BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 004481
(750 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2XTZ|A Chain A, Crystal Structure Of The G Alpha Protein Atgpa1 From
Arabidopsis Thaliana
pdb|2XTZ|B Chain B, Crystal Structure Of The G Alpha Protein Atgpa1 From
Arabidopsis Thaliana
pdb|2XTZ|C Chain C, Crystal Structure Of The G Alpha Protein Atgpa1 From
Arabidopsis Thaliana
Length = 354
Score = 74.7 bits (182), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 63/226 (27%), Positives = 108/226 (47%), Gaps = 37/226 (16%)
Query: 531 LQKLLLVGCSGSGTSTIFKQAKILYKAVPFSDDEHENIKLKIQSNAYGYLGILLEGRERF 590
++KLLL+G SG STIFKQ K+L++ F + E ++ I +N Y + +L +G + F
Sbjct: 9 IRKLLLLGAGESGKSTIFKQIKLLFQT-GFDEGELKSYVPVIHANVYQTIKLLHDGTKEF 67
Query: 591 EEEILGEKRKKQSSDETNPVGSSDSTDGKTIYTIGPRLKAFSDWLLKTMVSGNLEAIFPA 650
+ +D + SS+S IG +L + + G L+ +P
Sbjct: 68 AQ---------NETDSAKYMLSSESI------AIGEKL---------SEIGGRLD--YPR 101
Query: 651 ATREYSPLVEELWKDAAIQATYSRRSELEMLSSVASYFLERVVDISRTDYEPSDLDILYA 710
T++ + +E LWKD AIQ T +R +EL++ Y +E + +S +Y P+ D+LYA
Sbjct: 102 LTKDIAEGIETLWKDPAIQETXARGNELQV-PDXTKYLMENLKRLSDINYIPTKEDVLYA 160
Query: 711 EGVTSSNGLACVDFSFPRSASDDS------VDTADQHDSLLRWVPV 750
+ G+ + FS P + S D Q + +W+ +
Sbjct: 161 R--VRTTGVVEIQFS-PVGENKKSGEVYRLFDVGGQRNERRKWIHL 203
>pdb|1ZCB|A Chain A, Crystal Structure Of G Alpha 13 In Complex With Gdp
pdb|3AB3|A Chain A, Crystal Structure Of P115rhogef Rgs Domain In Complex With
G Alpha 13
pdb|3AB3|C Chain C, Crystal Structure Of P115rhogef Rgs Domain In Complex With
G Alpha 13
Length = 362
Score = 65.5 bits (158), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 67/243 (27%), Positives = 102/243 (41%), Gaps = 32/243 (13%)
Query: 506 SSNPGAEQGSGLMSRSVPDYIERRT-LQKLLLVGCSGSGTSTIFKQAKILYKAVPFSDDE 564
+ + A + S ++ R++ + ER L K+LL+G SG ST KQ +I++ F
Sbjct: 7 AEDKAAVERSKMIDRNLREDGERSARLVKILLLGAGESGKSTFLKQMRIIH-GQDFDQRA 65
Query: 565 HENIKLKIQSNAYGYLGILLEGRERFEEEILGEKRKKQSSDETNPVGSSDSTDGKTIYTI 624
E + I SN + +L++ RE+ P G + +
Sbjct: 66 REEFRPTIYSNVIKGMRVLVDAREKLH----------------IPWGDNKNQ------LH 103
Query: 625 GPRLKAFSDWLLKTMVSGNLEAIFPAATREYSPLVEELWKDAAIQATYSRRSELEMLSSV 684
G +L AF D G +E +Y P + LW+D+ IQ Y RR E ++ SV
Sbjct: 104 GDKLMAF-DTRAPMAAQGMVET---RVFLQYLPAIRALWEDSGIQNAYDRRREFQLGESV 159
Query: 685 ASYFLERVVDISRTDYEPSDLDILYAEGVTSSNGLACVDFSFPRSASDDSVDTADQHDSL 744
YFL+ + + DY PS DIL A T G+ DF ++ VD Q
Sbjct: 160 -KYFLDNLDKLGVPDYIPSQQDILLARRPTK--GIHEYDFEI-KNVPFKMVDVGGQRSER 215
Query: 745 LRW 747
RW
Sbjct: 216 KRW 218
>pdb|3CX7|A Chain A, Crystal Structure Of Pdzrhogef Rgrgs Domain In A Complex
With Galpha-13 Bound To Gdp-Alf4
pdb|3CX8|A Chain A, Crystal Structure Of Pdzrhogef Rgrgs Domain In A Complex
With Galpha-13 Bound To Gtp-Gamma-S
Length = 338
Score = 64.7 bits (156), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 64/223 (28%), Positives = 93/223 (41%), Gaps = 33/223 (14%)
Query: 525 YIERRTLQKLLLVGCSGSGTSTIFKQAKILYKAVPFSDDEHENIKLKIQSNAYGYLGILL 584
Y++R L K+LL+G SG ST KQ +I++ F E + I SN + +L+
Sbjct: 5 YVKR--LVKILLLGAGESGKSTFLKQMRIIH-GQDFDQRAREEFRPTIYSNVIKGMRVLV 61
Query: 585 EGRERFEEEILGEKRKKQSSDETNPVGSSDSTDGKTIYTIGPRLKAFSDWLLKTMVSGNL 644
+ RE+ P G + + G +L AF D G +
Sbjct: 62 DAREKLH----------------IPWGDNKNQ------LHGDKLMAF-DTRAPMAAQGMV 98
Query: 645 EAIFPAATREYSPLVEELWKDAAIQATYSRRSELEMLSSVASYFLERVVDISRTDYEPSD 704
E +Y P + LW+D+ IQ Y RR E ++ SV YFL+ + + DY PS
Sbjct: 99 ET---RVFLQYLPAIRALWEDSGIQNAYDRRREFQLGESV-KYFLDNLDKLGVPDYIPSQ 154
Query: 705 LDILYAEGVTSSNGLACVDFSFPRSASDDSVDTADQHDSLLRW 747
DIL A T G+ DF ++ VD Q RW
Sbjct: 155 QDILLARRPTK--GIHEYDFEI-KNVPFKMVDVGGQRSERKRW 194
>pdb|1SHZ|A Chain A, Crystal Structure Of The P115rhogef Rgrgs Domain In A
Complex With Galpha(13):galpha(i1) Chimera
pdb|1SHZ|D Chain D, Crystal Structure Of The P115rhogef Rgrgs Domain In A
Complex With Galpha(13):galpha(i1) Chimera
Length = 340
Score = 62.8 bits (151), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 57/194 (29%), Positives = 82/194 (42%), Gaps = 30/194 (15%)
Query: 533 KLLLVGCSGSGTSTIFKQAKILYKAVPFSDDEHENIKLKIQSNAYGYLGILLEGRERFEE 592
KLLL+G SG ST KQ +I++ F E + I SN + +L++ RE+
Sbjct: 14 KLLLLGAGESGKSTFLKQMRIIH-GQDFDQRAREEFRPTIYSNVIKGMRVLVDAREKLH- 71
Query: 593 EILGEKRKKQSSDETNPVGSSDSTDGKTIYTIGPRLKAFSDWLLKTMVSGNLEAIFPAAT 652
P G + + G +L AF D G +E
Sbjct: 72 ---------------IPWGDNKNQ------LHGDKLMAF-DTRAPMAAQGMVET---RVF 106
Query: 653 REYSPLVEELWKDAAIQATYSRRSELEMLSSVASYFLERVVDISRTDYEPSDLDILYAEG 712
+Y P + LW+D+ IQ Y RR E ++ SV YFL+ + + DY PS DIL A
Sbjct: 107 LQYLPAIRALWEDSGIQNAYDRRREFQLGESV-KYFLDNLDKLGVPDYIPSQQDILLARR 165
Query: 713 VTSSNGLACVDFSF 726
T G+ F+F
Sbjct: 166 PTK--GIHETHFTF 177
>pdb|3CX6|A Chain A, Crystal Structure Of Pdzrhogef Rgrgs Domain In A Complex
With Galpha-13 Bound To Gdp
Length = 338
Score = 62.4 bits (150), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 59/200 (29%), Positives = 86/200 (43%), Gaps = 32/200 (16%)
Query: 525 YIERRTLQKLLLVGCSGSGTSTIFKQAKILYKAVPFSDDEHENIKLKIQSNAYGYLGILL 584
Y++R L K+LL+G SG ST KQ +I++ F E + I SN + +L+
Sbjct: 5 YVKR--LVKILLLGAGESGKSTFLKQMRIIH-GQDFDQRAREEFRPTIYSNVIKGMRVLV 61
Query: 585 EGRERFEEEILGEKRKKQSSDETNPVGSSDSTDGKTIYTIGPRLKAFSDWLLKTMVSGNL 644
+ RE+ P G + + G +L AF D G +
Sbjct: 62 DAREKLH----------------IPWGDNKNQ------LHGDKLMAF-DTRAPMAAQGMV 98
Query: 645 EAIFPAATREYSPLVEELWKDAAIQATYSRRSELEMLSSVASYFLERVVDISRTDYEPSD 704
E +Y P + LW+D+ IQ Y RR E ++ SV YFL+ + + DY PS
Sbjct: 99 ET---RVFLQYLPAIRALWEDSGIQNAYDRRREFQLGESV-KYFLDNLDKLGVPDYIPSQ 154
Query: 705 LDILYAEGVTSSNGLACVDF 724
DIL A T G+ DF
Sbjct: 155 QDILLARRPTK--GIHEYDF 172
>pdb|1ZCA|A Chain A, Crystal Structure Of G Alpha 12 In Complex With Gdp, Mg2+
And Alf4-
pdb|1ZCA|B Chain B, Crystal Structure Of G Alpha 12 In Complex With Gdp, Mg2+
And Alf4-
Length = 359
Score = 60.1 bits (144), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 62/222 (27%), Positives = 99/222 (44%), Gaps = 37/222 (16%)
Query: 506 SSNPGAEQGSGLMSRSVPDYIERRTLQKL---LLVGCSGSGTSTIFKQAKILYKAVPFSD 562
+ + A + S ++ R++ + ERR +++L LL+G SG ST KQ +I++
Sbjct: 7 AEDKAAVERSKMIDRNLREDGERRAVRRLVKILLLGAGESGKSTFLKQMRIIHGR----- 61
Query: 563 DEHENIKLKIQSNAYGYLGILLEGRERFEEEILGEKRKKQSSDETNPVGSSDSTDGKTIY 622
+ A LLE R+ + IL R + + + S + K
Sbjct: 62 --------EFDQKA------LLEFRDTIFDNILKGSRVLVDARDKLGIPWQHSENEKH-- 105
Query: 623 TIGPRLKAFSDWLLKTMVSGNLEAIFPAATREYSPLVEELWKDAAIQATYSRRSELEMLS 682
G L AF + L + PA + Y P + LW+D+ I+ +SRRSE ++
Sbjct: 106 --GMFLMAFEN-------KAGL-PVEPATFQLYVPALSALWRDSGIREAFSRRSEFQLGE 155
Query: 683 SVASYFLERVVDISRTDYEPSDLDILYAEGVTSSNGLACVDF 724
SV YFL+ + I + +Y PS DIL A T G+ DF
Sbjct: 156 SV-KYFLDNLDRIGQLNYFPSKQDILLARKATK--GIVEHDF 194
>pdb|3UMS|A Chain A, Crystal Structure Of The G202a Mutant Of Human G-Alpha-I1
Length = 354
Score = 58.2 bits (139), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 57/244 (23%), Positives = 114/244 (46%), Gaps = 39/244 (15%)
Query: 506 SSNPGAEQGSGLMSRSVPDYIERRTLQ-KLLLVGCSGSGTSTIFKQAKILYKAVPFSDDE 564
+ + A + S ++ R++ + E+ + KLLL+G SG STI KQ KI+++A +S++E
Sbjct: 7 AEDKAAVERSKMIDRNLREDGEKAAREVKLLLLGAGESGKSTIVKQMKIIHEA-GYSEEE 65
Query: 565 HENIKLKIQSNAYGYLGILLEGRERFEEEILGEKRKKQSSDETNPVGSSDSTDGKTIYTI 624
+ K + SN + ++ R + + G+ S+ + D + ++
Sbjct: 66 CKQYKAVVYSNTIQSIIAIIRAMGRLKID-FGD--------------SARADDARQLF-- 108
Query: 625 GPRLKAFSDWLLKTMVSGNLEAIFPAATREYSPLVEELWKDAAIQATYSRRSELEMLSSV 684
+++G E F A E + +++ LWKD+ +QA ++R E + L+
Sbjct: 109 --------------VLAGAAEEGFMTA--ELAGVIKRLWKDSGVQACFNRSREYQ-LNDS 151
Query: 685 ASYFLERVVDISRTDYEPSDLDILYAEGVTSSNGLACVDFSFPRSASDDSVDTADQHDSL 744
A+Y+L + I++ +Y P+ D+L + G+ F+F + D A Q
Sbjct: 152 AAYYLNDLDRIAQPNYIPTQQDVLRTR--VKTTGIVETHFTF-KDLHFKMFDVAGQRSER 208
Query: 745 LRWV 748
+W+
Sbjct: 209 KKWI 212
>pdb|4G5O|A Chain A, Structure Of Lgn Gl4GALPHAI3(Q147L) COMPLEX
pdb|4G5O|B Chain B, Structure Of Lgn Gl4GALPHAI3(Q147L) COMPLEX
pdb|4G5O|C Chain C, Structure Of Lgn Gl4GALPHAI3(Q147L) COMPLEX
pdb|4G5O|D Chain D, Structure Of Lgn Gl4GALPHAI3(Q147L) COMPLEX
Length = 330
Score = 58.2 bits (139), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 53/216 (24%), Positives = 99/216 (45%), Gaps = 38/216 (17%)
Query: 533 KLLLVGCSGSGTSTIFKQAKILYKAVPFSDDEHENIKLKIQSNAYGYLGILLEGRERFEE 592
KLLL+G SG STI KQ KI+++ +S+DE + K+ + SN + ++ R +
Sbjct: 11 KLLLLGAGESGKSTIVKQMKIIHED-GYSEDECKQYKVVVYSNTIQSIIAIIRAMGRLKI 69
Query: 593 EILGEKRKKQSSDETNPVGSSDSTDGKTIYTIGPRLKAFSDWLLKTMVSGNLEAIFPAAT 652
+ GE ++ + D + ++ +++G+ E T
Sbjct: 70 D-FGE--------------AARADDARQLF----------------VLAGSAEE--GVMT 96
Query: 653 REYSPLVEELWKDAAIQATYSRRSELEMLSSVASYFLERVVDISRTDYEPSDLDILYAEG 712
E + +++ LW+D +QA +SR E +L+ ASY+L + IS+++Y P+ D+L
Sbjct: 97 PELAGVIKRLWRDGGVQACFSRSREY-LLNDSASYYLNDLDRISQSNYIPTQQDVLRTR- 154
Query: 713 VTSSNGLACVDFSFPRSASDDSVDTADQHDSLLRWV 748
+ G+ F+F + D Q +W+
Sbjct: 155 -VKTTGIVETHFTF-KDLYFKMFDVGGQRSERKKWI 188
>pdb|2ODE|A Chain A, Crystal Structure Of The Heterodimeric Complex Of Human
Rgs8 And Activated Gi Alpha 3
pdb|2ODE|C Chain C, Crystal Structure Of The Heterodimeric Complex Of Human
Rgs8 And Activated Gi Alpha 3
pdb|2V4Z|A Chain A, The Crystal Structure Of The Human G-Protein Subunit Alpha
( Gnai3) In Complex With An Engineered Regulator Of G-
Protein Signaling Type 2 Domain (Rgs2)
Length = 350
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 54/223 (24%), Positives = 107/223 (47%), Gaps = 38/223 (17%)
Query: 506 SSNPGAEQGSGLMSRSVPDYIERRTLQ-KLLLVGCSGSGTSTIFKQAKILYKAVPFSDDE 564
+ + A + S ++ R++ + E+ + KLLL+G SG STI KQ KI+++ +S+DE
Sbjct: 6 AEDKAAVERSKMIDRNLREDGEKAAKEVKLLLLGAGESGKSTIVKQMKIIHED-GYSEDE 64
Query: 565 HENIKLKIQSNAYGYLGILLEGRERFEEEILGEKRKKQSSDETNPVGSSDSTDGKTIYTI 624
+ K+ + SN + ++ R + + GE ++ + D + ++
Sbjct: 65 CKQYKVVVYSNTIQSIIAIIRAMGRLKID-FGE--------------AARADDARQLF-- 107
Query: 625 GPRLKAFSDWLLKTMVSGNLEAIFPAATREYSPLVEELWKDAAIQATYSRRSELEMLSSV 684
+++G+ E T E + +++ LW+D +QA +SR E + L+
Sbjct: 108 --------------VLAGSAEE--GVMTPELAGVIKRLWRDGGVQACFSRSREYQ-LNDS 150
Query: 685 ASYFLERVVDISRTDYEPSDLDILYAEGVTSSNGLACVDFSFP 727
ASY+L + IS+++Y P+ D+L + G+ F+F
Sbjct: 151 ASYYLNDLDRISQSNYIPTQQDVLRTR--VKTTGIVETHFTFK 191
>pdb|2IHB|A Chain A, Crystal Structure Of The Heterodimeric Complex Of Human
Rgs10 And Activated Gi Alpha 3
Length = 323
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 53/216 (24%), Positives = 99/216 (45%), Gaps = 38/216 (17%)
Query: 533 KLLLVGCSGSGTSTIFKQAKILYKAVPFSDDEHENIKLKIQSNAYGYLGILLEGRERFEE 592
KLLL+G SG STI KQ KI+++ +S+DE + K+ + SN + ++ R +
Sbjct: 4 KLLLLGAGESGKSTIVKQMKIIHED-GYSEDECKQYKVVVYSNTIQSIIAIIRAMGRLKI 62
Query: 593 EILGEKRKKQSSDETNPVGSSDSTDGKTIYTIGPRLKAFSDWLLKTMVSGNLEAIFPAAT 652
+ GE ++ + D + ++ +++G+ E T
Sbjct: 63 D-FGE--------------AARADDARQLF----------------VLAGSAEE--GVMT 89
Query: 653 REYSPLVEELWKDAAIQATYSRRSELEMLSSVASYFLERVVDISRTDYEPSDLDILYAEG 712
E + +++ LW+D +QA +SR E + L+ ASY+L + IS+++Y P+ D+L
Sbjct: 90 PELAGVIKRLWRDGGVQACFSRSREYQ-LNDSASYYLNDLDRISQSNYIPTQQDVLRTR- 147
Query: 713 VTSSNGLACVDFSFPRSASDDSVDTADQHDSLLRWV 748
+ G+ F+F + D Q +W+
Sbjct: 148 -VKTTGIVETHFTF-KDLYFKMFDVGGQRSERKKWI 181
>pdb|4G5R|A Chain A, Structure Of Lgn Gl4GALPHAI3 COMPLEX
pdb|4G5R|B Chain B, Structure Of Lgn Gl4GALPHAI3 COMPLEX
pdb|4G5R|C Chain C, Structure Of Lgn Gl4GALPHAI3 COMPLEX
pdb|4G5R|D Chain D, Structure Of Lgn Gl4GALPHAI3 COMPLEX
pdb|4G5S|A Chain A, Structure Of Lgn Gl3GALPHAI3 COMPLEX
pdb|4G5S|B Chain B, Structure Of Lgn Gl3GALPHAI3 COMPLEX
pdb|4G5S|C Chain C, Structure Of Lgn Gl3GALPHAI3 COMPLEX
pdb|4G5S|D Chain D, Structure Of Lgn Gl3GALPHAI3 COMPLEX
Length = 330
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 53/216 (24%), Positives = 99/216 (45%), Gaps = 38/216 (17%)
Query: 533 KLLLVGCSGSGTSTIFKQAKILYKAVPFSDDEHENIKLKIQSNAYGYLGILLEGRERFEE 592
KLLL+G SG STI KQ KI+++ +S+DE + K+ + SN + ++ R +
Sbjct: 11 KLLLLGAGESGKSTIVKQMKIIHED-GYSEDECKQYKVVVYSNTIQSIIAIIRAMGRLKI 69
Query: 593 EILGEKRKKQSSDETNPVGSSDSTDGKTIYTIGPRLKAFSDWLLKTMVSGNLEAIFPAAT 652
+ GE ++ + D + ++ +++G+ E T
Sbjct: 70 D-FGE--------------AARADDARQLF----------------VLAGSAEE--GVMT 96
Query: 653 REYSPLVEELWKDAAIQATYSRRSELEMLSSVASYFLERVVDISRTDYEPSDLDILYAEG 712
E + +++ LW+D +QA +SR E + L+ ASY+L + IS+++Y P+ D+L
Sbjct: 97 PELAGVIKRLWRDGGVQACFSRSREYQ-LNDSASYYLNDLDRISQSNYIPTQQDVLRTR- 154
Query: 713 VTSSNGLACVDFSFPRSASDDSVDTADQHDSLLRWV 748
+ G+ F+F + D Q +W+
Sbjct: 155 -VKTTGIVETHFTF-KDLYFKMFDVGGQRSERKKWI 188
>pdb|1AZS|C Chain C, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase
pdb|1AZT|A Chain A, Gs-Alpha Complexed With Gtp-Gamma-S
pdb|1AZT|B Chain B, Gs-Alpha Complexed With Gtp-Gamma-S
pdb|3C14|C Chain C, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With Pyrophosphate
And Ca
pdb|3C15|C Chain C, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With Pyrophosphate
And Mg
pdb|3C16|C Chain C, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With
Adenosine-5'-Triphosphate And Ca
Length = 402
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 56/220 (25%), Positives = 96/220 (43%), Gaps = 22/220 (10%)
Query: 529 RTLQKLLLVGCSGSGTSTIFKQAKILYKAVPFSDDEHENIKLKIQSNAYGYLGILLEGRE 588
R +LLL+G SG STI KQ +IL+ F+ + E +SN+ G
Sbjct: 38 RATHRLLLLGAGESGKSTIVKQMRILH-VNGFNGEGGEEDPQAARSNSDG---------- 86
Query: 589 RFEEEILGEKRKKQSSDETNPVGSSDSTDGKTIYTIGPRLKAFSDWLLKTMVSGNLEAIF 648
E+ + K + + ++ S + P + D++L M + + F
Sbjct: 87 --EKATKVQDIKNNLKEAIETIVAAMSNLVPPVELANPENQFRVDYILSVMNVPDFD--F 142
Query: 649 PAATREYSPLVEELWKDAAIQATYSRRSELEMLSSVASYFLERVVDISRTDYEPSDLDIL 708
P E+ + LW+D ++A Y R +E +++ A YFL+++ I + DY PSD D+L
Sbjct: 143 PP---EFYEHAKALWEDEGVRACYERSNEYQLID-CAQYFLDKIDVIKQDDYVPSDQDLL 198
Query: 709 YAEGVTSSNGLACVDFSFPRSASDDSVDTADQHDSLLRWV 748
+TS G+ F + + D Q D +W+
Sbjct: 199 RCRVLTS--GIFETKFQVDK-VNFHMFDVGGQRDERRKWI 235
>pdb|1CS4|C Chain C, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With
2'-Deoxy-Adenosine 3'- Monophosphate, Pyrophosphate And
Mg
pdb|1U0H|C Chain C, Structural Basis For The Inhibition Of Mammalian Adenylyl
Cyclase By Mant-gtp
pdb|2GVD|C Chain C, Complex Of Gs- With The Catalytic Domains Of Mammalian
Adenylyl Cyclase: Complex With Tnp-Atp And Mn
pdb|2GVZ|C Chain C, Crystal Structure Of Complex Of Gs- With The Catalytic
Domains Of Mammalian Adenylyl Cyclase: Complex With
Mant- Atp And Mn
pdb|3G82|C Chain C, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With Mant-Itp And Mn
pdb|3MAA|C Chain C, Complex Of Gs-alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With Adenosine
5-o-(l-thiophosphate) And Low Ca Concentration
Length = 394
Score = 57.4 bits (137), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 56/220 (25%), Positives = 97/220 (44%), Gaps = 22/220 (10%)
Query: 529 RTLQKLLLVGCSGSGTSTIFKQAKILYKAVPFSDDEHENIKLKIQSNAYGYLGILLEGRE 588
R +LLL+G SG STI KQ +IL+ F+ + E +SN+ G
Sbjct: 38 RATHRLLLLGAGESGKSTIVKQMRILH-VNGFNGEGGEEDPQAARSNSDG---------- 86
Query: 589 RFEEEILGEKRKKQSSDETNPVGSSDSTDGKTIYTIGPRLKAFSDWLLKTMVSGNLEAIF 648
E+ + K + + ++ S + P + D++L M + + F
Sbjct: 87 --EKATKVQDIKNNLKEAIETIVAAMSNLVPPVELANPENQFRVDYILSVMNVPDFD--F 142
Query: 649 PAATREYSPLVEELWKDAAIQATYSRRSELEMLSSVASYFLERVVDISRTDYEPSDLDIL 708
P E++ + LW+D ++A Y R +E +++ A YFL+++ I + DY PSD D+L
Sbjct: 143 PPEFYEHA---KALWEDEGVRACYERSNEYQLID-CAQYFLDKIDVIKQDDYVPSDQDLL 198
Query: 709 YAEGVTSSNGLACVDFSFPRSASDDSVDTADQHDSLLRWV 748
+TS G+ F + + D Q D +W+
Sbjct: 199 RCRVLTS--GIFETKFQVDK-VNFHMFDVGGQRDERRKWI 235
>pdb|1CJK|C Chain C, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With Adenosine
5'-(Alpha Thio)-Triphosphate (Rp), Mg, And Mn
pdb|1CJT|C Chain C, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With
Beta-L-2',3'-Dideoxyatp, Mn, And Mg
pdb|1CJU|C Chain C, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With
Beta-L-2',3'-Dideoxyatp And Mg
pdb|1CJV|C Chain C, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With
Beta-L-2',3'-Dideoxyatp, Mg, And Zn
pdb|1TL7|C Chain C, Complex Of Gs- With The Catalytic Domains Of Mammalian
Adenylyl Cyclase: Complex With 2'(3')-O-(N-
Methylanthraniloyl)-Guanosine 5'-Triphosphate And Mn
Length = 402
Score = 56.6 bits (135), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 56/220 (25%), Positives = 96/220 (43%), Gaps = 22/220 (10%)
Query: 529 RTLQKLLLVGCSGSGTSTIFKQAKILYKAVPFSDDEHENIKLKIQSNAYGYLGILLEGRE 588
R +LLL+G SG STI KQ +IL+ F+ E +SN+ G
Sbjct: 38 RATHRLLLLGAGESGKSTIVKQMRILH-VNGFNGGEGGEEDPNAKSNSDG---------- 86
Query: 589 RFEEEILGEKRKKQSSDETNPVGSSDSTDGKTIYTIGPRLKAFSDWLLKTMVSGNLEAIF 648
E+ + K + + ++ S + P + D++L M + + F
Sbjct: 87 --EKATKVQDIKNNLKEAIETIVAAMSNLVPPVELANPENQFRVDYILSVMNVPDFD--F 142
Query: 649 PAATREYSPLVEELWKDAAIQATYSRRSELEMLSSVASYFLERVVDISRTDYEPSDLDIL 708
P E++ + LW+D ++A Y R +E +++ A YFL+++ I + DY PSD D+L
Sbjct: 143 PPEFYEHA---KALWEDEGVRACYERSNEYQLID-CAQYFLDKIDVIKQDDYVPSDQDLL 198
Query: 709 YAEGVTSSNGLACVDFSFPRSASDDSVDTADQHDSLLRWV 748
+TS G+ F + + D Q D +W+
Sbjct: 199 RCRVLTS--GIFETKFQVDK-VNFHMFDVGGQRDERRKWI 235
>pdb|3FFA|A Chain A, Crystal Structure Of A Fast Activating G Protein Mutant
pdb|3FFB|A Chain A, Gi-Alpha-1 Mutant In Gdp Bound Form
Length = 360
Score = 56.6 bits (135), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 56/251 (22%), Positives = 112/251 (44%), Gaps = 39/251 (15%)
Query: 499 SLPVPSKSSNPGAEQGSGLMSRSVPDYIERRTLQ-KLLLVGCSGSGTSTIFKQAKILYKA 557
S+ + + A + S ++ R++ + E+ + KLLL+G SG STI KQ KI+++A
Sbjct: 6 SMGCTLSAEDKAAVERSKMIDRNLREDGEKAAREVKLLLLGAGESGKSTIVKQMKIIHEA 65
Query: 558 VPFSDDEHENIKLKIQSNAYGYLGILLEGRERFEEEILGEKRKKQSSDETNPVGSSDSTD 617
+S++E + K + SN + ++ R + + R + D
Sbjct: 66 -GYSEEECKQYKAVVYSNTIQSIIAIIRAMGRLKIDFGDAAR---------------ADD 109
Query: 618 GKTIYTIGPRLKAFSDWLLKTMVSGNLEAIFPAATREYSPLVEELWKDAAIQATYSRRSE 677
+ ++ +++G E F A E + +++ LWKD+ +QA ++R E
Sbjct: 110 ARQLF----------------VLAGAAEEGFMTA--ELAGVIKRLWKDSGVQACFNRSRE 151
Query: 678 LEMLSSVASYFLERVVDISRTDYEPSDLDILYAEGVTSSNGLACVDFSFPRSASDDSVDT 737
+ L+ A+Y+L + I++ +Y P+ D+L + G+ F+F + D
Sbjct: 152 YQ-LNDSAAYYLNDLDRIAQPNYIPTQQDVLRTR--VKTTGIVETHFTF-KDLHFKMFDV 207
Query: 738 ADQHDSLLRWV 748
Q +W+
Sbjct: 208 GGQRSERKKWI 218
>pdb|2ZJY|A Chain A, Structure Of The K349p Mutant Of Gi Alpha 1 Subunit Bound
To Alf4 And Gdp
pdb|2ZJZ|A Chain A, Structure Of The K349p Mutant Of Gi Alpha 1 Subunit Bound
To Gdp
pdb|2ZJZ|B Chain B, Structure Of The K349p Mutant Of Gi Alpha 1 Subunit Bound
To Gdp
Length = 356
Score = 56.6 bits (135), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 55/244 (22%), Positives = 110/244 (45%), Gaps = 39/244 (15%)
Query: 506 SSNPGAEQGSGLMSRSVPDYIERRTLQ-KLLLVGCSGSGTSTIFKQAKILYKAVPFSDDE 564
+ + A + S ++ R++ + E+ + KLLL+G SG STI KQ KI+++A +S++E
Sbjct: 9 AEDKAAVERSKMIDRNLREDGEKAAREVKLLLLGAGESGKSTIVKQMKIIHEA-GYSEEE 67
Query: 565 HENIKLKIQSNAYGYLGILLEGRERFEEEILGEKRKKQSSDETNPVGSSDSTDGKTIYTI 624
+ K + SN + ++ R + + R + D + ++
Sbjct: 68 CKQYKAVVYSNTIQSIIAIIRAMGRLKIDFGDAAR---------------ADDARQLF-- 110
Query: 625 GPRLKAFSDWLLKTMVSGNLEAIFPAATREYSPLVEELWKDAAIQATYSRRSELEMLSSV 684
+++G E F A E + +++ LWKD+ +QA ++R E + L+
Sbjct: 111 --------------VLAGAAEEGFMTA--ELAGVIKRLWKDSGVQACFNRSREYQ-LNDS 153
Query: 685 ASYFLERVVDISRTDYEPSDLDILYAEGVTSSNGLACVDFSFPRSASDDSVDTADQHDSL 744
A+Y+L + I++ +Y P+ D+L + G+ F+F + D Q
Sbjct: 154 AAYYLNDLDRIAQPNYIPTQQDVLRTR--VKTTGIVETHFTF-KDLHFKMFDVGGQRSER 210
Query: 745 LRWV 748
+W+
Sbjct: 211 KKWI 214
>pdb|3ONW|A Chain A, Structure Of A G-Alpha-I1 Mutant With Enhanced Affinity
For The Rgs14 Goloco Motif.
pdb|3ONW|B Chain B, Structure Of A G-Alpha-I1 Mutant With Enhanced Affinity
For The Rgs14 Goloco Motif
Length = 328
Score = 56.2 bits (134), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 52/216 (24%), Positives = 99/216 (45%), Gaps = 38/216 (17%)
Query: 533 KLLLVGCSGSGTSTIFKQAKILYKAVPFSDDEHENIKLKIQSNAYGYLGILLEGRERFEE 592
KLLL+G SG STI KQ KI+++A +S++E + K + SN + ++ R +
Sbjct: 9 KLLLLGAGESGKSTIVKQMKIIHEA-GYSEEECKQYKAVVYSNTIQSIIAIIRAMGRLKI 67
Query: 593 EILGEKRKKQSSDETNPVGSSDSTDGKTIYTIGPRLKAFSDWLLKTMVSGNLEAIFPAAT 652
+ G+ S+ + D + ++ +++G E F A
Sbjct: 68 D-FGD--------------SARADDARQLF----------------VLAGAAEEGFMTA- 95
Query: 653 REYSPLVEELWKDAAIQATYSRRSELEMLSSVASYFLERVVDISRTDYEPSDLDILYAEG 712
E + +++ LWKD+ +QA ++R E +L+ A+Y+L + I++ +Y P+ D+L
Sbjct: 96 -ELAGVIKRLWKDSGVQACFNRSREY-LLNDSAAYYLNDLDRIAQPNYIPTQQDVLRTR- 152
Query: 713 VTSSNGLACVDFSFPRSASDDSVDTADQHDSLLRWV 748
+ G+ F+F + D Q +W+
Sbjct: 153 -VKTTGIVETHFTF-KDLHFKMFDVGGQRSERKKWI 186
>pdb|3UMR|A Chain A, Crystal Structure Of The G202d Mutant Of Human G-Alpha-I1
Length = 354
Score = 56.2 bits (134), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 53/223 (23%), Positives = 107/223 (47%), Gaps = 38/223 (17%)
Query: 506 SSNPGAEQGSGLMSRSVPDYIERRTLQ-KLLLVGCSGSGTSTIFKQAKILYKAVPFSDDE 564
+ + A + S ++ R++ + E+ + KLLL+G SG STI KQ KI+++A +S++E
Sbjct: 7 AEDKAAVERSKMIDRNLREDGEKAAREVKLLLLGAGESGKSTIVKQMKIIHEA-GYSEEE 65
Query: 565 HENIKLKIQSNAYGYLGILLEGRERFEEEILGEKRKKQSSDETNPVGSSDSTDGKTIYTI 624
+ K + SN + ++ R + + G+ S+ + D + ++
Sbjct: 66 CKQYKAVVYSNTIQSIIAIIRAMGRLKID-FGD--------------SARADDARQLF-- 108
Query: 625 GPRLKAFSDWLLKTMVSGNLEAIFPAATREYSPLVEELWKDAAIQATYSRRSELEMLSSV 684
+++G E F A E + +++ LWKD+ +QA ++R E + L+
Sbjct: 109 --------------VLAGAAEEGFMTA--ELAGVIKRLWKDSGVQACFNRSREYQ-LNDS 151
Query: 685 ASYFLERVVDISRTDYEPSDLDILYAEGVTSSNGLACVDFSFP 727
A+Y+L + I++ +Y P+ D+L + G+ F+F
Sbjct: 152 AAYYLNDLDRIAQPNYIPTQQDVLRTR--VKTTGIVETHFTFK 192
>pdb|1KJY|A Chain A, Crystal Structure Of Human G[alpha]i1 Bound To The Goloco
Motif Of Rgs14
pdb|1KJY|C Chain C, Crystal Structure Of Human G[alpha]i1 Bound To The Goloco
Motif Of Rgs14
pdb|2OM2|A Chain A, Crystal Structure Of Human G[alpha]i1 Bound To The Goloco
Motif Of Rgs14
pdb|2OM2|C Chain C, Crystal Structure Of Human G[alpha]i1 Bound To The Goloco
Motif Of Rgs14
Length = 325
Score = 55.8 bits (133), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 52/216 (24%), Positives = 99/216 (45%), Gaps = 38/216 (17%)
Query: 533 KLLLVGCSGSGTSTIFKQAKILYKAVPFSDDEHENIKLKIQSNAYGYLGILLEGRERFEE 592
KLLL+G SG STI KQ KI+++A +S++E + K + SN + ++ R +
Sbjct: 6 KLLLLGAGESGKSTIVKQMKIIHEA-GYSEEECKQYKAVVYSNTIQSIIAIIRAMGRLKI 64
Query: 593 EILGEKRKKQSSDETNPVGSSDSTDGKTIYTIGPRLKAFSDWLLKTMVSGNLEAIFPAAT 652
+ G+ S+ + D + ++ +++G E F A
Sbjct: 65 D-FGD--------------SARADDARQLF----------------VLAGAAEEGFMTA- 92
Query: 653 REYSPLVEELWKDAAIQATYSRRSELEMLSSVASYFLERVVDISRTDYEPSDLDILYAEG 712
E + +++ LWKD+ +QA ++R E + L+ A+Y+L + I++ +Y P+ D+L
Sbjct: 93 -ELAGVIKRLWKDSGVQACFNRSREYQ-LNDSAAYYLNDLDRIAQPNYIPTQQDVLRTR- 149
Query: 713 VTSSNGLACVDFSFPRSASDDSVDTADQHDSLLRWV 748
+ G+ F+F + D Q +W+
Sbjct: 150 -VKTTGIVETHFTF-KDLHFKMFDVGGQRSERKKWI 183
>pdb|3SN6|A Chain A, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs
Protein Complex
Length = 380
Score = 55.8 bits (133), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 56/221 (25%), Positives = 98/221 (44%), Gaps = 38/221 (17%)
Query: 529 RTLQKLLLVGCSGSGTSTIFKQAKILYKAVPFSDDEHENIKLK-IQSNAYGYLGILLEGR 587
R +LLL+G SG STI KQ +IL+ F+ D + K++ I++N + ++
Sbjct: 38 RATHRLLLLGAGESGKSTIVKQMRILH-VNGFNGDSEKATKVQDIKNNLKEAIETIVAA- 95
Query: 588 ERFEEEILGEKRKKQSSDETNPVGSSDSTDGKTIYTIGPRLKAFSDWLLKTMVSGNLEAI 647
S+ PV ++ P + D++L M + +
Sbjct: 96 ---------------MSNLVPPVELAN-----------PENQFRVDYILSVMNVPDFD-- 127
Query: 648 FPAATREYSPLVEELWKDAAIQATYSRRSELEMLSSVASYFLERVVDISRTDYEPSDLDI 707
FP E++ + LW+D ++A Y R +E +++ A YFL+++ I + DY PSD D+
Sbjct: 128 FPPEFYEHA---KALWEDEGVRACYERSNEYQLIDC-AQYFLDKIDVIKQDDYVPSDQDL 183
Query: 708 LYAEGVTSSNGLACVDFSFPRSASDDSVDTADQHDSLLRWV 748
L +TS G+ F + + D Q D +W+
Sbjct: 184 LRCRVLTS--GIFETKFQVDK-VNFHMFDVGGQRDERRKWI 221
>pdb|2XNS|A Chain A, Crystal Structure Of Human G Alpha I1 Bound To A Designed
Helical Peptide Derived From The Goloco Motif Of Rgs14
pdb|2XNS|B Chain B, Crystal Structure Of Human G Alpha I1 Bound To A Designed
Helical Peptide Derived From The Goloco Motif Of Rgs14
Length = 327
Score = 55.8 bits (133), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 52/216 (24%), Positives = 99/216 (45%), Gaps = 38/216 (17%)
Query: 533 KLLLVGCSGSGTSTIFKQAKILYKAVPFSDDEHENIKLKIQSNAYGYLGILLEGRERFEE 592
KLLL+G SG STI KQ KI+++A +S++E + K + SN + ++ R +
Sbjct: 8 KLLLLGAGESGKSTIVKQMKIIHEA-GYSEEECKQYKAVVYSNTIQSIIAIIRAMGRLKI 66
Query: 593 EILGEKRKKQSSDETNPVGSSDSTDGKTIYTIGPRLKAFSDWLLKTMVSGNLEAIFPAAT 652
+ G+ S+ + D + ++ +++G E F A
Sbjct: 67 D-FGD--------------SARADDARQLF----------------VLAGAAEEGFMTA- 94
Query: 653 REYSPLVEELWKDAAIQATYSRRSELEMLSSVASYFLERVVDISRTDYEPSDLDILYAEG 712
E + +++ LWKD+ +QA ++R E + L+ A+Y+L + I++ +Y P+ D+L
Sbjct: 95 -ELAGVIKRLWKDSGVQACFNRSREYQ-LNDSAAYYLNDLDRIAQPNYIPTQQDVLRTR- 151
Query: 713 VTSSNGLACVDFSFPRSASDDSVDTADQHDSLLRWV 748
+ G+ F+F + D Q +W+
Sbjct: 152 -VKTTGIVETHFTF-KDLHFKMFDVGGQRSERKKWI 185
>pdb|1GP2|A Chain A, G Protein Heterotrimer Gi_alpha_1 Beta_1 Gamma_2 With Gdp
Bound
pdb|1AGR|A Chain A, Complex Of Alf4-Activated Gi-Alpha-1 With Rgs4
pdb|1AGR|D Chain D, Complex Of Alf4-Activated Gi-Alpha-1 With Rgs4
pdb|1CIP|A Chain A, Gi-Alpha-1 Subunit Of Guanine Nucleotide-Binding Protein
Complexed With A Gtp Analogue
pdb|1BOF|A Chain A, Gi-Alpha-1 Bound To Gdp And Magnesium
pdb|1GDD|A Chain A, Tertiary And Quaternary Structural Changes In Gia1 Induced
By Gtp Hydrolysis
pdb|1GFI|A Chain A, Structures Of Active Conformations Of Gi Alpha 1 And The
Mechanism Of Gtp Hydrolysis
pdb|1GIA|A Chain A, Structure Of Active Conformations Of Gia1 And The
Mechanism Of Gtp Hydrolysis
Length = 353
Score = 55.8 bits (133), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 55/244 (22%), Positives = 110/244 (45%), Gaps = 39/244 (15%)
Query: 506 SSNPGAEQGSGLMSRSVPDYIERRTLQ-KLLLVGCSGSGTSTIFKQAKILYKAVPFSDDE 564
+ + A + S ++ R++ + E+ + KLLL+G SG STI KQ KI+++A +S++E
Sbjct: 6 AEDKAAVERSKMIDRNLREDGEKAAREVKLLLLGAGESGKSTIVKQMKIIHEA-GYSEEE 64
Query: 565 HENIKLKIQSNAYGYLGILLEGRERFEEEILGEKRKKQSSDETNPVGSSDSTDGKTIYTI 624
+ K + SN + ++ R + + R + D + ++
Sbjct: 65 CKQYKAVVYSNTIQSIIAIIRAMGRLKIDFGDAAR---------------ADDARQLF-- 107
Query: 625 GPRLKAFSDWLLKTMVSGNLEAIFPAATREYSPLVEELWKDAAIQATYSRRSELEMLSSV 684
+++G E F A E + +++ LWKD+ +QA ++R E + L+
Sbjct: 108 --------------VLAGAAEEGFMTA--ELAGVIKRLWKDSGVQACFNRSREYQ-LNDS 150
Query: 685 ASYFLERVVDISRTDYEPSDLDILYAEGVTSSNGLACVDFSFPRSASDDSVDTADQHDSL 744
A+Y+L + I++ +Y P+ D+L + G+ F+F + D Q
Sbjct: 151 AAYYLNDLDRIAQPNYIPTQQDVLRTR--VKTTGIVETHFTF-KDLHFKMFDVGGQRSER 207
Query: 745 LRWV 748
+W+
Sbjct: 208 KKWI 211
>pdb|2GTP|A Chain A, Crystal Structure Of The Heterodimeric Complex Of Human
Rgs1 And Activated Gi Alpha 1
pdb|2GTP|B Chain B, Crystal Structure Of The Heterodimeric Complex Of Human
Rgs1 And Activated Gi Alpha 1
Length = 323
Score = 55.8 bits (133), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 52/216 (24%), Positives = 99/216 (45%), Gaps = 38/216 (17%)
Query: 533 KLLLVGCSGSGTSTIFKQAKILYKAVPFSDDEHENIKLKIQSNAYGYLGILLEGRERFEE 592
KLLL+G SG STI KQ KI+++A +S++E + K + SN + ++ R +
Sbjct: 4 KLLLLGAGESGKSTIVKQMKIIHEA-GYSEEECKQYKAVVYSNTIQSIIAIIRAMGRLKI 62
Query: 593 EILGEKRKKQSSDETNPVGSSDSTDGKTIYTIGPRLKAFSDWLLKTMVSGNLEAIFPAAT 652
+ G+ S+ + D + ++ +++G E F A
Sbjct: 63 D-FGD--------------SARADDARQLF----------------VLAGAAEEGFMTA- 90
Query: 653 REYSPLVEELWKDAAIQATYSRRSELEMLSSVASYFLERVVDISRTDYEPSDLDILYAEG 712
E + +++ LWKD+ +QA ++R E + L+ A+Y+L + I++ +Y P+ D+L
Sbjct: 91 -ELAGVIKRLWKDSGVQACFNRSREYQ-LNDSAAYYLNDLDRIAQPNYIPTQQDVLRTR- 147
Query: 713 VTSSNGLACVDFSFPRSASDDSVDTADQHDSLLRWV 748
+ G+ F+F + D Q +W+
Sbjct: 148 -VKTTGIVETHFTF-KDLHFKMFDVGGQRSERKKWI 181
>pdb|3QI2|A Chain A, A Galpha P-Loop Mutation Prevents Transition To The
Activated State: G42r Bound To Rgs14 Goloco
pdb|3QI2|B Chain B, A Galpha P-Loop Mutation Prevents Transition To The
Activated State: G42r Bound To Rgs14 Goloco
Length = 328
Score = 55.8 bits (133), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 52/216 (24%), Positives = 99/216 (45%), Gaps = 38/216 (17%)
Query: 533 KLLLVGCSGSGTSTIFKQAKILYKAVPFSDDEHENIKLKIQSNAYGYLGILLEGRERFEE 592
KLLL+G SG STI KQ KI+++A +S++E + K + SN + ++ R +
Sbjct: 9 KLLLLGARESGKSTIVKQMKIIHEA-GYSEEECKQYKAVVYSNTIQSIIAIIRAMGRLKI 67
Query: 593 EILGEKRKKQSSDETNPVGSSDSTDGKTIYTIGPRLKAFSDWLLKTMVSGNLEAIFPAAT 652
+ G+ S+ + D + ++ +++G E F A
Sbjct: 68 D-FGD--------------SARADDARQLF----------------VLAGAAEEGFMTA- 95
Query: 653 REYSPLVEELWKDAAIQATYSRRSELEMLSSVASYFLERVVDISRTDYEPSDLDILYAEG 712
E + +++ LWKD+ +QA ++R E + L+ A+Y+L + I++ +Y P+ D+L
Sbjct: 96 -ELAGVIKRLWKDSGVQACFNRSREYQ-LNDSAAYYLNDLDRIAQPNYIPTQQDVLRTR- 152
Query: 713 VTSSNGLACVDFSFPRSASDDSVDTADQHDSLLRWV 748
+ G+ F+F + D Q +W+
Sbjct: 153 -VKTTGIVETHFTF-KDLHFKMFDVGGQRSERKKWI 186
>pdb|2IK8|A Chain A, Crystal Structure Of The Heterodimeric Complex Of Human
Rgs16 And Activated Gi Alpha 1
pdb|2IK8|C Chain C, Crystal Structure Of The Heterodimeric Complex Of Human
Rgs16 And Activated Gi Alpha 1
Length = 324
Score = 55.8 bits (133), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 52/216 (24%), Positives = 99/216 (45%), Gaps = 38/216 (17%)
Query: 533 KLLLVGCSGSGTSTIFKQAKILYKAVPFSDDEHENIKLKIQSNAYGYLGILLEGRERFEE 592
KLLL+G SG STI KQ KI+++A +S++E + K + SN + ++ R +
Sbjct: 5 KLLLLGAGESGKSTIVKQMKIIHEA-GYSEEECKQYKAVVYSNTIQSIIAIIRAMGRLKI 63
Query: 593 EILGEKRKKQSSDETNPVGSSDSTDGKTIYTIGPRLKAFSDWLLKTMVSGNLEAIFPAAT 652
+ G+ S+ + D + ++ +++G E F A
Sbjct: 64 D-FGD--------------SARADDARQLF----------------VLAGAAEEGFMTA- 91
Query: 653 REYSPLVEELWKDAAIQATYSRRSELEMLSSVASYFLERVVDISRTDYEPSDLDILYAEG 712
E + +++ LWKD+ +QA ++R E + L+ A+Y+L + I++ +Y P+ D+L
Sbjct: 92 -ELAGVIKRLWKDSGVQACFNRSREYQ-LNDSAAYYLNDLDRIAQPNYIPTQQDVLRTR- 148
Query: 713 VTSSNGLACVDFSFPRSASDDSVDTADQHDSLLRWV 748
+ G+ F+F + D Q +W+
Sbjct: 149 -VKTTGIVETHFTF-KDLHFKMFDVGGQRSERKKWI 182
>pdb|1Y3A|A Chain A, Structure Of G-Alpha-I1 Bound To A Gdp-Selective Peptide
Provides Insight Into Guanine Nucleotide Exchange
pdb|1Y3A|B Chain B, Structure Of G-Alpha-I1 Bound To A Gdp-Selective Peptide
Provides Insight Into Guanine Nucleotide Exchange
pdb|1Y3A|C Chain C, Structure Of G-Alpha-I1 Bound To A Gdp-Selective Peptide
Provides Insight Into Guanine Nucleotide Exchange
pdb|1Y3A|D Chain D, Structure Of G-Alpha-I1 Bound To A Gdp-Selective Peptide
Provides Insight Into Guanine Nucleotide Exchange
Length = 329
Score = 55.8 bits (133), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 52/216 (24%), Positives = 99/216 (45%), Gaps = 38/216 (17%)
Query: 533 KLLLVGCSGSGTSTIFKQAKILYKAVPFSDDEHENIKLKIQSNAYGYLGILLEGRERFEE 592
KLLL+G SG STI KQ KI+++A +S++E + K + SN + ++ R +
Sbjct: 10 KLLLLGAGESGKSTIVKQMKIIHEA-GYSEEECKQYKAVVYSNTIQSIIAIIRAMGRLKI 68
Query: 593 EILGEKRKKQSSDETNPVGSSDSTDGKTIYTIGPRLKAFSDWLLKTMVSGNLEAIFPAAT 652
+ G+ S+ + D + ++ +++G E F A
Sbjct: 69 D-FGD--------------SARADDARQLF----------------VLAGAAEEGFMTA- 96
Query: 653 REYSPLVEELWKDAAIQATYSRRSELEMLSSVASYFLERVVDISRTDYEPSDLDILYAEG 712
E + +++ LWKD+ +QA ++R E + L+ A+Y+L + I++ +Y P+ D+L
Sbjct: 97 -ELAGVIKRLWKDSGVQACFNRSREYQ-LNDSAAYYLNDLDRIAQPNYIPTQQDVLRTR- 153
Query: 713 VTSSNGLACVDFSFPRSASDDSVDTADQHDSLLRWV 748
+ G+ F+F + D Q +W+
Sbjct: 154 -VKTTGIVETHFTF-KDLHFKMFDVGGQRSERKKWI 187
>pdb|4G5Q|A Chain A, Structure Of Lgn Gl4GALPHAI1 COMPLEX
pdb|4G5Q|B Chain B, Structure Of Lgn Gl4GALPHAI1 COMPLEX
pdb|4G5Q|C Chain C, Structure Of Lgn Gl4GALPHAI1 COMPLEX
pdb|4G5Q|D Chain D, Structure Of Lgn Gl4GALPHAI1 COMPLEX
Length = 330
Score = 55.8 bits (133), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 52/216 (24%), Positives = 99/216 (45%), Gaps = 38/216 (17%)
Query: 533 KLLLVGCSGSGTSTIFKQAKILYKAVPFSDDEHENIKLKIQSNAYGYLGILLEGRERFEE 592
KLLL+G SG STI KQ KI+++A +S++E + K + SN + ++ R +
Sbjct: 11 KLLLLGAGESGKSTIVKQMKIIHEA-GYSEEECKQYKAVVYSNTIQSIIAIIRAMGRLKI 69
Query: 593 EILGEKRKKQSSDETNPVGSSDSTDGKTIYTIGPRLKAFSDWLLKTMVSGNLEAIFPAAT 652
+ G+ S+ + D + ++ +++G E F A
Sbjct: 70 D-FGD--------------SARADDARQLF----------------VLAGAAEEGFMTA- 97
Query: 653 REYSPLVEELWKDAAIQATYSRRSELEMLSSVASYFLERVVDISRTDYEPSDLDILYAEG 712
E + +++ LWKD+ +QA ++R E + L+ A+Y+L + I++ +Y P+ D+L
Sbjct: 98 -ELAGVIKRLWKDSGVQACFNRSREYQ-LNDSAAYYLNDLDRIAQPNYIPTQQDVLRTR- 154
Query: 713 VTSSNGLACVDFSFPRSASDDSVDTADQHDSLLRWV 748
+ G+ F+F + D Q +W+
Sbjct: 155 -VKTTGIVETHFTF-KDLHFKMFDVGGQRSERKKWI 188
>pdb|1GG2|A Chain A, G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Beta_1
Gamma_2 With Gdp Bound
pdb|1GIT|A Chain A, Structure Of Gtp-Binding Protein
Length = 353
Score = 55.5 bits (132), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 55/244 (22%), Positives = 110/244 (45%), Gaps = 39/244 (15%)
Query: 506 SSNPGAEQGSGLMSRSVPDYIERRTLQ-KLLLVGCSGSGTSTIFKQAKILYKAVPFSDDE 564
+ + A + S ++ R++ + E+ + KLLL+G SG STI KQ KI+++A +S++E
Sbjct: 6 AEDKAAVERSKMIDRNLREDGEKAAREVKLLLLGAGESGKSTIVKQMKIIHEA-GYSEEE 64
Query: 565 HENIKLKIQSNAYGYLGILLEGRERFEEEILGEKRKKQSSDETNPVGSSDSTDGKTIYTI 624
+ K + SN + ++ R + + R + D + ++
Sbjct: 65 CKQYKAVVYSNTIQSIIAIIRAMGRLKIDFGDAAR---------------ADDARQLF-- 107
Query: 625 GPRLKAFSDWLLKTMVSGNLEAIFPAATREYSPLVEELWKDAAIQATYSRRSELEMLSSV 684
+++G E F A E + +++ LWKD+ +QA ++R E + L+
Sbjct: 108 --------------VLAGAAEEGFMTA--ELAGVIKRLWKDSGVQACFNRSREYQ-LNDS 150
Query: 685 ASYFLERVVDISRTDYEPSDLDILYAEGVTSSNGLACVDFSFPRSASDDSVDTADQHDSL 744
A+Y+L + I++ +Y P+ D+L + G+ F+F + D Q
Sbjct: 151 AAYYLNDLDRIAQPNYIPTQQDVLRTR--VKTTGIVETHFTF-KDLHFKMFDVGAQRSER 207
Query: 745 LRWV 748
+W+
Sbjct: 208 KKWI 211
>pdb|3QE0|A Chain A, A Galpha-I1 P-Loop Mutation Prevents Transition To The
Activated State
pdb|3QE0|B Chain B, A Galpha-I1 P-Loop Mutation Prevents Transition To The
Activated State
pdb|3QE0|C Chain C, A Galpha-I1 P-Loop Mutation Prevents Transition To The
Activated State
Length = 325
Score = 55.5 bits (132), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 52/216 (24%), Positives = 99/216 (45%), Gaps = 38/216 (17%)
Query: 533 KLLLVGCSGSGTSTIFKQAKILYKAVPFSDDEHENIKLKIQSNAYGYLGILLEGRERFEE 592
KLLL+G SG STI KQ KI+++A +S++E + K + SN + ++ R +
Sbjct: 6 KLLLLGARESGKSTIVKQMKIIHEA-GYSEEECKQYKAVVYSNTIQSIIAIIRAMGRLKI 64
Query: 593 EILGEKRKKQSSDETNPVGSSDSTDGKTIYTIGPRLKAFSDWLLKTMVSGNLEAIFPAAT 652
+ G+ S+ + D + ++ +++G E F A
Sbjct: 65 D-FGD--------------SARADDARQLF----------------VLAGAAEEGFMTA- 92
Query: 653 REYSPLVEELWKDAAIQATYSRRSELEMLSSVASYFLERVVDISRTDYEPSDLDILYAEG 712
E + +++ LWKD+ +QA ++R E + L+ A+Y+L + I++ +Y P+ D+L
Sbjct: 93 -ELAGVIKRLWKDSGVQACFNRSREYQ-LNDSAAYYLNDLDRIAQPNYIPTQQDVLRTR- 149
Query: 713 VTSSNGLACVDFSFPRSASDDSVDTADQHDSLLRWV 748
+ G+ F+F + D Q +W+
Sbjct: 150 -VKTTGIVETHFTF-KDLHFKMFDVGGQRSERKKWI 183
>pdb|2G83|A Chain A, Structure Of Activated G-alpha-i1 Bound To A Nucleotide-
State-selective Peptide: Minimal Determinants For
Recognizing The Active Form Of A G Protein Alpha Subunit
pdb|2G83|B Chain B, Structure Of Activated G-alpha-i1 Bound To A Nucleotide-
State-selective Peptide: Minimal Determinants For
Recognizing The Active Form Of A G Protein Alpha Subunit
Length = 313
Score = 55.5 bits (132), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 52/216 (24%), Positives = 99/216 (45%), Gaps = 38/216 (17%)
Query: 533 KLLLVGCSGSGTSTIFKQAKILYKAVPFSDDEHENIKLKIQSNAYGYLGILLEGRERFEE 592
KLLL+G SG STI KQ KI+++A +S++E + K + SN + ++ R +
Sbjct: 3 KLLLLGAGESGKSTIVKQMKIIHEA-GYSEEECKQYKAVVYSNTIQSIIAIIRAMGRLKI 61
Query: 593 EILGEKRKKQSSDETNPVGSSDSTDGKTIYTIGPRLKAFSDWLLKTMVSGNLEAIFPAAT 652
+ G+ S+ + D + ++ +++G E F A
Sbjct: 62 D-FGD--------------SARADDARQLF----------------VLAGAAEEGFMTA- 89
Query: 653 REYSPLVEELWKDAAIQATYSRRSELEMLSSVASYFLERVVDISRTDYEPSDLDILYAEG 712
E + +++ LWKD+ +QA ++R E + L+ A+Y+L + I++ +Y P+ D+L
Sbjct: 90 -ELAGVIKRLWKDSGVQACFNRSREYQ-LNDSAAYYLNDLDRIAQPNYIPTQQDVLRTR- 146
Query: 713 VTSSNGLACVDFSFPRSASDDSVDTADQHDSLLRWV 748
+ G+ F+F + D Q +W+
Sbjct: 147 -VKTTGIVETHFTF-KDLHFKMFDVGGQRSERKKWI 180
>pdb|1CUL|C Chain C, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With
2',5'-Dideoxy-Adenosine 3'- Triphosphate And Mg
Length = 380
Score = 55.5 bits (132), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 56/221 (25%), Positives = 98/221 (44%), Gaps = 38/221 (17%)
Query: 529 RTLQKLLLVGCSGSGTSTIFKQAKILYKAVPFSDDEHENIKLK-IQSNAYGYLGILLEGR 587
R +LLL+G SG STI KQ +IL+ F+ D + K++ I++N + ++
Sbjct: 38 RATHRLLLLGAGESGKSTIVKQMRILH-VNGFNGDGEKATKVQDIKNNLKEAIETIVAA- 95
Query: 588 ERFEEEILGEKRKKQSSDETNPVGSSDSTDGKTIYTIGPRLKAFSDWLLKTMVSGNLEAI 647
S+ PV ++ P + D++L M + +
Sbjct: 96 ---------------MSNLVPPVELAN-----------PENQFRVDYILSVMNVPDFD-- 127
Query: 648 FPAATREYSPLVEELWKDAAIQATYSRRSELEMLSSVASYFLERVVDISRTDYEPSDLDI 707
FP E++ + LW+D ++A Y R +E +++ A YFL+++ I + DY PSD D+
Sbjct: 128 FPPEFYEHA---KALWEDEGVRACYERSNEYQLIDC-AQYFLDKIDVIKQDDYVPSDQDL 183
Query: 708 LYAEGVTSSNGLACVDFSFPRSASDDSVDTADQHDSLLRWV 748
L +TS G+ F + + D Q D +W+
Sbjct: 184 LRCRVLTS--GIFETKFQVDK-VNFHMFDVGGQRDERRKWI 221
>pdb|1AS0|A Chain A, Gtp-Gamma-S Bound G42v Gia1
pdb|1AS2|A Chain A, Gdp+pi Bound G42v Gia1
pdb|1AS3|A Chain A, Gdp Bound G42v Gia1
Length = 353
Score = 55.5 bits (132), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 55/244 (22%), Positives = 110/244 (45%), Gaps = 39/244 (15%)
Query: 506 SSNPGAEQGSGLMSRSVPDYIERRTLQ-KLLLVGCSGSGTSTIFKQAKILYKAVPFSDDE 564
+ + A + S ++ R++ + E+ + KLLL+G SG STI KQ KI+++A +S++E
Sbjct: 6 AEDKAAVERSKMIDRNLREDGEKAAREVKLLLLGAVESGKSTIVKQMKIIHEA-GYSEEE 64
Query: 565 HENIKLKIQSNAYGYLGILLEGRERFEEEILGEKRKKQSSDETNPVGSSDSTDGKTIYTI 624
+ K + SN + ++ R + + R + D + ++
Sbjct: 65 CKQYKAVVYSNTIQSIIAIIRAMGRLKIDFGDAAR---------------ADDARQLF-- 107
Query: 625 GPRLKAFSDWLLKTMVSGNLEAIFPAATREYSPLVEELWKDAAIQATYSRRSELEMLSSV 684
+++G E F A E + +++ LWKD+ +QA ++R E + L+
Sbjct: 108 --------------VLAGAAEEGFMTA--ELAGVIKRLWKDSGVQACFNRSREYQ-LNDS 150
Query: 685 ASYFLERVVDISRTDYEPSDLDILYAEGVTSSNGLACVDFSFPRSASDDSVDTADQHDSL 744
A+Y+L + I++ +Y P+ D+L + G+ F+F + D Q
Sbjct: 151 AAYYLNDLDRIAQPNYIPTQQDVLRTR--VKTTGIVETHFTF-KDLHFKMFDVGGQRSER 207
Query: 745 LRWV 748
+W+
Sbjct: 208 KKWI 211
>pdb|3C7K|A Chain A, Molecular Architecture Of Galphao And The Structural Basis
For Rgs16-Mediated Deactivation
pdb|3C7K|C Chain C, Molecular Architecture Of Galphao And The Structural Basis
For Rgs16-Mediated Deactivation
Length = 333
Score = 55.5 bits (132), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 57/219 (26%), Positives = 93/219 (42%), Gaps = 43/219 (19%)
Query: 533 KLLLVGCSGSGTSTIFKQAKILYKAVPFSDDEHENIKLKIQSNAYGYLGILLEGRERFEE 592
KLLL+G SG STI KQ KI+++ FS ++ + K + SN L ++ +
Sbjct: 14 KLLLLGAGESGKSTIVKQMKIIHED-GFSGEDVKQYKPVVYSNTIQSLAAIVRAMDTLGV 72
Query: 593 EILGEKRKKQSSDETNPVGSSDSTDGKTIYTIGPRLKA---FSDWLLKTMVSGNLEAIFP 649
E G+K +K TD K + + R++ FS LL M+
Sbjct: 73 E-YGDKERK--------------TDSKMVCDVVSRMEDTEPFSAELLSAMM--------- 108
Query: 650 AATREYSPLVEELWKDAAIQATYSRRSELEMLSSVASYFLERVVDISRTDYEPSDLDILY 709
LW D+ IQ ++R E + L+ A Y+L+ + I DY+P++ DIL
Sbjct: 109 -----------RLWGDSGIQECFNRSREYQ-LNDSAKYYLDSLDRIGAGDYQPTEQDILR 156
Query: 710 AEGVTSSNGLACVDFSFPRSASDDSVDTADQHDSLLRWV 748
+ G+ F+F ++ D Q +W+
Sbjct: 157 TR--VKTTGIVETHFTF-KNLHFRLFDVGGQRSERKKWI 192
>pdb|1SVK|A Chain A, Structure Of The K180p Mutant Of Gi Alpha Subunit Bound To
Alf4 And Gdp
pdb|1SVS|A Chain A, Structure Of The K180p Mutant Of Gi Alpha Subunit Bound To
Gppnhp
Length = 353
Score = 55.5 bits (132), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 56/244 (22%), Positives = 111/244 (45%), Gaps = 39/244 (15%)
Query: 506 SSNPGAEQGSGLMSRSVPDYIERRTLQ-KLLLVGCSGSGTSTIFKQAKILYKAVPFSDDE 564
+ + A + S ++ R++ + E+ + KLLL+G SG STI KQ KI+++A +S++E
Sbjct: 6 AEDKAAVERSKMIDRNLREDGEKAAREVKLLLLGAGESGKSTIVKQMKIIHEA-GYSEEE 64
Query: 565 HENIKLKIQSNAYGYLGILLEGRERFEEEILGEKRKKQSSDETNPVGSSDSTDGKTIYTI 624
+ K + SN + ++ R + + R + D + ++
Sbjct: 65 CKQYKAVVYSNTIQSIIAIIRAMGRLKIDFGDAAR---------------ADDARQLF-- 107
Query: 625 GPRLKAFSDWLLKTMVSGNLEAIFPAATREYSPLVEELWKDAAIQATYSRRSELEMLSSV 684
+++G E F A E + +++ LWKD+ +QA ++R E + L+
Sbjct: 108 --------------VLAGAAEEGFMTA--ELAGVIKRLWKDSGVQACFNRSREYQ-LNDS 150
Query: 685 ASYFLERVVDISRTDYEPSDLDILYAEGVTSSNGLACVDFSFPRSASDDSVDTADQHDSL 744
A+Y+L + I++ +Y P+ D+L T+ G+ F+F + D Q
Sbjct: 151 AAYYLNDLDRIAQPNYIPTQQDVLRTRVPTT--GIVETHFTF-KDLHFKMFDVGGQRSER 207
Query: 745 LRWV 748
+W+
Sbjct: 208 KKWI 211
>pdb|1GIL|A Chain A, Structure Of Active Conformations Of Gia1 And The
Mechanism Of Gtp Hydrolysis
Length = 353
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 52/223 (23%), Positives = 104/223 (46%), Gaps = 38/223 (17%)
Query: 506 SSNPGAEQGSGLMSRSVPDYIERRTLQ-KLLLVGCSGSGTSTIFKQAKILYKAVPFSDDE 564
+ + A + S ++ R++ + E+ + KLLL+G SG STI KQ KI+++A +S++E
Sbjct: 6 AEDKAAVERSKMIDRNLREDGEKAAREVKLLLLGAGESGKSTIVKQMKIIHEA-GYSEEE 64
Query: 565 HENIKLKIQSNAYGYLGILLEGRERFEEEILGEKRKKQSSDETNPVGSSDSTDGKTIYTI 624
+ K + SN + ++ R + + R + D + ++
Sbjct: 65 CKQYKAVVYSNTIQSIIAIIRAMGRLKIDFGDAAR---------------ADDARQLF-- 107
Query: 625 GPRLKAFSDWLLKTMVSGNLEAIFPAATREYSPLVEELWKDAAIQATYSRRSELEMLSSV 684
+++G E F A E + +++ LWKD+ +QA ++R E + L+
Sbjct: 108 --------------VLAGAAEEGFMTA--ELAGVIKRLWKDSGVQACFNRSREYQ-LNDS 150
Query: 685 ASYFLERVVDISRTDYEPSDLDILYAEGVTSSNGLACVDFSFP 727
A+Y+L + I++ +Y P+ D+L + G+ F+F
Sbjct: 151 AAYYLNDLDRIAQPNYIPTQQDVLRTR--VKTTGIVETHFTFK 191
>pdb|3D7M|A Chain A, Crystal Structure Of The G Protein Fast-Exchange Double
Mutant I56cQ333C
Length = 354
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 55/244 (22%), Positives = 109/244 (44%), Gaps = 39/244 (15%)
Query: 506 SSNPGAEQGSGLMSRSVPDYIERRTLQ-KLLLVGCSGSGTSTIFKQAKILYKAVPFSDDE 564
+ + A + S ++ R++ + E+ + KLLL+G SG STI KQ KI ++A +S++E
Sbjct: 7 AEDKAAVERSKMIDRNLREDGEKAAREVKLLLLGAGESGKSTIVKQMKICHEA-GYSEEE 65
Query: 565 HENIKLKIQSNAYGYLGILLEGRERFEEEILGEKRKKQSSDETNPVGSSDSTDGKTIYTI 624
+ K + SN + ++ R + + R + D + ++
Sbjct: 66 CKQYKAVVYSNTIQSIIAIIRAMGRLKIDFGDAAR---------------ADDARQLF-- 108
Query: 625 GPRLKAFSDWLLKTMVSGNLEAIFPAATREYSPLVEELWKDAAIQATYSRRSELEMLSSV 684
+++G E F A E + +++ LWKD+ +QA ++R E + L+
Sbjct: 109 --------------VLAGAAEEGFMTA--ELAGVIKRLWKDSGVQACFNRSREYQ-LNDS 151
Query: 685 ASYFLERVVDISRTDYEPSDLDILYAEGVTSSNGLACVDFSFPRSASDDSVDTADQHDSL 744
A+Y+L + I++ +Y P+ D+L + G+ F+F + D Q
Sbjct: 152 AAYYLNDLDRIAQPNYIPTQQDVLRTR--VKTTGIVETHFTF-KDLHFKMFDVGGQRSER 208
Query: 745 LRWV 748
+W+
Sbjct: 209 KKWI 212
>pdb|1BH2|A Chain A, A326s Mutant Of An Inhibitory Alpha Subunit
Length = 315
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 51/216 (23%), Positives = 96/216 (44%), Gaps = 38/216 (17%)
Query: 533 KLLLVGCSGSGTSTIFKQAKILYKAVPFSDDEHENIKLKIQSNAYGYLGILLEGRERFEE 592
KLLL+G SG STI KQ KI+++A +S++E + K + SN + ++ R +
Sbjct: 4 KLLLLGAGESGKSTIVKQMKIIHEA-GYSEEECKQYKAVVYSNTIQSIIAIIRAMGRLKI 62
Query: 593 EILGEKRKKQSSDETNPVGSSDSTDGKTIYTIGPRLKAFSDWLLKTMVSGNLEAIFPAAT 652
+ R + D + ++ +++G E F A
Sbjct: 63 DFGDAAR---------------ADDARQLF----------------VLAGAAEEGFMTA- 90
Query: 653 REYSPLVEELWKDAAIQATYSRRSELEMLSSVASYFLERVVDISRTDYEPSDLDILYAEG 712
E + +++ LWKD+ +QA ++R E + L+ A+Y+L + I++ +Y P+ D+L
Sbjct: 91 -ELAGVIKRLWKDSGVQACFNRSREYQ-LNDSAAYYLNDLDRIAQPNYIPTQQDVLRTR- 147
Query: 713 VTSSNGLACVDFSFPRSASDDSVDTADQHDSLLRWV 748
+ G+ F+F + D Q +W+
Sbjct: 148 -VKTTGIVETHFTF-KDLHFKMFDVGGQRSERKKWI 181
>pdb|3V00|C Chain C, Studies Of A Constitutively Active G-Alpha Subunit Provide
Insights Into The Mechanism Of G Protein Activation.
pdb|3V00|B Chain B, Studies Of A Constitutively Active G-Alpha Subunit Provide
Insights Into The Mechanism Of G Protein Activation.
pdb|3V00|A Chain A, Studies Of A Constitutively Active G-Alpha Subunit Provide
Insights Into The Mechanism Of G Protein Activation
Length = 356
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 52/217 (23%), Positives = 91/217 (41%), Gaps = 40/217 (18%)
Query: 533 KLLLVGCSGSGTSTIFKQAKILYKAVPFSDDE-HENIKLKIQSNAYGYLGILLEGRERFE 591
KLLL+G SG STI KQ KI+++ P+S +E E I + + L I+
Sbjct: 37 KLLLLGAGESGKSTIVKQMKIIHQD-PYSLEECLEFIAIIYGNTLQSILAIV-------- 87
Query: 592 EEILGEKRKKQSSDETNPVGSSDSTDGKTIYTIGPRLKAFSDWLLKTMVSGNLEAIFPAA 651
+ ++ S+ D + + + ++ E P
Sbjct: 88 --------RAMTTLNIQYGDSARQDDARKLMHMADTIE---------------EGTMP-- 122
Query: 652 TREYSPLVEELWKDAAIQATYSRRSELEMLSSVASYFLERVVDISRTDYEPSDLDILYAE 711
+E S +++ LWKD+ IQA + R SE + L+ A Y+L + + Y P++ D+L +
Sbjct: 123 -KEMSDIIQRLWKDSGIQACFDRASEYQ-LNDSAGYYLSDLERLVTPGYVPTEQDVLRSR 180
Query: 712 GVTSSNGLACVDFSFPRSASDDSVDTADQHDSLLRWV 748
+ G+ FSF + + D Q +W+
Sbjct: 181 --VKTTGIIETQFSF-KDLNFRMFDVGGQRSERKKWI 214
>pdb|4FID|A Chain A, Crystal Structure Of A Heterotrimeric G-Protein Subunit
From Entamoeba Histolytica, Ehg-Alpha-1
pdb|4FID|B Chain B, Crystal Structure Of A Heterotrimeric G-Protein Subunit
From Entamoeba Histolytica, Ehg-Alpha-1
Length = 340
Score = 46.6 bits (109), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 53/189 (28%), Positives = 73/189 (38%), Gaps = 42/189 (22%)
Query: 536 LVGCSGSGTSTIFKQAKILYKAVPFSDDEHENIKLKIQSNAYGYLGILLEGRERFEEEIL 595
L+G SG STI KQ KIL+ F + E K I SN L+E + IL
Sbjct: 10 LLGSGESGKSTIAKQLKILFGG-GFPEQERATHKSSICSNVVTCXRTLIE-----QSAIL 63
Query: 596 GEKRKKQSSDETNPVGSSDSTDGKTIYTIGPRLKAFSDWLLKTMVSGNLEAIFPAATREY 655
K Q P +T+ P L G++EA
Sbjct: 64 NHPXKYQ------PKSKEFTTEDPVTLPFSPEL------------VGDVEA--------- 96
Query: 656 SPLVEELWKDAAIQATYSRRSELEMLSSVASYFLERVVDISRTDYEPSDLDILYAEGVTS 715
LW D IQATY ++ + L A Y E V I+ DY P++ D+++ T
Sbjct: 97 ------LWADEGIQATYEESAKFQ-LPDCAKYLFENVKRIAXEDYVPTEEDLIHNR--TK 147
Query: 716 SNGLACVDF 724
+ G+ DF
Sbjct: 148 TTGIHEYDF 156
>pdb|1FQJ|A Chain A, Crystal Structure Of The Heterotrimeric Complex Of The Rgs
Domain Of Rgs9, The Gamma Subunit Of Phosphodiesterase
And The GtI1 CHIMERA ALPHA SUBUNIT [(RGS9)-(Pdegamma)-
(GtI1ALPHA)-(Gdp)-(Alf4-)-(Mg2+)]
pdb|1FQJ|D Chain D, Crystal Structure Of The Heterotrimeric Complex Of The Rgs
Domain Of Rgs9, The Gamma Subunit Of Phosphodiesterase
And The GtI1 CHIMERA ALPHA SUBUNIT [(RGS9)-(Pdegamma)-
(GtI1ALPHA)-(Gdp)-(Alf4-)-(Mg2+)]
pdb|1FQK|A Chain A, Crystal Structure Of The Heterodimeric Complex Of The Rgs
Domain Of Rgs9, And The GtI1 CHIMERA ALPHA SUBUNIT
[(Rgs9)-(GtI1ALPHA)-(Gdp)-(Alf4-)-(Mg2+)]
pdb|1FQK|C Chain C, Crystal Structure Of The Heterodimeric Complex Of The Rgs
Domain Of Rgs9, And The GtI1 CHIMERA ALPHA SUBUNIT
[(Rgs9)-(GtI1ALPHA)-(Gdp)-(Alf4-)-(Mg2+)]
Length = 325
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 49/216 (22%), Positives = 88/216 (40%), Gaps = 38/216 (17%)
Query: 533 KLLLVGCSGSGTSTIFKQAKILYKAVPFSDDEHENIKLKIQSNAYGYLGILLEGRERFEE 592
KLLL+G SG STI KQ KI+++ ++ E I + + L I+
Sbjct: 6 KLLLLGAGESGKSTIVKQMKIIHQDGYSLEECLEFIAIIYGNTLQSILAIV--------- 56
Query: 593 EILGEKRKKQSSDETNPVGSSDSTDGKTIYTIGPRLKAFSDWLLKTMVSGNLEAIFPAAT 652
+ ++ S+ D + + + ++ E P
Sbjct: 57 -------RAMTTLNIQYGDSARQDDARKLMHMADTIE---------------EGTMP--- 91
Query: 653 REYSPLVEELWKDAAIQATYSRRSELEMLSSVASYFLERVVDISRTDYEPSDLDILYAEG 712
+E S +++ LWKD+ IQA + R SE + L+ A Y+L + + Y P++ D+L +
Sbjct: 92 KEMSDIIQRLWKDSGIQACFDRASEYQ-LNDSAGYYLSDLERLVTPGYVPTEQDVLRSR- 149
Query: 713 VTSSNGLACVDFSFPRSASDDSVDTADQHDSLLRWV 748
+ G+ FSF + + D Q +W+
Sbjct: 150 -VKTTGIIETQFSF-KDLNFRMFDVGGQRSERKKWI 183
>pdb|1TND|A Chain A, The 2.2 Angstroms Crystal Structure Of Transducin-Alpha
Complexed With Gtp Gamma S
pdb|1TND|B Chain B, The 2.2 Angstroms Crystal Structure Of Transducin-Alpha
Complexed With Gtp Gamma S
pdb|1TND|C Chain C, The 2.2 Angstroms Crystal Structure Of Transducin-Alpha
Complexed With Gtp Gamma S
pdb|1TAD|A Chain A, Gtpase Mechanism Of Gproteins From The 1.7-Angstrom
Crystal Structure Of Transducin Alpha-Gdp-Alf4-
pdb|1TAD|B Chain B, Gtpase Mechanism Of Gproteins From The 1.7-Angstrom
Crystal Structure Of Transducin Alpha-Gdp-Alf4-
pdb|1TAD|C Chain C, Gtpase Mechanism Of Gproteins From The 1.7-Angstrom
Crystal Structure Of Transducin Alpha-Gdp-Alf4-
pdb|1TAG|A Chain A, Structural Determinants For Activation Of The
Alpha-Subunit Of A Heterotrimeric G Protein
Length = 324
Score = 45.1 bits (105), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 49/216 (22%), Positives = 88/216 (40%), Gaps = 38/216 (17%)
Query: 533 KLLLVGCSGSGTSTIFKQAKILYKAVPFSDDEHENIKLKIQSNAYGYLGILLEGRERFEE 592
KLLL+G SG STI KQ KI+++ ++ E I + + L I+
Sbjct: 5 KLLLLGAGESGKSTIVKQMKIIHQDGYSLEECLEFIAIIYGNTLQSILAIV--------- 55
Query: 593 EILGEKRKKQSSDETNPVGSSDSTDGKTIYTIGPRLKAFSDWLLKTMVSGNLEAIFPAAT 652
+ ++ S+ D + + + ++ E P
Sbjct: 56 -------RAMTTLNIQYGDSARQDDARKLMHMADTIE---------------EGTMP--- 90
Query: 653 REYSPLVEELWKDAAIQATYSRRSELEMLSSVASYFLERVVDISRTDYEPSDLDILYAEG 712
+E S +++ LWKD+ IQA + R SE + L+ A Y+L + + Y P++ D+L +
Sbjct: 91 KEMSDIIQRLWKDSGIQACFDRASEYQ-LNDSAGYYLSDLERLVTPGYVPTEQDVLRSR- 148
Query: 713 VTSSNGLACVDFSFPRSASDDSVDTADQHDSLLRWV 748
+ G+ FSF + + D Q +W+
Sbjct: 149 -VKTTGIIETQFSF-KDLNFRMFDVGGQRSERKKWI 182
>pdb|1GOT|A Chain A, Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimera And
The Gt-Beta-Gamma Subunits
Length = 350
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 48/96 (50%), Gaps = 4/96 (4%)
Query: 653 REYSPLVEELWKDAAIQATYSRRSELEMLSSVASYFLERVVDISRTDYEPSDLDILYAEG 712
+E S +++ LWKD+ IQA + R SE + L+ A Y+L + + Y P++ D+L +
Sbjct: 117 KEXSDIIQRLWKDSGIQACFDRASEYQ-LNDSAGYYLSDLERLVTPGYVPTEQDVLRSR- 174
Query: 713 VTSSNGLACVDFSFPRSASDDSVDTADQHDSLLRWV 748
+ G+ FSF + + D Q +W+
Sbjct: 175 -VKTTGIIETQFSF-KDLNFRXFDVGGQRSERKKWI 208
Score = 30.8 bits (68), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 14/24 (58%), Positives = 18/24 (75%)
Query: 533 KLLLVGCSGSGTSTIFKQAKILYK 556
KLLL+G SG STI KQ KI+++
Sbjct: 31 KLLLLGAGESGKSTIVKQXKIIHQ 54
>pdb|3AH8|A Chain A, Structure Of Heterotrimeric G Protein Galpha-Q Beta Gamma
In Complex With An Inhibitor Ym-254890
Length = 355
Score = 39.7 bits (91), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 54/247 (21%), Positives = 98/247 (39%), Gaps = 46/247 (18%)
Query: 506 SSNPGAEQGSGLMSRSVPDYIER-RTLQKLLLVGCSGSGTSTIFKQAKILYKAVPFSDDE 564
+ + A + S ++ R++ + ER R KLLL+G SG ST KQ +I++ + +SD++
Sbjct: 9 AEDKAAVERSKMIDRNLREDGERSRRELKLLLLGTGESGKSTFIKQMRIIHGS-GYSDED 67
Query: 565 HENIKLKIQSNAYGYLGILLEGRERFEEEILGEKRKKQSSDETNPVGSSDSTDGKTIYTI 624
+ N + + ++ + + E K +
Sbjct: 68 KRGFTKLVYQNIFTAMQAMIRAMDTLKIPYKYEHNKAHAQ-------------------- 107
Query: 625 GPRLKAFSDWLLKTMVSGNLEAIFPAATREYSPLVEELWKDAAIQATYSRRSELEMLSSV 684
L++ + ++E + A Y ++ LW D IQ Y RR E ++ S
Sbjct: 108 ----------LVREV---DVEKV-SAFENPYVDAIKSLWNDPGIQECYDRRREYQLSDST 153
Query: 685 ASYF--LERVVDISRTDYEPSDLDILYAEGVTSSNGLACVDFSFP-RSASDDSVDTADQH 741
Y L+RV D S Y P+ D+L T+ +++ F +S VD Q
Sbjct: 154 KYYLNDLDRVADPS---YLPTQQDVLRVRVPTT----GIIEYPFDLQSVIFRMVDVGGQR 206
Query: 742 DSLLRWV 748
+W+
Sbjct: 207 SERRKWI 213
>pdb|2BCJ|Q Chain Q, Crystal Structure Of G Protein-coupled Receptor Kinase 2
In Complex With Galpha-q And Gbetagamma Subunits
pdb|2RGN|A Chain A, Crystal Structure Of P63rhogef Complex With Galpha-Q And
Rhoa
pdb|2RGN|D Chain D, Crystal Structure Of P63rhogef Complex With Galpha-Q And
Rhoa
Length = 353
Score = 39.7 bits (91), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 54/247 (21%), Positives = 98/247 (39%), Gaps = 46/247 (18%)
Query: 506 SSNPGAEQGSGLMSRSVPDYIER-RTLQKLLLVGCSGSGTSTIFKQAKILYKAVPFSDDE 564
+ + A + S ++ R++ + ER R KLLL+G SG ST KQ +I++ + +SD++
Sbjct: 7 AEDKAAVERSKMIDRNLREDGERSRRELKLLLLGTGESGKSTFIKQMRIIHGS-GYSDED 65
Query: 565 HENIKLKIQSNAYGYLGILLEGRERFEEEILGEKRKKQSSDETNPVGSSDSTDGKTIYTI 624
+ N + + ++ + + E K +
Sbjct: 66 KRGFTKLVYQNIFTAMQAMIRAMDTLKIPYKYEHNKAHAQ-------------------- 105
Query: 625 GPRLKAFSDWLLKTMVSGNLEAIFPAATREYSPLVEELWKDAAIQATYSRRSELEMLSSV 684
L++ + ++E + A Y ++ LW D IQ Y RR E ++ S
Sbjct: 106 ----------LVREV---DVEKV-SAFENPYVDAIKSLWNDPGIQECYDRRREYQLSDST 151
Query: 685 ASYF--LERVVDISRTDYEPSDLDILYAEGVTSSNGLACVDFSFP-RSASDDSVDTADQH 741
Y L+RV D S Y P+ D+L T+ +++ F +S VD Q
Sbjct: 152 KYYLNDLDRVADPS---YLPTQQDVLRVRVPTT----GIIEYPFDLQSVIFRMVDVGGQR 204
Query: 742 DSLLRWV 748
+W+
Sbjct: 205 SERRKWI 211
>pdb|4GNK|A Chain A, Crystal Structure Of Galphaq In Complex With Full-length
Human Plcbeta3
pdb|4GNK|C Chain C, Crystal Structure Of Galphaq In Complex With Full-length
Human Plcbeta3
Length = 353
Score = 38.5 bits (88), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 54/242 (22%), Positives = 92/242 (38%), Gaps = 54/242 (22%)
Query: 519 SRSVPDYIER---------RTLQKLLLVGCSGSGTSTIFKQAKILYKAVPFSDDEHENIK 569
+R + D IER R KLLL+G SG ST KQ +I++ + +SD++
Sbjct: 12 ARRINDEIERQLRRDKRDARRELKLLLLGTGESGKSTFIKQMRIIHGS-GYSDEDKRGFT 70
Query: 570 LKIQSNAYGYLGILLEGRERFEEEILGEKRKKQSSDETNPVGSSDSTDGKTIYTIGPRLK 629
+ N + + ++ + + E K +
Sbjct: 71 KLVYQNIFTAMQAMIRAMDTLKIPYKYEHNKAHAQ------------------------- 105
Query: 630 AFSDWLLKTMVSGNLEAIFPAATREYSPLVEELWKDAAIQATYSRRSELEMLSSVASYF- 688
L++ + ++E + A Y ++ LW D IQ Y RR E ++ S Y
Sbjct: 106 -----LVREV---DVEKV-SAFENPYVDAIKSLWNDPGIQECYDRRREYQLSDSTKYYLN 156
Query: 689 -LERVVDISRTDYEPSDLDILYAEGVTSSNGLACVDFSFP-RSASDDSVDTADQHDSLLR 746
L+RV D S Y P+ D+L T+ +++ F +S VD Q +
Sbjct: 157 DLDRVADPS---YLPTQQDVLRVRVPTT----GIIEYPFDLQSVIFRMVDVGGQRSERRK 209
Query: 747 WV 748
W+
Sbjct: 210 WI 211
>pdb|3OHM|A Chain A, Crystal Structure Of Activated G Alpha Q Bound To Its
Effector Phospholipase C Beta 3
Length = 327
Score = 38.1 bits (87), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 51/224 (22%), Positives = 87/224 (38%), Gaps = 46/224 (20%)
Query: 528 RRTLQKLLLVGCSGSGTSTIFKQAKILYKAVPFSDDEHENIKLKIQSNAYGYLGILLEGR 587
RR L KLLL+G SG ST KQ +I++ + +SD++ + N + + ++
Sbjct: 5 RREL-KLLLLGTGESGKSTFIKQMRIIHGS-GYSDEDKRGFTKLVYQNIFTAMQAMIRAM 62
Query: 588 ERFEEEILGEKRKKQSSDETNPVGSSDSTDGKTIYTIGPRLKAFSDWLLKTMVSGNLEAI 647
+ + E K + L++ + ++E +
Sbjct: 63 DTLKIPYKYEHNKAHAQ------------------------------LVREV---DVEKV 89
Query: 648 FPAATREYSPLVEELWKDAAIQATYSRRSELEMLSSVASYF--LERVVDISRTDYEPSDL 705
A Y ++ LW D IQ Y RR E ++ S Y L+RV D S Y P+
Sbjct: 90 -SAFENPYVDAIKSLWNDPGIQECYDRRREYQLSDSTKYYLNDLDRVADPS---YLPTQQ 145
Query: 706 DILYAEGVTSSNGLACVDFSFP-RSASDDSVDTADQHDSLLRWV 748
D+L T+ +++ F +S VD Q +W+
Sbjct: 146 DVLRVRVPTT----GIIEYPFDLQSVIFRMVDVGGQRSERRKWI 185
>pdb|4EKC|A Chain A, Structure Of Human Regulator Of G Protein Signaling 2
(rgs2) In Complex With Murine Galpha-q(r183c)
pdb|4EKC|C Chain C, Structure Of Human Regulator Of G Protein Signaling 2
(rgs2) In Complex With Murine Galpha-q(r183c)
pdb|4EKD|A Chain A, Structure Of Human Regulator Of G Protein Signaling 2
(rgs2) In Complex With Murine Galpha-q(r183c)
Length = 347
Score = 37.7 bits (86), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 46/201 (22%), Positives = 79/201 (39%), Gaps = 49/201 (24%)
Query: 519 SRSVPDYIER---------RTLQKLLLVGCSGSGTSTIFKQAKILYKAVPFSDDEHENIK 569
+R + D IER R KLLL+G SG ST KQ +I++ + +SD++
Sbjct: 6 ARRINDEIERQLRRDKRDARRELKLLLLGTGESGKSTFIKQMRIIHGS-GYSDEDKRGFT 64
Query: 570 LKIQSNAYGYLGILLEGRERFEEEILGEKRKKQSSDETNPVGSSDSTDGKTIYTIGPRLK 629
+ N + + ++ + + E K +
Sbjct: 65 KLVYQNIFTAMQAMIRAMDTLKIPYKYEHNKAHAQ------------------------- 99
Query: 630 AFSDWLLKTMVSGNLEAIFPAATREYSPLVEELWKDAAIQATYSRRSELEMLSSVASYF- 688
L++ + ++E + +Y+ ++ LW D IQ Y RR E ++ S Y
Sbjct: 100 -----LVREV---DVEKVSAFDVPDYAA-IKSLWNDPGIQECYDRRREYQLSDSTKYYLN 150
Query: 689 -LERVVDISRTDYEPSDLDIL 708
L+RV D S Y P+ D+L
Sbjct: 151 DLDRVADPS---YLPTQQDVL 168
>pdb|2HPW|A Chain A, Green Fluorescent Protein From Clytia Gregaria
Length = 233
Score = 29.6 bits (65), Expect = 5.7, Method: Composition-based stats.
Identities = 16/48 (33%), Positives = 24/48 (50%), Gaps = 4/48 (8%)
Query: 180 QPDWESNESVLSMD----YPSSRVSSLKTGDLSNRINHDDDGFESNGD 223
QPD S + ++S D Y + + G L NR+ GF+SNG+
Sbjct: 87 QPDGYSQDRIISFDNDGQYDVKAKVTYENGTLYNRVTVKGTGFKSNGN 134
>pdb|1WRD|A Chain A, Crystal Structure Of Tom1 Gat Domain In Complex With
Ubiquitin
Length = 103
Score = 29.6 bits (65), Expect = 6.6, Method: Composition-based stats.
Identities = 14/34 (41%), Positives = 21/34 (61%)
Query: 675 RSELEMLSSVASYFLERVVDISRTDYEPSDLDIL 708
RSELEM+S E + ++ T EP+DL++L
Sbjct: 12 RSELEMVSGNVRVMSEMLTELVPTQAEPADLELL 45
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.314 0.132 0.389
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 21,795,189
Number of Sequences: 62578
Number of extensions: 892217
Number of successful extensions: 1738
Number of sequences better than 100.0: 63
Number of HSP's better than 100.0 without gapping: 47
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 1605
Number of HSP's gapped (non-prelim): 101
length of query: 750
length of database: 14,973,337
effective HSP length: 106
effective length of query: 644
effective length of database: 8,340,069
effective search space: 5371004436
effective search space used: 5371004436
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 55 (25.8 bits)