Query 004479
Match_columns 750
No_of_seqs 342 out of 2962
Neff 8.1
Searched_HMMs 29240
Date Tue Mar 26 17:41:32 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/004479.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_1788-1792//hhsearch_pdb/004479hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rfu_A Copper efflux ATPase; a 1.0 1 1 907.3 60.9 640 52-749 39-713 (736)
2 3j09_A COPA, copper-exporting 1.0 1 1 879.0 40.6 646 16-749 24-693 (723)
3 3j08_A COPA, copper-exporting 1.0 1 1 851.5 40.5 578 114-749 16-615 (645)
4 1mhs_A Proton pump, plasma mem 1.0 1 1 790.7 42.2 526 169-735 125-702 (920)
5 3b8c_A ATPase 2, plasma membra 1.0 1 1 782.6 4.4 525 170-735 71-656 (885)
6 2zxe_A Na, K-ATPase alpha subu 1.0 1 1 750.8 54.5 549 169-738 106-794 (1028)
7 3ar4_A Sarcoplasmic/endoplasmi 1.0 1 1 742.4 54.9 553 169-737 63-774 (995)
8 3ixz_A Potassium-transporting 1.0 1 1 721.4 58.9 535 184-738 139-799 (1034)
9 2yj3_A Copper-transporting ATP 1.0 1 1 328.1 0.0 261 405-724 3-263 (263)
10 3a1c_A Probable copper-exporti 1.0 1 1 251.3 25.0 279 406-722 8-287 (287)
No 1
>3rfu_A Copper efflux ATPase; alpha helical, CPC, CXXC, ATP-binding, hydrolase, ION transp magnesium, Cu+, membrane, metal-binding; 3.20A {Legionella pneumophila subsp}
Probab=1.00 E-value=1 Score=907.29 Aligned_cols=640 Identities=24% Similarity=0.374 Sum_probs=541.3
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC---
Q ss_conf 64346788533566665666664457867789638999999995190568999999899999999999999964533---
Q 004479 52 PVNCLSHPHINHQHHYHDHHHHHRHNDCSELSGPQKAVIKFAKATRWLDLANFLREHLQLCCCAAALFLAAAACPYL--- 128 (750)
Q Consensus 52 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 128 (750)
.-.|..||.+.+.............. + . ..-.+........+.+++.+...+++.+++++++...++
T Consensus 39 ~~~~~m~~~V~~~~~G~cp~cgm~l~-------~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (736)
T 3rfu_A 39 VYTCPMHPEIRQSAPGHCPLCGMALE-------P--E-TVTVSEVVSPEYLDMRRRFWIALMLTIPVVILEMGGHGLKHF 108 (736)
T ss_dssp ---------------------------------------------CCHHHHHHHHHHHHHHHHHHHHHHHHHSCCCTTSS
T ss_pred EEHHHHHHHHHHCCCCCCCCCCCCHH-------C--C-CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 41877789986169987744442000-------0--1-233440326999999999999999999999999898764432
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH----------------------HHH
Q ss_conf 8999825799999999999971999999999988799994899999999999985----------------------468
Q 004479 129 LPKPAIKPLQNAFLAVAFPLVGVSASLDALTDIAGGKVNIHVLMAFAAFASIFMG----------------------NSL 186 (750)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~~~l~~~~~~~~~L~~ia~~~s~~~g----------------------~~~ 186 (750)
.+.+...|++++++++++++.||||++.+|++++++++|||+|+++++.++|+++ .|+
T Consensus 109 ~~~~~~~~~~~~l~~~v~~~~g~~f~~~a~~~l~~~~~~md~Lv~l~~~~a~~~S~~~~~~~~~~~~~~~~~~~~~~~yf 188 (736)
T 3rfu_A 109 ISGNGSSWIQLLLATPVVLWGGWPFFKRGWQSLKTGQLNMFTLIAMGIGVAWIYSMVAVLWPGVFPHAFRSQEGVVAVYF 188 (736)
T ss_dssp CSTTHHHHHHHHHHHHHHHTTTHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHHHHHCGGGSCSSSSCSSSCCCCCH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHH
T ss_conf 01207899999999999999538999999999985589759999999999999999998631004420013567643089
Q ss_pred HHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCEEEEECCCCCCCCEEEECCCCCCC
Q ss_conf 899-9999999777899999989999999986319993199972899998767871799836875779999983797226
Q 004479 187 EGG-LLLAMFNLAHIAEEFFTSRAMVDVKELKENYPDSVLVLNVDDDNLPDVSDLAYRSVPVHDVEVGSYILVGAGEAVP 265 (750)
Q Consensus 187 ~~~-~i~~~~~l~~~~~~~~~~rs~~~l~~L~~~~p~~a~v~r~~~~~~~~~~~~~~~~V~~~~l~vGDiI~i~~Ge~VP 265 (750)
+++ ++++++.++.++|.+.++|+.+.+++|.++.|++++++|+++ ++++|++++|+|||+|+|+|||+||
T Consensus 189 e~a~~ii~~~llg~~le~~a~~~~~~ai~~L~~l~p~~a~vv~~dg---------~~~~v~~~~l~~GDiv~v~~Ge~IP 259 (736)
T 3rfu_A 189 EAAAVITTLVLLGQVLELKAREQTGSAIRALLKLVPESAHRIKEDG---------SEEEVSLDNVAVGDLLRVRPGEKIP 259 (736)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCCCSSHHHHHTCCCCCEEEEEETTE---------EEEEEETTTCCTTCEECCCSSEECC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCC---------EEEEEEHHHCCCCCEEEECCCCCCC
T ss_conf 9999999999999999999999999999998833998899995299---------8999877668989889987997515
Q ss_pred CCCEEEECEEEEEECCCCCCCCEEEECCCCCCCCCCEECCEEEEEEEEEECCCCHHHHHHHHHHHHHCCCCHHHHHHHHH
Q ss_conf 57289961024630365698660851158854787400040699999975333289999999999610896458999999
Q 004479 266 VDCEVYQGTATITIEHLTGEVKPLEAKVGDRIPGGARNLDGRMILKATKTWNESTLNRIVQLTEEAQLNKPKLQRWLDEF 345 (750)
Q Consensus 266 aDg~vi~G~~~Vdes~lTGEs~pv~k~~g~~v~aGt~~~~G~~~v~v~~~g~~T~~~~i~~l~~~a~~~k~~~q~~~~~~ 345 (750)
|||+|++|++.||||+|||||.|+.|.+|+.|++||.|.+|.++++|+++|.+|.++||.+++++++.+|+|+|+.+|++
T Consensus 260 aDg~vl~G~~~VDES~LTGES~Pv~K~~gd~v~~Gt~~~~G~~~~~v~~~G~~T~l~~I~~lv~~a~~~k~~~q~~~d~~ 339 (736)
T 3rfu_A 260 VDGEVQEGRSFVDESMVTGEPIPVAKEASAKVIGATINQTGSFVMKALHVGSDTMLARIVQMVSDAQRSRAPIQRLADTV 339 (736)
T ss_dssp SCEEECSSCEEEECSSSTTCSSCEEECTTCEECTTCEEESCCCCEEECCCSTTSHHHHHHHHHHHHHSSCCCCCCHHHHH
T ss_pred CCEEEEECCEEEEECCCCCCCCCEEECCCCCCCCCEEECCCEEEEEEEEECHHHHHHHHHHHHHHHHHCCCHHHHHHHHH
T ss_conf 63799978667651235786142783168867786486145099999984122599999999997432689799999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHCCCCCCCCHH
Q ss_conf 857779999999999998534333101256-4035689999999996621114269-99999999999873941037147
Q 004479 346 GEQYSKVVVVLSLAIALIGPFLFKWSFIGT-SVCRGSVYRALGLMVAASPCALAVA-PLAYATAISSCARKGILLKGGQV 423 (750)
Q Consensus 346 a~~~~~~~l~~a~~~~~i~~~~~~~~~~~~-~~~~~~~~~~~~vlv~~~P~aL~la-p~a~~~a~~~~~~~gilvk~~~~ 423 (750)
+.+|++++++++++++++ |.+.+. ..+..++.+++++++++|||+|+++ |+++..++.+++++|+++|++++
T Consensus 340 a~~~v~~vl~ia~~~~~~------w~~~~~~~~~~~~l~~ai~vlviacPcaL~la~p~a~~~~~~~~a~~gilvk~~~a 413 (736)
T 3rfu_A 340 SGWFVPAVILVAVLSFIV------WALLGPQPALSYGLIAAVSVLIIACPCALGLATPMSIMVGVGKGAQSGVLIKNAEA 413 (736)
T ss_dssp HHHHHHHHHHHHHHHHHH------HHHHCSSSSTTHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHHHHHHTTEEESCHHH
T ss_pred HHHHHHHHHHHHHHHHHH------HHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEECHHHH
T ss_conf 999999999999999999------99967873299999998774877324278888999999999997515133233789
Q ss_pred HHHHCCCCEEEECCCCCCCCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHCC
Q ss_conf 77410456899858897867942899997137731136776666557875389999999998518999447899842117
Q 004479 424 LDALASCHTIAFDKTGTLTTGGLMFKAIEPIYGHWIRSKKTHDISCCIPNCEKEALAVAAAMEKGTTHPIGRAVVDHSIG 503 (750)
Q Consensus 424 lE~L~~v~~i~fDKTGTLT~g~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aa~~e~~s~hp~~~Ai~~~~~~ 503 (750)
+|.|+++|+||||||||||+|+|+|+++. .++.. +++.+.+++++|..++||+++|+++++..
T Consensus 414 lE~l~~v~~i~fDKTGTLT~g~~~v~~i~-~~~~~----------------~~~~l~~aa~le~~s~hPla~Aiv~~a~~ 476 (736)
T 3rfu_A 414 LERMEKVNTLVVDKTGTLTEGHPKLTRIV-TDDFV----------------EDNALALAAALEHQSEHPLANAIVHAAKE 476 (736)
T ss_dssp HHHHTSCCEEEECCBTTTBCSSCEEEEEE-ESSSC----------------HHHHHHHHHHHHHSSCCHHHHHHHHHHHT
T ss_pred HHHHCCCCEEEEECCCCCCCCCEEEEEEE-ECCCC----------------HHHHHHHHHHHHHCCCCHHHHHHHHHHHH
T ss_conf 99862799999818988758952799998-34887----------------78999999998622899289999999996
Q ss_pred CCCCCCCCCCEEEECCCEEEEEEECEEECCCCCCEEEECCCCHHHHHHHCCCHHHHHHHHHHHCCCCCCCCEEEEEECCC
Q ss_conf 99998655652565597479999284623689713454158657884203682689999998503678971899961059
Q 004479 504 KDLPSVSIDRFEYFPGRGLTATVNGIESGTEGGKELKASLGSVDFITSLCKSEDESRKIKEAVNGSSYGRGFVHAALSVN 583 (750)
Q Consensus 504 ~~~~~~~~~~f~~~~g~g~~~~v~~~~~~~~~~~~~~~~kGa~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 583 (750)
.+.....+.+|++.+|+|+.+.+++. .+.+|+++++.+.+..........+ .....|.+.++++. ++
T Consensus 477 ~~~~~~~~~~f~~~~g~gv~~~~~g~----------~~~~G~~~~~~~~~~~~~~~~~~~~--~~~~~G~~vl~va~-d~ 543 (736)
T 3rfu_A 477 KGLSLGSVEAFEAPTGKGVVGQVDGH----------HVAIGNARLMQEHGGDNAPLFEKAD--ELRGKGASVMFMAV-DG 543 (736)
T ss_dssp TCCCCCCCSCCCCCTTTEEEECSSSS----------CEEEESHHHHHHHCCCCHHHHHHHH--HHHHTTCEEEEEEE-TT
T ss_pred CCCCCCCCCCCCCCCCCEEEEEECCE----------EEEECCHHHHHHCCCCHHHHHHHHH--HHHHCCCEEEEEEE-CC
T ss_conf 59986675432024886589999998----------9997389999873997167899999--99856986999987-99
Q ss_pred CEEEEEEECCCCCHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHCCCCEEEECCCHHHHHHHHHHHHHHCCCEEEE
Q ss_conf 41799994189944089999999962996999935999999999999829846995179866999999997504996999
Q 004479 584 EKVTLIHLEDRPRPGVSDVIAELKDHARLRVMMLTGDHESSAQRVANAVGINEVYCSLKPEDKLNHVKRTSRDMGGGLIM 663 (750)
Q Consensus 584 ~~~G~i~l~D~lr~~~~~aI~~Lk~~~gi~v~mlTGD~~~tA~~iA~~~GI~~v~a~~~Pe~K~~~V~~l~~~~g~~V~m 663 (750)
..+|+++++|++||+++++|++||+ .|++++|+|||+..+|.++|+++||++++++++|+||.++|+.+|++ |+.|+|
T Consensus 544 ~~~G~i~i~D~i~~~~~~aI~~L~~-~Gi~v~mlTGd~~~~a~~ia~~lgi~~v~a~~~P~~K~~~v~~l~~~-g~~V~~ 621 (736)
T 3rfu_A 544 KTVALLVVEDPIKSSTPETILELQQ-SGIEIVMLTGDSKRTAEAVAGTLGIKKVVAEIMPEDKSRIVSELKDK-GLIVAM 621 (736)
T ss_dssp EEEEEEEEECCBCSSHHHHHHHHHH-HTCEEEEECSSCHHHHHHHHHHHTCCCEECSCCHHHHHHHHHHHHHH-SCCEEE
T ss_pred EEEEEEEEECCCHHHHHHHHHHHHH-CCCEEEEECCCCHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHC-CCEEEE
T ss_conf 8999998503220309999999998-79949998798989999999985998799706999999999999966-998999
Q ss_pred ECCCCCCHHHHHHCCCCEEECCCCCHHHHHHCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---
Q ss_conf 95993589999838932884999748898633999926998988999999999999999999999999999999998---
Q 004479 664 VGEGINDAPALAAATVGIVLAQRASATAIAVADVLLLRNNISGVPFCVAKSRQTTSLVKQNVALALSCIILASLPSV--- 740 (750)
Q Consensus 664 vGDG~NDapAL~~AdVGIamg~~~sd~A~~aaDivL~~d~l~~i~~~i~~~R~~~~~i~~ni~~~l~~~~~~~~~~~--- 740 (750)
+|||+||+|||++||||||||+ |+|.++++||++++++++.+++.++++||+++++|+||+.|+++||++++.+++
T Consensus 622 vGDG~ND~paL~~AdvGIAmg~-g~d~a~~~AD~vl~~~~~~~i~~ai~~sr~t~~~i~qnl~~a~~yN~~~iplAag~l 700 (736)
T 3rfu_A 622 AGDGVNDAPALAKADIGIAMGT-GTDVAIESAGVTLLHGDLRGIAKARRLSESTMSNIRQNLFFAFIYNVLGVPLAAGVL 700 (736)
T ss_dssp EECSSTTHHHHHHSSEEEEESS-SCSHHHHHCSEEECSCCSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSS
T ss_pred EECCHHHHHHHHHCCEEEEECC-CCHHHHHHCCEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 9898576999986997799478-659999769999926987899999999999999999999999999999999999878
Q ss_pred ---HHC-CCCCCC
Q ss_conf ---500-000035
Q 004479 741 ---LGF-LPLWLT 749 (750)
Q Consensus 741 ---~G~-l~~~~a 749 (750)
+|+ ++||+|
T Consensus 701 ~p~~G~~l~P~~a 713 (736)
T 3rfu_A 701 YPLTGLLLSPMIA 713 (736)
T ss_dssp TTTSSCCCCHHHH
T ss_pred HHHCCCHHHHHHH
T ss_conf 7750431329999
No 2
>3j09_A COPA, copper-exporting P-type ATPase A; copper transporter, adenosine triphosph archaeal proteins, cation transport proteins; 10.00A {Archaeoglobus fulgidus}
Probab=1.00 E-value=1 Score=878.99 Aligned_cols=646 Identities=25% Similarity=0.327 Sum_probs=534.0
Q ss_pred CCCCCCCCCCEECCCCCCCEEECCCCC--CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHH
Q ss_conf 898544321100037874100034222--345677755643467885335666656666644578677896389999999
Q 004479 16 PSPTRSIRLKRVNSLKPTLSFTHPVIR--FNFKPLNYRPVNCLSHPHINHQHHYHDHHHHHRHNDCSELSGPQKAVIKFA 93 (750)
Q Consensus 16 ~~~~~~i~~~~v~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (750)
-....||.+++||+++++++|+.+... ..+..+.++.......+.... .. .+. .. .++..
T Consensus 24 L~~~~GV~~v~Vnl~~~~~~V~~d~~~~~~~~i~~ai~~~Gy~~~~~~~~---~~------~~~--~~---~~~~~---- 85 (723)
T 3j09_A 24 VGSLEGVEEVRVNLATETAFIRFDEKRIDFETIKRVIEDLGYGVVDEQAA---VS------AEV--EH---LSRMK---- 85 (723)
T ss_dssp HHTSTTEEEEEEETTTTEEEEEECTTTCCHHHHHHHHHHHCCEESSCCCC---CC------CCC--CC---CCCSC----
T ss_pred HHCCCCCEEEEEECCCCEEEEEECCCCCCHHHHHHHHHHCCCCCCCCCCC---CC------HHH--HH---HHHHH----
T ss_conf 84599953899975787799984788689999999998438765432111---10------116--88---99999----
Q ss_pred HHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHH
Q ss_conf 95190568999999899999999999999964533899982579999999999997199999999998879999489999
Q 004479 94 KATRWLDLANFLREHLQLCCCAAALFLAAAACPYLLPKPAIKPLQNAFLAVAFPLVGVSASLDALTDIAGGKVNIHVLMA 173 (750)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~~~l~~~~~~~~~L~~ 173 (750)
++.+...+++.++++++++ .. .|...|++++++++++++.||||++.+|++++++++|||+|++
T Consensus 86 ------------~~~~~~~~~~~~~~~~~~~-~~---~~~~~~~~~~l~~~~~~~~g~~~~~~a~~~l~~~~~~md~l~~ 149 (723)
T 3j09_A 86 ------------RKLYVAAFAGVLLLFLAHF-IS---LPYEDFVQLLIALPAIFYSGSSIFKAAFSALRRRTLNMDVMYS 149 (723)
T ss_dssp ------------CCSSSTTTTHHHHHHHTTS-SC---SSSSCCSCCSTHHHHHHHHHHHHHHHTCCTTTTCSTTSCSSCS
T ss_pred ------------HHHHHHHHHHHHHHHHHHH-HC---CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHH
T ss_conf ------------9999999999999999997-40---3237899999999999996899999999999818898299999
Q ss_pred HHHHHHHHHHH------------HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCC
Q ss_conf 99999999854------------68-899999999977789999998999999998631999319997289999876787
Q 004479 174 FAAFASIFMGN------------SL-EGGLLLAMFNLAHIAEEFFTSRAMVDVKELKENYPDSVLVLNVDDDNLPDVSDL 240 (750)
Q Consensus 174 ia~~~s~~~g~------------~~-~~~~i~~~~~l~~~~~~~~~~rs~~~l~~L~~~~p~~a~v~r~~~~~~~~~~~~ 240 (750)
+++.++|+++. |+ +++++++++.++.++|.+.++|+++.+++|.++.|++++|+|+|
T Consensus 150 l~~~~a~~~s~~~~~~~~~~~~~~~~~~~~i~~~~~ig~~le~~~~~~~~~~i~~l~~l~~~~a~v~r~g---------- 219 (723)
T 3j09_A 150 MGVGAAFLASVLSTAGVLPREYSFYETSVLLLAFLLLGRTLEARAKSRTGEAIKKLVGLQAKTAVVIRDG---------- 219 (723)
T ss_dssp CHHHHHHHHHHHHHHTTTTCCCCCCTTHHHHHHHHHHHHHHHHHHHTTCCCTTHHHHHTSCSEEEEEETT----------
T ss_pred HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECC----------
T ss_conf 9999999999999985146632399999999999999999999999999999988872699756999899----------
Q ss_pred CEEEEECCCCCCCCEEEECCCCCCCCCCEEEECEEEEEECCCCCCCCEEEECCCCCCCCCCEECCEEEEEEEEEECCCCH
Q ss_conf 17998368757799999837972265728996102463036569866085115885478740004069999997533328
Q 004479 241 AYRSVPVHDVEVGSYILVGAGEAVPVDCEVYQGTATITIEHLTGEVKPLEAKVGDRIPGGARNLDGRMILKATKTWNEST 320 (750)
Q Consensus 241 ~~~~V~~~~l~vGDiI~i~~Ge~VPaDg~vi~G~~~Vdes~lTGEs~pv~k~~g~~v~aGt~~~~G~~~v~v~~~g~~T~ 320 (750)
++++|++++|+|||+|.|++||+|||||+|++|++.||||+|||||.|+.|.+|+.||+||.|.+|.++++|+++|.+|.
T Consensus 220 ~~~~i~~~~l~~GDiv~v~~Ge~IPaDg~vl~G~~~VdeS~LTGES~pv~K~~g~~v~~Gt~~~~g~~~~~v~~~g~~T~ 299 (723)
T 3j09_A 220 KEIAVPVEEVAVGDIVIVRPGEKIPVDGVVVEGESYVDESMISGEPVPVLKSKGDEVFGATINNTGVLKIRATRVGGETL 299 (723)
T ss_dssp EEEEEEGGGCCTTCEEEECTTCBCCSEEEEEECCEEEECHHHHCCSSCEEECTTCEECTTCEECSSCEEEEEEECGGGSH
T ss_pred EEEEEEHHHCCCCCEEEECCCCEEEEEEEEEECCEEEECCCCCCCCCCEEECCCCEECCCEEEECCCEEEEEEEECCCCH
T ss_conf 89998989979998999889998856799997776886000138876466368982304169706729999998467439
Q ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999996108964589999998577799999999999985343331012564035689999999996621114269
Q 004479 321 LNRIVQLTEEAQLNKPKLQRWLDEFGEQYSKVVVVLSLAIALIGPFLFKWSFIGTSVCRGSVYRALGLMVAASPCALAVA 400 (750)
Q Consensus 321 ~~~i~~l~~~a~~~k~~~q~~~~~~a~~~~~~~l~~a~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~vlv~~~P~aL~la 400 (750)
+++|.+++++++.+|+|+|+.+|+++.+|++++++++++++ ..|.+.....+..++.+++++++++|||+|+++
T Consensus 300 l~~i~~lv~~a~~~k~~~~~~~d~~~~~~~~~vl~~a~~~~------~~~~~~~~~~~~~~~~~~i~vlvia~P~aL~la 373 (723)
T 3j09_A 300 LAQIVKLVEDAMGSKPPIQRLADKVVAYFIPTVLLVAISAF------IYWYFIAHAPLLFAFTTLIAVLVVACPCAFGLA 373 (723)
T ss_dssp HHHHHHHHSSSCCSCCHHHHHHHHHHHHHHHHHHHHHHHHH------TTSCSSTTCTTCCSHHHHHHHHHHHSCTTHHHH
T ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999975346983899999999999999999999999------999985688699999999999975026789999
Q ss_pred -HHHHHHHHHHHHHCCCCCCCCHHHHHHCCCCEEEECCCCCCCCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCHHHHH
Q ss_conf -9999999999987394103714777410456899858897867942899997137731136776666557875389999
Q 004479 401 -PLAYATAISSCARKGILLKGGQVLDALASCHTIAFDKTGTLTTGGLMFKAIEPIYGHWIRSKKTHDISCCIPNCEKEAL 479 (750)
Q Consensus 401 -p~a~~~a~~~~~~~gilvk~~~~lE~L~~v~~i~fDKTGTLT~g~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l 479 (750)
|+++..++.+++++|+++|+++++|.||++|++|||||||||+|+|++.++.+.+.. +++++
T Consensus 374 ~p~a~~~~~~~~a~~gilvk~~~~lE~lg~v~~i~fDKTGTLT~g~~~v~~~~~~~~~-----------------~~~~l 436 (723)
T 3j09_A 374 TPTALTVGMGKGAELGILIKNADALEVAEKVTAVIFDKTGTLTKGKPEVTDLVPLNGD-----------------ERELL 436 (723)
T ss_dssp HHHHHHHHHHHHHTTTCEESSTTHHHHGGGCCEEEEEHHHHTSCSCCEEEEEEESSSC-----------------HHHHH
T ss_pred HHHHHHHHHHHHHHCCEEEECHHHHHHHHCCCEEEECCCCCCCCCCEEEEEEEECCCC-----------------HHHHH
T ss_conf 9999999999999889389482899876249899984777552696279999807999-----------------89999
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHCCCCCCCCCCCCEEEECCCEEEEEEECEEECCCCCCEEEECCCCHHHHHHHCCCH-HH
Q ss_conf 99999851899944789984211799998655652565597479999284623689713454158657884203682-68
Q 004479 480 AVAAAMEKGTTHPIGRAVVDHSIGKDLPSVSIDRFEYFPGRGLTATVNGIESGTEGGKELKASLGSVDFITSLCKSE-DE 558 (750)
Q Consensus 480 ~~aa~~e~~s~hp~~~Ai~~~~~~~~~~~~~~~~f~~~~g~g~~~~v~~~~~~~~~~~~~~~~kGa~~~i~~~~~~~-~~ 558 (750)
.+++++|..++||+++|+++++...+.......+|++.+|+|+.+ . .+.+|+++++.+..... ..
T Consensus 437 ~~aa~~e~~s~hP~~~Ai~~~a~~~~~~~~~~~~~~~~~g~g~~~---~-----------~~~~g~~~~~~~~~~~~~~~ 502 (723)
T 3j09_A 437 RLAAIAERRSEHPIAEAIVKKALEHGIELGEPEKVEVIAGEGVVA---D-----------GILVGNKRLMEDFGVAVSNE 502 (723)
T ss_dssp HHHHHHHTTCCSHHHHHHHHHHHHTTCCCCSCCCCEEETTTEEEE---T-----------TEEEECHHHHHHTTCCCCHH
T ss_pred HHHHHHHCCCCCCHHHHHHHHHHHCCCCCCCCCCEEEECCCCEEE---E-----------EEEECCHHHHHHCCCCCCHH
T ss_conf 999998504999542899999985499857864459966981699---9-----------99977899997549986089
Q ss_pred HHHHHHHHCCCCCCCCEEEEEECCCCEEEEEEECCCCCHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHCCCCEEE
Q ss_conf 99999985036789718999610594179999418994408999999996299699993599999999999982984699
Q 004479 559 SRKIKEAVNGSSYGRGFVHAALSVNEKVTLIHLEDRPRPGVSDVIAELKDHARLRVMMLTGDHESSAQRVANAVGINEVY 638 (750)
Q Consensus 559 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~G~i~l~D~lr~~~~~aI~~Lk~~~gi~v~mlTGD~~~tA~~iA~~~GI~~v~ 638 (750)
.....+. ....|.+.++++. ++..+|+++++|++||+++++|+.||+ .|++++|+|||+..+|.++|+++||+.++
T Consensus 503 ~~~~~~~--~~~~g~~~~~va~-~~~~~G~i~i~D~~~~~~~~~i~~l~~-~Gi~v~~~TGd~~~~a~~ia~~lgi~~~~ 578 (723)
T 3j09_A 503 VELALEK--LEREAKTAVIVAR-NGRVEGIIAVSDTLKESAKPAVQELKR-MGIKVGMITGDNWRSAEAISRELNLDLVI 578 (723)
T ss_dssp HHHHHHH--HHTTTCEEEEEEE-TTEEEEEEEEECCSCTTHHHHHHHHHH-TTCEEEEECSSCHHHHHHHHHHHTCSEEE
T ss_pred HHHHHHH--HHHCCCEEEEEEE-CCEEEEEEEECCCCCHHHHHHHHHHHH-CCCEEEEECCCCHHHHHHHHHHCCCCEEE
T ss_conf 9999999--9855982899978-999999996068752569999999997-79979999998989999999985993899
Q ss_pred ECCCHHHHHHHHHHHHHHCCCEEEEECCCCCCHHHHHHCCCCEEECCCCCHHHHHHCCEEEECCCCCCHHHHHHHHHHHH
Q ss_conf 51798669999999975049969999599358999983893288499974889863399992699898899999999999
Q 004479 639 CSLKPEDKLNHVKRTSRDMGGGLIMVGEGINDAPALAAATVGIVLAQRASATAIAVADVLLLRNNISGVPFCVAKSRQTT 718 (750)
Q Consensus 639 a~~~Pe~K~~~V~~l~~~~g~~V~mvGDG~NDapAL~~AdVGIamg~~~sd~A~~aaDivL~~d~l~~i~~~i~~~R~~~ 718 (750)
++++|+||.+.|+.++++ +.|+|+|||.||+|||++||+|||||+ |+|.++++||++++++++.+++.++++||+++
T Consensus 579 ~~~~P~~K~~~v~~l~~~--~~v~~vGDg~ND~~al~~A~vgiamg~-g~~~a~~~AD~vl~~~~~~~i~~~i~~~r~~~ 655 (723)
T 3j09_A 579 AEVLPHQKSEEVKKLQAK--EVVAFVGDGINDAPALAQADLGIAVGS-GSDVAVESGDIVLIRDDLRDVVAAIQLSRKTM 655 (723)
T ss_dssp CSCCTTCHHHHHHHHTTT--CCEEEEECSSTTHHHHHHSSEEEECCC-CSCCSSCCSSEECSSCCTTHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHCC--CEEEEEECCHHHHHHHHHCCEEEEECC-CCHHHHHHCCEEEECCCHHHHHHHHHHHHHHH
T ss_conf 268999999999998349--939999898230999954998799678-75999986999996799889999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-------CCCCCCC
Q ss_conf 999999999999999999999850-------0000035
Q 004479 719 SLVKQNVALALSCIILASLPSVLG-------FLPLWLT 749 (750)
Q Consensus 719 ~~i~~ni~~~l~~~~~~~~~~~~G-------~l~~~~a 749 (750)
++++||+.|+++||++++.++++| +++||+|
T Consensus 656 ~~i~~nl~~a~~~n~~~i~~a~~~~~~~~g~~l~p~~a 693 (723)
T 3j09_A 656 SKIKQNIFWALIYNVILIPAAAGLLYPIFGVVFRPEFA 693 (723)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTSSCCCCSCCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHH
T ss_conf 99999999999999999999997565401551488999
No 3
>3j08_A COPA, copper-exporting P-type ATPase A; copper transporter, adenosine triphosph archaeal proteins, cation transport proteins; 10.00A {Archaeoglobus fulgidus}
Probab=1.00 E-value=1 Score=851.49 Aligned_cols=578 Identities=26% Similarity=0.377 Sum_probs=507.7
Q ss_pred HHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH---------
Q ss_conf 99999999996453389998257999999999999719999999999887999948999999999999854---------
Q 004479 114 CAAALFLAAAACPYLLPKPAIKPLQNAFLAVAFPLVGVSASLDALTDIAGGKVNIHVLMAFAAFASIFMGN--------- 184 (750)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~~~l~~~~~~~~~L~~ia~~~s~~~g~--------- 184 (750)
++.++++.+++ . +.|...|++++++++++++.|+||+++||++++++++|||+|+++++.++|+++.
T Consensus 16 ~~~~~~~~~~~-~---~~~~~~~~~~~l~~~~~~~~g~~~~~~a~~~l~~~~~~md~L~~l~~~~a~~~s~~~~~~~~~~ 91 (645)
T 3j08_A 16 AGVLLLFLAHF-I---SLPYEDFVQLLIALPAIFYSGSSIFKAAFSALRRRTLNMDVMYSMGVGAAFLASVLSTAGVLPR 91 (645)
T ss_dssp SHHHHHHHTTT-C---CSCCCSSSCCCTHHHHHHHHHHHHHHHTCCTTTTCSGGGCCCCSCHHHHHHHHHHHHHHHHCCS
T ss_pred HHHHHHHHHHH-H---HCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 99999999987-4---3415799999999999999999999999999974899928999999999999999999863356
Q ss_pred ---HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCEEEEECCCCCCCCEEEECC
Q ss_conf ---68-89999999997778999999899999999863199931999728999987678717998368757799999837
Q 004479 185 ---SL-EGGLLLAMFNLAHIAEEFFTSRAMVDVKELKENYPDSVLVLNVDDDNLPDVSDLAYRSVPVHDVEVGSYILVGA 260 (750)
Q Consensus 185 ---~~-~~~~i~~~~~l~~~~~~~~~~rs~~~l~~L~~~~p~~a~v~r~~~~~~~~~~~~~~~~V~~~~l~vGDiI~i~~ 260 (750)
|+ +++++++++.++.++|.++++|+++.+++|.++.|++++|+|+| ++++|+++||+|||+|.|++
T Consensus 92 ~~~~~~~~~~i~~~~~ig~~le~~~~~~~~~~l~~l~~l~~~~a~v~r~g----------~~~~i~~~~l~~GDiv~v~~ 161 (645)
T 3j08_A 92 EYSFYETSVLLLAFLLLGRTLEARAKSRTGEAIKKLVGLQAKTAVVIRDG----------KEIAVPVEEVAVGDIVIVRP 161 (645)
T ss_dssp CSSCCCSHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHTSCSEEEEEETT----------EEEEEEGGGCCTTCEEEECT
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECC----------EEEEEEHHHCCCCCEEEECC
T ss_conf 32599999999999999999999999999999999861799979999999----------79998899979899999889
Q ss_pred CCCCCCCCEEEECEEEEEECCCCCCCCEEEECCCCCCCCCCEECCEEEEEEEEEECCCCHHHHHHHHHHHHHCCCCHHHH
Q ss_conf 97226572899610246303656986608511588547874000406999999753332899999999996108964589
Q 004479 261 GEAVPVDCEVYQGTATITIEHLTGEVKPLEAKVGDRIPGGARNLDGRMILKATKTWNESTLNRIVQLTEEAQLNKPKLQR 340 (750)
Q Consensus 261 Ge~VPaDg~vi~G~~~Vdes~lTGEs~pv~k~~g~~v~aGt~~~~G~~~v~v~~~g~~T~~~~i~~l~~~a~~~k~~~q~ 340 (750)
||+|||||++++|++.||||+|||||.|+.|++|+.+|+||.|.+|.++++|+++|.+|.+++|.+++++++.+|+|+|+
T Consensus 162 Ge~IPaDg~vl~G~~~VdeS~LTGES~Pv~K~~g~~v~~Gt~~~~g~~~~~v~~~G~~T~l~~i~~lv~~a~~~k~~~~~ 241 (645)
T 3j08_A 162 GEKIPVDGVVVEGESYVDESMISGEPVPVLKSKGDEVFGATINNTGVLKIRATRVGGETLLAQIVKLVEDAMGSKPPIQR 241 (645)
T ss_dssp TCBCCSEEEEEECCEEEECHHHHCCSSCEEECTTCEECTTCEECSSCEEEEEEECGGGSHHHHHHHHHSCCCCCCCSHHH
T ss_pred CCEEEEEEEEEECCEEEECCCCCCCCCCEECCCCCEEECCEEEECCCEEEEEEECCCCCHHHHHHHHHHHHHCCCCHHHH
T ss_conf 99886689999886899802246998765608999741667982572999999727745999999999973146985899
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHCCCCCC
Q ss_conf 999998577799999999999985343331012564035689999999996621114269-9999999999987394103
Q 004479 341 WLDEFGEQYSKVVVVLSLAIALIGPFLFKWSFIGTSVCRGSVYRALGLMVAASPCALAVA-PLAYATAISSCARKGILLK 419 (750)
Q Consensus 341 ~~~~~a~~~~~~~l~~a~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~vlv~~~P~aL~la-p~a~~~a~~~~~~~gilvk 419 (750)
.+|+++.+|+++++++++++++ .|.+.....+..++.+++++++++|||+|+++ |+++..++.+++++|+++|
T Consensus 242 ~~d~~~~~~~~~vl~~a~~~~~------~~~~~~~~~~~~~~~~~i~vlvia~P~aL~la~p~a~~~~~~~~a~~gilvk 315 (645)
T 3j08_A 242 LADKVVAYFIPTVLLVAISAFI------YWYFIAHAPLLFAFTTLIAVLVVACPCAFGLATPTALTVGMGKGAELGILIK 315 (645)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH------CSSCCCSCSCCCTTTTTHHHHHHHSCTTHHHHHHHHHHHHHHHHHTTCCCCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHH------HHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEC
T ss_conf 9999999999999999999999------9999569869999999999999873668999999999999999997793766
Q ss_pred CCHHHHHHCCCCEEEECCCCCCCCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHH
Q ss_conf 71477741045689985889786794289999713773113677666655787538999999999851899944789984
Q 004479 420 GGQVLDALASCHTIAFDKTGTLTTGGLMFKAIEPIYGHWIRSKKTHDISCCIPNCEKEALAVAAAMEKGTTHPIGRAVVD 499 (750)
Q Consensus 420 ~~~~lE~L~~v~~i~fDKTGTLT~g~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aa~~e~~s~hp~~~Ai~~ 499 (750)
+++++|.||+++++|||||||||+|+|++.++.+.+.. +++.+.+++++|.+++||+++|+++
T Consensus 316 ~~~~lE~lg~v~~i~fDKTGTLT~~~~~v~~~~~~~~~-----------------~~~~l~~aa~~e~~s~hPla~Aiv~ 378 (645)
T 3j08_A 316 NADALEVAEKVTAVIFDKTGTLTKGKPEVTDLVPLNGD-----------------ERELLRLAAIAERRSEHPIAEAIVK 378 (645)
T ss_dssp STTHHHHGGGCCEEEEEGGGTSSSSCCEEEEEEESSSC-----------------HHHHHHHHHHHHTTCCSHHHHHHHH
T ss_pred CCHHHHHHHCCCEEEECCCCCCCCCCEEEEEEEECCCC-----------------HHHHHHHHHHHHHCCCCHHHHHHHH
T ss_conf 81699986279999986866655897079999817999-----------------7999999999751588746799999
Q ss_pred HHCCCCCCCCCCCCEEEECCCEEEEEEECEEECCCCCCEEEECCCCHHHHHHHCCCH-HHHHHHHHHHCCCCCCCCEEEE
Q ss_conf 211799998655652565597479999284623689713454158657884203682-6899999985036789718999
Q 004479 500 HSIGKDLPSVSIDRFEYFPGRGLTATVNGIESGTEGGKELKASLGSVDFITSLCKSE-DESRKIKEAVNGSSYGRGFVHA 578 (750)
Q Consensus 500 ~~~~~~~~~~~~~~f~~~~g~g~~~~v~~~~~~~~~~~~~~~~kGa~~~i~~~~~~~-~~~~~~~~~~~~~~~~~~~v~~ 578 (750)
++...+.+.....+|++.+|+|+.+ . .+.+|+++++.+..... .......+.. ...+.+.+++
T Consensus 379 ~a~~~g~~~~~~~~~~~~~g~g~~~---~-----------~v~~g~~~~~~~~~~~~~~~~~~~~~~~--~~~g~~~l~v 442 (645)
T 3j08_A 379 KALEHGIELGEPEKVEVIAGEGVVA---D-----------GILVGNKRLMEDFGVAVSNEVELALEKL--EREAKTAVIV 442 (645)
T ss_dssp HHHHTTCCCCSCCCCEEETTTEEEE---T-----------TEEEECHHHHHHTTCCCCHHHHHHHHHH--HTTTCCCEEE
T ss_pred HHHHCCCCCCCCCCEEEECCCCEEE---E-----------EEEECCHHHHHHCCCCCCHHHHHHHHHH--HHCCCEEEEE
T ss_conf 9996599867865359965884699---9-----------9998879999754987518899999999--8559838999
Q ss_pred EECCCCEEEEEEECCCCCHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHCCCCEEEECCCHHHHHHHHHHHHHHCC
Q ss_conf 61059417999941899440899999999629969999359999999999998298469951798669999999975049
Q 004479 579 ALSVNEKVTLIHLEDRPRPGVSDVIAELKDHARLRVMMLTGDHESSAQRVANAVGINEVYCSLKPEDKLNHVKRTSRDMG 658 (750)
Q Consensus 579 ~~~~~~~~G~i~l~D~lr~~~~~aI~~Lk~~~gi~v~mlTGD~~~tA~~iA~~~GI~~v~a~~~Pe~K~~~V~~l~~~~g 658 (750)
+. ++..+|+++++|++||+++++|++||+ .|++++|+|||+..+|.++++++||+.+|++++|+||.+.|+.++++
T Consensus 443 a~-~~~~~G~i~~~D~l~~~~~~~i~~L~~-~Gi~v~~~TGd~~~~a~~ia~~lgi~~~~~~~~P~~K~~~v~~l~~~-- 518 (645)
T 3j08_A 443 AR-NGRVEGIIAVSDTLKESAKPAVQELKR-MGIKVGMITGDNWRSAEAISRELNLDLVIAEVLPHQKSEEVKKLQAK-- 518 (645)
T ss_dssp EE-TTEEEEEEEEECCCTTTHHHHHHHHHH-TTCEEEEECSSCHHHHHHHHHHHTCSEEECSCCTTCHHHHHHHHTTT--
T ss_pred EE-CCEEEEEEEECCCCHHHHHHHHHHHHH-CCCEEEEEECCCHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHC--
T ss_conf 88-999999999348765679999999997-79979999088879999999983997899837877689999998609--
Q ss_pred CEEEEECCCCCCHHHHHHCCCCEEECCCCCHHHHHHCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 96999959935899998389328849997488986339999269989889999999999999999999999999999999
Q 004479 659 GGLIMVGEGINDAPALAAATVGIVLAQRASATAIAVADVLLLRNNISGVPFCVAKSRQTTSLVKQNVALALSCIILASLP 738 (750)
Q Consensus 659 ~~V~mvGDG~NDapAL~~AdVGIamg~~~sd~A~~aaDivL~~d~l~~i~~~i~~~R~~~~~i~~ni~~~l~~~~~~~~~ 738 (750)
+.|+|+|||.||+|||++||+||+||+ |+|.++++||++++++++.++++++++||+++++++||+.|+++||++++.+
T Consensus 519 ~~v~~vGDg~ND~~al~~A~vgiamg~-g~~~a~~~AD~vl~~~~~~~i~~~i~~~r~~~~~i~~nl~~a~~~N~~~i~l 597 (645)
T 3j08_A 519 EVVAFVGDGINDAPALAQADLGIAVGS-GSDVAVESGDIVLIRDDLRDVVAAIQLSRKTMSKIKQNIFWALIYNVILIPA 597 (645)
T ss_dssp CCEEEEECSSSCHHHHHHSSEEEEECC-CSCCSSCCSSSEESSCCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CEEEEEECCHHHHHHHHHCCEEEEECC-CCHHHHHHCCEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 959999697768999975998899488-7599998699999369988999999999999999999999999999999999
Q ss_pred HHHH-------CCCCCCC
Q ss_conf 9850-------0000035
Q 004479 739 SVLG-------FLPLWLT 749 (750)
Q Consensus 739 ~~~G-------~l~~~~a 749 (750)
+++| +++||+|
T Consensus 598 a~~~~~~~~g~~l~p~~a 615 (645)
T 3j08_A 598 AAGLLYPIFGVVFRPEFA 615 (645)
T ss_dssp HTTTTTTTCCCSCCHHHH
T ss_pred HHHHHHHHCCCCCCHHHH
T ss_conf 998676510353389999
No 4
>1mhs_A Proton pump, plasma membrane ATPase; ION transport, membrane protein, P-type ATPase, active transport, cryo-electron microscopy; 8.00A {Neurospora crassa} SCOP: i.18.1.1
Probab=1.00 E-value=1 Score=790.67 Aligned_cols=526 Identities=20% Similarity=0.257 Sum_probs=441.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCEEEEECC
Q ss_conf 89999999999998546889999999997778999999899999999863199931999728999987678717998368
Q 004479 169 HVLMAFAAFASIFMGNSLEGGLLLAMFNLAHIAEEFFTSRAMVDVKELKENYPDSVLVLNVDDDNLPDVSDLAYRSVPVH 248 (750)
Q Consensus 169 ~~L~~ia~~~s~~~g~~~~~~~i~~~~~l~~~~~~~~~~rs~~~l~~L~~~~p~~a~v~r~~~~~~~~~~~~~~~~V~~~ 248 (750)
.+++.+++++++++|+|.+++++++++.++..++.++++|+.+.+++|.++.|.+++|+|+| ++++|+++
T Consensus 125 ~~ll~~aai~s~~~g~~~~~~~i~~vv~i~~~i~~~qe~~a~~a~~~L~~l~~~~a~V~RdG----------~~~~I~~~ 194 (920)
T 1mhs_A 125 QFVMEGAAVLAAGLEDWVDFGVICGLLLLNAVVGFVQEFQAGSIVDELKKTLALKAVVLRDG----------TLKEIEAP 194 (920)
T ss_dssp HHHHHHHHHHCTTCSCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCCCSSCEEECSS----------SEEECCTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECC----------EEEEEEHH
T ss_conf 99999999999999768999999999999999999999999999998633599879999899----------89998989
Q ss_pred CCCCCCEEEECCCCCCCCCCEEEECEE--EEEECCCCCCCCEEEECCCCCCCCCCEECCEEEEEEEEEECCCCHHHHHHH
Q ss_conf 757799999837972265728996102--463036569866085115885478740004069999997533328999999
Q 004479 249 DVEVGSYILVGAGEAVPVDCEVYQGTA--TITIEHLTGEVKPLEAKVGDRIPGGARNLDGRMILKATKTWNESTLNRIVQ 326 (750)
Q Consensus 249 ~l~vGDiI~i~~Ge~VPaDg~vi~G~~--~Vdes~lTGEs~pv~k~~g~~v~aGt~~~~G~~~v~v~~~g~~T~~~~i~~ 326 (750)
+|+|||+|.+++||+|||||++++|++ .||||+|||||.|+.|.+|+.+|+||.+.+|.+.++|+++|.+|.+++|.+
T Consensus 195 eLv~GDiV~l~~Gd~VPaDg~ll~g~~~l~VDES~LTGES~PV~K~~gd~v~sGT~v~~G~~~~~V~~tG~~T~~g~I~~ 274 (920)
T 1mhs_A 195 EVVPGDILQVEEGTIIPADGRIVTDDAFLQVDQSALTGESLAVDKHKGDQVFASSAVKRGEAFVVITATGDNTFVGRAAA 274 (920)
T ss_dssp TSCTTSEEEECTTCBCSSEEEEEEESSCCEEBCTTTSSCCCCEECCSSCEECSCBCCSCCCEEEEEEECSTTCSTTTTTS
T ss_pred HCCCCCEEEECCCCCCCCCEEEEECCCEEEEECCCCCCCCCCEEECCCCEEECCCEEECCEEEEEEEEECCCCHHHHHHH
T ss_conf 95889789967797336656999457223202222478886469347986303766951359999999577678889988
Q ss_pred HHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH-HHHHH
Q ss_conf 99996108964589999998577799999999999985343331012564035689999999996621114269-99999
Q 004479 327 LTEEAQLNKPKLQRWLDEFGEQYSKVVVVLSLAIALIGPFLFKWSFIGTSVCRGSVYRALGLMVAASPCALAVA-PLAYA 405 (750)
Q Consensus 327 l~~~a~~~k~~~q~~~~~~a~~~~~~~l~~a~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~vlv~~~P~aL~la-p~a~~ 405 (750)
++++++..++|+|+.+++++.++.++++++++++++ .|.+ ....+...+..++++++++|||+|+++ |+++.
T Consensus 275 lv~~a~~~~~~l~~~~~~i~~~l~~~~~~~~~i~~~------~~~~-~~~~~~~~l~~av~llV~aiP~aLp~~vti~la 347 (920)
T 1mhs_A 275 LVNAASGGSGHFTEVLNGIGTILLILVIFTLLIVWV------SSFY-RSNPIVQILEFTLAITIIGVPVGLPAVVTTTMA 347 (920)
T ss_dssp SCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH------TTTT-TTCCHHHHHHHHHHHHHHHSCCCHHHHHHHHHH
T ss_pred HHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHH-CCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_conf 776424677649999999999999999999999999------9884-688699999999999987676037777899999
Q ss_pred HHHHHHHHCCCCCCCCHHHHHHCCCCEEEECCCCCCCCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHH-H
Q ss_conf 999999873941037147774104568998588978679428999971377311367766665578753899999999-9
Q 004479 406 TAISSCARKGILLKGGQVLDALASCHTIAFDKTGTLTTGGLMFKAIEPIYGHWIRSKKTHDISCCIPNCEKEALAVAA-A 484 (750)
Q Consensus 406 ~a~~~~~~~gilvk~~~~lE~L~~v~~i~fDKTGTLT~g~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aa-~ 484 (750)
.++.+++|+|+++|++.++|+||++++||||||||||+|+|+|.++++..+.. +++++..++ +
T Consensus 348 ~g~~~mak~~ilvk~~~aiE~Lg~v~vIc~DKTGTLT~n~m~v~~~~~~~g~~----------------~~~ll~~a~l~ 411 (920)
T 1mhs_A 348 VGAAYLAKKKAIVQKLSAIESLAGVEILCSDKTGTLTKNKLSLHDPYTVAGVD----------------PEDLMLTACLA 411 (920)
T ss_dssp HHHHHHHHTTCCCCCTTTHHHHHTCCEEEEETBTTTBSSCSCCCCCBCCSCCC----------------CTHHHHHHHHS
T ss_pred HHHHHHHHCCEEEECCCHHHHHCCCCEEEECCCCCCCCCCEEEEEEEECCCCC----------------HHHHHHHHHHH
T ss_conf 99999986883870571355543676899778887555531699985069989----------------89999999985
Q ss_pred HHCCCC--CCHHHHHHHHHCCCCC-----C-CCCCCCEEEEC-CCEEEEEEECEEECCCCCCEEEECCCCHHHHHHHCCC
Q ss_conf 851899--9447899842117999-----9-86556525655-9747999928462368971345415865788420368
Q 004479 485 MEKGTT--HPIGRAVVDHSIGKDL-----P-SVSIDRFEYFP-GRGLTATVNGIESGTEGGKELKASLGSVDFITSLCKS 555 (750)
Q Consensus 485 ~e~~s~--hp~~~Ai~~~~~~~~~-----~-~~~~~~f~~~~-g~g~~~~v~~~~~~~~~~~~~~~~kGa~~~i~~~~~~ 555 (750)
.+..+. ||++.|+++++...+. . ......+++.+ ++++.+.+.. .+++.+.++||+|+++.++|..
T Consensus 412 ~~~~~~~~~P~e~Al~~~~~~~~~~~~~~~~~~~~~~~pF~s~~k~ms~iv~~-----~~g~~~~~~KGape~il~~c~~ 486 (920)
T 1mhs_A 412 ASRKKKGIDAIDKAFLKSLKYYPRAKSVLSKYKVLQFHPFDPVSKKVVAVVES-----PQGERITCVKGAPLFVLKTVEE 486 (920)
T ss_dssp CCCSSCSCCSHHHHHHHHHHHSSSCCGGGSCCCEEEEEEEETTTTEEEEEECC-----SSSSCEEEEEECHHHHHHHCCC
T ss_pred CCCCCCCCCHHHHHHHHHHHHCCCCHHHCCCCCEEEEEECCCCCCEEEEEEEE-----CCCCEEEEEECCHHHHHHHCCC
T ss_conf 47766689858999999999646310101355335786116778859999996-----7991899990879999986135
Q ss_pred H-----HHHHHHHHH-HCCCCCCCCEEEEEECCC----CEEEEEEECCCCCHHHHHHHHHHHHCCCCEEEEECCCCHHHH
Q ss_conf 2-----689999998-503678971899961059----417999941899440899999999629969999359999999
Q 004479 556 E-----DESRKIKEA-VNGSSYGRGFVHAALSVN----EKVTLIHLEDRPRPGVSDVIAELKDHARLRVMMLTGDHESSA 625 (750)
Q Consensus 556 ~-----~~~~~~~~~-~~~~~~~~~~v~~~~~~~----~~~G~i~l~D~lr~~~~~aI~~Lk~~~gi~v~mlTGD~~~tA 625 (750)
. ...+.+.+. ......|.+++.++...+ ..+|+++++||+||+++++|++||+ +|++++|+||||+.||
T Consensus 487 ~~~~~~~~~~~~~~~~~~~a~~G~RvL~vA~~~~e~~l~~lGli~i~Dp~R~ea~~aI~~l~~-aGI~v~MiTGD~~~TA 565 (920)
T 1mhs_A 487 DHPIPEEVDQAYKNKVAEFATRGFRSLGVARKRGEGSWEILGIMPCMDPPRHDTYKTVCEAKT-LGLSIKMLTGDAVGIA 565 (920)
T ss_dssp SSCCCHHHHHHHHHHHHHHHTSSCCCCEECCCSSSCSCCCCBBCCCCCCCCHHHHHHHHHHHH-HTCEEEEEESSCHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHCCCEEEEEEEECCCCCCEEEEEEEEECCCCCCHHHHHHHHHH-CCCEEEEECCCCHHHH
T ss_conf 678987889989999999986799799999832665307889999734321017999999862-5744999838978999
Q ss_pred HHHHHHCCCC-----------------------------EEEECCCHHHHHHHHHHHHHHCCCEEEEECCCCCCHHHHHH
Q ss_conf 9999982984-----------------------------69951798669999999975049969999599358999983
Q 004479 626 QRVANAVGIN-----------------------------EVYCSLKPEDKLNHVKRTSRDMGGGLIMVGEGINDAPALAA 676 (750)
Q Consensus 626 ~~iA~~~GI~-----------------------------~v~a~~~Pe~K~~~V~~l~~~~g~~V~mvGDG~NDapAL~~ 676 (750)
.+||+++||. .+|+|++|+||.++|+.+|++ |+.|+|+|||+||+|||++
T Consensus 566 ~aIA~~lGI~~~~~~~~~~~~~g~~~~~~~el~~~~~~~~V~arv~P~~K~~iV~~Lq~~-g~~Vam~GDGvNDapaLk~ 644 (920)
T 1mhs_A 566 RETSRQLGLGTNIYNAERLGLGGGGDMPGSEVYDFVEAADGFAEVFPQHKYNVVEILQQR-GYLVAMTGDGVNDAPSLKK 644 (920)
T ss_dssp HHHHHHHTSSCSCCCSSSSSSCBCCCGGGGGGGTTTTTTSCEESCCSTHHHHHHHHHHTT-TCCCEECCCCGGGHHHHHH
T ss_pred HHHHHHCCCCCCCCCCCCEEECCCCCCCHHHHHHHHHHCEEEEEECHHHHHHHHHHHHHC-CCEEEEECCCCCCHHHHHH
T ss_conf 999998499965467541242276558989999877518199983799999999999967-9969998288100999985
Q ss_pred CCCCEEECCCCCHHHHHHCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 89328849997488986339999269989889999999999999999999999999999
Q 004479 677 ATVGIVLAQRASATAIAVADVLLLRNNISGVPFCVAKSRQTTSLVKQNVALALSCIILA 735 (750)
Q Consensus 677 AdVGIamg~~~sd~A~~aaDivL~~d~l~~i~~~i~~~R~~~~~i~~ni~~~l~~~~~~ 735 (750)
||||||||+ |+|+|+++||+++++|+|++++.++++||++++|++|++.|.++.|+..
T Consensus 645 AdvGIAmg~-gtd~ak~aADiVl~~~~~~~I~~ai~~gR~~~~ni~k~i~~~l~~n~~~ 702 (920)
T 1mhs_A 645 ADTGIAVEG-SSDAARSAADIVFLAPGLGAIIDALKTSRQIFHRMYAYVVYRIALSIHL 702 (920)
T ss_dssp SSEEEEETT-SCHHHHHSSSEEESSCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCC-CCHHHHHHCCEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 786740564-3399998468077679777899999999999999999878897999999
No 5
>3b8c_A ATPase 2, plasma membrane-type; P-type ATPase, proton pump, ATP-binding, hydrogen ION transport, hydrolase, ION transport; HET: ACP; 3.60A {Arabidopsis thaliana}
Probab=1.00 E-value=1 Score=782.60 Aligned_cols=525 Identities=21% Similarity=0.265 Sum_probs=432.8
Q ss_pred HHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCE
Q ss_conf 99999999999985-------46889999999997778999999899999999863199931999728999987678717
Q 004479 170 VLMAFAAFASIFMG-------NSLEGGLLLAMFNLAHIAEEFFTSRAMVDVKELKENYPDSVLVLNVDDDNLPDVSDLAY 242 (750)
Q Consensus 170 ~L~~ia~~~s~~~g-------~~~~~~~i~~~~~l~~~~~~~~~~rs~~~l~~L~~~~p~~a~v~r~~~~~~~~~~~~~~ 242 (750)
.++.++++.+++.+ +|.++..+++++.++..++.++++|+.+.+++|+++.|.+++|+|+| ++
T Consensus 71 ~il~~aaiis~~l~~~~~~~~~~~~~~~I~~~v~i~~~l~~~qe~ka~~al~~L~~~~~~~a~V~RdG----------~~ 140 (885)
T 3b8c_A 71 WVMEMAAIMAIALANGDGRPPDWQDFVGIICLLVINSTISFIEENNAGNAAAALMAGLAPKTKVLRDG----------KW 140 (885)
T ss_dssp SHHHHHHHGGGGSSCCTTSCSCCTTHHHHHHHTTTTTTTTTTTTTTTTTHHHHTTTSCSCCCCCCCSS----------CS
T ss_pred HHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECC----------EE
T ss_conf 99999999999997045663018899999999999999999999999999999733499869999999----------89
Q ss_pred EEEECCCCCCCCEEEECCCCCCCCCCEEEECEE-EEEECCCCCCCCEEEECCCCCCCCCCEECCEEEEEEEEEECCCCHH
Q ss_conf 998368757799999837972265728996102-4630365698660851158854787400040699999975333289
Q 004479 243 RSVPVHDVEVGSYILVGAGEAVPVDCEVYQGTA-TITIEHLTGEVKPLEAKVGDRIPGGARNLDGRMILKATKTWNESTL 321 (750)
Q Consensus 243 ~~V~~~~l~vGDiI~i~~Ge~VPaDg~vi~G~~-~Vdes~lTGEs~pv~k~~g~~v~aGt~~~~G~~~v~v~~~g~~T~~ 321 (750)
++|++++|+|||+|.+++||+|||||++++|++ .||||+|||||.|+.|.+|+.+|+||.+.+|.++++|+++|.+|.+
T Consensus 141 ~~I~~~~Lv~GDiV~l~~Gd~IPaDg~ll~g~~l~VdES~LTGES~Pv~K~~g~~v~~GT~v~~G~~~~~V~~tG~~T~~ 220 (885)
T 3b8c_A 141 SEQEAAILVPGDIVSIKLGDIIPADARLLEGDPLKVDQSALTGESLPVTKHPGQEVFSGSTCKQGEIEAVVIATGVHTFF 220 (885)
T ss_dssp CCCCTTTTCTTSBCCCCSSCCCSSCCCCCCSSCBCCCCCSTTCCSSCCCBSSCCCCCSCCCCCSCCCCCBCCSCTTTTTS
T ss_pred EEEEHHHCCCCCEEEECCCCEEEECEEEEECCCCCCCCCCCCCCCCCEEECCCCCCCCCEEEEEEEEEEEEEECCCCCHH
T ss_conf 99898997989789988999993035999767540034446888864583489830267599511799999975730199
Q ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9999999996108964589999998577799999-999999985343331012564035689999999996621114269
Q 004479 322 NRIVQLTEEAQLNKPKLQRWLDEFGEQYSKVVVV-LSLAIALIGPFLFKWSFIGTSVCRGSVYRALGLMVAASPCALAVA 400 (750)
Q Consensus 322 ~~i~~l~~~a~~~k~~~q~~~~~~a~~~~~~~l~-~a~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~vlv~~~P~aL~la 400 (750)
++|.+++++ +..++|+|+.++++++++...+.+ +++++ +..|.+. ..++..++..++++++++|||+|+++
T Consensus 221 g~i~~lv~~-~~~~~~lq~~~~~i~~~~~~~~~~~~~~~~------~~~~~~~-~~~~~~~~~~~v~llv~aiP~aLp~~ 292 (885)
T 3b8c_A 221 GKAAHLVDS-TNQVGHFQKVLTAIGNFCICSIAIGMVIEI------IVMYPIQ-RRKYRDGIDNLLVLLIGGIPIAMPTV 292 (885)
T ss_dssp TTCCCSCCS-CSCCSTTTTTTHHHHHHHHHHHHHHHHHHS------TTTTTTT-CSCSTTHHHHHHHHTTTTCCSSTTTH
T ss_pred HHHHHHHHC-CCCCCHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHC-CCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 999999864-644684999999999999999999999999------9999980-68699999999999999703689999
Q ss_pred -HHHHHHHHHHHHHCCCCCCCCHHHHHHCCCCEEEECCCCCCCCCCEEEEEEE-ECCCCCCCCCCCCCCCCCCCCCHHHH
Q ss_conf -9999999999987394103714777410456899858897867942899997-13773113677666655787538999
Q 004479 401 -PLAYATAISSCARKGILLKGGQVLDALASCHTIAFDKTGTLTTGGLMFKAIE-PIYGHWIRSKKTHDISCCIPNCEKEA 478 (750)
Q Consensus 401 -p~a~~~a~~~~~~~gilvk~~~~lE~L~~v~~i~fDKTGTLT~g~~~v~~i~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 478 (750)
|+++..++.+++|+|+++|++.++|+||++++||||||||||+|+|+|.+.. ...+. ...++++
T Consensus 293 vti~la~g~~r~ak~~ilvk~~~aiE~Lg~v~~Ic~DKTGTLT~n~m~v~~~~~~~~~~--------------~~~~~~l 358 (885)
T 3b8c_A 293 LSVTMAIGSHRLSQQGAITKRMTAIEEMAGMDVLCSDKTGTLTLNKLSVDKNLVEVFCK--------------GVEKDQV 358 (885)
T ss_dssp HHHTTTHHHHHHTTTSCCCSSGGGHHHHTTCCCCEEECCCCCSCCCCCCCSCCCCSSCS--------------STTHHHH
T ss_pred HHHHHHHHHHHHHHCCEEECCCHHHHHHHCCCEEEECCCCCCCCCCEEEEEEEEECCCC--------------CCCHHHH
T ss_conf 99999999999971986968951888976799899879987616852799877751589--------------9999999
Q ss_pred HHHHHHHHCC-CCCCHHHHHHHHHCCC-----CCCCCCCCCEEEECCCEEEEEEECEEECCCCCCEEEECCCCHHHHHHH
Q ss_conf 9999998518-9994478998421179-----999865565256559747999928462368971345415865788420
Q 004479 479 LAVAAAMEKG-TTHPIGRAVVDHSIGK-----DLPSVSIDRFEYFPGRGLTATVNGIESGTEGGKELKASLGSVDFITSL 552 (750)
Q Consensus 479 l~~aa~~e~~-s~hp~~~Ai~~~~~~~-----~~~~~~~~~f~~~~g~g~~~~v~~~~~~~~~~~~~~~~kGa~~~i~~~ 552 (750)
+.+++.++.. +.||++.|++.++... +++. +..+.+.+.++.++++... .+++.+.++||+|+.+.++
T Consensus 359 l~~aa~~~~~~~~~p~~~Al~~~~~~~~~~~~~~~~--~~~~pF~s~~k~~sv~~~~----~~g~~~~~~KGa~e~il~~ 432 (885)
T 3b8c_A 359 LLFAAMASRVENQDAIDAAMVGMLADPKEARAGIRE--VHFLPFNPVDKRTALTYID----GSGNWHRVSKGAPEQILEL 432 (885)
T ss_dssp HHHHHHHCCSSSCCSHHHHHHHTTCCTTCCCCSSCC--BCCCCCCTTTCCCCCBBCS----SSSCBCBCCCCSGGGTSSS
T ss_pred HHHHHHHHCCCCCCCHHHHHHHHHHCHHHHHHCCCE--EECCCCCCCCCEEEEEEEE----CCCCEEEEEECCHHHHHHH
T ss_conf 999999727889991589999986463657624832--2013578522568999980----4896899994889999976
Q ss_pred CCCHHH-HHHHHHH-HCCCCCCCCEEEEEECC---------C---CEEEEEEECCCCCHHHHHHHHHHHHCCCCEEEEEC
Q ss_conf 368268-9999998-50367897189996105---------9---41799994189944089999999962996999935
Q 004479 553 CKSEDE-SRKIKEA-VNGSSYGRGFVHAALSV---------N---EKVTLIHLEDRPRPGVSDVIAELKDHARLRVMMLT 618 (750)
Q Consensus 553 ~~~~~~-~~~~~~~-~~~~~~~~~~v~~~~~~---------~---~~~G~i~l~D~lr~~~~~aI~~Lk~~~gi~v~mlT 618 (750)
|..... .+.+.+. ......|.+++.++... + ..+|+++++||+||+++++|++||+ +|++++|+|
T Consensus 433 c~~~~~~~~~~~~~~~~~a~~G~rvl~vA~~~~~~~~~~~~e~~l~~lGli~i~Dp~R~~a~~aI~~l~~-aGI~v~MiT 511 (885)
T 3b8c_A 433 AKASNDLSKKVLSIIDKYAERGLRSLAVARQVVPEKTKESPGAPWEFVGLLPLFDPPRHDSAETIRRALN-LGVNVKMIT 511 (885)
T ss_dssp SCCCSTTTTTHHHHHHHHTTTTCEEEEECCBCCCSSSSSCCCCCCCCCEEEEECCCCCHHHHHHHHHHHH-TTCCCEEEE
T ss_pred CCCCHHHHHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCCCCCCCEEEEEEEEECCCCHHHHHHHHHHHH-CCCCEEEEC
T ss_conf 4586445799999999998579869999994466433111356757999999606661208999999997-699689993
Q ss_pred CCCHHHHHHHHHHCCCC------------------------------EEEECCCHHHHHHHHHHHHHHCCCEEEEECCCC
Q ss_conf 99999999999982984------------------------------699517986699999999750499699995993
Q 004479 619 GDHESSAQRVANAVGIN------------------------------EVYCSLKPEDKLNHVKRTSRDMGGGLIMVGEGI 668 (750)
Q Consensus 619 GD~~~tA~~iA~~~GI~------------------------------~v~a~~~Pe~K~~~V~~l~~~~g~~V~mvGDG~ 668 (750)
|||+.||.++|+++||. .+|+|++|+||.++|+.+|++ |+.|+|+|||+
T Consensus 512 GD~~~tA~~iA~~lGi~~~~~~~~~l~g~~~~~~~~~~~l~~~~~~~~v~arv~P~~K~~iV~~lq~~-g~~Vam~GDGv 590 (885)
T 3b8c_A 512 GDQLAIGKETGRRLGMGTNMYPSSALLGTHKDANLASIPVEELIEKADGFAGVFPEHKYEIVKKLQER-KHIVGMTGDGV 590 (885)
T ss_dssp SSCHHHHTHHHHTTTCTTCCSTTSSCCBGGGGTTSCCSCHHHHHHTSCCEECCCHHHHHHHHHHHHHT-TCCCCBCCCSS
T ss_pred CCCHHHHHHHHHHHCCCCCCCCCCEEECCCCCCCCCHHHHHHHHHHCCEEEEECHHHHHHHHHHHHHC-CCEEEEECCCC
T ss_conf 99869999999980976466775144555312224635799998638689887899999999999977-99699975981
Q ss_pred CCHHHHHHCCCCEEECCCCCHHHHHHCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 5899998389328849997488986339999269989889999999999999999999999999999
Q 004479 669 NDAPALAAATVGIVLAQRASATAIAVADVLLLRNNISGVPFCVAKSRQTTSLVKQNVALALSCIILA 735 (750)
Q Consensus 669 NDapAL~~AdVGIamg~~~sd~A~~aaDivL~~d~l~~i~~~i~~~R~~~~~i~~ni~~~l~~~~~~ 735 (750)
||+|||++||||||||+ |+|+|+++||+++++|+|++++.++++||++++||+||+.|++++|+..
T Consensus 591 NDapaLk~AdvGIAmg~-gtd~ak~aADivl~~~~~~~I~~ai~~gR~~~~ni~~~i~~~l~~n~~~ 656 (885)
T 3b8c_A 591 NDAPALKKADIGIAVAD-ATDAARGASDIVLTEPGLSVIISAVLTSRAIFQRMKNYTIYAVSITIRI 656 (885)
T ss_dssp TTHHHHHHSSSCCCCSS-SHHHHGGGCSSCCSSCSHHHHTHHHHTHHHHHHHHHHHHHHHHHHTTTT
T ss_pred HHHHHHHHCCEEEEECC-CCHHHHHHCCEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 22999986997599577-1299998434013357666899999999999999999999999999999
No 6
>2zxe_A Na, K-ATPase alpha subunit; membrane protein, ION pump, ATPase, K+ binding, haloacid dehydrogenease superfamily, phosphate analogue; HET: CLR NAG NDG; 2.40A {Squalus acanthias} PDB: 3a3y_A* 3b8e_A* 3kdp_A* 3n2f_A* 3n23_A* 1mo7_A 1mo8_A* 1q3i_A
Probab=1.00 E-value=1 Score=750.79 Aligned_cols=549 Identities=21% Similarity=0.267 Sum_probs=436.7
Q ss_pred HHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCC
Q ss_conf 89999999999998-------------54688999999999777899999989999999986319993199972899998
Q 004479 169 HVLMAFAAFASIFM-------------GNSLEGGLLLAMFNLAHIAEEFFTSRAMVDVKELKENYPDSVLVLNVDDDNLP 235 (750)
Q Consensus 169 ~~L~~ia~~~s~~~-------------g~~~~~~~i~~~~~l~~~~~~~~~~rs~~~l~~L~~~~p~~a~v~r~~~~~~~ 235 (750)
..++.++++.+++. ++|+++..+++++.+...++.+++.|+.+.+++|.++.|.+++|+|+|
T Consensus 106 ~~iL~~aa~ls~~~~~~~~~~~~~~~~~~~~~~~~i~~vv~i~~~~~~~qe~ka~~~~~~L~~l~~~~a~V~Rdg----- 180 (1028)
T 2zxe_A 106 SILLWIGAILCFLAYGIQAATEDEPANDNLYLGVVLSTVVIVTGCFSYYQEAKSSRIMDSFKNMVPQQALVIRDG----- 180 (1028)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSSCCCCCHHHHHHHHHHHHHHHHHHHHHHHTCCCCCHHHHHHTTSCSEEEEEETT-----
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECC-----
T ss_conf 999999999999998751134566652007999898988889999999999999999999885278726999899-----
Q ss_pred CCCCCCEEEEECCCCCCCCEEEECCCCCCCCCCEEEECE-EEEEECCCCCCCCEEEECCCCC----------CCCCCEEC
Q ss_conf 767871799836875779999983797226572899610-2463036569866085115885----------47874000
Q 004479 236 DVSDLAYRSVPVHDVEVGSYILVGAGEAVPVDCEVYQGT-ATITIEHLTGEVKPLEAKVGDR----------IPGGARNL 304 (750)
Q Consensus 236 ~~~~~~~~~V~~~~l~vGDiI~i~~Ge~VPaDg~vi~G~-~~Vdes~lTGEs~pv~k~~g~~----------v~aGt~~~ 304 (750)
++++|++++|+|||+|.|++||+|||||++++|+ +.||||+|||||.|+.|.+++. +|+||.+.
T Consensus 181 -----~~~~I~~~~Lv~GDiV~l~~Gd~IPaD~~ll~g~~~~VdeS~LTGES~pv~K~~~~~~~~~~~~~n~v~~GT~v~ 255 (1028)
T 2zxe_A 181 -----EKSTINAEFVVAGDLVEVKGGDRIPADLRIISAHGCKVDNSSLTGESEPQTRSPEFSSENPLETRNIAFFSTNCV 255 (1028)
T ss_dssp -----EEEEEEGGGCCTTCEEEEETTCBCCSEEEEEEEEEEEEECHHHHSCCSCEECCSSCCCSSTTTCSSEECTTCEEE
T ss_pred -----EEEEEEHHHCCCCCEEEECCCCEEECEEEEEEECCEEEECCCCCCCCCCEECCCCCCCCCCCCCCCEEEECCEEE
T ss_conf -----999998889786777998997984122899960858998675678876344346778888445335487374697
Q ss_pred CEEEEEEEEEECCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q ss_conf 40699999975333289999999999610896458999999857779999999999998534333101256403568999
Q 004479 305 DGRMILKATKTWNESTLNRIVQLTEEAQLNKPKLQRWLDEFGEQYSKVVVVLSLAIALIGPFLFKWSFIGTSVCRGSVYR 384 (750)
Q Consensus 305 ~G~~~v~v~~~g~~T~~~~i~~l~~~a~~~k~~~q~~~~~~a~~~~~~~l~~a~~~~~i~~~~~~~~~~~~~~~~~~~~~ 384 (750)
+|.+.++|+++|.+|.+++|.+++++++.+++|+|+.+++++.++.++.++++++++++.. | .+ ..+...+..
T Consensus 256 ~G~~~~~V~~tG~~T~~g~i~~~~~~~~~~~t~lq~~~~~~~~~l~~~~l~~~~~~~~~~~----~--~~-~~~~~~~~~ 328 (1028)
T 2zxe_A 256 EGTARGVVVYTGDRTVMGRIATLASGLEVGRTPIAIEIEHFIHIITGVAVFLGVSFFILSL----I--LG-YSWLEAVIF 328 (1028)
T ss_dssp EEEEEEEEEECGGGSHHHHHHHHHHHSCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----H--TT-CCHHHHHHH
T ss_pred CCEEEEEEEEECCCCHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH----H--CC-CCHHHHHHH
T ss_conf 0169999998451439889998603788788928999999999999999999999999999----7--36-769999999
Q ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHCCCCCCCCHHHHHHCCCCEEEECCCCCCCCCCEEEEEEEECCCCCCCCCC
Q ss_conf 9999996621114269-999999999998739410371477741045689985889786794289999713773113677
Q 004479 385 ALGLMVAASPCALAVA-PLAYATAISSCARKGILLKGGQVLDALASCHTIAFDKTGTLTTGGLMFKAIEPIYGHWIRSKK 463 (750)
Q Consensus 385 ~~~vlv~~~P~aL~la-p~a~~~a~~~~~~~gilvk~~~~lE~L~~v~~i~fDKTGTLT~g~~~v~~i~~~~~~~~~~~~ 463 (750)
++++++++|||+|+++ |+++..+..+++++|+++|+++++|+||++++||||||||||+|+|+|++++..... +....
T Consensus 329 ~i~llv~~iP~~Lp~~vti~l~~~~~~mak~~ilvk~~~avE~Lg~v~~Ic~DKTGTLT~n~m~v~~~~~~~~~-~~~~~ 407 (1028)
T 2zxe_A 329 LIGIIVANVPEGLLATVTVCLTLTAKRMARKNCLVKNLEAVETLGSTSTICSDKTGTLTQNRMTVAHMWFDNQI-HEADT 407 (1028)
T ss_dssp HHHHHHHHSCTTHHHHHHHHHHHHHHHHHTTTEEESSTTHHHHHHHCCEEEECCCCCCBCSSCEEEEEEETTEE-EECCC
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCEECCCHHHHHHCCCEEEECCCCCCCCCCEEEEEEEEECCEE-EECCC
T ss_conf 99999997474179999999999999985589164445676641476299516888888773899999989846-51367
Q ss_pred CCC-C-CCCCCCCH--HHHHHHHHHHH------CCCCC----------CHHHHHHHHHCCCCC-------CCCCCCCEEE
Q ss_conf 666-6-55787538--99999999985------18999----------447899842117999-------9865565256
Q 004479 464 THD-I-SCCIPNCE--KEALAVAAAME------KGTTH----------PIGRAVVDHSIGKDL-------PSVSIDRFEY 516 (750)
Q Consensus 464 ~~~-~-~~~~~~~~--~~~l~~aa~~e------~~s~h----------p~~~Ai~~~~~~~~~-------~~~~~~~f~~ 516 (750)
... . .......+ .+++..++.+. ..+.| |.+.|+++++...+. ....+..+.+
T Consensus 408 ~~~~~~~~~~~~~~~~~~l~~~~alc~~~~~~~~~~~hp~~~~~~~gdp~E~Al~~~a~~~~~~~~~~~~~~~~~~~~pF 487 (1028)
T 2zxe_A 408 TENQSGAAFDKTSATWSALSRIAALCNRAVFQAGQDNVPILKRSVAGDASESALLKCIELCCGSVQGMRDRNPKIVEIPF 487 (1028)
T ss_dssp CTTCCSCCCCSSCHHHHHHHHHHHHSCCCEECTTCTTSCGGGSCEESCHHHHHHHHHHHHHHSCHHHHHHHSCEEEEECC
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHCCCCEEECCCCCCCCCCCEECCCCHHHHHHHHHHHHCCCHHHHHHHCCEEEEECC
T ss_conf 77765544466778999999999865787650477777664530078940999999999958988898874826787044
Q ss_pred ECCCEEEEEEECEEECCCCCCEEEECCCCHHHHHHHCCCH-----------HHHHHHHHHH-CCCCCCCCEEEEEEC---
Q ss_conf 5597479999284623689713454158657884203682-----------6899999985-036789718999610---
Q 004479 517 FPGRGLTATVNGIESGTEGGKELKASLGSVDFITSLCKSE-----------DESRKIKEAV-NGSSYGRGFVHAALS--- 581 (750)
Q Consensus 517 ~~g~g~~~~v~~~~~~~~~~~~~~~~kGa~~~i~~~~~~~-----------~~~~~~~~~~-~~~~~~~~~v~~~~~--- 581 (750)
.+.+++++++..... .++++++.++||+|+.+.++|... ...+.+.+.. .....|.+++.++..
T Consensus 488 ~s~rk~msvi~~~~~-~~~~~~~~~~KGA~e~il~~c~~~~~~g~~~~l~~~~~~~~~~~~~~~a~~G~RvL~~A~~~l~ 566 (1028)
T 2zxe_A 488 NSTNKYQLSIHENEK-SSESRYLLVMKGAPERILDRCSTILLNGAEEPLKEDMKEAFQNAYLELGGLGERVLGFCHFALP 566 (1028)
T ss_dssp CTTTCEEEEEEECSC-TTTCCEEEEEEECHHHHHTTEEEECBTTBCCBCCHHHHHHHHHHHHHHHHTTCEEEEEEEEECC
T ss_pred CCCCCEEEEEEECCC-CCCCCEEEEEECCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEEEECC
T ss_conf 766664799994057-8887179999388289998745653389721288899999999999998559979999987468
Q ss_pred -------------------CC-CEEEEEEECCCCCHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHCCCC------
Q ss_conf -------------------59-4179999418994408999999996299699993599999999999982984------
Q 004479 582 -------------------VN-EKVTLIHLEDRPRPGVSDVIAELKDHARLRVMMLTGDHESSAQRVANAVGIN------ 635 (750)
Q Consensus 582 -------------------~~-~~~G~i~l~D~lr~~~~~aI~~Lk~~~gi~v~mlTGD~~~tA~~iA~~~GI~------ 635 (750)
.+ .++|+++++||+||+++++|++|++ +|++++|+|||++.||.++|+++||.
T Consensus 567 ~~~~~~~~~~~~~~~~~~e~~l~~lG~i~i~Dplr~~~~~aI~~l~~-aGI~v~miTGD~~~tA~~ia~~lgi~~~~~~~ 645 (1028)
T 2zxe_A 567 EDKYNEGYPFDADEPNFPTTDLCFVGLMAMIDPPRAAVPDAVGKCRS-AGIKVIMVTGDHPITAKAIAKGVGIISEGNET 645 (1028)
T ss_dssp STTSCTTCCCCTTTTCSCCSSEEEEEEEEEECCBCTTHHHHHHHHHH-TTCEEEEECSSCHHHHHHHHHHHTSSCTTCCC
T ss_pred CCCCCCCCCCCHHHHHHHHCCEEEEEEECCCCCCCHHHHHHHHHHHH-CCCEEEEECCCCHHHHHHHHHHCCCCCCCCHH
T ss_conf 22134201246245555543809986511578998448999999998-69979998899779999999986988788336
Q ss_pred -----------------------------------------------EEEECCCHHHHHHHHHHHHHHCCCEEEEECCCC
Q ss_conf -----------------------------------------------699517986699999999750499699995993
Q 004479 636 -----------------------------------------------EVYCSLKPEDKLNHVKRTSRDMGGGLIMVGEGI 668 (750)
Q Consensus 636 -----------------------------------------------~v~a~~~Pe~K~~~V~~l~~~~g~~V~mvGDG~ 668 (750)
.+|+|++|+||..+|+.+|+. |+.|+|+|||.
T Consensus 646 i~~~~~~~~~~~~~~~~~~~~~~vi~G~~l~~~~~~~l~~~~~~~~~~v~ar~~P~~K~~iV~~lq~~-g~~V~~iGDG~ 724 (1028)
T 2zxe_A 646 IEDIAARLNIPIGQVNPRDAKACVVHGSDLKDLSTEVLDDILHYHTEIVFARTSPQQKLIIVEGCQRQ-GAIVAVTGDGV 724 (1028)
T ss_dssp HHHHHHHTTCCGGGSCGGGCCEEEEEHHHHTTCCHHHHHHHHHHCSEEEEESCCHHHHHHHHHHHHHT-TCCEEEEECSG
T ss_pred HHHHHHHCCCCHHHCCCCCCCEEEEECHHHHHCCHHHHHHHHHHCCCEEEEECCHHHHHHHHHHHHHC-CCEEEEECCCC
T ss_conf 77777641863222155566269988088564799999999862796799985888999999999968-99899985885
Q ss_pred CCHHHHHHCCCCEEECCCCCHHHHHHCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 5899998389328849997488986339999269989889999999999999999999999999999999
Q 004479 669 NDAPALAAATVGIVLAQRASATAIAVADVLLLRNNISGVPFCVAKSRQTTSLVKQNVALALSCIILASLP 738 (750)
Q Consensus 669 NDapAL~~AdVGIamg~~~sd~A~~aaDivL~~d~l~~i~~~i~~~R~~~~~i~~ni~~~l~~~~~~~~~ 738 (750)
||+|||++||||||||..|+|+|+++||+++++|++++++.++++||++++|+++|+.|.+.+|+..+++
T Consensus 725 ND~paLk~AdvGIAmg~~gtd~ak~aAD~Vl~~~~~~~I~~~i~~gR~i~~ni~k~i~~~l~~n~~~~~~ 794 (1028)
T 2zxe_A 725 NDSPALKKADIGVAMGISGSDVSKQAADMILLDDNFASIVTGVEEGRLIFDNLKKSIAYTLTSNIPEITP 794 (1028)
T ss_dssp GGHHHHHHSSEEEEESSSCCHHHHHHCSEEETTCCTHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHH
T ss_pred CHHHHHHHCCCEEEECCCCCHHHHHHCCEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 3399998689119967765888998548995579877999999999999999999999999999999999
No 7
>3ar4_A Sarcoplasmic/endoplasmic reticulum calcium ATPase; P-type ATPase, hydrolase, calcium transport, calcium binding binding; HET: ATP TG1 PTY; 2.15A {Oryctolagus cuniculus} PDB: 2ear_A* 2eas_A* 2eat_A* 2eau_A* 2dqs_A* 2zbe_A 2zbf_A* 2zbg_A* 3ar2_A* 2zbd_A* 3ar3_A* 3ar5_A* 3ar6_A* 3ar7_A* 3ar8_A* 3ar9_A* 3n5k_A* 1kju_A 1iwo_A 1t5s_A* ...
Probab=1.00 E-value=1 Score=742.45 Aligned_cols=553 Identities=22% Similarity=0.230 Sum_probs=435.9
Q ss_pred HHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCC
Q ss_conf 899999999999985----------4688999999999777899999989999999986319993199972899998767
Q 004479 169 HVLMAFAAFASIFMG----------NSLEGGLLLAMFNLAHIAEEFFTSRAMVDVKELKENYPDSVLVLNVDDDNLPDVS 238 (750)
Q Consensus 169 ~~L~~ia~~~s~~~g----------~~~~~~~i~~~~~l~~~~~~~~~~rs~~~l~~L~~~~p~~a~v~r~~~~~~~~~~ 238 (750)
..++.++++.+++.+ .|+++.++++++.++..++.|++.|+++.+++|.++.|.+++|+|+++
T Consensus 63 ~~~l~~~a~~s~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~qe~~a~~al~~L~~~~~~~a~V~R~g~------- 135 (995)
T 3ar4_A 63 VRILLLAACISFVLAWFEEGEETITAFVEPFVILLILIANAIVGVWQERNAENAIEALKEYEPEMGKVYRADR------- 135 (995)
T ss_dssp HHHHHHHHHHHHHHTTSCCSSGGGSSSHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHGGGSCSEEEEEBTTC-------
T ss_pred HHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCC-------
T ss_conf 9999999999999886025665403478768866788999999999999999999998710897389993798-------
Q ss_pred CCC-EEEEECCCCCCCCEEEECCCCCCCCCCEEEECE---EEEEECCCCCCCCEEEECCC-------------CCCCCCC
Q ss_conf 871-799836875779999983797226572899610---24630365698660851158-------------8547874
Q 004479 239 DLA-YRSVPVHDVEVGSYILVGAGEAVPVDCEVYQGT---ATITIEHLTGEVKPLEAKVG-------------DRIPGGA 301 (750)
Q Consensus 239 ~~~-~~~V~~~~l~vGDiI~i~~Ge~VPaDg~vi~G~---~~Vdes~lTGEs~pv~k~~g-------------~~v~aGt 301 (750)
+ +++|+++||+|||+|.|++||+|||||++++|+ +.||||+|||||.|+.|.++ +.+|+||
T Consensus 136 --~~~~~I~~~~lv~GDiV~l~~Gd~IPaD~~ll~~~s~~l~VdeS~LTGES~pv~K~~~~~~~~~~~~~~~~~~v~~GT 213 (995)
T 3ar4_A 136 --KSVQRIKARDIVPGDIVEVAVGDKVPADIRILSIKSTTLRVDQSILTGESVSVIKHTEPVPDPRAVNQDKKNMLFSGT 213 (995)
T ss_dssp --SSCEEEEGGGCCTTCEEEEETTCBCCSEEEEEEECSSCEEEECHHHHCCCSCEEECCSCCCCTTCCGGGCTTEECTTC
T ss_pred --CEEEEEEHHHCCCCCEEEECCCCCCCCCEEEEEEEECEEEEECCCCCCCCCCEECCCCCCCCCCCCCCCCCCEEECCC
T ss_conf --647997899987787899889784354489998850439998252468876334004566776667555454676187
Q ss_pred EECCEEEEEEEEEECCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC---CHH
Q ss_conf 00040699999975333289999999999610896458999999857779999999999998534333101256---403
Q 004479 302 RNLDGRMILKATKTWNESTLNRIVQLTEEAQLNKPKLQRWLDEFGEQYSKVVVVLSLAIALIGPFLFKWSFIGT---SVC 378 (750)
Q Consensus 302 ~~~~G~~~v~v~~~g~~T~~~~i~~l~~~a~~~k~~~q~~~~~~a~~~~~~~l~~a~~~~~i~~~~~~~~~~~~---~~~ 378 (750)
.+.+|.++++|+++|.+|.+++|.+++++++.+++|+|+.++++++++++++++++++++++....+.....+. ...
T Consensus 214 ~v~~G~~~~~V~~tG~~T~~g~i~~~~~~~~~~~tplq~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 293 (995)
T 3ar4_A 214 NIAAGKALGIVATTGVSTEIGKIRDQMAATEQDKTPLQQKLDEFGEQLSKVISLICVAVWLINIGHFNDPVHGGSWIRGA 293 (995)
T ss_dssp EEEECEEEEEEEECGGGSHHHHHHHHHHTCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTGGGGGSCSSSSCHHHHH
T ss_pred EEECCEEEEEEEECCCCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHH
T ss_conf 89844589999976722198999997325787899389999999999999999999999999998741433464079999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHCCCCCCCCHHHHHHCCCCEEEECCCCCCCCCCEEEEEEEECCCC
Q ss_conf 5689999999996621114269-999999999998739410371477741045689985889786794289999713773
Q 004479 379 RGSVYRALGLMVAASPCALAVA-PLAYATAISSCARKGILLKGGQVLDALASCHTIAFDKTGTLTTGGLMFKAIEPIYGH 457 (750)
Q Consensus 379 ~~~~~~~~~vlv~~~P~aL~la-p~a~~~a~~~~~~~gilvk~~~~lE~L~~v~~i~fDKTGTLT~g~~~v~~i~~~~~~ 457 (750)
...+..++++++++|||+|+++ |+++..+..+|+++|+++|+++++|+||++++||||||||||+|+|+|++++..++.
T Consensus 294 ~~~~~~ai~l~v~aiP~~Lp~~vt~~la~~~~~ma~~~~lvr~~~~iE~Lg~v~~ic~DKTGTLT~n~m~v~~~~~~~~~ 373 (995)
T 3ar4_A 294 IYYFKIAVALAVAAIPEGLPAVITTCLALGTRRMAKKNAIVRSLPSVETLGCTSVICSDKTGTLTTNQMSVCKMFIIDKV 373 (995)
T ss_dssp HHHHHHHHHHHHHHSCTTHHHHHHHHHHHHHHHHHHTTEEESCTTHHHHHHTCCEEEEESTTTTBCCCCEEEEEEEEEEE
T ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCEECCCHHHHHHCCCEEEEECCCCCCCCCCEEEEEEEECCCC
T ss_conf 99999999999986676048999999999999844178486134155550383399765888766585699999834755
Q ss_pred C--------C--CCCCCCCCCC-------CCCCCHHHH--HHHHHHHHC--------------CCCCCHHHHHHHHHCCC
Q ss_conf 1--------1--3677666655-------787538999--999999851--------------89994478998421179
Q 004479 458 W--------I--RSKKTHDISC-------CIPNCEKEA--LAVAAAMEK--------------GTTHPIGRAVVDHSIGK 504 (750)
Q Consensus 458 ~--------~--~~~~~~~~~~-------~~~~~~~~~--l~~aa~~e~--------------~s~hp~~~Ai~~~~~~~ 504 (750)
. . +...+..... ........+ +..++++.+ ...+|.+.|++.++...
T Consensus 374 ~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~l~~~~alc~~~~~~~~~~~~~~~~~g~p~E~Al~~~a~~~ 453 (995)
T 3ar4_A 374 DGDFCSLNEFSITGSTYAPEGEVLKNDKPIRSGQFDGLVELATICALCNDSSLDFNETKGVYEKVGEATETALTTLVEKM 453 (995)
T ss_dssp ETTEEEEEEEEECCSSSSSCCCEEETTEECCGGGCHHHHHHHHHHHHSCCCEEEEETTTTEEEEESCHHHHHHHHHHHHH
T ss_pred CCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCEEECCCCCHHHHHHHHHHC
T ss_conf 67655430254047776886310136643444455899999999987488805656889832554796479999999983
Q ss_pred CC-----C------------------CCCCCCEEEECCCEEEEEEECEEECCCCC-----CEEEECCCCHHHHHHHCCCH
Q ss_conf 99-----9------------------86556525655974799992846236897-----13454158657884203682
Q 004479 505 DL-----P------------------SVSIDRFEYFPGRGLTATVNGIESGTEGG-----KELKASLGSVDFITSLCKSE 556 (750)
Q Consensus 505 ~~-----~------------------~~~~~~f~~~~g~g~~~~v~~~~~~~~~~-----~~~~~~kGa~~~i~~~~~~~ 556 (750)
+. . ...+..+++.+.|+.|+++... +++ ++..++||+++.+.++|...
T Consensus 454 g~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~pF~s~rk~msvi~~~----~~g~~~~~~~~~~~KGa~e~il~~c~~~ 529 (995)
T 3ar4_A 454 NVFNTEVRNLSKVERANACNSVIRQLMKKEFTLEFSRDRKSMSVYCSP----AKSSRAAVGNKMFVKGAPEGVIDRCNYV 529 (995)
T ss_dssp CTTCCCCTTSCTTTSTTHHHHHHHHHEEEEEEEEEETTTTEEEEEEEE----SSCCSCSCCCEEEEEECHHHHHHTEEEE
T ss_pred CCCCCCCCCCCCCCCCCCCHHHHHHHCCEEEEEECCCCCCEEEEEEEC----CCCCCCCCCEEEEECCCHHHHHHHCCHH
T ss_conf 996410001342010121015566417457774048888756999834----8987666444999758879999854054
Q ss_pred -----------HHHHHHHHHHC-C--CCCCCCEEEEEECC-------------------C---CEEEEEEECCCCCHHHH
Q ss_conf -----------68999999850-3--67897189996105-------------------9---41799994189944089
Q 004479 557 -----------DESRKIKEAVN-G--SSYGRGFVHAALSV-------------------N---EKVTLIHLEDRPRPGVS 600 (750)
Q Consensus 557 -----------~~~~~~~~~~~-~--~~~~~~~v~~~~~~-------------------~---~~~G~i~l~D~lr~~~~ 600 (750)
...+.+.+... . ...|.+++.++... + ..+|+++++||+||+++
T Consensus 530 ~~~~~~~~l~~~~~~~~~~~~~~~~~a~~GlRvLa~A~k~~~~~~~~~~~~~~~~~~~~e~~l~~lG~~~i~D~lr~~~~ 609 (995)
T 3ar4_A 530 RVGTTRVPMTGPVKEKILSVIKEWGTGRDTLRCLALATRDTPPKREEMVLDDSSRFMEYETDLTFVGVVGMLDPPRKEVM 609 (995)
T ss_dssp EETTEEEECCHHHHHHHHHHHHHHHHSTTCCEEEEEEEESSCCCGGGCCTTCGGGHHHHTCSEEEEEEEEEECCBCTTHH
T ss_pred HCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCEEEEEEEEECCCCCCCCCCCCCHHHHHHCCCCEEEEEEEECCCCCHHHH
T ss_conf 42897324999999999999998776305614889999834765111222340244553069489999852588966699
Q ss_pred HHHHHHHHCCCCEEEEECCCCHHHHHHHHHHCCCCE-------------------------------EEECCCHHHHHHH
Q ss_conf 999999962996999935999999999999829846-------------------------------9951798669999
Q 004479 601 DVIAELKDHARLRVMMLTGDHESSAQRVANAVGINE-------------------------------VYCSLKPEDKLNH 649 (750)
Q Consensus 601 ~aI~~Lk~~~gi~v~mlTGD~~~tA~~iA~~~GI~~-------------------------------v~a~~~Pe~K~~~ 649 (750)
++|+.||+ +|++++|+|||+..||.++|+++||.. +|+|++|+||.++
T Consensus 610 ~~I~~l~~-~Gi~v~miTGD~~~ta~~ia~~lgi~~~~~~i~~~~~~g~~~~~l~~~~~~~~~~~~~v~~r~~P~~K~~~ 688 (995)
T 3ar4_A 610 GSIQLCRD-AGIRVIMITGDNKGTAIAICRRIGIFGENEEVADRAYTGREFDDLPLAEQREACRRACCFARVEPSHKSKI 688 (995)
T ss_dssp HHHHHHHH-TTCEEEEEESSCHHHHHHHHHHHTSSCTTCCCTTTEEEHHHHHTSCHHHHHHHHHHCCEEESCCSSHHHHH
T ss_pred HHHHHHHH-CCCEEEEECCCCHHHHHHHHHHCCCCCCCCCCCCEEEECHHHHHCCHHHHHHHHHHCCEEEEECHHHHHHH
T ss_conf 99999998-69989998999789999999983967788753534898366462899999998753738997089999999
Q ss_pred HHHHHHHCCCEEEEECCCCCCHHHHHHCCCCEEECCCCCHHHHHHCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99997504996999959935899998389328849997488986339999269989889999999999999999999999
Q 004479 650 VKRTSRDMGGGLIMVGEGINDAPALAAATVGIVLAQRASATAIAVADVLLLRNNISGVPFCVAKSRQTTSLVKQNVALAL 729 (750)
Q Consensus 650 V~~l~~~~g~~V~mvGDG~NDapAL~~AdVGIamg~~~sd~A~~aaDivL~~d~l~~i~~~i~~~R~~~~~i~~ni~~~l 729 (750)
|+.+|++ |+.|+|+|||+||+|||++||+||||| .|+++|+++||+++++|+|.+++.++++||++++|++||+.|.+
T Consensus 689 v~~l~~~-g~~v~~~GDG~ND~~alk~Advgiamg-~g~~~ak~aAd~vl~~~~~~~i~~~i~~GR~~~~~i~k~i~~~l 766 (995)
T 3ar4_A 689 VEYLQSY-DEITAMTGDGVNDAPALKKAEIGIAMG-SGTAVAKTASEMVLADDNFSTIVAAVEEGRAIYNNMKQFIRYLI 766 (995)
T ss_dssp HHHHHTT-TCCEEEEECSGGGHHHHHHSTEEEEET-TSCHHHHHTCSEEETTCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHC-CCEEEEECCCCHHHHHHHHCCEEEEEC-CCCHHHHHHCCEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 9999977-997999838814499998789679967-88999997388997778778999999998999999999999999
Q ss_pred HHHHHHHH
Q ss_conf 99999999
Q 004479 730 SCIILASL 737 (750)
Q Consensus 730 ~~~~~~~~ 737 (750)
.+|+...+
T Consensus 767 ~~Ni~~~~ 774 (995)
T 3ar4_A 767 SSNVGEVV 774 (995)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
T ss_conf 99999999
No 8
>3ixz_A Potassium-transporting ATPase alpha; ION pump, H+, K+-ATPase, P-type ATPase, membrane protein, hydrolase, aluminium fluoride, ATP-binding; 6.50A {Sus scrofa} PDB: 2yn9_A 2xzb_A 1iwc_A 1iwf_A
Probab=1.00 E-value=1 Score=721.43 Aligned_cols=535 Identities=19% Similarity=0.229 Sum_probs=425.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCEEEEECCCCCCCCEEEECCCCC
Q ss_conf 46889999999997778999999899999999863199931999728999987678717998368757799999837972
Q 004479 184 NSLEGGLLLAMFNLAHIAEEFFTSRAMVDVKELKENYPDSVLVLNVDDDNLPDVSDLAYRSVPVHDVEVGSYILVGAGEA 263 (750)
Q Consensus 184 ~~~~~~~i~~~~~l~~~~~~~~~~rs~~~l~~L~~~~p~~a~v~r~~~~~~~~~~~~~~~~V~~~~l~vGDiI~i~~Ge~ 263 (750)
.|+++..+++++.++..+..|++.|+.+.+++|.++.|.+++|+|+| ++++|++++|+|||+|.+++||+
T Consensus 139 ~~~~~~~i~~vv~i~~~~~~~qe~ka~~al~~L~~l~~~~a~ViRdG----------~~~~I~~~eLv~GDiV~l~~Gd~ 208 (1034)
T 3ixz_A 139 NLYLALALIAVVVVTGCFGYYQEFKSTNIIASFKNLVPQQATVIRDG----------DKFQINADQLVVGDLVEMKGGDR 208 (1034)
T ss_pred CHHHHHHHHEEEEHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECC----------EEEEEEHHHCCCCCEEEECCCCE
T ss_conf 20564243013227999999999999999999762489735999999----------89998889879885899857964
Q ss_pred CCCCCEEEECEE-EEEECCCCCCCCEEEECCCC----------CCCCCCEECCEEEEEEEEEECCCCHHHHHHHHHHHHH
Q ss_conf 265728996102-46303656986608511588----------5478740004069999997533328999999999961
Q 004479 264 VPVDCEVYQGTA-TITIEHLTGEVKPLEAKVGD----------RIPGGARNLDGRMILKATKTWNESTLNRIVQLTEEAQ 332 (750)
Q Consensus 264 VPaDg~vi~G~~-~Vdes~lTGEs~pv~k~~g~----------~v~aGt~~~~G~~~v~v~~~g~~T~~~~i~~l~~~a~ 332 (750)
|||||++++|+. .||||+|||||.|+.|.+++ .+|+||.+.+|.++++|+++|.+|.+++|.+++++++
T Consensus 209 VPAD~~ll~~~~l~VdES~LTGES~pv~K~~~~~~~~~~~~~n~~f~GT~v~~G~~~~vVv~tG~~T~~GkI~~~~~~~~ 288 (1034)
T 3ixz_A 209 VPADIRILQAQGRKVDNSSLTGESEPQTRSPECTHESPLETRNIAFFSTMCLEGTAQGLVVNTGDRTIIGRIASLASGVE 288 (1034)
T ss_pred ECCCEEEEEECCCEEEECCCCCCCCCEECCCCCCCCCCCCCCCCEECCEEEEEECCEEEEEEEHHHHHHHHHHHHHCCCC
T ss_conf 35876999708805883366788777665577766563234451220406986042499996025437408998620356
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH
Q ss_conf 08964589999998577799999999999985343331012564035689999999996621114269-99999999999
Q 004479 333 LNKPKLQRWLDEFGEQYSKVVVVLSLAIALIGPFLFKWSFIGTSVCRGSVYRALGLMVAASPCALAVA-PLAYATAISSC 411 (750)
Q Consensus 333 ~~k~~~q~~~~~~a~~~~~~~l~~a~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~vlv~~~P~aL~la-p~a~~~a~~~~ 411 (750)
..++|+|+.+++++.++..+.++++++++++.. +. ...+...+..++++++++|||+|+++ ++++..+..++
T Consensus 289 ~~~tpl~~~~~~~~~~l~~~~~~~~~~~~~~~~------~~-~~~~~~~~~~~i~l~v~~iPe~Lp~~vti~la~~~~rm 361 (1034)
T 3ixz_A 289 NEKTPIAIEIEHFVDIIAGLAILFGATFFIVAM------CI-GYTFLRAMVFFMAIVVAYVPEGLLATVTVCLSLTAKRL 361 (1034)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HH-CCHHHHHHHHHHHHHHHEECCCCHHHHHHHHHHHHHHH
T ss_conf 678918999999999999999999999999999------96-41299999999999882026650899999999999987
Q ss_pred HHCCCCCCCCHHHHHHCCCCEEEECCCCCCCCCCEEEEEEEECCCCCCCCCCCCCCC-CC--CCCCHHHHHHHHHHHHC-
Q ss_conf 873941037147774104568998588978679428999971377311367766665-57--87538999999999851-
Q 004479 412 ARKGILLKGGQVLDALASCHTIAFDKTGTLTTGGLMFKAIEPIYGHWIRSKKTHDIS-CC--IPNCEKEALAVAAAMEK- 487 (750)
Q Consensus 412 ~~~gilvk~~~~lE~L~~v~~i~fDKTGTLT~g~~~v~~i~~~~~~~~~~~~~~~~~-~~--~~~~~~~~l~~aa~~e~- 487 (750)
+++|+++|++.++|+||++++||||||||||+|+|+|.+++..+............. .. .......++..++.+..
T Consensus 362 ak~~~lvr~l~avE~LG~v~~IcsDKTGTLT~n~m~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~lc~~a 441 (1034)
T 3ixz_A 362 ASKNCVVKNLEAVETLGSTSVICSDKTGTLTQNRMTVSHLWFDNHIHSADTTEDQSGQTFDQSSETWRALCRVLTLCNRA 441 (1034)
T ss_pred HHCCEEECCHHHHHHHCCCCEEECCCCCCCCCCEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCC
T ss_conf 33882864767888615872997289787236837999999779512256766656655676778999999998871626
Q ss_pred ---------------CCCCCHHHHHHHHHCCCCC-------CCCCCCCEEEECCCEEEEEEECEEECCCCCCEEEECCCC
Q ss_conf ---------------8999447899842117999-------986556525655974799992846236897134541586
Q 004479 488 ---------------GTTHPIGRAVVDHSIGKDL-------PSVSIDRFEYFPGRGLTATVNGIESGTEGGKELKASLGS 545 (750)
Q Consensus 488 ---------------~s~hp~~~Ai~~~~~~~~~-------~~~~~~~f~~~~g~g~~~~v~~~~~~~~~~~~~~~~kGa 545 (750)
...+|.+.|++.++..... ....+..+.+.+.++.+..+..... .++++++.++||+
T Consensus 442 ~~~~~~~~~~~~~~~~~gdp~e~All~~~~~~~~~~~~~~~~~~~~~~~pF~s~rk~m~~v~~~~~-~~~~~~~l~~KGA 520 (1034)
T 3ixz_A 442 AFKSGQDAVPVPKRIVIGDASETALLKFSELTLGNAMGYRERFPKVCEIPFNSTNKFQLSIHTLED-PRDPRHVLVMKGA 520 (1034)
T ss_pred EECCCCCCCCCCCCEECCCCHHHHHHHHHHHHCCCHHHHHHHCCCEEEEEECCCCCEEEEEEEECC-CCCCCEEEEEECC
T ss_conf 653576777665743554925999999999857886888974860699503577726899998337-8886089999688
Q ss_pred HHHHHHHCCCHH-----------HHHHHHHHH-CCCCCCCCEEEEEE-----------------------CCCCEEEEEE
Q ss_conf 578842036826-----------899999985-03678971899961-----------------------0594179999
Q 004479 546 VDFITSLCKSED-----------ESRKIKEAV-NGSSYGRGFVHAAL-----------------------SVNEKVTLIH 590 (750)
Q Consensus 546 ~~~i~~~~~~~~-----------~~~~~~~~~-~~~~~~~~~v~~~~-----------------------~~~~~~G~i~ 590 (750)
||.+.++|+... ..+.+.+.. .....|.+++.++. ..-.++|+++
T Consensus 521 pe~il~~c~~~~~~~~~~~l~~~~~~~~~~~~~~~a~~G~RvLa~A~~~l~~~~~~~~~~~~~~~~~~~e~~l~~lGlv~ 600 (1034)
T 3ixz_A 521 PERVLERCSSILIKGQELPLDEQWREAFQTAYLSLGGLGERVLGFCQLYLSEKDYPPGYAFDVEAMNFPTSGLSFAGLVS 600 (1034)
T ss_pred HHHHHHHHHHHHCCCCEECCCHHHHHHHHHHHHHHHHCCCHHHEEEEEECCHHHCCCCCCCCHHHHHCCCCCCEEEEEEE
T ss_conf 49999973775528964019999999999999998714758236867855800043211245344302224867988871
Q ss_pred ECCCCCHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHCCCC-----------------------------------
Q ss_conf 418994408999999996299699993599999999999982984-----------------------------------
Q 004479 591 LEDRPRPGVSDVIAELKDHARLRVMMLTGDHESSAQRVANAVGIN----------------------------------- 635 (750)
Q Consensus 591 l~D~lr~~~~~aI~~Lk~~~gi~v~mlTGD~~~tA~~iA~~~GI~----------------------------------- 635 (750)
++||+||+++++|++|++ +|++++|+|||+..+|.++|+++||.
T Consensus 601 i~Dp~r~~~~~aI~~l~~-aGI~vvmiTGd~~~tA~~ia~~lgi~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 679 (1034)
T 3ixz_A 601 MIDPPRATVPDAVLKCRT-AGIRVIMVTGDHPITAKAIAASVGIISEGSETVEDIAARLRVPVDQVNRKDARACVINGMQ 679 (1034)
T ss_pred CCCCCCHHHHHHHHHHHH-CCCEEEEEECCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCHHCCCCCCCEEEEECHH
T ss_conf 368870659999999998-6996999969977999999998699988724788888761765000254454316771676
Q ss_pred ------------------EEEECCCHHHHHHHHHHHHHHCCCEEEEECCCCCCHHHHHHCCCCEEECCCCCHHHHHHCCE
Q ss_conf ------------------69951798669999999975049969999599358999983893288499974889863399
Q 004479 636 ------------------EVYCSLKPEDKLNHVKRTSRDMGGGLIMVGEGINDAPALAAATVGIVLAQRASATAIAVADV 697 (750)
Q Consensus 636 ------------------~v~a~~~Pe~K~~~V~~l~~~~g~~V~mvGDG~NDapAL~~AdVGIamg~~~sd~A~~aaDi 697 (750)
.+|+|++|+||.++|+.+|+. |+.|+|+|||.||+|||++||+|||||.+|+|.++++||+
T Consensus 680 l~~~~~~~l~~~~~~~~~~v~ar~~P~~K~~iv~~lq~~-g~~V~a~GDG~ND~~mLk~A~vGIAMg~ng~d~aK~aAD~ 758 (1034)
T 3ixz_A 680 LKDMDPSELVEALRTHPEMVFARTSPQQKLVIVESCQRL-GAIVAVTGDGVNDSPALKKADIGVAMGIAGSDAAKNAADM 758 (1034)
T ss_pred HHHCCHHHHHHHHHHCCCEEEEECCHHHHHHHHHHHHHC-CCEEEEECCCHHHHHHHHHCCEEEEECCCCCHHHHHHCCE
T ss_conf 663899999999873782699966989999999999976-9999998795776999997893298077567999985499
Q ss_pred EEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99269989889999999999999999999999999999999
Q 004479 698 LLLRNNISGVPFCVAKSRQTTSLVKQNVALALSCIILASLP 738 (750)
Q Consensus 698 vL~~d~l~~i~~~i~~~R~~~~~i~~ni~~~l~~~~~~~~~ 738 (750)
++++||+.+++.++++||++++|+++++.|.+++|+..+++
T Consensus 759 Vl~~~~~~gI~~ai~~GR~i~~ni~k~i~~~l~~ni~~~~~ 799 (1034)
T 3ixz_A 759 ILLDDNFASIVTGVEQGRLIFDNLKKSIAYTLTKNIPELTP 799 (1034)
T ss_pred EECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 96668833999999998899999999999999999999999
No 9
>2yj3_A Copper-transporting ATPase; hydrolase, P-type ATPase, COPB, heavy metal translocation; 2.20A {Sulfolobus solfataricus} PDB: 2iye_A 2yj6_A* 2yj5_A* 2yj4_A*
Probab=1.00 E-value=1 Score=328.09 Aligned_cols=261 Identities=26% Similarity=0.486 Sum_probs=228.5
Q ss_pred HHHHHHHHHCCCCCCCCHHHHHHCCCCEEEECCCCCCCCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHH
Q ss_conf 99999998739410371477741045689985889786794289999713773113677666655787538999999999
Q 004479 405 ATAISSCARKGILLKGGQVLDALASCHTIAFDKTGTLTTGGLMFKAIEPIYGHWIRSKKTHDISCCIPNCEKEALAVAAA 484 (750)
Q Consensus 405 ~~a~~~~~~~gilvk~~~~lE~L~~v~~i~fDKTGTLT~g~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aa~ 484 (750)
..++++++++||++|+++++|.|+++++||||||||||+|+|.+.++. . +++++.++++
T Consensus 3 l~a~~~~~~~gil~k~~~~le~l~~i~~v~fDktGTLT~g~~~v~~~~-----~----------------~~~~l~~~~~ 61 (263)
T 2yj3_A 3 LSLYEKMLHKGMIIKNSNVYEKIKEIDTIIFEKTGTLTYGTPIVTQFI-----G----------------DSLSLAYAAS 61 (263)
Q ss_pred HHCCCCCCHHHHHHHHHCCCCCCCCCCCCEEEECCCEEEEEEECEEECCCCCCEEEECCCCHHHHHHHCCCHHHHHHHHH
Q ss_conf 85189994478998421179999865565256559747999928462368971345415865788420368268999999
Q 004479 485 MEKGTTHPIGRAVVDHSIGKDLPSVSIDRFEYFPGRGLTATVNGIESGTEGGKELKASLGSVDFITSLCKSEDESRKIKE 564 (750)
Q Consensus 485 ~e~~s~hp~~~Ai~~~~~~~~~~~~~~~~f~~~~g~g~~~~v~~~~~~~~~~~~~~~~kGa~~~i~~~~~~~~~~~~~~~ 564 (750)
+|..|.||+++|+..++...+.+.....+++..+|+|+...+.+.. +..|+++.
T Consensus 62 ~e~~s~hp~a~ai~~~~~~~g~~~~~~~~~~~~~G~g~~~~~~~~~----------~~~G~~~~---------------- 115 (263)
T 2yj3_A 62 VEALSSHPIAKAIVKYAKEQGVKILEVKDFKEISGIGVRGKISDKI----------IEVKKAEN---------------- 115 (263)
Q ss_pred HHCCCCCCCCEEEEEECCCCEEEEEEECCCCCHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHCCCCEEEECCCHH
Q ss_conf 85036789718999610594179999418994408999999996299699993599999999999982984699517986
Q 004479 565 AVNGSSYGRGFVHAALSVNEKVTLIHLEDRPRPGVSDVIAELKDHARLRVMMLTGDHESSAQRVANAVGINEVYCSLKPE 644 (750)
Q Consensus 565 ~~~~~~~~~~~v~~~~~~~~~~G~i~l~D~lr~~~~~aI~~Lk~~~gi~v~mlTGD~~~tA~~iA~~~GI~~v~a~~~Pe 644 (750)
+.+ ++..+ .+...|.+.+.|+++|++.++++.|++ .|+++.|+|||+..++..+++++|+.++|+.+.|+
T Consensus 116 -------~~~-~~~~~-~~~~~~~~~~~~~~~~g~~~~l~~L~~-~g~~~~i~T~~~~~~~~~~~~~~gl~~~f~~~~p~ 185 (263)
T 2yj3_A 116 -------NND-IAVYI-NGEPIASFNISDVPRPNLKDYLEKLKN-EGLKIIILSGDKEDKVKELSKELNIQEYYSNLSPE 185 (263)
Q ss_pred HHHHHHHHHHHHCCCEEEEECCCCCCHHHHHHCCCCEEECCCCCHHHHHHCCEEEECCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 69999999975049969999599358999983893288499974889863399992699898899999999999999999
Q 004479 645 DKLNHVKRTSRDMGGGLIMVGEGINDAPALAAATVGIVLAQRASATAIAVADVLLLRNNISGVPFCVAKSRQTTSLVKQN 724 (750)
Q Consensus 645 ~K~~~V~~l~~~~g~~V~mvGDG~NDapAL~~AdVGIamg~~~sd~A~~aaDivL~~d~l~~i~~~i~~~R~~~~~i~~n 724 (750)
+|...++.++.. ++.++|||||.||++|+++|++|+++|. +++.+.+.+|++++++++..++.++.++|+++++|+||
T Consensus 186 ~k~~~~~~l~~~-~~~~~~VGD~~~D~~aa~~Agv~va~g~-~~~~~~~~ad~v~~~~~l~~l~~~l~~~r~~~~~i~~n 263 (263)
T 2yj3_A 186 DKVRIIEKLKQN-GNKVLMIGDGVNDAAALALADVSVAMGN-GVDISKNVADIILVSNDIGTLLGLIKNRKRLSNAIPSN 263 (263)
No 10
>3a1c_A Probable copper-exporting P-type ATPase A; ATP-binding, cell membrane, copper transport, hydrolase, ION transport, magnesium, membrane; HET: ACP; 1.85A {Archaeoglobus fulgidus} PDB: 3a1d_A* 3a1e_A* 2b8e_A 2voy_J 2voy_I
Probab=1.00 E-value=1 Score=251.33 Aligned_cols=279 Identities=28% Similarity=0.430 Sum_probs=228.4
Q ss_pred HHHHHHHHCCCCCCCCHHHHHHCCCCEEEECCCCCCCCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf 99999987394103714777410456899858897867942899997137731136776666557875389999999998
Q 004479 406 TAISSCARKGILLKGGQVLDALASCHTIAFDKTGTLTTGGLMFKAIEPIYGHWIRSKKTHDISCCIPNCEKEALAVAAAM 485 (750)
Q Consensus 406 ~a~~~~~~~gilvk~~~~lE~L~~v~~i~fDKTGTLT~g~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aa~~ 485 (750)
.+..+++++||++|+++++|.++++++|+||||||||.+.+.+.++++..+ . +++++.+++++
T Consensus 8 ~~~~~~~~~gilik~~~~le~l~~i~~viFD~dGTL~ds~~~~~~~~~~~~-~----------------~~~~l~~~~~~ 70 (287)
T 3a1c_A 8 HGSRKGAELGILIKNADALEVAEKVTAVIFDKTGTLTKGKPEVTDLVPLNG-D----------------ERELLRLAAIA 70 (287)
T ss_dssp ------CCCCEEECSTTHHHHHHHCCEEEEECCCCCBCSCCEEEEEEESSS-C----------------HHHHHHHHHHH
T ss_pred HHHHHHHHCCEEEECCHHHHHHHCCCEEEEECCCCCCCCCEEEEEEEECCC-C----------------HHHHHHHHHHH
T ss_conf 157899879979968089988536999999689988289779999981799-9----------------99999999997
Q ss_pred HCCCCCCHHHHHHHHHCCCCCCCCCCCCEEEECCCEEEEEEECEEECCCCCCEEEECCCCHHHHHHHCCCH-HHHHHHHH
Q ss_conf 51899944789984211799998655652565597479999284623689713454158657884203682-68999999
Q 004479 486 EKGTTHPIGRAVVDHSIGKDLPSVSIDRFEYFPGRGLTATVNGIESGTEGGKELKASLGSVDFITSLCKSE-DESRKIKE 564 (750)
Q Consensus 486 e~~s~hp~~~Ai~~~~~~~~~~~~~~~~f~~~~g~g~~~~v~~~~~~~~~~~~~~~~kGa~~~i~~~~~~~-~~~~~~~~ 564 (750)
|..+.||+++|+..++...+++......+....|.++.. . .+.+|+++++.+..... .......+
T Consensus 71 e~~s~hp~~~a~~~~~~~~g~~~~~~~~~~~~~G~~~~~---~-----------~~~~g~~~~~~~~~~~~~~~~~~~~~ 136 (287)
T 3a1c_A 71 ERRSEHPIAEAIVKKALEHGIELGEPEKVEVIAGEGVVA---D-----------GILVGNKRLMEDFGVAVSNEVELALE 136 (287)
T ss_dssp TTTCCSHHHHHHHHHHHHTTCCCCCCSCEEEETTTEEEE---T-----------TEEEECHHHHHHTTCCCCHHHHHHHH
T ss_pred HHCCCCHHHHHHHHHHHHCCCCCCCCCCCEEECCCCEEE---E-----------EEEECCHHHHHHCCCCCCHHHHHHHH
T ss_conf 521799799999999986599855554414624887288---9-----------99988999998659975077899999
Q ss_pred HHCCCCCCCCEEEEEECCCCEEEEEEECCCCCHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHCCCCEEEECCCHH
Q ss_conf 85036789718999610594179999418994408999999996299699993599999999999982984699517986
Q 004479 565 AVNGSSYGRGFVHAALSVNEKVTLIHLEDRPRPGVSDVIAELKDHARLRVMMLTGDHESSAQRVANAVGINEVYCSLKPE 644 (750)
Q Consensus 565 ~~~~~~~~~~~v~~~~~~~~~~G~i~l~D~lr~~~~~aI~~Lk~~~gi~v~mlTGD~~~tA~~iA~~~GI~~v~a~~~Pe 644 (750)
... ..+.+.+++.. .+...+.+...++++|++.++++.|++ .|+++.++||++...+..+.+.+|+..+|....|+
T Consensus 137 ~~~--~~g~~~i~~~~-d~~~~~~~~~~~~~~~g~~~~l~~L~~-~g~~~~i~T~~~~~~~~~~l~~~gl~~~f~~i~~~ 212 (287)
T 3a1c_A 137 KLE--REAKTAVIVAR-NGRVEGIIAVSDTLKESAKPAVQELKR-MGIKVGMITGDNWRSAEAISRELNLDLVIAEVLPH 212 (287)
T ss_dssp HHH--HTTCEEEEEEE-TTEEEEEEEEECCBCTTHHHHHHHHHH-TTCEEEEECSSCHHHHHHHHHHHTCSEEECSCCTT
T ss_pred HHH--HCCCEEEEEEE-CCEEEEEEEECCCCCHHHHHHHHHHHH-CCCEEEEEECCCHHHHHHHHHHHCCCEEEEECCHH
T ss_conf 987--47975999999-998999999545361418999999997-79859999098989999999980981311005817
Q ss_pred HHHHHHHHHHHHCCCEEEEECCCCCCHHHHHHCCCCEEECCCCCHHHHHHCCEEEECCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 699999999750499699995993589999838932884999748898633999926998988999999999999999
Q 004479 645 DKLNHVKRTSRDMGGGLIMVGEGINDAPALAAATVGIVLAQRASATAIAVADVLLLRNNISGVPFCVAKSRQTTSLVK 722 (750)
Q Consensus 645 ~K~~~V~~l~~~~g~~V~mvGDG~NDapAL~~AdVGIamg~~~sd~A~~aaDivL~~d~l~~i~~~i~~~R~~~~~i~ 722 (750)
.|...++.+... +.++||||+.||.+|.+.|+++++++. +.+...+.+|+++.++++..+..++..+|+++++|+
T Consensus 213 ~K~~~~~~l~~~--~~~~~vGDs~~Di~~a~~ag~~v~~~~-~~~~~~~~ad~v~~~~~~~~l~~~l~~~~~~~~~i~ 287 (287)
T 3a1c_A 213 QKSEEVKKLQAK--EVVAFVGDGINDAPALAQADLGIAVGS-GSDVAVESGDIVLIRDDLRDVVAAIQLSRKTMSKIK 287 (287)
T ss_dssp CHHHHHHHHTTT--CCEEEEECTTTCHHHHHHSSEEEEECC-CSCCSSCCSSEEESSSCTHHHHHHHHTTC-------
T ss_pred HHHHHHHHHHCC--CEEEEEECCHHHHHHHHHCCEEEEECC-CCHHHHHHCCEEEECCCHHHHHHHHHHHHHHHHHHC
T ss_conf 799999998258--839999797778999997895299678-877889629999947998999999999999998509
Done!