVEIARNSLEEGKHPYYGIEACNEVLEGHLSGIGPMLRHECLCIRAALLLKRKWKNDAQMAIRDCYNARRIDSS 439 (751)
Q Consensus 360 ~~~~~~l~~~~~~~~~~g~~~~~ai~~~~~~i~~~~~~~~~~~~~~~~~~ra~~~~~r~w~~d~y~al~d~~~a~~~~~~ 439 (751)
.+..-++++.++..+.+|. |..||.-|+..|...+-+ +.++.|||++|++.+-. -.|-.||..|+.||-.
T Consensus 94 L~~~SEiKE~GN~yFKQgK-y~EAIDCYs~~ia~~P~N------pV~~~NRA~AYlk~K~F---A~AE~DC~~AiaLd~~ 163 (536)
T KOG4648|consen 94 LKKASEIKERGNTYFKQGK-YEEAIDCYSTAIAVYPHN------PVYHINRALAYLKQKSF---AQAEEDCEAAIALDKL 163 (536)
T ss_pred HHhhHHHHHhhhhhhhccc-hhHHHHHhhhhhccCCCC------ccchhhHHHHHHHHHHH---HHHHHhHHHHHHhhHH
Confidence 3444557788888888888 888999999888876533 35788999999987753 3678999999999999
Q ss_pred CcchHHHHHHHHHHhcchHHHHHHHHHhcccCCCChhhhHHHHHHH
Q 004477 440 SFRAHLYMSEALEQLCKYKEALDFAIAAQCLDPSNSVMAEKVENIK 485 (751)
Q Consensus 440 ~~~a~~~~~~~l~~l~~~~~a~~~~~~~~~~~p~~~~~~~~~~~~~ 485 (751)
+.||+.|.+.|-..||...||..-.+.+..+-|....+......+.
T Consensus 164 Y~KAYSRR~~AR~~Lg~~~EAKkD~E~vL~LEP~~~ELkK~~a~i~ 209 (536)
T KOG4648|consen 164 YVKAYSRRMQARESLGNNMEAKKDCETVLALEPKNIELKKSLARIN 209 (536)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHhHHHHHhhCcccHHHHHHHHHhc
Confidence 9999999999999999999999888888888887666554444443
No 324
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=97.51 E-value=0.0003 Score=71.42 Aligned_cols=96 Identities=21% Similarity=0.246 Sum_probs=73.1
Q ss_pred HHHHHHHHHhhhcCCChhHHHHHhHHHHhcccCCCCCchhhhhHhHHHHHhhcccccchhhhHHHhhHHHhcCCCCCcch
Q 004477 364 RMLVEIARNSLEEGKHPYYGIEACNEVLEGHLSGIGPMLRHECLCIRAALLLKRKWKNDAQMAIRDCYNARRIDSSSFRA 443 (751)
Q Consensus 364 ~~l~~~~~~~~~~g~~~~~ai~~~~~~i~~~~~~~~~~~~~~~~~~ra~~~~~r~w~~d~y~al~d~~~a~~~~~~~~~a 443 (751)
+-.++.+|..+.... |..|+..|++.|..- +..+.+...||.||||+-.--+ .--.||.||..|+.++|.|.||
T Consensus 82 en~KeeGN~~fK~Kr-yk~A~~~Yt~Glk~k--c~D~dlnavLY~NRAAa~~~l~---NyRs~l~Dcs~al~~~P~h~Ka 155 (390)
T KOG0551|consen 82 ENYKEEGNEYFKEKR-YKDAVESYTEGLKKK--CADPDLNAVLYTNRAAAQLYLG---NYRSALNDCSAALKLKPTHLKA 155 (390)
T ss_pred HHHHHHhHHHHHhhh-HHHHHHHHHHHHhhc--CCCccHHHHHHhhHHHHHHHHH---HHHHHHHHHHHHHhcCcchhhh
Confidence 334455555554444 778888999888744 3456777889999999975432 2335799999999999999999
Q ss_pred HHHHHHHHHHhcchHHHHHHHH
Q 004477 444 HLYMSEALEQLCKYKEALDFAI 465 (751)
Q Consensus 444 ~~~~~~~l~~l~~~~~a~~~~~ 465 (751)
.+|-++|+++|.++.+|..+-+
T Consensus 156 ~~R~Akc~~eLe~~~~a~nw~e 177 (390)
T KOG0551|consen 156 YIRGAKCLLELERFAEAVNWCE 177 (390)
T ss_pred hhhhhHHHHHHHHHHHHHHHHh
Confidence 9999999999999888774443
No 325
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=97.51 E-value=0.0002 Score=48.40 Aligned_cols=38 Identities=34% Similarity=0.688 Sum_probs=35.0
Q ss_pred cccEEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEe
Q 004477 41 SQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWS 78 (751)
Q Consensus 41 ~~~~~L~gH~~~V~~l~~s~dg~~LaSgs~Dg~I~IWd 78 (751)
+++..+..|...|+++.|++++.++++++.|+.+++|+
T Consensus 3 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 3 ELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred EEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 45678889999999999999999999999999999996
No 326
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=97.47 E-value=0.00048 Score=75.20 Aligned_cols=74 Identities=15% Similarity=0.204 Sum_probs=63.8
Q ss_pred cCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEecccCCcceEEEEEecCCCCcEEEEEECCCcEEEEECCC
Q 004477 48 GHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSR 126 (751)
Q Consensus 48 gH~~~V~~l~~s~dg~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~Dg~V~vwd~~~ 126 (751)
.+...|.|++++|+.+.|+.|+.||.|++||...+.... ..+.-..+.++|+|+ |.+|++|+.-|.+.+||+..
T Consensus 257 pL~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t~~---~ka~~~P~~iaWHp~--gai~~V~s~qGelQ~FD~AL 330 (545)
T PF11768_consen 257 PLPSQVICCARSPSEDKLVLGCEDGSIILYDTTRGVTLL---AKAEFIPTLIAWHPD--GAIFVVGSEQGELQCFDMAL 330 (545)
T ss_pred ecCCcceEEecCcccceEEEEecCCeEEEEEcCCCeeee---eeecccceEEEEcCC--CcEEEEEcCCceEEEEEeec
Confidence 467899999999999999999999999999987663332 234566889999999 89999999999999999985
No 327
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.47 E-value=0.00053 Score=71.60 Aligned_cols=105 Identities=24% Similarity=0.171 Sum_probs=88.8
Q ss_pred cCcchhHHHHHHHHHhhhcCCChhHHHHHhHHHHhcccCCCCCchhhhhHhHHHHHhhcccccchhhhHHHhhHHHhcCC
Q 004477 358 TGLGKCRMLVEIARNSLEEGKHPYYGIEACNEVLEGHLSGIGPMLRHECLCIRAALLLKRKWKNDAQMAIRDCYNARRID 437 (751)
Q Consensus 358 ~~~~~~~~l~~~~~~~~~~g~~~~~ai~~~~~~i~~~~~~~~~~~~~~~~~~ra~~~~~r~w~~d~y~al~d~~~a~~~~ 437 (751)
..++.++.-.+.++..+.+|. |..+-+.|.++|..-+.+..+. ..||+|||+..++-+- .-.|+.||..|+.||
T Consensus 244 ~~~k~le~~k~~gN~~fk~G~-y~~A~E~Yteal~idP~n~~~n--aklY~nra~v~~rLgr---l~eaisdc~~Al~iD 317 (486)
T KOG0550|consen 244 MMPKKLEVKKERGNDAFKNGN-YRKAYECYTEALNIDPSNKKTN--AKLYGNRALVNIRLGR---LREAISDCNEALKID 317 (486)
T ss_pred hhHHHHHHHHhhhhhHhhccc-hhHHHHHHHHhhcCCccccchh--HHHHHHhHhhhcccCC---chhhhhhhhhhhhcC
Confidence 355666777778888888898 9999999999999887765543 4599999999987765 455999999999999
Q ss_pred CCCcchHHHHHHHHHHhcchHHHHHHHHHhc
Q 004477 438 SSSFRAHLYMSEALEQLCKYKEALDFAIAAQ 468 (751)
Q Consensus 438 ~~~~~a~~~~~~~l~~l~~~~~a~~~~~~~~ 468 (751)
+.+.||..+.++|.+.|+.+.+|...+++..
T Consensus 318 ~syikall~ra~c~l~le~~e~AV~d~~~a~ 348 (486)
T KOG0550|consen 318 SSYIKALLRRANCHLALEKWEEAVEDYEKAM 348 (486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999997776554
No 328
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=97.46 E-value=0.00047 Score=73.75 Aligned_cols=122 Identities=19% Similarity=0.169 Sum_probs=101.3
Q ss_pred hHHHHHHHHHhhhcCCChhHHHHHhHHHHhcccCCCCCchhhhhHhHHHHHhhcccccchhhhHHHhhHHHhcCCCCCcc
Q 004477 363 CRMLVEIARNSLEEGKHPYYGIEACNEVLEGHLSGIGPMLRHECLCIRAALLLKRKWKNDAQMAIRDCYNARRIDSSSFR 442 (751)
Q Consensus 363 ~~~l~~~~~~~~~~g~~~~~ai~~~~~~i~~~~~~~~~~~~~~~~~~ra~~~~~r~w~~d~y~al~d~~~a~~~~~~~~~ 442 (751)
..+++..++..+.... |..+|..|+++|...+++ ...|.+||.+.++-.- ...|+.|+.+|++++|...|
T Consensus 4 a~e~k~ean~~l~~~~-fd~avdlysKaI~ldpnc------a~~~anRa~a~lK~e~---~~~Al~Da~kaie~dP~~~K 73 (476)
T KOG0376|consen 4 AEELKNEANEALKDKV-FDVAVDLYSKAIELDPNC------AIYFANRALAHLKVES---FGGALHDALKAIELDPTYIK 73 (476)
T ss_pred hhhhhhHHhhhcccch-HHHHHHHHHHHHhcCCcc------eeeechhhhhheeech---hhhHHHHHHhhhhcCchhhh
Confidence 3455667777777766 899999999999988876 4578999999998654 56799999999999999999
Q ss_pred hHHHHHHHHHHhcchHHHHHHHHHhcccCCCChhhhHHHHHHHHHHHHHHhh
Q 004477 443 AHLYMSEALEQLCKYKEALDFAIAAQCLDPSNSVMAEKVENIKKHIAAAETE 494 (751)
Q Consensus 443 a~~~~~~~l~~l~~~~~a~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~ 494 (751)
+++|.+.+-..++++++|...++......|....+.+.+......+....++
T Consensus 74 ~Y~rrg~a~m~l~~~~~A~~~l~~~~~l~Pnd~~~~r~~~Ec~~~vs~~~fe 125 (476)
T KOG0376|consen 74 AYVRRGTAVMALGEFKKALLDLEKVKKLAPNDPDATRKIDECNKIVSEEKFE 125 (476)
T ss_pred eeeeccHHHHhHHHHHHHHHHHHHhhhcCcCcHHHHHHHHHHHHHHHHHhhh
Confidence 9999999999999999999999999999998877666666555555444443
No 329
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=97.36 E-value=0.00086 Score=72.40 Aligned_cols=112 Identities=20% Similarity=0.133 Sum_probs=95.1
Q ss_pred HHHHHHHHHhhhcCCChhHHHHHhHHHHhcccCCCCCchhhhhHhHHHHHhhcccccchhhhHHHhhHHHhcCCCCCcch
Q 004477 364 RMLVEIARNSLEEGKHPYYGIEACNEVLEGHLSGIGPMLRHECLCIRAALLLKRKWKNDAQMAIRDCYNARRIDSSSFRA 443 (751)
Q Consensus 364 ~~l~~~~~~~~~~g~~~~~ai~~~~~~i~~~~~~~~~~~~~~~~~~ra~~~~~r~w~~d~y~al~d~~~a~~~~~~~~~a 443 (751)
..+++.++..++.|. |..+|..|.++|..-+. .|.+|+||.+++.+-+- .-.|+.|..+++.+.|.=+|+
T Consensus 3 ~e~k~kgnaa~s~~d-~~~ai~~~t~ai~l~p~------nhvlySnrsaa~a~~~~---~~~al~da~k~~~l~p~w~kg 72 (539)
T KOG0548|consen 3 VELKEKGNAAFSSGD-FETAIRLFTEAIMLSPT------NHVLYSNRSAAYASLGS---YEKALKDATKTRRLNPDWAKG 72 (539)
T ss_pred hHHHHHHHhhccccc-HHHHHHHHHHHHccCCC------ccchhcchHHHHHHHhh---HHHHHHHHHHHHhcCCchhhH
Confidence 456778899999998 99999999999985533 48999999999998765 456899999999999999999
Q ss_pred HHHHHHHHHHhcchHHHHHHHHHhcccCCCChhhhHHHHHHH
Q 004477 444 HLYMSEALEQLCKYKEALDFAIAAQCLDPSNSVMAEKVENIK 485 (751)
Q Consensus 444 ~~~~~~~l~~l~~~~~a~~~~~~~~~~~p~~~~~~~~~~~~~ 485 (751)
++|+.-+++-||++.+|......-....|+...+-.++....
T Consensus 73 y~r~Gaa~~~lg~~~eA~~ay~~GL~~d~~n~~L~~gl~~a~ 114 (539)
T KOG0548|consen 73 YSRKGAALFGLGDYEEAILAYSEGLEKDPSNKQLKTGLAQAY 114 (539)
T ss_pred HHHhHHHHHhcccHHHHHHHHHHHhhcCCchHHHHHhHHHhh
Confidence 999999999999999999888888888888766655544433
No 330
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=97.33 E-value=0.016 Score=58.62 Aligned_cols=193 Identities=17% Similarity=0.160 Sum_probs=108.9
Q ss_pred CCCEEEEEeCCCcEEEEeCCCCeEEEEecccCCcceEEEEEecCCCCcEEEEEECCCcEEEEECCCCCCCCCCCCCCCCc
Q 004477 61 KGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPS 140 (751)
Q Consensus 61 dg~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~Dg~V~vwd~~~~~~~~~~~~~~~~~ 140 (751)
++.++.+++.++.|..||..+|+.+..+.. .+.+...... . +..++.+..|+.|..+|..++ +.+
T Consensus 35 ~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~--~~~~~~~~~~-~--~~~v~v~~~~~~l~~~d~~tG----------~~~ 99 (238)
T PF13360_consen 35 DGGRVYVASGDGNLYALDAKTGKVLWRFDL--PGPISGAPVV-D--GGRVYVGTSDGSLYALDAKTG----------KVL 99 (238)
T ss_dssp ETTEEEEEETTSEEEEEETTTSEEEEEEEC--SSCGGSGEEE-E--TTEEEEEETTSEEEEEETTTS----------CEE
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEeec--cccccceeee-c--ccccccccceeeeEecccCCc----------cee
Confidence 566777778999999999999999887732 2222221222 2 456677778889999998865 223
Q ss_pred eee-cccC---CceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCCCCCCCCCCccceEEEecccCceecccCCCCCcc
Q 004477 141 ALY-QCHT---RRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTL 216 (751)
Q Consensus 141 ~~~-~~h~---~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 216 (751)
... .... .......... .+..++.+..++.|..+|+++++. +|....+........ ....
T Consensus 100 W~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~g~l~~~d~~tG~~--------------~w~~~~~~~~~~~~~-~~~~ 163 (238)
T PF13360_consen 100 WSIYLTSSPPAGVRSSSSPAV-DGDRLYVGTSSGKLVALDPKTGKL--------------LWKYPVGEPRGSSPI-SSFS 163 (238)
T ss_dssp EEEEE-SSCTCSTB--SEEEE-ETTEEEEEETCSEEEEEETTTTEE--------------EEEEESSTT-SS--E-EEET
T ss_pred eeeccccccccccccccCceE-ecCEEEEEeccCcEEEEecCCCcE--------------EEEeecCCCCCCcce-eeec
Confidence 331 2111 1111222222 246677888899999999999863 333221110000000 0000
Q ss_pred ce-EEEEEeCCCCcEEEEEeCCCe-EEEEeCCCCCCccccCCCCCCCCccccccccccccCCccccceEEEEEcCCCCEE
Q 004477 217 SL-KSCDISSTRPHLLLVGGSDAF-ARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEV 294 (751)
Q Consensus 217 ~v-~~i~~sp~~~~~l~sgs~D~~-IriwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~vt~v~fspdg~~L 294 (751)
.+ ..+.+. ++ .+.+++.++. +.+ |+.+++.+... + . . .+.. ....++..|
T Consensus 164 ~~~~~~~~~--~~-~v~~~~~~g~~~~~-d~~tg~~~w~~--------------~--~------~-~~~~-~~~~~~~~l 215 (238)
T PF13360_consen 164 DINGSPVIS--DG-RVYVSSGDGRVVAV-DLATGEKLWSK--------------P--I------S-GIYS-LPSVDGGTL 215 (238)
T ss_dssp TEEEEEECC--TT-EEEEECCTSSEEEE-ETTTTEEEEEE--------------C--S------S--ECE-CEECCCTEE
T ss_pred ccccceEEE--CC-EEEEEcCCCeEEEE-ECCCCCEEEEe--------------c--C------C-CccC-CceeeCCEE
Confidence 11 222233 23 6666776774 555 98876522110 0 0 0 1111 245778888
Q ss_pred EEEeCCCcEEEEECCCCC
Q 004477 295 LLSYSGEHVYLMDVNHAG 312 (751)
Q Consensus 295 l~~s~d~~I~lwdl~~~~ 312 (751)
++.+.++.|+.||+.+++
T Consensus 216 ~~~~~~~~l~~~d~~tG~ 233 (238)
T PF13360_consen 216 YVTSSDGRLYALDLKTGK 233 (238)
T ss_dssp EEEETTTEEEEEETTTTE
T ss_pred EEEeCCCEEEEEECCCCC
Confidence 888899999999999964
No 331
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=97.31 E-value=0.00028 Score=79.28 Aligned_cols=163 Identities=22% Similarity=0.244 Sum_probs=110.6
Q ss_pred EEEEecccCCcceEEEEEecCCCCcEEEEEECCCcEEEEECCCCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEE
Q 004477 84 LLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVV 163 (751)
Q Consensus 84 ~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~Dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l 163 (751)
...+| ..|...-+|++|+-. .+.|+.|+..|.|+++++.++. -.....||...|+-+.-+-++..+|
T Consensus 1093 ~w~~f-rd~~~~fTc~afs~~--~~hL~vG~~~Geik~~nv~sG~----------~e~s~ncH~SavT~vePs~dgs~~L 1159 (1516)
T KOG1832|consen 1093 SWRSF-RDETALFTCIAFSGG--TNHLAVGSHAGEIKIFNVSSGS----------MEESVNCHQSAVTLVEPSVDGSTQL 1159 (1516)
T ss_pred cchhh-hccccceeeEEeecC--CceEEeeeccceEEEEEccCcc----------ccccccccccccccccccCCcceee
Confidence 34445 678899999999998 6899999999999999999763 3556789999999999888665556
Q ss_pred EEEeCCC-cEEEEecCCCCCCCCCCCCCCccceEEEecccCceecccCCCCC-ccceEEEEEeCCCCcEEEEEeCCCeEE
Q 004477 164 WSASEDG-TLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQ-TLSLKSCDISSTRPHLLLVGGSDAFAR 241 (751)
Q Consensus 164 ~s~s~Dg-~I~iwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~v~~i~~sp~~~~~l~sgs~D~~Ir 241 (751)
.+++... -..+|++..--.. .| -..-.++.|+.. ...-+.|..-..+.
T Consensus 1160 tsss~S~PlsaLW~~~s~~~~-----------------------------~Hsf~ed~~vkFsn~-~q~r~~gt~~d~a~ 1209 (1516)
T KOG1832|consen 1160 TSSSSSSPLSALWDASSTGGP-----------------------------RHSFDEDKAVKFSNS-LQFRALGTEADDAL 1209 (1516)
T ss_pred eeccccCchHHHhccccccCc-----------------------------cccccccceeehhhh-HHHHHhcccccceE
Confidence 5555544 4668887652211 01 123456677653 33344455556789
Q ss_pred EEeCCCCCCccccCCCCCCCCccccccccccccCCccccceEEEEEcCCCCEEEEEeCCCcEEEEECCCC
Q 004477 242 LYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHA 311 (751)
Q Consensus 242 iwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~vt~v~fspdg~~Ll~~s~d~~I~lwdl~~~ 311 (751)
|||+.+..++.+ ++.+... .++.-+++.|+|+.+.++-- | .|||++..
T Consensus 1210 ~YDvqT~~~l~t------------ylt~~~~-----~~y~~n~a~FsP~D~LIlnd---G--vLWDvR~~ 1257 (1516)
T KOG1832|consen 1210 LYDVQTCSPLQT------------YLTDTVT-----SSYSNNLAHFSPCDTLILND---G--VLWDVRIP 1257 (1516)
T ss_pred EEecccCcHHHH------------hcCcchh-----hhhhccccccCCCcceEeeC---c--eeeeeccH
Confidence 999998775433 2222111 11224678999999877733 3 58999885
No 332
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=97.30 E-value=0.038 Score=60.49 Aligned_cols=104 Identities=17% Similarity=0.231 Sum_probs=63.0
Q ss_pred CCCEEEEEeCCCcEEEEeCCCCeEEEEecccCCcceEEEEEecCCCCcEEEEEECCCcEEEEECCCCCCCCCCCCCCCCc
Q 004477 61 KGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPS 140 (751)
Q Consensus 61 dg~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~Dg~V~vwd~~~~~~~~~~~~~~~~~ 140 (751)
++..++.++.|+.|..+|..+|+.+...... +.+.+.-... +..++.++.++.|..||..++. .+
T Consensus 104 ~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~--~~~~~~p~v~---~~~v~v~~~~g~l~a~d~~tG~----------~~ 168 (377)
T TIGR03300 104 DGGLVFVGTEKGEVIALDAEDGKELWRAKLS--SEVLSPPLVA---NGLVVVRTNDGRLTALDAATGE----------RL 168 (377)
T ss_pred cCCEEEEEcCCCEEEEEECCCCcEeeeeccC--ceeecCCEEE---CCEEEEECCCCeEEEEEcCCCc----------ee
Confidence 4567778888999999999899888766322 2232211111 3567777789999999998652 12
Q ss_pred eeecccCCce-----eEEEEecCCCCEEEEEeCCCcEEEEecCCCCC
Q 004477 141 ALYQCHTRRV-----KKLAVEVGNPHVVWSASEDGTLRQHDFRQGSS 182 (751)
Q Consensus 141 ~~~~~h~~~V-----~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~ 182 (751)
..+......+ .+.... + ..++.+..+|.+..+|+++++.
T Consensus 169 W~~~~~~~~~~~~~~~sp~~~--~-~~v~~~~~~g~v~ald~~tG~~ 212 (377)
T TIGR03300 169 WTYSRVTPALTLRGSASPVIA--D-GGVLVGFAGGKLVALDLQTGQP 212 (377)
T ss_pred eEEccCCCceeecCCCCCEEE--C-CEEEEECCCCEEEEEEccCCCE
Confidence 2222111110 011111 2 3566777888898888887764
No 333
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.29 E-value=0.0022 Score=66.61 Aligned_cols=97 Identities=14% Similarity=0.197 Sum_probs=76.9
Q ss_pred EEEEeCCCCeEEEEecccCCcceEEEEEecCCCCcEEEEEECCCcEEEEECCCCCCCCCCCCCCCCceeecccCCceeEE
Q 004477 74 INVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKL 153 (751)
Q Consensus 74 I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~Dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l 153 (751)
|+..+..+.+... +..+|...|.+++|+|.. .-++..++.+.+|+|.|+++. ..+..+..| ..++++
T Consensus 175 v~~l~~~~fkssq-~lp~~g~~IrdlafSp~~-~GLl~~asl~nkiki~dlet~----------~~vssy~a~-~~~wSC 241 (463)
T KOG1645|consen 175 VQKLESHDFKSSQ-ILPGEGSFIRDLAFSPFN-EGLLGLASLGNKIKIMDLETS----------CVVSSYIAY-NQIWSC 241 (463)
T ss_pred eEEeccCCcchhh-cccccchhhhhhccCccc-cceeeeeccCceEEEEecccc----------eeeeheecc-CCceee
Confidence 4444444444444 336888999999999994 337889999999999999974 335666666 789999
Q ss_pred EEecCCCCEEEEEeCCCcEEEEecCCCCCC
Q 004477 154 AVEVGNPHVVWSASEDGTLRQHDFRQGSSC 183 (751)
Q Consensus 154 ~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~ 183 (751)
+|.-++.+++..|-..|.|.+||+|..+..
T Consensus 242 ~wDlde~h~IYaGl~nG~VlvyD~R~~~~~ 271 (463)
T KOG1645|consen 242 CWDLDERHVIYAGLQNGMVLVYDMRQPEGP 271 (463)
T ss_pred eeccCCcceeEEeccCceEEEEEccCCCch
Confidence 999988889999999999999999987643
No 334
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=97.27 E-value=0.00047 Score=66.94 Aligned_cols=97 Identities=21% Similarity=0.179 Sum_probs=82.1
Q ss_pred chhHHHHHHHHHhhhcCCChhHHHHHhHHHHhcccCCCCCchhhhhHhHHHHHhhcccccchhhhHHHhhHHHhcCCCCC
Q 004477 361 GKCRMLVEIARNSLEEGKHPYYGIEACNEVLEGHLSGIGPMLRHECLCIRAALLLKRKWKNDAQMAIRDCYNARRIDSSS 440 (751)
Q Consensus 361 ~~~~~l~~~~~~~~~~g~~~~~ai~~~~~~i~~~~~~~~~~~~~~~~~~ra~~~~~r~w~~d~y~al~d~~~a~~~~~~~ 440 (751)
....++.+.++..+.+.. |-.||..|..+|...+.. ..-|.|||..+++.+- .-.+..||.+|++++|+.
T Consensus 8 ~~a~qlkE~gnk~f~~k~-y~~ai~~y~raI~~nP~~------~~Y~tnralchlk~~~---~~~v~~dcrralql~~N~ 77 (284)
T KOG4642|consen 8 ESAEQLKEQGNKCFIPKR-YDDAIDCYSRAICINPTV------ASYYTNRALCHLKLKH---WEPVEEDCRRALQLDPNL 77 (284)
T ss_pred hHHHHHHhccccccchhh-hchHHHHHHHHHhcCCCc------chhhhhHHHHHHHhhh---hhhhhhhHHHHHhcChHH
Confidence 345677778888877777 889999999999877554 3467899999998662 236789999999999999
Q ss_pred cchHHHHHHHHHHhcchHHHHHHHHHh
Q 004477 441 FRAHLYMSEALEQLCKYKEALDFAIAA 467 (751)
Q Consensus 441 ~~a~~~~~~~l~~l~~~~~a~~~~~~~ 467 (751)
+|+||.+..++++...+.+|+.++...
T Consensus 78 vk~h~flg~~~l~s~~~~eaI~~Lqra 104 (284)
T KOG4642|consen 78 VKAHYFLGQWLLQSKGYDEAIKVLQRA 104 (284)
T ss_pred HHHHHHHHHHHHhhccccHHHHHHHHH
Confidence 999999999999999999999988776
No 335
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=97.23 E-value=0.027 Score=61.63 Aligned_cols=104 Identities=16% Similarity=0.133 Sum_probs=65.4
Q ss_pred CCCEEEEEeCCCcEEEEeCCCCeEEEEecccCCcceEEEEEecCCCCcEEEEEECCCcEEEEECCCCCCCCCCCCCCCCc
Q 004477 61 KGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPS 140 (751)
Q Consensus 61 dg~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~Dg~V~vwd~~~~~~~~~~~~~~~~~ 140 (751)
.+..+..++.++.|.-+|..+|+.+..+..+ ........ .+ +..++.++.++.|..+|..++. .+
T Consensus 64 ~~~~v~v~~~~g~v~a~d~~tG~~~W~~~~~-~~~~~~p~--v~--~~~v~v~~~~g~l~ald~~tG~----------~~ 128 (377)
T TIGR03300 64 AGGKVYAADADGTVVALDAETGKRLWRVDLD-ERLSGGVG--AD--GGLVFVGTEKGEVIALDAEDGK----------EL 128 (377)
T ss_pred ECCEEEEECCCCeEEEEEccCCcEeeeecCC-CCcccceE--Ec--CCEEEEEcCCCEEEEEECCCCc----------Ee
Confidence 3668888889999999999999988776322 21111121 12 5678888899999999998652 12
Q ss_pred eeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCC
Q 004477 141 ALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSS 182 (751)
Q Consensus 141 ~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~ 182 (751)
..... ...+.+.-... + ..++.++.+|.|..||.++++.
T Consensus 129 W~~~~-~~~~~~~p~v~-~-~~v~v~~~~g~l~a~d~~tG~~ 167 (377)
T TIGR03300 129 WRAKL-SSEVLSPPLVA-N-GLVVVRTNDGRLTALDAATGER 167 (377)
T ss_pred eeecc-CceeecCCEEE-C-CEEEEECCCCeEEEEEcCCCce
Confidence 22221 11221111111 3 3455677889999999988764
No 336
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=97.15 E-value=0.077 Score=62.85 Aligned_cols=210 Identities=10% Similarity=0.102 Sum_probs=128.3
Q ss_pred CCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEecccCCcceEEEEEecCCCCcEEEEEECCCcEEEEECC--CC
Q 004477 50 QGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLS--RF 127 (751)
Q Consensus 50 ~~~V~~l~~s~dg~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~Dg~V~vwd~~--~~ 127 (751)
.+.|.++.|..++.-++.+..+|.|.+-|..+..... . ..-...|.+++|+|+ ++.++-...++++.+-+-. --
T Consensus 68 d~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~ei-v-g~vd~GI~aaswS~D--ee~l~liT~~~tll~mT~~f~~i 143 (1265)
T KOG1920|consen 68 DDEIVSVQFLADTNSICVITALGDIILVDPETLELEI-V-GNVDNGISAASWSPD--EELLALITGRQTLLFMTKDFEPI 143 (1265)
T ss_pred CcceEEEEEecccceEEEEecCCcEEEEcccccceee-e-eeccCceEEEeecCC--CcEEEEEeCCcEEEEEeccccch
Confidence 3689999999999999999999999999987654322 1 234678999999999 7888888887777654321 00
Q ss_pred CCCCC-----------CCCCCCCceeec----------------------ccCCceeEEEEecCCCCEEEEE-----eCC
Q 004477 128 SGRGL-----------DDNAITPSALYQ----------------------CHTRRVKKLAVEVGNPHVVWSA-----SED 169 (751)
Q Consensus 128 ~~~~~-----------~~~~~~~~~~~~----------------------~h~~~V~~l~~sp~~~~~l~s~-----s~D 169 (751)
..+.+ .....+.-..|. -|.. =++|.|-- ++.+|++. ..-
T Consensus 144 ~E~~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~-~~~IsWRg-Dg~~fAVs~~~~~~~~ 221 (1265)
T KOG1920|consen 144 AEKPLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDH-KTSISWRG-DGEYFAVSFVESETGT 221 (1265)
T ss_pred hccccccccccccccceecccccceeeecchhhhcccccccccccccchhhccC-CceEEEcc-CCcEEEEEEEeccCCc
Confidence 00000 000001001111 1111 23588876 67777762 223
Q ss_pred CcEEEEecCCCCCCCCCCCCCCccceEEEecccCceecccCCCCCccceEEEEEeCCCCcEEEEE---eCCCeEEEEeCC
Q 004477 170 GTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVG---GSDAFARLYDRR 246 (751)
Q Consensus 170 g~I~iwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sg---s~D~~IriwD~~ 246 (751)
+.|++||-. +..-. . .......-.+++|-|. |.++++- .+|+.|.+|..+
T Consensus 222 RkirV~drE-g~Lns----------------~---------se~~~~l~~~LsWkPs-gs~iA~iq~~~sd~~IvffErN 274 (1265)
T KOG1920|consen 222 RKIRVYDRE-GALNS----------------T---------SEPVEGLQHSLSWKPS-GSLIAAIQCKTSDSDIVFFERN 274 (1265)
T ss_pred eeEEEeccc-chhhc----------------c---------cCcccccccceeecCC-CCeEeeeeecCCCCcEEEEecC
Confidence 799999976 32100 0 0001223357889995 6666664 356789999876
Q ss_pred CCCCccccCCCCCCCCccccccccccccCCccccceEEEEEcCCCCEEEE---EeCCCcEEEEECCC
Q 004477 247 MLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLL---SYSGEHVYLMDVNH 310 (751)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~vt~v~fspdg~~Ll~---~s~d~~I~lwdl~~ 310 (751)
-+.. .++..+ + |. ....|..++|+.++..|++ ......|++|-+.+
T Consensus 275 GL~h-g~f~l~---------~-p~-------de~~ve~L~Wns~sdiLAv~~~~~e~~~v~lwt~~N 323 (1265)
T KOG1920|consen 275 GLRH-GEFVLP---------F-PL-------DEKEVEELAWNSNSDILAVVTSNLENSLVQLWTTGN 323 (1265)
T ss_pred Cccc-cccccC---------C-cc-------cccchheeeecCCCCceeeeecccccceEEEEEecC
Confidence 5431 111000 0 00 0113889999999999988 44456699998877
No 337
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.95 E-value=0.04 Score=62.78 Aligned_cols=170 Identities=19% Similarity=0.260 Sum_probs=107.6
Q ss_pred ceEEEEEecCCCCcEEEEEECCCcEEEEECCCCCCCCCCCCCCCCceeecccCCc-eeEEEEecCCCCEEEEEeCCCc--
Q 004477 95 NVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRR-VKKLAVEVGNPHVVWSASEDGT-- 171 (751)
Q Consensus 95 ~V~~v~fsp~s~~~~l~sgs~Dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~-V~~l~~sp~~~~~l~s~s~Dg~-- 171 (751)
.|.| |++. +..+|.|+.||.|.+.+-.- +.++.++.+... |..+- .-....+|++.++|+.
T Consensus 27 ~isc--~~s~--~~~vvigt~~G~V~~Ln~s~-----------~~~~~fqa~~~siv~~L~-~~~~~~~L~sv~Ed~~~n 90 (933)
T KOG2114|consen 27 AISC--CSSS--TGSVVIGTADGRVVILNSSF-----------QLIRGFQAYEQSIVQFLY-ILNKQNFLFSVGEDEQGN 90 (933)
T ss_pred ceeE--EcCC--CceEEEeeccccEEEecccc-----------eeeehheecchhhhhHhh-cccCceEEEEEeecCCCC
Confidence 4444 4555 67899999999988887653 335777777777 55553 3324468888888765
Q ss_pred ---EEEEecCCCCCCCCCCCCCCccce--EEEecccCceecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCC
Q 004477 172 ---LRQHDFRQGSSCPPAGSSHQECRN--ILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRR 246 (751)
Q Consensus 172 ---I~iwDlr~~~~~~~~~~~~~~~~~--~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~ 246 (751)
|++||+.....- ....|.. .++. ...|....++.+++++.+ -..+|+|-.+|.|..+.-.
T Consensus 91 p~llkiw~lek~~~n-----~sP~c~~~~ri~~---------~~np~~~~p~s~l~Vs~~-l~~Iv~Gf~nG~V~~~~GD 155 (933)
T KOG2114|consen 91 PVLLKIWDLEKVDKN-----NSPQCLYEHRIFT---------IKNPTNPSPASSLAVSED-LKTIVCGFTNGLVICYKGD 155 (933)
T ss_pred ceEEEEecccccCCC-----CCcceeeeeeeec---------cCCCCCCCcceEEEEEcc-ccEEEEEecCcEEEEEcCc
Confidence 899999875421 0011210 1111 012235678889999985 6899999999999998543
Q ss_pred CCCCccccCCCCCCCCccccccccccccCCccccceEEEEEcCCCCEEEEEeCCCcEEEEECCCCC
Q 004477 247 MLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAG 312 (751)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~vt~v~fspdg~~Ll~~s~d~~I~lwdl~~~~ 312 (751)
-.....+ +.- .. .....+||.++|..+++-++-...-..|.+|.+.+..
T Consensus 156 i~RDrgs-----------r~~----~~--~~~~~pITgL~~~~d~~s~lFv~Tt~~V~~y~l~gr~ 204 (933)
T KOG2114|consen 156 ILRDRGS-----------RQD----YS--HRGKEPITGLALRSDGKSVLFVATTEQVMLYSLSGRT 204 (933)
T ss_pred chhcccc-----------cee----ee--ccCCCCceeeEEecCCceeEEEEecceeEEEEecCCC
Confidence 2111100 000 00 0112369999999999984444455689999998644
No 338
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=96.94 E-value=0.11 Score=52.55 Aligned_cols=192 Identities=19% Similarity=0.188 Sum_probs=105.3
Q ss_pred CCCcEEEEeCCCCeEEEEecccC-CcceEEEEEecCCCCcEEEEEECCCcEEEEECCCCCCCCCCCCCCCCceeecccCC
Q 004477 70 DDTHINVWSYSSRKLLHSIETGH-SANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTR 148 (751)
Q Consensus 70 ~Dg~I~IWd~~~~~~~~~l~~~h-~~~V~~v~fsp~s~~~~l~sgs~Dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~ 148 (751)
++|+|..||..+|+.+.....+. .....+. ..+. +..+++++.++.+..||..++ +.+..+.. ..
T Consensus 1 ~~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~-~~~~--~~~v~~~~~~~~l~~~d~~tG----------~~~W~~~~-~~ 66 (238)
T PF13360_consen 1 DDGTLSALDPRTGKELWSYDLGPGIGGPVAT-AVPD--GGRVYVASGDGNLYALDAKTG----------KVLWRFDL-PG 66 (238)
T ss_dssp -TSEEEEEETTTTEEEEEEECSSSCSSEEET-EEEE--TTEEEEEETTSEEEEEETTTS----------EEEEEEEC-SS
T ss_pred CCCEEEEEECCCCCEEEEEECCCCCCCccce-EEEe--CCEEEEEcCCCEEEEEECCCC----------CEEEEeec-cc
Confidence 47899999999999998873321 1222222 2223 467777789999999999865 22333333 22
Q ss_pred ceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCCCCCCCCCCccceEEEec-ccCceecccCCCCCccceEEEEEeCCC
Q 004477 149 RVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDL-RCGAKRSLADPPKQTLSLKSCDISSTR 227 (751)
Q Consensus 149 ~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~~~~v~~i~~sp~~ 227 (751)
.+....... + ..++.++.|+.|+.+|+.+++ ++|.. .... ............+.
T Consensus 67 ~~~~~~~~~-~-~~v~v~~~~~~l~~~d~~tG~--------------~~W~~~~~~~------~~~~~~~~~~~~~~--- 121 (238)
T PF13360_consen 67 PISGAPVVD-G-GRVYVGTSDGSLYALDAKTGK--------------VLWSIYLTSS------PPAGVRSSSSPAVD--- 121 (238)
T ss_dssp CGGSGEEEE-T-TEEEEEETTSEEEEEETTTSC--------------EEEEEEE-SS------CTCSTB--SEEEEE---
T ss_pred cccceeeec-c-cccccccceeeeEecccCCcc--------------eeeeeccccc------cccccccccCceEe---
Confidence 221111222 3 345566688899999999886 23431 1110 00001111222332
Q ss_pred CcEEEEEeCCCeEEEEeCCCCCCccccCCCCCCCCccccccccccccCCccccceEEEEEcCCCCEEEEEeCCCcEEEEE
Q 004477 228 PHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMD 307 (751)
Q Consensus 228 ~~~l~sgs~D~~IriwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~vt~v~fspdg~~Ll~~s~d~~I~lwd 307 (751)
+..++++..++.|..+|+++++.+........+... . . .....+..-....++ .++++..++.+.-+|
T Consensus 122 ~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~-~------~----~~~~~~~~~~~~~~~-~v~~~~~~g~~~~~d 189 (238)
T PF13360_consen 122 GDRLYVGTSSGKLVALDPKTGKLLWKYPVGEPRGSS-P------I----SSFSDINGSPVISDG-RVYVSSGDGRVVAVD 189 (238)
T ss_dssp TTEEEEEETCSEEEEEETTTTEEEEEEESSTT-SS---------E----EEETTEEEEEECCTT-EEEEECCTSSEEEEE
T ss_pred cCEEEEEeccCcEEEEecCCCcEEEEeecCCCCCCc-c------e----eeecccccceEEECC-EEEEEcCCCeEEEEE
Confidence 468888888999999999998865544321111000 0 0 000012222233344 777777777544449
Q ss_pred CCCCC
Q 004477 308 VNHAG 312 (751)
Q Consensus 308 l~~~~ 312 (751)
+.+++
T Consensus 190 ~~tg~ 194 (238)
T PF13360_consen 190 LATGE 194 (238)
T ss_dssp TTTTE
T ss_pred CCCCC
Confidence 99864
No 339
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=96.85 E-value=0.072 Score=62.27 Aligned_cols=212 Identities=15% Similarity=0.210 Sum_probs=120.7
Q ss_pred CEEEE-EeCCCcEEEEeCCCCeEEEEecccCCcceEEEEEecCCC-----CcEEEEEECCCcEEEEECCCCCCCCCCCCC
Q 004477 63 SLLIS-GSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETS-----DELVVSGAGDAEVRLFNLSRFSGRGLDDNA 136 (751)
Q Consensus 63 ~~LaS-gs~Dg~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~s~-----~~~l~sgs~Dg~V~vwd~~~~~~~~~~~~~ 136 (751)
++|+. ......|.-.|+..|+.+.........+|.. |.|++. +.-.+.|-.+..+..||.+....+.+.
T Consensus 494 ~mil~~~~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~--~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~--- 568 (794)
T PF08553_consen 494 NMILLDPNNPNKLYKMDLERGKVVEEWKVHDDIPVVD--IAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVD--- 568 (794)
T ss_pred ceEeecCCCCCceEEEecCCCcEEEEeecCCCcceeE--ecccccccccCCCceEEEECCCceEEeccCCCCCceee---
Confidence 34343 3456778888999999999884333333444 444321 234556677889999999964211110
Q ss_pred CCCceeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCCCCCCCCCCccceEEEecccCceecccCCCCCcc
Q 004477 137 ITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTL 216 (751)
Q Consensus 137 ~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 216 (751)
...+.+ .......|++.+. + -.||.|+.+|.||+|| +.+.. .....|+-..
T Consensus 569 -~~~k~Y-~~~~~Fs~~aTt~-~-G~iavgs~~G~IRLyd-~~g~~------------------------AKT~lp~lG~ 619 (794)
T PF08553_consen 569 -SQSKQY-SSKNNFSCFATTE-D-GYIAVGSNKGDIRLYD-RLGKR------------------------AKTALPGLGD 619 (794)
T ss_pred -cccccc-ccCCCceEEEecC-C-ceEEEEeCCCcEEeec-ccchh------------------------hhhcCCCCCC
Confidence 001111 2344466777665 3 4788999999999999 33221 1222344567
Q ss_pred ceEEEEEeCCCCcEEEEEeCCCeEEEEeCCC--CCCc------cccCCCCCCCCccccccccccccC---CccccceEEE
Q 004477 217 SLKSCDISSTRPHLLLVGGSDAFARLYDRRM--LPPL------TSCQKRMSPPPCVNYFCPMHLSEH---GRSSLHLTHV 285 (751)
Q Consensus 217 ~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~--~~~~------~~~~~~~~~~~~~~~~~~~~~~~~---g~~~~~vt~v 285 (751)
+|..|+++.+ |++|++.+ +.++.|++..- ++.. ..+.....|.+-...+.|.|.... +......+..
T Consensus 620 pI~~iDvt~D-GkwilaTc-~tyLlLi~t~~~~g~~~g~~GF~~~~~~~~kp~Pr~L~L~pe~~~~~~~~~~~~~~Ft~a 697 (794)
T PF08553_consen 620 PIIGIDVTAD-GKWILATC-KTYLLLIDTLIKDGKNSGKLGFEKSFGKDKKPQPRRLQLKPEHVAYMQHETGKPISFTPA 697 (794)
T ss_pred CeeEEEecCC-CcEEEEee-cceEEEEEEeeecCCccCccccccccCccCCCCCeEEecCHHHHHHHHhccCCCceeece
Confidence 8999999995 77776554 56788888632 1110 112222233333334445443221 1112235666
Q ss_pred EEcC--C-CCEEEEEeCCCcEEEEECCC
Q 004477 286 TFSP--N-GEEVLLSYSGEHVYLMDVNH 310 (751)
Q Consensus 286 ~fsp--d-g~~Ll~~s~d~~I~lwdl~~ 310 (751)
.|+- + ....++++.+..+.+||+..
T Consensus 698 ~Fnt~~~~~E~~IvtstG~f~v~Wnf~k 725 (794)
T PF08553_consen 698 KFNTGIGKQETSIVTSTGPFVVTWNFKK 725 (794)
T ss_pred EEecCCCCccceEEEeccCEEEEEEHHH
Confidence 7763 1 23456666677999999875
No 340
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=96.76 E-value=0.0037 Score=41.85 Aligned_cols=38 Identities=26% Similarity=0.640 Sum_probs=32.8
Q ss_pred eEEEEecccCCcceEEEEEecCCCCcEEEEEECCCcEEEEE
Q 004477 83 KLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFN 123 (751)
Q Consensus 83 ~~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~Dg~V~vwd 123 (751)
..+..+ ..|...|.++.|.|. +.++++++.|+.+++|+
T Consensus 3 ~~~~~~-~~~~~~i~~~~~~~~--~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 3 ELLKTL-KGHTGPVTSVAFSPD--GKYLASASDDGTIKLWD 40 (40)
T ss_pred EEEEEE-EecCCceeEEEECCC--CCEEEEecCCCeEEEcC
Confidence 455566 678999999999998 68999999999999996
No 341
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=96.66 E-value=0.088 Score=45.63 Aligned_cols=104 Identities=21% Similarity=0.164 Sum_probs=69.9
Q ss_pred ceEEEEEecCCC--CcEEEEEECCCcEEEEECCCCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCCcE
Q 004477 95 NVFCTKFVPETS--DELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTL 172 (751)
Q Consensus 95 ~V~~v~fsp~s~--~~~l~sgs~Dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I 172 (751)
+|++++++.-.+ .+.|+.|+.|..||||+-. +.+..+. -.+.|.+++-.. +..|+.+-.+|+|
T Consensus 1 ~V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~------------e~~~Ei~-e~~~v~~L~~~~--~~~F~Y~l~NGTV 65 (111)
T PF14783_consen 1 NVTALCLFDFDGDGENELLVGSDDFEIRVFKGD------------EIVAEIT-ETDKVTSLCSLG--GGRFAYALANGTV 65 (111)
T ss_pred CeeEEEEEecCCCCcceEEEecCCcEEEEEeCC------------cEEEEEe-cccceEEEEEcC--CCEEEEEecCCEE
Confidence 477788776432 2689999999999999877 3355554 356677777664 3678899999999
Q ss_pred EEEecCCCCCCCCCCCCCCccceEEEecccCceecccCCCCCccceEEEEE---eCCCCcEEEEEeCCCeEE
Q 004477 173 RQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDI---SSTRPHLLLVGGSDAFAR 241 (751)
Q Consensus 173 ~iwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~i~~---sp~~~~~l~sgs~D~~Ir 241 (751)
-+|+-.. .+|..++ +..++++.+ +.++..-|++|-.+|.|-
T Consensus 66 GvY~~~~----------------RlWRiKS------------K~~~~~~~~~D~~gdG~~eLI~GwsnGkve 109 (111)
T PF14783_consen 66 GVYDRSQ----------------RLWRIKS------------KNQVTSMAFYDINGDGVPELIVGWSNGKVE 109 (111)
T ss_pred EEEeCcc----------------eeeeecc------------CCCeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence 9997532 2333322 122444444 444445799999988874
No 342
>PRK02888 nitrous-oxide reductase; Validated
Probab=96.59 E-value=0.043 Score=61.85 Aligned_cols=165 Identities=7% Similarity=-0.023 Sum_probs=95.2
Q ss_pred EECCCCCEEEEE-eCCCcEEEEeCCCCeEEEEecccCCcceEEEEEecCCCCcEEEEEEC--------------------
Q 004477 57 SWNSKGSLLISG-SDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAG-------------------- 115 (751)
Q Consensus 57 ~~s~dg~~LaSg-s~Dg~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~-------------------- 115 (751)
-++|||+.|... -..+.+.+.|..+.+...++..+ ++..-++++|+ |.++++.+.
T Consensus 199 PlpnDGk~l~~~~ey~~~vSvID~etmeV~~qV~Vd--gnpd~v~~spd--Gk~afvTsyNsE~G~tl~em~a~e~d~~v 274 (635)
T PRK02888 199 PLPNDGKDLDDPKKYRSLFTAVDAETMEVAWQVMVD--GNLDNVDTDYD--GKYAFSTCYNSEEGVTLAEMMAAERDWVV 274 (635)
T ss_pred ccCCCCCEeecccceeEEEEEEECccceEEEEEEeC--CCcccceECCC--CCEEEEeccCcccCcceeeeccccCceEE
Confidence 345677655433 23566778888887777776332 34566777887 666665541
Q ss_pred --------------------CCcEEEEECCCCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCCcEEEE
Q 004477 116 --------------------DAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQH 175 (751)
Q Consensus 116 --------------------Dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iw 175 (751)
++.|.|.|..+..... .+.+..+ .-......++++|++..+++++..+.+|.+.
T Consensus 275 vfni~~iea~vkdGK~~~V~gn~V~VID~~t~~~~~-----~~v~~yI-PVGKsPHGV~vSPDGkylyVanklS~tVSVI 348 (635)
T PRK02888 275 VFNIARIEEAVKAGKFKTIGGSKVPVVDGRKAANAG-----SALTRYV-PVPKNPHGVNTSPDGKYFIANGKLSPTVTVI 348 (635)
T ss_pred EEchHHHHHhhhCCCEEEECCCEEEEEECCccccCC-----cceEEEE-ECCCCccceEECCCCCEEEEeCCCCCcEEEE
Confidence 2334555544300000 0112222 2345677899999776677777889999999
Q ss_pred ecCCCCCCCCCCCCCCccce-EEEecccCceecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCC
Q 004477 176 DFRQGSSCPPAGSSHQECRN-ILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRM 247 (751)
Q Consensus 176 Dlr~~~~~~~~~~~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~ 247 (751)
|+.+.+.... ...+.+. ++-... -...-...+|.++ ++.+.+-..|..|-.|++..
T Consensus 349 Dv~k~k~~~~---~~~~~~~~vvaeve------------vGlGPLHTaFDg~-G~aytslf~dsqv~kwn~~~ 405 (635)
T PRK02888 349 DVRKLDDLFD---GKIKPRDAVVAEPE------------LGLGPLHTAFDGR-GNAYTTLFLDSQIVKWNIEA 405 (635)
T ss_pred EChhhhhhhh---ccCCccceEEEeec------------cCCCcceEEECCC-CCEEEeEeecceeEEEehHH
Confidence 9988653210 0000011 111111 1112234578884 68888889999999999875
No 343
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=96.58 E-value=0.01 Score=65.37 Aligned_cols=74 Identities=20% Similarity=0.339 Sum_probs=65.7
Q ss_pred CCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEecccCCcceE-EEEEecCCCCcEEEEEECCCcEEEEECCCC
Q 004477 50 QGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVF-CTKFVPETSDELVVSGAGDAEVRLFNLSRF 127 (751)
Q Consensus 50 ~~~V~~l~~s~dg~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~V~-~v~fsp~s~~~~l~sgs~Dg~V~vwd~~~~ 127 (751)
.-.|..+.|+|.-.++|.+..+|.|.+.-+. .+.+.++ .-|..+++ +++|.|+ |++||.|-.||+|++.|+.++
T Consensus 20 ~~~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwti-p~p~~~v~~sL~W~~D--GkllaVg~kdG~I~L~Dve~~ 94 (665)
T KOG4640|consen 20 PINIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTI-PIPGENVTASLCWRPD--GKLLAVGFKDGTIRLHDVEKG 94 (665)
T ss_pred ccceEEEEEcCccchhheeccCCcEEEEEec-cceeEec-cCCCCccceeeeecCC--CCEEEEEecCCeEEEEEccCC
Confidence 3467789999999999999999999999987 7788888 45666777 9999999 899999999999999999975
No 344
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=96.58 E-value=0.32 Score=48.27 Aligned_cols=61 Identities=10% Similarity=0.120 Sum_probs=46.3
Q ss_pred CCEEEEEeCCCcEEEEeCCCCeEEEEecccCCcceEEEE-EecCCCCcEEEEEECCCcEEEEECCC
Q 004477 62 GSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTK-FVPETSDELVVSGAGDAEVRLFNLSR 126 (751)
Q Consensus 62 g~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~V~~v~-fsp~s~~~~l~sgs~Dg~V~vwd~~~ 126 (751)
|++++.|...|.+.+.+.++|.+...+... +.|-+-+ ..++ +.+|..|+.|++.+.-|..+
T Consensus 63 gdfVV~GCy~g~lYfl~~~tGs~~w~f~~~--~~vk~~a~~d~~--~glIycgshd~~~yalD~~~ 124 (354)
T KOG4649|consen 63 GDFVVLGCYSGGLYFLCVKTGSQIWNFVIL--ETVKVRAQCDFD--GGLIYCGSHDGNFYALDPKT 124 (354)
T ss_pred CCEEEEEEccCcEEEEEecchhheeeeeeh--hhhccceEEcCC--CceEEEecCCCcEEEecccc
Confidence 678899999999999999999887776322 2233322 3344 68999999999999888875
No 345
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=96.54 E-value=0.14 Score=44.47 Aligned_cols=101 Identities=18% Similarity=0.178 Sum_probs=69.3
Q ss_pred EEEEEECC---CC-CEEEEEeCCCcEEEEeCCCCeEEEEecccCCcceEEEEEecCCCCcEEEEEECCCcEEEEECCCCC
Q 004477 53 VNAISWNS---KG-SLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFS 128 (751)
Q Consensus 53 V~~l~~s~---dg-~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~Dg~V~vwd~~~~~ 128 (751)
|++|++.. +| +.|+.||.|..|+||+-. ..+..+ .-...|.++.-... ..|+.+-.+|+|-||+-...
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~--e~~~Ei--~e~~~v~~L~~~~~---~~F~Y~l~NGTVGvY~~~~R- 73 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGD--EIVAEI--TETDKVTSLCSLGG---GRFAYALANGTVGVYDRSQR- 73 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeCC--cEEEEE--ecccceEEEEEcCC---CEEEEEecCCEEEEEeCcce-
Confidence 67777765 33 589999999999999844 566666 24566888877765 57888999999999987632
Q ss_pred CCCCCCCCCCCceeecccCCceeEEEEecCC---CCEEEEEeCCCcEE
Q 004477 129 GRGLDDNAITPSALYQCHTRRVKKLAVEVGN---PHVVWSASEDGTLR 173 (751)
Q Consensus 129 ~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~---~~~l~s~s~Dg~I~ 173 (751)
+...+. +..+.++++..-+ -.-|++|=.+|.|-
T Consensus 74 -----------lWRiKS-K~~~~~~~~~D~~gdG~~eLI~GwsnGkve 109 (111)
T PF14783_consen 74 -----------LWRIKS-KNQVTSMAFYDINGDGVPELIVGWSNGKVE 109 (111)
T ss_pred -----------eeeecc-CCCeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence 222332 3336677665422 23677888888763
No 346
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=96.48 E-value=0.012 Score=66.41 Aligned_cols=110 Identities=10% Similarity=0.192 Sum_probs=83.3
Q ss_pred EEEEECCCCCEEEEEe----CCCcEEEEeCCCCeEEEEecccCCcceEEEEEecCCCCcEEEEEECCCcEEEEECCCCCC
Q 004477 54 NAISWNSKGSLLISGS----DDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSG 129 (751)
Q Consensus 54 ~~l~~s~dg~~LaSgs----~Dg~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~Dg~V~vwd~~~~~~ 129 (751)
+-..|+|...+||.++ .-|.|.|+- ++|.+...+ ...-.+++++|+|. .-.|++|-.-|.+.+|...+.
T Consensus 19 ti~SWHPsePlfAVA~fS~er~GSVtIfa-dtGEPqr~V--t~P~hatSLCWHpe--~~vLa~gwe~g~~~v~~~~~~-- 91 (1416)
T KOG3617|consen 19 TISSWHPSEPLFAVASFSPERGGSVTIFA-DTGEPQRDV--TYPVHATSLCWHPE--EFVLAQGWEMGVSDVQKTNTT-- 91 (1416)
T ss_pred cccccCCCCceeEEEEecCCCCceEEEEe-cCCCCCccc--ccceehhhhccChH--HHHHhhccccceeEEEecCCc--
Confidence 4467999999999886 467788875 345543322 12234678999999 567888888899999998763
Q ss_pred CCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCC
Q 004477 130 RGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQ 179 (751)
Q Consensus 130 ~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~ 179 (751)
+.-.....|..+|..+.|++ +|..++|+..-|.|.+|....
T Consensus 92 --------e~htv~~th~a~i~~l~wS~-~G~~l~t~d~~g~v~lwr~d~ 132 (1416)
T KOG3617|consen 92 --------ETHTVVETHPAPIQGLDWSH-DGTVLMTLDNPGSVHLWRYDV 132 (1416)
T ss_pred --------eeeeeccCCCCCceeEEecC-CCCeEEEcCCCceeEEEEeee
Confidence 22334457999999999999 678889999999999998764
No 347
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=96.39 E-value=1.4 Score=48.58 Aligned_cols=65 Identities=25% Similarity=0.334 Sum_probs=45.7
Q ss_pred EEECCCCCEEEEEeCC----------C-cEEEEeCCCCeEEEEecccCCcceEEEEEecCCCCcEEEEEECCCcEEEEEC
Q 004477 56 ISWNSKGSLLISGSDD----------T-HINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNL 124 (751)
Q Consensus 56 l~~s~dg~~LaSgs~D----------g-~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~Dg~V~vwd~ 124 (751)
++.+|.|-.+|...++ . .|.||+.. |+++.++.-.+ +.|.++.|..+ ..|+.-..||+++++|+
T Consensus 34 va~a~~gGpIAi~~d~~k~~~~~~~~p~~I~iys~s-G~ll~~i~w~~-~~iv~~~wt~~---e~LvvV~~dG~v~vy~~ 108 (410)
T PF04841_consen 34 VAVAPYGGPIAIIRDESKLVPVGSAKPNSIQIYSSS-GKLLSSIPWDS-GRIVGMGWTDD---EELVVVQSDGTVRVYDL 108 (410)
T ss_pred EEEcCCCceEEEEecCcccccccCCCCcEEEEECCC-CCEeEEEEECC-CCEEEEEECCC---CeEEEEEcCCEEEEEeC
Confidence 4555655555555443 2 48999965 66777663333 89999999886 45556678999999998
Q ss_pred C
Q 004477 125 S 125 (751)
Q Consensus 125 ~ 125 (751)
.
T Consensus 109 ~ 109 (410)
T PF04841_consen 109 F 109 (410)
T ss_pred C
Confidence 6
No 348
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.32 E-value=0.69 Score=47.07 Aligned_cols=184 Identities=14% Similarity=0.147 Sum_probs=118.0
Q ss_pred eccCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEecccCCcceEEEEEecCCCCcEEEEEECCCcEEEEECC
Q 004477 46 LEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLS 125 (751)
Q Consensus 46 L~gH~~~V~~l~~s~dg~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~Dg~V~vwd~~ 125 (751)
+.|-+..|.+|.|+|+.+.|.+-.....-.||=..+|..+.++....-...-.|.+.-+ |+++++--.++.+.++.+.
T Consensus 81 i~g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~--n~fvi~dER~~~l~~~~vd 158 (316)
T COG3204 81 ILGETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGG--NQFVIVDERDRALYLFTVD 158 (316)
T ss_pred cccccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccccCChhHeEEecC--CEEEEEehhcceEEEEEEc
Confidence 45666679999999999999888888888998888899998884433444566777776 7888888888999988887
Q ss_pred CCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCCCCCCCCCCccceEEEecccCce
Q 004477 126 RFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAK 205 (751)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~ 205 (751)
............-++......+...-.++|.|.+ +.|+.+-+-.-+.||.+......... ....+...
T Consensus 159 ~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~-~~l~~aKEr~P~~I~~~~~~~~~l~~--------~~~~~~~~--- 226 (316)
T COG3204 159 ADTTVISAKVQKIPLGTTNKKNKGFEGLAWDPVD-HRLFVAKERNPIGIFEVTQSPSSLSV--------HASLDPTA--- 226 (316)
T ss_pred CCccEEeccceEEeccccCCCCcCceeeecCCCC-ceEEEEEccCCcEEEEEecCCccccc--------ccccCccc---
Confidence 5422111000001112222225556789999955 56667777777888776643311000 00000000
Q ss_pred ecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCC
Q 004477 206 RSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRM 247 (751)
Q Consensus 206 ~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~ 247 (751)
..+-....|.++.|++..+++++-+..++.+.-.|+.-
T Consensus 227 ----~~~~f~~DvSgl~~~~~~~~LLVLS~ESr~l~Evd~~G 264 (316)
T COG3204 227 ----DRDLFVLDVSGLEFNAITNSLLVLSDESRRLLEVDLSG 264 (316)
T ss_pred ----ccceEeeccccceecCCCCcEEEEecCCceEEEEecCC
Confidence 00001235778889988788888888888888888753
No 349
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=96.14 E-value=0.2 Score=54.73 Aligned_cols=227 Identities=15% Similarity=0.161 Sum_probs=115.2
Q ss_pred hhhhccccccEEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEec-c------cCCcceEEEEEec---
Q 004477 34 SSLVRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIE-T------GHSANVFCTKFVP--- 103 (751)
Q Consensus 34 ~~~i~~~~~~~~L~gH~~~V~~l~~s~dg~~LaSgs~Dg~I~IWd~~~~~~~~~l~-~------~h~~~V~~v~fsp--- 103 (751)
..+.+.+.+..-++...+.|++++.|. =-++|.|..+|.+.|.|+.....+..-. . .....|+++.|..
T Consensus 70 ~~~~~gf~P~~l~~~~~g~vtal~~S~-iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~ 148 (395)
T PF08596_consen 70 PSLKEGFLPLTLLDAKQGPVTALKNSD-IGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTL 148 (395)
T ss_dssp TT-SEEEEEEEEE---S-SEEEEEE-B-TSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-
T ss_pred cccccccCchhheeccCCcEeEEecCC-CcEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEec
Confidence 344556788888888899999999984 4499999999999999997766665421 1 2345688898873
Q ss_pred CCCC---cEEEEEECCCcEEEEECCC-CCCCCCCCCCCCCceeecccCCceeEEE-EecCC-------------------
Q 004477 104 ETSD---ELVVSGAGDAEVRLFNLSR-FSGRGLDDNAITPSALYQCHTRRVKKLA-VEVGN------------------- 159 (751)
Q Consensus 104 ~s~~---~~l~sgs~Dg~V~vwd~~~-~~~~~~~~~~~~~~~~~~~h~~~V~~l~-~sp~~------------------- 159 (751)
..++ -.++.|...|.+.+|.+.- ..+... .+.......+.++|..|. |+.+.
T Consensus 149 ~~D~ySSi~L~vGTn~G~v~~fkIlp~~~g~f~----v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~ 224 (395)
T PF08596_consen 149 GGDGYSSICLLVGTNSGNVLTFKILPSSNGRFS----VQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGIS 224 (395)
T ss_dssp TTSSSEEEEEEEEETTSEEEEEEEEE-GGG-EE----EEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT--
T ss_pred CCCcccceEEEEEeCCCCEEEEEEecCCCCceE----EEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCC
Confidence 2112 4678888999999998862 111100 011112224556666554 32111
Q ss_pred -CCEEEEEeCCCcEEEEecCCCCCCCCCCCCCCccceEEEecccCceecccCCCCCccceEEEEEe----CCCCcEEEEE
Q 004477 160 -PHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDIS----STRPHLLLVG 234 (751)
Q Consensus 160 -~~~l~s~s~Dg~I~iwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~i~~s----p~~~~~l~sg 234 (751)
+.+++. ..+..||++..-+.+.. ...+ ........+.+- ...+..|++-
T Consensus 225 i~g~vVv-vSe~~irv~~~~~~k~~-----------~K~~--------------~~~~~~~~~~vv~~~~~~~~~~Lv~l 278 (395)
T PF08596_consen 225 IPGYVVV-VSESDIRVFKPPKSKGA-----------HKSF--------------DDPFLCSSASVVPTISRNGGYCLVCL 278 (395)
T ss_dssp --EEEEE-E-SSEEEEE-TT---EE-----------EEE---------------SS-EEEEEEEEEEEE-EEEEEEEEEE
T ss_pred cCcEEEE-EcccceEEEeCCCCccc-----------ceee--------------ccccccceEEEEeecccCCceEEEEE
Confidence 123333 33567888776654421 1111 011222233332 1135678888
Q ss_pred eCCCeEEEEeCCCCCCccccCCCCCCCCccccccccccccCCccccceEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 004477 235 GSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVN 309 (751)
Q Consensus 235 s~D~~IriwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~vt~v~fspdg~~Ll~~s~d~~I~lwdl~ 309 (751)
..+|.|++|.+-.++++....... .. ... .+....|+++|..++..+.. .+.+|.+-
T Consensus 279 ~~~G~i~i~SLP~Lkei~~~~l~~------------~~----d~~-~~~~ssis~~Gdi~~~~gps-E~~l~sv~ 335 (395)
T PF08596_consen 279 FNNGSIRIYSLPSLKEIKSVSLPP------------PL----DSR-RLSSSSISRNGDIFYWTGPS-EIQLFSVW 335 (395)
T ss_dssp ETTSEEEEEETTT--EEEEEE-SS-------------------HH-HHTT-EE-TTS-EEEE-SSS-EEEEEEEE
T ss_pred ECCCcEEEEECCCchHhhcccCCC------------cc----ccc-cccccEECCCCCEEEEeCcc-cEEEEEEE
Confidence 999999999998887665432110 00 000 13456779999977666543 44444433
No 350
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=96.13 E-value=0.9 Score=49.68 Aligned_cols=204 Identities=17% Similarity=0.200 Sum_probs=127.9
Q ss_pred cEEEEEECCCCC-EEEEEeCCCcEEEEeCCCCeEEEEecccCCcceEEEEEecCCCCcEEEEE-E--CCCcEEEEECCCC
Q 004477 52 CVNAISWNSKGS-LLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSG-A--GDAEVRLFNLSRF 127 (751)
Q Consensus 52 ~V~~l~~s~dg~-~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~s~~~~l~sg-s--~Dg~V~vwd~~~~ 127 (751)
.-+.++.++.+. ..++...+..|.+.|..+.+....+..+. ....+++.|+ +..+..+ . .+++|.+.|-.+.
T Consensus 75 ~p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~~vG~--~P~~~~~~~~--~~~vYV~n~~~~~~~vsvid~~t~ 150 (381)
T COG3391 75 YPAGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGSIPVGL--GPVGLAVDPD--GKYVYVANAGNGNNTVSVIDAATN 150 (381)
T ss_pred cccceeeCCCCCeEEEecCCCCeEEEEcCcccceeeEeeecc--CCceEEECCC--CCEEEEEecccCCceEEEEeCCCC
Confidence 345678888887 56666667899999988888887775554 6788999999 5555444 4 3678888877753
Q ss_pred CCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCCCCCCCCCCccceEEEecccCceec
Q 004477 128 SGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRS 207 (751)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 207 (751)
..+.....-..+ ..+++.|++...+++-..+++|.+.|........ ... +.
T Consensus 151 ----------~~~~~~~vG~~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~--~~~-------------~~--- 201 (381)
T COG3391 151 ----------KVTATIPVGNTP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVR--GSV-------------GS--- 201 (381)
T ss_pred ----------eEEEEEecCCCc-ceEEECCCCCeEEEEecCCCeEEEEeCCCcceec--ccc-------------cc---
Confidence 223332222233 7899999665566666789999999976654210 000 00
Q ss_pred ccCCCCCccceEEEEEeCCCCcEEEEEeCC--CeEEEEeCCCCCCccccCCCCCCCCccccccccccccCCccccceEEE
Q 004477 208 LADPPKQTLSLKSCDISSTRPHLLLVGGSD--AFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHV 285 (751)
Q Consensus 208 ~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D--~~IriwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~vt~v 285 (751)
.-.....-..+.++|++.+..++-..+ +.+...|..+....... . + . ... ....+
T Consensus 202 ---~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v~~~~------------~-~---~---~~~-~~~~v 258 (381)
T COG3391 202 ---LVGVGTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATGNVTATD------------L-P---V---GSG-APRGV 258 (381)
T ss_pred ---ccccCCCCceEEECCCCCEEEEEeccCCCceEEEEeCCCceEEEec------------c-c---c---ccC-CCCce
Confidence 000112234578888644344444333 58888888875432210 0 0 0 001 14568
Q ss_pred EEcCCCCEEEEEeC-CCcEEEEECCCC
Q 004477 286 TFSPNGEEVLLSYS-GEHVYLMDVNHA 311 (751)
Q Consensus 286 ~fspdg~~Ll~~s~-d~~I~lwdl~~~ 311 (751)
.++|+|+++.+... .+.+.+.|..+.
T Consensus 259 ~~~p~g~~~yv~~~~~~~V~vid~~~~ 285 (381)
T COG3391 259 AVDPAGKAAYVANSQGGTVSVIDGATD 285 (381)
T ss_pred eECCCCCEEEEEecCCCeEEEEeCCCC
Confidence 99999999888855 589999998874
No 351
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=96.06 E-value=0.092 Score=59.64 Aligned_cols=71 Identities=13% Similarity=0.258 Sum_probs=62.3
Q ss_pred EEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEecccCCcceEEEEEecCCCCcEEEEEECCCcEEEEECCC
Q 004477 53 VNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSR 126 (751)
Q Consensus 53 V~~l~~s~dg~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~Dg~V~vwd~~~ 126 (751)
+++++|+|..-.||+|-.-|.+.+|...+.+ .+++...|+.+|..+.|+|+ |..++|+..=|.|.+|....
T Consensus 62 atSLCWHpe~~vLa~gwe~g~~~v~~~~~~e-~htv~~th~a~i~~l~wS~~--G~~l~t~d~~g~v~lwr~d~ 132 (1416)
T KOG3617|consen 62 ATSLCWHPEEFVLAQGWEMGVSDVQKTNTTE-THTVVETHPAPIQGLDWSHD--GTVLMTLDNPGSVHLWRYDV 132 (1416)
T ss_pred hhhhccChHHHHHhhccccceeEEEecCCce-eeeeccCCCCCceeEEecCC--CCeEEEcCCCceeEEEEeee
Confidence 5579999999999999999999999977544 45555789999999999999 89999999999999998873
No 352
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=95.96 E-value=0.39 Score=56.32 Aligned_cols=133 Identities=14% Similarity=0.128 Sum_probs=88.2
Q ss_pred ccchhhhccccccEEeccCCCc-EEEEEECC-----CCCEEEEEeCCCcEEEEeCCCC--eEEEE-ec-ccCCcceEEEE
Q 004477 31 QMHSSLVRRLSQERELEGHQGC-VNAISWNS-----KGSLLISGSDDTHINVWSYSSR--KLLHS-IE-TGHSANVFCTK 100 (751)
Q Consensus 31 ~~~~~~i~~~~~~~~L~gH~~~-V~~l~~s~-----dg~~LaSgs~Dg~I~IWd~~~~--~~~~~-l~-~~h~~~V~~v~ 100 (751)
+++...+.+.+.+.+.+-|... |..++=.. +......|=.+..|..||+.-. +++.. .. -.......|++
T Consensus 505 ~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~k~Y~~~~~Fs~~a 584 (794)
T PF08553_consen 505 KLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQSKQYSSKNNFSCFA 584 (794)
T ss_pred ceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeeccccccccCCCceEEE
Confidence 4555678889999999988755 55554321 1334566777889999998642 23321 10 12344566666
Q ss_pred EecCCCCcEEEEEECCCcEEEEECCCCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEecC
Q 004477 101 FVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFR 178 (751)
Q Consensus 101 fsp~s~~~~l~sgs~Dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr 178 (751)
-..+ -+||.|+.+|.||+||-.. . .....+.+-..+|..|..+. +|++++. ..+..|.++++.
T Consensus 585 Tt~~---G~iavgs~~G~IRLyd~~g---~-------~AKT~lp~lG~pI~~iDvt~-DGkwila-Tc~tyLlLi~t~ 647 (794)
T PF08553_consen 585 TTED---GYIAVGSNKGDIRLYDRLG---K-------RAKTALPGLGDPIIGIDVTA-DGKWILA-TCKTYLLLIDTL 647 (794)
T ss_pred ecCC---ceEEEEeCCCcEEeecccc---h-------hhhhcCCCCCCCeeEEEecC-CCcEEEE-eecceEEEEEEe
Confidence 5554 5899999999999999432 1 33556677789999999999 5555533 335678888864
No 353
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=95.90 E-value=0.26 Score=58.68 Aligned_cols=155 Identities=14% Similarity=0.133 Sum_probs=93.7
Q ss_pred EEEEECCCCCEEEEE-----eCCCcEEEEeCCCCeEEEEecccCCcceEEEEEecCCCCcEEEEEE---CCCcEEEEECC
Q 004477 54 NAISWNSKGSLLISG-----SDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGA---GDAEVRLFNLS 125 (751)
Q Consensus 54 ~~l~~s~dg~~LaSg-----s~Dg~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs---~Dg~V~vwd~~ 125 (751)
..|.|--||+++|+. ..-++|+|||-+ |.+-..- ..-.+-=.+++|-|. |.++++-. .|+.|.++.-+
T Consensus 199 ~~IsWRgDg~~fAVs~~~~~~~~RkirV~drE-g~Lns~s-e~~~~l~~~LsWkPs--gs~iA~iq~~~sd~~IvffErN 274 (1265)
T KOG1920|consen 199 TSISWRGDGEYFAVSFVESETGTRKIRVYDRE-GALNSTS-EPVEGLQHSLSWKPS--GSLIAAIQCKTSDSDIVFFERN 274 (1265)
T ss_pred ceEEEccCCcEEEEEEEeccCCceeEEEeccc-chhhccc-CcccccccceeecCC--CCeEeeeeecCCCCcEEEEecC
Confidence 368999999999983 333899999977 4433222 233344568999997 88888753 45678888766
Q ss_pred CCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEE---EeCCCcEEEEecCCCCCCCCCCCCCCccceEEEeccc
Q 004477 126 RFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWS---ASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRC 202 (751)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s---~s~Dg~I~iwDlr~~~~~~~~~~~~~~~~~~l~~~~~ 202 (751)
..... .....+......|..++|+. ++.+|+. ......|++|-+...+ |.++.
T Consensus 275 GL~hg-------~f~l~~p~de~~ve~L~Wns-~sdiLAv~~~~~e~~~v~lwt~~Nyh----------------WYLKq 330 (1265)
T KOG1920|consen 275 GLRHG-------EFVLPFPLDEKEVEELAWNS-NSDILAVVTSNLENSLVQLWTTGNYH----------------WYLKQ 330 (1265)
T ss_pred Ccccc-------ccccCCcccccchheeeecC-CCCceeeeecccccceEEEEEecCeE----------------EEEEE
Confidence 32110 11112223344489999998 6677776 4555559999876543 22111
Q ss_pred CceecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeC
Q 004477 203 GAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDR 245 (751)
Q Consensus 203 ~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~ 245 (751)
. +.... .. -+.|+|..+..+.+-..+|.+.++|.
T Consensus 331 ~----l~~~~---~~--~~~W~p~~~~~L~v~~~sG~~~v~~~ 364 (1265)
T KOG1920|consen 331 E----LQFSQ---KA--LLMWDPVTEKTLHVLRESGQRLVRDF 364 (1265)
T ss_pred E----Eeccc---cc--cccccCCCceeEEEEecCCcEEEEEE
Confidence 1 11110 00 16677766666666556676666665
No 354
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=95.89 E-value=0.34 Score=53.38 Aligned_cols=181 Identities=14% Similarity=0.136 Sum_probs=99.9
Q ss_pred EEEEEeCCCcEEEEeCCCCeEEEEecccCCc------ceEEEEEecCCCCcEEEEEECCCcEEEEECCCCCCCCCCCCCC
Q 004477 64 LLISGSDDTHINVWSYSSRKLLHSIETGHSA------NVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAI 137 (751)
Q Consensus 64 ~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~------~V~~v~fsp~s~~~~l~sgs~Dg~V~vwd~~~~~~~~~~~~~~ 137 (751)
.++.++.++.+...|..+|+.+......... ....+.-+|--.+..++.++.++.+..+|..++..
T Consensus 207 ~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~~tG~~-------- 278 (394)
T PRK11138 207 GAIVGGDNGRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGNLVALDLRSGQI-------- 278 (394)
T ss_pred EEEEEcCCCEEEEEEccCChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEcCCeEEEEECCCCCE--------
Confidence 4666777888988999888876654211110 01111122211145677777899999999986521
Q ss_pred CCceeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCCCCCCCCCCccceEEEecccCceecccCCCCCccc
Q 004477 138 TPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLS 217 (751)
Q Consensus 138 ~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 217 (751)
+-... ......+... + ..+..++.||.+..+|..+++. +|...... ...
T Consensus 279 --~W~~~--~~~~~~~~~~--~-~~vy~~~~~g~l~ald~~tG~~--------------~W~~~~~~----------~~~ 327 (394)
T PRK11138 279 --VWKRE--YGSVNDFAVD--G-GRIYLVDQNDRVYALDTRGGVE--------------LWSQSDLL----------HRL 327 (394)
T ss_pred --EEeec--CCCccCcEEE--C-CEEEEEcCCCeEEEEECCCCcE--------------EEcccccC----------CCc
Confidence 11111 1111122222 3 4555677899999999988752 23211000 001
Q ss_pred eEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCccccCCCCCCCCccccccccccccCCccccceEEEEEcCCCCEEEEE
Q 004477 218 LKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLS 297 (751)
Q Consensus 218 v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~vt~v~fspdg~~Ll~~ 297 (751)
..+..+. +.+|++++.||.|.+.|..+++.+..... . ... ...+..+ .+..|+++
T Consensus 328 ~~sp~v~---~g~l~v~~~~G~l~~ld~~tG~~~~~~~~----------------~---~~~-~~s~P~~--~~~~l~v~ 382 (394)
T PRK11138 328 LTAPVLY---NGYLVVGDSEGYLHWINREDGRFVAQQKV----------------D---SSG-FLSEPVV--ADDKLLIQ 382 (394)
T ss_pred ccCCEEE---CCEEEEEeCCCEEEEEECCCCCEEEEEEc----------------C---CCc-ceeCCEE--ECCEEEEE
Confidence 1111222 35788899999999999998765433210 0 000 0111112 24578999
Q ss_pred eCCCcEEEEEC
Q 004477 298 YSGEHVYLMDV 308 (751)
Q Consensus 298 s~d~~I~lwdl 308 (751)
+.||.|+.++.
T Consensus 383 t~~G~l~~~~~ 393 (394)
T PRK11138 383 ARDGTVYAITR 393 (394)
T ss_pred eCCceEEEEeC
Confidence 99999999874
No 355
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=95.82 E-value=0.22 Score=53.94 Aligned_cols=255 Identities=16% Similarity=0.183 Sum_probs=124.7
Q ss_pred CCCCCEEEEE---------eCCCcEEEEeCCCCeEEEEecccCCcceEEEEEecCCCCcEEEEEECCCcEEEEECCCCCC
Q 004477 59 NSKGSLLISG---------SDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSG 129 (751)
Q Consensus 59 s~dg~~LaSg---------s~Dg~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~Dg~V~vwd~~~~~~ 129 (751)
|||+++++.. +..+.+.|||+.+++..... .. ...+....|+|+ |+.|+-.. ++.|.+++...+..
T Consensus 1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~~~~l~-~~-~~~~~~~~~sP~--g~~~~~v~-~~nly~~~~~~~~~ 75 (353)
T PF00930_consen 1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETGEITPLT-PP-PPKLQDAKWSPD--GKYIAFVR-DNNLYLRDLATGQE 75 (353)
T ss_dssp -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTTEEEESS--E-ETTBSEEEE-SS--STEEEEEE-TTEEEEESSTTSEE
T ss_pred CCCCCeEEEEECcEEeeeeccceeEEEEecCCCceEECc-CC-ccccccceeecC--CCeeEEEe-cCceEEEECCCCCe
Confidence 6788877764 23567899999987655433 22 677899999999 78888765 68899998875422
Q ss_pred CCCCCCCCCCceeeccc---------CCceeEEEEecCCCCEEEEE-eCCCcEEEEecCC---CCC--C-------CCCC
Q 004477 130 RGLDDNAITPSALYQCH---------TRRVKKLAVEVGNPHVVWSA-SEDGTLRQHDFRQ---GSS--C-------PPAG 187 (751)
Q Consensus 130 ~~~~~~~~~~~~~~~~h---------~~~V~~l~~sp~~~~~l~s~-s~Dg~I~iwDlr~---~~~--~-------~~~~ 187 (751)
..+.... .-..+.|- -+.-..+-|||++ +.|+.. -.+..|+.+.+-. ... . +..+
T Consensus 76 ~~lT~dg--~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~-~~la~~~~d~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G 152 (353)
T PF00930_consen 76 TQLTTDG--EPGIYNGVPDWVYEEEVFDRRSAVWWSPDS-KYLAFLRFDEREVPEYPLPDYSPPDSQYPEVESIRYPKAG 152 (353)
T ss_dssp EESES----TTTEEESB--HHHHHHTSSSSBSEEE-TTS-SEEEEEEEE-TTS-EEEEEEESSSTESS-EEEEEE--BTT
T ss_pred EEecccc--ceeEEcCccceeccccccccccceEECCCC-CEEEEEEECCcCCceEEeeccCCccccCCcccccccCCCC
Confidence 2111000 00001111 1223568899954 555544 4455555444322 211 0 1122
Q ss_pred CCCCccceEEEecccCceecccCC---CCCccceEEEEEeCCCCcEEEEE--eCC---CeEEEEeCCCCCCccccCCCCC
Q 004477 188 SSHQECRNILLDLRCGAKRSLADP---PKQTLSLKSCDISSTRPHLLLVG--GSD---AFARLYDRRMLPPLTSCQKRMS 259 (751)
Q Consensus 188 ~~~~~~~~~l~~~~~~~~~~~~~~---~~~~~~v~~i~~sp~~~~~l~sg--s~D---~~IriwD~~~~~~~~~~~~~~~ 259 (751)
.........++++..+....+... ......+..+.|.++ +..|++. ..+ ..+.++|..++......
T Consensus 153 ~~np~v~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~d-~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~----- 226 (353)
T PF00930_consen 153 DPNPRVSLFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSPD-GKRLWVQWLNRDQNRLDLVLCDASTGETRVVL----- 226 (353)
T ss_dssp S---EEEEEEEESSSTCCCEE---HHHHTSSEEEEEEEEEET-TEEEEEEEEETTSTEEEEEEEEECTTTCEEEE-----
T ss_pred CcCCceEEEEEECCCCcEEEeeeccccCCCccCcccceecCC-CcEEEEEEcccCCCEEEEEEEECCCCceeEEE-----
Confidence 222233345677766655433333 234567889999995 4533332 222 34566676654321111
Q ss_pred CCCccccccccccccCCccccceEEEEEc-CCCCEEE-EEeCCC--cEEEEECCCCCcceeeeecCCCceeEEeCCCCCC
Q 004477 260 PPPCVNYFCPMHLSEHGRSSLHLTHVTFS-PNGEEVL-LSYSGE--HVYLMDVNHAGGRAMRYTVGDASKIMSFTPTLNG 335 (751)
Q Consensus 260 ~~~~~~~~~~~~~~~~g~~~~~vt~v~fs-pdg~~Ll-~~s~d~--~I~lwdl~~~~~~~~~~~~~~~~~~~~~sp~~~~ 335 (751)
....+.-+ . .-....|. +++..++ ....+| +|++++...+....+..+.-.+...+.+.+..+.
T Consensus 227 -----~e~~~~Wv------~-~~~~~~~~~~~~~~~l~~s~~~G~~hly~~~~~~~~~~~lT~G~~~V~~i~~~d~~~~~ 294 (353)
T PF00930_consen 227 -----EETSDGWV------D-VYDPPHFLGPDGNEFLWISERDGYRHLYLYDLDGGKPRQLTSGDWEVTSILGWDEDNNR 294 (353)
T ss_dssp -----EEESSSSS------S-SSSEEEE-TTTSSEEEEEEETTSSEEEEEEETTSSEEEESS-SSS-EEEEEEEECTSSE
T ss_pred -----EecCCcce------e-eecccccccCCCCEEEEEEEcCCCcEEEEEcccccceeccccCceeecccceEcCCCCE
Confidence 00000111 0 11234454 6666544 444565 6666677664322222222223346777777666
Q ss_pred cccC
Q 004477 336 LELQ 339 (751)
Q Consensus 336 ~~~~ 339 (751)
+.+.
T Consensus 295 iyf~ 298 (353)
T PF00930_consen 295 IYFT 298 (353)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 5544
No 356
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=95.81 E-value=0.83 Score=50.25 Aligned_cols=201 Identities=11% Similarity=0.042 Sum_probs=108.0
Q ss_pred CCCEEEEEeCCCcEEEEeCCCCeEEEEecccCCcceEE------EEEecCCCCcEEEEEECCCcEEEEECCCCCCCCCCC
Q 004477 61 KGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFC------TKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDD 134 (751)
Q Consensus 61 dg~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~V~~------v~fsp~s~~~~l~sgs~Dg~V~vwd~~~~~~~~~~~ 134 (751)
.+..+..++.++.|.-+|..+|+.+..........+.. +.-.|--.+..++.++.++.+..+|..+++.
T Consensus 68 ~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~v~~~~g~l~ald~~tG~~----- 142 (394)
T PRK11138 68 AYNKVYAADRAGLVKALDADTGKEIWSVDLSEKDGWFSKNKSALLSGGVTVAGGKVYIGSEKGQVYALNAEDGEV----- 142 (394)
T ss_pred ECCEEEEECCCCeEEEEECCCCcEeeEEcCCCcccccccccccccccccEEECCEEEEEcCCCEEEEEECCCCCC-----
Confidence 35677778888999999999999888763322111110 0001111145677788899999999986532
Q ss_pred CCCCCceeecccCCceeE-EEEecCCCCEEEEEeCCCcEEEEecCCCCCCCCCCCCCCccceEEEecccCceecccCCCC
Q 004477 135 NAITPSALYQCHTRRVKK-LAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPK 213 (751)
Q Consensus 135 ~~~~~~~~~~~h~~~V~~-l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 213 (751)
+-...... .+.+ .... + ..++.++.+|.|..+|..+++. +|........ + ....
T Consensus 143 -----~W~~~~~~-~~~ssP~v~--~-~~v~v~~~~g~l~ald~~tG~~--------------~W~~~~~~~~-~-~~~~ 197 (394)
T PRK11138 143 -----AWQTKVAG-EALSRPVVS--D-GLVLVHTSNGMLQALNESDGAV--------------KWTVNLDVPS-L-TLRG 197 (394)
T ss_pred -----cccccCCC-ceecCCEEE--C-CEEEEECCCCEEEEEEccCCCE--------------eeeecCCCCc-c-cccC
Confidence 22222111 1111 1121 3 3455677889999999998863 3332221000 0 0000
Q ss_pred CccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCccccCCCCCCCCccccccccccccCCccccceEEEEEcC--CC
Q 004477 214 QTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSP--NG 291 (751)
Q Consensus 214 ~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~vt~v~fsp--dg 291 (751)
...++ +. ...+++++.++.+..+|..+++.+........... ..+ .....+.-+| .+
T Consensus 198 ~~sP~----v~---~~~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~--~~~------------~~~~~~~~sP~v~~ 256 (394)
T PRK11138 198 ESAPA----TA---FGGAIVGGDNGRVSAVLMEQGQLIWQQRISQPTGA--TEI------------DRLVDVDTTPVVVG 256 (394)
T ss_pred CCCCE----EE---CCEEEEEcCCCEEEEEEccCChhhheeccccCCCc--cch------------hcccccCCCcEEEC
Confidence 01111 11 23567778889999999988775543221100000 000 0001111122 25
Q ss_pred CEEEEEeCCCcEEEEECCCCC
Q 004477 292 EEVLLSYSGEHVYLMDVNHAG 312 (751)
Q Consensus 292 ~~Ll~~s~d~~I~lwdl~~~~ 312 (751)
..|++++.++.++.+|+.+++
T Consensus 257 ~~vy~~~~~g~l~ald~~tG~ 277 (394)
T PRK11138 257 GVVYALAYNGNLVALDLRSGQ 277 (394)
T ss_pred CEEEEEEcCCeEEEEECCCCC
Confidence 567778889999999999864
No 357
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=95.72 E-value=1.8 Score=47.37 Aligned_cols=122 Identities=13% Similarity=0.147 Sum_probs=73.9
Q ss_pred cEEEEEECCCCCEEEEEeCCCcEEEEeCCCCeE------------------------------------------EEEec
Q 004477 52 CVNAISWNSKGSLLISGSDDTHINVWSYSSRKL------------------------------------------LHSIE 89 (751)
Q Consensus 52 ~V~~l~~s~dg~~LaSgs~Dg~I~IWd~~~~~~------------------------------------------~~~l~ 89 (751)
.|+.+.|.++.--||.|-..|.|.||.....+. ...+.
T Consensus 3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l~ 82 (395)
T PF08596_consen 3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTLL 82 (395)
T ss_dssp -EEEEEEETTTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEEE
T ss_pred eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhhe
Confidence 588999999988899999999999986431110 01111
Q ss_pred ccCCcceEEEEEecCCCCcEEEEEECCCcEEEEECCCCCCCCCCCCCCCCceeecccCCceeEEEEec----CCC---CE
Q 004477 90 TGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEV----GNP---HV 162 (751)
Q Consensus 90 ~~h~~~V~~v~fsp~s~~~~l~sgs~Dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp----~~~---~~ 162 (751)
....+.|++++.+.- -+++.|..+|.+.|.|++.+.--.. ........-......|+++.|.. +++ -.
T Consensus 83 ~~~~g~vtal~~S~i---GFvaigy~~G~l~viD~RGPavI~~--~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~ 157 (395)
T PF08596_consen 83 DAKQGPVTALKNSDI---GFVAIGYESGSLVVIDLRGPAVIYN--ENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSIC 157 (395)
T ss_dssp ---S-SEEEEEE-BT---SEEEEEETTSEEEEEETTTTEEEEE--EEGGG--T-SS----EEEEEEEEEE-TTSSSEEEE
T ss_pred eccCCcEeEEecCCC---cEEEEEecCCcEEEEECCCCeEEee--ccccccccccccccCeeEEEEEEEecCCCcccceE
Confidence 234688999999855 5999999999999999974311000 00000000111345688898872 233 36
Q ss_pred EEEEeCCCcEEEEecC
Q 004477 163 VWSASEDGTLRQHDFR 178 (751)
Q Consensus 163 l~s~s~Dg~I~iwDlr 178 (751)
++.|...|.+.+|.+-
T Consensus 158 L~vGTn~G~v~~fkIl 173 (395)
T PF08596_consen 158 LLVGTNSGNVLTFKIL 173 (395)
T ss_dssp EEEEETTSEEEEEEEE
T ss_pred EEEEeCCCCEEEEEEe
Confidence 8889999999999885
No 358
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=95.71 E-value=1.8 Score=46.18 Aligned_cols=146 Identities=12% Similarity=0.139 Sum_probs=88.2
Q ss_pred CCEEEEEeC----------CCcEEEEeCCCC-----eEEEEecccCCcceEEEEEecCCCCcEEEEEECCCcEEEEECCC
Q 004477 62 GSLLISGSD----------DTHINVWSYSSR-----KLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSR 126 (751)
Q Consensus 62 g~~LaSgs~----------Dg~I~IWd~~~~-----~~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~Dg~V~vwd~~~ 126 (751)
-.+|+.|.. .|.|.++++... +..........++|++++-.. +. |+.+. .+.|.+|++..
T Consensus 42 ~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~i~~~~~~g~V~ai~~~~---~~-lv~~~-g~~l~v~~l~~ 116 (321)
T PF03178_consen 42 KEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKLIHSTEVKGPVTAICSFN---GR-LVVAV-GNKLYVYDLDN 116 (321)
T ss_dssp SEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEEEEEEEESS-EEEEEEET---TE-EEEEE-TTEEEEEEEET
T ss_pred cCEEEEEecccccccccccCcEEEEEEEEcccccceEEEEEEEEeecCcceEhhhhC---CE-EEEee-cCEEEEEEccC
Confidence 468887753 288999999873 322222235678999998772 45 44443 48999999986
Q ss_pred CCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCCCCCCCCCCccceEEEecccCcee
Q 004477 127 FSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKR 206 (751)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 206 (751)
.. . ..+...+.. ...|.++... +++++.|...+.|.++..+..... ...+-
T Consensus 117 ~~--~-----l~~~~~~~~-~~~i~sl~~~---~~~I~vgD~~~sv~~~~~~~~~~~----------l~~va-------- 167 (321)
T PF03178_consen 117 SK--T-----LLKKAFYDS-PFYITSLSVF---KNYILVGDAMKSVSLLRYDEENNK----------LILVA-------- 167 (321)
T ss_dssp TS--S-----EEEEEEE-B-SSSEEEEEEE---TTEEEEEESSSSEEEEEEETTTE-----------EEEEE--------
T ss_pred cc--c-----chhhheecc-eEEEEEEecc---ccEEEEEEcccCEEEEEEEccCCE----------EEEEE--------
Confidence 42 0 012222222 2356666654 358888888888887755542100 01110
Q ss_pred cccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCC
Q 004477 207 SLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRR 246 (751)
Q Consensus 207 ~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~ 246 (751)
. .....+++++.|-+++ ..++++..+|.|.++...
T Consensus 168 ---~-d~~~~~v~~~~~l~d~-~~~i~~D~~gnl~~l~~~ 202 (321)
T PF03178_consen 168 ---R-DYQPRWVTAAEFLVDE-DTIIVGDKDGNLFVLRYN 202 (321)
T ss_dssp ---E-ESS-BEEEEEEEE-SS-SEEEEEETTSEEEEEEE-
T ss_pred ---e-cCCCccEEEEEEecCC-cEEEEEcCCCeEEEEEEC
Confidence 0 1124578899998754 699999999999999875
No 359
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=95.67 E-value=0.24 Score=45.90 Aligned_cols=97 Identities=13% Similarity=-0.019 Sum_probs=77.9
Q ss_pred HHHHhhhcCCChhHHHHHhHHHHhcccCCCCCchhhhhHhHHHHHhhcccccchhhhHHHhhHHHhcCCCCCcchHHHHH
Q 004477 369 IARNSLEEGKHPYYGIEACNEVLEGHLSGIGPMLRHECLCIRAALLLKRKWKNDAQMAIRDCYNARRIDSSSFRAHLYMS 448 (751)
Q Consensus 369 ~~~~~~~~g~~~~~ai~~~~~~i~~~~~~~~~~~~~~~~~~ra~~~~~r~w~~d~y~al~d~~~a~~~~~~~~~a~~~~~ 448 (751)
.+......|. +..++..|..++...+.. ...+.+++.++...+ +.-.|+.....++.++|.++.++++++
T Consensus 30 ~g~~~~~~g~-~~~A~~~~~~al~~~P~~------~~a~~~lg~~~~~~g---~~~~A~~~y~~Al~l~p~~~~a~~~lg 99 (144)
T PRK15359 30 SGYASWQEGD-YSRAVIDFSWLVMAQPWS------WRAHIALAGTWMMLK---EYTTAINFYGHALMLDASHPEPVYQTG 99 (144)
T ss_pred HHHHHHHcCC-HHHHHHHHHHHHHcCCCc------HHHHHHHHHHHHHHh---hHHHHHHHHHHHHhcCCCCcHHHHHHH
Confidence 3455566666 888899999988765543 446677777776644 355688889999999999999999999
Q ss_pred HHHHHhcchHHHHHHHHHhcccCCCCh
Q 004477 449 EALEQLCKYKEALDFAIAAQCLDPSNS 475 (751)
Q Consensus 449 ~~l~~l~~~~~a~~~~~~~~~~~p~~~ 475 (751)
.|+..+|++.+|..++.......|...
T Consensus 100 ~~l~~~g~~~eAi~~~~~Al~~~p~~~ 126 (144)
T PRK15359 100 VCLKMMGEPGLAREAFQTAIKMSYADA 126 (144)
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCh
Confidence 999999999999999999888888654
No 360
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=95.64 E-value=0.08 Score=59.25 Aligned_cols=124 Identities=19% Similarity=0.186 Sum_probs=86.5
Q ss_pred cCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCCCCCCCCCCccceEEEecccCceecccCCCCCccceEEEEEeC
Q 004477 146 HTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISS 225 (751)
Q Consensus 146 h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp 225 (751)
|...|+--++.. ...+++.|+.-|.+.+|+-..++.... ...+....+..+.+++
T Consensus 32 ~~~~v~lTc~ds-t~~~l~~GsS~G~lyl~~R~~~~~~~~------------------------~~~~~~~~~~~~~vs~ 86 (726)
T KOG3621|consen 32 FPARVKLTCVDA-TEEYLAMGSSAGSVYLYNRHTGEMRKL------------------------KNEGATGITCVRSVSS 86 (726)
T ss_pred CcceEEEEEeec-CCceEEEecccceEEEEecCchhhhcc------------------------cccCccceEEEEEecc
Confidence 445565556665 567899999999999998766653211 1111234456677888
Q ss_pred CCCcEEEEEeCCCeEEEEeCCCCCCccccCCCCCCCCccccccccccccCCccccceEEEEEcCCCCEEEEEeCCCcEEE
Q 004477 226 TRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYL 305 (751)
Q Consensus 226 ~~~~~l~sgs~D~~IriwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~vt~v~fspdg~~Ll~~s~d~~I~l 305 (751)
. .+++|.|+..|.|.++-+....+. -..++.+.+.. | ...||+++|++|+..|++|...|+|.+
T Consensus 87 ~-e~lvAagt~~g~V~v~ql~~~~p~-----------~~~~~t~~d~~---~-~~rVTal~Ws~~~~k~ysGD~~Gkv~~ 150 (726)
T KOG3621|consen 87 V-EYLVAAGTASGRVSVFQLNKELPR-----------DLDYVTPCDKS---H-KCRVTALEWSKNGMKLYSGDSQGKVVL 150 (726)
T ss_pred h-hHhhhhhcCCceEEeehhhccCCC-----------cceeecccccc---C-CceEEEEEecccccEEeecCCCceEEE
Confidence 5 688999999999999988763321 22333333221 2 236999999999999999999999999
Q ss_pred EECCC
Q 004477 306 MDVNH 310 (751)
Q Consensus 306 wdl~~ 310 (751)
-.++.
T Consensus 151 ~~L~s 155 (726)
T KOG3621|consen 151 TELDS 155 (726)
T ss_pred EEech
Confidence 98887
No 361
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=95.59 E-value=1.3 Score=47.98 Aligned_cols=72 Identities=11% Similarity=0.163 Sum_probs=44.6
Q ss_pred CCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEecccC----------------CcceEEEEEecCCCCcEEEEE
Q 004477 50 QGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGH----------------SANVFCTKFVPETSDELVVSG 113 (751)
Q Consensus 50 ~~~V~~l~~s~dg~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h----------------~~~V~~v~fsp~s~~~~l~sg 113 (751)
...+....|||+|+.||-.. ++.|.+++..++...+....|- -+.-..+-|||+ +++|+..
T Consensus 42 ~~~~~~~~~sP~g~~~~~v~-~~nly~~~~~~~~~~~lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd--~~~la~~ 118 (353)
T PF00930_consen 42 PPKLQDAKWSPDGKYIAFVR-DNNLYLRDLATGQETQLTTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPD--SKYLAFL 118 (353)
T ss_dssp ETTBSEEEE-SSSTEEEEEE-TTEEEEESSTTSEEEESES--TTTEEESB--HHHHHHTSSSSBSEEE-TT--SSEEEEE
T ss_pred ccccccceeecCCCeeEEEe-cCceEEEECCCCCeEEeccccceeEEcCccceeccccccccccceEECCC--CCEEEEE
Confidence 66788999999999999885 5789999988775443322220 012246789999 6777765
Q ss_pred EC-CCcEEEEEC
Q 004477 114 AG-DAEVRLFNL 124 (751)
Q Consensus 114 s~-Dg~V~vwd~ 124 (751)
.. +..|+.+.+
T Consensus 119 ~~d~~~v~~~~~ 130 (353)
T PF00930_consen 119 RFDEREVPEYPL 130 (353)
T ss_dssp EEE-TTS-EEEE
T ss_pred EECCcCCceEEe
Confidence 43 444444433
No 362
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=95.54 E-value=0.055 Score=59.79 Aligned_cols=77 Identities=18% Similarity=0.257 Sum_probs=65.8
Q ss_pred CcceEEEEEecCCCCcEEEEEECCCcEEEEECCCCCCCCCCCCCCCCceeecccCCcee-EEEEecCCCCEEEEEeCCCc
Q 004477 93 SANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVK-KLAVEVGNPHVVWSASEDGT 171 (751)
Q Consensus 93 ~~~V~~v~fsp~s~~~~l~sgs~Dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~-~l~~sp~~~~~l~s~s~Dg~ 171 (751)
...|--+.|+|. -.+||.+-.+|.|.++.+.- ..+.++.-|...|+ +++|.| +|++++.|=.||+
T Consensus 20 ~~~i~~~ewnP~--~dLiA~~t~~gelli~R~n~-----------qRlwtip~p~~~v~~sL~W~~-DGkllaVg~kdG~ 85 (665)
T KOG4640|consen 20 PINIKRIEWNPK--MDLIATRTEKGELLIHRLNW-----------QRLWTIPIPGENVTASLCWRP-DGKLLAVGFKDGT 85 (665)
T ss_pred ccceEEEEEcCc--cchhheeccCCcEEEEEecc-----------ceeEeccCCCCccceeeeecC-CCCEEEEEecCCe
Confidence 356788999999 58999999999999998873 44777777777787 999999 6899999999999
Q ss_pred EEEEecCCCCCC
Q 004477 172 LRQHDFRQGSSC 183 (751)
Q Consensus 172 I~iwDlr~~~~~ 183 (751)
|++.|..++..+
T Consensus 86 I~L~Dve~~~~l 97 (665)
T KOG4640|consen 86 IRLHDVEKGGRL 97 (665)
T ss_pred EEEEEccCCCce
Confidence 999999998744
No 363
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=95.53 E-value=3.8 Score=45.35 Aligned_cols=117 Identities=13% Similarity=0.123 Sum_probs=68.2
Q ss_pred cEEEEEECCCCCEEEEE-eCC----CcEEEEeCCCCeEEEEecccCCcceEEEEEecCCCCcEEEEEECCC---------
Q 004477 52 CVNAISWNSKGSLLISG-SDD----THINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDA--------- 117 (751)
Q Consensus 52 ~V~~l~~s~dg~~LaSg-s~D----g~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~Dg--------- 117 (751)
.+..+.++|+|++||-+ +.. ..|+|.|+.+++.+...... .....+.|.++ ++.|+-...|.
T Consensus 125 ~~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~--~~~~~~~W~~d--~~~~~y~~~~~~~~~~~~~~ 200 (414)
T PF02897_consen 125 SLGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIEN--PKFSSVSWSDD--GKGFFYTRFDEDQRTSDSGY 200 (414)
T ss_dssp EEEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEE--EESEEEEECTT--SSEEEEEECSTTTSS-CCGC
T ss_pred EeeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCcccc--cccceEEEeCC--CCEEEEEEeCcccccccCCC
Confidence 34467899999988854 333 44999999999776543121 11223999999 55555444332
Q ss_pred --cEEEEECCCCCCCCCCCCCCCCceeecccCCc--eeEEEEecCCCCEEEEEeCCCc---EEEEecCCC
Q 004477 118 --EVRLFNLSRFSGRGLDDNAITPSALYQCHTRR--VKKLAVEVGNPHVVWSASEDGT---LRQHDFRQG 180 (751)
Q Consensus 118 --~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~--V~~l~~sp~~~~~l~s~s~Dg~---I~iwDlr~~ 180 (751)
.|+.|.+.+... +....+...... ...+..++++..+++......+ +.+.|+...
T Consensus 201 ~~~v~~~~~gt~~~--------~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~ 262 (414)
T PF02897_consen 201 PRQVYRHKLGTPQS--------EDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDG 262 (414)
T ss_dssp CEEEEEEETTS-GG--------G-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCT
T ss_pred CcEEEEEECCCChH--------hCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEecccc
Confidence 378888876432 112344443333 4577888855445555554444 666676654
No 364
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=95.50 E-value=0.065 Score=62.84 Aligned_cols=95 Identities=20% Similarity=0.099 Sum_probs=80.4
Q ss_pred hHHHHHHHHHhhhcCCChhHHHHHhHHHHhcccCCCCCchhhhhHhHHHHHhhcccccchhhhHHHhhHHHhcCCCCCcc
Q 004477 363 CRMLVEIARNSLEEGKHPYYGIEACNEVLEGHLSGIGPMLRHECLCIRAALLLKRKWKNDAQMAIRDCYNARRIDSSSFR 442 (751)
Q Consensus 363 ~~~l~~~~~~~~~~g~~~~~ai~~~~~~i~~~~~~~~~~~~~~~~~~ra~~~~~r~w~~d~y~al~d~~~a~~~~~~~~~ 442 (751)
...++..++..+..|+ |..||..|..+|...+. ...|.|++.++++.+ +...|+.+|.+++.++|.+.+
T Consensus 127 a~~~k~~G~~~~~~~~-~~~Ai~~y~~al~~~p~-------~~~~~n~a~~~~~l~---~~~~Ai~~~~~al~l~p~~~~ 195 (615)
T TIGR00990 127 AAKLKEKGNKAYRNKD-FNKAIKLYSKAIECKPD-------PVYYSNRAACHNALG---DWEKVVEDTTAALELDPDYSK 195 (615)
T ss_pred HHHHHHHHHHHHHcCC-HHHHHHHHHHHHhcCCc-------hHHHHHHHHHHHHhC---CHHHHHHHHHHHHHcCCCCHH
Confidence 4567778888888888 99999999999986543 257899999998763 456799999999999999999
Q ss_pred hHHHHHHHHHHhcchHHHHHHHHHhc
Q 004477 443 AHLYMSEALEQLCKYKEALDFAIAAQ 468 (751)
Q Consensus 443 a~~~~~~~l~~l~~~~~a~~~~~~~~ 468 (751)
++++++.++..++++.+|+..+..+.
T Consensus 196 a~~~~a~a~~~lg~~~eA~~~~~~~~ 221 (615)
T TIGR00990 196 ALNRRANAYDGLGKYADALLDLTASC 221 (615)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 99999999999999999997665443
No 365
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=95.46 E-value=0.04 Score=40.00 Aligned_cols=34 Identities=21% Similarity=0.414 Sum_probs=30.0
Q ss_pred CCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCeE
Q 004477 50 QGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKL 84 (751)
Q Consensus 50 ~~~V~~l~~s~dg~~LaSgs~Dg~I~IWd~~~~~~ 84 (751)
...|.+++|+|...+||.|..||.|.|+.+ +++.
T Consensus 11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~qr 44 (47)
T PF12894_consen 11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRL-NWQR 44 (47)
T ss_pred CCcEEEEEECCCCCEEEEEECCCeEEEEEC-CCcC
Confidence 457999999999999999999999999998 4544
No 366
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=95.43 E-value=1.1 Score=49.76 Aligned_cols=221 Identities=11% Similarity=0.120 Sum_probs=103.6
Q ss_pred EEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEecccCCcceEEEEEecCCCCcEEEEEECCCcEEEE-
Q 004477 44 RELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLF- 122 (751)
Q Consensus 44 ~~L~gH~~~V~~l~~s~dg~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~Dg~V~vw- 122 (751)
+.+-...-....|.++|+|+.++.+ .||...|+.....+... .+.-..+.|.+. + .+|+-...++|.|+
T Consensus 26 k~lg~~~~~p~~ls~npngr~v~V~-g~geY~iyt~~~~r~k~------~G~g~~~vw~~~--n-~yAv~~~~~~I~I~k 95 (443)
T PF04053_consen 26 KELGSCEIYPQSLSHNPNGRFVLVC-GDGEYEIYTALAWRNKA------FGSGLSFVWSSR--N-RYAVLESSSTIKIYK 95 (443)
T ss_dssp EEEEE-SS--SEEEE-TTSSEEEEE-ETTEEEEEETTTTEEEE------EEE-SEEEE-TS--S-EEEEE-TTS-EEEEE
T ss_pred ccCCCCCcCCeeEEECCCCCEEEEE-cCCEEEEEEccCCcccc------cCceeEEEEecC--c-cEEEEECCCeEEEEE
Confidence 3444445557899999999999885 56788888754433322 233456788885 3 46666668899996
Q ss_pred ECCCCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCCCCCCCCCCccceEEEeccc
Q 004477 123 NLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRC 202 (751)
Q Consensus 123 d~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~~~~~~~~~~~~l~~~~~ 202 (751)
++... ....+.- ...+..|- + |.+|...+.+ .|.+||+.+++.. ..
T Consensus 96 n~~~~-----------~~k~i~~-~~~~~~If--~--G~LL~~~~~~-~i~~yDw~~~~~i--------------~~--- 141 (443)
T PF04053_consen 96 NFKNE-----------VVKSIKL-PFSVEKIF--G--GNLLGVKSSD-FICFYDWETGKLI--------------RR--- 141 (443)
T ss_dssp TTEE------------TT------SS-EEEEE-----SSSEEEEETT-EEEEE-TTT--EE--------------EE---
T ss_pred cCccc-----------cceEEcC-CcccceEE--c--CcEEEEECCC-CEEEEEhhHccee--------------eE---
Confidence 44321 1122221 12344442 2 5666666554 8999999987632 10
Q ss_pred CceecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCccccCCCCCCCCccccccccccccCCccccce
Q 004477 203 GAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHL 282 (751)
Q Consensus 203 ~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v 282 (751)
+ ....|+.+.|+++ +.+++..+.+ .+.|++........ .........|...+.. ...|
T Consensus 142 -----i-----~v~~vk~V~Ws~~-g~~val~t~~-~i~il~~~~~~~~~-----~~~~g~e~~f~~~~E~-----~~~I 199 (443)
T PF04053_consen 142 -----I-----DVSAVKYVIWSDD-GELVALVTKD-SIYILKYNLEAVAA-----IPEEGVEDAFELIHEI-----SERI 199 (443)
T ss_dssp -----E-----SS-E-EEEEE-TT-SSEEEEE-S--SEEEEEE-HHHHHH-----BTTTB-GGGEEEEEEE------S--
T ss_pred -----E-----ecCCCcEEEEECC-CCEEEEEeCC-eEEEEEecchhccc-----ccccCchhceEEEEEe-----ccee
Confidence 1 1224789999995 6788777655 66776654320000 0000001112211110 2257
Q ss_pred EEEEEcCCCCEEEEEeCCCcEEEEECCCCCcceeeeecCCCceeEEeCCCCCCc
Q 004477 283 THVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVGDASKIMSFTPTLNGL 336 (751)
Q Consensus 283 t~v~fspdg~~Ll~~s~d~~I~lwdl~~~~~~~~~~~~~~~~~~~~~sp~~~~~ 336 (751)
.+..|..| .++-.+.. +|+. +-++ ..........+...+.+.|..+.+
T Consensus 200 kSg~W~~d--~fiYtT~~-~lkY--l~~G-e~~~i~~ld~~~yllgy~~~~~~l 247 (443)
T PF04053_consen 200 KSGCWVED--CFIYTTSN-HLKY--LVNG-ETGIIAHLDKPLYLLGYLPKENRL 247 (443)
T ss_dssp SEEEEETT--EEEEE-TT-EEEE--EETT-EEEEEEE-SS--EEEEEETTTTEE
T ss_pred EEEEEEcC--EEEEEcCC-eEEE--EEcC-CcceEEEcCCceEEEEEEccCCEE
Confidence 88888877 33333333 6666 3332 233333345566666666644433
No 367
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=95.27 E-value=0.88 Score=50.25 Aligned_cols=121 Identities=12% Similarity=0.125 Sum_probs=71.1
Q ss_pred EEeccCCCcEEEEEECCCCCEEEEEe---CC-CcEEEEeCCCCeEEEEecccCCcceEEEEEecCCCCcEEEEEECCCcE
Q 004477 44 RELEGHQGCVNAISWNSKGSLLISGS---DD-THINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEV 119 (751)
Q Consensus 44 ~~L~gH~~~V~~l~~s~dg~~LaSgs---~D-g~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~Dg~V 119 (751)
+.+..-...+..=+|+|+++.++--+ .. ..+.++++.+++....+ ...+.-..-+|+|+. ..++++...|+..
T Consensus 186 ~~l~~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~--~~~g~~~~P~fspDG-~~l~f~~~rdg~~ 262 (425)
T COG0823 186 QKLTDSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVIL--NFNGNNGAPAFSPDG-SKLAFSSSRDGSP 262 (425)
T ss_pred eEecccCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceee--ccCCccCCccCCCCC-CEEEEEECCCCCc
Confidence 34444455677788999998766542 22 46999999887665544 134455677899993 3444567778776
Q ss_pred EEEECCCCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEe
Q 004477 120 RLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHD 176 (751)
Q Consensus 120 ~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwD 176 (751)
.||-+....+. +..+..-.+.-..=.|+|++..++.+.+..|.-.||-
T Consensus 263 ~iy~~dl~~~~---------~~~Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~ 310 (425)
T COG0823 263 DIYLMDLDGKN---------LPRLTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYL 310 (425)
T ss_pred cEEEEcCCCCc---------ceecccCCccccCccCCCCCCEEEEEeCCCCCcceEE
Confidence 55544432211 1122222222235578996666666666666654443
No 368
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=95.26 E-value=2.1 Score=43.48 Aligned_cols=183 Identities=15% Similarity=0.118 Sum_probs=87.9
Q ss_pred ccCCcceEEEEEecCCCCcEEEEEECCCcEEEEECCCCCCCCCCCCCCCCceeeccc-CCceeEEEEecCCCCEEEEEeC
Q 004477 90 TGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCH-TRRVKKLAVEVGNPHVVWSASE 168 (751)
Q Consensus 90 ~~h~~~V~~v~fsp~s~~~~l~sgs~Dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h-~~~V~~l~~sp~~~~~l~s~s~ 168 (751)
.+-...+..++|.|++ +.++++....+.|...+.. + +.+..+.-. .+-.-.|++.. ++.++++.-.
T Consensus 18 ~g~~~e~SGLTy~pd~-~tLfaV~d~~~~i~els~~---G--------~vlr~i~l~g~~D~EgI~y~g-~~~~vl~~Er 84 (248)
T PF06977_consen 18 PGILDELSGLTYNPDT-GTLFAVQDEPGEIYELSLD---G--------KVLRRIPLDGFGDYEGITYLG-NGRYVLSEER 84 (248)
T ss_dssp TT--S-EEEEEEETTT-TEEEEEETTTTEEEEEETT-------------EEEEEE-SS-SSEEEEEE-S-TTEEEEEETT
T ss_pred CCccCCccccEEcCCC-CeEEEEECCCCEEEEEcCC---C--------CEEEEEeCCCCCCceeEEEEC-CCEEEEEEcC
Confidence 5566679999999985 5677777778888777764 2 223333222 23456777764 4455554445
Q ss_pred CCcEEEEecCCCCCCCCCCCCCCccceEEEecccCceecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCC
Q 004477 169 DGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRML 248 (751)
Q Consensus 169 Dg~I~iwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~ 248 (751)
++.+.++++....... .. ..+.. ..+.........+-.++|+|... .|+++-...-.+||.++..
T Consensus 85 ~~~L~~~~~~~~~~~~-------~~-~~~~~------~~l~~~~~~N~G~EGla~D~~~~-~L~v~kE~~P~~l~~~~~~ 149 (248)
T PF06977_consen 85 DQRLYIFTIDDDTTSL-------DR-ADVQK------ISLGFPNKGNKGFEGLAYDPKTN-RLFVAKERKPKRLYEVNGF 149 (248)
T ss_dssp TTEEEEEEE----TT---------E-EEEEE------EE---S---SS--EEEEEETTTT-EEEEEEESSSEEEEEEEST
T ss_pred CCcEEEEEEecccccc-------ch-hhceE------EecccccCCCcceEEEEEcCCCC-EEEEEeCCCChhhEEEccc
Confidence 8999999986543210 00 00000 01111222445688999999644 4445556666677776542
Q ss_pred CCccccCCCCCCCCccccccccccccCCccccceEEEEEcCCCC-EEEEEeCCCcEEEEECCC
Q 004477 249 PPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGE-EVLLSYSGEHVYLMDVNH 310 (751)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~vt~v~fspdg~-~Ll~~s~d~~I~lwdl~~ 310 (751)
.... ................-..+.+++++|... .++.+..+..|..+|...
T Consensus 150 ~~~~----------~~~~~~~~~~~~~~~~~~d~S~l~~~p~t~~lliLS~es~~l~~~d~~G 202 (248)
T PF06977_consen 150 PGGF----------DLFVSDDQDLDDDKLFVRDLSGLSYDPRTGHLLILSDESRLLLELDRQG 202 (248)
T ss_dssp T-SS------------EEEE-HHHH-HT--SS---EEEEETTTTEEEEEETTTTEEEEE-TT-
T ss_pred cCcc----------ceeeccccccccccceeccccceEEcCCCCeEEEEECCCCeEEEECCCC
Confidence 1000 000000000000000111378899999654 555566688898898444
No 369
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=95.18 E-value=0.35 Score=43.92 Aligned_cols=111 Identities=16% Similarity=-0.007 Sum_probs=84.1
Q ss_pred cCcchhHHHHHHHHHhhhcCCChhHHHHHhHHHHhcccCCCCCchhhhhHhHHHHHhhcccccchhhhHHHhhHHHhcCC
Q 004477 358 TGLGKCRMLVEIARNSLEEGKHPYYGIEACNEVLEGHLSGIGPMLRHECLCIRAALLLKRKWKNDAQMAIRDCYNARRID 437 (751)
Q Consensus 358 ~~~~~~~~l~~~~~~~~~~g~~~~~ai~~~~~~i~~~~~~~~~~~~~~~~~~ra~~~~~r~w~~d~y~al~d~~~a~~~~ 437 (751)
..+.....+...+...+..++ +..|+..+..++...+.. ...+.+.+..+...+. .-.|+.....++.++
T Consensus 12 ~~p~~~~~~~~~a~~~~~~~~-~~~A~~~~~~~~~~~p~~------~~~~~~la~~~~~~~~---~~~A~~~~~~~~~~~ 81 (135)
T TIGR02552 12 LDSEQLEQIYALAYNLYQQGR-YDEALKLFQLLAAYDPYN------SRYWLGLAACCQMLKE---YEEAIDAYALAAALD 81 (135)
T ss_pred CChhhHHHHHHHHHHHHHccc-HHHHHHHHHHHHHhCCCc------HHHHHHHHHHHHHHHH---HHHHHHHHHHHHhcC
Confidence 344444555666666777777 888888888888766543 3455666666665533 345677778889999
Q ss_pred CCCcchHHHHHHHHHHhcchHHHHHHHHHhcccCCCChhhh
Q 004477 438 SSSFRAHLYMSEALEQLCKYKEALDFAIAAQCLDPSNSVMA 478 (751)
Q Consensus 438 ~~~~~a~~~~~~~l~~l~~~~~a~~~~~~~~~~~p~~~~~~ 478 (751)
|.....++.++.++...+++.+|+..++......|......
T Consensus 82 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 122 (135)
T TIGR02552 82 PDDPRPYFHAAECLLALGEPESALKALDLAIEICGENPEYS 122 (135)
T ss_pred CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHH
Confidence 99999999999999999999999999999998888766543
No 370
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.97 E-value=1.1 Score=48.85 Aligned_cols=203 Identities=14% Similarity=0.180 Sum_probs=115.8
Q ss_pred EEEEeCCCcEEEEeCCCCeEEEEecccCCcceEEEEEecCCCCcEE-----EEEECCCcEEEEECCCCCCCCCCCCCCCC
Q 004477 65 LISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELV-----VSGAGDAEVRLFNLSRFSGRGLDDNAITP 139 (751)
Q Consensus 65 LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~s~~~~l-----~sgs~Dg~V~vwd~~~~~~~~~~~~~~~~ 139 (751)
|.++..-..|.--|++.|+.+... .-|.. |.-+.+.|+..+..+ +.|=.|..|.=||++.... ..
T Consensus 349 l~~~~~~~~l~klDIE~GKIVeEW-k~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~--------~k 418 (644)
T KOG2395|consen 349 LMDGGEQDKLYKLDIERGKIVEEW-KFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGK--------NK 418 (644)
T ss_pred eeCCCCcCcceeeecccceeeeEe-eccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCc--------ce
Confidence 445555566777788999988887 44444 888888887543333 2344678899999985321 11
Q ss_pred ceeeccc----CCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCCCCCCCCCCccceEEEecccCceecccCCCCCc
Q 004477 140 SALYQCH----TRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQT 215 (751)
Q Consensus 140 ~~~~~~h----~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 215 (751)
+..-++| ...-.|.+.. +.-+++.||.+|.||+||- .+... ....|+..
T Consensus 419 l~~~q~kqy~~k~nFsc~aTT--~sG~IvvgS~~GdIRLYdr-i~~~A------------------------KTAlPgLG 471 (644)
T KOG2395|consen 419 LAVVQSKQYSTKNNFSCFATT--ESGYIVVGSLKGDIRLYDR-IGRRA------------------------KTALPGLG 471 (644)
T ss_pred eeeeeccccccccccceeeec--CCceEEEeecCCcEEeehh-hhhhh------------------------hhcccccC
Confidence 2222222 1223444443 4457889999999999995 33211 22345566
Q ss_pred cceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCC-----Ccc--ccCCCCCCCCccccccccccccCCccccceEE-EEE
Q 004477 216 LSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLP-----PLT--SCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTH-VTF 287 (751)
Q Consensus 216 ~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~-----~~~--~~~~~~~~~~~~~~~~~~~~~~~g~~~~~vt~-v~f 287 (751)
.+|+.+..+.+ |.+|+.. .+.++.+.++.-.. ++. .+.....|.+-...+.|.|+...... +.. ..|
T Consensus 472 ~~I~hVdvtad-GKwil~T-c~tyLlLi~t~~kdg~~~~~~Gf~k~~~~k~p~pk~LkL~PeHlA~~~~~---~k~~a~F 546 (644)
T KOG2395|consen 472 DAIKHVDVTAD-GKWILAT-CKTYLLLIDTLIKDGDYAGKTGFEKFMGNKIPKPKRLKLRPEHLAGIDNE---FKGTAKF 546 (644)
T ss_pred CceeeEEeecc-CcEEEEe-cccEEEEEEEecccCCccccccccccccccCCCceeeecCHHHhhhhhhh---ccCceeE
Confidence 78999999985 6666544 46677777765311 111 11112223333445556666542211 111 344
Q ss_pred c------CCCCEEEEEeCCCcEEEEECCC
Q 004477 288 S------PNGEEVLLSYSGEHVYLMDVNH 310 (751)
Q Consensus 288 s------pdg~~Ll~~s~d~~I~lwdl~~ 310 (751)
+ ...+. ++++....+..|++..
T Consensus 547 s~nTg~g~qE~t-IVtS~G~f~V~WnLd~ 574 (644)
T KOG2395|consen 547 SFNTGIGAQERT-IVTSTGPFSVSWNLDR 574 (644)
T ss_pred EEeccCCcceee-EEEeecceEEEEEhhH
Confidence 4 12233 4445566888899876
No 371
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=94.89 E-value=0.48 Score=46.60 Aligned_cols=111 Identities=11% Similarity=0.025 Sum_probs=82.9
Q ss_pred cCcchhHHHHHHHHHhhhcCCChhHHHHHhHHHHhcccCCCCCchhhhhHhHHHHHh-hcccccchhhhHHHhhHHHhcC
Q 004477 358 TGLGKCRMLVEIARNSLEEGKHPYYGIEACNEVLEGHLSGIGPMLRHECLCIRAALL-LKRKWKNDAQMAIRDCYNARRI 436 (751)
Q Consensus 358 ~~~~~~~~l~~~~~~~~~~g~~~~~ai~~~~~~i~~~~~~~~~~~~~~~~~~ra~~~-~~r~w~~d~y~al~d~~~a~~~ 436 (751)
..|+........+......+. +..|+..|..++...++. ...+.+.|.++ ...+-. +.-.|..-..+++++
T Consensus 68 ~~P~~~~~w~~Lg~~~~~~g~-~~~A~~a~~~Al~l~P~~------~~~~~~lA~aL~~~~g~~-~~~~A~~~l~~al~~ 139 (198)
T PRK10370 68 ANPQNSEQWALLGEYYLWRND-YDNALLAYRQALQLRGEN------AELYAALATVLYYQAGQH-MTPQTREMIDKALAL 139 (198)
T ss_pred HCCCCHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHhcCCC-CcHHHHHHHHHHHHh
Confidence 344555555555666666677 889999999999877665 45667777654 332211 123466667789999
Q ss_pred CCCCcchHHHHHHHHHHhcchHHHHHHHHHhcccCCCChh
Q 004477 437 DSSSFRAHLYMSEALEQLCKYKEALDFAIAAQCLDPSNSV 476 (751)
Q Consensus 437 ~~~~~~a~~~~~~~l~~l~~~~~a~~~~~~~~~~~p~~~~ 476 (751)
+|++..+++.++.+++.+|++.+|..+.+.+....|...+
T Consensus 140 dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~~~~~ 179 (198)
T PRK10370 140 DANEVTALMLLASDAFMQADYAQAIELWQKVLDLNSPRVN 179 (198)
T ss_pred CCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcc
Confidence 9999999999999999999999999999998888887554
No 372
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=94.66 E-value=1.2 Score=49.13 Aligned_cols=195 Identities=13% Similarity=0.150 Sum_probs=103.2
Q ss_pred CeEEEEecccCCcceEEEEEecCCCCcEEEEE---ECC-CcEEEEECCCCCCCCCCCCCCCCceeecccCCceeEEEEec
Q 004477 82 RKLLHSIETGHSANVFCTKFVPETSDELVVSG---AGD-AEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEV 157 (751)
Q Consensus 82 ~~~~~~l~~~h~~~V~~v~fsp~s~~~~l~sg---s~D-g~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp 157 (751)
+.....+ ..-...+..-+|+|+ ++.++-- ... ..+.++++..+.. ..+..+.++.. .-+|+|
T Consensus 182 g~~~~~l-~~~~~~~~~p~ws~~--~~~~~y~~f~~~~~~~i~~~~l~~g~~--------~~i~~~~g~~~---~P~fsp 247 (425)
T COG0823 182 GYNQQKL-TDSGSLILTPAWSPD--GKKLAYVSFELGGCPRIYYLDLNTGKR--------PVILNFNGNNG---APAFSP 247 (425)
T ss_pred CcceeEe-cccCcceeccccCcC--CCceEEEEEecCCCceEEEEeccCCcc--------ceeeccCCccC---CccCCC
Confidence 4444444 334456777889999 4544322 122 4589999987543 22334444443 468999
Q ss_pred CCCCEEEEEeCCCcEEE--EecCCCCCCCCCCCCCCccceEEEecccCceecccCCCCCccceEEEEEeCCCCcEEEEEe
Q 004477 158 GNPHVVWSASEDGTLRQ--HDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGG 235 (751)
Q Consensus 158 ~~~~~l~s~s~Dg~I~i--wDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs 235 (751)
++.+++++...||...+ +|+....... +. ... ..-..=.|+|++..++.+.+
T Consensus 248 DG~~l~f~~~rdg~~~iy~~dl~~~~~~~---------------Lt--------~~~---gi~~~Ps~spdG~~ivf~Sd 301 (425)
T COG0823 248 DGSKLAFSSSRDGSPDIYLMDLDGKNLPR---------------LT--------NGF---GINTSPSWSPDGSKIVFTSD 301 (425)
T ss_pred CCCEEEEEECCCCCccEEEEcCCCCccee---------------cc--------cCC---ccccCccCCCCCCEEEEEeC
Confidence 87778888888887554 5665544110 00 000 11113468996555555655
Q ss_pred CCCeEEEE--eCCCCCCccccCCCCCCCCccccccccccccCCccccceEEEEEcCCCCEEEEEeC-CCc--EEEEECCC
Q 004477 236 SDAFARLY--DRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYS-GEH--VYLMDVNH 310 (751)
Q Consensus 236 ~D~~Iriw--D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~vt~v~fspdg~~Ll~~s~-d~~--I~lwdl~~ 310 (751)
..|.-.|| |+..... +.... .+.. -..-.|||||++|+..+. +|. |.+.|+.+
T Consensus 302 r~G~p~I~~~~~~g~~~--------------~riT~-----~~~~---~~~p~~SpdG~~i~~~~~~~g~~~i~~~~~~~ 359 (425)
T COG0823 302 RGGRPQIYLYDLEGSQV--------------TRLTF-----SGGG---NSNPVWSPDGDKIVFESSSGGQWDIDKNDLAS 359 (425)
T ss_pred CCCCcceEEECCCCCce--------------eEeec-----cCCC---CcCccCCCCCCEEEEEeccCCceeeEEeccCC
Confidence 56654444 4443221 00000 0111 125679999999887764 344 77777777
Q ss_pred CCcceeeeecCCCceeEEeCCCCCCcccC
Q 004477 311 AGGRAMRYTVGDASKIMSFTPTLNGLELQ 339 (751)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~~sp~~~~~~~~ 339 (751)
+.. ..............+.|+...+.+.
T Consensus 360 ~~~-~~~lt~~~~~e~ps~~~ng~~i~~~ 387 (425)
T COG0823 360 GGK-IRILTSTYLNESPSWAPNGRMIMFS 387 (425)
T ss_pred CCc-EEEccccccCCCCCcCCCCceEEEe
Confidence 543 2222223333344455554444433
No 373
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=94.61 E-value=7.6 Score=42.47 Aligned_cols=231 Identities=13% Similarity=0.131 Sum_probs=130.1
Q ss_pred cEEEEEECCCCCEEEEEe-CCCcEEEEeCCCCeEEEEecccCCcceEEEEEecCCCCcEEEEEECCCcEEEEECCCCCCC
Q 004477 52 CVNAISWNSKGSLLISGS-DDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGR 130 (751)
Q Consensus 52 ~V~~l~~s~dg~~LaSgs-~Dg~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~Dg~V~vwd~~~~~~~ 130 (751)
....+...++|..+.... ....+.+-+.......... ..-...-..++.++.. .+.+++...+..|.+.|....
T Consensus 32 ~~~~v~~~~~g~~~~v~~~~~~~~~~~~~~~n~~~~~~-~~g~~~p~~i~v~~~~-~~vyv~~~~~~~v~vid~~~~--- 106 (381)
T COG3391 32 GPGGVAVNPDGTQVYVANSGSNDVSVIDATSNTVTQSL-SVGGVYPAGVAVNPAG-NKVYVTTGDSNTVSVIDTATN--- 106 (381)
T ss_pred CCceeEEcCccCEEEEEeecCceeeecccccceeeeec-cCCCccccceeeCCCC-CeEEEecCCCCeEEEEcCccc---
Confidence 455677888885433332 2224555555422222222 1111344567778773 346667777899999996643
Q ss_pred CCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEe--CCCcEEEEecCCCCCCCCCCCCCCccceEEEecccCceecc
Q 004477 131 GLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSAS--EDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSL 208 (751)
Q Consensus 131 ~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s--~Dg~I~iwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 208 (751)
....... -......++++|+++.+.++-. .++++.+.|..+.+... . ...
T Consensus 107 -------~~~~~~~-vG~~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~-------------~-~~v------ 158 (381)
T COG3391 107 -------TVLGSIP-VGLGPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTA-------------T-IPV------ 158 (381)
T ss_pred -------ceeeEee-eccCCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEE-------------E-Eec------
Confidence 1122222 1225678999997766766666 47888888877765320 0 000
Q ss_pred cCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCccccCCCCCCCCccccccccccccCCccccceEEEEEc
Q 004477 209 ADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFS 288 (751)
Q Consensus 209 ~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~vt~v~fs 288 (751)
...+ ..++++|++...+++-..++.|.+.|........ -. +...... ......+.++
T Consensus 159 -----G~~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~-~~-------------~~~~~~~---~~~P~~i~v~ 215 (381)
T COG3391 159 -----GNTP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVR-GS-------------VGSLVGV---GTGPAGIAVD 215 (381)
T ss_pred -----CCCc-ceEEECCCCCeEEEEecCCCeEEEEeCCCcceec-cc-------------ccccccc---CCCCceEEEC
Confidence 1122 7889999654455555689999999976543321 00 0000000 1124678999
Q ss_pred CCCCEEEEEeCC---CcEEEEECCCCCcceeeeecCC-CceeEEeCCCCCCccc
Q 004477 289 PNGEEVLLSYSG---EHVYLMDVNHAGGRAMRYTVGD-ASKIMSFTPTLNGLEL 338 (751)
Q Consensus 289 pdg~~Ll~~s~d---~~I~lwdl~~~~~~~~~~~~~~-~~~~~~~sp~~~~~~~ 338 (751)
|+|+++.+.... +.+...|..++.........+. ....+.+.|+..-...
T Consensus 216 ~~g~~~yV~~~~~~~~~v~~id~~~~~v~~~~~~~~~~~~~~v~~~p~g~~~yv 269 (381)
T COG3391 216 PDGNRVYVANDGSGSNNVLKIDTATGNVTATDLPVGSGAPRGVAVDPAGKAAYV 269 (381)
T ss_pred CCCCEEEEEeccCCCceEEEEeCCCceEEEeccccccCCCCceeECCCCCEEEE
Confidence 999977766553 5899999888543333222222 3455666666554443
No 374
>PRK02888 nitrous-oxide reductase; Validated
Probab=94.44 E-value=1.4 Score=50.16 Aligned_cols=84 Identities=14% Similarity=0.173 Sum_probs=54.3
Q ss_pred ceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCccccCCCCCCCCccccccccccccCCccccceEEEEEcCCCCEEEE
Q 004477 217 SLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLL 296 (751)
Q Consensus 217 ~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~vt~v~fspdg~~Ll~ 296 (751)
....++++|++...++++..+.+|.|+|+.+.+..-. ....+..++....+. +......+|+++|+...+
T Consensus 322 sPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~--~~~~~~~~vvaevev--------GlGPLHTaFDg~G~ayts 391 (635)
T PRK02888 322 NPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFD--GKIKPRDAVVAEPEL--------GLGPLHTAFDGRGNAYTT 391 (635)
T ss_pred CccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhh--ccCCccceEEEeecc--------CCCcceEEECCCCCEEEe
Confidence 4567899997555566666799999999998663211 111111122111111 112456789999987777
Q ss_pred EeCCCcEEEEECCC
Q 004477 297 SYSGEHVYLMDVNH 310 (751)
Q Consensus 297 ~s~d~~I~lwdl~~ 310 (751)
-.-|.+|-.||+..
T Consensus 392 lf~dsqv~kwn~~~ 405 (635)
T PRK02888 392 LFLDSQIVKWNIEA 405 (635)
T ss_pred EeecceeEEEehHH
Confidence 77899999999987
No 375
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=94.40 E-value=1.7 Score=50.12 Aligned_cols=109 Identities=13% Similarity=0.109 Sum_probs=65.9
Q ss_pred CCCCCEEEEEeCCC------cEEEEeCCCCeEEEEecccCCcceEEEEEecCCCCcEEEEEECC------CcEEEEECCC
Q 004477 59 NSKGSLLISGSDDT------HINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGD------AEVRLFNLSR 126 (751)
Q Consensus 59 s~dg~~LaSgs~Dg------~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~D------g~V~vwd~~~ 126 (751)
+..+.+++.||.++ .+..+|..++.........+...-.+++...+ .+.++|+.| .++..||...
T Consensus 282 ~~~~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~~~r~~~~~~~~~~---~lYv~GG~~~~~~~l~~ve~YD~~~ 358 (571)
T KOG4441|consen 282 SVSGKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMPSPRCRVGVAVLNG---KLYVVGGYDSGSDRLSSVERYDPRT 358 (571)
T ss_pred CCCCeEEEECCCCCCCcccceeEEecCCcCcEeecCCCCcccccccEEEECC---EEEEEccccCCCcccceEEEecCCC
Confidence 34567888888774 57788988775444332335555667777754 788899988 3466777775
Q ss_pred CCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCCc-----EEEEecCCCC
Q 004477 127 FSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGT-----LRQHDFRQGS 181 (751)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~-----I~iwDlr~~~ 181 (751)
.+- ..+..+...........+ ++.+.+.||.||. |-.||.++.+
T Consensus 359 ~~W--------~~~a~M~~~R~~~~v~~l---~g~iYavGG~dg~~~l~svE~YDp~~~~ 407 (571)
T KOG4441|consen 359 NQW--------TPVAPMNTKRSDFGVAVL---DGKLYAVGGFDGEKSLNSVECYDPVTNK 407 (571)
T ss_pred Cce--------eccCCccCccccceeEEE---CCEEEEEeccccccccccEEEecCCCCc
Confidence 432 122222222222222222 6789999999974 5566666543
No 376
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=94.36 E-value=0.9 Score=50.40 Aligned_cols=143 Identities=18% Similarity=0.192 Sum_probs=76.8
Q ss_pred CCcceEEEEEecCCCCcEEEEEECCCcEEEEECCCCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCCc
Q 004477 92 HSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGT 171 (751)
Q Consensus 92 h~~~V~~v~fsp~s~~~~l~sgs~Dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~ 171 (751)
..-....+.++|+ |++++. +.||.-.|+.... ... ...+.-...+|.+ . ..+++-...++
T Consensus 31 ~~~~p~~ls~npn--gr~v~V-~g~geY~iyt~~~-------------~r~--k~~G~g~~~vw~~-~-n~yAv~~~~~~ 90 (443)
T PF04053_consen 31 CEIYPQSLSHNPN--GRFVLV-CGDGEYEIYTALA-------------WRN--KAFGSGLSFVWSS-R-NRYAVLESSST 90 (443)
T ss_dssp -SS--SEEEE-TT--SSEEEE-EETTEEEEEETTT-------------TEE--EEEEE-SEEEE-T-S-SEEEEE-TTS-
T ss_pred CCcCCeeEEECCC--CCEEEE-EcCCEEEEEEccC-------------Ccc--cccCceeEEEEec-C-ccEEEEECCCe
Confidence 3445789999998 788888 4577777777332 111 1234456788987 3 45667777889
Q ss_pred EEEE-ecCCCCCCCCCCCCCCccceEEEecccCceecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCC
Q 004477 172 LRQH-DFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPP 250 (751)
Q Consensus 172 I~iw-Dlr~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~ 250 (751)
|.++ ++.... ... + ..+...-.+.+ |.+|.+.+.+ .|.+||..+.+.
T Consensus 91 I~I~kn~~~~~-~k~----------------------i------~~~~~~~~If~--G~LL~~~~~~-~i~~yDw~~~~~ 138 (443)
T PF04053_consen 91 IKIYKNFKNEV-VKS----------------------I------KLPFSVEKIFG--GNLLGVKSSD-FICFYDWETGKL 138 (443)
T ss_dssp EEEEETTEE-T-T---------------------------------SS-EEEEE---SSSEEEEETT-EEEEE-TTT--E
T ss_pred EEEEEcCcccc-ceE----------------------E------cCCcccceEEc--CcEEEEECCC-CEEEEEhhHcce
Confidence 9996 442221 000 0 00111112222 5667766655 899999998776
Q ss_pred ccccCCCCCCCCccccccccccccCCccccceEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 004477 251 LTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNH 310 (751)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~vt~v~fspdg~~Ll~~s~d~~I~lwdl~~ 310 (751)
+..+.. . +|..|.|+++|.+++..+.+ .++|++.+.
T Consensus 139 i~~i~v----------------------~-~vk~V~Ws~~g~~val~t~~-~i~il~~~~ 174 (443)
T PF04053_consen 139 IRRIDV----------------------S-AVKYVIWSDDGELVALVTKD-SIYILKYNL 174 (443)
T ss_dssp EEEESS------------------------E-EEEEE-TTSSEEEEE-S--SEEEEEE-H
T ss_pred eeEEec----------------------C-CCcEEEEECCCCEEEEEeCC-eEEEEEecc
Confidence 544321 1 37899999999998888754 788877555
No 377
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=94.29 E-value=0.13 Score=50.21 Aligned_cols=107 Identities=16% Similarity=0.156 Sum_probs=60.7
Q ss_pred CCEEEEEeCCCcEEEEeCCCCeEEEEecccCCcceEEEEEecCCCCcEEEEEECCCcEEEEECCCCCCCCCCCCCCCCce
Q 004477 62 GSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSA 141 (751)
Q Consensus 62 g~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~Dg~V~vwd~~~~~~~~~~~~~~~~~~ 141 (751)
+..|+.|+.||.|.+|+.............-...|.+. +.....+.+..+++.|+.|+.|++... +.+.
T Consensus 70 ~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~-Ip~~~~~~~~c~~~~dg~ir~~n~~p~----------k~~g 138 (238)
T KOG2444|consen 70 SAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLG-IPNGRDSSLGCVGAQDGRIRACNIKPN----------KVLG 138 (238)
T ss_pred CceEEeecccceEEEecCCccchHHHhhhcccccceec-cccccccceeEEeccCCceeeeccccC----------ceee
Confidence 45789999999999999762211111111112222222 222211458899999999999999853 2234
Q ss_pred eecccC-CceeEEEEecCCCCEEEEE--eCCCcEEEEecCCC
Q 004477 142 LYQCHT-RRVKKLAVEVGNPHVVWSA--SEDGTLRQHDFRQG 180 (751)
Q Consensus 142 ~~~~h~-~~V~~l~~sp~~~~~l~s~--s~Dg~I~iwDlr~~ 180 (751)
....|+ ..+..+..+. ...+++++ |.|..++.|++..-
T Consensus 139 ~~g~h~~~~~e~~ivv~-sd~~i~~a~~S~d~~~k~W~ve~~ 179 (238)
T KOG2444|consen 139 YVGQHNFESGEELIVVG-SDEFLKIADTSHDRVLKKWNVEKI 179 (238)
T ss_pred eeccccCCCcceeEEec-CCceEEeeccccchhhhhcchhhh
Confidence 444555 3444444443 33455555 56666666666543
No 378
>PHA02713 hypothetical protein; Provisional
Probab=94.09 E-value=1.8 Score=49.86 Aligned_cols=64 Identities=8% Similarity=0.195 Sum_probs=33.9
Q ss_pred CCCEEEEEeCC------CcEEEEeCCCCeEEEEecccCCcceEEEEEecCCCCcEEEEEECCC-----cEEEEECCCC
Q 004477 61 KGSLLISGSDD------THINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDA-----EVRLFNLSRF 127 (751)
Q Consensus 61 dg~~LaSgs~D------g~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~Dg-----~V~vwd~~~~ 127 (751)
++.+.+.||.+ ..+..||+.+......-.......-.+++.. + |.+.+.||.++ +|..||..+.
T Consensus 303 ~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~~~~~~-~--g~IYviGG~~~~~~~~sve~Ydp~~~ 377 (557)
T PHA02713 303 DNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRFSLAVI-D--DTIYAIGGQNGTNVERTIECYTMGDD 377 (557)
T ss_pred CCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhceeEEEE-C--CEEEEECCcCCCCCCceEEEEECCCC
Confidence 56677777753 2366778776543211100111111223322 2 57778887764 4788998753
No 379
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=94.01 E-value=6.2 Score=44.77 Aligned_cols=63 Identities=10% Similarity=0.086 Sum_probs=42.0
Q ss_pred CCEEEEEeCCCcEEEEeCCCCeEEEEecccCC-----cceEE--EEEecCCCCcEEEEEECCCcEEEEECCCC
Q 004477 62 GSLLISGSDDTHINVWSYSSRKLLHSIETGHS-----ANVFC--TKFVPETSDELVVSGAGDAEVRLFNLSRF 127 (751)
Q Consensus 62 g~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~-----~~V~~--v~fsp~s~~~~l~sgs~Dg~V~vwd~~~~ 127 (751)
+..+..++.++.|.-.|..+|+.+..+..... ..+.. +... + +..++.++.++.|.-+|..++
T Consensus 61 ~g~vy~~~~~g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~~-~--~~~V~v~~~~g~v~AlD~~TG 130 (488)
T cd00216 61 DGDMYFTTSHSALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAYW-D--PRKVFFGTFDGRLVALDAETG 130 (488)
T ss_pred CCEEEEeCCCCcEEEEECCCChhhceeCCCCCccccccccccCCcEEc-c--CCeEEEecCCCeEEEEECCCC
Confidence 44566777889999999999998877633221 00110 1111 1 257788888999999999875
No 380
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.94 E-value=5 Score=40.78 Aligned_cols=223 Identities=15% Similarity=0.215 Sum_probs=123.0
Q ss_pred EEEECCCC-CEEEEEeCCCc-EEEEeCCCCeEEEEec-------ccCCcceEEEEEecCCCCcEEEEEECC-----CcEE
Q 004477 55 AISWNSKG-SLLISGSDDTH-INVWSYSSRKLLHSIE-------TGHSANVFCTKFVPETSDELVVSGAGD-----AEVR 120 (751)
Q Consensus 55 ~l~~s~dg-~~LaSgs~Dg~-I~IWd~~~~~~~~~l~-------~~h~~~V~~v~fsp~s~~~~l~sgs~D-----g~V~ 120 (751)
.|.|+|.. .-++-+-.-|+ ..++|....+.+.++. -||. .|+|+ |.+|+..-.| |.|-
T Consensus 72 gi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHG------vfs~d--G~~LYATEndfd~~rGViG 143 (366)
T COG3490 72 GIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHG------VFSPD--GRLLYATENDFDPNRGVIG 143 (366)
T ss_pred CeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCceeeccc------ccCCC--CcEEEeecCCCCCCCceEE
Confidence 56777743 34555555555 5678888776655542 2443 48999 8888876554 6799
Q ss_pred EEECCCCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCCcEEEE-ecCCCCCCCCCCCCCCccceEEEe
Q 004477 121 LFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQH-DFRQGSSCPPAGSSHQECRNILLD 199 (751)
Q Consensus 121 vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iw-Dlr~~~~~~~~~~~~~~~~~~l~~ 199 (751)
|||.+.. +..+-.+..|.-....+.|.+ ++.+++.+ .|-|... |...-+ ......+..-++.+
T Consensus 144 vYd~r~~---------fqrvgE~~t~GiGpHev~lm~-DGrtlvva--nGGIethpdfgR~~----lNldsMePSlvlld 207 (366)
T COG3490 144 VYDAREG---------FQRVGEFSTHGIGPHEVTLMA-DGRTLVVA--NGGIETHPDFGRTE----LNLDSMEPSLVLLD 207 (366)
T ss_pred EEecccc---------cceecccccCCcCcceeEEec-CCcEEEEe--CCceecccccCccc----cchhhcCccEEEEe
Confidence 9999853 244667888888888899999 56766544 3555555 332211 01112233456777
Q ss_pred cccCceecccCCC--CCccceEEEEEeCCCCcEEEEEeC-CCeEEEEeCCCCCCccccCCCCCCCCccccccccccccCC
Q 004477 200 LRCGAKRSLADPP--KQTLSLKSCDISSTRPHLLLVGGS-DAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHG 276 (751)
Q Consensus 200 ~~~~~~~~~~~~~--~~~~~v~~i~~sp~~~~~l~sgs~-D~~IriwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 276 (751)
..+|........+ .+...+..++..++ +.. ..|+. .|. .....++-- ...+...++.+.........
T Consensus 208 ~atG~liekh~Lp~~l~~lSiRHld~g~d-gtv-wfgcQy~G~-----~~d~ppLvg---~~~~g~~l~~~~~pee~~~~ 277 (366)
T COG3490 208 AATGNLIEKHTLPASLRQLSIRHLDIGRD-GTV-WFGCQYRGP-----RNDLPPLVG---HFRKGEPLEFLDLPEEQTAA 277 (366)
T ss_pred ccccchhhhccCchhhhhcceeeeeeCCC-CcE-EEEEEeeCC-----CccCCccee---eccCCCcCcccCCCHHHHHH
Confidence 6777665555555 56677888888884 333 33332 110 011111000 00000011111000000001
Q ss_pred ccccceEEEEEcCCCCEEEEEeC-CCcEEEEECCCCC
Q 004477 277 RSSLHLTHVTFSPNGEEVLLSYS-GEHVYLMDVNHAG 312 (751)
Q Consensus 277 ~~~~~vt~v~fspdg~~Ll~~s~-d~~I~lwdl~~~~ 312 (751)
-.+ .|-+|+.+.+...++..+- .+...+||..++.
T Consensus 278 ~an-YigsiA~n~~~glV~lTSP~GN~~vi~da~tG~ 313 (366)
T COG3490 278 FAN-YIGSIAANRRDGLVALTSPRGNRAVIWDAATGA 313 (366)
T ss_pred HHh-hhhheeecccCCeEEEecCCCCeEEEEEcCCCc
Confidence 112 3778888876666665554 6788899999964
No 381
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.91 E-value=0.12 Score=60.54 Aligned_cols=88 Identities=28% Similarity=0.474 Sum_probs=60.2
Q ss_pred hhccccccEEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEecccCCcceEEEEEecC-CCCcEEEEEE
Q 004477 36 LVRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPE-TSDELVVSGA 114 (751)
Q Consensus 36 ~i~~~~~~~~L~gH~~~V~~l~~s~dg~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~-s~~~~l~sgs 114 (751)
....+++.+.=..-.++|++++|+.+|++|+.|-.+|.|.+||+.+++.++.+ ..|..++..+-++-- +.+..++++.
T Consensus 116 ~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i-~e~~ap~t~vi~v~~t~~nS~llt~D 194 (1206)
T KOG2079|consen 116 MTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVI-TEHGAPVTGVIFVGRTSQNSKLLTSD 194 (1206)
T ss_pred hhcccchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeee-eecCCccceEEEEEEeCCCcEEEEcc
Confidence 33344443332334679999999999999999999999999999998888777 555544444433321 1145788877
Q ss_pred CCCcEEEEECCC
Q 004477 115 GDAEVRLFNLSR 126 (751)
Q Consensus 115 ~Dg~V~vwd~~~ 126 (751)
.-|. +|.+.-
T Consensus 195 ~~Gs--f~~lv~ 204 (1206)
T KOG2079|consen 195 TGGS--FWKLVF 204 (1206)
T ss_pred CCCc--eEEEEe
Confidence 7776 666653
No 382
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=93.61 E-value=3.1 Score=49.09 Aligned_cols=99 Identities=15% Similarity=0.161 Sum_probs=61.7
Q ss_pred CccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCccccCCCCCCCCccccccccccccCCccccceEEEEEcCC---
Q 004477 214 QTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPN--- 290 (751)
Q Consensus 214 ~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~vt~v~fspd--- 290 (751)
-...|..|.+||. +.+++..|..+.+.+.=.+.......+........|-.......+.. .+....|..+.|+|.
T Consensus 83 ~~f~v~~i~~n~~-g~~lal~G~~~v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~-~~~~~~i~qv~WhP~s~~ 160 (717)
T PF10168_consen 83 PLFEVHQISLNPT-GSLLALVGPRGVVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFT-SNSSLEIKQVRWHPWSES 160 (717)
T ss_pred CceeEEEEEECCC-CCEEEEEcCCcEEEEEeccccCccccccCCCcceeEEEEEechhhcc-CCCCceEEEEEEcCCCCC
Confidence 3468999999995 78888888876655544433221222222222223332222222222 233446999999996
Q ss_pred CCEEEEEeCCCcEEEEECCCCCcc
Q 004477 291 GEEVLLSYSGEHVYLMDVNHAGGR 314 (751)
Q Consensus 291 g~~Ll~~s~d~~I~lwdl~~~~~~ 314 (751)
+..|++=++|+.+++||+.....+
T Consensus 161 ~~~l~vLtsdn~lR~y~~~~~~~p 184 (717)
T PF10168_consen 161 DSHLVVLTSDNTLRLYDISDPQHP 184 (717)
T ss_pred CCeEEEEecCCEEEEEecCCCCCC
Confidence 589999999999999999875433
No 383
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=93.51 E-value=5 Score=42.66 Aligned_cols=123 Identities=18% Similarity=0.220 Sum_probs=78.2
Q ss_pred cccccEEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCe-EEEEecccCCcceEEEEEecCCCCcEEEEEECCC
Q 004477 39 RLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRK-LLHSIETGHSANVFCTKFVPETSDELVVSGAGDA 117 (751)
Q Consensus 39 ~~~~~~~L~gH~~~V~~l~~s~dg~~LaSgs~Dg~I~IWd~~~~~-~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~Dg 117 (751)
+++.++... ..++|++|+-- .|. |+.|.. +.|.+|++...+ ....-.......|.++... +++|+.|..-.
T Consensus 78 ~l~~i~~~~-~~g~V~ai~~~-~~~-lv~~~g-~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~~----~~~I~vgD~~~ 149 (321)
T PF03178_consen 78 KLKLIHSTE-VKGPVTAICSF-NGR-LVVAVG-NKLYVYDLDNSKTLLKKAFYDSPFYITSLSVF----KNYILVGDAMK 149 (321)
T ss_dssp EEEEEEEEE-ESS-EEEEEEE-TTE-EEEEET-TEEEEEEEETTSSEEEEEEE-BSSSEEEEEEE----TTEEEEEESSS
T ss_pred EEEEEEEEe-ecCcceEhhhh-CCE-EEEeec-CEEEEEEccCcccchhhheecceEEEEEEecc----ccEEEEEEccc
Confidence 566665554 47899998877 444 444443 689999998776 4433212233356666665 45899999888
Q ss_pred cEEEEECCCCCCCCCCCCCCCCceee--cccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCC
Q 004477 118 EVRLFNLSRFSGRGLDDNAITPSALY--QCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQ 179 (751)
Q Consensus 118 ~V~vwd~~~~~~~~~~~~~~~~~~~~--~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~ 179 (751)
.|.++...... ..+..+ ......++++.|-+++ ..++.+..+|.|.++....
T Consensus 150 sv~~~~~~~~~---------~~l~~va~d~~~~~v~~~~~l~d~-~~~i~~D~~gnl~~l~~~~ 203 (321)
T PF03178_consen 150 SVSLLRYDEEN---------NKLILVARDYQPRWVTAAEFLVDE-DTIIVGDKDGNLFVLRYNP 203 (321)
T ss_dssp SEEEEEEETTT---------E-EEEEEEESS-BEEEEEEEE-SS-SEEEEEETTSEEEEEEE-S
T ss_pred CEEEEEEEccC---------CEEEEEEecCCCccEEEEEEecCC-cEEEEEcCCCeEEEEEECC
Confidence 89888665311 112222 2235568888888645 5888999999999998764
No 384
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=93.41 E-value=11 Score=42.70 Aligned_cols=65 Identities=12% Similarity=0.176 Sum_probs=39.0
Q ss_pred CEEEEEeCCCcEEEEeCCCCeEEEEecccCCc-ceEEEEEecCCCCcEEEEEE---------CCCcEEEEECCCC
Q 004477 63 SLLISGSDDTHINVWSYSSRKLLHSIETGHSA-NVFCTKFVPETSDELVVSGA---------GDAEVRLFNLSRF 127 (751)
Q Consensus 63 ~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~-~V~~v~fsp~s~~~~l~sgs---------~Dg~V~vwd~~~~ 127 (751)
..+..++.|+.|.-+|..+|+.+..+...-.. .-..+.-+|.-.+.+++.++ .++.|..+|..++
T Consensus 111 ~~V~v~~~~g~v~AlD~~TG~~~W~~~~~~~~~~~~~i~ssP~v~~~~v~vg~~~~~~~~~~~~g~v~alD~~TG 185 (488)
T cd00216 111 RKVFFGTFDGRLVALDAETGKQVWKFGNNDQVPPGYTMTGAPTIVKKLVIIGSSGAEFFACGVRGALRAYDVETG 185 (488)
T ss_pred CeEEEecCCCeEEEEECCCCCEeeeecCCCCcCcceEecCCCEEECCEEEEeccccccccCCCCcEEEEEECCCC
Confidence 57777888999999999999998877332110 00111222221123454443 3677888888765
No 385
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=93.32 E-value=0.19 Score=49.04 Aligned_cols=67 Identities=12% Similarity=0.058 Sum_probs=40.3
Q ss_pred CCCEEEEEeCCCcEEEEecCCCCCCCCCCCCCCccceEEEecccCceecccCCCCCccceEEEEEeCCCCcEEEEEeCCC
Q 004477 159 NPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDA 238 (751)
Q Consensus 159 ~~~~l~s~s~Dg~I~iwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~ 238 (751)
....++.|+.||.|.+|........ .+ .. ......+-++--+-+++.+..+++.|+
T Consensus 69 ~~~~~~vG~~dg~v~~~n~n~~g~~-------~d-------~~----------~s~~e~i~~~Ip~~~~~~~~c~~~~dg 124 (238)
T KOG2444|consen 69 ASAKLMVGTSDGAVYVFNWNLEGAH-------SD-------RV----------CSGEESIDLGIPNGRDSSLGCVGAQDG 124 (238)
T ss_pred cCceEEeecccceEEEecCCccchH-------HH-------hh----------hcccccceeccccccccceeEEeccCC
Confidence 4467889999999999987632100 00 00 001112222222333456899999999
Q ss_pred eEEEEeCCCCC
Q 004477 239 FARLYDRRMLP 249 (751)
Q Consensus 239 ~IriwD~~~~~ 249 (751)
.||.|++.-.+
T Consensus 125 ~ir~~n~~p~k 135 (238)
T KOG2444|consen 125 RIRACNIKPNK 135 (238)
T ss_pred ceeeeccccCc
Confidence 99999987543
No 386
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=93.24 E-value=7.9 Score=40.84 Aligned_cols=219 Identities=13% Similarity=0.130 Sum_probs=115.4
Q ss_pred EEEEECCCCCEEEEEe--CCCcEEEEeCCCCeEEEEecccCCcceEEEEEecCCCCcEEEEEECCCcEEEEECCCCCCCC
Q 004477 54 NAISWNSKGSLLISGS--DDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRG 131 (751)
Q Consensus 54 ~~l~~s~dg~~LaSgs--~Dg~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~Dg~V~vwd~~~~~~~~ 131 (751)
+.++++.||+++.... =-..|.|-|+..++.+..+... + |.-.-|.. ++-|.+-+.||++.-..+... |+.
T Consensus 98 ~~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~P--G---C~~iyP~~-~~~F~~lC~DGsl~~v~Ld~~-Gk~ 170 (342)
T PF06433_consen 98 NMFALSADGKFLYVQNFTPATSVTVVDLAAKKVVGEIDTP--G---CWLIYPSG-NRGFSMLCGDGSLLTVTLDAD-GKE 170 (342)
T ss_dssp GGEEE-TTSSEEEEEEESSSEEEEEEETTTTEEEEEEEGT--S---EEEEEEEE-TTEEEEEETTSCEEEEEETST-SSE
T ss_pred cceEEccCCcEEEEEccCCCCeEEEEECCCCceeeeecCC--C---EEEEEecC-CCceEEEecCCceEEEEECCC-CCE
Confidence 3467888888777653 3456888898888888777322 2 22233432 356888899999999998852 221
Q ss_pred CCCCCCCCceeecccCCce-eEEEEecCCCCEEEEEeCCCcEEEEecCCCCCCCCCCCCCCccceEEEecccCceecccC
Q 004477 132 LDDNAITPSALYQCHTRRV-KKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLAD 210 (751)
Q Consensus 132 ~~~~~~~~~~~~~~h~~~V-~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 210 (751)
. .+....|..-.+++ ..-++.. .+..++--+..|.|+.-|+...... ...-|.+.+.... .
T Consensus 171 ~----~~~t~~F~~~~dp~f~~~~~~~-~~~~~~F~Sy~G~v~~~dlsg~~~~----------~~~~~~~~t~~e~---~ 232 (342)
T PF06433_consen 171 A----QKSTKVFDPDDDPLFEHPAYSR-DGGRLYFVSYEGNVYSADLSGDSAK----------FGKPWSLLTDAEK---A 232 (342)
T ss_dssp E----EEEEEESSTTTS-B-S--EEET-TTTEEEEEBTTSEEEEEEETTSSEE----------EEEEEESS-HHHH---H
T ss_pred e----EeeccccCCCCcccccccceEC-CCCeEEEEecCCEEEEEeccCCccc----------ccCcccccCcccc---c
Confidence 0 01111222222322 2223433 3334445788999999998775411 0111222110000 0
Q ss_pred CCCCccceEEEEEeCCCCcEEEEEeC-------C--CeEEEEeCCCCCCccccCCCCCCCCccccccccccccCCccccc
Q 004477 211 PPKQTLSLKSCDISSTRPHLLLVGGS-------D--AFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLH 281 (751)
Q Consensus 211 ~~~~~~~v~~i~~sp~~~~~l~sgs~-------D--~~IriwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 281 (751)
..-....-.-+++++..+++++.-.. | ..|-+||+.+.+.+..+. + ..+
T Consensus 233 ~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~----------------l------~~~ 290 (342)
T PF06433_consen 233 DGWRPGGWQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIP----------------L------EHP 290 (342)
T ss_dssp TTEEE-SSS-EEEETTTTEEEEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEE----------------E------EEE
T ss_pred cCcCCcceeeeeeccccCeEEEEecCCCCCCccCCceEEEEEECCCCeEEEEEe----------------C------CCc
Confidence 00011223346777754444433221 1 247777887765443321 1 114
Q ss_pred eEEEEEcCCCC-EEEEE-eCCCcEEEEECCCCCcceeeee
Q 004477 282 LTHVTFSPNGE-EVLLS-YSGEHVYLMDVNHAGGRAMRYT 319 (751)
Q Consensus 282 vt~v~fspdg~-~Ll~~-s~d~~I~lwdl~~~~~~~~~~~ 319 (751)
+.+|..+.+.+ +|++. ..++.+.+||..+++.......
T Consensus 291 ~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~~~~~~~ 330 (342)
T PF06433_consen 291 IDSIAVSQDDKPLLYALSAGDGTLDVYDAATGKLVRSIEQ 330 (342)
T ss_dssp ESEEEEESSSS-EEEEEETTTTEEEEEETTT--EEEEE--
T ss_pred cceEEEccCCCcEEEEEcCCCCeEEEEeCcCCcEEeehhc
Confidence 77899999887 55444 4578999999999765544443
No 387
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.06 E-value=0.98 Score=49.33 Aligned_cols=133 Identities=14% Similarity=0.096 Sum_probs=91.3
Q ss_pred ccchhhhccccccEEeccCCCcEEEEEECCCCC--EE-----EEEeCCCcEEEEeCCC-CeEEEEecccC----CcceEE
Q 004477 31 QMHSSLVRRLSQERELEGHQGCVNAISWNSKGS--LL-----ISGSDDTHINVWSYSS-RKLLHSIETGH----SANVFC 98 (751)
Q Consensus 31 ~~~~~~i~~~~~~~~L~gH~~~V~~l~~s~dg~--~L-----aSgs~Dg~I~IWd~~~-~~~~~~l~~~h----~~~V~~ 98 (751)
.++...|.+.+.+.+.+-|.+ |+-+.+.|+++ .| +.|=.|..|.-||+.- ++-......+| ..+..|
T Consensus 357 ~l~klDIE~GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~q~kqy~~k~nFsc 435 (644)
T KOG2395|consen 357 KLYKLDIERGKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVVQSKQYSTKNNFSC 435 (644)
T ss_pred cceeeecccceeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeeeeccccccccccce
Confidence 455567899999999998887 88999998653 22 3455788999999862 22111121333 234455
Q ss_pred EEEecCCCCcEEEEEECCCcEEEEECCCCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEecC
Q 004477 99 TKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFR 178 (751)
Q Consensus 99 v~fsp~s~~~~l~sgs~Dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr 178 (751)
.+-.. .-+||.||.+|.||+||--.. .....+.+-..+|+.|..+. +|..|+ |..+..+.+.|+.
T Consensus 436 ~aTT~---sG~IvvgS~~GdIRLYdri~~----------~AKTAlPgLG~~I~hVdvta-dGKwil-~Tc~tyLlLi~t~ 500 (644)
T KOG2395|consen 436 FATTE---SGYIVVGSLKGDIRLYDRIGR----------RAKTALPGLGDAIKHVDVTA-DGKWIL-ATCKTYLLLIDTL 500 (644)
T ss_pred eeecC---CceEEEeecCCcEEeehhhhh----------hhhhcccccCCceeeEEeec-cCcEEE-EecccEEEEEEEe
Confidence 54443 358999999999999998421 33556788899999999998 455543 3445678887775
Q ss_pred C
Q 004477 179 Q 179 (751)
Q Consensus 179 ~ 179 (751)
-
T Consensus 501 ~ 501 (644)
T KOG2395|consen 501 I 501 (644)
T ss_pred c
Confidence 4
No 388
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=92.99 E-value=0.69 Score=45.69 Aligned_cols=110 Identities=17% Similarity=0.073 Sum_probs=84.4
Q ss_pred hHHHHHHHHHhhhcCCChhHHHHHhHHHHhcccCC-----CCCchh-------hhhHhHHHHHhhcccccchhhhHHHhh
Q 004477 363 CRMLVEIARNSLEEGKHPYYGIEACNEVLEGHLSG-----IGPMLR-------HECLCIRAALLLKRKWKNDAQMAIRDC 430 (751)
Q Consensus 363 ~~~l~~~~~~~~~~g~~~~~ai~~~~~~i~~~~~~-----~~~~~~-------~~~~~~ra~~~~~r~w~~d~y~al~d~ 430 (751)
+..|.+.+|..+..|. |..|+..|.++|.-..+- ++..-| -+++.|-+-.+++ .+|.|.++.-|
T Consensus 178 v~~l~q~GN~lfk~~~-ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~---~~e~yevleh~ 253 (329)
T KOG0545|consen 178 VPVLHQEGNRLFKLGR-YKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLK---KEEYYEVLEHC 253 (329)
T ss_pred hHHHHHhhhhhhhhcc-HHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhh---HHHHHHHHHHH
Confidence 4556778888887777 889999999887644331 222222 2355565555554 57899999999
Q ss_pred HHHhcCCCCCcchHHHHHHHHHHhcchHHHHHHHHHhcccCCCChh
Q 004477 431 YNARRIDSSSFRAHLYMSEALEQLCKYKEALDFAIAAQCLDPSNSV 476 (751)
Q Consensus 431 ~~a~~~~~~~~~a~~~~~~~l~~l~~~~~a~~~~~~~~~~~p~~~~ 476 (751)
...+.++|..+||+|+.++|-...=...+|..-+..+....|+-+.
T Consensus 254 seiL~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldpslas 299 (329)
T KOG0545|consen 254 SEILRHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPSLAS 299 (329)
T ss_pred HHHHhcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChhhHH
Confidence 9999999999999999999999999999999888888888886543
No 389
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=92.97 E-value=0.12 Score=40.84 Aligned_cols=52 Identities=29% Similarity=0.262 Sum_probs=45.1
Q ss_pred chhhhHHHhhHHHhcCCCCCcchHHHHHHHHHHhc-chHHHHHHHHHhcccCC
Q 004477 421 NDAQMAIRDCYNARRIDSSSFRAHLYMSEALEQLC-KYKEALDFAIAAQCLDP 472 (751)
Q Consensus 421 ~d~y~al~d~~~a~~~~~~~~~a~~~~~~~l~~l~-~~~~a~~~~~~~~~~~p 472 (751)
++.-.|+....+++.++|.+..+++.++.|+..++ ++.+|+.+++....+.|
T Consensus 17 ~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 17 GDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp THHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred CCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 34557889999999999999999999999999999 79999998887765544
No 390
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=92.87 E-value=2.4 Score=48.59 Aligned_cols=122 Identities=13% Similarity=0.108 Sum_probs=78.7
Q ss_pred cEEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEecccCCcceEEEEEecCCCCcEEEEEECCCcEEEEECCCCCCCC
Q 004477 52 CVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRG 131 (751)
Q Consensus 52 ~V~~l~~s~dg~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~Dg~V~vwd~~~~~~~~ 131 (751)
...-+.-|.-++.-+.-+.-..+.|||...+.....-.-...+.|.++.|....+++.+++.|..+.|.++--...+...
T Consensus 31 ~~~li~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~~ 110 (631)
T PF12234_consen 31 NPSLISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYTN 110 (631)
T ss_pred CcceEeecccCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhhc
Confidence 34444455555544454555679999999887655442355789999999877778999999999999999654211100
Q ss_pred CCCCCCCCceee--cccC-CceeEEEEecCCCCEEEEEeCCCcEEEEec
Q 004477 132 LDDNAITPSALY--QCHT-RRVKKLAVEVGNPHVVWSASEDGTLRQHDF 177 (751)
Q Consensus 132 ~~~~~~~~~~~~--~~h~-~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDl 177 (751)
..+...++..+ ..|+ .+|.+..|.+ +|.+++.+| ..+.++|-
T Consensus 111 -~~p~w~~i~~i~i~~~T~h~Igds~Wl~-~G~LvV~sG--Nqlfv~dk 155 (631)
T PF12234_consen 111 -KGPSWAPIRKIDISSHTPHPIGDSIWLK-DGTLVVGSG--NQLFVFDK 155 (631)
T ss_pred -CCcccceeEEEEeecCCCCCccceeEec-CCeEEEEeC--CEEEEECC
Confidence 11122333332 3455 6799999998 666665443 46777764
No 391
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.84 E-value=0.26 Score=57.91 Aligned_cols=103 Identities=13% Similarity=0.166 Sum_probs=71.6
Q ss_pred CCCEEEEEeCCCcEEEEeCCCCeEEEEecccCCcceEEEEEecCCCCcEEEEEECCCcEEEEECCCCCCCCCCCCCCCCc
Q 004477 61 KGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPS 140 (751)
Q Consensus 61 dg~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~Dg~V~vwd~~~~~~~~~~~~~~~~~ 140 (751)
.+..+|.|++-|.|...|+...-....-...-.++|.+++|+.+ |.+++.|-.+|.|.+||+... +++
T Consensus 98 ~~~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~d--g~~l~~G~~~G~V~v~D~~~~----------k~l 165 (1206)
T KOG2079|consen 98 VVVPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQD--GSLLLAGLGDGHVTVWDMHRA----------KIL 165 (1206)
T ss_pred eeeeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCC--CceeccccCCCcEEEEEccCC----------cce
Confidence 45678999999999988876431110111223589999999998 899999999999999999974 557
Q ss_pred eeecccCCceeEEEEec--CCCCEEEEEeCCCcEEEEec
Q 004477 141 ALYQCHTRRVKKLAVEV--GNPHVVWSASEDGTLRQHDF 177 (751)
Q Consensus 141 ~~~~~h~~~V~~l~~sp--~~~~~l~s~s~Dg~I~iwDl 177 (751)
+.+..|..+++.+-+.- .++..+.++..-|. +|.+
T Consensus 166 ~~i~e~~ap~t~vi~v~~t~~nS~llt~D~~Gs--f~~l 202 (1206)
T KOG2079|consen 166 KVITEHGAPVTGVIFVGRTSQNSKLLTSDTGGS--FWKL 202 (1206)
T ss_pred eeeeecCCccceEEEEEEeCCCcEEEEccCCCc--eEEE
Confidence 77777777666554431 13345667776676 4544
No 392
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=92.81 E-value=5.1 Score=46.26 Aligned_cols=147 Identities=18% Similarity=0.213 Sum_probs=78.7
Q ss_pred CCCEEEEEeCC------CcEEEEeCCCCeEEE--EecccCCcceEEEEEecCCCCcEEEEEECCCc-----EEEEECCCC
Q 004477 61 KGSLLISGSDD------THINVWSYSSRKLLH--SIETGHSANVFCTKFVPETSDELVVSGAGDAE-----VRLFNLSRF 127 (751)
Q Consensus 61 dg~~LaSgs~D------g~I~IWd~~~~~~~~--~l~~~h~~~V~~v~fsp~s~~~~l~sgs~Dg~-----V~vwd~~~~ 127 (751)
+|.+.++||.| .++-.||..+.+... .+ ..... =..++.. + |.+.|.|+.||. |-.||..+.
T Consensus 332 ~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~~a~M-~~~R~-~~~v~~l-~--g~iYavGG~dg~~~l~svE~YDp~~~ 406 (571)
T KOG4441|consen 332 NGKLYVVGGYDSGSDRLSSVERYDPRTNQWTPVAPM-NTKRS-DFGVAVL-D--GKLYAVGGFDGEKSLNSVECYDPVTN 406 (571)
T ss_pred CCEEEEEccccCCCcccceEEEecCCCCceeccCCc-cCccc-cceeEEE-C--CEEEEEeccccccccccEEEecCCCC
Confidence 46788899988 346677877665333 22 11111 1122222 2 678889999865 667777653
Q ss_pred CCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCCc------EEEEecCCCCCCCCCCCCCCccceEEEecc
Q 004477 128 SGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGT------LRQHDFRQGSSCPPAGSSHQECRNILLDLR 201 (751)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~------I~iwDlr~~~~~~~~~~~~~~~~~~l~~~~ 201 (751)
.- ..+..+. ......+...-++.+.+.||.|+. +..||..+.+
T Consensus 407 ~W--------~~va~m~---~~r~~~gv~~~~g~iYi~GG~~~~~~~l~sve~YDP~t~~-------------------- 455 (571)
T KOG4441|consen 407 KW--------TPVAPML---TRRSGHGVAVLGGKLYIIGGGDGSSNCLNSVECYDPETNT-------------------- 455 (571)
T ss_pred cc--------cccCCCC---cceeeeEEEEECCEEEEEcCcCCCccccceEEEEcCCCCc--------------------
Confidence 21 2222221 122233333337789999997764 4566666543
Q ss_pred cCceecccCCCCCccceEEEEEeCCCCcEEEEEeCCCe-----EEEEeCCCCC
Q 004477 202 CGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAF-----ARLYDRRMLP 249 (751)
Q Consensus 202 ~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~-----IriwD~~~~~ 249 (751)
...+..............+ ++.++++|+.|+. |..||..+.+
T Consensus 456 ---W~~~~~M~~~R~~~g~a~~---~~~iYvvGG~~~~~~~~~VE~ydp~~~~ 502 (571)
T KOG4441|consen 456 ---WTLIAPMNTRRSGFGVAVL---NGKIYVVGGFDGTSALSSVERYDPETNQ 502 (571)
T ss_pred ---eeecCCcccccccceEEEE---CCEEEEECCccCCCccceEEEEcCCCCc
Confidence 1122222222222222222 4678888887763 6778887654
No 393
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=92.65 E-value=6.6 Score=39.32 Aligned_cols=104 Identities=17% Similarity=0.154 Sum_probs=73.4
Q ss_pred CCEEEEEeCCCcEEEEeCCCCeEEEEecccCCcceEEEEEecCCCCcEEEEEECCCcEEEEECCCCCCCCCCCCCCCCce
Q 004477 62 GSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSA 141 (751)
Q Consensus 62 g~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~Dg~V~vwd~~~~~~~~~~~~~~~~~~ 141 (751)
.++++.||-.+.++--|.++|..+..-. -...|-+-+.. - |++++.|...|.+++-++++++ ...
T Consensus 23 kT~v~igSHs~~~~avd~~sG~~~We~i--lg~RiE~sa~v-v--gdfVV~GCy~g~lYfl~~~tGs----------~~w 87 (354)
T KOG4649|consen 23 KTLVVIGSHSGIVIAVDPQSGNLIWEAI--LGVRIECSAIV-V--GDFVVLGCYSGGLYFLCVKTGS----------QIW 87 (354)
T ss_pred ceEEEEecCCceEEEecCCCCcEEeehh--hCceeeeeeEE-E--CCEEEEEEccCcEEEEEecchh----------hee
Confidence 4678888888999989999998876542 23445554444 2 5789999999999999999762 233
Q ss_pred eecccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCC
Q 004477 142 LYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGS 181 (751)
Q Consensus 142 ~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~ 181 (751)
.+.. .+.|++-+....++.+++.|+.|++.+..|.++..
T Consensus 88 ~f~~-~~~vk~~a~~d~~~glIycgshd~~~yalD~~~~~ 126 (354)
T KOG4649|consen 88 NFVI-LETVKVRAQCDFDGGLIYCGSHDGNFYALDPKTYG 126 (354)
T ss_pred eeee-hhhhccceEEcCCCceEEEecCCCcEEEecccccc
Confidence 3321 23343333322367899999999999999998864
No 394
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=92.61 E-value=19 Score=39.70 Aligned_cols=34 Identities=3% Similarity=-0.052 Sum_probs=27.7
Q ss_pred cceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCC
Q 004477 216 LSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPP 250 (751)
Q Consensus 216 ~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~ 250 (751)
.++..|++||+ +++++.-..+|.+.+......+.
T Consensus 217 ~~i~~iavSpn-g~~iAl~t~~g~l~v~ssDf~~~ 250 (410)
T PF04841_consen 217 GPIIKIAVSPN-GKFIALFTDSGNLWVVSSDFSEK 250 (410)
T ss_pred CCeEEEEECCC-CCEEEEEECCCCEEEEECcccce
Confidence 47899999995 78999999999999988665443
No 395
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=92.56 E-value=0.12 Score=34.60 Aligned_cols=32 Identities=16% Similarity=0.168 Sum_probs=29.4
Q ss_pred hHHHhcCCCCCcchHHHHHHHHHHhcchHHHH
Q 004477 430 CYNARRIDSSSFRAHLYMSEALEQLCKYKEAL 461 (751)
Q Consensus 430 ~~~a~~~~~~~~~a~~~~~~~l~~l~~~~~a~ 461 (751)
+.+|++++|+++.+++.++.++...|++.+|.
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 46799999999999999999999999998874
No 396
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=91.99 E-value=16 Score=43.28 Aligned_cols=98 Identities=15% Similarity=0.050 Sum_probs=55.5
Q ss_pred CcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEecccCCcceEEEEEecCCCCcEEEEEECCCcEEEEECCCCCCC
Q 004477 51 GCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGR 130 (751)
Q Consensus 51 ~~V~~l~~s~dg~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~Dg~V~vwd~~~~~~~ 130 (751)
-.|..|.+||+|++||-.|..|.+.+.=.........+ .+-...|.|=. +.+...
T Consensus 85 f~v~~i~~n~~g~~lal~G~~~v~V~~LP~r~g~~~~~-~~g~~~i~Crt---------------------~~v~~~--- 139 (717)
T PF10168_consen 85 FEVHQISLNPTGSLLALVGPRGVVVLELPRRWGKNGEF-EDGKKEINCRT---------------------VPVDER--- 139 (717)
T ss_pred eeEEEEEECCCCCEEEEEcCCcEEEEEeccccCccccc-cCCCcceeEEE---------------------EEechh---
Confidence 36888999999999998887654444322221111122 22222333322 222210
Q ss_pred CCCCCCCCCceeecccCCceeEEEEecCC--CCEEEEEeCCCcEEEEecCCCCCC
Q 004477 131 GLDDNAITPSALYQCHTRRVKKLAVEVGN--PHVVWSASEDGTLRQHDFRQGSSC 183 (751)
Q Consensus 131 ~~~~~~~~~~~~~~~h~~~V~~l~~sp~~--~~~l~s~s~Dg~I~iwDlr~~~~~ 183 (751)
. ....+...|..+.|+|.. +..|+.-..|+++|+||+.....+
T Consensus 140 ---------~-~~~~~~~~i~qv~WhP~s~~~~~l~vLtsdn~lR~y~~~~~~~p 184 (717)
T PF10168_consen 140 ---------F-FTSNSSLEIKQVRWHPWSESDSHLVVLTSDNTLRLYDISDPQHP 184 (717)
T ss_pred ---------h-ccCCCCceEEEEEEcCCCCCCCeEEEEecCCEEEEEecCCCCCC
Confidence 1 112345667888998842 356677788899999999765533
No 397
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=91.77 E-value=2.3 Score=45.58 Aligned_cols=217 Identities=15% Similarity=0.215 Sum_probs=98.6
Q ss_pred EECCCCCEEEEEeC-CCc--EEEEeCCCCeEEEEecccCCcceEEEEEecCCCCcEEEEEECCCcEEEEECCCCCCCCCC
Q 004477 57 SWNSKGSLLISGSD-DTH--INVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLD 133 (751)
Q Consensus 57 ~~s~dg~~LaSgs~-Dg~--I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~Dg~V~vwd~~~~~~~~~~ 133 (751)
+|.++|+.|+-+|+ ||. +.+-|+.+++..+-. .+-..+.+...++|+ ++.++-......|+--|+.+..
T Consensus 42 ~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QLT-dg~g~~~~g~~~s~~--~~~~~Yv~~~~~l~~vdL~T~e----- 113 (386)
T PF14583_consen 42 CFTDDGRKLLFASDFDGNRNLYLLDLATGEITQLT-DGPGDNTFGGFLSPD--DRALYYVKNGRSLRRVDLDTLE----- 113 (386)
T ss_dssp -B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE----SS-B-TTT-EE-TT--SSEEEEEETTTEEEEEETTT-------
T ss_pred CcCCCCCEEEEEeccCCCcceEEEEcccCEEEECc-cCCCCCccceEEecC--CCeEEEEECCCeEEEEECCcCc-----
Confidence 56788976665554 555 555678877665433 232344556777888 4666545556788888888642
Q ss_pred CCCCCCceeecccCCceeEEEEec-CCCCEEEEEeCCCcEEEEecCCCCC---CCCCCCCCCccceEEEecccCceeccc
Q 004477 134 DNAITPSALYQCHTRRVKKLAVEV-GNPHVVWSASEDGTLRQHDFRQGSS---CPPAGSSHQECRNILLDLRCGAKRSLA 209 (751)
Q Consensus 134 ~~~~~~~~~~~~h~~~V~~l~~sp-~~~~~l~s~s~Dg~I~iwDlr~~~~---~~~~~~~~~~~~~~l~~~~~~~~~~~~ 209 (751)
....+.-....+-...|.. .+...++-.-.... |...... ..........|+.+.+++.+|....+.
T Consensus 114 -----~~~vy~~p~~~~g~gt~v~n~d~t~~~g~e~~~~----d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~~~v~ 184 (386)
T PF14583_consen 114 -----ERVVYEVPDDWKGYGTWVANSDCTKLVGIEISRE----DWKPLTKWKGFREFYEARPHCRIFTIDLKTGERKVVF 184 (386)
T ss_dssp -----EEEEEE--TTEEEEEEEEE-TTSSEEEEEEEEGG----G-----SHHHHHHHHHC---EEEEEEETTT--EEEEE
T ss_pred -----EEEEEECCcccccccceeeCCCccEEEEEEEeeh----hccCccccHHHHHHHhhCCCceEEEEECCCCceeEEE
Confidence 2233444455554555642 23344322111000 0000000 000011223466677777777665544
Q ss_pred CCCCCccceEEEEEeCCCCcEEEEEeC---CCe-EEEEeCCCCC-CccccCCCCCCCCccccccccccccCCccccceEE
Q 004477 210 DPPKQTLSLKSCDISSTRPHLLLVGGS---DAF-ARLYDRRMLP-PLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTH 284 (751)
Q Consensus 210 ~~~~~~~~v~~i~~sp~~~~~l~sgs~---D~~-IriwD~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~vt~ 284 (751)
. ...++..+.|+|.++.+|+-|-. |.. -|||=+++-. ....+ +. + .....++.
T Consensus 185 ~---~~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v----------------~~--~-~~~e~~gH 242 (386)
T PF14583_consen 185 E---DTDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKV----------------HR--R-MEGESVGH 242 (386)
T ss_dssp E---ESS-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS---EES----------------S------TTEEEEE
T ss_pred e---cCccccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCCCcceee----------------ec--C-CCCccccc
Confidence 3 34578899999998888777643 332 3667665322 11110 00 0 01123666
Q ss_pred EEEcCCCCEEEEEeC-----CCcEEEEECCCCC
Q 004477 285 VTFSPNGEEVLLSYS-----GEHVYLMDVNHAG 312 (751)
Q Consensus 285 v~fspdg~~Ll~~s~-----d~~I~lwdl~~~~ 312 (751)
=-|.|||..|.--+. +..|.-+|+.++.
T Consensus 243 Efw~~DG~~i~y~~~~~~~~~~~i~~~d~~t~~ 275 (386)
T PF14583_consen 243 EFWVPDGSTIWYDSYTPGGQDFWIAGYDPDTGE 275 (386)
T ss_dssp EEE-TTSS-EEEEEEETTT--EEEEEE-TTT--
T ss_pred ccccCCCCEEEEEeecCCCCceEEEeeCCCCCC
Confidence 779999987664332 3356667777754
No 398
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=91.74 E-value=0.47 Score=34.45 Aligned_cols=30 Identities=13% Similarity=0.309 Sum_probs=27.8
Q ss_pred ceEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 004477 281 HLTHVTFSPNGEEVLLSYSGEHVYLMDVNH 310 (751)
Q Consensus 281 ~vt~v~fspdg~~Ll~~s~d~~I~lwdl~~ 310 (751)
.|..++|+|....|++++.+|.|.||.++.
T Consensus 13 ~v~~~~w~P~mdLiA~~t~~g~v~v~Rl~~ 42 (47)
T PF12894_consen 13 RVSCMSWCPTMDLIALGTEDGEVLVYRLNW 42 (47)
T ss_pred cEEEEEECCCCCEEEEEECCCeEEEEECCC
Confidence 599999999999999999999999999943
No 399
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=91.70 E-value=0.34 Score=37.70 Aligned_cols=52 Identities=31% Similarity=0.309 Sum_probs=45.2
Q ss_pred hhhhHHHhhHHHhcCCCCCcchHHHHHHHHHHhcchHHHHHHHHHhcccCCC
Q 004477 422 DAQMAIRDCYNARRIDSSSFRAHLYMSEALEQLCKYKEALDFAIAAQCLDPS 473 (751)
Q Consensus 422 d~y~al~d~~~a~~~~~~~~~a~~~~~~~l~~l~~~~~a~~~~~~~~~~~p~ 473 (751)
+.-.|+.....++..+|.+..+++.++.++...|++.+|...++.+....|.
T Consensus 12 ~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~ 63 (65)
T PF13432_consen 12 DYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPD 63 (65)
T ss_dssp HHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC
Confidence 3446778888999999999999999999999999999999999888877774
No 400
>PHA03098 kelch-like protein; Provisional
Probab=91.68 E-value=7.6 Score=44.62 Aligned_cols=63 Identities=10% Similarity=0.077 Sum_probs=33.2
Q ss_pred CCCEEEEEeCCC------cEEEEeCCCCeEEEEec-ccCCcceEEEEEecCCCCcEEEEEECC-----CcEEEEECCCC
Q 004477 61 KGSLLISGSDDT------HINVWSYSSRKLLHSIE-TGHSANVFCTKFVPETSDELVVSGAGD-----AEVRLFNLSRF 127 (751)
Q Consensus 61 dg~~LaSgs~Dg------~I~IWd~~~~~~~~~l~-~~h~~~V~~v~fsp~s~~~~l~sgs~D-----g~V~vwd~~~~ 127 (751)
++.+++.||.++ .+..||..+.+....-. ....... ++... + +.+++.||.+ ..+..||..+.
T Consensus 294 ~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~R~~~-~~~~~-~--~~lyv~GG~~~~~~~~~v~~yd~~~~ 368 (534)
T PHA03098 294 NNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIYPRKNP-GVTVF-N--NRIYVIGGIYNSISLNTVESWKPGES 368 (534)
T ss_pred CCEEEEECCCcCCCCeeccEEEEeCCCCeeeECCCCCcccccc-eEEEE-C--CEEEEEeCCCCCEecceEEEEcCCCC
Confidence 456677776543 46778877665432110 1111111 22222 3 5777788765 34677887653
No 401
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=91.65 E-value=2.3 Score=46.03 Aligned_cols=129 Identities=17% Similarity=0.224 Sum_probs=68.7
Q ss_pred EEEEECCCCCEEEEEeC--------------------CCcEEEEeCCCCeEEEEecccCCc-ceEEEEEecCCC-CcEEE
Q 004477 54 NAISWNSKGSLLISGSD--------------------DTHINVWSYSSRKLLHSIETGHSA-NVFCTKFVPETS-DELVV 111 (751)
Q Consensus 54 ~~l~~s~dg~~LaSgs~--------------------Dg~I~IWd~~~~~~~~~l~~~h~~-~V~~v~fsp~s~-~~~l~ 111 (751)
..+-|.|.-+.++|... -.++.+||+.+.+.++++..+-.+ ....|+|..+.. ..-++
T Consensus 184 YDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~idLg~~g~~pLEvRflH~P~~~~gFv 263 (461)
T PF05694_consen 184 YDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQTIDLGEEGQMPLEVRFLHDPDANYGFV 263 (461)
T ss_dssp --EEEETTTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEEEEEES-TTEEEEEEEEE-SSTT--EEEE
T ss_pred CCeEEcCCCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEeeEEecCCCCCceEEEEecCCCCccceEE
Confidence 34556666677777642 456999999999999999666544 477899987632 23466
Q ss_pred EEECCCcEEEEECCCCCCCC-----CCCC------C--CCCceeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEecC
Q 004477 112 SGAGDAEVRLFNLSRFSGRG-----LDDN------A--ITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFR 178 (751)
Q Consensus 112 sgs~Dg~V~vwd~~~~~~~~-----~~~~------~--~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr 178 (751)
.+.-..+|..|--... +.- ++.. . .+.++.+..-..-|+.|..|.++..+.+++=.+|.||+||+.
T Consensus 264 g~aLss~i~~~~k~~~-g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~iSlDDrfLYvs~W~~GdvrqYDIS 342 (461)
T PF05694_consen 264 GCALSSSIWRFYKDDD-GEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLITDILISLDDRFLYVSNWLHGDVRQYDIS 342 (461)
T ss_dssp EEE--EEEEEEEE-ET-TEEEEEEEEEE--EE--SS---GGGGGG-EE------EEE-TTS-EEEEEETTTTEEEEEE-S
T ss_pred EEeccceEEEEEEcCC-CCeeeeEEEECCCcccCcccccccccccccCCCceEeEEEccCCCEEEEEcccCCcEEEEecC
Confidence 6666666666654321 100 0000 0 001111222245589999999887778888899999999999
Q ss_pred CCCCC
Q 004477 179 QGSSC 183 (751)
Q Consensus 179 ~~~~~ 183 (751)
.....
T Consensus 343 DP~~P 347 (461)
T PF05694_consen 343 DPFNP 347 (461)
T ss_dssp STTS-
T ss_pred CCCCC
Confidence 87644
No 402
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.96 E-value=0.82 Score=49.58 Aligned_cols=92 Identities=17% Similarity=0.124 Sum_probs=71.5
Q ss_pred cCCChhHHHHHhHHHHhcccCCCCCchhhhhHhHHHHHhhcccccchhhhHHHhhHHHhcCCCCCcchHHHHHHHHHHhc
Q 004477 376 EGKHPYYGIEACNEVLEGHLSGIGPMLRHECLCIRAALLLKRKWKNDAQMAIRDCYNARRIDSSSFRAHLYMSEALEQLC 455 (751)
Q Consensus 376 ~g~~~~~ai~~~~~~i~~~~~~~~~~~~~~~~~~ra~~~~~r~w~~d~y~al~d~~~a~~~~~~~~~a~~~~~~~l~~l~ 455 (751)
.++.|..|++.|..+|..-+..-.-.+....+.+-|.+.+. |..|+-.|+.=|.+|+.+||..-.|.--|+.-.++.+
T Consensus 474 DqqqFd~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l~~q--wk~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~ 551 (606)
T KOG0547|consen 474 DQQQFDKAVKQYDKAIELEPREHLIIVNAAPLVHKALLVLQ--WKEDINQAENLLRKAIELDPKCEQAYETLAQFELQRG 551 (606)
T ss_pred hHHhHHHHHHHHHHHHhhccccccccccchhhhhhhHhhhc--hhhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHh
Confidence 33348889999999988766621111222344555555555 9999999999999999999999999999999999999
Q ss_pred chHHHHHHHHHhcc
Q 004477 456 KYKEALDFAIAAQC 469 (751)
Q Consensus 456 ~~~~a~~~~~~~~~ 469 (751)
+..+|++..+++..
T Consensus 552 ~i~eAielFEksa~ 565 (606)
T KOG0547|consen 552 KIDEAIELFEKSAQ 565 (606)
T ss_pred hHHHHHHHHHHHHH
Confidence 99999998876643
No 403
>PRK11189 lipoprotein NlpI; Provisional
Probab=90.77 E-value=2.3 Score=44.77 Aligned_cols=100 Identities=16% Similarity=-0.011 Sum_probs=78.9
Q ss_pred HHHHHHHhhhcCCChhHHHHHhHHHHhcccCCCCCchhhhhHhHHHHHhhcccccchhhhHHHhhHHHhcCCCCCcchHH
Q 004477 366 LVEIARNSLEEGKHPYYGIEACNEVLEGHLSGIGPMLRHECLCIRAALLLKRKWKNDAQMAIRDCYNARRIDSSSFRAHL 445 (751)
Q Consensus 366 l~~~~~~~~~~g~~~~~ai~~~~~~i~~~~~~~~~~~~~~~~~~ra~~~~~r~w~~d~y~al~d~~~a~~~~~~~~~a~~ 445 (751)
....+.-....|. +..|+..|.+++...++. ...|.+++..+...+ +.-.|+....+++.++|.+..+++
T Consensus 67 ~~~~g~~~~~~g~-~~~A~~~~~~Al~l~P~~------~~a~~~lg~~~~~~g---~~~~A~~~~~~Al~l~P~~~~a~~ 136 (296)
T PRK11189 67 HYERGVLYDSLGL-RALARNDFSQALALRPDM------ADAYNYLGIYLTQAG---NFDAAYEAFDSVLELDPTYNYAYL 136 (296)
T ss_pred HHHHHHHHHHCCC-HHHHHHHHHHHHHcCCCC------HHHHHHHHHHHHHCC---CHHHHHHHHHHHHHhCCCCHHHHH
Confidence 3444555555566 778888999999876554 346677777776554 355678888999999999999999
Q ss_pred HHHHHHHHhcchHHHHHHHHHhcccCCCCh
Q 004477 446 YMSEALEQLCKYKEALDFAIAAQCLDPSNS 475 (751)
Q Consensus 446 ~~~~~l~~l~~~~~a~~~~~~~~~~~p~~~ 475 (751)
.++.++...|++.+|+..+.......|...
T Consensus 137 ~lg~~l~~~g~~~eA~~~~~~al~~~P~~~ 166 (296)
T PRK11189 137 NRGIALYYGGRYELAQDDLLAFYQDDPNDP 166 (296)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCCCH
Confidence 999999999999999999999888888764
No 404
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=90.64 E-value=0.78 Score=36.49 Aligned_cols=53 Identities=26% Similarity=0.229 Sum_probs=47.3
Q ss_pred hhhHHHhhHHHhcCCCCCcchHHHHHHHHHHhcchHHHHHHHHHhcccCCCCh
Q 004477 423 AQMAIRDCYNARRIDSSSFRAHLYMSEALEQLCKYKEALDFAIAAQCLDPSNS 475 (751)
Q Consensus 423 ~y~al~d~~~a~~~~~~~~~a~~~~~~~l~~l~~~~~a~~~~~~~~~~~p~~~ 475 (751)
.-.|+..+..++.++|.++.+++.++.++..+|++.+|...+......-|...
T Consensus 11 ~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~ 63 (73)
T PF13371_consen 11 YEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDP 63 (73)
T ss_pred HHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcH
Confidence 34678888999999999999999999999999999999999998888878544
No 405
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=90.43 E-value=17 Score=37.07 Aligned_cols=61 Identities=11% Similarity=0.225 Sum_probs=45.0
Q ss_pred EECCCCCEEEEEeC-----CCcEEEEeCCCC-eEEEEecccCCcceEEEEEecCCCCcEEEEEECCCcEEEE
Q 004477 57 SWNSKGSLLISGSD-----DTHINVWSYSSR-KLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLF 122 (751)
Q Consensus 57 ~~s~dg~~LaSgs~-----Dg~I~IWd~~~~-~~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~Dg~V~vw 122 (751)
.|||||.+|...-. -|.|-|||...+ ..+..+ ..|.-.-..+.|.++ |+.++.+. |-|...
T Consensus 120 vfs~dG~~LYATEndfd~~rGViGvYd~r~~fqrvgE~-~t~GiGpHev~lm~D--Grtlvvan--GGIeth 186 (366)
T COG3490 120 VFSPDGRLLYATENDFDPNRGVIGVYDAREGFQRVGEF-STHGIGPHEVTLMAD--GRTLVVAN--GGIETH 186 (366)
T ss_pred ccCCCCcEEEeecCCCCCCCceEEEEecccccceeccc-ccCCcCcceeEEecC--CcEEEEeC--Cceecc
Confidence 59999998887643 356889998754 345556 678888889999999 88888764 445554
No 406
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=90.35 E-value=17 Score=37.44 Aligned_cols=162 Identities=17% Similarity=0.171 Sum_probs=84.5
Q ss_pred CCcEEEEEECCCcEEEEECCCCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCCCC
Q 004477 106 SDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPP 185 (751)
Q Consensus 106 ~~~~l~sgs~Dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~ 185 (751)
.++.|+.|..+| +.++++.... .+.... +...|..+...|+- +.++.-+ |+.+.++++..-.....
T Consensus 6 ~~~~L~vGt~~G-l~~~~~~~~~---------~~~~i~--~~~~I~ql~vl~~~-~~llvLs-d~~l~~~~L~~l~~~~~ 71 (275)
T PF00780_consen 6 WGDRLLVGTEDG-LYVYDLSDPS---------KPTRIL--KLSSITQLSVLPEL-NLLLVLS-DGQLYVYDLDSLEPVST 71 (275)
T ss_pred CCCEEEEEECCC-EEEEEecCCc---------cceeEe--ecceEEEEEEeccc-CEEEEEc-CCccEEEEchhhccccc
Confidence 368899998888 8999993221 122222 33449999998844 4544443 49999999987654321
Q ss_pred CCCCCCccceEEEecccCceecccCCCCCccceEEEE-EeCCCCcEEEEEeCCCeEEEEeCCCCCCccccCCCCCCCCcc
Q 004477 186 AGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCD-ISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCV 264 (751)
Q Consensus 186 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~i~-~sp~~~~~l~sgs~D~~IriwD~~~~~~~~~~~~~~~~~~~~ 264 (751)
........ .. ...........+..++ -....+...++......|.+|.......... ...
T Consensus 72 ~~~~~~~~-~~----------~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~--------~~~ 132 (275)
T PF00780_consen 72 SAPLAFPK-SR----------SLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFS--------KLL 132 (275)
T ss_pred cccccccc-cc----------cccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCccccc--------cee
Confidence 10000000 00 0000000112233333 1122334444455556899988765311000 001
Q ss_pred ccccccccccCCccccceEEEEEcCCCCEEEEEeCCCcEEEEECCCCC
Q 004477 265 NYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAG 312 (751)
Q Consensus 265 ~~~~~~~~~~~g~~~~~vt~v~fspdg~~Ll~~s~d~~I~lwdl~~~~ 312 (751)
+.+ .+. ..+.+++|. ++.|+++..+ ...+.|+.++.
T Consensus 133 ke~---~lp------~~~~~i~~~--~~~i~v~~~~-~f~~idl~~~~ 168 (275)
T PF00780_consen 133 KEI---SLP------DPPSSIAFL--GNKICVGTSK-GFYLIDLNTGS 168 (275)
T ss_pred EEE---EcC------CCcEEEEEe--CCEEEEEeCC-ceEEEecCCCC
Confidence 111 111 147888898 6667777754 58899999754
No 407
>PRK13616 lipoprotein LpqB; Provisional
Probab=90.26 E-value=22 Score=41.19 Aligned_cols=105 Identities=10% Similarity=0.123 Sum_probs=58.8
Q ss_pred CcEEEEEECCCCCEEEEEe------CCCcEEEEeCCCCeEEEEecccCCcceEEEEEecCCCCcEEEEEECC-CcEEEE-
Q 004477 51 GCVNAISWNSKGSLLISGS------DDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGD-AEVRLF- 122 (751)
Q Consensus 51 ~~V~~l~~s~dg~~LaSgs------~Dg~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~D-g~V~vw- 122 (751)
..|...+++|+|+.+|..- .|..-.||=...+.....+..+. ....-.|+|+ |..|++.+.. ..+++.
T Consensus 350 ~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg~~~~lt~g~--~~t~PsWspD--G~~lw~v~dg~~~~~v~~ 425 (591)
T PRK13616 350 GNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLGGVAVQVLEGH--SLTRPSWSLD--ADAVWVVVDGNTVVRVIR 425 (591)
T ss_pred cCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCCCcceeeecCC--CCCCceECCC--CCceEEEecCcceEEEec
Confidence 3577889999999887665 34444444322222223332333 3788899999 6766666432 222222
Q ss_pred ----------ECCCCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCCcEEE
Q 004477 123 ----------NLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQ 174 (751)
Q Consensus 123 ----------d~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~i 174 (751)
++..+ +... ...+.|..+.|+|++ ..++... +|.|.+
T Consensus 426 ~~~~gql~~~~vd~g----------e~~~---~~~g~Issl~wSpDG-~RiA~i~-~g~v~V 472 (591)
T PRK13616 426 DPATGQLARTPVDAS----------AVAS---RVPGPISELQLSRDG-VRAAMII-GGKVYL 472 (591)
T ss_pred cCCCceEEEEeccCc----------hhhh---ccCCCcCeEEECCCC-CEEEEEE-CCEEEE
Confidence 33221 1111 235679999999955 5444333 466655
No 408
>PF11635 Med16: Mediator complex subunit 16; InterPro: IPR021665 Mediator is a large complex of up to 33 proteins that is conserved from plants through fungi to humans - the number and representation of individual subunits varying with species [],[]. It is arranged into four different sections, a core, a head, a tail and a kinase-activity part, and the number of subunits within each of these is what varies with species. Overall, Mediator regulates the transcriptional activity of RNA polymerase II but it would appear that each of the four different sections has a slightly different function. Med16 is one of the subunits of the Tail portion of the Mediator complex and is required for lipopolysaccharide gene-expression []. Several members including the human protein, Q9Y2X0 from SWISSPROT, have one or more WD40 domains on them, PF00400 from PFAM.
Probab=90.11 E-value=41 Score=40.36 Aligned_cols=236 Identities=12% Similarity=0.103 Sum_probs=114.8
Q ss_pred EEEEeCCCcEEEEeCCCCeEEEEec-------ccCCcceEEEEEecCCCCcEEEEEECC---CcEEEEECCCCCC--CCC
Q 004477 65 LISGSDDTHINVWSYSSRKLLHSIE-------TGHSANVFCTKFVPETSDELVVSGAGD---AEVRLFNLSRFSG--RGL 132 (751)
Q Consensus 65 LaSgs~Dg~I~IWd~~~~~~~~~l~-------~~h~~~V~~v~fsp~s~~~~l~sgs~D---g~V~vwd~~~~~~--~~~ 132 (751)
++.-...|.|++|=.+......... ..-...|+-.++.|..+|+.++.++.+ +.|++|.+.-.-+ .+.
T Consensus 65 ~i~Vt~nG~l~l~yQ~~~~~~~~~s~~el~s~~~s~~~ithAsi~~~~~g~~ili~t~s~~s~~l~~yrv~I~W~~~~~~ 144 (753)
T PF11635_consen 65 CIAVTRNGLLKLWYQKPDGQWNESSTAELESLGSSDDLITHASIAPSDNGKSILIATYSSLSKQLRFYRVQIDWNAKPQQ 144 (753)
T ss_pred EEEEecCCeEEEEEEcCCCccceeehhhhccccccccceeeceeeecCCCCEEEEEEccccCCceEEEEEEEeccCcCcc
Confidence 4444567889988663221111110 123456777777744446666655555 7888887654322 111
Q ss_pred CCCCCCCceeec---------------------ccCCceeEEEEec------CCCCEEEEEeCC----CcEEEEecCCCC
Q 004477 133 DDNAITPSALYQ---------------------CHTRRVKKLAVEV------GNPHVVWSASED----GTLRQHDFRQGS 181 (751)
Q Consensus 133 ~~~~~~~~~~~~---------------------~h~~~V~~l~~sp------~~~~~l~s~s~D----g~I~iwDlr~~~ 181 (751)
-+.+..|...+. ..-..++.+.|-+ ..+.++++.+.. ..|..|.++...
T Consensus 145 ~d~q~~PSl~l~~~~~~~~~~~~~~~~~~~~~~~~~~~LthL~ils~~~~~~~~p~Ili~~~~~~~~~SiI~RweL~~~~ 224 (753)
T PF11635_consen 145 IDPQKLPSLFLSHIADETPKDVDPTGWGDPSPDNSMYQLTHLEILSPTPDKDSAPEILIVYSSPNTPSSIIERWELREEQ 224 (753)
T ss_pred CCCCcCCeEEEEeccccccccccCccccccCcccccccceeEEEeccCCCCCCCCeEEEEEEcCCCCCcEEEEEEEEccC
Confidence 000000111110 0113566777754 233455555433 368899998764
Q ss_pred CCC-CCCCCCCccceEEEecccCceecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCccccCCCCCC
Q 004477 182 SCP-PAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSP 260 (751)
Q Consensus 182 ~~~-~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~~~~~~~~~~ 260 (751)
... .....-....+................-.....|.++..... +.+++..-.||.|.++|+.+.+.+........+
T Consensus 225 ~~lh~~F~ql~s~~~~~~~~~~~~~l~~~~~i~~~~~V~si~~~~~-~~~v~~~~~DGsI~~~dr~t~~~~~~~~~~~~~ 303 (753)
T PF11635_consen 225 QPLHPAFQQLGSKKNSSSEPPPTYRLRRLDDITLNKRVVSITSPEL-DIVVAFAFSDGSIEFRDRNTMKELNETRTNGEP 303 (753)
T ss_pred cccchhhhhcCCCCcCCCCCCCceeEEEecccccCCeEEEEEeccc-CcEEEEEEcCCeEEEEecCcchhhcccccccCC
Confidence 221 000000000000000000000000001112345667766664 568999999999999999998766544111111
Q ss_pred CC-ccccccccccccCCccccceEEEEEcCCCCEEEEEeCCCcEE
Q 004477 261 PP-CVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVY 304 (751)
Q Consensus 261 ~~-~~~~~~~~~~~~~g~~~~~vt~v~fspdg~~Ll~~s~d~~I~ 304 (751)
+. ....+..+.... ... .+-.++|||++.-++.-..++.+.
T Consensus 304 ~~~v~s~~~~Gf~fp--~~~-~~~~vafSPt~c~~v~~~~~~~~~ 345 (753)
T PF11635_consen 304 PNTVTSLFQAGFHFP--CIQ-PPLHVAFSPTMCSLVQIDEDGKTK 345 (753)
T ss_pred ccccccccccccccc--cCC-CCceEEECcccceEEEEecCCCce
Confidence 11 111111111110 001 355789999999999888888855
No 409
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=89.95 E-value=28 Score=36.55 Aligned_cols=115 Identities=17% Similarity=0.261 Sum_probs=57.9
Q ss_pred cCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEecccCCcceEEEEEecCCCCcEEEEEECCCcEEEEECCCC
Q 004477 48 GHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRF 127 (751)
Q Consensus 48 gH~~~V~~l~~s~dg~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~Dg~V~vwd~~~~ 127 (751)
+-.+.++.+.-+++|+++|+++.-..+.-||.....-...- ..-...|..+.|.|+ +.+.+.+ ..|.|+.=+....
T Consensus 142 ~~~gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~~~w~~~~-r~~~~riq~~gf~~~--~~lw~~~-~Gg~~~~s~~~~~ 217 (302)
T PF14870_consen 142 ETSGSINDITRSSDGRYVAVSSRGNFYSSWDPGQTTWQPHN-RNSSRRIQSMGFSPD--GNLWMLA-RGGQIQFSDDPDD 217 (302)
T ss_dssp S----EEEEEE-TTS-EEEEETTSSEEEEE-TT-SS-EEEE---SSS-EEEEEE-TT--S-EEEEE-TTTEEEEEE-TTE
T ss_pred CCcceeEeEEECCCCcEEEEECcccEEEEecCCCccceEEc-cCccceehhceecCC--CCEEEEe-CCcEEEEccCCCC
Confidence 34577889999999999998877666678886533222222 345688999999999 5665544 7888888772211
Q ss_pred CCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCCcEE
Q 004477 128 SGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLR 173 (751)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~ 173 (751)
.... .+++.....-.-.+..++|.+ +..+ +.++..|++.
T Consensus 218 -~~~w----~~~~~~~~~~~~~~ld~a~~~-~~~~-wa~gg~G~l~ 256 (302)
T PF14870_consen 218 -GETW----SEPIIPIKTNGYGILDLAYRP-PNEI-WAVGGSGTLL 256 (302)
T ss_dssp -EEEE-------B-TTSS--S-EEEEEESS-SS-E-EEEESTT-EE
T ss_pred -cccc----ccccCCcccCceeeEEEEecC-CCCE-EEEeCCccEE
Confidence 0000 011111222233478889987 4344 4556667664
No 410
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=89.90 E-value=19 Score=39.35 Aligned_cols=173 Identities=9% Similarity=0.014 Sum_probs=79.1
Q ss_pred EEEECCCCCEEEEE--e----CCCcEEEEeCCCCeEEEEecccC--CcceEEEEEecCCCCcEEEEEE------------
Q 004477 55 AISWNSKGSLLISG--S----DDTHINVWSYSSRKLLHSIETGH--SANVFCTKFVPETSDELVVSGA------------ 114 (751)
Q Consensus 55 ~l~~s~dg~~LaSg--s----~Dg~I~IWd~~~~~~~~~l~~~h--~~~V~~v~fsp~s~~~~l~sgs------------ 114 (751)
.+---|+|++++|+ . .-|-+.+.|-++........... ...-..+-|.|. -+.++|..
T Consensus 134 T~Hclp~G~imIS~lGd~~G~g~Ggf~llD~~tf~v~g~We~~~~~~~~gYDfw~qpr--~nvMiSSeWg~P~~~~~Gf~ 211 (461)
T PF05694_consen 134 TVHCLPDGRIMISALGDADGNGPGGFVLLDGETFEVKGRWEKDRGPQPFGYDFWYQPR--HNVMISSEWGAPSMFEKGFN 211 (461)
T ss_dssp EEEE-SS--EEEEEEEETTS-S--EEEEE-TTT--EEEE--SB-TT------EEEETT--TTEEEE-B---HHHHTT---
T ss_pred eeeecCCccEEEEeccCCCCCCCCcEEEEcCccccccceeccCCCCCCCCCCeEEcCC--CCEEEEeccCChhhcccCCC
Confidence 33444689888886 2 23458888888777666653322 334556777887 46777764
Q ss_pred --------CCCcEEEEECCCCCCCCCCCCCCCCceeecccC--CceeEEEEec--CCCCEEEEEeCCCcEEEEec-CCCC
Q 004477 115 --------GDAEVRLFNLSRFSGRGLDDNAITPSALYQCHT--RRVKKLAVEV--GNPHVVWSASEDGTLRQHDF-RQGS 181 (751)
Q Consensus 115 --------~Dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~--~~V~~l~~sp--~~~~~l~s~s~Dg~I~iwDl-r~~~ 181 (751)
.-.++.+||+... ++++++.--. ..+..|.|.. +...-|+.+....+|..|-- ..++
T Consensus 212 ~~d~~~~~yG~~l~vWD~~~r----------~~~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~ 281 (461)
T PF05694_consen 212 PEDLEAGKYGHSLHVWDWSTR----------KLLQTIDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGE 281 (461)
T ss_dssp TTTHHHH-S--EEEEEETTTT----------EEEEEEES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTE
T ss_pred hhHhhcccccCeEEEEECCCC----------cEeeEEecCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCC
Confidence 2367999999975 4566665332 2356677754 33445766666666665543 2221
Q ss_pred CCCCCCCCCCccceEEEecccCce------ecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCC
Q 004477 182 SCPPAGSSHQECRNILLDLRCGAK------RSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLP 249 (751)
Q Consensus 182 ~~~~~~~~~~~~~~~l~~~~~~~~------~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~ 249 (751)
- ....+++...... ..+..+.....-|+.|.+|.+|..+.+++=.+|.||.||+....
T Consensus 282 ---------W-~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~iSlDDrfLYvs~W~~GdvrqYDISDP~ 345 (461)
T PF05694_consen 282 ---------W-AAEKVIDIPAKKVEGWILPEMLKPFGAVPPLITDILISLDDRFLYVSNWLHGDVRQYDISDPF 345 (461)
T ss_dssp ---------E-EEEEEEEE--EE--SS---GGGGGG-EE------EEE-TTS-EEEEEETTTTEEEEEE-SSTT
T ss_pred ---------e-eeeEEEECCCcccCcccccccccccccCCCceEeEEEccCCCEEEEEcccCCcEEEEecCCCC
Confidence 0 0111222111000 00000111134578999999876666667789999999998643
No 411
>PHA02790 Kelch-like protein; Provisional
Probab=89.87 E-value=18 Score=40.87 Aligned_cols=106 Identities=9% Similarity=-0.064 Sum_probs=51.2
Q ss_pred CCCEEEEEeCCC-----cEEEEeCCCCeEEEEecccCCcceEEEEEecCCCCcEEEEEECC--CcEEEEECCCCCCCCCC
Q 004477 61 KGSLLISGSDDT-----HINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGD--AEVRLFNLSRFSGRGLD 133 (751)
Q Consensus 61 dg~~LaSgs~Dg-----~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~D--g~V~vwd~~~~~~~~~~ 133 (751)
++.+++.||.++ ++..||+.++.....-.......-.++.. -+ +.+.+.|+.+ .++..||..+..-
T Consensus 271 ~~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~~~v~-~~--~~iYviGG~~~~~sve~ydp~~n~W---- 343 (480)
T PHA02790 271 GEVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLYASGVP-AN--NKLYVVGGLPNPTSVERWFHGDAAW---- 343 (480)
T ss_pred CCEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhcceEEE-EC--CEEEEECCcCCCCceEEEECCCCeE----
Confidence 456677887653 46678887665432111111111122222 23 5677777754 3577788764321
Q ss_pred CCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCC---cEEEEecCCC
Q 004477 134 DNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDG---TLRQHDFRQG 180 (751)
Q Consensus 134 ~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg---~I~iwDlr~~ 180 (751)
..+..+....... +++. - ++++.+.||.++ ++..||.++.
T Consensus 344 ----~~~~~l~~~r~~~-~~~~-~-~g~IYviGG~~~~~~~ve~ydp~~~ 386 (480)
T PHA02790 344 ----VNMPSLLKPRCNP-AVAS-I-NNVIYVIGGHSETDTTTEYLLPNHD 386 (480)
T ss_pred ----EECCCCCCCCccc-EEEE-E-CCEEEEecCcCCCCccEEEEeCCCC
Confidence 1111221111111 1221 2 668888888654 3556666543
No 412
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=89.86 E-value=0.65 Score=36.33 Aligned_cols=53 Identities=23% Similarity=0.200 Sum_probs=46.0
Q ss_pred hhhhHHHhhHHHhcCCCCCcchHHHHHHHHHHhcchHHHHHHHHHhcccCCCC
Q 004477 422 DAQMAIRDCYNARRIDSSSFRAHLYMSEALEQLCKYKEALDFAIAAQCLDPSN 474 (751)
Q Consensus 422 d~y~al~d~~~a~~~~~~~~~a~~~~~~~l~~l~~~~~a~~~~~~~~~~~p~~ 474 (751)
+.-.|+.-..+++..+|.+..+.+.+++|+...|++.+|...+..+....|..
T Consensus 6 ~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~ 58 (68)
T PF14559_consen 6 DYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDN 58 (68)
T ss_dssp HHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTH
T ss_pred CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCH
Confidence 34557777888999999999999999999999999999999999988888863
No 413
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=89.58 E-value=26 Score=35.72 Aligned_cols=126 Identities=10% Similarity=0.012 Sum_probs=74.4
Q ss_pred cccccEEeccC-CCcEEEEEECCCCCEEEEEeCCC--cEEEEeCCCCeEEEEecccCCcceEEEEEecCCCCcEEEEEEC
Q 004477 39 RLSQERELEGH-QGCVNAISWNSKGSLLISGSDDT--HINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAG 115 (751)
Q Consensus 39 ~~~~~~~L~gH-~~~V~~l~~s~dg~~LaSgs~Dg--~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~ 115 (751)
+.+.++++.-. +.-...+.|..+|.++-|.+.-| .|+.+|+.+++.+........----.+.... +.++.-.-.
T Consensus 32 ~~~vv~~ypHd~~aFTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~~---d~l~qLTWk 108 (264)
T PF05096_consen 32 SYEVVETYPHDPTAFTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITILG---DKLYQLTWK 108 (264)
T ss_dssp EEEEEEEEE--TT-EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEET---TEEEEEESS
T ss_pred eeEEEEECCCCCcccCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEEC---CEEEEEEec
Confidence 34556665522 23455788988899999998766 6999999999877655333222222344443 355556677
Q ss_pred CCcEEEEECCCCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCC
Q 004477 116 DAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGS 181 (751)
Q Consensus 116 Dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~ 181 (751)
++...+||..+. +.+..+.- .+.=+.++ .++..+++| .....|..+|..+-+
T Consensus 109 ~~~~f~yd~~tl----------~~~~~~~y-~~EGWGLt--~dg~~Li~S-DGS~~L~~~dP~~f~ 160 (264)
T PF05096_consen 109 EGTGFVYDPNTL----------KKIGTFPY-PGEGWGLT--SDGKRLIMS-DGSSRLYFLDPETFK 160 (264)
T ss_dssp SSEEEEEETTTT----------EEEEEEE--SSS--EEE--ECSSCEEEE--SSSEEEEE-TTT-S
T ss_pred CCeEEEEccccc----------eEEEEEec-CCcceEEE--cCCCEEEEE-CCccceEEECCcccc
Confidence 899999999864 44555532 33446666 324455544 445688888877654
No 414
>PHA02713 hypothetical protein; Provisional
Probab=89.56 E-value=5.8 Score=45.76 Aligned_cols=23 Identities=0% Similarity=0.144 Sum_probs=18.1
Q ss_pred CCcEEEEEeCCC--eEEEEeCCCCC
Q 004477 227 RPHLLLVGGSDA--FARLYDRRMLP 249 (751)
Q Consensus 227 ~~~~l~sgs~D~--~IriwD~~~~~ 249 (751)
++++.++|+.|+ .+-.||..+.+
T Consensus 512 ~~~iyv~Gg~~~~~~~e~yd~~~~~ 536 (557)
T PHA02713 512 DNTIMMLHCYESYMLQDTFNVYTYE 536 (557)
T ss_pred CCEEEEEeeecceeehhhcCccccc
Confidence 568999999888 77788877654
No 415
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=89.19 E-value=4.4 Score=48.47 Aligned_cols=156 Identities=18% Similarity=0.138 Sum_probs=90.8
Q ss_pred ceEEEEEecCCCCcEEEEEECCCcEEEEECCCCCCCCCCCCCCCCce---eecccCCceeEEEEecCCCCEEEEEeCCCc
Q 004477 95 NVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSA---LYQCHTRRVKKLAVEVGNPHVVWSASEDGT 171 (751)
Q Consensus 95 ~V~~v~fsp~s~~~~l~sgs~Dg~V~vwd~~~~~~~~~~~~~~~~~~---~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~ 171 (751)
.|..+...++.....++..+.+-.|..||++........ ...+++ +......-+.++.|+|.-+..++.+..|+.
T Consensus 102 pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~--~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dls 179 (1405)
T KOG3630|consen 102 PIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYE--TTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLS 179 (1405)
T ss_pred cceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhh--hccccccccchhccccccccccccCCccchhhhhccccc
Confidence 344444455521234445556668999999864321100 001111 111223345678898866667778889999
Q ss_pred EEEEecCCCCCCCCCCCCCCccceEEEecccCceecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCc
Q 004477 172 LRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPL 251 (751)
Q Consensus 172 I~iwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~ 251 (751)
|++.-+...... | .. ......+++++|+| ++..+++|-+.|++.-|...-. ..
T Consensus 180 l~V~~~~~~~~~---------v---------------~s-~p~t~~~Tav~WSp-rGKQl~iG~nnGt~vQy~P~le-ik 232 (1405)
T KOG3630|consen 180 LRVKSTKQLAQN---------V---------------TS-FPVTNSQTAVLWSP-RGKQLFIGRNNGTEVQYEPSLE-IK 232 (1405)
T ss_pred hhhhhhhhhhhh---------h---------------cc-cCcccceeeEEecc-ccceeeEecCCCeEEEeecccc-ee
Confidence 988876543211 0 00 11345789999999 5899999999999999976422 11
Q ss_pred cccCCCCCCCCccccccccccccCCccccceEEEEEcCCCCEEEE
Q 004477 252 TSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLL 296 (751)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~vt~v~fspdg~~Ll~ 296 (751)
..+. .|+ . ...+.|.+|+|-....+|++
T Consensus 233 ~~ip---~Pp---------~-----~e~yrvl~v~Wl~t~eflvv 260 (1405)
T KOG3630|consen 233 SEIP---EPP---------V-----EENYRVLSVTWLSTQEFLVV 260 (1405)
T ss_pred eccc---CCC---------c-----CCCcceeEEEEecceeEEEE
Confidence 1111 011 0 01346999999887776654
No 416
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=88.89 E-value=1.1 Score=31.56 Aligned_cols=33 Identities=15% Similarity=0.090 Sum_probs=27.3
Q ss_pred CceeEEEEecCCC--CEEEEEeCCCcEEEEecCCC
Q 004477 148 RRVKKLAVEVGNP--HVVWSASEDGTLRQHDFRQG 180 (751)
Q Consensus 148 ~~V~~l~~sp~~~--~~l~s~s~Dg~I~iwDlr~~ 180 (751)
+.|.++.|+|..+ .+|+.+-.-|.|.++|+|+.
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~~ 35 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRSN 35 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEcccC
Confidence 4688999998665 68888878899999999964
No 417
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=88.81 E-value=6 Score=34.38 Aligned_cols=103 Identities=15% Similarity=0.010 Sum_probs=72.1
Q ss_pred HHHHHHhhhcCCChhHHHHHhHHHHhcccCCCCCchhhhhHhHHHHHhhcccccchhhhHHHhhHHHhcCCCCC---cch
Q 004477 367 VEIARNSLEEGKHPYYGIEACNEVLEGHLSGIGPMLRHECLCIRAALLLKRKWKNDAQMAIRDCYNARRIDSSS---FRA 443 (751)
Q Consensus 367 ~~~~~~~~~~g~~~~~ai~~~~~~i~~~~~~~~~~~~~~~~~~ra~~~~~r~w~~d~y~al~d~~~a~~~~~~~---~~a 443 (751)
...+...+..++ +..++..+..++..++..... ...+...+.++.+.+ +.-.|+.-...++..+|.+ ..+
T Consensus 6 ~~~~~~~~~~~~-~~~A~~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~---~~~~A~~~~~~~~~~~p~~~~~~~~ 78 (119)
T TIGR02795 6 YDAALLVLKAGD-YADAIQAFQAFLKKYPKSTYA---PNAHYWLGEAYYAQG---KYADAAKAFLAVVKKYPKSPKAPDA 78 (119)
T ss_pred HHHHHHHHHcCC-HHHHHHHHHHHHHHCCCcccc---HHHHHHHHHHHHhhc---cHHHHHHHHHHHHHHCCCCCcccHH
Confidence 345556666666 888999999999877654211 122333444444433 2334666677777787775 567
Q ss_pred HHHHHHHHHHhcchHHHHHHHHHhcccCCCChh
Q 004477 444 HLYMSEALEQLCKYKEALDFAIAAQCLDPSNSV 476 (751)
Q Consensus 444 ~~~~~~~l~~l~~~~~a~~~~~~~~~~~p~~~~ 476 (751)
++.++.++..+++..+|..++..+...+|....
T Consensus 79 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~ 111 (119)
T TIGR02795 79 LLKLGMSLQELGDKEKAKATLQQVIKRYPGSSA 111 (119)
T ss_pred HHHHHHHHHHhCChHHHHHHHHHHHHHCcCChh
Confidence 889999999999999999999999988886543
No 418
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=88.66 E-value=4.7 Score=32.34 Aligned_cols=91 Identities=25% Similarity=0.194 Sum_probs=58.2
Q ss_pred HhhhcCCChhHHHHHhHHHHhcccCCCCCchhhhhHhHHHHHhhcccccchhhhHHHhhHHHhcCCCCCcchHHHHHHHH
Q 004477 372 NSLEEGKHPYYGIEACNEVLEGHLSGIGPMLRHECLCIRAALLLKRKWKNDAQMAIRDCYNARRIDSSSFRAHLYMSEAL 451 (751)
Q Consensus 372 ~~~~~g~~~~~ai~~~~~~i~~~~~~~~~~~~~~~~~~ra~~~~~r~w~~d~y~al~d~~~a~~~~~~~~~a~~~~~~~l 451 (751)
.....+. +..++..+..++...+.. ...+...+..+... ++...|...+..++.+.|....+++.++.++
T Consensus 9 ~~~~~~~-~~~A~~~~~~~~~~~~~~------~~~~~~~~~~~~~~---~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (100)
T cd00189 9 LYYKLGD-YDEALEYYEKALELDPDN------ADAYYNLAAAYYKL---GKYEEALEDYEKALELDPDNAKAYYNLGLAY 78 (100)
T ss_pred HHHHHhc-HHHHHHHHHHHHhcCCcc------HHHHHHHHHHHHHH---HHHHHHHHHHHHHHhCCCcchhHHHHHHHHH
Confidence 3333444 666777777776654432 12334444444443 3445667777777888888888888888888
Q ss_pred HHhcchHHHHHHHHHhcccCC
Q 004477 452 EQLCKYKEALDFAIAAQCLDP 472 (751)
Q Consensus 452 ~~l~~~~~a~~~~~~~~~~~p 472 (751)
...+.+.+|...+..+....|
T Consensus 79 ~~~~~~~~a~~~~~~~~~~~~ 99 (100)
T cd00189 79 YKLGKYEEALEAYEKALELDP 99 (100)
T ss_pred HHHHhHHHHHHHHHHHHccCC
Confidence 888888888877766555444
No 419
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=88.62 E-value=2.3 Score=47.52 Aligned_cols=91 Identities=18% Similarity=0.094 Sum_probs=70.4
Q ss_pred hcCCChhHHHHHhHHHHhcccCCCCCchhhhhHhHHHHHhhcccccchhhhHHHhhHHHhcCCCCCcchHHHHHHHHHHh
Q 004477 375 EEGKHPYYGIEACNEVLEGHLSGIGPMLRHECLCIRAALLLKRKWKNDAQMAIRDCYNARRIDSSSFRAHLYMSEALEQL 454 (751)
Q Consensus 375 ~~g~~~~~ai~~~~~~i~~~~~~~~~~~~~~~~~~ra~~~~~r~w~~d~y~al~d~~~a~~~~~~~~~a~~~~~~~l~~l 454 (751)
++|. +..||..|..+|...++. ++.|+|-|-++... |++-.|.+--.+|+.+.|+|..+...++....+.
T Consensus 298 eqG~-ldlAI~~Ykral~~~P~F------~~Ay~NlanALkd~---G~V~ea~~cYnkaL~l~p~hadam~NLgni~~E~ 367 (966)
T KOG4626|consen 298 EQGL-LDLAIDTYKRALELQPNF------PDAYNNLANALKDK---GSVTEAVDCYNKALRLCPNHADAMNNLGNIYREQ 367 (966)
T ss_pred cccc-HHHHHHHHHHHHhcCCCc------hHHHhHHHHHHHhc---cchHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh
Confidence 3444 667888999988866554 45788888887655 6778888888888999998888888888888888
Q ss_pred cchHHHHHHHHHhcccCCCCh
Q 004477 455 CKYKEALDFAIAAQCLDPSNS 475 (751)
Q Consensus 455 ~~~~~a~~~~~~~~~~~p~~~ 475 (751)
+++.+|..+.......||..+
T Consensus 368 ~~~e~A~~ly~~al~v~p~~a 388 (966)
T KOG4626|consen 368 GKIEEATRLYLKALEVFPEFA 388 (966)
T ss_pred ccchHHHHHHHHHHhhChhhh
Confidence 888888877777777777654
No 420
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=88.13 E-value=0.43 Score=55.03 Aligned_cols=119 Identities=18% Similarity=0.230 Sum_probs=74.4
Q ss_pred EeccCCCcEEEEEECC-CCCEEEEEeCCCcEEEEeCC--CCeEE----EEecccCCcceEEEEEecCCC-CcEEEEEECC
Q 004477 45 ELEGHQGCVNAISWNS-KGSLLISGSDDTHINVWSYS--SRKLL----HSIETGHSANVFCTKFVPETS-DELVVSGAGD 116 (751)
Q Consensus 45 ~L~gH~~~V~~l~~s~-dg~~LaSgs~Dg~I~IWd~~--~~~~~----~~l~~~h~~~V~~v~fsp~s~-~~~l~sgs~D 116 (751)
.++|..|.|-.|.|-. +...++ -.-|.+.||++. .|+.. .+..+.....+.-|.|+|--. ..++..+-.+
T Consensus 127 l~kgf~G~v~dl~fah~~~pk~~--~~vg~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~wcp~~~~~~~ic~~~~~ 204 (1283)
T KOG1916|consen 127 LAKGFPGGVGDLQFAHTKCPKGR--RLVGELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVSWCPIAVNKVYICYGLKG 204 (1283)
T ss_pred HHhcCCCCcccccccccCChHHH--HHhhhhheeehHhhccccccceEEeecCcCCCCcceeeecccccccceeeeccCC
Confidence 3578889999999954 222222 344678999875 34322 222244455566777776421 3566667778
Q ss_pred CcEEEEECCCCCCCCCCCCCCCCceeecccCCceeEEEE-----------ecCCCCEEEEEeCCCcEEEEec
Q 004477 117 AEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAV-----------EVGNPHVVWSASEDGTLRQHDF 177 (751)
Q Consensus 117 g~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~-----------sp~~~~~l~s~s~Dg~I~iwDl 177 (751)
++|++..+.+. ....+.+|..++..++| +| +|..|+++..||.++.|-+
T Consensus 205 ~~i~lL~~~ra-----------~~~l~rsHs~~~~d~a~~~~g~~~l~~lSp-DGtv~a~a~~dG~v~f~Qi 264 (1283)
T KOG1916|consen 205 GEIRLLNINRA-----------LRSLFRSHSQRVTDMAFFAEGVLKLASLSP-DGTVFAWAISDGSVGFYQI 264 (1283)
T ss_pred CceeEeeechH-----------HHHHHHhcCCCcccHHHHhhchhhheeeCC-CCcEEEEeecCCccceeee
Confidence 89998888753 23556678887777665 45 5566666666676666644
No 421
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=87.67 E-value=4.8 Score=48.18 Aligned_cols=116 Identities=8% Similarity=0.001 Sum_probs=76.2
Q ss_pred cEEEEEECCCCCEEEE--EeCCCcEEEEeCCCCe--------EEEEec--ccCCcceEEEEEecCCCCcEEEEEECCCcE
Q 004477 52 CVNAISWNSKGSLLIS--GSDDTHINVWSYSSRK--------LLHSIE--TGHSANVFCTKFVPETSDELVVSGAGDAEV 119 (751)
Q Consensus 52 ~V~~l~~s~dg~~LaS--gs~Dg~I~IWd~~~~~--------~~~~l~--~~h~~~V~~v~fsp~s~~~~l~sgs~Dg~V 119 (751)
.|..+..++|++..+. .+.+-.|..+|+.+-. ++..-. .....-..++.|.|.- ....+.+..|+.|
T Consensus 102 pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~v-p~n~av~l~dlsl 180 (1405)
T KOG3630|consen 102 PIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLV-PLNSAVDLSDLSL 180 (1405)
T ss_pred cceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCc-cchhhhhccccch
Confidence 5666677778775544 3445578889986421 111111 1223445688899985 4567778889999
Q ss_pred EEEECCCCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCC
Q 004477 120 RLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQ 179 (751)
Q Consensus 120 ~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~ 179 (751)
+|.-+...... ...+ .-...+++++|+| .+..++.|-..|++.+|-..-
T Consensus 181 ~V~~~~~~~~~---------v~s~-p~t~~~Tav~WSp-rGKQl~iG~nnGt~vQy~P~l 229 (1405)
T KOG3630|consen 181 RVKSTKQLAQN---------VTSF-PVTNSQTAVLWSP-RGKQLFIGRNNGTEVQYEPSL 229 (1405)
T ss_pred hhhhhhhhhhh---------hccc-CcccceeeEEecc-ccceeeEecCCCeEEEeeccc
Confidence 99888743111 1111 2456789999999 678888999999999997543
No 422
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=87.51 E-value=5.8 Score=46.50 Aligned_cols=87 Identities=13% Similarity=0.074 Sum_probs=52.0
Q ss_pred hhHHHHHhHHHHhcccCCCCCchhhhhHhHHHHHhhcccccchhhhHHHhhHHHhcCCCCCcchHHHHHHHHHHhcchHH
Q 004477 380 PYYGIEACNEVLEGHLSGIGPMLRHECLCIRAALLLKRKWKNDAQMAIRDCYNARRIDSSSFRAHLYMSEALEQLCKYKE 459 (751)
Q Consensus 380 ~~~ai~~~~~~i~~~~~~~~~~~~~~~~~~ra~~~~~r~w~~d~y~al~d~~~a~~~~~~~~~a~~~~~~~l~~l~~~~~ 459 (751)
+..++..+..++...+.. ...+..++.++... |+.-.|+.+..+++.++|....+++.++.++..+|++.+
T Consensus 381 ~~eA~~~~~~al~~~p~~------~~~~~~lg~~~~~~---g~~~~A~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~e 451 (615)
T TIGR00990 381 PDKAEEDFDKALKLNSED------PDIYYHRAQLHFIK---GEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGSIAS 451 (615)
T ss_pred HHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHc---CCHHHHHHHHHHHHHcCccCHHHHHHHHHHHHHCCCHHH
Confidence 455555555555543322 23455555555432 344456666777777777777777777777777777777
Q ss_pred HHHHHHHhcccCCCCh
Q 004477 460 ALDFAIAAQCLDPSNS 475 (751)
Q Consensus 460 a~~~~~~~~~~~p~~~ 475 (751)
|+..+......+|...
T Consensus 452 A~~~~~~al~~~P~~~ 467 (615)
T TIGR00990 452 SMATFRRCKKNFPEAP 467 (615)
T ss_pred HHHHHHHHHHhCCCCh
Confidence 7766666666666543
No 423
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=87.12 E-value=10 Score=35.38 Aligned_cols=99 Identities=12% Similarity=-0.122 Sum_probs=69.2
Q ss_pred chhHHHHHHHHHhhhcCCChhHHHHHhHHHHhcccCCCCCchhhhhHhHHHHHhhcccccchhhhHHHhhHHHhcCCCCC
Q 004477 361 GKCRMLVEIARNSLEEGKHPYYGIEACNEVLEGHLSGIGPMLRHECLCIRAALLLKRKWKNDAQMAIRDCYNARRIDSSS 440 (751)
Q Consensus 361 ~~~~~l~~~~~~~~~~g~~~~~ai~~~~~~i~~~~~~~~~~~~~~~~~~ra~~~~~r~w~~d~y~al~d~~~a~~~~~~~ 440 (751)
+....+-..+......|+ +..|...|.-....-+.. ...|-|-++.+-..+ +...|+.--..|..++|++
T Consensus 33 ~~l~~lY~~A~~ly~~G~-l~~A~~~f~~L~~~Dp~~------~~y~~gLG~~~Q~~g---~~~~AI~aY~~A~~L~~dd 102 (157)
T PRK15363 33 QPLNTLYRYAMQLMEVKE-FAGAARLFQLLTIYDAWS------FDYWFRLGECCQAQK---HWGEAIYAYGRAAQIKIDA 102 (157)
T ss_pred HHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHhCccc------HHHHHHHHHHHHHHh---hHHHHHHHHHHHHhcCCCC
Confidence 344455566667777777 777888777655433222 234445555544333 3445666667789999999
Q ss_pred cchHHHHHHHHHHhcchHHHHHHHHHhcc
Q 004477 441 FRAHLYMSEALEQLCKYKEALDFAIAAQC 469 (751)
Q Consensus 441 ~~a~~~~~~~l~~l~~~~~a~~~~~~~~~ 469 (751)
+.++++.+.|++.+|+...|..++.....
T Consensus 103 p~~~~~ag~c~L~lG~~~~A~~aF~~Ai~ 131 (157)
T PRK15363 103 PQAPWAAAECYLACDNVCYAIKALKAVVR 131 (157)
T ss_pred chHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 99999999999999999999988876654
No 424
>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []. These proteins are found in fungi.
Probab=86.74 E-value=52 Score=39.65 Aligned_cols=91 Identities=8% Similarity=0.088 Sum_probs=56.3
Q ss_pred ccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCccccCCCCCCCCcccccccccc-ccCCccccceEEEEEcCCCCE
Q 004477 215 TLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHL-SEHGRSSLHLTHVTFSPNGEE 293 (751)
Q Consensus 215 ~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~vt~v~fspdg~~ 293 (751)
......++|+|.+...||+....|...|||+........-... ..... .+++ ...... .....+.|.++-..
T Consensus 145 g~~~aDv~FnP~~~~q~AiVD~~G~Wsvw~i~~~~~~~~~~~~-----~~~~~-~gsi~~d~~e~-s~w~rI~W~~~~~~ 217 (765)
T PF10214_consen 145 GFPHADVAFNPWDQRQFAIVDEKGNWSVWDIKGRPKRKSSNLR-----LSRNI-SGSIIFDPEEL-SNWKRILWVSDSNR 217 (765)
T ss_pred CCccceEEeccCccceEEEEeccCcEEEEEeccccccCCccee-----eccCC-CccccCCCccc-CcceeeEecCCCCE
Confidence 3467789999988889999999999999999222111100000 00000 0111 110011 13668999999888
Q ss_pred EEEEeCCCcEEEEECCCCCc
Q 004477 294 VLLSYSGEHVYLMDVNHAGG 313 (751)
Q Consensus 294 Ll~~s~d~~I~lwdl~~~~~ 313 (751)
|+++.. ..+.++|+.+...
T Consensus 218 lLv~~r-~~l~~~d~~~~~~ 236 (765)
T PF10214_consen 218 LLVCNR-SKLMLIDFESNWQ 236 (765)
T ss_pred EEEEcC-CceEEEECCCCCc
Confidence 888765 4789999988654
No 425
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=86.54 E-value=7.4 Score=42.65 Aligned_cols=58 Identities=10% Similarity=0.035 Sum_probs=46.9
Q ss_pred hhccccccEEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEecccCCc
Q 004477 36 LVRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSA 94 (751)
Q Consensus 36 ~i~~~~~~~~L~gH~~~V~~l~~s~dg~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~ 94 (751)
....+.....|......+.+|..+|++++.|+...=|.|.|+|+.++..++-. +|..+
T Consensus 293 ~~~~l~~r~~l~D~~R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmW-KGYRd 350 (415)
T PF14655_consen 293 PAAPLPMRFGLPDSKREGESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMW-KGYRD 350 (415)
T ss_pred CCcccceEEeeccCCceEEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhh-ccCcc
Confidence 34455667778888889999999999999999888899999999988777665 55443
No 426
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=86.38 E-value=0.86 Score=48.42 Aligned_cols=91 Identities=13% Similarity=0.017 Sum_probs=69.9
Q ss_pred HHHHHHHHhhhcCCChhHHHHHhHHHHhcccCCCCCchhhhhHhHHHHHhhcccccchhhhHHHhhHHHhcCCCCCcchH
Q 004477 365 MLVEIARNSLEEGKHPYYGIEACNEVLEGHLSGIGPMLRHECLCIRAALLLKRKWKNDAQMAIRDCYNARRIDSSSFRAH 444 (751)
Q Consensus 365 ~l~~~~~~~~~~g~~~~~ai~~~~~~i~~~~~~~~~~~~~~~~~~ra~~~~~r~w~~d~y~al~d~~~a~~~~~~~~~a~ 444 (751)
.+...++....... |.-++..|+.+|...+.+ ..-|.|||+.+|.-.- .-.|+.|....+++++..+++|
T Consensus 51 ~~k~~gn~~yk~k~-Y~nal~~yt~Ai~~~pd~------a~yy~nRAa~~m~~~~---~~~a~~dar~~~r~kd~~~k~~ 120 (486)
T KOG0550|consen 51 EAKEEGNAFYKQKT-YGNALKNYTFAIDMCPDN------ASYYSNRAATLMMLGR---FEEALGDARQSVRLKDGFSKGQ 120 (486)
T ss_pred HHHhhcchHHHHhh-HHHHHHHHHHHHHhCccc------hhhhchhHHHHHHHHh---HhhcccchhhheecCCCccccc
Confidence 33444444444434 778888999999888776 4578999999986543 4568889999999999999999
Q ss_pred HHHHHHHHHhcchHHHHHHHH
Q 004477 445 LYMSEALEQLCKYKEALDFAI 465 (751)
Q Consensus 445 ~~~~~~l~~l~~~~~a~~~~~ 465 (751)
.|..+|-..++-..+|...+.
T Consensus 121 ~r~~~c~~a~~~~i~A~~~~~ 141 (486)
T KOG0550|consen 121 LREGQCHLALSDLIEAEEKLK 141 (486)
T ss_pred cchhhhhhhhHHHHHHHHHhh
Confidence 999999999987777765443
No 427
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=86.28 E-value=45 Score=34.64 Aligned_cols=230 Identities=10% Similarity=0.053 Sum_probs=118.6
Q ss_pred cEEEEEECCCCCEEEEEeCCCcEEEEeCC-------CCeEEEEecc--c--CCcceEEEEEecCC----------CCcEE
Q 004477 52 CVNAISWNSKGSLLISGSDDTHINVWSYS-------SRKLLHSIET--G--HSANVFCTKFVPET----------SDELV 110 (751)
Q Consensus 52 ~V~~l~~s~dg~~LaSgs~Dg~I~IWd~~-------~~~~~~~l~~--~--h~~~V~~v~fsp~s----------~~~~l 110 (751)
--|.|+++|.+.+-++...-+...+||.. ...++.++.. + -....+.+.|+..+ ....+
T Consensus 24 N~WGia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a~F 103 (336)
T TIGR03118 24 NAWGLSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPSRF 103 (336)
T ss_pred ccceeEecCCCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCcccceeE
Confidence 35689999999999999899999999986 1223334421 1 23457777777542 01236
Q ss_pred EEEECCCcEEEEECCCCCCCCCCCCCCCCceeec-ccCCce-eEEEEecC--CCCEEEEEeCCCcEEEEecCCCCCCCCC
Q 004477 111 VSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQ-CHTRRV-KKLAVEVG--NPHVVWSASEDGTLRQHDFRQGSSCPPA 186 (751)
Q Consensus 111 ~sgs~Dg~V~vwd~~~~~~~~~~~~~~~~~~~~~-~h~~~V-~~l~~sp~--~~~~l~s~s~Dg~I~iwDlr~~~~~~~~ 186 (751)
+.++.||+|.=|.......... .....+. .-...| +.+++... +..+.++--..++|.+||-.-......
T Consensus 104 if~tEdGTisaW~p~v~~t~~~-----~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f~~~~~~- 177 (336)
T TIGR03118 104 LFVTEDGTLSGWAPALGTTRMT-----RAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSFRPPPLP- 177 (336)
T ss_pred EEEeCCceEEeecCcCCccccc-----ccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCccccccCC-
Confidence 7788999999999654321000 0112222 112333 56776642 233444445689999998654432100
Q ss_pred CCCCCccceEEEecccCceecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCccccCCCCCCCCcccc
Q 004477 187 GSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNY 266 (751)
Q Consensus 187 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~~~~~~~~~~~~~~~~ 266 (751)
.......+-.....-. +.. -+....|+-..-.+. .+.=+.|..-|.|-+||+.- .. ++.
T Consensus 178 --g~F~DP~iPagyAPFn---Iqn-ig~~lyVtYA~qd~~-~~d~v~G~G~G~VdvFd~~G-~l-------------~~r 236 (336)
T TIGR03118 178 --GSFIDPALPAGYAPFN---VQN-LGGTLYVTYAQQDAD-RNDEVAGAGLGYVNVFTLNG-QL-------------LRR 236 (336)
T ss_pred --CCccCCCCCCCCCCcc---eEE-ECCeEEEEEEecCCc-ccccccCCCcceEEEEcCCC-cE-------------EEE
Confidence 0000000000000000 000 001111222222231 22334445567888888752 11 221
Q ss_pred ccccccccCCccccceEEEEEcC------CCCEEEEEeCCCcEEEEECCCCCcc
Q 004477 267 FCPMHLSEHGRSSLHLTHVTFSP------NGEEVLLSYSGEHVYLMDVNHAGGR 314 (751)
Q Consensus 267 ~~~~~~~~~g~~~~~vt~v~fsp------dg~~Ll~~s~d~~I~lwdl~~~~~~ 314 (751)
+.. .+.-+ ..+.|+..| .|..|+-.-.||+|..||..++...
T Consensus 237 ~as-----~g~LN-aPWG~a~APa~FG~~sg~lLVGNFGDG~InaFD~~sG~~~ 284 (336)
T TIGR03118 237 VAS-----SGRLN-APWGLAIAPESFGSLSGALLVGNFGDGTINAYDPQSGAQL 284 (336)
T ss_pred ecc-----CCccc-CCceeeeChhhhCCCCCCeEEeecCCceeEEecCCCCcee
Confidence 211 11111 256666655 5677777788999999999886533
No 428
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=86.10 E-value=4.6 Score=44.24 Aligned_cols=98 Identities=11% Similarity=0.106 Sum_probs=59.8
Q ss_pred ccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCccccCCCCCCCCccccccccccccCCccccceEEEEEcCCC---
Q 004477 215 TLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNG--- 291 (751)
Q Consensus 215 ~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~vt~v~fspdg--- 291 (751)
...|..+..++. |..++..+.+|.+.++=.+..-+-..+........|-..-....+... .....+..++|+|+.
T Consensus 103 ~feV~~vl~s~~-GS~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~~~fts-s~~ltl~Qa~WHP~S~~D 180 (741)
T KOG4460|consen 103 LFEVYQVLLSPT-GSHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAERFFTS-STSLTLKQAAWHPSSILD 180 (741)
T ss_pred eEEEEEEEecCC-CceEEEecCCeeEEEEchhhcCccceecCCCceEEEEeecccceeecc-CCceeeeeccccCCccCC
Confidence 457888999995 788888889998877654332222222222111122111111111111 123357789999976
Q ss_pred CEEEEEeCCCcEEEEECCCCCcc
Q 004477 292 EEVLLSYSGEHVYLMDVNHAGGR 314 (751)
Q Consensus 292 ~~Ll~~s~d~~I~lwdl~~~~~~ 314 (751)
..|++-++|+.|+|||+......
T Consensus 181 ~hL~iL~sdnviRiy~lS~~tel 203 (741)
T KOG4460|consen 181 PHLVLLTSDNVIRIYSLSEPTEL 203 (741)
T ss_pred ceEEEEecCcEEEEEecCCcchh
Confidence 68999999999999999885433
No 429
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=85.82 E-value=3.1 Score=29.43 Aligned_cols=32 Identities=19% Similarity=0.362 Sum_probs=26.9
Q ss_pred CcEEEEEECCC-C--CEEEEEeCCCcEEEEeCCCC
Q 004477 51 GCVNAISWNSK-G--SLLISGSDDTHINVWSYSSR 82 (751)
Q Consensus 51 ~~V~~l~~s~d-g--~~LaSgs~Dg~I~IWd~~~~ 82 (751)
|.|.+++|+|. + .+||-+-.-+.|.|+|+.++
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~~ 35 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRSN 35 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEcccC
Confidence 57899999984 4 58998888899999999854
No 430
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=85.35 E-value=18 Score=40.68 Aligned_cols=157 Identities=10% Similarity=0.147 Sum_probs=85.5
Q ss_pred CcEEEEEECCCCC-EEEEEe--CCCcEEEEeCCCCeEEEEecccCCcceEEEEEecCCC--CcEEEEEECCCcEEEEECC
Q 004477 51 GCVNAISWNSKGS-LLISGS--DDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETS--DELVVSGAGDAEVRLFNLS 125 (751)
Q Consensus 51 ~~V~~l~~s~dg~-~LaSgs--~Dg~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~s~--~~~l~sgs~Dg~V~vwd~~ 125 (751)
.+|..++|. ||+ .++|.= ..|.++.= +-+.+.+| ..|..+.|.|... -..|+..-....|.||-+.
T Consensus 20 HPvhGlaWT-DGkqVvLT~L~l~~gE~kfG---ds~viGqF-----EhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~ 90 (671)
T PF15390_consen 20 HPVHGLAWT-DGKQVVLTDLQLHNGEPKFG---DSKVIGQF-----EHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLC 90 (671)
T ss_pred ccccceEec-CCCEEEEEeeeeeCCccccC---CccEeecc-----ceeeeeeecCcccCCCCceEEEeccceEEEEEec
Confidence 478899998 555 444431 12222221 12234344 5589999998721 1245555677899999997
Q ss_pred CCCCCCCCCCCCCCceeecccC---Cc--eeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCCCCCCCCCCccceEEEec
Q 004477 126 RFSGRGLDDNAITPSALYQCHT---RR--VKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDL 200 (751)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~h~---~~--V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~~~~~~~~~~~~l~~~ 200 (751)
...... .+.+....++- .+ -..+.|+| ...+|+.-.....-.+++++... ..+..|.
T Consensus 91 ~s~~e~-----~K~l~sQtcEi~e~~pvLpQGCVWHP-k~~iL~VLT~~dvSV~~sV~~d~------------srVkaDi 152 (671)
T PF15390_consen 91 PSTTER-----NKLLMSQTCEIREPFPVLPQGCVWHP-KKAILTVLTARDVSVLPSVHCDS------------SRVKADI 152 (671)
T ss_pred cCcccc-----ccceeeeeeeccCCcccCCCcccccC-CCceEEEEecCceeEeeeeeeCC------------ceEEEec
Confidence 432111 12222222221 11 24577999 44555544433333356665433 1233333
Q ss_pred ccCceecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCC
Q 004477 201 RCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRR 246 (751)
Q Consensus 201 ~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~ 246 (751)
. ..+.|.|.+|.+++.+++++.++.=.-+|||-.
T Consensus 153 ~------------~~G~IhCACWT~DG~RLVVAvGSsLHSyiWd~~ 186 (671)
T PF15390_consen 153 K------------TSGLIHCACWTKDGQRLVVAVGSSLHSYIWDSA 186 (671)
T ss_pred c------------CCceEEEEEecCcCCEEEEEeCCeEEEEEecCc
Confidence 2 346799999999765555555665566789854
No 431
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=85.35 E-value=4 Score=37.62 Aligned_cols=102 Identities=25% Similarity=0.122 Sum_probs=60.2
Q ss_pred HHHHHHHhhhcCCChhHHHHHhHHHHhcccCCCCCchhh------------hhHhHHHHHhhcc-cccchhhhHHHhhHH
Q 004477 366 LVEIARNSLEEGKHPYYGIEACNEVLEGHLSGIGPMLRH------------ECLCIRAALLLKR-KWKNDAQMAIRDCYN 432 (751)
Q Consensus 366 l~~~~~~~~~~g~~~~~ai~~~~~~i~~~~~~~~~~~~~------------~~~~~ra~~~~~r-~w~~d~y~al~d~~~ 432 (751)
+...+......+. ...++..+.+++..+....-+.+.. ..|......+... .=.|+.-.|++.|..
T Consensus 9 ~~~~a~~~~~~~~-~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~~l~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 87 (146)
T PF03704_consen 9 LVREARAAARAGD-PEEAIELLEEALALYRGDFLPDLDDEEWVEPERERLRELYLDALERLAEALLEAGDYEEALRLLQR 87 (146)
T ss_dssp HHHHHHHHHHTT--HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHCCC-HHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHH
Confidence 3333444444443 4566777777777665543333221 1111111111110 114456678899999
Q ss_pred HhcCCCCCcchHHHHHHHHHHhcchHHHHHHHHHhc
Q 004477 433 ARRIDSSSFRAHLYMSEALEQLCKYKEALDFAIAAQ 468 (751)
Q Consensus 433 a~~~~~~~~~a~~~~~~~l~~l~~~~~a~~~~~~~~ 468 (751)
++.+||.+-.+|..+++++...|+..+|+.......
T Consensus 88 ~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~ 123 (146)
T PF03704_consen 88 ALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYR 123 (146)
T ss_dssp HHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHH
Confidence 999999999999999999999999999998776443
No 432
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=85.08 E-value=2.5 Score=42.22 Aligned_cols=54 Identities=17% Similarity=0.356 Sum_probs=39.2
Q ss_pred eeccCCCCEEEEccCCCcEEEEecCC--------------------------eeeeeeccCCCceEEEEecCCceEEecC
Q 004477 633 SFLGQRGDYIASGSDDGRWFIWEKQT--------------------------VVNCVQCHPFDCVVATSGIDNTIKIWTP 686 (751)
Q Consensus 633 ~~~~~~~~~v~sgs~dg~~~iW~~~~--------------------------~v~~v~~~p~~~~las~~~d~~v~~W~~ 686 (751)
+|+..++.||++-..+|.+||||+.+ .|..+..+.+|.-|++-+. +....|++
T Consensus 16 ~~l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~lsn-g~~y~y~~ 94 (219)
T PF07569_consen 16 SFLECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLSN-GDSYSYSP 94 (219)
T ss_pred EEEEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEeC-CCEEEecc
Confidence 46677899999999999999999877 2344566667754555543 55677776
Q ss_pred C
Q 004477 687 S 687 (751)
Q Consensus 687 ~ 687 (751)
.
T Consensus 95 ~ 95 (219)
T PF07569_consen 95 D 95 (219)
T ss_pred c
Confidence 4
No 433
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=85.00 E-value=11 Score=42.25 Aligned_cols=120 Identities=15% Similarity=0.090 Sum_probs=72.1
Q ss_pred CCCcEEEEEECCC----CCEEEEEeCCCcEEEEeCC-----CCeEEEEecccCC---c--ceEEEEEecCCCCcEEEEEE
Q 004477 49 HQGCVNAISWNSK----GSLLISGSDDTHINVWSYS-----SRKLLHSIETGHS---A--NVFCTKFVPETSDELVVSGA 114 (751)
Q Consensus 49 H~~~V~~l~~s~d----g~~LaSgs~Dg~I~IWd~~-----~~~~~~~l~~~h~---~--~V~~v~fsp~s~~~~l~sgs 114 (751)
.-..|..+.|.|- ..-|++..-.+.|.||-+. +.+.+..- +.+- - --..+-|+|. ...|+.-.
T Consensus 55 qFEhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~s~~e~~K~l~sQ-tcEi~e~~pvLpQGCVWHPk--~~iL~VLT 131 (671)
T PF15390_consen 55 QFEHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCPSTTERNKLLMSQ-TCEIREPFPVLPQGCVWHPK--KAILTVLT 131 (671)
T ss_pred ccceeeeeeecCcccCCCCceEEEeccceEEEEEeccCccccccceeee-eeeccCCcccCCCcccccCC--CceEEEEe
Confidence 3456889999984 3244444556799999864 23332221 1111 1 1235679999 46666544
Q ss_pred CCCcEEEEECCCCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCC
Q 004477 115 GDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQG 180 (751)
Q Consensus 115 ~Dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~ 180 (751)
....-.++++..... .++.--.-.+.|.|.+|.+++.++++..+..=.-++||-...
T Consensus 132 ~~dvSV~~sV~~d~s---------rVkaDi~~~G~IhCACWT~DG~RLVVAvGSsLHSyiWd~~qK 188 (671)
T PF15390_consen 132 ARDVSVLPSVHCDSS---------RVKADIKTSGLIHCACWTKDGQRLVVAVGSSLHSYIWDSAQK 188 (671)
T ss_pred cCceeEeeeeeeCCc---------eEEEeccCCceEEEEEecCcCCEEEEEeCCeEEEEEecCchh
Confidence 444445666664321 122222457889999999977777766666666778986543
No 434
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=84.98 E-value=18 Score=37.21 Aligned_cols=124 Identities=19% Similarity=0.062 Sum_probs=80.6
Q ss_pred CcchhHHHHHHHHHhhhcCCChhHHHHHhHHHHhcccCCCCCchhhhhHhHHHHHhhcccccchhhhHHHhhHHHhcCCC
Q 004477 359 GLGKCRMLVEIARNSLEEGKHPYYGIEACNEVLEGHLSGIGPMLRHECLCIRAALLLKRKWKNDAQMAIRDCYNARRIDS 438 (751)
Q Consensus 359 ~~~~~~~l~~~~~~~~~~g~~~~~ai~~~~~~i~~~~~~~~~~~~~~~~~~ra~~~~~r~w~~d~y~al~d~~~a~~~~~ 438 (751)
.|...+.-.-.+...+..+. +..|..+|..++...+++ ...+..-|.+++-..=..+.-.+-.=-.+++.+||
T Consensus 152 nP~d~egW~~Lg~~ym~~~~-~~~A~~AY~~A~rL~g~n------~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~ 224 (287)
T COG4235 152 NPGDAEGWDLLGRAYMALGR-ASDALLAYRNALRLAGDN------PEILLGLAEALYYQAGQQMTAKARALLRQALALDP 224 (287)
T ss_pred CCCCchhHHHHHHHHHHhcc-hhHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCC
Confidence 44444444444555555555 778889999998877665 23334334444322211111222222567899999
Q ss_pred CCcchHHHHHHHHHHhcchHHHHHHHHHhcccCCCChhhhHHHHHHHHHHHHHH
Q 004477 439 SSFRAHLYMSEALEQLCKYKEALDFAIAAQCLDPSNSVMAEKVENIKKHIAAAE 492 (751)
Q Consensus 439 ~~~~a~~~~~~~l~~l~~~~~a~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~ 492 (751)
.++++.++++...++-|++++|....+.+....|.... ....+.+.|..+.
T Consensus 225 ~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~~---rr~~ie~~ia~~~ 275 (287)
T COG4235 225 ANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLLPADDP---RRSLIERSIARAL 275 (287)
T ss_pred ccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCCCCCc---hHHHHHHHHHHHH
Confidence 99999999999999999999999999998888887654 3444455554443
No 435
>PRK13616 lipoprotein LpqB; Provisional
Probab=84.96 E-value=26 Score=40.57 Aligned_cols=117 Identities=11% Similarity=0.036 Sum_probs=62.1
Q ss_pred EEEEEECCCCCEEEEEeCC-CcEEEEeCCCCeEEEEe--c-----ccCCcceEEEEEecCCCCcEEEEEECCCcEEEEEC
Q 004477 53 VNAISWNSKGSLLISGSDD-THINVWSYSSRKLLHSI--E-----TGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNL 124 (751)
Q Consensus 53 V~~l~~s~dg~~LaSgs~D-g~I~IWd~~~~~~~~~l--~-----~~h~~~V~~v~fsp~s~~~~l~sgs~Dg~V~vwd~ 124 (751)
...-.|+|+|+.|++.++. ..+++.+......+..+ . ....+.|..++|+|+ |..|+... ++.|.|=-+
T Consensus 399 ~t~PsWspDG~~lw~v~dg~~~~~v~~~~~~gql~~~~vd~ge~~~~~~g~Issl~wSpD--G~RiA~i~-~g~v~Va~V 475 (591)
T PRK13616 399 LTRPSWSLDADAVWVVVDGNTVVRVIRDPATGQLARTPVDASAVASRVPGPISELQLSRD--GVRAAMII-GGKVYLAVV 475 (591)
T ss_pred CCCceECCCCCceEEEecCcceEEEeccCCCceEEEEeccCchhhhccCCCcCeEEECCC--CCEEEEEE-CCEEEEEEE
Confidence 6788999999988887643 22333332211122111 0 023567999999999 77777554 477776433
Q ss_pred CCC-CCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEec
Q 004477 125 SRF-SGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDF 177 (751)
Q Consensus 125 ~~~-~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDl 177 (751)
... .+.. .. ..+......-...+.++.|.. ++.++ .+..++...+|.+
T Consensus 476 vr~~~G~~-~l--~~~~~l~~~l~~~~~~l~W~~-~~~L~-V~~~~~~~~v~~v 524 (591)
T PRK13616 476 EQTEDGQY-AL--TNPREVGPGLGDTAVSLDWRT-GDSLV-VGRSDPEHPVWYV 524 (591)
T ss_pred EeCCCCce-ee--cccEEeecccCCccccceEec-CCEEE-EEecCCCCceEEE
Confidence 321 1210 00 011112223344468899998 44554 5554444444443
No 436
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=84.86 E-value=11 Score=39.66 Aligned_cols=115 Identities=11% Similarity=0.025 Sum_probs=67.2
Q ss_pred ccEEeccCCCcEEEEEECCCCCEEEEEeC-CCcEEEEeCCC--C----eEEEEecccCCcceEEEEEecCCCCcEEEEEE
Q 004477 42 QERELEGHQGCVNAISWNSKGSLLISGSD-DTHINVWSYSS--R----KLLHSIETGHSANVFCTKFVPETSDELVVSGA 114 (751)
Q Consensus 42 ~~~~L~gH~~~V~~l~~s~dg~~LaSgs~-Dg~I~IWd~~~--~----~~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs 114 (751)
.++.+.+|-..-|.|+||||++.|..+.. .+.|.-|++.. + +....+...+.+..-.++.-.+ |.+.+++-
T Consensus 154 ~~~l~~~~~~~~NGla~SpDg~tly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDad--G~lw~~a~ 231 (307)
T COG3386 154 VVRLLDDDLTIPNGLAFSPDGKTLYVADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDAD--GNLWVAAV 231 (307)
T ss_pred EEEeecCcEEecCceEECCCCCEEEEEeCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCC--CCEEEecc
Confidence 44455566667789999999987766644 46777777652 1 1111111223344444444444 66665444
Q ss_pred CCC-cEEEEECCCCCCCCCCCCCCCCceeecccCCceeEEEEec-CCCCEEEEEeCC
Q 004477 115 GDA-EVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEV-GNPHVVWSASED 169 (751)
Q Consensus 115 ~Dg-~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp-~~~~~l~s~s~D 169 (751)
..| .|.+|+.. + +++..+.-....+++++|-- +...+++++...
T Consensus 232 ~~g~~v~~~~pd-G----------~l~~~i~lP~~~~t~~~FgG~~~~~L~iTs~~~ 277 (307)
T COG3386 232 WGGGRVVRFNPD-G----------KLLGEIKLPVKRPTNPAFGGPDLNTLYITSARS 277 (307)
T ss_pred cCCceEEEECCC-C----------cEEEEEECCCCCCccceEeCCCcCEEEEEecCC
Confidence 443 88888887 2 45666666667788888853 223455555443
No 437
>PRK10115 protease 2; Provisional
Probab=84.71 E-value=94 Score=36.94 Aligned_cols=72 Identities=3% Similarity=-0.010 Sum_probs=45.7
Q ss_pred cEEEEEECCCCCEEEEEe-----CCCcEEEEeCCCCeEEEEecccCCcceEEEEEecCCCCcEEEEEECC-----CcEEE
Q 004477 52 CVNAISWNSKGSLLISGS-----DDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGD-----AEVRL 121 (751)
Q Consensus 52 ~V~~l~~s~dg~~LaSgs-----~Dg~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~D-----g~V~v 121 (751)
.+..+.|+|||++||-+. ....|+|-|+.++..+.....+ . -..++|.++. ..++++.-.+ ..|..
T Consensus 128 ~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~~-~--~~~~~w~~D~-~~~~y~~~~~~~~~~~~v~~ 203 (686)
T PRK10115 128 TLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELLDN-V--EPSFVWANDS-WTFYYVRKHPVTLLPYQVWR 203 (686)
T ss_pred EEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCccccC-c--ceEEEEeeCC-CEEEEEEecCCCCCCCEEEE
Confidence 466789999999888653 2334888899888644333122 2 2569999983 2344444322 35777
Q ss_pred EECCCC
Q 004477 122 FNLSRF 127 (751)
Q Consensus 122 wd~~~~ 127 (751)
|++.+.
T Consensus 204 h~lgt~ 209 (686)
T PRK10115 204 HTIGTP 209 (686)
T ss_pred EECCCC
Confidence 788764
No 438
>PRK11189 lipoprotein NlpI; Provisional
Probab=84.62 E-value=4 Score=42.90 Aligned_cols=90 Identities=18% Similarity=0.075 Sum_probs=71.4
Q ss_pred HHHHHhHHHHhcccCCCCCchhhhhHhHHHHHhhcccccchhhhHHHhhHHHhcCCCCCcchHHHHHHHHHHhcchHHHH
Q 004477 382 YGIEACNEVLEGHLSGIGPMLRHECLCIRAALLLKRKWKNDAQMAIRDCYNARRIDSSSFRAHLYMSEALEQLCKYKEAL 461 (751)
Q Consensus 382 ~ai~~~~~~i~~~~~~~~~~~~~~~~~~ra~~~~~r~w~~d~y~al~d~~~a~~~~~~~~~a~~~~~~~l~~l~~~~~a~ 461 (751)
.+|..++++|...+. .+......|.+|+..+...+ +...|+.+..+++.++|.++.+++.++..+..+|++.+|.
T Consensus 44 ~~i~~~~~~l~~~~~--~~~~~a~~~~~~g~~~~~~g---~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~ 118 (296)
T PRK11189 44 VILARLNQILASRDL--TDEERAQLHYERGVLYDSLG---LRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAY 118 (296)
T ss_pred HHHHHHHHHHccccC--CcHhhHHHHHHHHHHHHHCC---CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHH
Confidence 456677778765432 23333456778888877654 3557888899999999999999999999999999999999
Q ss_pred HHHHHhcccCCCChh
Q 004477 462 DFAIAAQCLDPSNSV 476 (751)
Q Consensus 462 ~~~~~~~~~~p~~~~ 476 (751)
..+.......|.+..
T Consensus 119 ~~~~~Al~l~P~~~~ 133 (296)
T PRK11189 119 EAFDSVLELDPTYNY 133 (296)
T ss_pred HHHHHHHHhCCCCHH
Confidence 999999988897653
No 439
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=84.58 E-value=10 Score=44.67 Aligned_cols=94 Identities=10% Similarity=-0.020 Sum_probs=72.4
Q ss_pred hhhcCCChhHHHHHhHHHHhcccCCCCCchhhhhHhHHHHHhhcccccchhhhHHHhhHHHhcCCCCCcchHHHHHHHHH
Q 004477 373 SLEEGKHPYYGIEACNEVLEGHLSGIGPMLRHECLCIRAALLLKRKWKNDAQMAIRDCYNARRIDSSSFRAHLYMSEALE 452 (751)
Q Consensus 373 ~~~~g~~~~~ai~~~~~~i~~~~~~~~~~~~~~~~~~ra~~~~~r~w~~d~y~al~d~~~a~~~~~~~~~a~~~~~~~l~ 452 (751)
....|. +-.+...+..++...+.. ...+.++|..+.+.+- .-.|+.-+..++..+|.+..+++.++.+|.
T Consensus 96 ~~~~g~-~~ea~~~l~~~~~~~Pd~------~~a~~~~a~~L~~~~~---~eeA~~~~~~~l~~~p~~~~~~~~~a~~l~ 165 (694)
T PRK15179 96 LEAAHR-SDEGLAVWRGIHQRFPDS------SEAFILMLRGVKRQQG---IEAGRAEIELYFSGGSSSAREILLEAKSWD 165 (694)
T ss_pred HHHcCC-cHHHHHHHHHHHhhCCCc------HHHHHHHHHHHHHhcc---HHHHHHHHHHHhhcCCCCHHHHHHHHHHHH
Confidence 333444 555666666777666554 3355677777776665 556889999999999999999999999999
Q ss_pred HhcchHHHHHHHHHhcccCCCChh
Q 004477 453 QLCKYKEALDFAIAAQCLDPSNSV 476 (751)
Q Consensus 453 ~l~~~~~a~~~~~~~~~~~p~~~~ 476 (751)
++|++.+|.++.+++....|...+
T Consensus 166 ~~g~~~~A~~~y~~~~~~~p~~~~ 189 (694)
T PRK15179 166 EIGQSEQADACFERLSRQHPEFEN 189 (694)
T ss_pred HhcchHHHHHHHHHHHhcCCCcHH
Confidence 999999999999998877776553
No 440
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=84.56 E-value=23 Score=41.35 Aligned_cols=160 Identities=10% Similarity=0.084 Sum_probs=93.8
Q ss_pred CCEEEEEeCCCcEEEEeCCCCeEEE------Eecc---------------cCCcceEEEEEecCCCCcEEEEEECCCcEE
Q 004477 62 GSLLISGSDDTHINVWSYSSRKLLH------SIET---------------GHSANVFCTKFVPETSDELVVSGAGDAEVR 120 (751)
Q Consensus 62 g~~LaSgs~Dg~I~IWd~~~~~~~~------~l~~---------------~h~~~V~~v~fsp~s~~~~l~sgs~Dg~V~ 120 (751)
.++|..|. .+.|.||++..-.... .+.. .-...|+-+...--.+...|+.|..||.|.
T Consensus 49 ~n~LFiA~-~s~I~Vy~~d~l~~~p~~~p~~~~~t~p~~~~~~D~~~s~~p~PHtIN~i~v~~lg~~EVLl~c~DdG~V~ 127 (717)
T PF08728_consen 49 RNLLFIAY-QSEIYVYDPDGLTQLPSRKPCLRFDTKPEFTSTPDRLISTWPFPHTINFIKVGDLGGEEVLLLCTDDGDVL 127 (717)
T ss_pred CCEEEEEE-CCEEEEEecCCcccccccccccccccCccccccccccccCCCCCceeeEEEecccCCeeEEEEEecCCeEE
Confidence 66777765 5689999975322211 1100 011224444444333357899999999999
Q ss_pred EEECCCCC-----C-CC----CCCCCCCCceeecccCCceeEEEEe--cCCCCEEEEEeCCCcEEEEecCCCCCCCCCCC
Q 004477 121 LFNLSRFS-----G-RG----LDDNAITPSALYQCHTRRVKKLAVE--VGNPHVVWSASEDGTLRQHDFRQGSSCPPAGS 188 (751)
Q Consensus 121 vwd~~~~~-----~-~~----~~~~~~~~~~~~~~h~~~V~~l~~s--p~~~~~l~s~s~Dg~I~iwDlr~~~~~~~~~~ 188 (751)
+|.++.-. . .. ......+|...+. -...+++++++ . ..++||.++.-..|.+|-+........
T Consensus 128 ~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~-v~~SaWGLdIh~~~-~~rlIAVSsNs~~VTVFaf~l~~~r~~--- 202 (717)
T PF08728_consen 128 AYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLR-VGASAWGLDIHDYK-KSRLIAVSSNSQEVTVFAFALVDERFY--- 202 (717)
T ss_pred EEEHHHHHHHHHhhccccccccccccCCCCeEee-cCCceeEEEEEecC-cceEEEEecCCceEEEEEEeccccccc---
Confidence 99774210 0 00 0001123443343 34578999997 5 567888888888888886654311000
Q ss_pred CCCccceEEEecccCceecccCCCCCccceEEEEEeCCC--Cc---EEEEEeCCCeEEEEeCC
Q 004477 189 SHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTR--PH---LLLVGGSDAFARLYDRR 246 (751)
Q Consensus 189 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~--~~---~l~sgs~D~~IriwD~~ 246 (751)
......+...|.+|+|-+++ +. .+++++-.|.+.+|++.
T Consensus 203 -------------------~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I~ 246 (717)
T PF08728_consen 203 -------------------HVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKIK 246 (717)
T ss_pred -------------------cccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEEE
Confidence 00001144567888887753 22 78889999999999883
No 441
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=84.20 E-value=13 Score=43.41 Aligned_cols=117 Identities=13% Similarity=0.157 Sum_probs=78.3
Q ss_pred cEEEEEECC--CCCEEEEEeCCCcEEEEeCCC-------C----eE-------EEEecccCCcceEEEEEe--cCCCCcE
Q 004477 52 CVNAISWNS--KGSLLISGSDDTHINVWSYSS-------R----KL-------LHSIETGHSANVFCTKFV--PETSDEL 109 (751)
Q Consensus 52 ~V~~l~~s~--dg~~LaSgs~Dg~I~IWd~~~-------~----~~-------~~~l~~~h~~~V~~v~fs--p~s~~~~ 109 (751)
.||.|.... +...|+.|.+||.|.+|.+++ . .. ...+...-...+++++++ .. .++
T Consensus 102 tIN~i~v~~lg~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~v~~SaWGLdIh~~~~--~rl 179 (717)
T PF08728_consen 102 TINFIKVGDLGGEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLRVGASAWGLDIHDYKK--SRL 179 (717)
T ss_pred eeeEEEecccCCeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEeecCCceeEEEEEecCc--ceE
Confidence 577776654 456999999999999996521 0 00 001111234578999998 65 588
Q ss_pred EEEEECCCcEEEEECCCCCCCCCCCCCCCCceeecccCCceeEEEEecCC----CC-EEEEEeCCCcEEEEec
Q 004477 110 VVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGN----PH-VVWSASEDGTLRQHDF 177 (751)
Q Consensus 110 l~sgs~Dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~----~~-~l~s~s~Dg~I~iwDl 177 (751)
||.++.-..|.||-......+.. ...-..|...|-+|+|-+++ ++ .+++++-.|.+.+|++
T Consensus 180 IAVSsNs~~VTVFaf~l~~~r~~-------~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 180 IAVSSNSQEVTVFAFALVDERFY-------HVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred EEEecCCceEEEEEEeccccccc-------cccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 89988889999987765322211 11111266778899998743 22 7778899999999988
No 442
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=84.14 E-value=2 Score=33.69 Aligned_cols=65 Identities=18% Similarity=0.146 Sum_probs=50.4
Q ss_pred HHHHHHHHhhhcCCChhHHHHHhHHHHhcccCCCCCchhhhhHhHHHHHhhcccccchhhhHHHhhHHHhcCCC
Q 004477 365 MLVEIARNSLEEGKHPYYGIEACNEVLEGHLSGIGPMLRHECLCIRAALLLKRKWKNDAQMAIRDCYNARRIDS 438 (751)
Q Consensus 365 ~l~~~~~~~~~~g~~~~~ai~~~~~~i~~~~~~~~~~~~~~~~~~ra~~~~~r~w~~d~y~al~d~~~a~~~~~ 438 (751)
.+...|...+..++ |..|+..|.++|...+.. ...|.+++.+++..+= +--.|+.++.++++++|
T Consensus 5 ~~~~~g~~~~~~~~-~~~A~~~~~~ai~~~p~~------~~~~~~~g~~~~~~~~--~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 5 AWYNLGQIYFQQGD-YEEAIEYFEKAIELDPNN------AEAYYNLGLAYMKLGK--DYEEAIEDFEKALKLDP 69 (69)
T ss_dssp HHHHHHHHHHHTTH-HHHHHHHHHHHHHHSTTH------HHHHHHHHHHHHHTTT--HHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHcCC-HHHHHHHHHHHHHcCCCC------HHHHHHHHHHHHHhCc--cHHHHHHHHHHHHHcCc
Confidence 34556677777777 889999999999976554 4588999999998861 24468899999998887
No 443
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=84.13 E-value=1.5 Score=28.73 Aligned_cols=32 Identities=38% Similarity=0.575 Sum_probs=27.4
Q ss_pred chHHHHHHHHHHhcchHHHHHHHHHhcccCCC
Q 004477 442 RAHLYMSEALEQLCKYKEALDFAIAAQCLDPS 473 (751)
Q Consensus 442 ~a~~~~~~~l~~l~~~~~a~~~~~~~~~~~p~ 473 (751)
++++.++.++..++++++|+.+.+++....|.
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~ 33 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDPN 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcC
Confidence 57889999999999999999999988877774
No 444
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=83.72 E-value=3.9 Score=45.80 Aligned_cols=99 Identities=16% Similarity=0.062 Sum_probs=78.3
Q ss_pred hhHHHHHhHHHHhcccCCCCCchhhhhHhHHHHHhhcccccchhhhHHHhhHHHhcCCCCCcchHHHHHHHHHHhcchHH
Q 004477 380 PYYGIEACNEVLEGHLSGIGPMLRHECLCIRAALLLKRKWKNDAQMAIRDCYNARRIDSSSFRAHLYMSEALEQLCKYKE 459 (751)
Q Consensus 380 ~~~ai~~~~~~i~~~~~~~~~~~~~~~~~~ra~~~~~r~w~~d~y~al~d~~~a~~~~~~~~~a~~~~~~~l~~l~~~~~ 459 (751)
|..|+..|..++...++. ...|+|-|..|-.+ |++-+|+.--.+|+.++|+.+.|+-.|+-||-.+|+..|
T Consensus 268 ~d~Avs~Y~rAl~lrpn~------A~a~gNla~iYyeq---G~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~e 338 (966)
T KOG4626|consen 268 FDRAVSCYLRALNLRPNH------AVAHGNLACIYYEQ---GLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGSVTE 338 (966)
T ss_pred chHHHHHHHHHHhcCCcc------hhhccceEEEEecc---ccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHH
Confidence 677888888888765543 34556666555554 458899999999999999999999999999999999999
Q ss_pred HHHHHHHhcccCCCChhhhHHHHHHHHH
Q 004477 460 ALDFAIAAQCLDPSNSVMAEKVENIKKH 487 (751)
Q Consensus 460 a~~~~~~~~~~~p~~~~~~~~~~~~~~~ 487 (751)
|..|..+..+.-|.++.....+..+.+.
T Consensus 339 a~~cYnkaL~l~p~hadam~NLgni~~E 366 (966)
T KOG4626|consen 339 AVDCYNKALRLCPNHADAMNNLGNIYRE 366 (966)
T ss_pred HHHHHHHHHHhCCccHHHHHHHHHHHHH
Confidence 9999999998889887655555444443
No 445
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=83.59 E-value=4.8 Score=40.82 Aligned_cols=96 Identities=17% Similarity=0.058 Sum_probs=75.0
Q ss_pred HHHHHHHhhhcCCChhHHHHHhHHHHhcccCCCCCchhhhhHhHHHHHhhcccccchhhhHHHhhHHH-------hcCCC
Q 004477 366 LVEIARNSLEEGKHPYYGIEACNEVLEGHLSGIGPMLRHECLCIRAALLLKRKWKNDAQMAIRDCYNA-------RRIDS 438 (751)
Q Consensus 366 l~~~~~~~~~~g~~~~~ai~~~~~~i~~~~~~~~~~~~~~~~~~ra~~~~~r~w~~d~y~al~d~~~a-------~~~~~ 438 (751)
+-..+-..+-.|. |..|...+...|..++++...+ --+-|-|..+.+-.||..| .+-.|
T Consensus 144 ~Y~~A~~~~ksgd-y~~A~~~F~~fi~~YP~s~~~~-------------nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P 209 (262)
T COG1729 144 LYNAALDLYKSGD-YAEAEQAFQAFIKKYPNSTYTP-------------NAYYWLGESLYAQGDYEDAAYIFARVVKDYP 209 (262)
T ss_pred HHHHHHHHHHcCC-HHHHHHHHHHHHHcCCCCcccc-------------hhHHHHHHHHHhcccchHHHHHHHHHHHhCC
Confidence 5566777777888 9999999999999999873211 1234778888887777666 34555
Q ss_pred CCcc---hHHHHHHHHHHhcchHHHHHHHHHhcccCCCCh
Q 004477 439 SSFR---AHLYMSEALEQLCKYKEALDFAIAAQCLDPSNS 475 (751)
Q Consensus 439 ~~~~---a~~~~~~~l~~l~~~~~a~~~~~~~~~~~p~~~ 475 (751)
.++| +.+.++.|+..+++-.+|...+.++..+||...
T Consensus 210 ~s~KApdallKlg~~~~~l~~~d~A~atl~qv~k~YP~t~ 249 (262)
T COG1729 210 KSPKAPDALLKLGVSLGRLGNTDEACATLQQVIKRYPGTD 249 (262)
T ss_pred CCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCCH
Confidence 5555 589999999999999999999999999999654
No 446
>PHA03098 kelch-like protein; Provisional
Probab=83.55 E-value=28 Score=39.89 Aligned_cols=64 Identities=16% Similarity=0.172 Sum_probs=33.9
Q ss_pred CCCEEEEEeCC-----CcEEEEeCCCCeEEEEecccCCcceEEEEEecCCCCcEEEEEECC------CcEEEEECCCC
Q 004477 61 KGSLLISGSDD-----THINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGD------AEVRLFNLSRF 127 (751)
Q Consensus 61 dg~~LaSgs~D-----g~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~D------g~V~vwd~~~~ 127 (751)
++++.+.||.+ ..+..||+.+.+....-...+...-.+++.. + +.+++.||.+ ..+..||+.+.
T Consensus 342 ~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~lp~~r~~~~~~~~-~--~~iYv~GG~~~~~~~~~~v~~yd~~t~ 416 (534)
T PHA03098 342 NNRIYVIGGIYNSISLNTVESWKPGESKWREEPPLIFPRYNPCVVNV-N--NLIYVIGGISKNDELLKTVECFSLNTN 416 (534)
T ss_pred CCEEEEEeCCCCCEecceEEEEcCCCCceeeCCCcCcCCccceEEEE-C--CEEEEECCcCCCCcccceEEEEeCCCC
Confidence 56777888765 3466788776543221101111111222222 3 5777777632 45788888754
No 447
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=83.38 E-value=3.8 Score=37.87 Aligned_cols=66 Identities=23% Similarity=0.181 Sum_probs=54.4
Q ss_pred HHHHHhhcccccchhhhHHHhhHHHhcCCCCCcchHHHHHHHHHHhcchHHHHHHHHHhcccCCCChhh
Q 004477 409 IRAALLLKRKWKNDAQMAIRDCYNARRIDSSSFRAHLYMSEALEQLCKYKEALDFAIAAQCLDPSNSVM 477 (751)
Q Consensus 409 ~ra~~~~~r~w~~d~y~al~d~~~a~~~~~~~~~a~~~~~~~l~~l~~~~~a~~~~~~~~~~~p~~~~~ 477 (751)
+++.++... |+.-.|+..+..++.++|.+..+++.++.++..+|++.+|..+........|.+...
T Consensus 29 ~~g~~~~~~---g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~~~a 94 (144)
T PRK15359 29 ASGYASWQE---GDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDASHPEP 94 (144)
T ss_pred HHHHHHHHc---CCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHH
Confidence 444444443 334568888999999999999999999999999999999999999999888877543
No 448
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=83.09 E-value=6.3 Score=41.09 Aligned_cols=111 Identities=14% Similarity=0.158 Sum_probs=88.5
Q ss_pred ccCcchhHHHHHHHHHhhhcCCChhHHHHHhHHHHhcccCCCCCchhhhhHhHHHHHhhcccccchhhhHHHhhHHHhcC
Q 004477 357 ATGLGKCRMLVEIARNSLEEGKHPYYGIEACNEVLEGHLSGIGPMLRHECLCIRAALLLKRKWKNDAQMAIRDCYNARRI 436 (751)
Q Consensus 357 ~~~~~~~~~l~~~~~~~~~~g~~~~~ai~~~~~~i~~~~~~~~~~~~~~~~~~ra~~~~~r~w~~d~y~al~d~~~a~~~ 436 (751)
+..+..++...+.++..+..++ |..|+-.|-.+|.+-+++ ...+..||+.|+--+- .-+|+.|-.+.+++
T Consensus 32 ~~~~advekhlElGk~lla~~Q-~sDALt~yHaAve~dp~~------Y~aifrRaT~yLAmGk---sk~al~Dl~rVlel 101 (504)
T KOG0624|consen 32 TASPADVEKHLELGKELLARGQ-LSDALTHYHAAVEGDPNN------YQAIFRRATVYLAMGK---SKAALQDLSRVLEL 101 (504)
T ss_pred cCCHHHHHHHHHHHHHHHHhhh-HHHHHHHHHHHHcCCchh------HHHHHHHHHHHhhhcC---CccchhhHHHHHhc
Confidence 4466677888888999999999 888899999999876554 3455678877775432 45789999999999
Q ss_pred CCCCcchHHHHHHHHHHhcchHHHHHHHHHhcccCCCChhh
Q 004477 437 DSSSFRAHLYMSEALEQLCKYKEALDFAIAAQCLDPSNSVM 477 (751)
Q Consensus 437 ~~~~~~a~~~~~~~l~~l~~~~~a~~~~~~~~~~~p~~~~~ 477 (751)
-|....|.......|+..|.+.+|..-...+...-|+....
T Consensus 102 KpDF~~ARiQRg~vllK~Gele~A~~DF~~vl~~~~s~~~~ 142 (504)
T KOG0624|consen 102 KPDFMAARIQRGVVLLKQGELEQAEADFDQVLQHEPSNGLV 142 (504)
T ss_pred CccHHHHHHHhchhhhhcccHHHHHHHHHHHHhcCCCcchh
Confidence 99999999999999999999999998777777777755543
No 449
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=82.69 E-value=96 Score=35.52 Aligned_cols=136 Identities=13% Similarity=0.086 Sum_probs=72.6
Q ss_pred ccchhhhccccccEEeccCCCcEEEEEECC--CCCEEEEEeCCCcEEEEeCCCCeEEEEecccCCcceEE----------
Q 004477 31 QMHSSLVRRLSQERELEGHQGCVNAISWNS--KGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFC---------- 98 (751)
Q Consensus 31 ~~~~~~i~~~~~~~~L~gH~~~V~~l~~s~--dg~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~V~~---------- 98 (751)
++...-+.++++.-.++-.. ...+.-+| .+..|..++.++.|.-.|..+|+.+.++...-...+..
T Consensus 38 qI~~~nv~~L~~~W~~~~g~--~~g~~stPvv~~g~vyv~s~~g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg 115 (527)
T TIGR03075 38 QINTENVKKLQPAWTFSLGK--LRGQESQPLVVDGVMYVTTSYSRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRG 115 (527)
T ss_pred hcChhhhccceEEEEEECCC--CCCcccCCEEECCEEEEECCCCcEEEEECCCCceeeEecCCCCccccccccccccccc
Confidence 34445566666665554321 11112222 24567777778899999999999988773221111211
Q ss_pred EEEecCCCCcEEEEEECCCcEEEEECCCCCCCCCCCCCCCCceeec--ccC--CceeEEEEecCCCCEEEEEe-----CC
Q 004477 99 TKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQ--CHT--RRVKKLAVEVGNPHVVWSAS-----ED 169 (751)
Q Consensus 99 v~fsp~s~~~~l~sgs~Dg~V~vwd~~~~~~~~~~~~~~~~~~~~~--~h~--~~V~~l~~sp~~~~~l~s~s-----~D 169 (751)
++.. +..|+.++.|+.|.-.|..++.. +-... .+. ..+.+--.-. ++.+++..+ .+
T Consensus 116 ~av~----~~~v~v~t~dg~l~ALDa~TGk~----------~W~~~~~~~~~~~~~tssP~v~-~g~Vivg~~~~~~~~~ 180 (527)
T TIGR03075 116 VALY----DGKVFFGTLDARLVALDAKTGKV----------VWSKKNGDYKAGYTITAAPLVV-KGKVITGISGGEFGVR 180 (527)
T ss_pred ceEE----CCEEEEEcCCCEEEEEECCCCCE----------EeecccccccccccccCCcEEE-CCEEEEeecccccCCC
Confidence 1121 34677778899999889886522 21111 111 0111110111 334444322 37
Q ss_pred CcEEEEecCCCCCC
Q 004477 170 GTLRQHDFRQGSSC 183 (751)
Q Consensus 170 g~I~iwDlr~~~~~ 183 (751)
|.|..+|.++++..
T Consensus 181 G~v~AlD~~TG~~l 194 (527)
T TIGR03075 181 GYVTAYDAKTGKLV 194 (527)
T ss_pred cEEEEEECCCCcee
Confidence 89999999998754
No 450
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=82.57 E-value=83 Score=34.69 Aligned_cols=159 Identities=13% Similarity=0.094 Sum_probs=90.3
Q ss_pred CCCEEEEEeCCCcEEEEeCCCCeEE---EEecccCCcceEEEEEe---cCCCCcEEEEEECCCcEEEEECCCCCCCCCCC
Q 004477 61 KGSLLISGSDDTHINVWSYSSRKLL---HSIETGHSANVFCTKFV---PETSDELVVSGAGDAEVRLFNLSRFSGRGLDD 134 (751)
Q Consensus 61 dg~~LaSgs~Dg~I~IWd~~~~~~~---~~l~~~h~~~V~~v~fs---p~s~~~~l~sgs~Dg~V~vwd~~~~~~~~~~~ 134 (751)
+...++.||..|.++||++...... .-+...-..+|..+..- +......||. =.-..+.||.+....+.....
T Consensus 36 ~~d~IivGS~~G~LrIy~P~~~~~~~~~lllE~~l~~PILqv~~G~F~s~~~~~~LaV-LhP~kl~vY~v~~~~g~~~~g 114 (418)
T PF14727_consen 36 GSDKIIVGSYSGILRIYDPSGNEFQPEDLLLETQLKDPILQVECGKFVSGSEDLQLAV-LHPRKLSVYSVSLVDGTVEHG 114 (418)
T ss_pred CccEEEEeccccEEEEEccCCCCCCCccEEEEEecCCcEEEEEeccccCCCCcceEEE-ecCCEEEEEEEEecCCCcccC
Confidence 3469999999999999998643311 11112345677777643 4332334444 456788888885433321111
Q ss_pred CCCCCceeecccCCc--eeEEEEecCC----CCEEEEEeCCCcEEEEecCCCCCCCCCCCCCCccceEEEecccCceecc
Q 004477 135 NAITPSALYQCHTRR--VKKLAVEVGN----PHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSL 208 (751)
Q Consensus 135 ~~~~~~~~~~~h~~~--V~~l~~sp~~----~~~l~s~s~Dg~I~iwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 208 (751)
... .+..+..|.-. ...++.-|.+ ..++..-+.||++.+|+-+.-. +..
T Consensus 115 ~~~-~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~----------------f~~-------- 169 (418)
T PF14727_consen 115 NQY-QLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFA----------------FSR-------- 169 (418)
T ss_pred cEE-EEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEE----------------EEE--------
Confidence 111 12223334322 2333333322 3578788999999999865422 000
Q ss_pred cCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCC
Q 004477 209 ADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRML 248 (751)
Q Consensus 209 ~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~ 248 (751)
..+. ..-...+.+.+. ...|++++.+..|..|....+
T Consensus 170 -~lp~-~llPgPl~Y~~~-tDsfvt~sss~~l~~Yky~~L 206 (418)
T PF14727_consen 170 -FLPD-FLLPGPLCYCPR-TDSFVTASSSWTLECYKYQDL 206 (418)
T ss_pred -EcCC-CCCCcCeEEeec-CCEEEEecCceeEEEecHHHh
Confidence 0010 112234677774 689999999999999987544
No 451
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=82.51 E-value=1.8 Score=28.02 Aligned_cols=31 Identities=19% Similarity=0.239 Sum_probs=28.8
Q ss_pred hHHHHHHHHHHhcchHHHHHHHHHhcccCCC
Q 004477 443 AHLYMSEALEQLCKYKEALDFAIAAQCLDPS 473 (751)
Q Consensus 443 a~~~~~~~l~~l~~~~~a~~~~~~~~~~~p~ 473 (751)
|.++++.|+..+|++.+|...++.+...+|.
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~ 32 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKRYPD 32 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence 6789999999999999999999999999984
No 452
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=82.43 E-value=1.4 Score=45.74 Aligned_cols=97 Identities=24% Similarity=0.169 Sum_probs=72.3
Q ss_pred cCcchhHHHHHHHHHhhhcCCChhHHHHHhHHHHhcccCCCCCchhhhhHhHHHHHhhccc-ccchhhhHHHhhHHHhcC
Q 004477 358 TGLGKCRMLVEIARNSLEEGKHPYYGIEACNEVLEGHLSGIGPMLRHECLCIRAALLLKRK-WKNDAQMAIRDCYNARRI 436 (751)
Q Consensus 358 ~~~~~~~~l~~~~~~~~~~g~~~~~ai~~~~~~i~~~~~~~~~~~~~~~~~~ra~~~~~r~-w~~d~y~al~d~~~a~~~ 436 (751)
.-.++.....-.+...+..|. +..+|+.+..+|...+.. ..+|..|+.++++-+ |. +|++||..|+.|
T Consensus 109 e~~eqa~e~k~~A~eAln~G~-~~~ai~~~t~ai~lnp~~------a~l~~kr~sv~lkl~kp~----~airD~d~A~ei 177 (377)
T KOG1308|consen 109 EMMDQANDKKVQASEALNDGE-FDTAIELFTSAIELNPPL------AILYAKRASVFLKLKKPN----AAIRDCDFAIEI 177 (377)
T ss_pred HHHHHHHHHHHHHHHHhcCcc-hhhhhcccccccccCCch------hhhcccccceeeeccCCc----hhhhhhhhhhcc
Confidence 344444555556667777777 778888888888765544 568899999998765 43 689999999999
Q ss_pred CCCCcchHHHHHHHHHHhcchHHHHHHHH
Q 004477 437 DSSSFRAHLYMSEALEQLCKYKEALDFAI 465 (751)
Q Consensus 437 ~~~~~~a~~~~~~~l~~l~~~~~a~~~~~ 465 (751)
+|...+.+-..-+|-..|+...+|...+.
T Consensus 178 n~Dsa~~ykfrg~A~rllg~~e~aa~dl~ 206 (377)
T KOG1308|consen 178 NPDSAKGYKFRGYAERLLGNWEEAAHDLA 206 (377)
T ss_pred CcccccccchhhHHHHHhhchHHHHHHHH
Confidence 99999887777778888887776664443
No 453
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=82.22 E-value=63 Score=33.11 Aligned_cols=160 Identities=16% Similarity=0.155 Sum_probs=86.6
Q ss_pred CCCCEEEEEeCCCcEEEEeCCCCeEEEEecccCCcceEEEEEecCCCCcEEEEEECCCcEEEEECCCCCCCCCCCCCCCC
Q 004477 60 SKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITP 139 (751)
Q Consensus 60 ~dg~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~Dg~V~vwd~~~~~~~~~~~~~~~~ 139 (751)
..++.|+.|..+| |.+++.........+ .+...|..+...|+- +.|+.-+ |+.+.++++..............+
T Consensus 5 ~~~~~L~vGt~~G-l~~~~~~~~~~~~~i--~~~~~I~ql~vl~~~--~~llvLs-d~~l~~~~L~~l~~~~~~~~~~~~ 78 (275)
T PF00780_consen 5 SWGDRLLVGTEDG-LYVYDLSDPSKPTRI--LKLSSITQLSVLPEL--NLLLVLS-DGQLYVYDLDSLEPVSTSAPLAFP 78 (275)
T ss_pred cCCCEEEEEECCC-EEEEEecCCccceeE--eecceEEEEEEeccc--CEEEEEc-CCccEEEEchhhcccccccccccc
Confidence 4678999999998 899998333333333 133449999999984 4555544 599999999864322110000000
Q ss_pred c----eeecccCCceeEEE-EecCCCCEEEEEeCCCcEEEEecCCCCCCCCCCCCCCccceEEEecccCceecccCCCCC
Q 004477 140 S----ALYQCHTRRVKKLA-VEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQ 214 (751)
Q Consensus 140 ~----~~~~~h~~~V~~l~-~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 214 (751)
. .........|...+ -....+...+.....++|.+|.......... ..+.+ +. -
T Consensus 79 ~~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~---------~~~ke--------~~----l 137 (275)
T PF00780_consen 79 KSRSLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFS---------KLLKE--------IS----L 137 (275)
T ss_pred ccccccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCccccc---------ceeEE--------EE----c
Confidence 0 00111223344343 1122333444455556899888776421100 00000 00 1
Q ss_pred ccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCC
Q 004477 215 TLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPP 250 (751)
Q Consensus 215 ~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~ 250 (751)
...+.+++|.+ +.+++|..++ ..+.|+.+...
T Consensus 138 p~~~~~i~~~~---~~i~v~~~~~-f~~idl~~~~~ 169 (275)
T PF00780_consen 138 PDPPSSIAFLG---NKICVGTSKG-FYLIDLNTGSP 169 (275)
T ss_pred CCCcEEEEEeC---CEEEEEeCCc-eEEEecCCCCc
Confidence 25678888884 4777777555 66888886543
No 454
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=82.01 E-value=81 Score=34.15 Aligned_cols=113 Identities=8% Similarity=-0.046 Sum_probs=60.6
Q ss_pred EEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEecccCCcceEEEEEecCCCCcEEEEEECC------------------
Q 004477 55 AISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGD------------------ 116 (751)
Q Consensus 55 ~l~~s~dg~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~D------------------ 116 (751)
...++++.+.|+-......|+--|+.+.+....+ .-...-+-...|..++++.+++-.-..
T Consensus 85 g~~~s~~~~~~~Yv~~~~~l~~vdL~T~e~~~vy-~~p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~ 163 (386)
T PF14583_consen 85 GGFLSPDDRALYYVKNGRSLRRVDLDTLEERVVY-EVPDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYE 163 (386)
T ss_dssp T-EE-TTSSEEEEEETTTEEEEEETTT--EEEEE-E--TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHH
T ss_pred ceEEecCCCeEEEEECCCeEEEEECCcCcEEEEE-ECCcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHh
Confidence 3556677777765555567777788877654333 445666666778766545555433211
Q ss_pred ----CcEEEEECCCCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeC---CC-cEEEEecCC
Q 004477 117 ----AEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASE---DG-TLRQHDFRQ 179 (751)
Q Consensus 117 ----g~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~---Dg-~I~iwDlr~ 179 (751)
+.|.--|+.++ + ..++..-+..+..+.|+|.++.+|+-|-+ |. .-|||-+++
T Consensus 164 a~p~~~i~~idl~tG----------~-~~~v~~~~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~ 223 (386)
T PF14583_consen 164 ARPHCRIFTIDLKTG----------E-RKVVFEDTDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINT 223 (386)
T ss_dssp C---EEEEEEETTT-------------EEEEEEESS-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEET
T ss_pred hCCCceEEEEECCCC----------c-eeEEEecCccccCcccCCCCCCEEEEeccCCcceeceEEEEEEc
Confidence 12333334332 1 33344456778889999999999888765 22 236676554
No 455
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=81.81 E-value=8.2 Score=38.53 Aligned_cols=65 Identities=14% Similarity=0.233 Sum_probs=44.9
Q ss_pred ECCCCCEEEEEeCCCcEEEEeCCCCeEEEEe------cc-------cCCcceEEEEEecCCCCcEEEEEECCCcEEEEEC
Q 004477 58 WNSKGSLLISGSDDTHINVWSYSSRKLLHSI------ET-------GHSANVFCTKFVPETSDELVVSGAGDAEVRLFNL 124 (751)
Q Consensus 58 ~s~dg~~LaSgs~Dg~I~IWd~~~~~~~~~l------~~-------~h~~~V~~v~fsp~s~~~~l~sgs~Dg~V~vwd~ 124 (751)
+..++++|+.-..+|.+++||+.+++.+..- .. .....|..+....+ |.-|++-+ +|..+.|+.
T Consensus 18 l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~--G~PiV~ls-ng~~y~y~~ 94 (219)
T PF07569_consen 18 LECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSN--GVPIVTLS-NGDSYSYSP 94 (219)
T ss_pred EEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCC--CCEEEEEe-CCCEEEecc
Confidence 4457889999999999999999988765432 11 24456777777655 56666554 366677776
Q ss_pred C
Q 004477 125 S 125 (751)
Q Consensus 125 ~ 125 (751)
.
T Consensus 95 ~ 95 (219)
T PF07569_consen 95 D 95 (219)
T ss_pred c
Confidence 6
No 456
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=81.76 E-value=31 Score=38.09 Aligned_cols=133 Identities=12% Similarity=0.133 Sum_probs=82.1
Q ss_pred ccchhhhccccccEEeccCCCcEEEEEECCCC--------CEEEEEeCCCcEEEEeCC-CCeEEEEecccCCcceEEEEE
Q 004477 31 QMHSSLVRRLSQERELEGHQGCVNAISWNSKG--------SLLISGSDDTHINVWSYS-SRKLLHSIETGHSANVFCTKF 101 (751)
Q Consensus 31 ~~~~~~i~~~~~~~~L~gH~~~V~~l~~s~dg--------~~LaSgs~Dg~I~IWd~~-~~~~~~~l~~~h~~~V~~v~f 101 (751)
+.+...|.+.+.+-+..-|.+. -+.|+|+- +.|+ |=.+..|.-.|+. .|..+... ..+..++--.|
T Consensus 491 kLykmDIErGkvveeW~~~ddv--vVqy~p~~kf~qmt~eqtlv-GlS~~svFrIDPR~~gNKi~v~--esKdY~tKn~F 565 (776)
T COG5167 491 KLYKMDIERGKVVEEWDLKDDV--VVQYNPYFKFQQMTDEQTLV-GLSDYSVFRIDPRARGNKIKVV--ESKDYKTKNKF 565 (776)
T ss_pred cceeeecccceeeeEeecCCcc--eeecCCchhHHhcCccceEE-eecccceEEecccccCCceeee--eehhccccccc
Confidence 4455678899999999888766 67888842 3344 4445555555764 23222221 11222222223
Q ss_pred ecC--CCCcEEEEEECCCcEEEEECCCCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCC
Q 004477 102 VPE--TSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQ 179 (751)
Q Consensus 102 sp~--s~~~~l~sgs~Dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~ 179 (751)
+.. +..-+||.||.-|-|++||--.- .....+.+-...|..|..+.++.++|+|| ...+.+-|++-
T Consensus 566 ss~~tTesGyIa~as~kGDirLyDRig~----------rAKtalP~lG~aIk~idvta~Gk~ilaTC--k~yllL~d~~i 633 (776)
T COG5167 566 SSGMTTESGYIAAASRKGDIRLYDRIGK----------RAKTALPGLGDAIKHIDVTANGKHILATC--KNYLLLTDVPI 633 (776)
T ss_pred cccccccCceEEEecCCCceeeehhhcc----------hhhhcCcccccceeeeEeecCCcEEEEee--cceEEEEeccc
Confidence 211 11358999999999999997532 23455677788999999998555555554 35788888765
Q ss_pred C
Q 004477 180 G 180 (751)
Q Consensus 180 ~ 180 (751)
.
T Consensus 634 k 634 (776)
T COG5167 634 K 634 (776)
T ss_pred c
Confidence 3
No 457
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=81.16 E-value=68 Score=32.74 Aligned_cols=113 Identities=16% Similarity=0.151 Sum_probs=66.1
Q ss_pred cEEEEEECCCCCEEEEEe---CCCcEEEEeCCCCeEEEEecccCCcceEEEEEecCCCCcEEEEEECCCcEEEEE-CCCC
Q 004477 52 CVNAISWNSKGSLLISGS---DDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFN-LSRF 127 (751)
Q Consensus 52 ~V~~l~~s~dg~~LaSgs---~Dg~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~Dg~V~vwd-~~~~ 127 (751)
.+...+++++|+.+|... ....+.++.. +.....+..+. .+..-.|.++ +...+....+...+++. ...+
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~--~~~~~~~~~g~--~l~~PS~d~~--g~~W~v~~~~~~~~~~~~~~~g 98 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPA--GGPVRPVLTGG--SLTRPSWDPD--GWVWTVDDGSGGVRVVRDSASG 98 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEcC--CCcceeeccCC--ccccccccCC--CCEEEEEcCCCceEEEEecCCC
Confidence 688999999999877665 3334555543 33333332333 6788889998 67777767777777774 2222
Q ss_pred CCCCCCCCCCCCceee-cccCCceeEEEEecCCCCEEEEE--eCCCcEEEEecC
Q 004477 128 SGRGLDDNAITPSALY-QCHTRRVKKLAVEVGNPHVVWSA--SEDGTLRQHDFR 178 (751)
Q Consensus 128 ~~~~~~~~~~~~~~~~-~~h~~~V~~l~~sp~~~~~l~s~--s~Dg~I~iwDlr 178 (751)
.. .++..- ..-...|..+.++|++.++.+.. ..++.|.+--+.
T Consensus 99 ~~--------~~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~ 144 (253)
T PF10647_consen 99 TG--------EPVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVV 144 (253)
T ss_pred cc--------eeEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEE
Confidence 11 111111 11112899999999554443333 335677666544
No 458
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=80.21 E-value=0.36 Score=52.13 Aligned_cols=142 Identities=10% Similarity=0.123 Sum_probs=94.6
Q ss_pred EEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEecccCCcceEEEEEecCCCCcEEEEEECCCcEEEEECCCCCCCCC
Q 004477 53 VNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGL 132 (751)
Q Consensus 53 V~~l~~s~dg~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~Dg~V~vwd~~~~~~~~~ 132 (751)
-....|-+.+.-|+.++.+..|..||-. ++....+ .-++....++|..+. +..++.+-..+.+.+||+.+..
T Consensus 37 pi~~~w~~e~~nlavaca~tiv~~YD~a-gq~~le~--n~tg~aldm~wDkeg-dvlavlAek~~piylwd~n~ey---- 108 (615)
T KOG2247|consen 37 PIIHRWRPEGHNLAVACANTIVIYYDKA-GQVILEL--NPTGKALDMAWDKEG-DVLAVLAEKTGPIYLWDVNSEY---- 108 (615)
T ss_pred cceeeEecCCCceehhhhhhHHHhhhhh-cceeccc--CCchhHhhhhhcccc-chhhhhhhcCCCeeechhhhhh----
Confidence 3355678877779999999999999954 4444333 345667788888763 4556667788999999998632
Q ss_pred CCCCCCCceeec---ccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCCCCCCCCCCccceEEEecccCceeccc
Q 004477 133 DDNAITPSALYQ---CHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLA 209 (751)
Q Consensus 133 ~~~~~~~~~~~~---~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 209 (751)
...+. .|.... +.|++ +...++.+-..|.+++++.++.+.. .
T Consensus 109 -------tqqLE~gg~~s~sl--l~wsK-g~~el~ig~~~gn~viynhgtsR~i-------------------------i 153 (615)
T KOG2247|consen 109 -------TQQLESGGTSSKSL--LAWSK-GTPELVIGNNAGNIVIYNHGTSRRI-------------------------I 153 (615)
T ss_pred -------HHHHhccCcchHHH--Hhhcc-CCccccccccccceEEEeccchhhh-------------------------h
Confidence 22221 122222 67888 5566777888899999998876533 1
Q ss_pred CCCCCccceEEEEEeCCCCcEEEEEeCCCe
Q 004477 210 DPPKQTLSLKSCDISSTRPHLLLVGGSDAF 239 (751)
Q Consensus 210 ~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~ 239 (751)
...+|...++++++.+. .+.+.++.|..
T Consensus 154 v~Gkh~RRgtq~av~lE--d~vil~dcd~~ 181 (615)
T KOG2247|consen 154 VMGKHQRRGTQIAVTLE--DYVILCDCDNT 181 (615)
T ss_pred hhcccccceeEEEeccc--ceeeecCcHHH
Confidence 22236667888888884 45666655543
No 459
>PRK12370 invasion protein regulator; Provisional
Probab=80.06 E-value=6.6 Score=45.37 Aligned_cols=87 Identities=15% Similarity=0.034 Sum_probs=65.8
Q ss_pred hhHHHHHhHHHHhcccCCCCCchhhhhHhHHHHHhhcccccchhhhHHHhhHHHhcCCCCCcchHHHHHHHHHHhcchHH
Q 004477 380 PYYGIEACNEVLEGHLSGIGPMLRHECLCIRAALLLKRKWKNDAQMAIRDCYNARRIDSSSFRAHLYMSEALEQLCKYKE 459 (751)
Q Consensus 380 ~~~ai~~~~~~i~~~~~~~~~~~~~~~~~~ra~~~~~r~w~~d~y~al~d~~~a~~~~~~~~~a~~~~~~~l~~l~~~~~ 459 (751)
+..|+..+..++...++. ...+...+.++... |+.-.|+.-..+|+.++|++..+|+.++.++...|++.+
T Consensus 320 ~~~A~~~~~~Al~ldP~~------~~a~~~lg~~~~~~---g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~e 390 (553)
T PRK12370 320 MIKAKEHAIKATELDHNN------PQALGLLGLINTIH---SEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEE 390 (553)
T ss_pred HHHHHHHHHHHHhcCCCC------HHHHHHHHHHHHHc---cCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHH
Confidence 445666667777655443 22344455554433 345568888899999999999999999999999999999
Q ss_pred HHHHHHHhcccCCCCh
Q 004477 460 ALDFAIAAQCLDPSNS 475 (751)
Q Consensus 460 a~~~~~~~~~~~p~~~ 475 (751)
|+.+++......|.+.
T Consensus 391 Ai~~~~~Al~l~P~~~ 406 (553)
T PRK12370 391 ALQTINECLKLDPTRA 406 (553)
T ss_pred HHHHHHHHHhcCCCCh
Confidence 9999999999989754
No 460
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=80.02 E-value=12 Score=45.20 Aligned_cols=97 Identities=9% Similarity=0.042 Sum_probs=81.6
Q ss_pred HHHhhhcCCChhHHHHHhHHHHhcccCCCCCchhhhhHhHHHHHhhcccccchhhhHHHhhHHHhcCCCCCcchHHHHHH
Q 004477 370 ARNSLEEGKHPYYGIEACNEVLEGHLSGIGPMLRHECLCIRAALLLKRKWKNDAQMAIRDCYNARRIDSSSFRAHLYMSE 449 (751)
Q Consensus 370 ~~~~~~~g~~~~~ai~~~~~~i~~~~~~~~~~~~~~~~~~ra~~~~~r~w~~d~y~al~d~~~a~~~~~~~~~a~~~~~~ 449 (751)
+.-....|. +..|+..+.+++...+.. ..++...|..+..++| .-.|+....+++.++|.+...++.++.
T Consensus 366 a~~l~~~g~-~~eA~~~l~~al~~~P~n------~~l~~~lA~l~~~~g~---~~~A~~~l~~al~l~Pd~~~l~~~~a~ 435 (765)
T PRK10049 366 SQVAKYSND-LPQAEMRARELAYNAPGN------QGLRIDYASVLQARGW---PRAAENELKKAEVLEPRNINLEVEQAW 435 (765)
T ss_pred HHHHHHcCC-HHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHhcCC---HHHHHHHHHHHHhhCCCChHHHHHHHH
Confidence 334444555 788999999999877665 3477888898888888 466888889999999999999999999
Q ss_pred HHHHhcchHHHHHHHHHhcccCCCChh
Q 004477 450 ALEQLCKYKEALDFAIAAQCLDPSNSV 476 (751)
Q Consensus 450 ~l~~l~~~~~a~~~~~~~~~~~p~~~~ 476 (751)
.+..++++.+|...+.++...+|+...
T Consensus 436 ~al~~~~~~~A~~~~~~ll~~~Pd~~~ 462 (765)
T PRK10049 436 TALDLQEWRQMDVLTDDVVAREPQDPG 462 (765)
T ss_pred HHHHhCCHHHHHHHHHHHHHhCCCCHH
Confidence 999999999999999999999998763
No 461
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=79.86 E-value=3.6 Score=33.83 Aligned_cols=79 Identities=20% Similarity=0.147 Sum_probs=50.7
Q ss_pred hhHHHHHhHHHHhcccCCCCCchhhhhHhHHHHHhhcccccchhhhHHHhhHHHhcCCCCCcchHHHHHHHHHHhcchHH
Q 004477 380 PYYGIEACNEVLEGHLSGIGPMLRHECLCIRAALLLKRKWKNDAQMAIRDCYNARRIDSSSFRAHLYMSEALEQLCKYKE 459 (751)
Q Consensus 380 ~~~ai~~~~~~i~~~~~~~~~~~~~~~~~~ra~~~~~r~w~~d~y~al~d~~~a~~~~~~~~~a~~~~~~~l~~l~~~~~ 459 (751)
|..|+..+..++...+... ....+.+.|..+...+- -..|+.-+.+ ..+++.++..++-+++|++.++++.+
T Consensus 5 y~~Ai~~~~k~~~~~~~~~----~~~~~~~la~~~~~~~~---y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~e 76 (84)
T PF12895_consen 5 YENAIKYYEKLLELDPTNP----NSAYLYNLAQCYFQQGK---YEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEE 76 (84)
T ss_dssp HHHHHHHHHHHHHHHCGTH----HHHHHHHHHHHHHHTTH---HHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHH
T ss_pred HHHHHHHHHHHHHHCCCCh----hHHHHHHHHHHHHHCCC---HHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHH
Confidence 6677888888887665320 11223334555544332 2234444444 66777788899999999999999999
Q ss_pred HHHHHHH
Q 004477 460 ALDFAIA 466 (751)
Q Consensus 460 a~~~~~~ 466 (751)
|+.++++
T Consensus 77 Ai~~l~~ 83 (84)
T PF12895_consen 77 AIKALEK 83 (84)
T ss_dssp HHHHHHH
T ss_pred HHHHHhc
Confidence 9988753
No 462
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=79.41 E-value=67 Score=35.82 Aligned_cols=59 Identities=10% Similarity=0.183 Sum_probs=41.2
Q ss_pred eccCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCeE--EEEec---c-cCCcceEEEEEecC
Q 004477 46 LEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKL--LHSIE---T-GHSANVFCTKFVPE 104 (751)
Q Consensus 46 L~gH~~~V~~l~~s~dg~~LaSgs~Dg~I~IWd~~~~~~--~~~l~---~-~h~~~V~~v~fsp~ 104 (751)
+...-...+.|+|.|||++|++--..|.|++++..++.. +..+. . .-.+....|+|+|+
T Consensus 25 va~GL~~Pw~maflPDG~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~Pd 89 (454)
T TIGR03606 25 LLSGLNKPWALLWGPDNQLWVTERATGKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHPD 89 (454)
T ss_pred EECCCCCceEEEEcCCCeEEEEEecCCEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECCC
Confidence 333445778999999999888776679999998655432 22221 1 13577899999987
No 463
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=79.16 E-value=60 Score=37.17 Aligned_cols=65 Identities=14% Similarity=0.157 Sum_probs=38.0
Q ss_pred CEEEEEeCCCcEEEEeCCCCeEEEEecccCCcceEEEEEecCCCCcEEEEEE------CCCcEEEEECCCC
Q 004477 63 SLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGA------GDAEVRLFNLSRF 127 (751)
Q Consensus 63 ~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs------~Dg~V~vwd~~~~ 127 (751)
..++.++.|+.|.-.|..+|+.+..........-..+.-+|--.+..|+.+. .+|.|.-+|..++
T Consensus 121 ~~v~v~t~dg~l~ALDa~TGk~~W~~~~~~~~~~~~~tssP~v~~g~Vivg~~~~~~~~~G~v~AlD~~TG 191 (527)
T TIGR03075 121 GKVFFGTLDARLVALDAKTGKVVWSKKNGDYKAGYTITAAPLVVKGKVITGISGGEFGVRGYVTAYDAKTG 191 (527)
T ss_pred CEEEEEcCCCEEEEEECCCCCEEeecccccccccccccCCcEEECCEEEEeecccccCCCcEEEEEECCCC
Confidence 4567788899999999999999877632211110111112210023444443 2688988888865
No 464
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=78.68 E-value=81 Score=34.20 Aligned_cols=74 Identities=19% Similarity=0.126 Sum_probs=40.6
Q ss_pred cceEEEEEecCCCCcEEEEEE-----------CCC-cEEEEECCCCCCCCCCCCCCCCceeecccCCceeEEEEecCCCC
Q 004477 94 ANVFCTKFVPETSDELVVSGA-----------GDA-EVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPH 161 (751)
Q Consensus 94 ~~V~~v~fsp~s~~~~l~sgs-----------~Dg-~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~ 161 (751)
.....++|.++ |+++++-. ..+ .|.+++-....++. .....+...-.....|++.+ ++
T Consensus 14 ~~P~~ia~d~~--G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~------d~~~vfa~~l~~p~Gi~~~~-~G- 83 (367)
T TIGR02604 14 RNPIAVCFDER--GRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKY------DKSNVFAEELSMVTGLAVAV-GG- 83 (367)
T ss_pred CCCceeeECCC--CCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCc------ceeEEeecCCCCccceeEec-CC-
Confidence 45667888888 77776643 123 67666655444432 22334443344568899988 55
Q ss_pred EEEEEeCCCcEEEEecC
Q 004477 162 VVWSASEDGTLRQHDFR 178 (751)
Q Consensus 162 ~l~s~s~Dg~I~iwDlr 178 (751)
++++ ......++.|..
T Consensus 84 lyV~-~~~~i~~~~d~~ 99 (367)
T TIGR02604 84 VYVA-TPPDILFLRDKD 99 (367)
T ss_pred EEEe-CCCeEEEEeCCC
Confidence 6654 343333343543
No 465
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=78.24 E-value=77 Score=31.62 Aligned_cols=48 Identities=13% Similarity=0.059 Sum_probs=35.3
Q ss_pred EEEcCCCCEEEEEeCCCcEEEEECCCCCcceeeeecCCCceeEEeCCC
Q 004477 285 VTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVGDASKIMSFTPT 332 (751)
Q Consensus 285 v~fspdg~~Ll~~s~d~~I~lwdl~~~~~~~~~~~~~~~~~~~~~sp~ 332 (751)
++..-+|+..++....++|..+|..+++...........+...||...
T Consensus 217 m~ID~eG~L~Va~~ng~~V~~~dp~tGK~L~eiklPt~qitsccFgGk 264 (310)
T KOG4499|consen 217 MTIDTEGNLYVATFNGGTVQKVDPTTGKILLEIKLPTPQITSCCFGGK 264 (310)
T ss_pred ceEccCCcEEEEEecCcEEEEECCCCCcEEEEEEcCCCceEEEEecCC
Confidence 445668888888888999999999998766555555566666777543
No 466
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=78.05 E-value=8.9 Score=39.45 Aligned_cols=96 Identities=7% Similarity=-0.051 Sum_probs=65.4
Q ss_pred HHHHHHh-hhcCCChhHHHHHhHHHHhcccCCCCCchhhhhHhHHHHHhhcccccchhhhHHHh-------hHHHhcCCC
Q 004477 367 VEIARNS-LEEGKHPYYGIEACNEVLEGHLSGIGPMLRHECLCIRAALLLKRKWKNDAQMAIRD-------CYNARRIDS 438 (751)
Q Consensus 367 ~~~~~~~-~~~g~~~~~ai~~~~~~i~~~~~~~~~~~~~~~~~~ra~~~~~r~w~~d~y~al~d-------~~~a~~~~~ 438 (751)
-..+... +..+. |..++..+...+..++++..-. ..+ -|-|..|...++ ..+.+...|
T Consensus 146 Y~~A~~l~~~~~~-y~~Ai~af~~fl~~yP~s~~a~---~A~----------y~LG~~y~~~g~~~~A~~~f~~vv~~yP 211 (263)
T PRK10803 146 YNAAIALVQDKSR-QDDAIVAFQNFVKKYPDSTYQP---NAN----------YWLGQLNYNKGKKDDAAYYFASVVKNYP 211 (263)
T ss_pred HHHHHHHHHhcCC-HHHHHHHHHHHHHHCcCCcchH---HHH----------HHHHHHHHHcCCHHHHHHHHHHHHHHCC
Confidence 3344444 33455 8899999999999998863211 111 244444444443 444455556
Q ss_pred C---CcchHHHHHHHHHHhcchHHHHHHHHHhcccCCCChh
Q 004477 439 S---SFRAHLYMSEALEQLCKYKEALDFAIAAQCLDPSNSV 476 (751)
Q Consensus 439 ~---~~~a~~~~~~~l~~l~~~~~a~~~~~~~~~~~p~~~~ 476 (751)
. ...+.++++.++..++...+|...++.+...+|....
T Consensus 212 ~s~~~~dAl~klg~~~~~~g~~~~A~~~~~~vi~~yP~s~~ 252 (263)
T PRK10803 212 KSPKAADAMFKVGVIMQDKGDTAKAKAVYQQVIKKYPGTDG 252 (263)
T ss_pred CCcchhHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHH
Confidence 5 4558888899999999999999999999999997543
No 467
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=77.33 E-value=5.4 Score=43.64 Aligned_cols=62 Identities=13% Similarity=-0.070 Sum_probs=51.7
Q ss_pred hHhHHHHHhhcccccchhhhHHHhhHHHhcCCCCCcch---HHHHHHHHHHhcchHHHHHHHHHhccc
Q 004477 406 CLCIRAALLLKRKWKNDAQMAIRDCYNARRIDSSSFRA---HLYMSEALEQLCKYKEALDFAIAAQCL 470 (751)
Q Consensus 406 ~~~~ra~~~~~r~w~~d~y~al~d~~~a~~~~~~~~~a---~~~~~~~l~~l~~~~~a~~~~~~~~~~ 470 (751)
.+.|.+.++.+. |+.-.|+..+.+|+.++|++..+ |+.++-|+..+|++.+|+.+++.....
T Consensus 77 a~~NLG~AL~~l---GryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 77 DAVNLGLSLFSK---GRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred HHHHHHHHHHHc---CCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 456677777665 44567889999999999999965 999999999999999999999887664
No 468
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=77.28 E-value=48 Score=35.96 Aligned_cols=109 Identities=11% Similarity=0.080 Sum_probs=58.2
Q ss_pred CcEEEEEECCCCCEEEEEe-----------CCC-cEEEEeCCC--Ce--EEEEecccCCcceEEEEEecCCCCcEEEEEE
Q 004477 51 GCVNAISWNSKGSLLISGS-----------DDT-HINVWSYSS--RK--LLHSIETGHSANVFCTKFVPETSDELVVSGA 114 (751)
Q Consensus 51 ~~V~~l~~s~dg~~LaSgs-----------~Dg-~I~IWd~~~--~~--~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs 114 (751)
.....|+|.++|+++++-. ..+ .|.+++-.+ |+ ....+ .........++|.++ + ++++ +
T Consensus 14 ~~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vf-a~~l~~p~Gi~~~~~--G-lyV~-~ 88 (367)
T TIGR02604 14 RNPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVF-AEELSMVTGLAVAVG--G-VYVA-T 88 (367)
T ss_pred CCCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEe-ecCCCCccceeEecC--C-EEEe-C
Confidence 3556899999999887753 223 677776432 33 22333 223345688999887 6 5554 4
Q ss_pred CCCcEEEEECCCCCCCCCCCCCCCC-ceeecc----cCCceeEEEEecCCCCEEEEEeC
Q 004477 115 GDAEVRLFNLSRFSGRGLDDNAITP-SALYQC----HTRRVKKLAVEVGNPHVVWSASE 168 (751)
Q Consensus 115 ~Dg~V~vwd~~~~~~~~~~~~~~~~-~~~~~~----h~~~V~~l~~sp~~~~~l~s~s~ 168 (751)
.....++.|... .++. +...+. +..+.. +......++|.| ++.+.++-+.
T Consensus 89 ~~~i~~~~d~~g-dg~a--d~~~~~l~~~~~~~~~~~~~~~~~l~~gp-DG~LYv~~G~ 143 (367)
T TIGR02604 89 PPDILFLRDKDG-DDKA--DGEREVLLSGFGGQINNHHHSLNSLAWGP-DGWLYFNHGN 143 (367)
T ss_pred CCeEEEEeCCCC-CCCC--CCccEEEEEccCCCCCcccccccCceECC-CCCEEEeccc
Confidence 443333444432 1111 000011 112221 234477899999 5677666553
No 469
>PRK12370 invasion protein regulator; Provisional
Probab=77.19 E-value=18 Score=41.79 Aligned_cols=93 Identities=6% Similarity=-0.083 Sum_probs=68.1
Q ss_pred HHHHhhhcCCChhHHHHHhHHHHhcccCCCCCchhhhhHhHHHHHhhcccccchhhhHHHhhHHHhcCCCCCcchHHHHH
Q 004477 369 IARNSLEEGKHPYYGIEACNEVLEGHLSGIGPMLRHECLCIRAALLLKRKWKNDAQMAIRDCYNARRIDSSSFRAHLYMS 448 (751)
Q Consensus 369 ~~~~~~~~g~~~~~ai~~~~~~i~~~~~~~~~~~~~~~~~~ra~~~~~r~w~~d~y~al~d~~~a~~~~~~~~~a~~~~~ 448 (751)
.+.-....|+ +..|+..|.+++...++. ...+...+.++... |+.-.|+....++++++|.++.+++.++
T Consensus 344 lg~~~~~~g~-~~~A~~~~~~Al~l~P~~------~~a~~~lg~~l~~~---G~~~eAi~~~~~Al~l~P~~~~~~~~~~ 413 (553)
T PRK12370 344 LGLINTIHSE-YIVGSLLFKQANLLSPIS------ADIKYYYGWNLFMA---GQLEEALQTINECLKLDPTRAAAGITKL 413 (553)
T ss_pred HHHHHHHccC-HHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHC---CCHHHHHHHHHHHHhcCCCChhhHHHHH
Confidence 3334444555 778888999998877665 23444555555443 5566788899999999999988887777
Q ss_pred HHHHHhcchHHHHHHHHHhcccC
Q 004477 449 EALEQLCKYKEALDFAIAAQCLD 471 (751)
Q Consensus 449 ~~l~~l~~~~~a~~~~~~~~~~~ 471 (751)
..+...+++.+|..++.+.....
T Consensus 414 ~~~~~~g~~eeA~~~~~~~l~~~ 436 (553)
T PRK12370 414 WITYYHTGIDDAIRLGDELRSQH 436 (553)
T ss_pred HHHHhccCHHHHHHHHHHHHHhc
Confidence 78888999999998888776554
No 470
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=77.04 E-value=1.5e+02 Score=34.57 Aligned_cols=51 Identities=20% Similarity=0.290 Sum_probs=38.2
Q ss_pred CCcEEEEeCCCCeEEEEecccCCcceEEEEEecCCCCcEEEEEECCCcEEEEECCC
Q 004477 71 DTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSR 126 (751)
Q Consensus 71 Dg~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~Dg~V~vwd~~~ 126 (751)
--.|+|+++. |+.+..+.-.| +.+-.+.|+.+ ..|+.-..||+|+||++-.
T Consensus 63 ~~~I~If~~s-G~lL~~~~w~~-~~lI~mgWs~~---eeLI~v~k~g~v~Vy~~~g 113 (829)
T KOG2280|consen 63 RPYIRIFNIS-GQLLGRILWKH-GELIGMGWSDD---EELICVQKDGTVHVYGLLG 113 (829)
T ss_pred ceeEEEEecc-ccchHHHHhcC-CCeeeecccCC---ceEEEEeccceEEEeecch
Confidence 3458888864 77776663334 47888999977 5677778999999999873
No 471
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=76.87 E-value=1e+02 Score=32.44 Aligned_cols=167 Identities=10% Similarity=0.074 Sum_probs=85.8
Q ss_pred EEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEe---cccCC-cceEEEEEecCCCCcEEEEEEC-----C----CcE
Q 004477 53 VNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSI---ETGHS-ANVFCTKFVPETSDELVVSGAG-----D----AEV 119 (751)
Q Consensus 53 V~~l~~s~dg~~LaSgs~Dg~I~IWd~~~~~~~~~l---~~~h~-~~V~~v~fsp~s~~~~l~sgs~-----D----g~V 119 (751)
+.++..-..+..|+++.. -+.+++.+++..+..+ ..+.. ...+.+...|+ |.+.++... . ..-
T Consensus 68 ~~~~~~~d~~g~Lv~~~~--g~~~~~~~~~~~~t~~~~~~~~~~~~r~ND~~v~pd--G~~wfgt~~~~~~~~~~~~~~G 143 (307)
T COG3386 68 FSSGALIDAGGRLIACEH--GVRLLDPDTGGKITLLAEPEDGLPLNRPNDGVVDPD--GRIWFGDMGYFDLGKSEERPTG 143 (307)
T ss_pred cccceeecCCCeEEEEcc--ccEEEeccCCceeEEeccccCCCCcCCCCceeEcCC--CCEEEeCCCccccCccccCCcc
Confidence 344444334445555533 4667777655553222 11222 44567888888 677665443 0 111
Q ss_pred EEEECCCCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCCCCCCCCCCccceEEEe
Q 004477 120 RLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLD 199 (751)
Q Consensus 120 ~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~~~~~~~~~~~~l~~ 199 (751)
.||-+... + ..+..+..|-..-+.|+|||++..++++=+..+.|.-|++..... ..........
T Consensus 144 ~lyr~~p~-g--------~~~~l~~~~~~~~NGla~SpDg~tly~aDT~~~~i~r~~~d~~~g-------~~~~~~~~~~ 207 (307)
T COG3386 144 SLYRVDPD-G--------GVVRLLDDDLTIPNGLAFSPDGKTLYVADTPANRIHRYDLDPATG-------PIGGRRGFVD 207 (307)
T ss_pred eEEEEcCC-C--------CEEEeecCcEEecCceEECCCCCEEEEEeCCCCeEEEEecCcccC-------ccCCcceEEE
Confidence 34444311 1 224445555556688999996656666666778888888764110 0000011111
Q ss_pred cccCceecccCCCCCccceEEEEEeCCCCcEEEEEeCCC-eEEEEeCCCCCCcc
Q 004477 200 LRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDA-FARLYDRRMLPPLT 252 (751)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~-~IriwD~~~~~~~~ 252 (751)
.. ......-.+++.. ++++.+++..++ .|.+|+.. ++.+.
T Consensus 208 ~~-----------~~~G~PDG~~vDa-dG~lw~~a~~~g~~v~~~~pd-G~l~~ 248 (307)
T COG3386 208 FD-----------EEPGLPDGMAVDA-DGNLWVAAVWGGGRVVRFNPD-GKLLG 248 (307)
T ss_pred cc-----------CCCCCCCceEEeC-CCCEEEecccCCceEEEECCC-CcEEE
Confidence 10 0122333455666 355554444444 89999987 55443
No 472
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=76.84 E-value=58 Score=29.51 Aligned_cols=113 Identities=7% Similarity=0.134 Sum_probs=69.3
Q ss_pred EEEEECCCCCEEEEEeCCCcEEEEeCCCCe--------EEEEecccCCcceEEEEEec---CCCCcEEEEEECCCcEEEE
Q 004477 54 NAISWNSKGSLLISGSDDTHINVWSYSSRK--------LLHSIETGHSANVFCTKFVP---ETSDELVVSGAGDAEVRLF 122 (751)
Q Consensus 54 ~~l~~s~dg~~LaSgs~Dg~I~IWd~~~~~--------~~~~l~~~h~~~V~~v~fsp---~s~~~~l~sgs~Dg~V~vw 122 (751)
..-+|......|+.++.-|+|.|+++.... .+..+ .-...|.+++--| +...+.|+.|+ ...+..|
T Consensus 2 aiGkfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~L--Nin~~italaaG~l~~~~~~D~LliGt-~t~llaY 78 (136)
T PF14781_consen 2 AIGKFDGVHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFL--NINQEITALAAGRLKPDDGRDCLLIGT-QTSLLAY 78 (136)
T ss_pred eEEEeCCCceeEEEEecCCEEEEECCCccccccccccCceeEE--ECCCceEEEEEEecCCCCCcCEEEEec-cceEEEE
Confidence 344666666789999999999999876432 22333 2356677776444 43346677765 4789999
Q ss_pred ECCCCCCCCCCCCCCCCceeecccCCceeEEEEec--CCCCEEEEEeCCCcEEEEecCCC
Q 004477 123 NLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEV--GNPHVVWSASEDGTLRQHDFRQG 180 (751)
Q Consensus 123 d~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp--~~~~~l~s~s~Dg~I~iwDlr~~ 180 (751)
|+.... -..++.-.+.|+++.+-. +...-++..+....|.-||....
T Consensus 79 DV~~N~-----------d~Fyke~~DGvn~i~~g~~~~~~~~l~ivGGncsi~Gfd~~G~ 127 (136)
T PF14781_consen 79 DVENNS-----------DLFYKEVPDGVNAIVIGKLGDIPSPLVIVGGNCSIQGFDYEGN 127 (136)
T ss_pred EcccCc-----------hhhhhhCccceeEEEEEecCCCCCcEEEECceEEEEEeCCCCc
Confidence 998642 222333456777777632 11223444455578888886543
No 473
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=76.08 E-value=28 Score=42.94 Aligned_cols=88 Identities=8% Similarity=-0.098 Sum_probs=60.3
Q ss_pred hhHHHHHhHHHHhcccCCCCCchhhhhHhHHHHHhhcccccchhhhHHHhhHHHhcCCCCCcchHHHHHHHHHHhcchHH
Q 004477 380 PYYGIEACNEVLEGHLSGIGPMLRHECLCIRAALLLKRKWKNDAQMAIRDCYNARRIDSSSFRAHLYMSEALEQLCKYKE 459 (751)
Q Consensus 380 ~~~ai~~~~~~i~~~~~~~~~~~~~~~~~~ra~~~~~r~w~~d~y~al~d~~~a~~~~~~~~~a~~~~~~~l~~l~~~~~ 459 (751)
+..|+..+..++...++. ...+.+.+.++... |+.-.|+.-...|+.++|.++.+++.++.++..+|++.+
T Consensus 625 ~deA~~~l~~AL~l~Pd~------~~a~~nLG~aL~~~---G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~e 695 (987)
T PRK09782 625 VPAAVSDLRAALELEPNN------SNYQAALGYALWDS---GDIAQSREMLERAHKGLPDDPALIRQLAYVNQRLDDMAA 695 (987)
T ss_pred HHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHC---CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHH
Confidence 555666666666655443 22344555555543 334556666777888888888888888888888888888
Q ss_pred HHHHHHHhcccCCCChh
Q 004477 460 ALDFAIAAQCLDPSNSV 476 (751)
Q Consensus 460 a~~~~~~~~~~~p~~~~ 476 (751)
|..+++......|..+.
T Consensus 696 A~~~l~~Al~l~P~~a~ 712 (987)
T PRK09782 696 TQHYARLVIDDIDNQAL 712 (987)
T ss_pred HHHHHHHHHhcCCCCch
Confidence 88888888777776543
No 474
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=75.55 E-value=41 Score=33.54 Aligned_cols=109 Identities=15% Similarity=-0.023 Sum_probs=80.3
Q ss_pred chhHHHHHHHHHhhhcCCChhHHHHHhHHHHhcccCCCCCchhhhhHhHHHHHhhcccccchhhhHHHhhHHHhcCCCCC
Q 004477 361 GKCRMLVEIARNSLEEGKHPYYGIEACNEVLEGHLSGIGPMLRHECLCIRAALLLKRKWKNDAQMAIRDCYNARRIDSSS 440 (751)
Q Consensus 361 ~~~~~l~~~~~~~~~~g~~~~~ai~~~~~~i~~~~~~~~~~~~~~~~~~ra~~~~~r~w~~d~y~al~d~~~a~~~~~~~ 440 (751)
.....+...+...+..++ |..++..+..++..++.+.. ....+...+.++... ++.-.|+.-..++++..|++
T Consensus 31 ~~~~~~~~~g~~~~~~~~-~~~A~~~~~~~~~~~p~~~~---~~~a~~~la~~~~~~---~~~~~A~~~~~~~l~~~p~~ 103 (235)
T TIGR03302 31 WPAEELYEEAKEALDSGD-YTEAIKYFEALESRYPFSPY---AEQAQLDLAYAYYKS---GDYAEAIAAADRFIRLHPNH 103 (235)
T ss_pred CCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHhCCCchh---HHHHHHHHHHHHHhc---CCHHHHHHHHHHHHHHCcCC
Confidence 334556677777777888 88999999999988765521 112334445555544 34566888888899999998
Q ss_pred cc---hHHHHHHHHHHh--------cchHHHHHHHHHhcccCCCChh
Q 004477 441 FR---AHLYMSEALEQL--------CKYKEALDFAIAAQCLDPSNSV 476 (751)
Q Consensus 441 ~~---a~~~~~~~l~~l--------~~~~~a~~~~~~~~~~~p~~~~ 476 (751)
.. +++.+..++... +.+.+|...+..+...+|....
T Consensus 104 ~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~ 150 (235)
T TIGR03302 104 PDADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEY 150 (235)
T ss_pred CchHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChh
Confidence 88 688888888876 7788999999999999997653
No 475
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=74.92 E-value=18 Score=37.87 Aligned_cols=121 Identities=22% Similarity=0.175 Sum_probs=83.3
Q ss_pred hhHHHHHHHHHhhhcCCChhHHHHHhHHHHhcccCCCCCchhhhhHhHHHHHhhcccccchhhhHHHhhHHHhcCCCCCc
Q 004477 362 KCRMLVEIARNSLEEGKHPYYGIEACNEVLEGHLSGIGPMLRHECLCIRAALLLKRKWKNDAQMAIRDCYNARRIDSSSF 441 (751)
Q Consensus 362 ~~~~l~~~~~~~~~~g~~~~~ai~~~~~~i~~~~~~~~~~~~~~~~~~ra~~~~~r~w~~d~y~al~d~~~a~~~~~~~~ 441 (751)
++......+....+.+. |+..+..+..++..-+..+ .++-..|..-...+.. ++..-.|++.|..++.++|.++
T Consensus 268 Kv~K~les~e~~ie~~~-~t~cle~ge~vlk~ep~~~--~ir~~~~r~~c~C~~~---d~~~~eAiqqC~evL~~d~~dv 341 (504)
T KOG0624|consen 268 KVVKSLESAEQAIEEKH-WTECLEAGEKVLKNEPEET--MIRYNGFRVLCTCYRE---DEQFGEAIQQCKEVLDIDPDDV 341 (504)
T ss_pred HHHHHHHHHHHHHhhhh-HHHHHHHHHHHHhcCCccc--ceeeeeeheeeecccc---cCCHHHHHHHHHHHHhcCchHH
Confidence 44444555666666666 9999999999888665531 1111111111111111 3335678999999999999999
Q ss_pred chHHHHHHHHHHhcchHHHHHHHHHhcccCCCChhhhHHHHHHHHHH
Q 004477 442 RAHLYMSEALEQLCKYKEALDFAIAAQCLDPSNSVMAEKVENIKKHI 488 (751)
Q Consensus 442 ~a~~~~~~~l~~l~~~~~a~~~~~~~~~~~p~~~~~~~~~~~~~~~~ 488 (751)
.+.-..+.|++.-.-|.+|+.-.+.....-+++....+++...++..
T Consensus 342 ~~l~dRAeA~l~dE~YD~AI~dye~A~e~n~sn~~~reGle~Akrlk 388 (504)
T KOG0624|consen 342 QVLCDRAEAYLGDEMYDDAIHDYEKALELNESNTRAREGLERAKRLK 388 (504)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHH
Confidence 99999999999999999999888877777777776666665554443
No 476
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=74.80 E-value=92 Score=31.88 Aligned_cols=135 Identities=10% Similarity=0.109 Sum_probs=70.7
Q ss_pred eCCCcEEEEeCCCCeEEEEecccCCcceEEEEEecCCCCcEEEEEECCCcEEEEECCCCCCCCCCCCCCCCceeec--cc
Q 004477 69 SDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQ--CH 146 (751)
Q Consensus 69 s~Dg~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~Dg~V~vwd~~~~~~~~~~~~~~~~~~~~~--~h 146 (751)
=.++...+||..+.+.+.++. ..+.=+.++ .+ ++.|+.......+..+|..+... ...+. ..
T Consensus 107 Wk~~~~f~yd~~tl~~~~~~~--y~~EGWGLt--~d--g~~Li~SDGS~~L~~~dP~~f~~----------~~~i~V~~~ 170 (264)
T PF05096_consen 107 WKEGTGFVYDPNTLKKIGTFP--YPGEGWGLT--SD--GKRLIMSDGSSRLYFLDPETFKE----------VRTIQVTDN 170 (264)
T ss_dssp SSSSEEEEEETTTTEEEEEEE---SSS--EEE--EC--SSCEEEE-SSSEEEEE-TTT-SE----------EEEEE-EET
T ss_pred ecCCeEEEEccccceEEEEEe--cCCcceEEE--cC--CCEEEEECCccceEEECCcccce----------EEEEEEEEC
Confidence 357889999999988888873 234445665 33 56677666778899999876422 22221 11
Q ss_pred C---CceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCCCCCCCCCCccceEEEecccCceeccc---CCCCCccceEE
Q 004477 147 T---RRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLA---DPPKQTLSLKS 220 (751)
Q Consensus 147 ~---~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~---~~~~~~~~v~~ 220 (751)
. ..++.+.|. ++.+.|=.=....|...|..++... -.+++..=.. ... .......-.+.
T Consensus 171 g~pv~~LNELE~i--~G~IyANVW~td~I~~Idp~tG~V~------------~~iDls~L~~-~~~~~~~~~~~~dVLNG 235 (264)
T PF05096_consen 171 GRPVSNLNELEYI--NGKIYANVWQTDRIVRIDPETGKVV------------GWIDLSGLRP-EVGRDKSRQPDDDVLNG 235 (264)
T ss_dssp TEE---EEEEEEE--TTEEEEEETTSSEEEEEETTT-BEE------------EEEE-HHHHH-HHTSTTST--TTS-EEE
T ss_pred CEECCCcEeEEEE--cCEEEEEeCCCCeEEEEeCCCCeEE------------EEEEhhHhhh-cccccccccccCCeeEe
Confidence 2 234556665 4455544444455666676666521 1222211000 000 00112456899
Q ss_pred EEEeCCCCcEEEEE
Q 004477 221 CDISSTRPHLLLVG 234 (751)
Q Consensus 221 i~~sp~~~~~l~sg 234 (751)
|++.|...++++||
T Consensus 236 IAyd~~~~~l~vTG 249 (264)
T PF05096_consen 236 IAYDPETDRLFVTG 249 (264)
T ss_dssp EEEETTTTEEEEEE
T ss_pred EeEeCCCCEEEEEe
Confidence 99999877777776
No 477
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=74.26 E-value=2.1e+02 Score=34.64 Aligned_cols=154 Identities=10% Similarity=0.110 Sum_probs=95.9
Q ss_pred EEEEEECCC-CCEEEEEe----------CCCcEEEEeCCCCeEEEEe-cccCCcceEEEEEecCCCCcEEEEEECCCcEE
Q 004477 53 VNAISWNSK-GSLLISGS----------DDTHINVWSYSSRKLLHSI-ETGHSANVFCTKFVPETSDELVVSGAGDAEVR 120 (751)
Q Consensus 53 V~~l~~s~d-g~~LaSgs----------~Dg~I~IWd~~~~~~~~~l-~~~h~~~V~~v~fsp~s~~~~l~sgs~Dg~V~ 120 (751)
|.++.|..| +++++.|. ..|.|.|+.+..+..+..+ .+.-.+.|.++.--. |++|| +-...|+
T Consensus 777 i~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~L~~v~e~~v~Gav~aL~~fn---gkllA--~In~~vr 851 (1096)
T KOG1897|consen 777 IISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEELNSLELVAETVVKGAVYALVEFN---GKLLA--GINQSVR 851 (1096)
T ss_pred eeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEecCCceeeeeeeeeccceeehhhhC---CeEEE--ecCcEEE
Confidence 455568877 77888885 3577888887764333333 112245555554332 45555 4568999
Q ss_pred EEECCCCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCCCCCCCCCCccceEEEec
Q 004477 121 LFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDL 200 (751)
Q Consensus 121 vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~~~~~~~~~~~~l~~~ 200 (751)
+|++.+. +.++.-..|..++..+...- .+..++.|.--++|.+.-.+..+. .+...
T Consensus 852 Lye~t~~----------~eLr~e~~~~~~~~aL~l~v-~gdeI~VgDlm~Sitll~y~~~eg-------------~f~ev 907 (1096)
T KOG1897|consen 852 LYEWTTE----------RELRIECNISNPIIALDLQV-KGDEIAVGDLMRSITLLQYKGDEG-------------NFEEV 907 (1096)
T ss_pred EEEcccc----------ceehhhhcccCCeEEEEEEe-cCcEEEEeeccceEEEEEEeccCC-------------ceEEe
Confidence 9999864 23555556788888888876 678888998888877665554331 01110
Q ss_pred ccCceecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCC
Q 004477 201 RCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRR 246 (751)
Q Consensus 201 ~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~ 246 (751)
. ..-+..+++++.+-. ...++.+..+|.+.+-...
T Consensus 908 A---------rD~~p~Wmtaveil~--~d~ylgae~~gNlf~v~~d 942 (1096)
T KOG1897|consen 908 A---------RDYNPNWMTAVEILD--DDTYLGAENSGNLFTVRKD 942 (1096)
T ss_pred e---------hhhCccceeeEEEec--CceEEeecccccEEEEEec
Confidence 0 111455777777765 3566777778877776554
No 478
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=74.11 E-value=3.7 Score=26.95 Aligned_cols=32 Identities=38% Similarity=0.456 Sum_probs=26.0
Q ss_pred chHHHHHHHHHHhcchHHHHHHHHHhcccCCC
Q 004477 442 RAHLYMSEALEQLCKYKEALDFAIAAQCLDPS 473 (751)
Q Consensus 442 ~a~~~~~~~l~~l~~~~~a~~~~~~~~~~~p~ 473 (751)
++++.++.++..++++.+|+.+.++.....|.
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 57888999999999999999998877766663
No 479
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=73.96 E-value=1.2e+02 Score=31.55 Aligned_cols=218 Identities=12% Similarity=0.120 Sum_probs=112.8
Q ss_pred CCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEE--EEecccCCcceEEEEEecCCCCcEEEEEECCCcEEEEECCC
Q 004477 49 HQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLL--HSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSR 126 (751)
Q Consensus 49 H~~~V~~l~~s~dg~~LaSgs~Dg~I~IWd~~~~~~~--~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~Dg~V~vwd~~~ 126 (751)
+..++.+.-|.....+-..++.+ .-+|...-...+ +.+ .|-..+|.++.|+|+ .+.|++......-.||=-..
T Consensus 42 ~~~~f~~a~~k~~~~~~~~~~r~--~~~~l~~y~~~i~akpi-~g~~~nvS~LTynp~--~rtLFav~n~p~~iVElt~~ 116 (316)
T COG3204 42 ATRVFPCAWFKAGQTNGLDLSRY--IARYLLEYRARIDAKPI-LGETANVSSLTYNPD--TRTLFAVTNKPAAIVELTKE 116 (316)
T ss_pred cceeeeeEEEeccccccccccch--hhhccCCceEEEecccc-ccccccccceeeCCC--cceEEEecCCCceEEEEecC
Confidence 44555555555444455555555 556654322111 113 566777999999999 46666666666666664443
Q ss_pred CCCCCCCCCCCCCceee--cccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCCCCCCCCCCccceEEEecccCc
Q 004477 127 FSGRGLDDNAITPSALY--QCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGA 204 (751)
Q Consensus 127 ~~~~~~~~~~~~~~~~~--~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~ 204 (751)
+ +.+.++ .+-.+ .-.|++.- ++.+.++-=.++.+.++.+...... .....-
T Consensus 117 G----------dlirtiPL~g~~D-pE~Ieyig-~n~fvi~dER~~~l~~~~vd~~t~~--------------~~~~~~- 169 (316)
T COG3204 117 G----------DLIRTIPLTGFSD-PETIEYIG-GNQFVIVDERDRALYLFTVDADTTV--------------ISAKVQ- 169 (316)
T ss_pred C----------ceEEEecccccCC-hhHeEEec-CCEEEEEehhcceEEEEEEcCCccE--------------Eeccce-
Confidence 2 223322 22111 23466665 4455555556888888877665321 000000
Q ss_pred eecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCccccCCCCCCCCccccccccccccCCccccceEE
Q 004477 205 KRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTH 284 (751)
Q Consensus 205 ~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~vt~ 284 (751)
...+....+.....-.++|.|.+ +.|.++=.-.-++||........-.......+.. .+ .-.-..|.+
T Consensus 170 ~i~L~~~~k~N~GfEGlA~d~~~-~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~-~~----------~~f~~DvSg 237 (316)
T COG3204 170 KIPLGTTNKKNKGFEGLAWDPVD-HRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTA-DR----------DLFVLDVSG 237 (316)
T ss_pred EEeccccCCCCcCceeeecCCCC-ceEEEEEccCCcEEEEEecCCcccccccccCccc-cc----------ceEeecccc
Confidence 11122223335567789999964 5566666666677777653321111000000000 00 000113788
Q ss_pred EEEcCCCCEEE-EEeCCCcEEEEECCC
Q 004477 285 VTFSPNGEEVL-LSYSGEHVYLMDVNH 310 (751)
Q Consensus 285 v~fspdg~~Ll-~~s~d~~I~lwdl~~ 310 (751)
+.|++....|+ .+-.++.+.-.|...
T Consensus 238 l~~~~~~~~LLVLS~ESr~l~Evd~~G 264 (316)
T COG3204 238 LEFNAITNSLLVLSDESRRLLEVDLSG 264 (316)
T ss_pred ceecCCCCcEEEEecCCceEEEEecCC
Confidence 89998555444 455577777777666
No 480
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=73.75 E-value=61 Score=40.10 Aligned_cols=166 Identities=18% Similarity=0.217 Sum_probs=87.4
Q ss_pred CCCcEEEEeCCCCeEEEEecccCCcceEEEEEecCCCC------cEEEEEECCCcEEEEECCCCCCCCCCCCCCCCceee
Q 004477 70 DDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSD------ELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALY 143 (751)
Q Consensus 70 ~Dg~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~s~~------~~l~sgs~Dg~V~vwd~~~~~~~~~~~~~~~~~~~~ 143 (751)
-|..+.+|++.++.....+ .+-...|..|.......| ++++.-+.--.|.|+-+........ .........+
T Consensus 97 iDn~L~lWny~~~~e~~~~-d~~shtIl~V~LvkPkpgvFv~~IqhlLvvaT~~ei~ilgV~~~~~~~~-~~~f~~~~~i 174 (1311)
T KOG1900|consen 97 IDNNLFLWNYESDNELAEY-DGLSHTILKVGLVKPKPGVFVPEIQHLLVVATPVEIVILGVSFDEFTGE-LSIFNTSFKI 174 (1311)
T ss_pred eCCeEEEEEcCCCCccccc-cchhhhheeeeeecCCCCcchhhhheeEEecccceEEEEEEEeccccCc-ccccccceee
Confidence 4778999999987776666 566666777764422112 3344444445666666553221110 0000011222
Q ss_pred cccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCCCCCCCCCCccceEEEecccC----ceecccCCC-CCccce
Q 004477 144 QCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCG----AKRSLADPP-KQTLSL 218 (751)
Q Consensus 144 ~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~~~~-~~~~~v 218 (751)
....-.|.++.. .++|++|.+ |.||.|.-.-...... - ....|..+ ++..+ -...+...+ .+..+|
T Consensus 175 ~~dg~~V~~I~~-t~nGRIF~~-G~dg~lyEl~Yq~~~g--W---f~~rc~Ki--clt~s~ls~lvPs~~~~~~~~~dpI 245 (1311)
T KOG1900|consen 175 SVDGVSVNCITY-TENGRIFFA-GRDGNLYELVYQAEDG--W---FGSRCRKI--CLTKSVLSSLVPSLLSVPGSSKDPI 245 (1311)
T ss_pred ecCCceEEEEEe-ccCCcEEEe-ecCCCEEEEEEeccCc--h---hhcccccc--cCchhHHHHhhhhhhcCCCCCCCcc
Confidence 233556788874 447888855 5566554322222110 0 00001111 00000 001122222 456789
Q ss_pred EEEEEeCCCCcEEEEEeCCCeEEEEeCCC
Q 004477 219 KSCDISSTRPHLLLVGGSDAFARLYDRRM 247 (751)
Q Consensus 219 ~~i~~sp~~~~~l~sgs~D~~IriwD~~~ 247 (751)
..+.+... ...+.+-+..++|++||+..
T Consensus 246 ~qi~ID~S-R~IlY~lsek~~v~~Y~i~~ 273 (1311)
T KOG1900|consen 246 RQITIDNS-RNILYVLSEKGTVSAYDIGG 273 (1311)
T ss_pred eeeEeccc-cceeeeeccCceEEEEEccC
Confidence 99999875 57888899999999999975
No 481
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=73.54 E-value=15 Score=36.04 Aligned_cols=76 Identities=17% Similarity=0.126 Sum_probs=57.5
Q ss_pred HHHHHHHHHhhhcCCChhHHHHHhHHHHhcccCCCCCchhhhhHhHHHHHhhcccccchhhhHHHhhHHHhcCCCCCcch
Q 004477 364 RMLVEIARNSLEEGKHPYYGIEACNEVLEGHLSGIGPMLRHECLCIRAALLLKRKWKNDAQMAIRDCYNARRIDSSSFRA 443 (751)
Q Consensus 364 ~~l~~~~~~~~~~g~~~~~ai~~~~~~i~~~~~~~~~~~~~~~~~~ra~~~~~r~w~~d~y~al~d~~~a~~~~~~~~~a 443 (751)
..+-..+...+..|+ |..|+..+..++..++.+. --.+|
T Consensus 6 ~~lY~~a~~~~~~g~-y~~Ai~~f~~l~~~~P~s~----------------------------------------~a~~A 44 (203)
T PF13525_consen 6 EALYQKALEALQQGD-YEEAIKLFEKLIDRYPNSP----------------------------------------YAPQA 44 (203)
T ss_dssp HHHHHHHHHHHHCT--HHHHHHHHHHHHHH-TTST----------------------------------------THHHH
T ss_pred HHHHHHHHHHHHCCC-HHHHHHHHHHHHHHCCCCh----------------------------------------HHHHH
Confidence 456677888889999 9999999999999887651 12347
Q ss_pred HHHHHHHHHHhcchHHHHHHHHHhcccCCCChhhhHH
Q 004477 444 HLYMSEALEQLCKYKEALDFAIAAQCLDPSNSVMAEK 480 (751)
Q Consensus 444 ~~~~~~~l~~l~~~~~a~~~~~~~~~~~p~~~~~~~~ 480 (751)
.+.++.++...+.+.+|...++.+...+|........
T Consensus 45 ~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A 81 (203)
T PF13525_consen 45 QLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYA 81 (203)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhH
Confidence 8889999999999999999999999999987755433
No 482
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=73.19 E-value=32 Score=40.68 Aligned_cols=106 Identities=16% Similarity=0.077 Sum_probs=74.6
Q ss_pred cchhHHHHHHHHHhhhcCCChhHHHHHhHHHHhcccCCCCCchhhhhHhHHHHHhhcccccchhhhHHHhhHHHhcCCCC
Q 004477 360 LGKCRMLVEIARNSLEEGKHPYYGIEACNEVLEGHLSGIGPMLRHECLCIRAALLLKRKWKNDAQMAIRDCYNARRIDSS 439 (751)
Q Consensus 360 ~~~~~~l~~~~~~~~~~g~~~~~ai~~~~~~i~~~~~~~~~~~~~~~~~~ra~~~~~r~w~~d~y~al~d~~~a~~~~~~ 439 (751)
+.....+...+...+..|+ +..|+..+..++...+... ..+...+.++..+ |+.-.|+.-..+++.++|.
T Consensus 73 p~~~~~l~~l~~~~l~~g~-~~~A~~~l~~~l~~~P~~~------~a~~~la~~l~~~---g~~~~Ai~~l~~Al~l~P~ 142 (656)
T PRK15174 73 KNGRDLLRRWVISPLASSQ-PDAVLQVVNKLLAVNVCQP------EDVLLVASVLLKS---KQYATVADLAEQAWLAFSG 142 (656)
T ss_pred CCchhHHHHHhhhHhhcCC-HHHHHHHHHHHHHhCCCCh------HHHHHHHHHHHHc---CCHHHHHHHHHHHHHhCCC
Confidence 3333334444455555666 7788888888888776652 2334445555554 4456678778888999999
Q ss_pred CcchHHHHHHHHHHhcchHHHHHHHHHhcccCCCCh
Q 004477 440 SFRAHLYMSEALEQLCKYKEALDFAIAAQCLDPSNS 475 (751)
Q Consensus 440 ~~~a~~~~~~~l~~l~~~~~a~~~~~~~~~~~p~~~ 475 (751)
+..++..+++++..+|++.+|...+.......|...
T Consensus 143 ~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~~ 178 (656)
T PRK15174 143 NSQIFALHLRTLVLMDKELQAISLARTQAQEVPPRG 178 (656)
T ss_pred cHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCCH
Confidence 999999999999999999999888877766666554
No 483
>PHA02790 Kelch-like protein; Provisional
Probab=72.70 E-value=98 Score=35.00 Aligned_cols=64 Identities=9% Similarity=0.073 Sum_probs=33.4
Q ss_pred CCCEEEEEeCC--CcEEEEeCCCCeEEEEecccCCcceEEEEEecCCCCcEEEEEECCC---cEEEEECCCC
Q 004477 61 KGSLLISGSDD--THINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDA---EVRLFNLSRF 127 (751)
Q Consensus 61 dg~~LaSgs~D--g~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~Dg---~V~vwd~~~~ 127 (751)
+|.+.+.||.+ ..+..||..+++....-...+...-.+++.. + |.+.+.||.++ .+..||..+.
T Consensus 318 ~~~iYviGG~~~~~sve~ydp~~n~W~~~~~l~~~r~~~~~~~~-~--g~IYviGG~~~~~~~ve~ydp~~~ 386 (480)
T PHA02790 318 NNKLYVVGGLPNPTSVERWFHGDAAWVNMPSLLKPRCNPAVASI-N--NVIYVIGGHSETDTTTEYLLPNHD 386 (480)
T ss_pred CCEEEEECCcCCCCceEEEECCCCeEEECCCCCCCCcccEEEEE-C--CEEEEecCcCCCCccEEEEeCCCC
Confidence 56667777754 3577788765543221111111111122222 3 57778877653 4677887753
No 484
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=72.59 E-value=7.3 Score=27.50 Aligned_cols=35 Identities=29% Similarity=0.304 Sum_probs=31.1
Q ss_pred chHHHHHHHHHHhcchHHHHHHHHHhcccCCCChh
Q 004477 442 RAHLYMSEALEQLCKYKEALDFAIAAQCLDPSNSV 476 (751)
Q Consensus 442 ~a~~~~~~~l~~l~~~~~a~~~~~~~~~~~p~~~~ 476 (751)
.+++.+++++..+|++.+|...++......|.+..
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~ 36 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPE 36 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHH
Confidence 46788999999999999999999999999997654
No 485
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=71.95 E-value=23 Score=38.95 Aligned_cols=92 Identities=16% Similarity=0.180 Sum_probs=62.6
Q ss_pred EEEECCCCCEEEEEeCCCcEEE---EeCC-----CCeEEEEe--cccCC--cceEEEEEecC---------CCCcEEEEE
Q 004477 55 AISWNSKGSLLISGSDDTHINV---WSYS-----SRKLLHSI--ETGHS--ANVFCTKFVPE---------TSDELVVSG 113 (751)
Q Consensus 55 ~l~~s~dg~~LaSgs~Dg~I~I---Wd~~-----~~~~~~~l--~~~h~--~~V~~v~fsp~---------s~~~~l~sg 113 (751)
.++.+|+|++||.|..+..+.+ |+.. .+...... ...+. ..|+++.|.|- .+...|+.|
T Consensus 6 ~isls~~~d~laiA~~~r~vil~~~w~~~~~~~~~~~~~~~~~g~l~~~~~e~ITsi~clpl~s~~~s~~~~dw~~I~VG 85 (415)
T PF14655_consen 6 SISLSPDGDLLAIARGQRLVILTSKWDSSRKGENENTYSISWSGPLDDEPGECITSILCLPLSSQKRSTGGPDWTCIAVG 85 (415)
T ss_pred eEEecCCCCEEEEEcCCEEEEEEeeccccccCCCCCeEEEEeeeeccCCCCCEEEEEEEEEeecccccCCCCCcEEEEEE
Confidence 4678999999999988887777 6441 11121111 11222 57888888765 124678899
Q ss_pred ECCCcEEEEECCCCCCCCCCCCCCCCceeecccCCceeEEEEec
Q 004477 114 AGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEV 157 (751)
Q Consensus 114 s~Dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp 157 (751)
-.+|.|++|.... ..+..-..|..+|..|.+..
T Consensus 86 ~ssG~vrfyte~G-----------~LL~~Q~~h~~pV~~ik~~~ 118 (415)
T PF14655_consen 86 TSSGYVRFYTENG-----------VLLLSQLLHEEPVLKIKCRS 118 (415)
T ss_pred ecccEEEEEeccc-----------hHHHHHhcCccceEEEEecc
Confidence 9999999998852 34555566899998888753
No 486
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=71.21 E-value=23 Score=33.87 Aligned_cols=32 Identities=13% Similarity=0.015 Sum_probs=25.3
Q ss_pred CceeEEEEecC-----CCCEEEEEeCCCcEEEEecCC
Q 004477 148 RRVKKLAVEVG-----NPHVVWSASEDGTLRQHDFRQ 179 (751)
Q Consensus 148 ~~V~~l~~sp~-----~~~~l~s~s~Dg~I~iwDlr~ 179 (751)
..|..++|||. ..-+|+..+.+|.|.+|.-..
T Consensus 86 ~~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~ 122 (173)
T PF12657_consen 86 SQVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPG 122 (173)
T ss_pred ccEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCC
Confidence 37899999983 234888999999999997543
No 487
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=71.03 E-value=45 Score=34.59 Aligned_cols=95 Identities=12% Similarity=0.161 Sum_probs=59.5
Q ss_pred CcEEEEeCCCCeEEEEecccCCcceEEEEEecCCCCcEEEEEE------CCCcEEEEECCCCCCCCCCCCCCCCceeecc
Q 004477 72 THINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGA------GDAEVRLFNLSRFSGRGLDDNAITPSALYQC 145 (751)
Q Consensus 72 g~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs------~Dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~ 145 (751)
..|++||+.+.+...-- .+-.+.|.++.|..+ +++++.|. ....+..||+.... ...+..
T Consensus 16 ~~lC~yd~~~~qW~~~g-~~i~G~V~~l~~~~~--~~Llv~G~ft~~~~~~~~la~yd~~~~~-----------w~~~~~ 81 (281)
T PF12768_consen 16 PGLCLYDTDNSQWSSPG-NGISGTVTDLQWASN--NQLLVGGNFTLNGTNSSNLATYDFKNQT-----------WSSLGG 81 (281)
T ss_pred CEEEEEECCCCEeecCC-CCceEEEEEEEEecC--CEEEEEEeeEECCCCceeEEEEecCCCe-----------eeecCC
Confidence 35999998876654433 556789999999955 57777775 35678899988632 222222
Q ss_pred -----cCCceeEEEEecCCCCEEE-EEe-CC--CcEEEEecCCC
Q 004477 146 -----HTRRVKKLAVEVGNPHVVW-SAS-ED--GTLRQHDFRQG 180 (751)
Q Consensus 146 -----h~~~V~~l~~sp~~~~~l~-s~s-~D--g~I~iwDlr~~ 180 (751)
-.++|..+.+...+..-++ .|. .+ ..|..||=.+-
T Consensus 82 ~~s~~ipgpv~a~~~~~~d~~~~~~aG~~~~g~~~l~~~dGs~W 125 (281)
T PF12768_consen 82 GSSNSIPGPVTALTFISNDGSNFWVAGRSANGSTFLMKYDGSSW 125 (281)
T ss_pred cccccCCCcEEEEEeeccCCceEEEeceecCCCceEEEEcCCce
Confidence 2367888877654544444 433 23 34666664443
No 488
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=70.99 E-value=4.9 Score=46.89 Aligned_cols=72 Identities=15% Similarity=0.224 Sum_probs=50.2
Q ss_pred CcEEEEEECC---CCCEEEEEeCCCcEEEEeCCCCeEEEEecccCCcceEEEE-----------EecCCCCcEEEEEECC
Q 004477 51 GCVNAISWNS---KGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTK-----------FVPETSDELVVSGAGD 116 (751)
Q Consensus 51 ~~V~~l~~s~---dg~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~V~~v~-----------fsp~s~~~~l~sgs~D 116 (751)
..+.-|.|.| +.-++..+-+++.|++.+..+-.. .+..+|...+..++ .+|| |..|++++.|
T Consensus 181 s~~~~V~wcp~~~~~~~ic~~~~~~~i~lL~~~ra~~--~l~rsHs~~~~d~a~~~~g~~~l~~lSpD--Gtv~a~a~~d 256 (1283)
T KOG1916|consen 181 SDPQLVSWCPIAVNKVYICYGLKGGEIRLLNINRALR--SLFRSHSQRVTDMAFFAEGVLKLASLSPD--GTVFAWAISD 256 (1283)
T ss_pred CCcceeeecccccccceeeeccCCCceeEeeechHHH--HHHHhcCCCcccHHHHhhchhhheeeCCC--CcEEEEeecC
Confidence 3445566665 566777888889998877654322 33356776666554 4677 8889999999
Q ss_pred CcEEEEECCC
Q 004477 117 AEVRLFNLSR 126 (751)
Q Consensus 117 g~V~vwd~~~ 126 (751)
|.|+.|.+.-
T Consensus 257 G~v~f~Qiyi 266 (1283)
T KOG1916|consen 257 GSVGFYQIYI 266 (1283)
T ss_pred Cccceeeeee
Confidence 9998888764
No 489
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=70.74 E-value=11 Score=40.63 Aligned_cols=54 Identities=26% Similarity=0.176 Sum_probs=48.8
Q ss_pred hhhhHHHhhHHHhcCCCCCcchHHHHHHHHHHhcchHHHHHHHHHhcccCCCCh
Q 004477 422 DAQMAIRDCYNARRIDSSSFRAHLYMSEALEQLCKYKEALDFAIAAQCLDPSNS 475 (751)
Q Consensus 422 d~y~al~d~~~a~~~~~~~~~a~~~~~~~l~~l~~~~~a~~~~~~~~~~~p~~~ 475 (751)
+...|+.-...|+.++|.+..+++.++.|+..++++.+|+..+..+..+.|...
T Consensus 17 ~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~ 70 (356)
T PLN03088 17 DFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLA 70 (356)
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCH
Confidence 345678888999999999999999999999999999999999999999888755
No 490
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=70.67 E-value=28 Score=27.47 Aligned_cols=55 Identities=31% Similarity=0.305 Sum_probs=47.0
Q ss_pred chhhhHHHhhHHHhcCCCCCcchHHHHHHHHHHhcchHHHHHHHHHhcccCCCCh
Q 004477 421 NDAQMAIRDCYNARRIDSSSFRAHLYMSEALEQLCKYKEALDFAIAAQCLDPSNS 475 (751)
Q Consensus 421 ~d~y~al~d~~~a~~~~~~~~~a~~~~~~~l~~l~~~~~a~~~~~~~~~~~p~~~ 475 (751)
++...|+.-+..++.+.|....+++.++.++...+++.+|..++.......|...
T Consensus 14 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 68 (100)
T cd00189 14 GDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNA 68 (100)
T ss_pred hcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcch
Confidence 3455677778888999999989999999999999999999999998888777654
No 491
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=70.15 E-value=38 Score=41.89 Aligned_cols=88 Identities=15% Similarity=0.138 Sum_probs=68.3
Q ss_pred hhHHHHHhHHHHhcccCCCCCchhhhhHhHHHHHhhcccccchhhhHHHhhHHHhcCCCCCcchHHHHHHHHHHhcchHH
Q 004477 380 PYYGIEACNEVLEGHLSGIGPMLRHECLCIRAALLLKRKWKNDAQMAIRDCYNARRIDSSSFRAHLYMSEALEQLCKYKE 459 (751)
Q Consensus 380 ~~~ai~~~~~~i~~~~~~~~~~~~~~~~~~ra~~~~~r~w~~d~y~al~d~~~a~~~~~~~~~a~~~~~~~l~~l~~~~~ 459 (751)
+..|+..|.+++...+. ...+.+.+.++.+.+ +.-.|+.....++.++|.+..++..++.+|...|++.+
T Consensus 592 ~~eAl~~~~~AL~l~P~-------~~a~~~LA~~l~~lG---~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~ee 661 (987)
T PRK09782 592 PELALNDLTRSLNIAPS-------ANAYVARATIYRQRH---NVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQ 661 (987)
T ss_pred HHHHHHHHHHHHHhCCC-------HHHHHHHHHHHHHCC---CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHH
Confidence 66677777777764432 245667777766653 45567777888999999999999999999999999999
Q ss_pred HHHHHHHhcccCCCChhh
Q 004477 460 ALDFAIAAQCLDPSNSVM 477 (751)
Q Consensus 460 a~~~~~~~~~~~p~~~~~ 477 (751)
|+.++.......|.+...
T Consensus 662 Ai~~l~~AL~l~P~~~~a 679 (987)
T PRK09782 662 SREMLERAHKGLPDDPAL 679 (987)
T ss_pred HHHHHHHHHHhCCCCHHH
Confidence 999999998888977643
No 492
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=69.67 E-value=1e+02 Score=30.83 Aligned_cols=126 Identities=11% Similarity=0.045 Sum_probs=66.9
Q ss_pred CCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEecccCC--------cceEEEEEecCCCCcEEEEEECCCcEEE
Q 004477 50 QGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHS--------ANVFCTKFVPETSDELVVSGAGDAEVRL 121 (751)
Q Consensus 50 ~~~V~~l~~s~dg~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~--------~~V~~v~fsp~s~~~~l~sgs~Dg~V~v 121 (751)
+...|.-..+|+|++.+-.=.|-.- +.....+.+ .....+|. +--+.++|..+. -.+.++-+.+-+|.-
T Consensus 108 knR~NDgkvdP~Gryy~GtMad~~~-~le~~~g~L-y~~~~~h~v~~i~~~v~IsNgl~Wd~d~-K~fY~iDsln~~V~a 184 (310)
T KOG4499|consen 108 KNRLNDGKVDPDGRYYGGTMADFGD-DLEPIGGEL-YSWLAGHQVELIWNCVGISNGLAWDSDA-KKFYYIDSLNYEVDA 184 (310)
T ss_pred hcccccCccCCCCceeeeeeccccc-cccccccEE-EEeccCCCceeeehhccCCccccccccC-cEEEEEccCceEEee
Confidence 3455666678889885422222111 112112222 22223332 223467888664 355567788889988
Q ss_pred EECCCCCCCCCCCCCCCCceeecc----cCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCC
Q 004477 122 FNLSRFSGRGLDDNAITPSALYQC----HTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSS 182 (751)
Q Consensus 122 wd~~~~~~~~~~~~~~~~~~~~~~----h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~ 182 (751)
||.....+..... +.+..++. .....-.++... ++++++++-.-|+|...|..+++.
T Consensus 185 ~dyd~~tG~~snr---~~i~dlrk~~~~e~~~PDGm~ID~-eG~L~Va~~ng~~V~~~dp~tGK~ 245 (310)
T KOG4499|consen 185 YDYDCPTGDLSNR---KVIFDLRKSQPFESLEPDGMTIDT-EGNLYVATFNGGTVQKVDPTTGKI 245 (310)
T ss_pred eecCCCcccccCc---ceeEEeccCCCcCCCCCCcceEcc-CCcEEEEEecCcEEEEECCCCCcE
Confidence 9966544433200 11111111 011122344444 678888888889999999998874
No 493
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=68.07 E-value=19 Score=31.04 Aligned_cols=54 Identities=24% Similarity=0.170 Sum_probs=45.8
Q ss_pred hhhhHHHhhHHHhcCCCCC---cchHHHHHHHHHHhcchHHHHHHHHHhcccCCCCh
Q 004477 422 DAQMAIRDCYNARRIDSSS---FRAHLYMSEALEQLCKYKEALDFAIAAQCLDPSNS 475 (751)
Q Consensus 422 d~y~al~d~~~a~~~~~~~---~~a~~~~~~~l~~l~~~~~a~~~~~~~~~~~p~~~ 475 (751)
+...|+..+..++..+|.+ ..+++.+++++...+++.+|...+..+...+|...
T Consensus 17 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~ 73 (119)
T TIGR02795 17 DYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSP 73 (119)
T ss_pred CHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCC
Confidence 3556777788888888876 46899999999999999999999999998888754
No 494
>PLN02153 epithiospecifier protein
Probab=67.98 E-value=1.7e+02 Score=31.14 Aligned_cols=64 Identities=13% Similarity=0.183 Sum_probs=32.0
Q ss_pred CCCEEEEEeCC-------CcEEEEeCCCCeEEEEecccCCcc----eEEEEEecCCCCcEEEEEECC-----CcEEEEEC
Q 004477 61 KGSLLISGSDD-------THINVWSYSSRKLLHSIETGHSAN----VFCTKFVPETSDELVVSGAGD-----AEVRLFNL 124 (751)
Q Consensus 61 dg~~LaSgs~D-------g~I~IWd~~~~~~~~~l~~~h~~~----V~~v~fsp~s~~~~l~sgs~D-----g~V~vwd~ 124 (751)
++++.+.|+.+ ..+.+||+.+.+-...-..+.... -.++... + +.+++.|+.+ ..|.+||+
T Consensus 32 ~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~p~~~~~~~~~~~~-~--~~iyv~GG~~~~~~~~~v~~yd~ 108 (341)
T PLN02153 32 GDKLYSFGGELKPNEHIDKDLYVFDFNTHTWSIAPANGDVPRISCLGVRMVAV-G--TKLYIFGGRDEKREFSDFYSYDT 108 (341)
T ss_pred CCEEEEECCccCCCCceeCcEEEEECCCCEEEEcCccCCCCCCccCceEEEEE-C--CEEEEECCCCCCCccCcEEEEEC
Confidence 45666767653 257788887654332110111000 0112222 2 4677777754 24777887
Q ss_pred CCC
Q 004477 125 SRF 127 (751)
Q Consensus 125 ~~~ 127 (751)
.+.
T Consensus 109 ~t~ 111 (341)
T PLN02153 109 VKN 111 (341)
T ss_pred CCC
Confidence 753
No 495
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=67.77 E-value=22 Score=41.05 Aligned_cols=94 Identities=14% Similarity=0.261 Sum_probs=66.6
Q ss_pred ccccccchhhhccccccEEeccCCCcEEEEEEC--CCCCEEEEEeCCCcEEEEeCC---------CCeEEEEe-cccCC-
Q 004477 27 NHSLQMHSSLVRRLSQERELEGHQGCVNAISWN--SKGSLLISGSDDTHINVWSYS---------SRKLLHSI-ETGHS- 93 (751)
Q Consensus 27 ~~~l~~~~~~i~~~~~~~~L~gH~~~V~~l~~s--~dg~~LaSgs~Dg~I~IWd~~---------~~~~~~~l-~~~h~- 93 (751)
..+|.+|+.-...+.....+ ...+.|.++.|. |+|+.+++-|-...|.|+.-. +...+..+ ...|+
T Consensus 50 ~~~LtIWD~~~~~lE~~~~f-~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~~~~p~w~~i~~i~i~~~T~ 128 (631)
T PF12234_consen 50 RSELTIWDTRSGVLEYEESF-SEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYTNKGPSWAPIRKIDISSHTP 128 (631)
T ss_pred CCEEEEEEcCCcEEEEeeee-cCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhhcCCcccceeEEEEeecCCC
Confidence 46788888877777777777 467899999996 589999999999999998532 11233332 13444
Q ss_pred cceEEEEEecCCCCcEEEEEECCCcEEEEECC
Q 004477 94 ANVFCTKFVPETSDELVVSGAGDAEVRLFNLS 125 (751)
Q Consensus 94 ~~V~~v~fsp~s~~~~l~sgs~Dg~V~vwd~~ 125 (751)
.+|.+..|.++ |.+++.+ .+.+.|+|-.
T Consensus 129 h~Igds~Wl~~--G~LvV~s--GNqlfv~dk~ 156 (631)
T PF12234_consen 129 HPIGDSIWLKD--GTLVVGS--GNQLFVFDKW 156 (631)
T ss_pred CCccceeEecC--CeEEEEe--CCEEEEECCC
Confidence 57999999998 6555544 3567777654
No 496
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=67.62 E-value=82 Score=34.45 Aligned_cols=113 Identities=7% Similarity=0.093 Sum_probs=66.4
Q ss_pred EEEEEECCCCCEEEEEeCCCcEEEEeCC--CCeEEEEecccCCcceEEEEEecCCCCcEEEEEECCCcEEEEECCCCCCC
Q 004477 53 VNAISWNSKGSLLISGSDDTHINVWSYS--SRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGR 130 (751)
Q Consensus 53 V~~l~~s~dg~~LaSgs~Dg~I~IWd~~--~~~~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~Dg~V~vwd~~~~~~~ 130 (751)
-+.+-|....+.|. |-..|.+.=|-++ .......+.....++|.+++|+++ .+.||.--.|++|.+++....+..
T Consensus 25 sngvFfDDaNkqlf-avrSggatgvvvkgpndDVpiSfdm~d~G~I~SIkFSlD--nkilAVQR~~~~v~f~nf~~d~~~ 101 (657)
T KOG2377|consen 25 SNGVFFDDANKQLF-AVRSGGATGVVVKGPNDDVPISFDMDDKGEIKSIKFSLD--NKILAVQRTSKTVDFCNFIPDNSQ 101 (657)
T ss_pred ccceeeccCcceEE-EEecCCeeEEEEeCCCCCCCceeeecCCCceeEEEeccC--cceEEEEecCceEEEEecCCCchh
Confidence 34455554333333 3333456666554 223444554567789999999999 799999999999999998432111
Q ss_pred CCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEec
Q 004477 131 GLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDF 177 (751)
Q Consensus 131 ~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDl 177 (751)
......++..+..|....|+. + .-++--+..| +-+|-.
T Consensus 102 ------l~~~~~ck~k~~~IlGF~W~~-s-~e~A~i~~~G-~e~y~v 139 (657)
T KOG2377|consen 102 ------LEYTQECKTKNANILGFCWTS-S-TEIAFITDQG-IEFYQV 139 (657)
T ss_pred ------hHHHHHhccCcceeEEEEEec-C-eeEEEEecCC-eEEEEE
Confidence 122334444556678888875 2 3344333333 444543
No 497
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=67.53 E-value=52 Score=30.94 Aligned_cols=95 Identities=11% Similarity=-0.048 Sum_probs=67.1
Q ss_pred hHHHHHHHHHhhhcCCChhHHHHHhHHHHhcccCCCCCchhhhhHhHHHHHhhcccccchhhhHHHhhHHHhcCCCCCcc
Q 004477 363 CRMLVEIARNSLEEGKHPYYGIEACNEVLEGHLSGIGPMLRHECLCIRAALLLKRKWKNDAQMAIRDCYNARRIDSSSFR 442 (751)
Q Consensus 363 ~~~l~~~~~~~~~~g~~~~~ai~~~~~~i~~~~~~~~~~~~~~~~~~ra~~~~~r~w~~d~y~al~d~~~a~~~~~~~~~ 442 (751)
...+...+......+. +..|+..+..++...+.. ......+.+.+.++...+.. -.|+..+.+++.++|....
T Consensus 35 a~~~~~~g~~~~~~g~-~~~A~~~~~~al~l~~~~---~~~~~~~~~lg~~~~~~g~~---~eA~~~~~~Al~~~~~~~~ 107 (168)
T CHL00033 35 AFTYYRDGMSAQSEGE-YAEALQNYYEAMRLEIDP---YDRSYILYNIGLIHTSNGEH---TKALEYYFQALERNPFLPQ 107 (168)
T ss_pred HHHHHHHHHHHHHcCC-HHHHHHHHHHHHhccccc---hhhHHHHHHHHHHHHHcCCH---HHHHHHHHHHHHhCcCcHH
Confidence 3444455666666677 888999999988764332 11123677888888887764 4577788999999999999
Q ss_pred hHHHHHHHHH-------HhcchHHHHHHH
Q 004477 443 AHLYMSEALE-------QLCKYKEALDFA 464 (751)
Q Consensus 443 a~~~~~~~l~-------~l~~~~~a~~~~ 464 (751)
++..++..+. .+|++.+|....
T Consensus 108 ~~~~la~i~~~~~~~~~~~g~~~~A~~~~ 136 (168)
T CHL00033 108 ALNNMAVICHYRGEQAIEQGDSEIAEAWF 136 (168)
T ss_pred HHHHHHHHHHHhhHHHHHcccHHHHHHHH
Confidence 9988888888 666666554443
No 498
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=66.99 E-value=35 Score=36.49 Aligned_cols=114 Identities=18% Similarity=0.170 Sum_probs=58.8
Q ss_pred cEEEEEECCCCCEEEEEeCCCcEEEEeCCCCeE---EEEe---cccCCcceEEEEEecC--CCCcEEEEEEC------CC
Q 004477 52 CVNAISWNSKGSLLISGSDDTHINVWSYSSRKL---LHSI---ETGHSANVFCTKFVPE--TSDELVVSGAG------DA 117 (751)
Q Consensus 52 ~V~~l~~s~dg~~LaSgs~Dg~I~IWd~~~~~~---~~~l---~~~h~~~V~~v~fsp~--s~~~~l~sgs~------Dg 117 (751)
..+.|+|.|+|++|++ ...|.|.+++ ..+.. +..+ ..........++|+|+ .++.+.++-+. ..
T Consensus 3 ~P~~~a~~pdG~l~v~-e~~G~i~~~~-~~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~~~~ 80 (331)
T PF07995_consen 3 NPRSMAFLPDGRLLVA-ERSGRIWVVD-KDGSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDGGDN 80 (331)
T ss_dssp SEEEEEEETTSCEEEE-ETTTEEEEEE-TTTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSSSSE
T ss_pred CceEEEEeCCCcEEEE-eCCceEEEEe-CCCcCcceecccccccccccCCcccceeccccCCCCEEEEEEEcccCCCCCc
Confidence 4578999999988776 4599999999 44443 2222 1344567899999994 21333333332 12
Q ss_pred --cEEEEECCCCCCCCCCCCCCC-Cceeecc---cCCceeEEEEecCCCCEEEEEeCCCc
Q 004477 118 --EVRLFNLSRFSGRGLDDNAIT-PSALYQC---HTRRVKKLAVEVGNPHVVWSASEDGT 171 (751)
Q Consensus 118 --~V~vwd~~~~~~~~~~~~~~~-~~~~~~~---h~~~V~~l~~sp~~~~~l~s~s~Dg~ 171 (751)
.|.-|......... ...+ .+..+.. ....-..|+|.| ++.++++.+..+.
T Consensus 81 ~~~v~r~~~~~~~~~~---~~~~~l~~~~p~~~~~~H~g~~l~fgp-DG~LYvs~G~~~~ 136 (331)
T PF07995_consen 81 DNRVVRFTLSDGDGDL---SSEEVLVTGLPDTSSGNHNGGGLAFGP-DGKLYVSVGDGGN 136 (331)
T ss_dssp EEEEEEEEEETTSCEE---EEEEEEEEEEES-CSSSS-EEEEEE-T-TSEEEEEEB-TTT
T ss_pred ceeeEEEeccCCcccc---ccceEEEEEeCCCCCCCCCCccccCCC-CCcEEEEeCCCCC
Confidence 23333333210000 0000 1111111 233445799999 5588878777655
No 499
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=66.80 E-value=1.8e+02 Score=32.53 Aligned_cols=97 Identities=14% Similarity=0.093 Sum_probs=54.4
Q ss_pred CCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCCCCCCCC--CCccceEEEecccCceecccCCCCCccceEEEEEe
Q 004477 147 TRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSS--HQECRNILLDLRCGAKRSLADPPKQTLSLKSCDIS 224 (751)
Q Consensus 147 ~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~i~~s 224 (751)
...|..+..++ .|..++-.|.+|.+.++=.+....-.....+ .-.|+.+-++. .+ +.......+..++|+
T Consensus 103 ~feV~~vl~s~-~GS~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~------~~-ftss~~ltl~Qa~WH 174 (741)
T KOG4460|consen 103 LFEVYQVLLSP-TGSHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAE------RF-FTSSTSLTLKQAAWH 174 (741)
T ss_pred eEEEEEEEecC-CCceEEEecCCeeEEEEchhhcCccceecCCCceEEEEeecccc------ee-eccCCceeeeecccc
Confidence 45678888888 4566667777887766542221100000000 01122111110 01 111134567788999
Q ss_pred CCC--CcEEEEEeCCCeEEEEeCCCCCCc
Q 004477 225 STR--PHLLLVGGSDAFARLYDRRMLPPL 251 (751)
Q Consensus 225 p~~--~~~l~sgs~D~~IriwD~~~~~~~ 251 (751)
|+. ...++.-.+|.+||+||......+
T Consensus 175 P~S~~D~hL~iL~sdnviRiy~lS~~tel 203 (741)
T KOG4460|consen 175 PSSILDPHLVLLTSDNVIRIYSLSEPTEL 203 (741)
T ss_pred CCccCCceEEEEecCcEEEEEecCCcchh
Confidence 964 357777889999999999877654
No 500
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=66.46 E-value=25 Score=24.07 Aligned_cols=24 Identities=17% Similarity=0.433 Sum_probs=18.6
Q ss_pred CCCCEEEEEe-CCCcEEEEECCCCC
Q 004477 289 PNGEEVLLSY-SGEHVYLMDVNHAG 312 (751)
Q Consensus 289 pdg~~Ll~~s-~d~~I~lwdl~~~~ 312 (751)
|++++|+++. .++.|.++|..+..
T Consensus 1 pd~~~lyv~~~~~~~v~~id~~~~~ 25 (42)
T TIGR02276 1 PDGTKLYVTNSGSNTVSVIDTATNK 25 (42)
T ss_pred CCCCEEEEEeCCCCEEEEEECCCCe
Confidence 6788777765 58999999998754
Done!