BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 004479
(750 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3J08|A Chain A, High Resolution Helical Reconstruction Of The Bacterial
P-Type Atpase Copper Transporter Copa
pdb|3J08|B Chain B, High Resolution Helical Reconstruction Of The Bacterial
P-Type Atpase Copper Transporter Copa
Length = 645
Score = 164 bits (414), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 137/484 (28%), Positives = 229/484 (47%), Gaps = 46/484 (9%)
Query: 244 SVPVHDVEVGSYILVGAGEAVPVDCEVYQGTATITIEHLTGEVKPLEAKVGDRIPGGARN 303
+VPV +V VG ++V GE +PVD V +G + + ++GE P+ GD + G N
Sbjct: 145 AVPVEEVAVGDIVIVRPGEKIPVDGVVVEGESYVDESMISGEPVPVLKSKGDEVFGATIN 204
Query: 304 LDGRMILKATKTWNESTLNRIVQLTEEAQLNKPKLQRWLDEFGEQYSKXXXXLSLAIALI 363
G + ++AT+ E+ L +IV+L E+A +KP +QR D+ + ++ + I
Sbjct: 205 NTGVLKIRATRVGGETLLAQIVKLVEDAMGSKPPIQRLADKVVAYFIP-----TVLLVAI 259
Query: 364 GPFLFKWSFIGTSVCRGSVYRALGLMVAASPCXXXXXX-XXXXXXISSCARKGILLKGGQ 422
F++ W FI + + + ++V A PC + A GIL+K
Sbjct: 260 SAFIY-WYFIAHAPLLFAFTTLIAVLVVACPCAFGLATPTALTVGMGKGAELGILIKNAD 318
Query: 423 VLDALASCHTIAFDKTGTLTTGGLMFKAIEPIYGHWIRSKKTHDISCCIPNCEKEALAVA 482
L+ + FDKTGTLT G + P+ G E+E L +A
Sbjct: 319 ALEVAEKVTAVIFDKTGTLTKGKPEVTDLVPLNGD-----------------ERELLRLA 361
Query: 483 AAMEKGTTHPIGRAVVDHSIGKDLPSVSIDRFEYFPGRGLTATVNGIESGTEGGKELKAS 542
A E+ + HPI A+V ++ + ++ E G G+ A +GI G K L
Sbjct: 362 AIAERRSEHPIAEAIVKKALEHGIELGEPEKVEVIAGEGVVA--DGI---LVGNKRLMED 416
Query: 543 LGSVDFITSLCKSEDESRKIKEAVNGSSYGRGFVHAALSVNEKVTLIHLEDRPRPGVSDV 602
G E R+ K AV + GR V ++V++ L++ +P V
Sbjct: 417 FGVAVSNEVELALEKLEREAKTAVIVARNGR--VEGIIAVSDT-----LKESAKPAVQ-- 467
Query: 603 IAELKDHARLRVMMLTGDHESSAQRVANAVGINEVYCSLKPEDKLNHVKR-TSRDMGGGL 661
ELK ++V M+TGD+ SA+ ++ + ++ V + P K VK+ ++++ +
Sbjct: 468 --ELKRMG-IKVGMITGDNWRSAEAISRELNLDLVIAEVLPHQKSEEVKKLQAKEV---V 521
Query: 662 IMVGEGINDAPALAAATVGIVLAQRASATAIAVADVLLLRNNISGVPFCVAKSRQTTSLV 721
VG+GINDAPALA A +GI + S A+ D++L+R+++ V + SR+T S +
Sbjct: 522 AFVGDGINDAPALAQADLGIAVGS-GSDVAVESGDIVLIRDDLRDVVAAIQLSRKTMSKI 580
Query: 722 KQNV 725
KQN+
Sbjct: 581 KQNI 584
>pdb|3J09|A Chain A, High Resolution Helical Reconstruction Of The Bacterial
P-Type Atpase Copper Transporter Copa
pdb|3J09|B Chain B, High Resolution Helical Reconstruction Of The Bacterial
P-Type Atpase Copper Transporter Copa
Length = 723
Score = 163 bits (413), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 137/484 (28%), Positives = 229/484 (47%), Gaps = 46/484 (9%)
Query: 244 SVPVHDVEVGSYILVGAGEAVPVDCEVYQGTATITIEHLTGEVKPLEAKVGDRIPGGARN 303
+VPV +V VG ++V GE +PVD V +G + + ++GE P+ GD + G N
Sbjct: 223 AVPVEEVAVGDIVIVRPGEKIPVDGVVVEGESYVDESMISGEPVPVLKSKGDEVFGATIN 282
Query: 304 LDGRMILKATKTWNESTLNRIVQLTEEAQLNKPKLQRWLDEFGEQYSKXXXXLSLAIALI 363
G + ++AT+ E+ L +IV+L E+A +KP +QR D+ + ++ + I
Sbjct: 283 NTGVLKIRATRVGGETLLAQIVKLVEDAMGSKPPIQRLADKVVAYFIP-----TVLLVAI 337
Query: 364 GPFLFKWSFIGTSVCRGSVYRALGLMVAASPCXXXXXX-XXXXXXISSCARKGILLKGGQ 422
F++ W FI + + + ++V A PC + A GIL+K
Sbjct: 338 SAFIY-WYFIAHAPLLFAFTTLIAVLVVACPCAFGLATPTALTVGMGKGAELGILIKNAD 396
Query: 423 VLDALASCHTIAFDKTGTLTTGGLMFKAIEPIYGHWIRSKKTHDISCCIPNCEKEALAVA 482
L+ + FDKTGTLT G + P+ G E+E L +A
Sbjct: 397 ALEVAEKVTAVIFDKTGTLTKGKPEVTDLVPLNGD-----------------ERELLRLA 439
Query: 483 AAMEKGTTHPIGRAVVDHSIGKDLPSVSIDRFEYFPGRGLTATVNGIESGTEGGKELKAS 542
A E+ + HPI A+V ++ + ++ E G G+ A +GI G K L
Sbjct: 440 AIAERRSEHPIAEAIVKKALEHGIELGEPEKVEVIAGEGVVA--DGI---LVGNKRLMED 494
Query: 543 LGSVDFITSLCKSEDESRKIKEAVNGSSYGRGFVHAALSVNEKVTLIHLEDRPRPGVSDV 602
G E R+ K AV + GR V ++V++ L++ +P V
Sbjct: 495 FGVAVSNEVELALEKLEREAKTAVIVARNGR--VEGIIAVSDT-----LKESAKPAVQ-- 545
Query: 603 IAELKDHARLRVMMLTGDHESSAQRVANAVGINEVYCSLKPEDKLNHVKR-TSRDMGGGL 661
ELK ++V M+TGD+ SA+ ++ + ++ V + P K VK+ ++++ +
Sbjct: 546 --ELKRMG-IKVGMITGDNWRSAEAISRELNLDLVIAEVLPHQKSEEVKKLQAKEV---V 599
Query: 662 IMVGEGINDAPALAAATVGIVLAQRASATAIAVADVLLLRNNISGVPFCVAKSRQTTSLV 721
VG+GINDAPALA A +GI + S A+ D++L+R+++ V + SR+T S +
Sbjct: 600 AFVGDGINDAPALAQADLGIAVGS-GSDVAVESGDIVLIRDDLRDVVAAIQLSRKTMSKI 658
Query: 722 KQNV 725
KQN+
Sbjct: 659 KQNI 662
>pdb|3RFU|A Chain A, Crystal Structure Of A Copper-Transporting Pib-Type Atpase
pdb|3RFU|B Chain B, Crystal Structure Of A Copper-Transporting Pib-Type Atpase
pdb|3RFU|C Chain C, Crystal Structure Of A Copper-Transporting Pib-Type Atpase
pdb|3RFU|D Chain D, Crystal Structure Of A Copper-Transporting Pib-Type Atpase
Length = 736
Score = 154 bits (388), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 137/487 (28%), Positives = 227/487 (46%), Gaps = 45/487 (9%)
Query: 243 RSVPVHDVEVGSYILVGAGEAVPVDCEVYQGTATITIEHLTGEVKPLEAKVGDRIPGGAR 302
V + +V VG + V GE +PVD EV +G + + +TGE P+ + ++ G
Sbjct: 237 EEVSLDNVAVGDLLRVRPGEKIPVDGEVQEGRSFVDESMVTGEPIPVAKEASAKVIGATI 296
Query: 303 NLDGRMILKATKTWNESTLNRIVQLTEEAQLNKPKLQRWLDEFGEQYSKXXXXLSLAIAL 362
N G ++KA +++ L RIVQ+ +AQ ++ +QR D + A+ L
Sbjct: 297 NQTGSFVMKALHVGSDTMLARIVQMVSDAQRSRAPIQRLADTVSGWFVP-------AVIL 349
Query: 363 IGPFLF-KWSFIGTS-VCRGSVYRALGLMVAASPCXXXXXX-XXXXXXISSCARKGILLK 419
+ F W+ +G + A+ +++ A PC + A+ G+L+K
Sbjct: 350 VAVLSFIVWALLGPQPALSYGLIAAVSVLIIACPCALGLATPMSIMVGVGKGAQSGVLIK 409
Query: 420 GGQVLDALASCHTIAFDKTGTLTTGGLMFKAIEPIYGHWIRSKKTHDISCCIPNCEKEAL 479
+ L+ + +T+ DKTGTLT G I T D E AL
Sbjct: 410 NAEALERMEKVNTLVVDKTGTLTEGHPKLTRI-----------VTDDF------VEDNAL 452
Query: 480 AVAAAMEKGTTHPIGRAVVDHSIGKDLPSVSIDRFEYFPGRGLTATVNGIESGTEGGKEL 539
A+AAA+E + HP+ A+V + K L S++ FE G+G+ V+G + +
Sbjct: 453 ALAAALEHQSEHPLANAIVHAAKEKGLSLGSVEAFEAPTGKGVVGQVDGHHVAIGNARLM 512
Query: 540 KASLGSVDFITSLCKSEDESRKIKEAVNGSSYGRGFVHAALSVNEK-VTLIHLEDRPRPG 598
+ G L + DE R G+G ++V+ K V L+ +ED +
Sbjct: 513 QEHGGDN---APLFEKADELR-----------GKGASVMFMAVDGKTVALLVVEDPIKSS 558
Query: 599 VSDVIAELKDHARLRVMMLTGDHESSAQRVANAVGINEVYCSLKPEDKLNHVKRTSRDMG 658
+ I EL+ + + ++MLTGD + +A+ VA +GI +V + PEDK + + +D G
Sbjct: 559 TPETILELQ-QSGIEIVMLTGDSKRTAEAVAGTLGIKKVVAEIMPEDK-SRIVSELKDKG 616
Query: 659 GGLIMVGEGINDAPALAAATVGIVLAQRASATAIAVADVLLLRNNISGVPFCVAKSRQTT 718
+ M G+G+NDAPALA A +GI + + AI A V LL ++ G+ S T
Sbjct: 617 LIVAMAGDGVNDAPALAKADIGIAMGT-GTDVAIESAGVTLLHGDLRGIAKARRLSESTM 675
Query: 719 SLVKQNV 725
S ++QN+
Sbjct: 676 SNIRQNL 682
>pdb|3SKX|A Chain A, Crystal Structure Of The Atp Binding Domain Of
Archaeoglobus Fulgidus Copb
Length = 280
Score = 113 bits (282), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 92/303 (30%), Positives = 142/303 (46%), Gaps = 39/303 (12%)
Query: 418 LKGGQVLDALASCHTIAFDKTGTLTTGGLMFKAIEPIYGHWIRSKKTHDISCCIPNCEKE 477
++ Q + + FDKTGTLT G + I G + E E
Sbjct: 1 MRDRQAFERAKDLQAVIFDKTGTLTEGRF---GVTDIVG--------------FNHSEDE 43
Query: 478 ALAVAAAMEKGTTHPIGRAVVDHSIGKDLPSVSIDRFEYFPGRGLTATVNGIESGTEGGK 537
L +AA++E + HPI A+V+ + + ++ F PG+G+ VNG
Sbjct: 44 LLQIAASLEARSEHPIAAAIVEEAEKRGFGLTEVEEFRAIPGKGVEGIVNG--------- 94
Query: 538 ELKASLGSVDFITSLCKSEDES-RKIKEAVNGSSYGRGFVHAALSVNEKVTLIHLEDRPR 596
+ + S +I L DES K+K+ G+ V L E +I L DR R
Sbjct: 95 -RRYMVVSPGYIRELGIKTDESVEKLKQ------QGKTVVF-ILKNGEVSGVIALADRIR 146
Query: 597 PGVSDVIAELKDHARLRVMMLTGDHESSAQRVANAVGINEVYCSLKPEDKLNHVKRTSRD 656
P + I++LK ++ MMLTGD+ A+ VA +G+++ + + P +K VK +
Sbjct: 147 PESREAISKLKAIG-IKCMMLTGDNRFVAKWVAEELGLDDYFAEVLPHEKAEKVKEVQQK 205
Query: 657 MGGGLIMVGEGINDAPALAAATVGIVLAQRASATAIAVADVLLLRNNISGVPFCVAKSRQ 716
MVG+G+NDAPALA A VGI + + A+ AD++L+RN+ V V SR+
Sbjct: 206 YVTA--MVGDGVNDAPALAQADVGIAIGA-GTDVAVETADIVLVRNDPRDVAAIVELSRK 262
Query: 717 TTS 719
T S
Sbjct: 263 TYS 265
>pdb|3SKY|A Chain A, 2.1a Crystal Structure Of The Phosphate Bound Atp Binding
Domain Of Archaeoglobus Fulgidus Copb
Length = 274
Score = 112 bits (281), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 92/303 (30%), Positives = 142/303 (46%), Gaps = 39/303 (12%)
Query: 418 LKGGQVLDALASCHTIAFDKTGTLTTGGLMFKAIEPIYGHWIRSKKTHDISCCIPNCEKE 477
++ Q + + FDKTGTLT G + I G + E E
Sbjct: 1 MRDRQAFERAKDLQAVIFDKTGTLTEGRF---GVTDIVG--------------FNHSEDE 43
Query: 478 ALAVAAAMEKGTTHPIGRAVVDHSIGKDLPSVSIDRFEYFPGRGLTATVNGIESGTEGGK 537
L +AA++E + HPI A+V+ + + ++ F PG+G+ VNG
Sbjct: 44 LLQIAASLEARSEHPIAAAIVEEAEKRGFGLTEVEEFRAIPGKGVEGIVNG--------- 94
Query: 538 ELKASLGSVDFITSLCKSEDES-RKIKEAVNGSSYGRGFVHAALSVNEKVTLIHLEDRPR 596
+ + S +I L DES K+K+ G+ V L E +I L DR R
Sbjct: 95 -RRYMVVSPGYIRELGIKTDESVEKLKQ------QGKTVVF-ILKNGEVSGVIALADRIR 146
Query: 597 PGVSDVIAELKDHARLRVMMLTGDHESSAQRVANAVGINEVYCSLKPEDKLNHVKRTSRD 656
P + I++LK ++ MMLTGD+ A+ VA +G+++ + + P +K VK +
Sbjct: 147 PESREAISKLKAIG-IKCMMLTGDNRFVAKWVAEELGLDDYFAEVLPHEKAEKVKEVQQK 205
Query: 657 MGGGLIMVGEGINDAPALAAATVGIVLAQRASATAIAVADVLLLRNNISGVPFCVAKSRQ 716
MVG+G+NDAPALA A VGI + + A+ AD++L+RN+ V V SR+
Sbjct: 206 YVTA--MVGDGVNDAPALAQADVGIAIGA-GTDVAVETADIVLVRNDPRDVAAIVELSRK 262
Query: 717 TTS 719
T S
Sbjct: 263 TYS 265
>pdb|2IYE|A Chain A, Structure Of Catalytic Cpx-atpase Domain Copb-b
pdb|2IYE|C Chain C, Structure Of Catalytic Cpx-atpase Domain Copb-b
Length = 263
Score = 100 bits (248), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 81/306 (26%), Positives = 148/306 (48%), Gaps = 60/306 (19%)
Query: 414 KGILLKGGQVLDALASCHTIAFDKTGTLTTGGLMFKAIEPIYGHWIRSKKTHDISCCIPN 473
KG+++K V + + TI FDKTGTLT G PI +I
Sbjct: 12 KGMIIKNSNVYEKIKEIDTIIFDKTGTLTYG-------TPIVTQFI-------------- 50
Query: 474 CEKEALAVAAAMEKGTTHPIGRAVVDHSIGKDLPSVSIDRFEYFPGRGLTATVNGIESGT 533
+ +LA AA++E ++HPI +A+V ++ + + + + F+ G G+ ++
Sbjct: 51 GDSLSLAYAASVEALSSHPIAKAIVKYAKEQGVKILEVKDFKEISGIGVRGKIS------ 104
Query: 534 EGGKELKASLGSVDFITSLCKSEDESRKIKEAVNGSSYGRGFVHAALSVNEKVTLIHLED 593
D I + K+E+ + I +NG E + ++ D
Sbjct: 105 -------------DKIIEVKKAEN-NNDIAVYING---------------EPIASFNISD 135
Query: 594 RPRPGVSDVIAELKDHARLRVMMLTGDHESSAQRVANAVGINEVYCSLKPEDKLNHVKRT 653
PRP + D + +LK+ L++++L+GD E + ++ + I E Y +L PEDK+ +++
Sbjct: 136 VPRPNLKDYLEKLKNEG-LKIIILSGDKEDKVKELSKELNIQEYYSNLSPEDKVRIIEKL 194
Query: 654 SRDMGGGLIMVGEGINDAPALAAATVGIVLAQRASATAIAVADVLLLRNNISGVPFCVAK 713
++ G ++M+G+G+NDA ALA A V + + + VAD++L+ N+I G + K
Sbjct: 195 KQN-GNKVLMIGDGVNDAAALALADVSVAMGNGVDISK-NVADIILVSNDI-GTLLGLIK 251
Query: 714 SRQTTS 719
+R+ S
Sbjct: 252 NRKRLS 257
>pdb|2YJ3|A Chain A, Conformational Changes In The Catalytic Domain Of The Cpx-
Atpase Copb-B Upon Nucleotide Binding
Length = 263
Score = 98.2 bits (243), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 80/306 (26%), Positives = 148/306 (48%), Gaps = 60/306 (19%)
Query: 414 KGILLKGGQVLDALASCHTIAFDKTGTLTTGGLMFKAIEPIYGHWIRSKKTHDISCCIPN 473
KG+++K V + + TI F+KTGTLT G PI +I
Sbjct: 12 KGMIIKNSNVYEKIKEIDTIIFEKTGTLTYG-------TPIVTQFI-------------- 50
Query: 474 CEKEALAVAAAMEKGTTHPIGRAVVDHSIGKDLPSVSIDRFEYFPGRGLTATVNGIESGT 533
+ +LA AA++E ++HPI +A+V ++ + + + + F+ G G+ ++
Sbjct: 51 GDSLSLAYAASVEALSSHPIAKAIVKYAKEQGVKILEVKDFKEISGIGVRGKIS------ 104
Query: 534 EGGKELKASLGSVDFITSLCKSEDESRKIKEAVNGSSYGRGFVHAALSVNEKVTLIHLED 593
D I + K+E+ + I +NG E + ++ D
Sbjct: 105 -------------DKIIEVKKAEN-NNDIAVYING---------------EPIASFNISD 135
Query: 594 RPRPGVSDVIAELKDHARLRVMMLTGDHESSAQRVANAVGINEVYCSLKPEDKLNHVKRT 653
PRP + D + +LK+ L++++L+GD E + ++ + I E Y +L PEDK+ +++
Sbjct: 136 VPRPNLKDYLEKLKNEG-LKIIILSGDKEDKVKELSKELNIQEYYSNLSPEDKVRIIEKL 194
Query: 654 SRDMGGGLIMVGEGINDAPALAAATVGIVLAQRASATAIAVADVLLLRNNISGVPFCVAK 713
++ G ++M+G+G+NDA ALA A V + + + VAD++L+ N+I G + K
Sbjct: 195 KQN-GNKVLMIGDGVNDAAALALADVSVAMGNGVDISK-NVADIILVSNDI-GTLLGLIK 251
Query: 714 SRQTTS 719
+R+ S
Sbjct: 252 NRKRLS 257
>pdb|2YJ4|A Chain A, Conformational Changes In The Catalytic Domain Of The Cpx-
Atpase Copb-B Upon Nucleotide Binding
pdb|2YJ4|B Chain B, Conformational Changes In The Catalytic Domain Of The Cpx-
Atpase Copb-B Upon Nucleotide Binding
pdb|2YJ5|A Chain A, Conformational Changes In The Catalytic Domain Of The Cpx-
Atpase Copb-B Upon Nucleotide Binding
pdb|2YJ5|B Chain B, Conformational Changes In The Catalytic Domain Of The Cpx-
Atpase Copb-B Upon Nucleotide Binding
pdb|2YJ6|A Chain A, Conformational Changes In The Catalytic Domain Of The
Cpx-Atpase Copb-B Upon Nucleotide Binding
pdb|2YJ6|B Chain B, Conformational Changes In The Catalytic Domain Of The
Cpx-Atpase Copb-B Upon Nucleotide Binding
Length = 263
Score = 98.2 bits (243), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 80/306 (26%), Positives = 148/306 (48%), Gaps = 60/306 (19%)
Query: 414 KGILLKGGQVLDALASCHTIAFDKTGTLTTGGLMFKAIEPIYGHWIRSKKTHDISCCIPN 473
KG+++K V + + TI F+KTGTLT G PI +I
Sbjct: 12 KGMIIKNSNVYEKIKEIDTIIFNKTGTLTYG-------TPIVTQFI-------------- 50
Query: 474 CEKEALAVAAAMEKGTTHPIGRAVVDHSIGKDLPSVSIDRFEYFPGRGLTATVNGIESGT 533
+ +LA AA++E ++HPI +A+V ++ + + + + F+ G G+ ++
Sbjct: 51 GDSLSLAYAASVEALSSHPIAKAIVKYAKEQGVKILEVKDFKEISGIGVRGKIS------ 104
Query: 534 EGGKELKASLGSVDFITSLCKSEDESRKIKEAVNGSSYGRGFVHAALSVNEKVTLIHLED 593
D I + K+E+ + I +NG E + ++ D
Sbjct: 105 -------------DKIIEVKKAEN-NNDIAVYING---------------EPIASFNISD 135
Query: 594 RPRPGVSDVIAELKDHARLRVMMLTGDHESSAQRVANAVGINEVYCSLKPEDKLNHVKRT 653
PRP + D + +LK+ L++++L+GD E + ++ + I E Y +L PEDK+ +++
Sbjct: 136 VPRPNLKDYLEKLKNEG-LKIIILSGDKEDKVKELSKELNIQEYYSNLSPEDKVRIIEKL 194
Query: 654 SRDMGGGLIMVGEGINDAPALAAATVGIVLAQRASATAIAVADVLLLRNNISGVPFCVAK 713
++ G ++M+G+G+NDA ALA A V + + + VAD++L+ N+I G + K
Sbjct: 195 KQN-GNKVLMIGDGVNDAAALALADVSVAMGNGVDISK-NVADIILVSNDI-GTLLGLIK 251
Query: 714 SRQTTS 719
+R+ S
Sbjct: 252 NRKRLS 257
>pdb|3A1C|A Chain A, Crystal Structure Of The P- And N-Domains Of Copa, A
Copper- Transporting P-Type Atpase, Bound With Amppcp-Mg
pdb|3A1C|B Chain B, Crystal Structure Of The P- And N-Domains Of Copa, A
Copper- Transporting P-Type Atpase, Bound With Amppcp-Mg
pdb|3A1D|A Chain A, Crystal Structure Of The P- And N-domains Of Copa, A
Copper- Transporting P-type Atpase, Bound With Adp-mg
pdb|3A1D|B Chain B, Crystal Structure Of The P- And N-domains Of Copa, A
Copper- Transporting P-type Atpase, Bound With Adp-mg
Length = 287
Score = 95.1 bits (235), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 93/315 (29%), Positives = 151/315 (47%), Gaps = 45/315 (14%)
Query: 412 ARKGILLKGGQVLDALASCHTIAFDKTGTLTTGGLMFKAIEPIYGHWIRSKKTHDISCCI 471
A GIL+K L+ + FDKTGTLT G + P+ G
Sbjct: 14 AELGILIKNADALEVAEKVTAVIFDKTGTLTKGKPEVTDLVPLNGD-------------- 59
Query: 472 PNCEKEALAVAAAMEKGTTHPIGRAVVDHSIGKDLPSVSIDRFEYFPGRGLTATVNGIES 531
E+E L +AA E+ + HPI A+V ++ + ++ E G G+ A +GI
Sbjct: 60 ---ERELLRLAAIAERRSEHPIAEAIVKKALEHGIELGEPEKVEVIAGEGVVA--DGI-- 112
Query: 532 GTEGGKELKASLG---SVDFITSLCKSEDESRKIKEAVNGSSYGRGFVHAALSVNEKVTL 588
G K L G S + +L K E R+ K AV + GR V ++V++
Sbjct: 113 -LVGNKRLMEDFGVAVSNEVELALEKLE---REAKTAVIVARNGR--VEGIIAVSD---- 162
Query: 589 IHLEDRPRPGVSDVIAELKDHARLRVMMLTGDHESSAQRVANAVGINEVYCSLKPEDKLN 648
L++ +P V ELK ++V M+TGD+ SA+ ++ + ++ V + P K
Sbjct: 163 -TLKESAKPAVQ----ELKRMG-IKVGMITGDNWRSAEAISRELNLDLVIAEVLPHQKSE 216
Query: 649 HVKR-TSRDMGGGLIMVGEGINDAPALAAATVGIVLAQRASATAIAVADVLLLRNNISGV 707
VK+ ++++ + VG+GINDAPALA A +GI + S A+ D++L+R+++ V
Sbjct: 217 EVKKLQAKEV---VAFVGDGINDAPALAQADLGIAVGS-GSDVAVESGDIVLIRDDLRDV 272
Query: 708 PFCVAKSRQTTSLVK 722
+ SR+T S +K
Sbjct: 273 VAAIQLSRKTMSKIK 287
>pdb|3A1E|A Chain A, Crystal Structure Of The P- And N-Domains Of His462gln
Mutant Copa, A Copper-Transporting P-Type Atpase, Bound
With Amppcp-Mg
pdb|3A1E|B Chain B, Crystal Structure Of The P- And N-Domains Of His462gln
Mutant Copa, A Copper-Transporting P-Type Atpase, Bound
With Amppcp-Mg
Length = 287
Score = 92.4 bits (228), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 92/315 (29%), Positives = 150/315 (47%), Gaps = 45/315 (14%)
Query: 412 ARKGILLKGGQVLDALASCHTIAFDKTGTLTTGGLMFKAIEPIYGHWIRSKKTHDISCCI 471
A GIL+K L+ + FDKTGTLT G + P+ G
Sbjct: 14 AELGILIKNADALEVAEKVTAVIFDKTGTLTKGKPEVTDLVPLNGD-------------- 59
Query: 472 PNCEKEALAVAAAMEKGTTHPIGRAVVDHSIGKDLPSVSIDRFEYFPGRGLTATVNGIES 531
E+E L +AA E+ + PI A+V ++ + ++ E G G+ A +GI
Sbjct: 60 ---ERELLRLAAIAERRSEQPIAEAIVKKALEHGIELGEPEKVEVIAGEGVVA--DGI-- 112
Query: 532 GTEGGKELKASLG---SVDFITSLCKSEDESRKIKEAVNGSSYGRGFVHAALSVNEKVTL 588
G K L G S + +L K E R+ K AV + GR V ++V++
Sbjct: 113 -LVGNKRLMEDFGVAVSNEVELALEKLE---REAKTAVIVARNGR--VEGIIAVSD---- 162
Query: 589 IHLEDRPRPGVSDVIAELKDHARLRVMMLTGDHESSAQRVANAVGINEVYCSLKPEDKLN 648
L++ +P V ELK ++V M+TGD+ SA+ ++ + ++ V + P K
Sbjct: 163 -TLKESAKPAVQ----ELKRMG-IKVGMITGDNWRSAEAISRELNLDLVIAEVLPHQKSE 216
Query: 649 HVKR-TSRDMGGGLIMVGEGINDAPALAAATVGIVLAQRASATAIAVADVLLLRNNISGV 707
VK+ ++++ + VG+GINDAPALA A +GI + S A+ D++L+R+++ V
Sbjct: 217 EVKKLQAKEV---VAFVGDGINDAPALAQADLGIAVGS-GSDVAVESGDIVLIRDDLRDV 272
Query: 708 PFCVAKSRQTTSLVK 722
+ SR+T S +K
Sbjct: 273 VAAIQLSRKTMSKIK 287
>pdb|2B8E|A Chain A, Copa Atp Binding Domain
pdb|2B8E|B Chain B, Copa Atp Binding Domain
pdb|2B8E|C Chain C, Copa Atp Binding Domain
Length = 273
Score = 85.5 bits (210), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 87/305 (28%), Positives = 143/305 (46%), Gaps = 45/305 (14%)
Query: 419 KGGQVLDALASCHTIAFDKTGTLTTGGLMFKAIEPIYGHWIRSKKTHDISCCIPNCEKEA 478
K L+ + FDKTGTLT G + P+ G E+E
Sbjct: 1 KNADALEVAEKVTAVIFDKTGTLTKGKPEVTDLVPLNGD-----------------EREL 43
Query: 479 LAVAAAMEKGTTHPIGRAVVDHSIGKDLPSVSIDRFEYFPGRGLTATVNGIESGTEGGKE 538
L +AA E+ + HPI A+V ++ + ++ E G G+ A +GI G K
Sbjct: 44 LRLAAIAERRSEHPIAEAIVKKALEHGIELGEPEKVEVIAGEGVVA--DGI---LVGNKR 98
Query: 539 LKASLG---SVDFITSLCKSEDESRKIKEAVNGSSYGRGFVHAALSVNEKVTLIHLEDRP 595
L G S + +L K E R+ K AV + GR V ++V++ L++
Sbjct: 99 LXEDFGVAVSNEVELALEKLE---REAKTAVIVARNGR--VEGIIAVSDT-----LKESA 148
Query: 596 RPGVSDVIAELKDHARLRVMMLTGDHESSAQRVANAVGINEVYCSLKPEDKLNHVKR-TS 654
+P V ELK ++V +TGD+ SA+ ++ + ++ V + P K VK+ +
Sbjct: 149 KPAVQ----ELK-RXGIKVGXITGDNWRSAEAISRELNLDLVIAEVLPHQKSEEVKKLQA 203
Query: 655 RDMGGGLIMVGEGINDAPALAAATVGIVLAQRASATAIAVADVLLLRNNISGVPFCVAKS 714
+++ + VG+GINDAPALA A +GI + S A+ D++L+R+++ V + S
Sbjct: 204 KEV---VAFVGDGINDAPALAQADLGIAVGS-GSDVAVESGDIVLIRDDLRDVVAAIQLS 259
Query: 715 RQTTS 719
R+T S
Sbjct: 260 RKTXS 264
>pdb|2HC8|A Chain A, Structure Of The A. Fulgidus Copa A-Domain
pdb|2VOY|F Chain F, Cryoem Model Of Copa, The Copper Transporting Atpase From
Archaeoglobus Fulgidus
Length = 113
Score = 55.8 bits (133), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 31/88 (35%), Positives = 51/88 (57%)
Query: 244 SVPVHDVEVGSYILVGAGEAVPVDCEVYQGTATITIEHLTGEVKPLEAKVGDRIPGGARN 303
+VPV +V VG ++V GE +PVD V +G + + ++GE P+ GD + G N
Sbjct: 24 AVPVEEVAVGDIVIVRPGEKIPVDGVVVEGESYVDESMISGEPVPVLKSKGDEVFGATIN 83
Query: 304 LDGRMILKATKTWNESTLNRIVQLTEEA 331
G + ++AT+ E+ L +IV+L E+A
Sbjct: 84 NTGVLKIRATRVGGETLLAQIVKLVEDA 111
>pdb|2VOY|I Chain I, Cryoem Model Of Copa, The Copper Transporting Atpase From
Archaeoglobus Fulgidus
Length = 128
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 44/139 (31%), Positives = 73/139 (52%), Gaps = 27/139 (19%)
Query: 579 ALSVNEKVT---------LIHLEDRPRPGVSDVIAELKDHARLRVMMLTGDHESSAQRVA 629
AL V EKVT L L++ +P V ELK ++V +TGD+ SA+ ++
Sbjct: 2 ALEVAEKVTAVIFDKTGTLTKLKESAKPAVQ----ELK-RXGIKVGXITGDNWRSAEAIS 56
Query: 630 NAVGINEVYCSLKPEDKLNHVKR-TSRDMGGGLIMVGEGINDAPALAAATVGIVLAQRAS 688
+ ++ V + P K VK+ ++++ + VG+GINDAPALA A +GI
Sbjct: 57 RELNLDLVIAEVLPHQKSEEVKKLQAKEV---VAFVGDGINDAPALAQADLGI------- 106
Query: 689 ATAIAVADVLLLRNNISGV 707
A+ D++L+R+++ V
Sbjct: 107 --AVGSGDIVLIRDDLRDV 123
>pdb|2ZXE|A Chain A, Crystal Structure Of The Sodium - Potassium Pump In The
E2.2k+.Pi State
pdb|3A3Y|A Chain A, Crystal Structure Of The Sodium-potassium Pump With Bound
Potassium And Ouabain
Length = 1028
Score = 54.3 bits (129), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 50/212 (23%), Positives = 83/212 (39%), Gaps = 59/212 (27%)
Query: 586 VTLIHLEDRPRPGVSDVIAELKDHARLRVMMLTGDHESSAQRVANAVGI----NE----- 636
V L+ + D PR V D + + + A ++V+M+TGDH +A+ +A VGI NE
Sbjct: 591 VGLMAMIDPPRAAVPDAVGKCR-SAGIKVIMVTGDHPITAKAIAKGVGIISEGNETIEDI 649
Query: 637 --------------------------------------------VYCSLKPEDKLNHVKR 652
V+ P+ KL V+
Sbjct: 650 AARLNIPIGQVNPRDAKACVVHGSDLKDLSTEVLDDILHYHTEIVFARTSPQQKLIIVEG 709
Query: 653 TSRDMGGGLIMVGEGINDAPALAAATVGIVLAQRASATAIAVADVLLLRNNISGVPFCVA 712
R G + + G+G+ND+PAL A +G+ + S + AD++LL +N + + V
Sbjct: 710 CQR-QGAIVAVTGDGVNDSPALKKADIGVAMGISGSDVSKQAADMILLDDNFASIVTGVE 768
Query: 713 KSRQTTSLVKQNVXXXXXXXXXXXXPSVLGFL 744
+ R L+ N+ P + FL
Sbjct: 769 EGR----LIFDNLKKSIAYTLTSNIPEITPFL 796
Score = 32.0 bits (71), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 20/31 (64%)
Query: 412 ARKGILLKGGQVLDALASCHTIAFDKTGTLT 442
ARK L+K + ++ L S TI DKTGTLT
Sbjct: 357 ARKNCLVKNLEAVETLGSTSTICSDKTGTLT 387
>pdb|2KIJ|A Chain A, Solution Structure Of The Actuator Domain Of The Copper-
Transporting Atpase Atp7a
Length = 124
Score = 53.1 bits (126), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 32/92 (34%), Positives = 50/92 (54%)
Query: 241 AYRSVPVHDVEVGSYILVGAGEAVPVDCEVYQGTATITIEHLTGEVKPLEAKVGDRIPGG 300
+ V V V+ G I V G PVD V +G + + +TGE P+ K G + G
Sbjct: 33 SEEQVDVELVQRGDIIKVVPGGKFPVDGRVIEGHSMVDESLITGEAMPVAKKPGSTVIAG 92
Query: 301 ARNLDGRMILKATKTWNESTLNRIVQLTEEAQ 332
+ N +G +++ AT ++TL++IV+L EEAQ
Sbjct: 93 SINQNGSLLICATHVGADTTLSQIVKLVEEAQ 124
>pdb|3IXZ|A Chain A, Pig Gastric H+K+-Atpase Complexed With Aluminium Fluoride
pdb|2XZB|A Chain A, Pig Gastric H,K-Atpase With Bound Bef And Sch28080
pdb|2YN9|A Chain A, Cryo-em Structure Of Gastric H+,k+-atpase With Bound
Rubidium
Length = 1034
Score = 52.8 bits (125), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 46/191 (24%), Positives = 81/191 (42%), Gaps = 55/191 (28%)
Query: 588 LIHLEDRPRPGVSDVIAELKDHARLRVMMLTGDHESSAQRVANAVG-INE---------- 636
L+ + D PR V D + + + A +RV+M+TGDH +A+ +A +VG I+E
Sbjct: 598 LVSMIDPPRATVPDAVLKCRT-AGIRVIMVTGDHPITAKAIAASVGIISEGSETVEDIAA 656
Query: 637 ------------------------------------------VYCSLKPEDKLNHVKRTS 654
V+ P+ KL V+
Sbjct: 657 RLRVPVDQVNRKDARACVINGMQLKDMDPSELVEALRTHPEMVFARTSPQQKLVIVESCQ 716
Query: 655 RDMGGGLIMVGEGINDAPALAAATVGIVLAQRASATAIAVADVLLLRNNISGVPFCVAKS 714
R +G + + G+G+ND+PAL A +G+ + S A AD++LL +N + + V +
Sbjct: 717 R-LGAIVAVTGDGVNDSPALKKADIGVAMGIAGSDAAKNAADMILLDDNFASIVTGVEQG 775
Query: 715 RQTTSLVKQNV 725
R +K+++
Sbjct: 776 RLIFDNLKKSI 786
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 48/203 (23%), Positives = 77/203 (37%), Gaps = 19/203 (9%)
Query: 252 VGSYILVGAGEAVPVDCEVYQGTA-TITIEHLTGEVKPL--EAKVGDRIPGGARNLD--G 306
VG + + G+ VP D + Q + LTGE +P + P RN+
Sbjct: 197 VGDLVEMKGGDRVPADIRILQAQGRKVDNSSLTGESEPQTRSPECTHESPLETRNIAFFS 256
Query: 307 RMILKAT------KTWNESTLNRIVQLTEEAQLNKPKLQRWLDEFGEQYSKXXXXLSLAI 360
M L+ T T + + + RI L + K + ++ F + + LAI
Sbjct: 257 TMCLEGTAQGLVVNTGDRTIIGRIASLASGVENEKTPIAIEIEHFVDIIA------GLAI 310
Query: 361 ALIGPFLFKWSFIGTSVCRGSVYRALGLMVAASPCXXXXXXXXXXXXISS-CARKGILLK 419
F IG + R V+ + ++VA P + A K ++K
Sbjct: 311 LFGATFFIVAMCIGYTFLRAMVF-FMAIVVAYVPEGLLATVTVCLSLTAKRLASKNCVVK 369
Query: 420 GGQVLDALASCHTIAFDKTGTLT 442
+ ++ L S I DKTGTLT
Sbjct: 370 NLEAVETLGSTSVICSDKTGTLT 392
>pdb|3N23|A Chain A, Crystal Structure Of The High Affinity Complex Between
Ouabain And The E2p Form Of The Sodium-Potassium Pump
pdb|3N23|C Chain C, Crystal Structure Of The High Affinity Complex Between
Ouabain And The E2p Form Of The Sodium-Potassium Pump
pdb|3N2F|A Chain A, Crystal Structure Of The Sodium-Potassium Pump
pdb|3N2F|C Chain C, Crystal Structure Of The Sodium-Potassium Pump
Length = 992
Score = 52.4 bits (124), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 50/212 (23%), Positives = 82/212 (38%), Gaps = 59/212 (27%)
Query: 586 VTLIHLEDRPRPGVSDVIAELKDHARLRVMMLTGDHESSAQRVANAVGI----NE----- 636
V LI + D PR V D + + + A ++V+M+TGDH +A+ +A VGI NE
Sbjct: 555 VGLISMIDPPRAAVPDAVGKCRS-AGIKVIMVTGDHPITAKAIAKGVGIISEGNETVEDI 613
Query: 637 --------------------------------------------VYCSLKPEDKLNHVKR 652
V+ P+ KL V+
Sbjct: 614 AARLNIPVSQVNPRDAKACVVHGSDLKDMTSEQLDDILKYHTEIVFARTSPQQKLIIVEG 673
Query: 653 TSRDMGGGLIMVGEGINDAPALAAATVGIVLAQRASATAIAVADVLLLRNNISGVPFCVA 712
R G + + G+G+ND+PA A +G+ + S + AD++LL +N + + V
Sbjct: 674 CQRQ-GAIVAVTGDGVNDSPASKKADIGVAMGIAGSDVSKQAADMILLDDNFASIVTGVE 732
Query: 713 KSRQTTSLVKQNVXXXXXXXXXXXXPSVLGFL 744
+ R L+ N+ P + FL
Sbjct: 733 EGR----LIFDNLKKSIAYTLTSNIPEITPFL 760
Score = 30.8 bits (68), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 46/211 (21%), Positives = 77/211 (36%), Gaps = 19/211 (9%)
Query: 244 SVPVHDVEVGSYILVGAGEAVPVDCEVYQGTAT-ITIEHLTGEVKPL--EAKVGDRIPGG 300
S+ +V VG + V G+ +P D + + LTGE +P + P
Sbjct: 148 SINAEEVVVGDLVEVKGGDRIPADLRIISANGCKVDNSSLTGESEPQTRSPDFTNENPLE 207
Query: 301 ARNL--------DGRMILKATKTWNESTLNRIVQLTEEAQLNKPKLQRWLDEFGEQYSKX 352
RN+ +G T + + + RI L + + + ++ F
Sbjct: 208 TRNIAFFSTNCVEGTARGIVVYTGDRTVMGRIATLASGLEGGQTPIAAEIEHF------- 260
Query: 353 XXXLSLAIALIGPFLFKWSFIGTSVCRGSVYRALGLMVAASPCXXXXXXXXXXXXISS-C 411
++ +G F S I +V +G++VA P +
Sbjct: 261 IHIITGVAVFLGVSFFILSLILEYTWLEAVIFLIGIIVANVPEGLLATVTVCLTLTAKRM 320
Query: 412 ARKGILLKGGQVLDALASCHTIAFDKTGTLT 442
ARK L+K + ++ L S TI KTGTLT
Sbjct: 321 ARKNCLVKNLEAVETLGSTSTICSXKTGTLT 351
>pdb|3B8E|A Chain A, Crystal Structure Of The Sodium-Potassium Pump
pdb|3B8E|C Chain C, Crystal Structure Of The Sodium-Potassium Pump
pdb|3KDP|A Chain A, Crystal Structure Of The Sodium-potassium Pump
pdb|3KDP|C Chain C, Crystal Structure Of The Sodium-potassium Pump
Length = 998
Score = 52.4 bits (124), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 50/212 (23%), Positives = 82/212 (38%), Gaps = 59/212 (27%)
Query: 586 VTLIHLEDRPRPGVSDVIAELKDHARLRVMMLTGDHESSAQRVANAVGI----NE----- 636
V LI + D PR V D + + + A ++V+M+TGDH +A+ +A VGI NE
Sbjct: 561 VGLISMIDPPRAAVPDAVGKCRS-AGIKVIMVTGDHPITAKAIAKGVGIISEGNETVEDI 619
Query: 637 --------------------------------------------VYCSLKPEDKLNHVKR 652
V+ P+ KL V+
Sbjct: 620 AARLNIPVSQVNPRDAKACVVHGSDLKDMTSEQLDDILKYHTEIVFARTSPQQKLIIVEG 679
Query: 653 TSRDMGGGLIMVGEGINDAPALAAATVGIVLAQRASATAIAVADVLLLRNNISGVPFCVA 712
R G + + G+G+ND+PA A +G+ + S + AD++LL +N + + V
Sbjct: 680 CQRQ-GAIVAVTGDGVNDSPASKKADIGVAMGIAGSDVSKQAADMILLDDNFASIVTGVE 738
Query: 713 KSRQTTSLVKQNVXXXXXXXXXXXXPSVLGFL 744
+ R L+ N+ P + FL
Sbjct: 739 EGR----LIFDNLKKSIAYTLTSNIPEITPFL 766
Score = 33.9 bits (76), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 47/211 (22%), Positives = 78/211 (36%), Gaps = 19/211 (9%)
Query: 244 SVPVHDVEVGSYILVGAGEAVPVDCEVYQGTAT-ITIEHLTGEVKPL--EAKVGDRIPGG 300
S+ +V VG + V G+ +P D + + LTGE +P + P
Sbjct: 154 SINAEEVVVGDLVEVKGGDRIPADLRIISANGCKVDNSSLTGESEPQTRSPDFTNENPLE 213
Query: 301 ARNL--------DGRMILKATKTWNESTLNRIVQLTEEAQLNKPKLQRWLDEFGEQYSKX 352
RN+ +G T + + + RI L + + + ++ F
Sbjct: 214 TRNIAFFSTNCVEGTARGIVVYTGDRTVMGRIATLASGLEGGQTPIAAEIEHF------- 266
Query: 353 XXXLSLAIALIGPFLFKWSFIGTSVCRGSVYRALGLMVAASPCXXXXXXXXXXXXISS-C 411
++ +G F S I +V +G++VA P +
Sbjct: 267 IHIITGVAVFLGVSFFILSLILEYTWLEAVIFLIGIIVANVPEGLLATVTVCLTLTAKRM 326
Query: 412 ARKGILLKGGQVLDALASCHTIAFDKTGTLT 442
ARK L+K + ++ L S TI DKTGTLT
Sbjct: 327 ARKNCLVKNLEAVETLGSTSTICSDKTGTLT 357
>pdb|2DQS|A Chain A, Crystal Structure Of The Calcium Pump With Amppcp In The
Absence Of Calcium
pdb|2EAR|A Chain A, P21 Crystal Of The Sr Ca2+-Atpase With Bound Tg
pdb|2EAT|A Chain A, Crystal Structure Of The Sr Ca2+-Atpase With Bound Cpa And
Tg
pdb|2ZBF|A Chain A, Calcium Pump Crystal Structure With Bound Bef3 And Tg In
The Absence Of Calcium
pdb|2ZBG|A Chain A, Calcium Pump Crystal Structure With Bound Alf4 And Tg In
The Absence Of Calcium
pdb|3AR2|A Chain A, Calcium Pump Crystal Structure With Bound Amppcp And Ca2+
pdb|3AR3|A Chain A, Calcium Pump Crystal Structure With Bound Adp And Tg
pdb|3AR4|A Chain A, Calcium Pump Crystal Structure With Bound Atp And Tg In
The Absence Of Ca2+
pdb|3AR5|A Chain A, Calcium Pump Crystal Structure With Bound Tnp-Amp And Tg
pdb|3AR6|A Chain A, Calcium Pump Crystal Structure With Bound Tnp-Adp And Tg
In The Absence Of Calcium
pdb|3AR7|A Chain A, Calcium Pump Crystal Structure With Bound Tnp-Atp And Tg
In The Absence Of Ca2+
pdb|3AR8|A Chain A, Calcium Pump Crystal Structure With Bound Alf4, Tnp-Amp
And Tg
pdb|3AR9|A Chain A, Calcium Pump Crystal Structure With Bound Bef3, Tnp-Amp
And Tg In The Absence Of Calcium
pdb|2ZBE|A Chain A, Calcium Pump Crystal Structure With Bound Bef3 In The
Absence Of Calcium And Tg
pdb|2ZBE|B Chain B, Calcium Pump Crystal Structure With Bound Bef3 In The
Absence Of Calcium And Tg
pdb|2ZBD|A Chain A, Crystal Structure Of The Sr Calcium Pump With Bound
Aluminium Fluoride, Adp And Calcium
Length = 995
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 55/228 (24%), Positives = 89/228 (39%), Gaps = 28/228 (12%)
Query: 243 RSVPVHDVEVGSYILVGAGEAVPVDCEVYQ-GTATITIEH--LTGE----VKPLEAKVGD 295
+ + D+ G + V G+ VP D + + T+ ++ LTGE +K E
Sbjct: 139 QRIKARDIVPGDIVEVAVGDKVPADIRILSIKSTTLRVDQSILTGESVSVIKHTEPVPDP 198
Query: 296 R---------IPGGARNLDGRMILKATKTWNESTLNRIVQLTEEAQLNKPKLQRWLDEFG 346
R + G G+ + T + + +I + +K LQ+ LDEFG
Sbjct: 199 RAVNQDKKNMLFSGTNIAAGKALGIVATTGVSTEIGKIRDQMAATEQDKTPLQQKLDEFG 258
Query: 347 EQYSKXXXXLSLAIALIGPFLFKWSFIGTSVCRGSVYRALGLMVAASPCXXXXXXXXXXX 406
EQ SK + +A+ LI F G S RG++Y A
Sbjct: 259 EQLSKVISLICVAVWLINIGHFNDPVHGGSWIRGAIY----YFKIAVALAVAAIPEGLPA 314
Query: 407 XISSC--------ARKGILLKGGQVLDALASCHTIAFDKTGTLTTGGL 446
I++C A+K +++ ++ L I DKTGTLTT +
Sbjct: 315 VITTCLALGTRRMAKKNAIVRSLPSVETLGCTSVICSDKTGTLTTNQM 362
Score = 44.3 bits (103), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 42/169 (24%), Positives = 74/169 (43%), Gaps = 34/169 (20%)
Query: 586 VTLIHLEDRPRPGVSDVIAELKDHARLRVMMLTGDHESSAQRVANAVGI---NE------ 636
V ++ + D PR V I +D A +RV+M+TGD++ +A + +GI NE
Sbjct: 595 VGVVGMLDPPRKEVMGSIQLCRD-AGIRVIMITGDNKGTAIAICRRIGIFGENEEVADRA 653
Query: 637 ----------------------VYCSLKPEDKLNHVKRTSRDMGGGLIMVGEGINDAPAL 674
+ ++P K + + + M G+G+NDAPAL
Sbjct: 654 YTGREFDDLPLAEQREACRRACCFARVEPSHK-SKIVEYLQSYDEITAMTGDGVNDAPAL 712
Query: 675 AAATVGIVLAQRASATAIAVADVLLLRNNISGVPFCVAKSRQTTSLVKQ 723
A +GI + +A A ++++L +N S + V + R + +KQ
Sbjct: 713 KKAEIGIAMGS-GTAVAKTASEMVLADDNFSTIVAAVEEGRAIYNNMKQ 760
>pdb|1KJU|A Chain A, Ca2+-Atpase In The E2 State
pdb|1IWO|A Chain A, Crystal Structure Of The Sr Ca2+-Atpase In The Absence Of
Ca2+
pdb|1IWO|B Chain B, Crystal Structure Of The Sr Ca2+-Atpase In The Absence Of
Ca2+
pdb|1SU4|A Chain A, Crystal Structure Of Calcium Atpase With Two Bound Calcium
Ions
pdb|1T5S|A Chain A, Structure Of The (sr)ca2+-atpase Ca2-e1-amppcp Form
pdb|1T5T|A Chain A, Structure Of The (Sr)ca2+-Atpase Ca2-E1-Adp:alf4- Form
pdb|1VFP|A Chain A, Crystal Structure Of The Sr Ca2+-Atpase With Bound Amppcp
pdb|1VFP|B Chain B, Crystal Structure Of The Sr Ca2+-Atpase With Bound Amppcp
pdb|1WPG|A Chain A, Crystal Structure Of The Sr Ca2+-Atpase With Mgf4
pdb|1WPG|B Chain B, Crystal Structure Of The Sr Ca2+-Atpase With Mgf4
pdb|1WPG|C Chain C, Crystal Structure Of The Sr Ca2+-Atpase With Mgf4
pdb|1WPG|D Chain D, Crystal Structure Of The Sr Ca2+-Atpase With Mgf4
pdb|1XP5|A Chain A, Structure Of The (Sr)ca2+-Atpase E2-Alf4- Form
pdb|2AGV|A Chain A, Crystal Structure Of The Sr Ca2+-atpase With Bhq And Tg
pdb|2AGV|B Chain B, Crystal Structure Of The Sr Ca2+-atpase With Bhq And Tg
pdb|2BY4|A Chain A, Sr Ca(2+)-Atpase In The Hne2 State Complexed With The
Thapsigargin Derivative Boc-12adt.
pdb|2C88|A Chain A, Crystal Structure Of (Sr) Calcium-Atpase E2(Tg):amppcp
Form
pdb|2C8K|A Chain A, Crystal Structure Of (Sr) Calcium-Atpase E2(Tg) With
Partially Occupied Amppcp Site
pdb|2C8L|A Chain A, Crystal Structure Of (Sr) Calcium-Atpase E2(Tg) Form
pdb|2C9M|A Chain A, Structure Of (Sr) Calcium-Atpase In The Ca2e1 State Solved
In A P1 Crystal Form.
pdb|2C9M|B Chain B, Structure Of (Sr) Calcium-Atpase In The Ca2e1 State Solved
In A P1 Crystal Form.
pdb|2O9J|A Chain A, Crystal Structure Of Calcium Atpase With Bound Magnesium
Fluoride And Cyclopiazonic Acid
pdb|2OA0|A Chain A, Crystal Structure Of Calcium Atpase With Bound Adp And
Cyclopiazonic Acid
pdb|3B9B|A Chain A, Structure Of The E2 Beryllium Fluoride Complex Of The
Serca Ca2+-Atpase
pdb|3B9R|A Chain A, Serca Ca2+-Atpase E2 Aluminium Fluoride Complex Without
Thapsigargin
pdb|3B9R|B Chain B, Serca Ca2+-Atpase E2 Aluminium Fluoride Complex Without
Thapsigargin
pdb|2EAS|A Chain A, Crystal Structure Of The Sr Ca2+-Atpase With Bound Cpa
pdb|2EAU|A Chain A, Crystal Structure Of The Sr Ca2+-Atpase With Bound Cpa In
The Presence Of Curcumin
pdb|3FGO|A Chain A, Crystal Structure Of The E2 Magnesium Fluoride Complex Of
The (Sr) Ca2+-Atpase With Bound Cpa And Amppcp
pdb|3FGO|B Chain B, Crystal Structure Of The E2 Magnesium Fluoride Complex Of
The (Sr) Ca2+-Atpase With Bound Cpa And Amppcp
pdb|3FPB|A Chain A, The Structure Of Sarcoplasmic Reticulum Ca2+-Atpase Bound
To Cyclopiazonic Acid With Atp
pdb|3FPS|A Chain A, The Structure Of Sarcoplasmic Reticulum Ca2+-Atpase Bound
To Cyclopiazonic And Adp
pdb|3NAL|A Chain A, Sr Ca(2+)-Atpase In The Hne2 State Complexed With The
Thapsigargin Derivative Dtb
pdb|3NAM|A Chain A, Sr Ca(2+)-Atpase In The Hne2 State Complexed With The
Thapsigargin Derivative Dotg
pdb|3NAN|A Chain A, Sr Ca(2+)-Atpase In The Hne2 State Complexed With A
Thapsigargin Derivative Boc-(Phi)tg
pdb|3N5K|A Chain A, Structure Of The (sr)ca2+-atpase E2-alf4- Form
pdb|3N5K|B Chain B, Structure Of The (sr)ca2+-atpase E2-alf4- Form
pdb|3N8G|A Chain A, Structure Of The (sr)ca2+-atpase Ca2-e1-caamppcp Form
pdb|2YFY|A Chain A, Serca In The Hne2 State Complexed With Debutanoyl
Thapsigargin
Length = 994
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 55/228 (24%), Positives = 89/228 (39%), Gaps = 28/228 (12%)
Query: 243 RSVPVHDVEVGSYILVGAGEAVPVDCEVYQ-GTATITIEH--LTGE----VKPLEAKVGD 295
+ + D+ G + V G+ VP D + + T+ ++ LTGE +K E
Sbjct: 138 QRIKARDIVPGDIVEVAVGDKVPADIRILSIKSTTLRVDQSILTGESVSVIKHTEPVPDP 197
Query: 296 R---------IPGGARNLDGRMILKATKTWNESTLNRIVQLTEEAQLNKPKLQRWLDEFG 346
R + G G+ + T + + +I + +K LQ+ LDEFG
Sbjct: 198 RAVNQDKKNMLFSGTNIAAGKALGIVATTGVSTEIGKIRDQMAATEQDKTPLQQKLDEFG 257
Query: 347 EQYSKXXXXLSLAIALIGPFLFKWSFIGTSVCRGSVYRALGLMVAASPCXXXXXXXXXXX 406
EQ SK + +A+ LI F G S RG++Y A
Sbjct: 258 EQLSKVISLICVAVWLINIGHFNDPVHGGSWIRGAIY----YFKIAVALAVAAIPEGLPA 313
Query: 407 XISSC--------ARKGILLKGGQVLDALASCHTIAFDKTGTLTTGGL 446
I++C A+K +++ ++ L I DKTGTLTT +
Sbjct: 314 VITTCLALGTRRMAKKNAIVRSLPSVETLGCTSVICSDKTGTLTTNQM 361
Score = 44.3 bits (103), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 42/169 (24%), Positives = 74/169 (43%), Gaps = 34/169 (20%)
Query: 586 VTLIHLEDRPRPGVSDVIAELKDHARLRVMMLTGDHESSAQRVANAVGI---NE------ 636
V ++ + D PR V I +D A +RV+M+TGD++ +A + +GI NE
Sbjct: 594 VGVVGMLDPPRKEVMGSIQLCRD-AGIRVIMITGDNKGTAIAICRRIGIFGENEEVADRA 652
Query: 637 ----------------------VYCSLKPEDKLNHVKRTSRDMGGGLIMVGEGINDAPAL 674
+ ++P K + + + M G+G+NDAPAL
Sbjct: 653 YTGREFDDLPLAEQREACRRACCFARVEPSHK-SKIVEYLQSYDEITAMTGDGVNDAPAL 711
Query: 675 AAATVGIVLAQRASATAIAVADVLLLRNNISGVPFCVAKSRQTTSLVKQ 723
A +GI + +A A ++++L +N S + V + R + +KQ
Sbjct: 712 KKAEIGIAMGS-GTAVAKTASEMVLADDNFSTIVAAVEEGRAIYNNMKQ 759
>pdb|3TLM|A Chain A, Crystal Structure Of Endoplasmic Reticulum Ca2+-Atpase
(Serca) From Bovine Muscle
Length = 992
Score = 45.1 bits (105), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 56/228 (24%), Positives = 89/228 (39%), Gaps = 28/228 (12%)
Query: 243 RSVPVHDVEVGSYILVGAGEAVPVDCEVYQ-GTATITIEH--LTGE----VKPLEAKVGD 295
+ + D+ G + V G+ VP D + + T+ ++ LTGE +K E
Sbjct: 138 QRIKARDIVPGDIVEVAVGDKVPADIRILTIKSTTLRVDQSILTGESVSVIKHTEPVPDP 197
Query: 296 R---------IPGGARNLDGRMILKATKTWNESTLNRIVQLTEEAQLNKPKLQRWLDEFG 346
R + G G+ I T + + +I + +K LQ+ LDEFG
Sbjct: 198 RAVNQDKKNMLFSGTNIAAGKAIGIVATTGVGTEIGKIRDQMAATEQDKTPLQQKLDEFG 257
Query: 347 EQYSKXXXXLSLAIALIGPFLFKWSFIGTSVCRGSVYRALGLMVAASPCXXXXXXXXXXX 406
EQ SK + +A+ LI F G S RG++Y A
Sbjct: 258 EQLSKVISLICVAVWLINIGHFNDPVHGGSWIRGAIY----YFKIAVALAVAAIPEGLPA 313
Query: 407 XISSC--------ARKGILLKGGQVLDALASCHTIAFDKTGTLTTGGL 446
I++C A+K +++ ++ L I DKTGTLTT +
Sbjct: 314 VITTCLALGTRRMAKKNAIVRSLPSVETLGCTSVICSDKTGTLTTNQM 361
Score = 44.3 bits (103), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 42/169 (24%), Positives = 74/169 (43%), Gaps = 34/169 (20%)
Query: 586 VTLIHLEDRPRPGVSDVIAELKDHARLRVMMLTGDHESSAQRVANAVGI---NE------ 636
V ++ + D PR V I +D A +RV+M+TGD++ +A + +GI NE
Sbjct: 593 VGVVGMLDPPRKEVMGSIQLCRD-AGIRVIMITGDNKGTAIAICRRIGIFGENEDVADRA 651
Query: 637 ----------------------VYCSLKPEDKLNHVKRTSRDMGGGLIMVGEGINDAPAL 674
+ ++P K + + + M G+G+NDAPAL
Sbjct: 652 YTGREFDDLPLAEQREACRRACCFARVEPTHK-SKIVEYLQSFDEITAMTGDGVNDAPAL 710
Query: 675 AAATVGIVLAQRASATAIAVADVLLLRNNISGVPFCVAKSRQTTSLVKQ 723
A +GI + +A A ++++L +N S + V + R + +KQ
Sbjct: 711 KKAEIGIAMGS-GTAVAKTASEMVLADDNFSTIVAAVEEGRAIYNNMKQ 758
>pdb|3BA6|A Chain A, Structure Of The Ca2e1p Phosphoenzyme Intermediate Of The
Serca Ca2+-Atpase
Length = 994
Score = 44.3 bits (103), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 42/169 (24%), Positives = 74/169 (43%), Gaps = 34/169 (20%)
Query: 586 VTLIHLEDRPRPGVSDVIAELKDHARLRVMMLTGDHESSAQRVANAVGI---NE------ 636
V ++ + D PR V I +D A +RV+M+TGD++ +A + +GI NE
Sbjct: 594 VGVVGMLDPPRKEVMGSIQLCRD-AGIRVIMITGDNKGTAIAICRRIGIFGENEEVADRA 652
Query: 637 ----------------------VYCSLKPEDKLNHVKRTSRDMGGGLIMVGEGINDAPAL 674
+ ++P K + + + M G+G+NDAPAL
Sbjct: 653 YTGREFDDLPLAEQREACRRACCFARVEPSHK-SKIVEYLQSYDEITAMTGDGVNDAPAL 711
Query: 675 AAATVGIVLAQRASATAIAVADVLLLRNNISGVPFCVAKSRQTTSLVKQ 723
A +GI + +A A ++++L +N S + V + R + +KQ
Sbjct: 712 KKAEIGIAMGS-GTAVAKTASEMVLADDNFSTIVAAVEEGRAIYNNMKQ 759
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 54/228 (23%), Positives = 88/228 (38%), Gaps = 28/228 (12%)
Query: 243 RSVPVHDVEVGSYILVGAGEAVPVDCEVYQ-GTATITIEH--LTGE----VKPLEAKVGD 295
+ + D+ G + V G+ VP D + + T+ ++ LTGE +K E
Sbjct: 138 QRIKARDIVPGDIVEVAVGDKVPADIRILSIKSTTLRVDQSILTGESVSVIKHTEPVPDP 197
Query: 296 R---------IPGGARNLDGRMILKATKTWNESTLNRIVQLTEEAQLNKPKLQRWLDEFG 346
R + G G+ + T + + +I + +K LQ+ LDEFG
Sbjct: 198 RAVNQDKKNMLFSGTNIAAGKALGIVATTGVSTEIGKIRDQMAATEQDKTPLQQKLDEFG 257
Query: 347 EQYSKXXXXLSLAIALIGPFLFKWSFIGTSVCRGSVYRALGLMVAASPCXXXXXXXXXXX 406
EQ SK + +A+ LI F G S RG++Y A
Sbjct: 258 EQLSKVISLICVAVWLINIGHFNDPVHGGSWIRGAIY----YFKIAVALAVAAIPEGLPA 313
Query: 407 XISSC--------ARKGILLKGGQVLDALASCHTIAFDKTGTLTTGGL 446
I++C A+K +++ ++ L I KTGTLTT +
Sbjct: 314 VITTCLALGTRRMAKKNAIVRSLPSVETLGCTSVICSXKTGTLTTNQM 361
>pdb|1MHS|A Chain A, Model Of Neurospora Crassa Proton Atpase
pdb|1MHS|B Chain B, Model Of Neurospora Crassa Proton Atpase
Length = 920
Score = 43.1 bits (100), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 107/525 (20%), Positives = 195/525 (37%), Gaps = 81/525 (15%)
Query: 243 RSVPVHDVEVGSYILVGAGEAVPVDCEVYQGTATITIEH--LTGEVKPLEAKVGDRIPGG 300
+ + +V G + V G +P D + A + ++ LTGE ++ GD++
Sbjct: 189 KEIEAPEVVPGDILQVEEGTIIPADGRIVTDDAFLQVDQSALTGESLAVDKHKGDQVFAS 248
Query: 301 ARNLDGRMILKATKTWNESTLNRIVQLTEEAQLNKPKLQRWLDEFGEQYSKXXXXLSLAI 360
+ G + T T + + + R L A L+ G L I
Sbjct: 249 SAVKRGEAFVVITATGDNTFVGRAAALVNAASGGSGHFTEVLNGIGT---------ILLI 299
Query: 361 ALIGPFLFKW--SFIGTSVCRGSVYRALGLMVAASPCXX-XXXXXXXXXXISSCARKGIL 417
+I L W SF ++ + L + + P + A+K +
Sbjct: 300 LVIFTLLIVWVSSFYRSNPIVQILEFTLAITIIGVPVGLPAVVTTTMAVGAAYLAKKKAI 359
Query: 418 LKGGQVLDALASCHTIAFDKTGTLTTGGLMFKAIEPIYGHWIRSKKTHDISCCIPNCEKE 477
++ +++LA + DKTGTLT L +P + + +C + +K+
Sbjct: 360 VQKLSAIESLAGVEILCSDKTGTLTKNKLSLH--DPYTVAGVDPEDLMLTACLAASRKKK 417
Query: 478 AL-AVAAAMEKG-TTHPIGRAVVDHSIGKDLPSVSIDRFEYFP--GRGLTATVNGIESGT 533
+ A+ A K +P ++V L + +F F + + A V +
Sbjct: 418 GIDAIDKAFLKSLKYYPRAKSV--------LSKYKVLQFHPFDPVSKKVVAVVESPQ--- 466
Query: 534 EGGKELKASLGSVDFITSLCKSEDESRKIKEAVNGSSYG-------RGFVHAALSVN--- 583
G+ + G+ F+ K+ +E I E V+ + RGF ++
Sbjct: 467 --GERITCVKGAPLFV---LKTVEEDHPIPEEVDQAYKNKVAEFATRGFRSLGVARKRGE 521
Query: 584 ---EKVTLIHLEDRPRPGVSDVIAELKDHARLRVMMLTGDHESSAQRVANAVGI------ 634
E + ++ D PR + E K L + MLTGD A+ + +G+
Sbjct: 522 GSWEILGIMPCMDPPRHDTYKTVCEAKTLG-LSIKMLTGDAVGIARETSRQLGLGTNIYN 580
Query: 635 --------------NEVY---------CSLKPEDKLNHVKRTSRDMGGGLIMVGEGINDA 671
+EVY + P+ K N V+ + G + M G+G+NDA
Sbjct: 581 AERLGLGGGGDMPGSEVYDFVEAADGFAEVFPQHKYNVVE-ILQQRGYLVAMTGDGVNDA 639
Query: 672 PALAAATVGIVLAQRASATAIAVADVLLLRNNISGVPFCVAKSRQ 716
P+L A GI + + +S A + AD++ L + + + SRQ
Sbjct: 640 PSLKKADTGIAV-EGSSDAARSAADIVFLAPGLGAIIDALKTSRQ 683
>pdb|3B8C|A Chain A, Crystal Structure Of A Plasma Membrane Proton Pump
pdb|3B8C|B Chain B, Crystal Structure Of A Plasma Membrane Proton Pump
Length = 885
Score = 38.5 bits (88), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 108/519 (20%), Positives = 185/519 (35%), Gaps = 89/519 (17%)
Query: 253 GSYILVGAGEAVPVDCEVYQGTA-TITIEHLTGEVKPLEAKVGDRIPGGARNLDGRMILK 311
G + + G+ +P D + +G + LTGE P+ G + G+ G +
Sbjct: 151 GDIVSIKLGDIIPADARLLEGDPLKVDQSALTGESLPVTKHPGQEVFSGSTCKQGEIEAV 210
Query: 312 ATKTWNESTLNRIVQLTEEAQLNKPKLQRWLDEFGEQYSKXXXXLSLAIALIGPFLFKWS 371
T + + L + Q+ L G S+AI ++ + +
Sbjct: 211 VIATGVHTFFGKAAHLVDSTN-QVGHFQKVLTAIGN-----FCICSIAIGMVIEIIVMYP 264
Query: 372 FIGTSVCRGSVYRALGLMVAASPCXXXXXXXXXXXXIS-SCARKGILLKGGQVLDALASC 430
I R + L L++ P S +++G + K ++ +A
Sbjct: 265 -IQRRKYRDGIDNLLVLLIGGIPIAMPTVLSVTMAIGSHRLSQQGAITKRMTAIEEMAGM 323
Query: 431 HTIAFDKTGTLTTGGLMFKAIEPIYGHWIRSKKTHDISCCIPNCEKEALAVAAAMEKGTT 490
+ DKTGTLT L K ++ C EK+ + + AAM
Sbjct: 324 DVLCSDKTGTLTLNKLSV------------DKNLVEVFC--KGVEKDQVLLFAAMASRVE 369
Query: 491 HP--IGRAVVDHSIGKDLPSVSIDRFEYFP-----GRGLTATVNGIESGTEGGKELKASL 543
+ I A+V I + P R ++G G + S
Sbjct: 370 NQDAIDAAMVGMLADPKEARAGIREVHFLPFNPVDKRTALTYIDG------SGNWHRVSK 423
Query: 544 GSVDFITSLCK-SEDESRKIKEAVNGSSYGRGFVHAALS---VNEK-----------VTL 588
G+ + I L K S D S+K+ ++ + RG A++ V EK V L
Sbjct: 424 GAPEQILELAKASNDLSKKVLSIIDKYAE-RGLRSLAVARQVVPEKTKESPGAPWEFVGL 482
Query: 589 IHLEDRPRPGVSDVIAELKDHARLRVMMLTGDHESSAQRVANAVGIN------------- 635
+ L D PR ++ I + + V M+TGD + + +G+
Sbjct: 483 LPLFDPPRHDSAETIRRALNLG-VNVKMITGDQLAIGKETGRRLGMGTNMYPSSALLGTH 541
Query: 636 -----------------EVYCSLKPEDKLNHVKRTS--RDMGGGLIMVGEGINDAPALAA 676
+ + + PE K VK+ + + G M G+G+NDAPAL
Sbjct: 542 KDANLASIPVEELIEKADGFAGVFPEHKYEIVKKLQERKHIVG---MTGDGVNDAPALKK 598
Query: 677 ATVGIVLAQRASATAIAVADVLLLRNNISGVPFCVAKSR 715
A +GI +A A+ A +D++L +S + V SR
Sbjct: 599 ADIGIAVAD-ATDAARGASDIVLTEPGLSVIISAVLTSR 636
>pdb|3AQO|A Chain A, Structure And Function Of A Membrane Component Secdf That
Enhances Protein Export
pdb|3AQO|B Chain B, Structure And Function Of A Membrane Component Secdf That
Enhances Protein Export
pdb|3AQO|C Chain C, Structure And Function Of A Membrane Component Secdf That
Enhances Protein Export
pdb|3AQO|D Chain D, Structure And Function Of A Membrane Component Secdf That
Enhances Protein Export
Length = 229
Score = 32.0 bits (71), Expect = 1.4, Method: Composition-based stats.
Identities = 40/160 (25%), Positives = 70/160 (43%), Gaps = 15/160 (9%)
Query: 558 ESRKIKEAVNGSSYGRGFVHAALSVNEKVTLIHLEDRPRPGVSDVIAELKDHARLRVMML 617
E R +KE G++ + +N+ L + PR ++ +L L +L
Sbjct: 80 EFRIVKEGATGTTVAQ--------INQA-----LRENPRLNREELEKDLIKPEDLGPPLL 126
Query: 618 TGDHESSAQRVANAVGINEVYCSLKPEDKLNHVKRTSRDMGGGLIMVGEG-INDAPAL-A 675
TG + A+ V + G +V + PE + T +++G L +V +G + AP +
Sbjct: 127 TGADLADARAVFDQFGRPQVSLTFTPEGAKKFEEVTRQNIGKRLAIVLDGRVYTAPVIRQ 186
Query: 676 AATVGIVLAQRASATAIAVADVLLLRNNISGVPFCVAKSR 715
A T G + + S+ A L+LR+ VP VA+ R
Sbjct: 187 AITGGQAVIEGLSSVEEASEIALVLRSGSLPVPLKVAEIR 226
>pdb|2VOY|G Chain G, Cryoem Model Of Copa, The Copper Transporting Atpase From
Archaeoglobus Fulgidus
Length = 36
Score = 31.6 bits (70), Expect = 1.6, Method: Composition-based stats.
Identities = 15/30 (50%), Positives = 20/30 (66%)
Query: 334 NKPKLQRWLDEFGEQYSKXXXXLSLAIALI 363
+K LQ+ LDEFGEQ SK + +A+ LI
Sbjct: 3 DKTPLQQKLDEFGEQLSKVISLICVAVWLI 32
>pdb|3VA7|A Chain A, Crystal Structure Of The Kluyveromyces Lactis Urea
Carboxylase
Length = 1236
Score = 31.6 bits (70), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 31/66 (46%), Gaps = 4/66 (6%)
Query: 250 VEVGSYILVGAGEAVPVDCEVYQGTATITIEHLTGEVKPLEAKVGDRIPGGARNLDGRMI 309
++V + L +G+ P D E Y A + TG A VGD + G DG +I
Sbjct: 1142 IQVANAELKKSGDDKPQDVEEYPDDAELLYSEYTGRFWKPVAAVGDHVEAG----DGVII 1197
Query: 310 LKATKT 315
++A KT
Sbjct: 1198 IEAMKT 1203
>pdb|3AQP|A Chain A, Crystal Structure Of Secdf, A Translocon-Associated
Membrane Protein, From Thermus Thrmophilus
pdb|3AQP|B Chain B, Crystal Structure Of Secdf, A Translocon-Associated
Membrane Protein, From Thermus Thrmophilus
Length = 741
Score = 31.2 bits (69), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 41/169 (24%), Positives = 73/169 (43%), Gaps = 15/169 (8%)
Query: 558 ESRKIKEAVNGSSYGRGFVHAALSVNEKVTLIHLEDRPRPGVSDVIAELKDHARLRVMML 617
E R +KE G++ + +N+ L + PR ++ +L L +L
Sbjct: 114 EFRIVKEGATGTTVAQ--------INQA-----LRENPRLNREELEKDLIKPEDLGPPLL 160
Query: 618 TGDHESSAQRVANAVGINEVYCSLKPEDKLNHVKRTSRDMGGGLIMVGEG-INDAPAL-A 675
TG + A+ V + G +V + PE + T +++G L +V +G + AP +
Sbjct: 161 TGADLADARAVFDQFGRPQVSLTFTPEGAKKFEEVTRQNIGKRLAIVLDGRVYTAPVIRQ 220
Query: 676 AATVGIVLAQRASATAIAVADVLLLRNNISGVPFCVAKSRQTTSLVKQN 724
A T G + + S+ A L+LR+ VP VA+ R + Q+
Sbjct: 221 AITGGQAVIEGLSSVEEASEIALVLRSGSLPVPLKVAEIRAIGPTLGQD 269
>pdb|3S4C|A Chain A, Lactose Phosphorylase In Complex With Sulfate
pdb|3S4D|A Chain A, Lactose Phosphorylase In A Ternary Complex With Cellobiose
And Sulfate
Length = 822
Score = 29.6 bits (65), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 22/41 (53%), Gaps = 4/41 (9%)
Query: 497 VVDHSIGKDLPSVSIDRFEYFPGRGLTATVNGIESGTEGGK 537
VVD IG D+PS ++ R RG T + SGT+G +
Sbjct: 756 VVDPQIGPDVPSFTVTRV----ARGATYEITVTNSGTDGSR 792
>pdb|3RRS|A Chain A, Crystal Structure Analysis Of Cellobiose Phosphorylase
From Cellulomonas Uda
pdb|3RRS|B Chain B, Crystal Structure Analysis Of Cellobiose Phosphorylase
From Cellulomonas Uda
pdb|3RSY|A Chain A, Cellobiose Phosphorylase From Cellulomonas Uda In Complex
With Sulfate And Glycerol
pdb|3RSY|B Chain B, Cellobiose Phosphorylase From Cellulomonas Uda In Complex
With Sulfate And Glycerol
pdb|3S4A|A Chain A, Cellobiose Phosphorylase From Cellulomonas Uda In Complex
With Cellobiose
pdb|3S4A|B Chain B, Cellobiose Phosphorylase From Cellulomonas Uda In Complex
With Cellobiose
pdb|3S4B|A Chain A, Cellobiose Phosphorylase From Cellulomonas Uda In Complex
With Glucose
pdb|3S4B|B Chain B, Cellobiose Phosphorylase From Cellulomonas Uda In Complex
With Glucose
Length = 822
Score = 29.6 bits (65), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 22/41 (53%), Gaps = 4/41 (9%)
Query: 497 VVDHSIGKDLPSVSIDRFEYFPGRGLTATVNGIESGTEGGK 537
VVD IG D+PS ++ R RG T + SGT+G +
Sbjct: 756 VVDPQIGPDVPSFTVTRV----ARGATYEITVTNSGTDGSR 792
>pdb|2VOY|J Chain J, Cryoem Model Of Copa, The Copper Transporting Atpase From
Archaeoglobus Fulgidus
Length = 118
Score = 29.3 bits (64), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 15/50 (30%), Positives = 26/50 (52%)
Query: 475 EKEALAVAAAMEKGTTHPIGRAVVDHSIGKDLPSVSIDRFEYFPGRGLTA 524
E+E L +AA E+ + HPI A+V ++ + ++ E G G+ A
Sbjct: 15 ERELLRLAAIAERRSEHPIAEAIVKKALEHGIELGEPEKVEVIAGEGVVA 64
>pdb|2KMV|A Chain A, Solution Structure Of The Nucleotide Binding Domain Of The
Human Menkes Protein In The Atp-Free Form
pdb|2KMX|A Chain A, Solution Structure Of The Nucleotide Binding Domain Of The
Human Menkes Protein In The Atp-Bound Form
Length = 185
Score = 29.3 bits (64), Expect = 8.3, Method: Composition-based stats.
Identities = 16/55 (29%), Positives = 26/55 (47%), Gaps = 4/55 (7%)
Query: 479 LAVAAAMEKGTTHPIGRAVVDH---SIGKDLPSVSIDRFEYFPGRGLTATVNGIE 530
LA+ E + HP+G A+ + + + ID F+ PG G++ V IE
Sbjct: 28 LAIVGTAESNSEHPLGTAITKYCKQELDTETLGTCID-FQVVPGCGISCKVTNIE 81
>pdb|3DCM|X Chain X, Crystal Structure Of The Thermotoga Maritima Spout Family
Rna-Methyltransferase Protein Tm1570 In Complex With S-
Adenosyl-L-Methionine
Length = 192
Score = 29.3 bits (64), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 16/63 (25%), Positives = 28/63 (44%)
Query: 288 PLEAKVGDRIPGGARNLDGRMILKATKTWNESTLNRIVQLTEEAQLNKPKLQRWLDEFGE 347
P++ K G I NLD I + +T+N + L + + L+ W + FG
Sbjct: 13 PIKGKDGSIISTAVTNLDVHDIARTARTYNLKGYYIVTNLRAQQDMVSKMLKFWREGFGS 72
Query: 348 QYS 350
+Y+
Sbjct: 73 RYN 75
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.135 0.395
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 18,502,384
Number of Sequences: 62578
Number of extensions: 685927
Number of successful extensions: 1627
Number of sequences better than 100.0: 34
Number of HSP's better than 100.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 1531
Number of HSP's gapped (non-prelim): 54
length of query: 750
length of database: 14,973,337
effective HSP length: 106
effective length of query: 644
effective length of database: 8,340,069
effective search space: 5371004436
effective search space used: 5371004436
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)