Query 004480
Match_columns 750
No_of_seqs 629 out of 4126
Neff 11.0
Searched_HMMs 29240
Date Tue Mar 26 17:59:18 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/004480.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_1788-1792//hhsearch_pdb/004480hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xpi_A Anaphase-promoting comp 1.0 1 1 280.5 41.8 472 117-664 88-592 (597)
2 2xpi_A Anaphase-promoting comp 1.0 1 1 280.0 45.8 478 70-626 83-592 (597)
3 4g26_A Pentatricopeptide repea 1.0 1 1 239.3 22.7 205 238-446 7-223 (501)
4 4g26_A Pentatricopeptide repea 1.0 1 1 229.2 25.5 186 222-411 27-223 (501)
5 1w3b_A UDP-N-acetylglucosamine 1.0 1 1 189.0 45.7 313 222-629 68-384 (388)
6 1w3b_A UDP-N-acetylglucosamine 1.0 1 1 186.6 45.6 324 77-460 5-332 (388)
7 2gw1_A Mitochondrial precursor 1.0 1 1 166.7 37.7 445 71-618 6-482 (514)
8 3fp2_A TPR repeat-containing p 1.0 1 1 161.9 35.8 432 70-611 24-490 (537)
9 2y4t_A DNAJ homolog subfamily 1.0 1 1 159.8 41.2 323 59-460 15-356 (450)
10 2gw1_A Mitochondrial precursor 1.0 1 1 159.0 35.8 437 118-652 11-480 (514)
No 1
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=1.00 E-value=1 Score=280.55 Aligned_cols=472 Identities=7% Similarity=-0.017 Sum_probs=339.4
Q ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCCCHHH
Q ss_conf 97898532027632799999998760998632245212466699998762068099999999999827999765251889
Q 004480 117 ASGIVKSIREGRIDCVVGVLKKLNELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFR 196 (750)
Q Consensus 117 ~~~i~~~~~~g~~~~A~~~l~~~~~~~~~p~~~~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ 196 (750)
..++..+.+.|++++|+.+|+++.. ..|+.. .+..++..+.. .|++++|+.+++++... +.+...+..
T Consensus 88 ~~~~~~~~~~g~~~~A~~~~~~~~~--~~p~~~----~~~~l~~~~~~---~g~~~~A~~~~~~~~~~---~~~~~~~~~ 155 (597)
T 2xpi_A 88 RLWRHDALMQQQYKCAAFVGEKVLD--ITGNPN----DAFWLAQVYCC---TGDYARAKCLLTKEDLY---NRSSACRYL 155 (597)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHH--HHCCHH----HHHHHHHHHHH---TTCHHHHHHHHHHTCGG---GTCHHHHHH
T ss_pred HHHHHHHHHCCCCHHHHHHHHHHHH--HCCCCH----HHHHHHHHHHH---CCCHHHHHHHHHHHHCC---CCCHHHHHH
T ss_conf 9999999874583479999999996--089935----79999999997---47699999999987335---456508999
Q ss_pred HHHHHHCCCCHHHHHHHHHH-CCC-------------------CCCHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCH
Q ss_conf 99999749994789998621-799-------------------8415999999998239989999999999858999889
Q 004480 197 IVQLCVNKPDVNLAIRYACI-VPR-------------------ADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNM 256 (750)
Q Consensus 197 l~~~~~~~~~~~~A~~~~~~-~~~-------------------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 256 (750)
++..+.+.|++++|.++|+. .|. +..+|+.++..|.+.|++++|+..|+++.+.++ .+.
T Consensus 156 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~ 234 (597)
T 2xpi_A 156 AAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDA-KCY 234 (597)
T ss_dssp HHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCH
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCC-HHH
T ss_conf 9999998866999999984248863223234334321123512589999988999983998999999999997293-256
Q ss_pred HHHHHHHHHHHHCCCHHHHH--HH-HHHHHHCCCCCCHHHHHHHHHHHC--CCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q ss_conf 98999999998229988999--99-999985799866999999997505--99079999999999839997876599999
Q 004480 257 YICRTIIDVCGICGDYMKSR--AI-YEDLRSQNVTLNIYVFNSLMNVNA--HDLKFTLEVYKNMQKLGVMADMASYNILL 331 (750)
Q Consensus 257 ~~~~~l~~~~~~~g~~~~A~--~~-~~~m~~~g~~~~~~~~~~ll~~~~--~~~~~a~~~~~~m~~~g~~~~~~~~~~ll 331 (750)
..+..+...+...+..+.+. .+ +..+...+......+|+.++..+. ++++.|.++|+++.+. +++..+++.++
T Consensus 235 ~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~ 312 (597)
T 2xpi_A 235 EAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGL--EKSSDLLLCKA 312 (597)
T ss_dssp HHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTG--GGCHHHHHHHH
T ss_pred HHHHHHHHHHCCCCHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCC--CCHHHHHHHHH
T ss_conf 9999999850346156789998657742344308899999999999980731399999999876438--83099999999
Q ss_pred HHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHC
Q ss_conf 99998199379999999989766609876678779999999981258999999999999899988999899999999934
Q 004480 332 KACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANA 411 (750)
Q Consensus 332 ~~~~~~g~~~~A~~~~~~~~~~~~~g~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~ 411 (750)
..+.+.|++++|..+|+++... + +.+..++..++.++.+.|++++|..+++++.... +.+..++..++..|.+.
T Consensus 313 ~~~~~~g~~~~A~~~~~~~~~~---~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~ 386 (597)
T 2xpi_A 313 DTLFVRSRFIDVLAITTKILEI---D--PYNLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEKAVTWLAVGIYYLCV 386 (597)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH---C--TTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSHHHHHHHHHHHHHT
T ss_pred HHHHHHCCHHHHHHHHHHHHHC---C--CCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHH
T ss_conf 9999846899999999999972---9--5537999999999998277779999999998518-35479999999999983
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHCCCCC
Q ss_conf 99999999999999859998989999999999970996799999999741001123577778831333212321001346
Q 004480 412 GLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSIT 491 (750)
Q Consensus 412 g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 491 (750)
|++++|..+|+++.+.. +.+..+|+.++.+|.+.|++++|.++|+++....
T Consensus 387 g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---------------------------- 437 (597)
T 2xpi_A 387 NKISEARRYFSKSSTMD-PQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF---------------------------- 437 (597)
T ss_dssp TCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT----------------------------
T ss_pred CCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC----------------------------
T ss_conf 56999999999998729-7778999999999997577799999999999868----------------------------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHH--HCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCHHHHHH
Q ss_conf 88886678764321222787865999999999997--1179999999999985999788899999999973999789999
Q 004480 492 NTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACC--TDYYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQ 569 (750)
Q Consensus 492 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~--~~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~ 569 (750)
+.+..+|+.+...|. ++.++|..+|+++.+... .+..+|+.++..|.+.|++++|..
T Consensus 438 --------------------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~ 496 (597)
T 2xpi_A 438 --------------------QGTHLPYLFLGMQHMQLGNILLANEYLQSSYALFQ-YDPLLLNELGVVAFNKSDMQTAIN 496 (597)
T ss_dssp --------------------TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred --------------------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHHCCHHHHHH
T ss_conf --------------------13438999999999985799999999999998488-876799999999998189999999
Q ss_pred HHHHHHHC----CCCCC--HHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Q ss_conf 99999989----99999--9999999999998299889999999998799989999999999999814997889999999
Q 004480 570 ILKIMRED----GMSPD--VVAYTTAIKVCVRSKRLKQAFSLFEEMKHYQIQPNLVTYITLLRARSRYGSLHEVQQCLAV 643 (750)
Q Consensus 570 ~~~~m~~~----g~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~~~~a~~~ 643 (750)
+|+++.+. +..|+ ..+|..++.+|.+.|++++|.++++++.+.+ ..+..+|..+..+|.+.|++++ |...
T Consensus 497 ~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~g~~~~---A~~~ 572 (597)
T 2xpi_A 497 HFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLS-TNDANVHTAIALVYLHKKIPGL---AITH 572 (597)
T ss_dssp HHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SCCHHHHHHHHHHHHHTTCHHH---HHHH
T ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHCCHHH---HHHH
T ss_conf 99999985323454535499999999999998047999999999999738-9973899999999998178999---9999
Q ss_pred HHHHHHCCCCCCHHHHHHHHH
Q ss_conf 999998499989899999999
Q 004480 644 YQDMWKAGYKANDTYLKELIE 664 (750)
Q Consensus 644 ~~~m~~~g~~p~~~~~~~li~ 664 (750)
++++.+.... +...+..+-.
T Consensus 573 ~~~~l~~~p~-~~~~~~~l~~ 592 (597)
T 2xpi_A 573 LHESLAISPN-EIMASDLLKR 592 (597)
T ss_dssp HHHHHHHCTT-CHHHHHHHHH
T ss_pred HHHHHHCCCC-CHHHHHHHHH
T ss_conf 9999720888-7489999999
No 2
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=1.00 E-value=1 Score=280.03 Aligned_cols=478 Identities=12% Similarity=-0.001 Sum_probs=247.2
Q ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCC
Q ss_conf 14468999987751488278999999999812892367755469999978985320276327999999987609986322
Q 004480 70 RNDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLEL 149 (750)
Q Consensus 70 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~i~~~~~~g~~~~A~~~l~~~~~~~~~p~~~ 149 (750)
....+..++..+.+.|++++|+.+++++....+++. .+..++..+...|++++|..+|+++... .++.
T Consensus 83 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~---------~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~- 150 (597)
T 2xpi_A 83 REDYLRLWRHDALMQQQYKCAAFVGEKVLDITGNPN---------DAFWLAQVYCCTGDYARAKCLLTKEDLY--NRSS- 150 (597)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCCHH---------HHHHHHHHHHHTTCHHHHHHHHHHTCGG--GTCH-
T ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCH---------HHHHHHHHHHHCCCHHHHHHHHHHHHCC--CCCH-
T ss_conf 999999999999874583479999999996089935---------7999999999747699999999987335--4565-
Q ss_pred CCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCC--------------CCCCCCCCHHHHHHHHHCCCCHHHHHHHHH
Q ss_conf 452124666999987620680999999999998279--------------997652518899999974999478999862
Q 004480 150 FDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFR--------------LPVKELDEEFRIVQLCVNKPDVNLAIRYAC 215 (750)
Q Consensus 150 ~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~--------------~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 215 (750)
..+..++.. +...|++++|+++|+++.... ..+.+...+..++..+.+.|++++|...|+
T Consensus 151 ---~~~~~l~~~---~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 224 (597)
T 2xpi_A 151 ---ACRYLAAFC---LVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYK 224 (597)
T ss_dssp ---HHHHHHHHH---HHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred ---HHHHHHHHH---HHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHH
T ss_conf ---089999999---99886699999998424886322323433432112351258999998899998399899999999
Q ss_pred HC----CCCCCHHHHHHHHHHHCCCHHHHHH--H-HHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCC
Q ss_conf 17----9984159999999982399899999--9-999985899988998999999998229988999999999857998
Q 004480 216 IV----PRADILFCNFVREFGKKRDLVSALR--A-YDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVT 288 (750)
Q Consensus 216 ~~----~~~~~~~~~l~~~~~~~g~~~~A~~--~-~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~ 288 (750)
.+ |.+...+..++..+...+....+.. + +..+...+.......|+.++..|.+.|++++|..+|+++.+. +
T Consensus 225 ~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~ 302 (597)
T 2xpi_A 225 EALMVDAKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGL--E 302 (597)
T ss_dssp HHHHHCTTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTG--G
T ss_pred HHHHHCCHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCC--C
T ss_conf 99972932569999999850346156789998657742344308899999999999980731399999999876438--8
Q ss_pred CCHHHHHHHHHHHC--CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCHHHH
Q ss_conf 66999999997505--9907999999999983999787659999999998199379999999989766609876678779
Q 004480 289 LNIYVFNSLMNVNA--HDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTY 366 (750)
Q Consensus 289 ~~~~~~~~ll~~~~--~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~g~~~~~~~~~ 366 (750)
++..+++.+...+. |+++.|..+|+++.+.+ +.+..++..++..+.+.|++++|..+++.+... .+.+...+
T Consensus 303 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~~~~~~~ 376 (597)
T 2xpi_A 303 KSSDLLLCKADTLFVRSRFIDVLAITTKILEID-PYNLDVYPLHLASLHESGEKNKLYLISNDLVDR-----HPEKAVTW 376 (597)
T ss_dssp GCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHH-----CTTSHHHH
T ss_pred CHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCC-CCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH-----CCCCHHHH
T ss_conf 309999999999998468999999999999729-553799999999999827777999999999851-----83547999
Q ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHH
Q ss_conf 99999998125899999999999989998899989999999993499999999999999859998989999999999970
Q 004480 367 STIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEA 446 (750)
Q Consensus 367 ~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~ 446 (750)
..++..|.+.|++++|.++|+++.... +.+..+|..++..|.+.|++++|.++|+++.+.. +.+..+|..+..+|.+.
T Consensus 377 ~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~ 454 (597)
T 2xpi_A 377 LAVGIYYLCVNKISEARRYFSKSSTMD-PQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLFLGMQHMQL 454 (597)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHC
T ss_conf 999999998356999999999998729-7778999999999997577799999999999868-13438999999999985
Q ss_pred CCHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 99679999999974100112357777883133321232100134688886678764321222787865999999999997
Q 004480 447 CQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACC 526 (750)
Q Consensus 447 g~~~~A~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~ 526 (750)
|++++|.++|+++.... +.+..+|+.+...+.
T Consensus 455 g~~~~A~~~~~~~~~~~------------------------------------------------~~~~~~~~~l~~~~~ 486 (597)
T 2xpi_A 455 GNILLANEYLQSSYALF------------------------------------------------QYDPLLLNELGVVAF 486 (597)
T ss_dssp TCHHHHHHHHHHHHHHC------------------------------------------------CCCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHC------------------------------------------------CCCHHHHHHHHHHHH
T ss_conf 79999999999999848------------------------------------------------887679999999999
Q ss_pred H--CHHHHHHHHHHHHHC----CCCCC--HHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCC
Q ss_conf 1--179999999999985----99978--889999999997399978999999999989999999999999999998299
Q 004480 527 T--DYYRVKALMNEMRTV----GLSPN--HISWTILIDACGGSGNVEGALQILKIMREDGMSPDVVAYTTAIKVCVRSKR 598 (750)
Q Consensus 527 ~--~~~~a~~l~~~m~~~----~~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~ 598 (750)
+ +.++|..+|+++.+. +..|+ ..+|..++.+|.+.|++++|..+++++.+.+ +.+..+|..+...|.+.|+
T Consensus 487 ~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~g~ 565 (597)
T 2xpi_A 487 NKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLS-TNDANVHTAIALVYLHKKI 565 (597)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SCCHHHHHHHHHHHHHTTC
T ss_pred HHCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHCC
T ss_conf 818999999999999985323454535499999999999998047999999999999738-9973899999999998178
Q ss_pred HHHHHHHHHHHHHCCCCC-CHHHHHHHHH
Q ss_conf 889999999998799989-9999999999
Q 004480 599 LKQAFSLFEEMKHYQIQP-NLVTYITLLR 626 (750)
Q Consensus 599 ~~~A~~~~~~m~~~g~~p-~~~t~~~li~ 626 (750)
+++|.+.|+++.+. .| +...+..+..
T Consensus 566 ~~~A~~~~~~~l~~--~p~~~~~~~~l~~ 592 (597)
T 2xpi_A 566 PGLAITHLHESLAI--SPNEIMASDLLKR 592 (597)
T ss_dssp HHHHHHHHHHHHHH--CTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHC--CCCCHHHHHHHHH
T ss_conf 99999999999720--8887489999999
No 3
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=1.00 E-value=1 Score=239.33 Aligned_cols=205 Identities=15% Similarity=0.233 Sum_probs=180.5
Q ss_pred HHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCC-----------CH
Q ss_conf 999999999985899988-998999999998229988999999999857998669999999975059-----------90
Q 004480 238 VSALRAYDASKKHLSSPN-MYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAH-----------DL 305 (750)
Q Consensus 238 ~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~-----------~~ 305 (750)
..+..+...+.+.+.... ...++.+|..|++.|++++|+++|++|.+.|+.||..+|+++|.+++. ..
T Consensus 7 s~~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l 86 (501)
T 4g26_A 7 SPSENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGL 86 (501)
T ss_dssp -----------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHH
T ss_pred CHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHCCHH
T ss_conf 45999999999826668979999999999985989999999999999818998783999999999857830433321249
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCHHHHHHH
Q ss_conf 79999999999839997876599999999981993799999999897666098766787799999999812589999999
Q 004480 306 KFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKV 385 (750)
Q Consensus 306 ~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~g~~~~~~~~~~~li~~~~~~g~~~~a~~~ 385 (750)
+.|.++|++|...|+.||..+|+.+|.+|++.|++++|.++|++|.. .| +.||..+|+.+|.+|++.|++++|.++
T Consensus 87 ~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~---~g-~~Pd~~tyn~lI~~~~~~g~~~~A~~l 162 (501)
T 4g26_A 87 SRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKA---FG-IQPRLRSYGPALFGFCRKGDADKAYEV 162 (501)
T ss_dssp HHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH---TT-CCCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH---CC-CCCCCCEEHHHHHHHHHCCCHHHHHHH
T ss_conf 99999999999808999899999999999846977889999999997---28-988611104899999988899999999
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHH
Q ss_conf 9999989998899989999999993499999999999999859998989999999999970
Q 004480 386 KEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEA 446 (750)
Q Consensus 386 ~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~ 446 (750)
|++|.+.|+.||..+|+.||.+|++.|+.++|.+++++|.+.+..|+..||+.++..++..
T Consensus 163 ~~~M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 163 DAHMVESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp HHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSH
T ss_pred HHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCC
T ss_conf 9999862999999999999999853898999999999999948996999999999998307
No 4
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=1.00 E-value=1 Score=229.18 Aligned_cols=186 Identities=18% Similarity=0.248 Sum_probs=176.3
Q ss_pred CHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCC---------HHHHHHHHHHHHHCCCCCCHH
Q ss_conf 15999999998239989999999999858999889989999999982299---------889999999998579986699
Q 004480 222 ILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGD---------YMKSRAIYEDLRSQNVTLNIY 292 (750)
Q Consensus 222 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---------~~~A~~~~~~m~~~g~~~~~~ 292 (750)
..++.++.+|++.|++++|+++|++|.+.|+.||..+|+.++.+|++.+. +++|.++|++|...|+.||..
T Consensus 27 ~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~ 106 (501)
T 4g26_A 27 ALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEA 106 (501)
T ss_dssp HHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHCCHHHHHHHHHHHHHHHCCCCCHH
T ss_conf 99999999998598999999999999981899878399999999985783043332124999999999999808999899
Q ss_pred HHHHHHHHHC--CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHH
Q ss_conf 9999997505--99079999999999839997876599999999981993799999999897666098766787799999
Q 004480 293 VFNSLMNVNA--HDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIV 370 (750)
Q Consensus 293 ~~~~ll~~~~--~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~g~~~~~~~~~~~li 370 (750)
+|+++|.+++ |+++.|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.+ .| +.||..+|+.++
T Consensus 107 tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~---~G-~~Pd~~ty~~Li 182 (501)
T 4g26_A 107 TFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVE---SE-VVPEEPELAALL 182 (501)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---TT-CCCCHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCEEHHHHHHHHHCCCHHHHHHHHHHHHH---CC-CCCCHHHHHHHH
T ss_conf 99999999984697788999999999728988611104899999988899999999999986---29-999999999999
Q ss_pred HHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHC
Q ss_conf 99981258999999999999899988999899999999934
Q 004480 371 KVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANA 411 (750)
Q Consensus 371 ~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~ 411 (750)
.+|++.|++++|.+++++|.+.|..|+..||+.++..|+..
T Consensus 183 ~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 183 KVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSH
T ss_pred HHHHHCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCC
T ss_conf 99853898999999999999948996999999999998307
No 5
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=1.00 E-value=1 Score=189.01 Aligned_cols=313 Identities=15% Similarity=0.113 Sum_probs=136.6
Q ss_pred CHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHH
Q ss_conf 1599999999823998999999999985899988998999999998229988999999999857998669-999999975
Q 004480 222 ILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNI-YVFNSLMNV 300 (750)
Q Consensus 222 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~-~~~~~ll~~ 300 (750)
.++..++..+.+.|++++|+..|+++.+..+ .+..+|..+...+...|++++|...|+++.+.. |+. ..+..+-..
T Consensus 68 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~ 144 (388)
T 1w3b_A 68 EAYSNLGNVYKERGQLQEAIEHYRHALRLKP-DFIDGYINLAAALVAAGDMEGAVQAYVSALQYN--PDLYCVRSDLGNL 144 (388)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC--TTCTHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC--CCCHHHHHHHHHH
T ss_conf 9999999999877999999999999987496-539999999999998589999999999999759--8968999999999
Q ss_pred --HCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCC
Q ss_conf --059907999999999983999787659999999998199379999999989766609876678779999999981258
Q 004480 301 --NAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKW 378 (750)
Q Consensus 301 --~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~g~~~~~~~~~~~li~~~~~~g~ 378 (750)
..|+++.|...|+++.... +.+..++..+...+...|++++|...|+++... .+.+...+..+...+...|+
T Consensus 145 ~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~-----~p~~~~~~~~lg~~~~~~~~ 218 (388)
T 1w3b_A 145 LKALGRLEEAKACYLKAIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTL-----DPNFLDAYINLGNVLKEARI 218 (388)
T ss_dssp HHTTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH-----CTTCHHHHHHHHHHHHTTTC
T ss_pred HHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHC-----CCCCHHHHHHHHHHHHHCCC
T ss_conf 998468999999999998729-897899999999999859999999999999855-----98867999999999998578
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHH
Q ss_conf 99999999999989998899989999999993499999999999999859998989999999999970996799999999
Q 004480 379 WQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRS 458 (750)
Q Consensus 379 ~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~l~~~ 458 (750)
+++|...+.+...... .+..++..+...+.+.|++++|...++++.+.. +.+..+|..+..++.+.|++++|...+++
T Consensus 219 ~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 296 (388)
T 1w3b_A 219 FDRAVAAYLRALSLSP-NHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKGSVAEAEDCYNT 296 (388)
T ss_dssp TTHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHH
T ss_conf 9999999999985296-878999999999998688999999999998649-99889999999999986997999999999
Q ss_pred HHHCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCHHHHHHHHHH
Q ss_conf 74100112357777883133321232100134688886678764321222787865999999999997117999999999
Q 004480 459 WTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTDYYRVKALMNE 538 (750)
Q Consensus 459 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~a~~l~~~ 538 (750)
+.
T Consensus 297 al------------------------------------------------------------------------------ 298 (388)
T 1w3b_A 297 AL------------------------------------------------------------------------------ 298 (388)
T ss_dssp HH------------------------------------------------------------------------------
T ss_pred HH------------------------------------------------------------------------------
T ss_conf 98------------------------------------------------------------------------------
Q ss_pred HHHCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCC-C
Q ss_conf 998599978889999999997399978999999999989999999999999999998299889999999998799989-9
Q 004480 539 MRTVGLSPNHISWTILIDACGGSGNVEGALQILKIMREDGMSPDVVAYTTAIKVCVRSKRLKQAFSLFEEMKHYQIQP-N 617 (750)
Q Consensus 539 m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~ 617 (750)
+. .+.+..++..+...+...|++++|...++++.+.. +.+...+..+...+.+.|++++|.+.|+++.+ +.| +
T Consensus 299 --~~-~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~--~~p~~ 372 (388)
T 1w3b_A 299 --RL-CPTHADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIR--ISPTF 372 (388)
T ss_dssp --HH-CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHT--TCTTC
T ss_pred --HH-CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--HCCCC
T ss_conf --64-94449999999999998489999999999998609-87399997799999986888999999999986--19997
Q ss_pred HHHHHHHHHHHH
Q ss_conf 999999999998
Q 004480 618 LVTYITLLRARS 629 (750)
Q Consensus 618 ~~t~~~li~~~~ 629 (750)
...|..+...+.
T Consensus 373 ~~a~~~lg~~~~ 384 (388)
T 1w3b_A 373 ADAYSNMGNTLK 384 (388)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
T ss_conf 899985999998
No 6
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=1.00 E-value=1 Score=186.58 Aligned_cols=324 Identities=14% Similarity=0.062 Sum_probs=159.4
Q ss_pred HHHHHHHCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCCCCHHHH
Q ss_conf 99877514882789999999998128923677554699999789853202763279999999876099863224521246
Q 004480 77 MASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLELFDGSGFK 156 (750)
Q Consensus 77 l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~i~~~~~~g~~~~A~~~l~~~~~~~~~p~~~~~~~~~~ 156 (750)
++..+.+.|++++|+..++.+... +|+....... +...+...|++++|...++.+.+. .|+.. ..+.
T Consensus 5 ~a~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~~------l~~~~~~~~~~~~a~~~~~~a~~~--~p~~~---~~~~ 71 (388)
T 1w3b_A 5 LAHREYQAGDFEAAERHCMQLWRQ--EPDNTGVLLL------LSSIHFQCRRLDRSAHFSTLAIKQ--NPLLA---EAYS 71 (388)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHH------HHHHHHHTTCHHHHHHHHHHHHHH--CTTCH---HHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHH--CCCCHHHHHH------HHHHHHHCCCHHHHHHHHHHHHHC--CCCCH---HHHH
T ss_conf 799998779999999999999984--9788999999------999999868999999999999761--97866---9999
Q ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHC----CCCCCHHHHHHHHHH
Q ss_conf 6699998762068099999999999827999765251889999997499947899986217----998415999999998
Q 004480 157 LLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIV----PRADILFCNFVREFG 232 (750)
Q Consensus 157 ~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~----~~~~~~~~~l~~~~~ 232 (750)
.+... +...|++++|+..|+++.... |+....+..++..+...|++++|...+... |.....+..+...+.
T Consensus 72 ~lg~~---~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 146 (388)
T 1w3b_A 72 NLGNV---YKERGQLQEAIEHYRHALRLK--PDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLK 146 (388)
T ss_dssp HHHHH---HHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHH
T ss_pred HHHHH---HHHCCCHHHHHHHHHHHHHCC--CCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
T ss_conf 99999---987799999999999998749--6539999999999998589999999999999759896899999999999
Q ss_pred HCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCHHHHHHHH
Q ss_conf 23998999999999985899988998999999998229988999999999857998669999999975059907999999
Q 004480 233 KKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKFTLEVY 312 (750)
Q Consensus 233 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~a~~~~ 312 (750)
..|++++|...|+++.+..+ .+..+|..+...+...|++++|...|+++.+.
T Consensus 147 ~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--------------------------- 198 (388)
T 1w3b_A 147 ALGRLEEAKACYLKAIETQP-NFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTL--------------------------- 198 (388)
T ss_dssp TTSCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH---------------------------
T ss_pred HCCCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHC---------------------------
T ss_conf 84689999999999987298-97899999999999859999999999999855---------------------------
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHC
Q ss_conf 99998399978765999999999819937999999998976660987667877999999998125899999999999989
Q 004480 313 KNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSA 392 (750)
Q Consensus 313 ~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~g~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 392 (750)
+ +.+...+..+...+...|++++|...+++.... .+.+..++..+...+...|++++|...|+++...
T Consensus 199 ------~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~-----~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 266 (388)
T 1w3b_A 199 ------D-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSL-----SPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIEL 266 (388)
T ss_dssp ------C-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHH-----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred ------C-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH-----CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_conf ------9-886799999999999857899999999999852-----9687899999999999868899999999999864
Q ss_pred CCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHH
Q ss_conf 99889998999999999349999999999999985999898999999999997099679999999974
Q 004480 393 GVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWT 460 (750)
Q Consensus 393 g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~l~~~~~ 460 (750)
+. .+..+|..+...+.+.|++++|...++++.+.. +.+..++..+...+.+.|++++|...++++.
T Consensus 267 ~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 332 (388)
T 1w3b_A 267 QP-HFPDAYCNLANALKEKGSVAEAEDCYNTALRLC-PTHADSLNNLANIKREQGNIEEAVRLYRKAL 332 (388)
T ss_dssp CS-SCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHT
T ss_pred CC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
T ss_conf 99-988999999999998699799999999998649-4449999999999998489999999999998
No 7
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=1.00 E-value=1 Score=166.66 Aligned_cols=445 Identities=11% Similarity=-0.048 Sum_probs=197.4
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCC
Q ss_conf 44689999877514882789999999998128923677554699999789853202763279999999876099863224
Q 004480 71 NDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLELF 150 (750)
Q Consensus 71 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~i~~~~~~g~~~~A~~~l~~~~~~~~~p~~~~ 150 (750)
...+...+..+.+.|++++|+..|++++...+++ ..+..++..+...|++++|+..++++.+. .|+..
T Consensus 6 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~---------~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~- 73 (514)
T 2gw1_A 6 ALALKDKGNQFFRNKKYDDAIKYYNWALELKEDP---------VFYSNLSACYVSVGDLKKVVEMSTKALEL--KPDYS- 73 (514)
T ss_dssp HHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCCCH---------HHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CSCCH-
T ss_pred HHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHCC--CHHHH-
T ss_conf 7999998789998602789999999998559227---------89986889999885499999999877606--93789-
Q ss_pred CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHCCCC-----CCHHH
Q ss_conf 5212466699998762068099999999999827999765251889999997499947899986217998-----41599
Q 004480 151 DGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRA-----DILFC 225 (750)
Q Consensus 151 ~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-----~~~~~ 225 (750)
..+..+.. .+...|++++|+..|+++.... |.+.......+..+........+.+.+..+... .....
T Consensus 74 --~~~~~l~~---~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 146 (514)
T 2gw1_A 74 --KVLLRRAS---ANEGLGKFADAMFDLSVLSLNG--DFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQ 146 (514)
T ss_dssp --HHHHHHHH---HHHHTTCHHHHHHHHHHHHHSS--SCCGGGTHHHHHHHHHHHHHHHHTTC-----------------
T ss_pred --HHHHHHHH---HHHHHHHHHHHHHHHHHHHHCC--CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf --99998889---9998766888999999999559--8751137899999999999999999999899998766512677
Q ss_pred HHHHHHHHCCCHHHHHHHHHHHHHCCC---------CCCHHHHHHHHHHHHH---CCCHHHHHHHHHHHHH-----CCCC
Q ss_conf 999999823998999999999985899---------9889989999999982---2998899999999985-----7998
Q 004480 226 NFVREFGKKRDLVSALRAYDASKKHLS---------SPNMYICRTIIDVCGI---CGDYMKSRAIYEDLRS-----QNVT 288 (750)
Q Consensus 226 ~l~~~~~~~g~~~~A~~~~~~~~~~~~---------~~~~~~~~~l~~~~~~---~g~~~~A~~~~~~m~~-----~g~~ 288 (750)
.................+...+..... +.+...+......+.. .|++++|...|+++.. ..-.
T Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 226 (514)
T 2gw1_A 147 PAKERKDKQENLPSVTSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKN 226 (514)
T ss_dssp ----------CCCCHHHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTS
T ss_pred HHHHHHHHCCCCCHHHHHHHHHHHCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 24678863447861589999986258788888725995888999989999876233229999999999998866542238
Q ss_pred CCHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHH
Q ss_conf 66999999997505990799999999998399978765999999999819937999999998976660987667877999
Q 004480 289 LNIYVFNSLMNVNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYST 368 (750)
Q Consensus 289 ~~~~~~~~ll~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~g~~~~~~~~~~~ 368 (750)
|+.... .+.+...+..+...+...|++++|...++.+... .|+...+..
T Consensus 227 ~~~~~~-------------------------~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~------~~~~~~~~~ 275 (514)
T 2gw1_A 227 NEDEKL-------------------------KEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIEL------FPRVNSYIY 275 (514)
T ss_dssp TTCHHH-------------------------HHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHH------CCCHHHHHH
T ss_pred CCCCCC-------------------------CHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH------CCCHHHHHH
T ss_conf 100114-------------------------8278999999999999878999999999999863------864899999
Q ss_pred HHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCC
Q ss_conf 99999812589999999999998999889998999999999349999999999999985999898999999999997099
Q 004480 369 IVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQ 448 (750)
Q Consensus 369 li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~ 448 (750)
+...+...|++++|...++.+..... .+...+..+...+...|++++|...++++.+.. +.+...+..+...+...|+
T Consensus 276 l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~ 353 (514)
T 2gw1_A 276 MALIMADRNDSTEYYNYFDKALKLDS-NNSSVYYHRGQMNFILQNYDQAGKDFDKAKELD-PENIFPYIQLACLAYRENK 353 (514)
T ss_dssp HHHHHHTSSCCTTGGGHHHHHHTTCT-TCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTC-SSCSHHHHHHHHHTTTTTC
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHC-HHHHHHHHHHHHHHHHCCC
T ss_conf 99999988889999999999861386-778999999999998077999999999998738-5028999999999998689
Q ss_pred HHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHH--
Q ss_conf 679999999974100112357777883133321232100134688886678764321222787865999999999997--
Q 004480 449 FDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACC-- 526 (750)
Q Consensus 449 ~~~A~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~-- 526 (750)
+++|...++++.... +.+...+..+...+.
T Consensus 354 ~~~A~~~~~~~~~~~------------------------------------------------~~~~~~~~~la~~~~~~ 385 (514)
T 2gw1_A 354 FDDCETLFSEAKRKF------------------------------------------------PEAPEVPNFFAEILTDK 385 (514)
T ss_dssp HHHHHHHHHHHHHHS------------------------------------------------TTCSHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHC------------------------------------------------CCCHHHHHHHHHHHHHC
T ss_conf 999999999999875------------------------------------------------46778999999999878
Q ss_pred HCHHHHHHHHHHHHHCCCC-CC----HHHHHHHHHHHHC---CCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCC
Q ss_conf 1179999999999985999-78----8899999999973---99978999999999989999999999999999998299
Q 004480 527 TDYYRVKALMNEMRTVGLS-PN----HISWTILIDACGG---SGNVEGALQILKIMREDGMSPDVVAYTTAIKVCVRSKR 598 (750)
Q Consensus 527 ~~~~~a~~l~~~m~~~~~~-p~----~~~~~~li~~~~~---~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~ 598 (750)
++.++|...++.+...... ++ ...+..+...+.. .|++++|...++++.+.. +.+...+..+...|.+.|+
T Consensus 386 ~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~ 464 (514)
T 2gw1_A 386 NDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLD-PRSEQAKIGLAQMKLQQED 464 (514)
T ss_dssp TCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred CCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHCC
T ss_conf 899999999999997612332178999999999999866332588899999999998758-5558999999999998257
Q ss_pred HHHHHHHHHHHHHCCCCCCH
Q ss_conf 88999999999879998999
Q 004480 599 LKQAFSLFEEMKHYQIQPNL 618 (750)
Q Consensus 599 ~~~A~~~~~~m~~~g~~p~~ 618 (750)
.++|...|++..+. .|+.
T Consensus 465 ~~~A~~~~~~a~~~--~~~~ 482 (514)
T 2gw1_A 465 IDEAITLFEESADL--ARTM 482 (514)
T ss_dssp HHHHHHHHHHHHHH--CSSH
T ss_pred HHHHHHHHHHHHHH--CCCC
T ss_conf 99999999999876--6146
No 8
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=1.00 E-value=1 Score=161.92 Aligned_cols=432 Identities=10% Similarity=0.000 Sum_probs=195.9
Q ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCC
Q ss_conf 14468999987751488278999999999812892367755469999978985320276327999999987609986322
Q 004480 70 RNDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLEL 149 (750)
Q Consensus 70 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~i~~~~~~g~~~~A~~~l~~~~~~~~~p~~~ 149 (750)
....+..++..+.+.|++++|+..|++++.. +|... ..+..++..+...|++++|+..++++.+. .|+..
T Consensus 24 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~------~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~ 93 (537)
T 3fp2_A 24 YAVQLKNRGNHFFTAKNFNEAIKYYQYAIEL--DPNEP------VFYSNISACYISTGDLEKVIEFTTKALEI--KPDHS 93 (537)
T ss_dssp HHHHHHHHHHHHHHTTCCC-CHHHHHHHHHH--CTTCH------HHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCH
T ss_pred HHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH--CCCCC------HHHHHHHHHHHHCCCHHHHHHHHHHHHHC--CCCHH
T ss_conf 8999999999999864299999999999863--89984------89999999999868999999999999860--98628
Q ss_pred CCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHCCC-------CCC
Q ss_conf 4521246669999876206809999999999982799976525188999999749994789998621799-------841
Q 004480 150 FDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPR-------ADI 222 (750)
Q Consensus 150 ~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-------~~~ 222 (750)
..+..+ ...+...|++++|+..|+ ..... |+....+ +..+...+....|...+...-. ...
T Consensus 94 ---~~~~~l---a~~~~~~g~~~~A~~~~~-~~~~~--~~~~~~~---~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~ 161 (537)
T 3fp2_A 94 ---KALLRR---ASANESLGNFTDAMFDLS-VLSLN--GDFDGAS---IEPMLERNLNKQAMKVLNENLSKDEGRGSQVL 161 (537)
T ss_dssp ---HHHHHH---HHHHHHHTCHHHHHHHHH-HHC----------------CHHHHHHHHHHHHHHHHHCC-------CCC
T ss_pred ---HHHHHH---HHHHHHCCCHHHHHHHHH-HHHCC--CCCCHHH---HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
T ss_conf ---999999---999998389999999999-98648--7878588---99999877898899999999974745454345
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHHC--------CCHHHHHHHHHHHHHCCCCCCHH-
Q ss_conf 59999999982399899999999998589998899-899999999822--------99889999999998579986699-
Q 004480 223 LFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMY-ICRTIIDVCGIC--------GDYMKSRAIYEDLRSQNVTLNIY- 292 (750)
Q Consensus 223 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~--------g~~~~A~~~~~~m~~~g~~~~~~- 292 (750)
.....+..+....+...+...+..... ..+... ....+...+... |++++|..+|+.+.+.... +..
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~-~~~~ 238 (537)
T 3fp2_A 162 PSNTSLASFFGIFDSHLEVSSVNTSSN--YDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTV-DDPL 238 (537)
T ss_dssp CCHHHHHHHHHTSCHHHHHHTSCCCCS--SCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CC-CHHH
T ss_pred CHHHHHHHHHHHCCHHHHHHHHHHCCC--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CCHH
T ss_conf 067579999974474999998763256--4617899999998788764020688887999999999999987877-4044
Q ss_pred ------HHHHHHH--HHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCHH
Q ss_conf ------9999997--50599079999999999839997876599999999981993799999999897666098766787
Q 004480 293 ------VFNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVF 364 (750)
Q Consensus 293 ------~~~~ll~--~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~g~~~~~~~ 364 (750)
.+..+-. ...++++.|...++...... |+...+..+...+...|++++|...++.+... .+.+..
T Consensus 239 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-----~~~~~~ 311 (537)
T 3fp2_A 239 RENAALALCYTGIFHFLKNNLLDAQVLLQESINLH--PTPNSYIFLALTLADKENSQEFFKFFQKAVDL-----NPEYPP 311 (537)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHH-----CTTCHH
T ss_pred HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCC--CCCHHHHHHHHHHHHHCCHHHHHHHHHHHHCC-----CCCCHH
T ss_conf 59999999999999875455789999999998669--87469999999999803799999999997545-----999879
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q ss_conf 79999999981258999999999999899988999899999999934999999999999998599989899999999999
Q 004480 365 TYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACV 444 (750)
Q Consensus 365 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~ 444 (750)
.+..+...+...|++++|...+++....... +...+..+...+...|++++|...++++.+.. +.+...+..+...+.
T Consensus 312 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~ 389 (537)
T 3fp2_A 312 TYYHRGQMYFILQDYKNAKEDFQKAQSLNPE-NVYPYIQLACLLYKQGKFTESEAFFNETKLKF-PTLPEVPTFFAEILT 389 (537)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHH
T ss_conf 9999999998668999999999999985999-77999999999998477999999999998739-998599999999998
Q ss_pred HHCCHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHH
Q ss_conf 70996799999999741001123577778831333212321001346888866787643212227878659999999999
Q 004480 445 EACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKA 524 (750)
Q Consensus 445 ~~g~~~~A~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~ 524 (750)
..|++++|...+++........
T Consensus 390 ~~g~~~~A~~~~~~a~~~~~~~---------------------------------------------------------- 411 (537)
T 3fp2_A 390 DRGDFDTAIKQYDIAKRLEEVQ---------------------------------------------------------- 411 (537)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHC----------------------------------------------------------
T ss_pred HHCCHHHHHHHHHHHHHCCCCC----------------------------------------------------------
T ss_conf 8378899999999998709762----------------------------------------------------------
Q ss_pred HHHCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCC----------CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q ss_conf 9711799999999999859997888999999999739----------997899999999998999999999999999999
Q 004480 525 CCTDYYRVKALMNEMRTVGLSPNHISWTILIDACGGS----------GNVEGALQILKIMREDGMSPDVVAYTTAIKVCV 594 (750)
Q Consensus 525 ~~~~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~----------g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~ 594 (750)
.........+......+... |++++|...++++.+.. +.+...+..+...|.
T Consensus 412 -----------------~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~ 473 (537)
T 3fp2_A 412 -----------------EKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELD-PRSEQAKIGLAQLKL 473 (537)
T ss_dssp -----------------SSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred -----------------HHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHH
T ss_conf -----------------44688899999889999997640100224757999999999999749-997899999999999
Q ss_pred HCCCHHHHHHHHHHHHH
Q ss_conf 82998899999999987
Q 004480 595 RSKRLKQAFSLFEEMKH 611 (750)
Q Consensus 595 ~~g~~~~A~~~~~~m~~ 611 (750)
+.|+.++|.+.|++..+
T Consensus 474 ~~g~~~~A~~~~~~al~ 490 (537)
T 3fp2_A 474 QMEKIDEAIELFEDSAI 490 (537)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HHCCHHHHHHHHHHHHH
T ss_conf 85149999999999998
No 9
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=1.00 E-value=1 Score=159.85 Aligned_cols=323 Identities=10% Similarity=0.010 Sum_probs=179.7
Q ss_pred HHHCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
Q ss_conf 12202358752144689999877514882789999999998128923677554699999789853202763279999999
Q 004480 59 LLSTVRRDLSSRNDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKK 138 (750)
Q Consensus 59 ~~~~l~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~i~~~~~~g~~~~A~~~l~~ 138 (750)
+.+.+..+|.. ...+..++..+.+.|++++|+..|++++.. .|.. ...+..++..+...|++++|+..|++
T Consensus 15 ~~~~~~~~p~~-~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~--~p~~------~~~~~~l~~~~~~~g~~~~A~~~~~~ 85 (450)
T 2y4t_A 15 TENLYFQSMAD-VEKHLELGKKLLAAGQLADALSQFHAAVDG--DPDN------YIAYYRRATVFLAMGKSKAALPDLTK 85 (450)
T ss_dssp --------CHH-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTC------HHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred CCCCCCCCHHH-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--CCCC------HHHHHHHHHHHHHCCCHHHHHHHHHH
T ss_conf 42356653789-999999999999879999999999999984--9716------89999999999987997999999999
Q ss_pred HHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCC---CCHHHHHHHHHCCCCHHHHHHHHH
Q ss_conf 87609986322452124666999987620680999999999998279997652---518899999974999478999862
Q 004480 139 LNELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKEL---DEEFRIVQLCVNKPDVNLAIRYAC 215 (750)
Q Consensus 139 ~~~~~~~p~~~~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~A~~~~~ 215 (750)
+.+. .|+.. ..+..+.. .+...|++++|+..|+++.... |... ..+..++..+..
T Consensus 86 al~~--~p~~~---~~~~~l~~---~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~------------ 143 (450)
T 2y4t_A 86 VIQL--KMDFT---AARLQRGH---LLLKQGKLDEAEDDFKKVLKSN--PSENEEKEAQSQLIKSDEM------------ 143 (450)
T ss_dssp HHHH--CTTCH---HHHHHHHH---HHHHTTCHHHHHHHHHHHHTSC--CCHHHHHHHHHHHHHHHHH------------
T ss_pred HHHC--CCCCH---HHHHHHHH---HHHHCCCHHHHHHHHHHHHHCC--CCCHHHHHHHHHHHHHHHH------------
T ss_conf 9844--98748---99999999---9998699999999999997249--9970168899999999999------------
Q ss_pred HCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHH
Q ss_conf 17998415999999998239989999999999858999889989999999982299889999999998579986699999
Q 004480 216 IVPRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFN 295 (750)
Q Consensus 216 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~ 295 (750)
..+..++..+...|++++|+..|+.+.+..+ .+..++..+...+.+.|++++|...|+++.+..
T Consensus 144 ------~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--------- 207 (450)
T 2y4t_A 144 ------QRLRSQALNAFGSGDYTAAIAFLDKILEVCV-WDAELRELRAECFIKEGEPRKAISDLKAASKLK--------- 207 (450)
T ss_dssp ------HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH---------
T ss_pred ------HHHHHHHHHHHHCCCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC---------
T ss_conf ------9999999999986899999999999998688-976999999999987799999999999999868---------
Q ss_pred HHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHH------
Q ss_conf 99975059907999999999983999787659999999998199379999999989766609876678779999------
Q 004480 296 SLMNVNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTI------ 369 (750)
Q Consensus 296 ~ll~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~g~~~~~~~~~~~l------ 369 (750)
+.+...+..+...+...|++++|...|+.+... .+.+...+..+
T Consensus 208 -------------------------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~p~~~~~~~~~~~~~~~ 257 (450)
T 2y4t_A 208 -------------------------NDNTEAFYKISTLYYQLGDHELSLSEVRECLKL-----DQDHKRCFAHYKQVKKL 257 (450)
T ss_dssp -------------------------CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCHHHHHHHHHHHHH
T ss_pred -------------------------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH-----CCCHHHHHHHHHHHHHH
T ss_conf -------------------------898799999999999759999999999999875-----99808999999999999
Q ss_pred ------HHHHHHCCCHHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q ss_conf ------9999812589999999999998999889----998999999999349999999999999985999898999999
Q 004480 370 ------VKVFADAKWWQMALKVKEDMLSAGVTPN----TITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNIL 439 (750)
Q Consensus 370 ------i~~~~~~g~~~~a~~~~~~m~~~g~~p~----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l 439 (750)
...+...|++++|...|+.+...... + ...+..+...+.+.|++++|...++++.+.. +.+...|..+
T Consensus 258 ~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~-p~~~~~~~~l 335 (450)
T 2y4t_A 258 NKLIESAEELIRDGRYTDATSKYESVMKTEPS-IAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQME-PDNVNALKDR 335 (450)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCS-SHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCC-CHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHH
T ss_conf 99999999998717999999999999850873-368999999999999998788999999999998848-4548999999
Q ss_pred HHHHHHHCCHHHHHHHHHHHH
Q ss_conf 999997099679999999974
Q 004480 440 LQACVEACQFDRAFRLFRSWT 460 (750)
Q Consensus 440 l~~~~~~g~~~~A~~l~~~~~ 460 (750)
..+|...|++++|...+++..
T Consensus 336 ~~~~~~~~~~~~A~~~~~~al 356 (450)
T 2y4t_A 336 AEAYLIEEMYDEAIQDYETAQ 356 (450)
T ss_dssp HHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHCCHHHHHHHHHHHH
T ss_conf 999987037999999999998
No 10
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=1.00 E-value=1 Score=159.01 Aligned_cols=437 Identities=9% Similarity=-0.012 Sum_probs=284.2
Q ss_pred HHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCCCHHHH
Q ss_conf 78985320276327999999987609986322452124666999987620680999999999998279997652518899
Q 004480 118 SGIVKSIREGRIDCVVGVLKKLNELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRI 197 (750)
Q Consensus 118 ~~i~~~~~~g~~~~A~~~l~~~~~~~~~p~~~~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l 197 (750)
.....+...|++++|+..|+++.+.. |+. ..+..+.. .+...|++++|+..+++++... |...
T Consensus 11 ~~g~~~~~~g~~~~A~~~~~~al~~~--p~~----~~~~~la~---~~~~~g~~~~A~~~~~~al~~~--p~~~------ 73 (514)
T 2gw1_A 11 DKGNQFFRNKKYDDAIKYYNWALELK--EDP----VFYSNLSA---CYVSVGDLKKVVEMSTKALELK--PDYS------ 73 (514)
T ss_dssp HHHHHHHHTSCHHHHHHHHHHHHHHC--CCH----HHHHHHHH---HHHHHTCHHHHHHHHHHHHHHC--SCCH------
T ss_pred HHHHHHHHHCCHHHHHHHHHHHHHCC--CCH----HHHHHHHH---HHHHHHHHHHHHHHHHHHHCCC--HHHH------
T ss_conf 98789998602789999999998559--227----89986889---9998854999999998776069--3789------
Q ss_pred HHHHHCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHH
Q ss_conf 99997499947899986217998415999999998239989999999999858999889989999999982299889999
Q 004480 198 VQLCVNKPDVNLAIRYACIVPRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRA 277 (750)
Q Consensus 198 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 277 (750)
.++..++..+...|++++|...|+.+...+. ++.......+..+........+.+
T Consensus 74 ------------------------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 128 (514)
T 2gw1_A 74 ------------------------KVLLRRASANEGLGKFADAMFDLSVLSLNGD-FNDASIEPMLERNLNKQAMSKLKE 128 (514)
T ss_dssp ------------------------HHHHHHHHHHHHTTCHHHHHHHHHHHHHSSS-CCGGGTHHHHHHHHHHHHHHHHTT
T ss_pred ------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf ------------------------9999888999987668889999999995598-751137899999999999999999
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHH--HCCCHHHHHHHHHHHHHCCC---------CCCHHHHHHHHHHHHH---CCCHHHH
Q ss_conf 99999857998669999999975--05990799999999998399---------9787659999999998---1993799
Q 004480 278 IYEDLRSQNVTLNIYVFNSLMNV--NAHDLKFTLEVYKNMQKLGV---------MADMASYNILLKACCL---AGNTVLA 343 (750)
Q Consensus 278 ~~~~m~~~g~~~~~~~~~~ll~~--~~~~~~~a~~~~~~m~~~g~---------~~~~~~~~~ll~~~~~---~g~~~~A 343 (750)
.+..+...+..++...+...... ..........+...+..... +.+...+......+.. .|++++|
T Consensus 129 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A 208 (514)
T 2gw1_A 129 KFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKA 208 (514)
T ss_dssp C---------------------------CCCCHHHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHH
T ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCHHHHHHHHHHHCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCHHHH
T ss_conf 99989999876651267724678863447861589999986258788888725995888999989999876233229999
Q ss_pred HHHHHHHHH-----HHHCCCC----CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCH
Q ss_conf 999999897-----6660987----6678779999999981258999999999999899988999899999999934999
Q 004480 344 QEIYGEVKH-----LEAKGVL----KLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLV 414 (750)
Q Consensus 344 ~~~~~~~~~-----~~~~g~~----~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~ 414 (750)
...|+++.. ....... +.+...+..+...+...|++++|...++.+...... ...+..+...+...|++
T Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~--~~~~~~l~~~~~~~~~~ 286 (514)
T 2gw1_A 209 DESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELFPR--VNSYIYMALIMADRNDS 286 (514)
T ss_dssp HHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHTSSCC
T ss_pred HHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHHCCCH
T ss_conf 9999999988665422381001148278999999999999878999999999999863864--89999999999988889
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCC
Q ss_conf 99999999999859998989999999999970996799999999741001123577778831333212321001346888
Q 004480 415 EQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTP 494 (750)
Q Consensus 415 ~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 494 (750)
++|...++++.+.. +.+...+..+...+...|++++|...+++.....
T Consensus 287 ~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~------------------------------- 334 (514)
T 2gw1_A 287 TEYYNYFDKALKLD-SNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELD------------------------------- 334 (514)
T ss_dssp TTGGGHHHHHHTTC-TTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTC-------------------------------
T ss_pred HHHHHHHHHHHHCC-CCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHC-------------------------------
T ss_conf 99999999986138-6778999999999998077999999999998738-------------------------------
Q ss_pred CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHH--HCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHH
Q ss_conf 86678764321222787865999999999997--1179999999999985999788899999999973999789999999
Q 004480 495 NFVPNSHYSSFDKRFSFKPTTTTYNILMKACC--TDYYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQILK 572 (750)
Q Consensus 495 ~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~--~~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 572 (750)
+.+...+..+...+. ++.++|...++.+.... +.+...+..+...+...|++++|...++
T Consensus 335 -----------------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~ 396 (514)
T 2gw1_A 335 -----------------PENIFPYIQLACLAYRENKFDDCETLFSEAKRKF-PEAPEVPNFFAEILTDKNDFDKALKQYD 396 (514)
T ss_dssp -----------------SSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred -----------------HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHH
T ss_conf -----------------5028999999999998689999999999999875-4677899999999987889999999999
Q ss_pred HHHHCCC-CCC----HHHHHHHHHHHHH---CCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Q ss_conf 9998999-999----9999999999998---2998899999999987999899999999999998149978899999999
Q 004480 573 IMREDGM-SPD----VVAYTTAIKVCVR---SKRLKQAFSLFEEMKHYQIQPNLVTYITLLRARSRYGSLHEVQQCLAVY 644 (750)
Q Consensus 573 ~m~~~g~-~p~----~~~~~~li~~~~~---~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~~~~a~~~~ 644 (750)
++.+... .++ ...+..+...+.. .|++++|.+.++++.... ..+...+..+...+...|+.++ |...+
T Consensus 397 ~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~---A~~~~ 472 (514)
T 2gw1_A 397 LAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLD-PRSEQAKIGLAQMKLQQEDIDE---AITLF 472 (514)
T ss_dssp HHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHH---HHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHCCHHH---HHHHH
T ss_conf 9997612332178999999999999866332588899999999998758-5558999999999998257999---99999
Q ss_pred HHHHHCCC
Q ss_conf 99998499
Q 004480 645 QDMWKAGY 652 (750)
Q Consensus 645 ~~m~~~g~ 652 (750)
++..+...
T Consensus 473 ~~a~~~~~ 480 (514)
T 2gw1_A 473 EESADLAR 480 (514)
T ss_dssp HHHHHHCS
T ss_pred HHHHHHCC
T ss_conf 99987661
Done!