Query 004480
Match_columns 750
No_of_seqs 637 out of 4126
Neff 11.0
Searched_HMMs 46136
Date Fri Mar 29 00:06:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004480.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/004480hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03218 maturation of RBCL 1; 100.0 7.5E-67 1.6E-71 584.0 64.6 548 71-740 370-950 (1060)
2 PLN03077 Protein ECB2; Provisi 100.0 3.2E-67 6.9E-72 601.3 60.4 624 70-745 50-727 (857)
3 PLN03218 maturation of RBCL 1; 100.0 4.6E-65 9.9E-70 569.7 64.2 515 160-744 375-915 (1060)
4 PLN03077 Protein ECB2; Provisi 100.0 1.8E-63 3.8E-68 570.5 62.4 549 71-674 121-676 (857)
5 PLN03081 pentatricopeptide (PP 100.0 9.7E-60 2.1E-64 526.6 51.4 454 117-679 91-552 (697)
6 PLN03081 pentatricopeptide (PP 100.0 2.5E-57 5.3E-62 507.3 53.5 468 71-654 87-561 (697)
7 TIGR02917 PEP_TPR_lipo putativ 100.0 1.6E-27 3.5E-32 280.9 65.4 554 63-676 322-892 (899)
8 TIGR02917 PEP_TPR_lipo putativ 100.0 6.4E-27 1.4E-31 275.8 66.2 433 168-668 376-816 (899)
9 PRK11447 cellulose synthase su 99.9 1.4E-19 3.1E-24 213.3 65.3 541 59-651 51-701 (1157)
10 PRK11447 cellulose synthase su 99.9 1.2E-18 2.5E-23 205.6 60.7 497 83-655 159-746 (1157)
11 KOG4626 O-linked N-acetylgluco 99.9 3.9E-20 8.4E-25 183.2 35.2 451 59-628 37-500 (966)
12 KOG4626 O-linked N-acetylgluco 99.9 3.5E-20 7.6E-25 183.5 34.8 368 61-462 107-485 (966)
13 PRK09782 bacteriophage N4 rece 99.9 1.7E-16 3.7E-21 178.5 56.1 500 59-650 67-706 (987)
14 PRK11788 tetratricopeptide rep 99.9 1E-18 2.2E-23 183.8 33.7 311 226-657 40-354 (389)
15 PRK11788 tetratricopeptide rep 99.8 7.4E-18 1.6E-22 177.2 36.4 286 301-679 47-342 (389)
16 TIGR00990 3a0801s09 mitochondr 99.8 3.8E-16 8.2E-21 173.0 50.7 433 72-611 128-570 (615)
17 PRK09782 bacteriophage N4 rece 99.8 9.7E-15 2.1E-19 164.5 57.5 516 71-681 44-703 (987)
18 PRK15174 Vi polysaccharide exp 99.8 1.2E-15 2.5E-20 168.3 47.8 329 72-461 43-380 (656)
19 PRK15174 Vi polysaccharide exp 99.8 1.3E-15 2.9E-20 167.8 45.2 286 166-461 53-346 (656)
20 TIGR00990 3a0801s09 mitochondr 99.8 2.8E-15 6.2E-20 166.0 46.8 418 120-650 134-571 (615)
21 KOG2002 TPR-containing nuclear 99.8 4.1E-14 9E-19 148.8 48.4 565 59-663 153-758 (1018)
22 KOG2002 TPR-containing nuclear 99.8 9.6E-14 2.1E-18 146.1 48.5 537 63-626 191-759 (1018)
23 KOG4422 Uncharacterized conser 99.8 7.2E-14 1.6E-18 133.4 41.9 320 123-463 125-463 (625)
24 PRK10049 pgaA outer membrane p 99.8 2.8E-14 6E-19 161.0 45.3 416 71-625 15-467 (765)
25 PRK14574 hmsH outer membrane p 99.8 1.3E-13 2.8E-18 152.2 47.8 469 67-619 31-518 (822)
26 PRK10049 pgaA outer membrane p 99.7 7.1E-14 1.5E-18 157.7 45.1 376 65-463 44-457 (765)
27 PRK14574 hmsH outer membrane p 99.7 2.2E-12 4.7E-17 142.6 51.9 420 166-641 45-507 (822)
28 KOG2003 TPR repeat-containing 99.7 1.9E-13 4.1E-18 131.2 36.1 455 153-633 199-709 (840)
29 KOG2076 RNA polymerase III tra 99.7 3.3E-11 7.2E-16 126.5 47.8 513 73-633 141-720 (895)
30 KOG4422 Uncharacterized conser 99.6 7.3E-13 1.6E-17 126.6 29.9 344 255-669 115-481 (625)
31 KOG2076 RNA polymerase III tra 99.5 7.6E-10 1.7E-14 116.5 43.2 297 162-462 146-478 (895)
32 KOG0495 HAT repeat protein [RN 99.5 1.6E-08 3.5E-13 102.6 49.9 316 258-636 518-869 (913)
33 TIGR00540 hemY_coli hemY prote 99.5 1.7E-10 3.8E-15 120.7 34.2 283 168-460 97-397 (409)
34 KOG2003 TPR repeat-containing 99.5 5E-10 1.1E-14 108.1 33.6 272 265-598 428-709 (840)
35 PRK10747 putative protoheme IX 99.5 3.1E-10 6.8E-15 118.0 34.8 220 228-460 160-388 (398)
36 KOG2047 mRNA splicing factor [ 99.5 5.2E-08 1.1E-12 98.8 48.3 470 71-611 102-650 (835)
37 PRK10747 putative protoheme IX 99.4 1.7E-09 3.6E-14 112.6 36.7 79 529-610 310-388 (398)
38 KOG0495 HAT repeat protein [RN 99.4 4.6E-07 1E-11 92.4 51.3 398 175-639 366-774 (913)
39 KOG1126 DNA-binding cell divis 99.4 7.2E-11 1.6E-15 120.2 24.5 200 215-427 415-620 (638)
40 PF13429 TPR_15: Tetratricopep 99.4 2.3E-12 4.9E-17 128.1 13.3 156 121-285 16-175 (280)
41 PF13429 TPR_15: Tetratricopep 99.4 3E-12 6.4E-17 127.2 13.3 250 167-460 20-275 (280)
42 TIGR00540 hemY_coli hemY prote 99.4 1.5E-09 3.2E-14 113.7 33.9 284 233-610 96-397 (409)
43 KOG0547 Translocase of outer m 99.4 8E-09 1.7E-13 101.3 35.8 361 71-462 115-491 (606)
44 KOG1155 Anaphase-promoting com 99.4 4.9E-09 1.1E-13 102.1 33.8 333 74-456 167-530 (559)
45 KOG1126 DNA-binding cell divis 99.4 2.5E-10 5.5E-15 116.3 26.0 282 236-577 334-620 (638)
46 KOG1915 Cell cycle control pro 99.4 1.1E-07 2.5E-12 93.0 42.7 416 168-650 86-536 (677)
47 KOG1155 Anaphase-promoting com 99.4 3E-08 6.6E-13 96.8 37.9 282 167-462 176-461 (559)
48 PF13041 PPR_2: PPR repeat fam 99.4 1.9E-12 4.1E-17 89.4 6.8 49 581-629 1-49 (50)
49 KOG0547 Translocase of outer m 99.3 1.6E-08 3.6E-13 99.2 34.1 396 123-611 125-565 (606)
50 COG2956 Predicted N-acetylgluc 99.3 5.2E-09 1.1E-13 97.4 28.7 223 235-461 49-277 (389)
51 PF13041 PPR_2: PPR repeat fam 99.3 3.8E-12 8.3E-17 87.9 6.3 50 546-595 1-50 (50)
52 KOG4318 Bicoid mRNA stability 99.3 1.5E-08 3.4E-13 106.3 34.9 530 61-639 17-586 (1088)
53 COG3071 HemY Uncharacterized e 99.3 6.2E-09 1.3E-13 100.0 29.3 197 218-426 184-389 (400)
54 COG2956 Predicted N-acetylgluc 99.3 1.4E-08 3.1E-13 94.5 29.6 151 304-465 195-350 (389)
55 KOG4318 Bicoid mRNA stability 99.3 2.2E-10 4.7E-15 119.8 19.7 86 545-633 201-286 (1088)
56 KOG1915 Cell cycle control pro 99.2 3.4E-06 7.4E-11 82.9 49.5 472 124-668 84-604 (677)
57 COG3071 HemY Uncharacterized e 99.2 8.4E-07 1.8E-11 85.7 38.7 288 292-640 87-383 (400)
58 KOG1840 Kinesin light chain [C 99.2 2.4E-09 5.1E-14 110.7 22.3 252 71-354 199-480 (508)
59 PRK12370 invasion protein regu 99.2 1.4E-08 3.1E-13 110.6 28.3 186 85-282 275-467 (553)
60 KOG1156 N-terminal acetyltrans 99.2 1.2E-06 2.6E-11 89.6 38.5 455 72-610 9-509 (700)
61 KOG1840 Kinesin light chain [C 99.2 1.9E-08 4E-13 104.2 25.8 215 218-458 196-434 (508)
62 KOG1173 Anaphase-promoting com 99.2 3.8E-06 8.2E-11 84.7 40.8 505 71-667 16-533 (611)
63 TIGR02521 type_IV_pilW type IV 99.1 3.6E-08 7.9E-13 95.4 26.9 199 222-460 32-230 (234)
64 TIGR02521 type_IV_pilW type IV 99.1 1E-08 2.2E-13 99.3 22.8 196 71-283 31-230 (234)
65 PRK12370 invasion protein regu 99.1 1.8E-08 3.8E-13 109.9 26.4 212 169-426 275-501 (553)
66 KOG2376 Signal recognition par 99.1 7.7E-06 1.7E-10 83.0 41.4 446 158-676 15-512 (652)
67 KOG3785 Uncharacterized conser 99.1 1.6E-06 3.5E-11 81.9 34.2 183 79-285 30-214 (557)
68 KOG1156 N-terminal acetyltrans 99.1 5.7E-06 1.2E-10 84.8 40.2 423 168-614 20-470 (700)
69 COG3063 PilF Tfp pilus assembl 99.1 6.2E-08 1.3E-12 86.3 21.8 197 71-284 35-235 (250)
70 KOG1173 Anaphase-promoting com 99.1 3.1E-07 6.8E-12 92.3 28.6 280 157-445 246-534 (611)
71 KOG2047 mRNA splicing factor [ 99.1 3.7E-05 8E-10 78.8 49.0 345 56-461 13-415 (835)
72 KOG2376 Signal recognition par 99.0 8.8E-06 1.9E-10 82.6 38.3 461 75-609 16-517 (652)
73 KOG1129 TPR repeat-containing 99.0 7.2E-08 1.6E-12 89.8 21.7 223 117-352 227-457 (478)
74 KOG1174 Anaphase-promoting com 99.0 3.6E-05 7.8E-10 74.7 38.3 301 222-617 195-503 (564)
75 KOG3785 Uncharacterized conser 99.0 1.9E-05 4.1E-10 74.9 35.6 447 123-660 32-498 (557)
76 KOG0624 dsRNA-activated protei 98.9 1.9E-06 4.1E-11 81.2 27.1 328 71-463 38-371 (504)
77 cd05804 StaR_like StaR_like; a 98.9 3.7E-06 8E-11 87.2 31.8 206 66-285 2-215 (355)
78 PF12569 NARP1: NMDA receptor- 98.9 8.7E-06 1.9E-10 85.8 33.9 65 228-295 11-75 (517)
79 KOG1174 Anaphase-promoting com 98.9 3.3E-06 7.1E-11 81.6 26.4 288 78-392 203-500 (564)
80 PF12569 NARP1: NMDA receptor- 98.9 4.3E-06 9.2E-11 88.1 29.9 284 165-462 14-334 (517)
81 KOG1127 TPR repeat-containing 98.9 5.3E-05 1.1E-09 81.6 37.2 210 380-641 800-1030(1238)
82 PRK11189 lipoprotein NlpI; Pro 98.8 1.1E-06 2.3E-11 87.5 24.1 64 221-285 98-161 (296)
83 PRK11189 lipoprotein NlpI; Pro 98.8 1.8E-06 4E-11 85.9 25.7 203 222-438 65-275 (296)
84 KOG1129 TPR repeat-containing 98.8 4.6E-07 9.9E-12 84.6 19.3 108 527-636 338-447 (478)
85 KOG3616 Selective LIM binding 98.8 6.9E-05 1.5E-09 77.8 35.7 297 224-636 618-926 (1636)
86 KOG4340 Uncharacterized conser 98.8 2.9E-06 6.4E-11 78.3 23.3 349 74-460 13-373 (459)
87 KOG3617 WD40 and TPR repeat-co 98.8 0.00025 5.3E-09 74.9 39.4 507 80-668 809-1379(1416)
88 PF12854 PPR_1: PPR repeat 98.8 7.3E-09 1.6E-13 63.8 4.1 32 578-609 2-33 (34)
89 KOG4162 Predicted calmodulin-b 98.8 0.00044 9.5E-09 73.0 46.6 479 123-644 237-780 (799)
90 COG3063 PilF Tfp pilus assembl 98.8 9E-06 2E-10 72.8 24.1 200 222-461 36-235 (250)
91 KOG4162 Predicted calmodulin-b 98.7 0.00018 3.9E-09 75.8 36.0 372 70-461 322-782 (799)
92 cd05804 StaR_like StaR_like; a 98.7 6E-05 1.3E-09 78.2 33.0 188 122-317 15-214 (355)
93 PF12854 PPR_1: PPR repeat 98.7 1.9E-08 4E-13 62.0 3.8 34 542-575 1-34 (34)
94 KOG0624 dsRNA-activated protei 98.7 1.3E-05 2.9E-10 75.6 23.8 294 58-392 60-370 (504)
95 KOG1914 mRNA cleavage and poly 98.7 0.00077 1.7E-08 68.2 40.0 186 379-611 309-500 (656)
96 PRK04841 transcriptional regul 98.6 0.00012 2.6E-09 86.4 36.4 348 71-459 341-717 (903)
97 KOG1125 TPR repeat-containing 98.6 8.5E-06 1.8E-10 82.7 21.8 94 76-185 290-383 (579)
98 PRK04841 transcriptional regul 98.6 0.00025 5.5E-09 83.7 38.3 374 197-613 347-761 (903)
99 PF04733 Coatomer_E: Coatomer 98.6 3.8E-06 8.3E-11 82.3 18.8 218 227-462 41-265 (290)
100 KOG4340 Uncharacterized conser 98.6 0.00013 2.7E-09 67.8 27.0 64 547-610 309-373 (459)
101 KOG0985 Vesicle coat protein c 98.6 0.00073 1.6E-08 73.1 36.0 504 70-639 605-1187(1666)
102 KOG2053 Mitochondrial inherita 98.6 0.0021 4.5E-08 69.3 45.7 221 80-319 18-256 (932)
103 KOG0985 Vesicle coat protein c 98.5 0.0017 3.7E-08 70.5 35.4 290 117-458 988-1304(1666)
104 KOG3616 Selective LIM binding 98.5 0.0021 4.4E-08 67.3 34.8 266 71-386 661-931 (1636)
105 KOG3617 WD40 and TPR repeat-co 98.5 0.00038 8.3E-09 73.6 29.5 385 231-730 738-1179(1416)
106 TIGR03302 OM_YfiO outer membra 98.5 2.9E-05 6.2E-10 75.0 20.7 194 70-285 32-232 (235)
107 KOG0548 Molecular co-chaperone 98.4 0.0029 6.3E-08 64.3 34.3 349 76-461 7-420 (539)
108 PF04733 Coatomer_E: Coatomer 98.4 1.4E-05 3.1E-10 78.2 17.9 148 231-392 112-265 (290)
109 KOG1127 TPR repeat-containing 98.4 0.0022 4.8E-08 69.7 33.5 379 51-459 577-993 (1238)
110 KOG1125 TPR repeat-containing 98.4 0.0002 4.3E-09 73.1 24.5 249 194-456 288-565 (579)
111 PLN02789 farnesyltranstransfer 98.4 0.0002 4.4E-09 71.2 24.1 200 168-410 50-267 (320)
112 PRK10370 formate-dependent nit 98.3 4.1E-05 8.9E-10 70.7 17.8 148 117-286 20-174 (198)
113 KOG1070 rRNA processing protei 98.3 5.8E-05 1.3E-09 84.2 20.4 221 53-289 1441-1667(1710)
114 KOG1128 Uncharacterized conser 98.3 8.6E-05 1.9E-09 77.6 20.4 115 549-668 520-635 (777)
115 COG5010 TadD Flp pilus assembl 98.3 0.0002 4.3E-09 65.9 19.5 167 217-425 63-229 (257)
116 KOG1070 rRNA processing protei 98.3 0.00044 9.5E-09 77.5 25.5 227 216-453 1453-1691(1710)
117 PF08579 RPM2: Mitochondrial r 98.2 3.2E-05 7E-10 60.9 12.0 85 587-671 29-119 (120)
118 PRK14720 transcript cleavage f 98.2 0.00031 6.7E-09 78.0 24.1 236 66-374 27-268 (906)
119 KOG1128 Uncharacterized conser 98.2 0.00045 9.8E-09 72.4 23.7 218 222-464 399-618 (777)
120 PRK15179 Vi polysaccharide bio 98.2 8.9E-05 1.9E-09 81.5 19.8 190 58-263 32-229 (694)
121 PRK15179 Vi polysaccharide bio 98.2 0.00013 2.8E-09 80.3 20.6 136 159-298 90-229 (694)
122 PLN02789 farnesyltranstransfer 98.1 0.004 8.7E-08 62.1 27.8 207 331-595 44-267 (320)
123 TIGR00756 PPR pentatricopeptid 98.1 4.1E-06 9E-11 52.6 4.5 33 585-617 2-34 (35)
124 TIGR03302 OM_YfiO outer membra 98.1 0.00029 6.2E-09 68.0 19.5 187 221-462 33-232 (235)
125 KOG3060 Uncharacterized conser 98.1 0.0006 1.3E-08 62.3 19.2 184 84-285 25-220 (289)
126 PRK14720 transcript cleavage f 98.1 0.0024 5.3E-08 71.1 27.9 168 255-462 30-198 (906)
127 PRK15359 type III secretion sy 98.1 3.8E-05 8.3E-10 67.0 11.5 116 62-199 19-134 (144)
128 COG5010 TadD Flp pilus assembl 98.1 0.00035 7.5E-09 64.4 17.8 162 187-389 63-228 (257)
129 KOG0548 Molecular co-chaperone 98.1 0.016 3.5E-07 59.1 33.7 425 123-630 12-471 (539)
130 KOG3081 Vesicle coat complex C 98.1 0.0025 5.5E-08 58.8 22.6 103 529-636 153-259 (299)
131 PRK10370 formate-dependent nit 98.1 0.001 2.2E-08 61.6 20.7 126 304-437 54-182 (198)
132 PF13812 PPR_3: Pentatricopept 98.1 8.1E-06 1.7E-10 50.8 4.5 33 584-616 2-34 (34)
133 TIGR00756 PPR pentatricopeptid 98.0 7.6E-06 1.6E-10 51.4 4.1 35 549-583 1-35 (35)
134 KOG3081 Vesicle coat complex C 98.0 0.0044 9.6E-08 57.3 22.5 242 168-425 21-269 (299)
135 COG4783 Putative Zn-dependent 98.0 0.0086 1.9E-07 60.4 26.1 178 271-458 252-433 (484)
136 KOG2053 Mitochondrial inherita 98.0 0.044 9.6E-07 59.5 43.2 217 168-394 22-257 (932)
137 PF13812 PPR_3: Pentatricopept 98.0 1.2E-05 2.6E-10 50.0 4.1 33 549-581 2-34 (34)
138 PRK15359 type III secretion sy 97.9 0.00048 1E-08 60.1 14.9 113 309-433 13-125 (144)
139 COG4783 Putative Zn-dependent 97.9 0.00078 1.7E-08 67.7 17.0 132 168-318 319-454 (484)
140 PF08579 RPM2: Mitochondrial r 97.8 0.00029 6.2E-09 55.7 10.2 79 552-630 29-116 (120)
141 PF01535 PPR: PPR repeat; Int 97.8 2.4E-05 5.2E-10 47.4 3.1 29 585-613 2-30 (31)
142 TIGR02552 LcrH_SycD type III s 97.8 0.0015 3.2E-08 56.6 15.6 108 323-438 16-123 (135)
143 COG5107 RNA14 Pre-mRNA 3'-end 97.8 0.053 1.1E-06 54.1 34.9 146 432-628 396-545 (660)
144 PF14938 SNAP: Soluble NSF att 97.7 0.0033 7.1E-08 62.2 19.2 177 68-285 32-225 (282)
145 KOG1914 mRNA cleavage and poly 97.7 0.073 1.6E-06 54.5 41.8 130 512-648 364-499 (656)
146 TIGR02552 LcrH_SycD type III s 97.7 0.00053 1.2E-08 59.4 11.8 97 188-285 14-114 (135)
147 PF01535 PPR: PPR repeat; Int 97.7 5.2E-05 1.1E-09 45.9 3.4 31 549-579 1-31 (31)
148 KOG3060 Uncharacterized conser 97.6 0.051 1.1E-06 50.1 23.8 186 235-427 26-220 (289)
149 PF10037 MRP-S27: Mitochondria 97.6 0.00081 1.8E-08 68.6 12.7 120 512-631 63-186 (429)
150 PF06239 ECSIT: Evolutionarily 97.6 0.00068 1.5E-08 60.9 10.4 88 546-633 45-153 (228)
151 PF09295 ChAPs: ChAPs (Chs5p-A 97.6 0.0021 4.6E-08 65.3 15.1 124 152-285 169-297 (395)
152 PF09976 TPR_21: Tetratricopep 97.6 0.0042 9E-08 54.4 15.1 128 326-458 14-143 (145)
153 PF10037 MRP-S27: Mitochondria 97.6 0.0011 2.5E-08 67.5 12.9 126 319-446 61-186 (429)
154 PF09976 TPR_21: Tetratricopep 97.5 0.0025 5.4E-08 55.8 13.6 121 125-281 23-143 (145)
155 PF09295 ChAPs: ChAPs (Chs5p-A 97.5 0.0037 8.1E-08 63.6 16.3 125 326-461 171-296 (395)
156 PF14938 SNAP: Soluble NSF att 97.5 0.0073 1.6E-07 59.8 17.9 199 123-350 45-263 (282)
157 PRK15363 pathogenicity island 97.5 0.001 2.2E-08 57.1 9.8 93 155-249 35-131 (157)
158 PRK10866 outer membrane biogen 97.4 0.027 5.9E-07 53.9 19.5 188 71-283 32-239 (243)
159 TIGR02795 tol_pal_ybgF tol-pal 97.3 0.0039 8.5E-08 52.4 11.6 109 71-191 2-110 (119)
160 PF06239 ECSIT: Evolutionarily 97.3 0.0059 1.3E-07 55.1 12.3 89 361-449 45-154 (228)
161 TIGR02795 tol_pal_ybgF tol-pal 97.2 0.012 2.6E-07 49.4 13.9 101 326-428 4-106 (119)
162 PLN03088 SGT1, suppressor of 97.2 0.0038 8.3E-08 63.8 11.7 88 165-285 12-99 (356)
163 PRK15363 pathogenicity island 97.1 0.0049 1.1E-07 53.0 9.8 97 188-285 32-132 (157)
164 cd00189 TPR Tetratricopeptide 97.1 0.011 2.4E-07 46.9 11.7 88 370-459 7-94 (100)
165 KOG1130 Predicted G-alpha GTPa 97.1 0.04 8.7E-07 54.2 16.6 140 325-464 196-346 (639)
166 KOG1585 Protein required for f 97.1 0.047 1E-06 50.0 15.8 214 65-312 23-250 (308)
167 PF07079 DUF1347: Protein of u 97.1 0.43 9.2E-06 48.2 44.5 457 79-624 14-531 (549)
168 PF13432 TPR_16: Tetratricopep 97.0 0.0018 4E-08 47.4 5.9 59 76-142 2-60 (65)
169 PF13525 YfiO: Outer membrane 97.0 0.039 8.4E-07 51.5 16.1 185 67-276 1-198 (203)
170 PF05843 Suf: Suppressor of fo 97.0 0.015 3.3E-07 57.2 13.9 129 257-391 2-135 (280)
171 cd00189 TPR Tetratricopeptide 97.0 0.012 2.7E-07 46.6 11.5 95 327-427 3-97 (100)
172 KOG0553 TPR repeat-containing 97.0 0.0047 1E-07 58.3 9.4 97 164-264 90-190 (304)
173 PF05843 Suf: Suppressor of fo 97.0 0.019 4.1E-07 56.6 14.2 145 434-628 2-150 (280)
174 PF13424 TPR_12: Tetratricopep 96.9 0.0027 5.9E-08 48.6 6.2 70 71-141 5-74 (78)
175 KOG2041 WD40 repeat protein [G 96.9 0.57 1.2E-05 49.7 24.2 135 123-282 770-904 (1189)
176 PF12895 Apc3: Anaphase-promot 96.9 0.0019 4E-08 50.3 5.3 82 337-423 2-83 (84)
177 KOG1538 Uncharacterized conser 96.9 0.38 8.2E-06 50.5 22.6 180 229-460 606-800 (1081)
178 PF04840 Vps16_C: Vps16, C-ter 96.9 0.55 1.2E-05 46.9 31.3 111 324-458 177-287 (319)
179 PF13414 TPR_11: TPR repeat; P 96.9 0.004 8.7E-08 46.2 6.8 64 71-142 3-67 (69)
180 COG4235 Cytochrome c biogenesi 96.9 0.022 4.8E-07 54.3 12.9 113 59-185 145-257 (287)
181 PF12688 TPR_5: Tetratrico pep 96.9 0.029 6.3E-07 46.5 12.1 99 75-183 5-103 (120)
182 PF12895 Apc3: Anaphase-promot 96.8 0.0026 5.6E-08 49.5 5.5 81 376-458 2-83 (84)
183 KOG0553 TPR repeat-containing 96.8 0.011 2.4E-07 55.9 10.4 83 124-216 92-174 (304)
184 PRK10866 outer membrane biogen 96.8 0.45 9.9E-06 45.6 21.6 60 226-285 37-98 (243)
185 COG4700 Uncharacterized protei 96.8 0.21 4.6E-06 43.8 16.9 125 118-281 94-218 (251)
186 PLN03088 SGT1, suppressor of 96.8 0.047 1E-06 55.9 15.6 102 331-440 9-110 (356)
187 CHL00033 ycf3 photosystem I as 96.8 0.038 8.1E-07 49.9 13.3 64 222-285 36-101 (168)
188 PRK02603 photosystem I assembl 96.7 0.068 1.5E-06 48.4 14.8 86 324-413 35-121 (172)
189 PRK02603 photosystem I assembl 96.7 0.16 3.4E-06 46.0 17.1 91 363-454 35-127 (172)
190 PRK15331 chaperone protein Sic 96.7 0.022 4.8E-07 49.3 10.2 94 154-249 36-133 (165)
191 PRK10803 tol-pal system protei 96.6 0.056 1.2E-06 52.2 14.1 105 71-185 143-247 (263)
192 PF08631 SPO22: Meiosis protei 96.6 0.81 1.8E-05 45.1 23.1 60 81-142 3-65 (278)
193 PF12688 TPR_5: Tetratrico pep 96.6 0.05 1.1E-06 45.1 11.7 105 165-302 11-117 (120)
194 KOG0550 Molecular chaperone (D 96.6 0.26 5.7E-06 48.9 17.9 250 168-428 62-351 (486)
195 PRK10153 DNA-binding transcrip 96.6 0.16 3.4E-06 54.6 18.1 67 321-393 417-483 (517)
196 CHL00033 ycf3 photosystem I as 96.5 0.078 1.7E-06 47.8 13.7 98 324-424 35-139 (168)
197 PLN03098 LPA1 LOW PSII ACCUMUL 96.5 0.1 2.3E-06 53.1 15.1 72 65-142 70-141 (453)
198 PRK10153 DNA-binding transcrip 96.5 0.25 5.4E-06 53.1 19.0 72 546-621 418-489 (517)
199 PF14559 TPR_19: Tetratricopep 96.4 0.013 2.8E-07 43.3 6.6 51 376-427 4-54 (68)
200 PF14559 TPR_19: Tetratricopep 96.4 0.014 3.1E-07 43.1 6.7 63 232-297 2-64 (68)
201 COG4235 Cytochrome c biogenesi 96.4 0.084 1.8E-06 50.4 13.1 113 171-286 138-257 (287)
202 COG3898 Uncharacterized membra 96.4 1.2 2.6E-05 44.1 29.4 80 168-249 133-216 (531)
203 PF03704 BTAD: Bacterial trans 96.4 0.071 1.5E-06 46.7 12.1 123 155-292 6-137 (146)
204 PF13432 TPR_16: Tetratricopep 96.3 0.022 4.7E-07 41.6 7.3 58 227-285 3-60 (65)
205 KOG2796 Uncharacterized conser 96.3 0.96 2.1E-05 42.2 22.8 98 364-461 178-280 (366)
206 PF03704 BTAD: Bacterial trans 96.2 0.12 2.7E-06 45.2 12.9 71 365-436 64-139 (146)
207 KOG1130 Predicted G-alpha GTPa 96.2 0.4 8.7E-06 47.5 16.9 306 76-427 22-344 (639)
208 COG4700 Uncharacterized protei 96.2 0.84 1.8E-05 40.2 16.7 134 320-459 85-219 (251)
209 KOG2796 Uncharacterized conser 96.1 1.2 2.5E-05 41.7 21.1 74 222-295 178-251 (366)
210 PF13414 TPR_11: TPR repeat; P 96.0 0.037 8.1E-07 40.9 7.2 59 365-424 5-64 (69)
211 KOG2280 Vacuolar assembly/sort 95.9 3.4 7.4E-05 44.8 24.9 127 309-458 668-795 (829)
212 PF13371 TPR_9: Tetratricopept 95.9 0.026 5.7E-07 42.3 6.0 58 78-143 2-59 (73)
213 PF12921 ATP13: Mitochondrial 95.9 0.15 3.2E-06 42.9 10.9 87 547-633 1-103 (126)
214 KOG0550 Molecular chaperone (D 95.7 2.5 5.5E-05 42.4 21.9 247 123-392 59-350 (486)
215 PF07079 DUF1347: Protein of u 95.7 2.7 5.9E-05 42.7 35.5 123 529-663 396-532 (549)
216 KOG3941 Intermediate in Toll s 95.7 0.11 2.4E-06 48.6 10.2 104 512-634 64-174 (406)
217 PF13170 DUF4003: Protein of u 95.7 1.3 2.8E-05 43.7 18.3 147 514-662 59-223 (297)
218 PF13424 TPR_12: Tetratricopep 95.7 0.035 7.7E-07 42.3 6.1 68 113-183 5-74 (78)
219 PF04840 Vps16_C: Vps16, C-ter 95.6 2.8 6E-05 42.0 29.9 56 168-233 13-68 (319)
220 PF12921 ATP13: Mitochondrial 95.6 0.22 4.7E-06 41.8 11.0 83 582-667 1-99 (126)
221 COG4785 NlpI Lipoprotein NlpI, 95.6 0.49 1.1E-05 42.7 13.3 29 257-285 238-266 (297)
222 PRK10803 tol-pal system protei 95.5 0.28 6.1E-06 47.5 12.7 100 326-427 145-246 (263)
223 PF13525 YfiO: Outer membrane 95.3 2.3 5E-05 39.6 18.0 64 222-285 6-71 (203)
224 PF04053 Coatomer_WDAD: Coatom 95.2 0.5 1.1E-05 49.5 14.5 162 76-282 266-428 (443)
225 COG4105 ComL DNA uptake lipopr 95.1 3.1 6.7E-05 39.2 18.0 189 71-285 34-233 (254)
226 PF13512 TPR_18: Tetratricopep 95.1 0.52 1.1E-05 40.1 11.3 76 67-149 6-81 (142)
227 KOG3941 Intermediate in Toll s 95.1 0.2 4.4E-06 47.0 9.6 78 504-598 96-173 (406)
228 COG4649 Uncharacterized protei 95.1 2.2 4.7E-05 37.3 15.1 121 165-285 68-196 (221)
229 KOG2041 WD40 repeat protein [G 95.0 6.1 0.00013 42.4 25.4 52 584-635 1022-1074(1189)
230 KOG1585 Protein required for f 95.0 0.94 2E-05 41.8 13.5 206 113-348 31-251 (308)
231 PF13371 TPR_9: Tetratricopept 95.0 0.18 4E-06 37.6 8.1 54 373-427 5-58 (73)
232 PLN03098 LPA1 LOW PSII ACCUMUL 95.0 0.6 1.3E-05 47.8 13.8 66 321-392 72-141 (453)
233 COG3898 Uncharacterized membra 94.9 4.5 9.6E-05 40.3 30.5 292 72-392 83-392 (531)
234 PRK15331 chaperone protein Sic 94.4 0.21 4.5E-06 43.5 7.6 96 188-284 34-133 (165)
235 PF07035 Mic1: Colon cancer-as 94.3 3.5 7.6E-05 36.4 15.2 133 241-390 14-147 (167)
236 PF10300 DUF3808: Protein of u 94.3 2.1 4.6E-05 45.6 16.7 130 117-249 192-333 (468)
237 PF13170 DUF4003: Protein of u 94.3 1.8 4E-05 42.7 14.9 133 414-590 78-224 (297)
238 PRK11906 transcriptional regul 94.2 4.1 8.8E-05 42.1 17.4 111 235-349 318-432 (458)
239 KOG2114 Vacuolar assembly/sort 93.9 13 0.00027 41.2 25.3 55 402-460 709-763 (933)
240 COG1729 Uncharacterized protei 93.9 0.68 1.5E-05 43.9 10.5 102 73-185 144-245 (262)
241 KOG4555 TPR repeat-containing 93.6 1.9 4E-05 35.6 11.0 86 201-286 53-145 (175)
242 KOG1538 Uncharacterized conser 93.6 7.9 0.00017 41.3 18.2 41 173-217 618-658 (1081)
243 PF13281 DUF4071: Domain of un 93.5 9.7 0.00021 38.7 21.2 78 222-299 142-225 (374)
244 PF13428 TPR_14: Tetratricopep 93.5 0.16 3.5E-06 33.4 4.3 35 72-108 2-36 (44)
245 KOG0543 FKBP-type peptidyl-pro 93.2 3.5 7.5E-05 41.5 14.6 128 332-462 216-355 (397)
246 KOG0543 FKBP-type peptidyl-pro 93.1 1.1 2.4E-05 44.9 11.0 114 74-197 211-331 (397)
247 PF13431 TPR_17: Tetratricopep 93.0 0.071 1.5E-06 32.7 1.8 31 60-91 3-33 (34)
248 PF08631 SPO22: Meiosis protei 93.0 10 0.00022 37.4 25.4 177 123-324 3-192 (278)
249 KOG1920 IkappaB kinase complex 93.0 17 0.00038 42.0 20.9 22 368-389 1004-1025(1265)
250 COG1729 Uncharacterized protei 92.8 1.2 2.7E-05 42.2 10.4 92 165-285 151-244 (262)
251 PF10300 DUF3808: Protein of u 92.6 3.2 6.9E-05 44.4 14.7 168 73-249 190-375 (468)
252 KOG2114 Vacuolar assembly/sort 92.5 21 0.00045 39.7 28.3 181 72-283 335-517 (933)
253 COG2909 MalT ATP-dependent tra 92.4 20 0.00044 40.1 20.1 111 71-184 415-526 (894)
254 smart00299 CLH Clathrin heavy 92.1 7.2 0.00016 33.6 15.1 42 226-268 12-53 (140)
255 KOG1941 Acetylcholine receptor 92.0 5.5 0.00012 39.3 13.7 207 70-282 42-272 (518)
256 KOG2610 Uncharacterized conser 91.8 3.7 8E-05 40.0 12.2 151 123-282 113-273 (491)
257 PF13281 DUF4071: Domain of un 91.8 17 0.00036 37.1 21.6 81 328-409 145-228 (374)
258 COG3629 DnrI DNA-binding trans 91.7 2.1 4.6E-05 41.3 10.8 77 550-627 155-236 (280)
259 smart00299 CLH Clathrin heavy 91.7 8 0.00017 33.3 15.0 25 550-574 71-95 (140)
260 PF04053 Coatomer_WDAD: Coatom 91.5 5.9 0.00013 41.8 14.8 27 323-349 346-372 (443)
261 PRK11906 transcriptional regul 91.4 4 8.6E-05 42.2 12.8 62 221-284 338-400 (458)
262 COG4649 Uncharacterized protei 90.8 11 0.00023 33.2 15.0 122 231-352 68-195 (221)
263 KOG4555 TPR repeat-containing 90.8 8.6 0.00019 31.9 12.0 90 333-428 52-145 (175)
264 PF10602 RPN7: 26S proteasome 90.7 2.3 5.1E-05 38.3 9.7 68 70-142 35-102 (177)
265 KOG4234 TPR repeat-containing 90.7 3.6 7.7E-05 36.9 10.2 97 78-185 102-198 (271)
266 COG3118 Thioredoxin domain-con 90.6 14 0.00031 35.6 14.8 117 164-285 143-265 (304)
267 KOG2610 Uncharacterized conser 90.4 8.1 0.00017 37.7 13.0 115 233-349 115-234 (491)
268 COG3118 Thioredoxin domain-con 90.4 18 0.00039 35.0 16.9 145 122-275 143-291 (304)
269 PF13512 TPR_18: Tetratricopep 90.4 7.5 0.00016 33.2 11.6 75 334-410 20-94 (142)
270 PF10602 RPN7: 26S proteasome 90.3 2.5 5.5E-05 38.1 9.6 63 222-284 37-101 (177)
271 PF13176 TPR_7: Tetratricopept 90.3 0.31 6.7E-06 30.3 2.6 28 73-100 1-28 (36)
272 PF04184 ST7: ST7 protein; In 89.7 27 0.00059 36.5 16.9 75 224-298 262-338 (539)
273 PF13428 TPR_14: Tetratricopep 89.7 1.3 2.9E-05 29.0 5.4 39 223-262 3-41 (44)
274 PF09613 HrpB1_HrpK: Bacterial 89.5 9.6 0.00021 33.3 11.8 37 154-192 9-45 (160)
275 COG0457 NrfG FOG: TPR repeat [ 89.1 20 0.00042 33.7 24.4 199 223-427 61-265 (291)
276 TIGR02561 HrpB1_HrpK type III 89.0 9 0.00019 32.8 10.9 63 154-218 9-71 (153)
277 KOG1258 mRNA processing protei 88.8 37 0.0008 36.4 35.6 393 172-636 62-493 (577)
278 PF00515 TPR_1: Tetratricopept 88.7 1 2.3E-05 27.3 4.2 32 72-105 2-33 (34)
279 COG4105 ComL DNA uptake lipopr 88.7 22 0.00048 33.7 21.8 178 228-426 41-232 (254)
280 PF07035 Mic1: Colon cancer-as 88.6 17 0.00036 32.2 15.4 39 418-456 14-52 (167)
281 COG4785 NlpI Lipoprotein NlpI, 88.4 20 0.00044 32.9 13.4 67 218-285 96-162 (297)
282 COG3629 DnrI DNA-binding trans 88.1 5.9 0.00013 38.4 10.6 78 364-442 154-236 (280)
283 PF07719 TPR_2: Tetratricopept 88.0 1.2 2.6E-05 26.9 4.2 29 72-100 2-30 (34)
284 KOG2280 Vacuolar assembly/sort 87.8 48 0.001 36.5 27.8 48 403-454 689-736 (829)
285 KOG1941 Acetylcholine receptor 87.8 1.9 4.1E-05 42.3 7.0 145 76-248 127-273 (518)
286 PF09205 DUF1955: Domain of un 87.7 8 0.00017 32.2 9.5 68 220-288 85-152 (161)
287 PF09613 HrpB1_HrpK: Bacterial 87.6 18 0.00038 31.7 12.1 90 332-431 18-110 (160)
288 PF13176 TPR_7: Tetratricopept 87.6 1.3 2.8E-05 27.5 4.0 23 224-246 2-24 (36)
289 COG5107 RNA14 Pre-mRNA 3'-end 87.3 38 0.00082 34.8 33.9 419 188-637 39-521 (660)
290 KOG1550 Extracellular protein 87.1 52 0.0011 36.2 20.4 174 171-352 228-425 (552)
291 PF13762 MNE1: Mitochondrial s 87.0 13 0.00028 31.9 10.9 84 586-671 42-130 (145)
292 PF13431 TPR_17: Tetratricopep 87.0 0.44 9.5E-06 29.2 1.6 24 218-241 10-33 (34)
293 PF04097 Nic96: Nup93/Nic96; 86.1 63 0.0014 36.1 22.7 218 190-428 110-357 (613)
294 KOG0276 Vesicle coat complex C 84.9 5.8 0.00013 41.9 9.2 153 80-282 595-747 (794)
295 KOG1464 COP9 signalosome, subu 84.8 36 0.00079 32.3 15.2 55 83-141 39-93 (440)
296 KOG4570 Uncharacterized conser 84.4 5.1 0.00011 38.7 7.9 107 319-428 59-165 (418)
297 PF09205 DUF1955: Domain of un 84.1 24 0.00051 29.6 14.4 63 366-429 89-151 (161)
298 PF13374 TPR_10: Tetratricopep 83.3 2.4 5.1E-05 27.1 4.0 30 71-100 2-31 (42)
299 KOG1920 IkappaB kinase complex 82.8 1.1E+02 0.0023 36.1 23.8 114 321-458 932-1051(1265)
300 PF00515 TPR_1: Tetratricopept 82.5 3.6 7.8E-05 24.8 4.4 27 585-611 3-29 (34)
301 TIGR02561 HrpB1_HrpK type III 82.4 31 0.00068 29.7 12.4 50 336-393 22-74 (153)
302 TIGR02508 type_III_yscG type I 81.3 16 0.00035 28.7 8.1 86 236-327 20-105 (115)
303 COG2976 Uncharacterized protei 81.1 11 0.00024 33.9 8.3 58 227-286 132-189 (207)
304 PF13174 TPR_6: Tetratricopept 80.2 2.6 5.7E-05 25.1 3.2 29 73-101 2-30 (33)
305 KOG0276 Vesicle coat complex C 79.8 50 0.0011 35.4 13.6 82 323-423 665-746 (794)
306 COG2976 Uncharacterized protei 79.5 49 0.0011 30.0 13.2 95 330-428 95-189 (207)
307 PF10345 Cohesin_load: Cohesin 79.2 1.1E+02 0.0025 34.2 42.4 184 67-283 55-252 (608)
308 PF04184 ST7: ST7 protein; In 78.8 92 0.002 32.9 19.3 75 366-440 262-338 (539)
309 COG2909 MalT ATP-dependent tra 78.7 1.3E+02 0.0027 34.3 32.2 266 188-462 344-647 (894)
310 PF13374 TPR_10: Tetratricopep 78.4 5.7 0.00012 25.2 4.6 27 584-610 3-29 (42)
311 KOG4570 Uncharacterized conser 77.7 21 0.00046 34.7 9.5 101 251-352 59-163 (418)
312 PF07719 TPR_2: Tetratricopept 77.6 6.4 0.00014 23.5 4.4 26 586-611 4-29 (34)
313 TIGR02508 type_III_yscG type I 77.5 29 0.00062 27.4 8.4 61 370-437 46-106 (115)
314 PF02259 FAT: FAT domain; Int 77.1 90 0.002 31.9 18.7 66 546-611 144-212 (352)
315 PF07721 TPR_4: Tetratricopept 76.7 3.4 7.4E-05 23.3 2.6 23 73-95 3-25 (26)
316 KOG1586 Protein required for f 76.1 69 0.0015 30.0 20.9 22 266-287 164-185 (288)
317 PF11207 DUF2989: Protein of u 75.9 21 0.00046 32.5 8.6 19 362-380 177-195 (203)
318 PF13181 TPR_8: Tetratricopept 75.5 5.4 0.00012 24.0 3.6 29 72-100 2-30 (34)
319 COG4455 ImpE Protein of avirul 75.2 17 0.00037 33.3 7.7 76 75-160 5-80 (273)
320 PF02284 COX5A: Cytochrome c o 74.6 34 0.00073 27.2 8.2 34 602-635 29-62 (108)
321 cd00923 Cyt_c_Oxidase_Va Cytoc 74.6 25 0.00053 27.6 7.4 45 566-610 25-69 (103)
322 PF13762 MNE1: Mitochondrial s 74.5 56 0.0012 28.2 12.0 97 314-410 27-127 (145)
323 KOG4234 TPR repeat-containing 74.2 33 0.00071 31.1 9.1 94 333-427 104-197 (271)
324 COG1747 Uncharacterized N-term 74.0 1.2E+02 0.0027 31.9 23.4 178 188-373 63-249 (711)
325 PF04190 DUF410: Protein of un 73.5 92 0.002 30.3 16.5 28 189-216 88-115 (260)
326 PF10345 Cohesin_load: Cohesin 73.0 1.6E+02 0.0036 32.9 42.1 49 410-458 373-429 (608)
327 PF00637 Clathrin: Region in C 72.9 2 4.3E-05 37.3 1.6 87 368-461 12-98 (143)
328 PF02284 COX5A: Cytochrome c o 72.4 38 0.00083 26.9 8.0 46 307-352 28-73 (108)
329 PRK09687 putative lyase; Provi 72.4 1E+02 0.0022 30.3 27.0 124 321-458 34-166 (280)
330 KOG1550 Extracellular protein 72.0 1.6E+02 0.0035 32.4 21.4 50 528-579 379-428 (552)
331 PF08424 NRDE-2: NRDE-2, neces 71.8 45 0.00098 33.6 11.1 120 61-187 56-186 (321)
332 cd00923 Cyt_c_Oxidase_Va Cytoc 70.7 50 0.0011 26.0 9.3 61 601-665 25-85 (103)
333 PF11207 DUF2989: Protein of u 70.6 87 0.0019 28.7 12.9 107 523-637 88-197 (203)
334 COG0457 NrfG FOG: TPR repeat [ 70.5 91 0.002 28.9 26.0 224 234-462 36-265 (291)
335 PF02259 FAT: FAT domain; Int 70.4 1.3E+02 0.0028 30.7 18.5 66 396-461 144-212 (352)
336 PF07575 Nucleopor_Nup85: Nup8 70.0 1.8E+02 0.004 32.2 19.2 77 309-391 390-466 (566)
337 KOG0545 Aryl-hydrocarbon recep 67.3 1.1E+02 0.0025 28.8 11.3 27 159-185 234-260 (329)
338 KOG1586 Protein required for f 66.6 1.2E+02 0.0025 28.6 21.3 73 597-669 128-209 (288)
339 PF06552 TOM20_plant: Plant sp 66.4 42 0.00092 30.0 8.1 64 579-653 64-139 (186)
340 PF13174 TPR_6: Tetratricopept 66.2 8.7 0.00019 22.7 3.0 26 224-249 3-28 (33)
341 PF13181 TPR_8: Tetratricopept 65.9 15 0.00034 21.8 4.1 27 223-249 3-29 (34)
342 KOG2005 26S proteasome regulat 63.7 2.3E+02 0.0051 31.1 26.2 137 512-651 502-652 (878)
343 PF00637 Clathrin: Region in C 63.5 2.3 4.9E-05 36.9 -0.1 76 554-636 13-88 (143)
344 PF04097 Nic96: Nup93/Nic96; 63.3 2.2E+02 0.0047 32.0 15.1 175 555-737 265-455 (613)
345 COG3947 Response regulator con 62.4 1.6E+02 0.0034 28.8 15.9 60 401-461 282-341 (361)
346 PF11848 DUF3368: Domain of un 61.9 33 0.00071 23.0 5.3 30 596-625 15-44 (48)
347 PF14689 SPOB_a: Sensor_kinase 61.2 28 0.0006 24.9 5.2 46 340-391 6-51 (62)
348 PF09477 Type_III_YscG: Bacter 61.1 86 0.0019 25.3 8.9 81 234-319 19-99 (116)
349 PF13929 mRNA_stabil: mRNA sta 61.0 1.7E+02 0.0037 28.6 16.9 66 543-608 197-263 (292)
350 PRK15180 Vi polysaccharide bio 60.9 1E+02 0.0023 32.0 10.7 128 290-424 290-417 (831)
351 TIGR03504 FimV_Cterm FimV C-te 60.8 20 0.00044 23.5 3.9 22 370-391 6-27 (44)
352 smart00028 TPR Tetratricopepti 60.7 13 0.00027 21.1 3.1 29 72-100 2-30 (34)
353 TIGR03504 FimV_Cterm FimV C-te 59.8 22 0.00047 23.3 4.0 25 226-250 4-28 (44)
354 PF04910 Tcf25: Transcriptiona 58.5 2.2E+02 0.0049 29.2 14.9 123 153-284 38-167 (360)
355 PHA02875 ankyrin repeat protei 58.3 66 0.0014 33.9 9.9 67 387-457 19-89 (413)
356 COG1747 Uncharacterized N-term 57.7 2.6E+02 0.0057 29.7 21.3 172 360-578 63-235 (711)
357 KOG0687 26S proteasome regulat 56.7 2.1E+02 0.0046 28.4 13.9 179 127-332 36-224 (393)
358 KOG4642 Chaperone-dependent E3 56.7 1.3E+02 0.0029 28.4 9.7 78 168-247 23-104 (284)
359 KOG4648 Uncharacterized conser 56.0 73 0.0016 31.6 8.4 92 332-432 105-197 (536)
360 PF10579 Rapsyn_N: Rapsyn N-te 55.6 39 0.00084 25.4 5.1 46 560-605 18-65 (80)
361 KOG2066 Vacuolar assembly/sort 55.3 3.5E+02 0.0076 30.5 27.1 71 198-272 363-439 (846)
362 KOG4648 Uncharacterized conser 55.3 36 0.00079 33.5 6.3 87 372-461 106-193 (536)
363 PF13929 mRNA_stabil: mRNA sta 55.2 2.1E+02 0.0046 28.0 17.9 121 320-443 160-288 (292)
364 PF14853 Fis1_TPR_C: Fis1 C-te 55.0 67 0.0015 22.1 6.2 34 73-108 3-36 (53)
365 PF11846 DUF3366: Domain of un 54.7 61 0.0013 29.8 7.8 52 560-611 120-172 (193)
366 COG4455 ImpE Protein of avirul 54.0 83 0.0018 29.2 7.9 76 550-627 3-81 (273)
367 PF00244 14-3-3: 14-3-3 protei 53.8 2.1E+02 0.0045 27.4 11.5 58 226-283 6-64 (236)
368 PF06552 TOM20_plant: Plant sp 53.7 56 0.0012 29.2 6.7 75 237-319 51-137 (186)
369 COG3947 Response regulator con 53.2 2.3E+02 0.005 27.7 16.1 75 585-660 281-357 (361)
370 KOG4521 Nuclear pore complex, 53.0 2.6E+02 0.0056 33.0 13.1 56 224-279 986-1044(1480)
371 PF12862 Apc5: Anaphase-promot 52.3 52 0.0011 25.9 6.0 61 81-142 8-70 (94)
372 PF09670 Cas_Cas02710: CRISPR- 51.4 1.3E+02 0.0028 31.2 10.3 60 119-184 137-198 (379)
373 PF13934 ELYS: Nuclear pore co 51.1 1.8E+02 0.0038 27.6 10.3 105 154-269 78-185 (226)
374 KOG0686 COP9 signalosome, subu 50.2 3.1E+02 0.0066 28.3 19.0 66 325-392 151-216 (466)
375 KOG4642 Chaperone-dependent E3 50.2 89 0.0019 29.4 7.6 76 58-142 32-107 (284)
376 PF11848 DUF3368: Domain of un 50.1 60 0.0013 21.7 5.0 33 559-591 13-45 (48)
377 PF07163 Pex26: Pex26 protein; 50.1 2.3E+02 0.005 27.5 10.5 50 407-456 127-181 (309)
378 KOG1258 mRNA processing protei 50.0 3.7E+02 0.0081 29.2 36.5 113 127-249 59-179 (577)
379 COG5108 RPO41 Mitochondrial DN 49.2 1E+02 0.0022 33.6 8.8 78 553-630 33-115 (1117)
380 PF10579 Rapsyn_N: Rapsyn N-te 48.9 62 0.0013 24.4 5.3 46 233-278 18-65 (80)
381 COG5159 RPN6 26S proteasome re 48.9 2.6E+02 0.0057 27.2 19.6 139 123-282 13-151 (421)
382 PF14689 SPOB_a: Sensor_kinase 47.2 46 0.001 23.8 4.4 25 586-610 26-50 (62)
383 COG5187 RPN7 26S proteasome re 46.9 2.9E+02 0.0062 27.0 14.4 137 287-426 77-220 (412)
384 KOG2066 Vacuolar assembly/sort 46.4 4.8E+02 0.01 29.5 26.0 59 77-141 362-420 (846)
385 KOG2297 Predicted translation 45.9 3.1E+02 0.0066 27.1 18.0 66 560-635 267-338 (412)
386 PRK10564 maltose regulon perip 44.2 45 0.00097 32.6 5.1 45 580-624 253-298 (303)
387 KOG4077 Cytochrome c oxidase, 43.2 1.7E+02 0.0037 24.5 7.3 41 570-610 71-111 (149)
388 PF14853 Fis1_TPR_C: Fis1 C-te 42.1 65 0.0014 22.1 4.3 30 118-149 6-35 (53)
389 cd00280 TRFH Telomeric Repeat 41.7 1.5E+02 0.0033 26.7 7.4 55 87-141 85-139 (200)
390 KOG0376 Serine-threonine phosp 41.3 30 0.00065 35.9 3.7 80 59-149 27-106 (476)
391 PF14561 TPR_20: Tetratricopep 41.3 1.7E+02 0.0037 22.8 8.2 58 214-271 15-73 (90)
392 PF11663 Toxin_YhaV: Toxin wit 41.3 24 0.00051 29.7 2.4 31 375-407 107-137 (140)
393 COG5108 RPO41 Mitochondrial DN 41.1 1.5E+02 0.0032 32.5 8.5 73 520-595 33-115 (1117)
394 KOG0376 Serine-threonine phosp 40.9 79 0.0017 33.0 6.5 97 168-268 17-117 (476)
395 PRK11619 lytic murein transgly 40.3 5.9E+02 0.013 28.8 39.7 447 123-620 43-513 (644)
396 KOG4077 Cytochrome c oxidase, 39.0 2.1E+02 0.0046 23.9 7.3 47 531-577 67-113 (149)
397 PF10475 DUF2450: Protein of u 38.8 2.6E+02 0.0057 27.7 9.9 53 226-284 103-155 (291)
398 COG5187 RPN7 26S proteasome re 38.7 3.9E+02 0.0084 26.1 15.5 66 363-428 115-185 (412)
399 KOG0686 COP9 signalosome, subu 38.6 4.7E+02 0.01 27.1 15.2 39 400-440 308-351 (466)
400 PF04910 Tcf25: Transcriptiona 38.6 4.6E+02 0.01 27.0 19.5 55 85-140 8-67 (360)
401 cd00280 TRFH Telomeric Repeat 37.7 2.3E+02 0.005 25.6 7.9 67 564-633 85-158 (200)
402 KOG2908 26S proteasome regulat 37.7 4.4E+02 0.0095 26.5 11.2 61 330-391 81-143 (380)
403 PHA02875 ankyrin repeat protei 37.7 5E+02 0.011 27.2 14.5 14 640-653 299-312 (413)
404 PF04190 DUF410: Protein of un 37.1 4E+02 0.0087 25.9 15.2 130 314-462 39-170 (260)
405 PF11817 Foie-gras_1: Foie gra 36.9 1.9E+02 0.0042 27.8 8.5 63 328-390 182-245 (247)
406 KOG4567 GTPase-activating prot 35.3 2.1E+02 0.0045 28.2 7.9 60 531-595 261-320 (370)
407 PF05476 PET122: PET122; Inte 35.2 4.1E+02 0.0089 25.4 9.9 57 593-649 53-111 (267)
408 COG2178 Predicted RNA-binding 35.0 3.5E+02 0.0076 24.7 8.7 62 121-187 37-101 (204)
409 PF09670 Cas_Cas02710: CRISPR- 34.6 5.5E+02 0.012 26.7 12.8 58 227-285 137-198 (379)
410 smart00463 SMR Small MutS-rela 34.3 23 0.0005 26.8 1.3 28 712-739 2-29 (80)
411 PRK10941 hypothetical protein; 33.9 1.9E+02 0.0041 28.2 7.8 62 73-142 183-244 (269)
412 KOG0292 Vesicle coat complex C 33.0 1.5E+02 0.0033 33.6 7.4 100 119-248 626-725 (1202)
413 PF03745 DUF309: Domain of unk 32.8 1.4E+02 0.0031 21.3 5.0 52 123-178 9-62 (62)
414 PF14669 Asp_Glu_race_2: Putat 32.6 3.9E+02 0.0084 24.4 15.1 59 223-281 134-206 (233)
415 cd08819 CARD_MDA5_2 Caspase ac 32.4 2.4E+02 0.0052 21.9 7.0 66 382-453 21-86 (88)
416 PF07163 Pex26: Pex26 protein; 32.4 4.9E+02 0.011 25.5 14.6 99 76-183 40-146 (309)
417 PF08424 NRDE-2: NRDE-2, neces 32.3 5.4E+02 0.012 25.9 17.0 109 59-181 8-128 (321)
418 PF09986 DUF2225: Uncharacteri 31.7 4.3E+02 0.0094 24.7 9.5 98 81-185 87-195 (214)
419 KOG0991 Replication factor C, 31.5 4.6E+02 0.0099 24.9 11.5 38 243-282 181-218 (333)
420 KOG2471 TPR repeat-containing 31.0 1.5E+02 0.0033 31.1 6.6 129 71-202 240-380 (696)
421 PF12862 Apc5: Anaphase-promot 31.0 2.6E+02 0.0056 21.9 7.5 20 371-390 49-68 (94)
422 smart00777 Mad3_BUB1_I Mad3/BU 30.6 71 0.0015 26.8 3.7 54 158-213 68-121 (125)
423 KOG4507 Uncharacterized conser 30.5 2.6E+02 0.0056 30.3 8.2 45 220-265 675-719 (886)
424 TIGR02710 CRISPR-associated pr 30.5 4.1E+02 0.0089 27.5 9.6 59 119-180 136-196 (380)
425 PF11846 DUF3366: Domain of un 30.3 2.7E+02 0.0059 25.4 8.0 30 361-390 142-171 (193)
426 KOG1308 Hsp70-interacting prot 29.9 46 0.001 33.0 2.8 85 168-254 127-215 (377)
427 PRK10564 maltose regulon perip 29.6 1E+02 0.0022 30.3 4.9 41 546-586 254-295 (303)
428 PF11663 Toxin_YhaV: Toxin wit 29.4 42 0.00091 28.2 2.1 33 80-112 104-136 (140)
429 PF12796 Ank_2: Ankyrin repeat 29.2 82 0.0018 24.1 3.8 80 558-655 4-86 (89)
430 KOG2422 Uncharacterized conser 28.6 8.1E+02 0.017 26.8 17.6 143 123-284 248-406 (665)
431 cd08819 CARD_MDA5_2 Caspase ac 28.2 2.9E+02 0.0062 21.5 6.4 61 174-236 21-81 (88)
432 PF10366 Vps39_1: Vacuolar sor 27.4 3.4E+02 0.0074 22.1 7.4 27 585-611 41-67 (108)
433 PF11817 Foie-gras_1: Foie gra 27.2 3.3E+02 0.0072 26.2 8.3 25 76-100 15-39 (247)
434 PF10516 SHNi-TPR: SHNi-TPR; 26.5 1.4E+02 0.003 18.9 3.6 29 72-100 2-30 (38)
435 PF10255 Paf67: RNA polymerase 26.3 3.4E+02 0.0073 28.3 8.3 69 72-140 76-149 (404)
436 TIGR01503 MthylAspMut_E methyl 26.3 8E+02 0.017 26.0 12.2 167 235-416 68-258 (480)
437 PF08311 Mad3_BUB1_I: Mad3/BUB 26.1 4E+02 0.0086 22.4 12.0 86 120-212 33-120 (126)
438 PF09477 Type_III_YscG: Bacter 25.0 3.8E+02 0.0082 21.8 8.8 16 410-425 81-96 (116)
439 PRK14958 DNA polymerase III su 24.8 9.3E+02 0.02 26.3 12.5 76 539-617 191-279 (509)
440 COG0735 Fur Fe2+/Zn2+ uptake r 24.4 3.1E+02 0.0066 23.8 6.7 65 384-449 7-71 (145)
441 PF10366 Vps39_1: Vacuolar sor 24.2 3.9E+02 0.0085 21.7 7.2 26 401-426 42-67 (108)
442 PF15297 CKAP2_C: Cytoskeleton 23.9 7.7E+02 0.017 25.0 10.2 64 564-629 119-186 (353)
443 TIGR01228 hutU urocanate hydra 23.8 5.6E+02 0.012 27.3 9.1 181 269-463 207-423 (545)
444 PF09454 Vps23_core: Vps23 cor 23.6 1.9E+02 0.004 21.0 4.3 49 581-630 6-54 (65)
445 PRK10304 ferritin; Provisional 23.6 5.3E+02 0.011 23.0 9.3 105 305-422 51-155 (165)
446 PRK08691 DNA polymerase III su 23.5 8.8E+02 0.019 27.6 11.3 75 540-617 192-279 (709)
447 PRK13342 recombination factor 23.2 8.9E+02 0.019 25.5 20.8 66 366-431 230-303 (413)
448 PF02607 B12-binding_2: B12 bi 22.8 1.7E+02 0.0036 21.9 4.3 35 596-630 14-48 (79)
449 PF12926 MOZART2: Mitotic-spin 22.6 3.7E+02 0.008 20.8 8.0 43 419-461 29-71 (88)
450 KOG4814 Uncharacterized conser 22.6 8.2E+02 0.018 27.1 10.2 94 119-216 360-453 (872)
451 PRK11639 zinc uptake transcrip 22.5 4.5E+02 0.0098 23.5 7.6 59 540-599 18-76 (169)
452 PF10255 Paf67: RNA polymerase 22.5 5.2E+02 0.011 27.0 8.8 27 222-248 165-191 (404)
453 PRK14951 DNA polymerase III su 22.5 1E+03 0.022 26.8 11.6 75 540-617 197-284 (618)
454 PF02847 MA3: MA3 domain; Int 22.4 2.6E+02 0.0057 22.6 5.8 22 553-574 7-28 (113)
455 KOG0551 Hsp90 co-chaperone CNS 22.3 5.8E+02 0.013 25.7 8.5 100 70-182 80-180 (390)
456 KOG2063 Vacuolar assembly/sort 22.2 1.3E+03 0.028 27.1 16.0 209 366-630 507-744 (877)
457 PRK12798 chemotaxis protein; R 22.1 9.2E+02 0.02 25.2 18.7 15 168-182 125-139 (421)
458 PF09454 Vps23_core: Vps23 cor 21.8 2.8E+02 0.006 20.1 4.9 50 360-410 5-54 (65)
459 COG2178 Predicted RNA-binding 21.5 6.4E+02 0.014 23.1 12.6 76 306-392 20-98 (204)
460 KOG4567 GTPase-activating prot 21.2 5.9E+02 0.013 25.3 8.2 71 383-458 263-343 (370)
461 PRK11639 zinc uptake transcrip 21.1 5.1E+02 0.011 23.2 7.6 38 596-633 38-75 (169)
462 smart00386 HAT HAT (Half-A-TPR 20.8 1.7E+02 0.0037 16.5 3.3 27 169-197 1-27 (33)
463 KOG1308 Hsp70-interacting prot 20.5 1.5E+02 0.0032 29.7 4.2 97 201-299 124-225 (377)
464 PF12926 MOZART2: Mitotic-spin 20.5 4.1E+02 0.0089 20.6 8.8 63 513-576 8-71 (88)
465 KOG4507 Uncharacterized conser 20.4 1E+03 0.022 26.1 10.3 101 336-444 619-721 (886)
466 KOG3824 Huntingtin interacting 20.2 2.2E+02 0.0048 27.9 5.2 68 71-148 116-183 (472)
467 cd02680 MIT_calpain7_2 MIT: do 20.1 1.8E+02 0.004 21.8 3.8 18 125-142 18-35 (75)
No 1
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=7.5e-67 Score=583.99 Aligned_cols=548 Identities=21% Similarity=0.354 Sum_probs=470.9
Q ss_pred hhhHHHHHHHHhhcCChHHHHHHHHHHHHhcCC-hhhHHhhhhHHHHHHHHHhhhhcCchhHHHHHHHHHHhcCCCcccc
Q 004480 71 NDYYADMASKLAKDGRLEEFAMIVESVVVSEGN-VSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLEL 149 (750)
Q Consensus 71 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~p~~~ 149 (750)
...|..++..+++.|++++|+++|+.|...+.. ++.. ....++..+.+.|..++|..+++.|.. |+..
T Consensus 370 ~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v-------~~~~li~~~~~~g~~~eAl~lf~~M~~----pd~~ 438 (1060)
T PLN03218 370 SPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKI-------YHAKFFKACKKQRAVKEAFRFAKLIRN----PTLS 438 (1060)
T ss_pred chHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHH-------HHHHHHHHHHHCCCHHHHHHHHHHcCC----CCHH
Confidence 556666667777777777777777777766542 2211 113344555667777777777766653 4443
Q ss_pred ccchhhhhhHHHHHHhhccCcHHHHHHHHHHHHhCCCCCcccccHHHHHHHHHcCCChHHHHHHhhhCCCCcchHHHHHH
Q 004480 150 FDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRADILFCNFVR 229 (750)
Q Consensus 150 ~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~l~~ 229 (750)
+|+.++.+|.. .|++++|.++|++|.+.|+.| +..+|+.+|.
T Consensus 439 ----Tyn~LL~a~~k---~g~~e~A~~lf~~M~~~Gl~p-------------------------------D~~tynsLI~ 480 (1060)
T PLN03218 439 ----TFNMLMSVCAS---SQDIDGALRVLRLVQEAGLKA-------------------------------DCKLYTTLIS 480 (1060)
T ss_pred ----HHHHHHHHHHh---CcCHHHHHHHHHHHHHcCCCC-------------------------------CHHHHHHHHH
Confidence 55666665544 677777777777777766544 3478999999
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCccHHHHHHHHHhhc--CChHH
Q 004480 230 EFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNA--HDLKF 307 (750)
Q Consensus 230 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~--~~~~~ 307 (750)
+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+++|.+++ |++++
T Consensus 481 ~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~de 560 (1060)
T PLN03218 481 TCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDR 560 (1060)
T ss_pred HHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999876 79999
Q ss_pred HHHHHHHHHH--cCCCCCHhhHHHHHHHHHHcCChHHHHHHHHHHHHhhhcCCCccCHHHHHHHHHHHHhccCHHHHHHH
Q 004480 308 TLEVYKNMQK--LGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKV 385 (750)
Q Consensus 308 a~~~~~~m~~--~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~g~~~~~~~~~~~li~~~~~~g~~~~a~~~ 385 (750)
|.++|++|.. .|+.||..+|+++|.+|++.|++++|.++|+.|.+ .| +.|+..+|+.+|.+|++.|++++|.++
T Consensus 561 A~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e---~g-i~p~~~tynsLI~ay~k~G~~deAl~l 636 (1060)
T PLN03218 561 AFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHE---YN-IKGTPEVYTIAVNSCSQKGDWDFALSI 636 (1060)
T ss_pred HHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHH---cC-CCCChHHHHHHHHHHHhcCCHHHHHHH
Confidence 9999999986 67899999999999999999999999999999987 45 789999999999999999999999999
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCChHHHHHHHHHHhhcccc
Q 004480 386 KEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQ 465 (750)
Q Consensus 386 ~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~ 465 (750)
|++|.+.|+.||..+|+.+|++|++.|++++|.++|++|.+.|+.||..+|+++|.+|++.|++++|.++|++|...+
T Consensus 637 f~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g-- 714 (1060)
T PLN03218 637 YDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIK-- 714 (1060)
T ss_pred HHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcC--
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999987554
Q ss_pred cccCCCCCCchhhhhhhhhhhcccccCCCCccCCCccccccccCCCCccHHHHHHHHHHHHh--cHHHHHHHHHHHHHcC
Q 004480 466 VALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCT--DYYRVKALMNEMRTVG 543 (750)
Q Consensus 466 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~--~~~~a~~l~~~m~~~~ 543 (750)
+.||..+||++|.+|++ +.++|.++|++|...|
T Consensus 715 ---------------------------------------------~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~G 749 (1060)
T PLN03218 715 ---------------------------------------------LRPTVSTMNALITALCEGNQLPKALEVLSEMKRLG 749 (1060)
T ss_pred ---------------------------------------------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC
Confidence 58999999999999986 6899999999999999
Q ss_pred CCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH----c-------------------CCHH
Q 004480 544 LSPNHISWTILIDACGGSGNVEGALQILKIMREDGMSPDVVAYTTAIKVCVR----S-------------------KRLK 600 (750)
Q Consensus 544 ~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~----~-------------------g~~~ 600 (750)
+.||..||+++|.+|++.|++++|.++|++|.+.|+.||..+|++++..|.+ . +..+
T Consensus 750 i~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~ 829 (1060)
T PLN03218 750 LCPNTITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTS 829 (1060)
T ss_pred CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHH
Confidence 9999999999999999999999999999999999999999999999976432 1 2346
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhhhhhhhhccccc
Q 004480 601 QAFSLFEEMKHYQIQPNLVTYITLLRARSRYGSLHEVQQCLAVYQDMWKAGYKANDTYLKELIEEWCEGVIQDKNQNQGE 680 (750)
Q Consensus 601 ~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~~~~~~~ 680 (750)
+|..+|++|.+.|+.||..||+.++.++++.+..+. +..++++|...+..|+..+|++||+++++-
T Consensus 830 ~Al~lf~eM~~~Gi~Pd~~T~~~vL~cl~~~~~~~~---~~~m~~~m~~~~~~~~~~~y~~Li~g~~~~----------- 895 (1060)
T PLN03218 830 WALMVYRETISAGTLPTMEVLSQVLGCLQLPHDATL---RNRLIENLGISADSQKQSNLSTLVDGFGEY----------- 895 (1060)
T ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHhcccccHHH---HHHHHHHhccCCCCcchhhhHHHHHhhccC-----------
Confidence 899999999999999999999999988777777555 566888888889999999999999987531
Q ss_pred chhhhcccCCCchhHHHHHHHHHHhhhh---hhhhhhhhccccchhhHHHHHHHHhhhhcccc
Q 004480 681 VTLCRRTNSQRPQSLLLEKVAVHLQKSA---AENLAIDLRGLTKVEARIIVLAVLRMMKENYS 740 (750)
Q Consensus 681 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~i~l~~l~~~~~~~~~~~~~~~~~~~~~ 740 (750)
..++..++.++...++.++. ...|.+|++.|+.+.+...++-|++-++++..
T Consensus 896 --------~~~A~~l~~em~~~Gi~p~~~~~~~~~~~d~~~~~~~aa~~~l~~wl~~~~~~~~ 950 (1060)
T PLN03218 896 --------DPRAFSLLEEAASLGVVPSVSFKKSPIVIDAEELPVFAAEVYLLTILKGLKHRLA 950 (1060)
T ss_pred --------hHHHHHHHHHHHHcCCCCCcccccCceEEEcccCcchhHHHHHHHHHHHHHHHHh
Confidence 13577888888888887777 34799999999988777777778888876643
No 2
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=3.2e-67 Score=601.34 Aligned_cols=624 Identities=17% Similarity=0.175 Sum_probs=519.2
Q ss_pred hhhhHHHHHHHHhhcCChHHHHHHHHHHHHhcCChhhHHhhhh----------------------------HHHHHHHHH
Q 004480 70 RNDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLS----------------------------LEMVASGIV 121 (750)
Q Consensus 70 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~----------------------------~~~~~~~~~ 121 (750)
+...++.++..+++.|++++|+.+|+.|...|..|+..+.... ....+.++.
T Consensus 50 ~~~~~n~~i~~l~~~g~~~~A~~l~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~n~li~ 129 (857)
T PLN03077 50 STHDSNSQLRALCSHGQLEQALKLLESMQELRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHPSLGVRLGNAMLS 129 (857)
T ss_pred chhhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhhCCCHHHHHHHHHHHHHcCCCCCchHHHHHHH
Confidence 4677888888999999999999999988887765554432111 123366788
Q ss_pred hhhhcCchhHHHHHHHHHHhcCCCccccccchhhhhhHHHHHHhhccCcHHHHHHHHHHHHhCCCCCcccccHHHHHHHH
Q 004480 122 KSIREGRIDCVVGVLKKLNELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLC 201 (750)
Q Consensus 122 ~~~~~g~~~~A~~~l~~~~~~~~~p~~~~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~ 201 (750)
.|++.|+.+.|.++|++|.+ ||.. +++.++.++.. .|++++|+++|++|...|+.|+ ..++..++++|
T Consensus 130 ~~~~~g~~~~A~~~f~~m~~----~d~~----~~n~li~~~~~---~g~~~~A~~~f~~M~~~g~~Pd-~~t~~~ll~~~ 197 (857)
T PLN03077 130 MFVRFGELVHAWYVFGKMPE----RDLF----SWNVLVGGYAK---AGYFDEALCLYHRMLWAGVRPD-VYTFPCVLRTC 197 (857)
T ss_pred HHHhCCChHHHHHHHhcCCC----CCee----EHHHHHHHHHh---CCCHHHHHHHHHHHHHcCCCCC-hhHHHHHHHHh
Confidence 88999999999999999874 4444 67777775544 8999999999999999888774 46688899999
Q ss_pred HcCCChHHHHHHhhhC-----CCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 004480 202 VNKPDVNLAIRYACIV-----PRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSR 276 (750)
Q Consensus 202 ~~~~~~~~A~~~~~~~-----~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 276 (750)
...+++..+.+++..+ .++..++++|+.+|++.|++++|.++|++|.+ ||..+||++|.+|++.|++++|+
T Consensus 198 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~----~d~~s~n~li~~~~~~g~~~eAl 273 (857)
T PLN03077 198 GGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPR----RDCISWNAMISGYFENGECLEGL 273 (857)
T ss_pred CCccchhhHHHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCCC----CCcchhHHHHHHHHhCCCHHHHH
Confidence 9999999998887664 55778999999999999999999999999965 89999999999999999999999
Q ss_pred HHHHHHHhCCCCccHHHHHHHHHhhc--CChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHHcCChHHHHHHHHHHHHhh
Q 004480 277 AIYEDLRSQNVTLNIYVFNSLMNVNA--HDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLE 354 (750)
Q Consensus 277 ~~~~~m~~~g~~~~~~~~~~ll~~~~--~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~ 354 (750)
++|++|.+.|+.||..||++++.+++ ++.+.+.+++..|.+.|+.||..+||.|+.+|++.|++++|.++|++|.
T Consensus 274 ~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~--- 350 (857)
T PLN03077 274 ELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRME--- 350 (857)
T ss_pred HHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCC---
Confidence 99999999999999999999999866 7999999999999999999999999999999999999999999999985
Q ss_pred hcCCCccCHHHHHHHHHHHHhccCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH
Q 004480 355 AKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQ 434 (750)
Q Consensus 355 ~~g~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~ 434 (750)
.||..+|+++|.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|++++|.++++.|.+.|+.|+..
T Consensus 351 -----~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~ 425 (857)
T PLN03077 351 -----TKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVV 425 (857)
T ss_pred -----CCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchH
Confidence 479999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhCChHHHHHHHHHHhhcccccccCCCCCCchhhhhhhhhhhcccccCCCCccCCCccccccccCCCCcc
Q 004480 435 CCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPT 514 (750)
Q Consensus 435 ~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 514 (750)
+|++|+++|++.|++++|.++|++|...+.. .++..+..+...... .....++..|. .+++||
T Consensus 426 ~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~v-----s~~~mi~~~~~~g~~-----------~eA~~lf~~m~-~~~~pd 488 (857)
T PLN03077 426 VANALIEMYSKCKCIDKALEVFHNIPEKDVI-----SWTSIIAGLRLNNRC-----------FEALIFFRQML-LTLKPN 488 (857)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHhCCCCCee-----eHHHHHHHHHHCCCH-----------HHHHHHHHHHH-hCCCCC
Confidence 9999999999999999999999998764321 111111111000000 00011112232 247999
Q ss_pred HHHHHHHHHHHHh--cHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 004480 515 TTTYNILMKACCT--DYYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQILKIMREDGMSPDVVAYTTAIKV 592 (750)
Q Consensus 515 ~~~~~~li~~~~~--~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~ 592 (750)
..||+++|.+|++ +.+.+.+++..|.+.|+.+|..++|+||++|+++|++++|.++|++| .||..+||++|.+
T Consensus 489 ~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~-----~~d~~s~n~lI~~ 563 (857)
T PLN03077 489 SVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH-----EKDVVSWNILLTG 563 (857)
T ss_pred HhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc-----CCChhhHHHHHHH
Confidence 9999999999986 68999999999999999999999999999999999999999999987 6899999999999
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH-HcCCCCCHHHHHHHHHHHHh-hh
Q 004480 593 CVRSKRLKQAFSLFEEMKHYQIQPNLVTYITLLRARSRYGSLHEVQQCLAVYQDMW-KAGYKANDTYLKELIEEWCE-GV 670 (750)
Q Consensus 593 ~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~~~~a~~~~~~m~-~~g~~p~~~~~~~li~~~~~-~~ 670 (750)
|++.|+.++|.++|++|.+.|+.||..||+.+|.+|++.|.+++ |+++|++|. +.|+.|+..+|+.+++.|++ |.
T Consensus 564 ~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~e---a~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~ 640 (857)
T PLN03077 564 YVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQ---GLEYFHSMEEKYSITPNLKHYACVVDLLGRAGK 640 (857)
T ss_pred HHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHH---HHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCC
Confidence 99999999999999999999999999999999999999999776 788999999 68999999999999999999 88
Q ss_pred hhhhhcccccchhhhcccCCCchhHHHHHH------------HH---HHhhhhhhhhhhhhccccchhhHHHHHHHHhhh
Q 004480 671 IQDKNQNQGEVTLCRRTNSQRPQSLLLEKV------------AV---HLQKSAAENLAIDLRGLTKVEARIIVLAVLRMM 735 (750)
Q Consensus 671 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~---~~~~~~~~~~~i~l~~l~~~~~~~~~~~~~~~~ 735 (750)
++++.+..+++.. ......|..++... ++ .+.+.....+.....-++..|....+..+.+.|
T Consensus 641 ~~eA~~~~~~m~~---~pd~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~p~~~~~y~ll~n~ya~~g~~~~a~~vr~~M 717 (857)
T PLN03077 641 LTEAYNFINKMPI---TPDPAVWGALLNACRIHRHVELGELAAQHIFELDPNSVGYYILLCNLYADAGKWDEVARVRKTM 717 (857)
T ss_pred HHHHHHHHHHCCC---CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHCCChHHHHHHHHHH
Confidence 8888877665421 11112233332221 11 223333333333334456778888999999999
Q ss_pred hcccccCccc
Q 004480 736 KENYSLGTDE 745 (750)
Q Consensus 736 ~~~~~~~~~~ 745 (750)
+++...+...
T Consensus 718 ~~~g~~k~~g 727 (857)
T PLN03077 718 RENGLTVDPG 727 (857)
T ss_pred HHcCCCCCCC
Confidence 9997776554
No 3
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=4.6e-65 Score=569.68 Aligned_cols=515 Identities=20% Similarity=0.294 Sum_probs=457.4
Q ss_pred HHHHHhhccCcHHHHHHHHHHHHhCCCCCcccccHHHHHHHHHcCCChHHHHHHhhhCCC-CcchHHHHHHHHHhcCCHH
Q 004480 160 NECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPR-ADILFCNFVREFGKKRDLV 238 (750)
Q Consensus 160 ~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-~~~~~~~l~~~~~~~g~~~ 238 (750)
..+..+.+.|++++|+++|++|...++.+.+...+..++..|.+.|.+++|..+|..++. +..+|+.++.+|++.|+++
T Consensus 375 ~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~pd~~Tyn~LL~a~~k~g~~e 454 (1060)
T PLN03218 375 DAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRNPTLSTFNMLMSVCASSQDID 454 (1060)
T ss_pred HHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHhCcCHH
Confidence 333445558999999999999999998777777888899999999999999999998864 4588999999999999999
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCccHHHHHHHHHhhc--CChHHHHHHHHHHH
Q 004480 239 SALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNA--HDLKFTLEVYKNMQ 316 (750)
Q Consensus 239 ~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~--~~~~~a~~~~~~m~ 316 (750)
+|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+++|.+++ |++++|.++|++|.
T Consensus 455 ~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~ 534 (1060)
T PLN03218 455 GALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMR 534 (1060)
T ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999876 79999999999999
Q ss_pred HcCCCCCHhhHHHHHHHHHHcCChHHHHHHHHHHHHhhhcCCCccCHHHHHHHHHHHHhccCHHHHHHHHHHHHHCCCCC
Q 004480 317 KLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTP 396 (750)
Q Consensus 317 ~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~g~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p 396 (750)
+.|+.||..+|+.||.+|++.|++++|.++|++|... ..| +.||..+|+++|.+|++.|++++|.++|++|.+.|+.|
T Consensus 535 ~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~-~~g-i~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p 612 (1060)
T PLN03218 535 SKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAE-THP-IDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKG 612 (1060)
T ss_pred HcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-cCC-CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCC
Confidence 9999999999999999999999999999999999752 123 78999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCChHHHHHHHHHHhhcccccccCCCCCCch
Q 004480 397 NTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNT 476 (750)
Q Consensus 397 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 476 (750)
+..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|++++++|++.|++++|.++|+.|.+.+
T Consensus 613 ~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G------------- 679 (1060)
T PLN03218 613 TPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQG------------- 679 (1060)
T ss_pred ChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcC-------------
Confidence 9999999999999999999999999999999999999999999999999999999999999987654
Q ss_pred hhhhhhhhhhcccccCCCCccCCCccccccccCCCCccHHHHHHHHHHHHh--cHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 004480 477 DRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCT--DYYRVKALMNEMRTVGLSPNHISWTIL 554 (750)
Q Consensus 477 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~--~~~~a~~l~~~m~~~~~~p~~~~~~~l 554 (750)
+.||..+|+++|.+|++ +.++|.++|++|.+.|+.||..+||+|
T Consensus 680 ----------------------------------~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~L 725 (1060)
T PLN03218 680 ----------------------------------IKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNAL 725 (1060)
T ss_pred ----------------------------------CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 58999999999999986 689999999999999999999999999
Q ss_pred HHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----
Q 004480 555 IDACGGSGNVEGALQILKIMREDGMSPDVVAYTTAIKVCVRSKRLKQAFSLFEEMKHYQIQPNLVTYITLLRARSR---- 630 (750)
Q Consensus 555 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~---- 630 (750)
|.+|++.|++++|.++|++|.+.|+.||..||+++|.+|++.|++++|.++|++|.+.|+.||..+|++++..|.+
T Consensus 726 I~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~~y~k 805 (1060)
T PLN03218 726 ITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLRRFEK 805 (1060)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999976542
Q ss_pred cCCHH----------------HHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh-hhhhhhhcccccchhhhcccCCCch
Q 004480 631 YGSLH----------------EVQQCLAVYQDMWKAGYKANDTYLKELIEEWCE-GVIQDKNQNQGEVTLCRRTNSQRPQ 693 (750)
Q Consensus 631 ~g~~~----------------~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 693 (750)
++... -...|+.+|++|.+.|+.||..||+.+|.++++ +....+.
T Consensus 806 a~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~eM~~~Gi~Pd~~T~~~vL~cl~~~~~~~~~~------------------ 867 (1060)
T PLN03218 806 ACALGEPVVSFDSGRPQIENKWTSWALMVYRETISAGTLPTMEVLSQVLGCLQLPHDATLRN------------------ 867 (1060)
T ss_pred HhhhhhhhhhhhccccccccchHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccccHHHHH------------------
Confidence 11110 124589999999999999999999999977654 2221111
Q ss_pred hHHHHHHHHHHhhhhhhhhhhhhccccchhhHHHHHHHHhhhhcccccCcc
Q 004480 694 SLLLEKVAVHLQKSAAENLAIDLRGLTKVEARIIVLAVLRMMKENYSLGTD 744 (750)
Q Consensus 694 ~~~~~~~~~~~~~~~~~~~~i~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 744 (750)
.+ .+.+......+....+...|+|+++. ...++.+++.|.+.+..|.-
T Consensus 868 ~m-~~~m~~~~~~~~~~~y~~Li~g~~~~--~~~A~~l~~em~~~Gi~p~~ 915 (1060)
T PLN03218 868 RL-IENLGISADSQKQSNLSTLVDGFGEY--DPRAFSLLEEAASLGVVPSV 915 (1060)
T ss_pred HH-HHHhccCCCCcchhhhHHHHHhhccC--hHHHHHHHHHHHHcCCCCCc
Confidence 11 12122222333345566777787653 35689999999999887754
No 4
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=1.8e-63 Score=570.46 Aligned_cols=549 Identities=16% Similarity=0.204 Sum_probs=479.4
Q ss_pred hhhHHHHHHHHhhcCChHHHHHHHHHHHHhcCChhhHHhhhhHHHHHHHHHhhhhcCchhHHHHHHHHHHhcCCCccccc
Q 004480 71 NDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLELF 150 (750)
Q Consensus 71 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~p~~~~ 150 (750)
...++.++..|.+.|++++|..+|++|... + ...++.++..|++.|++++|+++|++|.+.|+.||..
T Consensus 121 ~~~~n~li~~~~~~g~~~~A~~~f~~m~~~----d-------~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~- 188 (857)
T PLN03077 121 VRLGNAMLSMFVRFGELVHAWYVFGKMPER----D-------LFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVY- 188 (857)
T ss_pred chHHHHHHHHHHhCCChHHHHHHHhcCCCC----C-------eeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChh-
Confidence 345566677777777777777777777532 2 2234678888999999999999999999999999887
Q ss_pred cchhhhhhHHHHHHhhccCcHHHHHHHHHHHHhCCCCCcccccHHHHHHHHHcCCChHHHHHHhhhCCC-CcchHHHHHH
Q 004480 151 DGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPR-ADILFCNFVR 229 (750)
Q Consensus 151 ~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-~~~~~~~l~~ 229 (750)
+++.++++|.. .+++..+.+++..+...|+.| +...++.++..|++.|++++|.++|+.++. +..+|+++|.
T Consensus 189 ---t~~~ll~~~~~---~~~~~~~~~~~~~~~~~g~~~-~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~~d~~s~n~li~ 261 (857)
T PLN03077 189 ---TFPCVLRTCGG---IPDLARGREVHAHVVRFGFEL-DVDVVNALITMYVKCGDVVSARLVFDRMPRRDCISWNAMIS 261 (857)
T ss_pred ---HHHHHHHHhCC---ccchhhHHHHHHHHHHcCCCc-ccchHhHHHHHHhcCCCHHHHHHHHhcCCCCCcchhHHHHH
Confidence 67778887765 788999999999999999876 556789999999999999999999999865 5689999999
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCccHHHHHHHHHhhc--CChHH
Q 004480 230 EFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNA--HDLKF 307 (750)
Q Consensus 230 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~--~~~~~ 307 (750)
+|++.|++++|+++|++|.+.|+.||..+|+.++.+|++.|+++.|.+++..|.+.|+.||..+|++++.+++ |++++
T Consensus 262 ~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~ 341 (857)
T PLN03077 262 GYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGE 341 (857)
T ss_pred HHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999876 79999
Q ss_pred HHHHHHHHHHcCCCCCHhhHHHHHHHHHHcCChHHHHHHHHHHHHhhhcCCCccCHHHHHHHHHHHHhccCHHHHHHHHH
Q 004480 308 TLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKE 387 (750)
Q Consensus 308 a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~g~~~~~~~~~~~li~~~~~~g~~~~a~~~~~ 387 (750)
|.++|++|. .||..+||.+|.+|++.|++++|.++|++|.+ .| +.||..+|+.++.+|++.|++++|.++++
T Consensus 342 A~~vf~~m~----~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~---~g-~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~ 413 (857)
T PLN03077 342 AEKVFSRME----TKDAVSWTAMISGYEKNGLPDKALETYALMEQ---DN-VSPDEITIASVLSACACLGDLDVGVKLHE 413 (857)
T ss_pred HHHHHhhCC----CCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHH---hC-CCCCceeHHHHHHHHhccchHHHHHHHHH
Confidence 999999996 58999999999999999999999999999986 55 89999999999999999999999999999
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCChHHHHHHHHHHhhcccccc
Q 004480 388 DMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVA 467 (750)
Q Consensus 388 ~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~ 467 (750)
.|.+.|+.|+..+|+.||++|++.|++++|.++|++|. .+|..+|++++.+|++.|+.++|..+|++|... ..++
T Consensus 414 ~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~----~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~~-~~pd 488 (857)
T PLN03077 414 LAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIP----EKDVISWTSIIAGLRLNNRCFEALIFFRQMLLT-LKPN 488 (857)
T ss_pred HHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCC----CCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHhC-CCCC
Confidence 99999999999999999999999999999999999996 578899999999999999999999999999753 2221
Q ss_pred cCCCCCCchhhhhhhhhhhcccccCCCCccCCCccccccccCCCCccHHHHHHHHHHHHh--cHHHHHHHHHHHHHcCCC
Q 004480 468 LGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCT--DYYRVKALMNEMRTVGLS 545 (750)
Q Consensus 468 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~--~~~~a~~l~~~m~~~~~~ 545 (750)
. .++......+.. ....-....+...+.+.|+.+|..++|++|.+|++ +.++|.++|+.| .
T Consensus 489 ~-~t~~~lL~a~~~-----------~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~-----~ 551 (857)
T PLN03077 489 S-VTLIAALSACAR-----------IGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH-----E 551 (857)
T ss_pred H-hHHHHHHHHHhh-----------hchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc-----C
Confidence 1 111111110000 00001112334456778899999999999999985 789999999987 5
Q ss_pred CCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-HCCCCCCHHHHHHH
Q 004480 546 PNHISWTILIDACGGSGNVEGALQILKIMREDGMSPDVVAYTTAIKVCVRSKRLKQAFSLFEEMK-HYQIQPNLVTYITL 624 (750)
Q Consensus 546 p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~g~~p~~~t~~~l 624 (750)
||..+||+||.+|++.|+.++|.++|++|.+.|+.||..||+.+|.+|++.|++++|.++|+.|. +.|+.|+..+|+++
T Consensus 552 ~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~l 631 (857)
T PLN03077 552 KDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACV 631 (857)
T ss_pred CChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999999999 78999999999999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh-hhhhhh
Q 004480 625 LRARSRYGSLHEVQQCLAVYQDMWKAGYKANDTYLKELIEEWCE-GVIQDK 674 (750)
Q Consensus 625 i~~~~~~g~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~-~~~~~~ 674 (750)
+++|++.|++++ |.+++++| .++||..+|++|+.+|.. +..+.+
T Consensus 632 v~~l~r~G~~~e---A~~~~~~m---~~~pd~~~~~aLl~ac~~~~~~e~~ 676 (857)
T PLN03077 632 VDLLGRAGKLTE---AYNFINKM---PITPDPAVWGALLNACRIHRHVELG 676 (857)
T ss_pred HHHHHhCCCHHH---HHHHHHHC---CCCCCHHHHHHHHHHHHHcCChHHH
Confidence 999999999887 56688888 589999999999999865 444433
No 5
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=9.7e-60 Score=526.60 Aligned_cols=454 Identities=17% Similarity=0.231 Sum_probs=401.8
Q ss_pred HHHHHhhhhcCchhHHHHHHHHHHhcC-CCccccccchhhhhhHHHHHHhhccCcHHHHHHHHHHHHhCCCCCcccccHH
Q 004480 117 ASGIVKSIREGRIDCVVGVLKKLNELG-VAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEF 195 (750)
Q Consensus 117 ~~~~~~~~~~g~~~~A~~~l~~~~~~~-~~p~~~~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 195 (750)
+.++..+.+.|++++|+++|++|...+ ..||.. +++.++.+|.. .++.+.|.+++..|...|+.|+
T Consensus 91 ~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~----t~~~ll~a~~~---~~~~~~a~~l~~~m~~~g~~~~------ 157 (697)
T PLN03081 91 CSQIEKLVACGRHREALELFEILEAGCPFTLPAS----TYDALVEACIA---LKSIRCVKAVYWHVESSGFEPD------ 157 (697)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHH----HHHHHHHHHHh---CCCHHHHHHHHHHHHHhCCCcc------
Confidence 566777889999999999999998754 566654 67777877666 7899999999999998886653
Q ss_pred HHHHHHHcCCChHHHHHHhhhCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 004480 196 RIVQLCVNKPDVNLAIRYACIVPRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKS 275 (750)
Q Consensus 196 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 275 (750)
..+|+.++.+|++.|++++|.++|++|.+ ||..+||+++.+|++.|++++|
T Consensus 158 -------------------------~~~~n~Li~~y~k~g~~~~A~~lf~~m~~----~~~~t~n~li~~~~~~g~~~~A 208 (697)
T PLN03081 158 -------------------------QYMMNRVLLMHVKCGMLIDARRLFDEMPE----RNLASWGTIIGGLVDAGNYREA 208 (697)
T ss_pred -------------------------hHHHHHHHHHHhcCCCHHHHHHHHhcCCC----CCeeeHHHHHHHHHHCcCHHHH
Confidence 36788999999999999999999999865 8999999999999999999999
Q ss_pred HHHHHHHHhCCCCccHHHHHHHHHhhc--CChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHHcCChHHHHHHHHHHHHh
Q 004480 276 RAIYEDLRSQNVTLNIYVFNSLMNVNA--HDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHL 353 (750)
Q Consensus 276 ~~~~~~m~~~g~~~~~~~~~~ll~~~~--~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~ 353 (750)
+++|++|.+.|+.||..+|+.++.+++ +..+.+.+++..+.+.|+.||..+|+.|+++|++.|++++|.++|+.|.
T Consensus 209 ~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~-- 286 (697)
T PLN03081 209 FALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMP-- 286 (697)
T ss_pred HHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCC--
Confidence 999999999999999999999999876 5888899999999999999999999999999999999999999999885
Q ss_pred hhcCCCccCHHHHHHHHHHHHhccCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH
Q 004480 354 EAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNS 433 (750)
Q Consensus 354 ~~~g~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~ 433 (750)
.+|..+||+||.+|++.|++++|.++|++|.+.|+.||..||+.++.+|++.|++++|.+++.+|.+.|+.||.
T Consensus 287 ------~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~ 360 (697)
T PLN03081 287 ------EKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDI 360 (697)
T ss_pred ------CCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCe
Confidence 37899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHhhcccccccCCCCCCchhhhhhhhhhhcccccCCCCccCCCccccccccCCCCc
Q 004480 434 QCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKP 513 (750)
Q Consensus 434 ~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 513 (750)
.+|++|+++|++.|++++|.++|++|. .|
T Consensus 361 ~~~~~Li~~y~k~G~~~~A~~vf~~m~---------------------------------------------------~~ 389 (697)
T PLN03081 361 VANTALVDLYSKWGRMEDARNVFDRMP---------------------------------------------------RK 389 (697)
T ss_pred eehHHHHHHHHHCCCHHHHHHHHHhCC---------------------------------------------------CC
Confidence 999999999999999999999999875 67
Q ss_pred cHHHHHHHHHHHHh--cHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHH-CCCCCCHHHHHHHH
Q 004480 514 TTTTYNILMKACCT--DYYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQILKIMRE-DGMSPDVVAYTTAI 590 (750)
Q Consensus 514 ~~~~~~~li~~~~~--~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-~g~~p~~~~~~~li 590 (750)
|..+||++|.+|++ +.++|.++|++|.+.|+.||..||++++.+|++.|++++|.++|+.|.+ .|+.|+..+|+++|
T Consensus 390 d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li 469 (697)
T PLN03081 390 NLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMI 469 (697)
T ss_pred CeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHH
Confidence 88999999999986 6789999999999999999999999999999999999999999999976 59999999999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHh-
Q 004480 591 KVCVRSKRLKQAFSLFEEMKHYQIQPNLVTYITLLRARSRYGSLHEVQQCLAVYQDMWKAGYKAN-DTYLKELIEEWCE- 668 (750)
Q Consensus 591 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~- 668 (750)
++|++.|++++|.+++++| ++.||..+|++|+.+|+..|+++.+++ ++++|. ++.|+ ..+|..|+..|++
T Consensus 470 ~~l~r~G~~~eA~~~~~~~---~~~p~~~~~~~Ll~a~~~~g~~~~a~~---~~~~l~--~~~p~~~~~y~~L~~~y~~~ 541 (697)
T PLN03081 470 ELLGREGLLDEAYAMIRRA---PFKPTVNMWAALLTACRIHKNLELGRL---AAEKLY--GMGPEKLNNYVVLLNLYNSS 541 (697)
T ss_pred HHHHhcCCHHHHHHHHHHC---CCCCCHHHHHHHHHHHHHcCCcHHHHH---HHHHHh--CCCCCCCcchHHHHHHHHhC
Confidence 9999999999999998876 588999999999999999999887554 555664 44554 5689999999987
Q ss_pred hhhhhhhcccc
Q 004480 669 GVIQDKNQNQG 679 (750)
Q Consensus 669 ~~~~~~~~~~~ 679 (750)
|.++++.+..+
T Consensus 542 G~~~~A~~v~~ 552 (697)
T PLN03081 542 GRQAEAAKVVE 552 (697)
T ss_pred CCHHHHHHHHH
Confidence 77777665433
No 6
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=2.5e-57 Score=507.27 Aligned_cols=468 Identities=16% Similarity=0.226 Sum_probs=426.5
Q ss_pred hhhHHHHHHHHhhcCChHHHHHHHHHHHHhc-CChhhHHhhhhHHHHHHHHHhhhhcCchhHHHHHHHHHHhcCCCcccc
Q 004480 71 NDYYADMASKLAKDGRLEEFAMIVESVVVSE-GNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLEL 149 (750)
Q Consensus 71 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~p~~~ 149 (750)
...+..++..+.+.|++++|+.+|+.|...+ ..|+ ..+++.++.++.+.++++.|.+++..|.+.|+.||..
T Consensus 87 ~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~-------~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~ 159 (697)
T PLN03081 87 GVSLCSQIEKLVACGRHREALELFEILEAGCPFTLP-------ASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQY 159 (697)
T ss_pred ceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCC-------HHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchH
Confidence 4578999999999999999999999998764 3455 3345677888899999999999999999999999876
Q ss_pred ccchhhhhhHHHHHHhhccCcHHHHHHHHHHHHhCCCCCcccccHHHHHHHHHcCCChHHHHHHhhhCCCCcchHHHHHH
Q 004480 150 FDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRADILFCNFVR 229 (750)
Q Consensus 150 ~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~l~~ 229 (750)
+++.++..+ .+.|++++|.++|++|.. | +..+|++++.
T Consensus 160 ----~~n~Li~~y---~k~g~~~~A~~lf~~m~~----~-------------------------------~~~t~n~li~ 197 (697)
T PLN03081 160 ----MMNRVLLMH---VKCGMLIDARRLFDEMPE----R-------------------------------NLASWGTIIG 197 (697)
T ss_pred ----HHHHHHHHH---hcCCCHHHHHHHHhcCCC----C-------------------------------CeeeHHHHHH
Confidence 556666543 348999999999988753 1 2478999999
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCccHHHHHHHHHhhc--CChHH
Q 004480 230 EFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNA--HDLKF 307 (750)
Q Consensus 230 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~--~~~~~ 307 (750)
+|++.|++++|+++|++|.+.|+.|+..+|+.++.+|++.|+.+.+.+++..+.+.|+.||..+|++++.+++ |++++
T Consensus 198 ~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~ 277 (697)
T PLN03081 198 GLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIED 277 (697)
T ss_pred HHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999876 79999
Q ss_pred HHHHHHHHHHcCCCCCHhhHHHHHHHHHHcCChHHHHHHHHHHHHhhhcCCCccCHHHHHHHHHHHHhccCHHHHHHHHH
Q 004480 308 TLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKE 387 (750)
Q Consensus 308 a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~g~~~~~~~~~~~li~~~~~~g~~~~a~~~~~ 387 (750)
|.++|++|. .+|..+||.+|.+|++.|++++|.++|++|.+ .| +.||..||+.++.+|++.|++++|.+++.
T Consensus 278 A~~vf~~m~----~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~---~g-~~pd~~t~~~ll~a~~~~g~~~~a~~i~~ 349 (697)
T PLN03081 278 ARCVFDGMP----EKTTVAWNSMLAGYALHGYSEEALCLYYEMRD---SG-VSIDQFTFSIMIRIFSRLALLEHAKQAHA 349 (697)
T ss_pred HHHHHHhCC----CCChhHHHHHHHHHHhCCCHHHHHHHHHHHHH---cC-CCCCHHHHHHHHHHHHhccchHHHHHHHH
Confidence 999999996 47999999999999999999999999999986 55 89999999999999999999999999999
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCChHHHHHHHHHHhhcccccc
Q 004480 388 DMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVA 467 (750)
Q Consensus 388 ~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~ 467 (750)
.|.+.|+.||..+|++||++|++.|++++|.++|++|. .||..+||+||.+|++.|+.++|.++|++|...+
T Consensus 350 ~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~----~~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g---- 421 (697)
T PLN03081 350 GLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMP----RKNLISWNALIAGYGNHGRGTKAVEMFERMIAEG---- 421 (697)
T ss_pred HHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCC----CCCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhC----
Confidence 99999999999999999999999999999999999995 5899999999999999999999999999988654
Q ss_pred cCCCCCCchhhhhhhhhhhcccccCCCCccCCCccccccccCCCCccHHHHHHHHHHHHh--cHHHHHHHHHHHHH-cCC
Q 004480 468 LGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCT--DYYRVKALMNEMRT-VGL 544 (750)
Q Consensus 468 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~--~~~~a~~l~~~m~~-~~~ 544 (750)
+.||..||+++|.+|++ ..++|.++|+.|.+ .|+
T Consensus 422 -------------------------------------------~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~ 458 (697)
T PLN03081 422 -------------------------------------------VAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRI 458 (697)
T ss_pred -------------------------------------------CCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCC
Confidence 58999999999999985 68999999999986 699
Q ss_pred CCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HHHHHH
Q 004480 545 SPNHISWTILIDACGGSGNVEGALQILKIMREDGMSPDVVAYTTAIKVCVRSKRLKQAFSLFEEMKHYQIQPN-LVTYIT 623 (750)
Q Consensus 545 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ 623 (750)
.|+..+|+.++++|++.|++++|.+++++| ++.||..+|++|+.+|+..|+++.|..+++++.+ +.|+ ..+|..
T Consensus 459 ~p~~~~y~~li~~l~r~G~~~eA~~~~~~~---~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~--~~p~~~~~y~~ 533 (697)
T PLN03081 459 KPRAMHYACMIELLGREGLLDEAYAMIRRA---PFKPTVNMWAALLTACRIHKNLELGRLAAEKLYG--MGPEKLNNYVV 533 (697)
T ss_pred CCCccchHhHHHHHHhcCCHHHHHHHHHHC---CCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhC--CCCCCCcchHH
Confidence 999999999999999999999999998876 5799999999999999999999999999999974 5674 789999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHHcCCCC
Q 004480 624 LLRARSRYGSLHEVQQCLAVYQDMWKAGYKA 654 (750)
Q Consensus 624 li~~~~~~g~~~~~~~a~~~~~~m~~~g~~p 654 (750)
|+..|++.|++++ |.+++++|.+.|++.
T Consensus 534 L~~~y~~~G~~~~---A~~v~~~m~~~g~~k 561 (697)
T PLN03081 534 LLNLYNSSGRQAE---AAKVVETLKRKGLSM 561 (697)
T ss_pred HHHHHHhCCCHHH---HHHHHHHHHHcCCcc
Confidence 9999999999887 567999999999853
No 7
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=1.6e-27 Score=280.88 Aligned_cols=554 Identities=13% Similarity=0.065 Sum_probs=321.6
Q ss_pred cccCCcchhhhHHHHHHHHhhcCChHHHHHHHHHHHHhcCChhhHHhhhhHHHHHHHHHhhhhcCchhHHHHHHHHHHhc
Q 004480 63 VRRDLSSRNDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNEL 142 (750)
Q Consensus 63 l~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~ 142 (750)
+...|.. ...+..++..+.+.|++++|+..++.+.... |... ..+..++..+.+.|++++|.++|+++.+.
T Consensus 322 ~~~~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~--~~~~------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 392 (899)
T TIGR02917 322 LKYAPNS-HQARRLLASIQLRLGRVDEAIATLSPALGLD--PDDP------AALSLLGEAYLALGDFEKAAEYLAKATEL 392 (899)
T ss_pred HHhCCCC-hHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CCCH------HHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 5556666 6666777777788888888888888777663 3221 22234445567778888888888777763
Q ss_pred CCCccccccchhhhhhHHHHHHhhccCcHHHHHHHHHHHHhCCCCCcccccHHHHHHHHHcCCChHHHHHHhhhC----C
Q 004480 143 GVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIV----P 218 (750)
Q Consensus 143 ~~~p~~~~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~----~ 218 (750)
.|+.. ..+..+ ...+...|++++|++.++++.... |........++..+.+.|++++|...+..+ |
T Consensus 393 --~~~~~---~~~~~l---~~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 462 (899)
T TIGR02917 393 --DPENA---AARTQL---GISKLSQGDPSEAIADLETAAQLD--PELGRADLLLILSYLRSGQFDKALAAAKKLEKKQP 462 (899)
T ss_pred --CCCCH---HHHHHH---HHHHHhCCChHHHHHHHHHHHhhC--CcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHhCC
Confidence 34322 111112 222333677777777777776644 444555566666777777777777766553 4
Q ss_pred CCcchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCccHHHHHHHH
Q 004480 219 RADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLM 298 (750)
Q Consensus 219 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll 298 (750)
.+..++..++..|...|++++|...|+++.+... .+...+..+...+...|++++|.+.|+++.+.+ +.+..++..+.
T Consensus 463 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~ 540 (899)
T TIGR02917 463 DNASLHNLLGAIYLGKGDLAKAREAFEKALSIEP-DFFPAAANLARIDIQEGNPDDAIQRFEKVLTID-PKNLRAILALA 540 (899)
T ss_pred CCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCC-CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHH
Confidence 4556677777777777777777777777765332 345566666677777777777777777776553 23444555544
Q ss_pred Hhh--cCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHHcCChHHHHHHHHHHHHhhhcCCCccCHHHHHHHHHHHHhc
Q 004480 299 NVN--AHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADA 376 (750)
Q Consensus 299 ~~~--~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~g~~~~~~~~~~~li~~~~~~ 376 (750)
..+ .|+.++|...++++.+.+ +.+...+..+...+.+.|++++|..+++.+... .+.+...|..+..+|...
T Consensus 541 ~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~ 614 (899)
T TIGR02917 541 GLYLRTGNEEEAVAWLEKAAELN-PQEIEPALALAQYYLGKGQLKKALAILNEAADA-----APDSPEAWLMLGRAQLAA 614 (899)
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC-ccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHc-----CCCCHHHHHHHHHHHHHc
Confidence 443 366777777777776553 345556666777777777777777777776542 234556677777777777
Q ss_pred cCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCChHHHHHHH
Q 004480 377 KWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLF 456 (750)
Q Consensus 377 g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~ 456 (750)
|++++|...|+++.+.. +.+...+..+...+.+.|++++|...|+++.+.. +.+..++..+...+.+.|++++|.+++
T Consensus 615 ~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~ 692 (899)
T TIGR02917 615 GDLNKAVSSFKKLLALQ-PDSALALLLLADAYAVMKNYAKAITSLKRALELK-PDNTEAQIGLAQLLLAAKRTESAKKIA 692 (899)
T ss_pred CCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 77777777777776553 2345566677777777777777777777776543 334666777777777777777777777
Q ss_pred HHHhhcccccccCCC-------CCCchhhhhhhhhhhcccccCCCCccCCCccccccccCCCCccHHHHHHHHHHHH--h
Q 004480 457 RSWTLSKTQVALGED-------YDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACC--T 527 (750)
Q Consensus 457 ~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~--~ 527 (750)
+.+............ ..+........ +.......|+..++..+...+. +
T Consensus 693 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~----------------------~~~~~~~~~~~~~~~~l~~~~~~~g 750 (899)
T TIGR02917 693 KSLQKQHPKAALGFELEGDLYLRQKDYPAAIQA----------------------YRKALKRAPSSQNAIKLHRALLASG 750 (899)
T ss_pred HHHHhhCcCChHHHHHHHHHHHHCCCHHHHHHH----------------------HHHHHhhCCCchHHHHHHHHHHHCC
Confidence 766544311000000 00000000000 0000001233333333444443 2
Q ss_pred cHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 004480 528 DYYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQILKIMREDGMSPDVVAYTTAIKVCVRSKRLKQAFSLFE 607 (750)
Q Consensus 528 ~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 607 (750)
+.++|.+.++.+.+.. +.+...+..+...|...|+.++|..+|+++.+.. +.+...++.+...+...|+ .+|.++++
T Consensus 751 ~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~-~~A~~~~~ 827 (899)
T TIGR02917 751 NTAEAVKTLEAWLKTH-PNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKA-PDNAVVLNNLAWLYLELKD-PRALEYAE 827 (899)
T ss_pred CHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCc-HHHHHHHH
Confidence 4556666666655542 2345555566666666666666666666665542 2345556666666666666 55666666
Q ss_pred HHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh-hhhhhhhc
Q 004480 608 EMKHYQIQP-NLVTYITLLRARSRYGSLHEVQQCLAVYQDMWKAGYKANDTYLKELIEEWCE-GVIQDKNQ 676 (750)
Q Consensus 608 ~m~~~g~~p-~~~t~~~li~~~~~~g~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~-~~~~~~~~ 676 (750)
++.+. .| +..++..+...+...|++++ |+.+|+++.+.+.. +..++..+...+++ |...++.+
T Consensus 828 ~~~~~--~~~~~~~~~~~~~~~~~~g~~~~---A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~ 892 (899)
T TIGR02917 828 KALKL--APNIPAILDTLGWLLVEKGEADR---ALPLLRKAVNIAPE-AAAIRYHLALALLATGRKAEARK 892 (899)
T ss_pred HHHhh--CCCCcHHHHHHHHHHHHcCCHHH---HHHHHHHHHhhCCC-ChHHHHHHHHHHHHcCCHHHHHH
Confidence 66543 22 34455555555666666544 45566666655543 55555555555554 44444443
No 8
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=6.4e-27 Score=275.81 Aligned_cols=433 Identities=13% Similarity=0.085 Sum_probs=255.8
Q ss_pred cCcHHHHHHHHHHHHhCCCCCcccccHHHHHHHHHcCCChHHHHHHhhhC----CCCcchHHHHHHHHHhcCCHHHHHHH
Q 004480 168 SGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIV----PRADILFCNFVREFGKKRDLVSALRA 243 (750)
Q Consensus 168 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~----~~~~~~~~~l~~~~~~~g~~~~A~~~ 243 (750)
.|++++|.++|+++.... |.+...+..++..+...|++++|.+.+... |........++..+.+.|++++|+.+
T Consensus 376 ~g~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 453 (899)
T TIGR02917 376 LGDFEKAAEYLAKATELD--PENAAARTQLGISKLSQGDPSEAIADLETAAQLDPELGRADLLLILSYLRSGQFDKALAA 453 (899)
T ss_pred CCCHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhhCCcchhhHHHHHHHHHhcCCHHHHHHH
Confidence 555555555555555432 444445555555555555555555555442 22334444455555566666666666
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCccHHHHHHHHHh--hcCChHHHHHHHHHHHHcCCC
Q 004480 244 YDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNV--NAHDLKFTLEVYKNMQKLGVM 321 (750)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~--~~~~~~~a~~~~~~m~~~g~~ 321 (750)
++.+.... +.+..+|..+...+...|++++|...|+++.+... .+...+..+... ..|++++|.+.|+++...+ +
T Consensus 454 ~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~ 530 (899)
T TIGR02917 454 AKKLEKKQ-PDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEP-DFFPAAANLARIDIQEGNPDDAIQRFEKVLTID-P 530 (899)
T ss_pred HHHHHHhC-CCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCC-CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-c
Confidence 66555432 23445566666666666666666666666554321 122222222222 2356666666666665543 3
Q ss_pred CCHhhHHHHHHHHHHcCChHHHHHHHHHHHHhhhcCCCccCHHHHHHHHHHHHhccCHHHHHHHHHHHHHCCCCCCHHHH
Q 004480 322 ADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITW 401 (750)
Q Consensus 322 ~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~g~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~ 401 (750)
.+..++..+...+.+.|+.++|...++++... .+.+...+..++..|.+.|++++|..+++.+.... +.+...|
T Consensus 531 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~ 604 (899)
T TIGR02917 531 KNLRAILALAGLYLRTGNEEEAVAWLEKAAEL-----NPQEIEPALALAQYYLGKGQLKKALAILNEAADAA-PDSPEAW 604 (899)
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHH
Confidence 34555556666666666666666666665442 12344455556666666666666666666665442 3345566
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCChHHHHHHHHHHhhcccccccCCCCCCchhhhhh
Q 004480 402 SSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISN 481 (750)
Q Consensus 402 ~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 481 (750)
..+..++.+.|++++|...|+++.+.. +.+...+..+..++.+.|++++|...|+++....
T Consensus 605 ~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~------------------ 665 (899)
T TIGR02917 605 LMLGRAQLAAGDLNKAVSSFKKLLALQ-PDSALALLLLADAYAVMKNYAKAITSLKRALELK------------------ 665 (899)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC------------------
Confidence 666666666666666666666665542 3344555566666666666666666666554321
Q ss_pred hhhhhcccccCCCCccCCCccccccccCCCCccHHHHHHHHHHHH--hcHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 004480 482 MEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACC--TDYYRVKALMNEMRTVGLSPNHISWTILIDACG 559 (750)
Q Consensus 482 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~--~~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~ 559 (750)
+.+..++..+...+. ++.++|..+++.+.+.+ +.+...+..+...+.
T Consensus 666 ------------------------------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~ 714 (899)
T TIGR02917 666 ------------------------------PDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQH-PKAALGFELEGDLYL 714 (899)
T ss_pred ------------------------------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCChHHHHHHHHHHH
Confidence 234555666665554 46777778887777664 345666777777777
Q ss_pred cCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 004480 560 GSGNVEGALQILKIMREDGMSPDVVAYTTAIKVCVRSKRLKQAFSLFEEMKHYQIQPNLVTYITLLRARSRYGSLHEVQQ 639 (750)
Q Consensus 560 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~~~~ 639 (750)
+.|++++|...|+++... .|+..++..+...+.+.|++++|.+.++++.+.. ..+...+..+...|...|+.++
T Consensus 715 ~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~--- 788 (899)
T TIGR02917 715 RQKDYPAAIQAYRKALKR--APSSQNAIKLHRALLASGNTAEAVKTLEAWLKTH-PNDAVLRTALAELYLAQKDYDK--- 788 (899)
T ss_pred HCCCHHHHHHHHHHHHhh--CCCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHH---
Confidence 888888888888877765 3555666777777778888888888887777642 3456777777777777777665
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 004480 640 CLAVYQDMWKAGYKANDTYLKELIEEWCE 668 (750)
Q Consensus 640 a~~~~~~m~~~g~~p~~~~~~~li~~~~~ 668 (750)
|..+|+++.+.. +.+...++.+...+.+
T Consensus 789 A~~~~~~~~~~~-p~~~~~~~~l~~~~~~ 816 (899)
T TIGR02917 789 AIKHYRTVVKKA-PDNAVVLNNLAWLYLE 816 (899)
T ss_pred HHHHHHHHHHhC-CCCHHHHHHHHHHHHh
Confidence 566777777654 2456666666666655
No 9
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.93 E-value=1.4e-19 Score=213.28 Aligned_cols=541 Identities=12% Similarity=0.014 Sum_probs=363.3
Q ss_pred hhhccccCCcchhhhHHHHHHHHhhcCChHHHHHHHHHHHHhcCChhhHHhhhhHH----------HHHHHHHhhhhcCc
Q 004480 59 LLSTVRRDLSSRNDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLE----------MVASGIVKSIREGR 128 (750)
Q Consensus 59 ~~~~l~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~----------~~~~~~~~~~~~g~ 128 (750)
+.+.+..+|++ +..+..++..+...|+.++|...++++.+.. |.......... ........+...|+
T Consensus 51 l~kl~~~~p~~-p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~~--P~~~~~~~~~~~~~~~~~~~~~~l~~A~ll~~~g~ 127 (1157)
T PRK11447 51 LYRLELIDPNN-PDVIAARFRLLLRQGDSDGAQKLLDRLSQLA--PDSNAYRSSRTTMLLSTPEGRQALQQARLLATTGR 127 (1157)
T ss_pred HHHHHccCCCC-HHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC--CCChHHHHHHHHHHhcCCchhhHHHHHHHHHhCCC
Confidence 33447788998 8889999999999999999999999999994 44322211110 11233445788999
Q ss_pred hhHHHHHHHHHHhcCCCccccccchhhhhhHHHHHHhhccCcHHHHHHHHHHHHhCCCCCcccccHHHHHHHHHcCCChH
Q 004480 129 IDCVVGVLKKLNELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVN 208 (750)
Q Consensus 129 ~~~A~~~l~~~~~~~~~p~~~~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 208 (750)
+++|++.|+++.+.+ |.... .... +..... ...|+.++|++.|+++.+.. |.+...+..++..+...|+.+
T Consensus 128 ~~eA~~~~~~~l~~~--p~~~~--la~~-y~~~~~--~~~g~~~~A~~~L~~ll~~~--P~~~~~~~~LA~ll~~~g~~~ 198 (1157)
T PRK11447 128 TEEALASYDKLFNGA--PPELD--LAVE-YWRLVA--KLPAQRPEAINQLQRLNADY--PGNTGLRNTLALLLFSSGRRD 198 (1157)
T ss_pred HHHHHHHHHHHccCC--CCChH--HHHH-HHHHHh--hCCccHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHccCCHH
Confidence 999999999999742 32210 0111 111111 12599999999999999865 888888999999999999999
Q ss_pred HHHHHhhhCCCC--------------------------------------cch---H-----------------HHHHHH
Q 004480 209 LAIRYACIVPRA--------------------------------------DIL---F-----------------CNFVRE 230 (750)
Q Consensus 209 ~A~~~~~~~~~~--------------------------------------~~~---~-----------------~~l~~~ 230 (750)
+|+..++.+... ... . ......
T Consensus 199 eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~~~~~~G~~ 278 (1157)
T PRK11447 199 EGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPAFRARAQGLA 278 (1157)
T ss_pred HHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcchHHHHHHHH
Confidence 999987664110 000 0 012345
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCc-cHHHHHHHH---------H-
Q 004480 231 FGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTL-NIYVFNSLM---------N- 299 (750)
Q Consensus 231 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~-~~~~~~~ll---------~- 299 (750)
+...|++++|+..|++..+..+ .+..++..+..++.+.|++++|+..|++..+..... +...|..++ .
T Consensus 279 ~~~~g~~~~A~~~l~~aL~~~P-~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~ 357 (1157)
T PRK11447 279 AVDSGQGGKAIPELQQAVRANP-KDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQ 357 (1157)
T ss_pred HHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHH
Confidence 6678999999999999988532 367889999999999999999999999998764332 222222221 1
Q ss_pred ----hhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHHcCChHHHHHHHHHHHHhhhcCCCccCHHHHHHHHHHHHh
Q 004480 300 ----VNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFAD 375 (750)
Q Consensus 300 ----~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~g~~~~~~~~~~~li~~~~~ 375 (750)
...|++++|...|++..+.. +.+...+..+...+...|++++|.+.|+++.+. -+.+...+..+...|.
T Consensus 358 g~~~~~~g~~~eA~~~~~~Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~-----~p~~~~a~~~L~~l~~- 430 (1157)
T PRK11447 358 GDAALKANNLAQAERLYQQARQVD-NTDSYAVLGLGDVAMARKDYAAAERYYQQALRM-----DPGNTNAVRGLANLYR- 430 (1157)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-----CCCCHHHHHHHHHHHH-
Confidence 23479999999999998864 445677788899999999999999999999873 1233455666666553
Q ss_pred ccCHHHHHHHHHHHHHCCCC--------CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhC
Q 004480 376 AKWWQMALKVKEDMLSAGVT--------PNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEAC 447 (750)
Q Consensus 376 ~g~~~~a~~~~~~m~~~g~~--------p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g 447 (750)
.++.++|+.+++.+...... .....+..+...+...|++++|++.|++..+.. +-+...+..+...|.+.|
T Consensus 431 ~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~-P~~~~~~~~LA~~~~~~G 509 (1157)
T PRK11447 431 QQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALD-PGSVWLTYRLAQDLRQAG 509 (1157)
T ss_pred hcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcC
Confidence 45677777777654322100 012235566777777888888888888877653 234566677777788888
Q ss_pred ChHHHHHHHHHHhhcccccccCCC-------CCCchhhhhhhhhhhcccccCCCCccCCCccccccccCCCCccHHH---
Q 004480 448 QFDRAFRLFRSWTLSKTQVALGED-------YDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTT--- 517 (750)
Q Consensus 448 ~~~~A~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~--- 517 (750)
++++|...++++............ ..+........... +......++...
T Consensus 510 ~~~~A~~~l~~al~~~P~~~~~~~a~al~l~~~~~~~~Al~~l~~--------------------l~~~~~~~~~~~l~~ 569 (1157)
T PRK11447 510 QRSQADALMRRLAQQKPNDPEQVYAYGLYLSGSDRDRAALAHLNT--------------------LPRAQWNSNIQELAQ 569 (1157)
T ss_pred CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHh--------------------CCchhcChhHHHHHH
Confidence 888888888877653321100000 00000000000000 000000111111
Q ss_pred ------HHHHHHHHH--hcHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 004480 518 ------YNILMKACC--TDYYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQILKIMREDGMSPDVVAYTTA 589 (750)
Q Consensus 518 ------~~~li~~~~--~~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l 589 (750)
+......+. ++.++|..+++. .+.+...+..+...+.+.|+.++|+..|++..+.. +.+...+..+
T Consensus 570 ~l~~~~~l~~a~~l~~~G~~~eA~~~l~~-----~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~-P~~~~a~~~l 643 (1157)
T PRK11447 570 RLQSDQVLETANRLRDSGKEAEAEALLRQ-----QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTRE-PGNADARLGL 643 (1157)
T ss_pred HHhhhHHHHHHHHHHHCCCHHHHHHHHHh-----CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHH
Confidence 111222232 467888888772 24456677788899999999999999999998853 2257889999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHcC
Q 004480 590 IKVCVRSKRLKQAFSLFEEMKHYQIQP-NLVTYITLLRARSRYGSLHEVQQCLAVYQDMWKAG 651 (750)
Q Consensus 590 i~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~li~~~~~~g~~~~~~~a~~~~~~m~~~g 651 (750)
+..|...|+.++|.+.++...+. .| +..++..+..++...|+.++ |.++|+++....
T Consensus 644 a~~~~~~g~~~eA~~~l~~ll~~--~p~~~~~~~~la~~~~~~g~~~e---A~~~~~~al~~~ 701 (1157)
T PRK11447 644 IEVDIAQGDLAAARAQLAKLPAT--ANDSLNTQRRVALAWAALGDTAA---AQRTFNRLIPQA 701 (1157)
T ss_pred HHHHHHCCCHHHHHHHHHHHhcc--CCCChHHHHHHHHHHHhCCCHHH---HHHHHHHHhhhC
Confidence 99999999999999999988753 45 45667778888888998777 566888877643
No 10
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.91 E-value=1.2e-18 Score=205.58 Aligned_cols=497 Identities=13% Similarity=0.045 Sum_probs=277.2
Q ss_pred hcCChHHHHHHHHHHHHhcCChhhHHhhhhHHHHHHHHHhhhhcCchhHHHHHHHHHHhcCCCcccc------------c
Q 004480 83 KDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLEL------------F 150 (750)
Q Consensus 83 ~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~p~~~------------~ 150 (750)
..|++++|+..++++++. .|...... ..+...+...|++++|+..|+++.+........ .
T Consensus 159 ~~g~~~~A~~~L~~ll~~--~P~~~~~~------~~LA~ll~~~g~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~ 230 (1157)
T PRK11447 159 LPAQRPEAINQLQRLNAD--YPGNTGLR------NTLALLLFSSGRRDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPV 230 (1157)
T ss_pred CCccHHHHHHHHHHHHHh--CCCCHHHH------HHHHHHHHccCCHHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCC
Confidence 458888888888888888 45433322 234444778899999999988876532100000 0
Q ss_pred cchhhhhhHHH----------------------------------HHHhhccCcHHHHHHHHHHHHhCCCCCcccccHHH
Q 004480 151 DGSGFKLLKNE----------------------------------CQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFR 196 (750)
Q Consensus 151 ~~~~~~~l~~~----------------------------------~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ 196 (750)
.......+... ...+...|++++|+..|++.+... |++...+..
T Consensus 231 ~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~~~~~~G~~~~~~g~~~~A~~~l~~aL~~~--P~~~~a~~~ 308 (1157)
T PRK11447 231 SDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPAFRARAQGLAAVDSGQGGKAIPELQQAVRAN--PKDSEALGA 308 (1157)
T ss_pred ChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHH
Confidence 00000000000 112233566666666666665533 555555666
Q ss_pred HHHHHHcCCChHHHHHHhhhC----CCCcc--hH------------HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHH
Q 004480 197 IVQLCVNKPDVNLAIRYACIV----PRADI--LF------------CNFVREFGKKRDLVSALRAYDASKKHLSSPNMYI 258 (750)
Q Consensus 197 l~~~~~~~~~~~~A~~~~~~~----~~~~~--~~------------~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 258 (750)
++..+.+.|++++|+..|++. |.+.. .+ ......+.+.|++++|+..|+++.+..+ .+...
T Consensus 309 Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~P-~~~~a 387 (1157)
T PRK11447 309 LGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQVDN-TDSYA 387 (1157)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHH
Confidence 666666666666666655442 22111 01 1123344556666666666666655322 23445
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCccHHHHHHHHHhh-cCChHHHHHHHHHHHHcCC--------CCCHhhHHH
Q 004480 259 CRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVN-AHDLKFTLEVYKNMQKLGV--------MADMASYNI 329 (750)
Q Consensus 259 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~-~~~~~~a~~~~~~m~~~g~--------~~~~~~~~~ 329 (750)
+..+...+...|++++|++.|++..+... .+...+..+...+ .++.++|...++.+..... ......+..
T Consensus 388 ~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p-~~~~a~~~L~~l~~~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~ 466 (1157)
T PRK11447 388 VLGLGDVAMARKDYAAAERYYQQALRMDP-GNTNAVRGLANLYRQQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQ 466 (1157)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHH
Confidence 55555666666666666666666654421 1222333333322 2345555555544322100 000112334
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHhhhcCCCccCHHHHHHHHHHHHhccCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 004480 330 LLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACA 409 (750)
Q Consensus 330 ll~~~~~~g~~~~A~~~~~~~~~~~~~g~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~ 409 (750)
+...+...|++++|.+.|++..+. -+-+...+..+...|.+.|++++|...++++.+... .+...+..+...+.
T Consensus 467 ~a~~~~~~g~~~eA~~~~~~Al~~-----~P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~P-~~~~~~~a~al~l~ 540 (1157)
T PRK11447 467 QAEALENQGKWAQAAELQRQRLAL-----DPGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQKP-NDPEQVYAYGLYLS 540 (1157)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHh-----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHH
Confidence 445555666666666666665542 122344455555566666666666666666654321 13333333444445
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCCHH---------HHHHHHHHHHHhCChHHHHHHHHHHhhcccccccCCCCCCchhhhh
Q 004480 410 NAGLVEQAMHLFEEMLQAGCEPNSQ---------CCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRIS 480 (750)
Q Consensus 410 ~~g~~~~a~~~~~~m~~~~~~p~~~---------~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 480 (750)
+.++.++|...++.+......++.. .+..+...+...|+.++|.++++.
T Consensus 541 ~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~---------------------- 598 (1157)
T PRK11447 541 GSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQ---------------------- 598 (1157)
T ss_pred hCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHh----------------------
Confidence 5566666666665543222111111 112233445556666666665541
Q ss_pred hhhhhhcccccCCCCccCCCccccccccCCCCccHHHHHHHHHHHH--hcHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 004480 481 NMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACC--TDYYRVKALMNEMRTVGLSPNHISWTILIDAC 558 (750)
Q Consensus 481 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~--~~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~ 558 (750)
.+.+...+..+-..+. ++.++|...|++..+.. +.+...+..+...|
T Consensus 599 ------------------------------~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~-P~~~~a~~~la~~~ 647 (1157)
T PRK11447 599 ------------------------------QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTRE-PGNADARLGLIEVD 647 (1157)
T ss_pred ------------------------------CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 1223333434444443 57899999999999863 23567889999999
Q ss_pred HcCCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC--CC---CHHHHHHHHHHHHhcC
Q 004480 559 GGSGNVEGALQILKIMREDGMSP-DVVAYTTAIKVCVRSKRLKQAFSLFEEMKHYQI--QP---NLVTYITLLRARSRYG 632 (750)
Q Consensus 559 ~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~--~p---~~~t~~~li~~~~~~g 632 (750)
...|+.++|++.++...+. .| +...+..+..++...|++++|.++++++....- .| +...+..+...+...|
T Consensus 648 ~~~g~~~eA~~~l~~ll~~--~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G 725 (1157)
T PRK11447 648 IAQGDLAAARAQLAKLPAT--ANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTG 725 (1157)
T ss_pred HHCCCHHHHHHHHHHHhcc--CCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcC
Confidence 9999999999999988764 44 456677788889999999999999999986421 12 2356666778888899
Q ss_pred CHHHHHHHHHHHHHHH-HcCCCCC
Q 004480 633 SLHEVQQCLAVYQDMW-KAGYKAN 655 (750)
Q Consensus 633 ~~~~~~~a~~~~~~m~-~~g~~p~ 655 (750)
+.++ |+..|++.. ..|+.|+
T Consensus 726 ~~~~---A~~~y~~Al~~~~~~~~ 746 (1157)
T PRK11447 726 QPQQ---ALETYKDAMVASGITPT 746 (1157)
T ss_pred CHHH---HHHHHHHHHhhcCCCCC
Confidence 9877 555666664 3556543
No 11
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.90 E-value=3.9e-20 Score=183.22 Aligned_cols=451 Identities=16% Similarity=0.166 Sum_probs=290.7
Q ss_pred hhhccccCCcchhhhHHHHHHHHhhcCChHHHHHHHHHHHHhcCChhhHHhhhhHHHHHHHHHhhhhcCchhHHHHHHHH
Q 004480 59 LLSTVRRDLSSRNDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKK 138 (750)
Q Consensus 59 ~~~~l~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~ 138 (750)
++++....|.. ......|+..+-+.|++++|++.....-.. +|..-..++..... +.+..+++.-...-..
T Consensus 37 v~qq~~~t~~~-~~~~l~lah~~yq~gd~~~a~~h~nmv~~~--d~t~~~~llll~ai------~~q~~r~d~s~a~~~~ 107 (966)
T KOG4626|consen 37 VLQQFNKTHEG-SDDRLELAHRLYQGGDYKQAEKHCNMVGQE--DPTNTERLLLLSAI------FFQGSRLDKSSAGSLL 107 (966)
T ss_pred HHHHhccCCcc-chhHHHHHHHHHhccCHHHHHHHHhHhhcc--CCCcccceeeehhh------hhcccchhhhhhhhhh
Confidence 44555555665 444667777888899999999988877666 55544443333333 5666677765554444
Q ss_pred HHhcCCCccccccchhhhhhHHHHHHhhccCcHHHHHHHHHHHHhCCCCCcccccHHHHHHHHHcCCChHHHHHHhhhC-
Q 004480 139 LNELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIV- 217 (750)
Q Consensus 139 ~~~~~~~p~~~~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~- 217 (750)
.++. .|- ....++.+.+.+.. .|++.+|+.+++.+++.. |+....|..++.++...|+.+.|.+.|...
T Consensus 108 a~r~--~~q---~ae~ysn~aN~~ke---rg~~~~al~~y~~aiel~--p~fida~inla~al~~~~~~~~a~~~~~~al 177 (966)
T KOG4626|consen 108 AIRK--NPQ---GAEAYSNLANILKE---RGQLQDALALYRAAIELK--PKFIDAYINLAAALVTQGDLELAVQCFFEAL 177 (966)
T ss_pred hhhc--cch---HHHHHHHHHHHHHH---hchHHHHHHHHHHHHhcC--chhhHHHhhHHHHHHhcCCCcccHHHHHHHH
Confidence 4442 231 22355555555444 899999999999999854 888888999999999999998888876553
Q ss_pred ---CCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCccHHH
Q 004480 218 ---PRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPN-MYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYV 293 (750)
Q Consensus 218 ---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~ 293 (750)
|...-+.+.+...+-..|++.+|...|.+.++. .|. .++|+.|...+-.+|+...|+.-|++.++.. |+
T Consensus 178 qlnP~l~ca~s~lgnLlka~Grl~ea~~cYlkAi~~--qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkld--P~--- 250 (966)
T KOG4626|consen 178 QLNPDLYCARSDLGNLLKAEGRLEEAKACYLKAIET--QPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLD--PN--- 250 (966)
T ss_pred hcCcchhhhhcchhHHHHhhcccchhHHHHHHHHhh--CCceeeeehhcchHHhhcchHHHHHHHHHHhhcCC--Cc---
Confidence 333344445666677778888888888888773 344 4578888888888888888888888877542 21
Q ss_pred HHHHHHhhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHHcCChHHHHHHHHHHHHhhhcCCCccC-HHHHHHHHHH
Q 004480 294 FNSLMNVNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLD-VFTYSTIVKV 372 (750)
Q Consensus 294 ~~~ll~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~g~~~~~-~~~~~~li~~ 372 (750)
-...|-.|.+.|...+.+++|...|..... ..|+ ...+..|...
T Consensus 251 -----------------------------f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~------lrpn~A~a~gNla~i 295 (966)
T KOG4626|consen 251 -----------------------------FLDAYINLGNVYKEARIFDRAVSCYLRALN------LRPNHAVAHGNLACI 295 (966)
T ss_pred -----------------------------chHHHhhHHHHHHHHhcchHHHHHHHHHHh------cCCcchhhccceEEE
Confidence 133455555555555555555555555544 2232 3345555555
Q ss_pred HHhccCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCChHH
Q 004480 373 FADAKWWQMALKVKEDMLSAGVTPN-TITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDR 451 (750)
Q Consensus 373 ~~~~g~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~ 451 (750)
|-..|.++-|++.|++.++. .|+ ...|+.|..++...|++.+|++.+.+.+... .-.....+.|...|...|.+++
T Consensus 296 YyeqG~ldlAI~~Ykral~~--~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~-p~hadam~NLgni~~E~~~~e~ 372 (966)
T KOG4626|consen 296 YYEQGLLDLAIDTYKRALEL--QPNFPDAYNNLANALKDKGSVTEAVDCYNKALRLC-PNHADAMNNLGNIYREQGKIEE 372 (966)
T ss_pred EeccccHHHHHHHHHHHHhc--CCCchHHHhHHHHHHHhccchHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhccchH
Confidence 55555555565555555553 222 3455555555555566666665555555432 2234455555555555555666
Q ss_pred HHHHHHHHhhcccccccCCCCCCchhhhhhhhhhhcccccCCCCccCCCccccccccCCCCccH-HHHHHHHHHHH--hc
Q 004480 452 AFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTT-TTYNILMKACC--TD 528 (750)
Q Consensus 452 A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~-~~~~~li~~~~--~~ 528 (750)
|.++|.....- .|.. ...|.+-..|. ++
T Consensus 373 A~~ly~~al~v-------------------------------------------------~p~~aaa~nNLa~i~kqqgn 403 (966)
T KOG4626|consen 373 ATRLYLKALEV-------------------------------------------------FPEFAAAHNNLASIYKQQGN 403 (966)
T ss_pred HHHHHHHHHhh-------------------------------------------------ChhhhhhhhhHHHHHHhccc
Confidence 55555543321 1211 12222323332 24
Q ss_pred HHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHH
Q 004480 529 YYRVKALMNEMRTVGLSPNHI-SWTILIDACGGSGNVEGALQILKIMREDGMSPD-VVAYTTAIKVCVRSKRLKQAFSLF 606 (750)
Q Consensus 529 ~~~a~~l~~~m~~~~~~p~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~~ 606 (750)
+++|..-+++... +.|+.. .|+.+...|-..|+++.|.+.+.+.+. +.|. ...++.|...|-..|++.+|++-|
T Consensus 404 l~~Ai~~Ykealr--I~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~--~nPt~AeAhsNLasi~kDsGni~~AI~sY 479 (966)
T KOG4626|consen 404 LDDAIMCYKEALR--IKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQ--INPTFAEAHSNLASIYKDSGNIPEAIQSY 479 (966)
T ss_pred HHHHHHHHHHHHh--cCchHHHHHHhcchHHHHhhhHHHHHHHHHHHHh--cCcHHHHHHhhHHHHhhccCCcHHHHHHH
Confidence 5555555555555 567654 788999999999999999999999987 4666 567899999999999999999999
Q ss_pred HHHHHCCCCCC-HHHHHHHHHHH
Q 004480 607 EEMKHYQIQPN-LVTYITLLRAR 628 (750)
Q Consensus 607 ~~m~~~g~~p~-~~t~~~li~~~ 628 (750)
++..+ ++|| +..|-.++.++
T Consensus 480 ~~aLk--lkPDfpdA~cNllh~l 500 (966)
T KOG4626|consen 480 RTALK--LKPDFPDAYCNLLHCL 500 (966)
T ss_pred HHHHc--cCCCCchhhhHHHHHH
Confidence 99986 6787 44555555544
No 12
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.90 E-value=3.5e-20 Score=183.53 Aligned_cols=368 Identities=14% Similarity=0.116 Sum_probs=315.7
Q ss_pred hccccCCcchhhhHHHHHHHHhhcCChHHHHHHHHHHHHhcCChhhHHhhhhHHHHHHHHHhhhhcCchhHHHHHHHHHH
Q 004480 61 STVRRDLSSRNDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLN 140 (750)
Q Consensus 61 ~~l~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~ 140 (750)
..++..|-. .+.|..++..+-..|++.+|+.+++.+++. +|.. .+.+.++..++...|+.+.|.+.|.+++
T Consensus 107 ~a~r~~~q~-ae~ysn~aN~~kerg~~~~al~~y~~aiel--~p~f------ida~inla~al~~~~~~~~a~~~~~~al 177 (966)
T KOG4626|consen 107 LAIRKNPQG-AEAYSNLANILKERGQLQDALALYRAAIEL--KPKF------IDAYINLAAALVTQGDLELAVQCFFEAL 177 (966)
T ss_pred hhhhccchH-HHHHHHHHHHHHHhchHHHHHHHHHHHHhc--Cchh------hHHHhhHHHHHHhcCCCcccHHHHHHHH
Confidence 346667777 889999999999999999999999999999 6664 4555667777999999999999999999
Q ss_pred hcCCCccccccchhhhhhHHHHHHhhccCcHHHHHHHHHHHHhCCCCCcccccHHHHHHHHHcCCChHHHHHHhhhC---
Q 004480 141 ELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIV--- 217 (750)
Q Consensus 141 ~~~~~p~~~~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~--- 217 (750)
+ +.|+.....+..+.|+++ .|+.++|...|-+.+... |.....|..|+-.+..+|+.-.|++.|++.
T Consensus 178 q--lnP~l~ca~s~lgnLlka------~Grl~ea~~cYlkAi~~q--p~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkl 247 (966)
T KOG4626|consen 178 Q--LNPDLYCARSDLGNLLKA------EGRLEEAKACYLKAIETQ--PCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKL 247 (966)
T ss_pred h--cCcchhhhhcchhHHHHh------hcccchhHHHHHHHHhhC--CceeeeehhcchHHhhcchHHHHHHHHHHhhcC
Confidence 7 788777666666666653 799999999999988744 888999999999999999999999999885
Q ss_pred -CCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcc-HHHH
Q 004480 218 -PRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPN-MYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLN-IYVF 294 (750)
Q Consensus 218 -~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~-~~~~ 294 (750)
|.-..+|.+|...|...+.+++|+..|.+... ..|+ ..+|..+...|-.+|.++-|+..|++..+. .|+ ...|
T Consensus 248 dP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~--lrpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~--~P~F~~Ay 323 (966)
T KOG4626|consen 248 DPNFLDAYINLGNVYKEARIFDRAVSCYLRALN--LRPNHAVAHGNLACIYYEQGLLDLAIDTYKRALEL--QPNFPDAY 323 (966)
T ss_pred CCcchHHHhhHHHHHHHHhcchHHHHHHHHHHh--cCCcchhhccceEEEEeccccHHHHHHHHHHHHhc--CCCchHHH
Confidence 45558999999999999999999999999887 3454 678888888899999999999999999876 455 4578
Q ss_pred HHHHHhhc--CChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHHcCChHHHHHHHHHHHHhhhcCCCccC-HHHHHHHHH
Q 004480 295 NSLMNVNA--HDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLD-VFTYSTIVK 371 (750)
Q Consensus 295 ~~ll~~~~--~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~g~~~~~-~~~~~~li~ 371 (750)
+.+-.+.. |++.+|++.|+...... +......+.|.+.|...|.+++|..+|....+ +.|. ...++.|..
T Consensus 324 ~NlanALkd~G~V~ea~~cYnkaL~l~-p~hadam~NLgni~~E~~~~e~A~~ly~~al~------v~p~~aaa~nNLa~ 396 (966)
T KOG4626|consen 324 NNLANALKDKGSVTEAVDCYNKALRLC-PNHADAMNNLGNIYREQGKIEEATRLYLKALE------VFPEFAAAHNNLAS 396 (966)
T ss_pred hHHHHHHHhccchHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhccchHHHHHHHHHHh------hChhhhhhhhhHHH
Confidence 88877754 89999999999998764 34577889999999999999999999999887 4555 456999999
Q ss_pred HHHhccCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHHhCCh
Q 004480 372 VFADAKWWQMALKVKEDMLSAGVTPN-TITWSSLINACANAGLVEQAMHLFEEMLQAGCEPN-SQCCNILLQACVEACQF 449 (750)
Q Consensus 372 ~~~~~g~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~g~~ 449 (750)
.|-+.|++++|+..|++.++- .|+ ...|+.+...|...|+++.|.+.+.+..+. .|. ...++.|...|-.+|++
T Consensus 397 i~kqqgnl~~Ai~~YkealrI--~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~--nPt~AeAhsNLasi~kDsGni 472 (966)
T KOG4626|consen 397 IYKQQGNLDDAIMCYKEALRI--KPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQI--NPTFAEAHSNLASIYKDSGNI 472 (966)
T ss_pred HHHhcccHHHHHHHHHHHHhc--CchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhc--CcHHHHHHhhHHHHhhccCCc
Confidence 999999999999999999874 666 578999999999999999999999999876 453 56789999999999999
Q ss_pred HHHHHHHHHHhhc
Q 004480 450 DRAFRLFRSWTLS 462 (750)
Q Consensus 450 ~~A~~~~~~~~~~ 462 (750)
.+|..-|++..+.
T Consensus 473 ~~AI~sY~~aLkl 485 (966)
T KOG4626|consen 473 PEAIQSYRTALKL 485 (966)
T ss_pred HHHHHHHHHHHcc
Confidence 9999999987653
No 13
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.87 E-value=1.7e-16 Score=178.48 Aligned_cols=500 Identities=9% Similarity=-0.049 Sum_probs=285.7
Q ss_pred hhhccccCCcchhhhHHHHHHHHhhcCChHHHHHHHHHHHHhcCChhhHHhhhhHHHHHHHHHhhhhcCchhHHHHHHHH
Q 004480 59 LLSTVRRDLSSRNDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKK 138 (750)
Q Consensus 59 ~~~~l~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~ 138 (750)
+.+.+..+|++ ...+..+++.+.+.|++++|+..++++++. +|+........ ...+++++|..++++
T Consensus 67 l~~Al~~dP~n-~~~~~~LA~~yl~~g~~~~A~~~~~kAv~l--dP~n~~~~~~L----------a~i~~~~kA~~~ye~ 133 (987)
T PRK09782 67 FEYIHQQVPDN-IPLTLYLAEAYRHFGHDDRARLLLEDQLKR--HPGDARLERSL----------AAIPVEVKSVTTVEE 133 (987)
T ss_pred HHHHHHhCCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CcccHHHHHHH----------HHhccChhHHHHHHH
Confidence 33448899999 899999999999999999999999999999 66543332221 122999999999999
Q ss_pred HHhcCCCccccccchhhhhhHHH-----HHHhhccCcHHHHHHHHHHHHhCCCCCcccccHHHHHHHHHcCCChHHHHHH
Q 004480 139 LNELGVAPLELFDGSGFKLLKNE-----CQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRY 213 (750)
Q Consensus 139 ~~~~~~~p~~~~~~~~~~~l~~~-----~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 213 (750)
+.+. .|+.... +..+... ...|. +.++|.+.++ .......|........+.+.|.+.+++++|+..
T Consensus 134 l~~~--~P~n~~~---~~~la~~~~~~~~l~y~---q~eqAl~AL~-lr~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai~l 204 (987)
T PRK09782 134 LLAQ--QKACDAV---PTLRCRSEVGQNALRLA---QLPVARAQLN-DATFAASPEGKTLRTDLLQRAIYLKQWSQADTL 204 (987)
T ss_pred HHHh--CCCChhH---HHHHHHHhhccchhhhh---hHHHHHHHHH-HhhhCCCCCcHHHHHHHHHHHHHHhCHHHHHHH
Confidence 9984 5543311 1111111 00111 2233333333 222121122222333335555555555555555
Q ss_pred hhhC----CCCcchHHHHHHHHHh-cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 004480 214 ACIV----PRADILFCNFVREFGK-KRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVT 288 (750)
Q Consensus 214 ~~~~----~~~~~~~~~l~~~~~~-~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 288 (750)
+..+ |.+......|...|.. .++ +++..++.. .++-+...+..+...|.+.|+.++|.++++++...-..
T Consensus 205 L~~L~k~~pl~~~~~~~L~~ay~q~l~~-~~a~al~~~----~lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~~~ 279 (987)
T PRK09782 205 YNEARQQNTLSAAERRQWFDVLLAGQLD-DRLLALQSQ----GIFTDPQSRITYATALAYRGEKARLQHYLIENKPLFTT 279 (987)
T ss_pred HHHHHhcCCCCHHHHHHHHHHHHHhhCH-HHHHHHhch----hcccCHHHHHHHHHHHHHCCCHHHHHHHHHhCcccccC
Confidence 5443 2222333344444444 244 444444332 12234455555555555555555555555544322110
Q ss_pred -ccHHHH-------------------------------------------------------------------------
Q 004480 289 -LNIYVF------------------------------------------------------------------------- 294 (750)
Q Consensus 289 -~~~~~~------------------------------------------------------------------------- 294 (750)
|+..+|
T Consensus 280 ~~~~~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~ 359 (987)
T PRK09782 280 DAQEKSWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLLATLPANEMLEERYAVSVATRNKA 359 (987)
T ss_pred CCccHHHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHhcCCCcchHHHHHHhhccccCchh
Confidence 111111
Q ss_pred ----------------------HHHHHhhcCChHHHHHHHHHHHHc--CCCCCHhhHHHHHHHHHHcCC---hHHHHHH-
Q 004480 295 ----------------------NSLMNVNAHDLKFTLEVYKNMQKL--GVMADMASYNILLKACCLAGN---TVLAQEI- 346 (750)
Q Consensus 295 ----------------------~~ll~~~~~~~~~a~~~~~~m~~~--g~~~~~~~~~~ll~~~~~~g~---~~~A~~~- 346 (750)
.+.+....|+.++|.++|...... ....+....+-++..|.+.+. ..++..+
T Consensus 360 ~~~~~~~~~y~~~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~ 439 (987)
T PRK09782 360 EALRLARLLYQQEPANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILS 439 (987)
T ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhc
Confidence 011111123334444444444331 011223333345555555544 2222111
Q ss_pred ---------------------HHHHHHhhhcCCCcc--CHHHHHHHHHHHHhccCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 004480 347 ---------------------YGEVKHLEAKGVLKL--DVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSS 403 (750)
Q Consensus 347 ---------------------~~~~~~~~~~g~~~~--~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ 403 (750)
++..... -+..++ +...|..+..++.. ++.++|...+.+.... .|+......
T Consensus 440 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a--l~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~--~Pd~~~~L~ 514 (987)
T PRK09782 440 KPLPLAEQRQWQSQLPGIADNCPAIVRL--LGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQR--QPDAWQHRA 514 (987)
T ss_pred cccccchhHHHHhhhhhhhhhHHHHHHh--cccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHh--CCchHHHHH
Confidence 1111111 000122 45556666666655 6777777766666654 345444333
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCChHHHHHHHHHHhhcccccccCCCCCCchhhhhhhh
Q 004480 404 LINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNME 483 (750)
Q Consensus 404 li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 483 (750)
+...+...|++++|...|+++... .|+...+..+..++.+.|+.++|...+++....
T Consensus 515 lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l--------------------- 571 (987)
T PRK09782 515 VAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQR--------------------- 571 (987)
T ss_pred HHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhc---------------------
Confidence 444445777777777777776543 344445555566677777777777777766542
Q ss_pred hhhcccccCCCCccCCCccccccccCCCCccHHHHHHHHHHHH---hcHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc
Q 004480 484 HKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACC---TDYYRVKALMNEMRTVGLSPNHISWTILIDACGG 560 (750)
Q Consensus 484 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~---~~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~ 560 (750)
.|+.......+.... ++.++|...+++..+. .|+...|..+...+.+
T Consensus 572 ----------------------------~P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l--~P~~~a~~~LA~~l~~ 621 (987)
T PRK09782 572 ----------------------------GLGDNALYWWLHAQRYIPGQPELALNDLTRSLNI--APSANAYVARATIYRQ 621 (987)
T ss_pred ----------------------------CCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh--CCCHHHHHHHHHHHHH
Confidence 232222222222222 6889999999998874 5677888889999999
Q ss_pred CCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHH
Q 004480 561 SGNVEGALQILKIMREDGMSPD-VVAYTTAIKVCVRSKRLKQAFSLFEEMKHYQIQP-NLVTYITLLRARSRYGSLHEVQ 638 (750)
Q Consensus 561 ~g~~~~A~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~li~~~~~~g~~~~~~ 638 (750)
.|+.++|+..+++..+. .|+ ...++.+...+...|+.++|.+.|++..+. .| +...+..+..++...|+.+++
T Consensus 622 lG~~deA~~~l~~AL~l--~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l--~P~~~~a~~nLA~al~~lGd~~eA- 696 (987)
T PRK09782 622 RHNVPAAVSDLRAALEL--EPNNSNYQAALGYALWDSGDIAQSREMLERAHKG--LPDDPALIRQLAYVNQRLDDMAAT- 696 (987)
T ss_pred CCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHH-
Confidence 99999999999999885 454 667788888899999999999999998873 56 577888999999999998874
Q ss_pred HHHHHHHHHHHc
Q 004480 639 QCLAVYQDMWKA 650 (750)
Q Consensus 639 ~a~~~~~~m~~~ 650 (750)
...|++..+.
T Consensus 697 --~~~l~~Al~l 706 (987)
T PRK09782 697 --QHYARLVIDD 706 (987)
T ss_pred --HHHHHHHHhc
Confidence 5566666653
No 14
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.86 E-value=1e-18 Score=183.77 Aligned_cols=311 Identities=14% Similarity=0.116 Sum_probs=188.8
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCccHHHHHHHHHhhcCCh
Q 004480 226 NFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDL 305 (750)
Q Consensus 226 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~ 305 (750)
.....+...|++++|+..|.++.+.++ .+..++..+...+...|++++|..+++.+...+..++.
T Consensus 40 ~~g~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~-------------- 104 (389)
T PRK11788 40 FKGLNFLLNEQPDKAIDLFIEMLKVDP-ETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTRE-------------- 104 (389)
T ss_pred HHHHHHHhcCChHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHH--------------
Confidence 334456677889999999999987542 35668888888889999999999998888764211110
Q ss_pred HHHHHHHHHHHHcCCCCCHhhHHHHHHHHHHcCChHHHHHHHHHHHHhhhcCCCccCHHHHHHHHHHHHhccCHHHHHHH
Q 004480 306 KFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKV 385 (750)
Q Consensus 306 ~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~g~~~~~~~~~~~li~~~~~~g~~~~a~~~ 385 (750)
.+...+..+...|.+.|++++|..+|+++.+. .+.+..+++.++..+.+.|++++|.+.
T Consensus 105 ----------------~~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~-----~~~~~~~~~~la~~~~~~g~~~~A~~~ 163 (389)
T PRK11788 105 ----------------QRLLALQELGQDYLKAGLLDRAEELFLQLVDE-----GDFAEGALQQLLEIYQQEKDWQKAIDV 163 (389)
T ss_pred ----------------HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHcC-----CcchHHHHHHHHHHHHHhchHHHHHHH
Confidence 01234556666777777777777777776642 234556677777777777777777777
Q ss_pred HHHHHHCCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCChHHHHHHHHHHhh
Q 004480 386 KEDMLSAGVTPNT----ITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTL 461 (750)
Q Consensus 386 ~~~m~~~g~~p~~----~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~ 461 (750)
++.+.+.+..+.. ..+..+...+.+.|++++|...|+++.+.. +.+...+..+...+.+.|++++|.++|+++..
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~ 242 (389)
T PRK11788 164 AERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARALLKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEE 242 (389)
T ss_pred HHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 7777665543321 234556666777777777777777776643 23445666667777777777777777777653
Q ss_pred cccccccCCCCCCchhhhhhhhhhhcccccCCCCccCCCccccccccCCCCccHHHHHHHHHHHHhcHHHHHHHHHHHHH
Q 004480 462 SKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTDYYRVKALMNEMRT 541 (750)
Q Consensus 462 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~a~~l~~~m~~ 541 (750)
.. |+
T Consensus 243 ~~-------------------------------------------------p~--------------------------- 246 (389)
T PRK11788 243 QD-------------------------------------------------PE--------------------------- 246 (389)
T ss_pred HC-------------------------------------------------hh---------------------------
Confidence 21 10
Q ss_pred cCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHH
Q 004480 542 VGLSPNHISWTILIDACGGSGNVEGALQILKIMREDGMSPDVVAYTTAIKVCVRSKRLKQAFSLFEEMKHYQIQPNLVTY 621 (750)
Q Consensus 542 ~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~ 621 (750)
....+++.++.+|.+.|++++|...++++.+. .|+...+..++..+.+.|++++|.++++++.+. .|+..++
T Consensus 247 ----~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~--~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~ 318 (389)
T PRK11788 247 ----YLSEVLPKLMECYQALGDEAEGLEFLRRALEE--YPGADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGF 318 (389)
T ss_pred ----hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHH
Confidence 01223445555555666666666666655553 344444455555566666666666666655542 4555555
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHHcCCCCCHH
Q 004480 622 ITLLRARSRYGSLHEVQQCLAVYQDMWKAGYKANDT 657 (750)
Q Consensus 622 ~~li~~~~~~g~~~~~~~a~~~~~~m~~~g~~p~~~ 657 (750)
+.++..+...+..++..+++.++++|.+++++|++.
T Consensus 319 ~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~ 354 (389)
T PRK11788 319 HRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKPR 354 (389)
T ss_pred HHHHHHhhhccCCccchhHHHHHHHHHHHHHhCCCC
Confidence 555555543211111222455556666555555544
No 15
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.84 E-value=7.4e-18 Score=177.25 Aligned_cols=286 Identities=10% Similarity=0.059 Sum_probs=183.3
Q ss_pred hcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHHcCChHHHHHHHHHHHHhhhcCCCcc--CHHHHHHHHHHHHhccC
Q 004480 301 NAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKL--DVFTYSTIVKVFADAKW 378 (750)
Q Consensus 301 ~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~g~~~~--~~~~~~~li~~~~~~g~ 378 (750)
..++++.|...|.++.+.+ +.+..++..+...+...|++++|..+++.+.. .+...+ ....+..+...|...|+
T Consensus 47 ~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~---~~~~~~~~~~~~~~~La~~~~~~g~ 122 (389)
T PRK11788 47 LNEQPDKAIDLFIEMLKVD-PETVELHLALGNLFRRRGEVDRAIRIHQNLLS---RPDLTREQRLLALQELGQDYLKAGL 122 (389)
T ss_pred hcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhc---CCCCCHHHHHHHHHHHHHHHHHCCC
Confidence 3344555555555555432 23444566666666666666666666666553 110000 12345555666666666
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH----HHHHHHHHHHHHhCChHHHHH
Q 004480 379 WQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNS----QCCNILLQACVEACQFDRAFR 454 (750)
Q Consensus 379 ~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~----~~~~~ll~~~~~~g~~~~A~~ 454 (750)
+++|..+|+++.+.. +++..++..++..+.+.|++++|.+.++.+.+.+..+.. ..+..+...+.+.|++++|..
T Consensus 123 ~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~ 201 (389)
T PRK11788 123 LDRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARA 201 (389)
T ss_pred HHHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHH
Confidence 666666666665542 234555666666666666666666666666554322111 123334444455555555555
Q ss_pred HHHHHhhcccccccCCCCCCchhhhhhhhhhhcccccCCCCccCCCccccccccCCCCccHHHHHHHHHHHHhcHHHHHH
Q 004480 455 LFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTDYYRVKA 534 (750)
Q Consensus 455 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~a~~ 534 (750)
.|++
T Consensus 202 ~~~~---------------------------------------------------------------------------- 205 (389)
T PRK11788 202 LLKK---------------------------------------------------------------------------- 205 (389)
T ss_pred HHHH----------------------------------------------------------------------------
Confidence 5544
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC
Q 004480 535 LMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQILKIMREDGMSPDVVAYTTAIKVCVRSKRLKQAFSLFEEMKHYQI 614 (750)
Q Consensus 535 l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 614 (750)
+.+.. +.+...+..+...|.+.|++++|.++|+++.+.+......+++.++.+|.+.|++++|.+.++++.+.
T Consensus 206 ----al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~-- 278 (389)
T PRK11788 206 ----ALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEE-- 278 (389)
T ss_pred ----HHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--
Confidence 44321 12345677788999999999999999999987532222567899999999999999999999999875
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----hhhhhhhcccc
Q 004480 615 QPNLVTYITLLRARSRYGSLHEVQQCLAVYQDMWKAGYKANDTYLKELIEEWCE----GVIQDKNQNQG 679 (750)
Q Consensus 615 ~p~~~t~~~li~~~~~~g~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~----~~~~~~~~~~~ 679 (750)
.|+...+..+...+.+.|++++ |..+++++.+. .|+..+++.++..++. |...++....+
T Consensus 279 ~p~~~~~~~la~~~~~~g~~~~---A~~~l~~~l~~--~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~ 342 (389)
T PRK11788 279 YPGADLLLALAQLLEEQEGPEA---AQALLREQLRR--HPSLRGFHRLLDYHLAEAEEGRAKESLLLLR 342 (389)
T ss_pred CCCchHHHHHHHHHHHhCCHHH---HHHHHHHHHHh--CcCHHHHHHHHHHhhhccCCccchhHHHHHH
Confidence 6887788999999999999777 66788888765 6899999999988773 35555554433
No 16
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.84 E-value=3.8e-16 Score=172.98 Aligned_cols=433 Identities=11% Similarity=-0.012 Sum_probs=268.1
Q ss_pred hhHHHHHHHHhhcCChHHHHHHHHHHHHhcCChhhHHhhhhHHHHHHHHHhhhhcCchhHHHHHHHHHHhcCCCcccccc
Q 004480 72 DYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLELFD 151 (750)
Q Consensus 72 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~p~~~~~ 151 (750)
..+...+..+.+.|++++|+..|++++...++|. .+.++...|.+.|++++|++.++++++ +.|+..
T Consensus 128 ~~~k~~G~~~~~~~~~~~Ai~~y~~al~~~p~~~---------~~~n~a~~~~~l~~~~~Ai~~~~~al~--l~p~~~-- 194 (615)
T TIGR00990 128 AKLKEKGNKAYRNKDFNKAIKLYSKAIECKPDPV---------YYSNRAACHNALGDWEKVVEDTTAALE--LDPDYS-- 194 (615)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCchH---------HHHHHHHHHHHhCCHHHHHHHHHHHHH--cCCCCH--
Confidence 4566788899999999999999999998844432 234566668899999999999999997 456432
Q ss_pred chhhhhhHHHHHHhhccCcHHHHHHHHHHHHhCCCCCcccccHHHHHHHHHcCCChHHHHHHhhhCCCCcchHHHHHHHH
Q 004480 152 GSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRADILFCNFVREF 231 (750)
Q Consensus 152 ~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~l~~~~ 231 (750)
..+......+...|++++|+..|..+...+ +........++..+........+...+...|.+...+..+...+
T Consensus 195 ----~a~~~~a~a~~~lg~~~eA~~~~~~~~~~~--~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~ 268 (615)
T TIGR00990 195 ----KALNRRANAYDGLGKYADALLDLTASCIID--GFRNEQSAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYL 268 (615)
T ss_pred ----HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHH
Confidence 334444445556899999999887766533 21111111222222221222344444455455444444443332
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCH-HHHHHHHHH---HHhcCCHHHHHHHHHHHHhCC-CCcc-HHHHHHHHHh--hcC
Q 004480 232 GKKRDLVSALRAYDASKKHLSSPNM-YICRTIIDV---CGICGDYMKSRAIYEDLRSQN-VTLN-IYVFNSLMNV--NAH 303 (750)
Q Consensus 232 ~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~li~~---~~~~g~~~~A~~~~~~m~~~g-~~~~-~~~~~~ll~~--~~~ 303 (750)
...+......-++...+ ..+.. ..+..+... ....+++++|.+.|+...+.+ ..|+ ...|+.+-.. ..|
T Consensus 269 -~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g 345 (615)
T TIGR00990 269 -QSFRPKPRPAGLEDSNE--LDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKG 345 (615)
T ss_pred -HHccCCcchhhhhcccc--cccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcC
Confidence 21111122221221111 11110 111111111 123478899999999988764 2233 2333333332 347
Q ss_pred ChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHHcCChHHHHHHHHHHHHhhhcCCCccCHHHHHHHHHHHHhccCHHHHH
Q 004480 304 DLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMAL 383 (750)
Q Consensus 304 ~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~g~~~~~~~~~~~li~~~~~~g~~~~a~ 383 (750)
++++|+..|++..+.. +.+...|..+...+...|++++|...|+++.+. -+.+...|..+...+...|++++|.
T Consensus 346 ~~~eA~~~~~kal~l~-P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~-----~p~~~~~~~~lg~~~~~~g~~~~A~ 419 (615)
T TIGR00990 346 KHLEALADLSKSIELD-PRVTQSYIKRASMNLELGDPDKAEEDFDKALKL-----NSEDPDIYYHRAQLHFIKGEFAQAG 419 (615)
T ss_pred CHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-----CCCCHHHHHHHHHHHHHcCCHHHHH
Confidence 7888888888777653 223557777778888888888888888887763 1345667888888888888888888
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCChHHHHHHHHHHhhcc
Q 004480 384 KVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSK 463 (750)
Q Consensus 384 ~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~ 463 (750)
..|++.+... +.+...+..+...+.+.|++++|+..|++..+.. +.+...|+.+...+...|++++|.+.|++.....
T Consensus 420 ~~~~kal~l~-P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~ 497 (615)
T TIGR00990 420 KDYQKSIDLD-PDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNF-PEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELE 497 (615)
T ss_pred HHHHHHHHcC-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcC
Confidence 8888888764 2356677778888888888888888888887652 3356778888888888888888888887755421
Q ss_pred cccccCCCCCCchhhhhhhhhhhcccccCCCCccCCCccccccccCCCCccHHHHHHHHHHHHhcHHHHHHHHHHHHHcC
Q 004480 464 TQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTDYYRVKALMNEMRTVG 543 (750)
Q Consensus 464 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~a~~l~~~m~~~~ 543 (750)
.. +..++
T Consensus 498 p~------------------------------------------------~~~~~------------------------- 504 (615)
T TIGR00990 498 KE------------------------------------------------TKPMY------------------------- 504 (615)
T ss_pred Cc------------------------------------------------ccccc-------------------------
Confidence 10 00000
Q ss_pred CCCCH-HHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 004480 544 LSPNH-ISWTILIDACGGSGNVEGALQILKIMREDGMSPD-VVAYTTAIKVCVRSKRLKQAFSLFEEMKH 611 (750)
Q Consensus 544 ~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 611 (750)
.+. ..++..+..+...|++++|..++++.... .|+ ...+..+...+.+.|++++|.++|++..+
T Consensus 505 --~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l--~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~ 570 (615)
T TIGR00990 505 --MNVLPLINKALALFQWKQDFIEAENLCEKALII--DPECDIAVATMAQLLLQQGDVDEALKLFERAAE 570 (615)
T ss_pred --ccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 000 01111222233457788888888877664 333 44677777888888888888888887765
No 17
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.83 E-value=9.7e-15 Score=164.45 Aligned_cols=516 Identities=11% Similarity=-0.008 Sum_probs=323.1
Q ss_pred hhhHHHHHHHHhhcCChHHHHHHHHHHHHhcCChhhHHhhhhHHHHHHHHHhhhhcCchhHHHHHHHHHHhcCCCccccc
Q 004480 71 NDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLELF 150 (750)
Q Consensus 71 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~p~~~~ 150 (750)
+..+...+..+...|++++|+..|+++++. +|+.... ...+...|.+.|++++|+..++++.+ ..|+...
T Consensus 44 ~~~~f~~a~~~~~~Gd~~~A~~~l~~Al~~--dP~n~~~------~~~LA~~yl~~g~~~~A~~~~~kAv~--ldP~n~~ 113 (987)
T PRK09782 44 IYPRLDKALKAQKNNDEATAIREFEYIHQQ--VPDNIPL------TLYLAEAYRHFGHDDRARLLLEDQLK--RHPGDAR 113 (987)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHh--CCCCHHH------HHHHHHHHHHCCCHHHHHHHHHHHHh--cCcccHH
Confidence 445555556666679999999999999999 6765322 24567779999999999999999998 4664432
Q ss_pred cchhhhhhHHHHHHhhccCcHHHHHHHHHHHHhCCCCCcccccHHHHHHH--------HHcCCChHHHHHHhhhCCCC--
Q 004480 151 DGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQL--------CVNKPDVNLAIRYACIVPRA-- 220 (750)
Q Consensus 151 ~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~--------~~~~~~~~~A~~~~~~~~~~-- 220 (750)
....+. . .+++++|..+++++.... |.+...+..+... |.+.+...+++. ....+++
T Consensus 114 ---~~~~La----~---i~~~~kA~~~ye~l~~~~--P~n~~~~~~la~~~~~~~~l~y~q~eqAl~AL~-lr~~~~~~~ 180 (987)
T PRK09782 114 ---LERSLA----A---IPVEVKSVTTVEELLAQQ--KACDAVPTLRCRSEVGQNALRLAQLPVARAQLN-DATFAASPE 180 (987)
T ss_pred ---HHHHHH----H---hccChhHHHHHHHHHHhC--CCChhHHHHHHHHhhccchhhhhhHHHHHHHHH-HhhhCCCCC
Confidence 222221 1 388899999999999966 8888888888777 777777778887 5555444
Q ss_pred cc-hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHhCCCCccHHHHHHHH
Q 004480 221 DI-LFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGI-CGDYMKSRAIYEDLRSQNVTLNIYVFNSLM 298 (750)
Q Consensus 221 ~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~-~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll 298 (750)
.. ....+...|.+.|++++|+.++.++.+.++ .+......+..+|.+ .++ +++..+++. .++-|...+..+.
T Consensus 181 ~~vL~L~~~rlY~~l~dw~~Ai~lL~~L~k~~p-l~~~~~~~L~~ay~q~l~~-~~a~al~~~----~lk~d~~l~~ala 254 (987)
T PRK09782 181 GKTLRTDLLQRAIYLKQWSQADTLYNEARQQNT-LSAAERRQWFDVLLAGQLD-DRLLALQSQ----GIFTDPQSRITYA 254 (987)
T ss_pred cHHHHHHHHHHHHHHhCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHhhCH-HHHHHHhch----hcccCHHHHHHHH
Confidence 33 344458999999999999999999999764 345557777778887 466 888777553 2335666666766
Q ss_pred Hhh--cCChHHHHHHHHHHHHcCCC-CCHhhH------------------------------HHHHHHHHHcCChHHHHH
Q 004480 299 NVN--AHDLKFTLEVYKNMQKLGVM-ADMASY------------------------------NILLKACCLAGNTVLAQE 345 (750)
Q Consensus 299 ~~~--~~~~~~a~~~~~~m~~~g~~-~~~~~~------------------------------~~ll~~~~~~g~~~~A~~ 345 (750)
..+ .|+.+.|.+++.++...-.. |...++ -.++..+.+.++++-+++
T Consensus 255 ~~yi~~G~~~~A~~~L~~~~~~~~~~~~~~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 334 (987)
T PRK09782 255 TALAYRGEKARLQHYLIENKPLFTTDAQEKSWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQK 334 (987)
T ss_pred HHHHHCCCHHHHHHHHHhCcccccCCCccHHHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHH
Confidence 654 36777777777666432111 111111 111333444444444433
Q ss_pred HHH-----------------------------HHHHhhhcCCCccCHHHHHHHHHHHHhccCHHHHHHHHHHHHH-CC-C
Q 004480 346 IYG-----------------------------EVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLS-AG-V 394 (750)
Q Consensus 346 ~~~-----------------------------~~~~~~~~g~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~-~g-~ 394 (750)
+.. .+.+ . .+-+......+.....+.|+.++|.++|+.... .+ -
T Consensus 335 ~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~y~---~--~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~ 409 (987)
T PRK09782 335 LLATLPANEMLEERYAVSVATRNKAEALRLARLLYQ---Q--EPANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDA 409 (987)
T ss_pred HhcCCCcchHHHHHHhhccccCchhHHHHHHHHHHh---c--CCCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCccc
Confidence 321 1111 0 011333333333334455555555555555443 11 1
Q ss_pred CC----------------------------------------------------------------CHHHHHHHHHHHHh
Q 004480 395 TP----------------------------------------------------------------NTITWSSLINACAN 410 (750)
Q Consensus 395 ~p----------------------------------------------------------------~~~~~~~li~~~~~ 410 (750)
.+ +...|..+..++..
T Consensus 410 ~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~ 489 (987)
T PRK09782 410 RLSQTLMARLASLLESHPYLATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD 489 (987)
T ss_pred ccCHHHHHHHHHHHHhCCcccchHHHHHhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh
Confidence 12 23344444444443
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCChHHHHHHHHHHhhcccccccCCCCCCchhhhhhhhhhhcccc
Q 004480 411 AGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSI 490 (750)
Q Consensus 411 ~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 490 (750)
++.++|...+.+.... .|+......+..++.+.|++++|...|+++...
T Consensus 490 -~~~~eAi~a~~~Al~~--~Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~---------------------------- 538 (987)
T PRK09782 490 -TLPGVALYAWLQAEQR--QPDAWQHRAVAYQAYQVEDYATALAAWQKISLH---------------------------- 538 (987)
T ss_pred -CCcHHHHHHHHHHHHh--CCchHHHHHHHHHHHHCCCHHHHHHHHHHHhcc----------------------------
Confidence 4445555544444433 233332222223334555555555555543221
Q ss_pred cCCCCccCCCccccccccCCCCccHHHHHHHHHHHH--hcHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHH
Q 004480 491 TNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACC--TDYYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGAL 568 (750)
Q Consensus 491 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~--~~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~ 568 (750)
.|+...+..+...+. ++.++|...++...+.. +++...+..+.......|++++|.
T Consensus 539 ---------------------~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~-P~~~~l~~~La~~l~~~Gr~~eAl 596 (987)
T PRK09782 539 ---------------------DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRG-LGDNALYWWLHAQRYIPGQPELAL 596 (987)
T ss_pred ---------------------CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHhCCCHHHHH
Confidence 233333333333333 47889999999998864 223333434444555679999999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 004480 569 QILKIMREDGMSPDVVAYTTAIKVCVRSKRLKQAFSLFEEMKHYQIQP-NLVTYITLLRARSRYGSLHEVQQCLAVYQDM 647 (750)
Q Consensus 569 ~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~li~~~~~~g~~~~~~~a~~~~~~m 647 (750)
..+++..+. .|+...|..+...+.+.|+.++|.+.|++..+. .| +...++.+..++...|+.++ |+..|++.
T Consensus 597 ~~~~~AL~l--~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l--~Pd~~~a~~nLG~aL~~~G~~ee---Ai~~l~~A 669 (987)
T PRK09782 597 NDLTRSLNI--APSANAYVARATIYRQRHNVPAAVSDLRAALEL--EPNNSNYQAALGYALWDSGDIAQ---SREMLERA 669 (987)
T ss_pred HHHHHHHHh--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHH---HHHHHHHH
Confidence 999999874 678889999999999999999999999999874 56 56777888888999999776 56678877
Q ss_pred HHcCCCCCHHHHHHHHHHHHh-hhhhhhhcccccc
Q 004480 648 WKAGYKANDTYLKELIEEWCE-GVIQDKNQNQGEV 681 (750)
Q Consensus 648 ~~~g~~p~~~~~~~li~~~~~-~~~~~~~~~~~~~ 681 (750)
.+... -+...+..+-..+.. |.+.++....+..
T Consensus 670 L~l~P-~~~~a~~nLA~al~~lGd~~eA~~~l~~A 703 (987)
T PRK09782 670 HKGLP-DDPALIRQLAYVNQRLDDMAATQHYARLV 703 (987)
T ss_pred HHhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 76542 234445555555554 7777777654433
No 18
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.82 E-value=1.2e-15 Score=168.28 Aligned_cols=329 Identities=13% Similarity=0.032 Sum_probs=180.1
Q ss_pred hhHHHHHHHHhhcCChHHHHHHHHHHHHhcCChhhHHhhhhHHHHHHHHHhhhhcCchhHHHHHHHHHHhcCCCcccccc
Q 004480 72 DYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLELFD 151 (750)
Q Consensus 72 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~p~~~~~ 151 (750)
.-....+..+.+.|++++|+.+++..+.. .|.....+. .++......|++++|++.|+++.+ ..|+..
T Consensus 43 ~~~~~~~~~~~~~g~~~~A~~l~~~~l~~--~p~~~~~l~------~l~~~~l~~g~~~~A~~~l~~~l~--~~P~~~-- 110 (656)
T PRK15174 43 QNIILFAIACLRKDETDVGLTLLSDRVLT--AKNGRDLLR------RWVISPLASSQPDAVLQVVNKLLA--VNVCQP-- 110 (656)
T ss_pred cCHHHHHHHHHhcCCcchhHHHhHHHHHh--CCCchhHHH------HHhhhHhhcCCHHHHHHHHHHHHH--hCCCCh--
Confidence 33445667777788888888888888888 444333222 233335678888888888888887 455443
Q ss_pred chhhhhhHHHHHHhhccCcHHHHHHHHHHHHhCCCCCcccccHHHHHHHHHcCCChHHHHHHhhhC----CCCcchHHHH
Q 004480 152 GSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIV----PRADILFCNF 227 (750)
Q Consensus 152 ~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~----~~~~~~~~~l 227 (750)
.. +......+...|++++|+..+++++... |++...+..++..+...|++++|...+..+ |.+...+..+
T Consensus 111 -~a---~~~la~~l~~~g~~~~Ai~~l~~Al~l~--P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~~~a~~~~ 184 (656)
T PRK15174 111 -ED---VLLVASVLLKSKQYATVADLAEQAWLAF--SGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPPRGDMIATC 184 (656)
T ss_pred -HH---HHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 12 2222233444788888888888877743 666666666666666667766666655432 3333333333
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCccHHHHHHHHHhhcCChHH
Q 004480 228 VREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKF 307 (750)
Q Consensus 228 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~ 307 (750)
. .+.+.|++++|...++.+.+....++...+..+...+.+.|++++|+..|++..+..
T Consensus 185 ~-~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~--------------------- 242 (656)
T PRK15174 185 L-SFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARG--------------------- 242 (656)
T ss_pred H-HHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC---------------------
Confidence 2 355666666666666666554332333334444555666666666666666665442
Q ss_pred HHHHHHHHHHcCCCCCHhhHHHHHHHHHHcCChHH----HHHHHHHHHHhhhcCCCccCHHHHHHHHHHHHhccCHHHHH
Q 004480 308 TLEVYKNMQKLGVMADMASYNILLKACCLAGNTVL----AQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMAL 383 (750)
Q Consensus 308 a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~----A~~~~~~~~~~~~~g~~~~~~~~~~~li~~~~~~g~~~~a~ 383 (750)
+.+...+..+...+...|++++ |...|+++... -+.+...+..+...+...|++++|.
T Consensus 243 -------------p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l-----~P~~~~a~~~lg~~l~~~g~~~eA~ 304 (656)
T PRK15174 243 -------------LDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQF-----NSDNVRIVTLYADALIRTGQNEKAI 304 (656)
T ss_pred -------------CCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhh-----CCCCHHHHHHHHHHHHHCCCHHHHH
Confidence 2234444445555555555543 45555554441 1223344555555555555555555
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHHhCChHHHHHHHHHHhh
Q 004480 384 KVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQ-CCNILLQACVEACQFDRAFRLFRSWTL 461 (750)
Q Consensus 384 ~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~-~~~~ll~~~~~~g~~~~A~~~~~~~~~ 461 (750)
..+++....... +...+..+...+.+.|++++|...|+++... .|+.. .+..+..++...|+.++|...|++...
T Consensus 305 ~~l~~al~l~P~-~~~a~~~La~~l~~~G~~~eA~~~l~~al~~--~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~ 380 (656)
T PRK15174 305 PLLQQSLATHPD-LPYVRAMYARALRQVGQYTAASDEFVQLARE--KGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQ 380 (656)
T ss_pred HHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CccchHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 555555543211 2334444555555555555555555555443 22221 222233444555555555555555443
No 19
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.81 E-value=1.3e-15 Score=167.78 Aligned_cols=286 Identities=10% Similarity=-0.012 Sum_probs=219.6
Q ss_pred hccCcHHHHHHHHHHHHhCCCCCcccccHHHHHHHHHcCCChHHHHHHhhhC----CCCcchHHHHHHHHHhcCCHHHHH
Q 004480 166 LDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIV----PRADILFCNFVREFGKKRDLVSAL 241 (750)
Q Consensus 166 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~----~~~~~~~~~l~~~~~~~g~~~~A~ 241 (750)
.+.|++++|+.+++..+... |.....+..++......|++++|+..++.+ |.+..++..+...+.+.|++++|+
T Consensus 53 ~~~g~~~~A~~l~~~~l~~~--p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~~~~a~~~la~~l~~~g~~~~Ai 130 (656)
T PRK15174 53 LRKDETDVGLTLLSDRVLTA--KNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVNVCQPEDVLLVASVLLKSKQYATVA 130 (656)
T ss_pred HhcCCcchhHHHhHHHHHhC--CCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHH
Confidence 33899999999999988855 777778888888888899999999888774 777788888999999999999999
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCccHHHHHHHHHhhcCChHHHHHHHHHHHHcCCC
Q 004480 242 RAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKFTLEVYKNMQKLGVM 321 (750)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~a~~~~~~m~~~g~~ 321 (750)
..|+++.+..+ .+...+..+...+...|++++|...++.+......+....+........|++++|...++.+.+....
T Consensus 131 ~~l~~Al~l~P-~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~~~a~~~~~~l~~~g~~~eA~~~~~~~l~~~~~ 209 (656)
T PRK15174 131 DLAEQAWLAFS-GNSQIFALHLRTLVLMDKELQAISLARTQAQEVPPRGDMIATCLSFLNKSRLPEDHDLARALLPFFAL 209 (656)
T ss_pred HHHHHHHHhCC-CcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Confidence 99999987422 35678888889999999999999999988765433322222222223447888888888888765433
Q ss_pred CCHhhHHHHHHHHHHcCChHHHHHHHHHHHHhhhcCCCccCHHHHHHHHHHHHhccCHHH----HHHHHHHHHHCCCCCC
Q 004480 322 ADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQM----ALKVKEDMLSAGVTPN 397 (750)
Q Consensus 322 ~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~g~~~~~~~~~~~li~~~~~~g~~~~----a~~~~~~m~~~g~~p~ 397 (750)
++...+..+...+...|++++|...++..... .+.+...+..+...+...|++++ |...|++...... .+
T Consensus 210 ~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~-----~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P-~~ 283 (656)
T PRK15174 210 ERQESAGLAVDTLCAVGKYQEAIQTGESALAR-----GLDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNS-DN 283 (656)
T ss_pred cchhHHHHHHHHHHHCCCHHHHHHHHHHHHhc-----CCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCC-CC
Confidence 44445555667788889999999988888763 23456677788888888888885 7888888887642 35
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCChHHHHHHHHHHhh
Q 004480 398 TITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTL 461 (750)
Q Consensus 398 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~ 461 (750)
...+..+...+.+.|++++|...+++..+.. +.+...+..+..++.+.|++++|.+.|+.+..
T Consensus 284 ~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~-P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~ 346 (656)
T PRK15174 284 VRIVTLYADALIRTGQNEKAIPLLQQSLATH-PDLPYVRAMYARALRQVGQYTAASDEFVQLAR 346 (656)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 6788888888888999999999998888763 33456677777888888898888888877654
No 20
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.80 E-value=2.8e-15 Score=166.00 Aligned_cols=418 Identities=11% Similarity=-0.015 Sum_probs=248.7
Q ss_pred HHhhhhcCchhHHHHHHHHHHhcCCCccccccchhhhhhHHHHHHhhccCcHHHHHHHHHHHHhCCCCCcccccHHHHHH
Q 004480 120 IVKSIREGRIDCVVGVLKKLNELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQ 199 (750)
Q Consensus 120 ~~~~~~~g~~~~A~~~l~~~~~~~~~p~~~~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~ 199 (750)
+..+.+.|++++|+..|+++++ +.|+.. . +.+.+..+...|++++|++.+++.++.. |+....+..++.
T Consensus 134 G~~~~~~~~~~~Ai~~y~~al~--~~p~~~----~---~~n~a~~~~~l~~~~~Ai~~~~~al~l~--p~~~~a~~~~a~ 202 (615)
T TIGR00990 134 GNKAYRNKDFNKAIKLYSKAIE--CKPDPV----Y---YSNRAACHNALGDWEKVVEDTTAALELD--PDYSKALNRRAN 202 (615)
T ss_pred HHHHHHcCCHHHHHHHHHHHHh--cCCchH----H---HHHHHHHHHHhCCHHHHHHHHHHHHHcC--CCCHHHHHHHHH
Confidence 3447799999999999999997 456432 2 3344444555899999999999998855 888888888888
Q ss_pred HHHcCCChHHHHHHhhhC---CCCc-chHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 004480 200 LCVNKPDVNLAIRYACIV---PRAD-ILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKS 275 (750)
Q Consensus 200 ~~~~~~~~~~A~~~~~~~---~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 275 (750)
++...|++++|+..+... ++.. .....++..+.. ..+........+... ++...+..+.. +.........
T Consensus 203 a~~~lg~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~----~~a~~~~~~~l~~~~-~~~~~~~~~~~-~~~~~~~~~~ 276 (615)
T TIGR00990 203 AYDGLGKYADALLDLTASCIIDGFRNEQSAQAVERLLK----KFAESKAKEILETKP-ENLPSVTFVGN-YLQSFRPKPR 276 (615)
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHH----HHHHHHHHHHHhcCC-CCCCCHHHHHH-HHHHccCCcc
Confidence 899999998888766543 1111 111111111111 122222222222211 11122222222 1111111111
Q ss_pred HHHHHHHHhCCCCcc-----HHHHHHHHHh-hcCChHHHHHHHHHHHHcC-C-CCCHhhHHHHHHHHHHcCChHHHHHHH
Q 004480 276 RAIYEDLRSQNVTLN-----IYVFNSLMNV-NAHDLKFTLEVYKNMQKLG-V-MADMASYNILLKACCLAGNTVLAQEIY 347 (750)
Q Consensus 276 ~~~~~~m~~~g~~~~-----~~~~~~ll~~-~~~~~~~a~~~~~~m~~~g-~-~~~~~~~~~ll~~~~~~g~~~~A~~~~ 347 (750)
..-+....+. .++ ...+...+.. ..+++++|.+.|+...+.+ . +.+...++.+...+...|++++|...|
T Consensus 277 ~~~~~~~~~~--~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~ 354 (615)
T TIGR00990 277 PAGLEDSNEL--DEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADL 354 (615)
T ss_pred hhhhhccccc--ccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 1111111110 111 0001111111 1246677777777776653 1 223445666666666777777777777
Q ss_pred HHHHHhhhcCCCccC-HHHHHHHHHHHHhccCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004480 348 GEVKHLEAKGVLKLD-VFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQ 426 (750)
Q Consensus 348 ~~~~~~~~~g~~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 426 (750)
+.... ..|+ ...|..+...+...|++++|...|++.++.. +.+...|..+...+...|++++|...|++..+
T Consensus 355 ~kal~------l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~ 427 (615)
T TIGR00990 355 SKSIE------LDPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSID 427 (615)
T ss_pred HHHHH------cCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 77665 2333 4456666666777777777777777776653 22456666677777777777777777777766
Q ss_pred cCCCCCHHHHHHHHHHHHHhCChHHHHHHHHHHhhcccccccCCCCCCchhhhhhhhhhhcccccCCCCccCCCcccccc
Q 004480 427 AGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFD 506 (750)
Q Consensus 427 ~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 506 (750)
.. +.+...+..+..++.+.|++++|...|++..
T Consensus 428 l~-P~~~~~~~~la~~~~~~g~~~eA~~~~~~al---------------------------------------------- 460 (615)
T TIGR00990 428 LD-PDFIFSHIQLGVTQYKEGSIASSMATFRRCK---------------------------------------------- 460 (615)
T ss_pred cC-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHH----------------------------------------------
Confidence 53 2344555556666666677776666665543
Q ss_pred ccCCCCccHHHHHHHHHHHHhcHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCH---
Q 004480 507 KRFSFKPTTTTYNILMKACCTDYYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQILKIMREDGMSPDV--- 583 (750)
Q Consensus 507 ~~~~~~p~~~~~~~li~~~~~~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~--- 583 (750)
+. .+.+...|+.+...+...|++++|+..|++..+..-..+.
T Consensus 461 ----------------------------------~~-~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~ 505 (615)
T TIGR00990 461 ----------------------------------KN-FPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYM 505 (615)
T ss_pred ----------------------------------Hh-CCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccc
Confidence 21 1224567888888999999999999999998874211111
Q ss_pred ---HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHc
Q 004480 584 ---VAYTTAIKVCVRSKRLKQAFSLFEEMKHYQIQPN-LVTYITLLRARSRYGSLHEVQQCLAVYQDMWKA 650 (750)
Q Consensus 584 ---~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~li~~~~~~g~~~~~~~a~~~~~~m~~~ 650 (750)
..++..+..+...|++++|.+++++..+. .|+ ...+..+...+.+.|+.++ |+..|++..+.
T Consensus 506 ~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l--~p~~~~a~~~la~~~~~~g~~~e---Ai~~~e~A~~l 571 (615)
T TIGR00990 506 NVLPLINKALALFQWKQDFIEAENLCEKALII--DPECDIAVATMAQLLLQQGDVDE---ALKLFERAAEL 571 (615)
T ss_pred cHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHccCHHH---HHHHHHHHHHH
Confidence 12222233344579999999999998874 454 5578899999999999877 56677776554
No 21
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.79 E-value=4.1e-14 Score=148.77 Aligned_cols=565 Identities=13% Similarity=0.048 Sum_probs=343.7
Q ss_pred hhhccccCCcchhhhHHHHHHHHhhcCChHHHHHHHHHHHHhcCChhhH-HhhhhHHHHHHHHHhhhhcCchhHHHHHHH
Q 004480 59 LLSTVRRDLSSRNDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKF-ASMLSLEMVASGIVKSIREGRIDCVVGVLK 137 (750)
Q Consensus 59 ~~~~l~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~-~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~ 137 (750)
|...++..|++ ...+.--+...-..|+|-.|+.+|..++...+ ... +..+..+.+ +++.|+.+.|+..|+
T Consensus 153 F~~Vl~~sp~N-il~LlGkA~i~ynkkdY~~al~yyk~al~inp--~~~aD~rIgig~C------f~kl~~~~~a~~a~~ 223 (1018)
T KOG2002|consen 153 FHFVLKQSPDN-ILALLGKARIAYNKKDYRGALKYYKKALRINP--ACKADVRIGIGHC------FWKLGMSEKALLAFE 223 (1018)
T ss_pred HHHHHhhCCcc-hHHHHHHHHHHhccccHHHHHHHHHHHHhcCc--ccCCCccchhhhH------HHhccchhhHHHHHH
Confidence 44447777888 55554555555667899999999999887732 221 111223333 678999999999999
Q ss_pred HHHhcCCCccccccchhhhhhHHHHHHhhccCcHHHHHHHHHHHHhCCCCCcccccHHHHHHHHHcCCChHHHHHHhhhC
Q 004480 138 KLNELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIV 217 (750)
Q Consensus 138 ~~~~~~~~p~~~~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 217 (750)
++++ +.|... ..+-.|.-.-...-+...+..++..+.+.-.. .+.++...+.|..-+...+++..+..+...+
T Consensus 224 ralq--Ldp~~v---~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~--n~~nP~~l~~LAn~fyfK~dy~~v~~la~~a 296 (1018)
T KOG2002|consen 224 RALQ--LDPTCV---SALVALGEVDLNFNDSDSYKKGVQLLQRAYKE--NNENPVALNHLANHFYFKKDYERVWHLAEHA 296 (1018)
T ss_pred HHHh--cChhhH---HHHHHHHHHHHHccchHHHHHHHHHHHHHHhh--cCCCcHHHHHHHHHHhhcccHHHHHHHHHHH
Confidence 9987 566332 11111111111222245566677777665553 3777888888888888888888888876553
Q ss_pred CC-------CcchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcc
Q 004480 218 PR-------ADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLN 290 (750)
Q Consensus 218 ~~-------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~ 290 (750)
-. -...|..+..+|-..|++++|...|.+..+....--+..+--+.+.+.+.|+++.+...|+...+. .||
T Consensus 297 i~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~--~p~ 374 (1018)
T KOG2002|consen 297 IKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQ--LPN 374 (1018)
T ss_pred HHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHh--Ccc
Confidence 21 124577788888888999999888887776432111345556778888888898888888888766 344
Q ss_pred HH-HHHHHHHhhcC------ChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHHcCChHHHHHHHHHHHH-hhhcCCCccC
Q 004480 291 IY-VFNSLMNVNAH------DLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKH-LEAKGVLKLD 362 (750)
Q Consensus 291 ~~-~~~~ll~~~~~------~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~-~~~~g~~~~~ 362 (750)
.. |...+-..+++ ..+.|..++....+.- +.|...|-.+...+... +...++..|..+.. +...+ -.+.
T Consensus 375 ~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~-~~d~~a~l~laql~e~~-d~~~sL~~~~~A~d~L~~~~-~~ip 451 (1018)
T KOG2002|consen 375 NYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQT-PVDSEAWLELAQLLEQT-DPWASLDAYGNALDILESKG-KQIP 451 (1018)
T ss_pred hHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcc-cccHHHHHHHHHHHHhc-ChHHHHHHHHHHHHHHHHcC-CCCC
Confidence 43 33333333433 2355666666655543 44566666665555444 44444666666552 33344 3467
Q ss_pred HHHHHHHHHHHHhccCHHHHHHHHHHHHHC---CCCCCH------HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH
Q 004480 363 VFTYSTIVKVFADAKWWQMALKVKEDMLSA---GVTPNT------ITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNS 433 (750)
Q Consensus 363 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~---g~~p~~------~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~ 433 (750)
....|.+.......|+++.|...|+..... ...+|. .+--.+...+-..++++.|.+.|..+.+. .|.-
T Consensus 452 ~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilke--hp~Y 529 (1018)
T KOG2002|consen 452 PEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKE--HPGY 529 (1018)
T ss_pred HHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHH--Cchh
Confidence 778888888888888888888888877654 112222 22333555666677888888888888775 3443
Q ss_pred HH-HHHHHHHHHHhCChHHHHHHHHHHhhcccccccCCCCCCchhhhhhhhhhhcccccCCCCccCCCccccccccCCCC
Q 004480 434 QC-CNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFK 512 (750)
Q Consensus 434 ~~-~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 512 (750)
+. |--+....-..+...+|...++.........+....+.|... +.... ... ....+.....+-...
T Consensus 530 Id~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~np~arsl~G~~~----l~k~~-~~~-------a~k~f~~i~~~~~~~ 597 (1018)
T KOG2002|consen 530 IDAYLRLGCMARDKNNLYEASLLLKDALNIDSSNPNARSLLGNLH----LKKSE-WKP-------AKKKFETILKKTSTK 597 (1018)
T ss_pred HHHHHHhhHHHHhccCcHHHHHHHHHHHhcccCCcHHHHHHHHHH----Hhhhh-hcc-------cccHHHHHHhhhccC
Confidence 32 322322222346667777777766543221110000000000 00000 000 000000011111123
Q ss_pred ccHHHHHHHHHHHHh--------------cHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCC
Q 004480 513 PTTTTYNILMKACCT--------------DYYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQILKIMREDG 578 (750)
Q Consensus 513 p~~~~~~~li~~~~~--------------~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 578 (750)
+|.++.-+|-+.|.. ..++|.++|.+..+.. +-|.+.-|-+.-.++..|++.+|..+|.+..+..
T Consensus 598 ~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~d-pkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~ 676 (1018)
T KOG2002|consen 598 TDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRND-PKNMYAANGIGIVLAEKGRFSEARDIFSQVREAT 676 (1018)
T ss_pred CchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcC-cchhhhccchhhhhhhccCchHHHHHHHHHHHHH
Confidence 566655555443321 3568889999888863 2367777888888999999999999999998864
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHcCCCCCHH
Q 004480 579 MSPDVVAYTTAIKVCVRSKRLKQAFSLFEEMKH-YQIQPNLVTYITLLRARSRYGSLHEVQQCLAVYQDMWKAGYKANDT 657 (750)
Q Consensus 579 ~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-~g~~p~~~t~~~li~~~~~~g~~~~~~~a~~~~~~m~~~g~~p~~~ 657 (750)
. -+..+|-.+..+|..+|++..|+++|+...+ ..-.-+..+.+.|-+++.+.|.+.++.++ ........+.-...
T Consensus 677 ~-~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~---ll~a~~~~p~~~~v 752 (1018)
T KOG2002|consen 677 S-DFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEA---LLKARHLAPSNTSV 752 (1018)
T ss_pred h-hCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHH---HHHHHHhCCccchH
Confidence 3 2456788888999999999999999998664 33345788899999999999987775443 33333333322344
Q ss_pred HHHHHH
Q 004480 658 YLKELI 663 (750)
Q Consensus 658 ~~~~li 663 (750)
.||..+
T Consensus 753 ~FN~a~ 758 (1018)
T KOG2002|consen 753 KFNLAL 758 (1018)
T ss_pred HhHHHH
Confidence 455443
No 22
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.77 E-value=9.6e-14 Score=146.07 Aligned_cols=537 Identities=13% Similarity=0.087 Sum_probs=356.0
Q ss_pred cccCCcchhhhHHHHHHHHhhcCChHHHHHHHHHHHHhcCChhhHHhhhhHHHHHHHHHhhhhcCchhHHHHHHHHHHhc
Q 004480 63 VRRDLSSRNDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNEL 142 (750)
Q Consensus 63 l~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~ 142 (750)
+...|...+...-.+.-.+.+.|+.+.|+..|+.+++. +|.....++.++.+ --.+.....+..+...+..+...
T Consensus 191 l~inp~~~aD~rIgig~Cf~kl~~~~~a~~a~~ralqL--dp~~v~alv~L~~~---~l~~~d~~s~~~~~~ll~~ay~~ 265 (1018)
T KOG2002|consen 191 LRINPACKADVRIGIGHCFWKLGMSEKALLAFERALQL--DPTCVSALVALGEV---DLNFNDSDSYKKGVQLLQRAYKE 265 (1018)
T ss_pred HhcCcccCCCccchhhhHHHhccchhhHHHHHHHHHhc--ChhhHHHHHHHHHH---HHHccchHHHHHHHHHHHHHHhh
Confidence 56666554555556667888999999999999999999 77766665554433 22233456677888888888764
Q ss_pred CCCccccccchhhhhhHHHHHHhhccCcHHHHHHHHHHHHhCCCC-CcccccHHHHHHHHHcCCChHHHHHHhhhC----
Q 004480 143 GVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLP-VKELDEEFRIVQLCVNKPDVNLAIRYACIV---- 217 (750)
Q Consensus 143 ~~~p~~~~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~---- 217 (750)
.|+.. ..++.|.+ .+...|++..++.+...+...... +.-...+..+++.+-.+|++++|..+|...
T Consensus 266 --n~~nP---~~l~~LAn---~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~ 337 (1018)
T KOG2002|consen 266 --NNENP---VALNHLAN---HFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKAD 337 (1018)
T ss_pred --cCCCc---HHHHHHHH---HHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccC
Confidence 23221 34444444 344489999999999888765421 233445788999999999999999998663
Q ss_pred CCC-cchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC----CHHHHHHHHHHHHhCCCCccHH
Q 004480 218 PRA-DILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICG----DYMKSRAIYEDLRSQNVTLNIY 292 (750)
Q Consensus 218 ~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g----~~~~A~~~~~~m~~~g~~~~~~ 292 (750)
+++ ...+.-|...|.+.|+++.+...|+.+.+.. +.+..+...+...|...+ ..+.|..++....+.- +.|..
T Consensus 338 ~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~-p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~-~~d~~ 415 (1018)
T KOG2002|consen 338 NDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQL-PNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQT-PVDSE 415 (1018)
T ss_pred CCCccccccchhHHHHHhchHHHHHHHHHHHHHhC-cchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcc-cccHH
Confidence 333 2445568999999999999999999998842 235667778888787775 4566777776666543 44566
Q ss_pred HHHHHHHhhc-CChHHHHHHHHH----HHHcCCCCCHhhHHHHHHHHHHcCChHHHHHHHHHHHHhhhcCCCccCH----
Q 004480 293 VFNSLMNVNA-HDLKFTLEVYKN----MQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDV---- 363 (750)
Q Consensus 293 ~~~~ll~~~~-~~~~~a~~~~~~----m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~g~~~~~~---- 363 (750)
.|-.+-..+. ++...++..|.. |...+-.+-+...|.+...+...|+++.|...|+........ ...+|.
T Consensus 416 a~l~laql~e~~d~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~-~~n~de~~~~ 494 (1018)
T KOG2002|consen 416 AWLELAQLLEQTDPWASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLE-VANKDEGKST 494 (1018)
T ss_pred HHHHHHHHHHhcChHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhh-hcCccccccc
Confidence 6766666543 455555555543 445566688899999999999999999999999988763110 012222
Q ss_pred --HHHHHHHHHHHhccCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 004480 364 --FTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPN-TITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILL 440 (750)
Q Consensus 364 --~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll 440 (750)
.+--.+...+-..++.+.|.+.|..+... .|. +..|--++-.....+...+|...+.+..+.. ..++..++.+-
T Consensus 495 ~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilke--hp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d-~~np~arsl~G 571 (1018)
T KOG2002|consen 495 NLTLKYNLARLLEELHDTEVAEEMYKSILKE--HPGYIDAYLRLGCMARDKNNLYEASLLLKDALNID-SSNPNARSLLG 571 (1018)
T ss_pred hhHHHHHHHHHHHhhhhhhHHHHHHHHHHHH--CchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcc-cCCcHHHHHHH
Confidence 23334555666778999999999999986 333 3334444433334577889999999988764 55667777777
Q ss_pred HHHHHhCChHHHHHHHHHHhhcccccccCCC--CCCchhhhhhhhhhhcccccCCCCccCCCccccccccCC----C-Cc
Q 004480 441 QACVEACQFDRAFRLFRSWTLSKTQVALGED--YDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFS----F-KP 513 (750)
Q Consensus 441 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~-~p 513 (750)
..+.+...+..|.+-|......-...+.... ..|. ..+..+..... .+ .....++..++...+ . +.
T Consensus 572 ~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN-~~~~~l~~~~r-----n~-ek~kk~~~KAlq~y~kvL~~dpk 644 (1018)
T KOG2002|consen 572 NLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGN-VYIQALHNPSR-----NP-EKEKKHQEKALQLYGKVLRNDPK 644 (1018)
T ss_pred HHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhH-HHHHHhccccc-----Ch-HHHHHHHHHHHHHHHHHHhcCcc
Confidence 7888888888888866665543222111000 0011 00000000000 00 001112222222222 1 22
Q ss_pred cHHHHHH--HHHHHHhcHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHC-CCCCCHHHHHHHH
Q 004480 514 TTTTYNI--LMKACCTDYYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQILKIMRED-GMSPDVVAYTTAI 590 (750)
Q Consensus 514 ~~~~~~~--li~~~~~~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~p~~~~~~~li 590 (750)
|...-|. ++-+.++++..|..+|....+... -+..+|-.+.++|..+|++..|+++|+...+. .-.-+....+.|.
T Consensus 645 N~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~-~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~La 723 (1018)
T KOG2002|consen 645 NMYAANGIGIVLAEKGRFSEARDIFSQVREATS-DFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLA 723 (1018)
T ss_pred hhhhccchhhhhhhccCchHHHHHHHHHHHHHh-hCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHH
Confidence 3333332 344556789999999999998643 24567888999999999999999999886654 4455788899999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 004480 591 KVCVRSKRLKQAFSLFEEMKHYQIQPNLVTYITLLR 626 (750)
Q Consensus 591 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~ 626 (750)
.++.+.|++.+|.+.+.........-..+.||..+-
T Consensus 724 ra~y~~~~~~eak~~ll~a~~~~p~~~~v~FN~a~v 759 (1018)
T KOG2002|consen 724 RAWYEAGKLQEAKEALLKARHLAPSNTSVKFNLALV 759 (1018)
T ss_pred HHHHHhhhHHHHHHHHHHHHHhCCccchHHhHHHHH
Confidence 999999999999999988876433333455555443
No 23
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.77 E-value=7.2e-14 Score=133.38 Aligned_cols=320 Identities=14% Similarity=0.197 Sum_probs=234.9
Q ss_pred hhhcCchhHHHHHHHHHHhcCCCccccccchhhhhhHHHHHHhhccCcHHHH-HHHHHHHHhCCCCCcccccHHHHHHHH
Q 004480 123 SIREGRIDCVVGVLKKLNELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMF-VGLMEVLEEFRLPVKELDEEFRIVQLC 201 (750)
Q Consensus 123 ~~~~g~~~~A~~~l~~~~~~~~~p~~~~~~~~~~~l~~~~~~~~~~g~~~~A-~~~~~~~~~~~~~~~~~~~~~~l~~~~ 201 (750)
....|...++.-+|++|.+.|+.-+...... +.+..+.+ ...++.-| .+.|-.|...| .+....|
T Consensus 125 mIS~~EvKDs~ilY~~m~~e~~~vS~kvq~~----L~~LV~~~-Ns~~~~~~E~~~Fv~~~~~~--E~S~~sW------- 190 (625)
T KOG4422|consen 125 MISSREVKDSCILYERMRSENVDVSEKVQLE----LFRLVTYY-NSSNVPFAEWEEFVGMRNFG--EDSTSSW------- 190 (625)
T ss_pred HHhhcccchhHHHHHHHHhcCCCCCHHHHHH----HHHHHHhh-cCCCCcchhHHHHhhccccc--ccccccc-------
Confidence 3468899999999999998876655442222 23322222 22222211 12233333333 2222223
Q ss_pred HcCCChHHHHHHhhhCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 004480 202 VNKPDVNLAIRYACIVPRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYED 281 (750)
Q Consensus 202 ~~~~~~~~A~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 281 (750)
+.|. .|.-+|+..|..+.++..+|.++|+--..+.|..++++......+.+..+||.+|.+-.-..+ .+++.+
T Consensus 191 -K~G~--vAdL~~E~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~~----K~Lv~E 263 (625)
T KOG4422|consen 191 -KSGA--VADLLFETLPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSVG----KKLVAE 263 (625)
T ss_pred -cccc--HHHHHHhhcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhcc----HHHHHH
Confidence 2333 455788999999999999999999999999999999999887788899999999986544433 689999
Q ss_pred HHhCCCCccHHHHHHHHHhhc--CChH----HHHHHHHHHHHcCCCCCHhhHHHHHHHHHHcCChHH-HHHHHHHHH-Hh
Q 004480 282 LRSQNVTLNIYVFNSLMNVNA--HDLK----FTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVL-AQEIYGEVK-HL 353 (750)
Q Consensus 282 m~~~g~~~~~~~~~~ll~~~~--~~~~----~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~-A~~~~~~~~-~~ 353 (750)
|.+..+.||..|||+++.+.+ |+++ .|.+++.+|++-|+.|...+|..+|..+++.++..+ |..+..++. .+
T Consensus 264 Misqkm~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~l 343 (625)
T KOG4422|consen 264 MISQKMTPNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSL 343 (625)
T ss_pred HHHhhcCCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhh
Confidence 999999999999999999754 5554 468899999999999999999999999999988755 333433333 22
Q ss_pred hhcC---CCccCHHHHHHHHHHHHhccCHHHHHHHHHHHHHCC----CCCC---HHHHHHHHHHHHhcCCHHHHHHHHHH
Q 004480 354 EAKG---VLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAG----VTPN---TITWSSLINACANAGLVEQAMHLFEE 423 (750)
Q Consensus 354 ~~~g---~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g----~~p~---~~~~~~li~~~~~~g~~~~a~~~~~~ 423 (750)
.++. .-+.|..-|...+..|.+..+.+-|.++..-+.... +.|+ ..-|..+....|+....+.....|+.
T Consensus 344 tGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~ 423 (625)
T KOG4422|consen 344 TGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYED 423 (625)
T ss_pred ccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1111 112345567778888889999999999887665321 2333 23467788888999999999999999
Q ss_pred HHHcCCCCCHHHHHHHHHHHHHhCChHHHHHHHHHHhhcc
Q 004480 424 MLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSK 463 (750)
Q Consensus 424 m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~ 463 (750)
|.-+-+-|+..+...++++..-.|.++-.-+++..+...|
T Consensus 424 lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~g 463 (625)
T KOG4422|consen 424 LVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYG 463 (625)
T ss_pred hccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhh
Confidence 9988888999999999999999999998888888776554
No 24
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.76 E-value=2.8e-14 Score=160.98 Aligned_cols=416 Identities=13% Similarity=0.032 Sum_probs=227.9
Q ss_pred hhhHHHHHHHHhhcCChHHHHHHHHHHHHhcCChhhHHhhhhHHHHHHHHHhhhhcCchhHHHHHHHHHHhcCCCccccc
Q 004480 71 NDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLELF 150 (750)
Q Consensus 71 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~p~~~~ 150 (750)
+......+....-.|+.++|+.++.+..... |.. ...+..+...+...|++++|.+.|+++++ ..|+..
T Consensus 15 ~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~--~~~------a~~~~~lA~~~~~~g~~~~A~~~~~~al~--~~P~~~- 83 (765)
T PRK10049 15 NNQIADWLQIALWAGQDAEVITVYNRYRVHM--QLP------ARGYAAVAVAYRNLKQWQNSLTLWQKALS--LEPQND- 83 (765)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCH-
Confidence 5555566777777888888888888877642 221 12223444557788888888888888887 344332
Q ss_pred cchhhhhhHHHHHHhhccCcHHHHHHHHHHHHhCCCCCcccccHHHHHHHHHcCCChHHHHHHhhhC----CCCcchHHH
Q 004480 151 DGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIV----PRADILFCN 226 (750)
Q Consensus 151 ~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~----~~~~~~~~~ 226 (750)
.. .......+...|++++|+..+++++... |++.. +..++.++...|++++|+..++.+ |.+..++..
T Consensus 84 --~a---~~~la~~l~~~g~~~eA~~~l~~~l~~~--P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~ 155 (765)
T PRK10049 84 --DY---QRGLILTLADAGQYDEALVKAKQLVSGA--PDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQTQQYPTE 155 (765)
T ss_pred --HH---HHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 11 1222233445788888888888887754 66655 666666666666666666555442 444445555
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCH------HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCccHHHHHHHHHh
Q 004480 227 FVREFGKKRDLVSALRAYDASKKHLSSPNM------YICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNV 300 (750)
Q Consensus 227 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~------~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~ 300 (750)
+...+...+..+.|+..++.... .|+. .....++......+. .
T Consensus 156 la~~l~~~~~~e~Al~~l~~~~~---~p~~~~~l~~~~~~~~~r~~~~~~~----------------------------~ 204 (765)
T PRK10049 156 YVQALRNNRLSAPALGAIDDANL---TPAEKRDLEADAAAELVRLSFMPTR----------------------------S 204 (765)
T ss_pred HHHHHHHCCChHHHHHHHHhCCC---CHHHHHHHHHHHHHHHHHhhccccc----------------------------C
Confidence 55555555566666655554432 1220 000111111100000 0
Q ss_pred hcCCh---HHHHHHHHHHHHc-CCCCCHh-hH----HHHHHHHHHcCChHHHHHHHHHHHHhhhcCCCccCHHHHHHHHH
Q 004480 301 NAHDL---KFTLEVYKNMQKL-GVMADMA-SY----NILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVK 371 (750)
Q Consensus 301 ~~~~~---~~a~~~~~~m~~~-g~~~~~~-~~----~~ll~~~~~~g~~~~A~~~~~~~~~~~~~g~~~~~~~~~~~li~ 371 (750)
..+++ +.|++.++.+.+. ...|+.. .+ ...+..+...|++++|...|+.+.+. +...|+. ....+..
T Consensus 205 ~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~---~~~~P~~-a~~~la~ 280 (765)
T PRK10049 205 EKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAE---GQIIPPW-AQRWVAS 280 (765)
T ss_pred hhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhcc---CCCCCHH-HHHHHHH
Confidence 00112 4455555555543 1122211 11 11123445567777777777776651 1101221 1122355
Q ss_pred HHHhccCHHHHHHHHHHHHHCCCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-----------CCCC---HH
Q 004480 372 VFADAKWWQMALKVKEDMLSAGVTP---NTITWSSLINACANAGLVEQAMHLFEEMLQAG-----------CEPN---SQ 434 (750)
Q Consensus 372 ~~~~~g~~~~a~~~~~~m~~~g~~p---~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~-----------~~p~---~~ 434 (750)
.|...|++++|+.+|+++....... .......+..++.+.|++++|...++.+.+.. -.|+ ..
T Consensus 281 ~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~ 360 (765)
T PRK10049 281 AYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQ 360 (765)
T ss_pred HHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHH
Confidence 6777777777777777766543211 12345555666677777777777777776542 1123 22
Q ss_pred HHHHHHHHHHHhCChHHHHHHHHHHhhcccccccCCCCCCchhhhhhhhhhhcccccCCCCccCCCccccccccCCCCcc
Q 004480 435 CCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPT 514 (750)
Q Consensus 435 ~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 514 (750)
.+..+...+...|+.++|.++++++....
T Consensus 361 a~~~~a~~l~~~g~~~eA~~~l~~al~~~--------------------------------------------------- 389 (765)
T PRK10049 361 GQSLLSQVAKYSNDLPQAEMRARELAYNA--------------------------------------------------- 389 (765)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC---------------------------------------------------
Confidence 44556667778888888888888875431
Q ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHH
Q 004480 515 TTTYNILMKACCTDYYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQILKIMREDGMSPD-VVAYTTAIKVC 593 (750)
Q Consensus 515 ~~~~~~li~~~~~~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~li~~~ 593 (750)
+-+...+..+...+...|+.++|++.+++..+. .|+ ...+-.....+
T Consensus 390 ------------------------------P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l--~Pd~~~l~~~~a~~a 437 (765)
T PRK10049 390 ------------------------------PGNQGLRIDYASVLQARGWPRAAENELKKAEVL--EPRNINLEVEQAWTA 437 (765)
T ss_pred ------------------------------CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh--CCCChHHHHHHHHHH
Confidence 123344555566666666677777777666653 344 44555555566
Q ss_pred HHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 004480 594 VRSKRLKQAFSLFEEMKHYQIQPNLVTYITLL 625 (750)
Q Consensus 594 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li 625 (750)
.+.|++++|.++++++.+ ..|+......+=
T Consensus 438 l~~~~~~~A~~~~~~ll~--~~Pd~~~~~~~~ 467 (765)
T PRK10049 438 LDLQEWRQMDVLTDDVVA--REPQDPGVQRLA 467 (765)
T ss_pred HHhCCHHHHHHHHHHHHH--hCCCCHHHHHHH
Confidence 666677777777776665 245444333333
No 25
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.75 E-value=1.3e-13 Score=152.15 Aligned_cols=469 Identities=10% Similarity=0.018 Sum_probs=307.6
Q ss_pred CcchhhhHHHHHHHHhhcCChHHHHHHHHHHHHhcCChhhHHhhhhHHHHHHHHHhhhhcCchhHHHHHHHHHHhcCCCc
Q 004480 67 LSSRNDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAP 146 (750)
Q Consensus 67 p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~p 146 (750)
|.. +.....-+-...+.|+++.|+..|+++++. +|.....+. .++..+...|+.++|+..+++... |
T Consensus 31 p~~-~~~~y~~aii~~r~Gd~~~Al~~L~qaL~~--~P~~~~av~------dll~l~~~~G~~~~A~~~~eka~~----p 97 (822)
T PRK14574 31 PAM-ADTQYDSLIIRARAGDTAPVLDYLQEESKA--GPLQSGQVD------DWLQIAGWAGRDQEVIDVYERYQS----S 97 (822)
T ss_pred ccc-hhHHHHHHHHHHhCCCHHHHHHHHHHHHhh--CccchhhHH------HHHHHHHHcCCcHHHHHHHHHhcc----C
Confidence 443 334445556677899999999999999998 555321111 223336677999999999999983 2
Q ss_pred cccccchhhhhhHHHHHHhhccCcHHHHHHHHHHHHhCCCCCcccccHHHHHHHHHcCCChHHHHHHhhhCCC-Cc--ch
Q 004480 147 LELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPR-AD--IL 223 (750)
Q Consensus 147 ~~~~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-~~--~~ 223 (750)
++. .+..+...+..+...|++++|+++|+++++.. |++...+..++..+...++.++|++.++.+.+ ++ ..
T Consensus 98 ~n~----~~~~llalA~ly~~~gdyd~Aiely~kaL~~d--P~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~ 171 (822)
T PRK14574 98 MNI----SSRGLASAARAYRNEKRWDQALALWQSSLKKD--PTNPDLISGMIMTQADAGRGGVVLKQATELAERDPTVQN 171 (822)
T ss_pred CCC----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHH
Confidence 222 12222222334444899999999999999866 88888888888888999999999998877522 22 23
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCccHHHHHHHHHhhcC
Q 004480 224 FCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAH 303 (750)
Q Consensus 224 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~ 303 (750)
+..++..+...++..+|+..++++.+..+ -+...+..+..++.+.|-...|+++..+-+ +.++=......
T Consensus 172 ~l~layL~~~~~~~~~AL~~~ekll~~~P-~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p------~~f~~~~~~~l--- 241 (822)
T PRK14574 172 YMTLSYLNRATDRNYDALQASSEAVRLAP-TSEEVLKNHLEILQRNRIVEPALRLAKENP------NLVSAEHYRQL--- 241 (822)
T ss_pred HHHHHHHHHhcchHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCcHHHHHHHHhCc------cccCHHHHHHH---
Confidence 33344444445666669999999988542 356777888888888888888887766533 21111111100
Q ss_pred ChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHHcCCh---HHHHHHHHHHHHhhhcCCCccCHHHH----HHHHHHHHhc
Q 004480 304 DLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNT---VLAQEIYGEVKHLEAKGVLKLDVFTY----STIVKVFADA 376 (750)
Q Consensus 304 ~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~---~~A~~~~~~~~~~~~~g~~~~~~~~~----~~li~~~~~~ 376 (750)
..+.+ -++++.+..++.. ...++ +.|+.-++.+.... +..++....| .-.+-++...
T Consensus 242 ~~~~~----a~~vr~a~~~~~~----------~~~r~~~~d~ala~~~~l~~~~--~~~p~~~~~~~~~~~Drl~aL~~r 305 (822)
T PRK14574 242 ERDAA----AEQVRMAVLPTRS----------ETERFDIADKALADYQNLLTRW--GKDPEAQADYQRARIDRLGALLVR 305 (822)
T ss_pred HHHHH----HHHHhhccccccc----------chhhHHHHHHHHHHHHHHHhhc--cCCCccchHHHHHHHHHHHHHHHh
Confidence 00111 1112111111110 11122 33444444443321 1122222222 2345678899
Q ss_pred cCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-----CCCCHHHHHHHHHHHHHhCChHH
Q 004480 377 KWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAG-----CEPNSQCCNILLQACVEACQFDR 451 (750)
Q Consensus 377 g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~-----~~p~~~~~~~ll~~~~~~g~~~~ 451 (750)
|++.++++.|+.|...|.+....+-.++.++|...+++++|..+++.+.... ..++......|.-+|...+++++
T Consensus 306 ~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~ 385 (822)
T PRK14574 306 HQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDK 385 (822)
T ss_pred hhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHH
Confidence 9999999999999998876567788899999999999999999999997753 12344446788999999999999
Q ss_pred HHHHHHHHhhcccccccCCCCCCchhhhhhhhhhhcccccCCCCccCCCccccccccCCCCccHHHHH---HHHHHHHhc
Q 004480 452 AFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYN---ILMKACCTD 528 (750)
Q Consensus 452 A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~---~li~~~~~~ 528 (750)
|..+++++..... . ....+.+ + ...-.||-..+- +...++.++
T Consensus 386 A~~~l~~~~~~~p-~-~~~~~~~-------------------~-------------~~~pn~d~~~~~~l~a~~~~~~gd 431 (822)
T PRK14574 386 AYQFAVNYSEQTP-Y-QVGVYGL-------------------P-------------GKEPNDDWIEGQTLLVQSLVALND 431 (822)
T ss_pred HHHHHHHHHhcCC-c-EEeccCC-------------------C-------------CCCCCccHHHHHHHHHHHHHHcCC
Confidence 9999999986321 0 0000000 0 000134444443 333456678
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHH
Q 004480 529 YYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQILKIMREDGMSPD-VVAYTTAIKVCVRSKRLKQAFSLFE 607 (750)
Q Consensus 529 ~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~ 607 (750)
+.+|++.++++.... +-|......+.+.+...|++.+|++.++..... .|+ ..+......++...|++.+|..+.+
T Consensus 432 l~~Ae~~le~l~~~a-P~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l--~P~~~~~~~~~~~~al~l~e~~~A~~~~~ 508 (822)
T PRK14574 432 LPTAQKKLEDLSSTA-PANQNLRIALASIYLARDLPRKAEQELKAVESL--APRSLILERAQAETAMALQEWHQMELLTD 508 (822)
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhh--CCccHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 999999999997753 347778888999999999999999999777654 454 5667777788888899999999998
Q ss_pred HHHHCCCCCCHH
Q 004480 608 EMKHYQIQPNLV 619 (750)
Q Consensus 608 ~m~~~g~~p~~~ 619 (750)
...+. .|+..
T Consensus 509 ~l~~~--~Pe~~ 518 (822)
T PRK14574 509 DVISR--SPEDI 518 (822)
T ss_pred HHHhh--CCCch
Confidence 88763 56554
No 26
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.74 E-value=7.1e-14 Score=157.69 Aligned_cols=376 Identities=11% Similarity=-0.041 Sum_probs=275.3
Q ss_pred cCCcchhhhHHHHHHHHhhcCChHHHHHHHHHHHHhcCChhhHHhhhhHHHHHHHHHhhhhcCchhHHHHHHHHHHhcCC
Q 004480 65 RDLSSRNDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGV 144 (750)
Q Consensus 65 ~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~ 144 (750)
.+|.+ ...+..++..+...|++++|+.+++++++. +|...... ..++..+...|++++|+..++++.+.
T Consensus 44 ~~~~~-a~~~~~lA~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~------~~la~~l~~~g~~~eA~~~l~~~l~~-- 112 (765)
T PRK10049 44 HMQLP-ARGYAAVAVAYRNLKQWQNSLTLWQKALSL--EPQNDDYQ------RGLILTLADAGQYDEALVKAKQLVSG-- 112 (765)
T ss_pred hCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHH------HHHHHHHHHCCCHHHHHHHHHHHHHh--
Confidence 35666 667899999999999999999999999998 55543332 23444578999999999999999984
Q ss_pred CccccccchhhhhhHHHHHHhhccCcHHHHHHHHHHHHhCCCCCcccccHHHHHHHHHcCCChHHHHHHhhhCCCCcc--
Q 004480 145 APLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRADI-- 222 (750)
Q Consensus 145 ~p~~~~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-- 222 (750)
.|+... +..+.. .+...|+.++|+..++++++.. |++...+..++..+...+..++|++.++.++..+.
T Consensus 113 ~P~~~~----~~~la~---~l~~~g~~~~Al~~l~~al~~~--P~~~~~~~~la~~l~~~~~~e~Al~~l~~~~~~p~~~ 183 (765)
T PRK10049 113 APDKAN----LLALAY---VYKRAGRHWDELRAMTQALPRA--PQTQQYPTEYVQALRNNRLSAPALGAIDDANLTPAEK 183 (765)
T ss_pred CCCCHH----HHHHHH---HHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHCCChHHHHHHHHhCCCCHHHH
Confidence 565432 222322 3344899999999999999965 88888888889999999999999999887765321
Q ss_pred ------hHHHHHHHHH-----hcCCH---HHHHHHHHHHHhCC-CCCCHH-HH----HHHHHHHHhcCCHHHHHHHHHHH
Q 004480 223 ------LFCNFVREFG-----KKRDL---VSALRAYDASKKHL-SSPNMY-IC----RTIIDVCGICGDYMKSRAIYEDL 282 (750)
Q Consensus 223 ------~~~~l~~~~~-----~~g~~---~~A~~~~~~~~~~~-~~~~~~-~~----~~li~~~~~~g~~~~A~~~~~~m 282 (750)
....++.... ..+++ ++|+..++.+.+.- ..|+.. .+ ...+.++...|++++|+..|+.+
T Consensus 184 ~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~l 263 (765)
T PRK10049 184 RDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRL 263 (765)
T ss_pred HHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHh
Confidence 1222232222 22334 77888999888541 223221 11 11133456779999999999999
Q ss_pred HhCCCC-cc-HHHHHHHHHhhcCChHHHHHHHHHHHHcCCCC---CHhhHHHHHHHHHHcCChHHHHHHHHHHHHhhhc-
Q 004480 283 RSQNVT-LN-IYVFNSLMNVNAHDLKFTLEVYKNMQKLGVMA---DMASYNILLKACCLAGNTVLAQEIYGEVKHLEAK- 356 (750)
Q Consensus 283 ~~~g~~-~~-~~~~~~ll~~~~~~~~~a~~~~~~m~~~g~~~---~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~- 356 (750)
.+.+.. |+ ...+...+....+++++|+..|+++.+..... .......+..++...|++++|..+++.+......
T Consensus 264 l~~~~~~P~~a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~ 343 (765)
T PRK10049 264 KAEGQIIPPWAQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPF 343 (765)
T ss_pred hccCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCce
Confidence 987632 33 44444555556789999999999987643111 1345666777889999999999999998863100
Q ss_pred ----C--CCccC---HHHHHHHHHHHHhccCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 004480 357 ----G--VLKLD---VFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQA 427 (750)
Q Consensus 357 ----g--~~~~~---~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 427 (750)
+ .-.|+ ...+..+...+...|++++|+++++++.... +.+...+..+...+...|++++|++.+++..+.
T Consensus 344 ~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~-P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l 422 (765)
T PRK10049 344 LRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNA-PGNQGLRIDYASVLQARGWPRAAENELKKAEVL 422 (765)
T ss_pred EeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Confidence 0 00122 2345667778899999999999999998764 446788999999999999999999999999886
Q ss_pred CCCCC-HHHHHHHHHHHHHhCChHHHHHHHHHHhhcc
Q 004480 428 GCEPN-SQCCNILLQACVEACQFDRAFRLFRSWTLSK 463 (750)
Q Consensus 428 ~~~p~-~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~ 463 (750)
.|+ ...+......+.+.|++++|..+++++....
T Consensus 423 --~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~ 457 (765)
T PRK10049 423 --EPRNINLEVEQAWTALDLQEWRQMDVLTDDVVARE 457 (765)
T ss_pred --CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC
Confidence 454 5666677778899999999999999988754
No 27
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.72 E-value=2.2e-12 Score=142.63 Aligned_cols=420 Identities=11% Similarity=0.043 Sum_probs=304.7
Q ss_pred hccCcHHHHHHHHHHHHhCCCCCcccccHHHHHHHHHcCCChHHHHHHhhhCCC--CcchHHH--HHHHHHhcCCHHHHH
Q 004480 166 LDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPR--ADILFCN--FVREFGKKRDLVSAL 241 (750)
Q Consensus 166 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~--l~~~~~~~g~~~~A~ 241 (750)
.+.|++++|++.|++.++.. |.+......++..+...|+.++|+.++++.-. +...+.. ++..|...|++++|+
T Consensus 45 ~r~Gd~~~Al~~L~qaL~~~--P~~~~av~dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~llalA~ly~~~gdyd~Ai 122 (822)
T PRK14574 45 ARAGDTAPVLDYLQEESKAG--PLQSGQVDDWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLASAARAYRNEKRWDQAL 122 (822)
T ss_pred HhCCCHHHHHHHHHHHHhhC--ccchhhHHHHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHH
Confidence 44899999999999999855 76643333788888899999999999988632 2333333 466888999999999
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCccHHHHHHHHHhh--cCChHHHHHHHHHHHHcC
Q 004480 242 RAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVN--AHDLKFTLEVYKNMQKLG 319 (750)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~--~~~~~~a~~~~~~m~~~g 319 (750)
++|+++.+..+ -+...+..++..+...++.++|++.++.+... .|+...+..+...+ .++..+|++.++++.+..
T Consensus 123 ely~kaL~~dP-~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~~~~~AL~~~ekll~~~ 199 (822)
T PRK14574 123 ALWQSSLKKDP-TNPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQNYMTLSYLNRATDRNYDALQASSEAVRLA 199 (822)
T ss_pred HHHHHHHhhCC-CCHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHHHHHHHHHhcchHHHHHHHHHHHHHhC
Confidence 99999998654 34667778888899999999999999999876 45666664444433 245556999999999875
Q ss_pred CCCCHhhHHHHHHHHHHcCChHHHHHHHHHHHHhhhcCCCccCHHHH------HHHHHHH-----HhccC---HHHHHHH
Q 004480 320 VMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTY------STIVKVF-----ADAKW---WQMALKV 385 (750)
Q Consensus 320 ~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~g~~~~~~~~~------~~li~~~-----~~~g~---~~~a~~~ 385 (750)
+-+...+..+..++.+.|-...|.++..+-+.+ +.+....+ ..+++.- ....+ .+.|+.-
T Consensus 200 -P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~-----f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~ 273 (822)
T PRK14574 200 -PTSEEVLKNHLEILQRNRIVEPALRLAKENPNL-----VSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALAD 273 (822)
T ss_pred -CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccc-----cCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHH
Confidence 456778888999999999999999887765432 22221111 1111110 01223 3445555
Q ss_pred HHHHHHC-CCCCCH-----HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCChHHHHHHHHHH
Q 004480 386 KEDMLSA-GVTPNT-----ITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSW 459 (750)
Q Consensus 386 ~~~m~~~-g~~p~~-----~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~ 459 (750)
++.+... +..|.. ....-.+-++.+.|+..++++.|+.+...+.+....+-..+.++|...+++++|..+|+.+
T Consensus 274 ~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~ 353 (822)
T PRK14574 274 YQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSL 353 (822)
T ss_pred HHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHH
Confidence 6665542 222322 2233456678899999999999999999887666778899999999999999999999998
Q ss_pred hhcccccccCCCCCCchhhhhhhhhhhcccccCCCCccCCCccccccccCCCCccHHHHHHHHHHHH--hcHHHHHHHHH
Q 004480 460 TLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACC--TDYYRVKALMN 537 (750)
Q Consensus 460 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~--~~~~~a~~l~~ 537 (750)
....... ....++......|..++. .++++|..+++
T Consensus 354 ~~~~~~~------------------------------------------~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~ 391 (822)
T PRK14574 354 YYSDGKT------------------------------------------FRNSDDLLDADDLYYSLNESEQLDKAYQFAV 391 (822)
T ss_pred hhccccc------------------------------------------cCCCcchHHHHHHHHHHHhcccHHHHHHHHH
Confidence 6542110 011344544567777776 47899999999
Q ss_pred HHHHcCC-----------CC--CHH-HHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 004480 538 EMRTVGL-----------SP--NHI-SWTILIDACGGSGNVEGALQILKIMREDGMSPDVVAYTTAIKVCVRSKRLKQAF 603 (750)
Q Consensus 538 ~m~~~~~-----------~p--~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~ 603 (750)
.+.+... .| |-. .+..++..+...|++.+|++.++++.... +-|......+...+...|.+.+|.
T Consensus 392 ~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~a-P~n~~l~~~~A~v~~~Rg~p~~A~ 470 (822)
T PRK14574 392 NYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTA-PANQNLRIALASIYLARDLPRKAE 470 (822)
T ss_pred HHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHHHH
Confidence 9987411 12 222 24456777889999999999999998753 337888999999999999999999
Q ss_pred HHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHH
Q 004480 604 SLFEEMKHYQIQP-NLVTYITLLRARSRYGSLHEVQQCL 641 (750)
Q Consensus 604 ~~~~~m~~~g~~p-~~~t~~~li~~~~~~g~~~~~~~a~ 641 (750)
+.++.... +.| +..+......++...|++.++++.+
T Consensus 471 ~~~k~a~~--l~P~~~~~~~~~~~~al~l~e~~~A~~~~ 507 (822)
T PRK14574 471 QELKAVES--LAPRSLILERAQAETAMALQEWHQMELLT 507 (822)
T ss_pred HHHHHHhh--hCCccHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 99977765 366 4677778888888888887765533
No 28
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.71 E-value=1.9e-13 Score=131.24 Aligned_cols=455 Identities=14% Similarity=0.103 Sum_probs=268.2
Q ss_pred hhhhhhHHHHHHhhccCcHHHHHHHHHHHHhCCCCCcccccHHHHHHHHHcCCChHHHHHHhhhC----CCCc-----ch
Q 004480 153 SGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIV----PRAD-----IL 223 (750)
Q Consensus 153 ~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~----~~~~-----~~ 223 (750)
.+|+++.+.+..|.......+|+..|+-+++....|+....-..++..+.+.+.+.+|+++|+.. |.-. .+
T Consensus 199 ltfsvl~nlaqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~riki 278 (840)
T KOG2003|consen 199 LTFSVLFNLAQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKI 278 (840)
T ss_pred chHHHHHHHHHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHH
Confidence 47888888888888788999999999999998888888777788899999999999999998774 3321 46
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC------------CccH
Q 004480 224 FCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNV------------TLNI 291 (750)
Q Consensus 224 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~------------~~~~ 291 (750)
.+++...+.+.|++++|+..|+...+. .|+..+--.|+-++..-|+.++..+.|..|..-.. .|+.
T Consensus 279 l~nigvtfiq~gqy~dainsfdh~m~~--~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~ 356 (840)
T KOG2003|consen 279 LNNIGVTFIQAGQYDDAINSFDHCMEE--APNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDD 356 (840)
T ss_pred HhhcCeeEEecccchhhHhhHHHHHHh--CccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcch
Confidence 777778899999999999999988773 48877655555556677999999999999976432 2344
Q ss_pred HHHHHHHHh-----hc-C---ChHHHHHHHHHHHHcCCCCCHhh-------------H--------HHHHHHHHHcCChH
Q 004480 292 YVFNSLMNV-----NA-H---DLKFTLEVYKNMQKLGVMADMAS-------------Y--------NILLKACCLAGNTV 341 (750)
Q Consensus 292 ~~~~~ll~~-----~~-~---~~~~a~~~~~~m~~~g~~~~~~~-------------~--------~~ll~~~~~~g~~~ 341 (750)
...+-.|.. .. . +.+.+.-.--.++..-+.|+-.. + -.-...|.+.|+++
T Consensus 357 ~ll~eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~ 436 (840)
T KOG2003|consen 357 NLLNEAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDIE 436 (840)
T ss_pred HHHHHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHH
Confidence 444433332 11 1 11222111111111112222100 0 01123578999999
Q ss_pred HHHHHHHHHHHhhhcCCCccCHH-HHHHHHHHHHhccCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 004480 342 LAQEIYGEVKHLEAKGVLKLDVF-TYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHL 420 (750)
Q Consensus 342 ~A~~~~~~~~~~~~~g~~~~~~~-~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~ 420 (750)
.|.+++.-+.+. +.. ..+.. +-..++..+.-..++..|.++-+..+..+ .-+....+.-.+.-...|++++|.+.
T Consensus 437 ~aieilkv~~~k--dnk-~~saaa~nl~~l~flqggk~~~~aqqyad~aln~d-ryn~~a~~nkgn~~f~ngd~dka~~~ 512 (840)
T KOG2003|consen 437 GAIEILKVFEKK--DNK-TASAAANNLCALRFLQGGKDFADAQQYADIALNID-RYNAAALTNKGNIAFANGDLDKAAEF 512 (840)
T ss_pred HHHHHHHHHHhc--cch-hhHHHhhhhHHHHHHhcccchhHHHHHHHHHhccc-ccCHHHhhcCCceeeecCcHHHHHHH
Confidence 999999887752 110 11111 11222222223446777777777666442 22344444444444567888888888
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHHhCChHHHHHHHHHHhhcccccccCCCCCCchhhhhhhhhhhcccccCCCCccCCC
Q 004480 421 FEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNS 500 (750)
Q Consensus 421 ~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 500 (750)
+++.+...-.-....||+=+ .+...|++++|++.|-++..--.. ............+.++.. ..
T Consensus 513 ykeal~ndasc~ealfnigl-t~e~~~~ldeald~f~klh~il~n--n~evl~qianiye~led~-------------aq 576 (840)
T KOG2003|consen 513 YKEALNNDASCTEALFNIGL-TAEALGNLDEALDCFLKLHAILLN--NAEVLVQIANIYELLEDP-------------AQ 576 (840)
T ss_pred HHHHHcCchHHHHHHHHhcc-cHHHhcCHHHHHHHHHHHHHHHHh--hHHHHHHHHHHHHHhhCH-------------HH
Confidence 88877654333334444433 345678888888877665421000 000000000000000000 00
Q ss_pred ccccccccCCC-CccHHHHHHHHHHHHhcHH--HHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHC
Q 004480 501 HYSSFDKRFSF-KPTTTTYNILMKACCTDYY--RVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQILKIMRED 577 (750)
Q Consensus 501 ~~~~~~~~~~~-~p~~~~~~~li~~~~~~~~--~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 577 (750)
.+...|....+ +-|....+.+-.-|-+.++ +|.+.+-+--+ -++-+..|...|...|....-+++|+.+|++..-
T Consensus 577 aie~~~q~~slip~dp~ilskl~dlydqegdksqafq~~ydsyr-yfp~nie~iewl~ayyidtqf~ekai~y~ekaal- 654 (840)
T KOG2003|consen 577 AIELLMQANSLIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYR-YFPCNIETIEWLAAYYIDTQFSEKAINYFEKAAL- 654 (840)
T ss_pred HHHHHHHhcccCCCCHHHHHHHHHHhhcccchhhhhhhhhhccc-ccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHh-
Confidence 01111222222 3344555555555554443 33333222111 1334566666677777777777777777777654
Q ss_pred CCCCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 004480 578 GMSPDVVAYTTAIKVCVR-SKRLKQAFSLFEEMKHYQIQPNLVTYITLLRARSRYGS 633 (750)
Q Consensus 578 g~~p~~~~~~~li~~~~~-~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~ 633 (750)
++|+..-|..||..|.+ .|++.+|+++|+...+. +.-|......|++.|...|-
T Consensus 655 -iqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrk-fpedldclkflvri~~dlgl 709 (840)
T KOG2003|consen 655 -IQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRK-FPEDLDCLKFLVRIAGDLGL 709 (840)
T ss_pred -cCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHh-CccchHHHHHHHHHhccccc
Confidence 57788788777765544 67788888888777653 55577777777777666664
No 29
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.66 E-value=3.3e-11 Score=126.50 Aligned_cols=513 Identities=14% Similarity=0.097 Sum_probs=331.5
Q ss_pred hHHHHHHHHhhcCChHHHHHHHHHHHHhcCChhhHHhhhhHHHHHHHHHhhhhcCchhHHHHHHHHHHhcCCCccccccc
Q 004480 73 YYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLELFDG 152 (750)
Q Consensus 73 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~p~~~~~~ 152 (750)
.....+..+..+|++++|+.++.+.++. +|..+.....++.+ |-.+|+.+++...+-.+- .+.|+..
T Consensus 141 ~ll~eAN~lfarg~~eeA~~i~~EvIkq--dp~~~~ay~tL~~I------yEqrGd~eK~l~~~llAA--HL~p~d~--- 207 (895)
T KOG2076|consen 141 QLLGEANNLFARGDLEEAEEILMEVIKQ--DPRNPIAYYTLGEI------YEQRGDIEKALNFWLLAA--HLNPKDY--- 207 (895)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHh--CccchhhHHHHHHH------HHHcccHHHHHHHHHHHH--hcCCCCh---
Confidence 3344455566679999999999999999 66665554444444 899999999887764443 4666543
Q ss_pred hhhhhhHHHHHHhhccCcHHHHHHHHHHHHhCCCCCcccccHHHHHHHHHcCCChHHHHHHhhhC----CCCc-----ch
Q 004480 153 SGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIV----PRAD-----IL 223 (750)
Q Consensus 153 ~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~----~~~~-----~~ 223 (750)
..+..+.. ...+.|.+.+|.-+|.+.++.. |.+......-...|.+.|+...|...|..+ |+.. ..
T Consensus 208 e~W~~lad---ls~~~~~i~qA~~cy~rAI~~~--p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~ 282 (895)
T KOG2076|consen 208 ELWKRLAD---LSEQLGNINQARYCYSRAIQAN--PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDL 282 (895)
T ss_pred HHHHHHHH---HHHhcccHHHHHHHHHHHHhcC--CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHH
Confidence 33333333 3344899999999999999866 888888888888999999999998776553 5333 22
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCccHHHH--------
Q 004480 224 FCNFVREFGKKRDLVSALRAYDASKKHL-SSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVF-------- 294 (750)
Q Consensus 224 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~-------- 294 (750)
-...+..+...++-+.|.+.++.....+ -..+...++.++..+.+...++.|......+..+...+|..-|
T Consensus 283 i~~~~~~~~~~~~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~ 362 (895)
T KOG2076|consen 283 IRRVAHYFITHNERERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRRE 362 (895)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccc
Confidence 3335677778888899999998877632 2245667888899999999999999998888763322332222
Q ss_pred -------------------HHHHHh-hcCChHHHHHHHHHHHHcC--CCCCHhhHHHHHHHHHHcCChHHHHHHHHHHHH
Q 004480 295 -------------------NSLMNV-NAHDLKFTLEVYKNMQKLG--VMADMASYNILLKACCLAGNTVLAQEIYGEVKH 352 (750)
Q Consensus 295 -------------------~~ll~~-~~~~~~~a~~~~~~m~~~g--~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~ 352 (750)
...+.. ..+..+....+...+.+.+ ..-++..|..+..+|...|++.+|..+|..+..
T Consensus 363 ~~~~~~~~~~~~s~~l~v~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~ 442 (895)
T KOG2076|consen 363 EPNALCEVGKELSYDLRVIRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITN 442 (895)
T ss_pred cccccccCCCCCCccchhHhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhc
Confidence 222221 1134444555555566655 444567888999999999999999999999986
Q ss_pred hhhcCCCccCHHHHHHHHHHHHhccCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH-------
Q 004480 353 LEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEML------- 425 (750)
Q Consensus 353 ~~~~g~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~------- 425 (750)
.. .--+...|-.+..+|...|.+++|.+.|+..+... +-+...-..|-..+.+.|+.++|.+.+..+.
T Consensus 443 ~~----~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~-p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~ 517 (895)
T KOG2076|consen 443 RE----GYQNAFVWYKLARCYMELGEYEEAIEFYEKVLILA-PDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNA 517 (895)
T ss_pred Cc----cccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccch
Confidence 21 22357789999999999999999999999999863 2245556677778889999999999999854
Q ss_pred -HcCCCCCHHHHHHHHHHHHHhCChHHHHHHHHHHhhcccccccCCCCCCchhhhhhhhhhhcccccCCCCccCCCcccc
Q 004480 426 -QAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSS 504 (750)
Q Consensus 426 -~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 504 (750)
..+..|+........+.+.+.|+.++-...-..|.......-.. +. ..+........
T Consensus 518 e~~a~~~e~ri~~~r~d~l~~~gk~E~fi~t~~~Lv~~~~~~~~~---------f~--~~~k~r~~~~~----------- 575 (895)
T KOG2076|consen 518 EACAWEPERRILAHRCDILFQVGKREEFINTASTLVDDFLKKRYI---------FP--RNKKKRRRAIA----------- 575 (895)
T ss_pred hhccccHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHh---------cc--hHHHHHHHhhc-----------
Confidence 33456666777777788889999888766666665432211000 00 00000000000
Q ss_pred ccccCCCCccHHHHHHHHHHHHh--c---HHHH---HHHHHHHHHcCCCCCHH--HHHHHHHHHHcCCCHHHHHHHHHHH
Q 004480 505 FDKRFSFKPTTTTYNILMKACCT--D---YYRV---KALMNEMRTVGLSPNHI--SWTILIDACGGSGNVEGALQILKIM 574 (750)
Q Consensus 505 ~~~~~~~~p~~~~~~~li~~~~~--~---~~~a---~~l~~~m~~~~~~p~~~--~~~~li~~~~~~g~~~~A~~~~~~m 574 (750)
..+..-.......++.+-.+ + .+.+ ...+..-...|+.-+.. .+.-++..+++.+++.+|+.+...+
T Consensus 576 ---~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~d~~~~~~~e~~~Lsiddwfel~~e~i~~L~k~~r~qeAl~vv~~a 652 (895)
T KOG2076|consen 576 ---GTTSKRYSELLKQIIRAREKATDDNVMEKALSDGTEFRAVELRGLSIDDWFELFRELILSLAKLQRVQEALSVVFTA 652 (895)
T ss_pred ---cccccccchhHHHHHHHHhccCchHHhhhcccchhhhhhhhhccCcHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 00001111111222222211 0 0000 01122222233333332 4566778889999999999999888
Q ss_pred HHCCC--CCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHC-CC--CCC-HHHHHHHHHHHHhcCC
Q 004480 575 REDGM--SPDV---VAYTTAIKVCVRSKRLKQAFSLFEEMKHY-QI--QPN-LVTYITLLRARSRYGS 633 (750)
Q Consensus 575 ~~~g~--~p~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~--~p~-~~t~~~li~~~~~~g~ 633 (750)
.+... .++. ..=...+.+.+..+++..|.+.++.|... +. .|. ...||..++.+.+.|+
T Consensus 653 ~~~~~f~~~~~~~k~l~~~~l~~s~~~~d~~~a~~~lR~~i~~~~~~~~~~q~~l~n~~~s~~~~~~q 720 (895)
T KOG2076|consen 653 LEAYIFFQDSEIRKELQFLGLKASLYARDPGDAFSYLRSVITQFQFYLDVYQLNLWNLDFSYFSKYGQ 720 (895)
T ss_pred HhhhhhhccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHH
Confidence 76421 1222 23355667778889999999999998853 21 232 3455656666666654
No 30
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.64 E-value=7.3e-13 Score=126.63 Aligned_cols=344 Identities=17% Similarity=0.225 Sum_probs=253.6
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCccHHHHHHHHHh--hc--CChHHH-HHHHHHHHHcCCCCCHhhHHH
Q 004480 255 NMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNV--NA--HDLKFT-LEVYKNMQKLGVMADMASYNI 329 (750)
Q Consensus 255 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~--~~--~~~~~a-~~~~~~m~~~g~~~~~~~~~~ 329 (750)
.+.+=|.|+. ....|.+.++.-+|+.|.+.|+......-..|++. +- .+..-+ ++.|-.|.+.| ..+..+|
T Consensus 115 ~V~~E~nL~k-mIS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~-E~S~~sW-- 190 (625)
T KOG4422|consen 115 QVETENNLLK-MISSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFG-EDSTSSW-- 190 (625)
T ss_pred hhcchhHHHH-HHhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccc-ccccccc--
Confidence 3456777777 45678899999999999999988777666666663 22 233333 34555665555 2333444
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHhhhcCCCccCHHHHHHHHHHHHhccCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 004480 330 LLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACA 409 (750)
Q Consensus 330 ll~~~~~~g~~~~A~~~~~~~~~~~~~g~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~ 409 (750)
+.|++.+ -+|+. .+.+..+|..||.++|+--..+.|.+++++-.....+.+..+||.+|.+-.
T Consensus 191 ------K~G~vAd--L~~E~---------~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S 253 (625)
T KOG4422|consen 191 ------KSGAVAD--LLFET---------LPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASS 253 (625)
T ss_pred ------ccccHHH--HHHhh---------cCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHH
Confidence 3454433 33433 345778999999999999999999999999988777889999999998754
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCChHHHHHHHHHHhhcccccccCCCCCCchhhhhhhhhhhccc
Q 004480 410 NAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQS 489 (750)
Q Consensus 410 ~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 489 (750)
-.. ..+++.+|....+.||..|+|+++.+..+.|+++.|..-+-++..
T Consensus 254 ~~~----~K~Lv~EMisqkm~Pnl~TfNalL~c~akfg~F~~ar~aalqil~---------------------------- 301 (625)
T KOG4422|consen 254 YSV----GKKLVAEMISQKMTPNLFTFNALLSCAAKFGKFEDARKAALQILG---------------------------- 301 (625)
T ss_pred hhc----cHHHHHHHHHhhcCCchHhHHHHHHHHHHhcchHHHHHHHHHHHH----------------------------
Confidence 332 378899999999999999999999999999998887665544332
Q ss_pred ccCCCCccCCCccccccccCCCCccHHHHHHHHHHHHhcHH---HHHHHHHHHH----HcCCCC----CHHHHHHHHHHH
Q 004480 490 ITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTDYY---RVKALMNEMR----TVGLSP----NHISWTILIDAC 558 (750)
Q Consensus 490 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~---~a~~l~~~m~----~~~~~p----~~~~~~~li~~~ 558 (750)
.|+..|+.|...+|..+|.-+++..+ .+..++.++. ...++| |...|...+..|
T Consensus 302 ---------------EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~FF~~AM~Ic 366 (625)
T KOG4422|consen 302 ---------------EMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNKFFQSAMSIC 366 (625)
T ss_pred ---------------HHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhHHHHHHHHHH
Confidence 35666789999999999999987433 3555444444 233333 556788888999
Q ss_pred HcCCCHHHHHHHHHHHHHC----CCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 004480 559 GGSGNVEGALQILKIMRED----GMSPD---VVAYTTAIKVCVRSKRLKQAFSLFEEMKHYQIQPNLVTYITLLRARSRY 631 (750)
Q Consensus 559 ~~~g~~~~A~~~~~~m~~~----g~~p~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~ 631 (750)
.+..+.+-|.++-.-.... -+.|+ ..-|..+....|+....+.-...|+.|+-.-+-|+..+...++++..-.
T Consensus 367 ~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~~lrA~~v~ 446 (625)
T KOG4422|consen 367 SSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMIHLLRALDVA 446 (625)
T ss_pred HHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhHHHHHHHHhhc
Confidence 9999999999987776542 13333 2346778888999999999999999999877889999999999999888
Q ss_pred CCHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhh
Q 004480 632 GSLHEVQQCLAVYQDMWKAGYKANDTYLKELIEEWCEG 669 (750)
Q Consensus 632 g~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~ 669 (750)
|+++-. -+++.+|...|-.-+......++.-+|+.
T Consensus 447 ~~~e~i---pRiw~D~~~~ght~r~~l~eeil~~L~~~ 481 (625)
T KOG4422|consen 447 NRLEVI---PRIWKDSKEYGHTFRSDLREEILMLLARD 481 (625)
T ss_pred CcchhH---HHHHHHHHHhhhhhhHHHHHHHHHHHhcC
Confidence 887764 34777888887666655555666666653
No 31
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.53 E-value=7.6e-10 Score=116.53 Aligned_cols=297 Identities=12% Similarity=0.132 Sum_probs=203.5
Q ss_pred HHHhhccCcHHHHHHHHHHHHhCCCCCcccccHHHHHHHHHcCCChHHHHHHhhh----CCCCcchHHHHHHHHHhcCCH
Q 004480 162 CQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACI----VPRADILFCNFVREFGKKRDL 237 (750)
Q Consensus 162 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~----~~~~~~~~~~l~~~~~~~g~~ 237 (750)
+..+.-.|+.++|..++.+++... |.....|..|+..|-+.|+..++...+-. -|.+...|..+.....+.|.+
T Consensus 146 AN~lfarg~~eeA~~i~~EvIkqd--p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~i 223 (895)
T KOG2076|consen 146 ANNLFARGDLEEAEEILMEVIKQD--PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGNI 223 (895)
T ss_pred HHHHHHhCCHHHHHHHHHHHHHhC--ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcccH
Confidence 333333699999999999999866 88999999999999999999999887544 377779999999999999999
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCccHHHHHHHHHhhc------CChHHHHHH
Q 004480 238 VSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNA------HDLKFTLEV 311 (750)
Q Consensus 238 ~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~------~~~~~a~~~ 311 (750)
+.|.-.|.+.++..+ ++...+-.-...|-+.|+...|..-|.++.....+.|..-+..++...+ ++.+.|.+.
T Consensus 224 ~qA~~cy~rAI~~~p-~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~ 302 (895)
T KOG2076|consen 224 NQARYCYSRAIQANP-SNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKA 302 (895)
T ss_pred HHHHHHHHHHHhcCC-cchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 999999999998654 4444555556678899999999999999998755444444444444321 344777777
Q ss_pred HHHHHHc-CCCCCHhhHHHHHHHHHHcCChHHHHHHHHHHHHhh----------------------hcC-CCccCHHHHH
Q 004480 312 YKNMQKL-GVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLE----------------------AKG-VLKLDVFTYS 367 (750)
Q Consensus 312 ~~~m~~~-g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~----------------------~~g-~~~~~~~~~~ 367 (750)
++..... +-..+...++.++..+.+...++.|........... ..| .+.++... -
T Consensus 303 le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v-~ 381 (895)
T KOG2076|consen 303 LEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRV-I 381 (895)
T ss_pred HHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchh-H
Confidence 7766552 234556678888999999999999888776665410 000 01122222 1
Q ss_pred HHHHHHHhccCHHHHHHHHHHHHHCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Q 004480 368 TIVKVFADAKWWQMALKVKEDMLSAG--VTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVE 445 (750)
Q Consensus 368 ~li~~~~~~g~~~~a~~~~~~m~~~g--~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~ 445 (750)
.++-++......+....+...+.... +.-+...|..+..+|.+.|++.+|+.+|..+......-+...|--+..+|..
T Consensus 382 rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~ 461 (895)
T KOG2076|consen 382 RLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYME 461 (895)
T ss_pred hHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHH
Confidence 22223333333333333333344433 3334455666777777777777777777777765444455667777777777
Q ss_pred hCChHHHHHHHHHHhhc
Q 004480 446 ACQFDRAFRLFRSWTLS 462 (750)
Q Consensus 446 ~g~~~~A~~~~~~~~~~ 462 (750)
.|..+.|.+.|+.....
T Consensus 462 l~e~e~A~e~y~kvl~~ 478 (895)
T KOG2076|consen 462 LGEYEEAIEFYEKVLIL 478 (895)
T ss_pred HhhHHHHHHHHHHHHhc
Confidence 77777777777766543
No 32
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.52 E-value=1.6e-08 Score=102.63 Aligned_cols=316 Identities=16% Similarity=0.101 Sum_probs=197.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCccHHHHHHHHHh--hcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHH
Q 004480 258 ICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNV--NAHDLKFTLEVYKNMQKLGVMADMASYNILLKACC 335 (750)
Q Consensus 258 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~--~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~ 335 (750)
+|+.-.+.|.+.+.++-|..+|...++.- +-+...|...... .-|..+....+|.+.... ++-....|-...+.+-
T Consensus 518 tw~~da~~~~k~~~~~carAVya~alqvf-p~k~slWlra~~~ek~hgt~Esl~Allqkav~~-~pkae~lwlM~ake~w 595 (913)
T KOG0495|consen 518 TWLDDAQSCEKRPAIECARAVYAHALQVF-PCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQ-CPKAEILWLMYAKEKW 595 (913)
T ss_pred HHhhhHHHHHhcchHHHHHHHHHHHHhhc-cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHh-CCcchhHHHHHHHHHH
Confidence 44444444555555555555555544331 2223333333222 225566667777777664 2334455555566677
Q ss_pred HcCChHHHHHHHHHHHHhhhcCCCccCHHHHHHHHHHHHhccCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH
Q 004480 336 LAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVE 415 (750)
Q Consensus 336 ~~g~~~~A~~~~~~~~~~~~~g~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~ 415 (750)
..|++..|..++..+-+. .+.+...|.+-+........++.|..+|.+.... .|+...|.--+....-.++.+
T Consensus 596 ~agdv~~ar~il~~af~~-----~pnseeiwlaavKle~en~e~eraR~llakar~~--sgTeRv~mKs~~~er~ld~~e 668 (913)
T KOG0495|consen 596 KAGDVPAARVILDQAFEA-----NPNSEEIWLAAVKLEFENDELERARDLLAKARSI--SGTERVWMKSANLERYLDNVE 668 (913)
T ss_pred hcCCcHHHHHHHHHHHHh-----CCCcHHHHHHHHHHhhccccHHHHHHHHHHHhcc--CCcchhhHHHhHHHHHhhhHH
Confidence 778888888888887762 2335667888888888888888888888887764 567777777777777788888
Q ss_pred HHHHHHHHHHHcCCCCC-HHHHHHHHHHHHHhCChHHHHHHHHHHhhcccccccCCCCCCchhhhhhhhhhhcccccCCC
Q 004480 416 QAMHLFEEMLQAGCEPN-SQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTP 494 (750)
Q Consensus 416 ~a~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 494 (750)
+|.+++++.++. -|+ ...|-.+-+.+.+.++++.|.+.|..-.+
T Consensus 669 eA~rllEe~lk~--fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k--------------------------------- 713 (913)
T KOG0495|consen 669 EALRLLEEALKS--FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTK--------------------------------- 713 (913)
T ss_pred HHHHHHHHHHHh--CCchHHHHHHHhHHHHHHHHHHHHHHHHHhccc---------------------------------
Confidence 888888888775 344 34666677778888888888877754322
Q ss_pred CccCCCccccccccCCCCccHHHHHHHHHHHH---hcHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHH
Q 004480 495 NFVPNSHYSSFDKRFSFKPTTTTYNILMKACC---TDYYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQIL 571 (750)
Q Consensus 495 ~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~---~~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~ 571 (750)
..|+..-.-.++.-+- +..-+|..+++.....+. -+...|-..|.+=.+.|+.+.|..++
T Consensus 714 ----------------~cP~~ipLWllLakleEk~~~~~rAR~ildrarlkNP-k~~~lwle~Ir~ElR~gn~~~a~~lm 776 (913)
T KOG0495|consen 714 ----------------KCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKNP-KNALLWLESIRMELRAGNKEQAELLM 776 (913)
T ss_pred ----------------cCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcCC-CcchhHHHHHHHHHHcCCHHHHHHHH
Confidence 2444444444433332 245677777777776542 35667777788888888888887777
Q ss_pred HHHHHC----C-------------------------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHH
Q 004480 572 KIMRED----G-------------------------MSPDVVAYTTAIKVCVRSKRLKQAFSLFEEMKHYQIQP-NLVTY 621 (750)
Q Consensus 572 ~~m~~~----g-------------------------~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~ 621 (750)
.+..+. | +.-|....-.+...|....++++|.+.|.+.++. .| +-.+|
T Consensus 777 akALQecp~sg~LWaEaI~le~~~~rkTks~DALkkce~dphVllaia~lfw~e~k~~kar~Wf~Ravk~--d~d~GD~w 854 (913)
T KOG0495|consen 777 AKALQECPSSGLLWAEAIWLEPRPQRKTKSIDALKKCEHDPHVLLAIAKLFWSEKKIEKAREWFERAVKK--DPDNGDAW 854 (913)
T ss_pred HHHHHhCCccchhHHHHHHhccCcccchHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHcc--CCccchHH
Confidence 766542 0 1124444445555556666666666666666653 33 34556
Q ss_pred HHHHHHHHhcCCHHH
Q 004480 622 ITLLRARSRYGSLHE 636 (750)
Q Consensus 622 ~~li~~~~~~g~~~~ 636 (750)
.-+...+.++|.-++
T Consensus 855 a~fykfel~hG~eed 869 (913)
T KOG0495|consen 855 AWFYKFELRHGTEED 869 (913)
T ss_pred HHHHHHHHHhCCHHH
Confidence 666666666665433
No 33
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.48 E-value=1.7e-10 Score=120.68 Aligned_cols=283 Identities=10% Similarity=-0.060 Sum_probs=210.4
Q ss_pred cCcHHHHHHHHHHHHhCCCCCcccccHHHHHHHHHcCCChHHHHHHhhhC----CCCcc-hHHHHHHHHHhcCCHHHHHH
Q 004480 168 SGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIV----PRADI-LFCNFVREFGKKRDLVSALR 242 (750)
Q Consensus 168 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~----~~~~~-~~~~l~~~~~~~g~~~~A~~ 242 (750)
.|+++.|.+.+.+..+.. |.....+...+.+..+.|+++.|.+++... |.+.. +.......+...|+++.|..
T Consensus 97 ~g~~~~A~~~l~~~~~~~--~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al~ 174 (409)
T TIGR00540 97 EGDYAKAEKLIAKNADHA--AEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAARH 174 (409)
T ss_pred CCCHHHHHHHHHHHhhcC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHHH
Confidence 799999999999877644 555555666678888999999999998773 44432 44446888889999999999
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCccHHHHHHHHHhhcC-----ChHHHHHHHHHHHH
Q 004480 243 AYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAH-----DLKFTLEVYKNMQK 317 (750)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~-----~~~~a~~~~~~m~~ 317 (750)
.++.+.+..+ -+..++..+...+.+.|++++|.+.+..+.+.++.+.......-..+..+ ..+.+.+.+..+.+
T Consensus 175 ~l~~l~~~~P-~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~ 253 (409)
T TIGR00540 175 GVDKLLEMAP-RHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNWWK 253 (409)
T ss_pred HHHHHHHhCC-CCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 9999998653 35678889999999999999999999999998765333221111122211 11222334444444
Q ss_pred cC---CCCCHhhHHHHHHHHHHcCChHHHHHHHHHHHHhhhcCCCccCHHH---HHHHHHHHHhccCHHHHHHHHHHHHH
Q 004480 318 LG---VMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFT---YSTIVKVFADAKWWQMALKVKEDMLS 391 (750)
Q Consensus 318 ~g---~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~g~~~~~~~~---~~~li~~~~~~g~~~~a~~~~~~m~~ 391 (750)
.. .+.++..+..+...+...|+.++|.+++++..+ ..||... ...........++.+.+.+.++...+
T Consensus 254 ~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~------~~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk 327 (409)
T TIGR00540 254 NQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLK------KLGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAK 327 (409)
T ss_pred HCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHh------hCCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHH
Confidence 32 123788888999999999999999999999887 2345442 12222233456788899999988876
Q ss_pred CCCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCChHHHHHHHHHHh
Q 004480 392 AGVTPNT--ITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWT 460 (750)
Q Consensus 392 ~g~~p~~--~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~ 460 (750)
.. +-|. ....++...+.+.|++++|.+.|+........|+...+..+...+.+.|+.++|.+++++-.
T Consensus 328 ~~-p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l 397 (409)
T TIGR00540 328 NV-DDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSL 397 (409)
T ss_pred hC-CCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 52 2234 56678899999999999999999964444458999999999999999999999999999754
No 34
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.47 E-value=5e-10 Score=108.13 Aligned_cols=272 Identities=13% Similarity=0.059 Sum_probs=171.8
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCccHH--HHHHHHHhhc--CChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHHcCCh
Q 004480 265 VCGICGDYMKSRAIYEDLRSQNVTLNIY--VFNSLMNVNA--HDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNT 340 (750)
Q Consensus 265 ~~~~~g~~~~A~~~~~~m~~~g~~~~~~--~~~~ll~~~~--~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~ 340 (750)
.|.+.|+++.|++++.-+.+..-+.-.. +--+.+.... +++.+|.+.-+...... .-|+.....-.+.....|++
T Consensus 428 ~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~d-ryn~~a~~nkgn~~f~ngd~ 506 (840)
T KOG2003|consen 428 ELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNID-RYNAAALTNKGNIAFANGDL 506 (840)
T ss_pred HHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhccc-ccCHHHhhcCCceeeecCcH
Confidence 3677888888888887776543222111 1122333332 36666766666554332 22333333333444567888
Q ss_pred HHHHHHHHHHHHhhhcCCCccCHHHHHHH---HHHHHhccCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 004480 341 VLAQEIYGEVKHLEAKGVLKLDVFTYSTI---VKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQA 417 (750)
Q Consensus 341 ~~A~~~~~~~~~~~~~g~~~~~~~~~~~l---i~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a 417 (750)
++|.+.|++... .|...-.+| .-.+-..|++++|++.|-++..- +.-+..+...+.+.|.-..+..+|
T Consensus 507 dka~~~ykeal~--------ndasc~ealfniglt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqa 577 (840)
T KOG2003|consen 507 DKAAEFYKEALN--------NDASCTEALFNIGLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQA 577 (840)
T ss_pred HHHHHHHHHHHc--------CchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHH
Confidence 888888887753 233332222 22456778888888888776543 233566677777788888888888
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHhCChHHHHHHHHHHhhcccccccCCCCCCchhhhhhhhhhhcccccCCCCcc
Q 004480 418 MHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFV 497 (750)
Q Consensus 418 ~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 497 (750)
++++.+.... ++-|+.+.+-|.+.|-+.|+-..|++.+-.--..
T Consensus 578 ie~~~q~~sl-ip~dp~ilskl~dlydqegdksqafq~~ydsyry----------------------------------- 621 (840)
T KOG2003|consen 578 IELLMQANSL-IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRY----------------------------------- 621 (840)
T ss_pred HHHHHHhccc-CCCCHHHHHHHHHHhhcccchhhhhhhhhhcccc-----------------------------------
Confidence 8888776543 4557788888888888888888888776431110
Q ss_pred CCCccccccccCCCCccHHHHHHHHHHHHh--cHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH-HcCCCHHHHHHHHHHH
Q 004480 498 PNSHYSSFDKRFSFKPTTTTYNILMKACCT--DYYRVKALMNEMRTVGLSPNHISWTILIDAC-GGSGNVEGALQILKIM 574 (750)
Q Consensus 498 ~~~~~~~~~~~~~~~p~~~~~~~li~~~~~--~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~-~~~g~~~~A~~~~~~m 574 (750)
++.|..+..-+-.-|.. =.+++...|++..- +.|+..-|-.+|..| .+.|++.+|..+++..
T Consensus 622 -------------fp~nie~iewl~ayyidtqf~ekai~y~ekaal--iqp~~~kwqlmiasc~rrsgnyqka~d~yk~~ 686 (840)
T KOG2003|consen 622 -------------FPCNIETIEWLAAYYIDTQFSEKAINYFEKAAL--IQPNQSKWQLMIASCFRRSGNYQKAFDLYKDI 686 (840)
T ss_pred -------------cCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHh--cCccHHHHHHHHHHHHHhcccHHHHHHHHHHH
Confidence 23344444444444443 35778888877665 578888888877555 4678888898888888
Q ss_pred HHCCCCCCHHHHHHHHHHHHHcCC
Q 004480 575 REDGMSPDVVAYTTAIKVCVRSKR 598 (750)
Q Consensus 575 ~~~g~~p~~~~~~~li~~~~~~g~ 598 (750)
.++ ++-|.....-|+..+...|.
T Consensus 687 hrk-fpedldclkflvri~~dlgl 709 (840)
T KOG2003|consen 687 HRK-FPEDLDCLKFLVRIAGDLGL 709 (840)
T ss_pred HHh-CccchHHHHHHHHHhccccc
Confidence 764 45577777777777776664
No 35
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.47 E-value=3.1e-10 Score=118.05 Aligned_cols=220 Identities=14% Similarity=0.036 Sum_probs=163.7
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCccH-------HHHHHHHHh
Q 004480 228 VREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNI-------YVFNSLMNV 300 (750)
Q Consensus 228 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~-------~~~~~ll~~ 300 (750)
...+...|+++.|...++++.+..+ -+...+..+...|.+.|++++|.+++..+.+.+..++. ..|..++..
T Consensus 160 a~l~l~~g~~~~Al~~l~~~~~~~P-~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~ 238 (398)
T PRK10747 160 VRIQLARNENHAARHGVDKLLEVAP-RHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQ 238 (398)
T ss_pred HHHHHHCCCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHH
Confidence 5567777888888888888877542 35667777788888888888888888888877654322 122233332
Q ss_pred h--cCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHHcCChHHHHHHHHHHHHhhhcCCCccCHHHHHHHHHHHHhccC
Q 004480 301 N--AHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKW 378 (750)
Q Consensus 301 ~--~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~g~~~~~~~~~~~li~~~~~~g~ 378 (750)
. ..+.+...++++.+.+. .+.++.....+...+...|+.++|.+++++..+ .++|... .++.+.+..++
T Consensus 239 ~~~~~~~~~l~~~w~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~------~~~~~~l--~~l~~~l~~~~ 309 (398)
T PRK10747 239 AMADQGSEGLKRWWKNQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLK------RQYDERL--VLLIPRLKTNN 309 (398)
T ss_pred HHHhcCHHHHHHHHHhCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh------cCCCHHH--HHHHhhccCCC
Confidence 1 12444555566655432 245788888899999999999999999988775 2445422 23444556699
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCChHHHHHHHHH
Q 004480 379 WQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRS 458 (750)
Q Consensus 379 ~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~ 458 (750)
.+++.+..+...+.. +-|...+..+...+.+.+++++|.+.|+...+. .|+..+|..+..++.+.|+.++|.+++++
T Consensus 310 ~~~al~~~e~~lk~~-P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~--~P~~~~~~~La~~~~~~g~~~~A~~~~~~ 386 (398)
T PRK10747 310 PEQLEKVLRQQIKQH-GDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQ--RPDAYDYAWLADALDRLHKPEEAAAMRRD 386 (398)
T ss_pred hHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 999999999988774 336777889999999999999999999999986 79999999999999999999999999987
Q ss_pred Hh
Q 004480 459 WT 460 (750)
Q Consensus 459 ~~ 460 (750)
-.
T Consensus 387 ~l 388 (398)
T PRK10747 387 GL 388 (398)
T ss_pred HH
Confidence 54
No 36
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.46 E-value=5.2e-08 Score=98.85 Aligned_cols=470 Identities=14% Similarity=0.134 Sum_probs=273.5
Q ss_pred hhhHHHHHHHHhhcCChHHHHHHHHHHHHhcCChhhHHhhhhHHHHHHHHHhhhhcCchhHHHHHHHHHHhcCCCccccc
Q 004480 71 NDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLELF 150 (750)
Q Consensus 71 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~p~~~~ 150 (750)
+..|...++.+.++|++..-...|+.++..= |-.- + ..++.-.+.-.-..|-++.++.+|++-++ +.|...
T Consensus 102 pRIwl~Ylq~l~~Q~~iT~tR~tfdrALraL--pvtq-H---~rIW~lyl~Fv~~~~lPets~rvyrRYLk--~~P~~~- 172 (835)
T KOG2047|consen 102 PRIWLDYLQFLIKQGLITRTRRTFDRALRAL--PVTQ-H---DRIWDLYLKFVESHGLPETSIRVYRRYLK--VAPEAR- 172 (835)
T ss_pred CHHHHHHHHHHHhcchHHHHHHHHHHHHHhC--chHh-h---ccchHHHHHHHHhCCChHHHHHHHHHHHh--cCHHHH-
Confidence 5567778889999999999999999998773 2110 0 01111112223467778899999999997 566431
Q ss_pred cchhhhhhHHHHHHhhccCcHHHHHHHHHHHHhCCCC-----CcccccHHHHHHHHHcCCChH------HHHHH-hhhCC
Q 004480 151 DGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLP-----VKELDEEFRIVQLCVNKPDVN------LAIRY-ACIVP 218 (750)
Q Consensus 151 ~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~-----~~~~~~~~~l~~~~~~~~~~~------~A~~~-~~~~~ 218 (750)
...+..|. ..+++++|.+.+...+..... +.+...|..+-....+.-+.- .-.+- ..+++
T Consensus 173 -eeyie~L~-------~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~rft 244 (835)
T KOG2047|consen 173 -EEYIEYLA-------KSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRRFT 244 (835)
T ss_pred -HHHHHHHH-------hccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcccCc
Confidence 22333333 389999999999887643211 445556666655555433322 22211 12223
Q ss_pred CC-cchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC----------------------CHHHH
Q 004480 219 RA-DILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICG----------------------DYMKS 275 (750)
Q Consensus 219 ~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g----------------------~~~~A 275 (750)
+. ...|++|.+.|.+.|.++.|..+|++....- ..+.-|+.+.++|.+.. +++-.
T Consensus 245 Dq~g~Lw~SLAdYYIr~g~~ekarDvyeeai~~v--~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~ 322 (835)
T KOG2047|consen 245 DQLGFLWCSLADYYIRSGLFEKARDVYEEAIQTV--MTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELH 322 (835)
T ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhh--eehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHH
Confidence 22 3789999999999999999999999987632 34444555555554321 12223
Q ss_pred HHHHHHHHhCCC-----------CccHHHHHHHHHhhcCChHHHHHHHHHHHHcCCCCC------HhhHHHHHHHHHHcC
Q 004480 276 RAIYEDLRSQNV-----------TLNIYVFNSLMNVNAHDLKFTLEVYKNMQKLGVMAD------MASYNILLKACCLAG 338 (750)
Q Consensus 276 ~~~~~~m~~~g~-----------~~~~~~~~~ll~~~~~~~~~a~~~~~~m~~~g~~~~------~~~~~~ll~~~~~~g 338 (750)
..-|+.+...+. +-++..|..-+..+.++..+-...|.+..+. +.|. ...|..+.+.|-..|
T Consensus 323 ~a~~e~lm~rr~~~lNsVlLRQn~~nV~eW~kRV~l~e~~~~~~i~tyteAv~~-vdP~ka~Gs~~~Lw~~faklYe~~~ 401 (835)
T KOG2047|consen 323 MARFESLMNRRPLLLNSVLLRQNPHNVEEWHKRVKLYEGNAAEQINTYTEAVKT-VDPKKAVGSPGTLWVEFAKLYENNG 401 (835)
T ss_pred HHHHHHHHhccchHHHHHHHhcCCccHHHHHhhhhhhcCChHHHHHHHHHHHHc-cCcccCCCChhhHHHHHHHHHHhcC
Confidence 334444433321 2244556666666666777777778777664 2222 235677888888999
Q ss_pred ChHHHHHHHHHHHHhhhcCCCccCHHHHHHHHHHHHhccCHHHHHHHHHHHHHCCCCC-----------------CHHHH
Q 004480 339 NTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTP-----------------NTITW 401 (750)
Q Consensus 339 ~~~~A~~~~~~~~~~~~~g~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p-----------------~~~~~ 401 (750)
+++.|..+|++..+..-.+ +..=..+|......=.+..+++.|+++.+......-.| +...|
T Consensus 402 ~l~~aRvifeka~~V~y~~-v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiW 480 (835)
T KOG2047|consen 402 DLDDARVIFEKATKVPYKT-VEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIW 480 (835)
T ss_pred cHHHHHHHHHHhhcCCccc-hHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHH
Confidence 9999999999876511000 00002334444444456677888888777665321111 12345
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCChHHHHHHHHHHhhcccccccCCCCCCchhhhhh
Q 004480 402 SSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISN 481 (750)
Q Consensus 402 ~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 481 (750)
...++.--..|-++....+++++.+..+--...+.|-.+ -+....-++++.+.|++-...
T Consensus 481 s~y~DleEs~gtfestk~vYdriidLriaTPqii~NyAm-fLEeh~yfeesFk~YErgI~L------------------- 540 (835)
T KOG2047|consen 481 SMYADLEESLGTFESTKAVYDRIIDLRIATPQIIINYAM-FLEEHKYFEESFKAYERGISL------------------- 540 (835)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHHhcCCHHHHHHHHH-HHHhhHHHHHHHHHHHcCCcc-------------------
Confidence 555666666777888888888888765432222222111 223455677788877652211
Q ss_pred hhhhhcccccCCCCccCCCccccccccCCCCccHH-HHHHHHHHH----Hh-cHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 004480 482 MEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTT-TYNILMKAC----CT-DYYRVKALMNEMRTVGLSPNHISWTILI 555 (750)
Q Consensus 482 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~-~~~~li~~~----~~-~~~~a~~l~~~m~~~~~~p~~~~~~~li 555 (750)
+. -|++. .|+.-+.-+ ++ .+++|..+|++..+ |++|...-+-.|+
T Consensus 541 ---------------------------Fk-~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~-~Cpp~~aKtiyLl 591 (835)
T KOG2047|consen 541 ---------------------------FK-WPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALD-GCPPEHAKTIYLL 591 (835)
T ss_pred ---------------------------CC-CccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh-cCCHHHHHHHHHH
Confidence 11 23333 455555444 33 68999999999999 7776554332222
Q ss_pred HH--HHcCCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 004480 556 DA--CGGSGNVEGALQILKIMREDGMSPD--VVAYTTAIKVCVRSKRLKQAFSLFEEMKH 611 (750)
Q Consensus 556 ~~--~~~~g~~~~A~~~~~~m~~~g~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 611 (750)
.+ =-+.|-...|+.++++.... +++. ...||..|.--...=-+.....+|++.++
T Consensus 592 YA~lEEe~GLar~amsiyerat~~-v~~a~~l~myni~I~kaae~yGv~~TR~iYekaIe 650 (835)
T KOG2047|consen 592 YAKLEEEHGLARHAMSIYERATSA-VKEAQRLDMYNIYIKKAAEIYGVPRTREIYEKAIE 650 (835)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHH
Confidence 22 23458888899999887543 3333 33566666533322223334444444443
No 37
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.42 E-value=1.7e-09 Score=112.64 Aligned_cols=79 Identities=11% Similarity=0.120 Sum_probs=44.7
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 004480 529 YYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQILKIMREDGMSPDVVAYTTAIKVCVRSKRLKQAFSLFEE 608 (750)
Q Consensus 529 ~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 608 (750)
.+++.+..+...+.. +-|...+..+...|.+.|++++|.+.|+...+. .|+...|..+...+.+.|+.++|.+++++
T Consensus 310 ~~~al~~~e~~lk~~-P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~--~P~~~~~~~La~~~~~~g~~~~A~~~~~~ 386 (398)
T PRK10747 310 PEQLEKVLRQQIKQH-GDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQ--RPDAYDYAWLADALDRLHKPEEAAAMRRD 386 (398)
T ss_pred hHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 334444444443331 123344555666666666666666666666653 56666666666666666666666666665
Q ss_pred HH
Q 004480 609 MK 610 (750)
Q Consensus 609 m~ 610 (750)
-.
T Consensus 387 ~l 388 (398)
T PRK10747 387 GL 388 (398)
T ss_pred HH
Confidence 43
No 38
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.42 E-value=4.6e-07 Score=92.35 Aligned_cols=398 Identities=11% Similarity=0.059 Sum_probs=269.2
Q ss_pred HHHHHHHHhCCCCCcccccHHHHHHHHHcCCChHHHHHHhhhCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 004480 175 VGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSP 254 (750)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 254 (750)
..++++.++.- |+++..|.. .....+++.|.-++.+...--....-|.-+|++..-|+.|.++++...+. ++-
T Consensus 366 ~RVlRKALe~i--P~sv~LWKa----AVelE~~~darilL~rAveccp~s~dLwlAlarLetYenAkkvLNkaRe~-ipt 438 (913)
T KOG0495|consen 366 KRVLRKALEHI--PRSVRLWKA----AVELEEPEDARILLERAVECCPQSMDLWLALARLETYENAKKVLNKAREI-IPT 438 (913)
T ss_pred HHHHHHHHHhC--CchHHHHHH----HHhccChHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHhh-CCC
Confidence 34455555433 555444432 23334455555554443211112223444566777888899999888774 444
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHH----HhCCCCccHHHHHHHHHhh--cCChHHHHHHHHHHHHcCCCC--CHhh
Q 004480 255 NMYICRTIIDVCGICGDYMKSRAIYEDL----RSQNVTLNIYVFNSLMNVN--AHDLKFTLEVYKNMQKLGVMA--DMAS 326 (750)
Q Consensus 255 ~~~~~~~li~~~~~~g~~~~A~~~~~~m----~~~g~~~~~~~~~~ll~~~--~~~~~~a~~~~~~m~~~g~~~--~~~~ 326 (750)
+..+|-+-...=-.+|+.+....++++- ...|+..+..-|-.--..+ +|..-.+..+....+.-|+.- --.|
T Consensus 439 d~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~~t 518 (913)
T KOG0495|consen 439 DREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKST 518 (913)
T ss_pred ChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhH
Confidence 6667766666667788888888887654 3557777766665444432 366666777777777766543 2457
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHhhhcCCCccCHHHHHHHHHHHHhccCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 004480 327 YNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLIN 406 (750)
Q Consensus 327 ~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~g~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~ 406 (750)
|+.-...|.+.+.++-|..+|....+. ++-+...|......=-..|..++...+|++.... ++-....|-....
T Consensus 519 w~~da~~~~k~~~~~carAVya~alqv-----fp~k~slWlra~~~ek~hgt~Esl~Allqkav~~-~pkae~lwlM~ak 592 (913)
T KOG0495|consen 519 WLDDAQSCEKRPAIECARAVYAHALQV-----FPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQ-CPKAEILWLMYAK 592 (913)
T ss_pred HhhhHHHHHhcchHHHHHHHHHHHHhh-----ccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHh-CCcchhHHHHHHH
Confidence 888888888999999999999888763 4456667888777777788899999999998876 3335566777777
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCChHHHHHHHHHHhhcccccccCCCCCCchhhhhhhhhhh
Q 004480 407 ACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKD 486 (750)
Q Consensus 407 ~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 486 (750)
.+...|++..|..++....+.. +-+...|-.-+..-..+.++++|..+|.+....
T Consensus 593 e~w~agdv~~ar~il~~af~~~-pnseeiwlaavKle~en~e~eraR~llakar~~------------------------ 647 (913)
T KOG0495|consen 593 EKWKAGDVPAARVILDQAFEAN-PNSEEIWLAAVKLEFENDELERARDLLAKARSI------------------------ 647 (913)
T ss_pred HHHhcCCcHHHHHHHHHHHHhC-CCcHHHHHHHHHHhhccccHHHHHHHHHHHhcc------------------------
Confidence 7888899999999999888764 336778888888888899999999999876543
Q ss_pred cccccCCCCccCCCccccccccCCCCccHHHHH--HHHHHHHhcHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHcCCC
Q 004480 487 KQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYN--ILMKACCTDYYRVKALMNEMRTVGLSPNH-ISWTILIDACGGSGN 563 (750)
Q Consensus 487 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~--~li~~~~~~~~~a~~l~~~m~~~~~~p~~-~~~~~li~~~~~~g~ 563 (750)
.|+...|. .-+.-|..+.++|.+++++..+. -|+. ..|-.+...+-+.++
T Consensus 648 -------------------------sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~--fp~f~Kl~lmlGQi~e~~~~ 700 (913)
T KOG0495|consen 648 -------------------------SGTERVWMKSANLERYLDNVEEALRLLEEALKS--FPDFHKLWLMLGQIEEQMEN 700 (913)
T ss_pred -------------------------CCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh--CCchHHHHHHHhHHHHHHHH
Confidence 34444443 33334556778888888877774 3443 466677777777777
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 004480 564 VEGALQILKIMREDGMSPDVVAYTTAIKVCVRSKRLKQAFSLFEEMKHYQIQPNLVTYITLLRARSRYGSLHEVQQ 639 (750)
Q Consensus 564 ~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~~~~ 639 (750)
++.|...|..=.+. ++-.+..|-.|.+.=-+.|.+-+|..++++..-.+ .-|...|-..|+.=.|.|+.+.|+.
T Consensus 701 ie~aR~aY~~G~k~-cP~~ipLWllLakleEk~~~~~rAR~ildrarlkN-Pk~~~lwle~Ir~ElR~gn~~~a~~ 774 (913)
T KOG0495|consen 701 IEMAREAYLQGTKK-CPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKN-PKNALLWLESIRMELRAGNKEQAEL 774 (913)
T ss_pred HHHHHHHHHhcccc-CCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcC-CCcchhHHHHHHHHHHcCCHHHHHH
Confidence 77777777655442 22235566666666677778888888888876542 2367778888888888888776554
No 39
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.41 E-value=7.2e-11 Score=120.23 Aligned_cols=200 Identities=13% Similarity=0.147 Sum_probs=131.1
Q ss_pred hhCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCccHHH
Q 004480 215 CIVPRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSP-NMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYV 293 (750)
Q Consensus 215 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~ 293 (750)
...|..+.+|+.+...|.-+++.+.|++.|++..+ +.| ...+|+.+..-+.....+|.|...|+..+ ..|...
T Consensus 415 ~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQ--ldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al----~~~~rh 488 (638)
T KOG1126|consen 415 DTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQ--LDPRFAYAYTLLGHESIATEEFDKAMKSFRKAL----GVDPRH 488 (638)
T ss_pred hhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhc--cCCccchhhhhcCChhhhhHHHHhHHHHHHhhh----cCCchh
Confidence 33455567777777777777777777777777766 334 45677777776777777777777777654 334455
Q ss_pred HHHHHH---h--hcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHHcCChHHHHHHHHHHHHhhhcCCCccCHHHHHH
Q 004480 294 FNSLMN---V--NAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYST 368 (750)
Q Consensus 294 ~~~ll~---~--~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~g~~~~~~~~~~~ 368 (750)
||+.-- . ..++++.|+--|....+-+ +-+.+....+...+.+.|+.|+|++++++...+. +.|+..--.
T Consensus 489 YnAwYGlG~vy~Kqek~e~Ae~~fqkA~~IN-P~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld-----~kn~l~~~~ 562 (638)
T KOG1126|consen 489 YNAWYGLGTVYLKQEKLEFAEFHFQKAVEIN-PSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLD-----PKNPLCKYH 562 (638)
T ss_pred hHHHHhhhhheeccchhhHHHHHHHhhhcCC-ccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcC-----CCCchhHHH
Confidence 554433 1 2245666666666665543 3455566667777778888888888888877642 234444444
Q ss_pred HHHHHHhccCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 004480 369 IVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQA 427 (750)
Q Consensus 369 li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 427 (750)
.+..+...+++++|+..++++.+. ++-+...|..+...|.+.|+.+.|+.-|..+.+.
T Consensus 563 ~~~il~~~~~~~eal~~LEeLk~~-vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~l 620 (638)
T KOG1126|consen 563 RASILFSLGRYVEALQELEELKEL-VPQESSVFALLGKIYKRLGNTDLALLHFSWALDL 620 (638)
T ss_pred HHHHHHhhcchHHHHHHHHHHHHh-CcchHHHHHHHHHHHHHHccchHHHHhhHHHhcC
Confidence 555677778888888888888775 2224566777777888888888888777777654
No 40
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.41 E-value=2.3e-12 Score=128.07 Aligned_cols=156 Identities=15% Similarity=0.092 Sum_probs=26.2
Q ss_pred HhhhhcCchhHHHHHHHHHHhcCCCccccccchhhhhhHHHHHHhhccCcHHHHHHHHHHHHhCCCCCcccccHHHHHHH
Q 004480 121 VKSIREGRIDCVVGVLKKLNELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQL 200 (750)
Q Consensus 121 ~~~~~~g~~~~A~~~l~~~~~~~~~p~~~~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~ 200 (750)
..+.+.|++++|++++.+.......|+... .+..+...+.. .+++++|++.++++...+ +.....+..++..
T Consensus 16 ~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~---~~~~~a~La~~---~~~~~~A~~ay~~l~~~~--~~~~~~~~~l~~l 87 (280)
T PF13429_consen 16 RLLYQRGDYEKALEVLKKAAQKIAPPDDPE---YWRLLADLAWS---LGDYDEAIEAYEKLLASD--KANPQDYERLIQL 87 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccc---ccccccccccc---cccccccccccccccccc--ccccccccccccc
Confidence 336688899999998866554322344442 22233322222 688888888888887755 3344444444444
Q ss_pred HHcCCChHHHHHHhhhC---CCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhCC-CCCCHHHHHHHHHHHHhcCCHHHHH
Q 004480 201 CVNKPDVNLAIRYACIV---PRADILFCNFVREFGKKRDLVSALRAYDASKKHL-SSPNMYICRTIIDVCGICGDYMKSR 276 (750)
Q Consensus 201 ~~~~~~~~~A~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~li~~~~~~g~~~~A~ 276 (750)
...+++++|.+++... .++...+...+..+.+.++++++..+++.+.... .+.+...|..+...+.+.|+.++|+
T Consensus 88 -~~~~~~~~A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~ 166 (280)
T PF13429_consen 88 -LQDGDPEEALKLAEKAYERDGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKAL 166 (280)
T ss_dssp -------------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHH
T ss_pred -cccccccccccccccccccccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHH
Confidence 4555555555544332 1223334444455555555555555555544322 1234444555555555555555555
Q ss_pred HHHHHHHhC
Q 004480 277 AIYEDLRSQ 285 (750)
Q Consensus 277 ~~~~~m~~~ 285 (750)
+.|++..+.
T Consensus 167 ~~~~~al~~ 175 (280)
T PF13429_consen 167 RDYRKALEL 175 (280)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHc
Confidence 555555443
No 41
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.39 E-value=3e-12 Score=127.23 Aligned_cols=250 Identities=16% Similarity=0.129 Sum_probs=99.0
Q ss_pred ccCcHHHHHHHHHHHHhCCCCCcccccHHHHHHHHHcCCChHHHHHHhhhCC----CCcchHHHHHHHHHhcCCHHHHHH
Q 004480 167 DSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVP----RADILFCNFVREFGKKRDLVSALR 242 (750)
Q Consensus 167 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~----~~~~~~~~l~~~~~~~g~~~~A~~ 242 (750)
..|++++|++++++.......|++...|..++..+...++.+.|+..++.+. .+...+..++.. ...+++++|.+
T Consensus 20 ~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~~~~~~~~l~~l-~~~~~~~~A~~ 98 (280)
T PF13429_consen 20 QRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKANPQDYERLIQL-LQDGDPEEALK 98 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc
Confidence 3678888888775544332235555555545555545555555555544431 112233333333 34455555555
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCccHHHHHHHHHhhcCChHHHHHHHHHHHHc-CCC
Q 004480 243 AYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKFTLEVYKNMQKL-GVM 321 (750)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~a~~~~~~m~~~-g~~ 321 (750)
++....+.. ++...+...+..+.+.++++++.++++ .+... ..+
T Consensus 99 ~~~~~~~~~--~~~~~l~~~l~~~~~~~~~~~~~~~l~---------------------------------~~~~~~~~~ 143 (280)
T PF13429_consen 99 LAEKAYERD--GDPRYLLSALQLYYRLGDYDEAEELLE---------------------------------KLEELPAAP 143 (280)
T ss_dssp ---------------------H-HHHTT-HHHHHHHHH---------------------------------HHHH-T---
T ss_pred ccccccccc--cccchhhHHHHHHHHHhHHHHHHHHHH---------------------------------HHHhccCCC
Confidence 444433221 233334444444444555555544444 44322 134
Q ss_pred CCHhhHHHHHHHHHHcCChHHHHHHHHHHHHhhhcCCCcc-CHHHHHHHHHHHHhccCHHHHHHHHHHHHHCCCCCCHHH
Q 004480 322 ADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKL-DVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTIT 400 (750)
Q Consensus 322 ~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~g~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~ 400 (750)
.+...|..+...+.+.|+.++|.+.+++..+. .| |....+.++..+...|+.+++..++....... +.|...
T Consensus 144 ~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~------~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~ 216 (280)
T PF13429_consen 144 DSARFWLALAEIYEQLGDPDKALRDYRKALEL------DPDDPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDL 216 (280)
T ss_dssp T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-------TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCH
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc------CCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHH
Confidence 57777888888888999999999999998873 45 46778888888999999998888888877653 345566
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCChHHHHHHHHHHh
Q 004480 401 WSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWT 460 (750)
Q Consensus 401 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~ 460 (750)
+..+..+|...|+.++|+..|++..+.. +.|..+...+.+++.+.|+.++|.++.++..
T Consensus 217 ~~~la~~~~~lg~~~~Al~~~~~~~~~~-p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~ 275 (280)
T PF13429_consen 217 WDALAAAYLQLGRYEEALEYLEKALKLN-PDDPLWLLAYADALEQAGRKDEALRLRRQAL 275 (280)
T ss_dssp CHHHHHHHHHHT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHT----------------
T ss_pred HHHHHHHhcccccccccccccccccccc-ccccccccccccccccccccccccccccccc
Confidence 7888889999999999999999988763 5577888888889999999999998887654
No 42
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.39 E-value=1.5e-09 Score=113.69 Aligned_cols=284 Identities=10% Similarity=0.007 Sum_probs=145.9
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCccHHHHHHHHHhhcCChHHHHHH
Q 004480 233 KKRDLVSALRAYDASKKHLSSPN-MYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKFTLEV 311 (750)
Q Consensus 233 ~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~a~~~ 311 (750)
..|+++.|.+.+.+..+.. |+ ...+-....+..+.|+++.|.+.|.+..+..
T Consensus 96 ~~g~~~~A~~~l~~~~~~~--~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~------------------------- 148 (409)
T TIGR00540 96 AEGDYAKAEKLIAKNADHA--AEPVLNLIKAAEAAQQRGDEARANQHLEEAAELA------------------------- 148 (409)
T ss_pred hCCCHHHHHHHHHHHhhcC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-------------------------
Confidence 4566666666666655432 22 2223333445555666666666666654431
Q ss_pred HHHHHHcCCCCCH--hhHHHHHHHHHHcCChHHHHHHHHHHHHhhhcCCCccCHHHHHHHHHHHHhccCHHHHHHHHHHH
Q 004480 312 YKNMQKLGVMADM--ASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDM 389 (750)
Q Consensus 312 ~~~m~~~g~~~~~--~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~g~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m 389 (750)
|+. ...-.....+...|+++.|...++.+.+. -+-+...+..+...+...|++++|.+.+..+
T Consensus 149 ----------p~~~l~~~~~~a~l~l~~~~~~~Al~~l~~l~~~-----~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l 213 (409)
T TIGR00540 149 ----------GNDNILVEIARTRILLAQNELHAARHGVDKLLEM-----APRHKEVLKLAEEAYIRSGAWQALDDIIDNM 213 (409)
T ss_pred ----------CcCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-----CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 222 12222344455555666666655555541 1223444555555556666666666666665
Q ss_pred HHCCCCCCHHHHH-HHHHHH---HhcCCHHHHHHHHHHHHHcC---CCCCHHHHHHHHHHHHHhCChHHHHHHHHHHhhc
Q 004480 390 LSAGVTPNTITWS-SLINAC---ANAGLVEQAMHLFEEMLQAG---CEPNSQCCNILLQACVEACQFDRAFRLFRSWTLS 462 (750)
Q Consensus 390 ~~~g~~p~~~~~~-~li~~~---~~~g~~~~a~~~~~~m~~~~---~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~ 462 (750)
.+.++. +...+. .-..++ ...+..+++.+.+..+.+.. .+.+...+..+...+...|+.++|.+++++..+.
T Consensus 214 ~k~~~~-~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~ 292 (409)
T TIGR00540 214 AKAGLF-DDEEFADLEQKAEIGLLDEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKK 292 (409)
T ss_pred HHcCCC-CHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhh
Confidence 555432 222221 111111 11122222222333333321 0125555666666666666666666666665543
Q ss_pred ccccccCCCCCCchhhhhhhhhhhcccccCCCCccCCCccccccccCCCCccHHHH-HHHHHHH----HhcHHHHHHHHH
Q 004480 463 KTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTY-NILMKAC----CTDYYRVKALMN 537 (750)
Q Consensus 463 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~-~~li~~~----~~~~~~a~~l~~ 537 (750)
. ||.... ..++..+ .++.+.+.+.++
T Consensus 293 ~-------------------------------------------------pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e 323 (409)
T TIGR00540 293 L-------------------------------------------------GDDRAISLPLCLPIPRLKPEDNEKLEKLIE 323 (409)
T ss_pred C-------------------------------------------------CCcccchhHHHHHhhhcCCCChHHHHHHHH
Confidence 2 111100 0011111 123345555555
Q ss_pred HHHHcCCCCC-H--HHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 004480 538 EMRTVGLSPN-H--ISWTILIDACGGSGNVEGALQILKIMREDGMSPDVVAYTTAIKVCVRSKRLKQAFSLFEEMK 610 (750)
Q Consensus 538 ~m~~~~~~p~-~--~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 610 (750)
...+. .|+ . ....++.+.|.+.|++++|.+.|+........||...+..+...+.+.|+.++|.++|++..
T Consensus 324 ~~lk~--~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l 397 (409)
T TIGR00540 324 KQAKN--VDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSL 397 (409)
T ss_pred HHHHh--CCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 55543 233 3 45567788888888888888888854333347888778888888888888888888888753
No 43
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.39 E-value=8e-09 Score=101.34 Aligned_cols=361 Identities=11% Similarity=0.010 Sum_probs=212.4
Q ss_pred hhhHHHHHHHHhhcCChHHHHHHHHHHHHhcCC-hhhHHhhhhHHHHHHHHHhhhhcCchhHHHHHHHHHHhcCCCcccc
Q 004480 71 NDYYADMASKLAKDGRLEEFAMIVESVVVSEGN-VSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLEL 149 (750)
Q Consensus 71 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~p~~~ 149 (750)
...+...+..+-++|.|++|+..+.+++...++ |..| ++....|...|+|+++.+.-.++++ +.|+
T Consensus 115 A~~lK~~GN~~f~~kkY~eAIkyY~~AI~l~p~epiFY---------sNraAcY~~lgd~~~Vied~TkALE--l~P~-- 181 (606)
T KOG0547|consen 115 AAALKTKGNKFFRNKKYDEAIKYYTQAIELCPDEPIFY---------SNRAACYESLGDWEKVIEDCTKALE--LNPD-- 181 (606)
T ss_pred HHHHHhhhhhhhhcccHHHHHHHHHHHHhcCCCCchhh---------hhHHHHHHHHhhHHHHHHHHHHHhh--cCcH--
Confidence 445666778888999999999999999999665 4433 3444458899999999999999887 6663
Q ss_pred ccchhhhhhHHHHHHhhccCcHHHHHHHHHHHHhCCCCCcccccHHHHHHHHHcCCChHHHHHHhhhCCCCcchHHHHHH
Q 004480 150 FDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRADILFCNFVR 229 (750)
Q Consensus 150 ~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~l~~ 229 (750)
..-+|.+-+.+.-..|++++|+.=+.-..-.+...+. .....+-+.+-..+. ..+.+-+..-.+......+.|.
T Consensus 182 ----Y~KAl~RRA~A~E~lg~~~eal~D~tv~ci~~~F~n~-s~~~~~eR~Lkk~a~-~ka~e~~k~nr~p~lPS~~fi~ 255 (606)
T KOG0547|consen 182 ----YVKALLRRASAHEQLGKFDEALFDVTVLCILEGFQNA-SIEPMAERVLKKQAM-KKAKEKLKENRPPVLPSATFIA 255 (606)
T ss_pred ----HHHHHHHHHHHHHhhccHHHHHHhhhHHHHhhhcccc-hhHHHHHHHHHHHHH-HHHHHhhcccCCCCCCcHHHHH
Confidence 3456666556655678888776433322211111111 101111111111111 1122222210011111222222
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc-CCHHHHHHHHHHHHhCC-CCcc-------------HHHH
Q 004480 230 EFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGIC-GDYMKSRAIYEDLRSQN-VTLN-------------IYVF 294 (750)
Q Consensus 230 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~-g~~~~A~~~~~~m~~~g-~~~~-------------~~~~ 294 (750)
.|...=..+-- ..+...+.+.|...-..+-..+... ..+..|...+.+-.... ..++ ...+
T Consensus 256 syf~sF~~~~~----~~~~~~~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~ 331 (606)
T KOG0547|consen 256 SYFGSFHADPK----PLFDNKSDKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLL 331 (606)
T ss_pred HHHhhcccccc----ccccCCCccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHH
Confidence 22211000000 0000000001111111111111110 12333333332211100 0011 1122
Q ss_pred HHHHHhhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHHcCChHHHHHHHHHHHHhhhcCCCccCHHHHHHHHHHHH
Q 004480 295 NSLMNVNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFA 374 (750)
Q Consensus 295 ~~ll~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~g~~~~~~~~~~~li~~~~ 374 (750)
...+....|+...+.+-|+..++.... +...|--+..+|....+.++-...|.....+. +-|..+|..-...+.
T Consensus 332 ~gtF~fL~g~~~~a~~d~~~~I~l~~~-~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ld-----p~n~dvYyHRgQm~f 405 (606)
T KOG0547|consen 332 RGTFHFLKGDSLGAQEDFDAAIKLDPA-FNSLYIKRAAAYADENQSEKMWKDFNKAEDLD-----PENPDVYYHRGQMRF 405 (606)
T ss_pred hhhhhhhcCCchhhhhhHHHHHhcCcc-cchHHHHHHHHHhhhhccHHHHHHHHHHHhcC-----CCCCchhHhHHHHHH
Confidence 233334568888899999998876432 22237778888999999999999999988742 345667877777788
Q ss_pred hccCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCChHHHHH
Q 004480 375 DAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFR 454 (750)
Q Consensus 375 ~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~ 454 (750)
-.+++++|..=|++.+..... ++..|..+.-+.-+.+++++++..|++..++ ++-.+..|+.....+...++++.|.+
T Consensus 406 lL~q~e~A~aDF~Kai~L~pe-~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k 483 (606)
T KOG0547|consen 406 LLQQYEEAIADFQKAISLDPE-NAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVK 483 (606)
T ss_pred HHHHHHHHHHHHHHHhhcChh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHH
Confidence 889999999999999987533 6777777777778899999999999999886 45577889999999999999999999
Q ss_pred HHHHHhhc
Q 004480 455 LFRSWTLS 462 (750)
Q Consensus 455 ~~~~~~~~ 462 (750)
.|+.....
T Consensus 484 ~YD~ai~L 491 (606)
T KOG0547|consen 484 QYDKAIEL 491 (606)
T ss_pred HHHHHHhh
Confidence 99886643
No 44
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.38 E-value=4.9e-09 Score=102.15 Aligned_cols=333 Identities=12% Similarity=0.041 Sum_probs=200.2
Q ss_pred HHHHHHHHhhcCChHHHHHHHHHHHHhcCChhhHHhhhhHHHHHH-----------------------HHHhhhhcCchh
Q 004480 74 YADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVAS-----------------------GIVKSIREGRID 130 (750)
Q Consensus 74 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~-----------------------~~~~~~~~g~~~ 130 (750)
+...+-.+-+.|....|+..|...+.. -|-.|..++.+.-+.. +..++....+.+
T Consensus 167 lYL~Gvv~k~~~~~s~A~~sfv~~v~~--~P~~W~AWleL~~lit~~e~~~~l~~~l~~~~h~M~~~F~~~a~~el~q~~ 244 (559)
T KOG1155|consen 167 LYLYGVVLKELGLLSLAIDSFVEVVNR--YPWFWSAWLELSELITDIEILSILVVGLPSDMHWMKKFFLKKAYQELHQHE 244 (559)
T ss_pred HHHHHHHHHhhchHHHHHHHHHHHHhc--CCcchHHHHHHHHhhchHHHHHHHHhcCcccchHHHHHHHHHHHHHHHHHH
Confidence 334455666778888888888777765 5666665544332211 112223333445
Q ss_pred HHHHHHHHHHhcCCCccccccchhhhhhHHHHHHhhccCcHHHHHHHHHHHHhCCC-CCcccccHHHHHHHHHcCCChH-
Q 004480 131 CVVGVLKKLNELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRL-PVKELDEEFRIVQLCVNKPDVN- 208 (750)
Q Consensus 131 ~A~~~l~~~~~~~~~p~~~~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~- 208 (750)
++.+-++.....|...+. .+-+.+.+ ..-.+.++++|+.+|+++++... ..++..+++.++.+-....++.
T Consensus 245 e~~~k~e~l~~~gf~~~~-----~i~~~~A~--~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~skLs~ 317 (559)
T KOG1155|consen 245 EALQKKERLSSVGFPNSM-----YIKTQIAA--ASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSKLSY 317 (559)
T ss_pred HHHHHHHHHHhccCCccH-----HHHHHHHH--HHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHHHHH
Confidence 555555555554433222 11122211 12235677777777777766531 1234444444443332222221
Q ss_pred HHHHHhhhCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 004480 209 LAIRYACIVPRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVT 288 (750)
Q Consensus 209 ~A~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 288 (750)
.|..++..-.=.+.+.+.+.+.|+-+++.++|+..|++..+.++ ....+|+.+..-|....+...|++-|+..++-.
T Consensus 318 LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp-~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~-- 394 (559)
T KOG1155|consen 318 LAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNP-KYLSAWTLMGHEYVEMKNTHAAIESYRRAVDIN-- 394 (559)
T ss_pred HHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCc-chhHHHHHhhHHHHHhcccHHHHHHHHHHHhcC--
Confidence 23333333233345666666677777777777777777766332 234466666666666666666666666655432
Q ss_pred ccHHHHHHHHHhhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHHcCChHHHHHHHHHHHHhhhcCCCccCHHHHHH
Q 004480 289 LNIYVFNSLMNVNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYST 368 (750)
Q Consensus 289 ~~~~~~~~ll~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~g~~~~~~~~~~~ 368 (750)
+.|-..|-.|..+|.-.+...=|+-.|++.... -+-|...|.+
T Consensus 395 --------------------------------p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~-----kPnDsRlw~a 437 (559)
T KOG1155|consen 395 --------------------------------PRDYRAWYGLGQAYEIMKMHFYALYYFQKALEL-----KPNDSRLWVA 437 (559)
T ss_pred --------------------------------chhHHHHhhhhHHHHHhcchHHHHHHHHHHHhc-----CCCchHHHHH
Confidence 456777778888888888888888888888763 2456788889
Q ss_pred HHHHHHhccCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc----C-CCC-CHHHHHHHHHH
Q 004480 369 IVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQA----G-CEP-NSQCCNILLQA 442 (750)
Q Consensus 369 li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----~-~~p-~~~~~~~ll~~ 442 (750)
|..+|.+.++.++|++.|......|-. +...+..|.+.|-+.++.++|...|.+-.+. | +.| .....--|..-
T Consensus 438 LG~CY~kl~~~~eAiKCykrai~~~dt-e~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~ 516 (559)
T KOG1155|consen 438 LGECYEKLNRLEEAIKCYKRAILLGDT-EGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEY 516 (559)
T ss_pred HHHHHHHhccHHHHHHHHHHHHhcccc-chHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHH
Confidence 999999999999999998888876633 5577888888888888888888888776652 3 222 12222224445
Q ss_pred HHHhCChHHHHHHH
Q 004480 443 CVEACQFDRAFRLF 456 (750)
Q Consensus 443 ~~~~g~~~~A~~~~ 456 (750)
+.+.+++++|...-
T Consensus 517 f~k~~~~~~As~Ya 530 (559)
T KOG1155|consen 517 FKKMKDFDEASYYA 530 (559)
T ss_pred HHhhcchHHHHHHH
Confidence 66677777775544
No 45
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.38 E-value=2.5e-10 Score=116.35 Aligned_cols=282 Identities=13% Similarity=0.114 Sum_probs=189.0
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC--CccHHHHHHHHHhhcCChHHHHHHH-
Q 004480 236 DLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNV--TLNIYVFNSLMNVNAHDLKFTLEVY- 312 (750)
Q Consensus 236 ~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~--~~~~~~~~~ll~~~~~~~~~a~~~~- 312 (750)
+..+|...|..+.+. +.-..++...+..+|...+++++|.++|+.+.+... .-+..+|.+.|.-....++ +..+
T Consensus 334 ~~~~A~~~~~klp~h-~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~--Ls~La 410 (638)
T KOG1126|consen 334 NCREALNLFEKLPSH-HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVA--LSYLA 410 (638)
T ss_pred HHHHHHHHHHhhHHh-cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHH--HHHHH
Confidence 567899999885553 323457788888999999999999999999886532 2356677777764443222 2112
Q ss_pred HHHHHcCCCCCHhhHHHHHHHHHHcCChHHHHHHHHHHHHhhhcCCCcc-CHHHHHHHHHHHHhccCHHHHHHHHHHHHH
Q 004480 313 KNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKL-DVFTYSTIVKVFADAKWWQMALKVKEDMLS 391 (750)
Q Consensus 313 ~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~g~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 391 (750)
+++.+.. +-.+.+|.++.+.|.-+++.+.|++.|++..+ +.| ...+|+.+..-+.....+|.|...|+..+.
T Consensus 411 q~Li~~~-~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQ------ldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~ 483 (638)
T KOG1126|consen 411 QDLIDTD-PNSPESWCALGNCFSLQKDHDTAIKCFKRAIQ------LDPRFAYAYTLLGHESIATEEFDKAMKSFRKALG 483 (638)
T ss_pred HHHHhhC-CCCcHHHHHhcchhhhhhHHHHHHHHHHHhhc------cCCccchhhhhcCChhhhhHHHHhHHHHHHhhhc
Confidence 2222221 44678888888888888888888888888877 445 677888888888888888888888888775
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCChHHHHHHHHHHhhcccccccCCC
Q 004480 392 AGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGED 471 (750)
Q Consensus 392 ~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 471 (750)
.... +-..|.-+.-.|.+.++++.|+-.|++..+-+ +-+.+....+...+.+.|+.|+|++++++......
T Consensus 484 ~~~r-hYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~IN-P~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~------- 554 (638)
T KOG1126|consen 484 VDPR-HYNAWYGLGTVYLKQEKLEFAEFHFQKAVEIN-PSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDP------- 554 (638)
T ss_pred CCch-hhHHHHhhhhheeccchhhHHHHHHHhhhcCC-ccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCC-------
Confidence 4211 23344456677888888888888888887653 34666677777788888888888888887553321
Q ss_pred CCCchhhhhhhhhhhcccccCCCCccCCCccccccccCCCCccHHHHHHHHHHHHhcHHHHHHHHHHHHHcCCCCCH-HH
Q 004480 472 YDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTDYYRVKALMNEMRTVGLSPNH-IS 550 (750)
Q Consensus 472 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~a~~l~~~m~~~~~~p~~-~~ 550 (750)
..|-.....+.+.....+.++|+..++++++ +.|+. ..
T Consensus 555 ---------------------------------------kn~l~~~~~~~il~~~~~~~eal~~LEeLk~--~vP~es~v 593 (638)
T KOG1126|consen 555 ---------------------------------------KNPLCKYHRASILFSLGRYVEALQELEELKE--LVPQESSV 593 (638)
T ss_pred ---------------------------------------CCchhHHHHHHHHHhhcchHHHHHHHHHHHH--hCcchHHH
Confidence 1222333333333344566666666666666 34443 34
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHC
Q 004480 551 WTILIDACGGSGNVEGALQILKIMRED 577 (750)
Q Consensus 551 ~~~li~~~~~~g~~~~A~~~~~~m~~~ 577 (750)
|-.+...|-+.|+.+.|+.-|..|.+.
T Consensus 594 ~~llgki~k~~~~~~~Al~~f~~A~~l 620 (638)
T KOG1126|consen 594 FALLGKIYKRLGNTDLALLHFSWALDL 620 (638)
T ss_pred HHHHHHHHHHHccchHHHHhhHHHhcC
Confidence 555566666666666666666666654
No 46
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.38 E-value=1.1e-07 Score=92.96 Aligned_cols=416 Identities=12% Similarity=0.105 Sum_probs=298.9
Q ss_pred cCcHHHHHHHHHHHHhCCCCCcccccHHHHHHHHHcCCChHHHHHHhhh----CCCCcchHHHHHHHHHhcCCHHHHHHH
Q 004480 168 SGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACI----VPRADILFCNFVREFGKKRDLVSALRA 243 (750)
Q Consensus 168 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~----~~~~~~~~~~l~~~~~~~g~~~~A~~~ 243 (750)
++++..|.++|++.+... ..+...|..-+..-.+...+..|.-++.. +|.....|...+.+=-..|++..|.++
T Consensus 86 q~e~~RARSv~ERALdvd--~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWyKY~ymEE~LgNi~gaRqi 163 (677)
T KOG1915|consen 86 QKEIQRARSVFERALDVD--YRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWYKYIYMEEMLGNIAGARQI 163 (677)
T ss_pred HHHHHHHHHHHHHHHhcc--cccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHHHHHHHHHHhcccHHHHHH
Confidence 678889999999988754 56677777777777788888888887766 577778888888888888999999999
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCccHHHHHHHHHh--hcCChHHHHHHHHHHHHc-CC
Q 004480 244 YDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNV--NAHDLKFTLEVYKNMQKL-GV 320 (750)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~--~~~~~~~a~~~~~~m~~~-g~ 320 (750)
|++-.+ ..|+..+|++.|+.=.+...++.|..+|+..+-. .|++.+|--..+. ..|....+..+|....+. |-
T Consensus 164 ferW~~--w~P~eqaW~sfI~fElRykeieraR~IYerfV~~--HP~v~~wikyarFE~k~g~~~~aR~VyerAie~~~~ 239 (677)
T KOG1915|consen 164 FERWME--WEPDEQAWLSFIKFELRYKEIERARSIYERFVLV--HPKVSNWIKYARFEEKHGNVALARSVYERAIEFLGD 239 (677)
T ss_pred HHHHHc--CCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhee--cccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhh
Confidence 998876 6799999999999988999999999999998754 5888888766664 457888888998887664 21
Q ss_pred -CCCHhhHHHHHHHHHHcCChHHHHHHHHHHHHhhhcCCCccC--HHHHHHHHHHHHhccC---HHHHHH-----HHHHH
Q 004480 321 -MADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLD--VFTYSTIVKVFADAKW---WQMALK-----VKEDM 389 (750)
Q Consensus 321 -~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~g~~~~~--~~~~~~li~~~~~~g~---~~~a~~-----~~~~m 389 (750)
..+...+.+....=.++..++.|.-+|+-.... ++.+ ...|..+...=-+.|+ .++++- -++.+
T Consensus 240 d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~-----~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~ 314 (677)
T KOG1915|consen 240 DEEAEILFVAFAEFEERQKEYERARFIYKYALDH-----IPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKE 314 (677)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----cCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHH
Confidence 112223333333334567788888888877653 2223 3344444443334444 344432 23344
Q ss_pred HHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH--HHHHHHHH-----HH---HHhCChHHHHHHHHHH
Q 004480 390 LSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNS--QCCNILLQ-----AC---VEACQFDRAFRLFRSW 459 (750)
Q Consensus 390 ~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~--~~~~~ll~-----~~---~~~g~~~~A~~~~~~~ 459 (750)
.+.+ +-|-.+|-..++.-...|+.+...++|++.... ++|-. ..|.-.|- +| ....+.+.+.++|+..
T Consensus 315 v~~n-p~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~ 392 (677)
T KOG1915|consen 315 VSKN-PYNYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQAC 392 (677)
T ss_pred HHhC-CCCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 4443 447778888888888889999999999999875 45522 12222221 11 2457888888888876
Q ss_pred hhcccccccCCCCCCchhhhhhhhhhhcccccCCCCccCCCccccccccCCCCccHHHHHHHHHHHH------hcHHHHH
Q 004480 460 TLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACC------TDYYRVK 533 (750)
Q Consensus 460 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~------~~~~~a~ 533 (750)
.+. ++....|+.-+--.|+ .++..|.
T Consensus 393 l~l------------------------------------------------IPHkkFtFaKiWlmyA~feIRq~~l~~AR 424 (677)
T KOG1915|consen 393 LDL------------------------------------------------IPHKKFTFAKIWLMYAQFEIRQLNLTGAR 424 (677)
T ss_pred Hhh------------------------------------------------cCcccchHHHHHHHHHHHHHHHcccHHHH
Confidence 652 2445566666555554 2677888
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC
Q 004480 534 ALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQILKIMREDGMSPDVVAYTTAIKVCVRSKRLKQAFSLFEEMKHYQ 613 (750)
Q Consensus 534 ~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 613 (750)
+++...+ |..|-..+|...|..=.+.+.+|.+..++++.++.+. -|..+|.-....=-..|+.+.|..+|.-.++..
T Consensus 425 kiLG~AI--G~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~P-e~c~~W~kyaElE~~LgdtdRaRaifelAi~qp 501 (677)
T KOG1915|consen 425 KILGNAI--GKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFSP-ENCYAWSKYAELETSLGDTDRARAIFELAISQP 501 (677)
T ss_pred HHHHHHh--ccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcCh-HhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCc
Confidence 8887765 4689999999999999999999999999999998642 267788888877778899999999999998643
Q ss_pred -CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHc
Q 004480 614 -IQPNLVTYITLLRARSRYGSLHEVQQCLAVYQDMWKA 650 (750)
Q Consensus 614 -~~p~~~t~~~li~~~~~~g~~~~~~~a~~~~~~m~~~ 650 (750)
+......|.+.|+.=...|..+. +..+|+++++.
T Consensus 502 ~ldmpellwkaYIdFEi~~~E~ek---aR~LYerlL~r 536 (677)
T KOG1915|consen 502 ALDMPELLWKAYIDFEIEEGEFEK---ARALYERLLDR 536 (677)
T ss_pred ccccHHHHHHHhhhhhhhcchHHH---HHHHHHHHHHh
Confidence 22345667777777667776554 66788888864
No 47
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.37 E-value=3e-08 Score=96.79 Aligned_cols=282 Identities=11% Similarity=0.098 Sum_probs=203.5
Q ss_pred ccCcHHHHHHHHHHHHhCCCCCcccccHHHHHHHHHcCCChHHHHHHhhhCCCCcchHH--HHHHHHHhcCCHHHHHHHH
Q 004480 167 DSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRADILFC--NFVREFGKKRDLVSALRAY 244 (750)
Q Consensus 167 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~--~l~~~~~~~g~~~~A~~~~ 244 (750)
+.|....|++.|...+... |-....|..|...+. +.+.+..+....|.+..... -+..+|....+.++++.-.
T Consensus 176 ~~~~~s~A~~sfv~~v~~~--P~~W~AWleL~~lit---~~e~~~~l~~~l~~~~h~M~~~F~~~a~~el~q~~e~~~k~ 250 (559)
T KOG1155|consen 176 ELGLLSLAIDSFVEVVNRY--PWFWSAWLELSELIT---DIEILSILVVGLPSDMHWMKKFFLKKAYQELHQHEEALQKK 250 (559)
T ss_pred hhchHHHHHHHHHHHHhcC--CcchHHHHHHHHhhc---hHHHHHHHHhcCcccchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4688888888888877644 767667766665553 34444444444454322222 2456677777888888888
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC--ccHHHHHHHHHhhcCChHHHHHHHHHHHHcCCCC
Q 004480 245 DASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVT--LNIYVFNSLMNVNAHDLKFTLEVYKNMQKLGVMA 322 (750)
Q Consensus 245 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~--~~~~~~~~ll~~~~~~~~~a~~~~~~m~~~g~~~ 322 (750)
+.....|..-+...-+....+.-...|+++|+.+|+++.+..+- -|..+|..++.+....-. +..+.+-...=-+-
T Consensus 251 e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~sk--Ls~LA~~v~~idKy 328 (559)
T KOG1155|consen 251 ERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSK--LSYLAQNVSNIDKY 328 (559)
T ss_pred HHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHH--HHHHHHHHHHhccC
Confidence 88888887555554444445556778999999999999887322 467788888776543221 22222211111134
Q ss_pred CHhhHHHHHHHHHHcCChHHHHHHHHHHHHhhhcCCCccCHHHHHHHHHHHHhccCHHHHHHHHHHHHHCCCCCCHHHHH
Q 004480 323 DMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWS 402 (750)
Q Consensus 323 ~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~g~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~ 402 (750)
.+.|+..+.+-|.-.++.++|...|+...++. +.....|+.|..-|....+...|.+-++..++-. +.|-..|-
T Consensus 329 R~ETCCiIaNYYSlr~eHEKAv~YFkRALkLN-----p~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~-p~DyRAWY 402 (559)
T KOG1155|consen 329 RPETCCIIANYYSLRSEHEKAVMYFKRALKLN-----PKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDIN-PRDYRAWY 402 (559)
T ss_pred CccceeeehhHHHHHHhHHHHHHHHHHHHhcC-----cchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcC-chhHHHHh
Confidence 56678788888888899999999999988731 2345678889999999999999999999998875 44888999
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCChHHHHHHHHHHhhc
Q 004480 403 SLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLS 462 (750)
Q Consensus 403 ~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~ 462 (750)
.|.++|.-.+...-|+-.|++..+.. +-|...|.+|.++|.+.++.++|.+.|......
T Consensus 403 GLGQaYeim~Mh~YaLyYfqkA~~~k-PnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~ 461 (559)
T KOG1155|consen 403 GLGQAYEIMKMHFYALYYFQKALELK-PNDSRLWVALGECYEKLNRLEEAIKCYKRAILL 461 (559)
T ss_pred hhhHHHHHhcchHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHhccHHHHHHHHHHHHhc
Confidence 99999999999999999999988753 448889999999999999999999999876543
No 48
>PF13041 PPR_2: PPR repeat family
Probab=99.36 E-value=1.9e-12 Score=89.38 Aligned_cols=49 Identities=37% Similarity=0.613 Sum_probs=30.3
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 004480 581 PDVVAYTTAIKVCVRSKRLKQAFSLFEEMKHYQIQPNLVTYITLLRARS 629 (750)
Q Consensus 581 p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~ 629 (750)
||..+||++|.+|++.|++++|.++|++|.+.|+.||..||+.+|++|+
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~ 49 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLC 49 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHc
Confidence 5566666666666666666666666666666666666666666666654
No 49
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.33 E-value=1.6e-08 Score=99.22 Aligned_cols=396 Identities=12% Similarity=0.037 Sum_probs=235.6
Q ss_pred hhhcCchhHHHHHHHHHHhcCCCccccccchhhhhhHHHHHHhhccCcHHHHHHHHHHHHhCCCCCcccccHHHHHHHHH
Q 004480 123 SIREGRIDCVVGVLKKLNELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCV 202 (750)
Q Consensus 123 ~~~~g~~~~A~~~l~~~~~~~~~p~~~~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 202 (750)
+.+.|.|++|+++|.++++ +.|+.. ..|+-.. +.|...|++++.++--.+.++.. |+-+-.+..-.+++.
T Consensus 125 ~f~~kkY~eAIkyY~~AI~--l~p~ep---iFYsNra---AcY~~lgd~~~Vied~TkALEl~--P~Y~KAl~RRA~A~E 194 (606)
T KOG0547|consen 125 FFRNKKYDEAIKYYTQAIE--LCPDEP---IFYSNRA---ACYESLGDWEKVIEDCTKALELN--PDYVKALLRRASAHE 194 (606)
T ss_pred hhhcccHHHHHHHHHHHHh--cCCCCc---hhhhhHH---HHHHHHhhHHHHHHHHHHHhhcC--cHHHHHHHHHHHHHH
Confidence 6699999999999999998 567632 2333222 23444799999999888888744 777666777777788
Q ss_pred cCCChHHHHHHhhhCCCCcchHHHHHHHHHhcCCHHHHHHHHH--------H-HHhCCC--CCCHHHHHHHHHHHHhc--
Q 004480 203 NKPDVNLAIRYACIVPRADILFCNFVREFGKKRDLVSALRAYD--------A-SKKHLS--SPNMYICRTIIDVCGIC-- 269 (750)
Q Consensus 203 ~~~~~~~A~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~--------~-~~~~~~--~~~~~~~~~li~~~~~~-- 269 (750)
..|++++|+-- .+..++...+....-.-.+.+++. + +.+.+. -|+....++....+...
T Consensus 195 ~lg~~~eal~D--------~tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~~ 266 (606)
T KOG0547|consen 195 QLGKFDEALFD--------VTVLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYFGSFHADPK 266 (606)
T ss_pred hhccHHHHHHh--------hhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHhhcccccc
Confidence 88888887542 122222222222222222222222 1 111221 14433333333332111
Q ss_pred ------C-----CHHHHHHHHHHHHhCCCCccHHHHHHHHHhhcCChHHHHHHHHHHHH---cCCCCC---------Hhh
Q 004480 270 ------G-----DYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKFTLEVYKNMQK---LGVMAD---------MAS 326 (750)
Q Consensus 270 ------g-----~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~a~~~~~~m~~---~g~~~~---------~~~ 326 (750)
+ ...++.+.+..-... .+..+...+.+-.. .....+ ..+
T Consensus 267 ~~~~~~~~ksDa~l~~~l~~l~~~~~e------------------~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~a 328 (606)
T KOG0547|consen 267 PLFDNKSDKSDAALAEALEALEKGLEE------------------GYLKAYDKATEECLGSESSLSVNEIDAELEYMAEA 328 (606)
T ss_pred ccccCCCccchhhHHHHHHHHHhhCch------------------hHHHHHHHHHHHhhhhhhhccccccchhHHHHHHH
Confidence 0 011111111111111 12222222211110 000111 112
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHhhhcCCCccCHHHHHHHHHHHHhccCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 004480 327 YNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLIN 406 (750)
Q Consensus 327 ~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~g~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~ 406 (750)
.......+.-.|+.-.|...|+....+. +.+...|--+...|....+-++..+.|++..+.+.. |..+|..-..
T Consensus 329 l~~~gtF~fL~g~~~~a~~d~~~~I~l~-----~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~-n~dvYyHRgQ 402 (606)
T KOG0547|consen 329 LLLRGTFHFLKGDSLGAQEDFDAAIKLD-----PAFNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPE-NPDVYYHRGQ 402 (606)
T ss_pred HHHhhhhhhhcCCchhhhhhHHHHHhcC-----cccchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCC-CCchhHhHHH
Confidence 2222233445688888999999888742 223333777777899999999999999998887643 6677777777
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCChHHHHHHHHHHhhcccccccCCCCCCchhhhhhhhhhh
Q 004480 407 ACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKD 486 (750)
Q Consensus 407 ~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 486 (750)
.+.-.+++++|..-|++..... +-+...|-.+--+..+.+++++++..|++...+
T Consensus 403 m~flL~q~e~A~aDF~Kai~L~-pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk------------------------ 457 (606)
T KOG0547|consen 403 MRFLLQQYEEAIADFQKAISLD-PENAYAYIQLCCALYRQHKIAESMKTFEEAKKK------------------------ 457 (606)
T ss_pred HHHHHHHHHHHHHHHHHHhhcC-hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh------------------------
Confidence 7777888999999999887653 235556666666777888999999999886643
Q ss_pred cccccCCCCccCCCccccccccCCCCccHHHHHHHHHHHHhcHHHHHHHHHHHHHcCCCCC---------HHHHHHHHHH
Q 004480 487 KQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTDYYRVKALMNEMRTVGLSPN---------HISWTILIDA 557 (750)
Q Consensus 487 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~a~~l~~~m~~~~~~p~---------~~~~~~li~~ 557 (750)
++-.|.+.+|-.-|-.=-++++.|.+.|+..++. .|+ +.+--.++..
T Consensus 458 ----------------------FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~L--E~~~~~~~v~~~plV~Ka~l~~ 513 (606)
T KOG0547|consen 458 ----------------------FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIEL--EPREHLIIVNAAPLVHKALLVL 513 (606)
T ss_pred ----------------------CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhh--ccccccccccchhhhhhhHhhh
Confidence 2335555555554444456788888888887763 232 1122222222
Q ss_pred HHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 004480 558 CGGSGNVEGALQILKIMREDGMSPDVVAYTTAIKVCVRSKRLKQAFSLFEEMKH 611 (750)
Q Consensus 558 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 611 (750)
-- .+++..|.+++++.++...+ ....|.+|...-.++|++++|+++|++-..
T Consensus 514 qw-k~d~~~a~~Ll~KA~e~Dpk-ce~A~~tlaq~~lQ~~~i~eAielFEksa~ 565 (606)
T KOG0547|consen 514 QW-KEDINQAENLLRKAIELDPK-CEQAYETLAQFELQRGKIDEAIELFEKSAQ 565 (606)
T ss_pred ch-hhhHHHHHHHHHHHHccCch-HHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 12 27888899988888874322 355788888888889999999999987653
No 50
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.33 E-value=5.2e-09 Score=97.35 Aligned_cols=223 Identities=12% Similarity=0.039 Sum_probs=130.9
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCccHHHHHHHHH-----hhcCChHHHH
Q 004480 235 RDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMN-----VNAHDLKFTL 309 (750)
Q Consensus 235 g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~-----~~~~~~~~a~ 309 (750)
.+.++|..+|-+|.+.. +.+..+.-+|.+.|.+.|..++|+++.+.+.++.-.+...-..++.. ..+|-++.|+
T Consensus 49 ~Q~dKAvdlF~e~l~~d-~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRAE 127 (389)
T COG2956 49 NQPDKAVDLFLEMLQED-PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRAE 127 (389)
T ss_pred cCcchHHHHHHHHHhcC-chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHHH
Confidence 45666666666666521 12334555666666666666666666666654311111111111111 0124455555
Q ss_pred HHHHHHHHcCCCCCHhhHHHHHHHHHHcCChHHHHHHHHHHHHhhhcCCCccC-HHHHHHHHHHHHhccCHHHHHHHHHH
Q 004480 310 EVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLD-VFTYSTIVKVFADAKWWQMALKVKED 388 (750)
Q Consensus 310 ~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~g~~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~ 388 (750)
.+|..+.+.+ ..-......|+..|....+|++|.++-+++.++.... .... ...|.-+...+....+.+.|..++.+
T Consensus 128 ~~f~~L~de~-efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~-~~~eIAqfyCELAq~~~~~~~~d~A~~~l~k 205 (389)
T COG2956 128 DIFNQLVDEG-EFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQT-YRVEIAQFYCELAQQALASSDVDRARELLKK 205 (389)
T ss_pred HHHHHHhcch-hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCcc-chhHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Confidence 5555555433 2334456677788888888888888877776632111 0001 12355555566666777888888887
Q ss_pred HHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCChHHHHHHHHHHhh
Q 004480 389 MLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTL 461 (750)
Q Consensus 389 m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~ 461 (750)
..+.+.+ .+..--.+.+.....|+++.|++.++.+.+.+..--..+...|..+|.+.|+.++....+..+.+
T Consensus 206 Alqa~~~-cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~ 277 (389)
T COG2956 206 ALQADKK-CVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAME 277 (389)
T ss_pred HHhhCcc-ceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 7766422 33444456667777888888888888887775444556677777788888888877777766554
No 51
>PF13041 PPR_2: PPR repeat family
Probab=99.32 E-value=3.8e-12 Score=87.86 Aligned_cols=50 Identities=28% Similarity=0.557 Sum_probs=47.8
Q ss_pred CCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q 004480 546 PNHISWTILIDACGGSGNVEGALQILKIMREDGMSPDVVAYTTAIKVCVR 595 (750)
Q Consensus 546 p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~ 595 (750)
||..+||++|++|++.|++++|.++|++|.+.|+.||..||+++|.+|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 89999999999999999999999999999999999999999999999975
No 52
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.31 E-value=1.5e-08 Score=106.33 Aligned_cols=530 Identities=12% Similarity=0.100 Sum_probs=272.7
Q ss_pred hccccCCcchhhhHHHHHHHHhhcCChHHHHHHHHHHHHhcCChhhHHhhhhHHHHHHHHHhhhhcCchhHHHHHHHHHH
Q 004480 61 STVRRDLSSRNDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLN 140 (750)
Q Consensus 61 ~~l~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~ 140 (750)
+.....|+- ..|.+++..|+..|+.+.|- +|.-|........ -++++.++......++.+.+.
T Consensus 17 e~~gi~PnR--vtyqsLiarYc~~gdieaat-if~fm~~ksLpv~-------e~vf~~lv~sh~~And~Enpk------- 79 (1088)
T KOG4318|consen 17 EISGILPNR--VTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVR-------EGVFRGLVASHKEANDAENPK------- 79 (1088)
T ss_pred HHhcCCCch--hhHHHHHHHHcccCCCcccc-chhhhhccccccc-------chhHHHHHhcccccccccCCC-------
Confidence 334444544 88999999999999999998 7776654432111 222233333344444444333
Q ss_pred hcCCCccccccchhhhhhHHHHHHhhccCcHHHHHHHHHH----HH----hC-------------CCCCcccccHHHHHH
Q 004480 141 ELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEV----LE----EF-------------RLPVKELDEEFRIVQ 199 (750)
Q Consensus 141 ~~~~~p~~~~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~----~~----~~-------------~~~~~~~~~~~~l~~ 199 (750)
.| ...++..+..++ ...|+..- ++..++ +. .. ...|........++.
T Consensus 80 ----ep----~aDtyt~Ll~ay---r~hGDli~-fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~il 147 (1088)
T KOG4318|consen 80 ----EP----LADTYTNLLKAY---RIHGDLIL-FEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAIL 147 (1088)
T ss_pred ----CC----chhHHHHHHHHH---HhccchHH-HHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHH
Confidence 11 112333333322 22444332 111111 11 01 111222222334455
Q ss_pred HHHcCCChHHHHHHhhhCCCCcchHHH--HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 004480 200 LCVNKPDVNLAIRYACIVPRADILFCN--FVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRA 277 (750)
Q Consensus 200 ~~~~~~~~~~A~~~~~~~~~~~~~~~~--l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 277 (750)
.....|-.+.+++.....|.....-.. +++-+.. .+....++.+......-.|+..+|.+++..-...|+.+.|..
T Consensus 148 llv~eglwaqllkll~~~Pvsa~~~p~~vfLrqnv~--~ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ 225 (1088)
T KOG4318|consen 148 LLVLEGLWAQLLKLLAKVPVSAWNAPFQVFLRQNVV--DNTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKN 225 (1088)
T ss_pred HHHHHHHHHHHHHHHhhCCcccccchHHHHHHHhcc--CCchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHH
Confidence 555666777777777776654321111 2222222 222333444333322124899999999999999999999999
Q ss_pred HHHHHHhCCCCccHHHHHHHHHhhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHHcCChHHHHHHHHHHHHhhhcC
Q 004480 278 IYEDLRSQNVTLNIYVFNSLMNVNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKG 357 (750)
Q Consensus 278 ~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~g 357 (750)
++.+|++.|++.+.+-|..++-+ .++...+..+++-|.+.|+.|+..|+...+-.+.+.|....+....+.-
T Consensus 226 ll~emke~gfpir~HyFwpLl~g-~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~t~~~~e~sq~~------- 297 (1088)
T KOG4318|consen 226 LLYEMKEKGFPIRAHYFWPLLLG-INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQTKYGEEGSQLA------- 297 (1088)
T ss_pred HHHHHHHcCCCcccccchhhhhc-CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchhhhhcccccchh-------
Confidence 99999999999999988888877 7788889999999999999999999999888888866533322211110
Q ss_pred CCccCHHHHHHHHHHHHhccCHH-----HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CC
Q 004480 358 VLKLDVFTYSTIVKVFADAKWWQ-----MALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAG--CE 430 (750)
Q Consensus 358 ~~~~~~~~~~~li~~~~~~g~~~-----~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~--~~ 430 (750)
.-.....+..+.++.....+.+ -....+.+..-.|+......|...+. ...+|.-++..++...|..-- ..
T Consensus 298 -hg~tAavrsaa~rg~~a~k~l~~nl~~~v~~s~k~~fLlg~d~~~aiws~c~~-l~hQgk~e~veqlvg~l~npt~r~s 375 (1088)
T KOG4318|consen 298 -HGFTAAVRSAACRGLLANKRLRQNLRKSVIGSTKKLFLLGTDILEAIWSMCEK-LRHQGKGEEVEQLVGQLLNPTLRDS 375 (1088)
T ss_pred -hhhhHHHHHHHhcccHhHHHHHHHHHHHHHHHhhHHHHhccccchHHHHHHHH-HHHcCCCchHHHHHhhhcCCccccC
Confidence 0012233444444322222222 22223333333344433344443333 233677677777766664321 12
Q ss_pred C-CHHHHHHHHHHHHHhCChHHHHHHHHHHhhcccccccCCCCCCchhh-hhhhhh-hhcccccC-CCCccCCCcccccc
Q 004480 431 P-NSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDR-ISNMEH-KDKQSITN-TPNFVPNSHYSSFD 506 (750)
Q Consensus 431 p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~ 506 (750)
+ ++..|..++.-|.+.-+..-...++. ...++....+......... +..... ........ +.+.+...+...
T Consensus 376 ~~~V~a~~~~lrqyFrr~e~~~~~~i~~--~~qgls~~l~se~tp~vsell~~lrkns~lr~lv~Lss~Eler~he~~-- 451 (1088)
T KOG4318|consen 376 GQNVDAFGALLRQYFRRIERHICSRIYY--AGQGLSLNLNSEDTPRVSELLENLRKNSFLRQLVGLSSTELERSHEPW-- 451 (1088)
T ss_pred cchHHHHHHHHHHHHHHHHhhHHHHHHH--HHHHHHhhhchhhhHHHHHHHHHhCcchHHHHHhhhhHHHHhcccccc--
Confidence 2 33445555554443322111111111 0000000000000000000 000000 00000000 000000000000
Q ss_pred ccCCCCccHHHHHHHHHHHHh--cHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHC--CCCCC
Q 004480 507 KRFSFKPTTTTYNILMKACCT--DYYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQILKIMRED--GMSPD 582 (750)
Q Consensus 507 ~~~~~~p~~~~~~~li~~~~~--~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--g~~p~ 582 (750)
. ....+-...-+.++..|++ +..+++..-+.....-+ | ..|..||+-++...+.+.|..+.++.... .+..|
T Consensus 452 ~-~~~h~irdi~~ql~l~l~se~n~lK~l~~~ekye~~lf-~--g~ya~Li~l~~~hdkle~Al~~~~e~d~~d~s~~Ld 527 (1088)
T KOG4318|consen 452 P-LIAHLIRDIANQLHLTLNSEYNKLKILCDEEKYEDLLF-A--GLYALLIKLMDLHDKLEYALSFVDEIDTRDESIHLD 527 (1088)
T ss_pred h-hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-h--hHHHHHhhhHHHHHHHHHHHhchhhhcccchhhhcc
Confidence 0 0001112233455555654 23344433332222111 1 56888888888888889998888888643 34456
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC-CCCC-HHHHHHHHHHHHhcCCHHHHHH
Q 004480 583 VVAYTTAIKVCVRSKRLKQAFSLFEEMKHYQ-IQPN-LVTYITLLRARSRYGSLHEVQQ 639 (750)
Q Consensus 583 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~-~~t~~~li~~~~~~g~~~~~~~ 639 (750)
..-+..+.+.+.+.+....+..++++|.+.- ..|+ ..++--++......|+.+..++
T Consensus 528 ~~~m~~l~dLL~r~~~l~dl~tiL~e~ks~a~n~~~~a~~~f~~lns~a~agqqe~Lkk 586 (1088)
T KOG4318|consen 528 LPLMTSLQDLLQRLAILYDLSTILYEDKSSAENEPLVAIILFPLLNSGAPAGQQEKLKK 586 (1088)
T ss_pred cHhHHHHHHHHHHhHHHHHHHHHHhhhhHHhhCCchHHHHHHHHHhhhhhccCHHHHHH
Confidence 6778888888888888889999988887532 2232 4555666666677777766554
No 53
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.31 E-value=6.2e-09 Score=100.04 Aligned_cols=197 Identities=13% Similarity=0.077 Sum_probs=93.8
Q ss_pred CCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcc
Q 004480 218 PRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPN-------MYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLN 290 (750)
Q Consensus 218 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~ 290 (750)
|.+..+.......|.+.|++.....++..+.+.|.-.+ ..+|+.+++-....+..+.-...+++.... .+-+
T Consensus 184 pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~~pr~-lr~~ 262 (400)
T COG3071 184 PRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKNQPRK-LRND 262 (400)
T ss_pred cCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhccHH-hhcC
Confidence 33344445555555555555555555555555553322 234555554444444444433344443321 1111
Q ss_pred HHHHHHHHH--hhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHHcCChHHHHHHHHHHHHhhhcCCCccCHHHHHH
Q 004480 291 IYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYST 368 (750)
Q Consensus 291 ~~~~~~ll~--~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~g~~~~~~~~~~~ 368 (750)
...-.+++. ..+|+.++|.++..+..+.+..|+.. .+-.+.+-++.+.-++..+.-.+. .+-+...+.+
T Consensus 263 p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L~----~~~~~l~~~d~~~l~k~~e~~l~~-----h~~~p~L~~t 333 (400)
T COG3071 263 PELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRLC----RLIPRLRPGDPEPLIKAAEKWLKQ-----HPEDPLLLST 333 (400)
T ss_pred hhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhHH----HHHhhcCCCCchHHHHHHHHHHHh-----CCCChhHHHH
Confidence 111122221 23355555555555555554444311 111233344444444444433321 2233455556
Q ss_pred HHHHHHhccCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004480 369 IVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQ 426 (750)
Q Consensus 369 li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 426 (750)
|...|.+.+.|.+|...|+..++. .|+..+|+.+.++|.+.|+..+|.+..++..-
T Consensus 334 LG~L~~k~~~w~kA~~~leaAl~~--~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~ 389 (400)
T COG3071 334 LGRLALKNKLWGKASEALEAALKL--RPSASDYAELADALDQLGEPEEAEQVRREALL 389 (400)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHhc--CCChhhHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 666666666666666666655543 45666666666666666666666666665543
No 54
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.29 E-value=1.4e-08 Score=94.46 Aligned_cols=151 Identities=12% Similarity=0.059 Sum_probs=95.8
Q ss_pred ChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHHcCChHHHHHHHHHHHHhhhcCCCccC--HHHHHHHHHHHHhccCHHH
Q 004480 304 DLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLD--VFTYSTIVKVFADAKWWQM 381 (750)
Q Consensus 304 ~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~g~~~~~--~~~~~~li~~~~~~g~~~~ 381 (750)
+.+.|..++....+.+ +..+..--.+.+.....|+++.|.+.++.+.+. .|+ ..+...|..+|...|+.++
T Consensus 195 ~~d~A~~~l~kAlqa~-~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQ------n~~yl~evl~~L~~~Y~~lg~~~~ 267 (389)
T COG2956 195 DVDRARELLKKALQAD-KKCVRASIILGRVELAKGDYQKAVEALERVLEQ------NPEYLSEVLEMLYECYAQLGKPAE 267 (389)
T ss_pred hHHHHHHHHHHHHhhC-ccceehhhhhhHHHHhccchHHHHHHHHHHHHh------ChHHHHHHHHHHHHHHHHhCCHHH
Confidence 4444555555444432 122333334667778888888888888888762 233 3456778888888888888
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH---hCChHHHHHHHHH
Q 004480 382 ALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVE---ACQFDRAFRLFRS 458 (750)
Q Consensus 382 a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~---~g~~~~A~~~~~~ 458 (750)
....+..+.+.... ...-..+-.......-.+.|..++.+-..+ +|+...+..+|+.-.. -|...+.+.+++.
T Consensus 268 ~~~fL~~~~~~~~g--~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r--~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~ 343 (389)
T COG2956 268 GLNFLRRAMETNTG--ADAELMLADLIELQEGIDAAQAYLTRQLRR--KPTMRGFHRLMDYHLADAEEGRAKESLDLLRD 343 (389)
T ss_pred HHHHHHHHHHccCC--ccHHHHHHHHHHHhhChHHHHHHHHHHHhh--CCcHHHHHHHHHhhhccccccchhhhHHHHHH
Confidence 88888888775333 333333433334444466666666665554 7888888888886543 3456667777888
Q ss_pred Hhhcccc
Q 004480 459 WTLSKTQ 465 (750)
Q Consensus 459 ~~~~~~~ 465 (750)
|....+.
T Consensus 344 mvge~l~ 350 (389)
T COG2956 344 MVGEQLR 350 (389)
T ss_pred HHHHHHh
Confidence 8766543
No 55
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.29 E-value=2.2e-10 Score=119.78 Aligned_cols=86 Identities=16% Similarity=0.204 Sum_probs=75.8
Q ss_pred CCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 004480 545 SPNHISWTILIDACGGSGNVEGALQILKIMREDGMSPDVVAYTTAIKVCVRSKRLKQAFSLFEEMKHYQIQPNLVTYITL 624 (750)
Q Consensus 545 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l 624 (750)
.|+..+|.++++.-...|+++.|..++.+|.+.|+..+..-|..|+-+ .++..-+..+++-|.+.|+.|+..|+...
T Consensus 201 ~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~ady 277 (1088)
T KOG4318|consen 201 APTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADY 277 (1088)
T ss_pred CCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHH
Confidence 589999999999999999999999999999999999998888888877 78888888999999999999999999888
Q ss_pred HHHHHhcCC
Q 004480 625 LRARSRYGS 633 (750)
Q Consensus 625 i~~~~~~g~ 633 (750)
+-.+...|.
T Consensus 278 vip~l~N~~ 286 (1088)
T KOG4318|consen 278 VIPQLSNGQ 286 (1088)
T ss_pred HHhhhcchh
Confidence 888777544
No 56
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.24 E-value=3.4e-06 Score=82.95 Aligned_cols=472 Identities=10% Similarity=0.107 Sum_probs=320.0
Q ss_pred hhcCchhHHHHHHHHHHhcCCCccccccchhhhhhHHHHHHhhccCcHHHHHHHHHHHHhCCCCCcccccHHHHHHHHHc
Q 004480 124 IREGRIDCVVGVLKKLNELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVN 203 (750)
Q Consensus 124 ~~~g~~~~A~~~l~~~~~~~~~p~~~~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 203 (750)
..++++..|..+|++++...- ....+.++=+..-.++..+..|..++++.+. .-|.....|..-+..-..
T Consensus 84 esq~e~~RARSv~ERALdvd~--------r~itLWlkYae~Emknk~vNhARNv~dRAvt--~lPRVdqlWyKY~ymEE~ 153 (677)
T KOG1915|consen 84 ESQKEIQRARSVFERALDVDY--------RNITLWLKYAEFEMKNKQVNHARNVWDRAVT--ILPRVDQLWYKYIYMEEM 153 (677)
T ss_pred HhHHHHHHHHHHHHHHHhccc--------ccchHHHHHHHHHHhhhhHhHHHHHHHHHHH--hcchHHHHHHHHHHHHHH
Confidence 367888899999999997431 1222223222222336788899999999887 346666667777777778
Q ss_pred CCChHHHHHHhhhC---CCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 004480 204 KPDVNLAIRYACIV---PRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYE 280 (750)
Q Consensus 204 ~~~~~~A~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 280 (750)
.|++..|.++|+.- .++..+|.+.|+.=.+-+.++.|..+|++..- +.|++.+|-.....=.++|....|..+|.
T Consensus 154 LgNi~gaRqiferW~~w~P~eqaW~sfI~fElRykeieraR~IYerfV~--~HP~v~~wikyarFE~k~g~~~~aR~Vye 231 (677)
T KOG1915|consen 154 LGNIAGARQIFERWMEWEPDEQAWLSFIKFELRYKEIERARSIYERFVL--VHPKVSNWIKYARFEEKHGNVALARSVYE 231 (677)
T ss_pred hcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhe--ecccHHHHHHHHHHHHhcCcHHHHHHHHH
Confidence 89999999999873 66779999999999999999999999999886 56999999988888889999999999999
Q ss_pred HHHhC-CC-CccHHHHHHHHHh--hcCChHHHHHHHHHHHHcCCCCC--HhhHHHHHHHHHHcCChHHHHHH--------
Q 004480 281 DLRSQ-NV-TLNIYVFNSLMNV--NAHDLKFTLEVYKNMQKLGVMAD--MASYNILLKACCLAGNTVLAQEI-------- 346 (750)
Q Consensus 281 ~m~~~-g~-~~~~~~~~~ll~~--~~~~~~~a~~~~~~m~~~g~~~~--~~~~~~ll~~~~~~g~~~~A~~~-------- 346 (750)
...+. |- ..+...|+++-.. .++.++.|.-+|+-.... ++.+ ...|..+...=-+-|+.......
T Consensus 232 rAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~-~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~q 310 (677)
T KOG1915|consen 232 RAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDH-IPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQ 310 (677)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhH
Confidence 88754 21 1122333333332 235788888888887765 2223 34455555444455654433332
Q ss_pred HHHHHHhhhcCCCccCHHHHHHHHHHHHhccCHHHHHHHHHHHHHCCCCCCHH--HHHHHH-----HHH---HhcCCHHH
Q 004480 347 YGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTI--TWSSLI-----NAC---ANAGLVEQ 416 (750)
Q Consensus 347 ~~~~~~~~~~g~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~--~~~~li-----~~~---~~~g~~~~ 416 (750)
++.+.+ + -+.|-.+|--.++.-...|+.+...++|+..+.. ++|-.. .|.-.| -+| ....+++.
T Consensus 311 YE~~v~---~--np~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~er 384 (677)
T KOG1915|consen 311 YEKEVS---K--NPYNYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVER 384 (677)
T ss_pred HHHHHH---h--CCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Confidence 222222 2 2457778888888888889999999999999875 444221 122111 121 24678999
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHH----HhCChHHHHHHHHHHhhcccccccCCCCCCchhhhhhhhhhhcccccC
Q 004480 417 AMHLFEEMLQAGCEPNSQCCNILLQACV----EACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITN 492 (750)
Q Consensus 417 a~~~~~~m~~~~~~p~~~~~~~ll~~~~----~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 492 (750)
+.++++..++. ++....||.-+--.|+ +..++..|.+++....
T Consensus 385 tr~vyq~~l~l-IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AI-------------------------------- 431 (677)
T KOG1915|consen 385 TRQVYQACLDL-IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAI-------------------------------- 431 (677)
T ss_pred HHHHHHHHHhh-cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHh--------------------------------
Confidence 99999999883 4556667766655554 5678888888887644
Q ss_pred CCCccCCCccccccccCCCCccHHHHHHHHHHH--HhcHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHH
Q 004480 493 TPNFVPNSHYSSFDKRFSFKPTTTTYNILMKAC--CTDYYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQI 570 (750)
Q Consensus 493 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~--~~~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~ 570 (750)
|..|-.-++-..|..= .++++++..+++...+.+. -+..+|.-....=...|+.+.|..+
T Consensus 432 -----------------G~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~P-e~c~~W~kyaElE~~LgdtdRaRai 493 (677)
T KOG1915|consen 432 -----------------GKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFSP-ENCYAWSKYAELETSLGDTDRARAI 493 (677)
T ss_pred -----------------ccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcCh-HhhHHHHHHHHHHHHhhhHHHHHHH
Confidence 3467777776665543 3589999999999999642 2667888877777889999999999
Q ss_pred HHHHHHCC-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH--hcCCHH-----------H
Q 004480 571 LKIMREDG-MSPDVVAYTTAIKVCVRSKRLKQAFSLFEEMKHYQIQPNLVTYITLLRARS--RYGSLH-----------E 636 (750)
Q Consensus 571 ~~~m~~~g-~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~--~~g~~~-----------~ 636 (750)
|+-.++.. +.--...|-+.|+-=...|.+++|..+|+++.+. .+-..+|-++..-=. ..|+-+ .
T Consensus 494 felAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~r--t~h~kvWisFA~fe~s~~~~~~~~~~~~~e~~~~~ 571 (677)
T KOG1915|consen 494 FELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDR--TQHVKVWISFAKFEASASEGQEDEDLAELEITDEN 571 (677)
T ss_pred HHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHh--cccchHHHhHHHHhccccccccccchhhhhcchhH
Confidence 99998742 1112456777777777899999999999999874 333345544443322 223222 3
Q ss_pred HHHHHHHHHHHHH--cCCCCCHHHHHHHHHHHHh
Q 004480 637 VQQCLAVYQDMWK--AGYKANDTYLKELIEEWCE 668 (750)
Q Consensus 637 ~~~a~~~~~~m~~--~g~~p~~~~~~~li~~~~~ 668 (750)
...|..+|++... +...| ..---.|+.+|-.
T Consensus 572 ~~~AR~iferAn~~~k~~~~-KeeR~~LLEaw~~ 604 (677)
T KOG1915|consen 572 IKRARKIFERANTYLKESTP-KEERLMLLEAWKN 604 (677)
T ss_pred HHHHHHHHHHHHHHHHhcCc-HHHHHHHHHHHHH
Confidence 4556667776543 12222 3334456666643
No 57
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.22 E-value=8.4e-07 Score=85.68 Aligned_cols=288 Identities=13% Similarity=0.136 Sum_probs=208.0
Q ss_pred HHHHHHHHhhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHHcCChHHHHHHHHHHHHhhhcCCCccCHHHHHHHHH
Q 004480 292 YVFNSLMNVNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVK 371 (750)
Q Consensus 292 ~~~~~ll~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~g~~~~~~~~~~~li~ 371 (750)
.+-..+++...|++..|+++..+-.+.+-. ....|..-..+-...|+.+.+-+++.++.+. .| .++...+.+...
T Consensus 87 ~~~egl~~l~eG~~~qAEkl~~rnae~~e~-p~l~~l~aA~AA~qrgd~~~an~yL~eaae~--~~--~~~l~v~ltrar 161 (400)
T COG3071 87 ALNEGLLKLFEGDFQQAEKLLRRNAEHGEQ-PVLAYLLAAEAAQQRGDEDRANRYLAEAAEL--AG--DDTLAVELTRAR 161 (400)
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHhhhcCcc-hHHHHHHHHHHHHhcccHHHHHHHHHHHhcc--CC--CchHHHHHHHHH
Confidence 344556667778899999888887776532 2344555566777889999999999998872 11 345566778888
Q ss_pred HHHhccCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH-------HHHHHHHHHHH
Q 004480 372 VFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNS-------QCCNILLQACV 444 (750)
Q Consensus 372 ~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~-------~~~~~ll~~~~ 444 (750)
.....|+++.|..-++++.+.+.. +.........+|.+.|++.....++..|.+.|.--|. .+|+.+++-..
T Consensus 162 lll~~~d~~aA~~~v~~ll~~~pr-~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~ 240 (400)
T COG3071 162 LLLNRRDYPAARENVDQLLEMTPR-HPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQAR 240 (400)
T ss_pred HHHhCCCchhHHHHHHHHHHhCcC-ChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHh
Confidence 899999999999999999988644 6778889999999999999999999999999865444 34555555444
Q ss_pred HhCChHHHHHHHHHHhhcccccccCCCCCCchhhhhhhhhhhcccccCCCCccCCCccccccccCCCCccHHHHHHHHHH
Q 004480 445 EACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKA 524 (750)
Q Consensus 445 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~ 524 (750)
..+..+.-...++....+ .+-+...-.+++.-
T Consensus 241 ~~~~~~gL~~~W~~~pr~------------------------------------------------lr~~p~l~~~~a~~ 272 (400)
T COG3071 241 DDNGSEGLKTWWKNQPRK------------------------------------------------LRNDPELVVAYAER 272 (400)
T ss_pred ccccchHHHHHHHhccHH------------------------------------------------hhcChhHHHHHHHH
Confidence 433333333333332211 11222222233333
Q ss_pred H--HhcHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHH
Q 004480 525 C--CTDYYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQILKIMREDGMSPDVVAYTTAIKVCVRSKRLKQA 602 (750)
Q Consensus 525 ~--~~~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A 602 (750)
+ |++.++|.++..+..+.+..|+... .-.+.+-++...-++..++-.+. ..-++-.+.+|...|.+.+.+.+|
T Consensus 273 li~l~~~~~A~~~i~~~Lk~~~D~~L~~----~~~~l~~~d~~~l~k~~e~~l~~-h~~~p~L~~tLG~L~~k~~~w~kA 347 (400)
T COG3071 273 LIRLGDHDEAQEIIEDALKRQWDPRLCR----LIPRLRPGDPEPLIKAAEKWLKQ-HPEDPLLLSTLGRLALKNKLWGKA 347 (400)
T ss_pred HHHcCChHHHHHHHHHHHHhccChhHHH----HHhhcCCCCchHHHHHHHHHHHh-CCCChhHHHHHHHHHHHhhHHHHH
Confidence 3 4678999999999999887777222 23456777877777777776554 122457888999999999999999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 004480 603 FSLFEEMKHYQIQPNLVTYITLLRARSRYGSLHEVQQC 640 (750)
Q Consensus 603 ~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~~~~a 640 (750)
.+.|+...+ ..|+..+|+.+-+++.+.|+..++++.
T Consensus 348 ~~~leaAl~--~~~s~~~~~~la~~~~~~g~~~~A~~~ 383 (400)
T COG3071 348 SEALEAALK--LRPSASDYAELADALDQLGEPEEAEQV 383 (400)
T ss_pred HHHHHHHHh--cCCChhhHHHHHHHHHHcCChHHHHHH
Confidence 999997776 689999999999999999998886653
No 58
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.21 E-value=2.4e-09 Score=110.66 Aligned_cols=252 Identities=13% Similarity=0.080 Sum_probs=150.7
Q ss_pred hhhHHHHHHHHhhcCChHHHHHHHHHHHHhcCChhhHHhhhhHHHHHHHHHhhhhcCchhHHHHHHHHHHhc---CCCcc
Q 004480 71 NDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNEL---GVAPL 147 (750)
Q Consensus 71 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~---~~~p~ 147 (750)
......+...|...|+++.|+.+++.+++.=.+.....++.....+..+...|...+++++|+.+|++++.. ...++
T Consensus 199 ~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~ 278 (508)
T KOG1840|consen 199 LRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGED 278 (508)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCC
Confidence 667777999999999999999999999876111111223334455556777899999999999999999875 22233
Q ss_pred ccccchhhhhhHHHHHHhhccCcHHHHHHHHHHHHhCC------CCCcccccHHHHHHHHHcCCChHHHHHHhhhC----
Q 004480 148 ELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFR------LPVKELDEEFRIVQLCVNKPDVNLAIRYACIV---- 217 (750)
Q Consensus 148 ~~~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~------~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~---- 217 (750)
.. ....++.+....|...|++++|...+++....- ..+.-...+..++..+...+++++|..++...
T Consensus 279 h~---~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~ 355 (508)
T KOG1840|consen 279 HP---AVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIY 355 (508)
T ss_pred CH---HHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHH
Confidence 33 344555665666777999999998888765421 11222233444455555555555555544331
Q ss_pred ---C-C-C---cchHHHHHHHHHhcCCHHHHHHHHHHHHhCC----C--CCC-HHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 004480 218 ---P-R-A---DILFCNFVREFGKKRDLVSALRAYDASKKHL----S--SPN-MYICRTIIDVCGICGDYMKSRAIYEDL 282 (750)
Q Consensus 218 ---~-~-~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~----~--~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m 282 (750)
+ . + ..+++.|...|...|++++|+++|.+++... . .+. ...++.+...|.+.+++.+|.++|.+.
T Consensus 356 ~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~ 435 (508)
T KOG1840|consen 356 LDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEA 435 (508)
T ss_pred HhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHH
Confidence 1 1 1 1344555555555555555555555443211 0 111 223444444445555555555554433
Q ss_pred HhCCCCccHHHHHHHHHhhcCChHHHHHHHHHHHHcC--CCCCHhhHHHHHHHHHHcCChHHHHHHHHHHHHhh
Q 004480 283 RSQNVTLNIYVFNSLMNVNAHDLKFTLEVYKNMQKLG--VMADMASYNILLKACCLAGNTVLAQEIYGEVKHLE 354 (750)
Q Consensus 283 ~~~g~~~~~~~~~~ll~~~~~~~~~a~~~~~~m~~~g--~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~ 354 (750)
. . .|+..| .+-...+|..|...|...|+++.|.++.+.+....
T Consensus 436 ~--------------------------~---i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~~~ 480 (508)
T KOG1840|consen 436 K--------------------------D---IMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLNAR 480 (508)
T ss_pred H--------------------------H---HHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHHHH
Confidence 2 1 122222 22335678899999999999999999988887544
No 59
>PRK12370 invasion protein regulator; Provisional
Probab=99.18 E-value=1.4e-08 Score=110.57 Aligned_cols=186 Identities=10% Similarity=-0.044 Sum_probs=93.5
Q ss_pred CChHHHHHHHHHHHHhcCChhhHHhhhhHHHHHHHHH---hhhhcCchhHHHHHHHHHHhcCCCccccccchhhhhhHHH
Q 004480 85 GRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIV---KSIREGRIDCVVGVLKKLNELGVAPLELFDGSGFKLLKNE 161 (750)
Q Consensus 85 g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~---~~~~~g~~~~A~~~l~~~~~~~~~p~~~~~~~~~~~l~~~ 161 (750)
+.+++|+.+|+++++. +|+..........+..... .+...+++++|...++++++ +.|+.. ..+..+..
T Consensus 275 ~~~~~A~~~~~~Al~l--dP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~--ldP~~~---~a~~~lg~- 346 (553)
T PRK12370 275 YSLQQALKLLTQCVNM--SPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATE--LDHNNP---QALGLLGL- 346 (553)
T ss_pred HHHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHh--cCCCCH---HHHHHHHH-
Confidence 4567999999999988 6654433222211100000 01234557788888888876 455443 12222222
Q ss_pred HHHhhccCcHHHHHHHHHHHHhCCCCCcccccHHHHHHHHHcCCChHHHHHHhhhC----CCCcchHHHHHHHHHhcCCH
Q 004480 162 CQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIV----PRADILFCNFVREFGKKRDL 237 (750)
Q Consensus 162 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~----~~~~~~~~~l~~~~~~~g~~ 237 (750)
.+...|++++|...|+++++.. |++...+..++..+...|++++|+..++.. |.+...+..++..+...|++
T Consensus 347 --~~~~~g~~~~A~~~~~~Al~l~--P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~~~~~~~~~~~~~~~g~~ 422 (553)
T PRK12370 347 --INTIHSEYIVGSLLFKQANLLS--PISADIKYYYGWNLFMAGQLEEALQTINECLKLDPTRAAAGITKLWITYYHTGI 422 (553)
T ss_pred --HHHHccCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHhccCH
Confidence 2233678888888888877754 666555555555555555555555554442 22222222223333344455
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 004480 238 VSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDL 282 (750)
Q Consensus 238 ~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 282 (750)
++|+..+++..+...+-+...+..+..++...|++++|...+.++
T Consensus 423 eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~ 467 (553)
T PRK12370 423 DDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEI 467 (553)
T ss_pred HHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHh
Confidence 555555554443221112333444444444555555555555443
No 60
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.16 E-value=1.2e-06 Score=89.62 Aligned_cols=455 Identities=12% Similarity=0.081 Sum_probs=282.9
Q ss_pred hhHHHHHHHHhhcCChHHHHHHHHHHHHhcCChhhHHhhhhHHHHHHHHHhhhhcCchhHHHHHHHHHHhcCCCcccccc
Q 004480 72 DYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLELFD 151 (750)
Q Consensus 72 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~p~~~~~ 151 (750)
..+..++..| ..+++...+...+.++.. .|++-..+-.-+.. +...|+-++|.+..+..++..+. ...-
T Consensus 9 ~lF~~~lk~y-E~kQYkkgLK~~~~iL~k--~~eHgeslAmkGL~------L~~lg~~~ea~~~vr~glr~d~~--S~vC 77 (700)
T KOG1156|consen 9 ALFRRALKCY-ETKQYKKGLKLIKQILKK--FPEHGESLAMKGLT------LNCLGKKEEAYELVRLGLRNDLK--SHVC 77 (700)
T ss_pred HHHHHHHHHH-HHHHHHhHHHHHHHHHHh--CCccchhHHhccch------hhcccchHHHHHHHHHHhccCcc--cchh
Confidence 3444444444 458999999999999886 55544333333333 67899999999999988874332 2222
Q ss_pred chhhhhhHHHHHHhhccCcHHHHHHHHHHHHhCCCCCcccccHHHHHHHHHcCCChHHHHH----HhhhCCCCcchHHHH
Q 004480 152 GSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIR----YACIVPRADILFCNF 227 (750)
Q Consensus 152 ~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~----~~~~~~~~~~~~~~l 227 (750)
...++.+-+ ...++++|++.|..++..+ +++...+..+.-.-.+.|+++.... +++..|.....|..+
T Consensus 78 wHv~gl~~R------~dK~Y~eaiKcy~nAl~~~--~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~~ra~w~~~ 149 (700)
T KOG1156|consen 78 WHVLGLLQR------SDKKYDEAIKCYRNALKIE--KDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRPSQRASWIGF 149 (700)
T ss_pred HHHHHHHHh------hhhhHHHHHHHHHHHHhcC--CCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHHHHHHH
Confidence 223333322 2688999999999999855 9998888888777777777775544 455567777889999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCC-CCCHHHHHHHH------HHHHhcCCHHHHHHHHHHHHhCCCCccHHHHH---HH
Q 004480 228 VREFGKKRDLVSALRAYDASKKHLS-SPNMYICRTII------DVCGICGDYMKSRAIYEDLRSQNVTLNIYVFN---SL 297 (750)
Q Consensus 228 ~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~li------~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~---~l 297 (750)
+.++.-.|++..|..+.++..+... .|+...+.-.. ....+.|.+++|++.+..-... ..|-..+. .-
T Consensus 150 Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~--i~Dkla~~e~ka~ 227 (700)
T KOG1156|consen 150 AVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQ--IVDKLAFEETKAD 227 (700)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhH--HHHHHHHhhhHHH
Confidence 9999999999999999998887542 35554444322 2345668888888777654322 12222221 12
Q ss_pred HHhhcCChHHHHHHHHHHHHcCCCCCHhhHHHH-HHHHHHcCChHHHH-HHHHHHHHhhhcCCCccCHHHHHHH-HHHHH
Q 004480 298 MNVNAHDLKFTLEVYKNMQKLGVMADMASYNIL-LKACCLAGNTVLAQ-EIYGEVKHLEAKGVLKLDVFTYSTI-VKVFA 374 (750)
Q Consensus 298 l~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l-l~~~~~~g~~~~A~-~~~~~~~~~~~~g~~~~~~~~~~~l-i~~~~ 374 (750)
+....+++++|..+|..+...+ ||..-|... ..++.+-.+.-++. .+|....+. .|-...-..+ ++.+.
T Consensus 228 l~~kl~~lEeA~~~y~~Ll~rn--Pdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~------y~r~e~p~Rlplsvl~ 299 (700)
T KOG1156|consen 228 LLMKLGQLEEAVKVYRRLLERN--PDNLDYYEGLEKALGKIKDMLEALKALYAILSEK------YPRHECPRRLPLSVLN 299 (700)
T ss_pred HHHHHhhHHhHHHHHHHHHhhC--chhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhc------CcccccchhccHHHhC
Confidence 2234578999999999999874 666555544 44444344444444 666665541 1211111111 11111
Q ss_pred hccCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH----cC----------CCCCHHHH--HH
Q 004480 375 DAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQ----AG----------CEPNSQCC--NI 438 (750)
Q Consensus 375 ~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~----~~----------~~p~~~~~--~~ 438 (750)
...-.+..-.++..+.+.|+++ +|..+...|-.....+-..++.-.+.. .| -+|+...| -.
T Consensus 300 ~eel~~~vdkyL~~~l~Kg~p~---vf~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~ 376 (700)
T KOG1156|consen 300 GEELKEIVDKYLRPLLSKGVPS---VFKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYF 376 (700)
T ss_pred cchhHHHHHHHHHHHhhcCCCc---hhhhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHH
Confidence 2223344556777778888764 445555544443333322222222221 11 14555544 45
Q ss_pred HHHHHHHhCChHHHHHHHHHHhhcccccccCCCCCCchhhhhhhhhhhcccccCCCCccCCCccccccccCCCCccHHHH
Q 004480 439 LLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTY 518 (750)
Q Consensus 439 ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ 518 (750)
+...+-+.|+++.|...++..... .|+.+-.
T Consensus 377 laqh~D~~g~~~~A~~yId~AIdH-------------------------------------------------TPTliEl 407 (700)
T KOG1156|consen 377 LAQHYDKLGDYEVALEYIDLAIDH-------------------------------------------------TPTLIEL 407 (700)
T ss_pred HHHHHHHcccHHHHHHHHHHHhcc-------------------------------------------------CchHHHH
Confidence 677888999999999999876543 4444322
Q ss_pred ---HHHHHHHHhcHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHH--------HH
Q 004480 519 ---NILMKACCTDYYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQILKIMREDGMSPDVVA--------YT 587 (750)
Q Consensus 519 ---~~li~~~~~~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~--------~~ 587 (750)
-+-|.-+.+++++|..++++..+.. .||...-.--..-..+..+.++|.++.....+.|. +... |-
T Consensus 408 y~~KaRI~kH~G~l~eAa~~l~ea~elD-~aDR~INsKcAKYmLrAn~i~eA~~~~skFTr~~~--~~~~~L~~mqcmWf 484 (700)
T KOG1156|consen 408 YLVKARIFKHAGLLDEAAAWLDEAQELD-TADRAINSKCAKYMLRANEIEEAEEVLSKFTREGF--GAVNNLAEMQCMWF 484 (700)
T ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhcc-chhHHHHHHHHHHHHHccccHHHHHHHHHhhhccc--chhhhHHHhhhHHH
Confidence 2334445578999999999998864 35665555566666788999999999999988765 3322 22
Q ss_pred HH--HHHHHHcCCHHHHHHHHHHHH
Q 004480 588 TA--IKVCVRSKRLKQAFSLFEEMK 610 (750)
Q Consensus 588 ~l--i~~~~~~g~~~~A~~~~~~m~ 610 (750)
.+ ..+|.+.|++..|++-|....
T Consensus 485 ~~E~g~ay~r~~k~g~ALKkfh~i~ 509 (700)
T KOG1156|consen 485 QLEDGEAYLRQNKLGLALKKFHEIE 509 (700)
T ss_pred hHhhhHHHHHHHHHHHHHHHHhhHH
Confidence 22 246778888888777666554
No 61
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.15 E-value=1.9e-08 Score=104.15 Aligned_cols=215 Identities=16% Similarity=0.147 Sum_probs=150.5
Q ss_pred CCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhC-----C-CCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcc
Q 004480 218 PRADILFCNFVREFGKKRDLVSALRAYDASKKH-----L-SSPNMY-ICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLN 290 (750)
Q Consensus 218 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~-~~~~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~ 290 (750)
|....+...+...|...|+++.|+.++.+..+. | ..|.+. ..+.+...|...+++.+|..+|+++..
T Consensus 196 P~~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~------ 269 (508)
T KOG1840|consen 196 PERLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALT------ 269 (508)
T ss_pred chHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH------
Confidence 333466777999999999999999999887763 2 124443 344477788889999999999987643
Q ss_pred HHHHHHHHHhhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHHcCChHHHHHHHHHHHHhhhc--CCCccCHHH-HH
Q 004480 291 IYVFNSLMNVNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAK--GVLKLDVFT-YS 367 (750)
Q Consensus 291 ~~~~~~ll~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~--g~~~~~~~~-~~ 367 (750)
+++.......+.-..+++.|..+|++.|++++|...++....+... |...|.+.. ++
T Consensus 270 --------------------i~e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~ 329 (508)
T KOG1840|consen 270 --------------------IREEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLS 329 (508)
T ss_pred --------------------HHHHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHH
Confidence 3333332222333567788888999999999999998887765443 222333333 56
Q ss_pred HHHHHHHhccCHHHHHHHHHHHHHC---CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC------CCC-CH
Q 004480 368 TIVKVFADAKWWQMALKVKEDMLSA---GVTPN----TITWSSLINACANAGLVEQAMHLFEEMLQAG------CEP-NS 433 (750)
Q Consensus 368 ~li~~~~~~g~~~~a~~~~~~m~~~---g~~p~----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~------~~p-~~ 433 (750)
.+...++..+++++|..+++...+. -+.++ ..+++.|...|.+.|++++|.+++++..... ..+ ..
T Consensus 330 ~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~ 409 (508)
T KOG1840|consen 330 ELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVG 409 (508)
T ss_pred HHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhh
Confidence 6777788889999998888876542 11222 4578888888889999999998888876531 122 24
Q ss_pred HHHHHHHHHHHHhCChHHHHHHHHH
Q 004480 434 QCCNILLQACVEACQFDRAFRLFRS 458 (750)
Q Consensus 434 ~~~~~ll~~~~~~g~~~~A~~~~~~ 458 (750)
..++.+-..|.+.+++.+|.++|.+
T Consensus 410 ~~l~~la~~~~~~k~~~~a~~l~~~ 434 (508)
T KOG1840|consen 410 KPLNQLAEAYEELKKYEEAEQLFEE 434 (508)
T ss_pred HHHHHHHHHHHHhcccchHHHHHHH
Confidence 5677777788888888888888865
No 62
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.15 E-value=3.8e-06 Score=84.74 Aligned_cols=505 Identities=7% Similarity=-0.025 Sum_probs=277.2
Q ss_pred hhhHHHHHHHHhhcCChHHHHHHHHHHHHhcCChhhHHhhhhHHHHHHHHHhhhhcCchhHHHHHHHHHHhcCCCccccc
Q 004480 71 NDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLELF 150 (750)
Q Consensus 71 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~p~~~~ 150 (750)
..-+..+.+-+..+.++.-|+-+.++....+.+|...- .+...+.-.|+++.|..++..-.-.+.
T Consensus 16 ~~~~~~~~r~~l~q~~y~~a~f~adkV~~l~~dp~d~~---------~~aq~l~~~~~y~ra~~lit~~~le~~------ 80 (611)
T KOG1173|consen 16 LEKYRRLVRDALMQHRYKTALFWADKVAGLTNDPADIY---------WLAQVLYLGRQYERAAHLITTYKLEKR------ 80 (611)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHhccCChHHHH---------HHHHHHHhhhHHHHHHHHHHHhhhhhh------
Confidence 56677778888889999999999999998888887543 233446678888888877754321111
Q ss_pred cchhhhhhHHHHHHhhccCcHHHHHHHHHHHHhCCCCCcccccHHH-HHHHHHcCCChHHHHHHhhhCCCC--cchHHHH
Q 004480 151 DGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFR-IVQLCVNKPDVNLAIRYACIVPRA--DILFCNF 227 (750)
Q Consensus 151 ~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~l 227 (750)
+......... .+....++++|..++....... .| ...+.. -+... ..+.+. +..+.+ ...+..-
T Consensus 81 d~~cryL~~~---~l~~lk~~~~al~vl~~~~~~~-~~--f~yy~~~~~~~l----~~n~~~---~~~~~~~essic~lR 147 (611)
T KOG1173|consen 81 DIACRYLAAK---CLVKLKEWDQALLVLGRGHVET-NP--FSYYEKDAANTL----ELNSAG---EDLMINLESSICYLR 147 (611)
T ss_pred hHHHHHHHHH---HHHHHHHHHHHHHHhcccchhh-cc--hhhcchhhhcee----ccCccc---ccccccchhceeeee
Confidence 1112222222 2344678888888776321000 00 000000 00000 000000 000111 1122222
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc-CCHHHHHHHHHHHHhC-CCCccHHHHHHHHHhh-cCC
Q 004480 228 VREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGIC-GDYMKSRAIYEDLRSQ-NVTLNIYVFNSLMNVN-AHD 304 (750)
Q Consensus 228 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~-g~~~~A~~~~~~m~~~-g~~~~~~~~~~ll~~~-~~~ 304 (750)
...|....+.++|...|.+... .|...+.++...-... =..++-..+|+.+.-. -.+.+......+.... ++.
T Consensus 148 gk~y~al~n~~~ar~~Y~~Al~----~D~~c~Ea~~~lvs~~mlt~~Ee~~ll~~l~~a~~~~ed~e~l~~lyel~~~k~ 223 (611)
T KOG1173|consen 148 GKVYVALDNREEARDKYKEALL----ADAKCFEAFEKLVSAHMLTAQEEFELLESLDLAMLTKEDVERLEILYELKLCKN 223 (611)
T ss_pred eehhhhhccHHHHHHHHHHHHh----cchhhHHHHHHHHHHHhcchhHHHHHHhcccHHhhhhhHHHHHHHHHHhhhhhh
Confidence 3456666777888888877765 4555554444322111 1112222333321100 1112222222322221 110
Q ss_pred hH-HHHHHHHHHHHcCCCCCHhhHHHHHHHHHHcCChHHHHHHHHHHHHhhhcCCCccCHHHHHHHHHHHHhccCHHHHH
Q 004480 305 LK-FTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMAL 383 (750)
Q Consensus 305 ~~-~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~g~~~~~~~~~~~li~~~~~~g~~~~a~ 383 (750)
.+ .....-.+..-.+..-+........+-+...+++.+..++++.+.+. .++....+..-|.++...|+..+-.
T Consensus 224 ~n~~~~~r~~~~sl~~l~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~-----dpfh~~~~~~~ia~l~el~~~n~Lf 298 (611)
T KOG1173|consen 224 RNEESLTRNEDESLIGLAENLDLLAEKADRLYYGCRFKECLKITEELLEK-----DPFHLPCLPLHIACLYELGKSNKLF 298 (611)
T ss_pred ccccccccCchhhhhhhhhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhh-----CCCCcchHHHHHHHHHHhcccchHH
Confidence 00 00000000111123345555555666666777788877777777653 3455566666667777777777776
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCChHHHHHHHHHHhhcc
Q 004480 384 KVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSK 463 (750)
Q Consensus 384 ~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~ 463 (750)
.+=.+|.+.- +-...+|-++.-.|.-.|+..+|.+.|.+...-. +.=...|-.+...|+-.|.-|.|+..+....+.-
T Consensus 299 ~lsh~LV~~y-P~~a~sW~aVg~YYl~i~k~seARry~SKat~lD-~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~ 376 (611)
T KOG1173|consen 299 LLSHKLVDLY-PSKALSWFAVGCYYLMIGKYSEARRYFSKATTLD-PTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLM 376 (611)
T ss_pred HHHHHHHHhC-CCCCcchhhHHHHHHHhcCcHHHHHHHHHHhhcC-ccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhc
Confidence 6666666652 3356777777777777788888888887765432 1123456677777777777777777776543211
Q ss_pred cccccCCCCCCchhhhhhhhhhhcccccCCCCccCCCccccccccCCCCccHHHHHHHHHHHHhcHHHHHHHHHHHHHcC
Q 004480 464 TQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTDYYRVKALMNEMRTVG 543 (750)
Q Consensus 464 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~a~~l~~~m~~~~ 543 (750)
. -.--...|..+=.+..++.+.|.++|.+....
T Consensus 377 ~----------------------------------------------G~hlP~LYlgmey~~t~n~kLAe~Ff~~A~ai- 409 (611)
T KOG1173|consen 377 P----------------------------------------------GCHLPSLYLGMEYMRTNNLKLAEKFFKQALAI- 409 (611)
T ss_pred c----------------------------------------------CCcchHHHHHHHHHHhccHHHHHHHHHHHHhc-
Confidence 0 01112234444444445677777777776653
Q ss_pred CCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHC------CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC
Q 004480 544 LSPNHISWTILIDACGGSGNVEGALQILKIMRED------GMSPDVVAYTTAIKVCVRSKRLKQAFSLFEEMKHYQIQPN 617 (750)
Q Consensus 544 ~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 617 (750)
.+-|+...+-+.-...+.+.+.+|..+|...... ...-...+++.|..+|.+.++.++|+..+++.... ..-|
T Consensus 410 ~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l-~~k~ 488 (611)
T KOG1173|consen 410 APSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLL-SPKD 488 (611)
T ss_pred CCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHc-CCCc
Confidence 2235566777766666777788888887776521 01114456777777788888888888888877763 2336
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 004480 618 LVTYITLLRARSRYGSLHEVQQCLAVYQDMWKAGYKANDTYLKELIEEWC 667 (750)
Q Consensus 618 ~~t~~~li~~~~~~g~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~ 667 (750)
..++.++.-.+...|+++. |++.|.+-+ .+.||..+...++.-..
T Consensus 489 ~~~~asig~iy~llgnld~---Aid~fhKaL--~l~p~n~~~~~lL~~ai 533 (611)
T KOG1173|consen 489 ASTHASIGYIYHLLGNLDK---AIDHFHKAL--ALKPDNIFISELLKLAI 533 (611)
T ss_pred hhHHHHHHHHHHHhcChHH---HHHHHHHHH--hcCCccHHHHHHHHHHH
Confidence 7777777777777787666 455666543 56677666666665443
No 63
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.15 E-value=3.6e-08 Score=95.37 Aligned_cols=199 Identities=12% Similarity=0.017 Sum_probs=137.8
Q ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCccHHHHHHHHHhh
Q 004480 222 ILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVN 301 (750)
Q Consensus 222 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~ 301 (750)
..+..+...|...|++++|...+++..+..+ .+...+..+...+...|++++|.+.|++..+..
T Consensus 32 ~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p-~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~--------------- 95 (234)
T TIGR02521 32 KIRVQLALGYLEQGDLEVAKENLDKALEHDP-DDYLAYLALALYYQQLGELEKAEDSFRRALTLN--------------- 95 (234)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC---------------
Confidence 4567778888888888888888888876432 346677778888888888888888888776542
Q ss_pred cCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHHcCChHHHHHHHHHHHHhhhcCCCccCHHHHHHHHHHHHhccCHHH
Q 004480 302 AHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQM 381 (750)
Q Consensus 302 ~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~g~~~~~~~~~~~li~~~~~~g~~~~ 381 (750)
+.+...+..+...+...|++++|.+.++..... .........+..+...+...|++++
T Consensus 96 -------------------~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~~~~~~l~~~~~~~g~~~~ 153 (234)
T TIGR02521 96 -------------------PNNGDVLNNYGTFLCQQGKYEQAMQQFEQAIED---PLYPQPARSLENAGLCALKAGDFDK 153 (234)
T ss_pred -------------------CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhc---cccccchHHHHHHHHHHHHcCCHHH
Confidence 223445555666677777777777777776641 1112234456666677777788888
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCChHHHHHHHHHHh
Q 004480 382 ALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWT 460 (750)
Q Consensus 382 a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~ 460 (750)
|...+++..... +.+...+..+...+...|++++|...+++..+. .+.+...+..+...+...|+.++|..+.+.+.
T Consensus 154 A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 230 (234)
T TIGR02521 154 AEKYLTRALQID-PQRPESLLELAELYYLRGQYKDARAYLERYQQT-YNQTAESLWLGIRIARALGDVAAAQRYGAQLQ 230 (234)
T ss_pred HHHHHHHHHHhC-cCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 888887777653 224556777777777788888888888877765 24455666666777777788888877766654
No 64
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.15 E-value=1e-08 Score=99.31 Aligned_cols=196 Identities=12% Similarity=0.046 Sum_probs=126.1
Q ss_pred hhhHHHHHHHHhhcCChHHHHHHHHHHHHhcCChhhHHhhhhHHHHHHHHHhhhhcCchhHHHHHHHHHHhcCCCccccc
Q 004480 71 NDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLELF 150 (750)
Q Consensus 71 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~p~~~~ 150 (750)
...+..++..+...|++++|+..+++++.. .|.... .+..+...+...|++++|.+.+++..+. .|+..
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~--~p~~~~------~~~~la~~~~~~~~~~~A~~~~~~al~~--~~~~~- 99 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEH--DPDDYL------AYLALALYYQQLGELEKAEDSFRRALTL--NPNNG- 99 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CcccHH------HHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCCH-
Confidence 677888999999999999999999999887 454332 2334555688999999999999999974 33221
Q ss_pred cchhhhhhHHHHHHhhccCcHHHHHHHHHHHHhCCCCCcccccHHHHHHHHHcCCChHHHHHHhhhC----CCCcchHHH
Q 004480 151 DGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIV----PRADILFCN 226 (750)
Q Consensus 151 ~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~----~~~~~~~~~ 226 (750)
..+ ......+...|++++|.+.+++.......+.....+..++..+...|++++|...+... |.+...+..
T Consensus 100 --~~~---~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 174 (234)
T TIGR02521 100 --DVL---NNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLE 174 (234)
T ss_pred --HHH---HHHHHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHH
Confidence 122 22222344589999999999998864333333444555566666666666666655442 333445555
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 004480 227 FVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLR 283 (750)
Q Consensus 227 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 283 (750)
+...+...|++++|...+++..+. .+.+...+..+...+...|+.++|..+.+.+.
T Consensus 175 la~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 230 (234)
T TIGR02521 175 LAELYYLRGQYKDARAYLERYQQT-YNQTAESLWLGIRIARALGDVAAAQRYGAQLQ 230 (234)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 666666666666666666665554 22334444455555556666666666555543
No 65
>PRK12370 invasion protein regulator; Provisional
Probab=99.14 E-value=1.8e-08 Score=109.86 Aligned_cols=212 Identities=9% Similarity=-0.035 Sum_probs=105.9
Q ss_pred CcHHHHHHHHHHHHhCCCCCcccccHHHHHHHHHc---------CCChHHHHHHhhhC----CCCcchHHHHHHHHHhcC
Q 004480 169 GEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVN---------KPDVNLAIRYACIV----PRADILFCNFVREFGKKR 235 (750)
Q Consensus 169 g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~---------~~~~~~A~~~~~~~----~~~~~~~~~l~~~~~~~g 235 (750)
+..++|+.+|++.++.. |+....+..++.++.. .+++++|...+++. |.+..++..+...+...|
T Consensus 275 ~~~~~A~~~~~~Al~ld--P~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g 352 (553)
T PRK12370 275 YSLQQALKLLTQCVNMS--PNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNNPQALGLLGLINTIHS 352 (553)
T ss_pred HHHHHHHHHHHHHHhcC--CccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcc
Confidence 45678888888888754 7766666555544331 12244444444332 444445555555555555
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCccHHHHHHHHHhhcCChHHHHHHHHHH
Q 004480 236 DLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKFTLEVYKNM 315 (750)
Q Consensus 236 ~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~a~~~~~~m 315 (750)
++++|...|++..+.++ .+...+..+...+...|++++|...+++..+....
T Consensus 353 ~~~~A~~~~~~Al~l~P-~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~--------------------------- 404 (553)
T PRK12370 353 EYIVGSLLFKQANLLSP-ISADIKYYYGWNLFMAGQLEEALQTINECLKLDPT--------------------------- 404 (553)
T ss_pred CHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC---------------------------
Confidence 55555555555554321 12334445555555555555555555555443211
Q ss_pred HHcCCCCCHhhHHHHHHHHHHcCChHHHHHHHHHHHHhhhcCCCcc-CHHHHHHHHHHHHhccCHHHHHHHHHHHHHCCC
Q 004480 316 QKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKL-DVFTYSTIVKVFADAKWWQMALKVKEDMLSAGV 394 (750)
Q Consensus 316 ~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~g~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~ 394 (750)
+...+..++..+...|++++|...++++... .+| +...+..+..++...|++++|...+.++...
T Consensus 405 -------~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~-----~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~-- 470 (553)
T PRK12370 405 -------RAAAGITKLWITYYHTGIDDAIRLGDELRSQ-----HLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQ-- 470 (553)
T ss_pred -------ChhhHHHHHHHHHhccCHHHHHHHHHHHHHh-----ccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhc--
Confidence 1122222333344456666666666655431 112 2333445555556666666666666655433
Q ss_pred CCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004480 395 TPN-TITWSSLINACANAGLVEQAMHLFEEMLQ 426 (750)
Q Consensus 395 ~p~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 426 (750)
.|+ ....+.+...|+..| +.|...++.+.+
T Consensus 471 ~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~ 501 (553)
T PRK12370 471 EITGLIAVNLLYAEYCQNS--ERALPTIREFLE 501 (553)
T ss_pred cchhHHHHHHHHHHHhccH--HHHHHHHHHHHH
Confidence 222 223334444445555 355555555443
No 66
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.12 E-value=7.7e-06 Score=82.99 Aligned_cols=446 Identities=14% Similarity=0.094 Sum_probs=246.5
Q ss_pred hHHHHHHhhccCcHHHHHHHHHHHHhCCCCCcccccHHHHHHHHHcCCChHHHHHHhhhCCC--CcchH-HHHHHHHHhc
Q 004480 158 LKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPR--ADILF-CNFVREFGKK 234 (750)
Q Consensus 158 l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~-~~l~~~~~~~ 234 (750)
+..-.......|++++|++...+++..+ |++......-+-++.+.+++++|+.+.+.-+. ....+ .--+...-+.
T Consensus 15 l~t~ln~~~~~~e~e~a~k~~~Kil~~~--pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~~~~~~~fEKAYc~Yrl 92 (652)
T KOG2376|consen 15 LLTDLNRHGKNGEYEEAVKTANKILSIV--PDDEDAIRCKVVALIQLDKYEDALKLIKKNGALLVINSFFFEKAYCEYRL 92 (652)
T ss_pred HHHHHHHhccchHHHHHHHHHHHHHhcC--CCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhhhcchhhHHHHHHHHHc
Confidence 3333445666899999999999999866 88888888888899999999999977665442 11112 2223334478
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-ccHHHHHHHHHhhcCChHHHHHHHH
Q 004480 235 RDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVT-LNIYVFNSLMNVNAHDLKFTLEVYK 313 (750)
Q Consensus 235 g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-~~~~~~~~ll~~~~~~~~~a~~~~~ 313 (750)
++.++|+..++-... .+..+...-...+-+.|++++|+.+|+.+.+.+.. .|...-..++.+-+ +... .
T Consensus 93 nk~Dealk~~~~~~~----~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a-----~l~~-~ 162 (652)
T KOG2376|consen 93 NKLDEALKTLKGLDR----LDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAA-----ALQV-Q 162 (652)
T ss_pred ccHHHHHHHHhcccc----cchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHH-----hhhH-H
Confidence 999999999983222 23446666667788999999999999999877543 22222333332211 1111 1
Q ss_pred HHHHcCCCCCHhhHHHHHH---HHHHcCChHHHHHHHHHHHHhhhc----CCCc-cCH-----HHHHHHHHHHHhccCHH
Q 004480 314 NMQKLGVMADMASYNILLK---ACCLAGNTVLAQEIYGEVKHLEAK----GVLK-LDV-----FTYSTIVKVFADAKWWQ 380 (750)
Q Consensus 314 ~m~~~g~~~~~~~~~~ll~---~~~~~g~~~~A~~~~~~~~~~~~~----g~~~-~~~-----~~~~~li~~~~~~g~~~ 380 (750)
.+......| ..+|..+.+ .+...|++.+|+++++...+.... +... -+. ..-..|.-.+-..|+-+
T Consensus 163 ~~q~v~~v~-e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ 241 (652)
T KOG2376|consen 163 LLQSVPEVP-EDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTA 241 (652)
T ss_pred HHHhccCCC-cchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchH
Confidence 222222233 335555554 445779999999999988443221 1001 111 12234455677899999
Q ss_pred HHHHHHHHHHHCCCCCCHHH----HHHHHHHHHhcCCH-H-HHHHHHHHHHHcC-------C---CCCHHHHHH-HHHHH
Q 004480 381 MALKVKEDMLSAGVTPNTIT----WSSLINACANAGLV-E-QAMHLFEEMLQAG-------C---EPNSQCCNI-LLQAC 443 (750)
Q Consensus 381 ~a~~~~~~m~~~g~~p~~~~----~~~li~~~~~~g~~-~-~a~~~~~~m~~~~-------~---~p~~~~~~~-ll~~~ 443 (750)
+|..++...+...+ +|... -|.|+ ++....++ + .++..++...... + .-.....|. ++..|
T Consensus 242 ea~~iy~~~i~~~~-~D~~~~Av~~NNLv-a~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~ 319 (652)
T KOG2376|consen 242 EASSIYVDIIKRNP-ADEPSLAVAVNNLV-ALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALF 319 (652)
T ss_pred HHHHHHHHHHHhcC-CCchHHHHHhcchh-hhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999998754 34322 22222 22222221 1 1222222211100 0 011111222 22222
Q ss_pred HHhCChHHHHHHHHHHhhcccccccCCCCCCchhhhhhhhhhhcccccCCCCccCCCccccccccCCCCccHHHHHHHHH
Q 004480 444 VEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMK 523 (750)
Q Consensus 444 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~ 523 (750)
.+..+.+.++-..... ..|... +.+++.
T Consensus 320 --tnk~~q~r~~~a~lp~-------------------------------------------------~~p~~~-~~~ll~ 347 (652)
T KOG2376|consen 320 --TNKMDQVRELSASLPG-------------------------------------------------MSPESL-FPILLQ 347 (652)
T ss_pred --hhhHHHHHHHHHhCCc-------------------------------------------------cCchHH-HHHHHH
Confidence 2233334333332211 123322 333333
Q ss_pred HHHh----cHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHH--------HHHHCCCCCCHHHHHHHHH
Q 004480 524 ACCT----DYYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQILK--------IMREDGMSPDVVAYTTAIK 591 (750)
Q Consensus 524 ~~~~----~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~--------~m~~~g~~p~~~~~~~li~ 591 (750)
.+.+ ....+..++...-+....-...+--.++......|+++.|.+++. .+.+.+..|-. ...+..
T Consensus 348 ~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~~~~P~~--V~aiv~ 425 (652)
T KOG2376|consen 348 EATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSILEAKHLPGT--VGAIVA 425 (652)
T ss_pred HHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhhccChhH--HHHHHH
Confidence 3321 244556666555554322234455566677778888888888888 55554444444 344555
Q ss_pred HHHHcCCHHHHHHHHHHHHHC--CCCCCHH----HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 004480 592 VCVRSKRLKQAFSLFEEMKHY--QIQPNLV----TYITLLRARSRYGSLHEVQQCLAVYQDMWKAGYKANDTYLKELIEE 665 (750)
Q Consensus 592 ~~~~~g~~~~A~~~~~~m~~~--g~~p~~~----t~~~li~~~~~~g~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~ 665 (750)
.+.+.++.+-|.+++.+.... .-.+... ++.-+...-.++|+.++ |..+++++++.. ++|..+...++.+
T Consensus 426 l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~e---a~s~leel~k~n-~~d~~~l~~lV~a 501 (652)
T KOG2376|consen 426 LYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEE---ASSLLEELVKFN-PNDTDLLVQLVTA 501 (652)
T ss_pred HHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHH---HHHHHHHHHHhC-CchHHHHHHHHHH
Confidence 666666666666666665421 0112222 23333333345676544 666788887754 3567777788888
Q ss_pred HHhhhhhhhhc
Q 004480 666 WCEGVIQDKNQ 676 (750)
Q Consensus 666 ~~~~~~~~~~~ 676 (750)
|++-+...+..
T Consensus 502 ~~~~d~eka~~ 512 (652)
T KOG2376|consen 502 YARLDPEKAES 512 (652)
T ss_pred HHhcCHHHHHH
Confidence 88755444443
No 67
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.12 E-value=1.6e-06 Score=81.90 Aligned_cols=183 Identities=10% Similarity=-0.000 Sum_probs=114.7
Q ss_pred HHHhhcCChHHHHHHHHHHHHhcCChh-hHHhhhhHHHHHHHHHhhhhcCchhHHHHHHHHHHhcCCCccccccchhhhh
Q 004480 79 SKLAKDGRLEEFAMIVESVVVSEGNVS-KFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLELFDGSGFKL 157 (750)
Q Consensus 79 ~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~p~~~~~~~~~~~ 157 (750)
+-+..+.++..|+.+++.....+.+.+ ..+. .+...+.+.|++++|+..|.-+.+..-.|.. +.+
T Consensus 30 edfls~rDytGAislLefk~~~~~EEE~~~~l--------Wia~C~fhLgdY~~Al~~Y~~~~~~~~~~~e------l~v 95 (557)
T KOG3785|consen 30 EDFLSNRDYTGAISLLEFKLNLDREEEDSLQL--------WIAHCYFHLGDYEEALNVYTFLMNKDDAPAE------LGV 95 (557)
T ss_pred HHHHhcccchhHHHHHHHhhccchhhhHHHHH--------HHHHHHHhhccHHHHHHHHHHHhccCCCCcc------cch
Confidence 445558899999999988776643322 2222 2334466999999999999988875433322 222
Q ss_pred hHHHHHHhhccCcHHHHHHHHHHHHhCCCCCcccccHHHHHHHHHcCCChHHHHHHhhhCCCCcchHHHHHHHHHhcCCH
Q 004480 158 LKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRADILFCNFVREFGKKRDL 237 (750)
Q Consensus 158 l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~l~~~~~~~g~~ 237 (750)
.+. |+.+ -.|.+.+|..+-.+. |+.+.....+.....+.++-++-..+.+.+.+...--.+|....-.+-.+
T Consensus 96 nLA-cc~F-yLg~Y~eA~~~~~ka------~k~pL~~RLlfhlahklndEk~~~~fh~~LqD~~EdqLSLAsvhYmR~HY 167 (557)
T KOG3785|consen 96 NLA-CCKF-YLGQYIEAKSIAEKA------PKTPLCIRLLFHLAHKLNDEKRILTFHSSLQDTLEDQLSLASVHYMRMHY 167 (557)
T ss_pred hHH-HHHH-HHHHHHHHHHHHhhC------CCChHHHHHHHHHHHHhCcHHHHHHHHHHHhhhHHHHHhHHHHHHHHHHH
Confidence 222 2222 268899998876653 23333334455555567777777777777666555555666655555678
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHH-HHHhcCCHHHHHHHHHHHHhC
Q 004480 238 VSALRAYDASKKHLSSPNMYICRTIID-VCGICGDYMKSRAIYEDLRSQ 285 (750)
Q Consensus 238 ~~A~~~~~~~~~~~~~~~~~~~~~li~-~~~~~g~~~~A~~~~~~m~~~ 285 (750)
.+|+.+|.++...+ |+....|.-+. +|.+..-++-+.+++.-..+.
T Consensus 168 QeAIdvYkrvL~dn--~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q 214 (557)
T KOG3785|consen 168 QEAIDVYKRVLQDN--PEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQ 214 (557)
T ss_pred HHHHHHHHHHHhcC--hhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHh
Confidence 88999988887643 55555555444 355666666677776665544
No 68
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.11 E-value=5.7e-06 Score=84.82 Aligned_cols=423 Identities=12% Similarity=0.048 Sum_probs=197.4
Q ss_pred cCcHHHHHHHHHHHHhCCCCCcccccHHHHHHHHHcCCChHHHHHHhhhC----CCCcchHHHHHHHHHhcCCHHHHHHH
Q 004480 168 SGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIV----PRADILFCNFVREFGKKRDLVSALRA 243 (750)
Q Consensus 168 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~----~~~~~~~~~l~~~~~~~g~~~~A~~~ 243 (750)
.+++...+++.+.++... |...++....+-.+...|+.++|....... +.+..-|..+.-.+....++++|++.
T Consensus 20 ~kQYkkgLK~~~~iL~k~--~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK~Y~eaiKc 97 (700)
T KOG1156|consen 20 TKQYKKGLKLIKQILKKF--PEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDKKYDEAIKC 97 (700)
T ss_pred HHHHHhHHHHHHHHHHhC--CccchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHHhhhhhHHHHHHH
Confidence 567777777777777633 555555665666666677777777665543 33445666666666677777777777
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCccH-HHHHHHHHh--hcCChHHHHHHHHHHHHcC-
Q 004480 244 YDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNI-YVFNSLMNV--NAHDLKFTLEVYKNMQKLG- 319 (750)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~-~~~~~ll~~--~~~~~~~a~~~~~~m~~~g- 319 (750)
|......+. -|...|.-+.-.-++.|+++.......++.+. .|.. ..|..+..+ ..|+...|..+.++..+..
T Consensus 98 y~nAl~~~~-dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql--~~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~ 174 (700)
T KOG1156|consen 98 YRNALKIEK-DNLQILRDLSLLQIQMRDYEGYLETRNQLLQL--RPSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQN 174 (700)
T ss_pred HHHHHhcCC-CcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHh--hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 777766322 24445554444445566666666666555544 2222 223322222 2356666666666665543
Q ss_pred CCCCHhhHHHHHH------HHHHcCChHHHHHHHHHHHHhhhcCCCccCHHH-HHHHHHHHHhccCHHHHHHHHHHHHHC
Q 004480 320 VMADMASYNILLK------ACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFT-YSTIVKVFADAKWWQMALKVKEDMLSA 392 (750)
Q Consensus 320 ~~~~~~~~~~ll~------~~~~~g~~~~A~~~~~~~~~~~~~g~~~~~~~~-~~~li~~~~~~g~~~~a~~~~~~m~~~ 392 (750)
..|+...+..... ...+.|..++|.+.+...... ..|... -.+-...+.+.+++++|..++..++..
T Consensus 175 ~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~------i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~r 248 (700)
T KOG1156|consen 175 TSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQ------IVDKLAFEETKADLLMKLGQLEEAVKVYRRLLER 248 (700)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhH------HHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhh
Confidence 2345444443322 233455556665555443321 122222 233344566677777777777777665
Q ss_pred CCCCCHHHHHHH-HHHHHhcCCHHHHH-HHHHHHHHcC---CCCCHHHHHHHHHHHHHhCChHHHHHHHHHHhhcccccc
Q 004480 393 GVTPNTITWSSL-INACANAGLVEQAM-HLFEEMLQAG---CEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVA 467 (750)
Q Consensus 393 g~~p~~~~~~~l-i~~~~~~g~~~~a~-~~~~~m~~~~---~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~ 467 (750)
.||..-|... ..++.+..+.-+++ .+|....+.- -.|-....+.+. -..-.+....++..+...|++.-
T Consensus 249 --nPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e~p~Rlplsvl~----~eel~~~vdkyL~~~l~Kg~p~v 322 (700)
T KOG1156|consen 249 --NPDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPRHECPRRLPLSVLN----GEELKEIVDKYLRPLLSKGVPSV 322 (700)
T ss_pred --CchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcccccchhccHHHhC----cchhHHHHHHHHHHHhhcCCCch
Confidence 3444444433 33333333333333 4444443321 011111111110 01111222233333333332211
Q ss_pred cCCCCCCchhhhhh--hhhhhcccccCCCCccCCCccccccc-cCCCCccHHHHHHHHHH--H--HhcHHHHHHHHHHHH
Q 004480 468 LGEDYDGNTDRISN--MEHKDKQSITNTPNFVPNSHYSSFDK-RFSFKPTTTTYNILMKA--C--CTDYYRVKALMNEMR 540 (750)
Q Consensus 468 ~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~p~~~~~~~li~~--~--~~~~~~a~~l~~~m~ 540 (750)
.... ...... -.......++...+.+.......... ..--+|....|...-.+ + .++++.|...++...
T Consensus 323 f~dl----~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AI 398 (700)
T KOG1156|consen 323 FKDL----RSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAI 398 (700)
T ss_pred hhhh----HHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHh
Confidence 0000 000000 00000000011111111111111111 11124444444333222 1 235666666666666
Q ss_pred HcCCCCCHH-HHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC
Q 004480 541 TVGLSPNHI-SWTILIDACGGSGNVEGALQILKIMREDGMSPDVVAYTTAIKVCVRSKRLKQAFSLFEEMKHYQI 614 (750)
Q Consensus 541 ~~~~~p~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 614 (750)
.+ .|+.+ -|-.=...+.+.|++++|..++++..+.. .||...-..-..-..++.+.++|.++.....+.|.
T Consensus 399 dH--TPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD-~aDR~INsKcAKYmLrAn~i~eA~~~~skFTr~~~ 470 (700)
T KOG1156|consen 399 DH--TPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELD-TADRAINSKCAKYMLRANEIEEAEEVLSKFTREGF 470 (700)
T ss_pred cc--CchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcc-chhHHHHHHHHHHHHHccccHHHHHHHHHhhhccc
Confidence 53 34433 34444466666677777777776666543 23444333444555566667777776666666554
No 69
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.07 E-value=6.2e-08 Score=86.28 Aligned_cols=197 Identities=13% Similarity=0.014 Sum_probs=151.6
Q ss_pred hhhHHHHHHHHhhcCChHHHHHHHHHHHHhcCChhhHHhhhhHHHHHHHHHhhhhcCchhHHHHHHHHHHhcCCCccccc
Q 004480 71 NDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLELF 150 (750)
Q Consensus 71 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~p~~~~ 150 (750)
......|+-.|...|++..|..-+++++++ +|+.+...+....+ |.+.|..+.|.+.|+++++ +.|+.-.
T Consensus 35 a~arlqLal~YL~~gd~~~A~~nlekAL~~--DPs~~~a~~~~A~~------Yq~~Ge~~~A~e~YrkAls--l~p~~Gd 104 (250)
T COG3063 35 AKARLQLALGYLQQGDYAQAKKNLEKALEH--DPSYYLAHLVRAHY------YQKLGENDLADESYRKALS--LAPNNGD 104 (250)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CcccHHHHHHHHHH------HHHcCChhhHHHHHHHHHh--cCCCccc
Confidence 567778889999999999999999999999 88877665555555 8899999999999999998 5665543
Q ss_pred cchhhhhhHHHHHHhhccCcHHHHHHHHHHHHhCCCCCcccccHHHHHHHHHcCCChHHHHHHhhhC----CCCcchHHH
Q 004480 151 DGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIV----PRADILFCN 226 (750)
Q Consensus 151 ~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~----~~~~~~~~~ 226 (750)
...-|..+ +..+|++++|...|++.......+....++.+++-+..+.|+.+.|..++++. |..+.+...
T Consensus 105 VLNNYG~F------LC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~ 178 (250)
T COG3063 105 VLNNYGAF------LCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLE 178 (250)
T ss_pred hhhhhhHH------HHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHH
Confidence 32333333 23389999999999998887766777777888888888888888888877663 556667777
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 004480 227 FVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRS 284 (750)
Q Consensus 227 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 284 (750)
+.....+.|++-.|...++.....+. ++..+.-..|+.-...|+.+.+.+.=.++.+
T Consensus 179 ~a~~~~~~~~y~~Ar~~~~~~~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r 235 (250)
T COG3063 179 LARLHYKAGDYAPARLYLERYQQRGG-AQAESLLLGIRIAKRLGDRAAAQRYQAQLQR 235 (250)
T ss_pred HHHHHHhcccchHHHHHHHHHHhccc-ccHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 77888888888888888888777665 7777777777777777887777665555544
No 70
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.06 E-value=3.1e-07 Score=92.29 Aligned_cols=280 Identities=13% Similarity=0.070 Sum_probs=195.9
Q ss_pred hhHHHHHHhhccCcHHHHHHHHHHHHhCCCCCcccccHHHHHHHHHcCCChH----HHHHHhhhCCCCcchHHHHHHHHH
Q 004480 157 LLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVN----LAIRYACIVPRADILFCNFVREFG 232 (750)
Q Consensus 157 ~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~----~A~~~~~~~~~~~~~~~~l~~~~~ 232 (750)
++...+..+-..+++.+-.++.+.+.+.. |.....+..-+..+...|+.. .+.++.+..|+...+|.++.-.|.
T Consensus 246 ll~~~ad~~y~~c~f~~c~kit~~lle~d--pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~yP~~a~sW~aVg~YYl 323 (611)
T KOG1173|consen 246 LLAEKADRLYYGCRFKECLKITEELLEKD--PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLYPSKALSWFAVGCYYL 323 (611)
T ss_pred HHHHHHHHHHHcChHHHHHHHhHHHHhhC--CCCcchHHHHHHHHHHhcccchHHHHHHHHHHhCCCCCcchhhHHHHHH
Confidence 34444444445778888888888777644 444443443344555555543 344556666788888888888888
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhC--CCCccHHHHHHHHHhhcCChHHHH
Q 004480 233 KKRDLVSALRAYDASKKHLSSPN-MYICRTIIDVCGICGDYMKSRAIYEDLRSQ--NVTLNIYVFNSLMNVNAHDLKFTL 309 (750)
Q Consensus 233 ~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--g~~~~~~~~~~ll~~~~~~~~~a~ 309 (750)
-.|++.+|++.|.+.... .|. ...|-.+...|.-.|..++|...|...-+. |.. -...|..+=....++.+.|.
T Consensus 324 ~i~k~seARry~SKat~l--D~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~h-lP~LYlgmey~~t~n~kLAe 400 (611)
T KOG1173|consen 324 MIGKYSEARRYFSKATTL--DPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCH-LPSLYLGMEYMRTNNLKLAE 400 (611)
T ss_pred HhcCcHHHHHHHHHHhhc--CccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCc-chHHHHHHHHHHhccHHHHH
Confidence 788888888888876652 232 346777888888888888888877766543 211 12233333334456778888
Q ss_pred HHHHHHHHcCCCCCHhhHHHHHHHHHHcCChHHHHHHHHHHHHhhhcC-CCc-cCHHHHHHHHHHHHhccCHHHHHHHHH
Q 004480 310 EVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKG-VLK-LDVFTYSTIVKVFADAKWWQMALKVKE 387 (750)
Q Consensus 310 ~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~g-~~~-~~~~~~~~li~~~~~~g~~~~a~~~~~ 387 (750)
+.|.+..... +-|+..++-+.-.....+.+.+|..+|+......+.- .-. .-..+++.|..+|.+.+++++|+..++
T Consensus 401 ~Ff~~A~ai~-P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q 479 (611)
T KOG1173|consen 401 KFFKQALAIA-PSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQ 479 (611)
T ss_pred HHHHHHHhcC-CCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHH
Confidence 8887776543 5578888888888888899999999998876422111 001 123468888999999999999999999
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Q 004480 388 DMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVE 445 (750)
Q Consensus 388 ~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~ 445 (750)
+.+... +-+..++.++.-.|...|+++.|.+.|.+.+. +.|+..+...++..+..
T Consensus 480 ~aL~l~-~k~~~~~asig~iy~llgnld~Aid~fhKaL~--l~p~n~~~~~lL~~aie 534 (611)
T KOG1173|consen 480 KALLLS-PKDASTHASIGYIYHLLGNLDKAIDHFHKALA--LKPDNIFISELLKLAIE 534 (611)
T ss_pred HHHHcC-CCchhHHHHHHHHHHHhcChHHHHHHHHHHHh--cCCccHHHHHHHHHHHH
Confidence 998874 44889999999999999999999999999875 48888887777775544
No 71
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.06 E-value=3.7e-05 Score=78.84 Aligned_cols=345 Identities=11% Similarity=0.114 Sum_probs=181.5
Q ss_pred ccchhhccccCCcchhhhHHHHHHHHhhcCChHHHHHHHHHHHHhcCChhhHHhhhhHHHHHHHHHhhhhcCchhHHHHH
Q 004480 56 QTALLSTVRRDLSSRNDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGV 135 (750)
Q Consensus 56 ~~~~~~~l~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~ 135 (750)
.++|-..+.++|-+ ...|...+..-.. .-.+.-..+|+++... -|.++..+.. |.+.
T Consensus 13 DvpfEeEilRnp~s-vk~W~RYIe~k~~-sp~k~~~~lYERal~~--lp~sykiW~~----------YL~~--------- 69 (835)
T KOG2047|consen 13 DVPFEEEILRNPFS-VKCWLRYIEHKAG-SPDKQRNLLYERALKE--LPGSYKIWYD----------YLKA--------- 69 (835)
T ss_pred ccchHHHHHcCchh-HHHHHHHHHHHcc-CChHHHHHHHHHHHHH--CCCchHHHHH----------HHHH---------
Confidence 45576778888988 8888888887765 3334566677888777 4554433222 1110
Q ss_pred HHHHHhcCCCccccccchhhhhhHHHHHHhhccCcHHHHHHHHHHHHhCCCCCcccccHHHHHHHHHcCCChHHHHHHhh
Q 004480 136 LKKLNELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYAC 215 (750)
Q Consensus 136 l~~~~~~~~~p~~~~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 215 (750)
++..-.+..|... .+..+ +.-++.++-.+.+| +..|..-++.+..++++....+.|.
T Consensus 70 -R~~~vk~~~~T~~----~~~~v---------n~c~er~lv~mHkm---------pRIwl~Ylq~l~~Q~~iT~tR~tfd 126 (835)
T KOG2047|consen 70 -RRAQVKHLCPTDP----AYESV---------NNCFERCLVFMHKM---------PRIWLDYLQFLIKQGLITRTRRTFD 126 (835)
T ss_pred -HHHHhhccCCCCh----HHHHH---------HHHHHHHHHHHhcC---------CHHHHHHHHHHHhcchHHHHHHHHH
Confidence 1111112222111 11111 11122222222211 1123333444444455544444443
Q ss_pred hC----C--CCcchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC----
Q 004480 216 IV----P--RADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQ---- 285 (750)
Q Consensus 216 ~~----~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---- 285 (750)
.. | ....+|...+......+-.+-+.+++++.++ .++..-+.-+..+++.+++++|-+.+...+..
T Consensus 127 rALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk----~~P~~~eeyie~L~~~d~~~eaa~~la~vln~d~f~ 202 (835)
T KOG2047|consen 127 RALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLK----VAPEAREEYIEYLAKSDRLDEAAQRLATVLNQDEFV 202 (835)
T ss_pred HHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHh----cCHHHHHHHHHHHHhccchHHHHHHHHHhcCchhhh
Confidence 31 2 1235566666666666666677777777665 23333555666666777777777666665422
Q ss_pred --CCCccHHHHHHHHHhhcCChHH-----HHHHHHHHHHcCCCCC--HhhHHHHHHHHHHcCChHHHHHHHHHHHHhhhc
Q 004480 286 --NVTLNIYVFNSLMNVNAHDLKF-----TLEVYKNMQKLGVMAD--MASYNILLKACCLAGNTVLAQEIYGEVKHLEAK 356 (750)
Q Consensus 286 --g~~~~~~~~~~ll~~~~~~~~~-----a~~~~~~m~~~g~~~~--~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~ 356 (750)
..+-+...|.-+....+.+.+. ...+++.+... -+| ...|++|.+-|.+.|.+++|..+|++....
T Consensus 203 sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~r--ftDq~g~Lw~SLAdYYIr~g~~ekarDvyeeai~~--- 277 (835)
T KOG2047|consen 203 SKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRR--FTDQLGFLWCSLADYYIRSGLFEKARDVYEEAIQT--- 277 (835)
T ss_pred hhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhccc--CcHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHh---
Confidence 1233444555554443332222 22333333332 233 346778888888888888888888876641
Q ss_pred CCCccCHHHHHHHHHHHHhcc----------------------CHHHHHHHHHHHHHCCC-----------CCCHHHHHH
Q 004480 357 GVLKLDVFTYSTIVKVFADAK----------------------WWQMALKVKEDMLSAGV-----------TPNTITWSS 403 (750)
Q Consensus 357 g~~~~~~~~~~~li~~~~~~g----------------------~~~~a~~~~~~m~~~g~-----------~p~~~~~~~ 403 (750)
..+..-|+.+.++|+... +++-.+.-|+.+...+. +-++..|..
T Consensus 278 ---v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~~lNsVlLRQn~~nV~eW~k 354 (835)
T KOG2047|consen 278 ---VMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRPLLLNSVLLRQNPHNVEEWHK 354 (835)
T ss_pred ---heehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccchHHHHHHHhcCCccHHHHHh
Confidence 233444444444444221 12233344444443321 123333433
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCC------HHHHHHHHHHHHHhCChHHHHHHHHHHhh
Q 004480 404 LINACANAGLVEQAMHLFEEMLQAGCEPN------SQCCNILLQACVEACQFDRAFRLFRSWTL 461 (750)
Q Consensus 404 li~~~~~~g~~~~a~~~~~~m~~~~~~p~------~~~~~~ll~~~~~~g~~~~A~~~~~~~~~ 461 (750)
-+. ...|+..+-...+.+..+. +.|- ...|..+.+.|...|+++.|..+|++...
T Consensus 355 RV~--l~e~~~~~~i~tyteAv~~-vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~ 415 (835)
T KOG2047|consen 355 RVK--LYEGNAAEQINTYTEAVKT-VDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATK 415 (835)
T ss_pred hhh--hhcCChHHHHHHHHHHHHc-cCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhc
Confidence 333 2346677777778777764 2221 24578888899999999999999988654
No 72
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.05 E-value=8.8e-06 Score=82.58 Aligned_cols=461 Identities=11% Similarity=0.016 Sum_probs=242.1
Q ss_pred HHHHHHHhhcCChHHHHHHHHHHHHhcCChhhHHhhhhHHHHHHHHHhhhhcCchhHHHHHHHHHHhcCCCccccccchh
Q 004480 75 ADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLELFDGSG 154 (750)
Q Consensus 75 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~p~~~~~~~~ 154 (750)
.+=+..+..+|++++|.....+++..++++. +++-+=+.++.+.++|++|+.+.+.=.. .. .++..
T Consensus 16 ~t~ln~~~~~~e~e~a~k~~~Kil~~~pdd~--------~a~~cKvValIq~~ky~~ALk~ikk~~~--~~----~~~~~ 81 (652)
T KOG2376|consen 16 LTDLNRHGKNGEYEEAVKTANKILSIVPDDE--------DAIRCKVVALIQLDKYEDALKLIKKNGA--LL----VINSF 81 (652)
T ss_pred HHHHHHhccchHHHHHHHHHHHHHhcCCCcH--------hhHhhhHhhhhhhhHHHHHHHHHHhcch--hh----hcchh
Confidence 3445666778999999999999999865433 3344556667899999999955443221 01 11111
Q ss_pred hhhhHHHHHHhhccCcHHHHHHHHHHHHhCCCCCcccccHHHHHHHHHcCCChHHHHHHhhhC-CCCcchHHHHHHH-HH
Q 004480 155 FKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIV-PRADILFCNFVRE-FG 232 (750)
Q Consensus 155 ~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~-~~~~~~~~~l~~~-~~ 232 (750)
+ +-++++.| +.++.++|+..++ +..+.+.-+...-.+.+-+.+++++|+.+|..+ ..+...+...+.+ +.
T Consensus 82 ~--fEKAYc~Y-rlnk~Dealk~~~-----~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~ 153 (652)
T KOG2376|consen 82 F--FEKAYCEY-RLNKLDEALKTLK-----GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLL 153 (652)
T ss_pred h--HHHHHHHH-HcccHHHHHHHHh-----cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHH
Confidence 1 34555544 4799999999988 333555545666678888999999999999887 3332222222211 11
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHHHHHHH---HHHHHhcCCHHHHHHHHHHHHhC-------CCC--ccHHHHHHHHH-
Q 004480 233 KKRDLVSALRAYDASKKHLSSPNMYICRTI---IDVCGICGDYMKSRAIYEDLRSQ-------NVT--LNIYVFNSLMN- 299 (750)
Q Consensus 233 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l---i~~~~~~g~~~~A~~~~~~m~~~-------g~~--~~~~~~~~ll~- 299 (750)
..+-...+. +.+... ..| ..+|..+ .-.+...|++.+|+++++..... +-. -+...=-..|+
T Consensus 154 a~~a~l~~~-~~q~v~---~v~-e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~Irv 228 (652)
T KOG2376|consen 154 AVAAALQVQ-LLQSVP---EVP-EDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRV 228 (652)
T ss_pred HHHHhhhHH-HHHhcc---CCC-cchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHH
Confidence 111111111 222221 223 2233333 33466789999999999887221 111 11111112222
Q ss_pred ------hhcCChHHHHHHHHHHHHcCCCCCHh----hHHHHHHHHHHcCChH-HHHHHHHHHHHhhhcCC------CccC
Q 004480 300 ------VNAHDLKFTLEVYKNMQKLGVMADMA----SYNILLKACCLAGNTV-LAQEIYGEVKHLEAKGV------LKLD 362 (750)
Q Consensus 300 ------~~~~~~~~a~~~~~~m~~~g~~~~~~----~~~~ll~~~~~~g~~~-~A~~~~~~~~~~~~~g~------~~~~ 362 (750)
-..|+.++|..+|...++.. ++|.. .-|.|+..-....-++ .++..++.......... -...
T Consensus 229 QlayVlQ~~Gqt~ea~~iy~~~i~~~-~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~ 307 (652)
T KOG2376|consen 229 QLAYVLQLQGQTAEASSIYVDIIKRN-PADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQ 307 (652)
T ss_pred HHHHHHHHhcchHHHHHHHHHHHHhc-CCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 13488999999999998876 34442 2333333222221122 12222222211000000 0011
Q ss_pred HHHH-HHHHHHHHhccCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh--cCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 004480 363 VFTY-STIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACAN--AGLVEQAMHLFEEMLQAGCEPNSQCCNIL 439 (750)
Q Consensus 363 ~~~~-~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~--~g~~~~a~~~~~~m~~~~~~p~~~~~~~l 439 (750)
.+.. +.++..|. +..+.+.++-.... +..| ...+.+++..+.+ ......+.+++...-+..-.-...+.-.+
T Consensus 308 ~i~~N~~lL~l~t--nk~~q~r~~~a~lp--~~~p-~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~ 382 (652)
T KOG2376|consen 308 AIYRNNALLALFT--NKMDQVRELSASLP--GMSP-ESLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLR 382 (652)
T ss_pred HHHHHHHHHHHHh--hhHHHHHHHHHhCC--ccCc-hHHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHH
Confidence 1111 22222222 22223333222221 1122 3445555554433 22467777777777665322234556666
Q ss_pred HHHHHHhCChHHHHHHHHHHhhcccccccCCCCCCchhhhhhhhhhhcccccCCCCccCCCccccccccCCCCccHHHHH
Q 004480 440 LQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYN 519 (750)
Q Consensus 440 l~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~ 519 (750)
+......|+++.|.+++........ ..+...+..|..+.+-
T Consensus 383 aQl~is~gn~~~A~~il~~~~~~~~---------------------------------------ss~~~~~~~P~~V~ai 423 (652)
T KOG2376|consen 383 AQLKISQGNPEVALEILSLFLESWK---------------------------------------SSILEAKHLPGTVGAI 423 (652)
T ss_pred HHHHHhcCCHHHHHHHHHHHhhhhh---------------------------------------hhhhhhccChhHHHHH
Confidence 7778889999999999984431110 0011222355555554
Q ss_pred HHHHHHHhcHHHHHHHHHHHHHc--CCCCCHH----HHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 004480 520 ILMKACCTDYYRVKALMNEMRTV--GLSPNHI----SWTILIDACGGSGNVEGALQILKIMREDGMSPDVVAYTTAIKVC 593 (750)
Q Consensus 520 ~li~~~~~~~~~a~~l~~~m~~~--~~~p~~~----~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~ 593 (750)
..+.--.++.+.|..++++.+.. .-.+... ++.-+...-.+.|+.++|..+++++.+.. .+|..+...++.+|
T Consensus 424 v~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~n-~~d~~~l~~lV~a~ 502 (652)
T KOG2376|consen 424 VALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLEELVKFN-PNDTDLLVQLVTAY 502 (652)
T ss_pred HHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHhC-CchHHHHHHHHHHH
Confidence 44433344555555555555432 0011112 23333333456688888888888887743 55778888888888
Q ss_pred HHcCCHHHHHHHHHHH
Q 004480 594 VRSKRLKQAFSLFEEM 609 (750)
Q Consensus 594 ~~~g~~~~A~~~~~~m 609 (750)
++. ++++|..+-+.+
T Consensus 503 ~~~-d~eka~~l~k~L 517 (652)
T KOG2376|consen 503 ARL-DPEKAESLSKKL 517 (652)
T ss_pred Hhc-CHHHHHHHhhcC
Confidence 765 567777766654
No 73
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.04 E-value=7.2e-08 Score=89.82 Aligned_cols=223 Identities=12% Similarity=0.001 Sum_probs=161.2
Q ss_pred HHHHHhhhhcCchhHHHHHHHHHHhcCCCccccccchhhhhhHHHHHHhhccCcHHHHHHHHHHHHhCCCCCcccccHHH
Q 004480 117 ASGIVKSIREGRIDCVVGVLKKLNELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFR 196 (750)
Q Consensus 117 ~~~~~~~~~~g~~~~A~~~l~~~~~~~~~p~~~~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ 196 (750)
..+...|.+.|-+.+|...|+..++.-..| .+|-.+.++ |.+-.+++.|+.++.+-++ ..|.++.....
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q~~~~------dTfllLskv---Y~ridQP~~AL~~~~~gld--~fP~~VT~l~g 295 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQFPHP------DTFLLLSKV---YQRIDQPERALLVIGEGLD--SFPFDVTYLLG 295 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhcCCch------hHHHHHHHH---HHHhccHHHHHHHHhhhhh--cCCchhhhhhh
Confidence 567778999999999999999988764444 355555554 4447889999999998777 44888888888
Q ss_pred HHHHHHcCCChHHHHHHhhhC----CCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH
Q 004480 197 IVQLCVNKPDVNLAIRYACIV----PRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDY 272 (750)
Q Consensus 197 l~~~~~~~~~~~~A~~~~~~~----~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 272 (750)
..+.+...++.++|.++|+.+ |.+..+...+...|.-.++.+-|++.|.++.+.|+ .+...|+.+.-+|...+++
T Consensus 296 ~ARi~eam~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~-~speLf~NigLCC~yaqQ~ 374 (478)
T KOG1129|consen 296 QARIHEAMEQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGA-QSPELFCNIGLCCLYAQQI 374 (478)
T ss_pred hHHHHHHHHhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcC-CChHHHhhHHHHHHhhcch
Confidence 888888888888888887764 44456666677777778888888888888888877 4567777777778888888
Q ss_pred HHHHHHHHHHHhCCCCccH--HHHHHH--HHhhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHHcCChHHHHHHHH
Q 004480 273 MKSRAIYEDLRSQNVTLNI--YVFNSL--MNVNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYG 348 (750)
Q Consensus 273 ~~A~~~~~~m~~~g~~~~~--~~~~~l--l~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~ 348 (750)
+-++.-|......--.|+. ..|-.+ +.+-.||+..|.+.|+-....+ .-+...+|.|.-.-.+.|++++|..++.
T Consensus 375 D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d-~~h~ealnNLavL~~r~G~i~~Arsll~ 453 (478)
T KOG1129|consen 375 DLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSD-AQHGEALNNLAVLAARSGDILGARSLLN 453 (478)
T ss_pred hhhHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccC-cchHHHHHhHHHHHhhcCchHHHHHHHH
Confidence 8888888877654333332 222222 2234477777777777666543 3456677777777777788888887777
Q ss_pred HHHH
Q 004480 349 EVKH 352 (750)
Q Consensus 349 ~~~~ 352 (750)
....
T Consensus 454 ~A~s 457 (478)
T KOG1129|consen 454 AAKS 457 (478)
T ss_pred Hhhh
Confidence 7665
No 74
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.99 E-value=3.6e-05 Score=74.68 Aligned_cols=301 Identities=11% Similarity=0.064 Sum_probs=171.1
Q ss_pred chHHHHHHHHHhc--CCHHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCccHHHHHHHH
Q 004480 222 ILFCNFVREFGKK--RDLVSALRAYDASKKH-LSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLM 298 (750)
Q Consensus 222 ~~~~~l~~~~~~~--g~~~~A~~~~~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll 298 (750)
......+.+++.. ++...|...+-.+... -.+-|+.....+.+.+...|+.++|+..|++....+ |+..+
T Consensus 195 dwls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~d--py~i~----- 267 (564)
T KOG1174|consen 195 DWLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCAN--PDNVE----- 267 (564)
T ss_pred cHHHHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCC--hhhhh-----
Confidence 3333344444433 4444444444333322 244567788888888888888888888888766431 21111
Q ss_pred HhhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHHcCChHHHHHHHHHHHHhhhcCCCccCHHHHHHHHHHHHhccC
Q 004480 299 NVNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKW 378 (750)
Q Consensus 299 ~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~g~~~~~~~~~~~li~~~~~~g~ 378 (750)
......-.+.+.|+.+....+...+-.. ..-....|-.-...+...++
T Consensus 268 ---------------------------~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~-----~~~ta~~wfV~~~~l~~~K~ 315 (564)
T KOG1174|consen 268 ---------------------------AMDLYAVLLGQEGGCEQDSALMDYLFAK-----VKYTASHWFVHAQLLYDEKK 315 (564)
T ss_pred ---------------------------hHHHHHHHHHhccCHhhHHHHHHHHHhh-----hhcchhhhhhhhhhhhhhhh
Confidence 1111111223444554444444443321 11222233333334445566
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCChHHHHHHHHH
Q 004480 379 WQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRS 458 (750)
Q Consensus 379 ~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~ 458 (750)
++.|+.+-++.++.+. -+...|-.=...+...|++++|.-.|+...... +-+...|.-|+..|...|++.+|.-+-+.
T Consensus 316 ~~rAL~~~eK~I~~~~-r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~La-p~rL~~Y~GL~hsYLA~~~~kEA~~~An~ 393 (564)
T KOG1174|consen 316 FERALNFVEKCIDSEP-RNHEALILKGRLLIALERHTQAVIAFRTAQMLA-PYRLEIYRGLFHSYLAQKRFKEANALANW 393 (564)
T ss_pred HHHHHHHHHHHhccCc-ccchHHHhccHHHHhccchHHHHHHHHHHHhcc-hhhHHHHHHHHHHHHhhchHHHHHHHHHH
Confidence 6666666666655431 133444444455556666666666666665432 23556666666666666666666554433
Q ss_pred HhhcccccccCCCCCCchhhhhhhhhhhcccccCCCCccCCCccccccccCCCCccHHHHHHHH-HHHH---hcHHHHHH
Q 004480 459 WTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILM-KACC---TDYYRVKA 534 (750)
Q Consensus 459 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li-~~~~---~~~~~a~~ 534 (750)
....- +-+..+...+- ..|. .--++|..
T Consensus 394 ~~~~~------------------------------------------------~~sA~~LtL~g~~V~~~dp~~rEKAKk 425 (564)
T KOG1174|consen 394 TIRLF------------------------------------------------QNSARSLTLFGTLVLFPDPRMREKAKK 425 (564)
T ss_pred HHHHh------------------------------------------------hcchhhhhhhcceeeccCchhHHHHHH
Confidence 22110 11111111110 1111 12467777
Q ss_pred HHHHHHHcCCCCCH-HHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC
Q 004480 535 LMNEMRTVGLSPNH-ISWTILIDACGGSGNVEGALQILKIMREDGMSPDVVAYTTAIKVCVRSKRLKQAFSLFEEMKHYQ 613 (750)
Q Consensus 535 l~~~m~~~~~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 613 (750)
+++.-.+ +.|+- ...+.+...|...|..+.++.+++..... .||....+.|.+.+...+.+.+|.+.|....+
T Consensus 426 f~ek~L~--~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~--~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr-- 499 (564)
T KOG1174|consen 426 FAEKSLK--INPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLII--FPDVNLHNHLGDIMRAQNEPQKAMEYYYKALR-- 499 (564)
T ss_pred HHHhhhc--cCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhh--ccccHHHHHHHHHHHHhhhHHHHHHHHHHHHh--
Confidence 7777666 45654 35677788889999999999999998774 89999999999999999999999999998876
Q ss_pred CCCC
Q 004480 614 IQPN 617 (750)
Q Consensus 614 ~~p~ 617 (750)
+.|+
T Consensus 500 ~dP~ 503 (564)
T KOG1174|consen 500 QDPK 503 (564)
T ss_pred cCcc
Confidence 3453
No 75
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.99 E-value=1.9e-05 Score=74.87 Aligned_cols=447 Identities=12% Similarity=0.083 Sum_probs=233.4
Q ss_pred hhhcCchhHHHHHHHHHHhcCCCccccccchhhhhhHHHHHHhhccCcHHHHHHHHHHHHhCCCCCcccccHHHHHHHHH
Q 004480 123 SIREGRIDCVVGVLKKLNELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCV 202 (750)
Q Consensus 123 ~~~~g~~~~A~~~l~~~~~~~~~p~~~~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 202 (750)
+....++..|+.+++-....+-+- ......++..|. ...|++++|+..++-+....-.|. ..+-.+.-.+.
T Consensus 32 fls~rDytGAislLefk~~~~~EE-----E~~~~lWia~C~--fhLgdY~~Al~~Y~~~~~~~~~~~--el~vnLAcc~F 102 (557)
T KOG3785|consen 32 FLSNRDYTGAISLLEFKLNLDREE-----EDSLQLWIAHCY--FHLGDYEEALNVYTFLMNKDDAPA--ELGVNLACCKF 102 (557)
T ss_pred HHhcccchhHHHHHHHhhccchhh-----hHHHHHHHHHHH--HhhccHHHHHHHHHHHhccCCCCc--ccchhHHHHHH
Confidence 456788999999988776432221 123444554443 347999999999998877553333 33444444444
Q ss_pred cCCChHHHHHHhhhCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 004480 203 NKPDVNLAIRYACIVPRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDL 282 (750)
Q Consensus 203 ~~~~~~~A~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 282 (750)
-.|.+.+|..+....|+++.--..+...-.+.++-++-..+-..+... ..---++....-..-.+++|+++|...
T Consensus 103 yLg~Y~eA~~~~~ka~k~pL~~RLlfhlahklndEk~~~~fh~~LqD~-----~EdqLSLAsvhYmR~HYQeAIdvYkrv 177 (557)
T KOG3785|consen 103 YLGQYIEAKSIAEKAPKTPLCIRLLFHLAHKLNDEKRILTFHSSLQDT-----LEDQLSLASVHYMRMHYQEAIDVYKRV 177 (557)
T ss_pred HHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCcHHHHHHHHHHHhhh-----HHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 468889999988888887755555555556667766655555444331 112223333333344788888888888
Q ss_pred HhCCCCccHHHHHHHHHh---hcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHHcCChHHHHHHHHHHHHhhhcCCC
Q 004480 283 RSQNVTLNIYVFNSLMNV---NAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVL 359 (750)
Q Consensus 283 ~~~g~~~~~~~~~~ll~~---~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~g~~ 359 (750)
... .|+-...|.-+.. ...-++-+.++++-..+. ++.++...|.......+.=.-..|..-...+.. ++.
T Consensus 178 L~d--n~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q-~pdStiA~NLkacn~fRl~ngr~ae~E~k~lad---N~~- 250 (557)
T KOG3785|consen 178 LQD--NPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQ-FPDSTIAKNLKACNLFRLINGRTAEDEKKELAD---NID- 250 (557)
T ss_pred Hhc--ChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHh-CCCcHHHHHHHHHHHhhhhccchhHHHHHHHHh---ccc-
Confidence 765 3444444444442 223445556666555443 233344444444333333222222222222221 110
Q ss_pred ccCHHHHHHHHHHHHhc-----cCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH
Q 004480 360 KLDVFTYSTIVKVFADA-----KWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQ 434 (750)
Q Consensus 360 ~~~~~~~~~li~~~~~~-----g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~ 434 (750)
.. -..+.-+++. ..-+.|++++--+.+. .|. .--.|+-.|.+.+++.+|..+.+++.- ..|-..
T Consensus 251 --~~---~~f~~~l~rHNLVvFrngEgALqVLP~L~~~--IPE--ARlNL~iYyL~q~dVqeA~~L~Kdl~P--ttP~Ey 319 (557)
T KOG3785|consen 251 --QE---YPFIEYLCRHNLVVFRNGEGALQVLPSLMKH--IPE--ARLNLIIYYLNQNDVQEAISLCKDLDP--TTPYEY 319 (557)
T ss_pred --cc---chhHHHHHHcCeEEEeCCccHHHhchHHHhh--ChH--hhhhheeeecccccHHHHHHHHhhcCC--CChHHH
Confidence 00 1122222322 3446677777666543 333 234556667788888888887776631 122222
Q ss_pred HHHHHHHHHHHhCC-------hHHHHHHHHHHhhcccccccCCCCCCchhhhhhhhhhhcccccCCCCccCCCccccccc
Q 004480 435 CCNILLQACVEACQ-------FDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDK 507 (750)
Q Consensus 435 ~~~~ll~~~~~~g~-------~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 507 (750)
..-.++. ...|+ +.-|.+.|+-.-.
T Consensus 320 ilKgvv~--aalGQe~gSreHlKiAqqffqlVG~---------------------------------------------- 351 (557)
T KOG3785|consen 320 ILKGVVF--AALGQETGSREHLKIAQQFFQLVGE---------------------------------------------- 351 (557)
T ss_pred HHHHHHH--HHhhhhcCcHHHHHHHHHHHHHhcc----------------------------------------------
Confidence 2222222 22222 3333444332211
Q ss_pred cCCCCccHHHHHHHHHHH---HhcHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHH
Q 004480 508 RFSFKPTTTTYNILMKAC---CTDYYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQILKIMREDGMSPDVV 584 (750)
Q Consensus 508 ~~~~~p~~~~~~~li~~~---~~~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 584 (750)
.+..-|++.-.--+.+| ...+++....++.+..--...|...|| +..+++..|++.+|+++|-.+....++ |..
T Consensus 352 -Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~N-~AQAk~atgny~eaEelf~~is~~~ik-n~~ 428 (557)
T KOG3785|consen 352 -SALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTNDDDFNLN-LAQAKLATGNYVEAEELFIRISGPEIK-NKI 428 (557)
T ss_pred -cccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhH-HHHHHHHhcChHHHHHHHhhhcChhhh-hhH
Confidence 12233333322222222 245666666666666554444555554 567777788888888888777654444 555
Q ss_pred HHHHHH-HHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHH-HHHHHhcCCHHHHHHHHHHHHHHHHcCCCCCHHHHH
Q 004480 585 AYTTAI-KVCVRSKRLKQAFSLFEEMKHYQIQPNLVTYITL-LRARSRYGSLHEVQQCLAVYQDMWKAGYKANDTYLK 660 (750)
Q Consensus 585 ~~~~li-~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l-i~~~~~~g~~~~~~~a~~~~~~m~~~g~~p~~~~~~ 660 (750)
+|-+++ .+|.+.++++-|+.++-++. -..+..+.-.+ ..-|.+.+.+--+.+|+..++ .. .|++..|.
T Consensus 429 ~Y~s~LArCyi~nkkP~lAW~~~lk~~---t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE---~l--DP~pEnWe 498 (557)
T KOG3785|consen 429 LYKSMLARCYIRNKKPQLAWDMMLKTN---TPSERFSLLQLIANDCYKANEFYYAAKAFDELE---IL--DPTPENWE 498 (557)
T ss_pred HHHHHHHHHHHhcCCchHHHHHHHhcC---CchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHH---cc--CCCccccC
Confidence 665444 56777888888777666553 22233333333 344556665554444443333 22 45555544
No 76
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.94 E-value=1.9e-06 Score=81.18 Aligned_cols=328 Identities=13% Similarity=0.097 Sum_probs=213.2
Q ss_pred hhhHHHHHHHHhhcCChHHHHHHHHHHHHhcCChhhHHhhhhHHHHHHHHHhhhhcCchhHHHHHHHHHHhcCCCccccc
Q 004480 71 NDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLELF 150 (750)
Q Consensus 71 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~p~~~~ 150 (750)
..-...++..+..+|++.+|+.-|..+++. +|+.|.......+. |...|+-.-|+.=|++.++ +.||..
T Consensus 38 vekhlElGk~lla~~Q~sDALt~yHaAve~--dp~~Y~aifrRaT~------yLAmGksk~al~Dl~rVle--lKpDF~- 106 (504)
T KOG0624|consen 38 VEKHLELGKELLARGQLSDALTHYHAAVEG--DPNNYQAIFRRATV------YLAMGKSKAALQDLSRVLE--LKPDFM- 106 (504)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHcC--CchhHHHHHHHHHH------HhhhcCCccchhhHHHHHh--cCccHH-
Confidence 445567888999999999999999999988 89988877666665 8899999999999999997 677543
Q ss_pred cchhhhhhHHHHHHhhccCcHHHHHHHHHHHHhCCCCCcccccHHHHHHHHHcCCChHHHHHHhhhCCCCcchHHHHHHH
Q 004480 151 DGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRADILFCNFVRE 230 (750)
Q Consensus 151 ~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~l~~~ 230 (750)
.+-+.-...+.++|++++|..=|+.++... |.+.. ..+|..-...+.. ....-..+..
T Consensus 107 -----~ARiQRg~vllK~Gele~A~~DF~~vl~~~--~s~~~--------------~~eaqskl~~~~e-~~~l~~ql~s 164 (504)
T KOG0624|consen 107 -----AARIQRGVVLLKQGELEQAEADFDQVLQHE--PSNGL--------------VLEAQSKLALIQE-HWVLVQQLKS 164 (504)
T ss_pred -----HHHHHhchhhhhcccHHHHHHHHHHHHhcC--CCcch--------------hHHHHHHHHhHHH-HHHHHHHHHH
Confidence 333333334556999999999999998866 43211 1111111100000 1222334555
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCccHHHHHH-HHHhhcCChHHH
Q 004480 231 FGKKRDLVSALRAYDASKKHLSSP-NMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNS-LMNVNAHDLKFT 308 (750)
Q Consensus 231 ~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~-ll~~~~~~~~~a 308 (750)
+...|+...|+.....+++ +.| |...|..-..+|...|.+..|+.-++..-+..-..+...|.+ -+....|+.+.+
T Consensus 165 ~~~~GD~~~ai~~i~~llE--i~~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~s 242 (504)
T KOG0624|consen 165 ASGSGDCQNAIEMITHLLE--IQPWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAENS 242 (504)
T ss_pred HhcCCchhhHHHHHHHHHh--cCcchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHH
Confidence 6677999999999999888 445 666777888889999999998877776654321112222221 111122555555
Q ss_pred HHHHHHHHHcCCCCCHhhHHHHHHHHHHcCChHHHHHHHHHHHHhhhcCCCccCHHHHHHHHHHHHhccCHHHHHHHHHH
Q 004480 309 LEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKED 388 (750)
Q Consensus 309 ~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~g~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 388 (750)
+...++-.+. .||...+-. .| ..+.+..+.++.|.+ ..+.++|.+++...+.
T Consensus 243 L~~iRECLKl--dpdHK~Cf~---~Y---KklkKv~K~les~e~--------------------~ie~~~~t~cle~ge~ 294 (504)
T KOG0624|consen 243 LKEIRECLKL--DPDHKLCFP---FY---KKLKKVVKSLESAEQ--------------------AIEEKHWTECLEAGEK 294 (504)
T ss_pred HHHHHHHHcc--CcchhhHHH---HH---HHHHHHHHHHHHHHH--------------------HHhhhhHHHHHHHHHH
Confidence 5555555543 344322211 11 112222222333322 4456778888888888
Q ss_pred HHHCCCCCCHH---HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHHhCChHHHHHHHHHHhhcc
Q 004480 389 MLSAGVTPNTI---TWSSLINACANAGLVEQAMHLFEEMLQAGCEP-NSQCCNILLQACVEACQFDRAFRLFRSWTLSK 463 (750)
Q Consensus 389 m~~~g~~p~~~---~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~ 463 (750)
..+....-... .+..+-.++...|++.+|++.-.+.++. .| |+.++.--..+|.-...++.|..-|+...+.+
T Consensus 295 vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~--d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n 371 (504)
T KOG0624|consen 295 VLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDI--DPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELN 371 (504)
T ss_pred HHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhc--CchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcC
Confidence 87764332222 3455667778889999999999998875 45 47788888889998899999999998876543
No 77
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.91 E-value=3.7e-06 Score=87.22 Aligned_cols=206 Identities=12% Similarity=-0.034 Sum_probs=129.3
Q ss_pred CCcchhhhHHHHHHHHhhcCChHHHHHHHHHHHHhcC-ChhhHHhhhhHHHHHHHHHhhhhcCchhHHHHHHHHHHhcCC
Q 004480 66 DLSSRNDYYADMASKLAKDGRLEEFAMIVESVVVSEG-NVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGV 144 (750)
Q Consensus 66 ~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~ 144 (750)
+|+. ...|..++..+...|+.+++...+........ +++....... ....+...|++++|.+.++++++.
T Consensus 2 dp~~-~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~------~a~~~~~~g~~~~A~~~~~~~l~~-- 72 (355)
T cd05804 2 DPDF-ALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHV------EALSAWIAGDLPKALALLEQLLDD-- 72 (355)
T ss_pred CCcc-HHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHH------HHHHHHHcCCHHHHHHHHHHHHHH--
Confidence 5677 67777788888888999998888877766632 2221111111 122356889999999999999874
Q ss_pred CccccccchhhhhhHHHHHHhhccCcHHHHHHHHHHHHhCCCCCcccccHHHHHHHHHcCCChHHHHHHhhh----CCCC
Q 004480 145 APLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACI----VPRA 220 (750)
Q Consensus 145 ~p~~~~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~----~~~~ 220 (750)
.|+.. ..+.............+....+.+.++. .....|........++..+...|++++|...++. .|.+
T Consensus 73 ~P~~~---~a~~~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~ 147 (355)
T cd05804 73 YPRDL---LALKLHLGAFGLGDFSGMRDHVARVLPL--WAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELNPDD 147 (355)
T ss_pred CCCcH---HHHHHhHHHHHhcccccCchhHHHHHhc--cCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence 45432 1111000000011113555555555554 1122244444444556677888888888887766 3666
Q ss_pred cchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-CCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 004480 221 DILFCNFVREFGKKRDLVSALRAYDASKKHLSS-PNM--YICRTIIDVCGICGDYMKSRAIYEDLRSQ 285 (750)
Q Consensus 221 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~--~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 285 (750)
...+..+...|...|++++|...+++....... ++. ..|..+...+...|++++|..+|++....
T Consensus 148 ~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~ 215 (355)
T cd05804 148 AWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAP 215 (355)
T ss_pred cHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhcc
Confidence 677778888888888888888888887764321 222 24556777788888888888888887543
No 78
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=98.90 E-value=8.7e-06 Score=85.79 Aligned_cols=65 Identities=15% Similarity=0.191 Sum_probs=45.8
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCccHHHHH
Q 004480 228 VREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFN 295 (750)
Q Consensus 228 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~ 295 (750)
...+...|++++|++.++.-... +.............+.+.|+.++|..+|..+++++ |+...|.
T Consensus 11 ~~il~e~g~~~~AL~~L~~~~~~-I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN--Pdn~~Yy 75 (517)
T PF12569_consen 11 NSILEEAGDYEEALEHLEKNEKQ-ILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRN--PDNYDYY 75 (517)
T ss_pred HHHHHHCCCHHHHHHHHHhhhhh-CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCcHHHH
Confidence 34566778999999888775542 32334566677778888899999999999988874 4444433
No 79
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.87 E-value=3.3e-06 Score=81.65 Aligned_cols=288 Identities=11% Similarity=-0.020 Sum_probs=169.9
Q ss_pred HHHHhhcCChHHHHHHHHHHHHhcCChhhHHhhhhHHHHHHHHHhhhhcCchhHHHHHHHHHHhcCCCccccccchhhhh
Q 004480 78 ASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLELFDGSGFKL 157 (750)
Q Consensus 78 ~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~p~~~~~~~~~~~ 157 (750)
+.+.+-.|+-..|...+-.+.....-|..... +..+...+...|+.++|+..|++... +.|...+.-..|..
T Consensus 203 a~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhL------l~~lak~~~~~Gdn~~a~~~Fe~~~~--~dpy~i~~MD~Ya~ 274 (564)
T KOG1174|consen 203 ALAQMFNFKHSDASQTFLMLHDNTTLRCNEHL------MMALGKCLYYNGDYFQAEDIFSSTLC--ANPDNVEAMDLYAV 274 (564)
T ss_pred HHHHHHhcccchhhhHHHHHHhhccCCccHHH------HHHHhhhhhhhcCchHHHHHHHHHhh--CChhhhhhHHHHHH
Confidence 33444445555555555555444444443333 33344447777888888888877775 56655544444444
Q ss_pred hHHHHHHhhccCcHHHHHHHHHHHHhCCCCCcccccHHHHHHHHHcCCChHHHHHHhhhC----CCCcchHHHHHHHHHh
Q 004480 158 LKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIV----PRADILFCNFVREFGK 233 (750)
Q Consensus 158 l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~----~~~~~~~~~l~~~~~~ 233 (750)
++. ..|++++--.+...+.... ......|..-+..+-...+++.|+.+.++. +++...+-.-...+..
T Consensus 275 LL~------~eg~~e~~~~L~~~Lf~~~--~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~ 346 (564)
T KOG1174|consen 275 LLG------QEGGCEQDSALMDYLFAKV--KYTASHWFVHAQLLYDEKKFERALNFVEKCIDSEPRNHEALILKGRLLIA 346 (564)
T ss_pred HHH------hccCHhhHHHHHHHHHhhh--hcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccCcccchHHHhccHHHHh
Confidence 432 3677777666666655422 112223444444444566777777666553 3444555555677778
Q ss_pred cCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCccHHHHHHHH-Hhhc---CChHHH
Q 004480 234 KRDLVSALRAYDASKKHLSSP-NMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLM-NVNA---HDLKFT 308 (750)
Q Consensus 234 ~g~~~~A~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll-~~~~---~~~~~a 308 (750)
.++.++|.-.|..... ..| +...|.-|+..|...|++.+|..+-+..... ++.+..+...+- .++. ..-++|
T Consensus 347 ~~R~~~A~IaFR~Aq~--Lap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKA 423 (564)
T KOG1174|consen 347 LERHTQAVIAFRTAQM--LAPYRLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKA 423 (564)
T ss_pred ccchHHHHHHHHHHHh--cchhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHH
Confidence 8889999888888776 333 6788999999999999998888776655432 122333333221 1222 133556
Q ss_pred HHHHHHHHHcCCCCC-HhhHHHHHHHHHHcCChHHHHHHHHHHHHhhhcCCCccCHHHHHHHHHHHHhccCHHHHHHHHH
Q 004480 309 LEVYKNMQKLGVMAD-MASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKE 387 (750)
Q Consensus 309 ~~~~~~m~~~g~~~~-~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~g~~~~~~~~~~~li~~~~~~g~~~~a~~~~~ 387 (750)
..+++.-.+. .|+ ....+.+...+...|..+++..+++.... ..||....+.|...+...+.+.+|++.|.
T Consensus 424 Kkf~ek~L~~--~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~------~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~ 495 (564)
T KOG1174|consen 424 KKFAEKSLKI--NPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLI------IFPDVNLHNHLGDIMRAQNEPQKAMEYYY 495 (564)
T ss_pred HHHHHhhhcc--CCccHHHHHHHHHHHHhhCccchHHHHHHHHHh------hccccHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 6666555443 333 23444555566666777777777776655 45677777777777777777777777776
Q ss_pred HHHHC
Q 004480 388 DMLSA 392 (750)
Q Consensus 388 ~m~~~ 392 (750)
..+..
T Consensus 496 ~ALr~ 500 (564)
T KOG1174|consen 496 KALRQ 500 (564)
T ss_pred HHHhc
Confidence 66654
No 80
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=98.86 E-value=4.3e-06 Score=88.09 Aligned_cols=284 Identities=14% Similarity=0.087 Sum_probs=196.1
Q ss_pred hhccCcHHHHHHHHHHHHhCCCCCcccccHHHHHHHHHcCCChHHHHHHhhhC----CCCcchHHHHHHHHHhcC-----
Q 004480 165 LLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIV----PRADILFCNFVREFGKKR----- 235 (750)
Q Consensus 165 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~----~~~~~~~~~l~~~~~~~g----- 235 (750)
+...|++++|++.++.-.. .-++........+..+.+.|+.++|...+..+ |++...|..+..+.+-..
T Consensus 14 l~e~g~~~~AL~~L~~~~~--~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPdn~~Yy~~L~~~~g~~~~~~~~ 91 (517)
T PF12569_consen 14 LEEAGDYEEALEHLEKNEK--QILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPDNYDYYRGLEEALGLQLQLSDE 91 (517)
T ss_pred HHHCCCHHHHHHHHHhhhh--hCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHhhhcccccc
Confidence 3458999999999987554 33666677778899999999999999987664 666666666777763333
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH-HHHHHHHHHHHhCCCCccHHHHHHHHHhhc--CChHHHHHHH
Q 004480 236 DLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDY-MKSRAIYEDLRSQNVTLNIYVFNSLMNVNA--HDLKFTLEVY 312 (750)
Q Consensus 236 ~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~-~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~--~~~~~a~~~~ 312 (750)
+.+....+|+++...- |...+...+.-.+.....+ ..+...+..+...|+++- |+.+-..+. ....-..+++
T Consensus 92 ~~~~~~~~y~~l~~~y--p~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPsl---F~~lk~Ly~d~~K~~~i~~l~ 166 (517)
T PF12569_consen 92 DVEKLLELYDELAEKY--PRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPSL---FSNLKPLYKDPEKAAIIESLV 166 (517)
T ss_pred cHHHHHHHHHHHHHhC--ccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCchH---HHHHHHHHcChhHHHHHHHHH
Confidence 5677888899887643 3322222222112222233 344556666777786543 333333333 2223334444
Q ss_pred HHHHHc----C----------CCCCHh--hHHHHHHHHHHcCChHHHHHHHHHHHHhhhcCCCccC-HHHHHHHHHHHHh
Q 004480 313 KNMQKL----G----------VMADMA--SYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLD-VFTYSTIVKVFAD 375 (750)
Q Consensus 313 ~~m~~~----g----------~~~~~~--~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~g~~~~~-~~~~~~li~~~~~ 375 (750)
...... + -+|... ++.-+...|...|++++|++..+.... ..|+ +..|..-.+.|-+
T Consensus 167 ~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~------htPt~~ely~~KarilKh 240 (517)
T PF12569_consen 167 EEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIE------HTPTLVELYMTKARILKH 240 (517)
T ss_pred HHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHh------cCCCcHHHHHHHHHHHHH
Confidence 444321 1 123332 345556778899999999999999887 4566 5678888999999
Q ss_pred ccCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH------HH--HHHHHHHHHhC
Q 004480 376 AKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQ------CC--NILLQACVEAC 447 (750)
Q Consensus 376 ~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~------~~--~~ll~~~~~~g 447 (750)
.|++++|.+.++.....+.. |...=+-....+.+.|++++|.+++......+..|-.. .| .-...+|.+.|
T Consensus 241 ~G~~~~Aa~~~~~Ar~LD~~-DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~ 319 (517)
T PF12569_consen 241 AGDLKEAAEAMDEARELDLA-DRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQG 319 (517)
T ss_pred CCCHHHHHHHHHHHHhCChh-hHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999988654 88888888999999999999999999998766443221 22 33456889999
Q ss_pred ChHHHHHHHHHHhhc
Q 004480 448 QFDRAFRLFRSWTLS 462 (750)
Q Consensus 448 ~~~~A~~~~~~~~~~ 462 (750)
++..|++.|..+.+.
T Consensus 320 ~~~~ALk~~~~v~k~ 334 (517)
T PF12569_consen 320 DYGLALKRFHAVLKH 334 (517)
T ss_pred hHHHHHHHHHHHHHH
Confidence 999999988877653
No 81
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.85 E-value=5.3e-05 Score=81.65 Aligned_cols=210 Identities=14% Similarity=0.098 Sum_probs=111.2
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCChHHHHHHHHHH
Q 004480 380 QMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSW 459 (750)
Q Consensus 380 ~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~ 459 (750)
..|...+.+.++.. .-+..+|+.|.-. ...|++.-+...|-+-.... +....+|..+--.+.++.+++-|...|...
T Consensus 800 ~~Ai~c~KkaV~L~-ann~~~WnaLGVl-sg~gnva~aQHCfIks~~se-p~~~~~W~NlgvL~l~n~d~E~A~~af~~~ 876 (1238)
T KOG1127|consen 800 CTAIRCCKKAVSLC-ANNEGLWNALGVL-SGIGNVACAQHCFIKSRFSE-PTCHCQWLNLGVLVLENQDFEHAEPAFSSV 876 (1238)
T ss_pred HHHHHHHHHHHHHh-hccHHHHHHHHHh-hccchhhhhhhhhhhhhhcc-ccchhheeccceeEEecccHHHhhHHHHhh
Confidence 45777777766542 3356677766554 55577777777776655442 445667777777788888888888888776
Q ss_pred hhcccccccCCCCCCchhhhhhhhhhhcccccCCCCccCCCccccccccCCCCccHHHHHHH--HHHHHhcHHHHHHHHH
Q 004480 460 TLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNIL--MKACCTDYYRVKALMN 537 (750)
Q Consensus 460 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l--i~~~~~~~~~a~~l~~ 537 (750)
.... +-|...|-.. +.--.++.-+...+|.
T Consensus 877 qSLd------------------------------------------------P~nl~~WlG~Ali~eavG~ii~~~~lfa 908 (1238)
T KOG1127|consen 877 QSLD------------------------------------------------PLNLVQWLGEALIPEAVGRIIERLILFA 908 (1238)
T ss_pred hhcC------------------------------------------------chhhHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 5321 1122222111 1101122334444443
Q ss_pred HHH----HcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHH----------HHHHCCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 004480 538 EMR----TVGLSPNHISWTILIDACGGSGNVEGALQILK----------IMREDGMSPDVVAYTTAIKVCVRSKRLKQAF 603 (750)
Q Consensus 538 ~m~----~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~----------~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~ 603 (750)
.-- ..|--|+..-|-....-...+|+.++-+...+ +... |.+-+.+.|.+.....-+.+....|.
T Consensus 909 Hs~el~~~~gka~~f~Yw~c~te~h~~Ng~~e~~I~t~~ki~sAs~al~~yf~-~~p~~~fAy~~~gstlEhL~ey~~a~ 987 (1238)
T KOG1127|consen 909 HSDELCSKEGKAKKFQYWLCATEIHLQNGNIEESINTARKISSASLALSYYFL-GHPQLCFAYAANGSTLEHLEEYRAAL 987 (1238)
T ss_pred hhHHhhccccccchhhHHHHHHHHHHhccchHHHHHHhhhhhhhHHHHHHHHh-cCcchhHHHHHHHhHHHHHHHHHHHH
Confidence 311 11223444434333333445555444333332 2222 23335677877777777778777777
Q ss_pred HHHHHHHHC-CCCCCHHHHHHHH----HHHHhcCCHHHHHHHH
Q 004480 604 SLFEEMKHY-QIQPNLVTYITLL----RARSRYGSLHEVQQCL 641 (750)
Q Consensus 604 ~~~~~m~~~-g~~p~~~t~~~li----~~~~~~g~~~~~~~a~ 641 (750)
++..+.... ..+-|..+|+.+. +.++..|.++.+..+.
T Consensus 988 ela~RliglLe~k~d~sqynvak~~~gRL~lslgefe~A~~a~ 1030 (1238)
T KOG1127|consen 988 ELATRLIGLLELKLDESQYNVAKPDAGRLELSLGEFESAKKAS 1030 (1238)
T ss_pred HHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhhcchhhHhhhh
Confidence 777765410 1234555555433 3334456666554443
No 82
>PRK11189 lipoprotein NlpI; Provisional
Probab=98.85 E-value=1.1e-06 Score=87.54 Aligned_cols=64 Identities=9% Similarity=-0.042 Sum_probs=30.7
Q ss_pred cchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 004480 221 DILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQ 285 (750)
Q Consensus 221 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 285 (750)
..+|+.+...+...|++++|...|+...+..+ -+..+|..+..++...|++++|.+.|+...+.
T Consensus 98 ~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P-~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~ 161 (296)
T PRK11189 98 ADAYNYLGIYLTQAGNFDAAYEAFDSVLELDP-TYNYAYLNRGIALYYGGRYELAQDDLLAFYQD 161 (296)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 34455555555555555555555555544211 12334444444455555555555555555443
No 83
>PRK11189 lipoprotein NlpI; Provisional
Probab=98.85 E-value=1.8e-06 Score=85.93 Aligned_cols=203 Identities=10% Similarity=-0.035 Sum_probs=137.3
Q ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCccHHHHHHHHH--
Q 004480 222 ILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMN-- 299 (750)
Q Consensus 222 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~-- 299 (750)
..|..+...|.+.|++++|...|++..+..+ .+...|+.+...+...|++++|...|+...+.... +...|..+-.
T Consensus 65 ~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P-~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~-~~~a~~~lg~~l 142 (296)
T PRK11189 65 QLHYERGVLYDSLGLRALARNDFSQALALRP-DMADAYNYLGIYLTQAGNFDAAYEAFDSVLELDPT-YNYAYLNRGIAL 142 (296)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHH
Confidence 4577788889999999999999999988543 35789999999999999999999999999876422 2334433333
Q ss_pred hhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHHcCChHHHHHHHHHHHHhhhcCCCccCHHHHHHHHHHHHhccCH
Q 004480 300 VNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWW 379 (750)
Q Consensus 300 ~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~g~~~~~~~~~~~li~~~~~~g~~ 379 (750)
...|++++|.+.|+...+.. |+..........+...++.++|...|.+.... ..++...+ .+. ....|+.
T Consensus 143 ~~~g~~~eA~~~~~~al~~~--P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~-----~~~~~~~~-~~~--~~~lg~~ 212 (296)
T PRK11189 143 YYGGRYELAQDDLLAFYQDD--PNDPYRALWLYLAESKLDPKQAKENLKQRYEK-----LDKEQWGW-NIV--EFYLGKI 212 (296)
T ss_pred HHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHccCCHHHHHHHHHHHHhh-----CCccccHH-HHH--HHHccCC
Confidence 35589999999999988753 44332223333344567899999999765431 22332222 222 2334555
Q ss_pred HHHHHHHHHHHHC---CC--C-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHH
Q 004480 380 QMALKVKEDMLSA---GV--T-PNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNI 438 (750)
Q Consensus 380 ~~a~~~~~~m~~~---g~--~-p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ 438 (750)
.++ +.+..+.+. .+ . .....|..+...+.+.|++++|...|++..+.. +||..-+..
T Consensus 213 ~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~-~~~~~e~~~ 275 (296)
T PRK11189 213 SEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANN-VYNFVEHRY 275 (296)
T ss_pred CHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CchHHHHHH
Confidence 443 344444421 11 1 124578889999999999999999999998765 345544444
No 84
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.84 E-value=4.6e-07 Score=84.60 Aligned_cols=108 Identities=10% Similarity=0.006 Sum_probs=51.5
Q ss_pred hcHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHHcCCHHHHHH
Q 004480 527 TDYYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQILKIMREDGMSPD--VVAYTTAIKVCVRSKRLKQAFS 604 (750)
Q Consensus 527 ~~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~~~~~li~~~~~~g~~~~A~~ 604 (750)
++.+-|...++++...|+. +...|+.+.-+|...+++|-++.-|.+....--.|+ ...|-.+-......|++.-|.+
T Consensus 338 ~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~r 416 (478)
T KOG1129|consen 338 NNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKR 416 (478)
T ss_pred CChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhhHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHH
Confidence 3444455555555554443 444455555555555555555555555544322232 2344444444445555555555
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 004480 605 LFEEMKHYQIQPNLVTYITLLRARSRYGSLHE 636 (750)
Q Consensus 605 ~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~ 636 (750)
.|+-....+ .-....+|.|.-.-.+.|++++
T Consensus 417 cfrlaL~~d-~~h~ealnNLavL~~r~G~i~~ 447 (478)
T KOG1129|consen 417 CFRLALTSD-AQHGEALNNLAVLAARSGDILG 447 (478)
T ss_pred HHHHHhccC-cchHHHHHhHHHHHhhcCchHH
Confidence 555554321 1134445555555555555444
No 85
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.82 E-value=6.9e-05 Score=77.79 Aligned_cols=297 Identities=15% Similarity=0.117 Sum_probs=167.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCccHHHHHHHHHhhcC
Q 004480 224 FCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAH 303 (750)
Q Consensus 224 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~ 303 (750)
-.+.|+.|.+.|....|.+.-..=.. ...|......+..++.+..-+++|-.+|+++..
T Consensus 618 ~laaiqlyika~~p~~a~~~a~n~~~--l~~de~il~~ia~alik~elydkagdlfeki~d------------------- 676 (1636)
T KOG3616|consen 618 GLAAIQLYIKAGKPAKAARAALNDEE--LLADEEILEHIAAALIKGELYDKAGDLFEKIHD------------------- 676 (1636)
T ss_pred cHHHHHHHHHcCCchHHHHhhcCHHH--hhccHHHHHHHHHHHHhhHHHHhhhhHHHHhhC-------------------
Confidence 34556778888887777654322111 224556666666666666666777667766542
Q ss_pred ChHHHHHHHHHH---------HHcCCCCCHhhH-HHHHHHHHHcCChHHHHHHHHHHHHhhhcCCCccCHHHHHHHHHHH
Q 004480 304 DLKFTLEVYKNM---------QKLGVMADMASY-NILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVF 373 (750)
Q Consensus 304 ~~~~a~~~~~~m---------~~~g~~~~~~~~-~~ll~~~~~~g~~~~A~~~~~~~~~~~~~g~~~~~~~~~~~li~~~ 373 (750)
+++|++.|+.- .+..++..+++. .....-+...|+++.|..-|-+... .-..+.+.
T Consensus 677 -~dkale~fkkgdaf~kaielarfafp~evv~lee~wg~hl~~~~q~daainhfiea~~-------------~~kaieaa 742 (1636)
T KOG3616|consen 677 -FDKALECFKKGDAFGKAIELARFAFPEEVVKLEEAWGDHLEQIGQLDAAINHFIEANC-------------LIKAIEAA 742 (1636)
T ss_pred -HHHHHHHHHcccHHHHHHHHHHhhCcHHHhhHHHHHhHHHHHHHhHHHHHHHHHHhhh-------------HHHHHHHH
Confidence 22233322211 001111112111 1223344455666666655544332 12234455
Q ss_pred HhccCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCChHHHH
Q 004480 374 ADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAF 453 (750)
Q Consensus 374 ~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~ 453 (750)
.....|..|+.+++.+..... -..-|..+.+-|+..|+++.|.++|-+.- .++-.|.+|.+.|+|+.|.
T Consensus 743 i~akew~kai~ildniqdqk~--~s~yy~~iadhyan~~dfe~ae~lf~e~~---------~~~dai~my~k~~kw~da~ 811 (1636)
T KOG3616|consen 743 IGAKEWKKAISILDNIQDQKT--ASGYYGEIADHYANKGDFEIAEELFTEAD---------LFKDAIDMYGKAGKWEDAF 811 (1636)
T ss_pred hhhhhhhhhHhHHHHhhhhcc--ccccchHHHHHhccchhHHHHHHHHHhcc---------hhHHHHHHHhccccHHHHH
Confidence 677788888888888876532 23446777788888899998888887652 3566788888999999888
Q ss_pred HHHHHHhhcccccccCCCCCCchhhhhhhhhhhcccccCCCCccCCCccccccccCCCCccHHHHHHHHHHHH--hcHHH
Q 004480 454 RLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACC--TDYYR 531 (750)
Q Consensus 454 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~--~~~~~ 531 (750)
++-.+.... ......|-+-..-+- +.+.+
T Consensus 812 kla~e~~~~-------------------------------------------------e~t~~~yiakaedldehgkf~e 842 (1636)
T KOG3616|consen 812 KLAEECHGP-------------------------------------------------EATISLYIAKAEDLDEHGKFAE 842 (1636)
T ss_pred HHHHHhcCc-------------------------------------------------hhHHHHHHHhHHhHHhhcchhh
Confidence 877654311 112222211111111 13345
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 004480 532 VKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQILKIMREDGMSPDVVAYTTAIKVCVRSKRLKQAFSLFEEMKH 611 (750)
Q Consensus 532 a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 611 (750)
|++++-.+.. |+. .|.+|-+.|..+..+++.++-.-.. -..|.-.+..-|-..|++.+|.+-|-+..+
T Consensus 843 aeqlyiti~~----p~~-----aiqmydk~~~~ddmirlv~k~h~d~---l~dt~~~f~~e~e~~g~lkaae~~flea~d 910 (1636)
T KOG3616|consen 843 AEQLYITIGE----PDK-----AIQMYDKHGLDDDMIRLVEKHHGDH---LHDTHKHFAKELEAEGDLKAAEEHFLEAGD 910 (1636)
T ss_pred hhheeEEccC----chH-----HHHHHHhhCcchHHHHHHHHhChhh---hhHHHHHHHHHHHhccChhHHHHHHHhhhh
Confidence 5555433322 433 3667888888888877776653211 134556666777778888888877766543
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHH
Q 004480 612 YQIQPNLVTYITLLRARSRYGSLHE 636 (750)
Q Consensus 612 ~g~~p~~~t~~~li~~~~~~g~~~~ 636 (750)
|.+-++.|-.++-+++
T Consensus 911 ---------~kaavnmyk~s~lw~d 926 (1636)
T KOG3616|consen 911 ---------FKAAVNMYKASELWED 926 (1636)
T ss_pred ---------HHHHHHHhhhhhhHHH
Confidence 4445555555555554
No 86
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.82 E-value=2.9e-06 Score=78.30 Aligned_cols=349 Identities=12% Similarity=0.066 Sum_probs=216.4
Q ss_pred HHHHHHHHhhcCChHHHHHHHHHHHHhcCChhhHHhhhhHHHHHHHHHhhhhcCchhHHHHHHHHHHhcCCCccccccch
Q 004480 74 YADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLELFDGS 153 (750)
Q Consensus 74 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~p~~~~~~~ 153 (750)
+.+.+..+++..++++|++++..-.+. .|.+ ...++.+...|-+..++..|-++|+++-. ..|...
T Consensus 13 ftaviy~lI~d~ry~DaI~~l~s~~Er--~p~~------rAgLSlLgyCYY~~Q~f~~AA~CYeQL~q--l~P~~~---- 78 (459)
T KOG4340|consen 13 FTAVVYRLIRDARYADAIQLLGSELER--SPRS------RAGLSLLGYCYYRLQEFALAAECYEQLGQ--LHPELE---- 78 (459)
T ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHhc--Cccc------hHHHHHHHHHHHHHHHHHHHHHHHHHHHh--hChHHH----
Confidence 456667788999999999999998887 4532 23334555558899999999999999987 455332
Q ss_pred hhhhhHHHHHHhhccCcHHHHHHHHHHHHhCCCCCcccccHHHH----HHHHHcCCChHHHHHHhhhCCC--CcchHHHH
Q 004480 154 GFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRI----VQLCVNKPDVNLAIRYACIVPR--ADILFCNF 227 (750)
Q Consensus 154 ~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l----~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~l 227 (750)
-+..+ -+..+.+.+.+.+|+.+...|.+.. ...... ....-..+++..+..+.+..|. +..+.+..
T Consensus 79 qYrlY--~AQSLY~A~i~ADALrV~~~~~D~~------~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en~Ad~~in~ 150 (459)
T KOG4340|consen 79 QYRLY--QAQSLYKACIYADALRVAFLLLDNP------ALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSENEADGQINL 150 (459)
T ss_pred HHHHH--HHHHHHHhcccHHHHHHHHHhcCCH------HHHHHHHHHHHHHhcccccCcchHHHHHhccCCCccchhccc
Confidence 22222 1223444789999999988776521 112222 2223357788888888888884 34566677
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCccHH----HHHHHHHhhcC
Q 004480 228 VREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIY----VFNSLMNVNAH 303 (750)
Q Consensus 228 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~----~~~~ll~~~~~ 303 (750)
.-..-+.|+++.|++-|+...+-+.-....+||.-+..| +.|+++.|++...+++++|++.... .-.-.+.+.
T Consensus 151 gCllykegqyEaAvqkFqaAlqvsGyqpllAYniALaHy-~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvr-- 227 (459)
T KOG4340|consen 151 GCLLYKEGQYEAAVQKFQAALQVSGYQPLLAYNLALAHY-SSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVR-- 227 (459)
T ss_pred hheeeccccHHHHHHHHHHHHhhcCCCchhHHHHHHHHH-hhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchh--
Confidence 777789999999999999988765445577888877654 6789999999999999988652211 000111100
Q ss_pred ChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHHcCChHHHHHHHHHHHHhhhcCCCccCHHHHHHHHHHHHhccCHHHHH
Q 004480 304 DLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMAL 383 (750)
Q Consensus 304 ~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~g~~~~~~~~~~~li~~~~~~g~~~~a~ 383 (750)
.+.....+... .=...+|.-...+.+.|+++.|.+.+-.|+-. .....|++|...+.-. --.+++.+..
T Consensus 228 svgNt~~lh~S-------al~eAfNLKaAIeyq~~n~eAA~eaLtDmPPR---aE~elDPvTLHN~Al~-n~~~~p~~g~ 296 (459)
T KOG4340|consen 228 SVGNTLVLHQS-------ALVEAFNLKAAIEYQLRNYEAAQEALTDMPPR---AEEELDPVTLHNQALM-NMDARPTEGF 296 (459)
T ss_pred cccchHHHHHH-------HHHHHhhhhhhhhhhcccHHHHHHHhhcCCCc---ccccCCchhhhHHHHh-cccCCccccH
Confidence 00000111000 01223444445566788888888888777642 2234567776554422 1234455555
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHH-hCChHHHHHHHHHHh
Q 004480 384 KVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCE-PNSQCCNILLQACVE-ACQFDRAFRLFRSWT 460 (750)
Q Consensus 384 ~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~-p~~~~~~~ll~~~~~-~g~~~~A~~~~~~~~ 460 (750)
+-+..++...+ -...||..++-.||+..-++.|-.++.+-...-.+ .+...|+ +++++.- .-..++|++-+..+.
T Consensus 297 ~KLqFLL~~nP-fP~ETFANlLllyCKNeyf~lAADvLAEn~~lTyk~L~~Yly~-LLdaLIt~qT~pEea~KKL~~La 373 (459)
T KOG4340|consen 297 EKLQFLLQQNP-FPPETFANLLLLYCKNEYFDLAADVLAENAHLTYKFLTPYLYD-LLDALITCQTAPEEAFKKLDGLA 373 (459)
T ss_pred HHHHHHHhcCC-CChHHHHHHHHHHhhhHHHhHHHHHHhhCcchhHHHhhHHHHH-HHHHHHhCCCCHHHHHHHHHHHH
Confidence 55666665543 34678888999999999898888887664322111 2333343 3333332 345566665555443
No 87
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.80 E-value=0.00025 Score=74.92 Aligned_cols=507 Identities=11% Similarity=0.086 Sum_probs=253.7
Q ss_pred HHhhcCChHHHHHHHHHHHHhcCChhhHHhhhhHHHHHHHHHhhhhcCchhHHHHHHHHHHhcCCCccccccchhhhhhH
Q 004480 80 KLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLELFDGSGFKLLK 159 (750)
Q Consensus 80 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~p~~~~~~~~~~~l~ 159 (750)
..++.|.+++|+.+|.+..+. + . +.- .|..+|.+++|.++-+.--+..++. ++--+.
T Consensus 809 LAieLgMlEeA~~lYr~ckR~--D-----L---lNK------lyQs~g~w~eA~eiAE~~DRiHLr~-------Tyy~yA 865 (1416)
T KOG3617|consen 809 LAIELGMLEEALILYRQCKRY--D-----L---LNK------LYQSQGMWSEAFEIAETKDRIHLRN-------TYYNYA 865 (1416)
T ss_pred HHHHHhhHHHHHHHHHHHHHH--H-----H---HHH------HHHhcccHHHHHHHHhhccceehhh-------hHHHHH
Confidence 334567777777777776544 1 1 222 2678899999888866443322221 222222
Q ss_pred HHHHHhhccCcHHHHHHHHHHHHh----------CCC--------CCcccccHHHHHHHHHcCCChHHHHHHhhhCCCCc
Q 004480 160 NECQRLLDSGEVEMFVGLMEVLEE----------FRL--------PVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRAD 221 (750)
Q Consensus 160 ~~~~~~~~~g~~~~A~~~~~~~~~----------~~~--------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 221 (750)
+ .+-..++.+.|+++|++.-. ... ...+...|.--++.+...|+.+.|+.+|...
T Consensus 866 ~---~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A---- 938 (1416)
T KOG3617|consen 866 K---YLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSA---- 938 (1416)
T ss_pred H---HHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHh----
Confidence 2 33347888999988875321 110 0123344555566677788888888887665
Q ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC--------CCccHHH
Q 004480 222 ILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQN--------VTLNIYV 293 (750)
Q Consensus 222 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g--------~~~~~~~ 293 (750)
.-|.++++..|-.|+.++|-++-++- -|..++-.+.+.|...|++.+|...|.+..... -..+...
T Consensus 939 ~D~fs~VrI~C~qGk~~kAa~iA~es------gd~AAcYhlaR~YEn~g~v~~Av~FfTrAqafsnAIRlcKEnd~~d~L 1012 (1416)
T KOG3617|consen 939 KDYFSMVRIKCIQGKTDKAARIAEES------GDKAACYHLARMYENDGDVVKAVKFFTRAQAFSNAIRLCKENDMKDRL 1012 (1416)
T ss_pred hhhhhheeeEeeccCchHHHHHHHhc------ccHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHH
Confidence 34777777777788888887766542 456677778888999999999998887653210 0122333
Q ss_pred HHHHHHhhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHHcCChHHHHHHHHHHHH------hhhcCCCccCHHHHH
Q 004480 294 FNSLMNVNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKH------LEAKGVLKLDVFTYS 367 (750)
Q Consensus 294 ~~~ll~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~------~~~~g~~~~~~~~~~ 367 (750)
+|..+..-..+.-.|-+.|++.-- . +..-+-.|-+.|.+.+|+++--+-.+ ..++-....|+...+
T Consensus 1013 ~nlal~s~~~d~v~aArYyEe~g~---~-----~~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~DLd~~sDp~ll~ 1084 (1416)
T KOG3617|consen 1013 ANLALMSGGSDLVSAARYYEELGG---Y-----AHKAVMLYHKAGMIGKALELAFRTQQFSALDLIAKDLDAGSDPKLLR 1084 (1416)
T ss_pred HHHHhhcCchhHHHHHHHHHHcch---h-----hhHHHHHHHhhcchHHHHHHHHhhcccHHHHHHHHhcCCCCCHHHHH
Confidence 333333333344455555554421 1 12234467788888777765322111 000110123555566
Q ss_pred HHHHHHHhccCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-CCCCCHH----HHHHHHHH
Q 004480 368 TIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQA-GCEPNSQ----CCNILLQA 442 (750)
Q Consensus 368 ~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-~~~p~~~----~~~~ll~~ 442 (750)
.-...|+...+++.|..++-...+ |.--+..| +..++.-..++-+.|--. .-.|+.. ....+...
T Consensus 1085 RcadFF~~~~qyekAV~lL~~ar~---------~~~AlqlC-~~~nv~vtee~aE~mTp~Kd~~~~e~~R~~vLeqvae~ 1154 (1416)
T KOG3617|consen 1085 RCADFFENNQQYEKAVNLLCLARE---------FSGALQLC-KNRNVRVTEEFAELMTPTKDDMPNEQERKQVLEQVAEL 1154 (1416)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHH---------HHHHHHHH-hcCCCchhHHHHHhcCcCcCCCccHHHHHHHHHHHHHH
Confidence 666666777777777776654432 22222222 222222222222222111 1123332 34445556
Q ss_pred HHHhCChHHHHHHHHHHhhcccccccCCCCCCchhhhhhhhhhhcccccCCCCccCC----C----ccccccccCCCCcc
Q 004480 443 CVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPN----S----HYSSFDKRFSFKPT 514 (750)
Q Consensus 443 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~----~~~~~~~~~~~~p~ 514 (750)
|.+.|.+..|-+-|-+.-.+ +..|....+.-.+....++.+ . ...+++....++.|
T Consensus 1155 c~qQG~Yh~AtKKfTQAGdK----------------l~AMraLLKSGdt~KI~FFAn~sRqkEiYImAANyLQtlDWq~~ 1218 (1416)
T KOG3617|consen 1155 CLQQGAYHAATKKFTQAGDK----------------LSAMRALLKSGDTQKIRFFANTSRQKEIYIMAANYLQTLDWQDN 1218 (1416)
T ss_pred HHhccchHHHHHHHhhhhhH----------------HHHHHHHHhcCCcceEEEEeeccccceeeeehhhhhhhcccccC
Confidence 77777777666555432111 011110000000000111111 0 01123344455666
Q ss_pred HHHHHHHHHHHHh--cHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 004480 515 TTTYNILMKACCT--DYYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQILKIMREDGMSPDVVAYTTAIKV 592 (750)
Q Consensus 515 ~~~~~~li~~~~~--~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~ 592 (750)
..+.--++..|.+ .++.--.+|+....-.+. ...+|.- ..|-+++|-..+.+...++ -....|+.|-.-
T Consensus 1219 pq~mK~I~tFYTKgqafd~LanFY~~cAqiEie-e~q~ydK------a~gAl~eA~kCl~ka~~k~--~~~t~l~~Lq~~ 1289 (1416)
T KOG3617|consen 1219 PQTMKDIETFYTKGQAFDHLANFYKSCAQIEIE-ELQTYDK------AMGALEEAAKCLLKAEQKN--MSTTGLDALQED 1289 (1416)
T ss_pred hHHHhhhHhhhhcchhHHHHHHHHHHHHHhhHH-HHhhhhH------HhHHHHHHHHHHHHHHhhc--chHHHHHHHHHH
Confidence 6766666666654 233322333222211000 0112211 1244566666666666543 122233433332
Q ss_pred HHHc-----------CCHHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHcCCCCCHH
Q 004480 593 CVRS-----------KRLKQAFSLFEEMKHYQIQPN----LVTYITLLRARSRYGSLHEVQQCLAVYQDMWKAGYKANDT 657 (750)
Q Consensus 593 ~~~~-----------g~~~~A~~~~~~m~~~g~~p~----~~t~~~li~~~~~~g~~~~~~~a~~~~~~m~~~g~~p~~~ 657 (750)
..+. .+..+.+.-...|.+...-|| ...|..||..+.+..++.. |.+.+.+|.++-...|..
T Consensus 1290 ~a~vk~~l~~~q~~~eD~~~~i~qc~~lleep~ld~~Ir~~~~~a~lie~~v~~k~y~~---AyRal~el~~k~p~~~~s 1366 (1416)
T KOG3617|consen 1290 LAKVKVQLRKLQIMKEDAADGIRQCTTLLEEPILDDIIRCTRLFALLIEDHVSRKNYKP---AYRALTELQKKVPNVDLS 1366 (1416)
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHhhCcCCCCcchhHHHHHHHHHHHHhhhhccH---HHHHHHHHhhcCCccchh
Confidence 2221 233444444445555444443 5578889999988888777 455666887765555544
Q ss_pred HH--HHHHHHHHh
Q 004480 658 YL--KELIEEWCE 668 (750)
Q Consensus 658 ~~--~~li~~~~~ 668 (750)
+| ...++..|+
T Consensus 1367 ~~v~~s~vdkv~~ 1379 (1416)
T KOG3617|consen 1367 TFVETSTVDKVCD 1379 (1416)
T ss_pred ccccHHHHHHHHH
Confidence 33 234444454
No 88
>PF12854 PPR_1: PPR repeat
Probab=98.80 E-value=7.3e-09 Score=63.83 Aligned_cols=32 Identities=47% Similarity=0.817 Sum_probs=20.7
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 004480 578 GMSPDVVAYTTAIKVCVRSKRLKQAFSLFEEM 609 (750)
Q Consensus 578 g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 609 (750)
|+.||..|||+||.+||+.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 55666666666666666666666666666665
No 89
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=98.79 E-value=0.00044 Score=72.98 Aligned_cols=479 Identities=10% Similarity=0.028 Sum_probs=264.9
Q ss_pred hhhcCchhHHHHHHHHHHhcCCCccccccchhhhhhHHHHHHhhccCcHHHHHHHHHHHHhCCCCCcccccHHHHHHHHH
Q 004480 123 SIREGRIDCVVGVLKKLNELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCV 202 (750)
Q Consensus 123 ~~~~g~~~~A~~~l~~~~~~~~~p~~~~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 202 (750)
+...++.++++.-+......+..-+......++ ...+-+.-.+..++. .++. +...-+-|.
T Consensus 237 w~~~~~~~~~i~s~~~~l~~~w~~~~l~ka~l~----~~~~~f~~~~~~Ee~-~Lll-li~es~i~R------------- 297 (799)
T KOG4162|consen 237 WKKLSGPKEAIKSYRRALLRSWSLDPLTKARLY----KGFALFLPKSGQEEV-ILLL-LIEESLIPR------------- 297 (799)
T ss_pred hcCCCCchHHHHhhhHHhhcccccchhHHHHHh----hcccccCCCCcHHHH-HHHH-HHHhhcccc-------------
Confidence 446777778888887777765554444333222 222222334555555 2222 222222222
Q ss_pred cCCChHHHHHH---------hhhCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHH
Q 004480 203 NKPDVNLAIRY---------ACIVPRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYM 273 (750)
Q Consensus 203 ~~~~~~~A~~~---------~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 273 (750)
.+.+++... ...+..+..+|..|.-++.+.|+++.+-+.|++.... ..-....|+.+...|...|.-.
T Consensus 298 --e~~~d~ilslm~~~~k~r~~~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~-~~~~~e~w~~~als~saag~~s 374 (799)
T KOG4162|consen 298 --ENIEDAILSLMLLLRKLRLKKFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPF-SFGEHERWYQLALSYSAAGSDS 374 (799)
T ss_pred --ccHHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHh-hhhhHHHHHHHHHHHHHhccch
Confidence 112222111 1123445577888888888999999999999987653 2244667888888888888888
Q ss_pred HHHHHHHHHHhCCCCccHHHHHHHHH-hhcC---ChHHHHHHHHHHHH--cC--CCCCHhhHHHHHHHHHHc--------
Q 004480 274 KSRAIYEDLRSQNVTLNIYVFNSLMN-VNAH---DLKFTLEVYKNMQK--LG--VMADMASYNILLKACCLA-------- 337 (750)
Q Consensus 274 ~A~~~~~~m~~~g~~~~~~~~~~ll~-~~~~---~~~~a~~~~~~m~~--~g--~~~~~~~~~~ll~~~~~~-------- 337 (750)
.|+.+++.-......|+..+--.+.. .|.+ ..++++..-.+... .+ -...+..|..+.-+|...
T Consensus 375 ~Av~ll~~~~~~~~~ps~~s~~Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~s 454 (799)
T KOG4162|consen 375 KAVNLLRESLKKSEQPSDISVLLMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKS 454 (799)
T ss_pred HHHHHHHhhcccccCCCcchHHHHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChH
Confidence 88888887665433344333332322 3443 33333333333332 11 122334444444444422
Q ss_pred ---CChHHHHHHHHHHHHhhhcCCCccCHHHHHHHHHHHHhccCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 004480 338 ---GNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLV 414 (750)
Q Consensus 338 ---g~~~~A~~~~~~~~~~~~~g~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~ 414 (750)
....++.+.+++..+. +.-.|+...|.++= |+..++++.|.+..++..+.+-.-+...|..+.-.+...+++
T Consensus 455 eR~~~h~kslqale~av~~---d~~dp~~if~lalq--~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~ 529 (799)
T KOG4162|consen 455 ERDALHKKSLQALEEAVQF---DPTDPLVIFYLALQ--YAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRL 529 (799)
T ss_pred HHHHHHHHHHHHHHHHHhc---CCCCchHHHHHHHH--HHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhh
Confidence 1234556666666552 22345555555554 778888999999999999886677888999999999999999
Q ss_pred HHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHHhCChHHHHHHHHHHhhc-----------------ccccccCCCCCCch
Q 004480 415 EQAMHLFEEMLQAGCEPN-SQCCNILLQACVEACQFDRAFRLFRSWTLS-----------------KTQVALGEDYDGNT 476 (750)
Q Consensus 415 ~~a~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~-----------------~~~~~~~~~~~~~~ 476 (750)
.+|+.+.+..... .|+ -.....-+..-...++.++++.....+... +.............
T Consensus 530 ~~Al~vvd~al~E--~~~N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~ 607 (799)
T KOG4162|consen 530 KEALDVVDAALEE--FGDNHVLMDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPT 607 (799)
T ss_pred HHHHHHHHHHHHH--hhhhhhhchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCccccc
Confidence 9999998877653 111 111111111112234444444433332211 00000000000000
Q ss_pred ------hhhhhhhhhhcccccCCCCccCCCccccccccCCCC--ccHH------HHHHHHHHHH--hcHHHHHHHHHHHH
Q 004480 477 ------DRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFK--PTTT------TYNILMKACC--TDYYRVKALMNEMR 540 (750)
Q Consensus 477 ------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--p~~~------~~~~li~~~~--~~~~~a~~l~~~m~ 540 (750)
..+......-.... .....+...-+. |+.. .|......+. ++.+++...+.+..
T Consensus 608 ~a~s~sr~ls~l~a~~~~~~----------~se~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~ 677 (799)
T KOG4162|consen 608 DAISTSRYLSSLVASQLKSA----------GSELKLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEAS 677 (799)
T ss_pred ccchhhHHHHHHHHhhhhhc----------ccccccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHH
Confidence 00000000000000 000001111112 2211 1111122222 34566666666665
Q ss_pred HcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcCCHHHHHH--HHHHHHHCCCCCC
Q 004480 541 TVGLSPNHISWTILIDACGGSGNVEGALQILKIMREDGMSPD-VVAYTTAIKVCVRSKRLKQAFS--LFEEMKHYQIQPN 617 (750)
Q Consensus 541 ~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~--~~~~m~~~g~~p~ 617 (750)
+. ..-....|......+...|...+|.+.|..... +.|+ ....+++...+.+.|+..-|.. ++.++.+.+ .-+
T Consensus 678 ~~-~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~--ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~d-p~n 753 (799)
T KOG4162|consen 678 KI-DPLSASVYYLRGLLLEVKGQLEEAKEAFLVALA--LDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLD-PLN 753 (799)
T ss_pred hc-chhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHh--cCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhC-CCC
Confidence 53 223555677777788889999999999998887 4665 6688899999999998877777 999998753 237
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 004480 618 LVTYITLLRARSRYGSLHEVQQCLAVY 644 (750)
Q Consensus 618 ~~t~~~li~~~~~~g~~~~~~~a~~~~ 644 (750)
...|-.+...+-+.|+.+.|.+++..-
T Consensus 754 ~eaW~~LG~v~k~~Gd~~~Aaecf~aa 780 (799)
T KOG4162|consen 754 HEAWYYLGEVFKKLGDSKQAAECFQAA 780 (799)
T ss_pred HHHHHHHHHHHHHccchHHHHHHHHHH
Confidence 899999999999999988766555433
No 90
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=98.77 E-value=9e-06 Score=72.82 Aligned_cols=200 Identities=12% Similarity=-0.017 Sum_probs=155.7
Q ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCccHHHHHHHHHhh
Q 004480 222 ILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVN 301 (750)
Q Consensus 222 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~ 301 (750)
.+..-|.-.|...|++..|..-+++.++..+ .+..+|..+...|.+.|..+.|.+-|++..+..
T Consensus 36 ~arlqLal~YL~~gd~~~A~~nlekAL~~DP-s~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~--------------- 99 (250)
T COG3063 36 KARLQLALGYLQQGDYAQAKKNLEKALEHDP-SYYLAHLVRAHYYQKLGENDLADESYRKALSLA--------------- 99 (250)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcC---------------
Confidence 3456678889999999999999999988542 346688888899999999999999998887652
Q ss_pred cCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHHcCChHHHHHHHHHHHHhhhcCCCccCHHHHHHHHHHHHhccCHHH
Q 004480 302 AHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQM 381 (750)
Q Consensus 302 ~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~g~~~~~~~~~~~li~~~~~~g~~~~ 381 (750)
+-+..+.|.....+|..|++++|...|++... .....--..+|..+.-+..+.|+.+.
T Consensus 100 -------------------p~~GdVLNNYG~FLC~qg~~~eA~q~F~~Al~---~P~Y~~~s~t~eN~G~Cal~~gq~~~ 157 (250)
T COG3063 100 -------------------PNNGDVLNNYGAFLCAQGRPEEAMQQFERALA---DPAYGEPSDTLENLGLCALKAGQFDQ 157 (250)
T ss_pred -------------------CCccchhhhhhHHHHhCCChHHHHHHHHHHHh---CCCCCCcchhhhhhHHHHhhcCCchh
Confidence 34567788888888899999999999988775 22233345678888888888899999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCChHHHHHHHHHHhh
Q 004480 382 ALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTL 461 (750)
Q Consensus 382 a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~ 461 (750)
|...|++.++.... ...+.-.+.....+.|++..|..+++.....+. ++..+.-..|..-...|+.+.+-+.=..+..
T Consensus 158 A~~~l~raL~~dp~-~~~~~l~~a~~~~~~~~y~~Ar~~~~~~~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r 235 (250)
T COG3063 158 AEEYLKRALELDPQ-FPPALLELARLHYKAGDYAPARLYLERYQQRGG-AQAESLLLGIRIAKRLGDRAAAQRYQAQLQR 235 (250)
T ss_pred HHHHHHHHHHhCcC-CChHHHHHHHHHHhcccchHHHHHHHHHHhccc-ccHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 99999888876432 455667777888888999999988888887764 7888777778877788888887776665544
No 91
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=98.73 E-value=0.00018 Score=75.78 Aligned_cols=372 Identities=11% Similarity=0.012 Sum_probs=246.3
Q ss_pred hhhhHHHHHHHHhhcCChHHHHHHHHHHHHhcCChhhHHhhhhHHHHHHHHHhhhhcCchhHHHHHHHHHHhcCCCcccc
Q 004480 70 RNDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLEL 149 (750)
Q Consensus 70 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~p~~~ 149 (750)
.+..|..+.-++...|+++.+.+.|++...... .. ...+......+...|.-..|+.+++........|+..
T Consensus 322 d~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~-----~~---~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~ 393 (799)
T KOG4162|consen 322 DAAIFDHLTFALSRCGQFEVLAEQFEQALPFSF-----GE---HERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDI 393 (799)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhh-----hh---HHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcc
Confidence 367788888899999999999999999865522 11 1222334445778889999999998887643335433
Q ss_pred ccchhhhhhHHHHHHhhccCcHHHHHHHHHHHHhCC-CCC--cccccHHHHHHHHHc----CCCh-------HHHHHHhh
Q 004480 150 FDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFR-LPV--KELDEEFRIVQLCVN----KPDV-------NLAIRYAC 215 (750)
Q Consensus 150 ~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~-~~~--~~~~~~~~l~~~~~~----~~~~-------~~A~~~~~ 215 (750)
..+-...+.|. .+.+.+++++++-.+++... ... -....+..++-+|.. .... .++++.++
T Consensus 394 ---s~~Lmasklc~--e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale 468 (799)
T KOG4162|consen 394 ---SVLLMASKLCI--ERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALE 468 (799)
T ss_pred ---hHHHHHHHHHH--hchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHH
Confidence 22222233332 23577888888877776511 111 112233334444332 1111 23344444
Q ss_pred hC----CCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-CC---
Q 004480 216 IV----PRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQ-NV--- 287 (750)
Q Consensus 216 ~~----~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~--- 287 (750)
.. |.++.+...+.--|+-.++++.|.+...+..+.+..-+...|..+.-.+...+++.+|+.+.+..... |.
T Consensus 469 ~av~~d~~dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~~ 548 (799)
T KOG4162|consen 469 EAVQFDPTDPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNHV 548 (799)
T ss_pred HHHhcCCCCchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhh
Confidence 32 56667777788888999999999999999998766678899999999999999999999998876543 22
Q ss_pred ---------------CccHHHHHHHHHhhc-------------------C------ChHHHHHHHHHH--------HHcC
Q 004480 288 ---------------TLNIYVFNSLMNVNA-------------------H------DLKFTLEVYKNM--------QKLG 319 (750)
Q Consensus 288 ---------------~~~~~~~~~ll~~~~-------------------~------~~~~a~~~~~~m--------~~~g 319 (750)
..-..|+..++..+. | +..++......+ ...|
T Consensus 549 l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~ 628 (799)
T KOG4162|consen 549 LMDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAG 628 (799)
T ss_pred hchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhcc
Confidence 011223333333211 0 111111111111 1111
Q ss_pred ---------CCCCH--------hhHHHHHHHHHHcCChHHHHHHHHHHHHhhhcCCCccCHHHHHHHHHHHHhccCHHHH
Q 004480 320 ---------VMADM--------ASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMA 382 (750)
Q Consensus 320 ---------~~~~~--------~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~g~~~~~~~~~~~li~~~~~~g~~~~a 382 (750)
+.|.. ..|......+.+.+..++|...+.+...+ .+.....|......+...|.+++|
T Consensus 629 se~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~-----~~l~~~~~~~~G~~~~~~~~~~EA 703 (799)
T KOG4162|consen 629 SELKLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKI-----DPLSASVYYLRGLLLEVKGQLEEA 703 (799)
T ss_pred cccccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhc-----chhhHHHHHHhhHHHHHHHhhHHH
Confidence 11111 22334556677788888888777777653 345566777777788899999999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH--HHHHHHHcCCCCCHHHHHHHHHHHHHhCChHHHHHHHHHHh
Q 004480 383 LKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMH--LFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWT 460 (750)
Q Consensus 383 ~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~--~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~ 460 (750)
.+.|......++. ++...+++...+.+.|+...|.. ++.++.+.+ +.+...|..+-..+-+.|+.+.|.+.|....
T Consensus 704 ~~af~~Al~ldP~-hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~d-p~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~ 781 (799)
T KOG4162|consen 704 KEAFLVALALDPD-HVPSMTALAELLLELGSPRLAEKRSLLSDALRLD-PLNHEAWYYLGEVFKKLGDSKQAAECFQAAL 781 (799)
T ss_pred HHHHHHHHhcCCC-CcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHccchHHHHHHHHHHH
Confidence 9999998876422 57788999999999999888888 999999876 5578899999999999999999999998765
Q ss_pred h
Q 004480 461 L 461 (750)
Q Consensus 461 ~ 461 (750)
+
T Consensus 782 q 782 (799)
T KOG4162|consen 782 Q 782 (799)
T ss_pred h
Confidence 4
No 92
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.71 E-value=6e-05 Score=78.16 Aligned_cols=188 Identities=12% Similarity=0.019 Sum_probs=115.0
Q ss_pred hhhhcCchhHHHHHHHHHHhcCCCccccccchhhhhhHHHHHHhhccCcHHHHHHHHHHHHhCCCCCcccccHHH---HH
Q 004480 122 KSIREGRIDCVVGVLKKLNELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFR---IV 198 (750)
Q Consensus 122 ~~~~~g~~~~A~~~l~~~~~~~~~p~~~~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~---l~ 198 (750)
.+...|+++++...+.+..+.. |...+ ......-....+...|++++|.+.+++.+... |.+...+.. ..
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~---~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~--P~~~~a~~~~~~~~ 87 (355)
T cd05804 15 LLLLGGERPAAAAKAAAAAQAL--AARAT---ERERAHVEALSAWIAGDLPKALALLEQLLDDY--PRDLLALKLHLGAF 87 (355)
T ss_pred HHHhcCCcchHHHHHHHHHHHh--ccCCC---HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCcHHHHHHhHHHH
Confidence 3566788888888887777642 21111 11111111222334899999999999988754 666544431 11
Q ss_pred HHHHcCCChHHHHHHhhhC----CCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHH
Q 004480 199 QLCVNKPDVNLAIRYACIV----PRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMK 274 (750)
Q Consensus 199 ~~~~~~~~~~~A~~~~~~~----~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 274 (750)
......+....+.+.+... |........+...+...|++++|...+++..+..+ .+...+..+..++...|++++
T Consensus 88 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p-~~~~~~~~la~i~~~~g~~~e 166 (355)
T cd05804 88 GLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELNP-DDAWAVHAVAHVLEMQGRFKE 166 (355)
T ss_pred HhcccccCchhHHHHHhccCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC-CCcHHHHHHHHHHHHcCCHHH
Confidence 1122245555555555432 22223444566788889999999999999888543 346678888888899999999
Q ss_pred HHHHHHHHHhCCC-CccHH--HHHHH--HHhhcCChHHHHHHHHHHHH
Q 004480 275 SRAIYEDLRSQNV-TLNIY--VFNSL--MNVNAHDLKFTLEVYKNMQK 317 (750)
Q Consensus 275 A~~~~~~m~~~g~-~~~~~--~~~~l--l~~~~~~~~~a~~~~~~m~~ 317 (750)
|...+++...... .++.. .|..+ +....|++++|..+|++...
T Consensus 167 A~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~ 214 (355)
T cd05804 167 GIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIA 214 (355)
T ss_pred HHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhc
Confidence 9999988776432 12221 12122 22344677777777777643
No 93
>PF12854 PPR_1: PPR repeat
Probab=98.70 E-value=1.9e-08 Score=62.01 Aligned_cols=34 Identities=26% Similarity=0.572 Sum_probs=31.8
Q ss_pred cCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Q 004480 542 VGLSPNHISWTILIDACGGSGNVEGALQILKIMR 575 (750)
Q Consensus 542 ~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 575 (750)
+|+.||..|||+||++||+.|++++|.++|++|.
T Consensus 1 ~G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 1 RGCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 4789999999999999999999999999999984
No 94
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.69 E-value=1.3e-05 Score=75.59 Aligned_cols=294 Identities=13% Similarity=0.076 Sum_probs=179.1
Q ss_pred chhhccccCCcchhhhHHHHHHHHhhcCChHHHHHHHHHHHHhcCChhhHHhhhhHHHHHHHHHhhhhcCchhHHHHHHH
Q 004480 58 ALLSTVRRDLSSRNDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLK 137 (750)
Q Consensus 58 ~~~~~l~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~ 137 (750)
.+...+..+|++ -.++..-+..|...|+-..|+.=+...+.. .|+.....+-.+.+ +.++|.++.|..=|+
T Consensus 60 ~yHaAve~dp~~-Y~aifrRaT~yLAmGksk~al~Dl~rVlel--KpDF~~ARiQRg~v------llK~Gele~A~~DF~ 130 (504)
T KOG0624|consen 60 HYHAAVEGDPNN-YQAIFRRATVYLAMGKSKAALQDLSRVLEL--KPDFMAARIQRGVV------LLKQGELEQAEADFD 130 (504)
T ss_pred HHHHHHcCCchh-HHHHHHHHHHHhhhcCCccchhhHHHHHhc--CccHHHHHHHhchh------hhhcccHHHHHHHHH
Confidence 366778999999 556667788999999999999999999999 88877666655555 889999999999999
Q ss_pred HHHhcCCCccccccchhhhh---------hHHHHHHhhccCcHHHHHHHHHHHHhCCCCCcccccHHHHHHHHHcCCChH
Q 004480 138 KLNELGVAPLELFDGSGFKL---------LKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVN 208 (750)
Q Consensus 138 ~~~~~~~~p~~~~~~~~~~~---------l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 208 (750)
..++. .|+.-......+- +..........|+..-|+..+..+++ +.|-+...+..-..+|...|.+.
T Consensus 131 ~vl~~--~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llE--i~~Wda~l~~~Rakc~i~~~e~k 206 (504)
T KOG0624|consen 131 QVLQH--EPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLE--IQPWDASLRQARAKCYIAEGEPK 206 (504)
T ss_pred HHHhc--CCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHh--cCcchhHHHHHHHHHHHhcCcHH
Confidence 99974 4433222111111 11111222336888888888888887 45777777777777777788887
Q ss_pred HHHHHhhhC----CCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 004480 209 LAIRYACIV----PRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRS 284 (750)
Q Consensus 209 ~A~~~~~~~----~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 284 (750)
.|+.-.... .++...+..+-..+-..|+.+.++....+..+ +.||...+-.. |- .+.+....++.|.+
T Consensus 207 ~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLK--ldpdHK~Cf~~---YK---klkKv~K~les~e~ 278 (504)
T KOG0624|consen 207 KAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAENSLKEIRECLK--LDPDHKLCFPF---YK---KLKKVVKSLESAEQ 278 (504)
T ss_pred HHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHHHHHHHHHHc--cCcchhhHHHH---HH---HHHHHHHHHHHHHH
Confidence 776654432 23445666666667777777777777777766 33554322211 11 12222222222221
Q ss_pred CCCCccHHHHHHHHHhhcCChHHHHHHHHHHHHcCCCCCHhhHH---HHHHHHHHcCChHHHHHHHHHHHHhhhcCCCcc
Q 004480 285 QNVTLNIYVFNSLMNVNAHDLKFTLEVYKNMQKLGVMADMASYN---ILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKL 361 (750)
Q Consensus 285 ~g~~~~~~~~~~ll~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~---~ll~~~~~~g~~~~A~~~~~~~~~~~~~g~~~~ 361 (750)
. ...+++.++++-.+...+.........|+ .+-.++...+++.+|++...++.. +.|
T Consensus 279 ~--------------ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~------~d~ 338 (504)
T KOG0624|consen 279 A--------------IEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLD------IDP 338 (504)
T ss_pred H--------------HhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHh------cCc
Confidence 1 01134445555555554433221222222 233344455667777776666665 233
Q ss_pred C-HHHHHHHHHHHHhccCHHHHHHHHHHHHHC
Q 004480 362 D-VFTYSTIVKVFADAKWWQMALKVKEDMLSA 392 (750)
Q Consensus 362 ~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 392 (750)
| +.++.--..+|.-...+++|+.-|+...+.
T Consensus 339 ~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~ 370 (504)
T KOG0624|consen 339 DDVQVLCDRAEAYLGDEMYDDAIHDYEKALEL 370 (504)
T ss_pred hHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhc
Confidence 3 556666666666666777777777666654
No 95
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.65 E-value=0.00077 Score=68.20 Aligned_cols=186 Identities=10% Similarity=0.038 Sum_probs=117.3
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCChHHHHHH
Q 004480 379 WQMALKVKEDMLSAGVTPNTITWSSLINACANAG---LVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRL 455 (750)
Q Consensus 379 ~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g---~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~ 455 (750)
-+++..+++..+..-..-+..+|..+.+.--..- +.+.....+++++..-..--..+|...+...-+..-+..|..+
T Consensus 309 t~e~~~~yEr~I~~l~~~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~i 388 (656)
T KOG1914|consen 309 TDEAASIYERAIEGLLKENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKI 388 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHH
Confidence 3445555555443322223444444433222111 2555666666666543222234577777777777778888888
Q ss_pred HHHHhhcccccccCCCCCCchhhhhhhhhhhcccccCCCCccCCCccccccccCCCCccHHHHHHHHHHHH-hcHHHHHH
Q 004480 456 FRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACC-TDYYRVKA 534 (750)
Q Consensus 456 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~-~~~~~a~~ 534 (750)
|.+..+.+. ..-++..++++|.-+| ++..-|.+
T Consensus 389 F~kaR~~~r----------------------------------------------~~hhVfVa~A~mEy~cskD~~~Afr 422 (656)
T KOG1914|consen 389 FKKAREDKR----------------------------------------------TRHHVFVAAALMEYYCSKDKETAFR 422 (656)
T ss_pred HHHHhhccC----------------------------------------------CcchhhHHHHHHHHHhcCChhHHHH
Confidence 887765432 1237778888888777 57788888
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 004480 535 LMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQILKIMREDGMSPD--VVAYTTAIKVCVRSKRLKQAFSLFEEMKH 611 (750)
Q Consensus 535 l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 611 (750)
+|+-=.+. ..-+..-....++-+.+.++-..|..+|++....++.|| ...|..+|.-=..-|++..+.++-+++..
T Consensus 423 IFeLGLkk-f~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~ 500 (656)
T KOG1914|consen 423 IFELGLKK-FGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFT 500 (656)
T ss_pred HHHHHHHh-cCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 88754443 222334445567777788888888888888887766665 46888888888888888888888877763
No 96
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.63 E-value=0.00012 Score=86.44 Aligned_cols=348 Identities=9% Similarity=-0.059 Sum_probs=161.6
Q ss_pred hhhHHHHHHHHhhcCChHHHHHHHHHHHHhcCChhhHHhhhhHHHHHHHHHhhhhcCchhHHHHHHHHHHhcCCCccccc
Q 004480 71 NDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLELF 150 (750)
Q Consensus 71 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~p~~~~ 150 (750)
...+...+..+...|++.+|...+..+ + ++... ...+......+...|+++.+..+++.+.......+.
T Consensus 341 ~~lh~raa~~~~~~g~~~~Al~~a~~a---~-d~~~~-----~~ll~~~a~~l~~~g~~~~l~~~l~~lp~~~~~~~~-- 409 (903)
T PRK04841 341 PELHRAAAEAWLAQGFPSEAIHHALAA---G-DAQLL-----RDILLQHGWSLFNQGELSLLEECLNALPWEVLLENP-- 409 (903)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHC---C-CHHHH-----HHHHHHhHHHHHhcCChHHHHHHHHhCCHHHHhcCc--
Confidence 344455556666677777666533322 2 11111 122223334455778888888877665321111111
Q ss_pred cchhhhhhHHHHHHhhccCcHHHHHHHHHHHHhCCCCCc--ccccHHHHHHHHHcCCChHHHHHHhhhCCCCcchHHHHH
Q 004480 151 DGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVK--ELDEEFRIVQLCVNKPDVNLAIRYACIVPRADILFCNFV 228 (750)
Q Consensus 151 ~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~l~ 228 (750)
.... ..++ .+...|++++|...++.....-...+ ....... .....+.
T Consensus 410 --~l~~--~~a~-~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~-------------------------~~~~~~a 459 (903)
T PRK04841 410 --RLVL--LQAW-LAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQA-------------------------EFNALRA 459 (903)
T ss_pred --chHH--HHHH-HHHHCCCHHHHHHHHHHHHHhccccCcccchhHHH-------------------------HHHHHHH
Confidence 1111 1111 12237899999998887654211000 0000000 0111122
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC---CccH--HHHH--HH
Q 004480 229 REFGKKRDLVSALRAYDASKKHLSSPN----MYICRTIIDVCGICGDYMKSRAIYEDLRSQNV---TLNI--YVFN--SL 297 (750)
Q Consensus 229 ~~~~~~g~~~~A~~~~~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~---~~~~--~~~~--~l 297 (750)
..+...|++++|...+++..+.....+ ....+.+...+...|++++|...+++.....- .+.. .++. ..
T Consensus 460 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~ 539 (903)
T PRK04841 460 QVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSE 539 (903)
T ss_pred HHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHH
Confidence 334445666666666665544211111 12344444555566666666666665543210 0111 1111 11
Q ss_pred HHhhcCChHHHHHHHHHHHH----cCCC--C-CHhhHHHHHHHHHHcCChHHHHHHHHHHHHhhhcCCCccCHHHHHHHH
Q 004480 298 MNVNAHDLKFTLEVYKNMQK----LGVM--A-DMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIV 370 (750)
Q Consensus 298 l~~~~~~~~~a~~~~~~m~~----~g~~--~-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~g~~~~~~~~~~~li 370 (750)
+....|+++.|...+++... .+.. + ....+..+...+...|++++|...+++................+..+.
T Consensus 540 ~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la 619 (903)
T PRK04841 540 ILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLA 619 (903)
T ss_pred HHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHH
Confidence 11233566666666555433 1211 1 223344555667778999999988888765432211111223344455
Q ss_pred HHHHhccCHHHHHHHHHHHHHCCCC-CCHHHH-----HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC---HHHHHHHHH
Q 004480 371 KVFADAKWWQMALKVKEDMLSAGVT-PNTITW-----SSLINACANAGLVEQAMHLFEEMLQAGCEPN---SQCCNILLQ 441 (750)
Q Consensus 371 ~~~~~~g~~~~a~~~~~~m~~~g~~-p~~~~~-----~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~---~~~~~~ll~ 441 (750)
..+...|++++|.+.+++....... .....+ ...+..+...|+.+.|...+........... ...+..+..
T Consensus 620 ~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~ 699 (903)
T PRK04841 620 KISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIAR 699 (903)
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHH
Confidence 6677788888888887776532100 000001 0112333446666666666655433211111 001233444
Q ss_pred HHHHhCChHHHHHHHHHH
Q 004480 442 ACVEACQFDRAFRLFRSW 459 (750)
Q Consensus 442 ~~~~~g~~~~A~~~~~~~ 459 (750)
++...|+.++|...+++.
T Consensus 700 ~~~~~g~~~~A~~~l~~a 717 (903)
T PRK04841 700 AQILLGQFDEAEIILEEL 717 (903)
T ss_pred HHHHcCCHHHHHHHHHHH
Confidence 555556666666655543
No 97
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.62 E-value=8.5e-06 Score=82.66 Aligned_cols=94 Identities=16% Similarity=0.213 Sum_probs=63.1
Q ss_pred HHHHHHhhcCChHHHHHHHHHHHHhcCChhhHHhhhhHHHHHHHHHhhhhcCchhHHHHHHHHHHhcCCCccccccchhh
Q 004480 76 DMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLELFDGSGF 155 (750)
Q Consensus 76 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~p~~~~~~~~~ 155 (750)
..+..+.+.|++.+|.-+|+.++.. +|.++..+..+++. ....++-..|+..|++.++ +.|+..
T Consensus 290 ~eG~~lm~nG~L~~A~LafEAAVkq--dP~haeAW~~LG~~------qaENE~E~~ai~AL~rcl~--LdP~Nl------ 353 (579)
T KOG1125|consen 290 KEGCNLMKNGDLSEAALAFEAAVKQ--DPQHAEAWQKLGIT------QAENENEQNAISALRRCLE--LDPTNL------ 353 (579)
T ss_pred HHHHHHHhcCCchHHHHHHHHHHhh--ChHHHHHHHHhhhH------hhhccchHHHHHHHHHHHh--cCCccH------
Confidence 3455667788888888888888887 77766554444444 6666777778888888776 566443
Q ss_pred hhhHHHHHHhhccCcHHHHHHHHHHHHhCC
Q 004480 156 KLLKNECQRLLDSGEVEMFVGLMEVLEEFR 185 (750)
Q Consensus 156 ~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~ 185 (750)
.++...+..+...|.-.+|++.++..+...
T Consensus 354 eaLmaLAVSytNeg~q~~Al~~L~~Wi~~~ 383 (579)
T KOG1125|consen 354 EALMALAVSYTNEGLQNQALKMLDKWIRNK 383 (579)
T ss_pred HHHHHHHHHHhhhhhHHHHHHHHHHHHHhC
Confidence 445555555666777778888877766533
No 98
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.61 E-value=0.00025 Score=83.65 Aligned_cols=374 Identities=11% Similarity=0.057 Sum_probs=223.5
Q ss_pred HHHHHHcCCChHHHHHHhhhCCCCcchH---HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHH
Q 004480 197 IVQLCVNKPDVNLAIRYACIVPRADILF---CNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYM 273 (750)
Q Consensus 197 l~~~~~~~~~~~~A~~~~~~~~~~~~~~---~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 273 (750)
....+...|++.+|..++...++..... ......+...|+++.+..+++.+.......+..........+...|+++
T Consensus 347 aa~~~~~~g~~~~Al~~a~~a~d~~~~~~ll~~~a~~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~ 426 (903)
T PRK04841 347 AAEAWLAQGFPSEAIHHALAAGDAQLLRDILLQHGWSLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYS 426 (903)
T ss_pred HHHHHHHCCCHHHHHHHHHHCCCHHHHHHHHHHhHHHHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHH
Confidence 3444556677777776666655443222 2233445566888887777766532111112222333444556789999
Q ss_pred HHHHHHHHHHhCC--C----CccHH----HHHHHHHhhcCChHHHHHHHHHHHHcCCCCCH----hhHHHHHHHHHHcCC
Q 004480 274 KSRAIYEDLRSQN--V----TLNIY----VFNSLMNVNAHDLKFTLEVYKNMQKLGVMADM----ASYNILLKACCLAGN 339 (750)
Q Consensus 274 ~A~~~~~~m~~~g--~----~~~~~----~~~~ll~~~~~~~~~a~~~~~~m~~~g~~~~~----~~~~~ll~~~~~~g~ 339 (750)
++...+......- . .+... .....+....|+++.|...+++....-...+. ...+.+...+...|+
T Consensus 427 ~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~ 506 (903)
T PRK04841 427 EVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGE 506 (903)
T ss_pred HHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCC
Confidence 9999998775431 0 11111 11122223558999999999887663111121 344556667788999
Q ss_pred hHHHHHHHHHHHHhhhc-CCCccCHHHHHHHHHHHHhccCHHHHHHHHHHHHHC----CCC--C-CHHHHHHHHHHHHhc
Q 004480 340 TVLAQEIYGEVKHLEAK-GVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSA----GVT--P-NTITWSSLINACANA 411 (750)
Q Consensus 340 ~~~A~~~~~~~~~~~~~-g~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----g~~--p-~~~~~~~li~~~~~~ 411 (750)
+++|...+++....... |........+..+...+...|++++|...+++.... +.. + ....+..+...+...
T Consensus 507 ~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~ 586 (903)
T PRK04841 507 LARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEW 586 (903)
T ss_pred HHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHh
Confidence 99999999888754322 111112234566677788999999999998887642 211 1 233455566677788
Q ss_pred CCHHHHHHHHHHHHHcC--CCC--CHHHHHHHHHHHHHhCChHHHHHHHHHHhhcccccccCCCCCCchhhhhhhhhhhc
Q 004480 412 GLVEQAMHLFEEMLQAG--CEP--NSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDK 487 (750)
Q Consensus 412 g~~~~a~~~~~~m~~~~--~~p--~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 487 (750)
|++++|...+++..... ..+ ....+..+...+...|+.++|.+.+.........
T Consensus 587 G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~---------------------- 644 (903)
T PRK04841 587 ARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGN---------------------- 644 (903)
T ss_pred cCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhc----------------------
Confidence 99999999998876531 112 2334444566777899999999999887542110
Q ss_pred ccccCCCCccCCCccccccccCCCCccHHH-H---HHHHHHHHhcHHHHHHHHHHHHHcCCCCCH---HHHHHHHHHHHc
Q 004480 488 QSITNTPNFVPNSHYSSFDKRFSFKPTTTT-Y---NILMKACCTDYYRVKALMNEMRTVGLSPNH---ISWTILIDACGG 560 (750)
Q Consensus 488 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~-~---~~li~~~~~~~~~a~~l~~~m~~~~~~p~~---~~~~~li~~~~~ 560 (750)
.+....... . ........++.+.+...+............ ..+..+..++..
T Consensus 645 ---------------------~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~ 703 (903)
T PRK04841 645 ---------------------GRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQIL 703 (903)
T ss_pred ---------------------ccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHH
Confidence 000000000 0 011111234667777776654432111111 113456677889
Q ss_pred CCCHHHHHHHHHHHHHC----CCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC
Q 004480 561 SGNVEGALQILKIMRED----GMSPD-VVAYTTAIKVCVRSKRLKQAFSLFEEMKHYQ 613 (750)
Q Consensus 561 ~g~~~~A~~~~~~m~~~----g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 613 (750)
.|+.++|...+++.... |..++ ..+...+..++.+.|+.++|.+.+.+..+..
T Consensus 704 ~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la 761 (903)
T PRK04841 704 LGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLA 761 (903)
T ss_pred cCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 99999999999988653 33332 3456667778899999999999999998643
No 99
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.60 E-value=3.8e-06 Score=82.28 Aligned_cols=218 Identities=15% Similarity=0.129 Sum_probs=127.7
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCccHHHH---HHHHHhhcC
Q 004480 227 FVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVF---NSLMNVNAH 303 (750)
Q Consensus 227 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~---~~ll~~~~~ 303 (750)
+.+++...|+++.++. ++... ..|.......+...+...++-+.++.-+++...........++ .+.+....|
T Consensus 41 ~~Rs~iAlg~~~~vl~---ei~~~-~~~~l~av~~la~y~~~~~~~e~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~ 116 (290)
T PF04733_consen 41 QYRSYIALGQYDSVLS---EIKKS-SSPELQAVRLLAEYLSSPSDKESALEELKELLADQAGESNEIVQLLAATILFHEG 116 (290)
T ss_dssp HHHHHHHTT-HHHHHH---HS-TT-SSCCCHHHHHHHHHHCTSTTHHCHHHHHHHCCCTS---CHHHHHHHHHHHHCCCC
T ss_pred HHHHHHHcCChhHHHH---HhccC-CChhHHHHHHHHHHHhCccchHHHHHHHHHHHHhccccccHHHHHHHHHHHHHcC
Confidence 4455555565554332 22221 2344444444444333333444444444443333222111122 222222346
Q ss_pred ChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHHcCChHHHHHHHHHHHHhhhcCCCccCHHH---HHHHHHHHHhccCHH
Q 004480 304 DLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFT---YSTIVKVFADAKWWQ 380 (750)
Q Consensus 304 ~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~g~~~~~~~~---~~~li~~~~~~g~~~ 380 (750)
++++|++++..- .+.......+..|.+.++++.|.+.++.|.+ +..|... ..+.+..+.-.+.+.
T Consensus 117 ~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~------~~eD~~l~qLa~awv~l~~g~e~~~ 184 (290)
T PF04733_consen 117 DYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNMQQ------IDEDSILTQLAEAWVNLATGGEKYQ 184 (290)
T ss_dssp HHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHC------CSCCHHHHHHHHHHHHHHHTTTCCC
T ss_pred CHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHHHh------cCCcHHHHHHHHHHHHHHhCchhHH
Confidence 666666665432 3566667788899999999999999999986 3344332 222333333345689
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCh-HHHHHHHHHH
Q 004480 381 MALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQF-DRAFRLFRSW 459 (750)
Q Consensus 381 ~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~-~~A~~~~~~~ 459 (750)
+|.-+|+++.+. ..++..+.+.+..++...|++++|.+++.+..+.. +-+..+...++.+....|+. +.+.+++.++
T Consensus 185 ~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~-~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL 262 (290)
T PF04733_consen 185 DAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKD-PNDPDTLANLIVCSLHLGKPTEAAERYLSQL 262 (290)
T ss_dssp HHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC--CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHC
T ss_pred HHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhc-cCCHHHHHHHHHHHHHhCCChhHHHHHHHHH
Confidence 999999997654 56788888999999999999999999999987654 34566777777777777887 6677788776
Q ss_pred hhc
Q 004480 460 TLS 462 (750)
Q Consensus 460 ~~~ 462 (750)
...
T Consensus 263 ~~~ 265 (290)
T PF04733_consen 263 KQS 265 (290)
T ss_dssp HHH
T ss_pred HHh
Confidence 653
No 100
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.60 E-value=0.00013 Score=67.83 Aligned_cols=64 Identities=9% Similarity=-0.003 Sum_probs=38.2
Q ss_pred CHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 004480 547 NHISWTILIDACGGSGNVEGALQILKIMREDGMS-PDVVAYTTAIKVCVRSKRLKQAFSLFEEMK 610 (750)
Q Consensus 547 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 610 (750)
...||..++-.||+..-++.|-.++.+--..-.+ .+...|+.|=....-.-..++|++-++.+.
T Consensus 309 P~ETFANlLllyCKNeyf~lAADvLAEn~~lTyk~L~~Yly~LLdaLIt~qT~pEea~KKL~~La 373 (459)
T KOG4340|consen 309 PPETFANLLLLYCKNEYFDLAADVLAENAHLTYKFLTPYLYDLLDALITCQTAPEEAFKKLDGLA 373 (459)
T ss_pred ChHHHHHHHHHHhhhHHHhHHHHHHhhCcchhHHHhhHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 3568888899999999999888887654322111 234444433222222445666666655543
No 101
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.59 E-value=0.00073 Score=73.12 Aligned_cols=504 Identities=12% Similarity=0.110 Sum_probs=234.5
Q ss_pred hhhhHHHHHHHHhhcCChHHHHHHHHHHHHhcCChhhHHhhhhHHHHHHHHHhhhhcCchhHHHHHHHHHHhcCCCcccc
Q 004480 70 RNDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLEL 149 (750)
Q Consensus 70 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~p~~~ 149 (750)
+...+..+++.+.++|-+..|++.+...-+.-... ..++.+.. -....|.-.-.++++.+++..|+..+++-|
T Consensus 605 tHyDra~IAqLCEKAGL~qraLehytDl~DIKR~v-Vhth~L~p----EwLv~yFg~lsve~s~eclkaml~~NirqN-- 677 (1666)
T KOG0985|consen 605 THYDRAEIAQLCEKAGLLQRALEHYTDLYDIKRVV-VHTHLLNP----EWLVNYFGSLSVEDSLECLKAMLSANIRQN-- 677 (1666)
T ss_pred ccccHHHHHHHHHhcchHHHHHHhcccHHHHHHHH-HHhccCCH----HHHHHHHHhcCHHHHHHHHHHHHHHHHHhh--
Confidence 34457778888999999999998877665431100 00111111 111225566678899999999998877664
Q ss_pred ccchhhhhhHHHHHHhhccCcHHHHHHHHHHHHhCC----------CCCcccccHHHHHHHHHcCCChHHHHHHhhhC--
Q 004480 150 FDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFR----------LPVKELDEEFRIVQLCVNKPDVNLAIRYACIV-- 217 (750)
Q Consensus 150 ~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~----------~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~-- 217 (750)
+.+.+..+..+.++--.+.-+++|+...... -...++..+..-+++.++.|++.+.+++.+.-
T Consensus 678 -----lQi~VQvatky~eqlg~~~li~lFE~fks~eGL~yfLgSivn~seDpevh~KYIqAA~kt~QikEvERicresn~ 752 (1666)
T KOG0985|consen 678 -----LQIVVQVATKYHEQLGAQALIELFESFKSYEGLYYFLGSIVNFSEDPEVHFKYIQAACKTGQIKEVERICRESNC 752 (1666)
T ss_pred -----hHHHHHHHHHHHHHhCHHHHHHHHHhhccchhHHHHHHHHhccccCchHHHHHHHHHHhhccHHHHHHHHhcccc
Confidence 3445555555554444455556665543221 11345667778888888999999888875441
Q ss_pred ---------------CC--------CcchH-HH------------HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHH
Q 004480 218 ---------------PR--------ADILF-CN------------FVREFGKKRDLVSALRAYDASKKHLSSPNMYICRT 261 (750)
Q Consensus 218 ---------------~~--------~~~~~-~~------------l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 261 (750)
++ +..-+ .- .|..|.+.=+....-.+...+....+ +....-+.
T Consensus 753 YdpErvKNfLkeAkL~DqlPLiiVCDRf~fVhdlvlYLyrnn~~kyIE~yVQkvNps~~p~VvG~LLD~dC-~E~~ik~L 831 (1666)
T KOG0985|consen 753 YDPERVKNFLKEAKLTDQLPLIIVCDRFDFVHDLVLYLYRNNLQKYIEIYVQKVNPSRTPQVVGALLDVDC-SEDFIKNL 831 (1666)
T ss_pred CCHHHHHHHHHhccccccCceEEEecccccHHHHHHHHHHhhHHHHHHHHHhhcCCcccchhhhhhhcCCC-cHHHHHHH
Confidence 00 00001 11 12222222222222222222211111 00111111
Q ss_pred HH------------HHHHhcCCHHHHHHHHHHHHhCCCCccHHHHHHHHHhhcC---ChHHHHHHHHHHHHcCCCCCHhh
Q 004480 262 II------------DVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAH---DLKFTLEVYKNMQKLGVMADMAS 326 (750)
Q Consensus 262 li------------~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~---~~~~a~~~~~~m~~~g~~~~~~~ 326 (750)
++ .-..+.+++.--...++...+.|. .|..++|++-..+.. +.+.-+ .-|+.-
T Consensus 832 i~~v~gq~~~deLv~EvEkRNRLklLlp~LE~~i~eG~-~d~a~hnAlaKIyIDSNNnPE~fL-----------keN~yY 899 (1666)
T KOG0985|consen 832 ILSVRGQFPVDELVEEVEKRNRLKLLLPWLESLIQEGS-QDPATHNALAKIYIDSNNNPERFL-----------KENPYY 899 (1666)
T ss_pred HHHHhccCChHHHHHHHHhhhhHHHHHHHHHHHHhccC-cchHHHhhhhheeecCCCChHHhc-----------ccCCcc
Confidence 11 112223333334444445555553 455666666655432 221111 111111
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHhhhcCCCccCHHHHHHHHHHHHhccCHHHH-----------HHHHHHHHHCCCC
Q 004480 327 YNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMA-----------LKVKEDMLSAGVT 395 (750)
Q Consensus 327 ~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~g~~~~~~~~~~~li~~~~~~g~~~~a-----------~~~~~~m~~~g~~ 395 (750)
=+..+.-||...++.-|.-.|++-..-.+-=++......|-...+.+.+..+.+-- .++.++....+++
T Consensus 900 Ds~vVGkYCEKRDP~lA~vaYerGqcD~elI~vcNeNSlfK~~aRYlv~R~D~~LW~~VL~e~n~~rRqLiDqVv~tal~ 979 (1666)
T KOG0985|consen 900 DSKVVGKYCEKRDPHLACVAYERGQCDLELINVCNENSLFKSQARYLVERSDPDLWAKVLNEENPYRRQLIDQVVQTALP 979 (1666)
T ss_pred hhhHHhhhhcccCCceEEEeecccCCcHHHHHhcCchhHHHHHHHHHHhccChHHHHHHHhccChHHHHHHHHHHHhcCC
Confidence 11223334444333332222211000000000111112233333444444443222 2333444433321
Q ss_pred --CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHHHHhCChHHHHHHHHHHhhcccccccCCC
Q 004480 396 --PNTITWSSLINACANAGLVEQAMHLFEEMLQAG--CEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGED 471 (750)
Q Consensus 396 --p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~--~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 471 (750)
-|....+..+.++...+-..+-.++++++.-.. +.-+...-|.|+-...+ -+..+..+..+++-....+. ...
T Consensus 980 E~~dPe~vS~tVkAfMtadLp~eLIELLEKIvL~~S~Fse~~nLQnLLiLtAik-ad~trVm~YI~rLdnyDa~~-ia~- 1056 (1666)
T KOG0985|consen 980 ETQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSENRNLQNLLILTAIK-ADRTRVMEYINRLDNYDAPD-IAE- 1056 (1666)
T ss_pred ccCChHHHHHHHHHHHhcCCcHHHHHHHHHHhcCCcccccchhhhhhHHHHHhh-cChHHHHHHHHHhccCCchh-HHH-
Confidence 244555666777777788888888887775322 11112222222222222 22233333333322111000 000
Q ss_pred CCCch-hhhhhhhhhhcccccCCCCccCCCccccccccCCCCccHHHHHHHHHHHHhcHHHHHHHHHHHHHcCCCCCHHH
Q 004480 472 YDGNT-DRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTDYYRVKALMNEMRTVGLSPNHIS 550 (750)
Q Consensus 472 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~a~~l~~~m~~~~~~p~~~~ 550 (750)
.... ...++..... + ....+....+.+|.- .+++++|.++-++. -....
T Consensus 1057 -iai~~~LyEEAF~if--------------------k--kf~~n~~A~~VLie~-i~~ldRA~efAe~~------n~p~v 1106 (1666)
T KOG0985|consen 1057 -IAIENQLYEEAFAIF--------------------K--KFDMNVSAIQVLIEN-IGSLDRAYEFAERC------NEPAV 1106 (1666)
T ss_pred -HHhhhhHHHHHHHHH--------------------H--HhcccHHHHHHHHHH-hhhHHHHHHHHHhh------CChHH
Confidence 0000 0000000000 0 012333333333332 12344444443332 24567
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 004480 551 WTILIDACGGSGNVEGALQILKIMREDGMSPDVVAYTTAIKVCVRSKRLKQAFSLFEEMKHYQIQPNLVTYITLLRARSR 630 (750)
Q Consensus 551 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~ 630 (750)
|+.+..+-...|.+.+|++-|-+.. |+..|.-+|....+.|.+++-.+++...++..-.|...+ .||-+|++
T Consensus 1107 WsqlakAQL~~~~v~dAieSyikad------Dps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id~--eLi~AyAk 1178 (1666)
T KOG0985|consen 1107 WSQLAKAQLQGGLVKDAIESYIKAD------DPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYIDS--ELIFAYAK 1178 (1666)
T ss_pred HHHHHHHHHhcCchHHHHHHHHhcC------CcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccchH--HHHHHHHH
Confidence 7788888888888888876665443 667788888888888888888888887777666666554 67788888
Q ss_pred cCCHHHHHH
Q 004480 631 YGSLHEVQQ 639 (750)
Q Consensus 631 ~g~~~~~~~ 639 (750)
.+++.+.++
T Consensus 1179 t~rl~elE~ 1187 (1666)
T KOG0985|consen 1179 TNRLTELEE 1187 (1666)
T ss_pred hchHHHHHH
Confidence 887776544
No 102
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.58 E-value=0.0021 Score=69.28 Aligned_cols=221 Identities=13% Similarity=0.134 Sum_probs=144.1
Q ss_pred HHhhcCChHHHHHHHHHHHHhcCChhhHHhhhhHHHHHHHHHhhhhcCchhHHHHHHHHHHhcCCCccccccchhhhhhH
Q 004480 80 KLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLELFDGSGFKLLK 159 (750)
Q Consensus 80 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~p~~~~~~~~~~~l~ 159 (750)
-....+++..|+....+..+. .|+.......-+. .+.+.|+.++|..+++.... ..++ +..++.++.
T Consensus 18 d~ld~~qfkkal~~~~kllkk--~Pn~~~a~vLkaL------sl~r~gk~~ea~~~Le~~~~--~~~~---D~~tLq~l~ 84 (932)
T KOG2053|consen 18 DLLDSSQFKKALAKLGKLLKK--HPNALYAKVLKAL------SLFRLGKGDEALKLLEALYG--LKGT---DDLTLQFLQ 84 (932)
T ss_pred HHhhhHHHHHHHHHHHHHHHH--CCCcHHHHHHHHH------HHHHhcCchhHHHHHhhhcc--CCCC---chHHHHHHH
Confidence 445689999999999999999 4443322212111 25699999999999887775 3443 334666665
Q ss_pred HHHHHhhccCcHHHHHHHHHHHHhCCCCCcccccHHHHHHHHHcCCChH----HHHHHhhhCCCCcchHHHHHHHHHhcC
Q 004480 160 NECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVN----LAIRYACIVPRADILFCNFVREFGKKR 235 (750)
Q Consensus 160 ~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~----~A~~~~~~~~~~~~~~~~l~~~~~~~g 235 (750)
.. |.+.++.++|..+|++..+.. |. ......+..+|.+.+++. .|.+++..+|.+...+-++++.+.+..
T Consensus 85 ~~---y~d~~~~d~~~~~Ye~~~~~~--P~-eell~~lFmayvR~~~yk~qQkaa~~LyK~~pk~~yyfWsV~Slilqs~ 158 (932)
T KOG2053|consen 85 NV---YRDLGKLDEAVHLYERANQKY--PS-EELLYHLFMAYVREKSYKKQQKAALQLYKNFPKRAYYFWSVISLILQSI 158 (932)
T ss_pred HH---HHHHhhhhHHHHHHHHHHhhC--Cc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccchHHHHHHHHHHhc
Confidence 53 445899999999999988755 65 566666777788877775 567788889999888777777666542
Q ss_pred C----------HHHHHHHHHHHHhCCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHH-HHHhCCCCccHHHHHHHHHh--h
Q 004480 236 D----------LVSALRAYDASKKHLSS-PNMYICRTIIDVCGICGDYMKSRAIYE-DLRSQNVTLNIYVFNSLMNV--N 301 (750)
Q Consensus 236 ~----------~~~A~~~~~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~-~m~~~g~~~~~~~~~~ll~~--~ 301 (750)
. ..-|.+.++.+.+.+.+ -+..-...-...+...|++++|++++. ...+.-...+...-+--+.. .
T Consensus 159 ~~~~~~~~~i~l~LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~ 238 (932)
T KOG2053|consen 159 FSENELLDPILLALAEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKL 238 (932)
T ss_pred cCCcccccchhHHHHHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHH
Confidence 1 23466777777765411 122222222334567789999999994 33333223333333333332 3
Q ss_pred cCChHHHHHHHHHHHHcC
Q 004480 302 AHDLKFTLEVYKNMQKLG 319 (750)
Q Consensus 302 ~~~~~~a~~~~~~m~~~g 319 (750)
.+++.+..++-.++...|
T Consensus 239 l~~w~~l~~l~~~Ll~k~ 256 (932)
T KOG2053|consen 239 LNRWQELFELSSRLLEKG 256 (932)
T ss_pred hcChHHHHHHHHHHHHhC
Confidence 467888888888887776
No 103
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.49 E-value=0.0017 Score=70.46 Aligned_cols=290 Identities=12% Similarity=0.105 Sum_probs=143.8
Q ss_pred HHHHHhhhhcCchhHHHHHHHHHHhcCCCccccccchhhh-hhHHHHHHhhccCcHHHHHHHHHHHHhCCCCCcccccHH
Q 004480 117 ASGIVKSIREGRIDCVVGVLKKLNELGVAPLELFDGSGFK-LLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEF 195 (750)
Q Consensus 117 ~~~~~~~~~~g~~~~A~~~l~~~~~~~~~p~~~~~~~~~~-~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 195 (750)
+-.+.++...+-+.+-+++++++. +.|+.+..+.-+. .++-.+. .-+.....++++++-..+. .
T Consensus 988 S~tVkAfMtadLp~eLIELLEKIv---L~~S~Fse~~nLQnLLiLtAi----kad~trVm~YI~rLdnyDa--------~ 1052 (1666)
T KOG0985|consen 988 SVTVKAFMTADLPNELIELLEKIV---LDNSVFSENRNLQNLLILTAI----KADRTRVMEYINRLDNYDA--------P 1052 (1666)
T ss_pred HHHHHHHHhcCCcHHHHHHHHHHh---cCCcccccchhhhhhHHHHHh----hcChHHHHHHHHHhccCCc--------h
Confidence 455667788888999999999887 5666554443333 2222111 2333445555555443221 1
Q ss_pred HHHHHHHcCCChHHHHHHhhhCCCCc--------------------------chHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 004480 196 RIVQLCVNKPDVNLAIRYACIVPRAD--------------------------ILFCNFVREFGKKRDLVSALRAYDASKK 249 (750)
Q Consensus 196 ~l~~~~~~~~~~~~A~~~~~~~~~~~--------------------------~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 249 (750)
.++..+...+-+++|..+|.++.-+. .+|..+..+-.+.|.+.+|++-|-+.
T Consensus 1053 ~ia~iai~~~LyEEAF~ifkkf~~n~~A~~VLie~i~~ldRA~efAe~~n~p~vWsqlakAQL~~~~v~dAieSyika-- 1130 (1666)
T KOG0985|consen 1053 DIAEIAIENQLYEEAFAIFKKFDMNVSAIQVLIENIGSLDRAYEFAERCNEPAVWSQLAKAQLQGGLVKDAIESYIKA-- 1130 (1666)
T ss_pred hHHHHHhhhhHHHHHHHHHHHhcccHHHHHHHHHHhhhHHHHHHHHHhhCChHHHHHHHHHHHhcCchHHHHHHHHhc--
Confidence 24445555556666666666654333 45555555555555555555544332
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCccHHHHHHHHHhhcCChHHHHHHHHHHHHcCCCCCHhhHHH
Q 004480 250 HLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKFTLEVYKNMQKLGVMADMASYNI 329 (750)
Q Consensus 250 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ 329 (750)
.|+..|..+++...+.|.|++-.+.+...++..-.|.+.+--.+-.+..+++.+.++.. .-||......
T Consensus 1131 ----dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id~eLi~AyAkt~rl~elE~fi-------~gpN~A~i~~ 1199 (1666)
T KOG0985|consen 1131 ----DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYIDSELIFAYAKTNRLTELEEFI-------AGPNVANIQQ 1199 (1666)
T ss_pred ----CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccchHHHHHHHHHhchHHHHHHHh-------cCCCchhHHH
Confidence 23445555666666666666655555544444434443332222222222222222111 1345555555
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHhhhcCCCccCHHHHHHHHHHHHhccCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 004480 330 LLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACA 409 (750)
Q Consensus 330 ll~~~~~~g~~~~A~~~~~~~~~~~~~g~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~ 409 (750)
+.+-|...|.++.|.-+|..+ .-|..|...+...|++..|.+.-++. .+..||-.+-.+|.
T Consensus 1200 vGdrcf~~~~y~aAkl~y~~v-------------SN~a~La~TLV~LgeyQ~AVD~aRKA------ns~ktWK~VcfaCv 1260 (1666)
T KOG0985|consen 1200 VGDRCFEEKMYEAAKLLYSNV-------------SNFAKLASTLVYLGEYQGAVDAARKA------NSTKTWKEVCFACV 1260 (1666)
T ss_pred HhHHHhhhhhhHHHHHHHHHh-------------hhHHHHHHHHHHHHHHHHHHHHhhhc------cchhHHHHHHHHHh
Confidence 555555555555555444322 23455555555566665555544332 14455555555555
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCChHHHHHHHHH
Q 004480 410 NAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRS 458 (750)
Q Consensus 410 ~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~ 458 (750)
..+.+..| +|.-..+-....-..-++.-|...|-+++-..+++.
T Consensus 1261 d~~EFrlA-----QiCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea 1304 (1666)
T KOG0985|consen 1261 DKEEFRLA-----QICGLNIIVHADELEELIEYYQDRGYFEELISLLEA 1304 (1666)
T ss_pred chhhhhHH-----HhcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHh
Confidence 44433322 222222222333444555556666666665555543
No 104
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.48 E-value=0.0021 Score=67.31 Aligned_cols=266 Identities=12% Similarity=0.124 Sum_probs=156.9
Q ss_pred hhhHHHHHHHHhhcCChHHHHHHHHHHHHhcC--ChhhHHhhhhHHHH-HHHHHhhhhcCchhHHHHHHHHHHhcCCCcc
Q 004480 71 NDYYADMASKLAKDGRLEEFAMIVESVVVSEG--NVSKFASMLSLEMV-ASGIVKSIREGRIDCVVGVLKKLNELGVAPL 147 (750)
Q Consensus 71 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~p~~~~~~~~~~~~-~~~~~~~~~~g~~~~A~~~l~~~~~~~~~p~ 147 (750)
...|...++.+-+..++++|++.|.+--+-+. +..++......-.+ ......+...|+++.|+.-|-++..
T Consensus 661 ~elydkagdlfeki~d~dkale~fkkgdaf~kaielarfafp~evv~lee~wg~hl~~~~q~daainhfiea~~------ 734 (1636)
T KOG3616|consen 661 GELYDKAGDLFEKIHDFDKALECFKKGDAFGKAIELARFAFPEEVVKLEEAWGDHLEQIGQLDAAINHFIEANC------ 734 (1636)
T ss_pred hHHHHhhhhHHHHhhCHHHHHHHHHcccHHHHHHHHHHhhCcHHHhhHHHHHhHHHHHHHhHHHHHHHHHHhhh------
Confidence 44566666677777777777777754322211 11111110000000 1122234567777777766644332
Q ss_pred ccccchhhhhhHHHHHHhhccCcHHHHHHHHHHHHhCCCCCcccccHHHHHHHHHcCCChHHHHHHhhhCCCCcchHHHH
Q 004480 148 ELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRADILFCNF 227 (750)
Q Consensus 148 ~~~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~l 227 (750)
++++..+.....++.+|+.+++.+.+... ..-+|-.+..-|...|+++.|.++|... ..++-.
T Consensus 735 ----------~~kaieaai~akew~kai~ildniqdqk~---~s~yy~~iadhyan~~dfe~ae~lf~e~----~~~~da 797 (1636)
T KOG3616|consen 735 ----------LIKAIEAAIGAKEWKKAISILDNIQDQKT---ASGYYGEIADHYANKGDFEIAEELFTEA----DLFKDA 797 (1636)
T ss_pred ----------HHHHHHHHhhhhhhhhhHhHHHHhhhhcc---ccccchHHHHHhccchhHHHHHHHHHhc----chhHHH
Confidence 33433344447899999999998776442 2345677888899999999999998664 457778
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCccHHHHHHHHHhhcCChHH
Q 004480 228 VREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKF 307 (750)
Q Consensus 228 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~ 307 (750)
|.+|.+.|+|.+|.++-.+.. |++.....|-+-..-+-+.|++.+|.++|-... .|+.. +-|.-..|..+.
T Consensus 798 i~my~k~~kw~da~kla~e~~--~~e~t~~~yiakaedldehgkf~eaeqlyiti~----~p~~a---iqmydk~~~~dd 868 (1636)
T KOG3616|consen 798 IDMYGKAGKWEDAFKLAEECH--GPEATISLYIAKAEDLDEHGKFAEAEQLYITIG----EPDKA---IQMYDKHGLDDD 868 (1636)
T ss_pred HHHHhccccHHHHHHHHHHhc--CchhHHHHHHHhHHhHHhhcchhhhhheeEEcc----CchHH---HHHHHhhCcchH
Confidence 999999999999999887764 344456667777777788899999888875432 12210 001111122333
Q ss_pred HHHHHHHHHHcCCCCC--HhhHHHHHHHHHHcCChHHHHHHHHHHHHhhhcCCCccCHHHHHHHHHHHHhccCHHHHHHH
Q 004480 308 TLEVYKNMQKLGVMAD--MASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKV 385 (750)
Q Consensus 308 a~~~~~~m~~~g~~~~--~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~g~~~~~~~~~~~li~~~~~~g~~~~a~~~ 385 (750)
.+++..+- .|+ ..|...+..-|...|++..|..-|-+... |.+-++.|-..+.|++|.++
T Consensus 869 mirlv~k~-----h~d~l~dt~~~f~~e~e~~g~lkaae~~flea~d-------------~kaavnmyk~s~lw~dayri 930 (1636)
T KOG3616|consen 869 MIRLVEKH-----HGDHLHDTHKHFAKELEAEGDLKAAEEHFLEAGD-------------FKAAVNMYKASELWEDAYRI 930 (1636)
T ss_pred HHHHHHHh-----ChhhhhHHHHHHHHHHHhccChhHHHHHHHhhhh-------------HHHHHHHhhhhhhHHHHHHH
Confidence 33332221 222 23444556666677777777766654332 44555666666777666655
Q ss_pred H
Q 004480 386 K 386 (750)
Q Consensus 386 ~ 386 (750)
-
T Consensus 931 a 931 (1636)
T KOG3616|consen 931 A 931 (1636)
T ss_pred H
Confidence 4
No 105
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.47 E-value=0.00038 Score=73.55 Aligned_cols=385 Identities=11% Similarity=0.084 Sum_probs=196.8
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-CC--------Cc-cHHHHHHHHHh
Q 004480 231 FGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQ-NV--------TL-NIYVFNSLMNV 300 (750)
Q Consensus 231 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~--------~~-~~~~~~~ll~~ 300 (750)
|..-|+.+.|.+-.+-+. +..+|..+.+.|.+..+++-|.-.+..|... |. .+ +...-.+++..
T Consensus 738 yvtiG~MD~AfksI~~Ik------S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~e~eakvAvLAi 811 (1416)
T KOG3617|consen 738 YVTIGSMDAAFKSIQFIK------SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGEEDEAKVAVLAI 811 (1416)
T ss_pred EEEeccHHHHHHHHHHHh------hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCcchhhHHHHHHH
Confidence 444566666666555443 2455666666666666666665555554321 10 11 23333444445
Q ss_pred hcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHHcCChHHHHHHHHHHHHhhhcCCCccCHHHHHHHHHHHHhccCHH
Q 004480 301 NAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQ 380 (750)
Q Consensus 301 ~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~g~~~~~~~~~~~li~~~~~~g~~~ 380 (750)
..|.+++|+.+|++-.+ |..|=+.|...|.+++|.++-+.-.+ +. =..||.....-+-..++.+
T Consensus 812 eLgMlEeA~~lYr~ckR---------~DLlNKlyQs~g~w~eA~eiAE~~DR------iH-Lr~Tyy~yA~~Lear~Di~ 875 (1416)
T KOG3617|consen 812 ELGMLEEALILYRQCKR---------YDLLNKLYQSQGMWSEAFEIAETKDR------IH-LRNTYYNYAKYLEARRDIE 875 (1416)
T ss_pred HHhhHHHHHHHHHHHHH---------HHHHHHHHHhcccHHHHHHHHhhccc------ee-hhhhHHHHHHHHHhhccHH
Confidence 55777788888877765 33344566677888888777653222 11 1235555555566677777
Q ss_pred HHHHHHHHHHHC----------CC---------CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 004480 381 MALKVKEDMLSA----------GV---------TPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQ 441 (750)
Q Consensus 381 ~a~~~~~~m~~~----------g~---------~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~ 441 (750)
.|++.|++.... .+ ..|...|......+...|+.+.|+.+|....+ |-++++
T Consensus 876 ~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D---------~fs~Vr 946 (1416)
T KOG3617|consen 876 AALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD---------YFSMVR 946 (1416)
T ss_pred HHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh---------hhhhee
Confidence 777777653211 00 11223333444444444555555555544432 333344
Q ss_pred HHHHhCChHHHHHHHHHHhhcccccccCCCCCCchhhhhhhhhhhcccccCCCCccCCCccccccccCCCCccHHHHHHH
Q 004480 442 ACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNIL 521 (750)
Q Consensus 442 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l 521 (750)
..|-.|+.++|-++-++ .-|....-.+
T Consensus 947 I~C~qGk~~kAa~iA~e-----------------------------------------------------sgd~AAcYhl 973 (1416)
T KOG3617|consen 947 IKCIQGKTDKAARIAEE-----------------------------------------------------SGDKAACYHL 973 (1416)
T ss_pred eEeeccCchHHHHHHHh-----------------------------------------------------cccHHHHHHH
Confidence 44444444444444332 2233334344
Q ss_pred HHHHHh--cHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH---------------HcCCCHHHHHHHHHHHHHCCCCCCHH
Q 004480 522 MKACCT--DYYRVKALMNEMRTVGLSPNHISWTILIDAC---------------GGSGNVEGALQILKIMREDGMSPDVV 584 (750)
Q Consensus 522 i~~~~~--~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~---------------~~~g~~~~A~~~~~~m~~~g~~p~~~ 584 (750)
...|-+ +..+|..+|.+... |...|+.| +...+.-.|-++|++.- .
T Consensus 974 aR~YEn~g~v~~Av~FfTrAqa---------fsnAIRlcKEnd~~d~L~nlal~s~~~d~v~aArYyEe~g---~----- 1036 (1416)
T KOG3617|consen 974 ARMYENDGDVVKAVKFFTRAQA---------FSNAIRLCKENDMKDRLANLALMSGGSDLVSAARYYEELG---G----- 1036 (1416)
T ss_pred HHHhhhhHHHHHHHHHHHHHHH---------HHHHHHHHHhcCHHHHHHHHHhhcCchhHHHHHHHHHHcc---h-----
Confidence 444443 33455555554432 22222221 12223344444544432 1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHH--------HHHCCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHcCCCC
Q 004480 585 AYTTAIKVCVRSKRLKQAFSLFEE--------MKHYQIQP--NLVTYITLLRARSRYGSLHEVQQCLAVYQDMWKAGYKA 654 (750)
Q Consensus 585 ~~~~li~~~~~~g~~~~A~~~~~~--------m~~~g~~p--~~~t~~~li~~~~~~g~~~~~~~a~~~~~~m~~~g~~p 654 (750)
-+...+..|-++|.+.+|+++-=+ ++...+.| |+...+---+.++...++++ |..++-...
T Consensus 1037 ~~~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~DLd~~sDp~ll~RcadFF~~~~qyek---AV~lL~~ar------ 1107 (1416)
T KOG3617|consen 1037 YAHKAVMLYHKAGMIGKALELAFRTQQFSALDLIAKDLDAGSDPKLLRRCADFFENNQQYEK---AVNLLCLAR------ 1107 (1416)
T ss_pred hhhHHHHHHHhhcchHHHHHHHHhhcccHHHHHHHHhcCCCCCHHHHHHHHHHHHhHHHHHH---HHHHHHHHH------
Confidence 123445667888888888776322 22233333 56666655556655555444 444433221
Q ss_pred CHHHHHHHHHHHHhhhhhhhhcccccchhhhcccCC-CchhHHHHHHHHHHhhhhhhhhhhhhccccchhhHHHHHH
Q 004480 655 NDTYLKELIEEWCEGVIQDKNQNQGEVTLCRRTNSQ-RPQSLLLEKVAVHLQKSAAENLAIDLRGLTKVEARIIVLA 730 (750)
Q Consensus 655 ~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~l~~l~~~~~~~~~~~ 730 (750)
.|.--+.-|...+++--.+..+.+...+.+... ....-+++.+...+..-+++..+ -+.+...|++..++.
T Consensus 1108 ---~~~~AlqlC~~~nv~vtee~aE~mTp~Kd~~~~e~~R~~vLeqvae~c~qQG~Yh~A--tKKfTQAGdKl~AMr 1179 (1416)
T KOG3617|consen 1108 ---EFSGALQLCKNRNVRVTEEFAELMTPTKDDMPNEQERKQVLEQVAELCLQQGAYHAA--TKKFTQAGDKLSAMR 1179 (1416)
T ss_pred ---HHHHHHHHHhcCCCchhHHHHHhcCcCcCCCccHHHHHHHHHHHHHHHHhccchHHH--HHHHhhhhhHHHHHH
Confidence 122223322234555555555555566644333 35677889998888777765554 667777788877765
No 106
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.46 E-value=2.9e-05 Score=75.04 Aligned_cols=194 Identities=9% Similarity=-0.036 Sum_probs=130.2
Q ss_pred hhhhHHHHHHHHhhcCChHHHHHHHHHHHHhcCChhhHHhhhhHHHHHHHHHhhhhcCchhHHHHHHHHHHhcCCCcccc
Q 004480 70 RNDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLEL 149 (750)
Q Consensus 70 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~p~~~ 149 (750)
....+..++..+.+.|++++|...+++++.. .|.... .......+...+...|++++|+..++++++. .|+..
T Consensus 32 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~--~p~~~~---~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~--~p~~~ 104 (235)
T TIGR03302 32 PAEELYEEAKEALDSGDYTEAIKYFEALESR--YPFSPY---AEQAQLDLAYAYYKSGDYAEAIAAADRFIRL--HPNHP 104 (235)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCchh---HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--CcCCC
Confidence 3677888899999999999999999999988 443221 1223344556688999999999999999984 45433
Q ss_pred ccchhhhhhHHHHHHh-----hccCcHHHHHHHHHHHHhCCCCCcccccHHHHHHHHHcCCChHHHHHHhhhCCCCcchH
Q 004480 150 FDGSGFKLLKNECQRL-----LDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRADILF 224 (750)
Q Consensus 150 ~~~~~~~~l~~~~~~~-----~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~ 224 (750)
.....+..+....... ...|++++|.+.++++.... |.+...+..+..... ..... ....
T Consensus 105 ~~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~a~~~~~~----~~~~~---------~~~~ 169 (235)
T TIGR03302 105 DADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRY--PNSEYAPDAKKRMDY----LRNRL---------AGKE 169 (235)
T ss_pred chHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHC--CCChhHHHHHHHHHH----HHHHH---------HHHH
Confidence 2111111111111110 12378999999999998755 655443332222111 00000 0122
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCC-C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 004480 225 CNFVREFGKKRDLVSALRAYDASKKHLSS-P-NMYICRTIIDVCGICGDYMKSRAIYEDLRSQ 285 (750)
Q Consensus 225 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 285 (750)
..+...|.+.|++.+|+..|+...+..+. | ....+..+..++.+.|++++|...++.+..+
T Consensus 170 ~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 170 LYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 35677889999999999999999875432 3 3568889999999999999999999888765
No 107
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.44 E-value=0.0029 Score=64.28 Aligned_cols=349 Identities=10% Similarity=0.027 Sum_probs=198.6
Q ss_pred HHHHHHhhcCChHHHHHHHHHHHHhcCChhhHHhhhhHHHHHHHHHhhhhcCchhHHHHHHHHHHhcCCCccccccchhh
Q 004480 76 DMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLELFDGSGF 155 (750)
Q Consensus 76 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~p~~~~~~~~~ 155 (750)
.-..+....|++++|+.+|..++.. +|. ++++. ++-..+|...|++.+|++=-.+-.+ +.|+.. .-|
T Consensus 7 ~kgnaa~s~~d~~~ai~~~t~ai~l--~p~--nhvly----Snrsaa~a~~~~~~~al~da~k~~~--l~p~w~---kgy 73 (539)
T KOG0548|consen 7 EKGNAAFSSGDFETAIRLFTEAIML--SPT--NHVLY----SNRSAAYASLGSYEKALKDATKTRR--LNPDWA---KGY 73 (539)
T ss_pred HHHHhhcccccHHHHHHHHHHHHcc--CCC--ccchh----cchHHHHHHHhhHHHHHHHHHHHHh--cCCchh---hHH
Confidence 3455677789999999999999988 555 22222 4555568899999998877666665 677543 223
Q ss_pred hhhHHHHHHhhccCcHHHHHHHHHHHHhCCCCCcccccHHHHHHHHHcCCChHHHHH---HhhhCCCC--------cchH
Q 004480 156 KLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIR---YACIVPRA--------DILF 224 (750)
Q Consensus 156 ~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~---~~~~~~~~--------~~~~ 224 (750)
-+..+.+...|++++|+..|.+-++.. |++......+..++.......+... ++.....+ ...|
T Consensus 74 ---~r~Gaa~~~lg~~~eA~~ay~~GL~~d--~~n~~L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~ 148 (539)
T KOG0548|consen 74 ---SRKGAALFGLGDYEEAILAYSEGLEKD--PSNKQLKTGLAQAYLEDYAADQLFTKPYFHEKLANLPLTNYSLSDPAY 148 (539)
T ss_pred ---HHhHHHHHhcccHHHHHHHHHHHhhcC--CchHHHHHhHHHhhhHHHHhhhhccCcHHHHHhhcChhhhhhhccHHH
Confidence 333333333799999999999987755 8777777777776621111100000 01111000 1122
Q ss_pred HHHHHHHHhc----------CCHHHHHHHHHH-----HHhC-------CCCC----------------------CHHHHH
Q 004480 225 CNFVREFGKK----------RDLVSALRAYDA-----SKKH-------LSSP----------------------NMYICR 260 (750)
Q Consensus 225 ~~l~~~~~~~----------g~~~~A~~~~~~-----~~~~-------~~~~----------------------~~~~~~ 260 (750)
..++..+-+. .++..+.-++.. +... +..| -..-..
T Consensus 149 ~~~l~~~~~~p~~l~~~l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek 228 (539)
T KOG0548|consen 149 VKILEIIQKNPTSLKLYLNDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEK 228 (539)
T ss_pred HHHHHHhhcCcHhhhcccccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHH
Confidence 2222222111 111111111110 0000 0011 123466
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCccHHHHHHHHH-hhc--C-------ChHHHHHHHHHHHHcCCCCCHhhHHHH
Q 004480 261 TIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMN-VNA--H-------DLKFTLEVYKNMQKLGVMADMASYNIL 330 (750)
Q Consensus 261 ~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~-~~~--~-------~~~~a~~~~~~m~~~g~~~~~~~~~~l 330 (750)
.+.++.-+..++..|++-+....+.. ...+|...+. ++. + ..+.+.+.-.++...- ..=...+..+
T Consensus 229 ~lgnaaykkk~f~~a~q~y~~a~el~---~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~-klIak~~~r~ 304 (539)
T KOG0548|consen 229 ELGNAAYKKKDFETAIQHYAKALELA---TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADY-KLIAKALARL 304 (539)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHhHh---hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHH-HHHHHHHHHh
Confidence 77887788889999999998887653 3334433333 232 2 2233333333332210 0001122224
Q ss_pred HHHHHHcCChHHHHHHHHHHHHhhhcCCCccCHHHHHHHHHHHHhccCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 004480 331 LKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACAN 410 (750)
Q Consensus 331 l~~~~~~g~~~~A~~~~~~~~~~~~~g~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~ 410 (750)
..+|.+.++++.|...|.+...- ..+ -..+.+....++++...+...-.+... ..-...=.+.+.+
T Consensus 305 g~a~~k~~~~~~ai~~~~kaLte------~Rt-------~~~ls~lk~~Ek~~k~~e~~a~~~pe~-A~e~r~kGne~Fk 370 (539)
T KOG0548|consen 305 GNAYTKREDYEGAIKYYQKALTE------HRT-------PDLLSKLKEAEKALKEAERKAYINPEK-AEEEREKGNEAFK 370 (539)
T ss_pred hhhhhhHHhHHHHHHHHHHHhhh------hcC-------HHHHHHHHHHHHHHHHHHHHHhhChhH-HHHHHHHHHHHHh
Confidence 45777778889999888886541 111 112334455566666665555443332 2222233777889
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCChHHHHHHHHHHhh
Q 004480 411 AGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTL 461 (750)
Q Consensus 411 ~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~ 461 (750)
.|++..|+..|.++++.. +-|...|....-+|.+.|.+..|++--+...+
T Consensus 371 ~gdy~~Av~~YteAIkr~-P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ie 420 (539)
T KOG0548|consen 371 KGDYPEAVKHYTEAIKRD-PEDARLYSNRAACYLKLGEYPEALKDAKKCIE 420 (539)
T ss_pred ccCHHHHHHHHHHHHhcC-CchhHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 999999999999999885 55788999999999999999999887665443
No 108
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.43 E-value=1.4e-05 Score=78.25 Aligned_cols=148 Identities=9% Similarity=0.005 Sum_probs=73.4
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCccHHH---HHHHHHhhcC--Ch
Q 004480 231 FGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYV---FNSLMNVNAH--DL 305 (750)
Q Consensus 231 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~---~~~ll~~~~~--~~ 305 (750)
+...|++++|+++++.. .+.......+..|.+.++++.|.+.++.|.+. ..|... ..+.+....| .+
T Consensus 112 ~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~--~eD~~l~qLa~awv~l~~g~e~~ 183 (290)
T PF04733_consen 112 LFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNMQQI--DEDSILTQLAEAWVNLATGGEKY 183 (290)
T ss_dssp HCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCC--SCCHHHHHHHHHHHHHHHTTTCC
T ss_pred HHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCcHHHHHHHHHHHHHHhCchhH
Confidence 33444555554444321 23334444444555555555555555555433 222221 1122222222 45
Q ss_pred HHHHHHHHHHHHcCCCCCHhhHHHHHHHHHHcCChHHHHHHHHHHHHhhhcCCCccCHHHHHHHHHHHHhccCH-HHHHH
Q 004480 306 KFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWW-QMALK 384 (750)
Q Consensus 306 ~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~g~~~~~~~~~~~li~~~~~~g~~-~~a~~ 384 (750)
.+|..+|+++... ..+++.+.+.+..++...|++++|.+++.+.... -+-+..+...++.+....|+. +.+.+
T Consensus 184 ~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~-----~~~~~d~LaNliv~~~~~gk~~~~~~~ 257 (290)
T PF04733_consen 184 QDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEK-----DPNDPDTLANLIVCSLHLGKPTEAAER 257 (290)
T ss_dssp CHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC------CCHHHHHHHHHHHHHHTT-TCHHHHH
T ss_pred HHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh-----ccCCHHHHHHHHHHHHHhCCChhHHHH
Confidence 5566666665443 3456667777777777777777777777765431 123445555566666666665 55666
Q ss_pred HHHHHHHC
Q 004480 385 VKEDMLSA 392 (750)
Q Consensus 385 ~~~~m~~~ 392 (750)
.+.++...
T Consensus 258 ~l~qL~~~ 265 (290)
T PF04733_consen 258 YLSQLKQS 265 (290)
T ss_dssp HHHHCHHH
T ss_pred HHHHHHHh
Confidence 77776654
No 109
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.38 E-value=0.0022 Score=69.71 Aligned_cols=379 Identities=10% Similarity=0.001 Sum_probs=205.5
Q ss_pred CccccccchhhccccCCcchhhhHHHHHHHHhhcCChHHHHHHHHHHHHhcCChhhHHhhhhHHHHHHHHHhhhhcCchh
Q 004480 51 TVHSSQTALLSTVRRDLSSRNDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRID 130 (750)
Q Consensus 51 ~~~~~~~~~~~~l~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~ 130 (750)
........|...++.+|.. ...|..++++|.+.|++..|+..|.++... +|.++.......++ .+..|.+.
T Consensus 577 n~h~aV~~fQsALR~dPkD-~n~W~gLGeAY~~sGry~~AlKvF~kAs~L--rP~s~y~~fk~A~~------ecd~GkYk 647 (1238)
T KOG1127|consen 577 NLHGAVCEFQSALRTDPKD-YNLWLGLGEAYPESGRYSHALKVFTKASLL--RPLSKYGRFKEAVM------ECDNGKYK 647 (1238)
T ss_pred chhhHHHHHHHHhcCCchh-HHHHHHHHHHHHhcCceehHHHhhhhhHhc--CcHhHHHHHHHHHH------HHHhhhHH
Confidence 3344455577779999999 999999999999999999999999999888 77766554444444 67899999
Q ss_pred HHHHHHHHHHhcCCCccccccchhhhhhHHHHHHhhccCcHHHHHHHHHHHHhCC------CCCcccccHHHHHHHHHcC
Q 004480 131 CVVGVLKKLNELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFR------LPVKELDEEFRIVQLCVNK 204 (750)
Q Consensus 131 ~A~~~l~~~~~~~~~p~~~~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~------~~~~~~~~~~~l~~~~~~~ 204 (750)
+|+..++..+..- .--......+...+++....+.-.|-...|.+.+++.++.- ...++...|..+..+|
T Consensus 648 eald~l~~ii~~~-s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h~~~~~~~~Wi~asdac--- 723 (1238)
T KOG1127|consen 648 EALDALGLIIYAF-SLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIHSLQSDRLQWIVASDAC--- 723 (1238)
T ss_pred HHHHHHHHHHHHH-HHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHhHHH---
Confidence 9999999887531 00000111233344443333333555556666655543211 0012222233333222
Q ss_pred CChHHHHHHhhhCCCCcchHHHHHHHHHh----cCCH---H---HHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----c-
Q 004480 205 PDVNLAIRYACIVPRADILFCNFVREFGK----KRDL---V---SALRAYDASKKHLSSPNMYICRTIIDVCGI----C- 269 (750)
Q Consensus 205 ~~~~~A~~~~~~~~~~~~~~~~l~~~~~~----~g~~---~---~A~~~~~~~~~~~~~~~~~~~~~li~~~~~----~- 269 (750)
..|....++ ..-..++..+.. .+.. + -+.+.+-.-.+ ...+..+|..++..|.+ .
T Consensus 724 -------~~f~q~e~~-~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hls--l~~~~~~WyNLGinylr~f~~l~ 793 (1238)
T KOG1127|consen 724 -------YIFSQEEPS-IVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLS--LAIHMYPWYNLGINYLRYFLLLG 793 (1238)
T ss_pred -------HHHHHhccc-chHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHH--HhhccchHHHHhHHHHHHHHHcC
Confidence 233333322 111112222221 2211 1 11111111111 11223344444433332 1
Q ss_pred ---CCHHHHHHHHHHHHhCCCCccHHHHHHHHHhhc-CChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHHcCChHHHHH
Q 004480 270 ---GDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNA-HDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQE 345 (750)
Q Consensus 270 ---g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~-~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~ 345 (750)
.+...|+..+...++.. .-+..+||.|=-.-. |++.-+.-.|-.-... .+.+..+|..+...+.+..+++.|..
T Consensus 794 et~~~~~~Ai~c~KkaV~L~-ann~~~WnaLGVlsg~gnva~aQHCfIks~~s-ep~~~~~W~NlgvL~l~n~d~E~A~~ 871 (1238)
T KOG1127|consen 794 ETMKDACTAIRCCKKAVSLC-ANNEGLWNALGVLSGIGNVACAQHCFIKSRFS-EPTCHCQWLNLGVLVLENQDFEHAEP 871 (1238)
T ss_pred CcchhHHHHHHHHHHHHHHh-hccHHHHHHHHHhhccchhhhhhhhhhhhhhc-cccchhheeccceeEEecccHHHhhH
Confidence 12345666776665431 234556665544311 3444444444333332 24456778888888888889999999
Q ss_pred HHHHHHHhhhcCCCccCHHHHHHHHHHHHhccCHHHHHHHHHHH--H--HCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 004480 346 IYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDM--L--SAGVTPNTITWSSLINACANAGLVEQAMHLF 421 (750)
Q Consensus 346 ~~~~~~~~~~~g~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m--~--~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~ 421 (750)
.|.....+ .+.|...|.......-..|+.-+...+|..- . ..|-.|+..-|-....-....|+.++-+...
T Consensus 872 af~~~qSL-----dP~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~te~h~~Ng~~e~~I~t~ 946 (1238)
T KOG1127|consen 872 AFSSVQSL-----DPLNLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCATEIHLQNGNIEESINTA 946 (1238)
T ss_pred HHHhhhhc-----CchhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHHHHHHHhccchHHHHHHh
Confidence 99888763 3445666777766677788888888888762 2 1233344333333333344556655444333
Q ss_pred HHHHH---------cCCCCCHHHHHHHHHHHHHhCChHHHHHHHHHH
Q 004480 422 EEMLQ---------AGCEPNSQCCNILLQACVEACQFDRAFRLFRSW 459 (750)
Q Consensus 422 ~~m~~---------~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~ 459 (750)
+.+-. .+.+-+...|.+........+....|.++..+.
T Consensus 947 ~ki~sAs~al~~yf~~~p~~~fAy~~~gstlEhL~ey~~a~ela~Rl 993 (1238)
T KOG1127|consen 947 RKISSASLALSYYFLGHPQLCFAYAANGSTLEHLEEYRAALELATRL 993 (1238)
T ss_pred hhhhhhHHHHHHHHhcCcchhHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 33221 133445667777777777777777776666553
No 110
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.38 E-value=0.0002 Score=73.06 Aligned_cols=249 Identities=13% Similarity=0.052 Sum_probs=183.6
Q ss_pred HHHHHHHHHcCCChHHHHHHhhhC----CCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 004480 194 EFRIVQLCVNKPDVNLAIRYACIV----PRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGIC 269 (750)
Q Consensus 194 ~~~l~~~~~~~~~~~~A~~~~~~~----~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 269 (750)
....+..+.+.|++.+|.-.|+.. |.+..+|.-|.......++-..|+..+.+..+..+ -|..+.-+|.-.|...
T Consensus 288 Pf~eG~~lm~nG~L~~A~LafEAAVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP-~NleaLmaLAVSytNe 366 (579)
T KOG1125|consen 288 PFKEGCNLMKNGDLSEAALAFEAAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLELDP-TNLEALMALAVSYTNE 366 (579)
T ss_pred hHHHHHHHHhcCCchHHHHHHHHHHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCC-ccHHHHHHHHHHHhhh
Confidence 445677777888888888877764 56668888888888888888889999998887432 3567778888888888
Q ss_pred CCHHHHHHHHHHHHhCCCCccHHHHHHHHH-----------hhc--CChHHHHHHHHHHHHc-CCCCCHhhHHHHHHHHH
Q 004480 270 GDYMKSRAIYEDLRSQNVTLNIYVFNSLMN-----------VNA--HDLKFTLEVYKNMQKL-GVMADMASYNILLKACC 335 (750)
Q Consensus 270 g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~-----------~~~--~~~~~a~~~~~~m~~~-g~~~~~~~~~~ll~~~~ 335 (750)
|.-.+|+..++.-+...++ |..+.. ... ..+....++|-++... +..+|+.++..|.-.|.
T Consensus 367 g~q~~Al~~L~~Wi~~~p~-----y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ 441 (579)
T KOG1125|consen 367 GLQNQALKMLDKWIRNKPK-----YVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYN 441 (579)
T ss_pred hhHHHHHHHHHHHHHhCcc-----chhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHh
Confidence 9888999988887654311 000100 001 1234556677666543 44588889999999999
Q ss_pred HcCChHHHHHHHHHHHHhhhcCCCcc-CHHHHHHHHHHHHhccCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCC
Q 004480 336 LAGNTVLAQEIYGEVKHLEAKGVLKL-DVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPN-TITWSSLINACANAGL 413 (750)
Q Consensus 336 ~~g~~~~A~~~~~~~~~~~~~g~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~ 413 (750)
-.|++++|...|+.... ++| |..+||.|...++...+.++|+..|.+.++. .|+ +.+...|.-+|...|.
T Consensus 442 ls~efdraiDcf~~AL~------v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqL--qP~yVR~RyNlgIS~mNlG~ 513 (579)
T KOG1125|consen 442 LSGEFDRAVDCFEAALQ------VKPNDYLLWNRLGATLANGNRSEEAISAYNRALQL--QPGYVRVRYNLGISCMNLGA 513 (579)
T ss_pred cchHHHHHHHHHHHHHh------cCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhc--CCCeeeeehhhhhhhhhhhh
Confidence 99999999999999987 555 4567999999999999999999999999986 555 4556667788999999
Q ss_pred HHHHHHHHHHHHH---c------CCCCCHHHHHHHHHHHHHhCChHHHHHHH
Q 004480 414 VEQAMHLFEEMLQ---A------GCEPNSQCCNILLQACVEACQFDRAFRLF 456 (750)
Q Consensus 414 ~~~a~~~~~~m~~---~------~~~p~~~~~~~ll~~~~~~g~~~~A~~~~ 456 (750)
+++|.+.|-..+. . +..++...|.+|=.++.-.++.|-+.+..
T Consensus 514 ykEA~~hlL~AL~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~~a~ 565 (579)
T KOG1125|consen 514 YKEAVKHLLEALSMQRKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQEAA 565 (579)
T ss_pred HHHHHHHHHHHHHhhhcccccccCCcchHHHHHHHHHHHHHcCCchHHHHhc
Confidence 9999998876553 2 11234457777766676677776554443
No 111
>PLN02789 farnesyltranstransferase
Probab=98.36 E-value=0.0002 Score=71.24 Aligned_cols=200 Identities=10% Similarity=-0.046 Sum_probs=106.8
Q ss_pred cCcHHHHHHHHHHHHhCCCCCcccccHHHHHHHHHcCC-ChHHHHHHhhh----CCCCcchHHHHHHHHHhcCCH--HHH
Q 004480 168 SGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKP-DVNLAIRYACI----VPRADILFCNFVREFGKKRDL--VSA 240 (750)
Q Consensus 168 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~A~~~~~~----~~~~~~~~~~l~~~~~~~g~~--~~A 240 (750)
.++.++|+.+++++++.. |.+...|..-..++...+ .+++++..++. -|.+..+|+.....+.+.|+. +++
T Consensus 50 ~e~serAL~lt~~aI~ln--P~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~~~~e 127 (320)
T PLN02789 50 DERSPRALDLTADVIRLN--PGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDAANKE 127 (320)
T ss_pred CCCCHHHHHHHHHHHHHC--chhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchhhHHH
Confidence 355567777777777644 666666665555555544 34555555433 244445555544444444442 455
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCccHHHHHHHHHhhcCChHHHHHHHHHHHHcCC
Q 004480 241 LRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKFTLEVYKNMQKLGV 320 (750)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~a~~~~~~m~~~g~ 320 (750)
+..++++.+... -|..+|+....++.+.|+++++++.++++++.++
T Consensus 128 l~~~~kal~~dp-kNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~--------------------------------- 173 (320)
T PLN02789 128 LEFTRKILSLDA-KNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDV--------------------------------- 173 (320)
T ss_pred HHHHHHHHHhCc-ccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCC---------------------------------
Confidence 666666665332 3556666666666666666666666666665532
Q ss_pred CCCHhhHHHHHHHHHHc---CC----hHHHHHHHHHHHHhhhcCCCccCHHHHHHHHHHHHhc----cCHHHHHHHHHHH
Q 004480 321 MADMASYNILLKACCLA---GN----TVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADA----KWWQMALKVKEDM 389 (750)
Q Consensus 321 ~~~~~~~~~ll~~~~~~---g~----~~~A~~~~~~~~~~~~~g~~~~~~~~~~~li~~~~~~----g~~~~a~~~~~~m 389 (750)
-|...|+.....+.+. |. .+++.....++... .+-|...|+-+...+... +...+|...+.+.
T Consensus 174 -~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~-----~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~ 247 (320)
T PLN02789 174 -RNNSAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAILA-----NPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEV 247 (320)
T ss_pred -CchhHHHHHHHHHHhccccccccccHHHHHHHHHHHHHh-----CCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHh
Confidence 2333333333322222 11 23444554444432 234555666666666652 3345566666666
Q ss_pred HHCCCCCCHHHHHHHHHHHHh
Q 004480 390 LSAGVTPNTITWSSLINACAN 410 (750)
Q Consensus 390 ~~~g~~p~~~~~~~li~~~~~ 410 (750)
...+ ..+......|++.|+.
T Consensus 248 ~~~~-~~s~~al~~l~d~~~~ 267 (320)
T PLN02789 248 LSKD-SNHVFALSDLLDLLCE 267 (320)
T ss_pred hccc-CCcHHHHHHHHHHHHh
Confidence 5543 2255666667776664
No 112
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.35 E-value=4.1e-05 Score=70.74 Aligned_cols=148 Identities=8% Similarity=0.038 Sum_probs=115.6
Q ss_pred HHHHHhhhhcCchhHHHHHHHHHHhcCCCccccccchhhhhhHHHHHHhhccCcHHHHHHHHHHHHhCCCCCcccccHHH
Q 004480 117 ASGIVKSIREGRIDCVVGVLKKLNELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFR 196 (750)
Q Consensus 117 ~~~~~~~~~~g~~~~A~~~l~~~~~~~~~p~~~~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ 196 (750)
.-.+..|.+.|++..+....+.+.. |.. .+...++.++++..++..+... |++...|..
T Consensus 20 ~~~~~~Y~~~g~~~~v~~~~~~~~~----~~~---------------~~~~~~~~~~~i~~l~~~L~~~--P~~~~~w~~ 78 (198)
T PRK10370 20 FLCVGSYLLSPKWQAVRAEYQRLAD----PLH---------------QFASQQTPEAQLQALQDKIRAN--PQNSEQWAL 78 (198)
T ss_pred HHHHHHHHHcchHHHHHHHHHHHhC----ccc---------------cccCchhHHHHHHHHHHHHHHC--CCCHHHHHH
Confidence 3345568899999987666533321 110 0111577788898999888866 999999999
Q ss_pred HHHHHHcCCChHHHHHHhhhC----CCCcchHHHHHHH-HHhcCC--HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 004480 197 IVQLCVNKPDVNLAIRYACIV----PRADILFCNFVRE-FGKKRD--LVSALRAYDASKKHLSSPNMYICRTIIDVCGIC 269 (750)
Q Consensus 197 l~~~~~~~~~~~~A~~~~~~~----~~~~~~~~~l~~~-~~~~g~--~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 269 (750)
++..+...|++++|...++.. |++..++..+..+ +.+.|+ .++|.+++++..+.++ -+..++..+...+.+.
T Consensus 79 Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP-~~~~al~~LA~~~~~~ 157 (198)
T PRK10370 79 LGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDA-NEVTALMLLASDAFMQ 157 (198)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCC-CChhHHHHHHHHHHHc
Confidence 999999999999999988774 7777888888886 467777 5999999999998644 3677888888899999
Q ss_pred CCHHHHHHHHHHHHhCC
Q 004480 270 GDYMKSRAIYEDLRSQN 286 (750)
Q Consensus 270 g~~~~A~~~~~~m~~~g 286 (750)
|++++|+..|+.+.+..
T Consensus 158 g~~~~Ai~~~~~aL~l~ 174 (198)
T PRK10370 158 ADYAQAIELWQKVLDLN 174 (198)
T ss_pred CCHHHHHHHHHHHHhhC
Confidence 99999999999998764
No 113
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.31 E-value=5.8e-05 Score=84.17 Aligned_cols=221 Identities=11% Similarity=0.045 Sum_probs=150.2
Q ss_pred cccccchhhccccCCcchhhhHHHHHHHHhhcCChHHHHHHHHHHHHhcCChhhHHhhhhHHHHHHHHHhhhhcCchhHH
Q 004480 53 HSSQTALLSTVRRDLSSRNDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCV 132 (750)
Q Consensus 53 ~~~~~~~~~~l~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A 132 (750)
|.++.+|.+.+..+|++ ...|...+...++.++.++|.+++++++..= ++..-..- ..++..++-.-..-|.-+..
T Consensus 1441 pesaeDferlvrssPNS-Si~WI~YMaf~LelsEiekAR~iaerAL~tI-N~REeeEK--LNiWiA~lNlEn~yG~eesl 1516 (1710)
T KOG1070|consen 1441 PESAEDFERLVRSSPNS-SILWIRYMAFHLELSEIEKARKIAERALKTI-NFREEEEK--LNIWIAYLNLENAYGTEESL 1516 (1710)
T ss_pred CcCHHHHHHHHhcCCCc-chHHHHHHHHHhhhhhhHHHHHHHHHHhhhC-CcchhHHH--HHHHHHHHhHHHhhCcHHHH
Confidence 33445577778899999 8889999999999999999999999988651 12111110 11111122222334677888
Q ss_pred HHHHHHHHhcCCCccccccchhhhhhHHHHHHhhccCcHHHHHHHHHHHHhCCCCCcccccHHHHHHHHHcCCChHHHHH
Q 004480 133 VGVLKKLNELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIR 212 (750)
Q Consensus 133 ~~~l~~~~~~~~~p~~~~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 212 (750)
.++|+++-+. ...+..+...+.-|...+.+++|.++|+.|.+.-- .....|...+..+.++++-+.|..
T Consensus 1517 ~kVFeRAcqy---------cd~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~--q~~~vW~~y~~fLl~~ne~~aa~~ 1585 (1710)
T KOG1070|consen 1517 KKVFERACQY---------CDAYTVHLKLLGIYEKSEKNDEADELLRLMLKKFG--QTRKVWIMYADFLLRQNEAEAARE 1585 (1710)
T ss_pred HHHHHHHHHh---------cchHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhc--chhhHHHHHHHHHhcccHHHHHHH
Confidence 8999998873 23455566666667778999999999999987542 445567777777777777777766
Q ss_pred Hhhh----CCC--CcchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 004480 213 YACI----VPR--ADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQN 286 (750)
Q Consensus 213 ~~~~----~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 286 (750)
++.+ +|. ........+..-.+.|+.+.+..+|+......+ .-...|+..++.=.+.|+.+.+..+|++....+
T Consensus 1586 lL~rAL~~lPk~eHv~~IskfAqLEFk~GDaeRGRtlfEgll~ayP-KRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~ 1664 (1710)
T KOG1070|consen 1586 LLKRALKSLPKQEHVEFISKFAQLEFKYGDAERGRTLFEGLLSAYP-KRTDLWSVYIDMEIKHGDIKYVRDLFERVIELK 1664 (1710)
T ss_pred HHHHHHhhcchhhhHHHHHHHHHHHhhcCCchhhHHHHHHHHhhCc-cchhHHHHHHHHHHccCCHHHHHHHHHHHHhcC
Confidence 6554 344 224445556666677777887778877766432 245677777777777777777888887777766
Q ss_pred CCc
Q 004480 287 VTL 289 (750)
Q Consensus 287 ~~~ 289 (750)
+.|
T Consensus 1665 l~~ 1667 (1710)
T KOG1070|consen 1665 LSI 1667 (1710)
T ss_pred CCh
Confidence 544
No 114
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.31 E-value=8.6e-05 Score=77.63 Aligned_cols=115 Identities=17% Similarity=0.175 Sum_probs=55.6
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 004480 549 ISWTILIDACGGSGNVEGALQILKIMREDGMSPD-VVAYTTAIKVCVRSKRLKQAFSLFEEMKHYQIQPNLVTYITLLRA 627 (750)
Q Consensus 549 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~ 627 (750)
.+|-.+..+..+.+++..|.+.|..-.. +.|| ...||.+-.+|.+.|+-.+|...+++..+.+ .-+...|...+..
T Consensus 520 ~~wf~~G~~ALqlek~q~av~aF~rcvt--L~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn-~~~w~iWENymlv 596 (777)
T KOG1128|consen 520 GTWFGLGCAALQLEKEQAAVKAFHRCVT--LEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN-YQHWQIWENYMLV 596 (777)
T ss_pred hHHHhccHHHHHHhhhHHHHHHHHHHhh--cCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC-CCCCeeeechhhh
Confidence 3444444445555555555555555544 2443 3455555555555555555555555555544 3334444444444
Q ss_pred HHhcCCHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 004480 628 RSRYGSLHEVQQCLAVYQDMWKAGYKANDTYLKELIEEWCE 668 (750)
Q Consensus 628 ~~~~g~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~ 668 (750)
....|.++++.+|..-...|.+.+- |......++....+
T Consensus 597 svdvge~eda~~A~~rll~~~~~~~--d~~vl~~iv~~~~~ 635 (777)
T KOG1128|consen 597 SVDVGEFEDAIKAYHRLLDLRKKYK--DDEVLLIIVRTVLE 635 (777)
T ss_pred hhhcccHHHHHHHHHHHHHhhhhcc--cchhhHHHHHHHHh
Confidence 4555555554443333333333332 33333444444333
No 115
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.26 E-value=0.0002 Score=65.90 Aligned_cols=167 Identities=11% Similarity=-0.003 Sum_probs=116.7
Q ss_pred CCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCccHHHHHH
Q 004480 217 VPRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNS 296 (750)
Q Consensus 217 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ 296 (750)
-|.+..+ ..+...+...|+-+....+....... ...|....+..+....+.|++.+|...|++.....
T Consensus 63 ~p~d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~-~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~---------- 130 (257)
T COG5010 63 NPEDLSI-AKLATALYLRGDADSSLAVLQKSAIA-YPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA---------- 130 (257)
T ss_pred CcchHHH-HHHHHHHHhcccccchHHHHhhhhcc-CcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC----------
Confidence 3444445 55666666667777766666654432 22345566667777777778877777777766432
Q ss_pred HHHhhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHHcCChHHHHHHHHHHHHhhhcCCCccCHHHHHHHHHHHHhc
Q 004480 297 LMNVNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADA 376 (750)
Q Consensus 297 ll~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~g~~~~~~~~~~~li~~~~~~ 376 (750)
++|...|+.+.-+|.+.|+.++|..-|.+..++ ..-+...+|.+.-.|.-.
T Consensus 131 ------------------------p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L-----~~~~p~~~nNlgms~~L~ 181 (257)
T COG5010 131 ------------------------PTDWEAWNLLGAALDQLGRFDEARRAYRQALEL-----APNEPSIANNLGMSLLLR 181 (257)
T ss_pred ------------------------CCChhhhhHHHHHHHHccChhHHHHHHHHHHHh-----ccCCchhhhhHHHHHHHc
Confidence 677888888888888888888888888888774 233455677777778888
Q ss_pred cCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 004480 377 KWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEML 425 (750)
Q Consensus 377 g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 425 (750)
|+++.|..++......+. -|...-..+.......|++++|..+...-.
T Consensus 182 gd~~~A~~lll~a~l~~~-ad~~v~~NLAl~~~~~g~~~~A~~i~~~e~ 229 (257)
T COG5010 182 GDLEDAETLLLPAYLSPA-ADSRVRQNLALVVGLQGDFREAEDIAVQEL 229 (257)
T ss_pred CCHHHHHHHHHHHHhCCC-CchHHHHHHHHHHhhcCChHHHHhhccccc
Confidence 888888888888776643 366667777777788888888887776554
No 116
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.25 E-value=0.00044 Score=77.51 Aligned_cols=227 Identities=14% Similarity=0.072 Sum_probs=151.2
Q ss_pred hCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhCC-CC---CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCccH
Q 004480 216 IVPRADILFCNFVREFGKKRDLVSALRAYDASKKHL-SS---PNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNI 291 (750)
Q Consensus 216 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~ 291 (750)
.-|.+...|-..|......++.++|++++++.+..- +. --...|.++++.-...|.-+...++|+++.+. -|.
T Consensus 1453 ssPNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqy---cd~ 1529 (1710)
T KOG1070|consen 1453 SSPNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQY---CDA 1529 (1710)
T ss_pred cCCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHh---cch
Confidence 345666677777777777777777777777766531 11 01335666666666667777777777777654 232
Q ss_pred H-HHHHHHHhhc--CChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHHcCChHHHHHHHHHHHHhhhcCCCccC---HHH
Q 004480 292 Y-VFNSLMNVNA--HDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLD---VFT 365 (750)
Q Consensus 292 ~-~~~~ll~~~~--~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~g~~~~~---~~~ 365 (750)
. .|..|...|. +..++|-++|+.|.+.- .-....|...+..+.+.++-+.|..++.+..+. -|- ...
T Consensus 1530 ~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF-~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~------lPk~eHv~~ 1602 (1710)
T KOG1070|consen 1530 YTVHLKLLGIYEKSEKNDEADELLRLMLKKF-GQTRKVWIMYADFLLRQNEAEAARELLKRALKS------LPKQEHVEF 1602 (1710)
T ss_pred HHHHHHHHHHHHHhhcchhHHHHHHHHHHHh-cchhhHHHHHHHHHhcccHHHHHHHHHHHHHhh------cchhhhHHH
Confidence 2 2344444443 46777777777776641 246677888888898988888999998887762 233 233
Q ss_pred HHHHHHHHHhccCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH--HHHHHHHHHH
Q 004480 366 YSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNS--QCCNILLQAC 443 (750)
Q Consensus 366 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~--~~~~~ll~~~ 443 (750)
..-.+..-.+.|+.+.+..+|+..+...++ -...|+..|+.-.+.|+.+.+..+|++....++.|-. ..|.-.+..=
T Consensus 1603 IskfAqLEFk~GDaeRGRtlfEgll~ayPK-RtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyE 1681 (1710)
T KOG1070|consen 1603 ISKFAQLEFKYGDAERGRTLFEGLLSAYPK-RTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYE 1681 (1710)
T ss_pred HHHHHHHHhhcCCchhhHHHHHHHHhhCcc-chhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHH
Confidence 344444556789999999999988876433 5677999999999999999999999999988776633 3455555544
Q ss_pred HHhCChHHHH
Q 004480 444 VEACQFDRAF 453 (750)
Q Consensus 444 ~~~g~~~~A~ 453 (750)
-+.|+-..+.
T Consensus 1682 k~~Gde~~vE 1691 (1710)
T KOG1070|consen 1682 KSHGDEKNVE 1691 (1710)
T ss_pred HhcCchhhHH
Confidence 4445544433
No 117
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=98.24 E-value=3.2e-05 Score=60.91 Aligned_cols=85 Identities=21% Similarity=0.389 Sum_probs=66.5
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHhcCC----H-HHHHHHHHHHHHHHHcCCCCCHHHHH
Q 004480 587 TTAIKVCVRSKRLKQAFSLFEEMKHYQI-QPNLVTYITLLRARSRYGS----L-HEVQQCLAVYQDMWKAGYKANDTYLK 660 (750)
Q Consensus 587 ~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~~t~~~li~~~~~~g~----~-~~~~~a~~~~~~m~~~g~~p~~~~~~ 660 (750)
...|..|...|++.....+|+.+++.|+ .|+..+|+.++.+.++..- . .++-+++.+|+.|...+++|+..||+
T Consensus 29 i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYn 108 (120)
T PF08579_consen 29 IDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYN 108 (120)
T ss_pred HHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHH
Confidence 4455666666888888888888888888 7888888888888776532 1 13556788999999999999999999
Q ss_pred HHHHHHHhhhh
Q 004480 661 ELIEEWCEGVI 671 (750)
Q Consensus 661 ~li~~~~~~~~ 671 (750)
.++..+++|.+
T Consensus 109 ivl~~LlkgSi 119 (120)
T PF08579_consen 109 IVLGSLLKGSI 119 (120)
T ss_pred HHHHHHHHhhc
Confidence 99999988754
No 118
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.23 E-value=0.00031 Score=78.00 Aligned_cols=236 Identities=9% Similarity=0.053 Sum_probs=120.4
Q ss_pred CCcchhhhHHHHHHHHhhcCChHHHHHHHHHHHHhcCChhhHHhhhhHHHHHHHHHhhhhcCchhHHHHHHHHHHhcCCC
Q 004480 66 DLSSRNDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVA 145 (750)
Q Consensus 66 ~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~ 145 (750)
+|+. ..++..|+..+...|++++|.++.+..++. .|+.....+..+.+ +.+.+++.++.-+ .+... .
T Consensus 27 ~p~n-~~a~~~Li~~~~~~~~~deai~i~~~~l~~--~P~~i~~yy~~G~l------~~q~~~~~~~~lv--~~l~~--~ 93 (906)
T PRK14720 27 SLSK-FKELDDLIDAYKSENLTDEAKDICEEHLKE--HKKSISALYISGIL------SLSRRPLNDSNLL--NLIDS--F 93 (906)
T ss_pred Ccch-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CCcceehHHHHHHH------HHhhcchhhhhhh--hhhhh--c
Confidence 4555 778888888888888888888888877777 55555444443333 5666666665555 33321 1
Q ss_pred ccccccchhhhhhHHHHHHhhccCcHHHHHHHHHHHHhCCCCCcccccHHHHHHHHHcCCChHHHHHHhhhCCCCcchHH
Q 004480 146 PLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRADILFC 225 (750)
Q Consensus 146 p~~~~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~ 225 (750)
+. ..++.-...++..+... + .+..++.
T Consensus 94 ~~--------------------~~~~~~ve~~~~~i~~~---~------------------------------~~k~Al~ 120 (906)
T PRK14720 94 SQ--------------------NLKWAIVEHICDKILLY---G------------------------------ENKLALR 120 (906)
T ss_pred cc--------------------ccchhHHHHHHHHHHhh---h------------------------------hhhHHHH
Confidence 10 11221111112222221 1 1223444
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-----ccHHHHHHHHHh
Q 004480 226 NFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVT-----LNIYVFNSLMNV 300 (750)
Q Consensus 226 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-----~~~~~~~~ll~~ 300 (750)
.++.+|-+.|+.++|..+|+++.+.. .-|+.+.|.+...|+.. ++++|.+++.+.+..-+. .-...|.-++..
T Consensus 121 ~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~~i~~kq~~~~~e~W~k~~~~ 198 (906)
T PRK14720 121 TLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKEKAITYLKKAIYRFIKKKQYVGIEEIWSKLVHY 198 (906)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHhc
Confidence 45555555555555555555555533 12444555555555555 555555555544433110 001112222222
Q ss_pred hcCChHHHHHHHHHHHHc-CCCCCHhhHHHHHHHHHHcCChHHHHHHHHHHHHhhhcCCCccCHHHHHHHHHHHH
Q 004480 301 NAHDLKFTLEVYKNMQKL-GVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFA 374 (750)
Q Consensus 301 ~~~~~~~a~~~~~~m~~~-g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~g~~~~~~~~~~~li~~~~ 374 (750)
-..+++.-..+.+.+... |..--..++-.+-..|-..++++++..+++.+.+.. +-|.....-++.+|.
T Consensus 199 ~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~-----~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 199 NSDDFDFFLRIERKVLGHREFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHD-----NKNNKAREELIRFYK 268 (906)
T ss_pred CcccchHHHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcC-----CcchhhHHHHHHHHH
Confidence 223444445555555443 333344555566667777777888888888777631 234455666666554
No 119
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.23 E-value=0.00045 Score=72.44 Aligned_cols=218 Identities=13% Similarity=0.051 Sum_probs=144.5
Q ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCccHHHHHHHHHhh
Q 004480 222 ILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVN 301 (750)
Q Consensus 222 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~ 301 (750)
..--.+...+...|-...|+.+|++.. .|.-++.+|...|+..+|..+..+..++ +||...|..+....
T Consensus 399 q~q~~laell~slGitksAl~I~Erle---------mw~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc~LGDv~ 467 (777)
T KOG1128|consen 399 QLQRLLAELLLSLGITKSALVIFERLE---------MWDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLYCLLGDVL 467 (777)
T ss_pred hHHHHHHHHHHHcchHHHHHHHHHhHH---------HHHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhHHHhhhhc
Confidence 334445666667777777777776643 3555666777777777777777666663 56666776666654
Q ss_pred cC--ChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHHcCChHHHHHHHHHHHHhhhcCCCccCHHHHHHHHHHHHhccCH
Q 004480 302 AH--DLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWW 379 (750)
Q Consensus 302 ~~--~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~g~~~~~~~~~~~li~~~~~~g~~ 379 (750)
.. -+++|.++++..... .-..+.....+.++++++.+.|+.-.++ -+.-..+|-.+..+..+.+++
T Consensus 468 ~d~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~-----nplq~~~wf~~G~~ALqlek~ 535 (777)
T KOG1128|consen 468 HDPSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEI-----NPLQLGTWFGLGCAALQLEKE 535 (777)
T ss_pred cChHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhc-----CccchhHHHhccHHHHHHhhh
Confidence 43 356666666654332 1111222233467788888888776653 233456777777777788888
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCChHHHHHHHHHH
Q 004480 380 QMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSW 459 (750)
Q Consensus 380 ~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~ 459 (750)
+.|.+.|..-.... +-+...||.+-.+|.+.++..+|...+.+..+.. .-+...|-..+....+.|.+++|.+.++++
T Consensus 536 q~av~aF~rcvtL~-Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn-~~~w~iWENymlvsvdvge~eda~~A~~rl 613 (777)
T KOG1128|consen 536 QAAVKAFHRCVTLE-PDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN-YQHWQIWENYMLVSVDVGEFEDAIKAYHRL 613 (777)
T ss_pred HHHHHHHHHHhhcC-CCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC-CCCCeeeechhhhhhhcccHHHHHHHHHHH
Confidence 88888887776642 2246678888888888888888888888888776 444555666666677888888888888877
Q ss_pred hhccc
Q 004480 460 TLSKT 464 (750)
Q Consensus 460 ~~~~~ 464 (750)
.....
T Consensus 614 l~~~~ 618 (777)
T KOG1128|consen 614 LDLRK 618 (777)
T ss_pred HHhhh
Confidence 76543
No 120
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.23 E-value=8.9e-05 Score=81.48 Aligned_cols=190 Identities=8% Similarity=-0.035 Sum_probs=115.1
Q ss_pred chhhccccCCcc----hhhhHHHHHHHHhhcCChHHHHHHHHHHHHhcCChhhHHhhhhHHHHHHHHHhhhhcCchhHHH
Q 004480 58 ALLSTVRRDLSS----RNDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVV 133 (750)
Q Consensus 58 ~~~~~l~~~p~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~ 133 (750)
..++..-.+|.. .......+-+.+.+.|++..+.+.+-++++.-. .++.....+-.+.....+.|++++|+
T Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~La~i~~~~g~~~ea~ 106 (694)
T PRK15179 32 DLLEAALAEPGESEEAGRELLQQARQVLERHAAVHKPAAALPELLDYVR-----RYPHTELFQVLVARALEAAHRSDEGL 106 (694)
T ss_pred hHHHHHhcCcccchhHHHHHHHHHHHHHHHhhhhcchHhhHHHHHHHHH-----hccccHHHHHHHHHHHHHcCCcHHHH
Confidence 344555555533 233444555566666776666555555544310 01112344445566677888888888
Q ss_pred HHHHHHHhcCCCccccccchhhhhhHHHHHHhhccCcHHHHHHHHHHHHhCCCCCcccccHHHHHHHHHcCCChHHHHHH
Q 004480 134 GVLKKLNELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRY 213 (750)
Q Consensus 134 ~~l~~~~~~~~~p~~~~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 213 (750)
.+|+.+.+ +.|+.. ...+.....+.+.+++++|+..+++++... |++......++.++.+.|++++|..+
T Consensus 107 ~~l~~~~~--~~Pd~~------~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~--p~~~~~~~~~a~~l~~~g~~~~A~~~ 176 (694)
T PRK15179 107 AVWRGIHQ--RFPDSS------EAFILMLRGVKRQQGIEAGRAEIELYFSGG--SSSAREILLEAKSWDEIGQSEQADAC 176 (694)
T ss_pred HHHHHHHh--hCCCcH------HHHHHHHHHHHHhccHHHHHHHHHHHhhcC--CCCHHHHHHHHHHHHHhcchHHHHHH
Confidence 88888887 566544 222333334445788888888888888755 77777777777777777777777777
Q ss_pred hhhC----CCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 004480 214 ACIV----PRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTII 263 (750)
Q Consensus 214 ~~~~----~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li 263 (750)
|+++ |.+..++.++...+-..|+.++|...|+...+.. .+....|+..+
T Consensus 177 y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~-~~~~~~~~~~~ 229 (694)
T PRK15179 177 FERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAI-GDGARKLTRRL 229 (694)
T ss_pred HHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh-CcchHHHHHHH
Confidence 6664 3444666777777777777777777777766532 23344444433
No 121
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.21 E-value=0.00013 Score=80.26 Aligned_cols=136 Identities=3% Similarity=-0.114 Sum_probs=110.8
Q ss_pred HHHHHHhhccCcHHHHHHHHHHHHhCCCCCcccccHHHHHHHHHcCCChHHHHHHhhh----CCCCcchHHHHHHHHHhc
Q 004480 159 KNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACI----VPRADILFCNFVREFGKK 234 (750)
Q Consensus 159 ~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~----~~~~~~~~~~l~~~~~~~ 234 (750)
...+....+.|.+++|..+++.+.+.. |+....+..++..+.+.+++++|+..+++ .|.+....+.+...+.+.
T Consensus 90 ~~La~i~~~~g~~~ea~~~l~~~~~~~--Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~~~~~~~a~~l~~~ 167 (694)
T PRK15179 90 VLVARALEAAHRSDEGLAVWRGIHQRF--PDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSAREILLEAKSWDEI 167 (694)
T ss_pred HHHHHHHHHcCCcHHHHHHHHHHHhhC--CCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHh
Confidence 333334445899999999999999844 99999999999999999999999887666 477778899999999999
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCccHHHHHHHH
Q 004480 235 RDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLM 298 (750)
Q Consensus 235 g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll 298 (750)
|++++|..+|+++...+. -+..++..+..++...|+.++|...|+...+.- .+...-|+..+
T Consensus 168 g~~~~A~~~y~~~~~~~p-~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~-~~~~~~~~~~~ 229 (694)
T PRK15179 168 GQSEQADACFERLSRQHP-EFENGYVGWAQSLTRRGALWRARDVLQAGLDAI-GDGARKLTRRL 229 (694)
T ss_pred cchHHHHHHHHHHHhcCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh-CcchHHHHHHH
Confidence 999999999999998332 347788899999999999999999999987652 23334444433
No 122
>PLN02789 farnesyltranstransferase
Probab=98.14 E-value=0.004 Score=62.09 Aligned_cols=207 Identities=9% Similarity=0.019 Sum_probs=121.4
Q ss_pred HHHHHHcCChHHHHHHHHHHHHhhhcCCCccC-HHHHHHHHHHHHhcc-CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 004480 331 LKACCLAGNTVLAQEIYGEVKHLEAKGVLKLD-VFTYSTIVKVFADAK-WWQMALKVKEDMLSAGVTPNTITWSSLINAC 408 (750)
Q Consensus 331 l~~~~~~g~~~~A~~~~~~~~~~~~~g~~~~~-~~~~~~li~~~~~~g-~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~ 408 (750)
-..+...++.++|+.+..++..+ .|+ ..+|+.--.++...| ++++++..++++.....+ +..+|+.....+
T Consensus 44 ra~l~~~e~serAL~lt~~aI~l------nP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npk-nyqaW~~R~~~l 116 (320)
T PLN02789 44 RAVYASDERSPRALDLTADVIRL------NPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPK-NYQIWHHRRWLA 116 (320)
T ss_pred HHHHHcCCCCHHHHHHHHHHHHH------CchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCc-chHHhHHHHHHH
Confidence 33444456777777777777763 333 334655555566666 567888888887766433 455566555555
Q ss_pred HhcCCH--HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCChHHHHHHHHHHhhcccccccCCCCCCchhhhhhhhhhh
Q 004480 409 ANAGLV--EQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKD 486 (750)
Q Consensus 409 ~~~g~~--~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 486 (750)
.+.|.. ++++.+++++.+.. +-+..+|+....++.+.|+++++++.++++...+.
T Consensus 117 ~~l~~~~~~~el~~~~kal~~d-pkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~---------------------- 173 (320)
T PLN02789 117 EKLGPDAANKELEFTRKILSLD-AKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDV---------------------- 173 (320)
T ss_pred HHcCchhhHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCC----------------------
Confidence 555552 56777777777654 44667777777777777888888888887765432
Q ss_pred cccccCCCCccCCCccccccccCCCCccHHHHHHHHHHHHh---------cHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 004480 487 KQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCT---------DYYRVKALMNEMRTVGLSPNHISWTILIDA 557 (750)
Q Consensus 487 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~---------~~~~a~~l~~~m~~~~~~p~~~~~~~li~~ 557 (750)
-|...|+..-..+.+ ..++......+++... +-|...|+.+...
T Consensus 174 --------------------------~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~~-P~N~SaW~Yl~~l 226 (320)
T PLN02789 174 --------------------------RNNSAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAILAN-PRNESPWRYLRGL 226 (320)
T ss_pred --------------------------CchhHHHHHHHHHHhccccccccccHHHHHHHHHHHHHhC-CCCcCHHHHHHHH
Confidence 233333332222111 1234455555555532 2245567777777
Q ss_pred HHcC----CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q 004480 558 CGGS----GNVEGALQILKIMREDGMSPDVVAYTTAIKVCVR 595 (750)
Q Consensus 558 ~~~~----g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~ 595 (750)
+... ++..+|...+.+..+.+ ..+......|++.|+.
T Consensus 227 l~~~~~~l~~~~~~~~~~~~~~~~~-~~s~~al~~l~d~~~~ 267 (320)
T PLN02789 227 FKDDKEALVSDPEVSSVCLEVLSKD-SNHVFALSDLLDLLCE 267 (320)
T ss_pred HhcCCcccccchhHHHHHHHhhccc-CCcHHHHHHHHHHHHh
Confidence 6663 33455777777665532 2245566666666664
No 123
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.14 E-value=4.1e-06 Score=52.63 Aligned_cols=33 Identities=33% Similarity=0.583 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC
Q 004480 585 AYTTAIKVCVRSKRLKQAFSLFEEMKHYQIQPN 617 (750)
Q Consensus 585 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 617 (750)
+||++|.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 567777777777777777777777777777766
No 124
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.14 E-value=0.00029 Score=68.04 Aligned_cols=187 Identities=11% Similarity=-0.005 Sum_probs=105.9
Q ss_pred cchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-CC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCccHHHHHHHH
Q 004480 221 DILFCNFVREFGKKRDLVSALRAYDASKKHLSS-PN-MYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLM 298 (750)
Q Consensus 221 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll 298 (750)
...+..++..+...|++++|...|+++....+. |. ..++..+..++.+.|++++|...|+++.+.........+
T Consensus 33 ~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~---- 108 (235)
T TIGR03302 33 AEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADY---- 108 (235)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHH----
Confidence 356777888888999999999999998875432 11 246777888889999999999999998865321111000
Q ss_pred HhhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHH--------HHcCChHHHHHHHHHHHHhhhcCCCccCHH-HHHHH
Q 004480 299 NVNAHDLKFTLEVYKNMQKLGVMADMASYNILLKAC--------CLAGNTVLAQEIYGEVKHLEAKGVLKLDVF-TYSTI 369 (750)
Q Consensus 299 ~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~--------~~~g~~~~A~~~~~~~~~~~~~g~~~~~~~-~~~~l 369 (750)
++..+...+ ...|+.++|.+.|+.+... .|+.. .+..+
T Consensus 109 ---------------------------a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~------~p~~~~~~~a~ 155 (235)
T TIGR03302 109 ---------------------------AYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR------YPNSEYAPDAK 155 (235)
T ss_pred ---------------------------HHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH------CCCChhHHHHH
Confidence 111111111 1235677777777777652 23322 22111
Q ss_pred HHHHHhccCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHHHHhC
Q 004480 370 VKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGC--EPNSQCCNILLQACVEAC 447 (750)
Q Consensus 370 i~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~--~p~~~~~~~ll~~~~~~g 447 (750)
... .. .... . ......+...+.+.|++++|...+++..+..- +.....+..+..++.+.|
T Consensus 156 ~~~-~~---~~~~------~--------~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg 217 (235)
T TIGR03302 156 KRM-DY---LRNR------L--------AGKELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLG 217 (235)
T ss_pred HHH-HH---HHHH------H--------HHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcC
Confidence 110 00 0000 0 00112344556666777777777777665421 123456666667777777
Q ss_pred ChHHHHHHHHHHhhc
Q 004480 448 QFDRAFRLFRSWTLS 462 (750)
Q Consensus 448 ~~~~A~~~~~~~~~~ 462 (750)
++++|...++.+...
T Consensus 218 ~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 218 LKDLAQDAAAVLGAN 232 (235)
T ss_pred CHHHHHHHHHHHHhh
Confidence 777777766665543
No 125
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.12 E-value=0.0006 Score=62.26 Aligned_cols=184 Identities=14% Similarity=0.059 Sum_probs=125.5
Q ss_pred cCChHHHHHHHHHHHHh---c-CChhhHHhhhhHHHHHHHHHhhhhcCchhHHHHHHHHHHhcCCCccccccchhhhhhH
Q 004480 84 DGRLEEFAMIVESVVVS---E-GNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLELFDGSGFKLLK 159 (750)
Q Consensus 84 ~g~~~~A~~~~~~~~~~---~-~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~p~~~~~~~~~~~l~ 159 (750)
..+.++..++..+++.- + ..++. +.++..++.+....|+.+.|..++.++..+ . |...-...+..+++
T Consensus 25 ~rnseevv~l~~~~~~~~k~~~~g~e~------w~l~EqV~IAAld~~~~~lAq~C~~~L~~~-f-p~S~RV~~lkam~l 96 (289)
T KOG3060|consen 25 VRNSEEVVQLGSEVLNYSKSGALGDEI------WTLYEQVFIAALDTGRDDLAQKCINQLRDR-F-PGSKRVGKLKAMLL 96 (289)
T ss_pred ccCHHHHHHHHHHHHHHhhhcccCchH------HHHHHHHHHHHHHhcchHHHHHHHHHHHHh-C-CCChhHHHHHHHHH
Confidence 34566777777776644 1 22332 344556667778899999999999998874 3 54432223333333
Q ss_pred HHHHHhhccCcHHHHHHHHHHHHhCCCCCcccccHHHHHHHHHcCCChHHHHHH----hhhCCCCcchHHHHHHHHHhcC
Q 004480 160 NECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRY----ACIVPRADILFCNFVREFGKKR 235 (750)
Q Consensus 160 ~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~----~~~~~~~~~~~~~l~~~~~~~g 235 (750)
. ..|.+++|+++|+.++..+ |.+...+..-+...-.+|+..+|++. .+.|+.+..+|.-+...|...|
T Consensus 97 E------a~~~~~~A~e~y~~lL~dd--pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~ 168 (289)
T KOG3060|consen 97 E------ATGNYKEAIEYYESLLEDD--PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEG 168 (289)
T ss_pred H------HhhchhhHHHHHHHHhccC--cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHh
Confidence 3 2799999999999999866 88877777777777777877777764 5667888888888888888888
Q ss_pred CHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhC
Q 004480 236 DLVSALRAYDASKKHLSSP-NMYICRTIIDVCGICG---DYMKSRAIYEDLRSQ 285 (750)
Q Consensus 236 ~~~~A~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g---~~~~A~~~~~~m~~~ 285 (750)
+++.|.-.++++.-. .| +...+..+.+.+--.| +++.|.+.|.+..+.
T Consensus 169 ~f~kA~fClEE~ll~--~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl 220 (289)
T KOG3060|consen 169 DFEKAAFCLEELLLI--QPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKL 220 (289)
T ss_pred HHHHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHh
Confidence 888888888888763 34 3444445555433332 455666777766654
No 126
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.12 E-value=0.0024 Score=71.15 Aligned_cols=168 Identities=10% Similarity=0.091 Sum_probs=98.4
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-CccHHHHHHHHHhhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHH
Q 004480 255 NMYICRTIIDVCGICGDYMKSRAIYEDLRSQNV-TLNIYVFNSLMNVNAHDLKFTLEVYKNMQKLGVMADMASYNILLKA 333 (750)
Q Consensus 255 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~~~~~~~~~ll~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~ 333 (750)
+...+..|+..+...+++++|.++.+...+... .+....+..++....++.+++..+ .++..
T Consensus 30 n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv-----------------~~l~~ 92 (906)
T PRK14720 30 KFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL-----------------NLIDS 92 (906)
T ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh-----------------hhhhh
Confidence 455667777777677777777777765554421 122333333333222322222111 33333
Q ss_pred HHHcCChHHHHHHHHHHHHhhhcCCCccCHHHHHHHHHHHHhccCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 004480 334 CCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGL 413 (750)
Q Consensus 334 ~~~~g~~~~A~~~~~~~~~~~~~g~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~ 413 (750)
.....++.-..-+...+.. ..-+...+-.+..+|-+.|+.+++..+|+++++.. +-|+.+.|.+...|+.. +
T Consensus 93 ~~~~~~~~~ve~~~~~i~~------~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-d 164 (906)
T PRK14720 93 FSQNLKWAIVEHICDKILL------YGENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-D 164 (906)
T ss_pred cccccchhHHHHHHHHHHh------hhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-h
Confidence 4344444333444444443 23345567777777778888888888888887776 33677777777777777 7
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCChHHHHHHHHHHhhc
Q 004480 414 VEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLS 462 (750)
Q Consensus 414 ~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~ 462 (750)
+++|.+++.+..+. +...+++..+.+++.++...
T Consensus 165 L~KA~~m~~KAV~~---------------~i~~kq~~~~~e~W~k~~~~ 198 (906)
T PRK14720 165 KEKAITYLKKAIYR---------------FIKKKQYVGIEEIWSKLVHY 198 (906)
T ss_pred HHHHHHHHHHHHHH---------------HHhhhcchHHHHHHHHHHhc
Confidence 88888777777553 55556777777777766543
No 127
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.11 E-value=3.8e-05 Score=66.98 Aligned_cols=116 Identities=5% Similarity=-0.099 Sum_probs=69.5
Q ss_pred ccccCCcchhhhHHHHHHHHhhcCChHHHHHHHHHHHHhcCChhhHHhhhhHHHHHHHHHhhhhcCchhHHHHHHHHHHh
Q 004480 62 TVRRDLSSRNDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNE 141 (750)
Q Consensus 62 ~l~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~ 141 (750)
.++.+|+. +..++..+...|++++|...|+.++.. +|...... ..+...+...|++++|+..|+++.+
T Consensus 19 al~~~p~~----~~~~g~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~------~~lg~~~~~~g~~~~A~~~y~~Al~ 86 (144)
T PRK15359 19 LLSVDPET----VYASGYASWQEGDYSRAVIDFSWLVMA--QPWSWRAH------IALAGTWMMLKEYTTAINFYGHALM 86 (144)
T ss_pred HHHcCHHH----HHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCcHHHH------HHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 35566654 334567777778888888777777777 55543333 3334446777778888888777776
Q ss_pred cCCCccccccchhhhhhHHHHHHhhccCcHHHHHHHHHHHHhCCCCCcccccHHHHHH
Q 004480 142 LGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQ 199 (750)
Q Consensus 142 ~~~~p~~~~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~ 199 (750)
+.|+.. ..+...+..+...|++++|+..|++.+... |++...+.....
T Consensus 87 --l~p~~~------~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~--p~~~~~~~~~~~ 134 (144)
T PRK15359 87 --LDASHP------EPVYQTGVCLKMMGEPGLAREAFQTAIKMS--YADASWSEIRQN 134 (144)
T ss_pred --cCCCCc------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCChHHHHHHHH
Confidence 444332 222222223334677777777777777644 666555544433
No 128
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.11 E-value=0.00035 Score=64.39 Aligned_cols=162 Identities=10% Similarity=0.013 Sum_probs=113.9
Q ss_pred CCcccccHHHHHHHHHcCCChHHHHHHhhhC----CCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 004480 187 PVKELDEEFRIVQLCVNKPDVNLAIRYACIV----PRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTI 262 (750)
Q Consensus 187 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~----~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 262 (750)
.|.+... ..+...+...|+-+....+.... +.+.......+....+.|++.+|+..|.+..... ++|..+|+.+
T Consensus 63 ~p~d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~-p~d~~~~~~l 140 (257)
T COG5010 63 NPEDLSI-AKLATALYLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA-PTDWEAWNLL 140 (257)
T ss_pred CcchHHH-HHHHHHHHhcccccchHHHHhhhhccCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC-CCChhhhhHH
Confidence 3666655 66677777778777777765552 4444566678999999999999999999998743 3688899999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCccHHHHHHHHHhhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHHcCChHH
Q 004480 263 IDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVL 342 (750)
Q Consensus 263 i~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~ 342 (750)
.-+|.+.|++++|..-|.+..+.- .-++..+|.|.-.+.-.|+.+.
T Consensus 141 gaaldq~Gr~~~Ar~ay~qAl~L~----------------------------------~~~p~~~nNlgms~~L~gd~~~ 186 (257)
T COG5010 141 GAALDQLGRFDEARRAYRQALELA----------------------------------PNEPSIANNLGMSLLLRGDLED 186 (257)
T ss_pred HHHHHHccChhHHHHHHHHHHHhc----------------------------------cCCchhhhhHHHHHHHcCCHHH
Confidence 999999999999999999887652 2344555556666666666666
Q ss_pred HHHHHHHHHHhhhcCCCccCHHHHHHHHHHHHhccCHHHHHHHHHHH
Q 004480 343 AQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDM 389 (750)
Q Consensus 343 A~~~~~~~~~~~~~g~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m 389 (750)
|..++...... -.-|...-..+.......|++++|.++..+-
T Consensus 187 A~~lll~a~l~-----~~ad~~v~~NLAl~~~~~g~~~~A~~i~~~e 228 (257)
T COG5010 187 AETLLLPAYLS-----PAADSRVRQNLALVVGLQGDFREAEDIAVQE 228 (257)
T ss_pred HHHHHHHHHhC-----CCCchHHHHHHHHHHhhcCChHHHHhhcccc
Confidence 66666655541 1225555555666666666666666655443
No 129
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.10 E-value=0.016 Score=59.08 Aligned_cols=425 Identities=12% Similarity=0.054 Sum_probs=209.2
Q ss_pred hhhcCchhHHHHHHHHHHhcCCCc-cccccchhhhhhHHHHHHhhccCcHHHHHHHHHHHHhCCCCCcccccHHHHHHHH
Q 004480 123 SIREGRIDCVVGVLKKLNELGVAP-LELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLC 201 (750)
Q Consensus 123 ~~~~g~~~~A~~~l~~~~~~~~~p-~~~~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~ 201 (750)
.+..|++++|+..|.+++. +.| |...|..- .+.++..|++++|++=-.+-++ +.|+=...|...+.++
T Consensus 12 a~s~~d~~~ai~~~t~ai~--l~p~nhvlySnr-------saa~a~~~~~~~al~da~k~~~--l~p~w~kgy~r~Gaa~ 80 (539)
T KOG0548|consen 12 AFSSGDFETAIRLFTEAIM--LSPTNHVLYSNR-------SAAYASLGSYEKALKDATKTRR--LNPDWAKGYSRKGAAL 80 (539)
T ss_pred hcccccHHHHHHHHHHHHc--cCCCccchhcch-------HHHHHHHhhHHHHHHHHHHHHh--cCCchhhHHHHhHHHH
Confidence 4688999999999999886 444 33322221 2234447888888876665555 4476667788899999
Q ss_pred HcCCChHHHHHHhhh----CCCCcchHHHHHHHHHhcCCHHHHH---HHHHHHHhCC---CCCCHHHHHHHHHHHHhcC-
Q 004480 202 VNKPDVNLAIRYACI----VPRADILFCNFVREFGKKRDLVSAL---RAYDASKKHL---SSPNMYICRTIIDVCGICG- 270 (750)
Q Consensus 202 ~~~~~~~~A~~~~~~----~~~~~~~~~~l~~~~~~~g~~~~A~---~~~~~~~~~~---~~~~~~~~~~li~~~~~~g- 270 (750)
.-.|++++|+..|.. -|.+...++.+..++.-.....+.. .++......- .......|..++..+-+.-
T Consensus 81 ~~lg~~~eA~~ay~~GL~~d~~n~~L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~ 160 (539)
T KOG0548|consen 81 FGLGDYEEAILAYSEGLEKDPSNKQLKTGLAQAYLEDYAADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPT 160 (539)
T ss_pred HhcccHHHHHHHHHHHhhcCCchHHHHHhHHHhhhHHHHhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcH
Confidence 999999999888766 3556677777777761111100000 0111110000 0000112222222221110
Q ss_pred ------CHHHHHHHHHHHHhCCCCccHHHHH-HHHHhhcCChH----HHHHHHHHHHH-cCCCCCHhhHHHHHHHHHHcC
Q 004480 271 ------DYMKSRAIYEDLRSQNVTLNIYVFN-SLMNVNAHDLK----FTLEVYKNMQK-LGVMADMASYNILLKACCLAG 338 (750)
Q Consensus 271 ------~~~~A~~~~~~m~~~g~~~~~~~~~-~ll~~~~~~~~----~a~~~~~~m~~-~g~~~~~~~~~~ll~~~~~~g 338 (750)
+........-.+. |+......-. ........... .......++.+ .....-..-...+.++..+..
T Consensus 161 ~l~~~l~d~r~m~a~~~l~--~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk 238 (539)
T KOG0548|consen 161 SLKLYLNDPRLMKADGQLK--GVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKK 238 (539)
T ss_pred hhhcccccHHHHHHHHHHh--cCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhh
Confidence 0000000000000 0000000000 00000000000 00000000000 000001122345666666777
Q ss_pred ChHHHHHHHHHHHHhhhcCCCccCHHHHHHHHHHHHhccCHHHHHHHHHHHHHCCCCCCHHHHH-------HHHHHHHhc
Q 004480 339 NTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWS-------SLINACANA 411 (750)
Q Consensus 339 ~~~~A~~~~~~~~~~~~~g~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~-------~li~~~~~~ 411 (750)
+++.|.+-+.....+ .-+..-++....+|...|.+.+....-+...+.|-. ...-|+ .+..+|.+.
T Consensus 239 ~f~~a~q~y~~a~el------~~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre-~rad~klIak~~~r~g~a~~k~ 311 (539)
T KOG0548|consen 239 DFETAIQHYAKALEL------ATDITYLNNIAAVYLERGKYAECIELCEKAVEVGRE-LRADYKLIAKALARLGNAYTKR 311 (539)
T ss_pred hHHHHHHHHHHHHhH------hhhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHH-HHHHHHHHHHHHHHhhhhhhhH
Confidence 777777777776652 323444555666677777776666666555544422 122222 233345555
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCChHHHHHHHHHHhhcccccccCCCCCCchhhhhhhhhhhccccc
Q 004480 412 GLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSIT 491 (750)
Q Consensus 412 g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 491 (750)
++++.++..|.+....-..|+.. .+....+++........-
T Consensus 312 ~~~~~ai~~~~kaLte~Rt~~~l---------s~lk~~Ek~~k~~e~~a~------------------------------ 352 (539)
T KOG0548|consen 312 EDYEGAIKYYQKALTEHRTPDLL---------SKLKEAEKALKEAERKAY------------------------------ 352 (539)
T ss_pred HhHHHHHHHHHHHhhhhcCHHHH---------HHHHHHHHHHHHHHHHHh------------------------------
Confidence 66666666666654433232211 112222222222222111
Q ss_pred CCCCccCCCccccccccCCCCccHHH--HHHHHHHHH-hcHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHH
Q 004480 492 NTPNFVPNSHYSSFDKRFSFKPTTTT--YNILMKACC-TDYYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGAL 568 (750)
Q Consensus 492 ~~~~~~~~~~~~~~~~~~~~~p~~~~--~~~li~~~~-~~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~ 568 (750)
+.|.... -..-...+. +++..|..-+.++++.. +-|...|....-+|.+.|.+..|+
T Consensus 353 -------------------~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~-P~Da~lYsNRAac~~kL~~~~~aL 412 (539)
T KOG0548|consen 353 -------------------INPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRD-PEDARLYSNRAACYLKLGEYPEAL 412 (539)
T ss_pred -------------------hChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcC-CchhHHHHHHHHHHHHHhhHHHHH
Confidence 1222210 011111222 47888999999998875 346778988889999999999998
Q ss_pred HHHHHHHHCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 004480 569 QILKIMREDGMSPD-VVAYTTAIKVCVRSKRLKQAFSLFEEMKHYQIQPNLVTYITLLRARSR 630 (750)
Q Consensus 569 ~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~ 630 (750)
.=.+..++. .|+ ...|.-=..++.-..++++|.+.|++..+. .|+..-+..-+.-|..
T Consensus 413 ~Da~~~ieL--~p~~~kgy~RKg~al~~mk~ydkAleay~eale~--dp~~~e~~~~~~rc~~ 471 (539)
T KOG0548|consen 413 KDAKKCIEL--DPNFIKAYLRKGAALRAMKEYDKALEAYQEALEL--DPSNAEAIDGYRRCVE 471 (539)
T ss_pred HHHHHHHhc--CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--CchhHHHHHHHHHHHH
Confidence 887777764 343 333443344455556788888888888764 4665555444444444
No 130
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.08 E-value=0.0025 Score=58.77 Aligned_cols=103 Identities=18% Similarity=0.219 Sum_probs=53.1
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH----cCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 004480 529 YYRVKALMNEMRTVGLSPNHISWTILIDACG----GSGNVEGALQILKIMREDGMSPDVVAYTTAIKVCVRSKRLKQAFS 604 (750)
Q Consensus 529 ~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~----~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~ 604 (750)
.+-|.+.++.|.+. .+..|.+-|..+|. ..+.+.+|.-+|++|.++ ..|+..+.|....++...|++++|..
T Consensus 153 ~d~A~~~lk~mq~i---ded~tLtQLA~awv~la~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~ 228 (299)
T KOG3081|consen 153 FDLAEKELKKMQQI---DEDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAES 228 (299)
T ss_pred HHHHHHHHHHHHcc---chHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHH
Confidence 34444444444442 23344444444432 233456666666666543 35566666666666666666666666
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 004480 605 LFEEMKHYQIQPNLVTYITLLRARSRYGSLHE 636 (750)
Q Consensus 605 ~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~ 636 (750)
++++..... .-++.|...+|.+-...|+..+
T Consensus 229 lL~eaL~kd-~~dpetL~Nliv~a~~~Gkd~~ 259 (299)
T KOG3081|consen 229 LLEEALDKD-AKDPETLANLIVLALHLGKDAE 259 (299)
T ss_pred HHHHHHhcc-CCCHHHHHHHHHHHHHhCCChH
Confidence 666665542 2245555555555555555433
No 131
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.08 E-value=0.001 Score=61.59 Aligned_cols=126 Identities=12% Similarity=0.103 Sum_probs=96.2
Q ss_pred ChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHHcCChHHHHHHHHHHHHhhhcCCCccCHHHHHHHHHHH-HhccC--HH
Q 004480 304 DLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVF-ADAKW--WQ 380 (750)
Q Consensus 304 ~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~g~~~~~~~~~~~li~~~-~~~g~--~~ 380 (750)
+.+++...++...+.+ +.|...|..+...|...|++++|...|++..++ .+.+...+..+..++ ...|+ .+
T Consensus 54 ~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l-----~P~~~~~~~~lA~aL~~~~g~~~~~ 127 (198)
T PRK10370 54 TPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDYDNALLAYRQALQL-----RGENAELYAALATVLYYQAGQHMTP 127 (198)
T ss_pred hHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-----CCCCHHHHHHHHHHHHHhcCCCCcH
Confidence 3344555555555543 567888999999999999999999999998873 234666777777764 66676 59
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHH
Q 004480 381 MALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCN 437 (750)
Q Consensus 381 ~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~ 437 (750)
+|.+++++..+.+.. +..++..+...+.+.|++++|...|+++.+.. +|+..-+.
T Consensus 128 ~A~~~l~~al~~dP~-~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~-~~~~~r~~ 182 (198)
T PRK10370 128 QTREMIDKALALDAN-EVTALMLLASDAFMQADYAQAIELWQKVLDLN-SPRVNRTQ 182 (198)
T ss_pred HHHHHHHHHHHhCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCccHHH
Confidence 999999999987644 77888889999999999999999999998874 55554443
No 132
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=98.05 E-value=8.1e-06 Score=50.84 Aligned_cols=33 Identities=27% Similarity=0.639 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC
Q 004480 584 VAYTTAIKVCVRSKRLKQAFSLFEEMKHYQIQP 616 (750)
Q Consensus 584 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 616 (750)
.+||++|.+|++.|+++.|.++|++|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 355555555555555555555555555555554
No 133
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.03 E-value=7.6e-06 Score=51.40 Aligned_cols=35 Identities=43% Similarity=0.716 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCH
Q 004480 549 ISWTILIDACGGSGNVEGALQILKIMREDGMSPDV 583 (750)
Q Consensus 549 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 583 (750)
.+||++|.+|++.|++++|.++|++|.+.|++||.
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 37999999999999999999999999999999983
No 134
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.00 E-value=0.0044 Score=57.25 Aligned_cols=242 Identities=12% Similarity=0.070 Sum_probs=114.1
Q ss_pred cCcHHHHHHHHHHHHhCCCCCcccccHHHHHHHHHcCCChHHHHHHhhhCCCCc-chHHHHHHHHHhcCCHHHHH-HHHH
Q 004480 168 SGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRAD-ILFCNFVREFGKKRDLVSAL-RAYD 245 (750)
Q Consensus 168 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~-~~~~ 245 (750)
.|.+..++..-..... .+.+.+.-..+.++|...|.+..-..-...-..++ .+.-.+...+..-++.++-+ ++.+
T Consensus 21 ~Gnyq~~ine~~~~~~---~~~~~e~d~y~~raylAlg~~~~~~~eI~~~~~~~lqAvr~~a~~~~~e~~~~~~~~~l~E 97 (299)
T KOG3081|consen 21 LGNYQQCINEAEKFSS---SKTDVELDVYMYRAYLALGQYQIVISEIKEGKATPLQAVRLLAEYLELESNKKSILASLYE 97 (299)
T ss_pred hhHHHHHHHHHHhhcc---ccchhHHHHHHHHHHHHcccccccccccccccCChHHHHHHHHHHhhCcchhHHHHHHHHH
Confidence 4666666554443222 22344445556666666665543222111111111 11222222222233333333 3344
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCccHHHHHHHHHhhcCChHHHHHHHHHHHHcCCCCCHh
Q 004480 246 ASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKFTLEVYKNMQKLGVMADMA 325 (750)
Q Consensus 246 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~a~~~~~~m~~~g~~~~~~ 325 (750)
++.......+......-...|.+.|++++|++.... |-..+....+.-+.....+.+.|.+.++.|.+. .+..
T Consensus 98 ~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~----~~~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~i---ded~ 170 (299)
T KOG3081|consen 98 LVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHL----GENLEAAALNVQILLKMHRFDLAEKELKKMQQI---DEDA 170 (299)
T ss_pred HHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhc----cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc---chHH
Confidence 444433333333333333457778888888877765 222344444444444444556666666666552 2444
Q ss_pred hHHHHHHHHHHc----CChHHHHHHHHHHHHhhhcCCCccCHHHHHHHHHHHHhccCHHHHHHHHHHHHHCCCCCCHHHH
Q 004480 326 SYNILLKACCLA----GNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITW 401 (750)
Q Consensus 326 ~~~~ll~~~~~~----g~~~~A~~~~~~~~~~~~~g~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~ 401 (750)
|.+.|..+|.+. +.+.+|.-+|+++... .+|+..+.+....++...|++++|..++++.+..... +..+.
T Consensus 171 tLtQLA~awv~la~ggek~qdAfyifeE~s~k-----~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~-dpetL 244 (299)
T KOG3081|consen 171 TLTQLAQAWVKLATGGEKIQDAFYIFEELSEK-----TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAK-DPETL 244 (299)
T ss_pred HHHHHHHHHHHHhccchhhhhHHHHHHHHhcc-----cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCC-CHHHH
Confidence 555455444432 3455566666665431 4556666666666666666666666666666655332 34444
Q ss_pred HHHHHHHHhcCCH-HHHHHHHHHHH
Q 004480 402 SSLINACANAGLV-EQAMHLFEEML 425 (750)
Q Consensus 402 ~~li~~~~~~g~~-~~a~~~~~~m~ 425 (750)
..+|..-...|.. +-..+.+.++.
T Consensus 245 ~Nliv~a~~~Gkd~~~~~r~l~QLk 269 (299)
T KOG3081|consen 245 ANLIVLALHLGKDAEVTERNLSQLK 269 (299)
T ss_pred HHHHHHHHHhCCChHHHHHHHHHHH
Confidence 4444433333333 22333444443
No 135
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=97.98 E-value=0.0086 Score=60.43 Aligned_cols=178 Identities=14% Similarity=0.060 Sum_probs=120.6
Q ss_pred CHHHHHHHHHHHHhCC--CCccHHHHHHHHHhhc-CChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHHcCChHHHHHHH
Q 004480 271 DYMKSRAIYEDLRSQN--VTLNIYVFNSLMNVNA-HDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIY 347 (750)
Q Consensus 271 ~~~~A~~~~~~m~~~g--~~~~~~~~~~ll~~~~-~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~ 347 (750)
+..++...-++++..+ -.|+...+...+.+.. .........+..+... -.-...-|..-+ .+...|++++|+..+
T Consensus 252 RIa~lr~ra~q~p~~~~~d~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~-~~~~aa~YG~A~-~~~~~~~~d~A~~~l 329 (484)
T COG4783 252 RIADLRNRAEQSPPYNKLDSPDFQLARARIRAKYEALPNQQAADLLAKRSK-RGGLAAQYGRAL-QTYLAGQYDEALKLL 329 (484)
T ss_pred HHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHhccccccchHHHHHHHhC-ccchHHHHHHHH-HHHHhcccchHHHHH
Confidence 3444555555554322 2366677777776532 2111112222222221 011223343333 455789999999999
Q ss_pred HHHHHhhhcCCCccCHHHHHHHHHHHHhccCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004480 348 GEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPN-TITWSSLINACANAGLVEQAMHLFEEMLQ 426 (750)
Q Consensus 348 ~~~~~~~~~g~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 426 (750)
+.+... .+-|...+......+.+.++.++|.+.++.+... .|+ ....-.+..+|.+.|++.+|..+++....
T Consensus 330 ~~L~~~-----~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l--~P~~~~l~~~~a~all~~g~~~eai~~L~~~~~ 402 (484)
T COG4783 330 QPLIAA-----QPDNPYYLELAGDILLEANKAKEAIERLKKALAL--DPNSPLLQLNLAQALLKGGKPQEAIRILNRYLF 402 (484)
T ss_pred HHHHHh-----CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc--CCCccHHHHHHHHHHHhcCChHHHHHHHHHHhh
Confidence 998762 3445555666778899999999999999999986 445 66677788999999999999999999887
Q ss_pred cCCCCCHHHHHHHHHHHHHhCChHHHHHHHHH
Q 004480 427 AGCEPNSQCCNILLQACVEACQFDRAFRLFRS 458 (750)
Q Consensus 427 ~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~ 458 (750)
.. +-|+..|..|-.+|...|+..++..-..+
T Consensus 403 ~~-p~dp~~w~~LAqay~~~g~~~~a~~A~AE 433 (484)
T COG4783 403 ND-PEDPNGWDLLAQAYAELGNRAEALLARAE 433 (484)
T ss_pred cC-CCCchHHHHHHHHHHHhCchHHHHHHHHH
Confidence 64 66889999999999999999888776655
No 136
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=97.97 E-value=0.044 Score=59.53 Aligned_cols=217 Identities=12% Similarity=0.119 Sum_probs=146.1
Q ss_pred cCcHHHHHHHHHHHHhCCCCCcccccHHHHHH--HHHcCCChHHHHHHhhhC----CCCcchHHHHHHHHHhcCCHHHHH
Q 004480 168 SGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQ--LCVNKPDVNLAIRYACIV----PRADILFCNFVREFGKKRDLVSAL 241 (750)
Q Consensus 168 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~A~~~~~~~----~~~~~~~~~l~~~~~~~g~~~~A~ 241 (750)
.+++..|++..+++.+.. |+.. +..+++ ...+.|+.++|..+++.. +.+..+...+-..|...++.++|.
T Consensus 22 ~~qfkkal~~~~kllkk~--Pn~~--~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~~ 97 (932)
T KOG2053|consen 22 SSQFKKALAKLGKLLKKH--PNAL--YAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEAV 97 (932)
T ss_pred hHHHHHHHHHHHHHHHHC--CCcH--HHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHHH
Confidence 689999999999998866 5543 333444 456899999999887764 345678888999999999999999
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCccHHHHHHHHHhhc----C--------ChHHHH
Q 004480 242 RAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNA----H--------DLKFTL 309 (750)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~----~--------~~~~a~ 309 (750)
.+|++.... -|+......+..+|.+.+.+.+-.+.=-+|-+. .+-+.+.|=++++... + -..-|.
T Consensus 98 ~~Ye~~~~~--~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~-~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~ 174 (932)
T KOG2053|consen 98 HLYERANQK--YPSEELLYHLFMAYVREKSYKKQQKAALQLYKN-FPKRAYYFWSVISLILQSIFSENELLDPILLALAE 174 (932)
T ss_pred HHHHHHHhh--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCcccchHHHHHHHHHHhccCCcccccchhHHHHH
Confidence 999999874 467777777778888888876544443333332 2334444444444311 1 123467
Q ss_pred HHHHHHHHcC-CCCCHhhHHHHHHHHHHcCChHHHHHHHHHHHHhhhcCCCccCHHHHHHHHHHHHhccCHHHHHHHHHH
Q 004480 310 EVYKNMQKLG-VMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKED 388 (750)
Q Consensus 310 ~~~~~m~~~g-~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~g~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 388 (750)
+.++.+.+.+ ---+..-...-+..+...|++++|..++..-.. +-....+...-+.-+..+...++|.+..++-.+
T Consensus 175 ~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la---~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~ 251 (932)
T KOG2053|consen 175 KMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLA---EKLTSANLYLENKKLDLLKLLNRWQELFELSSR 251 (932)
T ss_pred HHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHH---HhccccchHHHHHHHHHHHHhcChHHHHHHHHH
Confidence 7777776654 222223333344556678899999998843221 110233444555677788899999999999999
Q ss_pred HHHCCC
Q 004480 389 MLSAGV 394 (750)
Q Consensus 389 m~~~g~ 394 (750)
+...|.
T Consensus 252 Ll~k~~ 257 (932)
T KOG2053|consen 252 LLEKGN 257 (932)
T ss_pred HHHhCC
Confidence 998864
No 137
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=97.97 E-value=1.2e-05 Score=50.02 Aligned_cols=33 Identities=33% Similarity=0.740 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCC
Q 004480 549 ISWTILIDACGGSGNVEGALQILKIMREDGMSP 581 (750)
Q Consensus 549 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 581 (750)
.+|+.+|.+|++.|+++.|.++|++|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 589999999999999999999999999999988
No 138
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=97.93 E-value=0.00048 Score=60.08 Aligned_cols=113 Identities=9% Similarity=-0.044 Sum_probs=87.6
Q ss_pred HHHHHHHHHcCCCCCHhhHHHHHHHHHHcCChHHHHHHHHHHHHhhhcCCCccCHHHHHHHHHHHHhccCHHHHHHHHHH
Q 004480 309 LEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKED 388 (750)
Q Consensus 309 ~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~g~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 388 (750)
..+|++..+. .|+ .+..+...+...|++++|...|+..... -+.+...|..+..++...|++++|...|+.
T Consensus 13 ~~~~~~al~~--~p~--~~~~~g~~~~~~g~~~~A~~~~~~al~~-----~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~ 83 (144)
T PRK15359 13 EDILKQLLSV--DPE--TVYASGYASWQEGDYSRAVIDFSWLVMA-----QPWSWRAHIALAGTWMMLKEYTTAINFYGH 83 (144)
T ss_pred HHHHHHHHHc--CHH--HHHHHHHHHHHcCCHHHHHHHHHHHHHc-----CCCcHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 3445555442 233 3556677888999999999999988763 244677888888999999999999999999
Q ss_pred HHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH
Q 004480 389 MLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNS 433 (750)
Q Consensus 389 m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~ 433 (750)
..... +.+...+..+..++.+.|++++|...|+...+. .|+.
T Consensus 84 Al~l~-p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~--~p~~ 125 (144)
T PRK15359 84 ALMLD-ASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKM--SYAD 125 (144)
T ss_pred HHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCC
Confidence 99875 347888888999999999999999999998875 4543
No 139
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=97.88 E-value=0.00078 Score=67.66 Aligned_cols=132 Identities=11% Similarity=-0.003 Sum_probs=94.6
Q ss_pred cCcHHHHHHHHHHHHhCCCCCcccccHHHHHHHHHcCCChHHHHHHhhhC----CCCcchHHHHHHHHHhcCCHHHHHHH
Q 004480 168 SGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIV----PRADILFCNFVREFGKKRDLVSALRA 243 (750)
Q Consensus 168 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~----~~~~~~~~~l~~~~~~~g~~~~A~~~ 243 (750)
.|.+++|+..++.++... |+++..+...+..+...++.++|.+.++.. |.......++..+|.+.|++.+|++.
T Consensus 319 ~~~~d~A~~~l~~L~~~~--P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~all~~g~~~eai~~ 396 (484)
T COG4783 319 AGQYDEALKLLQPLIAAQ--PDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQALLKGGKPQEAIRI 396 (484)
T ss_pred hcccchHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHhcCChHHHHHH
Confidence 577777777777777644 777777777778888888888887776663 55566677777888888888888888
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCccHHHHHHHHHhhcCChHHHHHHHHHHHHc
Q 004480 244 YDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKFTLEVYKNMQKL 318 (750)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~a~~~~~~m~~~ 318 (750)
++...... +-|...|..|..+|...|+..++....-+.. .+.|+++.|...+....+.
T Consensus 397 L~~~~~~~-p~dp~~w~~LAqay~~~g~~~~a~~A~AE~~----------------~~~G~~~~A~~~l~~A~~~ 454 (484)
T COG4783 397 LNRYLFND-PEDPNGWDLLAQAYAELGNRAEALLARAEGY----------------ALAGRLEQAIIFLMRASQQ 454 (484)
T ss_pred HHHHhhcC-CCCchHHHHHHHHHHHhCchHHHHHHHHHHH----------------HhCCCHHHHHHHHHHHHHh
Confidence 87776643 2467778888888888888777777666554 2356667777666666554
No 140
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.82 E-value=0.00029 Score=55.72 Aligned_cols=79 Identities=16% Similarity=0.354 Sum_probs=62.4
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHHcC--------CHHHHHHHHHHHHHCCCCCCHHHHH
Q 004480 552 TILIDACGGSGNVEGALQILKIMREDGM-SPDVVAYTTAIKVCVRSK--------RLKQAFSLFEEMKHYQIQPNLVTYI 622 (750)
Q Consensus 552 ~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~~~~~~li~~~~~~g--------~~~~A~~~~~~m~~~g~~p~~~t~~ 622 (750)
...|.-+...+++...-.+|+.+++.|+ .|+..+|+.++.+.++.. ++-..+.+|+.|...+++|+..||+
T Consensus 29 i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYn 108 (120)
T PF08579_consen 29 IDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYN 108 (120)
T ss_pred HHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHH
Confidence 3445556666888888888888888888 888888888888877653 3446788888999888999999999
Q ss_pred HHHHHHHh
Q 004480 623 TLLRARSR 630 (750)
Q Consensus 623 ~li~~~~~ 630 (750)
.++..+.+
T Consensus 109 ivl~~Llk 116 (120)
T PF08579_consen 109 IVLGSLLK 116 (120)
T ss_pred HHHHHHHH
Confidence 99888754
No 141
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.78 E-value=2.4e-05 Score=47.40 Aligned_cols=29 Identities=21% Similarity=0.465 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCC
Q 004480 585 AYTTAIKVCVRSKRLKQAFSLFEEMKHYQ 613 (750)
Q Consensus 585 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g 613 (750)
+||++|.+|++.|++++|.++|++|.+.|
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g 30 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERG 30 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence 45555555555555555555555555444
No 142
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=97.78 E-value=0.0015 Score=56.60 Aligned_cols=108 Identities=7% Similarity=-0.008 Sum_probs=84.0
Q ss_pred CHhhHHHHHHHHHHcCChHHHHHHHHHHHHhhhcCCCccCHHHHHHHHHHHHhccCHHHHHHHHHHHHHCCCCCCHHHHH
Q 004480 323 DMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWS 402 (750)
Q Consensus 323 ~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~g~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~ 402 (750)
+......+...+...|++++|.+.|+.+... .+.+...|..+...+.+.|++++|..+++.....+ +.+...+.
T Consensus 16 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~-----~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~ 89 (135)
T TIGR02552 16 QLEQIYALAYNLYQQGRYDEALKLFQLLAAY-----DPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD-PDDPRPYF 89 (135)
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHh-----CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCChHHHH
Confidence 3455666777888899999999999888763 23467778888888999999999999999888764 34677777
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHH
Q 004480 403 SLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNI 438 (750)
Q Consensus 403 ~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ 438 (750)
.+...+...|++++|...|+...+. .|+...+..
T Consensus 90 ~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~ 123 (135)
T TIGR02552 90 HAAECLLALGEPESALKALDLAIEI--CGENPEYSE 123 (135)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHh--ccccchHHH
Confidence 8888899999999999999988875 455444433
No 143
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=97.77 E-value=0.053 Score=54.10 Aligned_cols=146 Identities=12% Similarity=0.042 Sum_probs=101.0
Q ss_pred CHHHHHHHHHHHHHhCChHHHHHHHHHHhhcccccccCCCCCCchhhhhhhhhhhcccccCCCCccCCCccccccccCCC
Q 004480 432 NSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSF 511 (750)
Q Consensus 432 ~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 511 (750)
-..+|...+....+..-++.|..+|-+..+.++ +
T Consensus 396 ~t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~----------------------------------------------~ 429 (660)
T COG5107 396 LTFVFCVHLNYVLRKRGLEAARKLFIKLRKEGI----------------------------------------------V 429 (660)
T ss_pred hhhHHHHHHHHHHHHhhHHHHHHHHHHHhccCC----------------------------------------------C
Confidence 345677777777777788888888887765543 3
Q ss_pred CccHHHHHHHHHHHH-hcHHHHHHHHHHHHHcCCCCCHHH-HHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCC--HHHHH
Q 004480 512 KPTTTTYNILMKACC-TDYYRVKALMNEMRTVGLSPNHIS-WTILIDACGGSGNVEGALQILKIMREDGMSPD--VVAYT 587 (750)
Q Consensus 512 ~p~~~~~~~li~~~~-~~~~~a~~l~~~m~~~~~~p~~~~-~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~~~~ 587 (750)
.+++..++++|.-+| ++...|..+|+-=... -||... .+-.+..+...++-+.|..+|+..+.+ +.-+ ...|.
T Consensus 430 ~h~vyi~~A~~E~~~~~d~~ta~~ifelGl~~--f~d~~~y~~kyl~fLi~inde~naraLFetsv~r-~~~~q~k~iy~ 506 (660)
T COG5107 430 GHHVYIYCAFIEYYATGDRATAYNIFELGLLK--FPDSTLYKEKYLLFLIRINDEENARALFETSVER-LEKTQLKRIYD 506 (660)
T ss_pred CcceeeeHHHHHHHhcCCcchHHHHHHHHHHh--CCCchHHHHHHHHHHHHhCcHHHHHHHHHHhHHH-HHHhhhhHHHH
Confidence 678888888888877 4677888888754443 244433 344556667778888888888865543 1223 56788
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 004480 588 TAIKVCVRSKRLKQAFSLFEEMKHYQIQPNLVTYITLLRAR 628 (750)
Q Consensus 588 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~ 628 (750)
.+|.-=..-|++..|..+=++|.+ +.|-..+...+..-|
T Consensus 507 kmi~YEs~~G~lN~v~sLe~rf~e--~~pQen~~evF~Sry 545 (660)
T COG5107 507 KMIEYESMVGSLNNVYSLEERFRE--LVPQENLIEVFTSRY 545 (660)
T ss_pred HHHHHHHhhcchHHHHhHHHHHHH--HcCcHhHHHHHHHHH
Confidence 888888888888888888888876 456655555555444
No 144
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.74 E-value=0.0033 Score=62.21 Aligned_cols=177 Identities=15% Similarity=0.121 Sum_probs=95.2
Q ss_pred cchhhhHHHHHHHHhhcCChHHHHHHHHHHHHhcCChhhHHhhhhHHHHHHHHHhhhhcCchhHHHHHHHHHHhcCCCcc
Q 004480 68 SSRNDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPL 147 (750)
Q Consensus 68 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~p~ 147 (750)
+.....|...+..|-..|++++|...|.++.......... ......+......+ +.+++++|++.|+++.+.
T Consensus 32 e~Aa~~y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~--~~Aa~~~~~Aa~~~-k~~~~~~Ai~~~~~A~~~----- 103 (282)
T PF14938_consen 32 EEAADLYEKAANCFKLAKDWEKAAEAYEKAADCYEKLGDK--FEAAKAYEEAANCY-KKGDPDEAIECYEKAIEI----- 103 (282)
T ss_dssp HHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHTT-H--HHHHHHHHHHHHHH-HHTTHHHHHHHHHHHHHH-----
T ss_pred HHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCH--HHHHHHHHHHHHHH-HhhCHHHHHHHHHHHHHH-----
Confidence 3367888899999999999999999998886653211110 11122333333333 344777777777666641
Q ss_pred ccccchhhhhhHHHHHHhhccCcHHHHHHHHHHHHhCCCCCcccccHHHHHHHHHcC-CChHHHHHHhhhC-------CC
Q 004480 148 ELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNK-PDVNLAIRYACIV-------PR 219 (750)
Q Consensus 148 ~~~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~A~~~~~~~-------~~ 219 (750)
+...|++..|-.++.. ++..|... |++++|.++|... ..
T Consensus 104 -----------------y~~~G~~~~aA~~~~~----------------lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~ 150 (282)
T PF14938_consen 104 -----------------YREAGRFSQAAKCLKE----------------LAEIYEEQLGDYEKAIEYYQKAAELYEQEGS 150 (282)
T ss_dssp -----------------HHHCT-HHHHHHHHHH----------------HHHHHCCTT--HHHHHHHHHHHHHHHHHTT-
T ss_pred -----------------HHhcCcHHHHHHHHHH----------------HHHHHHHHcCCHHHHHHHHHHHHHHHHHCCC
Confidence 1224555555444433 33334444 5555555554432 10
Q ss_pred ---CcchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-----CCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 004480 220 ---ADILFCNFVREFGKKRDLVSALRAYDASKKHLSS-----PNMY-ICRTIIDVCGICGDYMKSRAIYEDLRSQ 285 (750)
Q Consensus 220 ---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-----~~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~ 285 (750)
....+..++..+.+.|++++|..+|+++...-.. .++. .|-..+-++...||...|...|++....
T Consensus 151 ~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~ 225 (282)
T PF14938_consen 151 PHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQ 225 (282)
T ss_dssp HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTT
T ss_pred hhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 0134556777778888888888888877654322 1121 2222233455567777777777777644
No 145
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=97.73 E-value=0.073 Score=54.54 Aligned_cols=130 Identities=15% Similarity=0.132 Sum_probs=98.3
Q ss_pred CccHHHHHHHHHHHHh--cHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCC-HHHHH
Q 004480 512 KPTTTTYNILMKACCT--DYYRVKALMNEMRTVGLSP-NHISWTILIDACGGSGNVEGALQILKIMREDGMSPD-VVAYT 587 (750)
Q Consensus 512 ~p~~~~~~~li~~~~~--~~~~a~~l~~~m~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~ 587 (750)
+|+.. |...|+.--+ -.+.|..+|.+..+.+..+ ++.++++++.-|| .++...|.++|+-=.++ .+| ..--.
T Consensus 364 ~~tLv-~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~c-skD~~~AfrIFeLGLkk--f~d~p~yv~ 439 (656)
T KOG1914|consen 364 DLTLV-YCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYC-SKDKETAFRIFELGLKK--FGDSPEYVL 439 (656)
T ss_pred CCcee-hhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHh-cCChhHHHHHHHHHHHh--cCCChHHHH
Confidence 45543 4444443332 3678999999999988877 7778899998776 57889999999986553 344 44457
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Q 004480 588 TAIKVCVRSKRLKQAFSLFEEMKHYQIQPN--LVTYITLLRARSRYGSLHEVQQCLAVYQDMW 648 (750)
Q Consensus 588 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~t~~~li~~~~~~g~~~~~~~a~~~~~~m~ 648 (750)
..++-+...++-.-|..+|++....++.|| ..+|..+|.-=+..|++..+ +++-+++.
T Consensus 440 ~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si---~~lekR~~ 499 (656)
T KOG1914|consen 440 KYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSI---LKLEKRRF 499 (656)
T ss_pred HHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHH---HHHHHHHH
Confidence 778888899999999999999998877775 68999999999999997764 44545544
No 146
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=97.72 E-value=0.00053 Score=59.41 Aligned_cols=97 Identities=7% Similarity=0.018 Sum_probs=63.8
Q ss_pred CcccccHHHHHHHHHcCCChHHHHHHhhhC----CCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 004480 188 VKELDEEFRIVQLCVNKPDVNLAIRYACIV----PRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTII 263 (750)
Q Consensus 188 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~----~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li 263 (750)
|.+......++..+...|++++|...++.+ |.+...+..+...+.+.|++++|...|+...+.++ .+...+..+.
T Consensus 14 p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p-~~~~~~~~la 92 (135)
T TIGR02552 14 SEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDP-DDPRPYFHAA 92 (135)
T ss_pred hhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-CChHHHHHHH
Confidence 555555555666666667777776666553 44556677777777777777777777777766432 3455666666
Q ss_pred HHHHhcCCHHHHHHHHHHHHhC
Q 004480 264 DVCGICGDYMKSRAIYEDLRSQ 285 (750)
Q Consensus 264 ~~~~~~g~~~~A~~~~~~m~~~ 285 (750)
..+...|++++|...|+...+.
T Consensus 93 ~~~~~~g~~~~A~~~~~~al~~ 114 (135)
T TIGR02552 93 ECLLALGEPESALKALDLAIEI 114 (135)
T ss_pred HHHHHcCCHHHHHHHHHHHHHh
Confidence 6777777777777777776654
No 147
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.68 E-value=5.2e-05 Score=45.91 Aligned_cols=31 Identities=32% Similarity=0.581 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHCCC
Q 004480 549 ISWTILIDACGGSGNVEGALQILKIMREDGM 579 (750)
Q Consensus 549 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 579 (750)
+||+++|++|++.|++++|.++|++|.+.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 4799999999999999999999999998774
No 148
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.64 E-value=0.051 Score=50.13 Aligned_cols=186 Identities=12% Similarity=0.100 Sum_probs=132.7
Q ss_pred CCHHHHHHHHHHHHh---CC-CCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-ccHHHHHHHHHhhcCChHHH
Q 004480 235 RDLVSALRAYDASKK---HL-SSPNMY-ICRTIIDVCGICGDYMKSRAIYEDLRSQNVT-LNIYVFNSLMNVNAHDLKFT 308 (750)
Q Consensus 235 g~~~~A~~~~~~~~~---~~-~~~~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-~~~~~~~~ll~~~~~~~~~a 308 (750)
.+.++.++++.++.. .| ..++.+ .|..++-+...+|+.+-|...++++..+-.. +.+.-..+++---.+++++|
T Consensus 26 rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~A 105 (289)
T KOG3060|consen 26 RNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKEA 105 (289)
T ss_pred cCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhhH
Confidence 466777777777654 23 445655 4666667777888999999999888766321 22333333333344788899
Q ss_pred HHHHHHHHHcCCCCCHhhHHHHHHHHHHcCChHHHHHHHHHHHHhhhcCCCccCHHHHHHHHHHHHhccCHHHHHHHHHH
Q 004480 309 LEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKED 388 (750)
Q Consensus 309 ~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~g~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 388 (750)
.++|+.+.+.+ +.|.+++---+...-..|+--+|++-+....+. +..|...|.-+...|...|+++.|.-.+++
T Consensus 106 ~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-----F~~D~EAW~eLaeiY~~~~~f~kA~fClEE 179 (289)
T KOG3060|consen 106 IEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDK-----FMNDQEAWHELAEIYLSEGDFEKAAFCLEE 179 (289)
T ss_pred HHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-----hcCcHHHHHHHHHHHHhHhHHHHHHHHHHH
Confidence 99999998876 566777777777777788877888777776653 678999999999999999999999999999
Q ss_pred HHHCCCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHc
Q 004480 389 MLSAGVTPNTITWSSLINACANAG---LVEQAMHLFEEMLQA 427 (750)
Q Consensus 389 m~~~g~~p~~~~~~~li~~~~~~g---~~~~a~~~~~~m~~~ 427 (750)
+.-.. +-+...|..+...+.-.| +.+.+.++|.+..+.
T Consensus 180 ~ll~~-P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl 220 (289)
T KOG3060|consen 180 LLLIQ-PFNPLYFQRLAEVLYTQGGAENLELARKYYERALKL 220 (289)
T ss_pred HHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHh
Confidence 98763 224455555555544443 566788888888765
No 149
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.60 E-value=0.00081 Score=68.58 Aligned_cols=120 Identities=18% Similarity=0.189 Sum_probs=100.1
Q ss_pred CccHHHHHHHHHHHHh--cHHHHHHHHHHHHHc--CCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 004480 512 KPTTTTYNILMKACCT--DYYRVKALMNEMRTV--GLSPNHISWTILIDACGGSGNVEGALQILKIMREDGMSPDVVAYT 587 (750)
Q Consensus 512 ~p~~~~~~~li~~~~~--~~~~a~~l~~~m~~~--~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~ 587 (750)
+.+......+++.+.. +.+.+..++...... ...--..|..++|+.|...|..++++.+++.=...|+-||..++|
T Consensus 63 ~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n 142 (429)
T PF10037_consen 63 PVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFN 142 (429)
T ss_pred CCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHH
Confidence 4466667777777664 578888888887765 222234456799999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 004480 588 TAIKVCVRSKRLKQAFSLFEEMKHYQIQPNLVTYITLLRARSRY 631 (750)
Q Consensus 588 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~ 631 (750)
.||+.+.+.|++..|.++...|...+...+..|+.--+.+|.+.
T Consensus 143 ~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 143 LLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 99999999999999999999999888888889988888888887
No 150
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.59 E-value=0.00068 Score=60.88 Aligned_cols=88 Identities=24% Similarity=0.311 Sum_probs=56.8
Q ss_pred CCHHHHHHHHHHHH-----cCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH----------------cCCHHHHHH
Q 004480 546 PNHISWTILIDACG-----GSGNVEGALQILKIMREDGMSPDVVAYTTAIKVCVR----------------SKRLKQAFS 604 (750)
Q Consensus 546 p~~~~~~~li~~~~-----~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~----------------~g~~~~A~~ 604 (750)
.|..+|..+++.|. +.|.++=....+..|.+.|+.-|..+|+.|++.+=+ -.+.+-|++
T Consensus 45 k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~hyp~Qq~c~i~ 124 (228)
T PF06239_consen 45 KDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMHYPRQQECAID 124 (228)
T ss_pred ccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhccCcHHHHHHHH
Confidence 34455555555553 234555555555555555555566666665554422 134567888
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 004480 605 LFEEMKHYQIQPNLVTYITLLRARSRYGS 633 (750)
Q Consensus 605 ~~~~m~~~g~~p~~~t~~~li~~~~~~g~ 633 (750)
++++|...|+-||..|+..|++.+.+.+.
T Consensus 125 lL~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 125 LLEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred HHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 89999999999999999999998877765
No 151
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=97.57 E-value=0.0021 Score=65.33 Aligned_cols=124 Identities=14% Similarity=0.048 Sum_probs=98.6
Q ss_pred chhhhhhHHHHHHhhccCcHHHHHHHHHHHHhCCCCCcccccHHHHHHHHHcCCChHHHHHHhhh----CCCCcchHHHH
Q 004480 152 GSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACI----VPRADILFCNF 227 (750)
Q Consensus 152 ~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~----~~~~~~~~~~l 227 (750)
+.+...+++.+.. .++++.|+++|+++.+.. | .....+++.+...++..+|.++... .|.+.......
T Consensus 169 NyLv~~Ll~~l~~---t~~~~~ai~lle~L~~~~--p---ev~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Q 240 (395)
T PF09295_consen 169 NYLVDTLLKYLSL---TQRYDEAIELLEKLRERD--P---EVAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQ 240 (395)
T ss_pred hHHHHHHHHHHhh---cccHHHHHHHHHHHHhcC--C---cHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 3444555554433 789999999999998765 4 3456688888888888899887655 36666777778
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 004480 228 VREFGKKRDLVSALRAYDASKKHLSSPN-MYICRTIIDVCGICGDYMKSRAIYEDLRSQ 285 (750)
Q Consensus 228 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 285 (750)
...|.+.++++.|+.+.+++.+. .|+ ..+|..|..+|.+.|+++.|+-.++.+.-.
T Consensus 241 a~fLl~k~~~~lAL~iAk~av~l--sP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm~ 297 (395)
T PF09295_consen 241 AEFLLSKKKYELALEIAKKAVEL--SPSEFETWYQLAECYIQLGDFENALLALNSCPML 297 (395)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHh--CchhHHHHHHHHHHHHhcCCHHHHHHHHhcCcCC
Confidence 88899999999999999999884 454 569999999999999999999999987643
No 152
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=97.55 E-value=0.0042 Score=54.42 Aligned_cols=128 Identities=13% Similarity=0.144 Sum_probs=81.6
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHHhhhcCCCccCHHHHHHHHHHHHhccCHHHHHHHHHHHHHCCCCCCH--HHHHH
Q 004480 326 SYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNT--ITWSS 403 (750)
Q Consensus 326 ~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~g~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~--~~~~~ 403 (750)
.|..++..+ ..++...+...++.+... .+...........+...+...|++++|...|+........|+. .....
T Consensus 14 ~y~~~~~~~-~~~~~~~~~~~~~~l~~~--~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~ 90 (145)
T PF09976_consen 14 LYEQALQAL-QAGDPAKAEAAAEQLAKD--YPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLR 90 (145)
T ss_pred HHHHHHHHH-HCCCHHHHHHHHHHHHHH--CCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHH
Confidence 344444444 467777777777777652 1100111233444567777888888888888888876533322 23445
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCChHHHHHHHHH
Q 004480 404 LINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRS 458 (750)
Q Consensus 404 li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~ 458 (750)
+...+...|++++|+..++..... ......+....+.|.+.|++++|...|+.
T Consensus 91 LA~~~~~~~~~d~Al~~L~~~~~~--~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 91 LARILLQQGQYDEALATLQQIPDE--AFKALAAELLGDIYLAQGDYDEARAAYQK 143 (145)
T ss_pred HHHHHHHcCCHHHHHHHHHhccCc--chHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 667777888888888888664332 23444566677788888888888888765
No 153
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.55 E-value=0.0011 Score=67.53 Aligned_cols=126 Identities=13% Similarity=0.130 Sum_probs=106.4
Q ss_pred CCCCCHhhHHHHHHHHHHcCChHHHHHHHHHHHHhhhcCCCccCHHHHHHHHHHHHhccCHHHHHHHHHHHHHCCCCCCH
Q 004480 319 GVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNT 398 (750)
Q Consensus 319 g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~g~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~ 398 (750)
+.+.+......+++.+....+++++..++-........ ...-..|..++++.|.+.|..+.++.++..=...|+-||.
T Consensus 61 ~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~--~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~ 138 (429)
T PF10037_consen 61 KKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNC--SYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDN 138 (429)
T ss_pred CCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCccc--ccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCCh
Confidence 44667778888888888888899999998888763211 2223345679999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHh
Q 004480 399 ITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEA 446 (750)
Q Consensus 399 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~ 446 (750)
.+|+.||+.+.+.|++..|.++..+|..++...+..|+...+.+|.+.
T Consensus 139 ~s~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 139 FSFNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred hhHHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 999999999999999999999999999888777888888888877776
No 154
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=97.55 E-value=0.0025 Score=55.82 Aligned_cols=121 Identities=12% Similarity=0.048 Sum_probs=65.8
Q ss_pred hcCchhHHHHHHHHHHhcCCCccccccchhhhhhHHHHHHhhccCcHHHHHHHHHHHHhCCCCCcccccHHHHHHHHHcC
Q 004480 125 REGRIDCVVGVLKKLNELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNK 204 (750)
Q Consensus 125 ~~g~~~~A~~~l~~~~~~~~~p~~~~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 204 (750)
..++...+...++.+.+. .|+.. + .....+.....+...|++++|...|+++.... +++.. .
T Consensus 23 ~~~~~~~~~~~~~~l~~~--~~~s~-y--a~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~--~d~~l--~--------- 84 (145)
T PF09976_consen 23 QAGDPAKAEAAAEQLAKD--YPSSP-Y--AALAALQLAKAAYEQGDYDEAKAALEKALANA--PDPEL--K--------- 84 (145)
T ss_pred HCCCHHHHHHHHHHHHHH--CCCCh-H--HHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--CCHHH--H---------
Confidence 578888888888888874 23221 1 11222333344555888999999888888755 22210 0
Q ss_pred CChHHHHHHhhhCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 004480 205 PDVNLAIRYACIVPRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYED 281 (750)
Q Consensus 205 ~~~~~A~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 281 (750)
..+...+...+...|++++|+..++..... ......+....++|.+.|++++|...|+.
T Consensus 85 ----------------~~a~l~LA~~~~~~~~~d~Al~~L~~~~~~--~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 85 ----------------PLARLRLARILLQQGQYDEALATLQQIPDE--AFKALAAELLGDIYLAQGDYDEARAAYQK 143 (145)
T ss_pred ----------------HHHHHHHHHHHHHcCCHHHHHHHHHhccCc--chHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 022333445555556666666655443221 12233444555566666666666666554
No 155
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=97.53 E-value=0.0037 Score=63.60 Aligned_cols=125 Identities=13% Similarity=0.128 Sum_probs=102.6
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHHhhhcCCCccCHHHHHHHHHHHHhccCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 004480 326 SYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLI 405 (750)
Q Consensus 326 ~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~g~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li 405 (750)
....|+..+...++++.|..+|+++.+ -.|+ ....++..+...++-.+|.+++.+.+... +-+......-.
T Consensus 171 Lv~~Ll~~l~~t~~~~~ai~lle~L~~------~~pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa 241 (395)
T PF09295_consen 171 LVDTLLKYLSLTQRYDEAIELLEKLRE------RDPE--VAVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQA 241 (395)
T ss_pred HHHHHHHHHhhcccHHHHHHHHHHHHh------cCCc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHH
Confidence 344566777788999999999999986 2355 44557788888899999999999999763 33677777777
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHHhCChHHHHHHHHHHhh
Q 004480 406 NACANAGLVEQAMHLFEEMLQAGCEP-NSQCCNILLQACVEACQFDRAFRLFRSWTL 461 (750)
Q Consensus 406 ~~~~~~g~~~~a~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~ 461 (750)
..|.+.++++.|+.+.+++.+. .| +..+|..|..+|.+.|+++.|+..++.+..
T Consensus 242 ~fLl~k~~~~lAL~iAk~av~l--sP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm 296 (395)
T PF09295_consen 242 EFLLSKKKYELALEIAKKAVEL--SPSEFETWYQLAECYIQLGDFENALLALNSCPM 296 (395)
T ss_pred HHHHhcCCHHHHHHHHHHHHHh--CchhHHHHHHHHHHHHhcCCHHHHHHHHhcCcC
Confidence 8899999999999999999986 55 556999999999999999999999987753
No 156
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.51 E-value=0.0073 Score=59.76 Aligned_cols=199 Identities=11% Similarity=0.088 Sum_probs=112.9
Q ss_pred hhhcCchhHHHHHHHHHHhcCCCccccccchhhhhhHHHHHHhhccCcHHHHHHHHHHHHhCCCCCcccccHHHHHHHHH
Q 004480 123 SIREGRIDCVVGVLKKLNELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCV 202 (750)
Q Consensus 123 ~~~~g~~~~A~~~l~~~~~~~~~p~~~~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 202 (750)
|-..|++++|.+.|.++.+.....+. ....-..+..+...+. .+++++|+..+++ .+..|.
T Consensus 45 fk~~~~~~~A~~ay~kAa~~~~~~~~--~~~Aa~~~~~Aa~~~k-~~~~~~Ai~~~~~----------------A~~~y~ 105 (282)
T PF14938_consen 45 FKLAKDWEKAAEAYEKAADCYEKLGD--KFEAAKAYEEAANCYK-KGDPDEAIECYEK----------------AIEIYR 105 (282)
T ss_dssp HHHTT-CHHHHHHHHHHHHHHHHTT---HHHHHHHHHHHHHHHH-HTTHHHHHHHHHH----------------HHHHHH
T ss_pred HHHHhccchhHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHHHH-hhCHHHHHHHHHH----------------HHHHHH
Confidence 67789999999998887653211111 0112222333322222 2355666655554 344566
Q ss_pred cCCChHHHHHHhhhCCCCcchHHHHHHHHHhc-CCHHHHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHhcCCHHHHH
Q 004480 203 NKPDVNLAIRYACIVPRADILFCNFVREFGKK-RDLVSALRAYDASKKH----LSSP-NMYICRTIIDVCGICGDYMKSR 276 (750)
Q Consensus 203 ~~~~~~~A~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~----~~~~-~~~~~~~li~~~~~~g~~~~A~ 276 (750)
..|++..|-+ .+..+...|... |++++|++.|++..+. +..- -...+..+...+.+.|++++|.
T Consensus 106 ~~G~~~~aA~----------~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~ 175 (282)
T PF14938_consen 106 EAGRFSQAAK----------CLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAI 175 (282)
T ss_dssp HCT-HHHHHH----------HHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHH
T ss_pred hcCcHHHHHH----------HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHH
Confidence 6777776643 456678888888 9999999999887652 2111 1346677888899999999999
Q ss_pred HHHHHHHhCCCC-----ccH--HHHHHHHH-hhcCChHHHHHHHHHHHHc--CCCCC--HhhHHHHHHHHHHc--CChHH
Q 004480 277 AIYEDLRSQNVT-----LNI--YVFNSLMN-VNAHDLKFTLEVYKNMQKL--GVMAD--MASYNILLKACCLA--GNTVL 342 (750)
Q Consensus 277 ~~~~~m~~~g~~-----~~~--~~~~~ll~-~~~~~~~~a~~~~~~m~~~--g~~~~--~~~~~~ll~~~~~~--g~~~~ 342 (750)
++|++....-.. .++ ..+..+|. ...||...|.+.|++.... ++..+ ......|+.++-.. ..+..
T Consensus 176 ~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~~~~D~e~f~~ 255 (282)
T PF14938_consen 176 EIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEAYEEGDVEAFTE 255 (282)
T ss_dssp HHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHHHTT-CCCHHH
T ss_pred HHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHhCCHHHHHH
Confidence 999998764322 222 12233333 3557888888888887654 22222 33455566665432 23445
Q ss_pred HHHHHHHH
Q 004480 343 AQEIYGEV 350 (750)
Q Consensus 343 A~~~~~~~ 350 (750)
+..-|+.+
T Consensus 256 av~~~d~~ 263 (282)
T PF14938_consen 256 AVAEYDSI 263 (282)
T ss_dssp HCHHHTTS
T ss_pred HHHHHccc
Confidence 55555544
No 157
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=97.49 E-value=0.001 Score=57.13 Aligned_cols=93 Identities=16% Similarity=0.108 Sum_probs=68.2
Q ss_pred hhhhHHHHHHhhccCcHHHHHHHHHHHHhCCCCCcccccHHHHHHHHHcCCChHHHHHHhhhC----CCCcchHHHHHHH
Q 004480 155 FKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIV----PRADILFCNFVRE 230 (750)
Q Consensus 155 ~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~----~~~~~~~~~l~~~ 230 (750)
++.+-.....+...|++++|.++|+-+.... |.+...|..|+.++-..|++.+|+..|... |+++..+..+..+
T Consensus 35 l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~D--p~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c 112 (157)
T PRK15363 35 LNTLYRYAMQLMEVKEFAGAARLFQLLTIYD--AWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAEC 112 (157)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHH
Confidence 3444444445556899999999999888754 777777888888887778888777777663 6666777777777
Q ss_pred HHhcCCHHHHHHHHHHHHh
Q 004480 231 FGKKRDLVSALRAYDASKK 249 (750)
Q Consensus 231 ~~~~g~~~~A~~~~~~~~~ 249 (750)
+...|+.+.|++.|+..+.
T Consensus 113 ~L~lG~~~~A~~aF~~Ai~ 131 (157)
T PRK15363 113 YLACDNVCYAIKALKAVVR 131 (157)
T ss_pred HHHcCCHHHHHHHHHHHHH
Confidence 7777777777777776654
No 158
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.39 E-value=0.027 Score=53.94 Aligned_cols=188 Identities=8% Similarity=-0.024 Sum_probs=117.0
Q ss_pred hhhHHHHHHHHhhcCChHHHHHHHHHHHHhcCChhhHHhhhhHHHHHHHHHhhhhcCchhHHHHHHHHHHhcCCCccccc
Q 004480 71 NDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLELF 150 (750)
Q Consensus 71 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~p~~~~ 150 (750)
...+...+..+.+.|++++|+..|++++...+.+. . .....-.++.++.+.+++++|+..+++.++. .|+...
T Consensus 32 ~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~--~---a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~--~P~~~~ 104 (243)
T PRK10866 32 PSEIYATAQQKLQDGNWKQAITQLEALDNRYPFGP--Y---SQQVQLDLIYAYYKNADLPLAQAAIDRFIRL--NPTHPN 104 (243)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCh--H---HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CcCCCc
Confidence 33444566777789999999999999999844332 1 1223346777789999999999999999984 554432
Q ss_pred cchhhhhhHHHHHH--hh---------------ccCcHHHHHHHHHHHHhCCCCCcccccHHHHHHHHHcCCChHHHHHH
Q 004480 151 DGSGFKLLKNECQR--LL---------------DSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRY 213 (750)
Q Consensus 151 ~~~~~~~l~~~~~~--~~---------------~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 213 (750)
.. +..+..+.+. +. +.....+|+..|+.++..- |+... ..+|...
T Consensus 105 ~~--~a~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~y--P~S~y--------------a~~A~~r 166 (243)
T PRK10866 105 ID--YVLYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGY--PNSQY--------------TTDATKR 166 (243)
T ss_pred hH--HHHHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHC--cCChh--------------HHHHHHH
Confidence 11 1122221110 00 1122346777777777644 54422 1122111
Q ss_pred hhhCCCC-cchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 004480 214 ACIVPRA-DILFCNFVREFGKKRDLVSALRAYDASKKHLSS--PNMYICRTIIDVCGICGDYMKSRAIYEDLR 283 (750)
Q Consensus 214 ~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 283 (750)
...+... ..--..+...|.+.|.+..|..-|+.+.+.-+. ....+...++.+|.+.|..++|......+.
T Consensus 167 l~~l~~~la~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~ 239 (243)
T PRK10866 167 LVFLKDRLAKYELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIA 239 (243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence 1111000 011224677899999999999999999875332 235577788899999999999988776554
No 159
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.30 E-value=0.0039 Score=52.43 Aligned_cols=109 Identities=10% Similarity=-0.046 Sum_probs=75.3
Q ss_pred hhhHHHHHHHHhhcCChHHHHHHHHHHHHhcCChhhHHhhhhHHHHHHHHHhhhhcCchhHHHHHHHHHHhcCCCccccc
Q 004480 71 NDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLELF 150 (750)
Q Consensus 71 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~p~~~~ 150 (750)
+..+..++..+.+.|++++|...|+.++...+ +... .......++..+.+.|+++.|...|+.+... .|+...
T Consensus 2 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~--~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~p~~~~ 74 (119)
T TIGR02795 2 EEAYYDAALLVLKAGDYADAIQAFQAFLKKYP--KSTY---APNAHYWLGEAYYAQGKYADAAKAFLAVVKK--YPKSPK 74 (119)
T ss_pred cHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCC--Cccc---cHHHHHHHHHHHHhhccHHHHHHHHHHHHHH--CCCCCc
Confidence 34567888899999999999999999998743 2210 1122234566688999999999999999874 343321
Q ss_pred cchhhhhhHHHHHHhhccCcHHHHHHHHHHHHhCCCCCccc
Q 004480 151 DGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKEL 191 (750)
Q Consensus 151 ~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 191 (750)
. ..++...+..+...|+.++|...+++++... |++.
T Consensus 75 ~---~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--p~~~ 110 (119)
T TIGR02795 75 A---PDALLKLGMSLQELGDKEKAKATLQQVIKRY--PGSS 110 (119)
T ss_pred c---cHHHHHHHHHHHHhCChHHHHHHHHHHHHHC--cCCh
Confidence 1 1223333334555899999999999998865 5543
No 160
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.27 E-value=0.0059 Score=55.07 Aligned_cols=89 Identities=19% Similarity=0.257 Sum_probs=66.0
Q ss_pred cCHHHHHHHHHHHHh-----ccCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc----------------CCHHHHHH
Q 004480 361 LDVFTYSTIVKVFAD-----AKWWQMALKVKEDMLSAGVTPNTITWSSLINACANA----------------GLVEQAMH 419 (750)
Q Consensus 361 ~~~~~~~~li~~~~~-----~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~----------------g~~~~a~~ 419 (750)
.|..+|..++..|.+ .|..+=....+..|.+-|+.-|..+|+.|++.+=+. .+-+-|++
T Consensus 45 k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~hyp~Qq~c~i~ 124 (228)
T PF06239_consen 45 KDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMHYPRQQECAID 124 (228)
T ss_pred ccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhccCcHHHHHHHH
Confidence 466666666666653 355666666777777777777777777777766541 23567899
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHHhCCh
Q 004480 420 LFEEMLQAGCEPNSQCCNILLQACVEACQF 449 (750)
Q Consensus 420 ~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~ 449 (750)
++++|...|+-||..++..+++.+.+.+..
T Consensus 125 lL~qME~~gV~Pd~Et~~~ll~iFG~~s~p 154 (228)
T PF06239_consen 125 LLEQMENNGVMPDKETEQMLLNIFGRKSHP 154 (228)
T ss_pred HHHHHHHcCCCCcHHHHHHHHHHhccccHH
Confidence 999999999999999999999998665543
No 161
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.24 E-value=0.012 Score=49.43 Aligned_cols=101 Identities=11% Similarity=-0.048 Sum_probs=72.6
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHHhhhcCCCccCHHHHHHHHHHHHhccCHHHHHHHHHHHHHCCCC--CCHHHHHH
Q 004480 326 SYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVT--PNTITWSS 403 (750)
Q Consensus 326 ~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~g~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~--p~~~~~~~ 403 (750)
++-.+...+.+.|++++|.+.|..+...... -......+..+..++.+.|++++|...|+.+...... .....+..
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~ 81 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPK--STYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLK 81 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC--ccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHH
Confidence 4556677788888999999988888762100 0112345666788888889999999999888765322 12456777
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcC
Q 004480 404 LINACANAGLVEQAMHLFEEMLQAG 428 (750)
Q Consensus 404 li~~~~~~g~~~~a~~~~~~m~~~~ 428 (750)
+..++.+.|+.++|...++++.+..
T Consensus 82 ~~~~~~~~~~~~~A~~~~~~~~~~~ 106 (119)
T TIGR02795 82 LGMSLQELGDKEKAKATLQQVIKRY 106 (119)
T ss_pred HHHHHHHhCChHHHHHHHHHHHHHC
Confidence 7788888889999999998888763
No 162
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.17 E-value=0.0038 Score=63.82 Aligned_cols=88 Identities=10% Similarity=-0.006 Sum_probs=50.4
Q ss_pred hhccCcHHHHHHHHHHHHhCCCCCcccccHHHHHHHHHcCCChHHHHHHhhhCCCCcchHHHHHHHHHhcCCHHHHHHHH
Q 004480 165 LLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRADILFCNFVREFGKKRDLVSALRAY 244 (750)
Q Consensus 165 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 244 (750)
+...|++++|++.|++++... |.+...+..++ .+|.+.|++++|+..+
T Consensus 12 a~~~~~~~~Ai~~~~~Al~~~--P~~~~a~~~~a------------------------------~~~~~~g~~~eAl~~~ 59 (356)
T PLN03088 12 AFVDDDFALAVDLYTQAIDLD--PNNAELYADRA------------------------------QANIKLGNFTEAVADA 59 (356)
T ss_pred HHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHH------------------------------HHHHHcCCHHHHHHHH
Confidence 334799999999999988755 65554444444 4444555555555555
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 004480 245 DASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQ 285 (750)
Q Consensus 245 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 285 (750)
+++++... .+...|..+..+|...|++++|+..|++..+.
T Consensus 60 ~~Al~l~P-~~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l 99 (356)
T PLN03088 60 NKAIELDP-SLAKAYLRKGTACMKLEEYQTAKAALEKGASL 99 (356)
T ss_pred HHHHHhCc-CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 55554321 23444555555555555555555555555543
No 163
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=97.11 E-value=0.0049 Score=52.99 Aligned_cols=97 Identities=8% Similarity=0.015 Sum_probs=78.1
Q ss_pred CcccccHHHHHHHHHcCCChHHHHHHhhhC----CCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 004480 188 VKELDEEFRIVQLCVNKPDVNLAIRYACIV----PRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTII 263 (750)
Q Consensus 188 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~----~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li 263 (750)
+++......++..+...|++++|.++|+.+ |.+...|..|.-.+-..|++.+|+..|.......+ -|...+-.+.
T Consensus 32 ~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~-ddp~~~~~ag 110 (157)
T PRK15363 32 TQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKI-DAPQAPWAAA 110 (157)
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCchHHHHHH
Confidence 444555666777788899999999988774 56667888899999999999999999998887553 4677788888
Q ss_pred HHHHhcCCHHHHHHHHHHHHhC
Q 004480 264 DVCGICGDYMKSRAIYEDLRSQ 285 (750)
Q Consensus 264 ~~~~~~g~~~~A~~~~~~m~~~ 285 (750)
.++...|+.+.|.+.|+..+..
T Consensus 111 ~c~L~lG~~~~A~~aF~~Ai~~ 132 (157)
T PRK15363 111 ECYLACDNVCYAIKALKAVVRI 132 (157)
T ss_pred HHHHHcCCHHHHHHHHHHHHHH
Confidence 8889999999999999877654
No 164
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.08 E-value=0.011 Score=46.88 Aligned_cols=88 Identities=18% Similarity=0.200 Sum_probs=38.5
Q ss_pred HHHHHhccCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCh
Q 004480 370 VKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQF 449 (750)
Q Consensus 370 i~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~ 449 (750)
...+...|++++|...+++..+.. +.+...+..+...+...+++++|.+.++...+.. +.+..++..+...+...|++
T Consensus 7 a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 84 (100)
T cd00189 7 GNLYYKLGDYDEALEYYEKALELD-PDNADAYYNLAAAYYKLGKYEEALEDYEKALELD-PDNAKAYYNLGLAYYKLGKY 84 (100)
T ss_pred HHHHHHHhcHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CcchhHHHHHHHHHHHHHhH
Confidence 333444444444444444444332 1122334444444444455555555554444432 22223444444444455555
Q ss_pred HHHHHHHHHH
Q 004480 450 DRAFRLFRSW 459 (750)
Q Consensus 450 ~~A~~~~~~~ 459 (750)
++|...+...
T Consensus 85 ~~a~~~~~~~ 94 (100)
T cd00189 85 EEALEAYEKA 94 (100)
T ss_pred HHHHHHHHHH
Confidence 5555544443
No 165
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=97.07 E-value=0.04 Score=54.22 Aligned_cols=140 Identities=16% Similarity=0.038 Sum_probs=91.4
Q ss_pred hhHHHHHHHHHHcCChHHHHHHHHHHHHhhh-cCCCccCHHHHHHHHHHHHhccCHHHHHHHHHHHHHC----CC-CCCH
Q 004480 325 ASYNILLKACCLAGNTVLAQEIYGEVKHLEA-KGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSA----GV-TPNT 398 (750)
Q Consensus 325 ~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~-~g~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----g~-~p~~ 398 (750)
..|..|.+.|.-.|+++.|....+.-..+.. -|.-......+..+.+++.-.|+++.|.+.|+.-... |- ....
T Consensus 196 Ra~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEA 275 (639)
T KOG1130|consen 196 RAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEA 275 (639)
T ss_pred chhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHH
Confidence 4567777778888888888876554332211 1211123456778888888889999998888765432 21 1123
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHc-----CCCCCHHHHHHHHHHHHHhCChHHHHHHHHHHhhccc
Q 004480 399 ITWSSLINACANAGLVEQAMHLFEEMLQA-----GCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKT 464 (750)
Q Consensus 399 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~-----~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~ 464 (750)
.+..+|.++|.-..++++|+.++.+-+.- ...-....|-+|-.+|...|..++|+.+...-.....
T Consensus 276 QscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~~s~ 346 (639)
T KOG1130|consen 276 QSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLRSSL 346 (639)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Confidence 44567788888788888888887654321 1123456778888888888988988887766554433
No 166
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.07 E-value=0.047 Score=49.96 Aligned_cols=214 Identities=12% Similarity=0.084 Sum_probs=105.4
Q ss_pred cCCcc--hhhhHHHHHHHHhhcCChHHHHHHHHHHHHhcCChhhHHhhhhHHHHHHHHHhhhhcCchhHHHHHHHHHHhc
Q 004480 65 RDLSS--RNDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNEL 142 (750)
Q Consensus 65 ~~p~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~ 142 (750)
|.|+. ....|.....+|....++++|...+.++.+-.-. .-..++....+...+...-....+.+|..+++++...
T Consensus 23 wkad~dgaas~yekAAvafRnAk~feKakdcLlkA~~~yEn--nrslfhAAKayEqaamLake~~klsEvvdl~eKAs~l 100 (308)
T KOG1585|consen 23 WKADWDGAASLYEKAAVAFRNAKKFEKAKDCLLKASKGYEN--NRSLFHAAKAYEQAAMLAKELSKLSEVVDLYEKASEL 100 (308)
T ss_pred cCCCchhhHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHh--cccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 55543 5678888888999999999999988888754211 1112222333334444444555666666666655432
Q ss_pred ---CCCccccccchhhhhhHHHHHHhhccCcHHHHHHHHHHHHhCCCCCcccccHHHHHHHHHcCCChHHHHHHhhhCCC
Q 004480 143 ---GVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPR 219 (750)
Q Consensus 143 ---~~~p~~~~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 219 (750)
.-.|+. -..-+..+..+.+.-++++|+++|.+... .....++...|.
T Consensus 101 Y~E~Gspdt------AAmaleKAak~lenv~Pd~AlqlYqrala----------------vve~~dr~~ma~-------- 150 (308)
T KOG1585|consen 101 YVECGSPDT------AAMALEKAAKALENVKPDDALQLYQRALA----------------VVEEDDRDQMAF-------- 150 (308)
T ss_pred HHHhCCcch------HHHHHHHHHHHhhcCCHHHHHHHHHHHHH----------------HHhccchHHHHH--------
Confidence 112211 11112222233334555555555544322 111111222221
Q ss_pred CcchHHHHHHHHHhcCCHHHHHHHHHHHHh----CCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhCC---CCccH
Q 004480 220 ADILFCNFVREFGKKRDLVSALRAYDASKK----HLSSPNM-YICRTIIDVCGICGDYMKSRAIYEDLRSQN---VTLNI 291 (750)
Q Consensus 220 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~g---~~~~~ 291 (750)
..+......+.+..++.+|-..|.+-.. ..-.++. ..|-..|-.+....++..|...++.--+.+ -..|.
T Consensus 151 --el~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~ 228 (308)
T KOG1585|consen 151 --ELYGKCSRVLVRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDS 228 (308)
T ss_pred --HHHHHhhhHhhhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHH
Confidence 2233344555555666665544433211 1111222 234444445556667777777777643332 23455
Q ss_pred HHHHHHHHhhc-CChHHHHHHH
Q 004480 292 YVFNSLMNVNA-HDLKFTLEVY 312 (750)
Q Consensus 292 ~~~~~ll~~~~-~~~~~a~~~~ 312 (750)
.+...||.+|. |+.+.+..+.
T Consensus 229 r~lenLL~ayd~gD~E~~~kvl 250 (308)
T KOG1585|consen 229 RSLENLLTAYDEGDIEEIKKVL 250 (308)
T ss_pred HHHHHHHHHhccCCHHHHHHHH
Confidence 66666777655 5666555443
No 167
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=97.06 E-value=0.43 Score=48.16 Aligned_cols=457 Identities=13% Similarity=0.046 Sum_probs=245.6
Q ss_pred HHHhhcCChHHHHHHHHHHHHhc-CChhhHHhhhhHHHHHHHHHhhhhcCchhHHHHHHHHHHhcCCCccccccchhhhh
Q 004480 79 SKLAKDGRLEEFAMIVESVVVSE-GNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLELFDGSGFKL 157 (750)
Q Consensus 79 ~~~~~~g~~~~A~~~~~~~~~~~-~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~p~~~~~~~~~~~ 157 (750)
-.+.+++++.+|+.+|.+..+.- -.|..+.. --..++++.+|. ..+.+.-...+....+. .|+. .+..++..
T Consensus 14 f~Lqkq~~~~esEkifskI~~e~~~~~f~lke---Evl~grilnAff-l~nld~Me~~l~~l~~~--~~~s-~~l~LF~~ 86 (549)
T PF07079_consen 14 FILQKQKKFQESEKIFSKIYDEKESSPFLLKE---EVLGGRILNAFF-LNNLDLMEKQLMELRQQ--FGKS-AYLPLFKA 86 (549)
T ss_pred HHHHHHhhhhHHHHHHHHHHHHhhcchHHHHH---HHHhhHHHHHHH-HhhHHHHHHHHHHHHHh--cCCc-hHHHHHHH
Confidence 45678899999999999987652 23333321 112245555554 45566666666666653 2221 12233333
Q ss_pred hHHHHHHhhccCcHHHHHHHHHHHHhCCCCCcccccHHHHHHHHHcCCChHHHHHHhhhCCCCcchHHHHHHHHHhcCCH
Q 004480 158 LKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRADILFCNFVREFGKKRDL 237 (750)
Q Consensus 158 l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~l~~~~~~~g~~ 237 (750)
+ ..+ +.+.+..|++.+......--.......-.++-. .-++-..-+..+..+...|++
T Consensus 87 L----~~Y-~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~-----------------l~~df~l~~i~a~sLIe~g~f 144 (549)
T PF07079_consen 87 L----VAY-KQKEYRKALQALSVWKEQIKGTESPWLDTNIQQ-----------------LFSDFFLDEIEAHSLIETGRF 144 (549)
T ss_pred H----HHH-HhhhHHHHHHHHHHHHhhhcccccchhhhhHHH-----------------HhhHHHHHHHHHHHHHhcCCc
Confidence 3 222 378899998888765543100111110000000 001112334467777888999
Q ss_pred HHHHHHHHHHHhCCCC----CCHHHHHHHHHHHHhcC--------C-------HHHHHHHHHHHHhC------CCCccHH
Q 004480 238 VSALRAYDASKKHLSS----PNMYICRTIIDVCGICG--------D-------YMKSRAIYEDLRSQ------NVTLNIY 292 (750)
Q Consensus 238 ~~A~~~~~~~~~~~~~----~~~~~~~~li~~~~~~g--------~-------~~~A~~~~~~m~~~------g~~~~~~ 292 (750)
.+++.+++++...-.+ =+..+|+.++-.+++.= . ++.+.-...+|... .+-|...
T Consensus 145 ~EgR~iLn~i~~~llkrE~~w~~d~yd~~vlmlsrSYfLEl~e~~s~dl~pdyYemilfY~kki~~~d~~~Y~k~~peee 224 (549)
T PF07079_consen 145 SEGRAILNRIIERLLKRECEWNSDMYDRAVLMLSRSYFLELKESMSSDLYPDYYEMILFYLKKIHAFDQRPYEKFIPEEE 224 (549)
T ss_pred chHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHhHHHHHHHHHhcccccChHHHHHHHHHHHHHHHHhhchHHhhCcHHH
Confidence 9998888887764332 46777777555554431 1 12222222222211 2334444
Q ss_pred HHHHHHHh-hc---CChHHHHHHHHHHHHcCCCCCHh-hHHHHHHHHHHcCChHHHHHHHHHHHHhhhcCCCccCHHHHH
Q 004480 293 VFNSLMNV-NA---HDLKFTLEVYKNMQKLGVMADMA-SYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYS 367 (750)
Q Consensus 293 ~~~~ll~~-~~---~~~~~a~~~~~~m~~~g~~~~~~-~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~g~~~~~~~~~~ 367 (750)
.+..++.- +. ....--.+++..-...-+.|+-. +...|+..+.+ +.+++..+-+.+....-...-+.=..++.
T Consensus 225 L~s~imqhlfi~p~e~l~~~mq~l~~We~~yv~p~~~LVi~~L~~~f~~--~~e~~~~~ce~ia~~~i~~Lke~li~~F~ 302 (549)
T PF07079_consen 225 LFSTIMQHLFIVPKERLPPLMQILENWENFYVHPNYDLVIEPLKQQFMS--DPEQVGHFCEAIASSKIEKLKEELIDRFG 302 (549)
T ss_pred HHHHHHHHHHhCCHhhccHHHHHHHHHHhhccCCchhHHHHHHHHHHhc--ChHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 44444442 11 12333344555444444556533 33344444444 55555555554443110000011245688
Q ss_pred HHHHHHHhccCHHHHHHHHHHHHHCCCCCCHHHH-------HHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCCHHHH
Q 004480 368 TIVKVFADAKWWQMALKVKEDMLSAGVTPNTITW-------SSLINACAN----AGLVEQAMHLFEEMLQAGCEPNSQCC 436 (750)
Q Consensus 368 ~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~-------~~li~~~~~----~g~~~~a~~~~~~m~~~~~~p~~~~~ 436 (750)
.++....+.++...|.+.+.-+... .|+...- ..+-+..|. ..+...-+.++......++..- ...
T Consensus 303 ~~Ls~~Vk~~~T~~a~q~l~lL~~l--dp~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~DiDrq-QLv 379 (549)
T PF07079_consen 303 NLLSFKVKQVQTEEAKQYLALLKIL--DPRISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSYDIDRQ-QLV 379 (549)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHhc--CCcchhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhcccHH-HHH
Confidence 8888889999999999999887765 3333321 122222331 1123334445555554432211 111
Q ss_pred HHHHH---HHHHhCC-hHHHHHHHHHHhhcccccccCCCCCCchhhhhhhhhhhcccccCCCCccCCCccccccccCCCC
Q 004480 437 NILLQ---ACVEACQ-FDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFK 512 (750)
Q Consensus 437 ~~ll~---~~~~~g~-~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 512 (750)
..|+. -+-+.|. -++|.++++.+..-. .
T Consensus 380 h~L~~~Ak~lW~~g~~dekalnLLk~il~ft------------------------------------------------~ 411 (549)
T PF07079_consen 380 HYLVFGAKHLWEIGQCDEKALNLLKLILQFT------------------------------------------------N 411 (549)
T ss_pred HHHHHHHHHHHhcCCccHHHHHHHHHHHHhc------------------------------------------------c
Confidence 22222 2334454 788888888766431 1
Q ss_pred ccHHHHHHHHH----HHHh-----cHHHHHHHHHHHHHcCCCCCH----HHHHHHHHH--HHcCCCHHHHHHHHHHHHHC
Q 004480 513 PTTTTYNILMK----ACCT-----DYYRVKALMNEMRTVGLSPNH----ISWTILIDA--CGGSGNVEGALQILKIMRED 577 (750)
Q Consensus 513 p~~~~~~~li~----~~~~-----~~~~a~~l~~~m~~~~~~p~~----~~~~~li~~--~~~~g~~~~A~~~~~~m~~~ 577 (750)
-|...-|.+.. +|.+ ...+-..+-+-+.+.|+.|-. ..-|.|-++ +...|++.++.-.-..+.+
T Consensus 412 yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~LaDAEyLysqgey~kc~~ys~WL~~- 490 (549)
T PF07079_consen 412 YDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIANFLADAEYLYSQGEYHKCYLYSSWLTK- 490 (549)
T ss_pred ccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHH-
Confidence 23333333222 2322 234555555666677887743 344555544 4678999999887777766
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 004480 578 GMSPDVVAYTTAIKVCVRSKRLKQAFSLFEEMKHYQIQPNLVTYITL 624 (750)
Q Consensus 578 g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l 624 (750)
+.|++.+|..+.-......++++|..+++.+ .|+..++++=
T Consensus 491 -iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~L-----P~n~~~~dsk 531 (549)
T PF07079_consen 491 -IAPSPQAYRLLGLCLMENKRYQEAWEYLQKL-----PPNERMRDSK 531 (549)
T ss_pred -hCCcHHHHHHHHHHHHHHhhHHHHHHHHHhC-----CCchhhHHHH
Confidence 6899999999999888999999999999876 6777776653
No 168
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.04 E-value=0.0018 Score=47.39 Aligned_cols=59 Identities=17% Similarity=0.143 Sum_probs=47.4
Q ss_pred HHHHHHhhcCChHHHHHHHHHHHHhcCChhhHHhhhhHHHHHHHHHhhhhcCchhHHHHHHHHHHhc
Q 004480 76 DMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNEL 142 (750)
Q Consensus 76 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~ 142 (750)
.++..+.+.|++++|+..|+++++. .|.....+.. +...+...|++++|+..|+++++.
T Consensus 2 ~~a~~~~~~g~~~~A~~~~~~~l~~--~P~~~~a~~~------lg~~~~~~g~~~~A~~~~~~a~~~ 60 (65)
T PF13432_consen 2 ALARALYQQGDYDEAIAAFEQALKQ--DPDNPEAWYL------LGRILYQQGRYDEALAYYERALEL 60 (65)
T ss_dssp HHHHHHHHCTHHHHHHHHHHHHHCC--STTHHHHHHH------HHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred hHHHHHHHcCCHHHHHHHHHHHHHH--CCCCHHHHHH------HHHHHHHcCCHHHHHHHHHHHHHH
Confidence 4577889999999999999999999 5665544444 444488999999999999999874
No 169
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=97.03 E-value=0.039 Score=51.46 Aligned_cols=185 Identities=10% Similarity=-0.007 Sum_probs=106.0
Q ss_pred CcchhhhHHHHHHHHhhcCChHHHHHHHHHHHHhcCChhhHHhhhhHHHHHHHHHhhhhcCchhHHHHHHHHHHhcCCCc
Q 004480 67 LSSRNDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAP 146 (750)
Q Consensus 67 p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~p 146 (750)
|+.+...+...+..+...|++++|+..|+.+....+... ....+.-.++.++.+.|+++.|...+++.++. .|
T Consensus 1 p~~~~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~-----~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~--yP 73 (203)
T PF13525_consen 1 PEDTAEALYQKALEALQQGDYEEAIKLFEKLIDRYPNSP-----YAPQAQLMLAYAYYKQGDYEEAIAAYERFIKL--YP 73 (203)
T ss_dssp ----HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTST-----THHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH---T
T ss_pred CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCh-----HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CC
Confidence 334456667788888999999999999999998843211 12344456777889999999999999999985 44
Q ss_pred cccccchhhhhhHHHHHH----------hhccCcHHHHHHHHHHHHhCCCCCcccccHHHHHHHHHcCCChHHHHHHhhh
Q 004480 147 LELFDGSGFKLLKNECQR----------LLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACI 216 (750)
Q Consensus 147 ~~~~~~~~~~~l~~~~~~----------~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 216 (750)
+..... ...+..+.+. ..+.+...+|+..|+.++..- |++.. ..+|......
T Consensus 74 ~~~~~~--~A~Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~y--P~S~y--------------~~~A~~~l~~ 135 (203)
T PF13525_consen 74 NSPKAD--YALYMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRY--PNSEY--------------AEEAKKRLAE 135 (203)
T ss_dssp T-TTHH--HHHHHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH---TTSTT--------------HHHHHHHHHH
T ss_pred CCcchh--hHHHHHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHC--cCchH--------------HHHHHHHHHH
Confidence 433111 1111211111 112344557777777777644 54432 1222221111
Q ss_pred CCCC-cchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC--CHHHHHHHHHHHHhcCCHHHHH
Q 004480 217 VPRA-DILFCNFVREFGKKRDLVSALRAYDASKKHLSSP--NMYICRTIIDVCGICGDYMKSR 276 (750)
Q Consensus 217 ~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~A~ 276 (750)
+... ..--..++..|.+.|.+..|..-++.+++.-+.. ...+...++.+|.+.|..+.+.
T Consensus 136 l~~~la~~e~~ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a~ 198 (203)
T PF13525_consen 136 LRNRLAEHELYIARFYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAAD 198 (203)
T ss_dssp HHHHHHHHHHHHHHHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHHH
T ss_pred HHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHHH
Confidence 1000 0112236778999999999999999988753221 1236677778888888877443
No 170
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.02 E-value=0.015 Score=57.22 Aligned_cols=129 Identities=12% Similarity=0.104 Sum_probs=75.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCC-CCccHHHHHHHHHhh-cCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHH
Q 004480 257 YICRTIIDVCGICGDYMKSRAIYEDLRSQN-VTLNIYVFNSLMNVN-AHDLKFTLEVYKNMQKLGVMADMASYNILLKAC 334 (750)
Q Consensus 257 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~~~~~~~~~ll~~~-~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~ 334 (750)
.+|-.+++...+.+..+.|..+|.+..+.+ +..+++...++|..+ .++.+.|..+|+...+. +..+...|...++.+
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~l 80 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDFL 80 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHH
Confidence 356667777777777777777777776543 335555555666554 34555566666666554 345566666777777
Q ss_pred HHcCChHHHHHHHHHHHHhhhcCCCccCH---HHHHHHHHHHHhccCHHHHHHHHHHHHH
Q 004480 335 CLAGNTVLAQEIYGEVKHLEAKGVLKLDV---FTYSTIVKVFADAKWWQMALKVKEDMLS 391 (750)
Q Consensus 335 ~~~g~~~~A~~~~~~~~~~~~~g~~~~~~---~~~~~li~~~~~~g~~~~a~~~~~~m~~ 391 (750)
.+.++.+.|..+|+..... +.++. ..|...+..=.+.|+++.+.++.+.+.+
T Consensus 81 ~~~~d~~~aR~lfer~i~~-----l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~ 135 (280)
T PF05843_consen 81 IKLNDINNARALFERAISS-----LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEE 135 (280)
T ss_dssp HHTT-HHHHHHHHHHHCCT-----SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHH
T ss_pred HHhCcHHHHHHHHHHHHHh-----cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 7777777777777766541 22221 3555555555556666666666655554
No 171
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.02 E-value=0.012 Score=46.58 Aligned_cols=95 Identities=20% Similarity=0.149 Sum_probs=73.6
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHhhhcCCCccCHHHHHHHHHHHHhccCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 004480 327 YNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLIN 406 (750)
Q Consensus 327 ~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~g~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~ 406 (750)
+..+...+...|++++|...++.+.+. .+.+...+..+...+...+++++|.+.++...... +.+..++..+..
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~ 76 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALEL-----DPDNADAYYNLAAAYYKLGKYEEALEDYEKALELD-PDNAKAYYNLGL 76 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhc-----CCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CcchhHHHHHHH
Confidence 455667778889999999999888762 12334667778888888899999999999888764 334567788888
Q ss_pred HHHhcCCHHHHHHHHHHHHHc
Q 004480 407 ACANAGLVEQAMHLFEEMLQA 427 (750)
Q Consensus 407 ~~~~~g~~~~a~~~~~~m~~~ 427 (750)
.+...|+++.|...+....+.
T Consensus 77 ~~~~~~~~~~a~~~~~~~~~~ 97 (100)
T cd00189 77 AYYKLGKYEEALEAYEKALEL 97 (100)
T ss_pred HHHHHHhHHHHHHHHHHHHcc
Confidence 888999999999988887653
No 172
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=96.99 E-value=0.0047 Score=58.31 Aligned_cols=97 Identities=9% Similarity=0.041 Sum_probs=69.6
Q ss_pred HhhccCcHHHHHHHHHHHHhCCCCCcccccHHHHHHHHHcCCChHHHHHHhhhC----CCCcchHHHHHHHHHhcCCHHH
Q 004480 164 RLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIV----PRADILFCNFVREFGKKRDLVS 239 (750)
Q Consensus 164 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~----~~~~~~~~~l~~~~~~~g~~~~ 239 (750)
.+.+.+++.+|+..|.+.+... |.+..+|..-..+|.+.|.++.|++-.+.. |....+|..|..+|...|++++
T Consensus 90 ~~m~~~~Y~eAv~kY~~AI~l~--P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~ 167 (304)
T KOG0553|consen 90 KLMKNKDYQEAVDKYTEAIELD--PTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEE 167 (304)
T ss_pred HHHHhhhHHHHHHHHHHHHhcC--CCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHH
Confidence 3444789999999999988844 888888888888888888777777765543 4445677777778888888888
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHH
Q 004480 240 ALRAYDASKKHLSSPNMYICRTIID 264 (750)
Q Consensus 240 A~~~~~~~~~~~~~~~~~~~~~li~ 264 (750)
|++.|.+.++ +.|+-.+|-.=+.
T Consensus 168 A~~aykKaLe--ldP~Ne~~K~nL~ 190 (304)
T KOG0553|consen 168 AIEAYKKALE--LDPDNESYKSNLK 190 (304)
T ss_pred HHHHHHhhhc--cCCCcHHHHHHHH
Confidence 8877777776 4565544444333
No 173
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=96.98 E-value=0.019 Score=56.58 Aligned_cols=145 Identities=10% Similarity=0.074 Sum_probs=91.1
Q ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHhhcccccccCCCCCCchhhhhhhhhhhcccccCCCCccCCCccccccccCCCCc
Q 004480 434 QCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKP 513 (750)
Q Consensus 434 ~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 513 (750)
.+|..++...-+.+..+.|..+|.+....+ .+..
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~----------------------------------------------~~~~ 35 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDK----------------------------------------------RCTY 35 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC----------------------------------------------CS-T
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCC----------------------------------------------CCCH
Confidence 356677777777777788888887765322 1345
Q ss_pred cHHHHHHHHHHHH-hcHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCH---HHHHHH
Q 004480 514 TTTTYNILMKACC-TDYYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQILKIMREDGMSPDV---VAYTTA 589 (750)
Q Consensus 514 ~~~~~~~li~~~~-~~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~---~~~~~l 589 (750)
++....+.+.-++ ++.+.|..+|+...+. +..+...|...++.+.+.|+.+.|..+|++.... +.++. ..|...
T Consensus 36 ~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~l~~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~ 113 (280)
T PF05843_consen 36 HVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDFLIKLNDINNARALFERAISS-LPKEKQSKKIWKKF 113 (280)
T ss_dssp HHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHH
Confidence 6666666666654 4566677787777765 4456666777777777778888888888877754 22222 377777
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 004480 590 IKVCVRSKRLKQAFSLFEEMKHYQIQPNLVTYITLLRAR 628 (750)
Q Consensus 590 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~ 628 (750)
+.-=.+.|+++.+.++.+++.+ ..|+...+..+++-|
T Consensus 114 i~fE~~~Gdl~~v~~v~~R~~~--~~~~~~~~~~f~~ry 150 (280)
T PF05843_consen 114 IEFESKYGDLESVRKVEKRAEE--LFPEDNSLELFSDRY 150 (280)
T ss_dssp HHHHHHHS-HHHHHHHHHHHHH--HTTTS-HHHHHHCCT
T ss_pred HHHHHHcCCHHHHHHHHHHHHH--HhhhhhHHHHHHHHh
Confidence 7777777787777777777776 345544444444433
No 174
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=96.93 E-value=0.0027 Score=48.57 Aligned_cols=70 Identities=14% Similarity=0.027 Sum_probs=55.0
Q ss_pred hhhHHHHHHHHhhcCChHHHHHHHHHHHHhcCChhhHHhhhhHHHHHHHHHhhhhcCchhHHHHHHHHHHh
Q 004480 71 NDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNE 141 (750)
Q Consensus 71 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~ 141 (750)
...+..++..+...|++++|+..|+++++.. ....-........+.++...+...|++++|++.+++..+
T Consensus 5 a~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 5 ANAYNNLARVYRELGRYDEALDYYEKALDIE-EQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHH-HHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH-HHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 6788999999999999999999999998772 111112223356677888889999999999999999875
No 175
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=96.92 E-value=0.57 Score=49.72 Aligned_cols=135 Identities=10% Similarity=0.027 Sum_probs=85.2
Q ss_pred hhhcCchhHHHHHHHHHHhcCCCccccccchhhhhhHHHHHHhhccCcHHHHHHHHHHHHhCCCCCcccccHHHHHHHHH
Q 004480 123 SIREGRIDCVVGVLKKLNELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCV 202 (750)
Q Consensus 123 ~~~~g~~~~A~~~l~~~~~~~~~p~~~~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 202 (750)
+.+.|+|-.+.++++.-- -..|.......++.+.. .+++...+++|.++|..-.. ....+..+.
T Consensus 770 r~klgDwfrV~qL~r~g~---~d~dD~~~e~A~r~ig~---~fa~~~~We~A~~yY~~~~~----------~e~~~ecly 833 (1189)
T KOG2041|consen 770 RKKLGDWFRVYQLIRNGG---SDDDDEGKEDAFRNIGE---TFAEMMEWEEAAKYYSYCGD----------TENQIECLY 833 (1189)
T ss_pred HHhhhhHHHHHHHHHccC---CCcchHHHHHHHHHHHH---HHHHHHHHHHHHHHHHhccc----------hHhHHHHHH
Confidence 445666666555554221 12222212222333322 33446677888888775221 234566666
Q ss_pred cCCChHHHHHHhhhCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 004480 203 NKPDVNLAIRYACIVPRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDL 282 (750)
Q Consensus 203 ~~~~~~~A~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 282 (750)
+...+++-+.+...+|.+....-.+.+++.+.|.-++|.+.|-+... |. +-+..|...++|.+|.++-+..
T Consensus 834 ~le~f~~LE~la~~Lpe~s~llp~~a~mf~svGMC~qAV~a~Lr~s~----pk-----aAv~tCv~LnQW~~avelaq~~ 904 (1189)
T KOG2041|consen 834 RLELFGELEVLARTLPEDSELLPVMADMFTSVGMCDQAVEAYLRRSL----PK-----AAVHTCVELNQWGEAVELAQRF 904 (1189)
T ss_pred HHHhhhhHHHHHHhcCcccchHHHHHHHHHhhchHHHHHHHHHhccC----cH-----HHHHHHHHHHHHHHHHHHHHhc
Confidence 77777777788888899999999999999999999999988865432 32 2345677778888888776643
No 176
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=96.92 E-value=0.0019 Score=50.34 Aligned_cols=82 Identities=16% Similarity=0.190 Sum_probs=36.2
Q ss_pred cCChHHHHHHHHHHHHhhhcCCCccCHHHHHHHHHHHHhccCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 004480 337 AGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQ 416 (750)
Q Consensus 337 ~g~~~~A~~~~~~~~~~~~~g~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~ 416 (750)
.|+++.|..+++++.+.... .++...+..+..+|.+.|++++|..+++. ...+. .+......+..+|.+.|++++
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~---~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~-~~~~~~~l~a~~~~~l~~y~e 76 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPT---NPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDP-SNPDIHYLLARCLLKLGKYEE 76 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCG---THHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHH-CHHHHHHHHHHHHHHTT-HHH
T ss_pred CccHHHHHHHHHHHHHHCCC---ChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCC-CCHHHHHHHHHHHHHhCCHHH
Confidence 35555555555555552100 01223333355555555555555555555 21111 112222333555555555555
Q ss_pred HHHHHHH
Q 004480 417 AMHLFEE 423 (750)
Q Consensus 417 a~~~~~~ 423 (750)
|++.|++
T Consensus 77 Ai~~l~~ 83 (84)
T PF12895_consen 77 AIKALEK 83 (84)
T ss_dssp HHHHHHH
T ss_pred HHHHHhc
Confidence 5555543
No 177
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=96.90 E-value=0.38 Score=50.49 Aligned_cols=180 Identities=14% Similarity=0.165 Sum_probs=100.4
Q ss_pred HHHHhcC--CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCccHHHHHHHHHhhcCChH
Q 004480 229 REFGKKR--DLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLK 306 (750)
Q Consensus 229 ~~~~~~g--~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~ 306 (750)
++|.+.+ .+-+.+--++++.++|-.|+... +...|+-.|++.+|-++|.+- |.-.
T Consensus 606 kAY~rVRdl~~L~li~EL~~~k~rge~P~~iL---lA~~~Ay~gKF~EAAklFk~~--------------------G~en 662 (1081)
T KOG1538|consen 606 KAYIRVRDLRYLELISELEERKKRGETPNDLL---LADVFAYQGKFHEAAKLFKRS--------------------GHEN 662 (1081)
T ss_pred HHHHHHhccHHHHHHHHHHHHHhcCCCchHHH---HHHHHHhhhhHHHHHHHHHHc--------------------Cchh
Confidence 3444433 34455556778888888787664 344566788899988888753 2234
Q ss_pred HHHHHHHHHHHcCCCCCHhhHHHHHHHHHHcCChHHHHHHHHHHHHhhhcCCCccCHHHHHHHHHHHHhccCHHHHH---
Q 004480 307 FTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMAL--- 383 (750)
Q Consensus 307 ~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~g~~~~~~~~~~~li~~~~~~g~~~~a~--- 383 (750)
.|+++|.+|.-. .+..-+...|..++-..+.++-.+...+- -+| .+....+...|+.++|.
T Consensus 663 RAlEmyTDlRMF----------D~aQE~~~~g~~~eKKmL~RKRA~WAr~~-keP-----kaAAEmLiSaGe~~KAi~i~ 726 (1081)
T KOG1538|consen 663 RALEMYTDLRMF----------DYAQEFLGSGDPKEKKMLIRKRADWARNI-KEP-----KAAAEMLISAGEHVKAIEIC 726 (1081)
T ss_pred hHHHHHHHHHHH----------HHHHHHhhcCChHHHHHHHHHHHHHhhhc-CCc-----HHHHHHhhcccchhhhhhhh
Confidence 566666555421 13334445555554444443322211110 011 11222233344444443
Q ss_pred ----------HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCChHHHH
Q 004480 384 ----------KVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAF 453 (750)
Q Consensus 384 ----------~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~ 453 (750)
++-.++- ..+..+...+...+.+...+..|-++|..|-+ ...+++.....++|++|.
T Consensus 727 ~d~gW~d~lidI~rkld----~~ere~l~~~a~ylk~l~~~gLAaeIF~k~gD---------~ksiVqlHve~~~W~eAF 793 (1081)
T KOG1538|consen 727 GDHGWVDMLIDIARKLD----KAEREPLLLCATYLKKLDSPGLAAEIFLKMGD---------LKSLVQLHVETQRWDEAF 793 (1081)
T ss_pred hcccHHHHHHHHHhhcc----hhhhhHHHHHHHHHhhccccchHHHHHHHhcc---------HHHHhhheeecccchHhH
Confidence 3333322 12445555566666677778888888888843 345677788889999999
Q ss_pred HHHHHHh
Q 004480 454 RLFRSWT 460 (750)
Q Consensus 454 ~~~~~~~ 460 (750)
++-++..
T Consensus 794 alAe~hP 800 (1081)
T KOG1538|consen 794 ALAEKHP 800 (1081)
T ss_pred hhhhhCc
Confidence 8877644
No 178
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=96.90 E-value=0.55 Score=46.89 Aligned_cols=111 Identities=16% Similarity=0.172 Sum_probs=85.3
Q ss_pred HhhHHHHHHHHHHcCChHHHHHHHHHHHHhhhcCCCccCHHHHHHHHHHHHhccCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 004480 324 MASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSS 403 (750)
Q Consensus 324 ~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~g~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ 403 (750)
..+.+..|.-+...|+...|.++..+.. -||..-|-..+.+|+..++|++-.++-.. +-++..|..
T Consensus 177 ~~Sl~~Ti~~li~~~~~k~A~kl~k~Fk--------v~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyep 242 (319)
T PF04840_consen 177 GLSLNDTIRKLIEMGQEKQAEKLKKEFK--------VPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEP 242 (319)
T ss_pred cCCHHHHHHHHHHCCCHHHHHHHHHHcC--------CcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHH
Confidence 3456666777888899888888877664 37888899999999999999887775432 124477889
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCChHHHHHHHHH
Q 004480 404 LINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRS 458 (750)
Q Consensus 404 li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~ 458 (750)
++.+|.+.|+..+|..+...+ .+..-+..|.+.|++.+|.+.-.+
T Consensus 243 Fv~~~~~~~~~~eA~~yI~k~----------~~~~rv~~y~~~~~~~~A~~~A~~ 287 (319)
T PF04840_consen 243 FVEACLKYGNKKEASKYIPKI----------PDEERVEMYLKCGDYKEAAQEAFK 287 (319)
T ss_pred HHHHHHHCCCHHHHHHHHHhC----------ChHHHHHHHHHCCCHHHHHHHHHH
Confidence 999999999999999888873 235567788899999988776443
No 179
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=96.89 E-value=0.004 Score=46.23 Aligned_cols=64 Identities=11% Similarity=0.107 Sum_probs=53.8
Q ss_pred hhhHHHHHHHHhhcCChHHHHHHHHHHHHhcCChhhHHhhhhHHHHHHHHHhhhhcC-chhHHHHHHHHHHhc
Q 004480 71 NDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREG-RIDCVVGVLKKLNEL 142 (750)
Q Consensus 71 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g-~~~~A~~~l~~~~~~ 142 (750)
+..|..++..+...|++++|+..|+++++. +|+.... +.++...+...| ++++|++.++++++.
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~--~p~~~~~------~~~~g~~~~~~~~~~~~A~~~~~~al~l 67 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIEL--DPNNAEA------YYNLGLAYMKLGKDYEEAIEDFEKALKL 67 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHH--STTHHHH------HHHHHHHHHHTTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCHHH------HHHHHHHHHHhCccHHHHHHHHHHHHHc
Confidence 567889999999999999999999999999 6765544 344555588999 799999999999873
No 180
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=96.88 E-value=0.022 Score=54.28 Aligned_cols=113 Identities=10% Similarity=0.138 Sum_probs=80.9
Q ss_pred hhhccccCCcchhhhHHHHHHHHhhcCChHHHHHHHHHHHHhcCChhhHHhhhhHHHHHHHHHhhhhcCchhHHHHHHHH
Q 004480 59 LLSTVRRDLSSRNDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKK 138 (750)
Q Consensus 59 ~~~~l~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~ 138 (750)
+...++.+|++ ..-|..|+..|...|++++|...|..+.+. .|++...... +...+..-.-...-.++..+|++
T Consensus 145 Le~~L~~nP~d-~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL--~g~n~~~~~g---~aeaL~~~a~~~~ta~a~~ll~~ 218 (287)
T COG4235 145 LETHLQQNPGD-AEGWDLLGRAYMALGRASDALLAYRNALRL--AGDNPEILLG---LAEALYYQAGQQMTAKARALLRQ 218 (287)
T ss_pred HHHHHHhCCCC-chhHHHHHHHHHHhcchhHHHHHHHHHHHh--CCCCHHHHHH---HHHHHHHhcCCcccHHHHHHHHH
Confidence 54558999999 999999999999999999999999999998 4444333222 22222223344455589999999
Q ss_pred HHhcCCCccccccchhhhhhHHHHHHhhccCcHHHHHHHHHHHHhCC
Q 004480 139 LNELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFR 185 (750)
Q Consensus 139 ~~~~~~~p~~~~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~ 185 (750)
+++ ..|++. .....|.. .+...|++.+|...++.|++..
T Consensus 219 al~--~D~~~i---ral~lLA~---~afe~g~~~~A~~~Wq~lL~~l 257 (287)
T COG4235 219 ALA--LDPANI---RALSLLAF---AAFEQGDYAEAAAAWQMLLDLL 257 (287)
T ss_pred HHh--cCCccH---HHHHHHHH---HHHHcccHHHHHHHHHHHHhcC
Confidence 997 566554 23333333 3444899999999999999865
No 181
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=96.87 E-value=0.029 Score=46.54 Aligned_cols=99 Identities=13% Similarity=0.073 Sum_probs=67.8
Q ss_pred HHHHHHHhhcCChHHHHHHHHHHHHhcCChhhHHhhhhHHHHHHHHHhhhhcCchhHHHHHHHHHHhcCCCccccccchh
Q 004480 75 ADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLELFDGSG 154 (750)
Q Consensus 75 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~p~~~~~~~~ 154 (750)
..+..++-..|+.++|+.+|++.++.|.+... ....+..+.+.+...|++++|+.+|++.... .|+..... .
T Consensus 5 ~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~-----~~~a~i~lastlr~LG~~deA~~~L~~~~~~--~p~~~~~~-~ 76 (120)
T PF12688_consen 5 YELAWAHDSLGREEEAIPLYRRALAAGLSGAD-----RRRALIQLASTLRNLGRYDEALALLEEALEE--FPDDELNA-A 76 (120)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCchH-----HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCccccH-H
Confidence 45667777889999999999999998755432 1345557778889999999999999998874 34322111 1
Q ss_pred hhhhHHHHHHhhccCcHHHHHHHHHHHHh
Q 004480 155 FKLLKNECQRLLDSGEVEMFVGLMEVLEE 183 (750)
Q Consensus 155 ~~~l~~~~~~~~~~g~~~~A~~~~~~~~~ 183 (750)
+..+.. ..+...|+.++|++.+-..+.
T Consensus 77 l~~f~A--l~L~~~gr~~eAl~~~l~~la 103 (120)
T PF12688_consen 77 LRVFLA--LALYNLGRPKEALEWLLEALA 103 (120)
T ss_pred HHHHHH--HHHHHCCCHHHHHHHHHHHHH
Confidence 222211 134447999999988766554
No 182
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=96.83 E-value=0.0026 Score=49.52 Aligned_cols=81 Identities=20% Similarity=0.317 Sum_probs=56.8
Q ss_pred ccCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCChHHHHH
Q 004480 376 AKWWQMALKVKEDMLSAGVT-PNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFR 454 (750)
Q Consensus 376 ~g~~~~a~~~~~~m~~~g~~-p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~ 454 (750)
.|+++.|+.+++++.+.... ++...+-.+..++.+.|++++|..+++. .+.+ ..+....-.+..+|.+.|++++|.+
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~-~~~~~~~~l~a~~~~~l~~y~eAi~ 79 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLD-PSNPDIHYLLARCLLKLGKYEEAIK 79 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHH-HCHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCC-CCCHHHHHHHHHHHHHhCCHHHHHH
Confidence 57889999999999876432 2444555588899999999999999988 3222 1223444455778889999999998
Q ss_pred HHHH
Q 004480 455 LFRS 458 (750)
Q Consensus 455 ~~~~ 458 (750)
.+++
T Consensus 80 ~l~~ 83 (84)
T PF12895_consen 80 ALEK 83 (84)
T ss_dssp HHHH
T ss_pred HHhc
Confidence 8875
No 183
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=96.83 E-value=0.011 Score=55.92 Aligned_cols=83 Identities=14% Similarity=-0.031 Sum_probs=45.8
Q ss_pred hhcCchhHHHHHHHHHHhcCCCccccccchhhhhhHHHHHHhhccCcHHHHHHHHHHHHhCCCCCcccccHHHHHHHHHc
Q 004480 124 IREGRIDCVVGVLKKLNELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVN 203 (750)
Q Consensus 124 ~~~g~~~~A~~~l~~~~~~~~~p~~~~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 203 (750)
.+.++|.+|+..|.++++ +.|...++ +-+-++.+.+.|+++.|++-.+..+..+ |.....|..|+.+|..
T Consensus 92 m~~~~Y~eAv~kY~~AI~--l~P~nAVy------ycNRAAAy~~Lg~~~~AVkDce~Al~iD--p~yskay~RLG~A~~~ 161 (304)
T KOG0553|consen 92 MKNKDYQEAVDKYTEAIE--LDPTNAVY------YCNRAAAYSKLGEYEDAVKDCESALSID--PHYSKAYGRLGLAYLA 161 (304)
T ss_pred HHhhhHHHHHHHHHHHHh--cCCCcchH------HHHHHHHHHHhcchHHHHHHHHHHHhcC--hHHHHHHHHHHHHHHc
Confidence 356666666666666665 44433311 1122233344566666666666655533 5555666666666666
Q ss_pred CCChHHHHHHhhh
Q 004480 204 KPDVNLAIRYACI 216 (750)
Q Consensus 204 ~~~~~~A~~~~~~ 216 (750)
.|++.+|++.|++
T Consensus 162 ~gk~~~A~~aykK 174 (304)
T KOG0553|consen 162 LGKYEEAIEAYKK 174 (304)
T ss_pred cCcHHHHHHHHHh
Confidence 6666666666554
No 184
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=96.80 E-value=0.45 Score=45.61 Aligned_cols=60 Identities=8% Similarity=-0.023 Sum_probs=38.1
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH--HHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 004480 226 NFVREFGKKRDLVSALRAYDASKKHLSSPNMY--ICRTIIDVCGICGDYMKSRAIYEDLRSQ 285 (750)
Q Consensus 226 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~--~~~~li~~~~~~g~~~~A~~~~~~m~~~ 285 (750)
.....+...|++++|.+.|+.+....+.+... ..-.+..++.+.+++++|...|++..+.
T Consensus 37 ~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~ 98 (243)
T PRK10866 37 ATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRL 98 (243)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence 34445556778888888888877644332211 2234556677778888888888877765
No 185
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=96.80 E-value=0.21 Score=43.78 Aligned_cols=125 Identities=15% Similarity=0.117 Sum_probs=65.5
Q ss_pred HHHHhhhhcCchhHHHHHHHHHHhcCCCccccccchhhhhhHHHHHHhhccCcHHHHHHHHHHHHhCCCCCcccccHHHH
Q 004480 118 SGIVKSIREGRIDCVVGVLKKLNELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRI 197 (750)
Q Consensus 118 ~~~~~~~~~g~~~~A~~~l~~~~~~~~~p~~~~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l 197 (750)
.+..++...|++.+|...|++... |+-.++. ..++.........+++..|...++.+-+.+..-..
T Consensus 94 rLa~al~elGr~~EA~~hy~qals-G~fA~d~------a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~------- 159 (251)
T COG4700 94 RLANALAELGRYHEAVPHYQQALS-GIFAHDA------AMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRS------- 159 (251)
T ss_pred HHHHHHHHhhhhhhhHHHHHHHhc-cccCCCH------HHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCC-------
Confidence 345556677788888887777776 4433222 22333333344467777777777776654411112
Q ss_pred HHHHHcCCChHHHHHHhhhCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 004480 198 VQLCVNKPDVNLAIRYACIVPRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRA 277 (750)
Q Consensus 198 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 277 (750)
+.....+...|...|++.+|+..|+.....-+.|....|- ...+.++|+.+++..
T Consensus 160 -----------------------pd~~Ll~aR~laa~g~~a~Aesafe~a~~~ypg~~ar~~Y--~e~La~qgr~~ea~a 214 (251)
T COG4700 160 -----------------------PDGHLLFARTLAAQGKYADAESAFEVAISYYPGPQARIYY--AEMLAKQGRLREANA 214 (251)
T ss_pred -----------------------CCchHHHHHHHHhcCCchhHHHHHHHHHHhCCCHHHHHHH--HHHHHHhcchhHHHH
Confidence 2333444555666666666666666666543323333222 222345565555544
Q ss_pred HHHH
Q 004480 278 IYED 281 (750)
Q Consensus 278 ~~~~ 281 (750)
-+.+
T Consensus 215 q~~~ 218 (251)
T COG4700 215 QYVA 218 (251)
T ss_pred HHHH
Confidence 3333
No 186
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=96.76 E-value=0.047 Score=55.89 Aligned_cols=102 Identities=13% Similarity=0.097 Sum_probs=72.0
Q ss_pred HHHHHHcCChHHHHHHHHHHHHhhhcCCCccCHHHHHHHHHHHHhccCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 004480 331 LKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACAN 410 (750)
Q Consensus 331 l~~~~~~g~~~~A~~~~~~~~~~~~~g~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~ 410 (750)
...+...|++++|...|+++.++ -+.+...|..+..+|.+.|++++|+..+++.+.... .+...|..+..+|..
T Consensus 9 a~~a~~~~~~~~Ai~~~~~Al~~-----~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P-~~~~a~~~lg~~~~~ 82 (356)
T PLN03088 9 AKEAFVDDDFALAVDLYTQAIDL-----DPNNAELYADRAQANIKLGNFTEAVADANKAIELDP-SLAKAYLRKGTACMK 82 (356)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHh-----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-CCHHHHHHHHHHHHH
Confidence 34556778888888888887763 233556677777788888888888888888877642 356677778888888
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 004480 411 AGLVEQAMHLFEEMLQAGCEPNSQCCNILL 440 (750)
Q Consensus 411 ~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll 440 (750)
.|++++|...|++..+. .|+.......+
T Consensus 83 lg~~~eA~~~~~~al~l--~P~~~~~~~~l 110 (356)
T PLN03088 83 LEEYQTAKAALEKGASL--APGDSRFTKLI 110 (356)
T ss_pred hCCHHHHHHHHHHHHHh--CCCCHHHHHHH
Confidence 88888888888888765 44444333333
No 187
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=96.76 E-value=0.038 Score=49.87 Aligned_cols=64 Identities=16% Similarity=0.124 Sum_probs=51.1
Q ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 004480 222 ILFCNFVREFGKKRDLVSALRAYDASKKHLSSP--NMYICRTIIDVCGICGDYMKSRAIYEDLRSQ 285 (750)
Q Consensus 222 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 285 (750)
..+..++..+...|++++|+..|++.......+ ...+|..+...+...|++++|+..++.....
T Consensus 36 ~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~ 101 (168)
T CHL00033 36 FTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALER 101 (168)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 456777888888899999999999987653332 2357888888999999999999999887754
No 188
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=96.73 E-value=0.068 Score=48.39 Aligned_cols=86 Identities=15% Similarity=0.070 Sum_probs=65.3
Q ss_pred HhhHHHHHHHHHHcCChHHHHHHHHHHHHhhhcCCCcc-CHHHHHHHHHHHHhccCHHHHHHHHHHHHHCCCCCCHHHHH
Q 004480 324 MASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKL-DVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWS 402 (750)
Q Consensus 324 ~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~g~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~ 402 (750)
...+..+...+...|++++|...|++......+ .+ ....+..+...+.+.|++++|...+.+...... -+...+.
T Consensus 35 a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~---~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~ 110 (172)
T PRK02603 35 AFVYYRDGMSAQADGEYAEALENYEEALKLEED---PNDRSYILYNMGIIYASNGEHDKALEYYHQALELNP-KQPSALN 110 (172)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhc---cchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-ccHHHHH
Confidence 445777788888999999999999988763211 11 145788888999999999999999999987632 2566677
Q ss_pred HHHHHHHhcCC
Q 004480 403 SLINACANAGL 413 (750)
Q Consensus 403 ~li~~~~~~g~ 413 (750)
.+...+...|+
T Consensus 111 ~lg~~~~~~g~ 121 (172)
T PRK02603 111 NIAVIYHKRGE 121 (172)
T ss_pred HHHHHHHHcCC
Confidence 77777777766
No 189
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=96.71 E-value=0.16 Score=46.01 Aligned_cols=91 Identities=14% Similarity=0.100 Sum_probs=67.2
Q ss_pred HHHHHHHHHHHHhccCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 004480 363 VFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPN--TITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILL 440 (750)
Q Consensus 363 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~--~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll 440 (750)
...+..+...+...|++++|...|++.......+. ...+..+...+.+.|++++|...+.+..+.. +-+...+..+.
T Consensus 35 a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg 113 (172)
T PRK02603 35 AFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELN-PKQPSALNNIA 113 (172)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHH
Confidence 44577777788889999999999999886543322 4678888889999999999999999888753 23455666666
Q ss_pred HHHHHhCChHHHHH
Q 004480 441 QACVEACQFDRAFR 454 (750)
Q Consensus 441 ~~~~~~g~~~~A~~ 454 (750)
..+...|+...+..
T Consensus 114 ~~~~~~g~~~~a~~ 127 (172)
T PRK02603 114 VIYHKRGEKAEEAG 127 (172)
T ss_pred HHHHHcCChHhHhh
Confidence 67777776555443
No 190
>PRK15331 chaperone protein SicA; Provisional
Probab=96.67 E-value=0.022 Score=49.32 Aligned_cols=94 Identities=10% Similarity=0.042 Sum_probs=67.8
Q ss_pred hhhhhHHHHHHhhccCcHHHHHHHHHHHHhCCCCCcccccHHHHHHHHHcCCChHHHHHHhhhC----CCCcchHHHHHH
Q 004480 154 GFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIV----PRADILFCNFVR 229 (750)
Q Consensus 154 ~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~----~~~~~~~~~l~~ 229 (750)
.++.+-..+..+-..|++++|..+|.-+...+ +.+..++..|+.++-..+++++|+..|... +.++..+.....
T Consensus 36 ~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d--~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agq 113 (165)
T PRK15331 36 MMDGLYAHAYEFYNQGRLDEAETFFRFLCIYD--FYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQ 113 (165)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHH
Confidence 34444444445556899999999999888755 666777777888887788888888776552 455566677777
Q ss_pred HHHhcCCHHHHHHHHHHHHh
Q 004480 230 EFGKKRDLVSALRAYDASKK 249 (750)
Q Consensus 230 ~~~~~g~~~~A~~~~~~~~~ 249 (750)
.|...|+.+.|+..|+...+
T Consensus 114 C~l~l~~~~~A~~~f~~a~~ 133 (165)
T PRK15331 114 CQLLMRKAAKARQCFELVNE 133 (165)
T ss_pred HHHHhCCHHHHHHHHHHHHh
Confidence 77777888888877777765
No 191
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=96.64 E-value=0.056 Score=52.23 Aligned_cols=105 Identities=9% Similarity=-0.023 Sum_probs=75.7
Q ss_pred hhhHHHHHHHHhhcCChHHHHHHHHHHHHhcCChhhHHhhhhHHHHHHHHHhhhhcCchhHHHHHHHHHHhcCCCccccc
Q 004480 71 NDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLELF 150 (750)
Q Consensus 71 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~p~~~~ 150 (750)
...|......+.+.|++++|+..|+.++...+ +.. ....+.-.++..|...|++++|...|+.+.+. .|+...
T Consensus 143 ~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP--~s~---~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~--yP~s~~ 215 (263)
T PRK10803 143 NTDYNAAIALVQDKSRQDDAIVAFQNFVKKYP--DST---YQPNANYWLGQLNYNKGKKDDAAYYFASVVKN--YPKSPK 215 (263)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCc--CCc---chHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCCcc
Confidence 45566666666778999999999999999944 321 11233346677788999999999999999974 444332
Q ss_pred cchhhhhhHHHHHHhhccCcHHHHHHHHHHHHhCC
Q 004480 151 DGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFR 185 (750)
Q Consensus 151 ~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~ 185 (750)
....+.+....+...|+.++|...|+.++...
T Consensus 216 ---~~dAl~klg~~~~~~g~~~~A~~~~~~vi~~y 247 (263)
T PRK10803 216 ---AADAMFKVGVIMQDKGDTAKAKAVYQQVIKKY 247 (263)
T ss_pred ---hhHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 33444444445556899999999999988755
No 192
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=96.63 E-value=0.81 Score=45.11 Aligned_cols=60 Identities=8% Similarity=-0.058 Sum_probs=42.6
Q ss_pred HhhcCChHHHHHHHHHHHHhc--CChhhHHhhhhHHHHHHHHHhhhhcC-chhHHHHHHHHHHhc
Q 004480 81 LAKDGRLEEFAMIVESVVVSE--GNVSKFASMLSLEMVASGIVKSIREG-RIDCVVGVLKKLNEL 142 (750)
Q Consensus 81 ~~~~g~~~~A~~~~~~~~~~~--~~p~~~~~~~~~~~~~~~~~~~~~~g-~~~~A~~~l~~~~~~ 142 (750)
..++|+++-|..++.++...- .+|+... . ...++-+.+......+ ++++|..+++++.+.
T Consensus 3 A~~~~~~~~A~~~~~K~~~~~~~~~~~~~~-~-La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~ 65 (278)
T PF08631_consen 3 AWKQGDLDLAEHMYSKAKDLLNSLDPDMAE-E-LARVCYNIGKSLLSKKDKYEEAVKWLQRAYDI 65 (278)
T ss_pred chhhCCHHHHHHHHHHhhhHHhcCCcHHHH-H-HHHHHHHHHHHHHHcCCChHHHHHHHHHHHHH
Confidence 356899999999999987653 3444332 2 2344445666666777 999999999998764
No 193
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=96.60 E-value=0.05 Score=45.15 Aligned_cols=105 Identities=9% Similarity=-0.041 Sum_probs=56.8
Q ss_pred hhccCcHHHHHHHHHHHHhCCCCCcccccHHHHHHHHHcCCChHHHHHHhhhCCCCcchHHHHHHHHHhcCCHHHHHHHH
Q 004480 165 LLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRADILFCNFVREFGKKRDLVSALRAY 244 (750)
Q Consensus 165 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 244 (750)
+-..|+.++|+.+|++.+..|...... ...+..+...|...|++++|+.+|
T Consensus 11 ~d~~G~~~~Ai~~Y~~Al~~gL~~~~~-----------------------------~~a~i~lastlr~LG~~deA~~~L 61 (120)
T PF12688_consen 11 HDSLGREEEAIPLYRRALAAGLSGADR-----------------------------RRALIQLASTLRNLGRYDEALALL 61 (120)
T ss_pred HHhcCCHHHHHHHHHHHHHcCCCchHH-----------------------------HHHHHHHHHHHHHcCCHHHHHHHH
Confidence 334799999999999988877443210 123444556666666666666666
Q ss_pred HHHHhCCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCccHHHHHHHHHhhc
Q 004480 245 DASKKHLSSP--NMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNA 302 (750)
Q Consensus 245 ~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~ 302 (750)
++.....+.+ +......+..++...|+.++|++.+-.... ++...|.--|..|+
T Consensus 62 ~~~~~~~p~~~~~~~l~~f~Al~L~~~gr~~eAl~~~l~~la----~~~~~y~ra~~~ya 117 (120)
T PF12688_consen 62 EEALEEFPDDELNAALRVFLALALYNLGRPKEALEWLLEALA----ETLPRYRRAIRFYA 117 (120)
T ss_pred HHHHHHCCCccccHHHHHHHHHHHHHCCCHHHHHHHHHHHHH----HHHHHHHHHHHHHH
Confidence 6665532210 111111222345566666666666655443 23334554444443
No 194
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=96.57 E-value=0.26 Score=48.93 Aligned_cols=250 Identities=12% Similarity=0.005 Sum_probs=155.8
Q ss_pred cCcHHHHHHHHHHHHhCCCCCcccccHHHHHHHHHcCCChHHHHHHhhhC----CCCcchHHHHHHHHHhcCCHHHHHHH
Q 004480 168 SGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIV----PRADILFCNFVREFGKKRDLVSALRA 243 (750)
Q Consensus 168 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~----~~~~~~~~~l~~~~~~~g~~~~A~~~ 243 (750)
...+..|+..+...++.. |++..+|..-+..+...+++++|+--.+.- +............+...++..+|...
T Consensus 62 ~k~Y~nal~~yt~Ai~~~--pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd~~~k~~~r~~~c~~a~~~~i~A~~~ 139 (486)
T KOG0550|consen 62 QKTYGNALKNYTFAIDMC--PDNASYYSNRAATLMMLGRFEEALGDARQSVRLKDGFSKGQLREGQCHLALSDLIEAEEK 139 (486)
T ss_pred HhhHHHHHHHHHHHHHhC--ccchhhhchhHHHHHHHHhHhhcccchhhheecCCCccccccchhhhhhhhHHHHHHHHH
Confidence 577888899898888855 888888888888888888888877655332 22222222233333333333333333
Q ss_pred HH---------------HHHhCCC-CCCHHHHHHHHH-HHHhcCCHHHHHHHHHHHHhCCCCccHHHHHHHHHh----hc
Q 004480 244 YD---------------ASKKHLS-SPNMYICRTIID-VCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNV----NA 302 (750)
Q Consensus 244 ~~---------------~~~~~~~-~~~~~~~~~li~-~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~----~~ 302 (750)
++ ....... +|....|..+-. ++.-.|++++|.++--..++.. ....+...+++ +.
T Consensus 140 ~~~~~~~~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld---~~n~~al~vrg~~~yy~ 216 (486)
T KOG0550|consen 140 LKSKQAYKAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAIDILKLD---ATNAEALYVRGLCLYYN 216 (486)
T ss_pred hhhhhhhHHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHHHHhcc---cchhHHHHhcccccccc
Confidence 22 2221111 133344444432 4566688888888776665442 12233444443 44
Q ss_pred CChHHHHHHHHHHHHcCCCCCHhhHHH-------------HHHHHHHcCChHHHHHHHHHHHHhhhcCCCccCHHHHHHH
Q 004480 303 HDLKFTLEVYKNMQKLGVMADMASYNI-------------LLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTI 369 (750)
Q Consensus 303 ~~~~~a~~~~~~m~~~g~~~~~~~~~~-------------ll~~~~~~g~~~~A~~~~~~~~~~~~~g~~~~~~~~~~~l 369 (750)
.+.+.+..-|.+-+..+ |+...-.. =.+-..+.|.+..|.+.|.+...+.... ..++...|...
T Consensus 217 ~~~~ka~~hf~qal~ld--pdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n-~~~naklY~nr 293 (486)
T KOG0550|consen 217 DNADKAINHFQQALRLD--PDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSN-KKTNAKLYGNR 293 (486)
T ss_pred cchHHHHHHHhhhhccC--hhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccc-cchhHHHHHHh
Confidence 67788888888777654 44322211 1234457899999999999988765443 67777888888
Q ss_pred HHHHHhccCHHHHHHHHHHHHHCCCCCCHHH--HHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 004480 370 VKVFADAKWWQMALKVKEDMLSAGVTPNTIT--WSSLINACANAGLVEQAMHLFEEMLQAG 428 (750)
Q Consensus 370 i~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~--~~~li~~~~~~g~~~~a~~~~~~m~~~~ 428 (750)
.....+.|+.++|+.--+...+.+ +... |..-..++...+++++|++-|+...+..
T Consensus 294 a~v~~rLgrl~eaisdc~~Al~iD---~syikall~ra~c~l~le~~e~AV~d~~~a~q~~ 351 (486)
T KOG0550|consen 294 ALVNIRLGRLREAISDCNEALKID---SSYIKALLRRANCHLALEKWEEAVEDYEKAMQLE 351 (486)
T ss_pred HhhhcccCCchhhhhhhhhhhhcC---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 888999999999999888887642 2222 2233344555788999999998887753
No 195
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=96.55 E-value=0.16 Score=54.64 Aligned_cols=67 Identities=16% Similarity=0.118 Sum_probs=51.9
Q ss_pred CCCHhhHHHHHHHHHHcCChHHHHHHHHHHHHhhhcCCCccCHHHHHHHHHHHHhccCHHHHHHHHHHHHHCC
Q 004480 321 MADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAG 393 (750)
Q Consensus 321 ~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~g~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g 393 (750)
+.++..|..+.-.....|++++|...+++... +.|+...|..+...+...|+.++|.+.+++.....
T Consensus 417 ~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~------L~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~ 483 (517)
T PRK10153 417 NVLPRIYEILAVQALVKGKTDEAYQAINKAID------LEMSWLNYVLLGKVYELKGDNRLAADAYSTAFNLR 483 (517)
T ss_pred cCChHHHHHHHHHHHhcCCHHHHHHHHHHHHH------cCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 34556676666666667888888888888887 55777888888888888888888888888888764
No 196
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=96.51 E-value=0.078 Score=47.77 Aligned_cols=98 Identities=16% Similarity=0.056 Sum_probs=69.4
Q ss_pred HhhHHHHHHHHHHcCChHHHHHHHHHHHHhhhcCCCccCHHHHHHHHHHHHhccCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 004480 324 MASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSS 403 (750)
Q Consensus 324 ~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~g~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ 403 (750)
...+..+...+...|++++|...|+....+..+ ......+|..+...+...|++++|+..++...... +....++..
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~--~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~-~~~~~~~~~ 111 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEID--PYDRSYILYNIGLIHTSNGEHTKALEYYFQALERN-PFLPQALNN 111 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcccc--chhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCcHHHHHH
Confidence 455677777888889999999999988763211 01123478888888999999999999999988753 223455666
Q ss_pred HHHHHH-------hcCCHHHHHHHHHHH
Q 004480 404 LINACA-------NAGLVEQAMHLFEEM 424 (750)
Q Consensus 404 li~~~~-------~~g~~~~a~~~~~~m 424 (750)
+...+. +.|+++.|...+++.
T Consensus 112 la~i~~~~~~~~~~~g~~~~A~~~~~~a 139 (168)
T CHL00033 112 MAVICHYRGEQAIEQGDSEIAEAWFDQA 139 (168)
T ss_pred HHHHHHHhhHHHHHcccHHHHHHHHHHH
Confidence 666666 777877666666544
No 197
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=96.47 E-value=0.1 Score=53.13 Aligned_cols=72 Identities=10% Similarity=0.021 Sum_probs=58.7
Q ss_pred cCCcchhhhHHHHHHHHhhcCChHHHHHHHHHHHHhcCChhhHHhhhhHHHHHHHHHhhhhcCchhHHHHHHHHHHhc
Q 004480 65 RDLSSRNDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNEL 142 (750)
Q Consensus 65 ~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~ 142 (750)
.+|+. ...+..++.+|.+.|++++|+..|+++++. +|+.... ...+.++...|.+.|++++|++.|+++++.
T Consensus 70 ~dP~~-a~a~~NLG~AL~~lGryeEAIa~f~rALeL--~Pd~aeA---~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 70 ADVKT-AEDAVNLGLSLFSKGRVKDALAQFETALEL--NPNPDEA---QAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCchHH---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 45666 889999999999999999999999999999 5553321 122356666799999999999999999984
No 198
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=96.47 E-value=0.25 Score=53.12 Aligned_cols=72 Identities=15% Similarity=0.049 Sum_probs=59.5
Q ss_pred CCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHH
Q 004480 546 PNHISWTILIDACGGSGNVEGALQILKIMREDGMSPDVVAYTTAIKVCVRSKRLKQAFSLFEEMKHYQIQPNLVTY 621 (750)
Q Consensus 546 p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~ 621 (750)
.+...|.++.-.+...|++++|...++++.+. .|+...|..+...+...|+.++|.+.+++... +.|...||
T Consensus 418 ~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L--~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~--L~P~~pt~ 489 (517)
T PRK10153 418 VLPRIYEILAVQALVKGKTDEAYQAINKAIDL--EMSWLNYVLLGKVYELKGDNRLAADAYSTAFN--LRPGENTL 489 (517)
T ss_pred CChHHHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCCCchH
Confidence 35567777766667789999999999999985 57888999999999999999999999999876 46766664
No 199
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=96.42 E-value=0.013 Score=43.29 Aligned_cols=51 Identities=20% Similarity=0.229 Sum_probs=22.5
Q ss_pred ccCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 004480 376 AKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQA 427 (750)
Q Consensus 376 ~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 427 (750)
.|++++|+++|+++...... +...+..+..+|.+.|++++|..+++++...
T Consensus 4 ~~~~~~A~~~~~~~l~~~p~-~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~ 54 (68)
T PF14559_consen 4 QGDYDEAIELLEKALQRNPD-NPEARLLLAQCYLKQGQYDEAEELLERLLKQ 54 (68)
T ss_dssp TTHHHHHHHHHHHHHHHTTT-SHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG
T ss_pred ccCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 34444444444444443211 3444444444444444455544444444443
No 200
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=96.38 E-value=0.014 Score=43.07 Aligned_cols=63 Identities=16% Similarity=0.104 Sum_probs=43.6
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCccHHHHHHH
Q 004480 232 GKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSL 297 (750)
Q Consensus 232 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l 297 (750)
...|++++|++.|+.+.+..+ -+..++..+..+|.+.|++++|..+++.+... .|+...|..+
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p-~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~--~~~~~~~~~l 64 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNP-DNPEARLLLAQCYLKQGQYDEAEELLERLLKQ--DPDNPEYQQL 64 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTT-TSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG--GTTHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CcCHHHHHHH
Confidence 356788888888888876533 26667777888888888888888888887766 3443444333
No 201
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=96.38 E-value=0.084 Score=50.45 Aligned_cols=113 Identities=9% Similarity=-0.047 Sum_probs=82.4
Q ss_pred HHHHHHHHHHHHhCCCCCcccccHHHHHHHHHcCCChHHHHHHhhh----CCCCcchHHHHHHHHHhc---CCHHHHHHH
Q 004480 171 VEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACI----VPRADILFCNFVREFGKK---RDLVSALRA 243 (750)
Q Consensus 171 ~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~----~~~~~~~~~~l~~~~~~~---g~~~~A~~~ 243 (750)
.+....-++.-+..+ |.+...|..|+.+|...|+.+.|...|.. .|++...+..+..++... ..-.++..+
T Consensus 138 ~~~l~a~Le~~L~~n--P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~l 215 (287)
T COG4235 138 MEALIARLETHLQQN--PGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARAL 215 (287)
T ss_pred HHHHHHHHHHHHHhC--CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHH
Confidence 344444445444444 88888999999999999999999887765 377777777766655443 245678888
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 004480 244 YDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQN 286 (750)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 286 (750)
|+++..... -|+.+...+...+...|++.+|...|+.|.+..
T Consensus 216 l~~al~~D~-~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~l 257 (287)
T COG4235 216 LRQALALDP-ANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLL 257 (287)
T ss_pred HHHHHhcCC-ccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcC
Confidence 998887432 356677777778888999999999999888764
No 202
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=96.37 E-value=1.2 Score=44.11 Aligned_cols=80 Identities=16% Similarity=0.007 Sum_probs=40.9
Q ss_pred cCcHHHHHHHHHHHHhCCCCCcccccHHHHHHHHHcCCChHHHHHHhhh----CCCCcchHHHHHHHHHhcCCHHHHHHH
Q 004480 168 SGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACI----VPRADILFCNFVREFGKKRDLVSALRA 243 (750)
Q Consensus 168 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~----~~~~~~~~~~l~~~~~~~g~~~~A~~~ 243 (750)
.|++++|.+-|+.|.+.. .....-...|.-.--+.|..+.|.++.+. .|.-...+..++...+..|+|+.|+++
T Consensus 133 eG~~~~Ar~kfeAMl~dP--EtRllGLRgLyleAqr~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~AlkL 210 (531)
T COG3898 133 EGDYEDARKKFEAMLDDP--ETRLLGLRGLYLEAQRLGAREAARHYAERAAEKAPQLPWAARATLEARCAAGDWDGALKL 210 (531)
T ss_pred cCchHHHHHHHHHHhcCh--HHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhccCCchHHHHHHHHHHhcCChHHHHHH
Confidence 567777777777666421 11111111122222245555555555333 355555666666666666666666666
Q ss_pred HHHHHh
Q 004480 244 YDASKK 249 (750)
Q Consensus 244 ~~~~~~ 249 (750)
.+.-.+
T Consensus 211 vd~~~~ 216 (531)
T COG3898 211 VDAQRA 216 (531)
T ss_pred HHHHHH
Confidence 665443
No 203
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=96.35 E-value=0.071 Score=46.73 Aligned_cols=123 Identities=14% Similarity=0.058 Sum_probs=73.1
Q ss_pred hhhhHHHHHHhhccCcHHHHHHHHHHHHhCC---CCCccc-ccHHHHHHHHHcCCChHHHHHHhhhCCCCcchHHHHHHH
Q 004480 155 FKLLKNECQRLLDSGEVEMFVGLMEVLEEFR---LPVKEL-DEEFRIVQLCVNKPDVNLAIRYACIVPRADILFCNFVRE 230 (750)
Q Consensus 155 ~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~l~~~ 230 (750)
|..++.........|+.+.+...+++++..- +.++.. ..|..-.+... ... -..+...++..
T Consensus 6 F~~~~~~a~~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~~l------------~~~--~~~~~~~l~~~ 71 (146)
T PF03704_consen 6 FEALVREARAAARAGDPEEAIELLEEALALYRGDFLPDLDDEEWVEPERERL------------REL--YLDALERLAEA 71 (146)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHHH------------HHH--HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHH------------HHH--HHHHHHHHHHH
Confidence 3444443433444788888888888877532 112111 12221111111 000 01345567778
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-----CCCCccHH
Q 004480 231 FGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRS-----QNVTLNIY 292 (750)
Q Consensus 231 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~g~~~~~~ 292 (750)
+...|++++|..+.+.+....+ -+...|..+|.+|...|+..+|.+.|+.+.. .|+.|+..
T Consensus 72 ~~~~~~~~~a~~~~~~~l~~dP-~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~ 137 (146)
T PF03704_consen 72 LLEAGDYEEALRLLQRALALDP-YDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPE 137 (146)
T ss_dssp HHHTT-HHHHHHHHHHHHHHST-T-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HH
T ss_pred HHhccCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHH
Confidence 8889999999999999988543 4788999999999999999999999998753 35555443
No 204
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=96.31 E-value=0.022 Score=41.58 Aligned_cols=58 Identities=19% Similarity=0.156 Sum_probs=45.6
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 004480 227 FVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQ 285 (750)
Q Consensus 227 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 285 (750)
+...+.+.|++++|+..|+++.+..+ -+...+..+..++...|++++|...|+++.+.
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P-~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~ 60 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDP-DNPEAWYLLGRILYQQGRYDEALAYYERALEL 60 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCST-THHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 45667788899999999998887542 35678888888888899999999988888765
No 205
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.30 E-value=0.96 Score=42.22 Aligned_cols=98 Identities=11% Similarity=0.122 Sum_probs=73.1
Q ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH--
Q 004480 364 FTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQ-- 441 (750)
Q Consensus 364 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~-- 441 (750)
...+.++..+.-.|.+.-...++.+.++...+-+......|++.-.+.|+.+.|...|++..+..-+.|..+++.++.
T Consensus 178 ~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n 257 (366)
T KOG2796|consen 178 RVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMN 257 (366)
T ss_pred HHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhh
Confidence 345667777778888888889999998877677788888888888899999999999998887654555555555543
Q ss_pred ---HHHHhCChHHHHHHHHHHhh
Q 004480 442 ---ACVEACQFDRAFRLFRSWTL 461 (750)
Q Consensus 442 ---~~~~~g~~~~A~~~~~~~~~ 461 (750)
.|.-.+++..|.+.+.++..
T Consensus 258 ~a~i~lg~nn~a~a~r~~~~i~~ 280 (366)
T KOG2796|consen 258 SAFLHLGQNNFAEAHRFFTEILR 280 (366)
T ss_pred hhhheecccchHHHHHHHhhccc
Confidence 34445677777777766543
No 206
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=96.22 E-value=0.12 Score=45.16 Aligned_cols=71 Identities=18% Similarity=0.310 Sum_probs=49.2
Q ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----cCCCCCHHHH
Q 004480 365 TYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQ-----AGCEPNSQCC 436 (750)
Q Consensus 365 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~-----~~~~p~~~~~ 436 (750)
....++..+...|++++|..+.+.+.... +-+...|..+|.+|...|+...|.+.|+++.. .|+.|+..+-
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~ 139 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETR 139 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHH
Confidence 34555666778888999999998888764 34778888899999999999999988887753 3788877654
No 207
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=96.22 E-value=0.4 Score=47.54 Aligned_cols=306 Identities=14% Similarity=-0.004 Sum_probs=157.7
Q ss_pred HHHHHHhhcCChHHHHHHHHHHHHhcCChhhHHhhhhHHHHHHHHHhhhhcCchhHHHHHHHHHH--hcCCCccccccch
Q 004480 76 DMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLN--ELGVAPLELFDGS 153 (750)
Q Consensus 76 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~--~~~~~p~~~~~~~ 153 (750)
.-..-+++.|+...-...|+.+++.|.+ +......+++.+..+|.-.++|++|+++...=+ .+-+. |..--..
T Consensus 22 lEGERLck~gdcraGv~ff~aA~qvGTe----Dl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lg-dklGEAK 96 (639)
T KOG1130|consen 22 LEGERLCKMGDCRAGVDFFKAALQVGTE----DLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLG-DKLGEAK 96 (639)
T ss_pred HHHHHHHhccchhhhHHHHHHHHHhcch----HHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhc-chhcccc
Confidence 3357889999999999999999999754 222345566788888888999999988754321 11000 0000000
Q ss_pred hhhhhHHHHHHhhccCcHHHHHHHHHHHH----hCCCCCcccccHHHHHHHHHcCCChHHHHHHhhhCCCCcchHHHHHH
Q 004480 154 GFKLLKNECQRLLDSGEVEMFVGLMEVLE----EFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRADILFCNFVR 229 (750)
Q Consensus 154 ~~~~l~~~~~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~l~~ 229 (750)
.-..+.+.+.. .|.+++|+-...+=+ +.|-.......+..++.+|...|+--. ...|.+...++.=+
T Consensus 97 ssgNLGNtlKv---~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g-----~~~pee~g~f~~ev- 167 (639)
T KOG1130|consen 97 SSGNLGNTLKV---KGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTG-----LEAPEEKGAFNAEV- 167 (639)
T ss_pred ccccccchhhh---hcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccC-----CCChhhcccccHHH-
Confidence 00111111111 567777765533211 222112222223333333333222100 00010000111000
Q ss_pred HHHhcCCHHHHHHHHHHHH----hCCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCccHHHHHHHHHhhcCC
Q 004480 230 EFGKKRDLVSALRAYDASK----KHLSS-PNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHD 304 (750)
Q Consensus 230 ~~~~~g~~~~A~~~~~~~~----~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~ 304 (750)
...++.|.+.|.+=. +.|-. .-...|..|...|--.|+++.|+...+.-...
T Consensus 168 ----~~al~~Av~fy~eNL~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~i------------------- 224 (639)
T KOG1130|consen 168 ----TSALENAVKFYMENLELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEI------------------- 224 (639)
T ss_pred ----HHHHHHHHHHHHHHHHHHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHH-------------------
Confidence 011223333333211 11100 11234444555555556666666554432210
Q ss_pred hHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHHcCChHHHHHHHHHHHHhhh-cCCCccCHHHHHHHHHHHHhccCHHHHH
Q 004480 305 LKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEA-KGVLKLDVFTYSTIVKVFADAKWWQMAL 383 (750)
Q Consensus 305 ~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~-~g~~~~~~~~~~~li~~~~~~g~~~~a~ 383 (750)
|.+.=++. .....+..+.+++.-.|+++.|.+.|+....+.. -|.-.......-.|.+.|.-..+++.|+
T Consensus 225 ---a~efGDrA------aeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI 295 (639)
T KOG1130|consen 225 ---AQEFGDRA------AERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAI 295 (639)
T ss_pred ---HHHhhhHH------HHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHH
Confidence 11111111 1223566677888888999999888877554321 1212234455667888888888899998
Q ss_pred HHHHHHHHC-----CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 004480 384 KVKEDMLSA-----GVTPNTITWSSLINACANAGLVEQAMHLFEEMLQA 427 (750)
Q Consensus 384 ~~~~~m~~~-----g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 427 (750)
.++..-+.. +..-....+-+|..+|...|..++|+.+...-++.
T Consensus 296 ~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~~ 344 (639)
T KOG1130|consen 296 TYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLRS 344 (639)
T ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 888765431 11224567788999999999999999887766553
No 208
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=96.16 E-value=0.84 Score=40.22 Aligned_cols=134 Identities=13% Similarity=0.079 Sum_probs=101.4
Q ss_pred CCCCHhhHHHHHHHHHHcCChHHHHHHHHHHHHhhhcCCCccCHHHHHHHHHHHHhccCHHHHHHHHHHHHHCCCC-CCH
Q 004480 320 VMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVT-PNT 398 (750)
Q Consensus 320 ~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~g~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~-p~~ 398 (750)
+.|+...--.|..++...|+..+|...|++.. .|.+..|......+.++....++..+|...++.+.+.... -+.
T Consensus 85 ~ApTvqnr~rLa~al~elGr~~EA~~hy~qal----sG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~p 160 (251)
T COG4700 85 IAPTVQNRYRLANALAELGRYHEAVPHYQQAL----SGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSP 160 (251)
T ss_pred hchhHHHHHHHHHHHHHhhhhhhhHHHHHHHh----ccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCC
Confidence 35777777788899999999999999999887 5777888888999999999999999999999998876411 123
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCChHHHHHHHHHH
Q 004480 399 ITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSW 459 (750)
Q Consensus 399 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~ 459 (750)
.+.-.+.+.+...|.+.+|...|+..... -|+...-...-..+.+.|+.+++..-+..+
T Consensus 161 d~~Ll~aR~laa~g~~a~Aesafe~a~~~--ypg~~ar~~Y~e~La~qgr~~ea~aq~~~v 219 (251)
T COG4700 161 DGHLLFARTLAAQGKYADAESAFEVAISY--YPGPQARIYYAEMLAKQGRLREANAQYVAV 219 (251)
T ss_pred CchHHHHHHHHhcCCchhHHHHHHHHHHh--CCCHHHHHHHHHHHHHhcchhHHHHHHHHH
Confidence 34556778899999999999999999876 454443333334456777777765544443
No 209
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.14 E-value=1.2 Score=41.69 Aligned_cols=74 Identities=11% Similarity=0.107 Sum_probs=54.6
Q ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCccHHHHH
Q 004480 222 ILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFN 295 (750)
Q Consensus 222 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~ 295 (750)
.+.+.++..+.-.|++.-....+++.++...+.++.....+++.-.+.||.+.|...|++..+..-+.|..+++
T Consensus 178 ~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~ 251 (366)
T KOG2796|consen 178 RVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGK 251 (366)
T ss_pred HHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchh
Confidence 45666777777778888888888888887666677888888888888899988888888776543333333333
No 210
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=95.98 E-value=0.037 Score=40.92 Aligned_cols=59 Identities=17% Similarity=0.210 Sum_probs=24.2
Q ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHH
Q 004480 365 TYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAG-LVEQAMHLFEEM 424 (750)
Q Consensus 365 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g-~~~~a~~~~~~m 424 (750)
.|..+...+...|++++|+..|.+.++.. +-+...|..+..++.+.| ++++|++.+++.
T Consensus 5 ~~~~~g~~~~~~~~~~~A~~~~~~ai~~~-p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~a 64 (69)
T PF13414_consen 5 AWYNLGQIYFQQGDYEEAIEYFEKAIELD-PNNAEAYYNLGLAYMKLGKDYEEAIEDFEKA 64 (69)
T ss_dssp HHHHHHHHHHHTTHHHHHHHHHHHHHHHS-TTHHHHHHHHHHHHHHTTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhCccHHHHHHHHHHH
Confidence 33344444444444444444444444332 113334444444444444 344444444443
No 211
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.87 E-value=3.4 Score=44.78 Aligned_cols=127 Identities=17% Similarity=0.185 Sum_probs=97.1
Q ss_pred HHHHHHHHH-cCCCCCHhhHHHHHHHHHHcCChHHHHHHHHHHHHhhhcCCCccCHHHHHHHHHHHHhccCHHHHHHHHH
Q 004480 309 LEVYKNMQK-LGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKE 387 (750)
Q Consensus 309 ~~~~~~m~~-~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~g~~~~~~~~~~~li~~~~~~g~~~~a~~~~~ 387 (750)
+.+.+.+.. .|..-...+.+--+.-+...|+..+|.++-.+.+ -||...|-.-+.+++..++|++-+++-+
T Consensus 668 l~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fk--------ipdKr~~wLk~~aLa~~~kweeLekfAk 739 (829)
T KOG2280|consen 668 LKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFK--------IPDKRLWWLKLTALADIKKWEELEKFAK 739 (829)
T ss_pred HHHHHHHHHHhccccccCcHHHHHHHHHHccchHHHHHHHHhcC--------CcchhhHHHHHHHHHhhhhHHHHHHHHh
Confidence 444445533 2445566677777888888999999999988775 3899999999999999999998877665
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCChHHHHHHHHH
Q 004480 388 DMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRS 458 (750)
Q Consensus 388 ~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~ 458 (750)
.+. ...-|.-.+.+|.+.|+.++|.+++.+.. +.. -.+.+|.+.|++.+|.++--+
T Consensus 740 skk------sPIGy~PFVe~c~~~~n~~EA~KYiprv~-----~l~----ekv~ay~~~~~~~eAad~A~~ 795 (829)
T KOG2280|consen 740 SKK------SPIGYLPFVEACLKQGNKDEAKKYIPRVG-----GLQ----EKVKAYLRVGDVKEAADLAAE 795 (829)
T ss_pred ccC------CCCCchhHHHHHHhcccHHHHhhhhhccC-----ChH----HHHHHHHHhccHHHHHHHHHH
Confidence 543 24567888999999999999999988763 211 567889999999988776543
No 212
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=95.87 E-value=0.026 Score=42.34 Aligned_cols=58 Identities=16% Similarity=0.107 Sum_probs=47.6
Q ss_pred HHHHhhcCChHHHHHHHHHHHHhcCChhhHHhhhhHHHHHHHHHhhhhcCchhHHHHHHHHHHhcC
Q 004480 78 ASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELG 143 (750)
Q Consensus 78 ~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~ 143 (750)
...+.+.+++++|+..++.++.. +|+....+...+.+ +.+.|++++|.+.|++.++.+
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~~~a~~------~~~~g~~~~A~~~l~~~l~~~ 59 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALEL--DPDDPELWLQRARC------LFQLGRYEEALEDLERALELS 59 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHh--CcccchhhHHHHHH------HHHhccHHHHHHHHHHHHHHC
Confidence 45788899999999999999999 66655554444444 889999999999999999843
No 213
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=95.86 E-value=0.15 Score=42.86 Aligned_cols=87 Identities=16% Similarity=0.132 Sum_probs=57.3
Q ss_pred CHHHHHHHHHHHHcCCCHHHHHHHHHHHH---------------HCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-
Q 004480 547 NHISWTILIDACGGSGNVEGALQILKIMR---------------EDGMSPDVVAYTTAIKVCVRSKRLKQAFSLFEEMK- 610 (750)
Q Consensus 547 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~---------------~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~- 610 (750)
|..++..+|.++++.|+++....+++..= ...+.|+..+..+++.+|+..|++..|.++++...
T Consensus 1 de~~~~~ii~al~r~g~~~~i~~~i~~~WgI~~~~~~~~~~~~~~spl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~ 80 (126)
T PF12921_consen 1 DEELLCNIIYALGRSGQLDSIKSYIKSVWGIDVNGKKKEGDYPPSSPLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSR 80 (126)
T ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHHhcCCCCCCccccCccCCCCCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 45567777788888888877777775441 11245677777777777777777777777777655
Q ss_pred HCCCCCCHHHHHHHHHHHHhcCC
Q 004480 611 HYQIQPNLVTYITLLRARSRYGS 633 (750)
Q Consensus 611 ~~g~~p~~~t~~~li~~~~~~g~ 633 (750)
..++.-+..+|..|+.-+...-+
T Consensus 81 ~Y~I~i~~~~W~~Ll~W~~v~s~ 103 (126)
T PF12921_consen 81 KYPIPIPKEFWRRLLEWAYVLSS 103 (126)
T ss_pred HcCCCCCHHHHHHHHHHHHHhcC
Confidence 34566667777777766554433
No 214
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=95.75 E-value=2.5 Score=42.36 Aligned_cols=247 Identities=11% Similarity=-0.038 Sum_probs=157.7
Q ss_pred hhhcCchhHHHHHHHHHHhcCCCccccccchhhhhhHHHHHHhhccCcHHHHHHHHHHHHhCCCCCcccccHHHHHHHHH
Q 004480 123 SIREGRIDCVVGVLKKLNELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCV 202 (750)
Q Consensus 123 ~~~~g~~~~A~~~l~~~~~~~~~p~~~~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 202 (750)
+.+..+|..|+..+..+++ .-|+...+ +.+-+..+..-|++++|.--.+.-+. +.+..........+.+.
T Consensus 59 ~yk~k~Y~nal~~yt~Ai~--~~pd~a~y------y~nRAa~~m~~~~~~~a~~dar~~~r--~kd~~~k~~~r~~~c~~ 128 (486)
T KOG0550|consen 59 FYKQKTYGNALKNYTFAID--MCPDNASY------YSNRAATLMMLGRFEEALGDARQSVR--LKDGFSKGQLREGQCHL 128 (486)
T ss_pred HHHHhhHHHHHHHHHHHHH--hCccchhh------hchhHHHHHHHHhHhhcccchhhhee--cCCCccccccchhhhhh
Confidence 4578999999999999998 45554322 12222233336788877765555444 33555556666777777
Q ss_pred cCCChHHHHHHhhhC----------------CCCc-----chHHHH-HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHH
Q 004480 203 NKPDVNLAIRYACIV----------------PRAD-----ILFCNF-VREFGKKRDLVSALRAYDASKKHLSSPNMYICR 260 (750)
Q Consensus 203 ~~~~~~~A~~~~~~~----------------~~~~-----~~~~~l-~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 260 (750)
..++..+|.+.++.- |.+. ..+-.+ ...+.-.|++++|.++-..+.+.. ....+.
T Consensus 129 a~~~~i~A~~~~~~~~~~~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld---~~n~~a 205 (486)
T KOG0550|consen 129 ALSDLIEAEEKLKSKQAYKAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAIDILKLD---ATNAEA 205 (486)
T ss_pred hhHHHHHHHHHhhhhhhhHHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHHHHhcc---cchhHH
Confidence 777777776554321 1111 112222 445667899999998887777632 122333
Q ss_pred HHHH--HHHhcCCHHHHHHHHHHHHhCCCCccHHHHHHHHH---------------hhcCChHHHHHHHHHHHHc---CC
Q 004480 261 TIID--VCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMN---------------VNAHDLKFTLEVYKNMQKL---GV 320 (750)
Q Consensus 261 ~li~--~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~---------------~~~~~~~~a~~~~~~m~~~---g~ 320 (750)
..++ ++--.++.+.|...|++.+..+ ||...-.+.-. ...|.+..|.+.|.+.+.. ++
T Consensus 206 l~vrg~~~yy~~~~~ka~~hf~qal~ld--pdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~ 283 (486)
T KOG0550|consen 206 LYVRGLCLYYNDNADKAINHFQQALRLD--PDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNK 283 (486)
T ss_pred HHhcccccccccchHHHHHHHhhhhccC--hhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCcccc
Confidence 3443 3445678899999999887653 44433222111 1236788999999988764 34
Q ss_pred CCCHhhHHHHHHHHHHcCChHHHHHHHHHHHHhhhcCCCccCHH---HHHHHHHHHHhccCHHHHHHHHHHHHHC
Q 004480 321 MADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVF---TYSTIVKVFADAKWWQMALKVKEDMLSA 392 (750)
Q Consensus 321 ~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~g~~~~~~~---~~~~li~~~~~~g~~~~a~~~~~~m~~~ 392 (750)
.++...|........+.|+.++|+.--+.... .|.. .|..-..++...++|++|.+-|++..+.
T Consensus 284 ~~naklY~nra~v~~rLgrl~eaisdc~~Al~--------iD~syikall~ra~c~l~le~~e~AV~d~~~a~q~ 350 (486)
T KOG0550|consen 284 KTNAKLYGNRALVNIRLGRLREAISDCNEALK--------IDSSYIKALLRRANCHLALEKWEEAVEDYEKAMQL 350 (486)
T ss_pred chhHHHHHHhHhhhcccCCchhhhhhhhhhhh--------cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 55666677777788899999999998887765 2332 3444445667789999999999988765
No 215
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=95.74 E-value=2.7 Score=42.71 Aligned_cols=123 Identities=11% Similarity=0.084 Sum_probs=68.1
Q ss_pred HHHHHHHHHHHHHcCCCC-CHHHHHHHH----HHHHc---CCCHHHHHHHHHHHHHCCCCCC----HHHHHHHHHH--HH
Q 004480 529 YYRVKALMNEMRTVGLSP-NHISWTILI----DACGG---SGNVEGALQILKIMREDGMSPD----VVAYTTAIKV--CV 594 (750)
Q Consensus 529 ~~~a~~l~~~m~~~~~~p-~~~~~~~li----~~~~~---~g~~~~A~~~~~~m~~~g~~p~----~~~~~~li~~--~~ 594 (750)
-++|.++++.+.+. .| |..+-|.+. ..|.. ...+..-..+-+-+.+.|+.|- ...-|.|-+| +.
T Consensus 396 dekalnLLk~il~f--t~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~LaDAEyLy 473 (549)
T PF07079_consen 396 DEKALNLLKLILQF--TNYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIANFLADAEYLY 473 (549)
T ss_pred cHHHHHHHHHHHHh--ccccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHHHHHH
Confidence 35666666666653 22 333333222 22221 2233444444444555677663 3345555554 45
Q ss_pred HcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 004480 595 RSKRLKQAFSLFEEMKHYQIQPNLVTYITLLRARSRYGSLHEVQQCLAVYQDMWKAGYKANDTYLKELI 663 (750)
Q Consensus 595 ~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li 663 (750)
.+|++.++.-.-....+ +.|++.+|.-+.-++....+.++ |++++.. ++|+..++++=+
T Consensus 474 sqgey~kc~~ys~WL~~--iaPS~~~~RLlGl~l~e~k~Y~e---A~~~l~~-----LP~n~~~~dskv 532 (549)
T PF07079_consen 474 SQGEYHKCYLYSSWLTK--IAPSPQAYRLLGLCLMENKRYQE---AWEYLQK-----LPPNERMRDSKV 532 (549)
T ss_pred hcccHHHHHHHHHHHHH--hCCcHHHHHHHHHHHHHHhhHHH---HHHHHHh-----CCCchhhHHHHH
Confidence 57888877766555554 67888888877766666665555 5666654 367776666543
No 216
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=95.71 E-value=0.11 Score=48.62 Aligned_cols=104 Identities=12% Similarity=0.117 Sum_probs=63.9
Q ss_pred CccHHHHHHHHHHHHh-------cHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHH
Q 004480 512 KPTTTTYNILMKACCT-------DYYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQILKIMREDGMSPDVV 584 (750)
Q Consensus 512 ~p~~~~~~~li~~~~~-------~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 584 (750)
+.|-.+|-..+..+.. +.+-....++.|.+-|+.-|..+|+.||..+-+-.- .|..
T Consensus 64 ~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkf----------------iP~n- 126 (406)
T KOG3941|consen 64 KRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKF----------------IPQN- 126 (406)
T ss_pred cccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCccccc----------------ccHH-
Confidence 4566666666666542 355666677777777888888888877776544221 1211
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 004480 585 AYTTAIKVCVRSKRLKQAFSLFEEMKHYQIQPNLVTYITLLRARSRYGSL 634 (750)
Q Consensus 585 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~ 634 (750)
.+-.....|= .+-+-+++++++|...|+-||..+-..|+.++.+.+..
T Consensus 127 vfQ~~F~HYP--~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~p 174 (406)
T KOG3941|consen 127 VFQKVFLHYP--QQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNFP 174 (406)
T ss_pred HHHHHHhhCc--hhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhcccccc
Confidence 1111111222 22345777888888888888888888888887777653
No 217
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=95.68 E-value=1.3 Score=43.72 Aligned_cols=147 Identities=12% Similarity=0.204 Sum_probs=101.3
Q ss_pred cHHHHHHHHHHHHh----cHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc--CC----CHHHHHHHHHHHHHCC---CC
Q 004480 514 TTTTYNILMKACCT----DYYRVKALMNEMRTVGLSPNHISWTILIDACGG--SG----NVEGALQILKIMREDG---MS 580 (750)
Q Consensus 514 ~~~~~~~li~~~~~----~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~--~g----~~~~A~~~~~~m~~~g---~~ 580 (750)
...++.+++..... ..++...+++.|.+.|++-+..+|-+..-.... .. ....|..+++.|++.. -.
T Consensus 59 ~~~~la~~l~~~~~~p~~~~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs 138 (297)
T PF13170_consen 59 HRFILAALLDISFEDPEEAFKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTS 138 (297)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccC
Confidence 34555555555444 356788899999999999888888664333332 22 3667999999999863 23
Q ss_pred CCHHHHHHHHHHHHHcCC----HHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHcCCCCC
Q 004480 581 PDVVAYTTAIKVCVRSKR----LKQAFSLFEEMKHYQIQPN-LVTYITLLRARSRYGSLHEVQQCLAVYQDMWKAGYKAN 655 (750)
Q Consensus 581 p~~~~~~~li~~~~~~g~----~~~A~~~~~~m~~~g~~p~-~~t~~~li~~~~~~g~~~~~~~a~~~~~~m~~~g~~p~ 655 (750)
++...+..++.. ..++ .+.+..+|+.+.+.|+..+ ..-+-+-+-+++.....+.+.++.++++.+.+.|+++.
T Consensus 139 ~~D~~~a~lLA~--~~~~~e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik 216 (297)
T PF13170_consen 139 PEDYPFAALLAM--TSEDVEELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIK 216 (297)
T ss_pred ccchhHHHHHhc--ccccHHHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccc
Confidence 466677777655 3333 4678888999999898874 33444444455444444457899999999999999988
Q ss_pred HHHHHHH
Q 004480 656 DTYLKEL 662 (750)
Q Consensus 656 ~~~~~~l 662 (750)
...|..+
T Consensus 217 ~~~yp~l 223 (297)
T PF13170_consen 217 YMHYPTL 223 (297)
T ss_pred cccccHH
Confidence 8776644
No 218
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=95.68 E-value=0.035 Score=42.29 Aligned_cols=68 Identities=12% Similarity=0.011 Sum_probs=47.2
Q ss_pred HHHHHHHHHhhhhcCchhHHHHHHHHHHhc--CCCccccccchhhhhhHHHHHHhhccCcHHHHHHHHHHHHh
Q 004480 113 LEMVASGIVKSIREGRIDCVVGVLKKLNEL--GVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEE 183 (750)
Q Consensus 113 ~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~--~~~p~~~~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~ 183 (750)
..++.++...+...|++++|++.|+++++. ...++. ..+..++.+....+...|++++|++.+++..+
T Consensus 5 a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~---~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 5 ANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDH---PDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHH---HHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCC---HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 455667778899999999999999999864 122221 12344555555556668999999999887654
No 219
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=95.63 E-value=2.8 Score=42.00 Aligned_cols=56 Identities=18% Similarity=0.231 Sum_probs=35.2
Q ss_pred cCcHHHHHHHHHHHHhCCCCCcccccHHHHHHHHHcCCChHHHHHHhhhCCCCcchHHHHHHHHHh
Q 004480 168 SGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRADILFCNFVREFGK 233 (750)
Q Consensus 168 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~l~~~~~~ 233 (750)
.|+.+-|..+++. .|. ...-+..+...|..+.|+.-.-.-.+.+.+|..|+..-.+
T Consensus 13 ~GR~~LA~~LL~~------Ep~----~~~qVplLL~m~e~e~AL~kAi~SgD~DLi~~vLl~L~~~ 68 (319)
T PF04840_consen 13 EGRPKLATKLLEL------EPR----ASKQVPLLLKMGEDELALNKAIESGDTDLIYLVLLHLKRK 68 (319)
T ss_pred cChHHHHHHHHHc------CCC----hHHHHHHHhcCCchHHHHHHHHHcCCccHHHHHHHHHHHh
Confidence 7999999887763 122 2234556777788888766554445555666666654443
No 220
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=95.62 E-value=0.22 Score=41.84 Aligned_cols=83 Identities=14% Similarity=0.116 Sum_probs=68.4
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHH---------------HCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004480 582 DVVAYTTAIKVCVRSKRLKQAFSLFEEMK---------------HYQIQPNLVTYITLLRARSRYGSLHEVQQCLAVYQD 646 (750)
Q Consensus 582 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~---------------~~g~~p~~~t~~~li~~~~~~g~~~~~~~a~~~~~~ 646 (750)
|..++.++|.++++.|+++....+++..= ...+.|+..+..+++.+|+..|++.. |+++.+.
T Consensus 1 de~~~~~ii~al~r~g~~~~i~~~i~~~WgI~~~~~~~~~~~~~~spl~Pt~~lL~AIv~sf~~n~~i~~---al~~vd~ 77 (126)
T PF12921_consen 1 DEELLCNIIYALGRSGQLDSIKSYIKSVWGIDVNGKKKEGDYPPSSPLYPTSRLLIAIVHSFGYNGDIFS---ALKLVDF 77 (126)
T ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHHhcCCCCCCccccCccCCCCCCCCCHHHHHHHHHHHHhcccHHH---HHHHHHH
Confidence 56789999999999999999999998652 22457999999999999999998776 5666666
Q ss_pred HHH-cCCCCCHHHHHHHHHHHH
Q 004480 647 MWK-AGYKANDTYLKELIEEWC 667 (750)
Q Consensus 647 m~~-~g~~p~~~~~~~li~~~~ 667 (750)
..+ .+++.+..+|..|++...
T Consensus 78 fs~~Y~I~i~~~~W~~Ll~W~~ 99 (126)
T PF12921_consen 78 FSRKYPIPIPKEFWRRLLEWAY 99 (126)
T ss_pred HHHHcCCCCCHHHHHHHHHHHH
Confidence 654 778888999999998654
No 221
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=95.60 E-value=0.49 Score=42.73 Aligned_cols=29 Identities=10% Similarity=-0.031 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 004480 257 YICRTIIDVCGICGDYMKSRAIYEDLRSQ 285 (750)
Q Consensus 257 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 285 (750)
.+|.-+...+...|+.++|..+|+-....
T Consensus 238 EtyFYL~K~~l~~G~~~~A~~LfKLaian 266 (297)
T COG4785 238 ETYFYLGKYYLSLGDLDEATALFKLAVAN 266 (297)
T ss_pred HHHHHHHHHHhccccHHHHHHHHHHHHHH
Confidence 34555555555556666666655555443
No 222
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=95.45 E-value=0.28 Score=47.47 Aligned_cols=100 Identities=6% Similarity=-0.075 Sum_probs=57.9
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHHhhhcCCCccCHHHHHHHHHHHHhccCHHHHHHHHHHHHHCCC--CCCHHHHHH
Q 004480 326 SYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGV--TPNTITWSS 403 (750)
Q Consensus 326 ~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~g~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~--~p~~~~~~~ 403 (750)
.|...+..+.+.|++++|...|+.+.+...++... ...+--+...|...|++++|...|+.+...-. ......+-.
T Consensus 145 ~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a--~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~k 222 (263)
T PRK10803 145 DYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQ--PNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFK 222 (263)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcch--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHH
Confidence 45555544455677777777777776631111111 13455566667777777777777777765411 112333444
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHc
Q 004480 404 LINACANAGLVEQAMHLFEEMLQA 427 (750)
Q Consensus 404 li~~~~~~g~~~~a~~~~~~m~~~ 427 (750)
+...+...|+.++|..+|+.+.+.
T Consensus 223 lg~~~~~~g~~~~A~~~~~~vi~~ 246 (263)
T PRK10803 223 VGVIMQDKGDTAKAKAVYQQVIKK 246 (263)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHH
Confidence 555666777777777777777664
No 223
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=95.30 E-value=2.3 Score=39.60 Aligned_cols=64 Identities=14% Similarity=0.081 Sum_probs=44.1
Q ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 004480 222 ILFCNFVREFGKKRDLVSALRAYDASKKHLSSP--NMYICRTIIDVCGICGDYMKSRAIYEDLRSQ 285 (750)
Q Consensus 222 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 285 (750)
..+...+..+...|++.+|.+.|+.+....+.. -..+.-.++.++-+.|+++.|...|++..+.
T Consensus 6 ~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~ 71 (203)
T PF13525_consen 6 EALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKL 71 (203)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 345556667778888999998888888754322 2345666777888888888888888887765
No 224
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=95.22 E-value=0.5 Score=49.55 Aligned_cols=162 Identities=9% Similarity=0.068 Sum_probs=103.0
Q ss_pred HHHHHHhhcCChHHHHHHHHHHH-HhcCChhhHHhhhhHHHHHHHHHhhhhcCchhHHHHHHHHHHhcCCCccccccchh
Q 004480 76 DMASKLAKDGRLEEFAMIVESVV-VSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLELFDGSG 154 (750)
Q Consensus 76 ~l~~~~~~~g~~~~A~~~~~~~~-~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~p~~~~~~~~ 154 (750)
.......-+|+++++.++.+.-. -..++++ .-..+++-+.+.|-++.|+++-..-.. -
T Consensus 266 ~~fk~av~~~d~~~v~~~i~~~~ll~~i~~~---------~~~~i~~fL~~~G~~e~AL~~~~D~~~------------r 324 (443)
T PF04053_consen 266 LEFKTAVLRGDFEEVLRMIAASNLLPNIPKD---------QGQSIARFLEKKGYPELALQFVTDPDH------------R 324 (443)
T ss_dssp HHHHHHHHTT-HHH-----HHHHTGGG--HH---------HHHHHHHHHHHTT-HHHHHHHSS-HHH------------H
T ss_pred HHHHHHHHcCChhhhhhhhhhhhhcccCChh---------HHHHHHHHHHHCCCHHHHHhhcCChHH------------H
Confidence 34556667899999877765221 1111211 224555667789999999888543321 4
Q ss_pred hhhhHHHHHHhhccCcHHHHHHHHHHHHhCCCCCcccccHHHHHHHHHcCCChHHHHHHhhhCCCCcchHHHHHHHHHhc
Q 004480 155 FKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRADILFCNFVREFGKK 234 (750)
Q Consensus 155 ~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~l~~~~~~~ 234 (750)
|+.-++ .|+.+.|.++.++ .++...|..|+.....+|+++.|++.|.+..+ +..|+-.|.-.
T Consensus 325 FeLAl~-------lg~L~~A~~~a~~-------~~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d----~~~L~lLy~~~ 386 (443)
T PF04053_consen 325 FELALQ-------LGNLDIALEIAKE-------LDDPEKWKQLGDEALRQGNIELAEECYQKAKD----FSGLLLLYSST 386 (443)
T ss_dssp HHHHHH-------CT-HHHHHHHCCC-------CSTHHHHHHHHHHHHHTTBHHHHHHHHHHCT-----HHHHHHHHHHC
T ss_pred hHHHHh-------cCCHHHHHHHHHh-------cCcHHHHHHHHHHHHHcCCHHHHHHHHHhhcC----ccccHHHHHHh
Confidence 455454 8999999887643 34566899999999999999999999988754 67777788888
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 004480 235 RDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDL 282 (750)
Q Consensus 235 g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 282 (750)
|+.+.-.++-+.....|- +|....++...|++++..+++.+-
T Consensus 387 g~~~~L~kl~~~a~~~~~------~n~af~~~~~lgd~~~cv~lL~~~ 428 (443)
T PF04053_consen 387 GDREKLSKLAKIAEERGD------INIAFQAALLLGDVEECVDLLIET 428 (443)
T ss_dssp T-HHHHHHHHHHHHHTT-------HHHHHHHHHHHT-HHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHccC------HHHHHHHHHHcCCHHHHHHHHHHc
Confidence 998888888877776543 455555566678888888777653
No 225
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=95.08 E-value=3.1 Score=39.22 Aligned_cols=189 Identities=8% Similarity=0.021 Sum_probs=113.5
Q ss_pred hhhHHHHHHHHhhcCChHHHHHHHHHHHHhcCChhhHHhhhhHHHHHHHHHhhhhcCchhHHHHHHHHHHhcCCCccccc
Q 004480 71 NDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLELF 150 (750)
Q Consensus 71 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~p~~~~ 150 (750)
+..+..-+....+.|++++|...|+.+.... |.+.- ...+...++.++-+.+++++|+..+++.++. .|+..
T Consensus 34 ~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~--p~s~~---~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~l--yP~~~- 105 (254)
T COG4105 34 ASELYNEGLTELQKGNYEEAIKYFEALDSRH--PFSPY---SEQAQLDLAYAYYKNGEYDLALAYIDRFIRL--YPTHP- 105 (254)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCCcc---cHHHHHHHHHHHHhcccHHHHHHHHHHHHHh--CCCCC-
Confidence 4445556667778899999999999999774 32211 2344456777888999999999999999985 33322
Q ss_pred cchhhhhhHHHHHHhhc-------cCcHHHHHHHHHHHHhCCCCCcccccHHHHHHHHHcCCChHHHHHHhhhCCCCcch
Q 004480 151 DGSGFKLLKNECQRLLD-------SGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRADIL 223 (750)
Q Consensus 151 ~~~~~~~l~~~~~~~~~-------~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~ 223 (750)
+.-+-.++.+...+.. +....+|+.-|+.++..- |++.-......+.- .+ .+..+
T Consensus 106 -n~dY~~YlkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ry--PnS~Ya~dA~~~i~-----------~~----~d~LA 167 (254)
T COG4105 106 -NADYAYYLKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRY--PNSRYAPDAKARIV-----------KL----NDALA 167 (254)
T ss_pred -ChhHHHHHHHHHHhccCCccccCHHHHHHHHHHHHHHHHHC--CCCcchhhHHHHHH-----------HH----HHHHH
Confidence 1233444444433321 122334555555555533 44332221111100 00 00011
Q ss_pred --HHHHHHHHHhcCCHHHHHHHHHHHHhCCCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 004480 224 --FCNFVREFGKKRDLVSALRAYDASKKHLSS--PNMYICRTIIDVCGICGDYMKSRAIYEDLRSQ 285 (750)
Q Consensus 224 --~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 285 (750)
=-.+...|.++|.+..|..-+++|.+.-.. -....+-.+..+|.+.|-.++|...-.-+...
T Consensus 168 ~~Em~IaryY~kr~~~~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~N 233 (254)
T COG4105 168 GHEMAIARYYLKRGAYVAAINRFEEVLENYPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGAN 233 (254)
T ss_pred HHHHHHHHHHHHhcChHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHhc
Confidence 123677899999999999999999986221 12346667777888888888887765554433
No 226
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=95.06 E-value=0.52 Score=40.05 Aligned_cols=76 Identities=9% Similarity=0.057 Sum_probs=58.1
Q ss_pred CcchhhhHHHHHHHHhhcCChHHHHHHHHHHHHhcCChhhHHhhhhHHHHHHHHHhhhhcCchhHHHHHHHHHHhcCCCc
Q 004480 67 LSSRNDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAP 146 (750)
Q Consensus 67 p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~p 146 (750)
|+.+...+..-+....+.|++++|++.|+.+....+... + ...+-..++.++.+.|++++|+..+++.++ +.|
T Consensus 6 ~~~~~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~-y----a~qAqL~l~yayy~~~~y~~A~a~~~rFir--LhP 78 (142)
T PF13512_consen 6 PDKSPQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGE-Y----AEQAQLDLAYAYYKQGDYEEAIAAYDRFIR--LHP 78 (142)
T ss_pred CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCc-c----cHHHHHHHHHHHHHccCHHHHHHHHHHHHH--hCC
Confidence 444566677788888999999999999999998843222 1 123334678889999999999999999998 556
Q ss_pred ccc
Q 004480 147 LEL 149 (750)
Q Consensus 147 ~~~ 149 (750)
++.
T Consensus 79 ~hp 81 (142)
T PF13512_consen 79 THP 81 (142)
T ss_pred CCC
Confidence 543
No 227
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=95.05 E-value=0.2 Score=46.97 Aligned_cols=78 Identities=14% Similarity=0.201 Sum_probs=45.6
Q ss_pred cccccCCCCccHHHHHHHHHHHHhcHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCH
Q 004480 504 SFDKRFSFKPTTTTYNILMKACCTDYYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQILKIMREDGMSPDV 583 (750)
Q Consensus 504 ~~~~~~~~~p~~~~~~~li~~~~~~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 583 (750)
..|+.+|+..|..+|+.+|+.+-+ ..+.|....-...+ -|-+ +-+=++.++++|...|+.||-
T Consensus 96 k~m~eyGVerDl~vYk~LlnvfPK--------------gkfiP~nvfQ~~F~-HYP~--QQ~C~I~vLeqME~hGVmPdk 158 (406)
T KOG3941|consen 96 KYMKEYGVERDLDVYKGLLNVFPK--------------GKFIPQNVFQKVFL-HYPQ--QQNCAIKVLEQMEWHGVMPDK 158 (406)
T ss_pred HHHHHhcchhhHHHHHHHHHhCcc--------------cccccHHHHHHHHh-hCch--hhhHHHHHHHHHHHcCCCCch
Confidence 457777888888888777776532 11222222111111 1111 223456677777777777777
Q ss_pred HHHHHHHHHHHHcCC
Q 004480 584 VAYTTAIKVCVRSKR 598 (750)
Q Consensus 584 ~~~~~li~~~~~~g~ 598 (750)
.+-..|+.+|++.|-
T Consensus 159 E~e~~lvn~FGr~~~ 173 (406)
T KOG3941|consen 159 EIEDILVNAFGRWNF 173 (406)
T ss_pred HHHHHHHHHhccccc
Confidence 777777777776665
No 228
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.05 E-value=2.2 Score=37.29 Aligned_cols=121 Identities=9% Similarity=0.010 Sum_probs=63.3
Q ss_pred hhccCcHHHHHHHHHHHHhCCCCCcccccHHHHHHHHHcCCChHHHHHHhhhCCCC---cch-----HHHHHHHHHhcCC
Q 004480 165 LLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRA---DIL-----FCNFVREFGKKRD 236 (750)
Q Consensus 165 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~-----~~~l~~~~~~~g~ 236 (750)
+++.+..++|+..|..+.+.|...-.............+.|+...|...|..+-.+ +.. -..-.-.+...|.
T Consensus 68 lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gs 147 (221)
T COG4649 68 LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGS 147 (221)
T ss_pred HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhcccc
Confidence 34467778888888887776644323333334444555566666666666554211 111 1112223445566
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 004480 237 LVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQ 285 (750)
Q Consensus 237 ~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 285 (750)
+++.....+-+...+-+.-...-.+|.-+--+.|++..|.+.|.++...
T Consensus 148 y~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~D 196 (221)
T COG4649 148 YDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAND 196 (221)
T ss_pred HHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHcc
Confidence 6666655555544332222333445555555666666666666666543
No 229
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=95.04 E-value=6.1 Score=42.43 Aligned_cols=52 Identities=13% Similarity=0.073 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH-CCCCCCHHHHHHHHHHHHhcCCHH
Q 004480 584 VAYTTAIKVCVRSKRLKQAFSLFEEMKH-YQIQPNLVTYITLLRARSRYGSLH 635 (750)
Q Consensus 584 ~~~~~li~~~~~~g~~~~A~~~~~~m~~-~g~~p~~~t~~~li~~~~~~g~~~ 635 (750)
..|-.|..--...|.++.|.+.--.+.+ ..+-|....|+.+.-+.|....+.
T Consensus 1022 yHFmilAQrql~eg~v~~Al~Tal~L~DYEd~lpP~eiySllALaaca~raFG 1074 (1189)
T KOG2041|consen 1022 YHFMILAQRQLFEGRVKDALQTALILSDYEDFLPPAEIYSLLALAACAVRAFG 1074 (1189)
T ss_pred HHHHHHHHHHHHhchHHHHHHHHhhhccHhhcCCHHHHHHHHHHHHhhhhhhh
Confidence 3444444555667888888776554443 235677777776665555444333
No 230
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.03 E-value=0.94 Score=41.85 Aligned_cols=206 Identities=13% Similarity=0.035 Sum_probs=113.2
Q ss_pred HHHHHHHHHhhhhcCchhHHHHHHHHHHhcCCCccccccchhhhhhHHHHHHhhccCcHHHHHHHHHHHHhCCCCCcccc
Q 004480 113 LEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELD 192 (750)
Q Consensus 113 ~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~p~~~~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 192 (750)
...+.....+|-..+++++|...|.++.+. -+.+.. . ..+ ...+++|.-+.+++... +..+.
T Consensus 31 as~yekAAvafRnAk~feKakdcLlkA~~~-yEnnrs----l----fhA------AKayEqaamLake~~kl---sEvvd 92 (308)
T KOG1585|consen 31 ASLYEKAAVAFRNAKKFEKAKDCLLKASKG-YENNRS----L----FHA------AKAYEQAAMLAKELSKL---SEVVD 92 (308)
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHHHH-HHhccc----H----HHH------HHHHHHHHHHHHHHHHh---HHHHH
Confidence 334445555677889999999999888752 111111 1 111 23345555555554431 12233
Q ss_pred cHHHHHHHHHcCCChHHHHHHhhhCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhC---C--CCCCHHHHHHHHHHHH
Q 004480 193 EEFRIVQLCVNKPDVNLAIRYACIVPRADILFCNFVREFGKKRDLVSALRAYDASKKH---L--SSPNMYICRTIIDVCG 267 (750)
Q Consensus 193 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~--~~~~~~~~~~li~~~~ 267 (750)
.+......|...|.++-|--.+++.- -....-+.++|+++|.+...- + ...-...+..+-+.+.
T Consensus 93 l~eKAs~lY~E~GspdtAAmaleKAa-----------k~lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lV 161 (308)
T KOG1585|consen 93 LYEKASELYVECGSPDTAAMALEKAA-----------KALENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLV 161 (308)
T ss_pred HHHHHHHHHHHhCCcchHHHHHHHHH-----------HHhhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhh
Confidence 34444555666666665544333210 011234566666666554321 1 0112335556666778
Q ss_pred hcCCHHHHHHHHHHHHhC----CCCccH---HHHHHHHHhhcCChHHHHHHHHHHHHc---CCCCCHhhHHHHHHHHHHc
Q 004480 268 ICGDYMKSRAIYEDLRSQ----NVTLNI---YVFNSLMNVNAHDLKFTLEVYKNMQKL---GVMADMASYNILLKACCLA 337 (750)
Q Consensus 268 ~~g~~~~A~~~~~~m~~~----g~~~~~---~~~~~ll~~~~~~~~~a~~~~~~m~~~---g~~~~~~~~~~ll~~~~~~ 337 (750)
+..++.+|-..|.+-... .-.++. +.-.+++..+..++..|...++.--+. .-+-+..+...||.+| ..
T Consensus 162 rl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ay-d~ 240 (308)
T KOG1585|consen 162 RLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAY-DE 240 (308)
T ss_pred hhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHh-cc
Confidence 888887776555443221 112333 223344445668999999999985443 2344677888888887 56
Q ss_pred CChHHHHHHHH
Q 004480 338 GNTVLAQEIYG 348 (750)
Q Consensus 338 g~~~~A~~~~~ 348 (750)
|+.+++..+..
T Consensus 241 gD~E~~~kvl~ 251 (308)
T KOG1585|consen 241 GDIEEIKKVLS 251 (308)
T ss_pred CCHHHHHHHHc
Confidence 88888877654
No 231
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=95.02 E-value=0.18 Score=37.62 Aligned_cols=54 Identities=20% Similarity=0.257 Sum_probs=26.7
Q ss_pred HHhccCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 004480 373 FADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQA 427 (750)
Q Consensus 373 ~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 427 (750)
|.+.+++++|.++++.+...+.. +...|.....++.+.|++++|.+.|+...+.
T Consensus 5 ~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~ 58 (73)
T PF13371_consen 5 YLQQEDYEEALEVLERALELDPD-DPELWLQRARCLFQLGRYEEALEDLERALEL 58 (73)
T ss_pred HHhCCCHHHHHHHHHHHHHhCcc-cchhhHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 44455555555555555544322 3444444555555555555555555555543
No 232
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=95.01 E-value=0.6 Score=47.81 Aligned_cols=66 Identities=12% Similarity=-0.059 Sum_probs=57.6
Q ss_pred CCCHhhHHHHHHHHHHcCChHHHHHHHHHHHHhhhcCCCccCH----HHHHHHHHHHHhccCHHHHHHHHHHHHHC
Q 004480 321 MADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDV----FTYSTIVKVFADAKWWQMALKVKEDMLSA 392 (750)
Q Consensus 321 ~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~g~~~~~~----~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 392 (750)
+.+...++.+..+|.+.|++++|...|++..+ +.|+. .+|..+..+|...|+.++|++.+++.++.
T Consensus 72 P~~a~a~~NLG~AL~~lGryeEAIa~f~rALe------L~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 72 VKTAEDAVNLGLSLFSKGRVKDALAQFETALE------LNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh------hCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 45677899999999999999999999999887 45664 35899999999999999999999999875
No 233
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=94.94 E-value=4.5 Score=40.35 Aligned_cols=292 Identities=12% Similarity=0.002 Sum_probs=157.7
Q ss_pred hhHHHHHHHHhh--cCChHHHHHHHHHHHHh-cCChhhHHhhhhHHHHHHHHHhhhhcCchhHHHHHHHHHHhcCCCccc
Q 004480 72 DYYADMASKLAK--DGRLEEFAMIVESVVVS-EGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLE 148 (750)
Q Consensus 72 ~~~~~l~~~~~~--~g~~~~A~~~~~~~~~~-~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~p~~ 148 (750)
.-|+.|-..++. .|+-..|.++-.+.... ..+-....+++. ..+....|++++|.+-|+.|.. .|..
T Consensus 83 rgyqALStGliAagAGda~lARkmt~~~~~llssDqepLIhlLe-------AQaal~eG~~~~Ar~kfeAMl~---dPEt 152 (531)
T COG3898 83 RGYQALSTGLIAAGAGDASLARKMTARASKLLSSDQEPLIHLLE-------AQAALLEGDYEDARKKFEAMLD---DPET 152 (531)
T ss_pred hHHHHHhhhhhhhccCchHHHHHHHHHHHhhhhccchHHHHHHH-------HHHHHhcCchHHHHHHHHHHhc---ChHH
Confidence 345555555544 47777777776665422 112222222211 1223468999999999999986 2311
Q ss_pred cccchhhhhhHHHHHHhhccCcHHHHHHHHHHHHhCCCCCcccccHHHHHHHHHcCCChHHHHHHhhhC------CCCc-
Q 004480 149 LFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIV------PRAD- 221 (750)
Q Consensus 149 ~~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~------~~~~- 221 (750)
.. .-+-..++ ...+.|..+-|..+-+..-... |.-.+.+...+...+..|+.+.|+++.+.- .++.
T Consensus 153 Rl-lGLRgLyl----eAqr~GareaAr~yAe~Aa~~A--p~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~a 225 (531)
T COG3898 153 RL-LGLRGLYL----EAQRLGAREAARHYAERAAEKA--PQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVA 225 (531)
T ss_pred HH-HhHHHHHH----HHHhcccHHHHHHHHHHHHhhc--cCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhH
Confidence 10 00111222 2233688888888888766544 777788888999999999999999987552 1111
Q ss_pred -chHHHHHHHHH---hcCCHHHHHHHHHHHHhCCCCCCHHH-HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCccHHHHHH
Q 004480 222 -ILFCNFVREFG---KKRDLVSALRAYDASKKHLSSPNMYI-CRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNS 296 (750)
Q Consensus 222 -~~~~~l~~~~~---~~g~~~~A~~~~~~~~~~~~~~~~~~-~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ 296 (750)
..-..|+.+-. -.-+...|...-.+..+ +.||..- --.-..++.+.|+..++-.+++.+-+.. |....+..
T Consensus 226 eR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~K--L~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~e--PHP~ia~l 301 (531)
T COG3898 226 ERSRAVLLTAKAMSLLDADPASARDDALEANK--LAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAE--PHPDIALL 301 (531)
T ss_pred HHHHHHHHHHHHHHHhcCChHHHHHHHHHHhh--cCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcC--CChHHHHH
Confidence 11111222111 11234555554444443 4455432 2233456778888888888888887763 33344444
Q ss_pred HHHhhcCChHHHHHHHHHHHHc-CCCC-CHhhHHHHHHHHHHcCChHHHHHHHHHHHHhhhcCCCccCHHHHHHHHHHHH
Q 004480 297 LMNVNAHDLKFTLEVYKNMQKL-GVMA-DMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFA 374 (750)
Q Consensus 297 ll~~~~~~~~~a~~~~~~m~~~-g~~~-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~g~~~~~~~~~~~li~~~~ 374 (750)
.+.+..|+. ++.-+++..+. .++| |..+.-.+..+-...|++..|..--+.... ..|....|..|...-.
T Consensus 302 Y~~ar~gdt--a~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r------~~pres~~lLlAdIee 373 (531)
T COG3898 302 YVRARSGDT--ALDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAR------EAPRESAYLLLADIEE 373 (531)
T ss_pred HHHhcCCCc--HHHHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhh------hCchhhHHHHHHHHHh
Confidence 444444432 22222222111 1122 344444555666666666666655555444 3455566665555433
Q ss_pred -hccCHHHHHHHHHHHHHC
Q 004480 375 -DAKWWQMALKVKEDMLSA 392 (750)
Q Consensus 375 -~~g~~~~a~~~~~~m~~~ 392 (750)
..|+-.++...+.+..+.
T Consensus 374 AetGDqg~vR~wlAqav~A 392 (531)
T COG3898 374 AETGDQGKVRQWLAQAVKA 392 (531)
T ss_pred hccCchHHHHHHHHHHhcC
Confidence 336666666666655543
No 234
>PRK15331 chaperone protein SicA; Provisional
Probab=94.37 E-value=0.21 Score=43.46 Aligned_cols=96 Identities=10% Similarity=-0.015 Sum_probs=61.1
Q ss_pred CcccccHHHHHHHHHcCCChHHHHHHhhhC----CCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 004480 188 VKELDEEFRIVQLCVNKPDVNLAIRYACIV----PRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTII 263 (750)
Q Consensus 188 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~----~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li 263 (750)
++........+..+-..|++++|..+|.-+ +.+...+..|...+-..+++++|+..|......+. -|...+--..
T Consensus 34 ~~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~-~dp~p~f~ag 112 (165)
T PRK15331 34 QDMMDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLK-NDYRPVFFTG 112 (165)
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc-CCCCccchHH
Confidence 333333444555566778888888777664 34455666777777777888888887776654332 2333344455
Q ss_pred HHHHhcCCHHHHHHHHHHHHh
Q 004480 264 DVCGICGDYMKSRAIYEDLRS 284 (750)
Q Consensus 264 ~~~~~~g~~~~A~~~~~~m~~ 284 (750)
.++...|+.+.|...|....+
T Consensus 113 qC~l~l~~~~~A~~~f~~a~~ 133 (165)
T PRK15331 113 QCQLLMRKAAKARQCFELVNE 133 (165)
T ss_pred HHHHHhCCHHHHHHHHHHHHh
Confidence 667777888888887777665
No 235
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=94.32 E-value=3.5 Score=36.41 Aligned_cols=133 Identities=13% Similarity=0.085 Sum_probs=78.9
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCccHHHHHHHHHhhcCChHHHHHHHHHHHHc-C
Q 004480 241 LRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKFTLEVYKNMQKL-G 319 (750)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~a~~~~~~m~~~-g 319 (750)
.+....+.+.++.|+...+..+++.+.+.|++ ..+.++...++-+|.......+-...+....+.++=-+|.++ +
T Consensus 14 lEYirSl~~~~i~~~~~L~~lli~lLi~~~~~----~~L~qllq~~Vi~DSk~lA~~LLs~~~~~~~~~Ql~lDMLkRL~ 89 (167)
T PF07035_consen 14 LEYIRSLNQHNIPVQHELYELLIDLLIRNGQF----SQLHQLLQYHVIPDSKPLACQLLSLGNQYPPAYQLGLDMLKRLG 89 (167)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCH----HHHHHHHhhcccCCcHHHHHHHHHhHccChHHHHHHHHHHHHhh
Confidence 34455566778889999999999999999998 556666777777777666655554444433333333333322 1
Q ss_pred CCCCHhhHHHHHHHHHHcCChHHHHHHHHHHHHhhhcCCCccCHHHHHHHHHHHHhccCHHHHHHHHHHHH
Q 004480 320 VMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDML 390 (750)
Q Consensus 320 ~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~g~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 390 (750)
..+..++..+...|++-+|.++.+.... .+......++.+..+.++...-..+|+-..
T Consensus 90 -----~~~~~iievLL~~g~vl~ALr~ar~~~~--------~~~~~~~~fLeAA~~~~D~~lf~~V~~ff~ 147 (167)
T PF07035_consen 90 -----TAYEEIIEVLLSKGQVLEALRYARQYHK--------VDSVPARKFLEAAANSNDDQLFYAVFRFFE 147 (167)
T ss_pred -----hhHHHHHHHHHhCCCHHHHHHHHHHcCC--------cccCCHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 1244566677777888888777765422 122223344445455555444444444333
No 236
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=94.28 E-value=2.1 Score=45.65 Aligned_cols=130 Identities=12% Similarity=-0.070 Sum_probs=65.9
Q ss_pred HHHHHhhhhcCchhHHHHHHHHHHhcC-CCccccccc--hhhhhhHHHHHHh-hccCcHHHHHHHHHHHHhCCCCCcccc
Q 004480 117 ASGIVKSIREGRIDCVVGVLKKLNELG-VAPLELFDG--SGFKLLKNECQRL-LDSGEVEMFVGLMEVLEEFRLPVKELD 192 (750)
Q Consensus 117 ~~~~~~~~~~g~~~~A~~~l~~~~~~~-~~p~~~~~~--~~~~~l~~~~~~~-~~~g~~~~A~~~~~~~~~~~~~~~~~~ 192 (750)
..++....-.|+-+.+++.+.+..+.+ +.- ....- ..|..++...... ......+.|.++++.+.+.- |+...
T Consensus 192 ~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~-~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~y--P~s~l 268 (468)
T PF10300_consen 192 LKLLSFVGFSGDRELGLRLLWEASKSENIRS-PLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKRY--PNSAL 268 (468)
T ss_pred HHHHhhcCcCCcHHHHHHHHHHHhccCCcch-HHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHhC--CCcHH
Confidence 355666667899999999998877632 211 11000 0000111111010 01445667777777777644 66555
Q ss_pred cHHHHHHHHHcCCChHHHHHHhhhCCCC--------cchHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 004480 193 EEFRIVQLCVNKPDVNLAIRYACIVPRA--------DILFCNFVREFGKKRDLVSALRAYDASKK 249 (750)
Q Consensus 193 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 249 (750)
....-++.+...|++++|++.++..-.. ...+.-++-.+.-.++|++|...|..+.+
T Consensus 269 fl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~ 333 (468)
T PF10300_consen 269 FLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLK 333 (468)
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHh
Confidence 5555556666666666666666542110 01222333444444555555555555544
No 237
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=94.25 E-value=1.8 Score=42.69 Aligned_cols=133 Identities=14% Similarity=0.229 Sum_probs=70.7
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH--h----CChHHHHHHHHHHhhcccccccCCCCCCchhhhhhhhhhhc
Q 004480 414 VEQAMHLFEEMLQAGCEPNSQCCNILLQACVE--A----CQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDK 487 (750)
Q Consensus 414 ~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~--~----g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 487 (750)
+++...+++.|.+.|++-+..+|-+..-.... . ....+|..+|+.|++...-.
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fL--------------------- 136 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFL--------------------- 136 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccc---------------------
Confidence 44566777888888887777666553333222 1 22455677777776653211
Q ss_pred ccccCCCCccCCCccccccccCCCCccHHHHHHHHHHHHhc----HHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHcC-
Q 004480 488 QSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTD----YYRVKALMNEMRTVGLSPNHI-SWTILIDACGGS- 561 (750)
Q Consensus 488 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~----~~~a~~l~~~m~~~~~~p~~~-~~~~li~~~~~~- 561 (750)
..++...+..++..-..+ .+.++..|+.+.+.|+..+.. -+.+-+-+++..
T Consensus 137 -----------------------Ts~~D~~~a~lLA~~~~~~e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~ 193 (297)
T PF13170_consen 137 -----------------------TSPEDYPFAALLAMTSEDVEELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGD 193 (297)
T ss_pred -----------------------cCccchhHHHHHhcccccHHHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhcccc
Confidence 145555566665553332 355666666666666655332 222222222221
Q ss_pred CC--HHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 004480 562 GN--VEGALQILKIMREDGMSPDVVAYTTAI 590 (750)
Q Consensus 562 g~--~~~A~~~~~~m~~~g~~p~~~~~~~li 590 (750)
.. +..+..+++.+.+.|+++....|..+.
T Consensus 194 ~~~~v~r~~~l~~~l~~~~~kik~~~yp~lG 224 (297)
T PF13170_consen 194 DQEKVARVIELYNALKKNGVKIKYMHYPTLG 224 (297)
T ss_pred chHHHHHHHHHHHHHHHcCCccccccccHHH
Confidence 11 335666666666666666665555443
No 238
>PRK11906 transcriptional regulator; Provisional
Probab=94.20 E-value=4.1 Score=42.10 Aligned_cols=111 Identities=11% Similarity=0.105 Sum_probs=76.1
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-ccHHHHHHHHHhhcCChHHHHHHHH
Q 004480 235 RDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVT-LNIYVFNSLMNVNAHDLKFTLEVYK 313 (750)
Q Consensus 235 g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-~~~~~~~~ll~~~~~~~~~a~~~~~ 313 (750)
....+|.+.-+...+.+. -|..+...+..++...++++.|...|++....+.. ++...|..++..++|+.++|.+.++
T Consensus 318 ~~~~~a~~~A~rAveld~-~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~ 396 (458)
T PRK11906 318 LAAQKALELLDYVSDITT-VDGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICID 396 (458)
T ss_pred HHHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 455667777777777543 46777777777777788899999999988876433 4567788888888899999988888
Q ss_pred HHHHcCCCCCH---hhHHHHHHHHHHcCChHHHHHHHHH
Q 004480 314 NMQKLGVMADM---ASYNILLKACCLAGNTVLAQEIYGE 349 (750)
Q Consensus 314 ~m~~~g~~~~~---~~~~~ll~~~~~~g~~~~A~~~~~~ 349 (750)
+..+. .|.. ......++.|+.. .++.|.++|-+
T Consensus 397 ~alrL--sP~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 432 (458)
T PRK11906 397 KSLQL--EPRRRKAVVIKECVDMYVPN-PLKNNIKLYYK 432 (458)
T ss_pred HHhcc--CchhhHHHHHHHHHHHHcCC-chhhhHHHHhh
Confidence 86654 2332 2333344456544 46677776654
No 239
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.88 E-value=13 Score=41.25 Aligned_cols=55 Identities=11% Similarity=0.074 Sum_probs=40.5
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCChHHHHHHHHHHh
Q 004480 402 SSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWT 460 (750)
Q Consensus 402 ~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~ 460 (750)
--++..+.+..+.+.+..+.+..-+ -++..|-.++..+++.+..+...++..++.
T Consensus 709 ~dl~~~~~q~~d~E~~it~~~~~g~----~~p~l~~~~L~yF~~~~~i~~~~~~v~~vl 763 (933)
T KOG2114|consen 709 QDLMLYFQQISDPETVITLCERLGK----EDPSLWLHALKYFVSEESIEDCYEIVYKVL 763 (933)
T ss_pred HHHHHHHHHhhChHHHHHHHHHhCc----cChHHHHHHHHHHhhhcchhhHHHHHHHHH
Confidence 3566777777888888777776643 378889999999999987777666555544
No 240
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.86 E-value=0.68 Score=43.87 Aligned_cols=102 Identities=12% Similarity=0.030 Sum_probs=76.4
Q ss_pred hHHHHHHHHhhcCChHHHHHHHHHHHHhcCChhhHHhhhhHHHHHHHHHhhhhcCchhHHHHHHHHHHhcCCCccccccc
Q 004480 73 YYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLELFDG 152 (750)
Q Consensus 73 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~p~~~~~~ 152 (750)
.|. .+-.+.+.|++.+|...|...++..+.-. + .....-+++..+..+|++++|...|..+.+. .|+..
T Consensus 144 ~Y~-~A~~~~ksgdy~~A~~~F~~fi~~YP~s~-~----~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~--~P~s~--- 212 (262)
T COG1729 144 LYN-AALDLYKSGDYAEAEQAFQAFIKKYPNST-Y----TPNAYYWLGESLYAQGDYEDAAYIFARVVKD--YPKSP--- 212 (262)
T ss_pred HHH-HHHHHHHcCCHHHHHHHHHHHHHcCCCCc-c----cchhHHHHHHHHHhcccchHHHHHHHHHHHh--CCCCC---
Confidence 444 44455678999999999999999854311 1 2444456777889999999999999999984 44333
Q ss_pred hhhhhhHHHHHHhhccCcHHHHHHHHHHHHhCC
Q 004480 153 SGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFR 185 (750)
Q Consensus 153 ~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~ 185 (750)
..-+.+++....+.+.|+.++|...|+++.+.-
T Consensus 213 KApdallKlg~~~~~l~~~d~A~atl~qv~k~Y 245 (262)
T COG1729 213 KAPDALLKLGVSLGRLGNTDEACATLQQVIKRY 245 (262)
T ss_pred CChHHHHHHHHHHHHhcCHHHHHHHHHHHHHHC
Confidence 233567777777888999999999999988755
No 241
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=93.60 E-value=1.9 Score=35.62 Aligned_cols=86 Identities=13% Similarity=0.046 Sum_probs=56.3
Q ss_pred HHcCCChHHHHHHhhh----CCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH---HHHHHHHHHHhcCCHH
Q 004480 201 CVNKPDVNLAIRYACI----VPRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMY---ICRTIIDVCGICGDYM 273 (750)
Q Consensus 201 ~~~~~~~~~A~~~~~~----~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~---~~~~li~~~~~~g~~~ 273 (750)
+...|+++.|++.|.+ .|....+||+-..++.-.|+.++|+.-+++..+..-..... +|..-...|...|+-+
T Consensus 53 laE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~dd 132 (175)
T KOG4555|consen 53 LAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGNDD 132 (175)
T ss_pred HHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCchH
Confidence 3444555555555544 35666788888888888888888888888777643222222 3333344577778888
Q ss_pred HHHHHHHHHHhCC
Q 004480 274 KSRAIYEDLRSQN 286 (750)
Q Consensus 274 ~A~~~~~~m~~~g 286 (750)
.|..-|+..-+.|
T Consensus 133 ~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 133 AARADFEAAAQLG 145 (175)
T ss_pred HHHHhHHHHHHhC
Confidence 8888888776665
No 242
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=93.58 E-value=7.9 Score=41.27 Aligned_cols=41 Identities=7% Similarity=0.004 Sum_probs=26.7
Q ss_pred HHHHHHHHHHhCCCCCcccccHHHHHHHHHcCCChHHHHHHhhhC
Q 004480 173 MFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIV 217 (750)
Q Consensus 173 ~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 217 (750)
+-+.-++++.+.+..|++. .+...|+-.|++.+|-++|.+-
T Consensus 618 ~li~EL~~~k~rge~P~~i----LlA~~~Ay~gKF~EAAklFk~~ 658 (1081)
T KOG1538|consen 618 ELISELEERKKRGETPNDL----LLADVFAYQGKFHEAAKLFKRS 658 (1081)
T ss_pred HHHHHHHHHHhcCCCchHH----HHHHHHHhhhhHHHHHHHHHHc
Confidence 3344466667777656543 3556677788888888887664
No 243
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=93.52 E-value=9.7 Score=38.71 Aligned_cols=78 Identities=10% Similarity=0.002 Sum_probs=49.2
Q ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHhCC---CCCCHHHHHHHHHHHHh---cCCHHHHHHHHHHHHhCCCCccHHHHH
Q 004480 222 ILFCNFVREFGKKRDLVSALRAYDASKKHL---SSPNMYICRTIIDVCGI---CGDYMKSRAIYEDLRSQNVTLNIYVFN 295 (750)
Q Consensus 222 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~~~~~li~~~~~---~g~~~~A~~~~~~m~~~g~~~~~~~~~ 295 (750)
.+...++-.|....+|+..+++.+.+...- +.-...+-....-++.+ .|+.++|++++..+....-.++..+|.
T Consensus 142 div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~g 221 (374)
T PF13281_consen 142 DIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLG 221 (374)
T ss_pred hHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHH
Confidence 344456666888899999999999887631 10112222233344555 688899999888866555556666665
Q ss_pred HHHH
Q 004480 296 SLMN 299 (750)
Q Consensus 296 ~ll~ 299 (750)
.+-+
T Consensus 222 L~GR 225 (374)
T PF13281_consen 222 LLGR 225 (374)
T ss_pred HHHH
Confidence 5443
No 244
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=93.48 E-value=0.16 Score=33.37 Aligned_cols=35 Identities=9% Similarity=0.128 Sum_probs=30.0
Q ss_pred hhHHHHHHHHhhcCChHHHHHHHHHHHHhcCChhhHH
Q 004480 72 DYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFA 108 (750)
Q Consensus 72 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~ 108 (750)
..+..++..+.+.|++++|+.+|+++++. .|+...
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~--~P~~~~ 36 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALAL--DPDDPE 36 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CcCCHH
Confidence 46778999999999999999999999999 555443
No 245
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=93.23 E-value=3.5 Score=41.48 Aligned_cols=128 Identities=13% Similarity=0.109 Sum_probs=89.5
Q ss_pred HHHHHcCChHHHHHHHHHHHHhhhcCC----------CccCHHHHHHHHHHHHhccCHHHHHHHHHHHHHCCCCCCHHHH
Q 004480 332 KACCLAGNTVLAQEIYGEVKHLEAKGV----------LKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITW 401 (750)
Q Consensus 332 ~~~~~~g~~~~A~~~~~~~~~~~~~g~----------~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~ 401 (750)
+.|.+.|++..|...|+.......... ...-..+++.+..++.+.+++.+|++.....+..+ ++|....
T Consensus 216 n~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~-~~N~KAL 294 (397)
T KOG0543|consen 216 NVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELD-PNNVKAL 294 (397)
T ss_pred hHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcC-CCchhHH
Confidence 355666777777666666443221100 01223568888899999999999999999999886 4577777
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH-hCC-hHHHHHHHHHHhhc
Q 004480 402 SSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVE-ACQ-FDRAFRLFRSWTLS 462 (750)
Q Consensus 402 ~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~-~g~-~~~A~~~~~~~~~~ 462 (750)
---..+|...|+++.|...|+++++. .|+...-+.=+..|.+ ... .+...++|..|-..
T Consensus 295 yRrG~A~l~~~e~~~A~~df~ka~k~--~P~Nka~~~el~~l~~k~~~~~~kekk~y~~mF~k 355 (397)
T KOG0543|consen 295 YRRGQALLALGEYDLARDDFQKALKL--EPSNKAARAELIKLKQKIREYEEKEKKMYANMFAK 355 (397)
T ss_pred HHHHHHHHhhccHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 77888999999999999999999986 6766655554444433 333 34457788887654
No 246
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=93.10 E-value=1.1 Score=44.85 Aligned_cols=114 Identities=16% Similarity=0.085 Sum_probs=64.4
Q ss_pred HHHHHHHHhhcCChHHHHHHHHHHHHhc-----CChhh--HHhhhhHHHHHHHHHhhhhcCchhHHHHHHHHHHhcCCCc
Q 004480 74 YADMASKLAKDGRLEEFAMIVESVVVSE-----GNVSK--FASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAP 146 (750)
Q Consensus 74 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~-----~~p~~--~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~p 146 (750)
...-+..+-+.|+|..|...|++++..= .++.. -..-+......++...+.+.+++..|++.-.+.++ +.|
T Consensus 211 ~ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe--~~~ 288 (397)
T KOG0543|consen 211 KKERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLE--LDP 288 (397)
T ss_pred HHHhhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHh--cCC
Confidence 3445668899999999999999877541 11111 11112233334555566677777777777776665 334
Q ss_pred cccccchhhhhhHHHHHHhhccCcHHHHHHHHHHHHhCCCCCcccccHHHH
Q 004480 147 LELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRI 197 (750)
Q Consensus 147 ~~~~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l 197 (750)
++. -.|.+-..++...|+++.|+..|+++++.. |.+......+
T Consensus 289 ~N~------KALyRrG~A~l~~~e~~~A~~df~ka~k~~--P~Nka~~~el 331 (397)
T KOG0543|consen 289 NNV------KALYRRGQALLALGEYDLARDDFQKALKLE--PSNKAARAEL 331 (397)
T ss_pred Cch------hHHHHHHHHHHhhccHHHHHHHHHHHHHhC--CCcHHHHHHH
Confidence 322 233333333444667777777777766633 5554433333
No 247
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=93.02 E-value=0.071 Score=32.68 Aligned_cols=31 Identities=16% Similarity=0.285 Sum_probs=28.1
Q ss_pred hhccccCCcchhhhHHHHHHHHhhcCChHHHH
Q 004480 60 LSTVRRDLSSRNDYYADMASKLAKDGRLEEFA 91 (750)
Q Consensus 60 ~~~l~~~p~~~~~~~~~l~~~~~~~g~~~~A~ 91 (750)
.+.++.+|++ ..+|..++..|...|++++|+
T Consensus 3 ~kAie~~P~n-~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 3 KKAIELNPNN-AEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred HHHHHHCCCC-HHHHHHHHHHHHHCcCHHhhc
Confidence 3568899999 999999999999999999986
No 248
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=93.00 E-value=10 Score=37.42 Aligned_cols=177 Identities=10% Similarity=-0.007 Sum_probs=98.3
Q ss_pred hhhcCchhHHHHHHHHHHhcCCCccccccchhhhhhHHHHHHhhccC-cHHHHHHHHHHHHhC----CC-CCcccccHHH
Q 004480 123 SIREGRIDCVVGVLKKLNELGVAPLELFDGSGFKLLKNECQRLLDSG-EVEMFVGLMEVLEEF----RL-PVKELDEEFR 196 (750)
Q Consensus 123 ~~~~g~~~~A~~~l~~~~~~~~~p~~~~~~~~~~~l~~~~~~~~~~g-~~~~A~~~~~~~~~~----~~-~~~~~~~~~~ 196 (750)
..++|+.+.|..++.++.......++.....+...+.+....+...+ ++++|...+++..+. +. ...... ..
T Consensus 3 A~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~-~~- 80 (278)
T PF08631_consen 3 AWKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPD-GS- 80 (278)
T ss_pred chhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCc-HH-
Confidence 35899999999999998764312222222344445555555556677 888998888875542 10 000000 00
Q ss_pred HHHHHHcCCChHHHHHHhhhCCCCcchHHHHHHHHHhcCCHH---HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHH
Q 004480 197 IVQLCVNKPDVNLAIRYACIVPRADILFCNFVREFGKKRDLV---SALRAYDASKKHLSSPNMYICRTIIDVCGICGDYM 273 (750)
Q Consensus 197 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~l~~~~~~~g~~~---~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 273 (750)
-++ ..++..++.+|...+..+ +|.++.+.+...... ...++-.-+..+.+.++.+
T Consensus 81 -------------elr--------~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~-~~~~~~L~l~il~~~~~~~ 138 (278)
T PF08631_consen 81 -------------ELR--------LSILRLLANAYLEWDTYESVEKALNALRLLESEYGN-KPEVFLLKLEILLKSFDEE 138 (278)
T ss_pred -------------HHH--------HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCC-CcHHHHHHHHHHhccCChh
Confidence 000 134556777777766554 455566666543322 2445555566666688899
Q ss_pred HHHHHHHHHHhCCCCccHHHHHHHHHh----hcCChHHHHHHHHHHHHcCCCCCH
Q 004480 274 KSRAIYEDLRSQNVTLNIYVFNSLMNV----NAHDLKFTLEVYKNMQKLGVMADM 324 (750)
Q Consensus 274 ~A~~~~~~m~~~g~~~~~~~~~~ll~~----~~~~~~~a~~~~~~m~~~g~~~~~ 324 (750)
++.+.+.+|...-..+ ...+..++.. .......+...++.+....+.|..
T Consensus 139 ~~~~~L~~mi~~~~~~-e~~~~~~l~~i~~l~~~~~~~a~~~ld~~l~~r~~~~~ 192 (278)
T PF08631_consen 139 EYEEILMRMIRSVDHS-ESNFDSILHHIKQLAEKSPELAAFCLDYLLLNRFKSSE 192 (278)
T ss_pred HHHHHHHHHHHhcccc-cchHHHHHHHHHHHHhhCcHHHHHHHHHHHHHHhCCCh
Confidence 9999999998762211 2223333322 223455666666666554444443
No 249
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=92.97 E-value=17 Score=41.98 Aligned_cols=22 Identities=14% Similarity=0.133 Sum_probs=10.0
Q ss_pred HHHHHHHhccCHHHHHHHHHHH
Q 004480 368 TIVKVFADAKWWQMALKVKEDM 389 (750)
Q Consensus 368 ~li~~~~~~g~~~~a~~~~~~m 389 (750)
.|+.-+...++.-+|-++..+-
T Consensus 1004 ~L~s~L~e~~kh~eAa~il~e~ 1025 (1265)
T KOG1920|consen 1004 ELVSRLVEQRKHYEAAKILLEY 1025 (1265)
T ss_pred HHHHHHHHcccchhHHHHHHHH
Confidence 3444444444444444444443
No 250
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=92.76 E-value=1.2 Score=42.15 Aligned_cols=92 Identities=11% Similarity=0.020 Sum_probs=51.2
Q ss_pred hhccCcHHHHHHHHHHHHhCCCCCcccccHHHHHHHHHcCCChHHHHHHhhhCCCCcchHHHHHHHHHhcCCHHHHHHHH
Q 004480 165 LLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRADILFCNFVREFGKKRDLVSALRAY 244 (750)
Q Consensus 165 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 244 (750)
+...|++.+|...|...++.. |.+.. ...++.-|...+...|++++|..+|
T Consensus 151 ~~ksgdy~~A~~~F~~fi~~Y--P~s~~---------------------------~~nA~yWLGe~~y~qg~y~~Aa~~f 201 (262)
T COG1729 151 LYKSGDYAEAEQAFQAFIKKY--PNSTY---------------------------TPNAYYWLGESLYAQGDYEDAAYIF 201 (262)
T ss_pred HHHcCCHHHHHHHHHHHHHcC--CCCcc---------------------------cchhHHHHHHHHHhcccchHHHHHH
Confidence 334677777777777666644 33221 1134445566666666666666666
Q ss_pred HHHHhCCCC-C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 004480 245 DASKKHLSS-P-NMYICRTIIDVCGICGDYMKSRAIYEDLRSQ 285 (750)
Q Consensus 245 ~~~~~~~~~-~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 285 (750)
..+.+..+. | -...+--|.....+.|+.++|...|+++.++
T Consensus 202 ~~~~k~~P~s~KApdallKlg~~~~~l~~~d~A~atl~qv~k~ 244 (262)
T COG1729 202 ARVVKDYPKSPKAPDALLKLGVSLGRLGNTDEACATLQQVIKR 244 (262)
T ss_pred HHHHHhCCCCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 666554322 1 1244555555566666666666666666655
No 251
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=92.62 E-value=3.2 Score=44.36 Aligned_cols=168 Identities=13% Similarity=-0.008 Sum_probs=103.7
Q ss_pred hHHHHHHHHhhcCChHHHHHHHHHHHHhcCChhhHHhhhhHHHHHHHHHhhh----hcCchhHHHHHHHHHHhcCCCccc
Q 004480 73 YYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSI----REGRIDCVVGVLKKLNELGVAPLE 148 (750)
Q Consensus 73 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~----~~g~~~~A~~~l~~~~~~~~~p~~ 148 (750)
.+..+++...=.|+=+.+++++....+.+ .....-..+.+-.+...+..++ .....+.|.++++.+.+ ..|+.
T Consensus 190 ~~~kll~~vGF~gdR~~GL~~L~~~~~~~-~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~--~yP~s 266 (468)
T PF10300_consen 190 KVLKLLSFVGFSGDRELGLRLLWEASKSE-NIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLK--RYPNS 266 (468)
T ss_pred HHHHHHhhcCcCCcHHHHHHHHHHHhccC-CcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHH--hCCCc
Confidence 45566666677899999999999877643 2222222222222233333333 25677789999999997 46654
Q ss_pred cccchhhhhhHHHHHHhhccCcHHHHHHHHHHHHh--CCCCCcccccHHHHHHHHHcCCChHHHHHHhhhCCCCc----c
Q 004480 149 LFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEE--FRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRAD----I 222 (750)
Q Consensus 149 ~~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~----~ 222 (750)
. ++..... ..+...|+.++|++.|++... ..++.-....+..++-.+....++++|...|..+.... .
T Consensus 267 ~----lfl~~~g--R~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~WSka 340 (468)
T PF10300_consen 267 A----LFLFFEG--RLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESKWSKA 340 (468)
T ss_pred H----HHHHHHH--HHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhccccHHH
Confidence 3 3332222 223338999999999997663 23333344556667778888999999999988864322 2
Q ss_pred hHH-HHHHHHHhcCCH-------HHHHHHHHHHHh
Q 004480 223 LFC-NFVREFGKKRDL-------VSALRAYDASKK 249 (750)
Q Consensus 223 ~~~-~l~~~~~~~g~~-------~~A~~~~~~~~~ 249 (750)
.|. .....+...|+. ++|..+|.++..
T Consensus 341 ~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 341 FYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred HHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHH
Confidence 222 234445566766 777777776543
No 252
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.48 E-value=21 Score=39.71 Aligned_cols=181 Identities=13% Similarity=0.096 Sum_probs=118.9
Q ss_pred hhHHHHHHHHhhcCChHHHHHHHHHHHHhcCChhhHHhhhhHHHHHHHHHhhhhcCchhHHHHHHHHHHhcCCCcccccc
Q 004480 72 DYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLELFD 151 (750)
Q Consensus 72 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~p~~~~~ 151 (750)
.....-+..+.+-..++-|+.+.+. .+.+++... ...-.-+..+.+.|++++|...|-+.+.. ++|+.
T Consensus 335 k~le~kL~iL~kK~ly~~Ai~LAk~---~~~d~d~~~-----~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~s~--- 402 (933)
T KOG2114|consen 335 KDLETKLDILFKKNLYKVAINLAKS---QHLDEDTLA-----EIHRKYGDYLYGKGDFDEATDQYIETIGF-LEPSE--- 402 (933)
T ss_pred ccHHHHHHHHHHhhhHHHHHHHHHh---cCCCHHHHH-----HHHHHHHHHHHhcCCHHHHHHHHHHHccc-CChHH---
Confidence 3445556677777777777766543 233333221 11122333456899999999999877753 45522
Q ss_pred chhhhhhHHHHHHhhccCcHHHHHHHHHHHHhCCCCCcccccHHHHHHHHHcCCChHHHHHHhhhCCCCcch--HHHHHH
Q 004480 152 GSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRADIL--FCNFVR 229 (750)
Q Consensus 152 ~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~--~~~l~~ 229 (750)
.+..+.+..+..+-..+++.+.+.|... ..-...|+.+|.+.++.++-.++.+..+..... ....+.
T Consensus 403 ---------Vi~kfLdaq~IknLt~YLe~L~~~gla~--~dhttlLLncYiKlkd~~kL~efI~~~~~g~~~fd~e~al~ 471 (933)
T KOG2114|consen 403 ---------VIKKFLDAQRIKNLTSYLEALHKKGLAN--SDHTTLLLNCYIKLKDVEKLTEFISKCDKGEWFFDVETALE 471 (933)
T ss_pred ---------HHHHhcCHHHHHHHHHHHHHHHHccccc--chhHHHHHHHHHHhcchHHHHHHHhcCCCcceeeeHHHHHH
Confidence 1224455778888888999999988554 334567899999999999988888887744333 445666
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 004480 230 EFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLR 283 (750)
Q Consensus 230 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 283 (750)
.+.+.+-.++|..+-.... .+.+....++. ..+++++|++.+..+.
T Consensus 472 Ilr~snyl~~a~~LA~k~~-----~he~vl~ille---~~~ny~eAl~yi~slp 517 (933)
T KOG2114|consen 472 ILRKSNYLDEAELLATKFK-----KHEWVLDILLE---DLHNYEEALRYISSLP 517 (933)
T ss_pred HHHHhChHHHHHHHHHHhc-----cCHHHHHHHHH---HhcCHHHHHHHHhcCC
Confidence 6777777777776655443 24555555554 5688999999988764
No 253
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=92.39 E-value=20 Score=40.13 Aligned_cols=111 Identities=13% Similarity=-0.024 Sum_probs=64.3
Q ss_pred hhhHHHHHHHHhhcCChHHHHHHHHHHHHhcCChhhHHhhhhHHHHHHH-HHhhhhcCchhHHHHHHHHHHhcCCCcccc
Q 004480 71 NDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASG-IVKSIREGRIDCVVGVLKKLNELGVAPLEL 149 (750)
Q Consensus 71 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~-~~~~~~~g~~~~A~~~l~~~~~~~~~p~~~ 149 (750)
+.....-+-....++++++|..++.++...-..|.....-.....+..+ .......|+++.|.++.+..+..=......
T Consensus 415 P~Lvll~aW~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~ 494 (894)
T COG2909 415 PRLVLLQAWLLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYR 494 (894)
T ss_pred chHHHHHHHHHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccch
Confidence 4444444566778899999999999887653333221111111111111 112346899999999999988752222222
Q ss_pred ccchhhhhhHHHHHHhhccCcHHHHHHHHHHHHhC
Q 004480 150 FDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEF 184 (750)
Q Consensus 150 ~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~ 184 (750)
+-...+.++..+... .|++++|..+.....+.
T Consensus 495 ~r~~~~sv~~~a~~~---~G~~~~Al~~~~~a~~~ 526 (894)
T COG2909 495 SRIVALSVLGEAAHI---RGELTQALALMQQAEQM 526 (894)
T ss_pred hhhhhhhhhhHHHHH---hchHHHHHHHHHHHHHH
Confidence 223344444444333 79999999888766553
No 254
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=92.12 E-value=7.2 Score=33.62 Aligned_cols=42 Identities=19% Similarity=0.182 Sum_probs=18.2
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 004480 226 NFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGI 268 (750)
Q Consensus 226 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~ 268 (750)
.++..+.+.+........++.+...+. .+...++.++..|++
T Consensus 12 ~vv~~~~~~~~~~~l~~yLe~~~~~~~-~~~~~~~~li~ly~~ 53 (140)
T smart00299 12 EVVELFEKRNLLEELIPYLESALKLNS-ENPALQTKLIELYAK 53 (140)
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHccCc-cchhHHHHHHHHHHH
Confidence 344444444444444444444444332 333344444444443
No 255
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=92.00 E-value=5.5 Score=39.27 Aligned_cols=207 Identities=14% Similarity=0.076 Sum_probs=111.9
Q ss_pred hhhhHHHHHHHHhhcCChHHHHHHHHHHHHhcCChhhHHhhhhHHHHHHHHHhhhhcCchhHHHHHHHHHHhc-CCCccc
Q 004480 70 RNDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNEL-GVAPLE 148 (750)
Q Consensus 70 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~-~~~p~~ 148 (750)
.-..|..+..+..+.|++++++...-.-+....+ .-+.......+-++.+.+-+--++.+++.+-.+-... |..|..
T Consensus 42 Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~--~~ds~~~~ea~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~ 119 (518)
T KOG1941|consen 42 RFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARE--LEDSDFLLEAYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQ 119 (518)
T ss_pred HHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCccc
Confidence 3456666777888888888887654333322111 1111112333345555555666666666665554432 333321
Q ss_pred cccchhhhhhHHHHHHhhccCcHHHHHHHHHHHHhCCCC----CcccccHHHHHHHHHcCCChHHHHHHhhhC-------
Q 004480 149 LFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLP----VKELDEEFRIVQLCVNKPDVNLAIRYACIV------- 217 (750)
Q Consensus 149 ~~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~------- 217 (750)
... ....++.++. ...+.++++++.|+......-. .-....+-.++..|.+..++++|.-+....
T Consensus 120 ~~g-q~~l~~~~Ah---lgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~ 195 (518)
T KOG1941|consen 120 LGG-QVSLSMGNAH---LGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSY 195 (518)
T ss_pred ccc-hhhhhHHHHh---hhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhc
Confidence 111 1112233332 2257788888888876543211 223344556777788888888776654332
Q ss_pred C-CCc------chHHHHHHHHHhcCCHHHHHHHHHHHHh----CCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 004480 218 P-RAD------ILFCNFVREFGKKRDLVSALRAYDASKK----HLSSP-NMYICRTIIDVCGICGDYMKSRAIYEDL 282 (750)
Q Consensus 218 ~-~~~------~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m 282 (750)
. .+. .+...+..++...|++.+|.+.-++..+ .|-.+ -....-.+.+.|...|+.+.|+.-|++.
T Consensus 196 ~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~A 272 (518)
T KOG1941|consen 196 GLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQA 272 (518)
T ss_pred CcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHH
Confidence 1 111 2344455667777777777766665433 23222 2334456667777788888877777654
No 256
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.81 E-value=3.7 Score=39.96 Aligned_cols=151 Identities=10% Similarity=-0.081 Sum_probs=80.1
Q ss_pred hhhcCchhHHHHHHHHHHhcCCCccccccchhhhhhHHHHHHhhccCcHHHHHHHHHHHHhC-CCCCcccccHHHHHHH-
Q 004480 123 SIREGRIDCVVGVLKKLNELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEF-RLPVKELDEEFRIVQL- 200 (750)
Q Consensus 123 ~~~~g~~~~A~~~l~~~~~~~~~p~~~~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~~l~~~- 200 (750)
+.-+|...+|...++++++. .|... ..+...-.++.. .|+.+.-...++++... +...+-..+...+...
T Consensus 113 ~~~~g~~h~a~~~wdklL~d--~PtDl---la~kfsh~a~fy---~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFg 184 (491)
T KOG2610|consen 113 LWGRGKHHEAAIEWDKLLDD--YPTDL---LAVKFSHDAHFY---NGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFG 184 (491)
T ss_pred hhccccccHHHHHHHHHHHh--Cchhh---hhhhhhhhHHHh---ccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhh
Confidence 34677777777777777763 33222 233333444444 56666667777776643 2111111223333332
Q ss_pred HHcCCChHHHHHHhhhC----CCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC----HHHHHHHHHHHHhcCCH
Q 004480 201 CVNKPDVNLAIRYACIV----PRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPN----MYICRTIIDVCGICGDY 272 (750)
Q Consensus 201 ~~~~~~~~~A~~~~~~~----~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~----~~~~~~li~~~~~~g~~ 272 (750)
+...|-+++|++...+. +.+..+..++...+.-.|++.++.+...+-...--..+ ..-|..-+ .+...+.+
T Consensus 185 L~E~g~y~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al-~~iE~aey 263 (491)
T KOG2610|consen 185 LEECGIYDDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTAL-FHIEGAEY 263 (491)
T ss_pred HHHhccchhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHH-hhhcccch
Confidence 33577777777765553 33335555566667777777777776554322111111 11222222 24555788
Q ss_pred HHHHHHHHHH
Q 004480 273 MKSRAIYEDL 282 (750)
Q Consensus 273 ~~A~~~~~~m 282 (750)
+.|+++|+.=
T Consensus 264 e~aleIyD~e 273 (491)
T KOG2610|consen 264 EKALEIYDRE 273 (491)
T ss_pred hHHHHHHHHH
Confidence 8888888753
No 257
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=91.77 E-value=17 Score=37.08 Aligned_cols=81 Identities=11% Similarity=-0.053 Sum_probs=50.8
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHhhhcCCCccCHHHHHHHHHHHHh---ccCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 004480 328 NILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFAD---AKWWQMALKVKEDMLSAGVTPNTITWSSL 404 (750)
Q Consensus 328 ~~ll~~~~~~g~~~~A~~~~~~~~~~~~~g~~~~~~~~~~~li~~~~~---~g~~~~a~~~~~~m~~~g~~p~~~~~~~l 404 (750)
..++-+|....+++...++++.+....... +.-....--...-++-+ .|+.++|++++..+....-.++..+|..+
T Consensus 145 ~~lllSyRdiqdydamI~Lve~l~~~p~~~-~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~ 223 (374)
T PF13281_consen 145 INLLLSYRDIQDYDAMIKLVETLEALPTCD-VANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLL 223 (374)
T ss_pred HHHHHHhhhhhhHHHHHHHHHHhhccCccc-hhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHH
Confidence 345556888888888888888887620000 01111222233444556 78888999888886655556777788777
Q ss_pred HHHHH
Q 004480 405 INACA 409 (750)
Q Consensus 405 i~~~~ 409 (750)
...|.
T Consensus 224 GRIyK 228 (374)
T PF13281_consen 224 GRIYK 228 (374)
T ss_pred HHHHH
Confidence 76654
No 258
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=91.73 E-value=2.1 Score=41.33 Aligned_cols=77 Identities=18% Similarity=0.197 Sum_probs=53.0
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-----HCCCCCCHHHHHHH
Q 004480 550 SWTILIDACGGSGNVEGALQILKIMREDGMSPDVVAYTTAIKVCVRSKRLKQAFSLFEEMK-----HYQIQPNLVTYITL 624 (750)
Q Consensus 550 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-----~~g~~p~~~t~~~l 624 (750)
++..++..+...|+.+.+...++++.... +-|...|..+|.+|.+.|+...|+..|+.+. +.|+.|...+....
T Consensus 155 ~l~~lae~~~~~~~~~~~~~~l~~Li~~d-p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~y 233 (280)
T COG3629 155 ALTKLAEALIACGRADAVIEHLERLIELD-PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRALY 233 (280)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHHH
Confidence 45566777777777777777777777653 2267777777888888888777777777665 35666666655555
Q ss_pred HHH
Q 004480 625 LRA 627 (750)
Q Consensus 625 i~~ 627 (750)
...
T Consensus 234 ~~~ 236 (280)
T COG3629 234 EEI 236 (280)
T ss_pred HHH
Confidence 544
No 259
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=91.71 E-value=8 Score=33.32 Aligned_cols=25 Identities=16% Similarity=0.111 Sum_probs=13.2
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHH
Q 004480 550 SWTILIDACGGSGNVEGALQILKIM 574 (750)
Q Consensus 550 ~~~~li~~~~~~g~~~~A~~~~~~m 574 (750)
....++..|.+.+.++++.-++.++
T Consensus 71 d~~~~~~~c~~~~l~~~~~~l~~k~ 95 (140)
T smart00299 71 DIEKVGKLCEKAKLYEEAVELYKKD 95 (140)
T ss_pred CHHHHHHHHHHcCcHHHHHHHHHhh
Confidence 3344555555555555555555554
No 260
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=91.50 E-value=5.9 Score=41.75 Aligned_cols=27 Identities=30% Similarity=0.354 Sum_probs=13.9
Q ss_pred CHhhHHHHHHHHHHcCChHHHHHHHHH
Q 004480 323 DMASYNILLKACCLAGNTVLAQEIYGE 349 (750)
Q Consensus 323 ~~~~~~~ll~~~~~~g~~~~A~~~~~~ 349 (750)
+...|..|.+...+.|+++-|++.|.+
T Consensus 346 ~~~~W~~Lg~~AL~~g~~~lAe~c~~k 372 (443)
T PF04053_consen 346 DPEKWKQLGDEALRQGNIELAEECYQK 372 (443)
T ss_dssp THHHHHHHHHHHHHTTBHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 344555555555555555555555544
No 261
>PRK11906 transcriptional regulator; Provisional
Probab=91.36 E-value=4 Score=42.17 Aligned_cols=62 Identities=10% Similarity=-0.049 Sum_probs=29.7
Q ss_pred cchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 004480 221 DILFCNFVREFGKKRDLVSALRAYDASKKHLSSPN-MYICRTIIDVCGICGDYMKSRAIYEDLRS 284 (750)
Q Consensus 221 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 284 (750)
..+...+...+.-.++++.|..+|++.... .|| ..+|......+.-.|+.++|.+.+++..+
T Consensus 338 a~a~~~~g~~~~~~~~~~~a~~~f~rA~~L--~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alr 400 (458)
T PRK11906 338 GKILAIMGLITGLSGQAKVSHILFEQAKIH--STDIASLYYYRALVHFHNEKIEEARICIDKSLQ 400 (458)
T ss_pred HHHHHHHHHHHHhhcchhhHHHHHHHHhhc--CCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 344444444444455556666666655542 232 22333333334445666666666655443
No 262
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=90.82 E-value=11 Score=33.18 Aligned_cols=122 Identities=12% Similarity=0.071 Sum_probs=74.3
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCccHHHH-----HHHHHhhcCC
Q 004480 231 FGKKRDLVSALRAYDASKKHLSSP-NMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVF-----NSLMNVNAHD 304 (750)
Q Consensus 231 ~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~-----~~ll~~~~~~ 304 (750)
+++.++.++|+.-|..+.+.|... .+..--.......+.|+-..|...|++.-.....|-..-= ..++-.-.|.
T Consensus 68 lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gs 147 (221)
T COG4649 68 LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGS 147 (221)
T ss_pred HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhcccc
Confidence 455677888888888888776532 1223333344456778888888888887765444433211 1122223356
Q ss_pred hHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHHcCChHHHHHHHHHHHH
Q 004480 305 LKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKH 352 (750)
Q Consensus 305 ~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~ 352 (750)
+++.....+.+-..+.+.....-..|.-+-.+.|++..|.+.|..+..
T Consensus 148 y~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 148 YDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred HHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 666666666665555444455555666666778888888888877764
No 263
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=90.76 E-value=8.6 Score=31.93 Aligned_cols=90 Identities=20% Similarity=0.077 Sum_probs=53.0
Q ss_pred HHHHcCChHHHHHHHHHHHHhhhcCCCccCHHHHHHHHHHHHhccCHHHHHHHHHHHHHC-CCCCCH---HHHHHHHHHH
Q 004480 333 ACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSA-GVTPNT---ITWSSLINAC 408 (750)
Q Consensus 333 ~~~~~g~~~~A~~~~~~~~~~~~~g~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-g~~p~~---~~~~~li~~~ 408 (750)
++...|+++.|++.|.+...+ .+-....||.-..++--.|+.++|++=+++.++. |.. +. ..|..-...|
T Consensus 52 alaE~g~Ld~AlE~F~qal~l-----~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~-trtacqa~vQRg~ly 125 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCL-----APERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQ-TRTACQAFVQRGLLY 125 (175)
T ss_pred HHHhccchHHHHHHHHHHHHh-----cccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHH
Confidence 455667777777777766653 3345566777777777777777777666666543 222 21 1233333345
Q ss_pred HhcCCHHHHHHHHHHHHHcC
Q 004480 409 ANAGLVEQAMHLFEEMLQAG 428 (750)
Q Consensus 409 ~~~g~~~~a~~~~~~m~~~~ 428 (750)
...|+-+.|..-|+..-+.|
T Consensus 126 Rl~g~dd~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 126 RLLGNDDAARADFEAAAQLG 145 (175)
T ss_pred HHhCchHHHHHhHHHHHHhC
Confidence 56677777776666665554
No 264
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=90.71 E-value=2.3 Score=38.35 Aligned_cols=68 Identities=21% Similarity=0.095 Sum_probs=57.3
Q ss_pred hhhhHHHHHHHHhhcCChHHHHHHHHHHHHhcCChhhHHhhhhHHHHHHHHHhhhhcCchhHHHHHHHHHHhc
Q 004480 70 RNDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNEL 142 (750)
Q Consensus 70 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~ 142 (750)
....+..++..|.+.|++++|++.|.++.+....+... .+++-++|+.....+++..+...+.++...
T Consensus 35 ir~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~-----id~~l~~irv~i~~~d~~~v~~~i~ka~~~ 102 (177)
T PF10602_consen 35 IRMALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHK-----IDMCLNVIRVAIFFGDWSHVEKYIEKAESL 102 (177)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHH-----HHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 45688899999999999999999999999887666543 566667888888999999999998888764
No 265
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=90.69 E-value=3.6 Score=36.93 Aligned_cols=97 Identities=15% Similarity=0.073 Sum_probs=52.1
Q ss_pred HHHHhhcCChHHHHHHHHHHHHhcCChhhHHhhhhHHHHHHHHHhhhhcCchhHHHHHHHHHHhcCCCccccccchhhhh
Q 004480 78 ASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLELFDGSGFKL 157 (750)
Q Consensus 78 ~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~p~~~~~~~~~~~ 157 (750)
+.-+-++|++++|..-|..+++..+....-. ..-.+.+-..++.+.+.++.|+.-..++++ +.| ..-.+
T Consensus 102 GN~~F~ngdyeeA~skY~~Ale~cp~~~~e~---rsIly~Nraaa~iKl~k~e~aI~dcsKaie--l~p------ty~kA 170 (271)
T KOG4234|consen 102 GNELFKNGDYEEANSKYQEALESCPSTSTEE---RSILYSNRAAALIKLRKWESAIEDCSKAIE--LNP------TYEKA 170 (271)
T ss_pred HHHhhhcccHHHHHHHHHHHHHhCccccHHH---HHHHHhhhHHHHHHhhhHHHHHHHHHhhHh--cCc------hhHHH
Confidence 4455566777777777777766643222111 112223444455666777777766666665 333 11223
Q ss_pred hHHHHHHhhccCcHHHHHHHHHHHHhCC
Q 004480 158 LKNECQRLLDSGEVEMFVGLMEVLEEFR 185 (750)
Q Consensus 158 l~~~~~~~~~~g~~~~A~~~~~~~~~~~ 185 (750)
+.+-+..|-+...+++|++=|++++...
T Consensus 171 l~RRAeayek~ek~eealeDyKki~E~d 198 (271)
T KOG4234|consen 171 LERRAEAYEKMEKYEEALEDYKKILESD 198 (271)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHhC
Confidence 3343444444566667776666666544
No 266
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=90.57 E-value=14 Score=35.64 Aligned_cols=117 Identities=9% Similarity=0.044 Sum_probs=79.6
Q ss_pred HhhccCcHHHHHHHHHHHHhCCCCCcccccHHHHHHHHHcCCChHHHHHHhhhCCCCcc--hHH---HHHHHHHhcCCHH
Q 004480 164 RLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRADI--LFC---NFVREFGKKRDLV 238 (750)
Q Consensus 164 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~--~~~---~l~~~~~~~g~~~ 238 (750)
.+...|++.+|..+|+...... |.+......++..|...|+.+.|..++..+|.+.. .+. .-+..+.+.....
T Consensus 143 ~~~~~e~~~~a~~~~~~al~~~--~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~ 220 (304)
T COG3118 143 ELIEAEDFGEAAPLLKQALQAA--PENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATP 220 (304)
T ss_pred hhhhccchhhHHHHHHHHHHhC--cccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCC
Confidence 4455899999999999988855 77777788888999999999999999999876541 111 2234444444444
Q ss_pred HHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 004480 239 SALRAYDASKKHLSSP-NMYICRTIIDVCGICGDYMKSRAIYEDLRSQ 285 (750)
Q Consensus 239 ~A~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 285 (750)
+...+-.+... .| |...-..+...+...|+.++|.+.+-.+.++
T Consensus 221 ~~~~l~~~~aa---dPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~ 265 (304)
T COG3118 221 EIQDLQRRLAA---DPDDVEAALALADQLHLVGRNEAALEHLLALLRR 265 (304)
T ss_pred CHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 33333333333 24 5666667777788888888888777666544
No 267
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.42 E-value=8.1 Score=37.75 Aligned_cols=115 Identities=10% Similarity=0.031 Sum_probs=63.6
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-CCCccHHHHHHHHHhh----cCChHH
Q 004480 233 KKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQ-NVTLNIYVFNSLMNVN----AHDLKF 307 (750)
Q Consensus 233 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~~~~~~~~~ll~~~----~~~~~~ 307 (750)
.+|+..+|-..++++.+. .+-|..+++-.=++|...|+.+.-...++++.-. +.....++|..=|.++ +|-+++
T Consensus 115 ~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y~d 193 (491)
T KOG2610|consen 115 GRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIYDD 193 (491)
T ss_pred ccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccchh
Confidence 347777777777777764 3346667777777777788877777777766543 2222223333222221 245555
Q ss_pred HHHHHHHHHHcCCCCCHhhHHHHHHHHHHcCChHHHHHHHHH
Q 004480 308 TLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGE 349 (750)
Q Consensus 308 a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~ 349 (750)
|++.-++..+-+ +.|.-...++...+.-.|+..++.+...+
T Consensus 194 AEk~A~ralqiN-~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ 234 (491)
T KOG2610|consen 194 AEKQADRALQIN-RFDCWASHAKAHVLEMNGRHKEGKEFMYK 234 (491)
T ss_pred HHHHHHhhccCC-CcchHHHHHHHHHHHhcchhhhHHHHHHh
Confidence 555555444433 33444444555555555666666555444
No 268
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=90.40 E-value=18 Score=35.03 Aligned_cols=145 Identities=14% Similarity=0.074 Sum_probs=95.9
Q ss_pred hhhhcCchhHHHHHHHHHHhcCCCccccccchhhhhhHHHHHHhhccCcHHHHHHHHHHHHhCCCCCcccc---cHHHHH
Q 004480 122 KSIREGRIDCVVGVLKKLNELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELD---EEFRIV 198 (750)
Q Consensus 122 ~~~~~g~~~~A~~~l~~~~~~~~~p~~~~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~---~~~~l~ 198 (750)
.....|++.+|...|..++.. .|... .. .+.....+...|+.+.|..++..+....-. +... ....++
T Consensus 143 ~~~~~e~~~~a~~~~~~al~~--~~~~~---~~---~~~la~~~l~~g~~e~A~~iL~~lP~~~~~-~~~~~l~a~i~ll 213 (304)
T COG3118 143 ELIEAEDFGEAAPLLKQALQA--APENS---EA---KLLLAECLLAAGDVEAAQAILAALPLQAQD-KAAHGLQAQIELL 213 (304)
T ss_pred hhhhccchhhHHHHHHHHHHh--Ccccc---hH---HHHHHHHHHHcCChHHHHHHHHhCcccchh-hHHHHHHHHHHHH
Confidence 356899999999999999974 33221 12 222233455589999999999875532211 1111 122344
Q ss_pred HHHHcCCChHHHHHHhhhCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-CCCHHHHHHHHHHHHhcCCHHHH
Q 004480 199 QLCVNKPDVNLAIRYACIVPRADILFCNFVREFGKKRDLVSALRAYDASKKHLS-SPNMYICRTIIDVCGICGDYMKS 275 (750)
Q Consensus 199 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A 275 (750)
.-....++.....+-+..-|.+...-..+...+...|+.++|...+-.+.+... .-|...-..++..+.-.|.-+.+
T Consensus 214 ~qaa~~~~~~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g~~Dp~ 291 (304)
T COG3118 214 EQAAATPEIQDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFGPADPL 291 (304)
T ss_pred HHHhcCCCHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcCCCCHH
Confidence 445556666777777777888889999999999999999999988776665432 24555666777766666644333
No 269
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=90.36 E-value=7.5 Score=33.21 Aligned_cols=75 Identities=8% Similarity=0.043 Sum_probs=40.6
Q ss_pred HHHcCChHHHHHHHHHHHHhhhcCCCccCHHHHHHHHHHHHhccCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 004480 334 CCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACAN 410 (750)
Q Consensus 334 ~~~~g~~~~A~~~~~~~~~~~~~g~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~ 410 (750)
..+.|++++|.+.|+.+...-..| +-.......++.+|.+.+++++|...++..++..+.-.-.-|...+.+++.
T Consensus 20 ~l~~~~Y~~A~~~le~L~~ryP~g--~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~~ 94 (142)
T PF13512_consen 20 ALQKGNYEEAIKQLEALDTRYPFG--EYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLSY 94 (142)
T ss_pred HHHhCCHHHHHHHHHHHHhcCCCC--cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHHH
Confidence 345667777777776666522111 122334555666677777777777777766665433223344444444443
No 270
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=90.34 E-value=2.5 Score=38.13 Aligned_cols=63 Identities=25% Similarity=0.437 Sum_probs=50.5
Q ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 004480 222 ILFCNFVREFGKKRDLVSALRAYDASKKHLSSPN--MYICRTIIDVCGICGDYMKSRAIYEDLRS 284 (750)
Q Consensus 222 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 284 (750)
..+..+...|.+.|+.+.|++.|.++.+....+. ...+-.+|+.....+++..+.....+...
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~ 101 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAES 101 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 4677888999999999999999999887654443 45677888888889999988888777654
No 271
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=90.31 E-value=0.31 Score=30.31 Aligned_cols=28 Identities=11% Similarity=0.126 Sum_probs=23.9
Q ss_pred hHHHHHHHHhhcCChHHHHHHHHHHHHh
Q 004480 73 YYADMASKLAKDGRLEEFAMIVESVVVS 100 (750)
Q Consensus 73 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 100 (750)
+|..|+..+.+.|++++|+.++++++..
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l 28 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALAL 28 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 4678999999999999999999997755
No 272
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=89.70 E-value=27 Score=36.51 Aligned_cols=75 Identities=12% Similarity=0.129 Sum_probs=53.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-ccHHHHHHHH
Q 004480 224 FCNFVREFGKKRDLVSALRAYDASKKHLSSP-NMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVT-LNIYVFNSLM 298 (750)
Q Consensus 224 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-~~~~~~~~ll 298 (750)
-..+...+.+.|+.++|++.|.+|.+..... +..+...|+.++...+.+.++..++.+..+...+ --..+|+..+
T Consensus 262 KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti~YTaAL 338 (539)
T PF04184_consen 262 KRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSATICYTAAL 338 (539)
T ss_pred HHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHHHHHHHH
Confidence 3446667778899999999999988654332 3457888899999999999999998887543322 2345566544
No 273
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=89.66 E-value=1.3 Score=28.96 Aligned_cols=39 Identities=10% Similarity=0.045 Sum_probs=24.5
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 004480 223 LFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTI 262 (750)
Q Consensus 223 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 262 (750)
++..+...|.+.|++++|+++|+++.+..+ -|...+..+
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~~P-~~~~a~~~L 41 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALALDP-DDPEAWRAL 41 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCc-CCHHHHHHh
Confidence 456667777777777777777777776432 234444443
No 274
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=89.52 E-value=9.6 Score=33.28 Aligned_cols=37 Identities=16% Similarity=0.059 Sum_probs=24.5
Q ss_pred hhhhhHHHHHHhhccCcHHHHHHHHHHHHhCCCCCcccc
Q 004480 154 GFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELD 192 (750)
Q Consensus 154 ~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 192 (750)
.++.|+.....-...++.+++..+++.+.... |....
T Consensus 9 iv~gLie~~~~al~~~~~~D~e~lL~ALrvLR--P~~~e 45 (160)
T PF09613_consen 9 IVGGLIEVLSVALRLGDPDDAEALLDALRVLR--PEFPE 45 (160)
T ss_pred HHHHHHHHHHHHHccCChHHHHHHHHHHHHhC--CCchH
Confidence 45555665555555788889988888887744 54443
No 275
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=89.14 E-value=20 Score=33.65 Aligned_cols=199 Identities=16% Similarity=0.058 Sum_probs=92.6
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCc-cHHHHHHH-HH
Q 004480 223 LFCNFVREFGKKRDLVSALRAYDASKKH-LSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTL-NIYVFNSL-MN 299 (750)
Q Consensus 223 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~-~~~~~~~l-l~ 299 (750)
.+......+...+++..+...+...... ........+......+...+++..+...+.........+ ....+... +.
T Consensus 61 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (291)
T COG0457 61 LLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPDLAEALLALGAL 140 (291)
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcchHHHHHHHHHH
Confidence 3444555555666666666666555431 122334455555555556666666666666665543222 12222222 22
Q ss_pred hhcCChHHHHHHHHHHHHcCC--CCCHhhHHHHHHHHHHcCChHHHHHHHHHHHHhhhcCCCcc-CHHHHHHHHHHHHhc
Q 004480 300 VNAHDLKFTLEVYKNMQKLGV--MADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKL-DVFTYSTIVKVFADA 376 (750)
Q Consensus 300 ~~~~~~~~a~~~~~~m~~~g~--~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~g~~~~-~~~~~~~li~~~~~~ 376 (750)
...++++.+...+.+...... ......+......+...++.+.+...+...... ... ....+..+...+...
T Consensus 141 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~ 215 (291)
T COG0457 141 YELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKL-----NPDDDAEALLNLGLLYLKL 215 (291)
T ss_pred HHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhh-----CcccchHHHHHhhHHHHHc
Confidence 333455555555554433110 012222222333344555666666666655542 111 234455555555555
Q ss_pred cCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 004480 377 KWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQA 427 (750)
Q Consensus 377 g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 427 (750)
++++.+...+......... ....+..+...+...+..+.+...+.+....
T Consensus 216 ~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (291)
T COG0457 216 GKYEEALEYYEKALELDPD-NAEALYNLALLLLELGRYEEALEALEKALEL 265 (291)
T ss_pred ccHHHHHHHHHHHHhhCcc-cHHHHhhHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 5666666666555543211 1222333333333444455555555555443
No 276
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=89.04 E-value=9 Score=32.84 Aligned_cols=63 Identities=13% Similarity=-0.026 Sum_probs=37.4
Q ss_pred hhhhhHHHHHHhhccCcHHHHHHHHHHHHhCCCCCcccccHHHHHHHHHcCCChHHHHHHhhhCC
Q 004480 154 GFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVP 218 (750)
Q Consensus 154 ~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 218 (750)
..+.++.....-...++.+++..+++.|.-.. |.....-..-+..+...|++++|.++++.+.
T Consensus 9 iv~gLi~~~~~aL~~~d~~D~e~lLdALrvLr--P~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~ 71 (153)
T TIGR02561 9 LLGGLIEVLMYALRSADPYDAQAMLDALRVLR--PNLKELDMFDGWLLIARGNYDEAARILRELL 71 (153)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC--CCccccchhHHHHHHHcCCHHHHHHHHHhhh
Confidence 44445554444444788999999999888744 6555444444444555555555555555543
No 277
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=88.76 E-value=37 Score=36.35 Aligned_cols=393 Identities=11% Similarity=0.067 Sum_probs=211.0
Q ss_pred HHHHHHHHHHHhCCCCCcccccHHHHHHHHHcCCChHHHHHHhhh----CCCCcchHHHHHHHHH-hcCCHHHHHHHHHH
Q 004480 172 EMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACI----VPRADILFCNFVREFG-KKRDLVSALRAYDA 246 (750)
Q Consensus 172 ~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~----~~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~ 246 (750)
+.+..+++.++..- |.-.-+|......=.+.|..+.+.++|++ +|-+...|......+. ..|+.+.....|+.
T Consensus 62 ~~~r~~y~~fL~ky--Pl~~gyW~kfA~~E~klg~~~~s~~Vfergv~aip~SvdlW~~Y~~f~~n~~~d~~~lr~~fe~ 139 (577)
T KOG1258|consen 62 DALREVYDIFLSKY--PLCYGYWKKFADYEYKLGNAENSVKVFERGVQAIPLSVDLWLSYLAFLKNNNGDPETLRDLFER 139 (577)
T ss_pred HHHHHHHHHHHhhC--ccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhccCCCHHHHHHHHHH
Confidence 44555566555432 55555566666655667777777777766 4555566666444333 45677777777777
Q ss_pred HHhCC-CC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCccHHHHHHHHHhhcC-----------ChHHHHHHHH
Q 004480 247 SKKHL-SS-PNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAH-----------DLKFTLEVYK 313 (750)
Q Consensus 247 ~~~~~-~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~-----------~~~~a~~~~~ 313 (750)
....- .. .+...|...|..-..++++.....+|+..++.. ...|+.....+.+ ..+.+.++-.
T Consensus 140 A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRileiP----~~~~~~~f~~f~~~l~~~~~~~l~~~d~~~~l~~ 215 (577)
T KOG1258|consen 140 AKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEIP----LHQLNRHFDRFKQLLNQNEEKILLSIDELIQLRS 215 (577)
T ss_pred HHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhhh----hhHhHHHHHHHHHHHhcCChhhhcCHHHHHHHhh
Confidence 76532 11 345567777776677788888888888877642 1222222221111 1122211111
Q ss_pred HHHHc-CC---CCCHhhHHHHHHHHH-HcCChHHHHHHHHHHHHhhhcCCCccCHHHHHHHHHHHHhccCHHHHHHHHHH
Q 004480 314 NMQKL-GV---MADMASYNILLKACC-LAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKED 388 (750)
Q Consensus 314 ~m~~~-g~---~~~~~~~~~ll~~~~-~~g~~~~A~~~~~~~~~~~~~g~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 388 (750)
..... .+ .+.......-++--. ..+..+++..+..+.. ...-.++-......+..-.|+.
T Consensus 216 ~~~~~~~~~~~~~~~e~~~~~v~~~~~~s~~l~~~~~~l~~~~---------------~~~~~~~~~s~~~~~kr~~fE~ 280 (577)
T KOG1258|consen 216 DVAERSKITHSQEPLEELEIGVKDSTDPSKSLTEEKTILKRIV---------------SIHEKVYQKSEEEEEKRWGFEE 280 (577)
T ss_pred hHHhhhhcccccChhHHHHHHHhhccCccchhhHHHHHHHHHH---------------HHHHHHHHhhHhHHHHHHhhhh
Confidence 11110 00 000000000000000 0001111111111110 0111112222333333444444
Q ss_pred HHHCC---C----CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCChHHHHHHHHHHhh
Q 004480 389 MLSAG---V----TPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTL 461 (750)
Q Consensus 389 m~~~g---~----~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~ 461 (750)
-...- + .++..+|..-+....+.|+.+.+.-+|+...-- +..-...|--.+.-....|+.+-|..++..-.+
T Consensus 281 ~IkrpYfhvkpl~~aql~nw~~yLdf~i~~g~~~~~~~l~ercli~-cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~ 359 (577)
T KOG1258|consen 281 GIKRPYFHVKPLDQAQLKNWRYYLDFEITLGDFSRVFILFERCLIP-CALYDEFWIKYARWMESSGDVSLANNVLARACK 359 (577)
T ss_pred hccccccccCcccHHHHHHHHHHhhhhhhcccHHHHHHHHHHHHhH-HhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhh
Confidence 33321 1 234667888888888999999999888887532 111223344444444455777777766654322
Q ss_pred cccccccCCCCCCchhhhhhhhhhhcccccCCCCccCCCccccccccCCCCccHHHHHHHHHHHHhcHHHHHHHHHHHHH
Q 004480 462 SKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTDYYRVKALMNEMRT 541 (750)
Q Consensus 462 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~a~~l~~~m~~ 541 (750)
-.. .-.|......+.+.-+.++...|..+++.+..
T Consensus 360 i~~---------------------------------------------k~~~~i~L~~a~f~e~~~n~~~A~~~lq~i~~ 394 (577)
T KOG1258|consen 360 IHV---------------------------------------------KKTPIIHLLEARFEESNGNFDDAKVILQRIES 394 (577)
T ss_pred hcC---------------------------------------------CCCcHHHHHHHHHHHhhccHHHHHHHHHHHHh
Confidence 111 12677888888888888899999999999887
Q ss_pred cCCCCCHH-HHHHHHHHHHcCCCHHHHH---HHHHHHHHCCCCCCHHHHHHHHHH-----HHHcCCHHHHHHHHHHHHHC
Q 004480 542 VGLSPNHI-SWTILIDACGGSGNVEGAL---QILKIMREDGMSPDVVAYTTAIKV-----CVRSKRLKQAFSLFEEMKHY 612 (750)
Q Consensus 542 ~~~~p~~~-~~~~li~~~~~~g~~~~A~---~~~~~m~~~g~~p~~~~~~~li~~-----~~~~g~~~~A~~~~~~m~~~ 612 (750)
.- |+.. .-..-+....+.|+.+.+. .++....+. +-+..+.+.+.-- +.-.++.+.|..++.+|.+.
T Consensus 395 e~--pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~--~~~~~i~~~l~~~~~r~~~~i~~d~~~a~~~l~~~~~~ 470 (577)
T KOG1258|consen 395 EY--PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEG--KENNGILEKLYVKFARLRYKIREDADLARIILLEANDI 470 (577)
T ss_pred hC--CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhccc--ccCcchhHHHHHHHHHHHHHHhcCHHHHHHHHHHhhhc
Confidence 63 5543 2233345556788888887 333333322 1222233333322 33368899999999999875
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHH
Q 004480 613 QIQPNLVTYITLLRARSRYGSLHE 636 (750)
Q Consensus 613 g~~p~~~t~~~li~~~~~~g~~~~ 636 (750)
+.++...|..+++.+...+...+
T Consensus 471 -~~~~k~~~~~~~~~~~~~~~~~e 493 (577)
T KOG1258|consen 471 -LPDCKVLYLELIRFELIQPSGRE 493 (577)
T ss_pred -CCccHHHHHHHHHHHHhCCcchh
Confidence 56678889999998888776554
No 278
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=88.75 E-value=1 Score=27.28 Aligned_cols=32 Identities=13% Similarity=0.146 Sum_probs=27.5
Q ss_pred hhHHHHHHHHhhcCChHHHHHHHHHHHHhcCChh
Q 004480 72 DYYADMASKLAKDGRLEEFAMIVESVVVSEGNVS 105 (750)
Q Consensus 72 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~ 105 (750)
..|..++..+...|++++|+..|+++++. +|+
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~ 33 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALEL--DPD 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHH--STT
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHH--CcC
Confidence 46788999999999999999999999998 553
No 279
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=88.69 E-value=22 Score=33.71 Aligned_cols=178 Identities=11% Similarity=0.023 Sum_probs=83.9
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCC-C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCccHHHHHHHHHhhc---
Q 004480 228 VREFGKKRDLVSALRAYDASKKHLSS-P-NMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNA--- 302 (750)
Q Consensus 228 ~~~~~~~g~~~~A~~~~~~~~~~~~~-~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~--- 302 (750)
+..-.+.|++++|.+.|+.+....+- | ...+.-.++.++-+.+++++|+..+++....-..-...-|...|.+.+
T Consensus 41 g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~YlkgLs~~~ 120 (254)
T COG4105 41 GLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYLKGLSYFF 120 (254)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHhc
Confidence 33344567777777777777654321 1 233445555666677777777777777665533222222222222211
Q ss_pred ------CChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHHcCChHHHHHHHHHHHHhhhcCCCccCHHHHHHHHHHHHhc
Q 004480 303 ------HDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADA 376 (750)
Q Consensus 303 ------~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~g~~~~~~~~~~~li~~~~~~ 376 (750)
+|...+.+.|..+.+ ++.-|=...-...|......+.... ...=..+.+-|.+.
T Consensus 121 ~i~~~~rDq~~~~~A~~~f~~------------~i~ryPnS~Ya~dA~~~i~~~~d~L--------A~~Em~IaryY~kr 180 (254)
T COG4105 121 QIDDVTRDQSAARAAFAAFKE------------LVQRYPNSRYAPDAKARIVKLNDAL--------AGHEMAIARYYLKR 180 (254)
T ss_pred cCCccccCHHHHHHHHHHHHH------------HHHHCCCCcchhhHHHHHHHHHHHH--------HHHHHHHHHHHHHh
Confidence 233333333333322 1111111111111221111111100 00001234557777
Q ss_pred cCHHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004480 377 KWWQMALKVKEDMLSAGVTPN---TITWSSLINACANAGLVEQAMHLFEEMLQ 426 (750)
Q Consensus 377 g~~~~a~~~~~~m~~~g~~p~---~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 426 (750)
|.+..|..-+++|++. .+-+ ....-.|..+|.+.|-.++|...-.-+..
T Consensus 181 ~~~~AA~nR~~~v~e~-y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~ 232 (254)
T COG4105 181 GAYVAAINRFEEVLEN-YPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGA 232 (254)
T ss_pred cChHHHHHHHHHHHhc-cccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHh
Confidence 7777777777777765 2212 22344556667777777777666555544
No 280
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=88.63 E-value=17 Score=32.24 Aligned_cols=39 Identities=13% Similarity=0.271 Sum_probs=28.4
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHhCChHHHHHHH
Q 004480 418 MHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLF 456 (750)
Q Consensus 418 ~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~ 456 (750)
.++++.+.+.++.|+...+..+++.+.+.|++..-..++
T Consensus 14 lEYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~qll 52 (167)
T PF07035_consen 14 LEYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQLL 52 (167)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 345666667778888888888888888888776655544
No 281
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=88.38 E-value=20 Score=32.85 Aligned_cols=67 Identities=13% Similarity=0.047 Sum_probs=41.5
Q ss_pred CCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 004480 218 PRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQ 285 (750)
Q Consensus 218 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 285 (750)
|.-+.+||-|.-.+...|+++.|.+.|+...+.++.-+-...|.-|. +--.|++.-|.+-|.+.-+.
T Consensus 96 P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~-~YY~gR~~LAq~d~~~fYQ~ 162 (297)
T COG4785 96 PDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIA-LYYGGRYKLAQDDLLAFYQD 162 (297)
T ss_pred CCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhcccee-eeecCchHhhHHHHHHHHhc
Confidence 44456777777777777888888888887777543333333343333 23457777777666655544
No 282
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=88.14 E-value=5.9 Score=38.37 Aligned_cols=78 Identities=9% Similarity=0.176 Sum_probs=56.4
Q ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----cCCCCCHHHHHH
Q 004480 364 FTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQ-----AGCEPNSQCCNI 438 (750)
Q Consensus 364 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~-----~~~~p~~~~~~~ 438 (750)
.++..++..+...|+++.+...++++.... +-+...|..+|.+|.+.|+...|+..|+.+.+ .|+.|...+...
T Consensus 154 ~~l~~lae~~~~~~~~~~~~~~l~~Li~~d-p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~ 232 (280)
T COG3629 154 KALTKLAEALIACGRADAVIEHLERLIELD-PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRAL 232 (280)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHH
Confidence 355666777777778888888888877764 33677788888888888888888888777655 477777776665
Q ss_pred HHHH
Q 004480 439 LLQA 442 (750)
Q Consensus 439 ll~~ 442 (750)
....
T Consensus 233 y~~~ 236 (280)
T COG3629 233 YEEI 236 (280)
T ss_pred HHHH
Confidence 5554
No 283
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=88.05 E-value=1.2 Score=26.88 Aligned_cols=29 Identities=14% Similarity=0.094 Sum_probs=25.6
Q ss_pred hhHHHHHHHHhhcCChHHHHHHHHHHHHh
Q 004480 72 DYYADMASKLAKDGRLEEFAMIVESVVVS 100 (750)
Q Consensus 72 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 100 (750)
..+..++..+.+.|++++|+..|+++++.
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l 30 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALEL 30 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 46778899999999999999999999988
No 284
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=87.77 E-value=48 Score=36.52 Aligned_cols=48 Identities=13% Similarity=0.146 Sum_probs=24.0
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCChHHHHH
Q 004480 403 SLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFR 454 (750)
Q Consensus 403 ~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~ 454 (750)
--+..+...|+-.+|.++-.+.+ -||...|-.-+.+++..++|++-++
T Consensus 689 dTv~~li~~g~~k~a~ql~~~Fk----ipdKr~~wLk~~aLa~~~kweeLek 736 (829)
T KOG2280|consen 689 DTVTTLILIGQNKRAEQLKSDFK----IPDKRLWWLKLTALADIKKWEELEK 736 (829)
T ss_pred HHHHHHHHccchHHHHHHHHhcC----CcchhhHHHHHHHHHhhhhHHHHHH
Confidence 33344444555555555554443 4455555555555555555554333
No 285
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=87.76 E-value=1.9 Score=42.32 Aligned_cols=145 Identities=14% Similarity=0.000 Sum_probs=77.9
Q ss_pred HHHHHHhhcCChHHHHHHHHHHHHhcCChhhHHhhhhHHHHHHHHHhhhhcCchhHHHHHHHHHHhc--CCCccccccch
Q 004480 76 DMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNEL--GVAPLELFDGS 153 (750)
Q Consensus 76 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~--~~~p~~~~~~~ 153 (750)
.+..+....+.++.+++.|+.+...- ...-+.++-..++..+.+.|.+..++++|.-+..++.+. .+..+....-.
T Consensus 127 ~~~~Ahlgls~fq~~Lesfe~A~~~A--~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~ky 204 (518)
T KOG1941|consen 127 SMGNAHLGLSVFQKALESFEKALRYA--HNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKY 204 (518)
T ss_pred hHHHHhhhHHHHHHHHHHHHHHHHHh--hccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHH
Confidence 45667777788888888888876652 222233444566667777788888888888887776652 11111110000
Q ss_pred hhhhhHHHHHHhhccCcHHHHHHHHHHHHhCCCCCcccccHHHHHHHHHcCCChHHHHHHhhhCCCCcchHHHHHHHHHh
Q 004480 154 GFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRADILFCNFVREFGK 233 (750)
Q Consensus 154 ~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~l~~~~~~ 233 (750)
.--.+......+-..|+..+|.+.-++..+..+...+..++ ..-...+.+.|..
T Consensus 205 r~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~--------------------------arc~~~~aDIyR~ 258 (518)
T KOG1941|consen 205 RAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQ--------------------------ARCLLCFADIYRS 258 (518)
T ss_pred HHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHH--------------------------HHHHHHHHHHHHh
Confidence 00111122222333455555555554433221111010000 1234457888889
Q ss_pred cCCHHHHHHHHHHHH
Q 004480 234 KRDLVSALRAYDASK 248 (750)
Q Consensus 234 ~g~~~~A~~~~~~~~ 248 (750)
.|+.+.|+.-|+...
T Consensus 259 ~gd~e~af~rYe~Am 273 (518)
T KOG1941|consen 259 RGDLERAFRRYEQAM 273 (518)
T ss_pred cccHhHHHHHHHHHH
Confidence 999999888877654
No 286
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=87.75 E-value=8 Score=32.24 Aligned_cols=68 Identities=10% Similarity=0.036 Sum_probs=49.7
Q ss_pred CcchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 004480 220 ADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVT 288 (750)
Q Consensus 220 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 288 (750)
........++.+..+|+-+.-.+++.++.+. -.+++...-.+..+|.+.|+..++.+++.+.-+.|++
T Consensus 85 ~se~vD~ALd~lv~~~kkDqLdki~~~l~kn-~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~k 152 (161)
T PF09205_consen 85 LSEYVDLALDILVKQGKKDQLDKIYNELKKN-EEINPEFLVKIANAYKKLGNTREANELLKEACEKGLK 152 (161)
T ss_dssp --HHHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-H
T ss_pred hHHHHHHHHHHHHHhccHHHHHHHHHHHhhc-cCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhchH
Confidence 3455666778888999999999999888752 3477888888999999999999999999999998864
No 287
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=87.61 E-value=18 Score=31.69 Aligned_cols=90 Identities=16% Similarity=0.206 Sum_probs=54.4
Q ss_pred HHHHHcCChHHHHHHHHHHHHhhhcCCCccCH---HHHHHHHHHHHhccCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 004480 332 KACCLAGNTVLAQEIYGEVKHLEAKGVLKLDV---FTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINAC 408 (750)
Q Consensus 332 ~~~~~~g~~~~A~~~~~~~~~~~~~g~~~~~~---~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~ 408 (750)
..-.+.++.+++..+++.+.- +.|.. .++..++ +...|+|.+|.++|+++...+ |....-..|+..|
T Consensus 18 ~~al~~~~~~D~e~lL~ALrv------LRP~~~e~~~~~~~l--~i~r~~w~dA~rlLr~l~~~~--~~~p~~kALlA~C 87 (160)
T PF09613_consen 18 SVALRLGDPDDAEALLDALRV------LRPEFPELDLFDGWL--HIVRGDWDDALRLLRELEERA--PGFPYAKALLALC 87 (160)
T ss_pred HHHHccCChHHHHHHHHHHHH------hCCCchHHHHHHHHH--HHHhCCHHHHHHHHHHHhccC--CCChHHHHHHHHH
Confidence 344467899999999999887 34544 3444444 789999999999999987653 3333334444444
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCC
Q 004480 409 ANAGLVEQAMHLFEEMLQAGCEP 431 (750)
Q Consensus 409 ~~~g~~~~a~~~~~~m~~~~~~p 431 (750)
.....-..=...-+++.+.+-.|
T Consensus 88 L~~~~D~~Wr~~A~evle~~~d~ 110 (160)
T PF09613_consen 88 LYALGDPSWRRYADEVLESGADP 110 (160)
T ss_pred HHHcCChHHHHHHHHHHhcCCCh
Confidence 43332222222334455554333
No 288
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=87.59 E-value=1.3 Score=27.49 Aligned_cols=23 Identities=22% Similarity=0.398 Sum_probs=11.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHH
Q 004480 224 FCNFVREFGKKRDLVSALRAYDA 246 (750)
Q Consensus 224 ~~~l~~~~~~~g~~~~A~~~~~~ 246 (750)
++.|...|.+.|++++|+.+|++
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~ 24 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQ 24 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHH
Confidence 34455555555555555555554
No 289
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=87.35 E-value=38 Score=34.84 Aligned_cols=419 Identities=13% Similarity=0.131 Sum_probs=210.7
Q ss_pred CcccccHHHHHHHHHcCCChHHHHHHhhhCCC----CcchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 004480 188 VKELDEEFRIVQLCVNKPDVNLAIRYACIVPR----ADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTII 263 (750)
Q Consensus 188 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li 263 (750)
|.+...|..|++.+..++..++-.+.++++.. -+.+|..-+++=....++.....+|.+..... .+...|..-+
T Consensus 39 PtnI~S~fqLiq~~~tq~s~~~~re~yeq~~~pfp~~~~aw~ly~s~ELA~~df~svE~lf~rCL~k~--l~ldLW~lYl 116 (660)
T COG5107 39 PTNILSYFQLIQYLETQESMDAEREMYEQLSSPFPIMEHAWRLYMSGELARKDFRSVESLFGRCLKKS--LNLDLWMLYL 116 (660)
T ss_pred chhHHHHHHHHHHHhhhhhHHHHHHHHHHhcCCCccccHHHHHHhcchhhhhhHHHHHHHHHHHHhhh--ccHhHHHHHH
Confidence 88888899999999999999998888888633 33567777777667789999999999887643 4566777777
Q ss_pred HHHHhcCCH------HHHHHHHHHHHh-CCCCcc-HHHHHHHHHhhc-----C------ChHHHHHHHHHHHHcCCCC--
Q 004480 264 DVCGICGDY------MKSRAIYEDLRS-QNVTLN-IYVFNSLMNVNA-----H------DLKFTLEVYKNMQKLGVMA-- 322 (750)
Q Consensus 264 ~~~~~~g~~------~~A~~~~~~m~~-~g~~~~-~~~~~~ll~~~~-----~------~~~~a~~~~~~m~~~g~~~-- 322 (750)
+.-.+.... ....+.|+-... .++.|- ...|+....... + +.+...+.|.+|...-+..
T Consensus 117 ~YIRr~n~~~tGq~r~~i~~ayefv~~~~~~e~~s~~~W~ey~~fle~~~~~~kwEeQqrid~iR~~Y~ral~tP~~nle 196 (660)
T COG5107 117 EYIRRVNNLITGQKRFKIYEAYEFVLGCAIFEPQSENYWDEYGLFLEYIEELGKWEEQQRIDKIRNGYMRALQTPMGNLE 196 (660)
T ss_pred HHHHhhCcccccchhhhhHHHHHHHHhcccccccccchHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHcCccccHH
Confidence 644333211 112233333332 233332 234444433211 2 3444555565555421110
Q ss_pred ----CHhhHHHHHHHHH-------HcCChHHHHHHHHHHHHhhhcCCC---ccCHHHHHHH-----------HHHHHh--
Q 004480 323 ----DMASYNILLKACC-------LAGNTVLAQEIYGEVKHLEAKGVL---KLDVFTYSTI-----------VKVFAD-- 375 (750)
Q Consensus 323 ----~~~~~~~ll~~~~-------~~g~~~~A~~~~~~~~~~~~~g~~---~~~~~~~~~l-----------i~~~~~-- 375 (750)
|-..|..=++-.. ..--+-.|...++++..+. +|.- +.+..+++-. |+-=..
T Consensus 197 klW~dy~~fE~e~N~~TarKfvge~sp~ym~ar~~yqe~~nlt-~Gl~v~~~~~~Rt~nK~~r~s~S~WlNwIkwE~en~ 275 (660)
T COG5107 197 KLWKDYENFELELNKITARKFVGETSPIYMSARQRYQEIQNLT-RGLSVKNPINLRTANKAARTSDSNWLNWIKWEMENG 275 (660)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHh-ccccccCchhhhhhccccccccchhhhHhhHhhcCC
Confidence 0011111111110 0011334445555544321 2210 1112222221 110000
Q ss_pred ---ccC-H-HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH-HHHHhCCh
Q 004480 376 ---AKW-W-QMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQ-ACVEACQF 449 (750)
Q Consensus 376 ---~g~-~-~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~-~~~~~g~~ 449 (750)
.|+ . ...--++++.... +.-....|-.--..+...++-+.|+.....-.. ..|+ ....+. .|.-.++-
T Consensus 276 l~L~~~~~~qRi~y~~~q~~~y-~~~~~evw~dys~Y~~~isd~q~al~tv~rg~~--~sps---L~~~lse~yel~nd~ 349 (660)
T COG5107 276 LKLGGRPHEQRIHYIHNQILDY-FYYAEEVWFDYSEYLIGISDKQKALKTVERGIE--MSPS---LTMFLSEYYELVNDE 349 (660)
T ss_pred cccCCCcHHHHHHHHHHHHHHH-hhhhHHHHHHHHHHHhhccHHHHHHHHHHhccc--CCCc---hheeHHHHHhhcccH
Confidence 000 0 0011111111111 111122222222333445566666665544322 1333 222222 33344455
Q ss_pred HHHHHHHHHHhhcccccccCCCCCCchhhhhhhhhhhcccccCCCCccCCCccccccccCCCCccHHHHHHHHHHHHh--
Q 004480 450 DRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCT-- 527 (750)
Q Consensus 450 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~-- 527 (750)
+.....|++....-. ...............+- ..+...+.......-...|...|++-.+
T Consensus 350 e~v~~~fdk~~q~L~---------------r~ys~~~s~~~s~~D~N---~e~~~Ell~kr~~k~t~v~C~~~N~v~r~~ 411 (660)
T COG5107 350 EAVYGCFDKCTQDLK---------------RKYSMGESESASKVDNN---FEYSKELLLKRINKLTFVFCVHLNYVLRKR 411 (660)
T ss_pred HHHhhhHHHHHHHHH---------------HHHhhhhhhhhccccCC---ccccHHHHHHHHhhhhhHHHHHHHHHHHHh
Confidence 555555554432100 00000000000000000 0000000000011223445555655443
Q ss_pred cHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHH-HHHHHHHHHcCCHHHHHHH
Q 004480 528 DYYRVKALMNEMRTVG-LSPNHISWTILIDACGGSGNVEGALQILKIMREDGMSPDVVAY-TTAIKVCVRSKRLKQAFSL 605 (750)
Q Consensus 528 ~~~~a~~l~~~m~~~~-~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~-~~li~~~~~~g~~~~A~~~ 605 (750)
-.+.|..+|-+..+.| +.+++.+++++|..++ .|+...|..+|+.=... .||...| +-.+.-+.+.++-+.|..+
T Consensus 412 Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~--f~d~~~y~~kyl~fLi~inde~naraL 488 (660)
T COG5107 412 GLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLK--FPDSTLYKEKYLLFLIRINDEENARAL 488 (660)
T ss_pred hHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHh--CCCchHHHHHHHHHHHHhCcHHHHHHH
Confidence 4688999999999998 5788999999999776 57888999999875543 4565444 5666777888999999999
Q ss_pred HHHHHHCCCCCC--HHHHHHHHHHHHhcCCHHHH
Q 004480 606 FEEMKHYQIQPN--LVTYITLLRARSRYGSLHEV 637 (750)
Q Consensus 606 ~~~m~~~g~~p~--~~t~~~li~~~~~~g~~~~~ 637 (750)
|+..+.+ +.-+ ..+|..+|.-=+..|++..+
T Consensus 489 Fetsv~r-~~~~q~k~iy~kmi~YEs~~G~lN~v 521 (660)
T COG5107 489 FETSVER-LEKTQLKRIYDKMIEYESMVGSLNNV 521 (660)
T ss_pred HHHhHHH-HHHhhhhHHHHHHHHHHHhhcchHHH
Confidence 9966542 3333 67899999998899988664
No 290
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=87.11 E-value=52 Score=36.21 Aligned_cols=174 Identities=14% Similarity=0.099 Sum_probs=100.2
Q ss_pred HHHHHHHHHHHHhCCCCCcccccHHHHHHH-----HHcCCChHHHHHHhhhCC---------CCcchHHHHHHHHHhcC-
Q 004480 171 VEMFVGLMEVLEEFRLPVKELDEEFRIVQL-----CVNKPDVNLAIRYACIVP---------RADILFCNFVREFGKKR- 235 (750)
Q Consensus 171 ~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~-----~~~~~~~~~A~~~~~~~~---------~~~~~~~~l~~~~~~~g- 235 (750)
...|.++++...+.+.. .....++.. .....+++.|..+++..- ....+.+.+..+|.+..
T Consensus 228 ~~~a~~~~~~~a~~g~~----~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~~~~a~~~lg~~Y~~g~~ 303 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLGHS----EAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKGLPPAQYGLGRLYLQGLG 303 (552)
T ss_pred hhHHHHHHHHHHhhcch----HHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhcCCccccHHHHHHhcCCC
Confidence 46788888887776522 222233332 234567888888776641 23345566777776643
Q ss_pred ----CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHhCCCCccHHHHHHHHHh----hcCChH
Q 004480 236 ----DLVSALRAYDASKKHLSSPNMYICRTIIDVCGI-CGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNV----NAHDLK 306 (750)
Q Consensus 236 ----~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~-~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~----~~~~~~ 306 (750)
+.+.|..+|....+.|. |+....-..+..... ..+...|.++|...-..|..+ ...+.+++.. ...+.+
T Consensus 304 ~~~~d~~~A~~~~~~aA~~g~-~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~~~-A~~~la~~y~~G~gv~r~~~ 381 (552)
T KOG1550|consen 304 VEKIDYEKALKLYTKAAELGN-PDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGHIL-AIYRLALCYELGLGVERNLE 381 (552)
T ss_pred CccccHHHHHHHHHHHHhcCC-chHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCChH-HHHHHHHHHHhCCCcCCCHH
Confidence 56778888888877654 444433333322222 246778888888888877432 3333333322 224778
Q ss_pred HHHHHHHHHHHcCCCCCHhhHHHHHHHHHHcCChHHHHHHHHHHHH
Q 004480 307 FTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKH 352 (750)
Q Consensus 307 ~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~ 352 (750)
.|...+.+..+.| .|-..--...+..+.. ++++.+.-.+..+.+
T Consensus 382 ~A~~~~k~aA~~g-~~~A~~~~~~~~~~g~-~~~~~~~~~~~~~a~ 425 (552)
T KOG1550|consen 382 LAFAYYKKAAEKG-NPSAAYLLGAFYEYGV-GRYDTALALYLYLAE 425 (552)
T ss_pred HHHHHHHHHHHcc-ChhhHHHHHHHHHHcc-ccccHHHHHHHHHHH
Confidence 8888888888877 3332222223333333 666666666666655
No 291
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=87.02 E-value=13 Score=31.89 Aligned_cols=84 Identities=11% Similarity=0.114 Sum_probs=51.2
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCC-----CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHcCCCCCHHHHH
Q 004480 586 YTTAIKVCVRSKRLKQAFSLFEEMKHYQ-----IQPNLVTYITLLRARSRYGSLHEVQQCLAVYQDMWKAGYKANDTYLK 660 (750)
Q Consensus 586 ~~~li~~~~~~g~~~~A~~~~~~m~~~g-----~~p~~~t~~~li~~~~~~g~~~~~~~a~~~~~~m~~~g~~p~~~~~~ 660 (750)
.|+++.-....++..-..++++.+.... -.-+..+|.+++.+.++...-+. -++.+|+-|.+.+.+++...|.
T Consensus 42 iN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~--~~~~Lf~~Lk~~~~~~t~~dy~ 119 (145)
T PF13762_consen 42 INCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKL--TSLTLFNFLKKNDIEFTPSDYS 119 (145)
T ss_pred HHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHH--HHHHHHHHHHHcCCCCCHHHHH
Confidence 4555555555555555555555553110 02355667788887755543222 2566777777777788888888
Q ss_pred HHHHHHHhhhh
Q 004480 661 ELIEEWCEGVI 671 (750)
Q Consensus 661 ~li~~~~~~~~ 671 (750)
.+|++..+|..
T Consensus 120 ~li~~~l~g~~ 130 (145)
T PF13762_consen 120 CLIKAALRGYF 130 (145)
T ss_pred HHHHHHHcCCC
Confidence 88887777633
No 292
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=87.00 E-value=0.44 Score=29.16 Aligned_cols=24 Identities=17% Similarity=0.284 Sum_probs=12.0
Q ss_pred CCCcchHHHHHHHHHhcCCHHHHH
Q 004480 218 PRADILFCNFVREFGKKRDLVSAL 241 (750)
Q Consensus 218 ~~~~~~~~~l~~~~~~~g~~~~A~ 241 (750)
|.+..+|+.+...|...|++++|+
T Consensus 10 P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 10 PNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred CCCHHHHHHHHHHHHHCcCHHhhc
Confidence 344445555555555555555543
No 293
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=86.10 E-value=63 Score=36.12 Aligned_cols=218 Identities=12% Similarity=0.161 Sum_probs=96.1
Q ss_pred ccccHHHHHHHHHcCCChHHHHHHh----hhCCCCcchHHHHHHHHHhcCC-------HHHHHHHHHHHHhCCCCCCHH-
Q 004480 190 ELDEEFRIVQLCVNKPDVNLAIRYA----CIVPRADILFCNFVREFGKKRD-------LVSALRAYDASKKHLSSPNMY- 257 (750)
Q Consensus 190 ~~~~~~~l~~~~~~~~~~~~A~~~~----~~~~~~~~~~~~l~~~~~~~g~-------~~~A~~~~~~~~~~~~~~~~~- 257 (750)
+......++-.|.+.|++++|.++. ..+......+...+..|....+ -+.....|++..+.....|+.
T Consensus 110 ~~~p~Wa~Iyy~LR~G~~~~A~~~~~~~~~~~~~~~~~f~~~l~~~~~s~~~~l~~~~~~~l~~ey~~~~r~~~~~DpyK 189 (613)
T PF04097_consen 110 NGDPIWALIYYCLRCGDYDEALEVANENRNQFQKIERSFPTYLKAYASSPDRRLPPELRDKLKLEYNQRIRNSTDGDPYK 189 (613)
T ss_dssp TTEEHHHHHHHHHTTT-HHHHHHHHHHTGGGS-TTTTHHHHHHHHCTTTTSS---TCCCHHHHHHHHHHTTT-TTS-HHH
T ss_pred CCCccHHHHHHHHhcCCHHHHHHHHHHhhhhhcchhHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhcCCCCCChHH
Confidence 3445667888999999999999998 5566666777777887776532 234555566655543322432
Q ss_pred --HHHHHHHHHHhcCCHHHHH-HHHHHHHhCCCCccHHHHHHHHHhhcC-----------ChHHHHHHHHHHHHcCCCCC
Q 004480 258 --ICRTIIDVCGICGDYMKSR-AIYEDLRSQNVTLNIYVFNSLMNVNAH-----------DLKFTLEVYKNMQKLGVMAD 323 (750)
Q Consensus 258 --~~~~li~~~~~~g~~~~A~-~~~~~m~~~g~~~~~~~~~~ll~~~~~-----------~~~~a~~~~~~m~~~g~~~~ 323 (750)
+|..+. ++.-...-. .+.. .-+.+.|--|.-.... .+++......+.-+.-+.+
T Consensus 190 ~AvY~ilg----~cD~~~~~~~~V~~-------tiED~LW~~L~~vr~~~~~~~~~~e~~~L~~LQ~~i~~~Ge~~F~~- 257 (613)
T PF04097_consen 190 RAVYKILG----RCDLSRRHLPEVAR-------TIEDWLWLQLSLVREDERSSSSAYERYTLEDLQKLILKYGESHFNA- 257 (613)
T ss_dssp HHHHHHHH----T--CCC-S-TTC---------SHHHHHHHHHHH---TTSSSSSSS----HHHHHHHHHHH-GGGCTT-
T ss_pred HHHHHHHh----cCCccccchHHHhC-------cHHHHHHHHHHhhccCCCccccccccccHHHHHHHHHHhchhhccc-
Confidence 333332 221100000 1110 1112233333322111 1112222222222222333
Q ss_pred HhhHHHHHHHHHHcCChHHHHHHHHHHHHhhhcCCCccCHHHHHHHHHHHHhccCHHHHHHHHHHHHHCCC-CCCHHHHH
Q 004480 324 MASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGV-TPNTITWS 402 (750)
Q Consensus 324 ~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~g~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~-~p~~~~~~ 402 (750)
....-.....+.-.|+++.|.+.+-.... ...|.+.+...+.-|.-.+ .....-..+..... .|...-+.
T Consensus 258 ~~~p~~Yf~~LlLtgqFE~AI~~L~~~~~------~~~dAVH~AIaL~~~gLL~---~~~~~~~~lls~~~~~~~~ln~a 328 (613)
T PF04097_consen 258 GSNPLLYFQVLLLTGQFEAAIEFLYRNEF------NRVDAVHFAIALAYYGLLR---VSDSSSAPLLSVDPGDPPPLNFA 328 (613)
T ss_dssp ------HHHHHHHTT-HHHHHHHHHT--T-------HHHHHHHHHHHHHTT---------------------------HH
T ss_pred chhHHHHHHHHHHHhhHHHHHHHHHhhcc------CcccHHHHHHHHHHcCCCC---CCCccccceeeecCCCCCCcCHH
Confidence 11222345566778999999998876222 3455555555554433222 11111133332211 11225678
Q ss_pred HHHHHHHh---cCCHHHHHHHHHHHHHcC
Q 004480 403 SLINACAN---AGLVEQAMHLFEEMLQAG 428 (750)
Q Consensus 403 ~li~~~~~---~g~~~~a~~~~~~m~~~~ 428 (750)
.||..|.+ ..+..+|.++|--+....
T Consensus 329 rLI~~Y~~~F~~td~~~Al~Y~~li~~~~ 357 (613)
T PF04097_consen 329 RLIGQYTRSFEITDPREALQYLYLICLFK 357 (613)
T ss_dssp HHHHHHHHTTTTT-HHHHHHHHHGGGGS-
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHHcC
Confidence 88888876 467888998888776543
No 294
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=84.88 E-value=5.8 Score=41.92 Aligned_cols=153 Identities=10% Similarity=0.034 Sum_probs=93.1
Q ss_pred HHhhcCChHHHHHHHHHHHHhcCChhhHHhhhhHHHHHHHHHhhhhcCchhHHHHHHHHHHhcCCCccccccchhhhhhH
Q 004480 80 KLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLELFDGSGFKLLK 159 (750)
Q Consensus 80 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~p~~~~~~~~~~~l~ 159 (750)
.+.-+|+++.|...+....+. .. ..++.-+-++|-.++|+++ ...|+. -+...+
T Consensus 595 t~vmrrd~~~a~~vLp~I~k~--~r------------t~va~Fle~~g~~e~AL~~-------s~D~d~-----rFelal 648 (794)
T KOG0276|consen 595 TLVLRRDLEVADGVLPTIPKE--IR------------TKVAHFLESQGMKEQALEL-------STDPDQ-----RFELAL 648 (794)
T ss_pred HHhhhccccccccccccCchh--hh------------hhHHhHhhhccchHhhhhc-------CCChhh-----hhhhhh
Confidence 455578888777655444321 11 1122224456666655544 233332 344444
Q ss_pred HHHHHhhccCcHHHHHHHHHHHHhCCCCCcccccHHHHHHHHHcCCChHHHHHHhhhCCCCcchHHHHHHHHHhcCCHHH
Q 004480 160 NECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRADILFCNFVREFGKKRDLVS 239 (750)
Q Consensus 160 ~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 239 (750)
+ .|+.+.|.++..+ .++..-|..|+.+....+++..|.+.|....+ |..|+-.+...|+-+.
T Consensus 649 ~-------lgrl~iA~~la~e-------~~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d----~~~LlLl~t~~g~~~~ 710 (794)
T KOG0276|consen 649 K-------LGRLDIAFDLAVE-------ANSEVKWRQLGDAALSAGELPLASECFLRARD----LGSLLLLYTSSGNAEG 710 (794)
T ss_pred h-------cCcHHHHHHHHHh-------hcchHHHHHHHHHHhhcccchhHHHHHHhhcc----hhhhhhhhhhcCChhH
Confidence 4 6888888887654 33445588888888889999988888876543 6666677777777776
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 004480 240 ALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDL 282 (750)
Q Consensus 240 A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 282 (750)
...+-....+.|. .|.-.-+|...|+++++.+++.+-
T Consensus 711 l~~la~~~~~~g~------~N~AF~~~~l~g~~~~C~~lLi~t 747 (794)
T KOG0276|consen 711 LAVLASLAKKQGK------NNLAFLAYFLSGDYEECLELLIST 747 (794)
T ss_pred HHHHHHHHHhhcc------cchHHHHHHHcCCHHHHHHHHHhc
Confidence 6666555555443 222333456678888888877643
No 295
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=84.84 E-value=36 Score=32.28 Aligned_cols=55 Identities=18% Similarity=0.212 Sum_probs=43.7
Q ss_pred hcCChHHHHHHHHHHHHhcCChhhHHhhhhHHHHHHHHHhhhhcCchhHHHHHHHHHHh
Q 004480 83 KDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNE 141 (750)
Q Consensus 83 ~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~ 141 (750)
+....++|+.-|++.++..+.-..|. ..++-.+|....+.|++++..+.|.+++.
T Consensus 39 ~e~~p~~Al~sF~kVlelEgEKgeWG----FKALKQmiKI~f~l~~~~eMm~~Y~qlLT 93 (440)
T KOG1464|consen 39 KEDEPKEALSSFQKVLELEGEKGEWG----FKALKQMIKINFRLGNYKEMMERYKQLLT 93 (440)
T ss_pred cccCHHHHHHHHHHHHhcccccchhH----HHHHHHHHHHHhccccHHHHHHHHHHHHH
Confidence 45688999999999999865555453 45667788889999999999998888764
No 296
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=84.42 E-value=5.1 Score=38.71 Aligned_cols=107 Identities=12% Similarity=0.070 Sum_probs=71.4
Q ss_pred CCCCCHhhHHHHHHHHHHcCChHHHHHHHHHHHHhhhcCCCccCHHHHHHHHHHHHhccCHHHHHHHHHHHHHCCCCCCH
Q 004480 319 GVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNT 398 (750)
Q Consensus 319 g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~g~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~ 398 (750)
|.+....+...++..-....+++.+...+-.+++..... ..++... .+.++ ++..-+.++++.++..=+..|+-||.
T Consensus 59 g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~-~~~~~~~-~~~ir-lllky~pq~~i~~l~npIqYGiF~dq 135 (418)
T KOG4570|consen 59 GLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAW-YLRNWTI-HTWIR-LLLKYDPQKAIYTLVNPIQYGIFPDQ 135 (418)
T ss_pred CCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchh-hhccccH-HHHHH-HHHccChHHHHHHHhCcchhccccch
Confidence 445555666666666666677788777776665421111 1122111 22222 22334566888888888888999999
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 004480 399 ITWSSLINACANAGLVEQAMHLFEEMLQAG 428 (750)
Q Consensus 399 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 428 (750)
++++.+|+.+.+.+++.+|.++.-.|....
T Consensus 136 f~~c~l~D~flk~~n~~~aa~vvt~~~~qe 165 (418)
T KOG4570|consen 136 FTFCLLMDSFLKKENYKDAASVVTEVMMQE 165 (418)
T ss_pred hhHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 999999999999999999999888887654
No 297
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=84.14 E-value=24 Score=29.60 Aligned_cols=63 Identities=14% Similarity=0.113 Sum_probs=31.8
Q ss_pred HHHHHHHHHhccCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 004480 366 YSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGC 429 (750)
Q Consensus 366 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~ 429 (750)
....+..+...|+-+.-.+++..+.+. -.++....-.+..+|.+.|+..++.+++.+..+.|+
T Consensus 89 vD~ALd~lv~~~kkDqLdki~~~l~kn-~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~ 151 (161)
T PF09205_consen 89 VDLALDILVKQGKKDQLDKIYNELKKN-EEINPEFLVKIANAYKKLGNTREANELLKEACEKGL 151 (161)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHhhc-cCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhch
Confidence 344455555566666666666655532 244555555566666666666666666666665553
No 298
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=83.32 E-value=2.4 Score=27.07 Aligned_cols=30 Identities=20% Similarity=0.281 Sum_probs=26.1
Q ss_pred hhhHHHHHHHHhhcCChHHHHHHHHHHHHh
Q 004480 71 NDYYADMASKLAKDGRLEEFAMIVESVVVS 100 (750)
Q Consensus 71 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 100 (750)
..++..++..+...|++++|+.++++++..
T Consensus 2 a~~~~~la~~~~~~g~~~~A~~~~~~al~~ 31 (42)
T PF13374_consen 2 ASALNNLANAYRAQGRYEEALELLEEALEI 31 (42)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence 457889999999999999999999999876
No 299
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=82.78 E-value=1.1e+02 Score=36.07 Aligned_cols=114 Identities=13% Similarity=0.140 Sum_probs=76.1
Q ss_pred CCCHhhHH----HHHHHHHHcCChHHHHHHHHHHHHhhhcCCCccCHHHHHHHHHHHHhccCHHHHHHHHHHHHHCCCCC
Q 004480 321 MADMASYN----ILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTP 396 (750)
Q Consensus 321 ~~~~~~~~----~ll~~~~~~g~~~~A~~~~~~~~~~~~~g~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p 396 (750)
.|+...+. +..+-+.....+++|.-.|+..-+. .--+.+|..+|+|.+|+.+-.++... .
T Consensus 932 ~~~~e~~k~i~~~ya~hL~~~~~~~~Aal~Ye~~Gkl-------------ekAl~a~~~~~dWr~~l~~a~ql~~~---~ 995 (1265)
T KOG1920|consen 932 KPDSEKQKVIYEAYADHLREELMSDEAALMYERCGKL-------------EKALKAYKECGDWREALSLAAQLSEG---K 995 (1265)
T ss_pred ccCHHHHHHHHHHHHHHHHHhccccHHHHHHHHhccH-------------HHHHHHHHHhccHHHHHHHHHhhcCC---H
Confidence 45544444 4444455667788887777765432 23466788899999999999887532 1
Q ss_pred CHH--HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCChHHHHHHHHH
Q 004480 397 NTI--TWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRS 458 (750)
Q Consensus 397 ~~~--~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~ 458 (750)
|.. +-..|+.-+...++.-+|-++..+.... ..-.+..|++...|++|.++-..
T Consensus 996 de~~~~a~~L~s~L~e~~kh~eAa~il~e~~sd--------~~~av~ll~ka~~~~eAlrva~~ 1051 (1265)
T KOG1920|consen 996 DELVILAEELVSRLVEQRKHYEAAKILLEYLSD--------PEEAVALLCKAKEWEEALRVASK 1051 (1265)
T ss_pred HHHHHHHHHHHHHHHHcccchhHHHHHHHHhcC--------HHHHHHHHhhHhHHHHHHHHHHh
Confidence 222 2356788888899998888888877543 23345566777788888877654
No 300
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=82.52 E-value=3.6 Score=24.82 Aligned_cols=27 Identities=11% Similarity=0.174 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 004480 585 AYTTAIKVCVRSKRLKQAFSLFEEMKH 611 (750)
Q Consensus 585 ~~~~li~~~~~~g~~~~A~~~~~~m~~ 611 (750)
+|..+...|...|++++|+..|++.++
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALE 29 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHH
Confidence 445555555555555555555555544
No 301
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=82.39 E-value=31 Score=29.69 Aligned_cols=50 Identities=12% Similarity=0.214 Sum_probs=37.6
Q ss_pred HcCChHHHHHHHHHHHHhhhcCCCccC---HHHHHHHHHHHHhccCHHHHHHHHHHHHHCC
Q 004480 336 LAGNTVLAQEIYGEVKHLEAKGVLKLD---VFTYSTIVKVFADAKWWQMALKVKEDMLSAG 393 (750)
Q Consensus 336 ~~g~~~~A~~~~~~~~~~~~~g~~~~~---~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g 393 (750)
..++.+++..+++.+.- +.|+ ..++...+ +...|+|++|.++|+++.+.+
T Consensus 22 ~~~d~~D~e~lLdALrv------LrP~~~e~d~~dg~l--~i~rg~w~eA~rvlr~l~~~~ 74 (153)
T TIGR02561 22 RSADPYDAQAMLDALRV------LRPNLKELDMFDGWL--LIARGNYDEAARILRELLSSA 74 (153)
T ss_pred hcCCHHHHHHHHHHHHH------hCCCccccchhHHHH--HHHcCCHHHHHHHHHhhhccC
Confidence 47888999999988876 3444 34455444 778899999999999988764
No 302
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=81.33 E-value=16 Score=28.73 Aligned_cols=86 Identities=10% Similarity=-0.051 Sum_probs=51.4
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCccHHHHHHHHHhhcCChHHHHHHHHHH
Q 004480 236 DLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKFTLEVYKNM 315 (750)
Q Consensus 236 ~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~a~~~~~~m 315 (750)
..++|..+-+.+...+-. ...+--+-+..+...|+|++|..+.+.+ ..||...|-++-....|-.+....-+.+|
T Consensus 20 cHqEA~tIAdwL~~~~~~-~E~v~lIRlsSLmNrG~Yq~Al~l~~~~----~~pdlepw~ALce~rlGl~s~l~~rl~rl 94 (115)
T TIGR02508 20 CHQEANTIADWLHLKGES-EEAVQLIRLSSLMNRGDYQSALQLGNKL----CYPDLEPWLALCEWRLGLGSALESRLNRL 94 (115)
T ss_pred HHHHHHHHHHHHhcCCch-HHHHHHHHHHHHHccchHHHHHHhcCCC----CCchHHHHHHHHHHhhccHHHHHHHHHHH
Confidence 345555555555443211 1111112223466788888888877665 47888888888887777777777777777
Q ss_pred HHcCCCCCHhhH
Q 004480 316 QKLGVMADMASY 327 (750)
Q Consensus 316 ~~~g~~~~~~~~ 327 (750)
...| .|....|
T Consensus 95 a~sg-~p~lq~F 105 (115)
T TIGR02508 95 AASG-DPRLQTF 105 (115)
T ss_pred HhCC-CHHHHHH
Confidence 7666 3433333
No 303
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=81.14 E-value=11 Score=33.93 Aligned_cols=58 Identities=21% Similarity=0.197 Sum_probs=29.4
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 004480 227 FVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQN 286 (750)
Q Consensus 227 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 286 (750)
|.......|.+++|+..++.....+. .......-.+++...|+-++|+.-|.+....+
T Consensus 132 LArvq~q~~k~D~AL~~L~t~~~~~w--~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 132 LARVQLQQKKADAALKTLDTIKEESW--AAIVAELRGDILLAKGDKQEARAAYEKALESD 189 (207)
T ss_pred HHHHHHHhhhHHHHHHHHhccccccH--HHHHHHHhhhHHHHcCchHHHHHHHHHHHHcc
Confidence 44455555666666666655443211 11122333445556666666666666655553
No 304
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=80.25 E-value=2.6 Score=25.06 Aligned_cols=29 Identities=14% Similarity=0.039 Sum_probs=25.2
Q ss_pred hHHHHHHHHhhcCChHHHHHHHHHHHHhc
Q 004480 73 YYADMASKLAKDGRLEEFAMIVESVVVSE 101 (750)
Q Consensus 73 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 101 (750)
++..++..+.+.|++++|...|+.+++..
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~ 30 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKRY 30 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHC
Confidence 45577888999999999999999999883
No 305
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=79.83 E-value=50 Score=35.41 Aligned_cols=82 Identities=16% Similarity=0.126 Sum_probs=47.4
Q ss_pred CHhhHHHHHHHHHHcCChHHHHHHHHHHHHhhhcCCCccCHHHHHHHHHHHHhccCHHHHHHHHHHHHHCCCCCCHHHHH
Q 004480 323 DMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWS 402 (750)
Q Consensus 323 ~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~g~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~ 402 (750)
+..-|..|.++....+++..|.+.|..... |..|+-.+...|+.+....+-....+.|.. |
T Consensus 665 s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d-------------~~~LlLl~t~~g~~~~l~~la~~~~~~g~~-N----- 725 (794)
T KOG0276|consen 665 SEVKWRQLGDAALSAGELPLASECFLRARD-------------LGSLLLLYTSSGNAEGLAVLASLAKKQGKN-N----- 725 (794)
T ss_pred chHHHHHHHHHHhhcccchhHHHHHHhhcc-------------hhhhhhhhhhcCChhHHHHHHHHHHhhccc-c-----
Confidence 455577777777777777777777765443 344555556666655555554444444421 2
Q ss_pred HHHHHHHhcCCHHHHHHHHHH
Q 004480 403 SLINACANAGLVEQAMHLFEE 423 (750)
Q Consensus 403 ~li~~~~~~g~~~~a~~~~~~ 423 (750)
.-.-+|...|+++++.+++.+
T Consensus 726 ~AF~~~~l~g~~~~C~~lLi~ 746 (794)
T KOG0276|consen 726 LAFLAYFLSGDYEECLELLIS 746 (794)
T ss_pred hHHHHHHHcCCHHHHHHHHHh
Confidence 222344556777777666644
No 306
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=79.49 E-value=49 Score=30.04 Aligned_cols=95 Identities=18% Similarity=0.087 Sum_probs=64.9
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHhhhcCCCccCHHHHHHHHHHHHhccCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 004480 330 LLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACA 409 (750)
Q Consensus 330 ll~~~~~~g~~~~A~~~~~~~~~~~~~g~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~ 409 (750)
+...+...+++++|..-++.......+. ......-..|.+.....|.+++|+..++.....+. .......-.+.+.
T Consensus 95 lAk~~ve~~~~d~A~aqL~~~l~~t~De--~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w--~~~~~elrGDill 170 (207)
T COG2976 95 LAKAEVEANNLDKAEAQLKQALAQTKDE--NLKALAALRLARVQLQQKKADAALKTLDTIKEESW--AAIVAELRGDILL 170 (207)
T ss_pred HHHHHHhhccHHHHHHHHHHHHccchhH--HHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccH--HHHHHHHhhhHHH
Confidence 3456778899999998888776411010 01122334456677888999999999888766543 2333455567888
Q ss_pred hcCCHHHHHHHHHHHHHcC
Q 004480 410 NAGLVEQAMHLFEEMLQAG 428 (750)
Q Consensus 410 ~~g~~~~a~~~~~~m~~~~ 428 (750)
..|+-++|..-|.+..+.+
T Consensus 171 ~kg~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 171 AKGDKQEARAAYEKALESD 189 (207)
T ss_pred HcCchHHHHHHHHHHHHcc
Confidence 8999999999999888775
No 307
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=79.23 E-value=1.1e+02 Score=34.16 Aligned_cols=184 Identities=11% Similarity=0.026 Sum_probs=96.4
Q ss_pred CcchhhhHHHHHHHHh-hcCChHHHHHHHHHHHHhcCChhhHHhhhhHHHHHHHHHhhhhcCchhHHHHHHHHHHhcCCC
Q 004480 67 LSSRNDYYADMASKLA-KDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVA 145 (750)
Q Consensus 67 p~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~ 145 (750)
|.-....+..++..|. .-.++++|+..+++.+...-+++....-.... .-++..+.+.+... |...+++.++.--.
T Consensus 55 p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~--~ll~~i~~~~~~~~-a~~~l~~~I~~~~~ 131 (608)
T PF10345_consen 55 PRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQ--FLLARIYFKTNPKA-ALKNLDKAIEDSET 131 (608)
T ss_pred HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHH--HHHHHHHHhcCHHH-HHHHHHHHHHHHhc
Confidence 3335667777888777 45889999999999887765533332212211 12344454555554 99998887764111
Q ss_pred ccccccchhhhhhHHHHHHhhccCcHHHHHHHHHHHHhCCCCCcccccHHHHHHHHHcCCChHHHHHHhhhCCCCcchHH
Q 004480 146 PLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRADILFC 225 (750)
Q Consensus 146 p~~~~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~ 225 (750)
.........+..+ +....+. .+++..|++.++.+........+.. ..++.
T Consensus 132 ~~~~~w~~~frll-~~~l~~~-~~d~~~Al~~L~~~~~~a~~~~d~~----------------------------~~v~~ 181 (608)
T PF10345_consen 132 YGHSAWYYAFRLL-KIQLALQ-HKDYNAALENLQSIAQLANQRGDPA----------------------------VFVLA 181 (608)
T ss_pred cCchhHHHHHHHH-HHHHHHh-cccHHHHHHHHHHHHHHhhhcCCHH----------------------------HHHHH
Confidence 0011111222222 2111111 2677788888777654332111110 02222
Q ss_pred HHHHH--HHhcCCHHHHHHHHHHHHhCC---------CCCCHHHHHHHHHHH--HhcCCHHHHHHHHHHHH
Q 004480 226 NFVRE--FGKKRDLVSALRAYDASKKHL---------SSPNMYICRTIIDVC--GICGDYMKSRAIYEDLR 283 (750)
Q Consensus 226 ~l~~~--~~~~g~~~~A~~~~~~~~~~~---------~~~~~~~~~~li~~~--~~~g~~~~A~~~~~~m~ 283 (750)
.++.+ ..+.+..+++.+..+++.... ..|...+|..+++.+ ...|+++.+...++++.
T Consensus 182 ~l~~~~l~l~~~~~~d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq 252 (608)
T PF10345_consen 182 SLSEALLHLRRGSPDDVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQ 252 (608)
T ss_pred HHHHHHHHhcCCCchhHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 22222 224455566666666553211 124567788887754 45577777777766654
No 308
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=78.81 E-value=92 Score=32.86 Aligned_cols=75 Identities=15% Similarity=0.089 Sum_probs=47.9
Q ss_pred HHHHHHHHHhccCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHH
Q 004480 366 YSTIVKVFADAKWWQMALKVKEDMLSAGVT-PNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEP-NSQCCNILL 440 (750)
Q Consensus 366 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~-p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p-~~~~~~~ll 440 (750)
-..+..++-+.|+.++|++.+++|.+.... -+......|+.++...+.+.++..++.+-.+...+. -...|+..+
T Consensus 262 KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti~YTaAL 338 (539)
T PF04184_consen 262 KRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSATICYTAAL 338 (539)
T ss_pred HHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHHHHHHHH
Confidence 344556666778888888888888765322 133456678888888888888888888765433222 223455544
No 309
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=78.65 E-value=1.3e+02 Score=34.33 Aligned_cols=266 Identities=11% Similarity=0.036 Sum_probs=141.5
Q ss_pred CcccccHHHHHHHHHcCCChHHHHHHhhhCCCCcchHHHHHHH---HHhcCCHHHHHHHHHHHHhCCC--CCCHHHHHHH
Q 004480 188 VKELDEEFRIVQLCVNKPDVNLAIRYACIVPRADILFCNFVRE---FGKKRDLVSALRAYDASKKHLS--SPNMYICRTI 262 (750)
Q Consensus 188 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~l~~~---~~~~g~~~~A~~~~~~~~~~~~--~~~~~~~~~l 262 (750)
+.....+......+...|.+++|+.+.-.+.+...+-..+-+. +...+++.--+.+.+.+...-. .|-.....+
T Consensus 344 ~~~~~lH~~Aa~w~~~~g~~~eAI~hAlaA~d~~~aa~lle~~~~~L~~~~~lsll~~~~~~lP~~~l~~~P~Lvll~a- 422 (894)
T COG2909 344 ARLKELHRAAAEWFAEHGLPSEAIDHALAAGDPEMAADLLEQLEWQLFNGSELSLLLAWLKALPAELLASTPRLVLLQA- 422 (894)
T ss_pred CchhHHHHHHHHHHHhCCChHHHHHHHHhCCCHHHHHHHHHhhhhhhhcccchHHHHHHHHhCCHHHHhhCchHHHHHH-
Confidence 3334556666777888888888888765554432222221111 2333444444433333211000 011111111
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCccH-------HHHHH---HHHhhcCChHHHHHHHHHHHHc----CCCCCHhhHH
Q 004480 263 IDVCGICGDYMKSRAIYEDLRSQNVTLNI-------YVFNS---LMNVNAHDLKFTLEVYKNMQKL----GVMADMASYN 328 (750)
Q Consensus 263 i~~~~~~g~~~~A~~~~~~m~~~g~~~~~-------~~~~~---ll~~~~~~~~~a~~~~~~m~~~----g~~~~~~~~~ 328 (750)
-......++++|..+..++...-..|+. ..|+. .+..+.++++.+.++-+..... -..+....+.
T Consensus 423 -W~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~s 501 (894)
T COG2909 423 -WLLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALS 501 (894)
T ss_pred -HHHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhh
Confidence 1234468899999998887654222221 13333 3334668888888777766543 2334566777
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHhhhcCCCccCHHHH---HHH--HHHHHhccC--HHHHHHHHHHHHHCC---C---C
Q 004480 329 ILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTY---STI--VKVFADAKW--WQMALKVKEDMLSAG---V---T 395 (750)
Q Consensus 329 ~ll~~~~~~g~~~~A~~~~~~~~~~~~~g~~~~~~~~~---~~l--i~~~~~~g~--~~~a~~~~~~m~~~g---~---~ 395 (750)
.+..+..-.|++++|..+..+..++... .+...+ ..+ ...+...|. +.+.+..|....... . .
T Consensus 502 v~~~a~~~~G~~~~Al~~~~~a~~~a~~----~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~ 577 (894)
T COG2909 502 VLGEAAHIRGELTQALALMQQAEQMARQ----HDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHE 577 (894)
T ss_pred hhhHHHHHhchHHHHHHHHHHHHHHHHH----cccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccch
Confidence 7788888899999999998887775322 233332 222 223556663 334444444433221 0 1
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCCCHH----HHHHHHHHHHHhCChHHHHHHHHHHhhc
Q 004480 396 PNTITWSSLINACANAGLVEQAMHLFEEMLQAG--CEPNSQ----CCNILLQACVEACQFDRAFRLFRSWTLS 462 (750)
Q Consensus 396 p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~--~~p~~~----~~~~ll~~~~~~g~~~~A~~~~~~~~~~ 462 (750)
+-..++..+..++.+ .+.+..-...-.+.| ..|... .+..|...+...|+.++|...++++...
T Consensus 578 f~~~~r~~ll~~~~r---~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l 647 (894)
T COG2909 578 FLVRIRAQLLRAWLR---LDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERL 647 (894)
T ss_pred hHHHHHHHHHHHHHH---HhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 223455556666555 343333332222221 122221 2235677788899999999999988764
No 310
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=78.44 E-value=5.7 Score=25.19 Aligned_cols=27 Identities=22% Similarity=0.247 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 004480 584 VAYTTAIKVCVRSKRLKQAFSLFEEMK 610 (750)
Q Consensus 584 ~~~~~li~~~~~~g~~~~A~~~~~~m~ 610 (750)
.+++.|...|...|++++|.+++++..
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al 29 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEAL 29 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHH
Confidence 466777777777777777777777665
No 311
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=77.70 E-value=21 Score=34.69 Aligned_cols=101 Identities=14% Similarity=0.098 Sum_probs=60.7
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC---CCccHHHHHHHHHhhc-CChHHHHHHHHHHHHcCCCCCHhh
Q 004480 251 LSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQN---VTLNIYVFNSLMNVNA-HDLKFTLEVYKNMQKLGVMADMAS 326 (750)
Q Consensus 251 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g---~~~~~~~~~~ll~~~~-~~~~~a~~~~~~m~~~g~~~~~~~ 326 (750)
|......+...++..-....+++.+...+-.++... ..|+. +-.++++.+- -+.+.++.++..=+..|+-||..+
T Consensus 59 g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~-~~~~~irlllky~pq~~i~~l~npIqYGiF~dqf~ 137 (418)
T KOG4570|consen 59 GLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNW-TIHTWIRLLLKYDPQKAIYTLVNPIQYGIFPDQFT 137 (418)
T ss_pred CCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccc-cHHHHHHHHHccChHHHHHHHhCcchhccccchhh
Confidence 333444555556655555677788877777766431 11221 1122223222 255667777777777777778888
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHH
Q 004480 327 YNILLKACCLAGNTVLAQEIYGEVKH 352 (750)
Q Consensus 327 ~~~ll~~~~~~g~~~~A~~~~~~~~~ 352 (750)
++.+|+.+.+.+++.+|.++.-.|..
T Consensus 138 ~c~l~D~flk~~n~~~aa~vvt~~~~ 163 (418)
T KOG4570|consen 138 FCLLMDSFLKKENYKDAASVVTEVMM 163 (418)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 87788888777777777776655543
No 312
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=77.64 E-value=6.4 Score=23.55 Aligned_cols=26 Identities=12% Similarity=0.119 Sum_probs=13.4
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH
Q 004480 586 YTTAIKVCVRSKRLKQAFSLFEEMKH 611 (750)
Q Consensus 586 ~~~li~~~~~~g~~~~A~~~~~~m~~ 611 (750)
|..+...|.+.|++++|.+.|++..+
T Consensus 4 ~~~lg~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF07719_consen 4 WYYLGQAYYQLGNYEEAIEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 44444555555555555555555543
No 313
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=77.53 E-value=29 Score=27.42 Aligned_cols=61 Identities=18% Similarity=0.297 Sum_probs=38.9
Q ss_pred HHHHHhccCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHH
Q 004480 370 VKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCN 437 (750)
Q Consensus 370 i~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~ 437 (750)
+..+...|+|++|..+.+.+ +.||...|-+|-. .+.|..+++..-+.+|..+| .|....|.
T Consensus 46 lsSLmNrG~Yq~Al~l~~~~----~~pdlepw~ALce--~rlGl~s~l~~rl~rla~sg-~p~lq~Fa 106 (115)
T TIGR02508 46 LSSLMNRGDYQSALQLGNKL----CYPDLEPWLALCE--WRLGLGSALESRLNRLAASG-DPRLQTFV 106 (115)
T ss_pred HHHHHccchHHHHHHhcCCC----CCchHHHHHHHHH--HhhccHHHHHHHHHHHHhCC-CHHHHHHH
Confidence 34566777787777776655 3677777766643 46676777776777776666 45444443
No 314
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=77.13 E-value=90 Score=31.86 Aligned_cols=66 Identities=15% Similarity=0.114 Sum_probs=51.4
Q ss_pred CCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 004480 546 PNHISWTILIDACGGSGNVEGALQILKIMREDGMSP---DVVAYTTAIKVCVRSKRLKQAFSLFEEMKH 611 (750)
Q Consensus 546 p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 611 (750)
....+|..+...+.+.|+++.|...+.++...+... +....-.-.+.+...|+..+|+..+++...
T Consensus 144 ~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 144 ELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred HHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 345678888999999999999999999998743222 344455556778889999999999988876
No 315
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=76.66 E-value=3.4 Score=23.27 Aligned_cols=23 Identities=17% Similarity=0.200 Sum_probs=19.9
Q ss_pred hHHHHHHHHhhcCChHHHHHHHH
Q 004480 73 YYADMASKLAKDGRLEEFAMIVE 95 (750)
Q Consensus 73 ~~~~l~~~~~~~g~~~~A~~~~~ 95 (750)
....++..+...|++++|+.+++
T Consensus 3 a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 3 ARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHh
Confidence 45678899999999999999876
No 316
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=76.08 E-value=69 Score=30.00 Aligned_cols=22 Identities=23% Similarity=0.394 Sum_probs=14.4
Q ss_pred HHhcCCHHHHHHHHHHHHhCCC
Q 004480 266 CGICGDYMKSRAIYEDLRSQNV 287 (750)
Q Consensus 266 ~~~~g~~~~A~~~~~~m~~~g~ 287 (750)
-...+++.+|+++|++.....+
T Consensus 164 aa~leqY~~Ai~iyeqva~~s~ 185 (288)
T KOG1586|consen 164 AAQLEQYSKAIDIYEQVARSSL 185 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHHhc
Confidence 3455777777777777765543
No 317
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=75.92 E-value=21 Score=32.51 Aligned_cols=19 Identities=5% Similarity=0.233 Sum_probs=7.2
Q ss_pred CHHHHHHHHHHHHhccCHH
Q 004480 362 DVFTYSTIVKVFADAKWWQ 380 (750)
Q Consensus 362 ~~~~~~~li~~~~~~g~~~ 380 (750)
|+..+..|+..+-+.|+++
T Consensus 177 n~eil~sLas~~~~~~~~e 195 (203)
T PF11207_consen 177 NPEILKSLASIYQKLKNYE 195 (203)
T ss_pred CHHHHHHHHHHHHHhcchh
Confidence 3333333333333333333
No 318
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=75.45 E-value=5.4 Score=23.97 Aligned_cols=29 Identities=17% Similarity=0.187 Sum_probs=26.2
Q ss_pred hhHHHHHHHHhhcCChHHHHHHHHHHHHh
Q 004480 72 DYYADMASKLAKDGRLEEFAMIVESVVVS 100 (750)
Q Consensus 72 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 100 (750)
..|..++..+.+.|++++|...|++.++.
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~ 30 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALEL 30 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 35778899999999999999999999887
No 319
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=75.16 E-value=17 Score=33.34 Aligned_cols=76 Identities=14% Similarity=0.114 Sum_probs=54.4
Q ss_pred HHHHHHHhhcCChHHHHHHHHHHHHhcCChhhHHhhhhHHHHHHHHHhhhhcCchhHHHHHHHHHHhcCCCccccccchh
Q 004480 75 ADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLELFDGSG 154 (750)
Q Consensus 75 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~p~~~~~~~~ 154 (750)
...++.+.+.+++.+|+.+.++-++. +|....-.+. ++..+|-.|+|++|..-++-.-+ +.|+......+
T Consensus 5 ~~t~seLL~~~sL~dai~~a~~qVka--kPtda~~Rhf------lfqLlcvaGdw~kAl~Ql~l~a~--l~p~~t~~a~l 74 (273)
T COG4455 5 RDTISELLDDNSLQDAIGLARDQVKA--KPTDAGGRHF------LFQLLCVAGDWEKALAQLNLAAT--LSPQDTVGASL 74 (273)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHhc--CCccccchhH------HHHHHhhcchHHHHHHHHHHHhh--cCcccchHHHH
Confidence 34577889999999999999998888 6654433333 34448899999999998887776 66765544455
Q ss_pred hhhhHH
Q 004480 155 FKLLKN 160 (750)
Q Consensus 155 ~~~l~~ 160 (750)
|..++.
T Consensus 75 yr~lir 80 (273)
T COG4455 75 YRHLIR 80 (273)
T ss_pred HHHHHH
Confidence 555443
No 320
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=74.64 E-value=34 Score=27.22 Aligned_cols=34 Identities=18% Similarity=0.171 Sum_probs=14.3
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH
Q 004480 602 AFSLFEEMKHYQIQPNLVTYITLLRARSRYGSLH 635 (750)
Q Consensus 602 A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~ 635 (750)
..+-+..+....+.|++.+..+.+++|.|..++.
T Consensus 29 ~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a 62 (108)
T PF02284_consen 29 LRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFA 62 (108)
T ss_dssp HHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HH
T ss_pred HHHHHHHHhccccCCChHHHHHHHHHHHHhhhHH
Confidence 3344444444445555555555555555544443
No 321
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=74.55 E-value=25 Score=27.61 Aligned_cols=45 Identities=18% Similarity=0.279 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 004480 566 GALQILKIMREDGMSPDVVAYTTAIKVCVRSKRLKQAFSLFEEMK 610 (750)
Q Consensus 566 ~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 610 (750)
++.+-++.+....+.|++....+.+++|-+.+++.-|.++|+-.+
T Consensus 25 e~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK 69 (103)
T cd00923 25 ELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIK 69 (103)
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 344444444444445555555555555555555555555554443
No 322
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=74.50 E-value=56 Score=28.17 Aligned_cols=97 Identities=16% Similarity=0.142 Sum_probs=43.7
Q ss_pred HHHHcCCCCCH--hhHHHHHHHHHHcCChHHHHHHHHHHHHhhhcCCC-ccCHHHHHHHHHHHHhccC-HHHHHHHHHHH
Q 004480 314 NMQKLGVMADM--ASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVL-KLDVFTYSTIVKVFADAKW-WQMALKVKEDM 389 (750)
Q Consensus 314 ~m~~~g~~~~~--~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~g~~-~~~~~~~~~li~~~~~~g~-~~~a~~~~~~m 389 (750)
.|.+.+..++. ...|.++.-....+.......+++.+..+...... ..+...|..++.+.++..- ---+..+|..|
T Consensus 27 y~~~~~~~~~~k~~fiN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~L 106 (145)
T PF13762_consen 27 YMQEENASQSTKTIFINCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFL 106 (145)
T ss_pred HhhhcccChhHHHHHHHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHH
Confidence 33444444443 23555666656666666666666655432110000 1233344555554444333 22344444444
Q ss_pred HHCCCCCCHHHHHHHHHHHHh
Q 004480 390 LSAGVTPNTITWSSLINACAN 410 (750)
Q Consensus 390 ~~~g~~p~~~~~~~li~~~~~ 410 (750)
.+.+.+++..-|..+|.++.+
T Consensus 107 k~~~~~~t~~dy~~li~~~l~ 127 (145)
T PF13762_consen 107 KKNDIEFTPSDYSCLIKAALR 127 (145)
T ss_pred HHcCCCCCHHHHHHHHHHHHc
Confidence 444444444555555544433
No 323
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=74.18 E-value=33 Score=31.11 Aligned_cols=94 Identities=14% Similarity=0.136 Sum_probs=64.3
Q ss_pred HHHHcCChHHHHHHHHHHHHhhhcCCCccCHHHHHHHHHHHHhccCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 004480 333 ACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAG 412 (750)
Q Consensus 333 ~~~~~g~~~~A~~~~~~~~~~~~~g~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g 412 (750)
-+.+.|++++|..-|.....+...-.-..-.+.|..-..++.+.+.++.|+.-..+.++.+.. .......-..+|.+..
T Consensus 104 ~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pt-y~kAl~RRAeayek~e 182 (271)
T KOG4234|consen 104 ELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPT-YEKALERRAEAYEKME 182 (271)
T ss_pred HhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCch-hHHHHHHHHHHHHhhh
Confidence 456789999999988888774211100111345666677888999999999888888876432 2222333345778888
Q ss_pred CHHHHHHHHHHHHHc
Q 004480 413 LVEQAMHLFEEMLQA 427 (750)
Q Consensus 413 ~~~~a~~~~~~m~~~ 427 (750)
.+++|+.-|.++.+.
T Consensus 183 k~eealeDyKki~E~ 197 (271)
T KOG4234|consen 183 KYEEALEDYKKILES 197 (271)
T ss_pred hHHHHHHHHHHHHHh
Confidence 899999999998876
No 324
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=73.96 E-value=1.2e+02 Score=31.93 Aligned_cols=178 Identities=12% Similarity=0.095 Sum_probs=116.5
Q ss_pred CcccccHHHHHHHHHcCCChHHHHHHhhhC---CCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 004480 188 VKELDEEFRIVQLCVNKPDVNLAIRYACIV---PRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIID 264 (750)
Q Consensus 188 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~ 264 (750)
|-+....-.++..+.........+.+..++ ..+-.++..++..|... ..+.-..+|+++.+..+ -|++.-..|..
T Consensus 63 ~l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~e~kmal~el~q~y~en-~n~~l~~lWer~ve~df-nDvv~~ReLa~ 140 (711)
T COG1747 63 LLDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYGESKMALLELLQCYKEN-GNEQLYSLWERLVEYDF-NDVVIGRELAD 140 (711)
T ss_pred cccchHHHHHHHHhccchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcc-hhHHHHHHHHH
Confidence 444444555555555444444444444332 44557888899999888 66888889998887544 45555556666
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCC--cc---HHHHHHHHHhhcCChHHHHHHHHHHHHc-CCCCCHhhHHHHHHHHHHcC
Q 004480 265 VCGICGDYMKSRAIYEDLRSQNVT--LN---IYVFNSLMNVNAHDLKFTLEVYKNMQKL-GVMADMASYNILLKACCLAG 338 (750)
Q Consensus 265 ~~~~~g~~~~A~~~~~~m~~~g~~--~~---~~~~~~ll~~~~~~~~~a~~~~~~m~~~-g~~~~~~~~~~ll~~~~~~g 338 (750)
.|.+ ++...+...|.....+=++ .+ ...|.-+......+.+..+.+...+... |...-...+..+-.-|....
T Consensus 141 ~yEk-ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~i~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys~~e 219 (711)
T COG1747 141 KYEK-IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPELIGDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYSENE 219 (711)
T ss_pred HHHH-hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHhccccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhcccc
Confidence 5655 8888888888887755332 11 2356677766667888888888877654 44444566667778888889
Q ss_pred ChHHHHHHHHHHHHhhhcCCCccCHHHHHHHHHHH
Q 004480 339 NTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVF 373 (750)
Q Consensus 339 ~~~~A~~~~~~~~~~~~~g~~~~~~~~~~~li~~~ 373 (750)
++++|.+++..+.+.. ..|...-..++..+
T Consensus 220 N~~eai~Ilk~il~~d-----~k~~~ar~~~i~~l 249 (711)
T COG1747 220 NWTEAIRILKHILEHD-----EKDVWARKEIIENL 249 (711)
T ss_pred CHHHHHHHHHHHhhhc-----chhhhHHHHHHHHH
Confidence 9999999999777632 23444444555444
No 325
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=73.53 E-value=92 Score=30.26 Aligned_cols=28 Identities=7% Similarity=-0.066 Sum_probs=18.5
Q ss_pred cccccHHHHHHHHHcCCChHHHHHHhhh
Q 004480 189 KELDEEFRIVQLCVNKPDVNLAIRYACI 216 (750)
Q Consensus 189 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 216 (750)
-++..+..++..+.+.+++.+|+++|-.
T Consensus 88 Gdp~LH~~~a~~~~~e~~~~~A~~Hfl~ 115 (260)
T PF04190_consen 88 GDPELHHLLAEKLWKEGNYYEAERHFLL 115 (260)
T ss_dssp --HHHHHHHHHHHHHTT-HHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHhhccHHHHHHHHHh
Confidence 4556677778888888888888777643
No 326
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=72.97 E-value=1.6e+02 Score=32.91 Aligned_cols=49 Identities=16% Similarity=0.049 Sum_probs=31.7
Q ss_pred hcCCHHHHHHHHHHHHHcCC-CCC-----HHHHHHHHHH--HHHhCChHHHHHHHHH
Q 004480 410 NAGLVEQAMHLFEEMLQAGC-EPN-----SQCCNILLQA--CVEACQFDRAFRLFRS 458 (750)
Q Consensus 410 ~~g~~~~a~~~~~~m~~~~~-~p~-----~~~~~~ll~~--~~~~g~~~~A~~~~~~ 458 (750)
-.+++..|...+.+|.+..- .|+ ...+...+.| +...|+.+.|...|.+
T Consensus 373 ~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~~ 429 (608)
T PF10345_consen 373 IRGDWSKATQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQK 429 (608)
T ss_pred HCcCHHHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHhh
Confidence 46889999999998886421 111 2223333332 3456999999999973
No 327
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=72.92 E-value=2 Score=37.29 Aligned_cols=87 Identities=11% Similarity=0.174 Sum_probs=62.0
Q ss_pred HHHHHHHhccCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhC
Q 004480 368 TIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEAC 447 (750)
Q Consensus 368 ~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g 447 (750)
.++..+.+.+..+....+++.+...+...+....+.++..|++.+..+...++++. .+..-...++..|.+.|
T Consensus 12 ~vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~-------~~~yd~~~~~~~c~~~~ 84 (143)
T PF00637_consen 12 EVISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKT-------SNNYDLDKALRLCEKHG 84 (143)
T ss_dssp CCHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTS-------SSSS-CTHHHHHHHTTT
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHccc-------ccccCHHHHHHHHHhcc
Confidence 34566677778888888888888766566788889999999998877777777762 12234456777888888
Q ss_pred ChHHHHHHHHHHhh
Q 004480 448 QFDRAFRLFRSWTL 461 (750)
Q Consensus 448 ~~~~A~~~~~~~~~ 461 (750)
.+++|.-++.++..
T Consensus 85 l~~~a~~Ly~~~~~ 98 (143)
T PF00637_consen 85 LYEEAVYLYSKLGN 98 (143)
T ss_dssp SHHHHHHHHHCCTT
T ss_pred hHHHHHHHHHHccc
Confidence 88888888876543
No 328
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=72.44 E-value=38 Score=26.92 Aligned_cols=46 Identities=17% Similarity=0.181 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHcCCCCCHhhHHHHHHHHHHcCChHHHHHHHHHHHH
Q 004480 307 FTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKH 352 (750)
Q Consensus 307 ~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~ 352 (750)
+..+-++.+....+.|++....+.+++|.+.+++..|.++|+.++.
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~ 73 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKD 73 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 3445555556667788999999999999999999999999998876
No 329
>PRK09687 putative lyase; Provisional
Probab=72.36 E-value=1e+02 Score=30.32 Aligned_cols=124 Identities=8% Similarity=-0.032 Sum_probs=58.7
Q ss_pred CCCHhhHHHHHHHHHHcCChHHHHHHHHHHHHhhhcCCCccCHHHHHHHHHHHHhccCH----HHHHHHHHHHHHCCCCC
Q 004480 321 MADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWW----QMALKVKEDMLSAGVTP 396 (750)
Q Consensus 321 ~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~g~~~~~~~~~~~li~~~~~~g~~----~~a~~~~~~m~~~g~~p 396 (750)
.+|.......+.++...|..+- ...+..+.. .+|...-...+.+++..|+. +++...+..+... .+
T Consensus 34 d~d~~vR~~A~~aL~~~~~~~~-~~~l~~ll~-------~~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~--D~ 103 (280)
T PRK09687 34 DHNSLKRISSIRVLQLRGGQDV-FRLAIELCS-------SKNPIERDIGADILSQLGMAKRCQDNVFNILNNLALE--DK 103 (280)
T ss_pred CCCHHHHHHHHHHHHhcCcchH-HHHHHHHHh-------CCCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhc--CC
Confidence 3555555566666666664332 222222221 24555555556666666652 4566666655333 34
Q ss_pred CHHHHHHHHHHHHhcCCH-----HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCChHHHHHHHHH
Q 004480 397 NTITWSSLINACANAGLV-----EQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRS 458 (750)
Q Consensus 397 ~~~~~~~li~~~~~~g~~-----~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~ 458 (750)
+...-...+.++...+.. ..+...+..... .++..+-...+.++.+.++. ++...+-.
T Consensus 104 d~~VR~~A~~aLG~~~~~~~~~~~~a~~~l~~~~~---D~~~~VR~~a~~aLg~~~~~-~ai~~L~~ 166 (280)
T PRK09687 104 SACVRASAINATGHRCKKNPLYSPKIVEQSQITAF---DKSTNVRFAVAFALSVINDE-AAIPLLIN 166 (280)
T ss_pred CHHHHHHHHHHHhcccccccccchHHHHHHHHHhh---CCCHHHHHHHHHHHhccCCH-HHHHHHHH
Confidence 555554555555444321 122333322222 33445555556666655553 34444433
No 330
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=71.98 E-value=1.6e+02 Score=32.43 Aligned_cols=50 Identities=18% Similarity=0.154 Sum_probs=26.3
Q ss_pred cHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCC
Q 004480 528 DYYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQILKIMREDGM 579 (750)
Q Consensus 528 ~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 579 (750)
+...|...++...+.| .|...--...+..+.. ++.+.+...+..+.+.|.
T Consensus 379 ~~~~A~~~~k~aA~~g-~~~A~~~~~~~~~~g~-~~~~~~~~~~~~~a~~g~ 428 (552)
T KOG1550|consen 379 NLELAFAYYKKAAEKG-NPSAAYLLGAFYEYGV-GRYDTALALYLYLAELGY 428 (552)
T ss_pred CHHHHHHHHHHHHHcc-ChhhHHHHHHHHHHcc-ccccHHHHHHHHHHHhhh
Confidence 4566777777777766 2222222222333333 666666666666655443
No 331
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=71.78 E-value=45 Score=33.65 Aligned_cols=120 Identities=17% Similarity=0.142 Sum_probs=81.1
Q ss_pred hccccCCcchhhhHHHHHHHHhhcCChHHHHHHHHHHHHhcC-ChhhHHhhhhHHHHHHHHHhhhhcCchhHHHHHHHHH
Q 004480 61 STVRRDLSSRNDYYADMASKLAKDGRLEEFAMIVESVVVSEG-NVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKL 139 (750)
Q Consensus 61 ~~l~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~ 139 (750)
++++.+|++ ......++....+....++....+++++...+ .+.-|...+..... -...-.+++...+|.+.
T Consensus 56 rAL~~np~~-~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~~~~~~LW~~yL~~~q~------~~~~f~v~~~~~~y~~~ 128 (321)
T PF08424_consen 56 RALKHNPDS-ERLLLGYLEEGEKVWDSEKLAKKWEELLFKNPGSPELWREYLDFRQS------NFASFTVSDVRDVYEKC 128 (321)
T ss_pred HHHHhCCCC-HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHH------HhccCcHHHHHHHHHHH
Confidence 447778877 88888888999999999999999999998832 34444433332111 22334455666666655
Q ss_pred Hhc------CC----CccccccchhhhhhHHHHHHhhccCcHHHHHHHHHHHHhCCCC
Q 004480 140 NEL------GV----APLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLP 187 (750)
Q Consensus 140 ~~~------~~----~p~~~~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~ 187 (750)
++. +. .+-.......+.++++.|.-+.++|..+.|+.++..+++.++.
T Consensus 129 l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~~aG~~E~Ava~~Qa~lE~n~~ 186 (321)
T PF08424_consen 129 LRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLRQAGYTERAVALWQALLEFNFF 186 (321)
T ss_pred HHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHCCchHHHHHHHHHHHHHHcC
Confidence 443 11 1111234456777888888888899999999999999987764
No 332
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=70.68 E-value=50 Score=25.99 Aligned_cols=61 Identities=13% Similarity=0.169 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 004480 601 QAFSLFEEMKHYQIQPNLVTYITLLRARSRYGSLHEVQQCLAVYQDMWKAGYKANDTYLKELIEE 665 (750)
Q Consensus 601 ~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~ 665 (750)
++.+-++.+....+.|++....+.+++|.|..++.- |+.+++-... .+..+...|..+++.
T Consensus 25 e~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~al---AVR~lE~vK~-K~~~~~~~y~~~lqe 85 (103)
T cd00923 25 ELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFAL---AVRILEAIKD-KCGAHKEIYPYILQE 85 (103)
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHH---HHHHHHHHHH-HccCchhhHHHHHHH
Confidence 444445555555555666666666666555555443 3444443331 111133345555544
No 333
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=70.65 E-value=87 Score=28.72 Aligned_cols=107 Identities=10% Similarity=0.045 Sum_probs=71.7
Q ss_pred HHHHhcHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHH
Q 004480 523 KACCTDYYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQILKIMREDGMSPDVVAYTTAIKVCVRSKRLKQA 602 (750)
Q Consensus 523 ~~~~~~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A 602 (750)
.++....++-.++.++.... .|+.. +..-+.+.|+ +.|.+.|-.+...+.--++...-.|..-|. ..+.+++
T Consensus 88 ~a~~~s~~~l~~L~~~tk~S---~dP~l---lYy~Wsr~~d-~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt 159 (203)
T PF11207_consen 88 RALLHSYQELERLQEETKNS---QDPYL---LYYHWSRFGD-QEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKT 159 (203)
T ss_pred HHHHHHHHHHHHHHHHHccC---CCccH---HHHHhhccCc-HHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHH
Confidence 34443444555555555443 23322 1234566676 788888888888765556666666655555 6788999
Q ss_pred HHHHHHHHH---CCCCCCHHHHHHHHHHHHhcCCHHHH
Q 004480 603 FSLFEEMKH---YQIQPNLVTYITLLRARSRYGSLHEV 637 (750)
Q Consensus 603 ~~~~~~m~~---~g~~p~~~t~~~li~~~~~~g~~~~~ 637 (750)
..++-+..+ .+-.+|+..+.+|...+.+.|+.+.|
T Consensus 160 ~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~A 197 (203)
T PF11207_consen 160 IQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQA 197 (203)
T ss_pred HHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhh
Confidence 999998874 33478899999999999999987763
No 334
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=70.46 E-value=91 Score=28.85 Aligned_cols=224 Identities=14% Similarity=0.067 Sum_probs=148.2
Q ss_pred cCCHHHHHHHHHHHHhCCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-CCCccHHHHHHHHH--hhcCChHHHH
Q 004480 234 KRDLVSALRAYDASKKHLSS-PNMYICRTIIDVCGICGDYMKSRAIYEDLRSQ-NVTLNIYVFNSLMN--VNAHDLKFTL 309 (750)
Q Consensus 234 ~g~~~~A~~~~~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~~~~~~~~~ll~--~~~~~~~~a~ 309 (750)
.+....+...+......... .....+......+...+++..+...+...... ........+..... ...+++..+.
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (291)
T COG0457 36 LGELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEAL 115 (291)
T ss_pred HhhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHH
Confidence 35566666666666653322 13567777888888999999999998887753 11222233322222 2335778888
Q ss_pred HHHHHHHHcCCCCCHhhHHHHHH-HHHHcCChHHHHHHHHHHHHhhhcCCCccCHHHHHHHHHHHHhccCHHHHHHHHHH
Q 004480 310 EVYKNMQKLGVMADMASYNILLK-ACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKED 388 (750)
Q Consensus 310 ~~~~~m~~~g~~~~~~~~~~ll~-~~~~~g~~~~A~~~~~~~~~~~~~g~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 388 (750)
..+.........+ ......... .+...|+++.|...+....... .........+......+...++.+.+...+..
T Consensus 116 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 192 (291)
T COG0457 116 ELLEKALALDPDP-DLAEALLALGALYELGDYEEALELYEKALELD--PELNELAEALLALGALLEALGRYEEALELLEK 192 (291)
T ss_pred HHHHHHHcCCCCc-chHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCccchHHHHHHhhhHHHHhcCHHHHHHHHHH
Confidence 8888887754333 122222333 7889999999999999985410 00012333444445557788999999999999
Q ss_pred HHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHHhCChHHHHHHHHHHhhc
Q 004480 389 MLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPN-SQCCNILLQACVEACQFDRAFRLFRSWTLS 462 (750)
Q Consensus 389 m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~ 462 (750)
............+..+...+...++++.+...+....... |+ ...+..+...+...+..+.+...+......
T Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (291)
T COG0457 193 ALKLNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELD--PDNAEALYNLALLLLELGRYEEALEALEKALEL 265 (291)
T ss_pred HHhhCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhC--cccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 9876322146778888889999999999999999998763 33 444555555555677789998888876654
No 335
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=70.44 E-value=1.3e+02 Score=30.67 Aligned_cols=66 Identities=12% Similarity=0.109 Sum_probs=49.7
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHHHHhCChHHHHHHHHHHhh
Q 004480 396 PNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEP---NSQCCNILLQACVEACQFDRAFRLFRSWTL 461 (750)
Q Consensus 396 p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p---~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~ 461 (750)
....+|..+...+.+.|.++.|...+..+.+.+... +....-.-....-..|+..+|...++....
T Consensus 144 ~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 144 ELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred HHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 356678899999999999999999999988754211 333444445566678999999999888776
No 336
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=69.99 E-value=1.8e+02 Score=32.19 Aligned_cols=77 Identities=17% Similarity=0.181 Sum_probs=32.1
Q ss_pred HHHHHHHHHcCCCCCHhhHHHHHHHHHHcCChHHHHHHHHHHHHhhhcCCCccCHHHHHHHHHHHHhccCHHHHHHHHHH
Q 004480 309 LEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKED 388 (750)
Q Consensus 309 ~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~g~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 388 (750)
....+.+..+-...+......++..|.+.|-.+.|.++.+.+-.. .....-|..-+..+.++|+...+..+-+.
T Consensus 390 ~~~i~~lL~~~p~~t~~~~~k~l~iC~~~~L~~~a~~I~~~~~~~------~~~~~~~g~AL~~~~ra~d~~~v~~i~~~ 463 (566)
T PF07575_consen 390 RERIEELLPRVPLDTNDDAEKLLEICAELGLEDVAREICKILGQR------LLKEGRYGEALSWFIRAGDYSLVTRIADR 463 (566)
T ss_dssp HHHHHHHGGG----SHHHHHHHHHHHHHHT-HHHHHHHHHHHHHH------HHHHHHHHHHHHHHH--------------
T ss_pred HHHHHHHHhhCCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHH------HHHCCCHHHHHHHHHHCCCHHHHHHHHHH
Confidence 333444433322334555666777888888888888877766541 11223455556666677776666555555
Q ss_pred HHH
Q 004480 389 MLS 391 (750)
Q Consensus 389 m~~ 391 (750)
+.+
T Consensus 464 ll~ 466 (566)
T PF07575_consen 464 LLE 466 (566)
T ss_dssp ---
T ss_pred HHH
Confidence 543
No 337
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=67.31 E-value=1.1e+02 Score=28.82 Aligned_cols=27 Identities=22% Similarity=0.176 Sum_probs=13.4
Q ss_pred HHHHHHhhccCcHHHHHHHHHHHHhCC
Q 004480 159 KNECQRLLDSGEVEMFVGLMEVLEEFR 185 (750)
Q Consensus 159 ~~~~~~~~~~g~~~~A~~~~~~~~~~~ 185 (750)
++-|..+...|++-++++--.+++...
T Consensus 234 lNy~QC~L~~~e~yevleh~seiL~~~ 260 (329)
T KOG0545|consen 234 LNYCQCLLKKEEYYEVLEHCSEILRHH 260 (329)
T ss_pred HhHHHHHhhHHHHHHHHHHHHHHHhcC
Confidence 333333444556666655555555433
No 338
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=66.56 E-value=1.2e+02 Score=28.61 Aligned_cols=73 Identities=15% Similarity=0.301 Sum_probs=38.9
Q ss_pred CCHHHHHHHHHHHHH--CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHcCCCCC-------HHHHHHHHHHHH
Q 004480 597 KRLKQAFSLFEEMKH--YQIQPNLVTYITLLRARSRYGSLHEVQQCLAVYQDMWKAGYKAN-------DTYLKELIEEWC 667 (750)
Q Consensus 597 g~~~~A~~~~~~m~~--~g~~p~~~t~~~li~~~~~~g~~~~~~~a~~~~~~m~~~g~~p~-------~~~~~~li~~~~ 667 (750)
.++++|+..|+..-+ .|-+.+...-.+++....-.+..++-.+|+.+|++.....+.-+ .+.+...+..+|
T Consensus 128 ~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n~LLKys~KdyflkAgLChl~ 207 (288)
T KOG1586|consen 128 QDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLDNNLLKYSAKDYFLKAGLCHLC 207 (288)
T ss_pred HHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHhHh
Confidence 345555555555442 22233444444555554445555566667888888776554433 234455555566
Q ss_pred hh
Q 004480 668 EG 669 (750)
Q Consensus 668 ~~ 669 (750)
+.
T Consensus 208 ~~ 209 (288)
T KOG1586|consen 208 KA 209 (288)
T ss_pred cc
Confidence 53
No 339
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=66.41 E-value=42 Score=29.99 Aligned_cols=64 Identities=16% Similarity=0.177 Sum_probs=37.0
Q ss_pred CCCC-HHHHHHHHHHHHHcC----C-------HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004480 579 MSPD-VVAYTTAIKVCVRSK----R-------LKQAFSLFEEMKHYQIQPNLVTYITLLRARSRYGSLHEVQQCLAVYQD 646 (750)
Q Consensus 579 ~~p~-~~~~~~li~~~~~~g----~-------~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~~~~a~~~~~~ 646 (750)
+.|+ ..++.++..+|...+ + +++|.+.|++..+ ..|+..+|+.-+.... +|-++..+
T Consensus 64 I~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~--~~P~ne~Y~ksLe~~~---------kap~lh~e 132 (186)
T PF06552_consen 64 INPNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVD--EDPNNELYRKSLEMAA---------KAPELHME 132 (186)
T ss_dssp H-TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH--H-TT-HHHHHHHHHHH---------THHHHHHH
T ss_pred cCCchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHh--cCCCcHHHHHHHHHHH---------hhHHHHHH
Confidence 3555 345555555554432 2 4556666666665 5899999998888753 35567777
Q ss_pred HHHcCCC
Q 004480 647 MWKAGYK 653 (750)
Q Consensus 647 m~~~g~~ 653 (750)
+.+.+..
T Consensus 133 ~~~~~~~ 139 (186)
T PF06552_consen 133 IHKQGLG 139 (186)
T ss_dssp HHHSSS-
T ss_pred HHHHHhh
Confidence 7776654
No 340
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=66.19 E-value=8.7 Score=22.68 Aligned_cols=26 Identities=19% Similarity=0.215 Sum_probs=15.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHh
Q 004480 224 FCNFVREFGKKRDLVSALRAYDASKK 249 (750)
Q Consensus 224 ~~~l~~~~~~~g~~~~A~~~~~~~~~ 249 (750)
+..+...+.+.|++++|.+.|+++.+
T Consensus 3 ~~~~a~~~~~~g~~~~A~~~~~~~~~ 28 (33)
T PF13174_consen 3 LYRLARCYYKLGDYDEAIEYFQRLIK 28 (33)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 34455556666666666666666654
No 341
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=65.89 E-value=15 Score=21.85 Aligned_cols=27 Identities=15% Similarity=0.295 Sum_probs=17.3
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 004480 223 LFCNFVREFGKKRDLVSALRAYDASKK 249 (750)
Q Consensus 223 ~~~~l~~~~~~~g~~~~A~~~~~~~~~ 249 (750)
+|..+...|...|++++|...|++..+
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~ 29 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 455566666666777777776666554
No 342
>KOG2005 consensus 26S proteasome regulatory complex, subunit RPN1/PSMD2 [Posttranslational modification, protein turnover, chaperones]
Probab=63.66 E-value=2.3e+02 Score=31.11 Aligned_cols=137 Identities=12% Similarity=0.056 Sum_probs=72.0
Q ss_pred CccHHHHHHHHHH--HHh--cHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHH
Q 004480 512 KPTTTTYNILMKA--CCT--DYYRVKALMNEMRTVGL---SPNHISWTILIDACGGSGNVEGALQILKIMREDGMSPDVV 584 (750)
Q Consensus 512 ~p~~~~~~~li~~--~~~--~~~~a~~l~~~m~~~~~---~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 584 (750)
++++..+.++--+ |++ +.+-+..+++.+.+++- .-.-.-|-.|.-+....|+-+.+..+.+....-+ .|=..
T Consensus 502 ~~ev~~~aslsLG~IfvGscn~dvts~ilqtlmekse~El~d~~~RFL~LGL~llflgkqe~~d~~~e~~~~i~-~~~~~ 580 (878)
T KOG2005|consen 502 PMEVVAFASLSLGMIFVGSCNEDVTSSILQTLMEKSETELEDQWFRFLALGLALLFLGKQESVDAVVETIKAIE-GPIRK 580 (878)
T ss_pred chhHHHHHHhhcceeEEecCChHHHHHHHHHHHHhhhhhhhchHHHHHHHHHHHHHhcccchHHHHHHHHHHhh-hHHHH
Confidence 4566666666554 333 56667776666555432 2222335555555555565555555555554422 23344
Q ss_pred HHHHHHHHHHHc--CCHHHHHH--HHHHHHHCCCCCCHHH---HHHHHHHHHhcCCHHHHHHHHHHHHHHHHcC
Q 004480 585 AYTTAIKVCVRS--KRLKQAFS--LFEEMKHYQIQPNLVT---YITLLRARSRYGSLHEVQQCLAVYQDMWKAG 651 (750)
Q Consensus 585 ~~~~li~~~~~~--g~~~~A~~--~~~~m~~~g~~p~~~t---~~~li~~~~~~g~~~~~~~a~~~~~~m~~~g 651 (750)
.-+.++..|+-. |++-+... +....-+. .-+... +..|--++...|+-=..+-+++.|..|...|
T Consensus 581 ~~~~lv~~caYaGTGnvl~Iq~q~ll~~cgE~--~~~~e~~~~~avLgiAliAMgeeig~eM~lR~f~h~l~yg 652 (878)
T KOG2005|consen 581 HESILVKSCAYAGTGNVLKIQSQLLLSFCGEH--DADLESEQELAVLGIALIAMGEEIGSEMVLRHFGHLLHYG 652 (878)
T ss_pred HHHHHHHHhhccccCceEEechhhhhhhcCCC--ccchhhhccchhhhhhhhhhhhhhhhHHHHHHHHHHHHcC
Confidence 556666666554 45444422 22221121 112333 5666666666676555666777777777665
No 343
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=63.51 E-value=2.3 Score=36.92 Aligned_cols=76 Identities=12% Similarity=0.155 Sum_probs=46.4
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 004480 554 LIDACGGSGNVEGALQILKIMREDGMSPDVVAYTTAIKVCVRSKRLKQAFSLFEEMKHYQIQPNLVTYITLLRARSRYGS 633 (750)
Q Consensus 554 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~ 633 (750)
+|..+.+.+.......+++.+...+..-+....+.++..|++.++.++..++++... ..-...++..|.+.|.
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~-------~yd~~~~~~~c~~~~l 85 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTSN-------NYDLDKALRLCEKHGL 85 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSS-------SS-CTHHHHHHHTTTS
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHccccc-------ccCHHHHHHHHHhcch
Confidence 455666677777777777777766555567777777777777777677776666221 1222345566666665
Q ss_pred HHH
Q 004480 634 LHE 636 (750)
Q Consensus 634 ~~~ 636 (750)
+++
T Consensus 86 ~~~ 88 (143)
T PF00637_consen 86 YEE 88 (143)
T ss_dssp HHH
T ss_pred HHH
Confidence 544
No 344
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=63.29 E-value=2.2e+02 Score=31.96 Aligned_cols=175 Identities=17% Similarity=0.145 Sum_probs=72.1
Q ss_pred HHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHhcCC
Q 004480 555 IDACGGSGNVEGALQILKIMREDGMSPDVVAYTTAIKVCVRSKRLKQAFSLFEEMKHYQ-IQPNLVTYITLLRARSRYGS 633 (750)
Q Consensus 555 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~t~~~li~~~~~~g~ 633 (750)
...+.-+|+++.|.+++-+ ..+...|.+.+...+.-|.- +.-....-..+.... -.|...-+..||..|.+.=.
T Consensus 265 f~~LlLtgqFE~AI~~L~~--~~~~~~dAVH~AIaL~~~gL---L~~~~~~~~~lls~~~~~~~~ln~arLI~~Y~~~F~ 339 (613)
T PF04097_consen 265 FQVLLLTGQFEAAIEFLYR--NEFNRVDAVHFAIALAYYGL---LRVSDSSSAPLLSVDPGDPPPLNFARLIGQYTRSFE 339 (613)
T ss_dssp HHHHHHTT-HHHHHHHHHT----T-HHHHHHHHHHHHHTT---------------------------HHHHHHHHHHTTT
T ss_pred HHHHHHHhhHHHHHHHHHh--hccCcccHHHHHHHHHHcCC---CCCCCccccceeeecCCCCCCcCHHHHHHHHHHHHh
Confidence 3445566788888777766 12223455555444443322 111111112222110 11222557777777777544
Q ss_pred HHHHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHH-h--------hhhhhhh-cccccch----hhhcccCCCchhHHHH
Q 004480 634 LHEVQQCLAVYQDMWKAGYKAN-DTYLKELIEEWC-E--------GVIQDKN-QNQGEVT----LCRRTNSQRPQSLLLE 698 (750)
Q Consensus 634 ~~~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~-~--------~~~~~~~-~~~~~~~----~~~~~~~~~~~~~~~~ 698 (750)
..+.+.|+++|--+....- |+ ...+...+..+. + |.+.... ...+.+. +.+-.....-...+.+
T Consensus 340 ~td~~~Al~Y~~li~~~~~-~~~~~l~~~~l~eLvletref~~LLG~i~~dG~r~~G~i~~~~~Li~~~~~~~~~~~i~~ 418 (613)
T PF04097_consen 340 ITDPREALQYLYLICLFKD-PEQRNLFHECLRELVLETREFDLLLGDINPDGSRTPGLIERRLSLIKFDDDEDFLREIIE 418 (613)
T ss_dssp TT-HHHHHHHHHGGGGS-S-CCHHHHHHHHHHHHHHHH--HHHHHEEE-TTS-EEE-HHHHTGGGGT-SSSSHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHcCC-chHHHHHHHHHHHHHHccCCHHHHCCCCCCCCccccceeeccccccCCCCcHHHHHHHHH
Confidence 4456666666655543222 22 122222222211 1 2222111 1111111 0011112233455677
Q ss_pred HHHHHHhhhhhhhhhhhhccccchhhHHHHHHHHhhhhc
Q 004480 699 KVAVHLQKSAAENLAIDLRGLTKVEARIIVLAVLRMMKE 737 (750)
Q Consensus 699 ~~~~~~~~~~~~~~~i~l~~l~~~~~~~~~~~~~~~~~~ 737 (750)
.++......+...-+|.+-.++. .+..|++++++...
T Consensus 419 ~~A~~~e~~g~~~dAi~Ly~La~--~~d~vl~lln~~Ls 455 (613)
T PF04097_consen 419 QAAREAEERGRFEDAILLYHLAE--EYDKVLSLLNRLLS 455 (613)
T ss_dssp HHHHHHHHCT-HHHHHHHHHHTT---HHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHh--hHHHHHHHHHHHHH
Confidence 77777777777777777766663 56677776666543
No 345
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=62.45 E-value=1.6e+02 Score=28.76 Aligned_cols=60 Identities=15% Similarity=0.138 Sum_probs=49.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCChHHHHHHHHHHhh
Q 004480 401 WSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTL 461 (750)
Q Consensus 401 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~ 461 (750)
++.....|..+|.+.+|.++.+....-. +.+...+-.++..+...|+--.+.+-++.+..
T Consensus 282 lgkva~~yle~g~~neAi~l~qr~ltld-pL~e~~nk~lm~~la~~gD~is~~khyerya~ 341 (361)
T COG3947 282 LGKVARAYLEAGKPNEAIQLHQRALTLD-PLSEQDNKGLMASLATLGDEISAIKHYERYAE 341 (361)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHhhcC-hhhhHHHHHHHHHHHHhccchhhhhHHHHHHH
Confidence 4555678889999999999999988764 56778889999999999998777777776654
No 346
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=61.86 E-value=33 Score=22.96 Aligned_cols=30 Identities=7% Similarity=0.097 Sum_probs=13.7
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 004480 596 SKRLKQAFSLFEEMKHYQIQPNLVTYITLL 625 (750)
Q Consensus 596 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~li 625 (750)
.|-..++..++++|.+.|+.-+...|..++
T Consensus 15 ~GlI~~~~~~l~~l~~~g~~is~~l~~~~L 44 (48)
T PF11848_consen 15 RGLISEVKPLLDRLQQAGFRISPKLIEEIL 44 (48)
T ss_pred cCChhhHHHHHHHHHHcCcccCHHHHHHHH
Confidence 344444444444444444444444444433
No 347
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=61.19 E-value=28 Score=24.88 Aligned_cols=46 Identities=7% Similarity=0.074 Sum_probs=26.6
Q ss_pred hHHHHHHHHHHHHhhhcCCCccCHHHHHHHHHHHHhccCHHHHHHHHHHHHH
Q 004480 340 TVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLS 391 (750)
Q Consensus 340 ~~~A~~~~~~~~~~~~~g~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 391 (750)
++...++++.++. ..-|-.-...+|.+|...|++++|.++.+++..
T Consensus 6 ~~~~~~~~~~lR~------~RHD~~NhLqvI~gllqlg~~~~a~eYi~~~~~ 51 (62)
T PF14689_consen 6 LEELEELIDSLRA------QRHDFLNHLQVIYGLLQLGKYEEAKEYIKELSK 51 (62)
T ss_dssp HHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH------HhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 3444455555544 234555556667777777777777777766653
No 348
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=61.10 E-value=86 Score=25.26 Aligned_cols=81 Identities=10% Similarity=-0.044 Sum_probs=46.5
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCccHHHHHHHHHhhcCChHHHHHHHH
Q 004480 234 KRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKFTLEVYK 313 (750)
Q Consensus 234 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~a~~~~~ 313 (750)
....++|..+.+.+...+. -...+--+-+..+...|+|++|+ . .......||...|-+|-....|-.+++...+.
T Consensus 19 ~HcH~EA~tIa~wL~~~~~-~~E~v~lIr~~sLmNrG~Yq~AL--l--~~~~~~~pdL~p~~AL~a~klGL~~~~e~~l~ 93 (116)
T PF09477_consen 19 HHCHQEANTIADWLEQEGE-MEEVVALIRLSSLMNRGDYQEAL--L--LPQCHCYPDLEPWAALCAWKLGLASALESRLT 93 (116)
T ss_dssp TT-HHHHHHHHHHHHHTTT-THHHHHHHHHHHHHHTT-HHHHH--H--HHTTS--GGGHHHHHHHHHHCT-HHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHhhHHHHHHH--H--hcccCCCccHHHHHHHHHHhhccHHHHHHHHH
Confidence 3456777777777776533 12222223334577788888882 1 12223468888888887777777777777777
Q ss_pred HHHHcC
Q 004480 314 NMQKLG 319 (750)
Q Consensus 314 ~m~~~g 319 (750)
++...|
T Consensus 94 rla~~g 99 (116)
T PF09477_consen 94 RLASSG 99 (116)
T ss_dssp HHCT-S
T ss_pred HHHhCC
Confidence 666554
No 349
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=61.00 E-value=1.7e+02 Score=28.62 Aligned_cols=66 Identities=12% Similarity=0.065 Sum_probs=46.9
Q ss_pred CCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 004480 543 GLSPNHISWTILIDACGGSGNVEGALQILKIMRED-GMSPDVVAYTTAIKVCVRSKRLKQAFSLFEE 608 (750)
Q Consensus 543 ~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 608 (750)
+-.++..+...+|..++..+++.+-.++|+.-... +..-|...|..+|+.....|+..-..++..+
T Consensus 197 ~~~l~~~vi~~Il~~L~~~~dW~kl~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~~ 263 (292)
T PF13929_consen 197 SKSLTRNVIISILEILAESRDWNKLFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIIDD 263 (292)
T ss_pred ccCCChhHHHHHHHHHHhcccHHHHHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhhC
Confidence 34566777777788888888888888887776654 4555777788888888888877665555553
No 350
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=60.87 E-value=1e+02 Score=32.04 Aligned_cols=128 Identities=12% Similarity=0.100 Sum_probs=0.0
Q ss_pred cHHHHHHHHHhhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHHcCChHHHHHHHHHHHHhhhcCCCccCHHHHHHH
Q 004480 290 NIYVFNSLMNVNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTI 369 (750)
Q Consensus 290 ~~~~~~~ll~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~g~~~~~~~~~~~l 369 (750)
+..+..+-=..-.|+...|-+-+....+.- +-++......-..+...|+++.+...+...... +.....+...+
T Consensus 290 ~~~~~si~k~~~~gd~~aas~~~~~~lr~~-~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~-----~~s~~~~~~~~ 363 (831)
T PRK15180 290 REITLSITKQLADGDIIAASQQLFAALRNQ-QQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKI-----IGTTDSTLRCR 363 (831)
T ss_pred hHHHHHHHHHhhccCHHHHHHHHHHHHHhC-CCCchhhHHHHHHHHHhhhHHHHHHHhhchhhh-----hcCCchHHHHH
Q ss_pred HHHHHhccCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 004480 370 VKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEM 424 (750)
Q Consensus 370 i~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m 424 (750)
++...+.|++++|...-..|+...++ +....+.-...--..|-+|++...|+++
T Consensus 364 ~r~~~~l~r~~~a~s~a~~~l~~eie-~~ei~~iaa~sa~~l~~~d~~~~~wk~~ 417 (831)
T PRK15180 364 LRSLHGLARWREALSTAEMMLSNEIE-DEEVLTVAAGSADALQLFDKSYHYWKRV 417 (831)
T ss_pred HHhhhchhhHHHHHHHHHHHhccccC-ChhheeeecccHHHHhHHHHHHHHHHHH
No 351
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=60.76 E-value=20 Score=23.45 Aligned_cols=22 Identities=9% Similarity=0.190 Sum_probs=10.3
Q ss_pred HHHHHhccCHHHHHHHHHHHHH
Q 004480 370 VKVFADAKWWQMALKVKEDMLS 391 (750)
Q Consensus 370 i~~~~~~g~~~~a~~~~~~m~~ 391 (750)
..+|...|+.+.|..+++++..
T Consensus 6 A~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 6 ARAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred HHHHHHcCChHHHHHHHHHHHH
Confidence 3444444444444444444443
No 352
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=60.75 E-value=13 Score=21.12 Aligned_cols=29 Identities=14% Similarity=0.108 Sum_probs=25.0
Q ss_pred hhHHHHHHHHhhcCChHHHHHHHHHHHHh
Q 004480 72 DYYADMASKLAKDGRLEEFAMIVESVVVS 100 (750)
Q Consensus 72 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 100 (750)
..+..++..+...|++++|...++..++.
T Consensus 2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~~ 30 (34)
T smart00028 2 EALYNLGNAYLKLGDYDEALEYYEKALEL 30 (34)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHHcc
Confidence 35677888999999999999999988876
No 353
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=59.79 E-value=22 Score=23.32 Aligned_cols=25 Identities=16% Similarity=0.218 Sum_probs=17.7
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhC
Q 004480 226 NFVREFGKKRDLVSALRAYDASKKH 250 (750)
Q Consensus 226 ~l~~~~~~~g~~~~A~~~~~~~~~~ 250 (750)
.|..+|...|+.+.|..+++++...
T Consensus 4 dLA~ayie~Gd~e~Ar~lL~evl~~ 28 (44)
T TIGR03504 4 DLARAYIEMGDLEGARELLEEVIEE 28 (44)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHc
Confidence 4566777777777777777777654
No 354
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=58.51 E-value=2.2e+02 Score=29.23 Aligned_cols=123 Identities=11% Similarity=-0.032 Sum_probs=72.2
Q ss_pred hhhhhhHHHHHHhhccCcHHHHHHHHHHHHhCC---CCCcccccHHHHHHHHHcCCChHHHHHHhhhCCCCcc---hHHH
Q 004480 153 SGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFR---LPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRADI---LFCN 226 (750)
Q Consensus 153 ~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~---~~~~ 226 (750)
...++|+.....+..+|+...|.+++++.+-.- +.+....... -...|+. ++=-..+.+.. +...
T Consensus 38 yHidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~-----~~~~g~~----rL~~~~~eNR~fflal~r 108 (360)
T PF04910_consen 38 YHIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRS-----NLTSGNC----RLDYRRPENRQFFLALFR 108 (360)
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhc-----ccccCcc----ccCCccccchHHHHHHHH
Confidence 456677777666677899999999888865211 0000000000 0000000 00000122333 3334
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH-HhcCCHHHHHHHHHHHHh
Q 004480 227 FVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVC-GICGDYMKSRAIYEDLRS 284 (750)
Q Consensus 227 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~-~~~g~~~~A~~~~~~m~~ 284 (750)
.+..+.++|-+..|+++.+-+...++.-|....-.+|+.| .+.++++--+++++....
T Consensus 109 ~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~ 167 (360)
T PF04910_consen 109 YIQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLA 167 (360)
T ss_pred HHHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhh
Confidence 6788999999999999999998876655666666777755 466778777777776544
No 355
>PHA02875 ankyrin repeat protein; Provisional
Probab=58.28 E-value=66 Score=33.89 Aligned_cols=67 Identities=19% Similarity=0.206 Sum_probs=29.4
Q ss_pred HHHHHCCCCCCHHH--HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH--HHHHHHHHHHHhCChHHHHHHHH
Q 004480 387 EDMLSAGVTPNTIT--WSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQ--CCNILLQACVEACQFDRAFRLFR 457 (750)
Q Consensus 387 ~~m~~~g~~p~~~~--~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~--~~~~ll~~~~~~g~~~~A~~~~~ 457 (750)
+.+.+.|..|+... ..+.+...+..|+.+ +.+.+.+.|..|+.. .....+...++.|+.+.+..+++
T Consensus 19 ~~Ll~~g~~~n~~~~~g~tpL~~A~~~~~~~----~v~~Ll~~ga~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~ 89 (413)
T PHA02875 19 RRLLDIGINPNFEIYDGISPIKLAMKFRDSE----AIKLLMKHGAIPDVKYPDIESELHDAVEEGDVKAVEELLD 89 (413)
T ss_pred HHHHHCCCCCCccCCCCCCHHHHHHHcCCHH----HHHHHHhCCCCccccCCCcccHHHHHHHCCCHHHHHHHHH
Confidence 33344555554322 122333444556654 333444445444322 11223444456677666555553
No 356
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=57.71 E-value=2.6e+02 Score=29.73 Aligned_cols=172 Identities=16% Similarity=0.125 Sum_probs=105.1
Q ss_pred ccCHHHHHHHHHHHHhccCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 004480 360 KLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNIL 439 (750)
Q Consensus 360 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l 439 (750)
..|.....+++..+..+..+.-.+.+..+|+..| -+-..|..++.+|... ..++-..+++++.+..+ -|.+.-..|
T Consensus 63 ~l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~df-nDvv~~ReL 138 (711)
T COG1747 63 LLDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDF-NDVVIGREL 138 (711)
T ss_pred cccchHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcc-hhHHHHHHH
Confidence 3455666777777888777877778888887764 2567777888888777 55667777777776532 233333444
Q ss_pred HHHHHHhCChHHHHHHHHHHhhcccccccCCCCCCchhhhhhhhhhhcccccCCCCccCCCccccccccCCCCccHHHHH
Q 004480 440 LQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYN 519 (750)
Q Consensus 440 l~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~ 519 (750)
..-|.+ ++...+..+|.+....-++.. ....=-..|.
T Consensus 139 a~~yEk-ik~sk~a~~f~Ka~yrfI~~~------------------------------------------q~~~i~evWe 175 (711)
T COG1747 139 ADKYEK-IKKSKAAEFFGKALYRFIPRR------------------------------------------QNAAIKEVWE 175 (711)
T ss_pred HHHHHH-hchhhHHHHHHHHHHHhcchh------------------------------------------hhhhHHHHHH
Confidence 444444 777777777777654322100 0000112344
Q ss_pred HHHHHHHhcHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCC
Q 004480 520 ILMKACCTDYYRVKALMNEMRTV-GLSPNHISWTILIDACGGSGNVEGALQILKIMREDG 578 (750)
Q Consensus 520 ~li~~~~~~~~~a~~l~~~m~~~-~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 578 (750)
-++.--..+.+....+...+.+. |...-.+.+.-+-.-|....++++|++++..+.+..
T Consensus 176 KL~~~i~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys~~eN~~eai~Ilk~il~~d 235 (711)
T COG1747 176 KLPELIGDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYSENENWTEAIRILKHILEHD 235 (711)
T ss_pred HHHHhccccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhccccCHHHHHHHHHHHhhhc
Confidence 44443344566666666666543 333445556666677888888999998888776643
No 357
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=56.73 E-value=2.1e+02 Score=28.39 Aligned_cols=179 Identities=10% Similarity=0.098 Sum_probs=0.0
Q ss_pred CchhHHHHHHHHHHhcCCCccccccchhhhhhHHHHHHhhccCcHHHHHHHHHHHHhCCCCCcccccHHHHHHHHHcC-C
Q 004480 127 GRIDCVVGVLKKLNELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNK-P 205 (750)
Q Consensus 127 g~~~~A~~~l~~~~~~~~~p~~~~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~ 205 (750)
++......+++.+.+.++.| .|..+.. .+.++--..+++.|.+.+ .....-....+.-.... |
T Consensus 36 ~~~~~~e~l~~~Ird~~Map-------~Ye~lce-------~~~i~~D~~~l~~m~~~n--eeki~eld~~iedaeenlG 99 (393)
T KOG0687|consen 36 QKAAAREKLLAAIRDEDMAP-------LYEYLCE-------SLVIKLDQDLLNSMKKAN--EEKIKELDEKIEDAEENLG 99 (393)
T ss_pred cCHHHHHHHHHHHHhcccch-------HHHHHHh-------hcceeccHHHHHHHHHhh--HHHHHHHHHHHHHHHHhcc
Q ss_pred ChHHHHHHhhhCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCCCHHHHHHHHH-HHHhcCCHHHHHHHHH
Q 004480 206 DVNLAIRYACIVPRADILFCNFVREFGKKRDLVSALRAYDASKKH----LSSPNMYICRTIID-VCGICGDYMKSRAIYE 280 (750)
Q Consensus 206 ~~~~A~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~~~~~~~~li~-~~~~~g~~~~A~~~~~ 280 (750)
..+.. .++-.....|++-|+-+.|++.+..-.+. |.+.|+..+.+-+. .|....-+.+-++..+
T Consensus 100 E~ev~-----------ea~~~kaeYycqigDkena~~~~~~t~~ktvs~g~kiDVvf~~iRlglfy~D~~lV~~~iekak 168 (393)
T KOG0687|consen 100 ESEVR-----------EAMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKIDVVFYKIRLGLFYLDHDLVTESIEKAK 168 (393)
T ss_pred hHHHH-----------HHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHhhccHHHHHHHHHHHH
Q ss_pred HHHhCCCCcc----HHHHHHHHHhhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHH
Q 004480 281 DLRSQNVTLN----IYVFNSLMNVNAHDLKFTLEVYKNMQKLGVMADMASYNILLK 332 (750)
Q Consensus 281 ~m~~~g~~~~----~~~~~~ll~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~ 332 (750)
.+.+.|..-+ .-+|..+-....+++.+|-.+|-+....--.-...+|..++.
T Consensus 169 ~liE~GgDWeRrNRlKvY~Gly~msvR~Fk~Aa~Lfld~vsTFtS~El~~Y~~~v~ 224 (393)
T KOG0687|consen 169 SLIEEGGDWERRNRLKVYQGLYCMSVRNFKEAADLFLDSVSTFTSYELMSYETFVR 224 (393)
T ss_pred HHHHhCCChhhhhhHHHHHHHHHHHHHhHHHHHHHHHHHcccccceecccHHHHHH
No 358
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=56.71 E-value=1.3e+02 Score=28.37 Aligned_cols=78 Identities=3% Similarity=-0.164 Sum_probs=46.3
Q ss_pred cCcHHHHHHHHHHHHhCCCCCcccccHHHHHHHHHcCCChHHHHHH----hhhCCCCcchHHHHHHHHHhcCCHHHHHHH
Q 004480 168 SGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRY----ACIVPRADILFCNFVREFGKKRDLVSALRA 243 (750)
Q Consensus 168 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~----~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 243 (750)
..+++.|+..|.+.+..+ |....++..-+-.+.+..+++.+..- .+..|.......-+..++.....+++|+..
T Consensus 23 ~k~y~~ai~~y~raI~~n--P~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~~~eaI~~ 100 (284)
T KOG4642|consen 23 PKRYDDAIDCYSRAICIN--PTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKGYDEAIKV 100 (284)
T ss_pred hhhhchHHHHHHHHHhcC--CCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhccccHHHHH
Confidence 466788888887777644 77767776666666666665554332 222233334444455555566666666666
Q ss_pred HHHH
Q 004480 244 YDAS 247 (750)
Q Consensus 244 ~~~~ 247 (750)
+.+.
T Consensus 101 Lqra 104 (284)
T KOG4642|consen 101 LQRA 104 (284)
T ss_pred HHHH
Confidence 6554
No 359
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=56.00 E-value=73 Score=31.55 Aligned_cols=92 Identities=15% Similarity=0.076 Sum_probs=55.6
Q ss_pred HHHHHcCChHHHHHHHHHHHHhhhcCCCcc-CHHHHHHHHHHHHhccCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 004480 332 KACCLAGNTVLAQEIYGEVKHLEAKGVLKL-DVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACAN 410 (750)
Q Consensus 332 ~~~~~~g~~~~A~~~~~~~~~~~~~g~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~ 410 (750)
+-|.+.|.+++|...|..... +.| |.+++..-..+|.+..++..|+.=....+..+ ..-+..|..-+.+-..
T Consensus 105 N~yFKQgKy~EAIDCYs~~ia------~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd-~~Y~KAYSRR~~AR~~ 177 (536)
T KOG4648|consen 105 NTYFKQGKYEEAIDCYSTAIA------VYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALD-KLYVKAYSRRMQARES 177 (536)
T ss_pred hhhhhccchhHHHHHhhhhhc------cCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhh-HHHHHHHHHHHHHHHH
Confidence 467889999999999987765 345 88888888888998888887766555555431 0011223333333333
Q ss_pred cCCHHHHHHHHHHHHHcCCCCC
Q 004480 411 AGLVEQAMHLFEEMLQAGCEPN 432 (750)
Q Consensus 411 ~g~~~~a~~~~~~m~~~~~~p~ 432 (750)
.|...+|.+-++..+. +.|.
T Consensus 178 Lg~~~EAKkD~E~vL~--LEP~ 197 (536)
T KOG4648|consen 178 LGNNMEAKKDCETVLA--LEPK 197 (536)
T ss_pred HhhHHHHHHhHHHHHh--hCcc
Confidence 3444444444444443 3555
No 360
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=55.58 E-value=39 Score=25.43 Aligned_cols=46 Identities=11% Similarity=0.100 Sum_probs=25.0
Q ss_pred cCCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHHcCCHHHHHHH
Q 004480 560 GSGNVEGALQILKIMREDGMSPD--VVAYTTAIKVCVRSKRLKQAFSL 605 (750)
Q Consensus 560 ~~g~~~~A~~~~~~m~~~g~~p~--~~~~~~li~~~~~~g~~~~A~~~ 605 (750)
...+.++|+..|....+.-..|. -.++..++.+|+..|++.+++++
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~f 65 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAF 65 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555666666666655422222 23455666666666666555544
No 361
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=55.31 E-value=3.5e+02 Score=30.49 Aligned_cols=71 Identities=7% Similarity=-0.104 Sum_probs=44.5
Q ss_pred HHHHHcCCChHHHHHHhhhCCCCc------chHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 004480 198 VQLCVNKPDVNLAIRYACIVPRAD------ILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGD 271 (750)
Q Consensus 198 ~~~~~~~~~~~~A~~~~~~~~~~~------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 271 (750)
+..+.+.+.+++|+...+..+.+. ..+-..|..+.-.|++++|-...-.|.. -+..-|..-+..+...++
T Consensus 363 i~Wll~~k~yeeAl~~~k~~~~~~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~g----n~~~eWe~~V~~f~e~~~ 438 (846)
T KOG2066|consen 363 IDWLLEKKKYEEALDAAKASIGNEERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLG----NNAAEWELWVFKFAELDQ 438 (846)
T ss_pred HHHHHHhhHHHHHHHHHHhccCCccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhc----chHHHHHHHHHHhccccc
Confidence 444556666777776665543322 3456677777777888888777777764 455566666666666555
Q ss_pred H
Q 004480 272 Y 272 (750)
Q Consensus 272 ~ 272 (750)
.
T Consensus 439 l 439 (846)
T KOG2066|consen 439 L 439 (846)
T ss_pred c
Confidence 4
No 362
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=55.26 E-value=36 Score=33.52 Aligned_cols=87 Identities=11% Similarity=-0.006 Sum_probs=60.7
Q ss_pred HHHhccCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCChH
Q 004480 372 VFADAKWWQMALKVKEDMLSAGVTP-NTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFD 450 (750)
Q Consensus 372 ~~~~~g~~~~a~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~ 450 (750)
-|.+.|.+++|++.|..-+.. .| |.+++..-..+|.+...+..|..-.......+ ..-...|+.-+.+-...|...
T Consensus 106 ~yFKQgKy~EAIDCYs~~ia~--~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd-~~Y~KAYSRR~~AR~~Lg~~~ 182 (536)
T KOG4648|consen 106 TYFKQGKYEEAIDCYSTAIAV--YPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALD-KLYVKAYSRRMQARESLGNNM 182 (536)
T ss_pred hhhhccchhHHHHHhhhhhcc--CCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhh-HHHHHHHHHHHHHHHHHhhHH
Confidence 488999999999999988765 44 88888888889999998887776666554432 122334555555555566666
Q ss_pred HHHHHHHHHhh
Q 004480 451 RAFRLFRSWTL 461 (750)
Q Consensus 451 ~A~~~~~~~~~ 461 (750)
+|.+-++....
T Consensus 183 EAKkD~E~vL~ 193 (536)
T KOG4648|consen 183 EAKKDCETVLA 193 (536)
T ss_pred HHHHhHHHHHh
Confidence 66666655443
No 363
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=55.23 E-value=2.1e+02 Score=27.97 Aligned_cols=121 Identities=12% Similarity=0.205 Sum_probs=76.1
Q ss_pred CCCCHhhHHHHHHHHHH-cC-ChHHHHHHHHHHHHhhhcCCCccCHHHHHHHHHHHHhccCHHHHHHHHHHHHHC-CCCC
Q 004480 320 VMADMASYNILLKACCL-AG-NTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSA-GVTP 396 (750)
Q Consensus 320 ~~~~~~~~~~ll~~~~~-~g-~~~~A~~~~~~~~~~~~~g~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-g~~p 396 (750)
+--|..+...+++.... .+ ....-.++.+-+.. ..| -.++..+...++..+++.++|..-.++++..... +..-
T Consensus 160 Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~--t~~-~~l~~~vi~~Il~~L~~~~dW~kl~~fW~~~~~~~~~~~ 236 (292)
T PF13929_consen 160 IIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVS--TFS-KSLTRNVIISILEILAESRDWNKLFQFWEQCIPNSVPGN 236 (292)
T ss_pred eeeChHHHHHHHHHHHhccccchhhHHHHHHHHHh--ccc-cCCChhHHHHHHHHHHhcccHHHHHHHHHHhcccCCCCC
Confidence 34466666666666655 22 12222233333332 112 3577778888899999999999999998887754 5566
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHH-----HHHcCCCCCHHHHHHHHHHH
Q 004480 397 NTITWSSLINACANAGLVEQAMHLFEE-----MLQAGCEPNSQCCNILLQAC 443 (750)
Q Consensus 397 ~~~~~~~li~~~~~~g~~~~a~~~~~~-----m~~~~~~p~~~~~~~ll~~~ 443 (750)
|...|..+|+...+.|+..-...+.++ +...++..+...-..+-..+
T Consensus 237 D~rpW~~FI~li~~sgD~~~~~kiI~~GhLLwikR~~V~v~~~L~~~L~~LF 288 (292)
T PF13929_consen 237 DPRPWAEFIKLIVESGDQEVMRKIIDDGHLLWIKRNNVDVTDELRSQLSELF 288 (292)
T ss_pred CCchHHHHHHHHHHcCCHHHHHHHhhCCCeEEeeecCCcCCHHHHHHHHHHH
Confidence 888899999999999988766665553 23334555555444444433
No 364
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=54.99 E-value=67 Score=22.09 Aligned_cols=34 Identities=12% Similarity=-0.006 Sum_probs=26.3
Q ss_pred hHHHHHHHHhhcCChHHHHHHHHHHHHhcCChhhHH
Q 004480 73 YYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFA 108 (750)
Q Consensus 73 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~ 108 (750)
....++-++.+.|++++|....+.+++. +|+.-+
T Consensus 3 ~lY~lAig~ykl~~Y~~A~~~~~~lL~~--eP~N~Q 36 (53)
T PF14853_consen 3 CLYYLAIGHYKLGEYEKARRYCDALLEI--EPDNRQ 36 (53)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHH--TTS-HH
T ss_pred hHHHHHHHHHHhhhHHHHHHHHHHHHhh--CCCcHH
Confidence 3446777889999999999999999999 666443
No 365
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=54.66 E-value=61 Score=29.76 Aligned_cols=52 Identities=10% Similarity=-0.038 Sum_probs=32.6
Q ss_pred cCCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 004480 560 GSGNVEGALQILKIMRED-GMSPDVVAYTTAIKVCVRSKRLKQAFSLFEEMKH 611 (750)
Q Consensus 560 ~~g~~~~A~~~~~~m~~~-g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 611 (750)
..++.+......+.+.+. ...|+..+|..++.++...|+.++|.+..+++..
T Consensus 120 ~~~~~~~l~~~~~~a~~~l~~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~ 172 (193)
T PF11846_consen 120 LPPDPEMLEAYIEWAERLLRRRPDPNVYQRYALALALLGDPEEARQWLARARR 172 (193)
T ss_pred CCCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 444444333333333221 2467888888888888888888888877777765
No 366
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=54.04 E-value=83 Score=29.17 Aligned_cols=76 Identities=12% Similarity=0.101 Sum_probs=52.7
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC--CCCCCHHHHHHHHH
Q 004480 550 SWTILIDACGGSGNVEGALQILKIMREDGMSP-DVVAYTTAIKVCVRSKRLKQAFSLFEEMKHY--QIQPNLVTYITLLR 626 (750)
Q Consensus 550 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--g~~p~~~t~~~li~ 626 (750)
|.+.-+..+.+.+.+.+|+...+.-++. +| |.-+-..++..||-.|++++|..-++-.-.. ...+-..+|..+|+
T Consensus 3 Tl~~t~seLL~~~sL~dai~~a~~qVka--kPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir 80 (273)
T COG4455 3 TLRDTISELLDDNSLQDAIGLARDQVKA--KPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIR 80 (273)
T ss_pred chHHHHHHHHHhccHHHHHHHHHHHHhc--CCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHH
Confidence 3445566777788888888888777765 44 4555666778888899999988777766532 23444667777776
Q ss_pred H
Q 004480 627 A 627 (750)
Q Consensus 627 ~ 627 (750)
+
T Consensus 81 ~ 81 (273)
T COG4455 81 C 81 (273)
T ss_pred H
Confidence 5
No 367
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=53.78 E-value=2.1e+02 Score=27.36 Aligned_cols=58 Identities=5% Similarity=-0.103 Sum_probs=37.0
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc-CCHHHHHHHHHHHH
Q 004480 226 NFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGIC-GDYMKSRAIYEDLR 283 (750)
Q Consensus 226 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~-g~~~~A~~~~~~m~ 283 (750)
-++..+.+.++++++...+.++...+...+..--|.+-.+|-.. |....+++++..+.
T Consensus 6 ~~Aklaeq~eRy~dmv~~mk~~~~~~~eLt~eERnLlsvayKn~i~~~R~s~R~l~~~e 64 (236)
T PF00244_consen 6 YLAKLAEQAERYDDMVEYMKQLIEMNPELTEEERNLLSVAYKNVIGSRRASWRILSSIE 64 (236)
T ss_dssp HHHHHHHHTTHHHHHHHHHHHHHHTSS---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhccccchHHHHhhhhHh
Confidence 35666777888999999999988877766766666666555322 44555566665554
No 368
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=53.67 E-value=56 Score=29.24 Aligned_cols=75 Identities=13% Similarity=0.207 Sum_probs=40.0
Q ss_pred HHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHhcC-----------CHHHHHHHHHHHHhCCCCccHHHHHHHHHhhcCC
Q 004480 237 LVSALRAYDASKKHLSSPNM-YICRTIIDVCGICG-----------DYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHD 304 (750)
Q Consensus 237 ~~~A~~~~~~~~~~~~~~~~-~~~~~li~~~~~~g-----------~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~ 304 (750)
+++|+.-|++.+. +.|+. .++..+..+|...+ .+++|...|+..... .|+..+|+.-+....+
T Consensus 51 iedAisK~eeAL~--I~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~~--~P~ne~Y~ksLe~~~k- 125 (186)
T PF06552_consen 51 IEDAISKFEEALK--INPNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVDE--DPNNELYRKSLEMAAK- 125 (186)
T ss_dssp HHHHHHHHHHHHH--H-TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH---TT-HHHHHHHHHHHT-
T ss_pred HHHHHHHHHHHHh--cCCchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHhc--CCCcHHHHHHHHHHHh-
Confidence 3444445555544 33543 35555555544332 256777777777665 6777777777776543
Q ss_pred hHHHHHHHHHHHHcC
Q 004480 305 LKFTLEVYKNMQKLG 319 (750)
Q Consensus 305 ~~~a~~~~~~m~~~g 319 (750)
|-+++.++.+.+
T Consensus 126 ---ap~lh~e~~~~~ 137 (186)
T PF06552_consen 126 ---APELHMEIHKQG 137 (186)
T ss_dssp ---HHHHHHHHHHSS
T ss_pred ---hHHHHHHHHHHH
Confidence 455555555543
No 369
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=53.24 E-value=2.3e+02 Score=27.73 Aligned_cols=75 Identities=9% Similarity=0.135 Sum_probs=44.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH--HcCCCCCHHHHH
Q 004480 585 AYTTAIKVCVRSKRLKQAFSLFEEMKHYQIQPNLVTYITLLRARSRYGSLHEVQQCLAVYQDMW--KAGYKANDTYLK 660 (750)
Q Consensus 585 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~~~~a~~~~~~m~--~~g~~p~~~~~~ 660 (750)
+++.....|..+|.+.+|.++.++..... ..+...|..|+..+...|+--.+.+=.+-+.+-. +.|+..|...++
T Consensus 281 llgkva~~yle~g~~neAi~l~qr~ltld-pL~e~~nk~lm~~la~~gD~is~~khyerya~vleaelgi~vddsiee 357 (361)
T COG3947 281 LLGKVARAYLEAGKPNEAIQLHQRALTLD-PLSEQDNKGLMASLATLGDEISAIKHYERYAEVLEAELGIDVDDSIEE 357 (361)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhhcC-hhhhHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHhCCCcchhHHH
Confidence 34555567777888888888877776532 2366677777777777777444332222222222 257766665544
No 370
>KOG4521 consensus Nuclear pore complex, Nup160 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=53.01 E-value=2.6e+02 Score=33.04 Aligned_cols=56 Identities=13% Similarity=0.177 Sum_probs=30.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCC--CC-HHHHHHHHHHHHhcCCHHHHHHHH
Q 004480 224 FCNFVREFGKKRDLVSALRAYDASKKHLSS--PN-MYICRTIIDVCGICGDYMKSRAIY 279 (750)
Q Consensus 224 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--~~-~~~~~~li~~~~~~g~~~~A~~~~ 279 (750)
|..+++.+-+.+-.+.+.++-...++.-.. |. ..+++++.+.....|.+.+|...+
T Consensus 986 Ylkv~rlle~hn~~E~vcQlA~~AIe~l~dd~ps~a~~~t~vFnhhldlgh~~qAy~ai 1044 (1480)
T KOG4521|consen 986 YLKVVRLLEEHNHAEEVCQLAVKAIENLPDDNPSVALISTTVFNHHLDLGHWFQAYKAI 1044 (1480)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhhhchhhHHHHHHHH
Confidence 445566666666666666665555543111 22 234555666666666666555444
No 371
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=52.29 E-value=52 Score=25.89 Aligned_cols=61 Identities=13% Similarity=0.035 Sum_probs=39.0
Q ss_pred HhhcCChHHHHHHHHHHHHhcCChhhHH--hhhhHHHHHHHHHhhhhcCchhHHHHHHHHHHhc
Q 004480 81 LAKDGRLEEFAMIVESVVVSEGNVSKFA--SMLSLEMVASGIVKSIREGRIDCVVGVLKKLNEL 142 (750)
Q Consensus 81 ~~~~g~~~~A~~~~~~~~~~~~~p~~~~--~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~ 142 (750)
..+.|++.+|.+.+.+..+....-.... ..+.. .+.++.......|++++|+..++++++.
T Consensus 8 ~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~-all~lA~~~~~~G~~~~A~~~l~eAi~~ 70 (94)
T PF12862_consen 8 ALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAY-ALLNLAELHRRFGHYEEALQALEEAIRL 70 (94)
T ss_pred HHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHH-HHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 4568999999777777665532111100 01112 2334566678899999999999999874
No 372
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=51.37 E-value=1.3e+02 Score=31.18 Aligned_cols=60 Identities=13% Similarity=0.114 Sum_probs=39.4
Q ss_pred HHHhhhhcCchhHHHHHHHHHHhcCCCccccccchhhhhhHHHHHHh--hccCcHHHHHHHHHHHHhC
Q 004480 119 GIVKSIREGRIDCVVGVLKKLNELGVAPLELFDGSGFKLLKNECQRL--LDSGEVEMFVGLMEVLEEF 184 (750)
Q Consensus 119 ~~~~~~~~g~~~~A~~~l~~~~~~~~~p~~~~~~~~~~~l~~~~~~~--~~~g~~~~A~~~~~~~~~~ 184 (750)
.+..+...++|..|.++|+.+.+. +.++.. +..+...|..| .+.-++++|.+.++.....
T Consensus 137 ~a~~l~n~~~y~aA~~~l~~l~~r-l~~~~~-----~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 137 RAKELFNRYDYGAAARILEELLRR-LPGREE-----YQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHh-CCchhh-----HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 444566889999999999998876 444332 33344433333 4467788888888876653
No 373
>PF13934 ELYS: Nuclear pore complex assembly
Probab=51.07 E-value=1.8e+02 Score=27.60 Aligned_cols=105 Identities=16% Similarity=0.081 Sum_probs=64.9
Q ss_pred hhhhhHHHHHHhhccCcHHHHHHHHHHHHhCCCCCcccccHHHHHHHHHcCCChHHHHHHhhhCCCCcchH---HHHHHH
Q 004480 154 GFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRADILF---CNFVRE 230 (750)
Q Consensus 154 ~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~---~~l~~~ 230 (750)
.+-.++.++. +.+.+++++|++.+-.. ... .+....+++++...|+++.|++++....+..... ..++..
T Consensus 78 ~~~~~~~g~W-~LD~~~~~~A~~~L~~p---s~~---~~~~~~Il~~L~~~~~~~lAL~y~~~~~p~l~s~~~~~~~~~~ 150 (226)
T PF13934_consen 78 KYIKFIQGFW-LLDHGDFEEALELLSHP---SLI---PWFPDKILQALLRRGDPKLALRYLRAVGPPLSSPEALTLYFVA 150 (226)
T ss_pred HHHHHHHHHH-HhChHhHHHHHHHhCCC---CCC---cccHHHHHHHHHHCCChhHHHHHHHhcCCCCCCHHHHHHHHHH
Confidence 3344455443 44579999999887431 111 3445678899998999999999998876544332 333334
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 004480 231 FGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGIC 269 (750)
Q Consensus 231 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 269 (750)
..++.+.+|...-+...+. -....+..++..+...
T Consensus 151 -La~~~v~EAf~~~R~~~~~---~~~~l~e~l~~~~~~~ 185 (226)
T PF13934_consen 151 -LANGLVTEAFSFQRSYPDE---LRRRLFEQLLEHCLEE 185 (226)
T ss_pred -HHcCCHHHHHHHHHhCchh---hhHHHHHHHHHHHHHH
Confidence 5568888888766655431 1133566666655533
No 374
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=50.21 E-value=3.1e+02 Score=28.30 Aligned_cols=66 Identities=14% Similarity=0.031 Sum_probs=46.9
Q ss_pred hhHHHHHHHHHHcCChHHHHHHHHHHHHhhhcCCCccCHHHHHHHHHHHHhccCHHHHHHHHHHHHHC
Q 004480 325 ASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSA 392 (750)
Q Consensus 325 ~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~g~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 392 (750)
..+.-+.+.|..+|+++.|.+.|.+.+.-...+ +..+..|..+|..-...|+|.....+..+....
T Consensus 151 ra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~--khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st 216 (466)
T KOG0686|consen 151 RALEDLGDHYLDCGQLDNALRCYSRARDYCTSA--KHVINMCLNLILVSIYMGNWGHVLSYISKAEST 216 (466)
T ss_pred HHHHHHHHHHHHhccHHHHHhhhhhhhhhhcch--HHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhC
Confidence 356778889999999999999999866532111 233455677777777788888877777766653
No 375
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=50.17 E-value=89 Score=29.42 Aligned_cols=76 Identities=13% Similarity=0.068 Sum_probs=60.1
Q ss_pred chhhccccCCcchhhhHHHHHHHHhhcCChHHHHHHHHHHHHhcCChhhHHhhhhHHHHHHHHHhhhhcCchhHHHHHHH
Q 004480 58 ALLSTVRRDLSSRNDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLK 137 (750)
Q Consensus 58 ~~~~~l~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~ 137 (750)
.+.+.+..+|.. +.+|..-+..+.+..+++.+..-...+++. .|+..-.....+.. +.....+++|+..|+
T Consensus 32 ~y~raI~~nP~~-~~Y~tnralchlk~~~~~~v~~dcrralql--~~N~vk~h~flg~~------~l~s~~~~eaI~~Lq 102 (284)
T KOG4642|consen 32 CYSRAICINPTV-ASYYTNRALCHLKLKHWEPVEEDCRRALQL--DPNLVKAHYFLGQW------LLQSKGYDEAIKVLQ 102 (284)
T ss_pred HHHHHHhcCCCc-chhhhhHHHHHHHhhhhhhhhhhHHHHHhc--ChHHHHHHHHHHHH------HHhhccccHHHHHHH
Confidence 366778999999 888988888999999999999888888877 66655444344433 778899999999999
Q ss_pred HHHhc
Q 004480 138 KLNEL 142 (750)
Q Consensus 138 ~~~~~ 142 (750)
++...
T Consensus 103 ra~sl 107 (284)
T KOG4642|consen 103 RAYSL 107 (284)
T ss_pred HHHHH
Confidence 98653
No 376
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=50.11 E-value=60 Score=21.72 Aligned_cols=33 Identities=9% Similarity=0.176 Sum_probs=22.6
Q ss_pred HcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 004480 559 GGSGNVEGALQILKIMREDGMSPDVVAYTTAIK 591 (750)
Q Consensus 559 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~ 591 (750)
.+.|-++++..++++|.+.|+..+...|..++.
T Consensus 13 k~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L~ 45 (48)
T PF11848_consen 13 KRRGLISEVKPLLDRLQQAGFRISPKLIEEILR 45 (48)
T ss_pred HHcCChhhHHHHHHHHHHcCcccCHHHHHHHHH
Confidence 455666677777777777777777776666654
No 377
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=50.07 E-value=2.3e+02 Score=27.55 Aligned_cols=50 Identities=10% Similarity=0.034 Sum_probs=20.7
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH-----hCChHHHHHHH
Q 004480 407 ACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVE-----ACQFDRAFRLF 456 (750)
Q Consensus 407 ~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~-----~g~~~~A~~~~ 456 (750)
-|.|.+.+..+.++-..-.+.--.-+...|.++...|.. .|.+++|+++.
T Consensus 127 LysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~VLlPLG~~~eAeelv 181 (309)
T PF07163_consen 127 LYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLHVLLPLGHFSEAEELV 181 (309)
T ss_pred HHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHHHHhccccHHHHHHHH
Confidence 344445554444444444332111222234444443333 35555555444
No 378
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=49.99 E-value=3.7e+02 Score=29.22 Aligned_cols=113 Identities=12% Similarity=0.044 Sum_probs=72.8
Q ss_pred CchhHHHHHHHHHHhcCCCccccccchhhhhhHHHHHHhhccCcHHHHHHHHHHHHhCCCCCcccccHHHHHHHHHc-CC
Q 004480 127 GRIDCVVGVLKKLNELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVN-KP 205 (750)
Q Consensus 127 g~~~~A~~~l~~~~~~~~~p~~~~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~ 205 (750)
.+.+.+...+..++. -.| ..++.+.+-+..-.+-|..+.+.++|++.+..- |.....|......+.. .|
T Consensus 59 ~~~~~~r~~y~~fL~--kyP------l~~gyW~kfA~~E~klg~~~~s~~Vfergv~ai--p~SvdlW~~Y~~f~~n~~~ 128 (577)
T KOG1258|consen 59 EDVDALREVYDIFLS--KYP------LCYGYWKKFADYEYKLGNAENSVKVFERGVQAI--PLSVDLWLSYLAFLKNNNG 128 (577)
T ss_pred hHHHHHHHHHHHHHh--hCc------cHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhh--hhHHHHHHHHHHHHhccCC
Confidence 333556666666664 244 233333332323344688889999999877633 5666666666665553 56
Q ss_pred ChHHHHHHhhhCC-------CCcchHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 004480 206 DVNLAIRYACIVP-------RADILFCNFVREFGKKRDLVSALRAYDASKK 249 (750)
Q Consensus 206 ~~~~A~~~~~~~~-------~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 249 (750)
+++.-...|+... .+...|-..|..-..++++.....+|++.++
T Consensus 129 d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRile 179 (577)
T KOG1258|consen 129 DPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILE 179 (577)
T ss_pred CHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHh
Confidence 6666566666542 2345677778777888999999999999987
No 379
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=49.17 E-value=1e+02 Score=33.61 Aligned_cols=78 Identities=19% Similarity=0.255 Sum_probs=59.2
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHHC--CCCCCHHHHHHHHHHHHHcCCHH--HHHHHHHH-HHHCCCCCCHHHHHHHHHH
Q 004480 553 ILIDACGGSGNVEGALQILKIMRED--GMSPDVVAYTTAIKVCVRSKRLK--QAFSLFEE-MKHYQIQPNLVTYITLLRA 627 (750)
Q Consensus 553 ~li~~~~~~g~~~~A~~~~~~m~~~--g~~p~~~~~~~li~~~~~~g~~~--~A~~~~~~-m~~~g~~p~~~t~~~li~~ 627 (750)
+|+.+|...|++..+.++++..... |-+.=...||..|..+.+.|.++ +..+-..+ +....+.-|..||..|+.+
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf~l~~~~~~~~~~lq~a~ln~d~~t~all~~~ 112 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSFELTDVLSNAKELLQQARLNGDSLTYALLCQA 112 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhhcCCcchHHHHHHHh
Confidence 8999999999999999999999874 33444678999999999999764 23333333 3345577789999998887
Q ss_pred HHh
Q 004480 628 RSR 630 (750)
Q Consensus 628 ~~~ 630 (750)
-..
T Consensus 113 sln 115 (1117)
T COG5108 113 SLN 115 (1117)
T ss_pred hcC
Confidence 544
No 380
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=48.92 E-value=62 Score=24.40 Aligned_cols=46 Identities=13% Similarity=0.226 Sum_probs=32.7
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhcCCHHHHHHH
Q 004480 233 KKRDLVSALRAYDASKKHLSSPN--MYICRTIIDVCGICGDYMKSRAI 278 (750)
Q Consensus 233 ~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~~ 278 (750)
..++.++|+..|....+.-..+. -.++..++.+|+..|++.++++.
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~f 65 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAF 65 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45778888888888877544332 23677788888888888776654
No 381
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=48.90 E-value=2.6e+02 Score=27.15 Aligned_cols=139 Identities=12% Similarity=0.047 Sum_probs=71.4
Q ss_pred hhhcCchhHHHHHHHHHHhcCCCccccccchhhhhhHHHHHHhhccCcHHHHHHHHHHHHhCCCCCcccccHHHHHHHHH
Q 004480 123 SIREGRIDCVVGVLKKLNELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCV 202 (750)
Q Consensus 123 ~~~~g~~~~A~~~l~~~~~~~~~p~~~~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 202 (750)
..+.+++++|+..|.+++..|+.-+..+.+.--.+++....-++..|++..-.+....... ....+.
T Consensus 13 ~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre-------------~m~~ft 79 (421)
T COG5159 13 AVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSSRE-------------AMEDFT 79 (421)
T ss_pred hhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhhHH-------------HHHHhc
Confidence 4588999999999999999988877765554444555555555555655444333322111 111111
Q ss_pred cCCChHHHHHHhhhCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 004480 203 NKPDVNLAIRYACIVPRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDL 282 (750)
Q Consensus 203 ~~~~~~~A~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 282 (750)
...-..-...+++.+|.....+.-.+..+...= +-|.+--..+.+ ...-.-++..+-+.|.+.+|+.+...+
T Consensus 80 k~k~~KiirtLiekf~~~~dsl~dqi~v~~~~i--ewA~rEkr~fLr------~~Le~Kli~l~y~~~~YsdalalIn~l 151 (421)
T COG5159 80 KPKITKIIRTLIEKFPYSSDSLEDQIKVLTALI--EWADREKRKFLR------LELECKLIYLLYKTGKYSDALALINPL 151 (421)
T ss_pred chhHHHHHHHHHHhcCCCCccHHHHHHHHHHHH--HHHHHHHHHHHH------HHHHHHHHHHHHhcccHHHHHHHHHHH
Confidence 111222223445566554443333333322211 111111111211 112234667778888888888776654
No 382
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=47.22 E-value=46 Score=23.76 Aligned_cols=25 Identities=12% Similarity=0.101 Sum_probs=12.9
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH
Q 004480 586 YTTAIKVCVRSKRLKQAFSLFEEMK 610 (750)
Q Consensus 586 ~~~li~~~~~~g~~~~A~~~~~~m~ 610 (750)
.-.+|.+|...|++++|.++++++.
T Consensus 26 hLqvI~gllqlg~~~~a~eYi~~~~ 50 (62)
T PF14689_consen 26 HLQVIYGLLQLGKYEEAKEYIKELS 50 (62)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 3344555555555555555555543
No 383
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=46.91 E-value=2.9e+02 Score=26.99 Aligned_cols=137 Identities=16% Similarity=0.196 Sum_probs=77.3
Q ss_pred CCccHHHHHHHHHhhcCChHHHHHHHHHHHHc-CCCCCHhhHHHHHHHHHHcCChHHHHHHHHHHHHh-hhcCCCccCHH
Q 004480 287 VTLNIYVFNSLMNVNAHDLKFTLEVYKNMQKL-GVMADMASYNILLKACCLAGNTVLAQEIYGEVKHL-EAKGVLKLDVF 364 (750)
Q Consensus 287 ~~~~~~~~~~ll~~~~~~~~~a~~~~~~m~~~-g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~-~~~g~~~~~~~ 364 (750)
++.|...+|+++.-.....++--+-.++..+. |-.--...+..+..-|++.++.+.+.+..++..+- ...| .+.|+.
T Consensus 77 ikfD~~~~n~l~kkneeki~Elde~i~~~eedngE~e~~ea~~n~aeyY~qi~D~~ng~~~~~~~~~~a~stg-~KiDv~ 155 (412)
T COG5187 77 IKFDRGRMNTLLKKNEEKIEELDERIREKEEDNGETEGSEADRNIAEYYCQIMDIQNGFEWMRRLMRDAMSTG-LKIDVF 155 (412)
T ss_pred eehhhHHHHHHHHhhHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcc-cchhhH
Confidence 44566667777664433333332223333322 22333456777888899999999998887765431 1233 455544
Q ss_pred HH-HHHHHHHHhccCHHHHHHHHHHHHHCCCCCCHH----HHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004480 365 TY-STIVKVFADAKWWQMALKVKEDMLSAGVTPNTI----TWSSLINACANAGLVEQAMHLFEEMLQ 426 (750)
Q Consensus 365 ~~-~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~----~~~~li~~~~~~g~~~~a~~~~~~m~~ 426 (750)
.. ..|.-.|....-.++-+++.+.|.+.|..-+.. +|.-+- +....++.+|-.++.+...
T Consensus 156 l~kiRlg~~y~d~~vV~e~lE~~~~~iEkGgDWeRrNRyK~Y~Gi~--~m~~RnFkeAa~Ll~d~l~ 220 (412)
T COG5187 156 LCKIRLGLIYGDRKVVEESLEVADDIIEKGGDWERRNRYKVYKGIF--KMMRRNFKEAAILLSDILP 220 (412)
T ss_pred HHHHHHHHhhccHHHHHHHHHHHHHHHHhCCCHHhhhhHHHHHHHH--HHHHHhhHHHHHHHHHHhc
Confidence 32 223334556666788888999999887643322 222221 1223467777777776654
No 384
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=46.44 E-value=4.8e+02 Score=29.49 Aligned_cols=59 Identities=15% Similarity=0.099 Sum_probs=34.0
Q ss_pred HHHHHhhcCChHHHHHHHHHHHHhcCChhhHHhhhhHHHHHHHHHhhhhcCchhHHHHHHHHHHh
Q 004480 77 MASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNE 141 (750)
Q Consensus 77 l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~ 141 (750)
-++-+.+.+.+++|+.+.+..... .|. +.. ..+-...|..+.-.|++++|-...-.|..
T Consensus 362 hi~Wll~~k~yeeAl~~~k~~~~~--~~~-~~i---~kv~~~yI~HLl~~~~y~~Aas~~p~m~g 420 (846)
T KOG2066|consen 362 HIDWLLEKKKYEEALDAAKASIGN--EER-FVI---KKVGKTYIDHLLFEGKYDEAASLCPKMLG 420 (846)
T ss_pred hHHHHHHhhHHHHHHHHHHhccCC--ccc-cch---HHHHHHHHHHHHhcchHHHHHhhhHHHhc
Confidence 355677788888888776654433 222 111 11112334445677888887777766664
No 385
>KOG2297 consensus Predicted translation factor, contains W2 domain [Translation, ribosomal structure and biogenesis]
Probab=45.92 E-value=3.1e+02 Score=27.05 Aligned_cols=66 Identities=15% Similarity=0.261 Sum_probs=32.9
Q ss_pred cCCCHHHHHHHH-HHHHHCCCCCCH----HHHHHHHHHHHHcCCH-HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 004480 560 GSGNVEGALQIL-KIMREDGMSPDV----VAYTTAIKVCVRSKRL-KQAFSLFEEMKHYQIQPNLVTYITLLRARSRYGS 633 (750)
Q Consensus 560 ~~g~~~~A~~~~-~~m~~~g~~p~~----~~~~~li~~~~~~g~~-~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~ 633 (750)
.-..+++..... ++|.+.++ |+. +.|++++++---..+- --|.+.++.+ .+|..|+.++|..|+
T Consensus 267 ~e~p~~evi~~VKee~k~~nl-Pe~eVi~ivWs~iMsaveWnKkeelva~qalrhl---------K~yaPLL~af~s~g~ 336 (412)
T KOG2297|consen 267 EEDPVKEVILYVKEEMKRNNL-PETEVIGIVWSGIMSAVEWNKKEELVAEQALRHL---------KQYAPLLAAFCSQGQ 336 (412)
T ss_pred cCCCHHHHHHHHHHHHHhcCC-CCceEEeeeHhhhhHHHhhchHHHHHHHHHHHHH---------HhhhHHHHHHhcCCh
Confidence 333445544444 44555443 443 2466666553322211 1233333333 457778888888887
Q ss_pred HH
Q 004480 634 LH 635 (750)
Q Consensus 634 ~~ 635 (750)
.+
T Consensus 337 sE 338 (412)
T KOG2297|consen 337 SE 338 (412)
T ss_pred HH
Confidence 55
No 386
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=44.19 E-value=45 Score=32.63 Aligned_cols=45 Identities=22% Similarity=0.323 Sum_probs=31.2
Q ss_pred CCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 004480 580 SPDVV-AYTTAIKVCVRSKRLKQAFSLFEEMKHYQIQPNLVTYITL 624 (750)
Q Consensus 580 ~p~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l 624 (750)
.||.. -|+..|..-.+.||+++|++++++.++.|+.--..||-.-
T Consensus 253 ~~dTe~Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tFik~ 298 (303)
T PRK10564 253 LNDTESYFNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTFISS 298 (303)
T ss_pred CchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHHHHH
Confidence 34544 3567888888888888888888888887776555555433
No 387
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=43.24 E-value=1.7e+02 Score=24.48 Aligned_cols=41 Identities=20% Similarity=0.352 Sum_probs=20.0
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 004480 570 ILKIMREDGMSPDVVAYTTAIKVCVRSKRLKQAFSLFEEMK 610 (750)
Q Consensus 570 ~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 610 (750)
-++......+.|+......-+.+|-+.+++.-|.++|+-.+
T Consensus 71 glN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK 111 (149)
T KOG4077|consen 71 GLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIK 111 (149)
T ss_pred HHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 33444444445555555555555555555555555554444
No 388
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=42.13 E-value=65 Score=22.14 Aligned_cols=30 Identities=13% Similarity=0.055 Sum_probs=22.7
Q ss_pred HHHHhhhhcCchhHHHHHHHHHHhcCCCcccc
Q 004480 118 SGIVKSIREGRIDCVVGVLKKLNELGVAPLEL 149 (750)
Q Consensus 118 ~~~~~~~~~g~~~~A~~~l~~~~~~~~~p~~~ 149 (750)
.+..++.+.|++++|.+..+.+++ ++|+..
T Consensus 6 ~lAig~ykl~~Y~~A~~~~~~lL~--~eP~N~ 35 (53)
T PF14853_consen 6 YLAIGHYKLGEYEKARRYCDALLE--IEPDNR 35 (53)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHH--HTTS-H
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHh--hCCCcH
Confidence 345567799999999999999998 677554
No 389
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=41.66 E-value=1.5e+02 Score=26.71 Aligned_cols=55 Identities=18% Similarity=0.199 Sum_probs=35.2
Q ss_pred hHHHHHHHHHHHHhcCChhhHHhhhhHHHHHHHHHhhhhcCchhHHHHHHHHHHh
Q 004480 87 LEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNE 141 (750)
Q Consensus 87 ~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~ 141 (750)
++.|+.+++.+.+....|......+..-+-...+..+.+.|.+++|.++|++..+
T Consensus 85 LESAl~v~~~I~~E~~~~~~lhe~i~~lik~~aV~VCm~~g~Fk~A~eiLkr~~~ 139 (200)
T cd00280 85 LESALMVLESIEKEFSLPETLHEEIRKLIKEQAVAVCMENGEFKKAEEVLKRLFS 139 (200)
T ss_pred HHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHhc
Confidence 3456677766665544443322222222224555668899999999999999986
No 390
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=41.30 E-value=30 Score=35.93 Aligned_cols=80 Identities=13% Similarity=0.080 Sum_probs=56.1
Q ss_pred hhhccccCCcchhhhHHHHHHHHhhcCChHHHHHHHHHHHHhcCChhhHHhhhhHHHHHHHHHhhhhcCchhHHHHHHHH
Q 004480 59 LLSTVRRDLSSRNDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKK 138 (750)
Q Consensus 59 ~~~~l~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~ 138 (750)
+.+.+..+|+. ..+|..-..++.+.+++..|+.=+.++++. +|......+.-+.. ..+.+++.+|...|+.
T Consensus 27 ysKaI~ldpnc-a~~~anRa~a~lK~e~~~~Al~Da~kaie~--dP~~~K~Y~rrg~a------~m~l~~~~~A~~~l~~ 97 (476)
T KOG0376|consen 27 YSKAIELDPNC-AIYFANRALAHLKVESFGGALHDALKAIEL--DPTYIKAYVRRGTA------VMALGEFKKALLDLEK 97 (476)
T ss_pred HHHHHhcCCcc-eeeechhhhhheeechhhhHHHHHHhhhhc--CchhhheeeeccHH------HHhHHHHHHHHHHHHH
Confidence 44568899988 777877789999999999999999999888 56533322222122 3455666777777776
Q ss_pred HHhcCCCcccc
Q 004480 139 LNELGVAPLEL 149 (750)
Q Consensus 139 ~~~~~~~p~~~ 149 (750)
... +.|+..
T Consensus 98 ~~~--l~Pnd~ 106 (476)
T KOG0376|consen 98 VKK--LAPNDP 106 (476)
T ss_pred hhh--cCcCcH
Confidence 665 667654
No 391
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=41.27 E-value=1.7e+02 Score=22.81 Aligned_cols=58 Identities=10% Similarity=0.008 Sum_probs=32.3
Q ss_pred hhhCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCC
Q 004480 214 ACIVPRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSP-NMYICRTIIDVCGICGD 271 (750)
Q Consensus 214 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~ 271 (750)
...-|.+..+...+...+...|++++|+..+-.+.+..... +...-..++..+.-.|.
T Consensus 15 ~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~ 73 (90)
T PF14561_consen 15 LAANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGP 73 (90)
T ss_dssp HHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-T
T ss_pred HHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCC
Confidence 33345555666667777777788888877777777654322 33444555555544444
No 392
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=41.26 E-value=24 Score=29.66 Aligned_cols=31 Identities=26% Similarity=0.380 Sum_probs=20.1
Q ss_pred hccCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 004480 375 DAKWWQMALKVKEDMLSAGVTPNTITWSSLINA 407 (750)
Q Consensus 375 ~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~ 407 (750)
..|.-.+|-.+|..|++.|-+||. |+.|+..
T Consensus 107 ~ygsk~DaY~VF~kML~~G~pPdd--W~~Ll~~ 137 (140)
T PF11663_consen 107 AYGSKTDAYAVFRKMLERGNPPDD--WDALLKE 137 (140)
T ss_pred hhccCCcHHHHHHHHHhCCCCCcc--HHHHHHH
Confidence 345555677777777777777765 6666554
No 393
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=41.14 E-value=1.5e+02 Score=32.48 Aligned_cols=73 Identities=22% Similarity=0.320 Sum_probs=50.4
Q ss_pred HHHHHHH--hcHHHHHHHHHHHHHc--CCCCCHHHHHHHHHHHHcCCCHH------HHHHHHHHHHHCCCCCCHHHHHHH
Q 004480 520 ILMKACC--TDYYRVKALMNEMRTV--GLSPNHISWTILIDACGGSGNVE------GALQILKIMREDGMSPDVVAYTTA 589 (750)
Q Consensus 520 ~li~~~~--~~~~~a~~l~~~m~~~--~~~p~~~~~~~li~~~~~~g~~~------~A~~~~~~m~~~g~~p~~~~~~~l 589 (750)
++..+|. +++.++.++++..... |-+.=...||..|..+.+.|.++ .|.+.+++.. +.-|..||..|
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf~l~~~~~~~~~~lq~a~---ln~d~~t~all 109 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSFELTDVLSNAKELLQQAR---LNGDSLTYALL 109 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhh---cCCcchHHHHH
Confidence 6778876 4678999999988864 22333556888899999999753 3444444443 55688888888
Q ss_pred HHHHHH
Q 004480 590 IKVCVR 595 (750)
Q Consensus 590 i~~~~~ 595 (750)
+.+-..
T Consensus 110 ~~~sln 115 (1117)
T COG5108 110 CQASLN 115 (1117)
T ss_pred HHhhcC
Confidence 776544
No 394
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=40.91 E-value=79 Score=33.03 Aligned_cols=97 Identities=15% Similarity=0.007 Sum_probs=68.0
Q ss_pred cCcHHHHHHHHHHHHhCCCCCcccccHHHHHHHHHcCCChHHHHHHhhhCCCCc----chHHHHHHHHHhcCCHHHHHHH
Q 004480 168 SGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRAD----ILFCNFVREFGKKRDLVSALRA 243 (750)
Q Consensus 168 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~A~~~ 243 (750)
.+.++.|+.++.++++.. |+.+.++..-..++.+.+++..|+.=+..+.... ..|..-..++.+.+++.+|+..
T Consensus 17 ~~~fd~avdlysKaI~ld--pnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~~~~~A~~~ 94 (476)
T KOG0376|consen 17 DKVFDVAVDLYSKAIELD--PNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMALGEFKKALLD 94 (476)
T ss_pred cchHHHHHHHHHHHHhcC--CcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHhHHHHHHHHHH
Confidence 688999999999999855 8888888777788888888888877655543322 3333344555566777777777
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHh
Q 004480 244 YDASKKHLSSPNMYICRTIIDVCGI 268 (750)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~li~~~~~ 268 (750)
|+.... +.|+..-....+.-|-+
T Consensus 95 l~~~~~--l~Pnd~~~~r~~~Ec~~ 117 (476)
T KOG0376|consen 95 LEKVKK--LAPNDPDATRKIDECNK 117 (476)
T ss_pred HHHhhh--cCcCcHHHHHHHHHHHH
Confidence 777665 55776666666655533
No 395
>PRK11619 lytic murein transglycosylase; Provisional
Probab=40.33 E-value=5.9e+02 Score=28.76 Aligned_cols=447 Identities=9% Similarity=-0.020 Sum_probs=219.7
Q ss_pred hhhcCchhHHHHHHHHHHhcCCCccccccchhhhhhHHHHHHhhccCcHHHHHHHHHHHHhCCCCCcccccHHHHHHHHH
Q 004480 123 SIREGRIDCVVGVLKKLNELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCV 202 (750)
Q Consensus 123 ~~~~g~~~~A~~~l~~~~~~~~~p~~~~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 202 (750)
..+.|++..+..+...+....+.| + ..+..+.. .+ ....+++....+++ ..-.|........-...+.
T Consensus 43 a~~~g~~~~~~~~~~~l~d~pL~~----y-l~y~~L~~---~l-~~~~~~ev~~Fl~~---~~~~P~~~~Lr~~~l~~La 110 (644)
T PRK11619 43 AWDNRQMDVVEQLMPTLKDYPLYP----Y-LEYRQLTQ---DL-MNQPAVQVTNFIRA---NPTLPPARSLQSRFVNELA 110 (644)
T ss_pred HHHCCCHHHHHHHHHhccCCCcHh----H-HHHHHHHh---cc-ccCCHHHHHHHHHH---CCCCchHHHHHHHHHHHHH
Confidence 347788888777766554322222 1 11111111 10 12235555554443 2222333333444455666
Q ss_pred cCCChHHHHHHhhhCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHH--HHHHHH
Q 004480 203 NKPDVNLAIRYACIVPRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMK--SRAIYE 280 (750)
Q Consensus 203 ~~~~~~~A~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~--A~~~~~ 280 (750)
+.++....++++...|.+....+....+....|+-++|......+=..|. .....++.++..+.+.|.+.. ..+=++
T Consensus 111 ~~~~w~~~~~~~~~~p~~~~~~c~~~~A~~~~G~~~~A~~~a~~lW~~g~-~~p~~cd~l~~~~~~~g~lt~~d~w~R~~ 189 (644)
T PRK11619 111 RREDWRGLLAFSPEKPKPVEARCNYYYAKWATGQQQEAWQGAKELWLTGK-SLPNACDKLFSVWQQSGKQDPLAYLERIR 189 (644)
T ss_pred HccCHHHHHHhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCC-CCChHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 77888888885555676667778888889999998877766666544433 345667777777776665433 222222
Q ss_pred HHHhCCCCccHHHHHHHHHhh--------------cCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHH--HcCChHHHH
Q 004480 281 DLRSQNVTLNIYVFNSLMNVN--------------AHDLKFTLEVYKNMQKLGVMADMASYNILLKACC--LAGNTVLAQ 344 (750)
Q Consensus 281 ~m~~~g~~~~~~~~~~ll~~~--------------~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~--~~g~~~~A~ 344 (750)
.+...|- ...-..+.... .++...+...+.. ++++...-..++-++. ...+.+.|.
T Consensus 190 ~al~~~~---~~lA~~l~~~l~~~~~~~a~a~~al~~~p~~~~~~~~~-----~~~~~~~~~~~~~~l~Rlar~d~~~A~ 261 (644)
T PRK11619 190 LAMKAGN---TGLVTYLAKQLPADYQTIASALIKLQNDPNTVETFART-----TGPTDFTRQMAAVAFASVARQDAENAR 261 (644)
T ss_pred HHHHCCC---HHHHHHHHHhcChhHHHHHHHHHHHHHCHHHHHHHhhc-----cCCChhhHHHHHHHHHHHHHhCHHHHH
Confidence 2233221 11111111111 1112222211111 1233322222222222 334568888
Q ss_pred HHHHHHHHhhhcCCCccC--HHHHHHHHHHHHhccCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 004480 345 EIYGEVKHLEAKGVLKLD--VFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFE 422 (750)
Q Consensus 345 ~~~~~~~~~~~~g~~~~~--~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~ 422 (750)
.++...... ..+.+. ...+..+.......+...++...++...... .+......-+..-.+.++++.+...+.
T Consensus 262 ~~~~~~~~~---~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~~--~~~~~~e~r~r~Al~~~dw~~~~~~i~ 336 (644)
T PRK11619 262 LMIPSLVRA---QKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMRS--QSTSLLERRVRMALGTGDRRGLNTWLA 336 (644)
T ss_pred HHHHHHHHh---cCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhccccc--CCcHHHHHHHHHHHHccCHHHHHHHHH
Confidence 888876431 112222 1234444444444433556666666544332 244445555555568899999999998
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHHhCChHHHHHHHHHHhhcccccccCCCCCCchhhhhhhhhhhcccccCCCCccCCCcc
Q 004480 423 EMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHY 502 (750)
Q Consensus 423 ~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 502 (750)
.|.... .-...-..-+..++...|+.++|...|+.+.... ++.|.......... .. .+.. ....
T Consensus 337 ~L~~~~-~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a~~~-------~fYG~LAa~~Lg~~-----~~-~~~~-~~~~- 400 (644)
T PRK11619 337 RLPMEA-KEKDEWRYWQADLLLEQGRKAEAEEILRQLMQQR-------GFYPMVAAQRLGEE-----YP-LKID-KAPK- 400 (644)
T ss_pred hcCHhh-ccCHhhHHHHHHHHHHcCCHHHHHHHHHHHhcCC-------CcHHHHHHHHcCCC-----CC-CCCC-CCCc-
Confidence 885532 2233344456677777899999999999874321 12221111110000 00 0000 0000
Q ss_pred ccccccCCCCccHHHHHHHHHHHHhcHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCC----
Q 004480 503 SSFDKRFSFKPTTTTYNILMKACCTDYYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQILKIMREDG---- 578 (750)
Q Consensus 503 ~~~~~~~~~~p~~~~~~~li~~~~~~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g---- 578 (750)
.... +..+...-.+..-...+....+...+..+... .+......+...-...|..+.+..........+
T Consensus 401 --~~~~--~~~~~~~~ra~~L~~~g~~~~a~~ew~~~~~~---~~~~~~~~la~~A~~~g~~~~ai~~~~~~~~~~~~~~ 473 (644)
T PRK11619 401 --PDSA--LTQGPEMARVRELMYWNMDNTARSEWANLVAS---RSKTEQAQLARYAFNQQWWDLSVQATIAGKLWDHLEE 473 (644)
T ss_pred --hhhh--hccChHHHHHHHHHHCCCHHHHHHHHHHHHhc---CCHHHHHHHHHHHHHCCCHHHHHHHHhhchhHHHHHH
Confidence 0000 00011111111111224556777777776664 344455555565667788777776664432210
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHH
Q 004480 579 MSPDVVAYTTAIKVCVRSKRLKQAFSLFEEMKHYQIQPNLVT 620 (750)
Q Consensus 579 ~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t 620 (750)
-.|. .|...+..+.+.-.++.++-+---..+.++.|+..+
T Consensus 474 rfp~--~~~~~~~~~a~~~~v~~~lv~ai~rqES~f~p~a~S 513 (644)
T PRK11619 474 RFPL--AWNDEFRRYTSGKGIPQSYAMAIARQESAWNPKARS 513 (644)
T ss_pred hCCc--chHHHHHHHHHHcCCCHHHHHHHHHHhcCCCCCCcc
Confidence 0122 366677777766666666644444456778887554
No 396
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=39.00 E-value=2.1e+02 Score=23.93 Aligned_cols=47 Identities=19% Similarity=0.347 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHC
Q 004480 531 RVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQILKIMRED 577 (750)
Q Consensus 531 ~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 577 (750)
+..+-++....-.+.|++.+...-+.+|-+.+++..|.++|+-.+.+
T Consensus 67 EvrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K 113 (149)
T KOG4077|consen 67 EVRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDK 113 (149)
T ss_pred HHHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 56666777777889999999999999999999999999999998864
No 397
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=38.84 E-value=2.6e+02 Score=27.72 Aligned_cols=53 Identities=17% Similarity=0.202 Sum_probs=36.2
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 004480 226 NFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRS 284 (750)
Q Consensus 226 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 284 (750)
.++..+.+++++......+..+.. ...-...++.+...|++..|++++.+..+
T Consensus 103 ~Il~~~rkr~~l~~ll~~L~~i~~------v~~~~~~l~~ll~~~dy~~Al~li~~~~~ 155 (291)
T PF10475_consen 103 EILRLQRKRQNLKKLLEKLEQIKT------VQQTQSRLQELLEEGDYPGALDLIEECQQ 155 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 355666666676676666666643 34445566667788999999988887654
No 398
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=38.69 E-value=3.9e+02 Score=26.15 Aligned_cols=66 Identities=11% Similarity=0.180 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHhccCHHHHHHHHHHHHH----CCCCCCHHHHHH-HHHHHHhcCCHHHHHHHHHHHHHcC
Q 004480 363 VFTYSTIVKVFADAKWWQMALKVKEDMLS----AGVTPNTITWSS-LINACANAGLVEQAMHLFEEMLQAG 428 (750)
Q Consensus 363 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~----~g~~p~~~~~~~-li~~~~~~g~~~~a~~~~~~m~~~~ 428 (750)
...+..+...|++.++.+.+.+..++..+ .|.+.|+...-+ |.-.|....-+++-++..+.|.++|
T Consensus 115 ~ea~~n~aeyY~qi~D~~ng~~~~~~~~~~a~stg~KiDv~l~kiRlg~~y~d~~vV~e~lE~~~~~iEkG 185 (412)
T COG5187 115 SEADRNIAEYYCQIMDIQNGFEWMRRLMRDAMSTGLKIDVFLCKIRLGLIYGDRKVVEESLEVADDIIEKG 185 (412)
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhC
Confidence 44566666777777777776666655443 344434322111 1222233333455555555555555
No 399
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=38.64 E-value=4.7e+02 Score=27.08 Aligned_cols=39 Identities=13% Similarity=0.120 Sum_probs=21.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHc-----CCCCCHHHHHHHH
Q 004480 400 TWSSLINACANAGLVEQAMHLFEEMLQA-----GCEPNSQCCNILL 440 (750)
Q Consensus 400 ~~~~li~~~~~~g~~~~a~~~~~~m~~~-----~~~p~~~~~~~ll 440 (750)
.+..+...| .+++...+++++++... -+.|.+.+.-.+|
T Consensus 308 lr~il~~fy--~sky~~cl~~L~~~k~~llLD~yLaphVd~Ly~~I 351 (466)
T KOG0686|consen 308 LREILFKFY--SSKYASCLELLREIKPRLLLDMYLAPHVDNLYSLI 351 (466)
T ss_pred HHHHHHHHh--hhhHHHHHHHHHHhccceeechhcchhHHHHHHHH
Confidence 344444433 35688888888887654 1344444444444
No 400
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=38.59 E-value=4.6e+02 Score=27.00 Aligned_cols=55 Identities=11% Similarity=0.063 Sum_probs=35.2
Q ss_pred CChHHHHHHHHHHHHhcCChhhHHhhhh-----HHHHHHHHHhhhhcCchhHHHHHHHHHH
Q 004480 85 GRLEEFAMIVESVVVSEGNVSKFASMLS-----LEMVASGIVKSIREGRIDCVVGVLKKLN 140 (750)
Q Consensus 85 g~~~~A~~~~~~~~~~~~~p~~~~~~~~-----~~~~~~~~~~~~~~g~~~~A~~~l~~~~ 140 (750)
..+.++...|..++..+ +|+....++. .+.+..+...+.++|+...|.+++++++
T Consensus 8 ~~Y~~~q~~F~~~v~~~-Dp~~l~~ll~~~PyHidtLlqls~v~~~~gd~~~A~~lleRAL 67 (360)
T PF04910_consen 8 KAYQEAQEQFYAAVQSH-DPNALINLLQKNPYHIDTLLQLSEVYRQQGDHAQANDLLERAL 67 (360)
T ss_pred HHHHHHHHHHHHHHHcc-CHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 34556666666666555 5554433322 3444556666889999999999988875
No 401
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=37.73 E-value=2.3e+02 Score=25.62 Aligned_cols=67 Identities=19% Similarity=0.264 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHHHCCCCCC--HHHH-----HHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 004480 564 VEGALQILKIMREDGMSPD--VVAY-----TTAIKVCVRSKRLKQAFSLFEEMKHYQIQPNLVTYITLLRARSRYGS 633 (750)
Q Consensus 564 ~~~A~~~~~~m~~~g~~p~--~~~~-----~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~ 633 (750)
++.|+.+|+.+.+.--.|. .... ...+..|.+.|.+++|.+++++... .|+......-+....+..+
T Consensus 85 LESAl~v~~~I~~E~~~~~~lhe~i~~lik~~aV~VCm~~g~Fk~A~eiLkr~~~---d~~~~~~r~kL~~II~~Kd 158 (200)
T cd00280 85 LESALMVLESIEKEFSLPETLHEEIRKLIKEQAVAVCMENGEFKKAEEVLKRLFS---DPESQKLRMKLLMIIREKD 158 (200)
T ss_pred HHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHhc---CCCchhHHHHHHHHHHccc
Confidence 4556666666655422221 1122 2234568888888999888888875 4555555555555444443
No 402
>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]
Probab=37.69 E-value=4.4e+02 Score=26.50 Aligned_cols=61 Identities=16% Similarity=0.102 Sum_probs=31.0
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHhhhcCCCccCHHHH--HHHHHHHHhccCHHHHHHHHHHHHH
Q 004480 330 LLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTY--STIVKVFADAKWWQMALKVKEDMLS 391 (750)
Q Consensus 330 ll~~~~~~g~~~~A~~~~~~~~~~~~~g~~~~~~~~~--~~li~~~~~~g~~~~a~~~~~~m~~ 391 (750)
++...-+.++.++|.+.++++...-..- -.|+.+.| ..+..++...|+..++.+.+++..+
T Consensus 81 ~l~~~~~~~D~~~al~~Le~i~~~~~~~-~e~~av~~~~t~~~r~~L~i~DLk~~kk~ldd~~~ 143 (380)
T KOG2908|consen 81 LLVVSEQISDKDEALEFLEKIIEKLKEY-KEPDAVIYILTEIARLKLEINDLKEIKKLLDDLKS 143 (380)
T ss_pred HHHHHHHhccHHHHHHHHHHHHHHHHhh-ccchhHHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 3444445556777777776665432221 23444433 2333444455566666555555544
No 403
>PHA02875 ankyrin repeat protein; Provisional
Probab=37.69 E-value=5e+02 Score=27.19 Aligned_cols=14 Identities=7% Similarity=0.216 Sum_probs=6.9
Q ss_pred HHHHHHHHHHcCCC
Q 004480 640 CLAVYQDMWKAGYK 653 (750)
Q Consensus 640 a~~~~~~m~~~g~~ 653 (750)
+.+-++.|....+.
T Consensus 299 C~~ei~~mk~~~i~ 312 (413)
T PHA02875 299 CIIELRRIKSEKIG 312 (413)
T ss_pred HHHHHHHHHhhccC
Confidence 34445556554443
No 404
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=37.05 E-value=4e+02 Score=25.88 Aligned_cols=130 Identities=14% Similarity=0.035 Sum_probs=62.9
Q ss_pred HHHHcCCCCCHhhHHHHHHHHHHcCChH-HHHHHHHHHHHhhhcC-CCccCHHHHHHHHHHHHhccCHHHHHHHHHHHHH
Q 004480 314 NMQKLGVMADMASYNILLKACCLAGNTV-LAQEIYGEVKHLEAKG-VLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLS 391 (750)
Q Consensus 314 ~m~~~g~~~~~~~~~~ll~~~~~~g~~~-~A~~~~~~~~~~~~~g-~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 391 (750)
-+.+.+.+.|......++..+...+.-+ +-.++.+.+.++.+.| .-.-|......+...|.+.|++.+|+..|-.-
T Consensus 39 v~~~~~~~~~~~~~~rl~~l~~~~~~~~p~r~~fi~~ai~WS~~~~~~~Gdp~LH~~~a~~~~~e~~~~~A~~Hfl~~-- 116 (260)
T PF04190_consen 39 VYEKSEDPVDEESIARLIELISLFPPEEPERKKFIKAAIKWSKFGSYKFGDPELHHLLAEKLWKEGNYYEAERHFLLG-- 116 (260)
T ss_dssp HHHHTT---SHHHHHHHHHHHHHS-TT-TTHHHHHHHHHHHHHTSS-TT--HHHHHHHHHHHHHTT-HHHHHHHHHTS--
T ss_pred HHHHcCCCCCHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHHhhccHHHHHHHHHhc--
Confidence 3333455555555555555554443221 2233344444332122 12346677888888899999998888776321
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCChHHHHHHHHHHhhc
Q 004480 392 AGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLS 462 (750)
Q Consensus 392 ~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~ 462 (750)
-.|+...+..++..+...|...++ |...-.+++. |.-.++...|...+....+.
T Consensus 117 --~~~~~~~~~~ll~~~~~~~~~~e~--------------dlfi~RaVL~-yL~l~n~~~A~~~~~~f~~~ 170 (260)
T PF04190_consen 117 --TDPSAFAYVMLLEEWSTKGYPSEA--------------DLFIARAVLQ-YLCLGNLRDANELFDTFTSK 170 (260)
T ss_dssp ---HHHHHHHHHHHHHHHHHTSS--H--------------HHHHHHHHHH-HHHTTBHHHHHHHHHHHHHH
T ss_pred --CChhHHHHHHHHHHHHHhcCCcch--------------hHHHHHHHHH-HHHhcCHHHHHHHHHHHHHH
Confidence 123333333344444444443332 2333333343 45567888888888776644
No 405
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=36.92 E-value=1.9e+02 Score=27.76 Aligned_cols=63 Identities=10% Similarity=-0.054 Sum_probs=42.4
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHhh-hcCCCccCHHHHHHHHHHHHhccCHHHHHHHHHHHH
Q 004480 328 NILLKACCLAGNTVLAQEIYGEVKHLE-AKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDML 390 (750)
Q Consensus 328 ~~ll~~~~~~g~~~~A~~~~~~~~~~~-~~g~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 390 (750)
-.+...|.+.|++++|.++|+.+...- ++|...+...+...+..++.+.|+.+..+.+--+|.
T Consensus 182 ~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~leLl 245 (247)
T PF11817_consen 182 LEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLELL 245 (247)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHh
Confidence 346677888899999998888875432 244444555566666777777777777766655543
No 406
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=35.29 E-value=2.1e+02 Score=28.18 Aligned_cols=60 Identities=7% Similarity=0.169 Sum_probs=49.9
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q 004480 531 RVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQILKIMREDGMSPDVVAYTTAIKVCVR 595 (750)
Q Consensus 531 ~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~ 595 (750)
.-.++++.+.+.++.|..+.|.-+.-.+.+.=.+.+.+.+|+.+.. |..-|..|+..||.
T Consensus 261 ~D~EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~s-----D~~rfd~Ll~iCcs 320 (370)
T KOG4567|consen 261 HDEELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLLS-----DPQRFDFLLYICCS 320 (370)
T ss_pred hhHHHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHhc-----ChhhhHHHHHHHHH
Confidence 3467889999999999999998888888899999999999999986 44448888887764
No 407
>PF05476 PET122: PET122; InterPro: IPR008732 The nuclear PET122 gene of Saccharomyces cerevisiae encodes a mitochondrial-localised protein that activates initiation of translation of the mitochondrial mRNA from the COX3 gene, which encodes subunit III of cytochrome c oxidase [].; GO: 0003743 translation initiation factor activity, 0006413 translational initiation, 0005740 mitochondrial envelope
Probab=35.18 E-value=4.1e+02 Score=25.43 Aligned_cols=57 Identities=7% Similarity=-0.020 Sum_probs=23.4
Q ss_pred HHHcCCHHHHHHHHHHHHHCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Q 004480 593 CVRSKRLKQAFSLFEEMKHYQ--IQPNLVTYITLLRARSRYGSLHEVQQCLAVYQDMWK 649 (750)
Q Consensus 593 ~~~~g~~~~A~~~~~~m~~~g--~~p~~~t~~~li~~~~~~g~~~~~~~a~~~~~~m~~ 649 (750)
-|+-|.++-..-+|.+.+... +-..+...--+...+...|+..-.++.+..|+.+-.
T Consensus 53 S~qwgHv~Si~yIW~k~Vmr~~~L~V~P~lLCDi~nlal~~~k~fip~ql~~hy~~~y~ 111 (267)
T PF05476_consen 53 SCQWGHVPSIDYIWYKYVMRRKVLLVEPRLLCDIGNLALHEGKYFIPSQLYMHYQKFYG 111 (267)
T ss_pred HHHHhcchHHHHHHHHHHhhccccccChhHHHHHHHHHHhcCCCcCHHHHHHHHHHHhc
Confidence 344444444444444443211 111222233444444444444444444445554443
No 408
>COG2178 Predicted RNA-binding protein of the translin family [Translation, ribosomal structure and biogenesis]
Probab=34.98 E-value=3.5e+02 Score=24.74 Aligned_cols=62 Identities=19% Similarity=0.072 Sum_probs=32.7
Q ss_pred HhhhhcCchhHHHHHHHHHHhc--CCCccccccchhhh-hhHHHHHHhhccCcHHHHHHHHHHHHhCCCC
Q 004480 121 VKSIREGRIDCVVGVLKKLNEL--GVAPLELFDGSGFK-LLKNECQRLLDSGEVEMFVGLMEVLEEFRLP 187 (750)
Q Consensus 121 ~~~~~~g~~~~A~~~l~~~~~~--~~~p~~~~~~~~~~-~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~ 187 (750)
....+.|++++|..-++++.+. .+.-....++..+. .+.+ . ....+-+|..++..+.+...+
T Consensus 37 I~~~H~~~~eeA~~~l~~a~~~v~~Lk~~l~~~pel~~ag~~~---~--a~QEyvEA~~l~~~l~~~~~p 101 (204)
T COG2178 37 IFLLHRGDFEEAEKKLKKASEAVEKLKRLLAGFPELYFAGFVT---T--ALQEYVEATLLYSILKDGRLP 101 (204)
T ss_pred HHHHHhccHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhc---c--hHHHHHHHHHHHHHHhcCCCC
Confidence 3456899999999888887653 01100000111111 1111 1 135677888888877665443
No 409
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=34.59 E-value=5.5e+02 Score=26.69 Aligned_cols=58 Identities=12% Similarity=0.024 Sum_probs=39.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH--HHHHHHHHHHh--cCCHHHHHHHHHHHHhC
Q 004480 227 FVREFGKKRDLVSALRAYDASKKHLSSPNMY--ICRTIIDVCGI--CGDYMKSRAIYEDLRSQ 285 (750)
Q Consensus 227 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~--~~~~li~~~~~--~g~~~~A~~~~~~m~~~ 285 (750)
.+..+.+.+++..|.++|+.+... ++++.. .+..+..+|.. .-++++|.+.++.....
T Consensus 137 ~a~~l~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 137 RAKELFNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 344455789999999999999876 444443 44455555443 35678888888877654
No 410
>smart00463 SMR Small MutS-related domain.
Probab=34.26 E-value=23 Score=26.82 Aligned_cols=28 Identities=29% Similarity=0.240 Sum_probs=17.7
Q ss_pred hhhhhccccchhhHHHHHHHHhhhhccc
Q 004480 712 LAIDLRGLTKVEARIIVLAVLRMMKENY 739 (750)
Q Consensus 712 ~~i~l~~l~~~~~~~~~~~~~~~~~~~~ 739 (750)
+.+|||||...++...+..+++..+...
T Consensus 2 ~~lDLHG~~~~eA~~~l~~~l~~~~~~~ 29 (80)
T smart00463 2 WSLDLHGLTVEEALTALDKFLNNARLKG 29 (80)
T ss_pred CeEEcCCCCHHHHHHHHHHHHHHHHHcC
Confidence 4566777776666666666666665543
No 411
>PRK10941 hypothetical protein; Provisional
Probab=33.85 E-value=1.9e+02 Score=28.22 Aligned_cols=62 Identities=8% Similarity=0.028 Sum_probs=49.7
Q ss_pred hHHHHHHHHhhcCChHHHHHHHHHHHHhcCChhhHHhhhhHHHHHHHHHhhhhcCchhHHHHHHHHHHhc
Q 004480 73 YYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNEL 142 (750)
Q Consensus 73 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~ 142 (750)
....+-..+.+.++++.|+...+.++.. .|+.+...-..+.+ |.+.|.+..|..=|+..++.
T Consensus 183 ml~nLK~~~~~~~~~~~AL~~~e~ll~l--~P~dp~e~RDRGll------~~qL~c~~~A~~DL~~fl~~ 244 (269)
T PRK10941 183 LLDTLKAALMEEKQMELALRASEALLQF--DPEDPYEIRDRGLI------YAQLDCEHVALSDLSYFVEQ 244 (269)
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHh--CCCCHHHHHHHHHH------HHHcCCcHHHHHHHHHHHHh
Confidence 4445556789999999999999999999 56655544455555 88999999999999999874
No 412
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=33.05 E-value=1.5e+02 Score=33.63 Aligned_cols=100 Identities=12% Similarity=0.082 Sum_probs=62.0
Q ss_pred HHHhhhhcCchhHHHHHHHHHHhcCCCccccccchhhhhhHHHHHHhhccCcHHHHHHHHHHHHhCCCCCcccccHHHHH
Q 004480 119 GIVKSIREGRIDCVVGVLKKLNELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIV 198 (750)
Q Consensus 119 ~~~~~~~~g~~~~A~~~l~~~~~~~~~p~~~~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~ 198 (750)
+|..+.+.|-++-|+...+.=.. -|+.-+. +|+.+.|++.-++ .++...|..|+
T Consensus 626 iIaYLqKkgypeiAL~FVkD~~t------------RF~LaLe-------~gnle~ale~akk-------ldd~d~w~rLg 679 (1202)
T KOG0292|consen 626 IIAYLQKKGYPEIALHFVKDERT------------RFELALE-------CGNLEVALEAAKK-------LDDKDVWERLG 679 (1202)
T ss_pred HHHHHHhcCCcceeeeeecCcch------------heeeehh-------cCCHHHHHHHHHh-------cCcHHHHHHHH
Confidence 44445677777777666432211 2233333 7888888887655 44566788899
Q ss_pred HHHHcCCChHHHHHHhhhCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHH
Q 004480 199 QLCVNKPDVNLAIRYACIVPRADILFCNFVREFGKKRDLVSALRAYDASK 248 (750)
Q Consensus 199 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 248 (750)
.....+|+.+-|+-.|+.... |..|--.|.-.|+.++-.++-+...
T Consensus 680 e~Al~qgn~~IaEm~yQ~~kn----fekLsfLYliTgn~eKL~Km~~iae 725 (1202)
T KOG0292|consen 680 EEALRQGNHQIAEMCYQRTKN----FEKLSFLYLITGNLEKLSKMMKIAE 725 (1202)
T ss_pred HHHHHhcchHHHHHHHHHhhh----hhheeEEEEEeCCHHHHHHHHHHHH
Confidence 998999999888888776532 2223233444566666666555443
No 413
>PF03745 DUF309: Domain of unknown function (DUF309); InterPro: IPR005500 This family consists of eubacterial and archaebacterial proteins of unknown function. The proteins contain a motif HXXXEXX(W/Y) where X can be any amino acid. This motif is likely to be functionally important and may be involved in metal binding.; PDB: 2CXD_B 2CWY_A 2IJQ_B.
Probab=32.80 E-value=1.4e+02 Score=21.33 Aligned_cols=52 Identities=19% Similarity=0.125 Sum_probs=33.5
Q ss_pred hhhcCchhHHHHHHHHHHhcCCCccccccchhhhhhHHHHHHh--hccCcHHHHHHHH
Q 004480 123 SIREGRIDCVVGVLKKLNELGVAPLELFDGSGFKLLKNECQRL--LDSGEVEMFVGLM 178 (750)
Q Consensus 123 ~~~~g~~~~A~~~l~~~~~~~~~p~~~~~~~~~~~l~~~~~~~--~~~g~~~~A~~~~ 178 (750)
+...|++-+|-++++.+......+ ....+..++.++..+ .+.|+...|..++
T Consensus 9 l~n~g~f~EaHEvlE~~W~~~~~~----~~~~lqglIq~A~a~~h~~~gn~~gA~~l~ 62 (62)
T PF03745_consen 9 LFNAGDFFEAHEVLEELWKAAPGP----ERDFLQGLIQLAVALYHLRRGNPRGARRLL 62 (62)
T ss_dssp HHHTT-HHHHHHHHHHHCCCT-CC----HHHHHHHHHHHHHHHHHHHCTSHHHHHHHH
T ss_pred HHcCCCHHHhHHHHHHHHHHCCcc----hHHHHHHHHHHHHHHHHHHhCCHHHHHHhC
Confidence 558999999999999999642222 224666666665554 3357777766553
No 414
>PF14669 Asp_Glu_race_2: Putative aspartate racemase
Probab=32.62 E-value=3.9e+02 Score=24.40 Aligned_cols=59 Identities=7% Similarity=0.042 Sum_probs=42.0
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhCCC--------------CCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 004480 223 LFCNFVREFGKKRDLVSALRAYDASKKHLS--------------SPNMYICRTIIDVCGICGDYMKSRAIYED 281 (750)
Q Consensus 223 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--------------~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 281 (750)
+--+++..|.+..+|.+.+++++.|.+..+ .+--..-|.-...+.+.|..+.|..++++
T Consensus 134 iGiS~m~~Yhk~~qW~KGrkvLd~l~el~i~ft~LKGL~g~e~~asrCqivn~AaEiFL~sgsidGA~~vLre 206 (233)
T PF14669_consen 134 IGISLMYSYHKTLQWSKGRKVLDKLHELQIHFTSLKGLTGPEKLASRCQIVNIAAEIFLKSGSIDGALWVLRE 206 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCccCccccCchhhhHHHHHHHHHHcCCchHHHHHHhc
Confidence 445677788888899999999988876321 12234556666777888888888887763
No 415
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=32.39 E-value=2.4e+02 Score=21.88 Aligned_cols=66 Identities=20% Similarity=0.168 Sum_probs=38.7
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCChHHHH
Q 004480 382 ALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAF 453 (750)
Q Consensus 382 a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~ 453 (750)
+.++++.+.+.|+- +......+-.+-...|+.+.|.++++.+. +| +..|..+++++...|.-+-|.
T Consensus 21 ~~~v~d~ll~~~il-T~~d~e~I~aa~~~~g~~~~ar~LL~~L~-rg----~~aF~~Fl~aLreT~~~~LA~ 86 (88)
T cd08819 21 TRDVCDKCLEQGLL-TEEDRNRIEAATENHGNESGARELLKRIV-QK----EGWFSKFLQALRETEHHELAR 86 (88)
T ss_pred HHHHHHHHHhcCCC-CHHHHHHHHHhccccCcHHHHHHHHHHhc-cC----CcHHHHHHHHHHHcCchhhhh
Confidence 45666677766643 33333333322235577788888888776 43 235677777777776655443
No 416
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=32.38 E-value=4.9e+02 Score=25.47 Aligned_cols=99 Identities=11% Similarity=0.032 Sum_probs=54.6
Q ss_pred HHHHHHhhcCChHHHHHHHHHHHHhc------CChhhHHhhhhHHHHHHHHHhhhhcCchhHHHHHHHHHHhc--CCCcc
Q 004480 76 DMASKLAKDGRLEEFAMIVESVVVSE------GNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNEL--GVAPL 147 (750)
Q Consensus 76 ~l~~~~~~~g~~~~A~~~~~~~~~~~------~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~--~~~p~ 147 (750)
..++.+.-.-+|..|+...++..+.= -+|..-..-+....+.-.|.+++..+++.+++.+.-+-.+. .+.|
T Consensus 40 ~Aad~LvV~rdF~aal~tCerglqsL~~~a~~ee~~~~~~evK~sLcvvGIQALAEmnrWreVLsWvlqyYq~pEklPp- 118 (309)
T PF07163_consen 40 EAADLLVVHRDFQAALETCERGLQSLASDADAEEPAGSSLEVKCSLCVVGIQALAEMNRWREVLSWVLQYYQVPEKLPP- 118 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccchhhhhhhhhhhhHHHHHHHhhHHHHHHHHHHHhcCcccCCH-
Confidence 44455555677777777777765431 12211111122334455788889999999887776444431 2333
Q ss_pred ccccchhhhhhHHHHHHhhccCcHHHHHHHHHHHHh
Q 004480 148 ELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEE 183 (750)
Q Consensus 148 ~~~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~ 183 (750)
..+...+-. |.+.|++....++-...+.
T Consensus 119 -----kIleLCILL---ysKv~Ep~amlev~~~WL~ 146 (309)
T PF07163_consen 119 -----KILELCILL---YSKVQEPAAMLEVASAWLQ 146 (309)
T ss_pred -----HHHHHHHHH---HHHhcCHHHHHHHHHHHHh
Confidence 233333332 3346777777777666554
No 417
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=32.26 E-value=5.4e+02 Score=25.94 Aligned_cols=109 Identities=12% Similarity=-0.036 Sum_probs=59.3
Q ss_pred hhhccccCCcchhhhHHHHHHHHhhc------------CChHHHHHHHHHHHHhcCChhhHHhhhhHHHHHHHHHhhhhc
Q 004480 59 LLSTVRRDLSSRNDYYADMASKLAKD------------GRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIRE 126 (750)
Q Consensus 59 ~~~~l~~~p~~~~~~~~~l~~~~~~~------------g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~ 126 (750)
+-+.++.+|.+ ...|..++..--.. .-.+.-+.+++++++. +|+.... +...+....+.
T Consensus 8 l~~~v~~~P~d-i~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~--np~~~~L------~l~~l~~~~~~ 78 (321)
T PF08424_consen 8 LNRRVRENPHD-IEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKH--NPDSERL------LLGYLEEGEKV 78 (321)
T ss_pred HHHHHHhCccc-HHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHh--CCCCHHH------HHHHHHHHHHh
Confidence 44567888888 77777776543222 1245567788888888 4543322 22344445566
Q ss_pred CchhHHHHHHHHHHhcCCCccccccchhhhhhHHHHHHhhccCcHHHHHHHHHHH
Q 004480 127 GRIDCVVGVLKKLNELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVL 181 (750)
Q Consensus 127 g~~~~A~~~l~~~~~~~~~p~~~~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~ 181 (750)
-+.++..+.+++++.. .|+.. .++..++.-...-...-.++...++|.+.
T Consensus 79 ~~~~~l~~~we~~l~~--~~~~~---~LW~~yL~~~q~~~~~f~v~~~~~~y~~~ 128 (321)
T PF08424_consen 79 WDSEKLAKKWEELLFK--NPGSP---ELWREYLDFRQSNFASFTVSDVRDVYEKC 128 (321)
T ss_pred CCHHHHHHHHHHHHHH--CCCCh---HHHHHHHHHHHHHhccCcHHHHHHHHHHH
Confidence 6777777778887764 33222 34444444333222233445555555443
No 418
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=31.73 E-value=4.3e+02 Score=24.74 Aligned_cols=98 Identities=13% Similarity=0.024 Sum_probs=49.8
Q ss_pred HhhcCChHHHHHHHHHHHHhc----CChhhHHhhhhHHHHHHHHHhhhhcCch-------hHHHHHHHHHHhcCCCcccc
Q 004480 81 LAKDGRLEEFAMIVESVVVSE----GNVSKFASMLSLEMVASGIVKSIREGRI-------DCVVGVLKKLNELGVAPLEL 149 (750)
Q Consensus 81 ~~~~g~~~~A~~~~~~~~~~~----~~p~~~~~~~~~~~~~~~~~~~~~~g~~-------~~A~~~l~~~~~~~~~p~~~ 149 (750)
+.....+++|++.+.-++-.. ..|.. ...++..+.-.|-..|+. ..|++.|.++.+..-.|...
T Consensus 87 ~~~~Rt~~~ai~~YkLAll~~~~~~~~~s~-----~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~ 161 (214)
T PF09986_consen 87 FSGERTLEEAIESYKLALLCAQIKKEKPSK-----KAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEG 161 (214)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHhCCCHHH-----HHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCC
Confidence 444567778877776655331 12221 122233344444455553 35666776666654333322
Q ss_pred ccchhhhhhHHHHHHhhccCcHHHHHHHHHHHHhCC
Q 004480 150 FDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFR 185 (750)
Q Consensus 150 ~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~ 185 (750)
.....+..++..+. .+.|+.++|...|.++...+
T Consensus 162 ~~~~~l~YLigeL~--rrlg~~~eA~~~fs~vi~~~ 195 (214)
T PF09986_consen 162 MDEATLLYLIGELN--RRLGNYDEAKRWFSRVIGSK 195 (214)
T ss_pred chHHHHHHHHHHHH--HHhCCHHHHHHHHHHHHcCC
Confidence 22222222222211 23688888888888877654
No 419
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=31.54 E-value=4.6e+02 Score=24.88 Aligned_cols=38 Identities=13% Similarity=0.009 Sum_probs=18.0
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 004480 243 AYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDL 282 (750)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 282 (750)
+.+-....++.-+.....+++ +...||..+|+..++.-
T Consensus 181 l~~v~k~Ekv~yt~dgLeaii--fta~GDMRQalNnLQst 218 (333)
T KOG0991|consen 181 LLEVAKAEKVNYTDDGLEAII--FTAQGDMRQALNNLQST 218 (333)
T ss_pred HHHHHHHhCCCCCcchHHHhh--hhccchHHHHHHHHHHH
Confidence 333333334433333444444 34566666666665543
No 420
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=31.02 E-value=1.5e+02 Score=31.12 Aligned_cols=129 Identities=11% Similarity=0.038 Sum_probs=69.5
Q ss_pred hhhHHHHHHHHhhcCChHHHHHHHHHHHHhcCChh-hHHhhhhHHHH-HHHHHhhhhcCchhHHHHHHHHHHh-------
Q 004480 71 NDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVS-KFASMLSLEMV-ASGIVKSIREGRIDCVVGVLKKLNE------- 141 (750)
Q Consensus 71 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~~~~~~-~~~~~~~~~~g~~~~A~~~l~~~~~------- 141 (750)
+.+...-.+..--.|++..|.+++...--.. .|. ..+.-+...++ ++++..+.+.|.+.-+..+|.++++
T Consensus 240 ~~~l~LKsq~eY~~gn~~kA~KlL~~sni~~-~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~ 318 (696)
T KOG2471|consen 240 SMALLLKSQLEYAHGNHPKAMKLLLVSNIHK-EAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLR 318 (696)
T ss_pred cHHHHHHHHHHHHhcchHHHHHHHHhccccc-ccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHh
Confidence 4444455556666799999988876542111 111 11111112222 4555567778888877777777664
Q ss_pred cCCCcccc---ccchhhhhhHHHHHHhhccCcHHHHHHHHHHHHhCCCCCcccccHHHHHHHHH
Q 004480 142 LGVAPLEL---FDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCV 202 (750)
Q Consensus 142 ~~~~p~~~---~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 202 (750)
.|+.|... ..+..+.++-+....+...|++..|.+.|.+.+. +...++..|..+..+|.
T Consensus 319 ~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~--vfh~nPrlWLRlAEcCi 380 (696)
T KOG2471|consen 319 NGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVH--VFHRNPRLWLRLAECCI 380 (696)
T ss_pred ccCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHH--HHhcCcHHHHHHHHHHH
Confidence 35555432 1122333444444445556777777777766554 22444555666666554
No 421
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=31.00 E-value=2.6e+02 Score=21.87 Aligned_cols=20 Identities=15% Similarity=0.267 Sum_probs=11.1
Q ss_pred HHHHhccCHHHHHHHHHHHH
Q 004480 371 KVFADAKWWQMALKVKEDML 390 (750)
Q Consensus 371 ~~~~~~g~~~~a~~~~~~m~ 390 (750)
......|++++|...+++.+
T Consensus 49 ~~~~~~G~~~~A~~~l~eAi 68 (94)
T PF12862_consen 49 ELHRRFGHYEEALQALEEAI 68 (94)
T ss_pred HHHHHhCCHHHHHHHHHHHH
Confidence 33445566666666665554
No 422
>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1. Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.
Probab=30.64 E-value=71 Score=26.79 Aligned_cols=54 Identities=13% Similarity=-0.121 Sum_probs=27.3
Q ss_pred hHHHHHHhhccCcHHHHHHHHHHHHhCCCCCcccccHHHHHHHHHcCCChHHHHHH
Q 004480 158 LKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRY 213 (750)
Q Consensus 158 l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 213 (750)
+++.|..+++ ..+++.++|..|...++...-...|......+...|++.+|.++
T Consensus 68 yLkiWi~ya~--~~~dp~~if~~L~~~~IG~~~AlfYe~~A~~lE~~g~~~~A~~i 121 (125)
T smart00777 68 YLKIWLKYAD--NCDEPRELFQFLYSKGIGTKLALFYEEWAQLLEAAGRYKKADEV 121 (125)
T ss_pred HHHHHHHHHH--hcCCHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHH
Confidence 3445555543 23456778888887776544433333333333344444444433
No 423
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=30.47 E-value=2.6e+02 Score=30.28 Aligned_cols=45 Identities=11% Similarity=0.119 Sum_probs=30.7
Q ss_pred CcchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 004480 220 ADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDV 265 (750)
Q Consensus 220 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~ 265 (750)
.+.++..+.++|....+++.|++.|.+..+... .+...-+.|...
T Consensus 675 epl~~~~~g~~~l~l~~i~~a~~~~~~a~~~~~-~~~~~~~~l~~i 719 (886)
T KOG4507|consen 675 EPLTFLSLGNAYLALKNISGALEAFRQALKLTT-KCPECENSLKLI 719 (886)
T ss_pred CchHHHhcchhHHHHhhhHHHHHHHHHHHhcCC-CChhhHHHHHHH
Confidence 346677778888888888888888888776432 345555555543
No 424
>TIGR02710 CRISPR-associated protein, TIGR02710 family. Members of this family are found, exclusively in the vicinity of CRISPR repeats and other CRISPR-associated (cas) genes, in Methanothermobacter thermautotrophicus (Archaea), Thermus thermophilus (Deinococcus-Thermus), Chloroflexus aurantiacus (Chloroflexi), and Thermomicrobium roseum (Thermomicrobia).
Probab=30.46 E-value=4.1e+02 Score=27.46 Aligned_cols=59 Identities=10% Similarity=-0.033 Sum_probs=42.2
Q ss_pred HHHhhhhcCchhHHHHHHHHHHhcCCCccccccchhhhhhHHHHHHh--hccCcHHHHHHHHHH
Q 004480 119 GIVKSIREGRIDCVVGVLKKLNELGVAPLELFDGSGFKLLKNECQRL--LDSGEVEMFVGLMEV 180 (750)
Q Consensus 119 ~~~~~~~~g~~~~A~~~l~~~~~~~~~p~~~~~~~~~~~l~~~~~~~--~~~g~~~~A~~~~~~ 180 (750)
.+..+...+++..|.++|+++.+..+.|+.. .-+..+...|..| .+.-++++|.+.+++
T Consensus 136 ~~r~l~n~~dy~aA~~~~~~L~~r~l~~~~~---~~~~~~~~l~~~y~~WD~fd~~~A~~~L~~ 196 (380)
T TIGR02710 136 YARRAINAFDYLFAHARLETLLRRLLSAVNH---TFYEAMIKLTRAYLHWDRFEHEEALDYLND 196 (380)
T ss_pred HHHHHHHhcChHHHHHHHHHHHhcccChhhh---hHHHHHHHHHHHHHHHHccCHHHHHHHHhh
Confidence 4456779999999999999999876655443 3344444444444 446778899998885
No 425
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=30.34 E-value=2.7e+02 Score=25.43 Aligned_cols=30 Identities=13% Similarity=-0.173 Sum_probs=13.7
Q ss_pred cCHHHHHHHHHHHHhccCHHHHHHHHHHHH
Q 004480 361 LDVFTYSTIVKVFADAKWWQMALKVKEDML 390 (750)
Q Consensus 361 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 390 (750)
|+..+|..++..+...|+.++|.+...++.
T Consensus 142 P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~ 171 (193)
T PF11846_consen 142 PDPNVYQRYALALALLGDPEEARQWLARAR 171 (193)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 444444444444444444444444444443
No 426
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=29.87 E-value=46 Score=33.02 Aligned_cols=85 Identities=13% Similarity=-0.049 Sum_probs=49.9
Q ss_pred cCcHHHHHHHHHHHHhCCCCCcccccHHHHHHHHHcCCChHHHHHHhhhC----CCCcchHHHHHHHHHhcCCHHHHHHH
Q 004480 168 SGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIV----PRADILFCNFVREFGKKRDLVSALRA 243 (750)
Q Consensus 168 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~----~~~~~~~~~l~~~~~~~g~~~~A~~~ 243 (750)
.|.++.|++.|...+... |.....+..-.+++....++..|++-+... +++..-|-.-..+-.-.|+|++|.+.
T Consensus 127 ~G~~~~ai~~~t~ai~ln--p~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e~aa~d 204 (377)
T KOG1308|consen 127 DGEFDTAIELFTSAIELN--PPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWEEAAHD 204 (377)
T ss_pred CcchhhhhcccccccccC--CchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhchHHHHHH
Confidence 688999999988877755 666666666666666667776666644332 22222222223333344666666666
Q ss_pred HHHHHhCCCCC
Q 004480 244 YDASKKHLSSP 254 (750)
Q Consensus 244 ~~~~~~~~~~~ 254 (750)
|....+.++.+
T Consensus 205 l~~a~kld~dE 215 (377)
T KOG1308|consen 205 LALACKLDYDE 215 (377)
T ss_pred HHHHHhccccH
Confidence 66666554433
No 427
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=29.60 E-value=1e+02 Score=30.33 Aligned_cols=41 Identities=17% Similarity=0.244 Sum_probs=30.1
Q ss_pred CCHH-HHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHH
Q 004480 546 PNHI-SWTILIDACGGSGNVEGALQILKIMREDGMSPDVVAY 586 (750)
Q Consensus 546 p~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~ 586 (750)
||.. -|+..|..-.+.||+++|++++++.++.|+.--..+|
T Consensus 254 ~dTe~Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tF 295 (303)
T PRK10564 254 NDTESYFNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTF 295 (303)
T ss_pred chHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHH
Confidence 4444 3678888888888888888888888888876444444
No 428
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=29.42 E-value=42 Score=28.25 Aligned_cols=33 Identities=9% Similarity=0.166 Sum_probs=27.9
Q ss_pred HHhhcCChHHHHHHHHHHHHhcCChhhHHhhhh
Q 004480 80 KLAKDGRLEEFAMIVESVVVSEGNVSKFASMLS 112 (750)
Q Consensus 80 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~ 112 (750)
.+.+.|.-.+|-.+|.+|+..|-.|+.|+.++.
T Consensus 104 tlR~ygsk~DaY~VF~kML~~G~pPddW~~Ll~ 136 (140)
T PF11663_consen 104 TLRAYGSKTDAYAVFRKMLERGNPPDDWDALLK 136 (140)
T ss_pred chhhhccCCcHHHHHHHHHhCCCCCccHHHHHH
Confidence 445568899999999999999999999887554
No 429
>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain. These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....
Probab=29.20 E-value=82 Score=24.10 Aligned_cols=80 Identities=19% Similarity=0.218 Sum_probs=36.9
Q ss_pred HHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH---HHHHHHHHHHhcCCH
Q 004480 558 CGGSGNVEGALQILKIMREDGMSPDVVAYTTAIKVCVRSKRLKQAFSLFEEMKHYQIQPNLV---TYITLLRARSRYGSL 634 (750)
Q Consensus 558 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~---t~~~li~~~~~~g~~ 634 (750)
.++.|+++-...+++ .+...+. -+..+...+..|+. ++++.+.+.|..++.. -++.|..+ +..|+
T Consensus 4 A~~~~~~~~~~~ll~----~~~~~~~--~~~~l~~A~~~~~~----~~~~~Ll~~g~~~~~~~~~g~t~L~~A-~~~~~- 71 (89)
T PF12796_consen 4 AAQNGNLEILKFLLE----KGADINL--GNTALHYAAENGNL----EIVKLLLENGADINSQDKNGNTALHYA-AENGN- 71 (89)
T ss_dssp HHHTTTHHHHHHHHH----TTSTTTS--SSBHHHHHHHTTTH----HHHHHHHHTTTCTT-BSTTSSBHHHHH-HHTTH-
T ss_pred HHHcCCHHHHHHHHH----CcCCCCC--CCCHHHHHHHcCCH----HHHHHHHHhcccccccCCCCCCHHHHH-HHcCC-
Confidence 345555544444433 3333332 11233444456664 4445555566666543 33444443 33444
Q ss_pred HHHHHHHHHHHHHHHcCCCCC
Q 004480 635 HEVQQCLAVYQDMWKAGYKAN 655 (750)
Q Consensus 635 ~~~~~a~~~~~~m~~~g~~p~ 655 (750)
.++++-+.+.|..++
T Consensus 72 ------~~~~~~Ll~~g~~~~ 86 (89)
T PF12796_consen 72 ------LEIVKLLLEHGADVN 86 (89)
T ss_dssp ------HHHHHHHHHTTT-TT
T ss_pred ------HHHHHHHHHcCCCCC
Confidence 235556667777665
No 430
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=28.55 E-value=8.1e+02 Score=26.79 Aligned_cols=143 Identities=10% Similarity=0.006 Sum_probs=82.7
Q ss_pred hhhcCchhHHHHHHHHHHhcCCCcccc-----ccchhhhhhHHHHHHhhccCcHHHHHHHHHHH-------HhCCCCCcc
Q 004480 123 SIREGRIDCVVGVLKKLNELGVAPLEL-----FDGSGFKLLKNECQRLLDSGEVEMFVGLMEVL-------EEFRLPVKE 190 (750)
Q Consensus 123 ~~~~g~~~~A~~~l~~~~~~~~~p~~~-----~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~-------~~~~~~~~~ 190 (750)
+-+...|.+|...|.-+... ..|+.. ..+..++.|+..+.....+|+.+-|.+++++. ....+.|..
T Consensus 248 ~~hs~sYeqaq~~F~~av~~-~d~n~v~~lL~ssPYHvdsLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~s 326 (665)
T KOG2422|consen 248 FEHSNSYEQAQRDFYLAVIV-HDPNNVLILLISSPYHVDSLLQVADIFRFQGDREMAADLIERGLYVFDRALHPNFIPFS 326 (665)
T ss_pred eecchHHHHHHHHHHHHHhh-cCCcceeeeeccCCcchhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhcccccccc
Confidence 34667788899998877764 344432 23345667776666555577777666655543 332222211
Q ss_pred cccHHHHHHHHHcCCChHHHHHHhhhCCCCcch---HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 004480 191 LDEEFRIVQLCVNKPDVNLAIRYACIVPRADIL---FCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCG 267 (750)
Q Consensus 191 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~---~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~ 267 (750)
.. ++ .+ -..|.+... ...-+..+.++|.+..|.++-.-+.+..+.-|....-.+|+.|+
T Consensus 327 g~---------cR---L~------y~~~eNR~FyL~l~r~m~~l~~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~A 388 (665)
T KOG2422|consen 327 GN---------CR---LP------YIYPENRQFYLALFRYMQSLAQRGCWRTALEWCKLLLSLDPSEDPLGILYLIDIYA 388 (665)
T ss_pred cc---------cc---Cc------ccchhhHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCcCCchhHHHHHHHHH
Confidence 10 00 00 000122222 23346677788888888888887777655446667777777654
Q ss_pred -hcCCHHHHHHHHHHHHh
Q 004480 268 -ICGDYMKSRAIYEDLRS 284 (750)
Q Consensus 268 -~~g~~~~A~~~~~~m~~ 284 (750)
+..+|+-.+++++....
T Consensus 389 LrareYqwiI~~~~~~e~ 406 (665)
T KOG2422|consen 389 LRAREYQWIIELSNEPEN 406 (665)
T ss_pred HHHHhHHHHHHHHHHHHh
Confidence 45677777777777643
No 431
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=28.16 E-value=2.9e+02 Score=21.47 Aligned_cols=61 Identities=15% Similarity=0.063 Sum_probs=27.2
Q ss_pred HHHHHHHHHhCCCCCcccccHHHHHHHHHcCCChHHHHHHhhhCCCCcchHHHHHHHHHhcCC
Q 004480 174 FVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRADILFCNFVREFGKKRD 236 (750)
Q Consensus 174 A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~l~~~~~~~g~ 236 (750)
+-++++.+.+.++...+. ...+-.+-...|+.+.|.++...++..+..|..++.++...|.
T Consensus 21 ~~~v~d~ll~~~ilT~~d--~e~I~aa~~~~g~~~~ar~LL~~L~rg~~aF~~Fl~aLreT~~ 81 (88)
T cd08819 21 TRDVCDKCLEQGLLTEED--RNRIEAATENHGNESGARELLKRIVQKEGWFSKFLQALRETEH 81 (88)
T ss_pred HHHHHHHHHhcCCCCHHH--HHHHHHhccccCcHHHHHHHHHHhccCCcHHHHHHHHHHHcCc
Confidence 445666666666443221 1111111113345555555555554444445555555544444
No 432
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=27.38 E-value=3.4e+02 Score=22.07 Aligned_cols=27 Identities=11% Similarity=0.290 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 004480 585 AYTTAIKVCVRSKRLKQAFSLFEEMKH 611 (750)
Q Consensus 585 ~~~~li~~~~~~g~~~~A~~~~~~m~~ 611 (750)
-|..|+.-|...|..++|.+++.+..+
T Consensus 41 ~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 41 KYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 377788888888888888888887765
No 433
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=27.21 E-value=3.3e+02 Score=26.16 Aligned_cols=25 Identities=4% Similarity=-0.138 Sum_probs=18.8
Q ss_pred HHHHHHhhcCChHHHHHHHHHHHHh
Q 004480 76 DMASKLAKDGRLEEFAMIVESVVVS 100 (750)
Q Consensus 76 ~l~~~~~~~g~~~~A~~~~~~~~~~ 100 (750)
.++..+...|+..+|+.-|+.-+..
T Consensus 15 ki~rl~l~~~~~~~Av~q~~~H~~~ 39 (247)
T PF11817_consen 15 KICRLYLWLNQPTEAVRQFRAHIDR 39 (247)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHH
Confidence 4567778888888888888776654
No 434
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=26.52 E-value=1.4e+02 Score=18.87 Aligned_cols=29 Identities=14% Similarity=0.086 Sum_probs=25.0
Q ss_pred hhHHHHHHHHhhcCChHHHHHHHHHHHHh
Q 004480 72 DYYADMASKLAKDGRLEEFAMIVESVVVS 100 (750)
Q Consensus 72 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 100 (750)
..|..|++.-..+++|++|..=|.+++..
T Consensus 2 dv~~~Lgeisle~e~f~qA~~D~~~aL~i 30 (38)
T PF10516_consen 2 DVYDLLGEISLENENFEQAIEDYEKALEI 30 (38)
T ss_pred cHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 46778899999999999999999888765
No 435
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=26.30 E-value=3.4e+02 Score=28.33 Aligned_cols=69 Identities=13% Similarity=0.028 Sum_probs=41.4
Q ss_pred hhHHHHHHHHhhcCChHHHHHHHHHHH-----HhcCChhhHHhhhhHHHHHHHHHhhhhcCchhHHHHHHHHHH
Q 004480 72 DYYADMASKLAKDGRLEEFAMIVESVV-----VSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLN 140 (750)
Q Consensus 72 ~~~~~l~~~~~~~g~~~~A~~~~~~~~-----~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~ 140 (750)
......+..+....+..+-++...... ..+.........+.--.+..+++.++-.|++..|+++++.+.
T Consensus 76 ~~VLnvL~sLv~kS~I~e~l~~~~~~~~~~~~~~~~g~~~l~~~LGYFSligLlRvh~LLGDY~~Alk~l~~id 149 (404)
T PF10255_consen 76 YSVLNVLYSLVDKSQINEQLEAEKRGEDPDEVAGEYGSSPLYKMLGYFSLIGLLRVHCLLGDYYQALKVLENID 149 (404)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHhhccCCchhhhcccccccHHHHhhHHHHHHHHHHHHhccCHHHHHHHhhccC
Confidence 333444555666666666555444411 111122333444555566788899999999999999987554
No 436
>TIGR01503 MthylAspMut_E methylaspartate mutase, E subunit. This model represents the E (epsilon) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=26.29 E-value=8e+02 Score=26.02 Aligned_cols=167 Identities=12% Similarity=0.088 Sum_probs=92.3
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC------CCC---ccHHHHHHHHHhhc---
Q 004480 235 RDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQ------NVT---LNIYVFNSLMNVNA--- 302 (750)
Q Consensus 235 g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------g~~---~~~~~~~~ll~~~~--- 302 (750)
+.+++-+++++.+.+.|- +| ....-|+.|.+.+++++|...+++-.+. |.+ -...+..-++....
T Consensus 68 ~~~~e~i~lL~~l~~~g~-ad--~lp~TIDSyTR~n~y~~A~~~l~~s~~~~~s~LNGfP~VnhGv~~~R~l~~~v~~Pv 144 (480)
T TIGR01503 68 ALLDEHIELLRTLQEEGG-AD--FLPSTIDAYTRQNRYDEAAVGIKESIKAGRSLLNGFPGVNHGVKGCRKVLEAVNLPL 144 (480)
T ss_pred CcHHHHHHHHHHHHHccC-CC--ccceeeecccccccHHHHHHHHHhhhhcCcccccCCCcccccHHHHHHHHHhCCCCe
Confidence 467788888888877642 23 4446678899999999999999887663 322 12344555555422
Q ss_pred ---CChHHHHHHHHHHHHcCCCCC---HhhHHHHHHHHHHcCChHHHHHHHHHHHHhh----hcCCCccCHHHHHHHHHH
Q 004480 303 ---HDLKFTLEVYKNMQKLGVMAD---MASYNILLKACCLAGNTVLAQEIYGEVKHLE----AKGVLKLDVFTYSTIVKV 372 (750)
Q Consensus 303 ---~~~~~a~~~~~~m~~~g~~~~---~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~----~~g~~~~~~~~~~~li~~ 372 (750)
.--.++..+++-+...|+... ..+||. -|.+.=-++++...|+.+.++. +.| +..|..+|..|...
T Consensus 145 QvRHGtpDarlL~e~~~a~G~~a~EGG~ISYnl---PYsK~vpLe~si~~WqyvdRL~g~y~e~g-v~InrE~FGpLtgt 220 (480)
T TIGR01503 145 QIRHGTPDARLLAEIILAGGFTSFEGGGISYNI---PYAKNVTLEKSLEDWQYCDRLVGFYEEQG-VHINREPFGPLTGT 220 (480)
T ss_pred eccCCCCcHHHHHHHHHHcCCCccCCCcceecc---ccCCCCCHHHHHHHHHHHHHHHHHHHhcC-ceeccccccCCCCC
Confidence 133457777888877775433 455553 3444445666666655443321 123 45555555543322
Q ss_pred HHhccCHHHHHHHHHHHH--HCCCCCCHHHHHHHHHHHHhcCCHHH
Q 004480 373 FADAKWWQMALKVKEDML--SAGVTPNTITWSSLINACANAGLVEQ 416 (750)
Q Consensus 373 ~~~~g~~~~a~~~~~~m~--~~g~~p~~~~~~~li~~~~~~g~~~~ 416 (750)
++- --..-|..+++-+. +.|++- +--+|.+.|+..+
T Consensus 221 LvP-Psisiav~ilE~Lla~eqGVks-------isvgy~Q~Gn~~Q 258 (480)
T TIGR01503 221 LVP-PSISNAIGIIEGLLAAEQGVKN-------ITVGYGQVGNLTQ 258 (480)
T ss_pred ccC-hHHHHHHHHHHHHHHHHcCCeE-------EEeccccCCChHH
Confidence 211 11334555555554 345442 1224556666554
No 437
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=26.10 E-value=4e+02 Score=22.40 Aligned_cols=86 Identities=8% Similarity=-0.106 Sum_probs=44.9
Q ss_pred HHhhhhcCchhHHHHHHHHHHhcCCCcc--ccccchhhhhhHHHHHHhhccCcHHHHHHHHHHHHhCCCCCcccccHHHH
Q 004480 120 IVKSIREGRIDCVVGVLKKLNELGVAPL--ELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRI 197 (750)
Q Consensus 120 ~~~~~~~g~~~~A~~~l~~~~~~~~~p~--~~~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l 197 (750)
-..+-..+.-.....++++..+. ...+ -..+.. +++.|..+++.-. ++.++|+.|...++...-...|..-
T Consensus 33 ~~~~p~~~~~~~L~~lLer~~~~-f~~~~~Y~nD~R----ylkiWi~ya~~~~--~~~~if~~l~~~~IG~~~A~fY~~w 105 (126)
T PF08311_consen 33 EENYPSGGKQSGLLELLERCIRK-FKDDERYKNDER----YLKIWIKYADLSS--DPREIFKFLYSKGIGTKLALFYEEW 105 (126)
T ss_dssp HHHCTTCCCCHHHHHHHHHHHHH-HTTSGGGTT-HH----HHHHHHHHHTTBS--HHHHHHHHHHHHTTSTTBHHHHHHH
T ss_pred HHHCCCCCchhHHHHHHHHHHHH-HhhhHhhcCCHH----HHHHHHHHHHHcc--CHHHHHHHHHHcCccHHHHHHHHHH
Confidence 33344445666667777777664 2221 112222 4555555654333 8899999998888765444333333
Q ss_pred HHHHHcCCChHHHHH
Q 004480 198 VQLCVNKPDVNLAIR 212 (750)
Q Consensus 198 ~~~~~~~~~~~~A~~ 212 (750)
...+...|++.+|.+
T Consensus 106 A~~le~~~~~~~A~~ 120 (126)
T PF08311_consen 106 AEFLEKRGNFKKADE 120 (126)
T ss_dssp HHHHHHTT-HHHHHH
T ss_pred HHHHHHcCCHHHHHH
Confidence 333333333333333
No 438
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=25.00 E-value=3.8e+02 Score=21.81 Aligned_cols=16 Identities=13% Similarity=0.181 Sum_probs=6.5
Q ss_pred hcCCHHHHHHHHHHHH
Q 004480 410 NAGLVEQAMHLFEEML 425 (750)
Q Consensus 410 ~~g~~~~a~~~~~~m~ 425 (750)
+.|-.+++...+.++.
T Consensus 81 klGL~~~~e~~l~rla 96 (116)
T PF09477_consen 81 KLGLASALESRLTRLA 96 (116)
T ss_dssp HCT-HHHHHHHHHHHC
T ss_pred hhccHHHHHHHHHHHH
Confidence 4444444444444443
No 439
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=24.83 E-value=9.3e+02 Score=26.26 Aligned_cols=76 Identities=12% Similarity=0.176 Sum_probs=47.8
Q ss_pred HHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCC---C----------CCCHHHHHHHHHHHHHcCCHHHHHHH
Q 004480 539 MRTVGLSPNHISWTILIDACGGSGNVEGALQILKIMREDG---M----------SPDVVAYTTAIKVCVRSKRLKQAFSL 605 (750)
Q Consensus 539 m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g---~----------~p~~~~~~~li~~~~~~g~~~~A~~~ 605 (750)
+.+.|+..+......++.. ..|++..|..++++....| + .++......++.++. .|+.+++.++
T Consensus 191 l~~egi~~~~~al~~ia~~--s~GslR~al~lLdq~ia~~~~~It~~~V~~~lg~~~~~~i~~ll~al~-~~d~~~~l~~ 267 (509)
T PRK14958 191 LKEENVEFENAALDLLARA--ANGSVRDALSLLDQSIAYGNGKVLIADVKTMLGTIEPLLLFDILEALA-AKAGDRLLGC 267 (509)
T ss_pred HHHcCCCCCHHHHHHHHHH--cCCcHHHHHHHHHHHHhcCCCCcCHHHHHHHHCCCCHHHHHHHHHHHH-cCCHHHHHHH
Confidence 3445666666665555544 3577888888887766543 1 123333444555544 4788888888
Q ss_pred HHHHHHCCCCCC
Q 004480 606 FEEMKHYQIQPN 617 (750)
Q Consensus 606 ~~~m~~~g~~p~ 617 (750)
+++|.+.|..|.
T Consensus 268 ~~~l~~~g~~~~ 279 (509)
T PRK14958 268 VTRLVEQGVDFS 279 (509)
T ss_pred HHHHHHcCCCHH
Confidence 888888887765
No 440
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=24.43 E-value=3.1e+02 Score=23.78 Aligned_cols=65 Identities=18% Similarity=0.100 Sum_probs=45.0
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCh
Q 004480 384 KVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQF 449 (750)
Q Consensus 384 ~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~ 449 (750)
++...+.+.|.+++.. -..++..+.+.++.-.|.++++++.+.+...+..|....++.+...|-+
T Consensus 7 ~~~~~lk~~glr~T~q-R~~vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e~Glv 71 (145)
T COG0735 7 DAIERLKEAGLRLTPQ-RLAVLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLEEAGLV 71 (145)
T ss_pred HHHHHHHHcCCCcCHH-HHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHHCCCE
Confidence 3445556677765543 4567777787777788999999999887666666666666666666543
No 441
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=24.21 E-value=3.9e+02 Score=21.71 Aligned_cols=26 Identities=19% Similarity=0.500 Sum_probs=21.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004480 401 WSSLINACANAGLVEQAMHLFEEMLQ 426 (750)
Q Consensus 401 ~~~li~~~~~~g~~~~a~~~~~~m~~ 426 (750)
|..|+..|...|..++|++++.++.+
T Consensus 42 ~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 42 YQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred HHHHHHHHHccCccHHHHHHHHHHhc
Confidence 77888888888888888888888776
No 442
>PF15297 CKAP2_C: Cytoskeleton-associated protein 2 C-terminus
Probab=23.86 E-value=7.7e+02 Score=25.00 Aligned_cols=64 Identities=17% Similarity=0.173 Sum_probs=49.5
Q ss_pred HHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 004480 564 VEGALQILKIMREDGMSPDV----VAYTTAIKVCVRSKRLKQAFSLFEEMKHYQIQPNLVTYITLLRARS 629 (750)
Q Consensus 564 ~~~A~~~~~~m~~~g~~p~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~ 629 (750)
.++...+++.++.. -|+. .-|-++.....+.|.++.++.+|++.+..|..|-...-..+++.+-
T Consensus 119 ~eei~~~L~~li~~--IP~A~K~aKYWIC~Arl~~~~~~~e~vi~iyEeAi~agAqPieElR~~l~diL~ 186 (353)
T PF15297_consen 119 KEEILATLSDLIKN--IPDAKKLAKYWICLARLEPRTGPIEDVIAIYEEAILAGAQPIEELRHVLVDILK 186 (353)
T ss_pred HHHHHHHHHHHHhc--CchHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHH
Confidence 35677777777764 5554 3577888888889999999999999999999988777777777755
No 443
>TIGR01228 hutU urocanate hydratase. This model represents the second of four enzymes involved in the degradation of histidine to glutamate.
Probab=23.79 E-value=5.6e+02 Score=27.27 Aligned_cols=181 Identities=12% Similarity=0.076 Sum_probs=0.0
Q ss_pred cCCHHHHHHHHHHHHhCCCCccHHHHHHHHHhhcCChHHHHHHHHHHHHcCCCCCHhh----HHHHHHHHHHcC-ChHHH
Q 004480 269 CGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKFTLEVYKNMQKLGVMADMAS----YNILLKACCLAG-NTVLA 343 (750)
Q Consensus 269 ~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~a~~~~~~m~~~g~~~~~~~----~~~ll~~~~~~g-~~~~A 343 (750)
..++++|++..++.++.+-..+ .+-.-.+.++|.++.++|+.||..| ....+.+|+-.| .++++
T Consensus 207 ~~~ldeal~~~~~a~~~~~~~S-----------Ig~~GNaadv~~~l~~r~i~pDlvtDQTSaHdp~~GY~P~g~t~ee~ 275 (545)
T TIGR01228 207 TDSLDEALARAEEAKAEGKPIS-----------IGLLGNAAEVLPELLKRGVVPDVVTDQTSAHDPLNGYIPEGYTVEDA 275 (545)
T ss_pred cCCHHHHHHHHHHHHHcCCceE-----------EEeeccHHHHHHHHHHcCCCCCCcCCCCcccCcccccCCCCCCHHHH
Q ss_pred HHHHHHHHHhhhcCCCccCHHHHHHHHHHHHhccC--HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh-----------
Q 004480 344 QEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKW--WQMALKVKEDMLSAGVTPNTITWSSLINACAN----------- 410 (750)
Q Consensus 344 ~~~~~~~~~~~~~g~~~~~~~~~~~li~~~~~~g~--~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~----------- 410 (750)
.++..+=++.-..- +..+..-.-..|..+.+.|- +|-.-.+..+..+.|+. +.+.|-..+..|.+
T Consensus 276 ~~lr~~dp~~~~~~-~~~Sm~rhv~Am~~~~~~Ga~~fDYGN~~r~~a~~aG~~-~aF~~PgfV~~~irplF~~G~GPFR 353 (545)
T TIGR01228 276 DKLRQEEPEAYVKA-AKQSMAKHVRAMLAFQKQGSVTFDYGNNIRQVAKEEGVE-DAFDFPGFVPAYIRPLFCRGKGPFR 353 (545)
T ss_pred HHHHHhCHHHHHHH-HHHHHHHHHHHHHHHHHCCCeeeeccHHHHHHHHHcCcc-ccCCCCCchhhhcchhhhCcCCCce
Q ss_pred ----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH--------------HHHhCChHHHHHHHHHHhhcc
Q 004480 411 ----AGLVEQAMHLFEEMLQAGCEPNSQCCNILLQA--------------CVEACQFDRAFRLFRSWTLSK 463 (750)
Q Consensus 411 ----~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~--------------~~~~g~~~~A~~~~~~~~~~~ 463 (750)
+|+.+.-.+.=+.+.+. ++++...++-+=.+ |.-.|.-.++-..|++|..++
T Consensus 354 WvaLSGdpeDi~~TD~~~~e~-~~~~~~~~~WI~~A~e~~~fqGlpARI~wlg~~eR~~~~l~fNe~V~~G 423 (545)
T TIGR01228 354 WVALSGDPADIYRTDAAVKEL-FPEDAHLHRWIDMAQERVSFQGLPARICWLGYGERAKLGLAINEMVRSG 423 (545)
T ss_pred eEecCCCHHHHHHHHHHHHHH-CCCcHHHHHHHHHHHhcCcccCCchhhhhcCccHHHHHHHHHHHHHHcC
No 444
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=23.64 E-value=1.9e+02 Score=20.99 Aligned_cols=49 Identities=8% Similarity=0.152 Sum_probs=24.3
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 004480 581 PDVVAYTTAIKVCVRSKRLKQAFSLFEEMKHYQIQPNLVTYITLLRARSR 630 (750)
Q Consensus 581 p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~ 630 (750)
|....++.++..+++..-.++++..+.++.+.|. .+..+|---++.++|
T Consensus 6 ~~~~l~~Ql~el~Aed~AieDtiy~L~~al~~g~-I~~d~~lK~vR~LaR 54 (65)
T PF09454_consen 6 AEDPLSNQLYELVAEDHAIEDTIYYLDRALQRGS-IDLDTFLKQVRSLAR 54 (65)
T ss_dssp -SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS-S-HHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHH
Confidence 4444555555555555555555555555555543 344444444444433
No 445
>PRK10304 ferritin; Provisional
Probab=23.64 E-value=5.3e+02 Score=22.96 Aligned_cols=105 Identities=10% Similarity=0.139 Sum_probs=46.9
Q ss_pred hHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHHcCChHHHHHHHHHHHHhhhcCCCccCHHHHHHHHHHHHhccCHHHHHH
Q 004480 305 LKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALK 384 (750)
Q Consensus 305 ~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~g~~~~~~~~~~~li~~~~~~g~~~~a~~ 384 (750)
.+.|.++++.+...|..|.......- ...+....++|+...+.. .--...++.++..+.+.+|+.. ..
T Consensus 51 ~~HA~kl~~~i~~rgg~~~~~~i~~p------~~~~~s~~e~~~~~l~~E-----~~vt~~i~~l~~~A~~~~D~~t-~~ 118 (165)
T PRK10304 51 MTHMQRLFDYLTDTGNLPRINTVESP------FAEYSSLDELFQETYKHE-----QLITQKINELAHAAMTNQDYPT-FN 118 (165)
T ss_pred HHHHHHHHHHHHHcCCCeeeCCCCCC------ccccCCHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHcCCHhH-HH
Confidence 35567777777776655543221100 112333444455444421 1233456666666666666532 23
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 004480 385 VKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFE 422 (750)
Q Consensus 385 ~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~ 422 (750)
++++++...++ .......++.-....|+-..+.-.++
T Consensus 119 fl~~fl~EQve-Ee~~~~~l~~~l~~~~~~g~~~y~~D 155 (165)
T PRK10304 119 FLQWYVSEQHE-EEKLFKSIIDKLSLAGKSGEGLYFID 155 (165)
T ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHhhCCCcchHHHHh
Confidence 33444432221 23344445444444444333333333
No 446
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=23.48 E-value=8.8e+02 Score=27.60 Aligned_cols=75 Identities=13% Similarity=0.114 Sum_probs=43.6
Q ss_pred HHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCC---CC----------CCHHHHHHHHHHHHHcCCHHHHHHHH
Q 004480 540 RTVGLSPNHISWTILIDACGGSGNVEGALQILKIMREDG---MS----------PDVVAYTTAIKVCVRSKRLKQAFSLF 606 (750)
Q Consensus 540 ~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g---~~----------p~~~~~~~li~~~~~~g~~~~A~~~~ 606 (750)
.+.|+..+......++... .|++..|..+++++...| +. ++......++.++. .++...+++++
T Consensus 192 ~kEgi~id~eAL~~Ia~~A--~GslRdAlnLLDqaia~g~g~It~e~V~~lLG~~d~~~If~LldAL~-~~d~~~al~~l 268 (709)
T PRK08691 192 DSEKIAYEPPALQLLGRAA--AGSMRDALSLLDQAIALGSGKVAENDVRQMIGAVDKQYLYELLTGII-NQDGAALLAKA 268 (709)
T ss_pred HHcCCCcCHHHHHHHHHHh--CCCHHHHHHHHHHHHHhcCCCcCHHHHHHHHcccCHHHHHHHHHHHH-cCCHHHHHHHH
Confidence 3456666666666666543 588888888887766532 11 12223344444444 36667777777
Q ss_pred HHHHHCCCCCC
Q 004480 607 EEMKHYQIQPN 617 (750)
Q Consensus 607 ~~m~~~g~~p~ 617 (750)
++|...|+.+.
T Consensus 269 ~~L~~~G~d~~ 279 (709)
T PRK08691 269 QEMAACAVGFD 279 (709)
T ss_pred HHHHHhCCCHH
Confidence 77776665443
No 447
>PRK13342 recombination factor protein RarA; Reviewed
Probab=23.23 E-value=8.9e+02 Score=25.48 Aligned_cols=66 Identities=21% Similarity=0.203 Sum_probs=40.0
Q ss_pred HHHHHHHHHh---ccCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC-----HHHHHHHHHHHHHcCCCC
Q 004480 366 YSTIVKVFAD---AKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGL-----VEQAMHLFEEMLQAGCEP 431 (750)
Q Consensus 366 ~~~li~~~~~---~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~-----~~~a~~~~~~m~~~~~~p 431 (750)
+..++.++.+ ..+.+.|+..+..|++.|..|....-..++.++...|. ..-|...++....-|.+-
T Consensus 230 ~~~~isa~~ks~rgsd~~aal~~l~~~l~~G~d~~~i~rrl~~~a~edig~a~~~~~~~~~~~~~~~~~~g~pe 303 (413)
T PRK13342 230 HYDLISALHKSIRGSDPDAALYYLARMLEAGEDPLFIARRLVIIASEDIGLADPNALQVAVAAADAVERIGMPE 303 (413)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhhcccCHHHHHHHHHHHHHHHHhCCcH
Confidence 3344444443 47788888888888888877766665555555555443 333455555555556443
No 448
>PF02607 B12-binding_2: B12 binding domain; InterPro: IPR003759 Cobalamin-dependent methionine synthase (2.1.1.13 from EC) is a large modular protein that catalyses methyl transfer from methyltetrahydrofolate (CH3-H4folate) to homocysteine. During the catalytic cycle, it supports three distinct methyl transfer reactions, each involving the cobalamin (vitamin B12) cofactor and a substrate bound to its own functional unit []. The cobalamin cofactor plays an essential role in this reaction, accepting the methyl group from CH3-H4folate to form methylcob(III)alamin, and in turn donating the methyl group to homocysteine to generate methionine and cob(I)alamin. Methionine synthase is a large enzyme composed of four structurally and functionally distinct modules: the first two modules bind homocysteine and CH3-H4folate, the third module binds the cobalamin cofactor and the C-terminal module binds S-adenosylmethionine. The cobalamin-binding module is composed of two structurally distinct domains: a 4-helical bundle cap domain (residues 651-740 in the Escherichia coli enzyme) and an alpha/beta B12-binding domain (residues 741-896) (IPR006158 from INTERPRO). The 4-helical bundle forms a cap over the alpha/beta domain, which acts to shield the methyl ligand of cobalamin from solvent []. Furthermore, in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO). The alpha/beta domain is a common cobalamin-binding motif, whereas the 4-helical bundle domain with its methyl cap is a distinctive feature of methionine synthases. This entry represents the 4-helical bundle cap domain. This domain is also present in other shorter proteins that bind to B12, and is always found N terminus to the alpha/beta B12-binding domain.; GO: 0008705 methionine synthase activity, 0031419 cobalamin binding, 0046872 metal ion binding, 0009086 methionine biosynthetic process; PDB: 3EZX_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 2I2X_P.
Probab=22.83 E-value=1.7e+02 Score=21.86 Aligned_cols=35 Identities=20% Similarity=0.132 Sum_probs=19.7
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 004480 596 SKRLKQAFSLFEEMKHYQIQPNLVTYITLLRARSR 630 (750)
Q Consensus 596 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~ 630 (750)
.|+.+.+.+++++..+.|..|.......+..+..+
T Consensus 14 ~~d~~~~~~~~~~~l~~g~~~~~i~~~~l~p~m~~ 48 (79)
T PF02607_consen 14 AGDEEEAEALLEEALAQGYPPEDIIEEILMPAMEE 48 (79)
T ss_dssp TT-CCHHHHHHHHHHHCSSSTTHHHHHTHHHHHHH
T ss_pred hCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 45666666666666665656555555555555433
No 449
>PF12926 MOZART2: Mitotic-spindle organizing gamma-tubulin ring associated; InterPro: IPR024332 The MOZART2 family of proteins (also known as FAM128 and Mitotic-spindle organizing protein 2) operate as part of the gamma-tubulin ring complex, gamma-TuRC, one of the complexes necessary for chromosome segregation. This complex is located at centrosomes and mediates the formation of bipolar spindles in mitosis; it consists of six subunits. However, unlike the other four known subunits, the MOZART proteins, both 1 and 2, do not carry the conserved 'Spc97-Spc98' GCP domain, so the TUBGCP nomenclature cannot be used for it. The exact function of MOZART2 is not clear [].
Probab=22.61 E-value=3.7e+02 Score=20.81 Aligned_cols=43 Identities=21% Similarity=0.269 Sum_probs=31.8
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHhCChHHHHHHHHHHhh
Q 004480 419 HLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTL 461 (750)
Q Consensus 419 ~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~ 461 (750)
++|+-....|+..|...|.++++...-+-.++...++++.|-.
T Consensus 29 EL~ELa~~AGv~~dp~VFriildLL~~nVsP~AI~qmLK~m~s 71 (88)
T PF12926_consen 29 ELYELAQLAGVPMDPEVFRIILDLLRLNVSPDAIFQMLKSMCS 71 (88)
T ss_pred HHHHHHHHhCCCcChHHHHHHHHHHHcCCCHHHHHHHHHHHHc
Confidence 6777777777777888888888777666677777777777654
No 450
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=22.61 E-value=8.2e+02 Score=27.12 Aligned_cols=94 Identities=10% Similarity=-0.033 Sum_probs=58.2
Q ss_pred HHHhhhhcCchhHHHHHHHHHHhcCCCccccccchhhhhhHHHHHHhhccCcHHHHHHHHHHHHhCCCCCcccccHHHHH
Q 004480 119 GIVKSIREGRIDCVVGVLKKLNELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIV 198 (750)
Q Consensus 119 ~~~~~~~~g~~~~A~~~l~~~~~~~~~p~~~~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~ 198 (750)
-.....+..+|..+.++|..-... +..|.. .-..-...-..|..|..-.+.+.|.+++.+..+.. |..+..-....
T Consensus 360 ~A~~~F~~~~Y~~s~~~y~~Sl~~-i~~D~~-~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d--~~~~l~q~~~~ 435 (872)
T KOG4814|consen 360 TAKKLFKMEKYVVSIRFYKLSLKD-IISDNY-SDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVD--RQSPLCQLLML 435 (872)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHh-ccchhh-hhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhc--cccHHHHHHHH
Confidence 344566889999999999887763 222222 11122222233445555778899999999887744 65555555556
Q ss_pred HHHHcCCChHHHHHHhhh
Q 004480 199 QLCVNKPDVNLAIRYACI 216 (750)
Q Consensus 199 ~~~~~~~~~~~A~~~~~~ 216 (750)
......+.-++|+.....
T Consensus 436 ~~~~~E~~Se~AL~~~~~ 453 (872)
T KOG4814|consen 436 QSFLAEDKSEEALTCLQK 453 (872)
T ss_pred HHHHHhcchHHHHHHHHH
Confidence 666667777777665433
No 451
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=22.54 E-value=4.5e+02 Score=23.46 Aligned_cols=59 Identities=8% Similarity=0.036 Sum_probs=28.9
Q ss_pred HHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCH
Q 004480 540 RTVGLSPNHISWTILIDACGGSGNVEGALQILKIMREDGMSPDVVAYTTAIKVCVRSKRL 599 (750)
Q Consensus 540 ~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~ 599 (750)
...|++++..-. .++..+...++.-.|.++++.+.+.+..++..|.---+..+...|-+
T Consensus 18 ~~~GlR~T~qR~-~IL~~l~~~~~hlSa~eI~~~L~~~~~~is~aTVYRtL~~L~e~Glv 76 (169)
T PRK11639 18 AQRNVRLTPQRL-EVLRLMSLQPGAISAYDLLDLLREAEPQAKPPTVYRALDFLLEQGFV 76 (169)
T ss_pred HHcCCCCCHHHH-HHHHHHHhcCCCCCHHHHHHHHHhhCCCCCcchHHHHHHHHHHCCCE
Confidence 344555444333 22233333344455666666666655555555544445555555543
No 452
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=22.49 E-value=5.2e+02 Score=27.02 Aligned_cols=27 Identities=11% Similarity=0.100 Sum_probs=21.8
Q ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHH
Q 004480 222 ILFCNFVREFGKKRDLVSALRAYDASK 248 (750)
Q Consensus 222 ~~~~~l~~~~~~~g~~~~A~~~~~~~~ 248 (750)
.++..++-+|.-.+++.+|.++|..+.
T Consensus 165 s~~YyvGFaylMlrRY~DAir~f~~iL 191 (404)
T PF10255_consen 165 STYYYVGFAYLMLRRYADAIRTFSQIL 191 (404)
T ss_pred ehHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566777788888899999999888765
No 453
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=22.47 E-value=1e+03 Score=26.76 Aligned_cols=75 Identities=12% Similarity=0.108 Sum_probs=42.1
Q ss_pred HHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCC-------------CCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 004480 540 RTVGLSPNHISWTILIDACGGSGNVEGALQILKIMREDGM-------------SPDVVAYTTAIKVCVRSKRLKQAFSLF 606 (750)
Q Consensus 540 ~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-------------~p~~~~~~~li~~~~~~g~~~~A~~~~ 606 (750)
.+.|+..+......++. ...|++..++.++++....|- .++......++.++. .|+...+++++
T Consensus 197 ~~egi~ie~~AL~~La~--~s~GslR~al~lLdq~ia~~~~~It~~~V~~~Lg~~~~~~i~~LldaL~-~~d~~~al~~l 273 (618)
T PRK14951 197 AAENVPAEPQALRLLAR--AARGSMRDALSLTDQAIAFGSGQLQEAAVRQMLGSVDRSHVFRLIDALA-QGDGRTVVETA 273 (618)
T ss_pred HHcCCCCCHHHHHHHHH--HcCCCHHHHHHHHHHHHHhcCCCcCHHHHHHHHcCCCHHHHHHHHHHHH-cCCHHHHHHHH
Confidence 34566666666655555 244777777777766543321 122333334444444 36677777777
Q ss_pred HHHHHCCCCCC
Q 004480 607 EEMKHYQIQPN 617 (750)
Q Consensus 607 ~~m~~~g~~p~ 617 (750)
++|.+.|..|.
T Consensus 274 ~~l~~~G~~~~ 284 (618)
T PRK14951 274 DELRLNGLSAA 284 (618)
T ss_pred HHHHHcCCCHH
Confidence 77776665543
No 454
>PF02847 MA3: MA3 domain; InterPro: IPR003891 This entry represents the MI domain (after MA-3 and eIF4G), it is a protein-protein interaction module of ~130 amino acids [, , ]. It appears in several translation factors and is found in: One copy in plant and animal eIF4G 1 and 2 (DAP-5/NAT1/p97) Two copies in the animal programmed cell death protein 4 (PDCD4) or MA-3 that is induced during programmed cell death and inhibits neoplastic transformation Four tandem-repeated copies in a group of uncharacterised plant proteins The MI domain consists of seven alpha-helices, which pack into a globular form. The packing arrangement consists of repeating pairs of antiparallel helices packed one upon the other such that a superhelical axis is generated perpendicular to the alpha-helical axes []. The MI domain has also been named MA3 domain.; PDB: 2ION_A 2IOL_B 2NSZ_A 3EIQ_C 2HM8_A 2KZT_B 2IOS_A 2RG8_B 2ZU6_E 3EIJ_A ....
Probab=22.39 E-value=2.6e+02 Score=22.62 Aligned_cols=22 Identities=27% Similarity=0.363 Sum_probs=13.2
Q ss_pred HHHHHHHcCCCHHHHHHHHHHH
Q 004480 553 ILIDACGGSGNVEGALQILKIM 574 (750)
Q Consensus 553 ~li~~~~~~g~~~~A~~~~~~m 574 (750)
.++..|...|+.++|...+.++
T Consensus 7 ~~l~ey~~~~d~~ea~~~l~el 28 (113)
T PF02847_consen 7 SILMEYFSSGDVDEAVECLKEL 28 (113)
T ss_dssp HHHHHHHHHT-HHHHHHHHHHT
T ss_pred HHHHHHhcCCCHHHHHHHHHHh
Confidence 3455566667777777766665
No 455
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=22.26 E-value=5.8e+02 Score=25.66 Aligned_cols=100 Identities=10% Similarity=0.044 Sum_probs=63.3
Q ss_pred hhhhHHHHHHHHhhcCChHHHHHHHHHHHHh-cCChhhHHhhhhHHHHHHHHHhhhhcCchhHHHHHHHHHHhcCCCccc
Q 004480 70 RNDYYADMASKLAKDGRLEEFAMIVESVVVS-EGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLE 148 (750)
Q Consensus 70 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~p~~ 148 (750)
....|..-+..|-+..+|..|...|...++. ..+|+-- ...+.+-..+-...|++..|+.=...++. +.|.
T Consensus 80 ~Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dln-----avLY~NRAAa~~~l~NyRs~l~Dcs~al~--~~P~- 151 (390)
T KOG0551|consen 80 QAENYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLN-----AVLYTNRAAAQLYLGNYRSALNDCSAALK--LKPT- 151 (390)
T ss_pred HHHHHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHH-----HHHHhhHHHHHHHHHHHHHHHHHHHHHHh--cCcc-
Confidence 4666777778888888888888888887665 4555522 22233333344467888888777777776 4553
Q ss_pred cccchhhhhhHHHHHHhhccCcHHHHHHHHHHHH
Q 004480 149 LFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLE 182 (750)
Q Consensus 149 ~~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~ 182 (750)
..-.+++.+..+....++++|....++..
T Consensus 152 -----h~Ka~~R~Akc~~eLe~~~~a~nw~ee~~ 180 (390)
T KOG0551|consen 152 -----HLKAYIRGAKCLLELERFAEAVNWCEEGL 180 (390)
T ss_pred -----hhhhhhhhhHHHHHHHHHHHHHHHHhhhh
Confidence 33455555555555566677776666543
No 456
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=22.25 E-value=1.3e+03 Score=27.06 Aligned_cols=209 Identities=13% Similarity=0.093 Sum_probs=0.0
Q ss_pred HHHHHHHHHhccCHHHHHHHHHHHHH---CCCCCCHHHHHHHHHHHHhcCCH--HHHHHHHHHHHHcCCCCCHHHHHH--
Q 004480 366 YSTIVKVFADAKWWQMALKVKEDMLS---AGVTPNTITWSSLINACANAGLV--EQAMHLFEEMLQAGCEPNSQCCNI-- 438 (750)
Q Consensus 366 ~~~li~~~~~~g~~~~a~~~~~~m~~---~g~~p~~~~~~~li~~~~~~g~~--~~a~~~~~~m~~~~~~p~~~~~~~-- 438 (750)
|..|+..|...|+.++|+++|.+... ....--...+--+++.+.+.+.. +-.+++-+...+..-.-....+..
T Consensus 507 y~~Li~LY~~kg~h~~AL~ll~~l~d~~~~~d~~~~~~~e~ii~YL~~l~~~~~~Li~~y~~wvl~~~p~~gi~Ift~~~ 586 (877)
T KOG2063|consen 507 YRELIELYATKGMHEKALQLLRDLVDEDSDTDSFQLDGLEKIIEYLKKLGAENLDLILEYADWVLNKNPEAGIQIFTSED 586 (877)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHhccccccccchhhhHHHHHHHHHHhcccchhHHHHHhhhhhccCchhheeeeeccC
Q ss_pred ----------HHHHHHHhCChHHHHHHHHHHhhcccccccCCCCCCchhhhhhhhhhhcccccCCCCccCCCcccccccc
Q 004480 439 ----------LLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKR 508 (750)
Q Consensus 439 ----------ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 508 (750)
.+-.|.+....+-+..+++.+....-
T Consensus 587 ~~~~~sis~~~Vl~~l~~~~~~l~I~YLE~li~~~~-------------------------------------------- 622 (877)
T KOG2063|consen 587 KQEAESISRDDVLNYLKSKEPKLLIPYLEHLISDNR-------------------------------------------- 622 (877)
T ss_pred hhhhccCCHHHHHHHhhhhCcchhHHHHHHHhHhcc--------------------------------------------
Q ss_pred CCCCccHHHHHHHHHHHHhcHH----------HHHHH--HHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 004480 509 FSFKPTTTTYNILMKACCTDYY----------RVKAL--MNEMRTVGLSPNHISWTILIDACGGSGNVEGALQILKIMRE 576 (750)
Q Consensus 509 ~~~~p~~~~~~~li~~~~~~~~----------~a~~l--~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 576 (750)
.++..-.+.++.-|+.... ++.+. -+.....--.-+.+.-..++.-+...+-+++..-++.+|.+
T Consensus 623 ---~~~~~lht~ll~ly~e~v~~~~~~~~kg~e~~E~~~rekl~~~l~~s~~Y~p~~~L~~~~~~~l~ee~aill~rl~k 699 (877)
T KOG2063|consen 623 ---LTSTLLHTVLLKLYLEKVLEQASTDGKGEEAPETTVREKLLDFLESSDLYDPQLLLERLNGDELYEERAILLGRLGK 699 (877)
T ss_pred ---ccchHHHHHHHHHHHHHHhhccCchhccccchhhhHHHHHHHHhhhhcccCcchhhhhccchhHHHHHHHHHhhhhh
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 004480 577 DGMSPDVVAYTTAIKVCVRSKRLKQAFSLFEEMKHYQIQPNLVTYITLLRARSR 630 (750)
Q Consensus 577 ~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~ 630 (750)
.......++.-+ ++++.|..+...--+ ...++...|..++..+..
T Consensus 700 -----he~aL~Iyv~~L---~d~~~A~~Yc~~~y~-~~~~~~~~y~~lL~~~l~ 744 (877)
T KOG2063|consen 700 -----HEEALHIYVHEL---DDIDAAESYCLPQYE-SDKTNKEIYLTLLRIYLN 744 (877)
T ss_pred -----HHHHHHHHHHHh---cchhHHHHHHHHhcc-CCCcccHHHHHHHHHHhc
No 457
>PRK12798 chemotaxis protein; Reviewed
Probab=22.05 E-value=9.2e+02 Score=25.21 Aligned_cols=15 Identities=20% Similarity=0.096 Sum_probs=7.2
Q ss_pred cCcHHHHHHHHHHHH
Q 004480 168 SGEVEMFVGLMEVLE 182 (750)
Q Consensus 168 ~g~~~~A~~~~~~~~ 182 (750)
.|+.++|.+.+..+.
T Consensus 125 ~Gr~~~a~~~La~i~ 139 (421)
T PRK12798 125 SGRGREARKLLAGVA 139 (421)
T ss_pred cCCHHHHHHHhhcCC
Confidence 355555555544443
No 458
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=21.80 E-value=2.8e+02 Score=20.11 Aligned_cols=50 Identities=10% Similarity=0.042 Sum_probs=28.1
Q ss_pred ccCHHHHHHHHHHHHhccCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 004480 360 KLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACAN 410 (750)
Q Consensus 360 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~ 410 (750)
.|....++.++..+++-.-.++++..+++....|. .+..+|.--++.+++
T Consensus 5 ~~~~~l~~Ql~el~Aed~AieDtiy~L~~al~~g~-I~~d~~lK~vR~LaR 54 (65)
T PF09454_consen 5 VAEDPLSNQLYELVAEDHAIEDTIYYLDRALQRGS-IDLDTFLKQVRSLAR 54 (65)
T ss_dssp E-SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS-S-HHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHH
Confidence 44555666666666666666666666666666654 245555554544444
No 459
>COG2178 Predicted RNA-binding protein of the translin family [Translation, ribosomal structure and biogenesis]
Probab=21.53 E-value=6.4e+02 Score=23.15 Aligned_cols=76 Identities=11% Similarity=0.014 Sum_probs=39.6
Q ss_pred HHHHHHHHHHHHcCCCCCHhhHHHHHHHHHHcCChHHHHHHHHHHHHhhhcCCCccCHHHHHHHHH-HHHhccC--HHHH
Q 004480 306 KFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVK-VFADAKW--WQMA 382 (750)
Q Consensus 306 ~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~g~~~~~~~~~~~li~-~~~~~g~--~~~a 382 (750)
++++++-+++.. ++...-.....|++++|..-++.+.+..+. ++.-...|..+.. +++..+. +-+|
T Consensus 20 EE~l~lsRei~r---------~s~~aI~~~H~~~~eeA~~~l~~a~~~v~~--Lk~~l~~~pel~~ag~~~~a~QEyvEA 88 (204)
T COG2178 20 EEALKLSREIVR---------LSGEAIFLLHRGDFEEAEKKLKKASEAVEK--LKRLLAGFPELYFAGFVTTALQEYVEA 88 (204)
T ss_pred HHHHHHHHHHHH---------HHHHHHHHHHhccHHHHHHHHHHHHHHHHH--HHHHHhhhHHHHHHHhhcchHHHHHHH
Confidence 445555555543 333333445667788777777766543211 2223334555554 5555543 5566
Q ss_pred HHHHHHHHHC
Q 004480 383 LKVKEDMLSA 392 (750)
Q Consensus 383 ~~~~~~m~~~ 392 (750)
..++..+...
T Consensus 89 ~~l~~~l~~~ 98 (204)
T COG2178 89 TLLYSILKDG 98 (204)
T ss_pred HHHHHHHhcC
Confidence 6666665544
No 460
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=21.18 E-value=5.9e+02 Score=25.29 Aligned_cols=71 Identities=13% Similarity=0.274 Sum_probs=52.9
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH----------hCChHHH
Q 004480 383 LKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVE----------ACQFDRA 452 (750)
Q Consensus 383 ~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~----------~g~~~~A 452 (750)
.++|+.|...++.|.-.+|..+.-.+.+.=.+..++.+|+.+.. |..-|..|+..||. .|++...
T Consensus 263 ~EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~s-----D~~rfd~Ll~iCcsmlil~Re~il~~DF~~n 337 (370)
T KOG4567|consen 263 EELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLLS-----DPQRFDFLLYICCSMLILVRERILEGDFTVN 337 (370)
T ss_pred HHHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHhc-----ChhhhHHHHHHHHHHHHHHHHHHHhcchHHH
Confidence 46788888888999988888888778888888999999998865 33336666666664 3666666
Q ss_pred HHHHHH
Q 004480 453 FRLFRS 458 (750)
Q Consensus 453 ~~~~~~ 458 (750)
.++++.
T Consensus 338 mkLLQ~ 343 (370)
T KOG4567|consen 338 MKLLQN 343 (370)
T ss_pred HHHHhc
Confidence 666654
No 461
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=21.13 E-value=5.1e+02 Score=23.15 Aligned_cols=38 Identities=16% Similarity=0.097 Sum_probs=19.1
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 004480 596 SKRLKQAFSLFEEMKHYQIQPNLVTYITLLRARSRYGS 633 (750)
Q Consensus 596 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~ 633 (750)
.++.-.|.++++.+.+.+..++..|..--|..+...|-
T Consensus 38 ~~~hlSa~eI~~~L~~~~~~is~aTVYRtL~~L~e~Gl 75 (169)
T PRK11639 38 QPGAISAYDLLDLLREAEPQAKPPTVYRALDFLLEQGF 75 (169)
T ss_pred cCCCCCHHHHHHHHHhhCCCCCcchHHHHHHHHHHCCC
Confidence 33444555555555555544455444444444444444
No 462
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=20.85 E-value=1.7e+02 Score=16.53 Aligned_cols=27 Identities=19% Similarity=0.116 Sum_probs=16.9
Q ss_pred CcHHHHHHHHHHHHhCCCCCcccccHHHH
Q 004480 169 GEVEMFVGLMEVLEEFRLPVKELDEEFRI 197 (750)
Q Consensus 169 g~~~~A~~~~~~~~~~~~~~~~~~~~~~l 197 (750)
|+.+.|..+|++++... |.....|...
T Consensus 1 ~~~~~~r~i~e~~l~~~--~~~~~~W~~y 27 (33)
T smart00386 1 GDIERARKIYERALEKF--PKSVELWLKY 27 (33)
T ss_pred CcHHHHHHHHHHHHHHC--CCChHHHHHH
Confidence 45677888888877644 4444444443
No 463
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=20.53 E-value=1.5e+02 Score=29.71 Aligned_cols=97 Identities=13% Similarity=0.043 Sum_probs=66.2
Q ss_pred HHcCCChHHHHHHhhhC----CCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHhcCCHHHH
Q 004480 201 CVNKPDVNLAIRYACIV----PRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMY-ICRTIIDVCGICGDYMKS 275 (750)
Q Consensus 201 ~~~~~~~~~A~~~~~~~----~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~li~~~~~~g~~~~A 275 (750)
....|.++.|+..|... |+....|..-.+++.+.++...|++=++...+. .||.. -|-.--.+..-.|+|++|
T Consensus 124 Aln~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ei--n~Dsa~~ykfrg~A~rllg~~e~a 201 (377)
T KOG1308|consen 124 ALNDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEI--NPDSAKGYKFRGYAERLLGNWEEA 201 (377)
T ss_pred HhcCcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhcc--CcccccccchhhHHHHHhhchHHH
Confidence 33567788888887653 444566667778888888999998888877763 34432 344344445566899999
Q ss_pred HHHHHHHHhCCCCccHHHHHHHHH
Q 004480 276 RAIYEDLRSQNVTLNIYVFNSLMN 299 (750)
Q Consensus 276 ~~~~~~m~~~g~~~~~~~~~~ll~ 299 (750)
-..|....+.++.+....|..-+.
T Consensus 202 a~dl~~a~kld~dE~~~a~lKeV~ 225 (377)
T KOG1308|consen 202 AHDLALACKLDYDEANSATLKEVF 225 (377)
T ss_pred HHHHHHHHhccccHHHHHHHHHhc
Confidence 999998888877666555544433
No 464
>PF12926 MOZART2: Mitotic-spindle organizing gamma-tubulin ring associated; InterPro: IPR024332 The MOZART2 family of proteins (also known as FAM128 and Mitotic-spindle organizing protein 2) operate as part of the gamma-tubulin ring complex, gamma-TuRC, one of the complexes necessary for chromosome segregation. This complex is located at centrosomes and mediates the formation of bipolar spindles in mitosis; it consists of six subunits. However, unlike the other four known subunits, the MOZART proteins, both 1 and 2, do not carry the conserved 'Spc97-Spc98' GCP domain, so the TUBGCP nomenclature cannot be used for it. The exact function of MOZART2 is not clear [].
Probab=20.50 E-value=4.1e+02 Score=20.57 Aligned_cols=63 Identities=19% Similarity=0.235 Sum_probs=40.5
Q ss_pred ccHHHHHHHHHHHHh-cHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 004480 513 PTTTTYNILMKACCT-DYYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQILKIMRE 576 (750)
Q Consensus 513 p~~~~~~~li~~~~~-~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 576 (750)
|....|...+....- ..++. ++|+-....|+.-|...|.++++...-+=-.+...++++.|..
T Consensus 8 ~~~~~~k~~~~rk~~Ls~eE~-EL~ELa~~AGv~~dp~VFriildLL~~nVsP~AI~qmLK~m~s 71 (88)
T PF12926_consen 8 PTAQVYKYSLRRKKVLSAEEV-ELYELAQLAGVPMDPEVFRIILDLLRLNVSPDAIFQMLKSMCS 71 (88)
T ss_pred ChHHHHHHHHHHHhccCHHHH-HHHHHHHHhCCCcChHHHHHHHHHHHcCCCHHHHHHHHHHHHc
Confidence 344445444443332 22333 7777777788888888888888777766677777777777764
No 465
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=20.41 E-value=1e+03 Score=26.09 Aligned_cols=101 Identities=18% Similarity=0.150 Sum_probs=64.5
Q ss_pred HcCChHHHHHHHHHHHHhhhcCCCccC--HHHHHHHHHHHHhccCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 004480 336 LAGNTVLAQEIYGEVKHLEAKGVLKLD--VFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGL 413 (750)
Q Consensus 336 ~~g~~~~A~~~~~~~~~~~~~g~~~~~--~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~ 413 (750)
-.|+...|...+..... ..|- -+..-.|...+.+.|...+|..++.+.+... .....++-.+.+++.-..+
T Consensus 619 ~~gn~~~a~~cl~~a~~------~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~-~sepl~~~~~g~~~l~l~~ 691 (886)
T KOG4507|consen 619 AVGNSTFAIACLQRALN------LAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAIN-SSEPLTFLSLGNAYLALKN 691 (886)
T ss_pred ecCCcHHHHHHHHHHhc------cChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhc-ccCchHHHhcchhHHHHhh
Confidence 45777777777665543 1221 1233445555666777778888887776654 3345677788888888888
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 004480 414 VEQAMHLFEEMLQAGCEPNSQCCNILLQACV 444 (750)
Q Consensus 414 ~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~ 444 (750)
+++|++.|++..+.. .-+...-+.|...-|
T Consensus 692 i~~a~~~~~~a~~~~-~~~~~~~~~l~~i~c 721 (886)
T KOG4507|consen 692 ISGALEAFRQALKLT-TKCPECENSLKLIRC 721 (886)
T ss_pred hHHHHHHHHHHHhcC-CCChhhHHHHHHHHH
Confidence 899998888887763 334455555554433
No 466
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=20.18 E-value=2.2e+02 Score=27.89 Aligned_cols=68 Identities=15% Similarity=0.107 Sum_probs=0.0
Q ss_pred hhhHHHHHHHHhhcCChHHHHHHHHHHHHhcCChhhHHhhhhHHHHHHHHHhhhhcCchhHHHHHHHHHHhcCCCccc
Q 004480 71 NDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLE 148 (750)
Q Consensus 71 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~p~~ 148 (750)
.......+.-.-+.|+.++|..+|+.+++. .|+....++..+.+ .-..++.-+|-.+|-+++. +.|..
T Consensus 116 A~~Al~~A~~~~~~Gk~ekA~~lfeHAlal--aP~~p~~L~e~G~f------~E~~~~iv~ADq~Y~~ALt--isP~n 183 (472)
T KOG3824|consen 116 AILALKAAGRSRKDGKLEKAMTLFEHALAL--APTNPQILIEMGQF------REMHNEIVEADQCYVKALT--ISPGN 183 (472)
T ss_pred HHHHHHHHHHHHhccchHHHHHHHHHHHhc--CCCCHHHHHHHhHH------HHhhhhhHhhhhhhheeee--eCCCc
No 467
>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=20.12 E-value=1.8e+02 Score=21.76 Aligned_cols=18 Identities=17% Similarity=0.318 Sum_probs=15.2
Q ss_pred hcCchhHHHHHHHHHHhc
Q 004480 125 REGRIDCVVGVLKKLNEL 142 (750)
Q Consensus 125 ~~g~~~~A~~~l~~~~~~ 142 (750)
..|++++|+++|..+++.
T Consensus 18 ~~gny~eA~~lY~~ale~ 35 (75)
T cd02680 18 EKGNAEEAIELYTEAVEL 35 (75)
T ss_pred HhhhHHHHHHHHHHHHHH
Confidence 679999999999888764
Done!