Query 004481
Match_columns 750
No_of_seqs 256 out of 1032
Neff 4.0
Searched_HMMs 46136
Date Fri Mar 29 00:07:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004481.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/004481hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0082 G-protein alpha subuni 100.0 9.3E-47 2E-51 402.5 12.6 199 512-747 13-212 (354)
2 KOG0085 G protein subunit Galp 100.0 7E-43 1.5E-47 354.7 5.9 202 507-747 14-216 (359)
3 KOG0099 G protein subunit Galp 100.0 1.2E-41 2.7E-46 349.8 8.5 202 509-747 17-219 (379)
4 smart00275 G_alpha G protein a 100.0 6.8E-41 1.5E-45 356.4 11.9 198 513-747 2-201 (342)
5 cd00066 G-alpha G protein alph 100.0 5.5E-39 1.2E-43 337.9 13.5 178 532-747 1-178 (317)
6 PF00503 G-alpha: G-protein al 100.0 2.9E-38 6.4E-43 338.8 9.8 208 513-747 39-253 (389)
7 KOG0074 GTP-binding ADP-ribosy 95.9 0.0039 8.5E-08 61.6 1.9 34 527-561 13-52 (185)
8 PF00025 Arf: ADP-ribosylation 94.9 0.018 3.9E-07 56.1 2.8 25 528-552 11-35 (175)
9 cd04155 Arl3 Arl3 subfamily. 94.6 0.02 4.4E-07 53.8 2.4 26 527-552 10-35 (173)
10 cd01892 Miro2 Miro2 subfamily. 94.3 0.026 5.7E-07 54.1 2.3 25 528-552 1-25 (169)
11 PF08477 Miro: Miro-like prote 94.2 0.03 6.5E-07 49.7 2.2 20 533-552 1-20 (119)
12 PF13207 AAA_17: AAA domain; P 94.0 0.036 7.7E-07 49.8 2.4 23 533-555 1-23 (121)
13 cd00879 Sar1 Sar1 subfamily. 93.7 0.04 8.7E-07 53.0 2.3 24 529-552 17-40 (190)
14 cd04113 Rab4 Rab4 subfamily. 93.6 0.041 8.8E-07 51.2 2.1 21 532-552 1-21 (161)
15 TIGR00231 small_GTP small GTP- 93.5 0.045 9.8E-07 48.5 2.2 22 531-552 1-22 (161)
16 cd04154 Arl2 Arl2 subfamily. 93.5 0.045 9.7E-07 52.1 2.3 25 528-552 11-35 (173)
17 cd00154 Rab Rab family. Rab G 93.4 0.047 1E-06 49.1 2.1 21 532-552 1-21 (159)
18 cd00157 Rho Rho (Ras homology) 93.4 0.047 1E-06 50.9 2.1 21 532-552 1-21 (171)
19 PRK07261 topology modulation p 93.4 0.046 9.9E-07 53.6 2.2 20 533-552 2-21 (171)
20 cd04138 H_N_K_Ras_like H-Ras/N 93.4 0.049 1.1E-06 49.9 2.2 22 531-552 1-22 (162)
21 PRK08118 topology modulation p 93.2 0.084 1.8E-06 51.8 3.7 22 532-553 2-23 (167)
22 PTZ00133 ADP-ribosylation fact 93.1 0.055 1.2E-06 52.8 2.3 24 529-552 15-38 (182)
23 COG0563 Adk Adenylate kinase a 93.1 0.054 1.2E-06 54.2 2.2 20 532-551 1-20 (178)
24 smart00175 RAB Rab subfamily o 92.9 0.062 1.3E-06 49.6 2.1 21 532-552 1-21 (164)
25 cd04150 Arf1_5_like Arf1-Arf5- 92.8 0.065 1.4E-06 50.8 2.2 21 532-552 1-21 (159)
26 cd01869 Rab1_Ypt1 Rab1/Ypt1 su 92.7 0.073 1.6E-06 49.9 2.3 21 531-551 2-22 (166)
27 cd04139 RalA_RalB RalA/RalB su 92.4 0.078 1.7E-06 48.8 2.1 21 532-552 1-21 (164)
28 smart00173 RAS Ras subfamily o 92.4 0.078 1.7E-06 49.3 2.1 21 532-552 1-21 (164)
29 KOG0073 GTP-binding ADP-ribosy 92.4 0.097 2.1E-06 53.0 2.8 24 528-551 13-36 (185)
30 cd01860 Rab5_related Rab5-rela 92.3 0.083 1.8E-06 49.0 2.2 22 531-552 1-22 (163)
31 PF01926 MMR_HSR1: 50S ribosom 92.3 0.09 1.9E-06 47.2 2.3 20 533-552 1-20 (116)
32 PF00071 Ras: Ras family; Int 92.3 0.088 1.9E-06 48.9 2.3 19 533-551 1-19 (162)
33 cd04123 Rab21 Rab21 subfamily. 92.2 0.085 1.9E-06 48.3 2.1 21 532-552 1-21 (162)
34 cd04114 Rab30 Rab30 subfamily. 92.2 0.088 1.9E-06 49.2 2.2 24 529-552 5-28 (169)
35 PF13671 AAA_33: AAA domain; P 92.2 0.087 1.9E-06 48.4 2.1 19 534-552 2-20 (143)
36 PRK06217 hypothetical protein; 92.2 0.084 1.8E-06 51.8 2.1 23 532-554 2-24 (183)
37 cd04160 Arfrp1 Arfrp1 subfamil 92.1 0.086 1.9E-06 49.2 2.1 23 533-555 1-23 (167)
38 cd04115 Rab33B_Rab33A Rab33B/R 92.1 0.093 2E-06 49.8 2.3 23 530-552 1-23 (170)
39 cd04135 Tc10 TC10 subfamily. 92.0 0.096 2.1E-06 49.3 2.3 21 532-552 1-21 (174)
40 COG1100 GTPase SAR1 and relate 92.0 0.097 2.1E-06 51.4 2.3 22 531-552 5-26 (219)
41 PLN00223 ADP-ribosylation fact 92.0 0.096 2.1E-06 51.2 2.3 24 529-552 15-38 (181)
42 cd04106 Rab23_lke Rab23-like s 91.9 0.1 2.2E-06 48.4 2.2 21 532-552 1-21 (162)
43 cd01861 Rab6 Rab6 subfamily. 91.8 0.1 2.2E-06 48.3 2.1 21 532-552 1-21 (161)
44 smart00178 SAR Sar1p-like memb 91.8 0.11 2.3E-06 50.7 2.4 24 529-552 15-38 (184)
45 smart00177 ARF ARF-like small 91.8 0.11 2.3E-06 50.2 2.3 24 529-552 11-34 (175)
46 PF13555 AAA_29: P-loop contai 91.7 0.12 2.6E-06 44.1 2.3 23 534-556 26-48 (62)
47 cd01865 Rab3 Rab3 subfamily. 91.6 0.11 2.4E-06 48.9 2.2 20 532-551 2-21 (165)
48 cd04124 RabL2 RabL2 subfamily. 91.6 0.11 2.4E-06 49.0 2.2 21 532-552 1-21 (161)
49 cd00876 Ras Ras family. The R 91.6 0.11 2.3E-06 47.6 1.9 20 533-552 1-20 (160)
50 cd04153 Arl5_Arl8 Arl5/Arl8 su 91.5 0.12 2.5E-06 49.7 2.3 23 530-552 14-36 (174)
51 cd04136 Rap_like Rap-like subf 91.4 0.12 2.7E-06 47.7 2.2 21 532-552 2-22 (163)
52 cd01864 Rab19 Rab19 subfamily. 91.4 0.13 2.9E-06 48.2 2.4 21 531-551 3-23 (165)
53 COG4639 Predicted kinase [Gene 91.3 0.32 6.9E-06 49.0 5.1 17 534-550 5-21 (168)
54 cd04116 Rab9 Rab9 subfamily. 91.3 0.13 2.9E-06 48.3 2.4 23 530-552 4-26 (170)
55 PF13238 AAA_18: AAA domain; P 91.3 0.13 2.9E-06 45.7 2.3 19 534-552 1-19 (129)
56 cd04117 Rab15 Rab15 subfamily. 91.3 0.13 2.7E-06 48.8 2.2 21 532-552 1-21 (161)
57 cd04141 Rit_Rin_Ric Rit/Rin/Ri 91.3 0.13 2.9E-06 49.5 2.4 23 530-552 1-23 (172)
58 cd04149 Arf6 Arf6 subfamily. 91.2 0.13 2.8E-06 49.5 2.2 24 529-552 7-30 (168)
59 cd04177 RSR1 RSR1 subgroup. R 91.2 0.13 2.8E-06 48.6 2.2 22 531-552 1-22 (168)
60 cd04119 RJL RJL (RabJ-Like) su 91.2 0.13 2.9E-06 47.3 2.2 21 532-552 1-21 (168)
61 cd01868 Rab11_like Rab11-like. 91.1 0.13 2.9E-06 47.9 2.2 21 531-551 3-23 (165)
62 cd04127 Rab27A Rab27a subfamil 91.1 0.14 3.1E-06 48.6 2.4 22 530-551 3-24 (180)
63 cd01895 EngA2 EngA2 subfamily. 91.1 0.14 3E-06 47.1 2.2 21 531-551 2-22 (174)
64 cd04107 Rab32_Rab38 Rab38/Rab3 91.0 0.14 3E-06 50.5 2.2 21 532-552 1-21 (201)
65 cd04145 M_R_Ras_like M-Ras/R-R 90.9 0.15 3.2E-06 47.2 2.3 21 531-551 2-22 (164)
66 cd04140 ARHI_like ARHI subfami 90.9 0.15 3.2E-06 48.2 2.2 20 532-551 2-21 (165)
67 cd01862 Rab7 Rab7 subfamily. 90.8 0.14 3.1E-06 47.7 2.1 20 532-551 1-20 (172)
68 cd04151 Arl1 Arl1 subfamily. 90.8 0.14 3E-06 47.8 2.0 20 533-552 1-20 (158)
69 cd01878 HflX HflX subfamily. 90.7 0.095 2.1E-06 51.3 0.8 21 531-551 41-61 (204)
70 cd04103 Centaurin_gamma Centau 90.7 0.15 3.3E-06 48.7 2.2 21 532-552 1-21 (158)
71 cd01893 Miro1 Miro1 subfamily. 90.7 0.15 3.3E-06 48.2 2.1 21 532-552 1-21 (166)
72 cd04112 Rab26 Rab26 subfamily. 90.6 0.15 3.2E-06 49.8 2.1 21 532-552 1-21 (191)
73 PLN03108 Rab family protein; P 90.6 0.16 3.4E-06 50.9 2.3 23 530-552 5-27 (210)
74 cd01863 Rab18 Rab18 subfamily. 90.6 0.16 3.5E-06 47.1 2.1 21 532-552 1-21 (161)
75 PF00005 ABC_tran: ABC transpo 90.5 0.17 3.8E-06 46.3 2.3 22 531-552 11-32 (137)
76 cd04110 Rab35 Rab35 subfamily. 90.5 0.17 3.7E-06 50.0 2.4 23 530-552 5-27 (199)
77 cd04122 Rab14 Rab14 subfamily. 90.5 0.17 3.6E-06 47.7 2.2 22 531-552 2-23 (166)
78 cd04134 Rho3 Rho3 subfamily. 90.5 0.16 3.5E-06 49.6 2.2 21 532-552 1-21 (189)
79 cd04137 RheB Rheb (Ras Homolog 90.5 0.17 3.7E-06 48.1 2.3 21 532-552 2-22 (180)
80 cd04163 Era Era subfamily. Er 90.4 0.19 4E-06 45.5 2.4 22 530-551 2-23 (168)
81 smart00382 AAA ATPases associa 90.4 0.17 3.7E-06 43.7 2.1 25 532-556 3-27 (148)
82 PTZ00132 GTP-binding nuclear p 90.4 0.16 3.5E-06 50.5 2.2 23 529-551 7-29 (215)
83 cd01867 Rab8_Rab10_Rab13_like 90.4 0.17 3.7E-06 47.8 2.2 22 531-552 3-24 (167)
84 PRK10078 ribose 1,5-bisphospho 90.4 0.15 3.3E-06 50.1 2.0 22 533-554 4-25 (186)
85 cd01874 Cdc42 Cdc42 subfamily. 90.4 0.18 3.9E-06 48.9 2.4 22 531-552 1-22 (175)
86 cd04101 RabL4 RabL4 (Rab-like4 90.4 0.17 3.8E-06 47.0 2.2 20 532-551 1-20 (164)
87 TIGR02322 phosphon_PhnN phosph 90.3 0.16 3.5E-06 49.1 2.0 23 533-555 3-25 (179)
88 cd04158 ARD1 ARD1 subfamily. 90.3 0.17 3.6E-06 48.3 2.0 20 533-552 1-20 (169)
89 cd04164 trmE TrmE (MnmE, ThdF, 90.3 0.18 3.9E-06 45.8 2.2 21 532-552 2-22 (157)
90 cd04129 Rho2 Rho2 subfamily. 90.3 0.17 3.7E-06 49.2 2.2 21 532-552 2-22 (187)
91 cd01870 RhoA_like RhoA-like su 90.2 0.18 4E-06 47.5 2.2 21 532-552 2-22 (175)
92 cd01876 YihA_EngB The YihA (En 90.1 0.17 3.8E-06 46.0 1.9 20 533-552 1-20 (170)
93 cd04125 RabA_like RabA-like su 90.0 0.18 3.9E-06 48.8 2.1 21 532-552 1-21 (188)
94 cd04118 Rab24 Rab24 subfamily. 89.8 0.19 4.2E-06 48.5 2.1 21 532-552 1-21 (193)
95 cd04132 Rho4_like Rho4-like su 89.8 0.2 4.3E-06 48.1 2.1 21 532-552 1-21 (187)
96 cd00877 Ran Ran (Ras-related n 89.8 0.2 4.3E-06 47.9 2.1 21 532-552 1-21 (166)
97 cd04175 Rap1 Rap1 subgroup. T 89.7 0.21 4.5E-06 46.8 2.2 22 531-552 1-22 (164)
98 PRK03839 putative kinase; Prov 89.7 0.2 4.3E-06 48.7 2.1 22 533-554 2-23 (180)
99 cd04156 ARLTS1 ARLTS1 subfamil 89.7 0.2 4.4E-06 46.4 2.0 20 533-552 1-20 (160)
100 cd04159 Arl10_like Arl10-like 89.6 0.21 4.6E-06 45.0 2.0 20 533-552 1-20 (159)
101 cd01866 Rab2 Rab2 subfamily. 89.5 0.23 4.9E-06 47.1 2.2 22 531-552 4-25 (168)
102 cd02021 GntK Gluconate kinase 89.5 0.21 4.6E-06 46.8 2.0 20 534-553 2-21 (150)
103 TIGR03263 guanyl_kin guanylate 89.3 0.22 4.7E-06 48.0 2.0 22 533-554 3-24 (180)
104 TIGR03598 GTPase_YsxC ribosome 89.2 0.24 5.2E-06 47.9 2.3 26 527-552 14-39 (179)
105 PRK14532 adenylate kinase; Pro 89.1 0.24 5.2E-06 48.3 2.2 20 533-552 2-21 (188)
106 cd04152 Arl4_Arl7 Arl4/Arl7 su 89.1 0.24 5.3E-06 48.1 2.2 21 531-551 3-23 (183)
107 cd03243 ABC_MutS_homologs The 89.1 0.25 5.3E-06 49.3 2.3 21 532-552 30-50 (202)
108 cd01428 ADK Adenylate kinase ( 89.0 0.23 5E-06 48.0 2.0 24 533-556 1-24 (194)
109 cd04176 Rap2 Rap2 subgroup. T 89.0 0.26 5.7E-06 45.9 2.3 21 531-551 1-21 (163)
110 cd03274 ABC_SMC4_euk Eukaryoti 88.9 0.34 7.3E-06 49.3 3.2 23 534-556 28-50 (212)
111 cd04161 Arl2l1_Arl13_like Arl2 88.9 0.24 5.3E-06 47.3 2.0 20 533-552 1-20 (167)
112 cd04130 Wrch_1 Wrch-1 subfamil 88.9 0.26 5.6E-06 47.0 2.1 20 532-551 1-20 (173)
113 PTZ00369 Ras-like protein; Pro 88.8 0.28 6E-06 47.9 2.4 23 530-552 4-26 (189)
114 PRK13949 shikimate kinase; Pro 88.7 0.26 5.7E-06 48.4 2.2 20 533-552 3-22 (169)
115 cd04157 Arl6 Arl6 subfamily. 88.7 0.26 5.6E-06 45.5 2.0 20 533-552 1-20 (162)
116 cd03283 ABC_MutS-like MutS-lik 88.6 0.26 5.6E-06 49.8 2.1 21 533-553 27-47 (199)
117 TIGR02528 EutP ethanolamine ut 88.6 0.27 5.9E-06 45.0 2.1 19 533-551 2-20 (142)
118 TIGR01313 therm_gnt_kin carboh 88.6 0.22 4.8E-06 47.4 1.5 19 534-552 1-19 (163)
119 cd01875 RhoG RhoG subfamily. 88.6 0.3 6.5E-06 48.0 2.5 22 531-552 3-24 (191)
120 smart00064 FYVE Protein presen 88.5 0.21 4.5E-06 42.0 1.1 48 271-318 10-63 (68)
121 cd04109 Rab28 Rab28 subfamily. 88.5 0.27 5.8E-06 49.2 2.1 21 532-552 1-21 (215)
122 COG4619 ABC-type uncharacteriz 88.5 0.36 7.9E-06 49.6 3.0 26 532-557 30-55 (223)
123 PRK14530 adenylate kinase; Pro 88.4 0.28 6E-06 49.4 2.1 24 533-556 5-28 (215)
124 TIGR01359 UMP_CMP_kin_fam UMP- 88.4 0.28 6E-06 47.4 2.0 22 534-555 2-23 (183)
125 TIGR01360 aden_kin_iso1 adenyl 88.4 0.28 6.1E-06 47.1 2.1 21 532-552 4-24 (188)
126 COG1122 CbiO ABC-type cobalt t 88.3 0.26 5.7E-06 51.6 2.0 27 531-557 30-56 (235)
127 PF05729 NACHT: NACHT domain 88.3 0.3 6.5E-06 45.1 2.2 19 534-552 3-21 (166)
128 TIGR01351 adk adenylate kinase 88.2 0.28 6E-06 49.2 2.0 21 533-553 1-21 (210)
129 cd04108 Rab36_Rab34 Rab34/Rab3 88.0 0.31 6.8E-06 46.9 2.1 20 533-552 2-21 (170)
130 PRK00300 gmk guanylate kinase; 88.0 0.3 6.5E-06 48.1 2.0 23 532-554 6-28 (205)
131 cd00878 Arf_Arl Arf (ADP-ribos 87.9 0.31 6.8E-06 45.2 2.0 20 533-552 1-20 (158)
132 PRK00454 engB GTP-binding prot 87.9 0.31 6.7E-06 46.9 2.0 26 527-552 20-45 (196)
133 cd01871 Rac1_like Rac1-like su 87.9 0.34 7.3E-06 47.0 2.3 21 532-552 2-22 (174)
134 PF13521 AAA_28: AAA domain; P 87.9 0.26 5.6E-06 47.2 1.4 22 533-554 1-22 (163)
135 PRK08233 hypothetical protein; 87.8 0.35 7.6E-06 46.2 2.3 21 532-552 4-24 (182)
136 PF00004 AAA: ATPase family as 87.8 0.33 7.2E-06 43.4 2.0 18 534-551 1-18 (132)
137 cd04111 Rab39 Rab39 subfamily. 87.6 0.35 7.6E-06 48.6 2.3 22 531-552 2-23 (211)
138 PLN03071 GTP-binding nuclear p 87.6 0.35 7.6E-06 49.0 2.3 23 529-551 11-33 (219)
139 PRK02496 adk adenylate kinase; 87.6 0.36 7.8E-06 47.1 2.3 24 532-555 2-25 (184)
140 cd03280 ABC_MutS2 MutS2 homolo 87.5 0.36 7.8E-06 48.2 2.3 20 533-552 30-49 (200)
141 cd00227 CPT Chloramphenicol (C 87.3 0.36 7.7E-06 47.0 2.1 21 534-554 5-25 (175)
142 cd04121 Rab40 Rab40 subfamily. 87.3 0.35 7.6E-06 48.2 2.0 24 529-552 4-27 (189)
143 PRK13695 putative NTPase; Prov 87.2 0.37 8E-06 46.8 2.1 19 532-550 1-19 (174)
144 cd03219 ABC_Mj1267_LivG_branch 87.2 0.36 7.8E-06 48.7 2.1 25 530-554 25-49 (236)
145 PTZ00088 adenylate kinase 1; P 87.1 0.4 8.7E-06 49.8 2.5 26 529-554 4-29 (229)
146 PF13173 AAA_14: AAA domain 87.1 0.38 8.2E-06 44.6 2.0 19 534-552 5-23 (128)
147 cd00071 GMPK Guanosine monopho 87.0 0.42 9.2E-06 45.4 2.4 23 534-556 2-24 (137)
148 PF13304 AAA_21: AAA domain; P 87.0 0.19 4.1E-06 47.4 0.0 21 535-555 3-23 (303)
149 cd03292 ABC_FtsE_transporter F 87.0 0.38 8.2E-06 47.7 2.1 26 530-555 26-51 (214)
150 TIGR00235 udk uridine kinase. 87.0 0.42 9.1E-06 47.9 2.4 23 530-552 5-27 (207)
151 cd00009 AAA The AAA+ (ATPases 86.9 0.36 7.8E-06 42.5 1.7 25 530-554 18-42 (151)
152 cd03255 ABC_MJ0796_Lo1CDE_FtsE 86.9 0.39 8.4E-06 47.9 2.1 26 530-555 29-54 (218)
153 COG1136 SalX ABC-type antimicr 86.9 0.62 1.3E-05 48.9 3.7 37 533-569 33-81 (226)
154 PRK14531 adenylate kinase; Pro 86.9 0.4 8.7E-06 47.2 2.2 25 532-556 3-27 (183)
155 cd03272 ABC_SMC3_euk Eukaryoti 86.8 0.42 9.1E-06 48.4 2.4 23 533-555 25-47 (243)
156 cd03226 ABC_cobalt_CbiO_domain 86.7 0.4 8.8E-06 47.5 2.1 25 531-555 26-50 (205)
157 cd03238 ABC_UvrA The excision 86.6 0.41 8.9E-06 47.8 2.1 22 530-551 20-41 (176)
158 cd04146 RERG_RasL11_like RERG/ 86.6 0.4 8.6E-06 45.0 1.9 19 533-551 1-19 (165)
159 cd04128 Spg1 Spg1p. Spg1p (se 86.6 0.41 9E-06 46.9 2.1 21 532-552 1-21 (182)
160 cd04172 Rnd3_RhoE_Rho8 Rnd3/Rh 86.6 0.43 9.3E-06 47.2 2.2 24 529-552 3-26 (182)
161 cd03262 ABC_HisP_GlnQ_permease 86.5 0.42 9.1E-06 47.4 2.1 26 530-555 25-50 (213)
162 smart00534 MUTSac ATPase domai 86.5 0.45 9.7E-06 47.1 2.3 21 534-554 2-22 (185)
163 COG1126 GlnQ ABC-type polar am 86.4 0.42 9.1E-06 50.5 2.1 27 530-556 27-53 (240)
164 cd03234 ABCG_White The White s 86.4 0.43 9.3E-06 48.1 2.2 26 530-555 32-57 (226)
165 cd01120 RecA-like_NTPases RecA 86.4 0.43 9.3E-06 43.6 2.0 18 534-551 2-19 (165)
166 TIGR00960 3a0501s02 Type II (G 86.3 0.44 9.5E-06 47.6 2.1 26 530-555 28-53 (216)
167 cd00820 PEPCK_HprK Phosphoenol 86.2 0.44 9.6E-06 44.7 2.0 21 531-551 15-35 (107)
168 TIGR02673 FtsE cell division A 86.2 0.44 9.6E-06 47.4 2.1 26 530-555 27-52 (214)
169 PF10497 zf-4CXXC_R1: Zinc-fin 86.2 0.29 6.3E-06 45.7 0.8 49 270-319 6-69 (105)
170 PRK00279 adk adenylate kinase; 86.2 0.45 9.7E-06 47.9 2.2 21 532-552 1-21 (215)
171 cd02023 UMPK Uridine monophosp 86.1 0.45 9.7E-06 47.0 2.1 22 534-555 2-23 (198)
172 cd03281 ABC_MSH5_euk MutS5 hom 86.1 0.51 1.1E-05 48.2 2.5 23 532-554 30-52 (213)
173 PLN03118 Rab family protein; P 86.0 0.49 1.1E-05 47.1 2.3 22 530-551 13-34 (211)
174 cd03264 ABC_drug_resistance_li 85.9 0.44 9.6E-06 47.3 2.0 23 533-555 27-49 (211)
175 cd02019 NK Nucleoside/nucleoti 85.9 0.52 1.1E-05 39.8 2.1 21 534-554 2-22 (69)
176 cd03259 ABC_Carb_Solutes_like 85.9 0.47 1E-05 47.2 2.1 24 531-554 26-49 (213)
177 cd03218 ABC_YhbG The ABC trans 85.8 0.48 1E-05 47.7 2.1 24 531-554 26-49 (232)
178 cd03269 ABC_putative_ATPase Th 85.8 0.48 1E-05 47.1 2.1 25 531-555 26-50 (210)
179 cd03301 ABC_MalK_N The N-termi 85.8 0.48 1E-05 47.1 2.1 25 531-555 26-50 (213)
180 cd04144 Ras2 Ras2 subfamily. 85.7 0.48 1E-05 46.3 2.1 20 533-552 1-20 (190)
181 cd03266 ABC_NatA_sodium_export 85.7 0.49 1.1E-05 47.2 2.1 25 531-555 31-55 (218)
182 cd01897 NOG NOG1 is a nucleola 85.6 0.52 1.1E-05 44.1 2.1 20 533-552 2-21 (168)
183 cd03279 ABC_sbcCD SbcCD and ot 85.6 0.41 8.8E-06 48.3 1.5 24 533-556 30-54 (213)
184 cd03265 ABC_DrrA DrrA is the A 85.5 0.5 1.1E-05 47.4 2.1 25 531-555 26-50 (220)
185 TIGR03410 urea_trans_UrtE urea 85.5 0.5 1.1E-05 47.6 2.1 26 530-555 25-50 (230)
186 PRK10463 hydrogenase nickel in 85.5 0.41 9E-06 51.9 1.6 30 522-551 95-124 (290)
187 cd03214 ABC_Iron-Siderophores_ 85.5 0.51 1.1E-05 46.2 2.1 26 530-555 24-49 (180)
188 TIGR01978 sufC FeS assembly AT 85.5 0.51 1.1E-05 47.8 2.2 25 530-554 25-49 (243)
189 TIGR02211 LolD_lipo_ex lipopro 85.5 0.51 1.1E-05 47.2 2.1 24 531-554 31-54 (221)
190 cd03247 ABCC_cytochrome_bd The 85.4 0.52 1.1E-05 45.9 2.1 25 531-555 28-52 (178)
191 COG2274 SunT ABC-type bacterio 85.3 0.66 1.4E-05 55.8 3.3 29 529-557 497-525 (709)
192 PRK04213 GTP-binding protein; 85.3 0.55 1.2E-05 45.9 2.2 23 530-552 8-30 (201)
193 PLN03110 Rab GTPase; Provision 85.2 0.56 1.2E-05 47.3 2.3 22 530-551 11-32 (216)
194 PRK11701 phnK phosphonate C-P 85.2 0.52 1.1E-05 48.6 2.1 27 529-555 30-56 (258)
195 cd04104 p47_IIGP_like p47 (47- 85.2 0.55 1.2E-05 46.7 2.2 21 532-552 2-22 (197)
196 TIGR03608 L_ocin_972_ABC putat 85.2 0.54 1.2E-05 46.4 2.1 26 531-556 24-49 (206)
197 cd04143 Rhes_like Rhes_like su 85.2 0.51 1.1E-05 49.2 2.1 21 532-552 1-21 (247)
198 cd03258 ABC_MetN_methionine_tr 85.2 0.51 1.1E-05 47.7 2.0 27 530-556 30-56 (233)
199 cd03235 ABC_Metallic_Cations A 85.1 0.53 1.2E-05 46.9 2.1 26 530-555 24-49 (213)
200 TIGR02315 ABC_phnC phosphonate 85.1 0.53 1.2E-05 47.7 2.1 26 530-555 27-52 (243)
201 cd04162 Arl9_Arfrp2_like Arl9/ 85.1 0.55 1.2E-05 44.9 2.1 19 534-552 2-20 (164)
202 cd03224 ABC_TM1139_LivF_branch 85.1 0.54 1.2E-05 46.9 2.1 25 530-554 25-49 (222)
203 cd03261 ABC_Org_Solvent_Resist 85.1 0.54 1.2E-05 47.6 2.1 25 531-555 26-50 (235)
204 PRK15177 Vi polysaccharide exp 85.1 0.52 1.1E-05 47.7 2.0 23 532-554 14-36 (213)
205 PRK05480 uridine/cytidine kina 85.1 0.58 1.3E-05 46.6 2.3 23 530-552 5-27 (209)
206 PF13479 AAA_24: AAA domain 84.8 0.56 1.2E-05 47.6 2.1 23 529-551 1-23 (213)
207 cd03225 ABC_cobalt_CbiO_domain 84.8 0.57 1.2E-05 46.5 2.1 24 531-554 27-50 (211)
208 COG3638 ABC-type phosphate/pho 84.8 0.65 1.4E-05 49.6 2.6 38 533-570 32-81 (258)
209 PRK11629 lolD lipoprotein tran 84.8 0.57 1.2E-05 47.5 2.1 23 532-554 36-58 (233)
210 cd04131 Rnd Rnd subfamily. Th 84.7 0.6 1.3E-05 45.7 2.3 21 532-552 2-22 (178)
211 cd03256 ABC_PhnC_transporter A 84.7 0.54 1.2E-05 47.5 2.0 26 530-555 26-51 (241)
212 PRK13543 cytochrome c biogenes 84.7 0.58 1.2E-05 47.0 2.1 27 530-556 36-62 (214)
213 COG1120 FepC ABC-type cobalami 84.7 0.53 1.2E-05 50.3 2.0 21 534-554 31-51 (258)
214 PRK11264 putative amino-acid A 84.7 0.57 1.2E-05 47.8 2.1 25 530-554 28-52 (250)
215 PRK14242 phosphate transporter 84.7 0.57 1.2E-05 48.0 2.1 23 530-552 31-53 (253)
216 TIGR01166 cbiO cobalt transpor 84.6 0.56 1.2E-05 46.0 2.0 24 532-555 19-42 (190)
217 cd01898 Obg Obg subfamily. Th 84.6 0.58 1.3E-05 43.7 2.0 20 533-552 2-21 (170)
218 cd03263 ABC_subfamily_A The AB 84.6 0.56 1.2E-05 46.8 2.0 24 532-555 29-52 (220)
219 cd04148 RGK RGK subfamily. Th 84.6 0.57 1.2E-05 47.5 2.0 21 532-552 1-21 (221)
220 COG4598 HisP ABC-type histidin 84.6 1.9 4E-05 45.1 5.6 24 534-557 35-58 (256)
221 PRK13540 cytochrome c biogenes 84.5 0.6 1.3E-05 46.3 2.1 26 530-555 26-51 (200)
222 cd03293 ABC_NrtD_SsuB_transpor 84.5 0.6 1.3E-05 46.8 2.1 25 531-555 30-54 (220)
223 TIGR03238 dnd_assoc_3 dnd syst 84.4 0.8 1.7E-05 53.0 3.4 21 530-550 31-51 (504)
224 cd03257 ABC_NikE_OppD_transpor 84.4 0.6 1.3E-05 46.7 2.1 26 530-555 30-55 (228)
225 cd03252 ABCC_Hemolysin The ABC 84.4 0.59 1.3E-05 47.3 2.1 25 530-554 27-51 (237)
226 PRK05057 aroK shikimate kinase 84.4 0.61 1.3E-05 45.9 2.1 21 532-552 5-25 (172)
227 KOG1818 Membrane trafficking a 84.4 0.37 8E-06 56.9 0.7 47 272-318 166-218 (634)
228 cd03232 ABC_PDR_domain2 The pl 84.4 0.63 1.4E-05 46.1 2.2 23 530-552 32-54 (192)
229 cd03229 ABC_Class3 This class 84.3 0.59 1.3E-05 45.6 2.0 26 530-555 25-50 (178)
230 PF13191 AAA_16: AAA ATPase do 84.2 0.61 1.3E-05 44.3 2.0 23 530-552 23-45 (185)
231 PRK10771 thiQ thiamine transpo 84.2 0.61 1.3E-05 47.2 2.1 26 530-555 24-49 (232)
232 cd04102 RabL3 RabL3 (Rab-like3 84.2 0.62 1.3E-05 47.3 2.1 21 532-552 1-21 (202)
233 cd03222 ABC_RNaseL_inhibitor T 84.2 0.58 1.3E-05 46.8 1.9 26 530-555 24-49 (177)
234 PF01363 FYVE: FYVE zinc finge 84.2 0.23 5E-06 41.8 -0.8 48 271-318 9-64 (69)
235 PRK14528 adenylate kinase; Pro 84.2 0.64 1.4E-05 46.2 2.2 24 532-555 2-25 (186)
236 cd03260 ABC_PstB_phosphate_tra 84.0 0.64 1.4E-05 46.7 2.1 26 530-555 25-50 (227)
237 PHA02530 pseT polynucleotide k 84.0 0.6 1.3E-05 48.8 2.0 19 534-552 5-23 (300)
238 TIGR01189 ccmA heme ABC export 84.0 0.65 1.4E-05 45.9 2.1 26 530-555 25-50 (198)
239 cd02025 PanK Pantothenate kina 84.0 0.61 1.3E-05 47.9 2.0 22 534-555 2-23 (220)
240 smart00174 RHO Rho (Ras homolo 84.0 0.56 1.2E-05 44.2 1.6 18 534-551 1-18 (174)
241 TIGR02770 nickel_nikD nickel i 83.9 0.62 1.3E-05 47.2 2.0 26 531-556 12-37 (230)
242 PRK00131 aroK shikimate kinase 83.9 0.66 1.4E-05 43.7 2.0 22 532-553 5-26 (175)
243 TIGR03015 pepcterm_ATPase puta 83.9 0.62 1.3E-05 47.6 2.0 23 531-553 43-65 (269)
244 cd04126 Rab20 Rab20 subfamily. 83.9 0.64 1.4E-05 47.8 2.1 21 532-552 1-21 (220)
245 cd03249 ABC_MTABC3_MDL1_MDL2 M 83.9 0.63 1.4E-05 47.1 2.1 26 530-555 28-53 (238)
246 cd03254 ABCC_Glucan_exporter_l 83.9 0.65 1.4E-05 46.6 2.1 25 530-554 28-52 (229)
247 cd00464 SK Shikimate kinase (S 83.8 0.67 1.5E-05 43.1 2.0 21 534-554 2-22 (154)
248 cd03297 ABC_ModC_molybdenum_tr 83.8 0.63 1.4E-05 46.5 2.0 24 532-555 24-47 (214)
249 cd03267 ABC_NatA_like Similar 83.8 0.66 1.4E-05 47.4 2.1 25 530-554 46-70 (236)
250 cd04147 Ras_dva Ras-dva subfam 83.8 0.63 1.4E-05 45.8 1.9 19 533-551 1-19 (198)
251 cd00882 Ras_like_GTPase Ras-li 83.8 0.47 1E-05 41.1 0.9 19 536-554 1-19 (157)
252 PRK10584 putative ABC transpor 83.8 0.64 1.4E-05 46.8 2.0 25 531-555 36-60 (228)
253 PRK10895 lipopolysaccharide AB 83.7 0.67 1.5E-05 47.1 2.1 26 530-555 28-53 (241)
254 cd03253 ABCC_ATM1_transporter 83.6 0.67 1.5E-05 46.8 2.1 26 530-555 26-51 (236)
255 COG4615 PvdE ABC-type sideroph 83.6 0.81 1.8E-05 52.2 2.9 41 532-572 350-399 (546)
256 KOG3362 Predicted BBOX Zn-fing 83.6 0.28 6E-06 48.6 -0.6 26 269-298 116-141 (156)
257 cd03295 ABC_OpuCA_Osmoprotecti 83.6 0.68 1.5E-05 47.2 2.1 25 531-555 27-51 (242)
258 PRK09825 idnK D-gluconate kina 83.6 0.66 1.4E-05 46.0 2.0 20 534-553 6-25 (176)
259 cd03215 ABC_Carb_Monos_II This 83.6 0.7 1.5E-05 45.3 2.1 25 531-555 26-50 (182)
260 cd03223 ABCD_peroxisomal_ALDP 83.6 0.7 1.5E-05 44.9 2.1 26 530-555 26-51 (166)
261 PRK10908 cell division protein 83.6 0.69 1.5E-05 46.4 2.1 26 530-555 27-52 (222)
262 PRK11248 tauB taurine transpor 83.5 0.68 1.5E-05 48.1 2.1 25 530-554 26-50 (255)
263 cd03296 ABC_CysA_sulfate_impor 83.5 0.69 1.5E-05 47.1 2.1 25 531-555 28-52 (239)
264 PRK14527 adenylate kinase; Pro 83.5 0.69 1.5E-05 45.7 2.0 24 532-555 7-30 (191)
265 PRK14241 phosphate transporter 83.4 0.69 1.5E-05 47.7 2.1 26 530-555 29-54 (258)
266 PRK15056 manganese/iron transp 83.4 0.68 1.5E-05 48.3 2.1 26 530-555 32-57 (272)
267 cd03230 ABC_DR_subfamily_A Thi 83.4 0.72 1.6E-05 44.8 2.1 26 530-555 25-50 (173)
268 cd03216 ABC_Carb_Monos_I This 83.4 0.73 1.6E-05 44.6 2.1 25 530-554 25-49 (163)
269 PRK14526 adenylate kinase; Pro 83.3 0.71 1.5E-05 47.4 2.1 20 533-552 2-21 (211)
270 PRK13539 cytochrome c biogenes 83.2 0.73 1.6E-05 46.1 2.1 26 530-555 27-52 (207)
271 PRK04182 cytidylate kinase; Pr 83.2 0.75 1.6E-05 43.8 2.1 20 533-552 2-21 (180)
272 PF02421 FeoB_N: Ferrous iron 83.2 0.78 1.7E-05 45.5 2.3 21 532-552 1-21 (156)
273 cd03251 ABCC_MsbA MsbA is an e 83.2 0.73 1.6E-05 46.5 2.1 26 530-555 27-52 (234)
274 PRK11614 livF leucine/isoleuci 83.2 0.72 1.6E-05 46.8 2.1 25 531-555 31-55 (237)
275 PRK11124 artP arginine transpo 83.1 0.73 1.6E-05 46.9 2.1 26 530-555 27-52 (242)
276 PF07728 AAA_5: AAA domain (dy 83.1 0.79 1.7E-05 42.4 2.2 19 534-552 2-20 (139)
277 cd00880 Era_like Era (E. coli 83.1 0.54 1.2E-05 41.6 1.0 16 536-551 1-16 (163)
278 PRK13638 cbiO cobalt transport 83.0 0.73 1.6E-05 48.0 2.1 24 531-554 27-50 (271)
279 PRK11176 lipid transporter ATP 82.9 1.2 2.6E-05 51.2 3.9 30 528-557 366-395 (582)
280 COG3842 PotA ABC-type spermidi 82.9 0.7 1.5E-05 51.4 2.0 23 534-556 34-56 (352)
281 cd04105 SR_beta Signal recogni 82.9 0.77 1.7E-05 46.1 2.1 20 533-552 2-21 (203)
282 PRK14738 gmk guanylate kinase; 82.8 0.78 1.7E-05 46.3 2.2 23 530-552 12-34 (206)
283 cd00267 ABC_ATPase ABC (ATP-bi 82.8 0.8 1.7E-05 43.5 2.1 26 531-556 25-50 (157)
284 TIGR03005 ectoine_ehuA ectoine 82.7 0.77 1.7E-05 47.1 2.1 27 530-556 25-51 (252)
285 PRK11300 livG leucine/isoleuci 82.7 0.77 1.7E-05 47.0 2.1 25 530-554 30-54 (255)
286 cd01130 VirB11-like_ATPase Typ 82.7 0.75 1.6E-05 45.5 2.0 22 530-551 24-45 (186)
287 TIGR01277 thiQ thiamine ABC tr 82.7 0.78 1.7E-05 45.9 2.1 26 530-555 23-48 (213)
288 TIGR01288 nodI ATP-binding ABC 82.7 0.76 1.6E-05 48.9 2.1 26 530-555 29-54 (303)
289 PRK09493 glnQ glutamine ABC tr 82.7 0.78 1.7E-05 46.6 2.1 26 531-556 27-52 (240)
290 PRK11247 ssuB aliphatic sulfon 82.6 0.77 1.7E-05 48.0 2.1 24 531-554 38-61 (257)
291 cd03237 ABC_RNaseL_inhibitor_d 82.6 0.77 1.7E-05 47.7 2.1 25 531-555 25-49 (246)
292 TIGR02323 CP_lyasePhnK phospho 82.6 0.78 1.7E-05 47.0 2.1 26 530-555 28-53 (253)
293 TIGR02769 nickel_nikE nickel i 82.6 0.78 1.7E-05 47.7 2.1 26 530-555 36-61 (265)
294 cd03268 ABC_BcrA_bacitracin_re 82.6 0.76 1.6E-05 45.6 2.0 22 531-552 26-47 (208)
295 cd03298 ABC_ThiQ_thiamine_tran 82.6 0.79 1.7E-05 45.6 2.1 25 531-555 24-48 (211)
296 PRK06762 hypothetical protein; 82.6 0.81 1.8E-05 43.7 2.1 23 533-555 4-26 (166)
297 cd03246 ABCC_Protease_Secretio 82.5 0.78 1.7E-05 44.6 2.0 25 531-555 28-52 (173)
298 cd03245 ABCC_bacteriocin_expor 82.5 0.8 1.7E-05 45.7 2.1 26 530-555 29-54 (220)
299 COG1121 ZnuC ABC-type Mn/Zn tr 82.5 0.76 1.6E-05 49.1 2.0 20 533-552 32-51 (254)
300 PRK14250 phosphate ABC transpo 82.4 0.8 1.7E-05 46.8 2.1 24 531-554 29-52 (241)
301 TIGR03411 urea_trans_UrtD urea 82.4 0.81 1.7E-05 46.5 2.1 26 530-555 27-52 (242)
302 PF10662 PduV-EutP: Ethanolami 82.3 0.81 1.8E-05 45.0 2.0 20 533-552 3-22 (143)
303 PRK14245 phosphate ABC transpo 82.3 0.78 1.7E-05 47.0 2.0 22 531-552 29-50 (250)
304 cd04133 Rop_like Rop subfamily 82.3 0.9 1.9E-05 44.8 2.3 21 532-552 2-22 (176)
305 PRK14737 gmk guanylate kinase; 82.2 0.8 1.7E-05 46.0 2.0 19 534-552 7-25 (186)
306 PLN00023 GTP-binding protein; 82.2 0.86 1.9E-05 50.4 2.4 24 529-552 19-42 (334)
307 TIGR01184 ntrCD nitrate transp 82.2 0.83 1.8E-05 46.5 2.1 23 532-554 12-34 (230)
308 PF06414 Zeta_toxin: Zeta toxi 82.1 0.9 1.9E-05 45.3 2.3 40 529-569 13-56 (199)
309 PRK13541 cytochrome c biogenes 82.1 0.86 1.9E-05 45.1 2.1 24 532-555 27-50 (195)
310 PRK11831 putative ABC transpor 82.1 0.83 1.8E-05 47.6 2.1 25 531-555 33-57 (269)
311 PRK14273 phosphate ABC transpo 82.1 0.84 1.8E-05 46.9 2.1 26 530-555 32-57 (254)
312 TIGR00972 3a0107s01c2 phosphat 82.0 0.81 1.8E-05 46.8 2.0 25 531-555 27-51 (247)
313 COG4559 ABC-type hemin transpo 81.9 0.8 1.7E-05 48.6 1.9 42 534-575 30-83 (259)
314 TIGR03574 selen_PSTK L-seryl-t 81.9 0.84 1.8E-05 47.0 2.1 19 534-552 2-20 (249)
315 PRK14267 phosphate ABC transpo 81.9 0.82 1.8E-05 46.8 2.0 26 530-555 29-54 (253)
316 cd01131 PilT Pilus retraction 81.9 0.83 1.8E-05 45.8 2.0 17 534-550 4-20 (198)
317 COG3839 MalK ABC-type sugar tr 81.9 0.81 1.7E-05 50.7 2.0 48 534-581 32-101 (338)
318 PLN02200 adenylate kinase fami 81.8 0.94 2E-05 47.1 2.4 25 528-552 40-64 (234)
319 TIGR02324 CP_lyasePhnL phospho 81.8 0.84 1.8E-05 45.8 2.0 26 530-555 33-58 (224)
320 PRK13651 cobalt transporter AT 81.8 0.84 1.8E-05 49.0 2.1 26 530-555 32-57 (305)
321 PRK00625 shikimate kinase; Pro 81.8 0.89 1.9E-05 45.3 2.1 20 533-552 2-21 (173)
322 PRK10418 nikD nickel transport 81.7 0.87 1.9E-05 46.9 2.1 26 530-555 28-53 (254)
323 TIGR01526 nadR_NMN_Atrans nico 81.7 0.91 2E-05 49.4 2.3 29 531-560 162-190 (325)
324 cd03228 ABCC_MRP_Like The MRP 81.7 0.87 1.9E-05 44.2 2.0 26 530-555 27-52 (171)
325 cd03240 ABC_Rad50 The catalyti 81.7 0.95 2.1E-05 45.7 2.3 21 533-553 24-44 (204)
326 PRK10247 putative ABC transpor 81.7 0.89 1.9E-05 46.0 2.1 25 530-554 32-56 (225)
327 PF04548 AIG1: AIG1 family; I 81.7 0.95 2.1E-05 45.8 2.3 20 532-551 1-20 (212)
328 TIGR03864 PQQ_ABC_ATP ABC tran 81.7 0.89 1.9E-05 46.2 2.1 26 530-555 26-51 (236)
329 PRK14240 phosphate transporter 81.7 0.89 1.9E-05 46.5 2.1 22 531-552 29-50 (250)
330 PRK13650 cbiO cobalt transport 81.7 0.87 1.9E-05 47.9 2.1 26 530-555 32-57 (279)
331 PRK14248 phosphate ABC transpo 81.6 0.84 1.8E-05 47.4 2.0 22 531-552 47-68 (268)
332 PRK14247 phosphate ABC transpo 81.6 0.89 1.9E-05 46.5 2.1 26 530-555 28-53 (250)
333 PRK13538 cytochrome c biogenes 81.6 0.91 2E-05 45.2 2.1 22 531-552 27-48 (204)
334 PRK01184 hypothetical protein; 81.6 0.96 2.1E-05 44.0 2.3 20 533-552 3-22 (184)
335 TIGR03771 anch_rpt_ABC anchore 81.6 0.89 1.9E-05 46.0 2.1 24 532-555 7-30 (223)
336 cd03213 ABCG_EPDR ABCG transpo 81.6 0.93 2E-05 45.1 2.2 26 530-555 34-59 (194)
337 KOG2355 Predicted ABC-type tra 81.5 0.9 1.9E-05 48.2 2.1 22 530-551 39-60 (291)
338 PRK08356 hypothetical protein; 81.5 0.91 2E-05 45.1 2.1 20 533-552 7-26 (195)
339 cd04142 RRP22 RRP22 subfamily. 81.5 0.9 2E-05 45.4 2.1 20 532-551 1-20 (198)
340 PRK14251 phosphate ABC transpo 81.4 0.92 2E-05 46.4 2.1 24 531-554 30-53 (251)
341 PF04670 Gtr1_RagA: Gtr1/RagA 81.4 0.96 2.1E-05 47.5 2.3 18 533-550 1-18 (232)
342 cd01896 DRG The developmentall 81.4 0.91 2E-05 46.8 2.1 21 533-553 2-22 (233)
343 cd03217 ABC_FeS_Assembly ABC-t 81.4 0.93 2E-05 45.2 2.1 25 530-554 25-49 (200)
344 PRK14256 phosphate ABC transpo 81.4 0.87 1.9E-05 46.7 2.0 25 531-555 30-54 (252)
345 PRK10575 iron-hydroxamate tran 81.4 0.91 2E-05 47.2 2.1 26 530-555 36-61 (265)
346 cd03248 ABCC_TAP TAP, the Tran 81.4 0.93 2E-05 45.6 2.1 25 530-554 39-63 (226)
347 cd03236 ABC_RNaseL_inhibitor_d 81.4 0.91 2E-05 47.6 2.1 27 530-556 25-51 (255)
348 PRK14239 phosphate transporter 81.4 0.92 2E-05 46.3 2.1 22 531-552 31-52 (252)
349 PRK09580 sufC cysteine desulfu 81.4 0.92 2E-05 46.1 2.1 25 530-554 26-50 (248)
350 PRK10744 pstB phosphate transp 81.3 0.91 2E-05 46.9 2.1 25 530-554 38-62 (260)
351 cd03227 ABC_Class2 ABC-type Cl 81.3 1 2.3E-05 43.5 2.4 25 532-556 22-46 (162)
352 TIGR03740 galliderm_ABC gallid 81.3 0.94 2E-05 45.5 2.1 25 530-554 25-49 (223)
353 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 81.3 0.94 2E-05 46.0 2.1 26 530-555 47-72 (224)
354 PRK14260 phosphate ABC transpo 81.3 0.93 2E-05 46.9 2.1 25 531-555 33-57 (259)
355 TIGR01188 drrA daunorubicin re 81.2 0.92 2E-05 48.3 2.1 24 531-554 19-42 (302)
356 PRK13645 cbiO cobalt transport 81.2 0.93 2E-05 47.8 2.1 24 531-554 37-60 (289)
357 PRK10790 putative multidrug tr 81.1 1.4 3.1E-05 50.8 3.8 31 527-557 363-393 (592)
358 TIGR00101 ureG urease accessor 81.1 0.99 2.2E-05 45.7 2.2 21 532-552 2-22 (199)
359 PRK14274 phosphate ABC transpo 81.1 0.95 2E-05 46.7 2.1 23 531-553 38-60 (259)
360 COG1125 OpuBA ABC-type proline 81.1 1.2 2.5E-05 48.5 2.8 23 534-556 30-52 (309)
361 PRK14265 phosphate ABC transpo 81.1 0.94 2E-05 47.5 2.1 25 530-554 45-69 (274)
362 PRK13634 cbiO cobalt transport 81.0 0.89 1.9E-05 48.2 1.9 26 530-555 32-57 (290)
363 PRK13646 cbiO cobalt transport 81.0 0.95 2.1E-05 47.8 2.1 27 530-556 32-58 (286)
364 cd03233 ABC_PDR_domain1 The pl 80.9 0.98 2.1E-05 45.2 2.1 26 531-556 33-58 (202)
365 PRK14238 phosphate transporter 80.9 0.97 2.1E-05 47.3 2.1 25 530-554 49-73 (271)
366 PF13401 AAA_22: AAA domain; P 80.9 1 2.2E-05 40.6 2.0 22 534-555 7-28 (131)
367 PRK14529 adenylate kinase; Pro 80.9 1.1 2.4E-05 46.7 2.6 24 533-556 2-25 (223)
368 TIGR01193 bacteriocin_ABC ABC- 80.9 1.5 3.2E-05 52.0 3.8 29 529-557 498-526 (708)
369 PRK13649 cbiO cobalt transport 80.9 0.97 2.1E-05 47.3 2.1 24 531-554 33-56 (280)
370 PRK11231 fecE iron-dicitrate t 80.9 0.98 2.1E-05 46.5 2.1 26 530-555 27-52 (255)
371 smart00072 GuKc Guanylate kina 80.8 0.98 2.1E-05 44.5 2.0 21 534-554 5-25 (184)
372 cd03221 ABCF_EF-3 ABCF_EF-3 E 80.8 0.99 2.1E-05 43.0 2.0 26 530-555 25-50 (144)
373 cd03290 ABCC_SUR1_N The SUR do 80.8 0.96 2.1E-05 45.3 2.0 25 530-554 26-50 (218)
374 PRK14262 phosphate ABC transpo 80.8 0.99 2.2E-05 46.2 2.1 25 530-554 28-52 (250)
375 cd04174 Rnd1_Rho6 Rnd1/Rho6 su 80.8 1.1 2.3E-05 46.8 2.3 23 529-551 11-33 (232)
376 PRK13657 cyclic beta-1,2-gluca 80.8 1.5 3.3E-05 50.6 3.8 29 529-557 359-387 (588)
377 cd03369 ABCC_NFT1 Domain 2 of 80.8 1 2.2E-05 44.8 2.1 26 530-555 33-58 (207)
378 cd03244 ABCC_MRP_domain2 Domai 80.7 0.97 2.1E-05 45.2 2.0 24 532-555 31-54 (221)
379 cd01853 Toc34_like Toc34-like 80.7 1.1 2.4E-05 47.1 2.5 27 525-551 25-51 (249)
380 PRK09544 znuC high-affinity zi 80.6 1 2.2E-05 46.9 2.1 25 530-554 29-53 (251)
381 PF00009 GTP_EFTU: Elongation 80.6 1.2 2.7E-05 43.5 2.6 25 529-553 1-25 (188)
382 TIGR03375 type_I_sec_LssB type 80.6 1.6 3.5E-05 51.4 4.1 29 529-557 489-517 (694)
383 PRK14268 phosphate ABC transpo 80.5 0.97 2.1E-05 46.7 2.0 24 531-554 38-61 (258)
384 TIGR03420 DnaA_homol_Hda DnaA 80.5 1.2 2.7E-05 44.2 2.6 25 527-551 34-58 (226)
385 PRK13637 cbiO cobalt transport 80.5 0.99 2.1E-05 47.8 2.1 26 530-555 32-57 (287)
386 cd03231 ABC_CcmA_heme_exporter 80.5 1.1 2.3E-05 44.7 2.1 26 530-555 25-50 (201)
387 CHL00131 ycf16 sulfate ABC tra 80.5 1 2.2E-05 46.0 2.1 23 530-552 32-54 (252)
388 PF03215 Rad17: Rad17 cell cyc 80.4 0.66 1.4E-05 53.9 0.7 36 517-552 30-66 (519)
389 COG4098 comFA Superfamily II D 80.4 0.54 1.2E-05 52.6 0.0 37 271-311 39-75 (441)
390 PRK14261 phosphate ABC transpo 80.4 1 2.2E-05 46.2 2.1 22 531-552 32-53 (253)
391 cd02027 APSK Adenosine 5'-phos 80.3 1 2.3E-05 43.2 2.0 21 534-554 2-22 (149)
392 PRK13947 shikimate kinase; Pro 80.3 1.1 2.4E-05 42.8 2.1 20 533-552 3-22 (171)
393 PRK14235 phosphate transporter 80.3 1 2.3E-05 46.9 2.1 25 531-555 45-69 (267)
394 PRK14269 phosphate ABC transpo 80.3 1.1 2.3E-05 46.0 2.1 24 531-554 28-51 (246)
395 cd03114 ArgK-like The function 80.3 1 2.2E-05 43.6 1.9 22 534-555 2-23 (148)
396 cd01858 NGP_1 NGP-1. Autoanti 80.3 1.3 2.8E-05 42.2 2.6 24 529-552 100-123 (157)
397 COG1127 Ttg2A ABC-type transpo 80.2 1.5 3.3E-05 47.0 3.3 36 534-569 37-84 (263)
398 PRK14259 phosphate ABC transpo 80.2 1.1 2.3E-05 47.0 2.1 23 530-552 38-60 (269)
399 PF00735 Septin: Septin; Inte 80.2 1.2 2.6E-05 47.8 2.5 21 531-551 4-24 (281)
400 cd04120 Rab12 Rab12 subfamily. 80.1 1.1 2.4E-05 45.3 2.2 21 532-552 1-21 (202)
401 cd03294 ABC_Pro_Gly_Bertaine T 80.1 1 2.2E-05 47.1 2.0 26 530-555 49-74 (269)
402 PRK14255 phosphate ABC transpo 80.1 1 2.2E-05 46.1 2.0 23 531-553 31-53 (252)
403 cd04173 Rnd2_Rho7 Rnd2/Rho7 su 80.0 1.1 2.5E-05 46.1 2.3 21 532-552 2-22 (222)
404 COG1116 TauB ABC-type nitrate/ 80.0 0.95 2.1E-05 48.3 1.7 20 533-552 31-50 (248)
405 PRK14244 phosphate ABC transpo 79.9 1.1 2.4E-05 45.9 2.1 22 531-552 31-52 (251)
406 PRK09984 phosphonate/organopho 79.9 1.1 2.4E-05 46.4 2.1 27 530-556 29-55 (262)
407 PRK14272 phosphate ABC transpo 79.9 1.1 2.4E-05 45.8 2.1 25 531-555 30-54 (252)
408 PRK06547 hypothetical protein; 79.9 1.4 3E-05 43.9 2.7 26 526-551 10-35 (172)
409 PRK14237 phosphate transporter 79.8 1.1 2.3E-05 46.8 2.0 25 531-555 46-70 (267)
410 PF09439 SRPRB: Signal recogni 79.7 1.2 2.5E-05 45.4 2.1 20 533-552 5-24 (181)
411 PRK13548 hmuV hemin importer A 79.7 1.1 2.4E-05 46.4 2.1 24 531-554 28-51 (258)
412 TIGR03797 NHPM_micro_ABC2 NHPM 79.7 1.7 3.6E-05 51.3 3.8 29 529-557 477-505 (686)
413 PRK13648 cbiO cobalt transport 79.7 1.1 2.4E-05 46.6 2.1 26 530-555 34-59 (269)
414 PRK15112 antimicrobial peptide 79.5 1.1 2.5E-05 46.6 2.1 27 530-556 38-64 (267)
415 cd02026 PRK Phosphoribulokinas 79.4 1.9 4.1E-05 46.0 3.7 19 534-552 2-20 (273)
416 TIGR03873 F420-0_ABC_ATP propo 79.3 1.2 2.6E-05 45.9 2.1 26 530-555 26-51 (256)
417 COG1117 PstB ABC-type phosphat 79.1 1.1 2.3E-05 47.6 1.8 22 535-556 37-58 (253)
418 cd03278 ABC_SMC_barmotin Barmo 79.1 1.3 2.9E-05 44.5 2.3 24 533-556 24-47 (197)
419 PRK10253 iron-enterobactin tra 79.1 1.2 2.6E-05 46.3 2.1 26 530-555 32-57 (265)
420 PF01443 Viral_helicase1: Vira 79.1 1 2.2E-05 44.8 1.6 18 534-551 1-18 (234)
421 cd01850 CDC_Septin CDC/Septin. 79.1 1.3 2.8E-05 47.1 2.4 22 530-551 3-24 (276)
422 cd00881 GTP_translation_factor 79.0 1.3 2.8E-05 41.8 2.1 20 533-552 1-20 (189)
423 PF00625 Guanylate_kin: Guanyl 79.0 1.2 2.6E-05 43.7 2.0 19 534-552 5-23 (183)
424 PRK14243 phosphate transporter 79.0 1.2 2.6E-05 46.3 2.1 24 530-553 35-58 (264)
425 PRK14270 phosphate ABC transpo 79.0 1.2 2.6E-05 45.7 2.0 24 531-554 30-53 (251)
426 cd03250 ABCC_MRP_domain1 Domai 78.9 1.3 2.8E-05 44.0 2.2 25 530-554 30-54 (204)
427 TIGR02868 CydC thiol reductant 78.8 1.3 2.9E-05 50.3 2.5 31 527-557 357-387 (529)
428 cd03273 ABC_SMC2_euk Eukaryoti 78.8 1.3 2.9E-05 45.6 2.3 24 533-556 27-50 (251)
429 PRK10619 histidine/lysine/argi 78.7 1.2 2.6E-05 45.9 2.0 26 530-555 30-55 (257)
430 PRK13644 cbiO cobalt transport 78.6 1.2 2.6E-05 46.7 2.0 26 530-555 27-52 (274)
431 PRK13547 hmuV hemin importer A 78.6 1.2 2.6E-05 47.0 2.0 25 531-555 27-51 (272)
432 PRK03695 vitamin B12-transport 78.5 1.2 2.7E-05 45.9 2.0 22 531-552 22-43 (248)
433 cd02020 CMPK Cytidine monophos 78.5 1.3 2.9E-05 40.6 2.0 19 534-552 2-20 (147)
434 TIGR00968 3a0106s01 sulfate AB 78.5 1.3 2.8E-05 45.2 2.1 26 530-555 25-50 (237)
435 TIGR02982 heterocyst_DevA ABC 78.5 1.3 2.9E-05 44.5 2.1 26 530-555 30-55 (220)
436 PRK13647 cbiO cobalt transport 78.4 1.3 2.8E-05 46.6 2.1 27 530-556 30-56 (274)
437 COG1131 CcmA ABC-type multidru 78.4 1.2 2.7E-05 47.7 2.0 19 534-552 34-52 (293)
438 COG1118 CysA ABC-type sulfate/ 78.3 1.2 2.7E-05 49.1 2.0 20 533-552 30-49 (345)
439 PRK13641 cbiO cobalt transport 78.3 1.3 2.8E-05 46.8 2.1 25 531-555 33-57 (287)
440 PLN02674 adenylate kinase 78.3 1.6 3.4E-05 46.3 2.7 29 528-556 28-56 (244)
441 cd01857 HSR1_MMR1 HSR1/MMR1. 78.3 1.4 3.1E-05 41.4 2.2 20 533-552 85-104 (141)
442 PRK10419 nikE nickel transport 78.2 1.3 2.9E-05 46.2 2.1 26 530-555 37-62 (268)
443 PRK13643 cbiO cobalt transport 78.2 1.3 2.8E-05 47.0 2.0 27 530-556 31-57 (288)
444 PRK13546 teichoic acids export 78.2 1.3 2.9E-05 46.5 2.1 25 530-554 49-73 (264)
445 TIGR03522 GldA_ABC_ATP gliding 78.2 1.3 2.7E-05 47.3 2.0 24 532-555 29-52 (301)
446 PRK14253 phosphate ABC transpo 78.1 1.3 2.8E-05 45.3 2.0 26 530-555 28-53 (249)
447 cd02028 UMPK_like Uridine mono 78.1 1.4 3E-05 43.8 2.1 21 534-554 2-22 (179)
448 PRK14275 phosphate ABC transpo 78.1 1.3 2.9E-05 46.8 2.1 23 531-553 65-87 (286)
449 PRK13639 cbiO cobalt transport 78.1 1.3 2.8E-05 46.5 2.0 26 530-555 27-52 (275)
450 PF00485 PRK: Phosphoribulokin 78.0 2 4.3E-05 42.6 3.2 27 534-560 2-28 (194)
451 PRK13632 cbiO cobalt transport 78.0 1.3 2.8E-05 46.3 2.0 25 531-555 35-59 (271)
452 PRK13537 nodulation ABC transp 78.0 1.3 2.8E-05 47.5 2.0 26 531-556 33-58 (306)
453 PRK14271 phosphate ABC transpo 77.9 1.4 3E-05 46.4 2.1 26 530-555 46-71 (276)
454 PRK00889 adenylylsulfate kinas 77.8 1.4 3E-05 42.7 2.0 20 533-552 6-25 (175)
455 PRK13652 cbiO cobalt transport 77.8 1.3 2.9E-05 46.4 2.0 26 530-555 29-54 (277)
456 PRK10938 putative molybdenum t 77.8 1.3 2.9E-05 49.9 2.1 24 531-554 29-52 (490)
457 cd03288 ABCC_SUR2 The SUR doma 77.7 1.4 3E-05 45.6 2.1 25 530-554 46-70 (257)
458 PRK05541 adenylylsulfate kinas 77.7 1.4 3E-05 42.7 2.0 22 531-552 7-28 (176)
459 cd03275 ABC_SMC1_euk Eukaryoti 77.6 1.5 3.3E-05 45.2 2.4 23 534-556 25-47 (247)
460 TIGR00554 panK_bact pantothena 77.6 1.5 3.1E-05 47.6 2.2 26 529-554 60-85 (290)
461 cd01672 TMPK Thymidine monopho 77.6 1.5 3.3E-05 42.0 2.1 19 534-552 3-21 (200)
462 TIGR02173 cyt_kin_arch cytidyl 77.6 1.6 3.4E-05 41.4 2.2 20 533-552 2-21 (171)
463 PRK11153 metN DL-methionine tr 77.5 1.4 3E-05 48.1 2.1 27 530-556 30-56 (343)
464 PF12846 AAA_10: AAA-like doma 77.5 1.3 2.9E-05 44.9 1.9 19 533-551 3-21 (304)
465 cd03284 ABC_MutS1 MutS1 homolo 77.5 1.6 3.5E-05 44.7 2.5 22 532-553 31-52 (216)
466 cd00065 FYVE FYVE domain; Zinc 77.5 0.94 2E-05 36.6 0.6 47 272-318 3-55 (57)
467 PRK14252 phosphate ABC transpo 77.5 1.4 3.1E-05 45.6 2.1 25 530-554 41-65 (265)
468 PRK15093 antimicrobial peptide 77.4 1.4 2.9E-05 47.9 2.0 24 531-554 33-56 (330)
469 cd02022 DPCK Dephospho-coenzym 77.4 1.5 3.2E-05 43.2 2.1 21 533-553 1-21 (179)
470 PRK13536 nodulation factor exp 77.3 1.4 3E-05 48.3 2.0 26 531-556 67-92 (340)
471 PRK11000 maltose/maltodextrin 77.3 1.4 3E-05 48.7 2.1 24 532-555 30-53 (369)
472 PF13476 AAA_23: AAA domain; P 77.3 1.6 3.5E-05 41.7 2.2 23 534-556 22-44 (202)
473 TIGR02142 modC_ABC molybdenum 77.2 1.4 3E-05 48.3 2.0 23 533-555 25-47 (354)
474 PRK13631 cbiO cobalt transport 77.2 1.5 3.2E-05 47.6 2.1 27 530-556 51-77 (320)
475 TIGR03269 met_CoM_red_A2 methy 77.0 1.4 3.1E-05 50.1 2.1 24 531-554 26-49 (520)
476 PRK11144 modC molybdate transp 76.9 1.5 3.2E-05 48.0 2.1 23 532-554 25-47 (352)
477 TIGR02204 MsbA_rel ABC transpo 76.9 1.4 3.1E-05 50.3 2.1 31 527-557 362-392 (576)
478 cd03300 ABC_PotA_N PotA is an 76.9 1.6 3.4E-05 44.4 2.1 26 530-555 25-50 (232)
479 PRK15467 ethanolamine utilizat 76.8 1.6 3.5E-05 42.0 2.1 20 533-552 3-22 (158)
480 cd04171 SelB SelB subfamily. 76.8 1.6 3.6E-05 40.1 2.1 19 534-552 3-21 (164)
481 PRK15064 ABC transporter ATP-b 76.7 1.5 3.3E-05 50.1 2.2 25 530-554 26-50 (530)
482 cd01887 IF2_eIF5B IF2/eIF5B (i 76.7 1.8 3.8E-05 40.3 2.3 20 533-552 2-21 (168)
483 PRK14266 phosphate ABC transpo 76.5 1.5 3.3E-05 44.8 2.0 22 531-552 29-50 (250)
484 cd01873 RhoBTB RhoBTB subfamil 76.4 1.7 3.7E-05 43.5 2.3 20 531-550 2-21 (195)
485 PRK14249 phosphate ABC transpo 76.4 1.6 3.5E-05 44.7 2.1 25 531-555 30-54 (251)
486 cd03282 ABC_MSH4_euk MutS4 hom 76.4 1.8 3.8E-05 44.2 2.4 20 534-553 32-51 (204)
487 PRK13549 xylose transporter AT 76.3 1.5 3.3E-05 49.8 2.1 26 530-555 30-55 (506)
488 PRK13635 cbiO cobalt transport 76.3 1.5 3.3E-05 46.2 1.9 23 533-555 35-57 (279)
489 TIGR01618 phage_P_loop phage n 76.3 1.6 3.4E-05 45.6 2.0 23 530-552 11-33 (220)
490 TIGR02524 dot_icm_DotB Dot/Icm 76.3 1.5 3.3E-05 48.6 2.0 20 532-551 135-154 (358)
491 PRK11174 cysteine/glutathione 76.2 1.5 3.3E-05 50.4 2.1 28 528-555 373-400 (588)
492 cd03291 ABCC_CFTR1 The CFTR su 76.1 1.6 3.5E-05 46.5 2.1 26 530-555 62-87 (282)
493 PRK14730 coaE dephospho-CoA ki 76.0 1.9 4.2E-05 43.4 2.5 25 532-556 2-26 (195)
494 PRK13633 cobalt transporter AT 76.0 1.6 3.4E-05 45.9 2.0 24 532-555 37-60 (280)
495 COG4175 ProV ABC-type proline/ 76.0 2.8 6.1E-05 46.8 3.9 36 534-569 57-104 (386)
496 PRK09536 btuD corrinoid ABC tr 76.0 1.5 3.2E-05 49.4 1.8 25 531-555 29-53 (402)
497 PRK03731 aroL shikimate kinase 75.9 1.8 3.8E-05 41.6 2.1 24 533-556 4-27 (171)
498 COG2884 FtsE Predicted ATPase 75.8 1.7 3.6E-05 45.6 2.0 23 534-556 31-53 (223)
499 PRK10762 D-ribose transporter 75.8 1.6 3.5E-05 49.5 2.1 25 531-555 30-54 (501)
500 PF00406 ADK: Adenylate kinase 75.8 1.6 3.4E-05 41.4 1.7 21 536-556 1-21 (151)
No 1
>KOG0082 consensus G-protein alpha subunit (small G protein superfamily) [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=100.00 E-value=9.3e-47 Score=402.45 Aligned_cols=199 Identities=31% Similarity=0.432 Sum_probs=168.2
Q ss_pred ccccccccccch-hHHHhcceeeEEEeecCCCCchhHHhHhhhhhcCCCCCHHHHhhhhHHHHHHHHHHHHHHHhhhcch
Q 004481 512 EQGSGLMSRSVP-DYIERRTLQKLLLVGCSGSGTSTIFKQAKILYKAVPFSDDEHENIKLKIQSNAYGYLGILLEGRERF 590 (750)
Q Consensus 512 kriSd~IDrsLq-dk~~~kr~iKLLLLGaGESGKSTILKQMKILh~~~GFSeeER~~~K~IIqsNIi~smkiLLeamE~f 590 (750)
.+.|..||++|+ ++.+.++.+||||||+||||||||+|||||||. +|||++|+..+|.+||.|++++|..||++|+.+
T Consensus 13 ~~~~~~I~~~l~~~~~~~~~~iKlLLLGageSGKSTI~KQmkilh~-~gfs~ee~~~~r~~I~~N~~~~~~~ll~a~~~~ 91 (354)
T KOG0082|consen 13 VKRSKEIDKQLKKEKKKEKKIIKLLLLGAGESGKSTIVKQMKILHG-DGFSEEELLEYRPVIYSNIIQSLKALLRAMETL 91 (354)
T ss_pred chhhhhhhHHHHHHHHhhhhheeeeeecCCCCchHHHHHHHHHHhc-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 336999999998 888999999999999999999999999999999 999999999999999999999999999999977
Q ss_pred hhhHHHhhhhcCCCCCCCCCCCCCCcCCcceeccchhhHHhHHHHHhhhhcCCccccCCccchhHHHHHHHHhccHHHHH
Q 004481 591 EEEILGEKRKKQSSDETNPVGSSDSTDGKTIYTIGPRLKAFSDWLLKTMVSGNLEAIFPAATREYSPLVEELWKDAAIQA 670 (750)
Q Consensus 591 eie~l~e~r~l~spdes~~~g~~~~~ndr~IySi~~~lkafsd~lLe~~~~gdld~~fp~lt~E~A~aI~eLWkDpgIQ~ 670 (750)
++++. ++...++. ..+....... + ..+++++|++++|++||+|++||+
T Consensus 92 ~i~~~----------------~~~~~~d~-------------~~~~~~~~~~--~-~~~~~~~e~~~~i~~lW~d~~Iq~ 139 (354)
T KOG0082|consen 92 GINLD----------------DPERENDA-------------QKLTLLADAA--E-ELGVFSPELAEAIKELWKDPGIQA 139 (354)
T ss_pred cCCCC----------------ChhhhhHH-------------HHHHHhhhcc--c-ccccCCHHHHHHHHHHHcCHHHHH
Confidence 66532 11111110 1111111111 1 113467899999999999999999
Q ss_pred HHhhcchhhhhhhhHhhhhhhcccccCCCCCCCccceeeeecccCCCCeEEEEEEcCCCCCCCccCCCCCCCccccc
Q 004481 671 TYSRRSELEMLSSVASYFLERVVDISRTDYEPSDLDILYAEGVTSSNGLACVDFSFPRSASDDSVDTADQHDSLLRW 747 (750)
Q Consensus 671 ~y~RRnEFqlLpDSA~YFLDnIdRIaspDYvPTDqDILRARvkTtsnGI~E~eFs~~~~s~~~~~d~~~~~~~~~~y 747 (750)
||+||+||+ |+|+|.|||+|++||++|+|+||++||||+|++|+ ||+|+.|++++ -....+|+++|.+.+.|+
T Consensus 140 ~~~r~~e~~-l~Dsa~Yfl~~l~rI~~~~Y~PT~~DIL~~R~~T~--GI~e~~F~~k~-~~f~~~DvGGQRseRrKW 212 (354)
T KOG0082|consen 140 CYERRREFQ-LNDSAKYFLENLDRISSPDYVPTEQDILRSRVPTT--GIVEVEFTIKG-LKFRMFDVGGQRSERKKW 212 (354)
T ss_pred HHHcCCcCC-CCccHHHHHHhHHHhcCCCCCCCHHHHHhhccCcC--CeeEEEEEeCC-CceEEEeCCCcHHHhhhH
Confidence 999999999 79999999999999999999999999999999998 99999999999 556789999998877765
No 2
>KOG0085 consensus G protein subunit Galphaq/Galphay, small G protein superfamily [Signal transduction mechanisms]
Probab=100.00 E-value=7e-43 Score=354.70 Aligned_cols=202 Identities=24% Similarity=0.386 Sum_probs=172.6
Q ss_pred CCCccccccccccccch-hHHHhcceeeEEEeecCCCCchhHHhHhhhhhcCCCCCHHHHhhhhHHHHHHHHHHHHHHHh
Q 004481 507 SNPGAEQGSGLMSRSVP-DYIERRTLQKLLLVGCSGSGTSTIFKQAKILYKAVPFSDDEHENIKLKIQSNAYGYLGILLE 585 (750)
Q Consensus 507 ~~~eakriSd~IDrsLq-dk~~~kr~iKLLLLGaGESGKSTILKQMKILh~~~GFSeeER~~~K~IIqsNIi~smkiLLe 585 (750)
...+++++|.+|+++|+ +++..++++||||||+|||||||++|||||||+ .|||++++..+..+||.||+.+|+.+|+
T Consensus 14 e~ke~~ri~~eierql~rdkk~arrelkllllgtgesgkstfikqmriihg-~gyseedrkgf~~lvyqnif~amqaMIr 92 (359)
T KOG0085|consen 14 EEKEAARINQEIERQLRRDKKDARRELKLLLLGTGESGKSTFIKQMRIIHG-AGYSEEDRKGFTKLVYQNIFTAMQAMIR 92 (359)
T ss_pred hHHHHHHHHHHHHHHHHHHhHhhhhhheeeeecCCCcchhhHHHHHHhhhc-CCCChhhhccchHHHHHHHHHHHHHHHH
Confidence 34567899999999998 899999999999999999999999999999999 9999999999999999999999999999
Q ss_pred hhcchhhhHHHhhhhcCCCCCCCCCCCCCCcCCcceeccchhhHHhHHHHHhhhhcCCccccCCccchhHHHHHHHHhcc
Q 004481 586 GRERFEEEILGEKRKKQSSDETNPVGSSDSTDGKTIYTIGPRLKAFSDWLLKTMVSGNLEAIFPAATREYSPLVEELWKD 665 (750)
Q Consensus 586 amE~feie~l~e~r~l~spdes~~~g~~~~~ndr~IySi~~~lkafsd~lLe~~~~gdld~~fp~lt~E~A~aI~eLWkD 665 (750)
+|+.+.+.+.. +.+++.+..+++.. .+ ....+...|+.+|+.||.|
T Consensus 93 AMetL~I~y~~-----------------------------e~nk~~A~~vrevd----~e-kVttfe~~yv~aik~LW~D 138 (359)
T KOG0085|consen 93 AMETLKIPYKR-----------------------------EENKAHASLVREVD----VE-KVTTFEKRYVSAIKWLWRD 138 (359)
T ss_pred HHHHhcccccc-----------------------------ccchhhhhHhhhcc----hH-HhhhhhHHHHHHHHHHHhC
Confidence 99998876531 11233333333332 11 1223457899999999999
Q ss_pred HHHHHHHhhcchhhhhhhhHhhhhhhcccccCCCCCCCccceeeeecccCCCCeEEEEEEcCCCCCCCccCCCCCCCccc
Q 004481 666 AAIQATYSRRSELEMLSSVASYFLERVVDISRTDYEPSDLDILYAEGVTSSNGLACVDFSFPRSASDDSVDTADQHDSLL 745 (750)
Q Consensus 666 pgIQ~~y~RRnEFqlLpDSA~YFLDnIdRIaspDYvPTDqDILRARvkTtsnGI~E~eFs~~~~s~~~~~d~~~~~~~~~ 745 (750)
||||+||+||.||| |.|||.|||.+++||+.|+|+||.|||||.|++|+ ||.|+-|++.+ -.....|+++|.+.+.
T Consensus 139 ~GIqeCYdRRREyq-LsDSakYylsdldria~~~ylPTqQDvLRvRvPTT--Gi~eypfdl~~-iifrmvDvGGqrserr 214 (359)
T KOG0085|consen 139 PGIQECYDRRREYQ-LSDSAKYYLSDLDRIATPGYLPTQQDVLRVRVPTT--GIIEYPFDLQK-IIFRMVDVGGQRSERR 214 (359)
T ss_pred cchHHHHHHHHHhh-cchhhhHHhhhhhhhcCcccCcchhhhheeecCcc--cceecCcchhh-heeeeeecCCchhhhh
Confidence 99999999999999 68999999999999999999999999999999998 99999999876 3346779999887766
Q ss_pred cc
Q 004481 746 RW 747 (750)
Q Consensus 746 ~y 747 (750)
||
T Consensus 215 KW 216 (359)
T KOG0085|consen 215 KW 216 (359)
T ss_pred HH
Confidence 64
No 3
>KOG0099 consensus G protein subunit Galphas, small G protein superfamily [Signal transduction mechanisms]
Probab=100.00 E-value=1.2e-41 Score=349.84 Aligned_cols=202 Identities=27% Similarity=0.421 Sum_probs=176.2
Q ss_pred Cccccccccccccch-hHHHhcceeeEEEeecCCCCchhHHhHhhhhhcCCCCCHHHHhhhhHHHHHHHHHHHHHHHhhh
Q 004481 509 PGAEQGSGLMSRSVP-DYIERRTLQKLLLVGCSGSGTSTIFKQAKILYKAVPFSDDEHENIKLKIQSNAYGYLGILLEGR 587 (750)
Q Consensus 509 ~eakriSd~IDrsLq-dk~~~kr~iKLLLLGaGESGKSTILKQMKILh~~~GFSeeER~~~K~IIqsNIi~smkiLLeam 587 (750)
.+++++|..|+++|+ ++.-.+..+||||||+||||||||+|||||||- +||+++|+.+-..-|+.||-++|..|+.+|
T Consensus 17 ~~q~~~s~~i~~ql~~~k~~~~aThrlLLLGagESGKsTIvKQMRILHv-nGF~~~EkreKI~dI~~Ni~eai~~iv~aM 95 (379)
T KOG0099|consen 17 KAQREANKKIEKQLQKDKQVYRATHRLLLLGAGESGKSTIVKQMRILHV-NGFNDEEKREKIQDIKNNIKEAILTIVGAM 95 (379)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHhHHhheeccccccchhhhhhhheeee-cCCChHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 344677999999998 888889999999999999999999999999999 999999999999999999999999999998
Q ss_pred cchhhhHHHhhhhcCCCCCCCCCCCCCCcCCcceeccchhhHHhHHHHHhhhhcCCccccCCccchhHHHHHHHHhccHH
Q 004481 588 ERFEEEILGEKRKKQSSDETNPVGSSDSTDGKTIYTIGPRLKAFSDWLLKTMVSGNLEAIFPAATREYSPLVEELWKDAA 667 (750)
Q Consensus 588 E~feie~l~e~r~l~spdes~~~g~~~~~ndr~IySi~~~lkafsd~lLe~~~~gdld~~fp~lt~E~A~aI~eLWkDpg 667 (750)
..+..+. ++++++ +...+|+|++++... +.. +++|+.+.+.+||+|.|
T Consensus 96 ~~l~p~v--------------~l~~~~-------------~~~~~dYIls~~~~~--~~~---~~~Ef~dHv~~lW~D~G 143 (379)
T KOG0099|consen 96 SNLVPPV--------------ELANPE-------------NQFRVDYILSVMNSP--DFD---YPPEFYDHVKTLWEDEG 143 (379)
T ss_pred hccCCCc--------------ccCCcc-------------cchhHHHHHhcCCCC--ccc---CCHHHHHHHHHHhhhhh
Confidence 8765332 233332 233467888876432 333 34799999999999999
Q ss_pred HHHHHhhcchhhhhhhhHhhhhhhcccccCCCCCCCccceeeeecccCCCCeEEEEEEcCCCCCCCccCCCCCCCccccc
Q 004481 668 IQATYSRRSELEMLSSVASYFLERVVDISRTDYEPSDLDILYAEGVTSSNGLACVDFSFPRSASDDSVDTADQHDSLLRW 747 (750)
Q Consensus 668 IQ~~y~RRnEFqlLpDSA~YFLDnIdRIaspDYvPTDqDILRARvkTtsnGI~E~eFs~~~~s~~~~~d~~~~~~~~~~y 747 (750)
|++||+|+|||| |-|+|.||||++++|.+++|+||+|||||||+.|+ ||.|++|.++... .+.||+++|.|.+.||
T Consensus 144 v~acyeRSnEyq-LiDcAqYFLd~~~~i~~~~Y~Ps~qDiLrcRvlTs--GIfet~FqVdkv~-FhMfDVGGQRDeRrKW 219 (379)
T KOG0099|consen 144 VRACYERSNEYQ-LIDCAQYFLDKIDVIKQADYVPSDQDILRCRVLTS--GIFETKFQVDKVN-FHMFDVGGQRDERRKW 219 (379)
T ss_pred HHHHHhccCccc-hhhHHHHHHHhhheecccCCCCcHHHHHHhhhhcc--ceeeEEEeccccc-eeeeccCCchhhhhhH
Confidence 999999999999 57999999999999999999999999999999998 9999999999865 7899999999988876
No 4
>smart00275 G_alpha G protein alpha subunit. Subunit of G proteins that contains the guanine nucleotide binding site
Probab=100.00 E-value=6.8e-41 Score=356.42 Aligned_cols=198 Identities=27% Similarity=0.414 Sum_probs=163.9
Q ss_pred cccccccccch-hHHHhcceeeEEEeecCCCCchhHHhHhhhhhcCCCCCHHHHhhhhHHHHHHHHHHHHHHHhhhcchh
Q 004481 513 QGSGLMSRSVP-DYIERRTLQKLLLVGCSGSGTSTIFKQAKILYKAVPFSDDEHENIKLKIQSNAYGYLGILLEGRERFE 591 (750)
Q Consensus 513 riSd~IDrsLq-dk~~~kr~iKLLLLGaGESGKSTILKQMKILh~~~GFSeeER~~~K~IIqsNIi~smkiLLeamE~fe 591 (750)
+.|+.||++|+ ++++.++.+||||||+||||||||+||||+||. +||+.+|++.||.+||.|++++|+.||++++.++
T Consensus 2 ~~~~~Id~~l~~~~~~~~~~~klLLLG~geSGKSTi~KQmril~~-~gfs~~E~~~~~~~I~~Nii~~~~~ll~a~~~~~ 80 (342)
T smart00275 2 RRNKEIEKQLEEERKKKKREVKLLLLGAGESGKSTILKQMRILHG-DGFSQEERREYRPLIYSNILESMKALVDAMEELN 80 (342)
T ss_pred cchHHHHHHHHHhHHHhhcchheeeeecCCCcchhHHHHHHHhhc-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 46889999998 888889999999999999999999999999999 9999999999999999999999999999999887
Q ss_pred hhHHHhhhhcCCCCCCCCCCCCCCcCCcceeccchhhHHhHHHHHhhhh-cCCccccCCccchhHHHHHHHHhccHHHHH
Q 004481 592 EEILGEKRKKQSSDETNPVGSSDSTDGKTIYTIGPRLKAFSDWLLKTMV-SGNLEAIFPAATREYSPLVEELWKDAAIQA 670 (750)
Q Consensus 592 ie~l~e~r~l~spdes~~~g~~~~~ndr~IySi~~~lkafsd~lLe~~~-~gdld~~fp~lt~E~A~aI~eLWkDpgIQ~ 670 (750)
+++.. +.. ....+.+++... ....+ ..++++++++|..||+|++||+
T Consensus 81 i~~~~----------------~~~-------------~~~~~~~~~~~~~~~~~~---~~~~~e~~~~i~~LW~D~~iq~ 128 (342)
T smart00275 81 IPFED----------------PES-------------ILDIRIITEQFNKTDETE---NVLPKEIAKAIKALWKDEGIQE 128 (342)
T ss_pred CCCCC----------------hhh-------------HHHHHHHhcccccccccc---ccCCHHHHHHHHHHHCCHHHHH
Confidence 65421 000 011112222210 00111 1256799999999999999999
Q ss_pred HHhhcchhhhhhhhHhhhhhhcccccCCCCCCCccceeeeecccCCCCeEEEEEEcCCCCCCCccCCCCCCCccccc
Q 004481 671 TYSRRSELEMLSSVASYFLERVVDISRTDYEPSDLDILYAEGVTSSNGLACVDFSFPRSASDDSVDTADQHDSLLRW 747 (750)
Q Consensus 671 ~y~RRnEFqlLpDSA~YFLDnIdRIaspDYvPTDqDILRARvkTtsnGI~E~eFs~~~~s~~~~~d~~~~~~~~~~y 747 (750)
||.||++|+ |+|++.|||++++||++|+|+||++|||++|.+|+ ||.++.|.+++.. ...+|.++|...+.+|
T Consensus 129 ~~~~~~~~~-l~ds~~yf~~~~~ri~~~~y~Pt~~Dil~~r~~T~--Gi~~~~f~~~~~~-~~~~DvgGqr~~R~kW 201 (342)
T smart00275 129 CYRRRNEFQ-LNDSASYFLDNIDRIGDPDYVPTEQDILRSRVPTT--GIQETAFIVKKLF-FRMFDVGGQRSERKKW 201 (342)
T ss_pred HHHhccccc-cccchhHHHHHHHHHhCCCCCCCHHHhhheeCCcc--ceEEEEEEECCeE-EEEEecCCchhhhhhH
Confidence 999999999 79999999999999999999999999999999998 9999999998643 4678999886655544
No 5
>cd00066 G-alpha G protein alpha subunit. The alpha subunit of G proteins contains the guanine nucleotide binding site. The heterotrimeric GNP-binding proteins are signal transducers that communicate signals from many hormones, neurotransmitters, chemokines, and autocrine and paracrine factors. Extracellular signals are received by receptors, which activate the G proteins, which in turn route the signals to several distinct intracellular signaling pathways. The alpha subunit of G proteins is a weak GTPase. In the resting state, heterotrimeric G proteins are associated at the cytosolic face of the plasma membrane and the alpha subunit binds to GDP. Upon activation by a receptor GDP is replaced with GTP, and the G-alpha/GTP complex dissociates from the beta and gamma subunits. This results in activation of downstream signaling pathways, such as cAMP synthesis by adenylyl cyclase, which is terminated when GTP is hydrolized and the heterotrimers reconstitute.
Probab=100.00 E-value=5.5e-39 Score=337.88 Aligned_cols=178 Identities=34% Similarity=0.449 Sum_probs=148.2
Q ss_pred eeEEEeecCCCCchhHHhHhhhhhcCCCCCHHHHhhhhHHHHHHHHHHHHHHHhhhcchhhhHHHhhhhcCCCCCCCCCC
Q 004481 532 QKLLLVGCSGSGTSTIFKQAKILYKAVPFSDDEHENIKLKIQSNAYGYLGILLEGRERFEEEILGEKRKKQSSDETNPVG 611 (750)
Q Consensus 532 iKLLLLGaGESGKSTILKQMKILh~~~GFSeeER~~~K~IIqsNIi~smkiLLeamE~feie~l~e~r~l~spdes~~~g 611 (750)
+||||||+||||||||+|||||||+ +||+++||+.|+.+||.||+++|+.||++++.++++...
T Consensus 1 ~klLlLG~geSGKSTi~KQmril~~-~gfs~~Er~~~~~~I~~Ni~~~~~~ll~a~~~~~i~~~~--------------- 64 (317)
T cd00066 1 VKLLLLGAGESGKSTILKQMKILHG-DGFSEEELREYRPVIYSNILQSMKALLEAMERLNIPFGD--------------- 64 (317)
T ss_pred CeEEEecCCCccHHHHHHHHHHhcC-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCC---------------
Confidence 6999999999999999999999999 999999999999999999999999999999988765311
Q ss_pred CCCCcCCcceeccchhhHHhHHHHHhhhhcCCccccCCccchhHHHHHHHHhccHHHHHHHhhcchhhhhhhhHhhhhhh
Q 004481 612 SSDSTDGKTIYTIGPRLKAFSDWLLKTMVSGNLEAIFPAATREYSPLVEELWKDAAIQATYSRRSELEMLSSVASYFLER 691 (750)
Q Consensus 612 ~~~~~ndr~IySi~~~lkafsd~lLe~~~~gdld~~fp~lt~E~A~aI~eLWkDpgIQ~~y~RRnEFqlLpDSA~YFLDn 691 (750)
+ .+...++.++..... .....++++++++|.+||+|++||+||+||++|+ |+|++.|||++
T Consensus 65 -~-------------~~~~~~~~i~~~~~~----~~~~~~~~~~~~~i~~lW~d~~iq~~~~~r~e~~-l~d~~~yf~~~ 125 (317)
T cd00066 65 -P-------------ENEKDAKKILSFAPE----LEEGELPPELAEAIKELWKDPGIQACYDRRNEFQ-LNDSAKYFLDN 125 (317)
T ss_pred -h-------------hhHHHHHHHHhcccc----ccccCCCHHHHHHHHHHhCCHHHHHHHHhccccc-cccchHHHHHh
Confidence 1 111122333332111 0112356899999999999999999999999999 79999999999
Q ss_pred cccccCCCCCCCccceeeeecccCCCCeEEEEEEcCCCCCCCccCCCCCCCccccc
Q 004481 692 VVDISRTDYEPSDLDILYAEGVTSSNGLACVDFSFPRSASDDSVDTADQHDSLLRW 747 (750)
Q Consensus 692 IdRIaspDYvPTDqDILRARvkTtsnGI~E~eFs~~~~s~~~~~d~~~~~~~~~~y 747 (750)
++||++|+|+||++||||+|.+|+ ||.++.|.++. -....+|+++|...+.+|
T Consensus 126 ~~ri~~~~y~Pt~~Dil~~r~~T~--Gi~~~~f~~~~-~~~~~~DvgGq~~~R~kW 178 (317)
T cd00066 126 LDRISDPDYIPTEQDILRARVKTT--GIVETKFTIKN-LKFRMFDVGGQRSERKKW 178 (317)
T ss_pred HHHHhCCCCCCChhHheeeecccC--CeeEEEEEecc-eEEEEECCCCCcccchhH
Confidence 999999999999999999999998 99999999974 335678999987655543
No 6
>PF00503 G-alpha: G-protein alpha subunit; InterPro: IPR001019 Guanine nucleotide binding proteins (G proteins) are membrane-associated, heterotrimeric proteins composed of three subunits: alpha (IPR001019 from INTERPRO), beta (IPR001632 from INTERPRO) and gamma (IPR001770 from INTERPRO) []. G proteins and their receptors (GPCRs) form one of the most prevalent signalling systems in mammalian cells, regulating systems as diverse as sensory perception, cell growth and hormonal regulation []. At the cell surface, the binding of ligands such as hormones and neurotransmitters to a GPCR activates the receptor by causing a conformational change, which in turn activates the bound G protein on the intracellular-side of the membrane. The activated receptor promotes the exchange of bound GDP for GTP on the G protein alpha subunit. GTP binding changes the conformation of switch regions within the alpha subunit, which allows the bound trimeric G protein (inactive) to be released from the receptor, and to dissociate into active alpha subunit (GTP-bound) and beta/gamma dimer. The alpha subunit and the beta/gamma dimer go on to activate distinct downstream effectors, such as adenylyl cyclase, phosphodiesterases, phospholipase C, and ion channels. These effectors in turn regulate the intracellular concentrations of secondary messengers, such as cAMP, diacylglycerol, sodium or calcium cations, which ultimately lead to a physiological response, usually via the downstream regulation of gene transcription. The cycle is completed by the hydrolysis of alpha subunit-bound GTP to GDP, resulting in the re-association of the alpha and beta/gamma subunits and their binding to the receptor, which terminates the signal []. The length of the G protein signal is controlled by the duration of the GTP-bound alpha subunit, which can be regulated by RGS (regulator of G protein signalling) proteins (IPR000342 from INTERPRO) or by covalent modifications []. There are several isoforms of each subunit, many of which have splice variants, which together can make up hundreds of combinations of G proteins. The specific combination of subunits in heterotrimeric G proteins affects not only which receptor it can bind to, but also which downstream target is affected, providing the means to target specific physiological processes in response to specific external stimuli [, ]. G proteins carry lipid modifications on one or more of their subunits to target them to the plasma membrane and to contribute to protein interactions. This family consists of the G protein alpha subunit, which acts as a weak GTPase. G protein classes are defined based on the sequence and function of their alpha subunits, which in mammals fall into four main categories: G(S)alpha, G(Q)alpha, G(I)alpha and G(12)alpha; there are also fungal and plant classes of alpha subunits. The alpha subunit consists of two domains: a GTP-binding domain and a helical insertion domain (IPR011025 from INTERPRO). The GTP-binding domain is homologous to Ras-like small GTPases, and includes switch regions I and II, which change conformation during activation. The switch regions are loops of alpha-helices with conformations sensitive to guanine nucleotides. The helical insertion domain is inserted into the GTP-binding domain before switch region I and is unique to heterotrimeric G proteins. This helical insertion domain functions to sequester the guanine nucleotide at the interface with the GTP-binding domain and must be displaced to enable nucleotide dissociation.; GO: 0004871 signal transducer activity, 0019001 guanyl nucleotide binding, 0007186 G-protein coupled receptor protein signaling pathway; PDB: 3QI2_B 3QE0_A 2IK8_A 2OM2_A 2GTP_B 2XNS_B 3ONW_B 1KJY_A 2EBC_A 1Y3A_B ....
Probab=100.00 E-value=2.9e-38 Score=338.80 Aligned_cols=208 Identities=30% Similarity=0.456 Sum_probs=155.7
Q ss_pred cccccccccch-hHHHhcceeeEEEeecCCCCchhHHhHhhhhhcCCCCCHHHHhhhhHHHHHHHHHHHHHHHhhhcchh
Q 004481 513 QGSGLMSRSVP-DYIERRTLQKLLLVGCSGSGTSTIFKQAKILYKAVPFSDDEHENIKLKIQSNAYGYLGILLEGRERFE 591 (750)
Q Consensus 513 riSd~IDrsLq-dk~~~kr~iKLLLLGaGESGKSTILKQMKILh~~~GFSeeER~~~K~IIqsNIi~smkiLLeamE~fe 591 (750)
..++.|+++++ ++++.++.+||||||+||||||||+||||+||. +||+++|+..|+.+|+.|++++|+.|++++..++
T Consensus 39 ~~~~~~~~~l~~~~~~~~~~~kiLLLG~geSGKSTi~KQ~ril~~-~~~~~~E~~~~~~~I~~Nii~~~~~i~~~~~~~~ 117 (389)
T PF00503_consen 39 KRSDDIDRQLEKDKKRSKREIKILLLGSGESGKSTILKQMRILYG-PGFSEEERESYRPIIYSNIIQSMKQILEALEELG 117 (389)
T ss_dssp HHHHHHHHHHHHHHHHHHEEEEEEEEESTTSSHHHHHHHHHHHHS-T---HHHHHHTHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HhhHHHHHHHHHHHHhhhccceEEEECCCCcchhhHHHHHHHHhC-CCCchhhhhcceeeEecCchhhHHHHHHHHHHcC
Confidence 34677777777 677888999999999999999999999999999 9999999999999999999999999999999887
Q ss_pred hhHHHhhhhcCCCCCCCCCCCCCCcCCcceeccchhhHHhHHHHHhhhhcCCccccCC------ccchhHHHHHHHHhcc
Q 004481 592 EEILGEKRKKQSSDETNPVGSSDSTDGKTIYTIGPRLKAFSDWLLKTMVSGNLEAIFP------AATREYSPLVEELWKD 665 (750)
Q Consensus 592 ie~l~e~r~l~spdes~~~g~~~~~ndr~IySi~~~lkafsd~lLe~~~~gdld~~fp------~lt~E~A~aI~eLWkD 665 (750)
++..... . . ..++.+....+.+........ ...++ .++.++++.|..||+|
T Consensus 118 ~~~~~~~--------------~-~-------~~~~~~~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~i~~LW~D 174 (389)
T PF00503_consen 118 IPFSFSE--------------S-S-------QLNEENQEIAEKLKEILDPLD-SSEFSLASDDNKFPEELAEDIRSLWKD 174 (389)
T ss_dssp CH-SSS---------------T-T---------STTHHHHHHHHHHHHCTTS-TTCTC-----HCHHHHHHHHHHHHHHS
T ss_pred CCccccc--------------c-c-------cCCHHHHHHHHHHHhhhcccc-ccccccccccccCCHHHHHHHHHHHCC
Confidence 7642100 0 0 000112222333333322111 11111 2567999999999999
Q ss_pred HHHHHHHhhcchhhhhhhhHhhhhhhcccccCCCCCCCccceeeeecccCCCCeEEEEEEcCCCCCCCccCCCCCCCccc
Q 004481 666 AAIQATYSRRSELEMLSSVASYFLERVVDISRTDYEPSDLDILYAEGVTSSNGLACVDFSFPRSASDDSVDTADQHDSLL 745 (750)
Q Consensus 666 pgIQ~~y~RRnEFqlLpDSA~YFLDnIdRIaspDYvPTDqDILRARvkTtsnGI~E~eFs~~~~s~~~~~d~~~~~~~~~ 745 (750)
++||++|.++++|+ |+|++.|||++++||++++|+||++||||+|.+|+ ||.|+.|.++.......+|+++|...+.
T Consensus 175 ~~vq~~~~~~~~~~-l~d~~~YFl~~l~RI~~~~Y~PT~~DIl~~r~~T~--Gi~e~~f~~~~~~~~~~~DvGGqr~eRk 251 (389)
T PF00503_consen 175 PGVQECYERRNEFQ-LPDNAKYFLDNLDRIAQPDYIPTDEDILRCRVKTT--GITEIDFNFSGSRKFRLIDVGGQRSERK 251 (389)
T ss_dssp HHHHHHHGGGGGST---TTHHHHHTTHHHHHSTTB---HHHHHHS----S--SEEEEEEEE-TTEEEEEEEETSSGGGGG
T ss_pred hhHHHHHHhhhccc-ccccHHHHhhhhhhhcCCCccCCCCCeeeecCCCC--CeeEEEEEeecccccceecCCCCchhhh
Confidence 99999999999999 69999999999999999999999999999999998 9999999998667788999999988777
Q ss_pred cc
Q 004481 746 RW 747 (750)
Q Consensus 746 ~y 747 (750)
||
T Consensus 252 KW 253 (389)
T PF00503_consen 252 KW 253 (389)
T ss_dssp GG
T ss_pred hH
Confidence 76
No 7
>KOG0074 consensus GTP-binding ADP-ribosylation factor-like protein ARL3 [General function prediction only]
Probab=95.90 E-value=0.0039 Score=61.61 Aligned_cols=34 Identities=29% Similarity=0.458 Sum_probs=28.6
Q ss_pred HhcceeeEEEeecCCCCchhHHhHhh------hhhcCCCCC
Q 004481 527 ERRTLQKLLLVGCSGSGTSTIFKQAK------ILYKAVPFS 561 (750)
Q Consensus 527 ~~kr~iKLLLLGaGESGKSTILKQMK------ILh~~~GFS 561 (750)
+.++++||||||-+.+||+||+||++ ++-. +||+
T Consensus 13 ~t~rEirilllGldnAGKTT~LKqL~sED~~hltpT-~GFn 52 (185)
T KOG0074|consen 13 RTRREIRILLLGLDNAGKTTFLKQLKSEDPRHLTPT-NGFN 52 (185)
T ss_pred CCcceEEEEEEecCCCcchhHHHHHccCChhhcccc-CCcc
Confidence 45789999999999999999999997 3344 7775
No 8
>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....
Probab=94.91 E-value=0.018 Score=56.05 Aligned_cols=25 Identities=32% Similarity=0.662 Sum_probs=23.3
Q ss_pred hcceeeEEEeecCCCCchhHHhHhh
Q 004481 528 RRTLQKLLLVGCSGSGTSTIFKQAK 552 (750)
Q Consensus 528 ~kr~iKLLLLGaGESGKSTILKQMK 552 (750)
.++.+|||+||..+|||||++++++
T Consensus 11 ~~~~~~ililGl~~sGKTtll~~l~ 35 (175)
T PF00025_consen 11 KKKEIKILILGLDGSGKTTLLNRLK 35 (175)
T ss_dssp TTSEEEEEEEESTTSSHHHHHHHHH
T ss_pred cCcEEEEEEECCCccchHHHHHHhh
Confidence 4789999999999999999999986
No 9
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=94.64 E-value=0.02 Score=53.80 Aligned_cols=26 Identities=27% Similarity=0.512 Sum_probs=22.7
Q ss_pred HhcceeeEEEeecCCCCchhHHhHhh
Q 004481 527 ERRTLQKLLLVGCSGSGTSTIFKQAK 552 (750)
Q Consensus 527 ~~kr~iKLLLLGaGESGKSTILKQMK 552 (750)
+..+.+|++++|..++||||+++++.
T Consensus 10 ~~~~~~~v~i~G~~g~GKStLl~~l~ 35 (173)
T cd04155 10 KSSEEPRILILGLDNAGKTTILKQLA 35 (173)
T ss_pred ccCCccEEEEEccCCCCHHHHHHHHh
Confidence 44568999999999999999999875
No 10
>cd01892 Miro2 Miro2 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=94.31 E-value=0.026 Score=54.08 Aligned_cols=25 Identities=24% Similarity=0.485 Sum_probs=22.7
Q ss_pred hcceeeEEEeecCCCCchhHHhHhh
Q 004481 528 RRTLQKLLLVGCSGSGTSTIFKQAK 552 (750)
Q Consensus 528 ~kr~iKLLLLGaGESGKSTILKQMK 552 (750)
+++.+|++|||.+++||||+++++.
T Consensus 1 ~~~~~kv~~vG~~~vGKTsli~~~~ 25 (169)
T cd01892 1 QRNVFLCFVLGAKGSGKSALLRAFL 25 (169)
T ss_pred CCeEEEEEEECCCCCcHHHHHHHHh
Confidence 4789999999999999999999863
No 11
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=94.16 E-value=0.03 Score=49.74 Aligned_cols=20 Identities=25% Similarity=0.605 Sum_probs=18.5
Q ss_pred eEEEeecCCCCchhHHhHhh
Q 004481 533 KLLLVGCSGSGTSTIFKQAK 552 (750)
Q Consensus 533 KLLLLGaGESGKSTILKQMK 552 (750)
||++||..+|||||+++++.
T Consensus 1 kI~V~G~~g~GKTsLi~~l~ 20 (119)
T PF08477_consen 1 KIVVLGDSGVGKTSLIRRLC 20 (119)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred CEEEECcCCCCHHHHHHHHh
Confidence 79999999999999999864
No 12
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=94.02 E-value=0.036 Score=49.78 Aligned_cols=23 Identities=30% Similarity=0.417 Sum_probs=19.5
Q ss_pred eEEEeecCCCCchhHHhHhhhhh
Q 004481 533 KLLLVGCSGSGTSTIFKQAKILY 555 (750)
Q Consensus 533 KLLLLGaGESGKSTILKQMKILh 555 (750)
++++.|+.+|||||+.|++.=.+
T Consensus 1 vI~I~G~~gsGKST~a~~La~~~ 23 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAERL 23 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHH
Confidence 47899999999999999876443
No 13
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=93.71 E-value=0.04 Score=53.02 Aligned_cols=24 Identities=25% Similarity=0.492 Sum_probs=21.4
Q ss_pred cceeeEEEeecCCCCchhHHhHhh
Q 004481 529 RTLQKLLLVGCSGSGTSTIFKQAK 552 (750)
Q Consensus 529 kr~iKLLLLGaGESGKSTILKQMK 552 (750)
.+..||+|+|.++|||||+++++.
T Consensus 17 ~~~~ki~ilG~~~~GKStLi~~l~ 40 (190)
T cd00879 17 NKEAKILFLGLDNAGKTTLLHMLK 40 (190)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHh
Confidence 457899999999999999999864
No 14
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=93.61 E-value=0.041 Score=51.18 Aligned_cols=21 Identities=29% Similarity=0.629 Sum_probs=19.3
Q ss_pred eeEEEeecCCCCchhHHhHhh
Q 004481 532 QKLLLVGCSGSGTSTIFKQAK 552 (750)
Q Consensus 532 iKLLLLGaGESGKSTILKQMK 552 (750)
+|++++|.+++|||||+.++.
T Consensus 1 ~ki~v~G~~~vGKTsli~~l~ 21 (161)
T cd04113 1 FKFIIIGSSGTGKSCLLHRFV 21 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHH
Confidence 589999999999999999964
No 15
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=93.54 E-value=0.045 Score=48.54 Aligned_cols=22 Identities=27% Similarity=0.421 Sum_probs=19.6
Q ss_pred eeeEEEeecCCCCchhHHhHhh
Q 004481 531 LQKLLLVGCSGSGTSTIFKQAK 552 (750)
Q Consensus 531 ~iKLLLLGaGESGKSTILKQMK 552 (750)
.+|++|+|..+|||||++.++.
T Consensus 1 ~~ki~~~G~~~~GKstl~~~l~ 22 (161)
T TIGR00231 1 EIKIVIVGDPNVGKSTLLNRLL 22 (161)
T ss_pred CeEEEEECCCCCCHHHHHHHHh
Confidence 3799999999999999998864
No 16
>cd04154 Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.
Probab=93.52 E-value=0.045 Score=52.15 Aligned_cols=25 Identities=24% Similarity=0.513 Sum_probs=21.7
Q ss_pred hcceeeEEEeecCCCCchhHHhHhh
Q 004481 528 RRTLQKLLLVGCSGSGTSTIFKQAK 552 (750)
Q Consensus 528 ~kr~iKLLLLGaGESGKSTILKQMK 552 (750)
..+.+||+++|.+++||||+++++.
T Consensus 11 ~~~~~kv~ivG~~~~GKTsL~~~l~ 35 (173)
T cd04154 11 KEREMRILILGLDNAGKTTILKKLL 35 (173)
T ss_pred CCCccEEEEECCCCCCHHHHHHHHc
Confidence 3456899999999999999999863
No 17
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=93.40 E-value=0.047 Score=49.11 Aligned_cols=21 Identities=29% Similarity=0.531 Sum_probs=19.3
Q ss_pred eeEEEeecCCCCchhHHhHhh
Q 004481 532 QKLLLVGCSGSGTSTIFKQAK 552 (750)
Q Consensus 532 iKLLLLGaGESGKSTILKQMK 552 (750)
+||+++|..+|||||++.++.
T Consensus 1 ~~i~~~G~~~~GKStl~~~l~ 21 (159)
T cd00154 1 FKIVLIGDSGVGKTSLLLRFV 21 (159)
T ss_pred CeEEEECCCCCCHHHHHHHHH
Confidence 589999999999999999964
No 18
>cd00157 Rho Rho (Ras homology) family. Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein
Probab=93.40 E-value=0.047 Score=50.88 Aligned_cols=21 Identities=19% Similarity=0.365 Sum_probs=19.2
Q ss_pred eeEEEeecCCCCchhHHhHhh
Q 004481 532 QKLLLVGCSGSGTSTIFKQAK 552 (750)
Q Consensus 532 iKLLLLGaGESGKSTILKQMK 552 (750)
+|++++|..++||||+++|+.
T Consensus 1 iki~i~G~~~~GKSsli~~l~ 21 (171)
T cd00157 1 IKIVVVGDGAVGKTCLLISYT 21 (171)
T ss_pred CEEEEECCCCCCHHHHHHHHH
Confidence 699999999999999999863
No 19
>PRK07261 topology modulation protein; Provisional
Probab=93.40 E-value=0.046 Score=53.64 Aligned_cols=20 Identities=40% Similarity=0.713 Sum_probs=18.6
Q ss_pred eEEEeecCCCCchhHHhHhh
Q 004481 533 KLLLVGCSGSGTSTIFKQAK 552 (750)
Q Consensus 533 KLLLLGaGESGKSTILKQMK 552 (750)
|++++|++||||||+.+++-
T Consensus 2 ri~i~G~~GsGKSTla~~l~ 21 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLS 21 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHH
Confidence 79999999999999999875
No 20
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=93.36 E-value=0.049 Score=49.89 Aligned_cols=22 Identities=36% Similarity=0.459 Sum_probs=19.8
Q ss_pred eeeEEEeecCCCCchhHHhHhh
Q 004481 531 LQKLLLVGCSGSGTSTIFKQAK 552 (750)
Q Consensus 531 ~iKLLLLGaGESGKSTILKQMK 552 (750)
++|+++||..++||||+++++.
T Consensus 1 ~~ki~iiG~~~vGKTsl~~~~~ 22 (162)
T cd04138 1 EYKLVVVGAGGVGKSALTIQLI 22 (162)
T ss_pred CeEEEEECCCCCCHHHHHHHHH
Confidence 3699999999999999999874
No 21
>PRK08118 topology modulation protein; Reviewed
Probab=93.21 E-value=0.084 Score=51.77 Aligned_cols=22 Identities=41% Similarity=0.691 Sum_probs=19.5
Q ss_pred eeEEEeecCCCCchhHHhHhhh
Q 004481 532 QKLLLVGCSGSGTSTIFKQAKI 553 (750)
Q Consensus 532 iKLLLLGaGESGKSTILKQMKI 553 (750)
.||+++|++||||||+.|++--
T Consensus 2 ~rI~I~G~~GsGKSTlak~L~~ 23 (167)
T PRK08118 2 KKIILIGSGGSGKSTLARQLGE 23 (167)
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 3799999999999999998763
No 22
>PTZ00133 ADP-ribosylation factor; Provisional
Probab=93.14 E-value=0.055 Score=52.84 Aligned_cols=24 Identities=29% Similarity=0.549 Sum_probs=21.9
Q ss_pred cceeeEEEeecCCCCchhHHhHhh
Q 004481 529 RTLQKLLLVGCSGSGTSTIFKQAK 552 (750)
Q Consensus 529 kr~iKLLLLGaGESGKSTILKQMK 552 (750)
++.+||+|+|.+++||||+++++.
T Consensus 15 ~~~~kv~lvG~~~vGKTsli~~~~ 38 (182)
T PTZ00133 15 KKEVRILMVGLDAAGKTTILYKLK 38 (182)
T ss_pred CCccEEEEEcCCCCCHHHHHHHHh
Confidence 557999999999999999999985
No 23
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=93.10 E-value=0.054 Score=54.21 Aligned_cols=20 Identities=35% Similarity=0.668 Sum_probs=17.5
Q ss_pred eeEEEeecCCCCchhHHhHh
Q 004481 532 QKLLLVGCSGSGTSTIFKQA 551 (750)
Q Consensus 532 iKLLLLGaGESGKSTILKQM 551 (750)
.||++||++||||||+.|++
T Consensus 1 ~riiilG~pGaGK~T~A~~L 20 (178)
T COG0563 1 MRILILGPPGAGKSTLAKKL 20 (178)
T ss_pred CeEEEECCCCCCHHHHHHHH
Confidence 37999999999999987764
No 24
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=92.88 E-value=0.062 Score=49.58 Aligned_cols=21 Identities=33% Similarity=0.621 Sum_probs=19.1
Q ss_pred eeEEEeecCCCCchhHHhHhh
Q 004481 532 QKLLLVGCSGSGTSTIFKQAK 552 (750)
Q Consensus 532 iKLLLLGaGESGKSTILKQMK 552 (750)
+||+++|..+|||||+++++-
T Consensus 1 ~kv~v~G~~~~GKTtli~~l~ 21 (164)
T smart00175 1 FKIILIGDSGVGKSSLLSRFT 21 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHh
Confidence 599999999999999999863
No 25
>cd04150 Arf1_5_like Arf1-Arf5-like subfamily. This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents
Probab=92.79 E-value=0.065 Score=50.81 Aligned_cols=21 Identities=33% Similarity=0.635 Sum_probs=19.2
Q ss_pred eeEEEeecCCCCchhHHhHhh
Q 004481 532 QKLLLVGCSGSGTSTIFKQAK 552 (750)
Q Consensus 532 iKLLLLGaGESGKSTILKQMK 552 (750)
+|++|+|.++|||||+++++.
T Consensus 1 ~kv~~~G~~~~GKTsli~~l~ 21 (159)
T cd04150 1 MRILMVGLDAAGKTTILYKLK 21 (159)
T ss_pred CEEEEECCCCCCHHHHHHHHh
Confidence 589999999999999999863
No 26
>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t
Probab=92.70 E-value=0.073 Score=49.89 Aligned_cols=21 Identities=48% Similarity=0.654 Sum_probs=19.3
Q ss_pred eeeEEEeecCCCCchhHHhHh
Q 004481 531 LQKLLLVGCSGSGTSTIFKQA 551 (750)
Q Consensus 531 ~iKLLLLGaGESGKSTILKQM 551 (750)
..|+++||.+++||||++.++
T Consensus 2 ~~ki~i~G~~~vGKSsli~~~ 22 (166)
T cd01869 2 LFKLLLIGDSGVGKSCLLLRF 22 (166)
T ss_pred eEEEEEECCCCCCHHHHHHHH
Confidence 479999999999999999886
No 27
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=92.41 E-value=0.078 Score=48.80 Aligned_cols=21 Identities=33% Similarity=0.499 Sum_probs=19.2
Q ss_pred eeEEEeecCCCCchhHHhHhh
Q 004481 532 QKLLLVGCSGSGTSTIFKQAK 552 (750)
Q Consensus 532 iKLLLLGaGESGKSTILKQMK 552 (750)
.||.++|.+++||||+++++.
T Consensus 1 ~ki~~~G~~~~GKTsl~~~l~ 21 (164)
T cd04139 1 YKVIVVGAGGVGKSALTLQFM 21 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHH
Confidence 489999999999999999875
No 28
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=92.41 E-value=0.078 Score=49.33 Aligned_cols=21 Identities=33% Similarity=0.482 Sum_probs=19.0
Q ss_pred eeEEEeecCCCCchhHHhHhh
Q 004481 532 QKLLLVGCSGSGTSTIFKQAK 552 (750)
Q Consensus 532 iKLLLLGaGESGKSTILKQMK 552 (750)
+||+++|.+++||||+++++.
T Consensus 1 ~ki~v~G~~~~GKTsli~~~~ 21 (164)
T smart00173 1 YKLVVLGSGGVGKSALTIQFV 21 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHH
Confidence 489999999999999999863
No 29
>KOG0073 consensus GTP-binding ADP-ribosylation factor-like protein ARL2 [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]
Probab=92.36 E-value=0.097 Score=52.99 Aligned_cols=24 Identities=29% Similarity=0.545 Sum_probs=21.2
Q ss_pred hcceeeEEEeecCCCCchhHHhHh
Q 004481 528 RRTLQKLLLVGCSGSGTSTIFKQA 551 (750)
Q Consensus 528 ~kr~iKLLLLGaGESGKSTILKQM 551 (750)
..+++++|+||..+||||||+|-+
T Consensus 13 kerE~riLiLGLdNsGKTti~~kl 36 (185)
T KOG0073|consen 13 KEREVRILILGLDNSGKTTIVKKL 36 (185)
T ss_pred hhheeEEEEEecCCCCchhHHHHh
Confidence 345999999999999999999954
No 30
>cd01860 Rab5_related Rab5-related subfamily. This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo
Probab=92.33 E-value=0.083 Score=48.97 Aligned_cols=22 Identities=32% Similarity=0.369 Sum_probs=19.7
Q ss_pred eeeEEEeecCCCCchhHHhHhh
Q 004481 531 LQKLLLVGCSGSGTSTIFKQAK 552 (750)
Q Consensus 531 ~iKLLLLGaGESGKSTILKQMK 552 (750)
++|++++|.+++||||+++++.
T Consensus 1 ~~ki~v~G~~~~GKSsli~~l~ 22 (163)
T cd01860 1 QFKLVLLGDSSVGKSSLVLRFV 22 (163)
T ss_pred CeEEEEECCCCCCHHHHHHHHH
Confidence 4799999999999999998763
No 31
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=92.29 E-value=0.09 Score=47.18 Aligned_cols=20 Identities=20% Similarity=0.469 Sum_probs=18.3
Q ss_pred eEEEeecCCCCchhHHhHhh
Q 004481 533 KLLLVGCSGSGTSTIFKQAK 552 (750)
Q Consensus 533 KLLLLGaGESGKSTILKQMK 552 (750)
|++++|..++||||+++.+-
T Consensus 1 ~V~iiG~~~~GKSTlin~l~ 20 (116)
T PF01926_consen 1 RVAIIGRPNVGKSTLINALT 20 (116)
T ss_dssp EEEEEESTTSSHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHh
Confidence 68999999999999999864
No 32
>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....
Probab=92.29 E-value=0.088 Score=48.89 Aligned_cols=19 Identities=32% Similarity=0.681 Sum_probs=18.0
Q ss_pred eEEEeecCCCCchhHHhHh
Q 004481 533 KLLLVGCSGSGTSTIFKQA 551 (750)
Q Consensus 533 KLLLLGaGESGKSTILKQM 551 (750)
||+++|.+++||||+++++
T Consensus 1 Ki~vvG~~~vGKtsl~~~~ 19 (162)
T PF00071_consen 1 KIVVVGDSGVGKTSLINRL 19 (162)
T ss_dssp EEEEEESTTSSHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHH
Confidence 8999999999999999975
No 33
>cd04123 Rab21 Rab21 subfamily. The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site
Probab=92.22 E-value=0.085 Score=48.30 Aligned_cols=21 Identities=19% Similarity=0.321 Sum_probs=19.1
Q ss_pred eeEEEeecCCCCchhHHhHhh
Q 004481 532 QKLLLVGCSGSGTSTIFKQAK 552 (750)
Q Consensus 532 iKLLLLGaGESGKSTILKQMK 552 (750)
+||+++|..++||||+++++.
T Consensus 1 ~ki~i~G~~~~GKStli~~l~ 21 (162)
T cd04123 1 FKVVLLGEGRVGKTSLVLRYV 21 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHH
Confidence 589999999999999998764
No 34
>cd04114 Rab30 Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=92.20 E-value=0.088 Score=49.21 Aligned_cols=24 Identities=25% Similarity=0.527 Sum_probs=21.4
Q ss_pred cceeeEEEeecCCCCchhHHhHhh
Q 004481 529 RTLQKLLLVGCSGSGTSTIFKQAK 552 (750)
Q Consensus 529 kr~iKLLLLGaGESGKSTILKQMK 552 (750)
+...|++++|..++||||+++++.
T Consensus 5 ~~~~~v~v~G~~~~GKSsli~~l~ 28 (169)
T cd04114 5 DFLFKIVLIGNAGVGKTCLVRRFT 28 (169)
T ss_pred CceeEEEEECCCCCCHHHHHHHHH
Confidence 456899999999999999999963
No 35
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=92.20 E-value=0.087 Score=48.39 Aligned_cols=19 Identities=42% Similarity=0.655 Sum_probs=17.4
Q ss_pred EEEeecCCCCchhHHhHhh
Q 004481 534 LLLVGCSGSGTSTIFKQAK 552 (750)
Q Consensus 534 LLLLGaGESGKSTILKQMK 552 (750)
++|.|..+|||||+.|++.
T Consensus 2 ii~~G~pgsGKSt~a~~l~ 20 (143)
T PF13671_consen 2 IILCGPPGSGKSTLAKRLA 20 (143)
T ss_dssp EEEEESTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 6899999999999999965
No 36
>PRK06217 hypothetical protein; Validated
Probab=92.16 E-value=0.084 Score=51.80 Aligned_cols=23 Identities=30% Similarity=0.394 Sum_probs=19.8
Q ss_pred eeEEEeecCCCCchhHHhHhhhh
Q 004481 532 QKLLLVGCSGSGTSTIFKQAKIL 554 (750)
Q Consensus 532 iKLLLLGaGESGKSTILKQMKIL 554 (750)
.||+|.|.+||||||+.+++.-.
T Consensus 2 ~~I~i~G~~GsGKSTla~~L~~~ 24 (183)
T PRK06217 2 MRIHITGASGSGTTTLGAALAER 24 (183)
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 47999999999999999986533
No 37
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=92.13 E-value=0.086 Score=49.19 Aligned_cols=23 Identities=30% Similarity=0.663 Sum_probs=20.0
Q ss_pred eEEEeecCCCCchhHHhHhhhhh
Q 004481 533 KLLLVGCSGSGTSTIFKQAKILY 555 (750)
Q Consensus 533 KLLLLGaGESGKSTILKQMKILh 555 (750)
+|+++|..++||||+++|+.-.+
T Consensus 1 ~i~~vG~~~~GKstLi~~l~~~~ 23 (167)
T cd04160 1 SVLILGLDNAGKTTFLEQLKTLF 23 (167)
T ss_pred CEEEEecCCCCHHHHHHHHhhhc
Confidence 58999999999999999986544
No 38
>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine
Probab=92.12 E-value=0.093 Score=49.84 Aligned_cols=23 Identities=17% Similarity=0.310 Sum_probs=20.7
Q ss_pred ceeeEEEeecCCCCchhHHhHhh
Q 004481 530 TLQKLLLVGCSGSGTSTIFKQAK 552 (750)
Q Consensus 530 r~iKLLLLGaGESGKSTILKQMK 552 (750)
+.+||+++|.+++||||++.++.
T Consensus 1 r~~ki~vvG~~~vGKTsli~~~~ 23 (170)
T cd04115 1 RIFKIIVIGDSNVGKTCLTYRFC 23 (170)
T ss_pred CceEEEEECCCCCCHHHHHHHHH
Confidence 46899999999999999999974
No 39
>cd04135 Tc10 TC10 subfamily. TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti
Probab=92.03 E-value=0.096 Score=49.34 Aligned_cols=21 Identities=19% Similarity=0.305 Sum_probs=18.7
Q ss_pred eeEEEeecCCCCchhHHhHhh
Q 004481 532 QKLLLVGCSGSGTSTIFKQAK 552 (750)
Q Consensus 532 iKLLLLGaGESGKSTILKQMK 552 (750)
+|+++||.+++||||++.++.
T Consensus 1 ~ki~i~G~~~~GKTsl~~~~~ 21 (174)
T cd04135 1 LKCVVVGDGAVGKTCLLMSYA 21 (174)
T ss_pred CEEEEECCCCCCHHHHHHHHH
Confidence 589999999999999997653
No 40
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]
Probab=91.99 E-value=0.097 Score=51.39 Aligned_cols=22 Identities=23% Similarity=0.460 Sum_probs=20.2
Q ss_pred eeeEEEeecCCCCchhHHhHhh
Q 004481 531 LQKLLLVGCSGSGTSTIFKQAK 552 (750)
Q Consensus 531 ~iKLLLLGaGESGKSTILKQMK 552 (750)
.+||+++|.+++||||++.++.
T Consensus 5 ~~kivv~G~~g~GKTtl~~~l~ 26 (219)
T COG1100 5 EFKIVVLGDGGVGKTTLLNRLV 26 (219)
T ss_pred eEEEEEEcCCCccHHHHHHHHh
Confidence 3899999999999999999875
No 41
>PLN00223 ADP-ribosylation factor; Provisional
Probab=91.98 E-value=0.096 Score=51.21 Aligned_cols=24 Identities=29% Similarity=0.556 Sum_probs=21.5
Q ss_pred cceeeEEEeecCCCCchhHHhHhh
Q 004481 529 RTLQKLLLVGCSGSGTSTIFKQAK 552 (750)
Q Consensus 529 kr~iKLLLLGaGESGKSTILKQMK 552 (750)
++.+||+++|..+|||||+++++.
T Consensus 15 ~~~~ki~ivG~~~~GKTsl~~~l~ 38 (181)
T PLN00223 15 KKEMRILMVGLDAAGKTTILYKLK 38 (181)
T ss_pred CCccEEEEECCCCCCHHHHHHHHc
Confidence 556899999999999999999874
No 42
>cd04106 Rab23_lke Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G
Probab=91.89 E-value=0.1 Score=48.36 Aligned_cols=21 Identities=24% Similarity=0.455 Sum_probs=19.1
Q ss_pred eeEEEeecCCCCchhHHhHhh
Q 004481 532 QKLLLVGCSGSGTSTIFKQAK 552 (750)
Q Consensus 532 iKLLLLGaGESGKSTILKQMK 552 (750)
+||+++|..++||||++.++.
T Consensus 1 ~kv~~vG~~~~GKTsl~~~~~ 21 (162)
T cd04106 1 IKVIVVGNGNVGKSSMIQRFV 21 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHh
Confidence 589999999999999999864
No 43
>cd01861 Rab6 Rab6 subfamily. Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate
Probab=91.81 E-value=0.1 Score=48.30 Aligned_cols=21 Identities=24% Similarity=0.471 Sum_probs=19.1
Q ss_pred eeEEEeecCCCCchhHHhHhh
Q 004481 532 QKLLLVGCSGSGTSTIFKQAK 552 (750)
Q Consensus 532 iKLLLLGaGESGKSTILKQMK 552 (750)
.||+|+|..+|||||+++++.
T Consensus 1 ~ki~liG~~~~GKSsli~~l~ 21 (161)
T cd01861 1 HKLVFLGDQSVGKTSIITRFM 21 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHH
Confidence 489999999999999999874
No 44
>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases. Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.
Probab=91.81 E-value=0.11 Score=50.74 Aligned_cols=24 Identities=25% Similarity=0.505 Sum_probs=21.6
Q ss_pred cceeeEEEeecCCCCchhHHhHhh
Q 004481 529 RTLQKLLLVGCSGSGTSTIFKQAK 552 (750)
Q Consensus 529 kr~iKLLLLGaGESGKSTILKQMK 552 (750)
.+.+||+++|..++||||+++++.
T Consensus 15 ~~~~~i~ivG~~~~GKTsli~~l~ 38 (184)
T smart00178 15 NKHAKILFLGLDNAGKTTLLHMLK 38 (184)
T ss_pred cccCEEEEECCCCCCHHHHHHHHh
Confidence 566999999999999999999874
No 45
>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor. Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).
Probab=91.75 E-value=0.11 Score=50.22 Aligned_cols=24 Identities=29% Similarity=0.523 Sum_probs=21.3
Q ss_pred cceeeEEEeecCCCCchhHHhHhh
Q 004481 529 RTLQKLLLVGCSGSGTSTIFKQAK 552 (750)
Q Consensus 529 kr~iKLLLLGaGESGKSTILKQMK 552 (750)
+..+||+|+|.+++||||++.++.
T Consensus 11 ~~~~ki~l~G~~~~GKTsL~~~~~ 34 (175)
T smart00177 11 NKEMRILMVGLDAAGKTTILYKLK 34 (175)
T ss_pred CCccEEEEEcCCCCCHHHHHHHHh
Confidence 356999999999999999998873
No 46
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=91.69 E-value=0.12 Score=44.13 Aligned_cols=23 Identities=30% Similarity=0.508 Sum_probs=20.1
Q ss_pred EEEeecCCCCchhHHhHhhhhhc
Q 004481 534 LLLVGCSGSGTSTIFKQAKILYK 556 (750)
Q Consensus 534 LLLLGaGESGKSTILKQMKILh~ 556 (750)
.||.|..+||||||+--|+.+--
T Consensus 26 tli~G~nGsGKSTllDAi~~~L~ 48 (62)
T PF13555_consen 26 TLITGPNGSGKSTLLDAIQTVLY 48 (62)
T ss_pred EEEECCCCCCHHHHHHHHHHHHc
Confidence 79999999999999999886543
No 47
>cd01865 Rab3 Rab3 subfamily. The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot
Probab=91.62 E-value=0.11 Score=48.95 Aligned_cols=20 Identities=30% Similarity=0.494 Sum_probs=18.7
Q ss_pred eeEEEeecCCCCchhHHhHh
Q 004481 532 QKLLLVGCSGSGTSTIFKQA 551 (750)
Q Consensus 532 iKLLLLGaGESGKSTILKQM 551 (750)
+|+++||..++|||||+.++
T Consensus 2 ~ki~i~G~~~~GKSsli~~l 21 (165)
T cd01865 2 FKLLIIGNSSVGKTSFLFRY 21 (165)
T ss_pred eEEEEECCCCCCHHHHHHHH
Confidence 69999999999999999975
No 48
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=91.62 E-value=0.11 Score=49.03 Aligned_cols=21 Identities=29% Similarity=0.452 Sum_probs=19.1
Q ss_pred eeEEEeecCCCCchhHHhHhh
Q 004481 532 QKLLLVGCSGSGTSTIFKQAK 552 (750)
Q Consensus 532 iKLLLLGaGESGKSTILKQMK 552 (750)
+|++|+|..++||||++.++.
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~ 21 (161)
T cd04124 1 VKIILLGDSAVGKSKLVERFL 21 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHH
Confidence 589999999999999998864
No 49
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=91.55 E-value=0.11 Score=47.59 Aligned_cols=20 Identities=35% Similarity=0.524 Sum_probs=18.4
Q ss_pred eEEEeecCCCCchhHHhHhh
Q 004481 533 KLLLVGCSGSGTSTIFKQAK 552 (750)
Q Consensus 533 KLLLLGaGESGKSTILKQMK 552 (750)
||+++|..+|||||++.++.
T Consensus 1 ki~i~G~~~~GKTsli~~l~ 20 (160)
T cd00876 1 KVVVLGAGGVGKSAITIQFV 20 (160)
T ss_pred CEEEECCCCCCHHHHHHHHH
Confidence 79999999999999999864
No 50
>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.
Probab=91.51 E-value=0.12 Score=49.69 Aligned_cols=23 Identities=30% Similarity=0.430 Sum_probs=20.8
Q ss_pred ceeeEEEeecCCCCchhHHhHhh
Q 004481 530 TLQKLLLVGCSGSGTSTIFKQAK 552 (750)
Q Consensus 530 r~iKLLLLGaGESGKSTILKQMK 552 (750)
...|++++|..++||||+++++.
T Consensus 14 ~~~kv~~~G~~~~GKTsl~~~l~ 36 (174)
T cd04153 14 KEYKVIIVGLDNAGKTTILYQFL 36 (174)
T ss_pred CccEEEEECCCCCCHHHHHHHHc
Confidence 46899999999999999999874
No 51
>cd04136 Rap_like Rap-like subfamily. The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.
Probab=91.41 E-value=0.12 Score=47.69 Aligned_cols=21 Identities=29% Similarity=0.453 Sum_probs=19.1
Q ss_pred eeEEEeecCCCCchhHHhHhh
Q 004481 532 QKLLLVGCSGSGTSTIFKQAK 552 (750)
Q Consensus 532 iKLLLLGaGESGKSTILKQMK 552 (750)
+|++++|..++||||++.++.
T Consensus 2 ~ki~i~G~~~vGKTsl~~~~~ 22 (163)
T cd04136 2 YKVVVLGSGGVGKSALTVQFV 22 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHH
Confidence 699999999999999998764
No 52
>cd01864 Rab19 Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=91.38 E-value=0.13 Score=48.19 Aligned_cols=21 Identities=29% Similarity=0.539 Sum_probs=19.6
Q ss_pred eeeEEEeecCCCCchhHHhHh
Q 004481 531 LQKLLLVGCSGSGTSTIFKQA 551 (750)
Q Consensus 531 ~iKLLLLGaGESGKSTILKQM 551 (750)
..|++++|..++||||++.++
T Consensus 3 ~~kv~vvG~~~~GKTsli~~l 23 (165)
T cd01864 3 LFKIILIGDSNVGKTCVVQRF 23 (165)
T ss_pred eeEEEEECCCCCCHHHHHHHH
Confidence 589999999999999999985
No 53
>COG4639 Predicted kinase [General function prediction only]
Probab=91.33 E-value=0.32 Score=49.00 Aligned_cols=17 Identities=53% Similarity=0.759 Sum_probs=15.8
Q ss_pred EEEeecCCCCchhHHhH
Q 004481 534 LLLVGCSGSGTSTIFKQ 550 (750)
Q Consensus 534 LLLLGaGESGKSTILKQ 550 (750)
++|.|+.+|||||+.|+
T Consensus 5 vvL~G~~~sGKsT~ak~ 21 (168)
T COG4639 5 VVLRGASGSGKSTFAKE 21 (168)
T ss_pred EEEecCCCCchhHHHHH
Confidence 57889999999999998
No 54
>cd04116 Rab9 Rab9 subfamily. Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX
Probab=91.30 E-value=0.13 Score=48.32 Aligned_cols=23 Identities=30% Similarity=0.582 Sum_probs=20.7
Q ss_pred ceeeEEEeecCCCCchhHHhHhh
Q 004481 530 TLQKLLLVGCSGSGTSTIFKQAK 552 (750)
Q Consensus 530 r~iKLLLLGaGESGKSTILKQMK 552 (750)
..+|++++|..++||||+++++.
T Consensus 4 ~~~ki~vvG~~~~GKTsli~~~~ 26 (170)
T cd04116 4 SLLKVILLGDGGVGKSSLMNRYV 26 (170)
T ss_pred eEEEEEEECCCCCCHHHHHHHHH
Confidence 46899999999999999999874
No 55
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=91.30 E-value=0.13 Score=45.73 Aligned_cols=19 Identities=37% Similarity=0.538 Sum_probs=17.0
Q ss_pred EEEeecCCCCchhHHhHhh
Q 004481 534 LLLVGCSGSGTSTIFKQAK 552 (750)
Q Consensus 534 LLLLGaGESGKSTILKQMK 552 (750)
|+|-|+.+||||||.|.+.
T Consensus 1 I~i~G~~GsGKtTia~~L~ 19 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELA 19 (129)
T ss_dssp EEEEESTTSSHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHH
Confidence 6899999999999998765
No 56
>cd04117 Rab15 Rab15 subfamily. Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to
Probab=91.30 E-value=0.13 Score=48.76 Aligned_cols=21 Identities=33% Similarity=0.563 Sum_probs=18.8
Q ss_pred eeEEEeecCCCCchhHHhHhh
Q 004481 532 QKLLLVGCSGSGTSTIFKQAK 552 (750)
Q Consensus 532 iKLLLLGaGESGKSTILKQMK 552 (750)
+||+++|.+++||||++.++.
T Consensus 1 ~ki~vvG~~~~GKTsli~~~~ 21 (161)
T cd04117 1 FRLLLIGDSGVGKTCLLCRFT 21 (161)
T ss_pred CEEEEECcCCCCHHHHHHHHh
Confidence 489999999999999998764
No 57
>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign
Probab=91.26 E-value=0.13 Score=49.53 Aligned_cols=23 Identities=26% Similarity=0.408 Sum_probs=20.5
Q ss_pred ceeeEEEeecCCCCchhHHhHhh
Q 004481 530 TLQKLLLVGCSGSGTSTIFKQAK 552 (750)
Q Consensus 530 r~iKLLLLGaGESGKSTILKQMK 552 (750)
+.+|+++||..++|||||++|+.
T Consensus 1 ~~~ki~vvG~~~vGKTsL~~~~~ 23 (172)
T cd04141 1 REYKIVMLGAGGVGKSAVTMQFI 23 (172)
T ss_pred CceEEEEECCCCCcHHHHHHHHH
Confidence 35799999999999999999865
No 58
>cd04149 Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t
Probab=91.23 E-value=0.13 Score=49.48 Aligned_cols=24 Identities=25% Similarity=0.501 Sum_probs=21.2
Q ss_pred cceeeEEEeecCCCCchhHHhHhh
Q 004481 529 RTLQKLLLVGCSGSGTSTIFKQAK 552 (750)
Q Consensus 529 kr~iKLLLLGaGESGKSTILKQMK 552 (750)
.+.+||+++|..++||||+++++.
T Consensus 7 ~~~~kv~i~G~~~~GKTsli~~l~ 30 (168)
T cd04149 7 NKEMRILMLGLDAAGKTTILYKLK 30 (168)
T ss_pred CCccEEEEECcCCCCHHHHHHHHc
Confidence 356899999999999999999874
No 59
>cd04177 RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu
Probab=91.17 E-value=0.13 Score=48.64 Aligned_cols=22 Identities=27% Similarity=0.394 Sum_probs=19.8
Q ss_pred eeeEEEeecCCCCchhHHhHhh
Q 004481 531 LQKLLLVGCSGSGTSTIFKQAK 552 (750)
Q Consensus 531 ~iKLLLLGaGESGKSTILKQMK 552 (750)
++|++|+|.+++||||+++++.
T Consensus 1 ~~ki~liG~~~~GKTsli~~~~ 22 (168)
T cd04177 1 DYKIVVLGAGGVGKSALTVQFV 22 (168)
T ss_pred CeEEEEECCCCCCHHHHHHHHH
Confidence 4799999999999999999873
No 60
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=91.17 E-value=0.13 Score=47.29 Aligned_cols=21 Identities=38% Similarity=0.495 Sum_probs=19.2
Q ss_pred eeEEEeecCCCCchhHHhHhh
Q 004481 532 QKLLLVGCSGSGTSTIFKQAK 552 (750)
Q Consensus 532 iKLLLLGaGESGKSTILKQMK 552 (750)
+||+++|.+++||||++.++.
T Consensus 1 ~ki~~vG~~~vGKTsli~~l~ 21 (168)
T cd04119 1 IKVISMGNSGVGKSCIIKRYC 21 (168)
T ss_pred CEEEEECCCCCCHHHHHHHHH
Confidence 699999999999999999864
No 61
>cd01868 Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP
Probab=91.14 E-value=0.13 Score=47.92 Aligned_cols=21 Identities=38% Similarity=0.651 Sum_probs=19.7
Q ss_pred eeeEEEeecCCCCchhHHhHh
Q 004481 531 LQKLLLVGCSGSGTSTIFKQA 551 (750)
Q Consensus 531 ~iKLLLLGaGESGKSTILKQM 551 (750)
.+|++++|.+++||||+++++
T Consensus 3 ~~ki~vvG~~~~GKSsli~~l 23 (165)
T cd01868 3 LFKIVLIGDSGVGKSNLLSRF 23 (165)
T ss_pred ceEEEEECCCCCCHHHHHHHH
Confidence 479999999999999999997
No 62
>cd04127 Rab27A Rab27a subfamily. The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated
Probab=91.13 E-value=0.14 Score=48.59 Aligned_cols=22 Identities=36% Similarity=0.490 Sum_probs=20.2
Q ss_pred ceeeEEEeecCCCCchhHHhHh
Q 004481 530 TLQKLLLVGCSGSGTSTIFKQA 551 (750)
Q Consensus 530 r~iKLLLLGaGESGKSTILKQM 551 (750)
..+||+++|..++||||+++++
T Consensus 3 ~~~ki~ivG~~~vGKTsli~~~ 24 (180)
T cd04127 3 YLIKFLALGDSGVGKTSFLYQY 24 (180)
T ss_pred ceEEEEEECCCCCCHHHHHHHH
Confidence 4689999999999999999886
No 63
>cd01895 EngA2 EngA2 subfamily. This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=91.11 E-value=0.14 Score=47.08 Aligned_cols=21 Identities=14% Similarity=0.365 Sum_probs=19.5
Q ss_pred eeeEEEeecCCCCchhHHhHh
Q 004481 531 LQKLLLVGCSGSGTSTIFKQA 551 (750)
Q Consensus 531 ~iKLLLLGaGESGKSTILKQM 551 (750)
.+||+++|..++||||++.++
T Consensus 2 ~~~i~i~G~~~~GKstli~~l 22 (174)
T cd01895 2 PIRIAIIGRPNVGKSSLVNAL 22 (174)
T ss_pred CcEEEEEcCCCCCHHHHHHHH
Confidence 578999999999999999986
No 64
>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=90.97 E-value=0.14 Score=50.48 Aligned_cols=21 Identities=33% Similarity=0.551 Sum_probs=19.2
Q ss_pred eeEEEeecCCCCchhHHhHhh
Q 004481 532 QKLLLVGCSGSGTSTIFKQAK 552 (750)
Q Consensus 532 iKLLLLGaGESGKSTILKQMK 552 (750)
+||+++|..++||||+++++.
T Consensus 1 ~KivivG~~~vGKTsli~~l~ 21 (201)
T cd04107 1 LKVLVIGDLGVGKTSIIKRYV 21 (201)
T ss_pred CEEEEECCCCCCHHHHHHHHH
Confidence 589999999999999999864
No 65
>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily. This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali
Probab=90.90 E-value=0.15 Score=47.20 Aligned_cols=21 Identities=38% Similarity=0.480 Sum_probs=19.3
Q ss_pred eeeEEEeecCCCCchhHHhHh
Q 004481 531 LQKLLLVGCSGSGTSTIFKQA 551 (750)
Q Consensus 531 ~iKLLLLGaGESGKSTILKQM 551 (750)
.+||+++|.+++||||+++++
T Consensus 2 ~~ki~i~G~~~~GKtsl~~~~ 22 (164)
T cd04145 2 TYKLVVVGGGGVGKSALTIQF 22 (164)
T ss_pred ceEEEEECCCCCcHHHHHHHH
Confidence 479999999999999999875
No 66
>cd04140 ARHI_like ARHI subfamily. ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to
Probab=90.85 E-value=0.15 Score=48.16 Aligned_cols=20 Identities=20% Similarity=0.501 Sum_probs=18.9
Q ss_pred eeEEEeecCCCCchhHHhHh
Q 004481 532 QKLLLVGCSGSGTSTIFKQA 551 (750)
Q Consensus 532 iKLLLLGaGESGKSTILKQM 551 (750)
+||+++|.+++||||+++++
T Consensus 2 ~kv~~vG~~~vGKTsli~~~ 21 (165)
T cd04140 2 YRVVVFGAGGVGKSSLVLRF 21 (165)
T ss_pred eEEEEECCCCCCHHHHHHHH
Confidence 79999999999999999985
No 67
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=90.85 E-value=0.14 Score=47.67 Aligned_cols=20 Identities=30% Similarity=0.624 Sum_probs=18.4
Q ss_pred eeEEEeecCCCCchhHHhHh
Q 004481 532 QKLLLVGCSGSGTSTIFKQA 551 (750)
Q Consensus 532 iKLLLLGaGESGKSTILKQM 551 (750)
+||+++|.++|||||++..+
T Consensus 1 ~ki~viG~~~~GKSsl~~~l 20 (172)
T cd01862 1 LKVIILGDSGVGKTSLMNQY 20 (172)
T ss_pred CEEEEECCCCCCHHHHHHHH
Confidence 58999999999999999875
No 68
>cd04151 Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.
Probab=90.80 E-value=0.14 Score=47.83 Aligned_cols=20 Identities=25% Similarity=0.627 Sum_probs=18.8
Q ss_pred eEEEeecCCCCchhHHhHhh
Q 004481 533 KLLLVGCSGSGTSTIFKQAK 552 (750)
Q Consensus 533 KLLLLGaGESGKSTILKQMK 552 (750)
||+|+|.+++||||+++|+.
T Consensus 1 kv~lvG~~~~GKTsl~~~l~ 20 (158)
T cd04151 1 RILILGLDNAGKTTILYRLQ 20 (158)
T ss_pred CEEEECCCCCCHHHHHHHHc
Confidence 79999999999999999984
No 69
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=90.70 E-value=0.095 Score=51.35 Aligned_cols=21 Identities=33% Similarity=0.642 Sum_probs=19.1
Q ss_pred eeeEEEeecCCCCchhHHhHh
Q 004481 531 LQKLLLVGCSGSGTSTIFKQA 551 (750)
Q Consensus 531 ~iKLLLLGaGESGKSTILKQM 551 (750)
..+++|+|.+++||||+++.+
T Consensus 41 ~~~I~iiG~~g~GKStLl~~l 61 (204)
T cd01878 41 IPTVALVGYTNAGKSTLFNAL 61 (204)
T ss_pred CCeEEEECCCCCCHHHHHHHH
Confidence 579999999999999999764
No 70
>cd04103 Centaurin_gamma Centaurin gamma. The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.
Probab=90.68 E-value=0.15 Score=48.74 Aligned_cols=21 Identities=33% Similarity=0.343 Sum_probs=19.2
Q ss_pred eeEEEeecCCCCchhHHhHhh
Q 004481 532 QKLLLVGCSGSGTSTIFKQAK 552 (750)
Q Consensus 532 iKLLLLGaGESGKSTILKQMK 552 (750)
+||+++|.+++||||+++++.
T Consensus 1 ~ki~vvG~~gvGKTsli~~~~ 21 (158)
T cd04103 1 LKLGIVGNLQSGKSALVHRYL 21 (158)
T ss_pred CEEEEECCCCCcHHHHHHHHH
Confidence 589999999999999999874
No 71
>cd01893 Miro1 Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=90.67 E-value=0.15 Score=48.22 Aligned_cols=21 Identities=24% Similarity=0.512 Sum_probs=19.3
Q ss_pred eeEEEeecCCCCchhHHhHhh
Q 004481 532 QKLLLVGCSGSGTSTIFKQAK 552 (750)
Q Consensus 532 iKLLLLGaGESGKSTILKQMK 552 (750)
+|++++|.+++||||+++++.
T Consensus 1 ~kv~ivG~~~vGKTsl~~~l~ 21 (166)
T cd01893 1 VRIVLIGDEGVGKSSLIMSLV 21 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHH
Confidence 599999999999999999864
No 72
>cd04112 Rab26 Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=90.65 E-value=0.15 Score=49.80 Aligned_cols=21 Identities=33% Similarity=0.563 Sum_probs=19.0
Q ss_pred eeEEEeecCCCCchhHHhHhh
Q 004481 532 QKLLLVGCSGSGTSTIFKQAK 552 (750)
Q Consensus 532 iKLLLLGaGESGKSTILKQMK 552 (750)
+||+|+|..++||||++.++.
T Consensus 1 ~Ki~vvG~~~vGKTSli~~~~ 21 (191)
T cd04112 1 FKVMLLGDSGVGKTCLLVRFK 21 (191)
T ss_pred CEEEEECCCCCCHHHHHHHHh
Confidence 589999999999999998863
No 73
>PLN03108 Rab family protein; Provisional
Probab=90.63 E-value=0.16 Score=50.85 Aligned_cols=23 Identities=30% Similarity=0.486 Sum_probs=20.8
Q ss_pred ceeeEEEeecCCCCchhHHhHhh
Q 004481 530 TLQKLLLVGCSGSGTSTIFKQAK 552 (750)
Q Consensus 530 r~iKLLLLGaGESGKSTILKQMK 552 (750)
..+||+|||..++|||||++++.
T Consensus 5 ~~~kivivG~~gvGKStLi~~l~ 27 (210)
T PLN03108 5 YLFKYIIIGDTGVGKSCLLLQFT 27 (210)
T ss_pred cceEEEEECCCCCCHHHHHHHHH
Confidence 46899999999999999999874
No 74
>cd01863 Rab18 Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos
Probab=90.56 E-value=0.16 Score=47.12 Aligned_cols=21 Identities=38% Similarity=0.621 Sum_probs=19.2
Q ss_pred eeEEEeecCCCCchhHHhHhh
Q 004481 532 QKLLLVGCSGSGTSTIFKQAK 552 (750)
Q Consensus 532 iKLLLLGaGESGKSTILKQMK 552 (750)
+|++++|..++||||++.++.
T Consensus 1 ~ki~v~G~~~~GKSsli~~l~ 21 (161)
T cd01863 1 LKILLIGDSGVGKSSLLLRFT 21 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHH
Confidence 599999999999999998864
No 75
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=90.52 E-value=0.17 Score=46.33 Aligned_cols=22 Identities=36% Similarity=0.498 Sum_probs=18.7
Q ss_pred eeeEEEeecCCCCchhHHhHhh
Q 004481 531 LQKLLLVGCSGSGTSTIFKQAK 552 (750)
Q Consensus 531 ~iKLLLLGaGESGKSTILKQMK 552 (750)
--.+.++|..||||||++|-+-
T Consensus 11 g~~~~i~G~nGsGKStLl~~l~ 32 (137)
T PF00005_consen 11 GEIVAIVGPNGSGKSTLLKALA 32 (137)
T ss_dssp TSEEEEEESTTSSHHHHHHHHT
T ss_pred CCEEEEEccCCCccccceeeec
Confidence 3468999999999999999654
No 76
>cd04110 Rab35 Rab35 subfamily. Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is
Probab=90.51 E-value=0.17 Score=49.95 Aligned_cols=23 Identities=39% Similarity=0.599 Sum_probs=20.7
Q ss_pred ceeeEEEeecCCCCchhHHhHhh
Q 004481 530 TLQKLLLVGCSGSGTSTIFKQAK 552 (750)
Q Consensus 530 r~iKLLLLGaGESGKSTILKQMK 552 (750)
..+|++++|.+++|||||+.++.
T Consensus 5 ~~~kivvvG~~~vGKTsli~~l~ 27 (199)
T cd04110 5 HLFKLLIIGDSGVGKSSLLLRFA 27 (199)
T ss_pred ceeEEEEECCCCCCHHHHHHHHh
Confidence 47899999999999999998873
No 77
>cd04122 Rab14 Rab14 subfamily. Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT
Probab=90.51 E-value=0.17 Score=47.73 Aligned_cols=22 Identities=27% Similarity=0.516 Sum_probs=19.8
Q ss_pred eeeEEEeecCCCCchhHHhHhh
Q 004481 531 LQKLLLVGCSGSGTSTIFKQAK 552 (750)
Q Consensus 531 ~iKLLLLGaGESGKSTILKQMK 552 (750)
.+|++++|..++||||++.++.
T Consensus 2 ~~ki~iiG~~~vGKTsli~~~~ 23 (166)
T cd04122 2 IFKYIIIGDMGVGKSCLLHQFT 23 (166)
T ss_pred ceEEEEECCCCCCHHHHHHHHh
Confidence 3799999999999999999863
No 78
>cd04134 Rho3 Rho3 subfamily. Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=90.51 E-value=0.16 Score=49.56 Aligned_cols=21 Identities=14% Similarity=0.444 Sum_probs=19.0
Q ss_pred eeEEEeecCCCCchhHHhHhh
Q 004481 532 QKLLLVGCSGSGTSTIFKQAK 552 (750)
Q Consensus 532 iKLLLLGaGESGKSTILKQMK 552 (750)
.||+|+|.+++||||+++++.
T Consensus 1 ~kivivG~~~vGKTsli~~~~ 21 (189)
T cd04134 1 RKVVVLGDGACGKTSLLNVFT 21 (189)
T ss_pred CEEEEECCCCCCHHHHHHHHh
Confidence 389999999999999999863
No 79
>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le
Probab=90.45 E-value=0.17 Score=48.14 Aligned_cols=21 Identities=24% Similarity=0.379 Sum_probs=19.4
Q ss_pred eeEEEeecCCCCchhHHhHhh
Q 004481 532 QKLLLVGCSGSGTSTIFKQAK 552 (750)
Q Consensus 532 iKLLLLGaGESGKSTILKQMK 552 (750)
.||+|+|..++||||+++++.
T Consensus 2 ~kv~l~G~~g~GKTtl~~~~~ 22 (180)
T cd04137 2 RKIAVLGSRSVGKSSLTVQFV 22 (180)
T ss_pred eEEEEECCCCCCHHHHHHHHH
Confidence 589999999999999999865
No 80
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=90.44 E-value=0.19 Score=45.54 Aligned_cols=22 Identities=23% Similarity=0.309 Sum_probs=19.6
Q ss_pred ceeeEEEeecCCCCchhHHhHh
Q 004481 530 TLQKLLLVGCSGSGTSTIFKQA 551 (750)
Q Consensus 530 r~iKLLLLGaGESGKSTILKQM 551 (750)
+..|++|+|..+|||||++..+
T Consensus 2 ~~~~i~~~G~~g~GKttl~~~l 23 (168)
T cd04163 2 KSGFVAIVGRPNVGKSTLLNAL 23 (168)
T ss_pred ceeEEEEECCCCCCHHHHHHHH
Confidence 3578999999999999999885
No 81
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=90.43 E-value=0.17 Score=43.73 Aligned_cols=25 Identities=28% Similarity=0.421 Sum_probs=20.2
Q ss_pred eeEEEeecCCCCchhHHhHhhhhhc
Q 004481 532 QKLLLVGCSGSGTSTIFKQAKILYK 556 (750)
Q Consensus 532 iKLLLLGaGESGKSTILKQMKILh~ 556 (750)
..++|.|+.||||||+++.+--...
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~~~ 27 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALARELG 27 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhccC
Confidence 4689999999999999998644433
No 82
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=90.43 E-value=0.16 Score=50.46 Aligned_cols=23 Identities=39% Similarity=0.511 Sum_probs=20.0
Q ss_pred cceeeEEEeecCCCCchhHHhHh
Q 004481 529 RTLQKLLLVGCSGSGTSTIFKQA 551 (750)
Q Consensus 529 kr~iKLLLLGaGESGKSTILKQM 551 (750)
...+|++|+|..+|||||+++++
T Consensus 7 ~~~~kv~liG~~g~GKTtLi~~~ 29 (215)
T PTZ00132 7 VPEFKLILVGDGGVGKTTFVKRH 29 (215)
T ss_pred CCCceEEEECCCCCCHHHHHHHH
Confidence 45689999999999999999754
No 83
>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi
Probab=90.43 E-value=0.17 Score=47.82 Aligned_cols=22 Identities=45% Similarity=0.626 Sum_probs=20.2
Q ss_pred eeeEEEeecCCCCchhHHhHhh
Q 004481 531 LQKLLLVGCSGSGTSTIFKQAK 552 (750)
Q Consensus 531 ~iKLLLLGaGESGKSTILKQMK 552 (750)
.+||+++|..++||||++.++.
T Consensus 3 ~~ki~vvG~~~~GKSsl~~~~~ 24 (167)
T cd01867 3 LFKLLLIGDSGVGKSCLLLRFS 24 (167)
T ss_pred ceEEEEECCCCCCHHHHHHHHh
Confidence 5899999999999999999864
No 84
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=90.42 E-value=0.15 Score=50.11 Aligned_cols=22 Identities=27% Similarity=0.462 Sum_probs=19.0
Q ss_pred eEEEeecCCCCchhHHhHhhhh
Q 004481 533 KLLLVGCSGSGTSTIFKQAKIL 554 (750)
Q Consensus 533 KLLLLGaGESGKSTILKQMKIL 554 (750)
.++|+|+.|||||||+|.+--+
T Consensus 4 ~i~l~G~sGsGKsTl~~~l~~~ 25 (186)
T PRK10078 4 LIWLMGPSGSGKDSLLAALRQR 25 (186)
T ss_pred EEEEECCCCCCHHHHHHHHhcc
Confidence 5789999999999999998443
No 85
>cd01874 Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi
Probab=90.39 E-value=0.18 Score=48.91 Aligned_cols=22 Identities=18% Similarity=0.264 Sum_probs=19.8
Q ss_pred eeeEEEeecCCCCchhHHhHhh
Q 004481 531 LQKLLLVGCSGSGTSTIFKQAK 552 (750)
Q Consensus 531 ~iKLLLLGaGESGKSTILKQMK 552 (750)
.+|++++|.+++|||||++++.
T Consensus 1 ~~ki~vvG~~~vGKTsl~~~~~ 22 (175)
T cd01874 1 TIKCVVVGDGAVGKTCLLISYT 22 (175)
T ss_pred CeEEEEECCCCCCHHHHHHHHH
Confidence 3799999999999999998764
No 86
>cd04101 RabL4 RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.
Probab=90.36 E-value=0.17 Score=47.00 Aligned_cols=20 Identities=15% Similarity=0.252 Sum_probs=18.2
Q ss_pred eeEEEeecCCCCchhHHhHh
Q 004481 532 QKLLLVGCSGSGTSTIFKQA 551 (750)
Q Consensus 532 iKLLLLGaGESGKSTILKQM 551 (750)
+|++++|.++|||||++..+
T Consensus 1 ~ki~vvG~~~~GKtsl~~~l 20 (164)
T cd04101 1 LRCAVVGDPAVGKTAFVQMF 20 (164)
T ss_pred CEEEEECCCCCCHHHHHHHH
Confidence 58999999999999999764
No 87
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=90.32 E-value=0.16 Score=49.08 Aligned_cols=23 Identities=30% Similarity=0.504 Sum_probs=19.2
Q ss_pred eEEEeecCCCCchhHHhHhhhhh
Q 004481 533 KLLLVGCSGSGTSTIFKQAKILY 555 (750)
Q Consensus 533 KLLLLGaGESGKSTILKQMKILh 555 (750)
-++|+|..||||||++|++--++
T Consensus 3 ~~~i~G~sGsGKttl~~~l~~~~ 25 (179)
T TIGR02322 3 LIYVVGPSGAGKDTLLDYARARL 25 (179)
T ss_pred EEEEECCCCCCHHHHHHHHHHHc
Confidence 36899999999999999975443
No 88
>cd04158 ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra
Probab=90.29 E-value=0.17 Score=48.32 Aligned_cols=20 Identities=30% Similarity=0.617 Sum_probs=18.3
Q ss_pred eEEEeecCCCCchhHHhHhh
Q 004481 533 KLLLVGCSGSGTSTIFKQAK 552 (750)
Q Consensus 533 KLLLLGaGESGKSTILKQMK 552 (750)
|++|+|..++||||+++++.
T Consensus 1 ~vvlvG~~~~GKTsl~~~l~ 20 (169)
T cd04158 1 RVVTLGLDGAGKTTILFKLK 20 (169)
T ss_pred CEEEECCCCCCHHHHHHHHh
Confidence 78999999999999999764
No 89
>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.
Probab=90.27 E-value=0.18 Score=45.79 Aligned_cols=21 Identities=24% Similarity=0.460 Sum_probs=19.1
Q ss_pred eeEEEeecCCCCchhHHhHhh
Q 004481 532 QKLLLVGCSGSGTSTIFKQAK 552 (750)
Q Consensus 532 iKLLLLGaGESGKSTILKQMK 552 (750)
+|++|+|..++||||++..+.
T Consensus 2 ~~i~l~G~~~~GKstli~~l~ 22 (157)
T cd04164 2 IKVVIVGKPNVGKSSLLNALA 22 (157)
T ss_pred cEEEEECCCCCCHHHHHHHHH
Confidence 589999999999999999864
No 90
>cd04129 Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).
Probab=90.27 E-value=0.17 Score=49.21 Aligned_cols=21 Identities=24% Similarity=0.509 Sum_probs=19.3
Q ss_pred eeEEEeecCCCCchhHHhHhh
Q 004481 532 QKLLLVGCSGSGTSTIFKQAK 552 (750)
Q Consensus 532 iKLLLLGaGESGKSTILKQMK 552 (750)
.|++++|..++||||+++++.
T Consensus 2 ~Ki~ivG~~g~GKStLl~~l~ 22 (187)
T cd04129 2 RKLVIVGDGACGKTSLLSVFT 22 (187)
T ss_pred eEEEEECCCCCCHHHHHHHHH
Confidence 489999999999999999874
No 91
>cd01870 RhoA_like RhoA-like subfamily. The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl
Probab=90.24 E-value=0.18 Score=47.49 Aligned_cols=21 Identities=24% Similarity=0.442 Sum_probs=18.5
Q ss_pred eeEEEeecCCCCchhHHhHhh
Q 004481 532 QKLLLVGCSGSGTSTIFKQAK 552 (750)
Q Consensus 532 iKLLLLGaGESGKSTILKQMK 552 (750)
.|++++|..++||||+++++.
T Consensus 2 ~ki~iiG~~~~GKTsl~~~~~ 22 (175)
T cd01870 2 KKLVIVGDGACGKTCLLIVFS 22 (175)
T ss_pred cEEEEECCCCCCHHHHHHHHh
Confidence 489999999999999997653
No 92
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=90.11 E-value=0.17 Score=45.95 Aligned_cols=20 Identities=20% Similarity=0.411 Sum_probs=18.3
Q ss_pred eEEEeecCCCCchhHHhHhh
Q 004481 533 KLLLVGCSGSGTSTIFKQAK 552 (750)
Q Consensus 533 KLLLLGaGESGKSTILKQMK 552 (750)
+++|+|..++||||++++|.
T Consensus 1 ~i~l~G~~g~GKTtL~~~l~ 20 (170)
T cd01876 1 EIAFAGRSNVGKSSLINALT 20 (170)
T ss_pred CEEEEcCCCCCHHHHHHHHh
Confidence 48999999999999999876
No 93
>cd04125 RabA_like RabA-like subfamily. RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=90.04 E-value=0.18 Score=48.76 Aligned_cols=21 Identities=29% Similarity=0.555 Sum_probs=19.2
Q ss_pred eeEEEeecCCCCchhHHhHhh
Q 004481 532 QKLLLVGCSGSGTSTIFKQAK 552 (750)
Q Consensus 532 iKLLLLGaGESGKSTILKQMK 552 (750)
+||+++|..++||||+++++.
T Consensus 1 ~ki~v~G~~~vGKSsli~~~~ 21 (188)
T cd04125 1 FKVVIIGDYGVGKSSLLKRFT 21 (188)
T ss_pred CEEEEECCCCCCHHHHHHHHh
Confidence 589999999999999999864
No 94
>cd04118 Rab24 Rab24 subfamily. Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita
Probab=89.83 E-value=0.19 Score=48.55 Aligned_cols=21 Identities=14% Similarity=0.393 Sum_probs=19.3
Q ss_pred eeEEEeecCCCCchhHHhHhh
Q 004481 532 QKLLLVGCSGSGTSTIFKQAK 552 (750)
Q Consensus 532 iKLLLLGaGESGKSTILKQMK 552 (750)
+||+++|.+++|||||++++.
T Consensus 1 ~ki~vvG~~~vGKSsLi~~~~ 21 (193)
T cd04118 1 VKVVMLGKESVGKTSLVERYV 21 (193)
T ss_pred CEEEEECCCCCCHHHHHHHHH
Confidence 589999999999999999974
No 95
>cd04132 Rho4_like Rho4-like subfamily. Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=89.79 E-value=0.2 Score=48.12 Aligned_cols=21 Identities=24% Similarity=0.506 Sum_probs=19.1
Q ss_pred eeEEEeecCCCCchhHHhHhh
Q 004481 532 QKLLLVGCSGSGTSTIFKQAK 552 (750)
Q Consensus 532 iKLLLLGaGESGKSTILKQMK 552 (750)
+||+++|..++||||++.++.
T Consensus 1 ~ki~vvG~~~vGKTsli~~l~ 21 (187)
T cd04132 1 KKIVVVGDGGCGKTCLLIVYS 21 (187)
T ss_pred CeEEEECCCCCCHHHHHHHHH
Confidence 599999999999999999863
No 96
>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is
Probab=89.76 E-value=0.2 Score=47.85 Aligned_cols=21 Identities=43% Similarity=0.624 Sum_probs=18.9
Q ss_pred eeEEEeecCCCCchhHHhHhh
Q 004481 532 QKLLLVGCSGSGTSTIFKQAK 552 (750)
Q Consensus 532 iKLLLLGaGESGKSTILKQMK 552 (750)
+||+++|..++||||++.++.
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~ 21 (166)
T cd00877 1 FKLVLVGDGGTGKTTFVKRHL 21 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHH
Confidence 599999999999999998763
No 97
>cd04175 Rap1 Rap1 subgroup. The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n
Probab=89.75 E-value=0.21 Score=46.76 Aligned_cols=22 Identities=32% Similarity=0.424 Sum_probs=19.5
Q ss_pred eeeEEEeecCCCCchhHHhHhh
Q 004481 531 LQKLLLVGCSGSGTSTIFKQAK 552 (750)
Q Consensus 531 ~iKLLLLGaGESGKSTILKQMK 552 (750)
++|++++|..++||||+++.+.
T Consensus 1 ~~ki~~~G~~~~GKTsli~~~~ 22 (164)
T cd04175 1 EYKLVVLGSGGVGKSALTVQFV 22 (164)
T ss_pred CcEEEEECCCCCCHHHHHHHHH
Confidence 4799999999999999988854
No 98
>PRK03839 putative kinase; Provisional
Probab=89.73 E-value=0.2 Score=48.71 Aligned_cols=22 Identities=23% Similarity=0.314 Sum_probs=18.8
Q ss_pred eEEEeecCCCCchhHHhHhhhh
Q 004481 533 KLLLVGCSGSGTSTIFKQAKIL 554 (750)
Q Consensus 533 KLLLLGaGESGKSTILKQMKIL 554 (750)
+|+|+|..||||||+.|++-=.
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~ 23 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEK 23 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999876443
No 99
>cd04156 ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h
Probab=89.67 E-value=0.2 Score=46.40 Aligned_cols=20 Identities=35% Similarity=0.630 Sum_probs=18.4
Q ss_pred eEEEeecCCCCchhHHhHhh
Q 004481 533 KLLLVGCSGSGTSTIFKQAK 552 (750)
Q Consensus 533 KLLLLGaGESGKSTILKQMK 552 (750)
||+++|..++||||+++++.
T Consensus 1 ~i~i~G~~~~GKTsl~~~~~ 20 (160)
T cd04156 1 QVLLLGLDSAGKSTLLYKLK 20 (160)
T ss_pred CEEEEcCCCCCHHHHHHHHh
Confidence 68999999999999999874
No 100
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=89.58 E-value=0.21 Score=45.05 Aligned_cols=20 Identities=30% Similarity=0.496 Sum_probs=17.9
Q ss_pred eEEEeecCCCCchhHHhHhh
Q 004481 533 KLLLVGCSGSGTSTIFKQAK 552 (750)
Q Consensus 533 KLLLLGaGESGKSTILKQMK 552 (750)
.++|+|..++||||+++++.
T Consensus 1 ~i~i~G~~~~GKssl~~~l~ 20 (159)
T cd04159 1 EITLVGLQNSGKTTLVNVIA 20 (159)
T ss_pred CEEEEcCCCCCHHHHHHHHc
Confidence 37899999999999999874
No 101
>cd01866 Rab2 Rab2 subfamily. Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur
Probab=89.46 E-value=0.23 Score=47.11 Aligned_cols=22 Identities=32% Similarity=0.537 Sum_probs=20.1
Q ss_pred eeeEEEeecCCCCchhHHhHhh
Q 004481 531 LQKLLLVGCSGSGTSTIFKQAK 552 (750)
Q Consensus 531 ~iKLLLLGaGESGKSTILKQMK 552 (750)
.+|++++|..++||||++.++.
T Consensus 4 ~~ki~vvG~~~vGKSsLl~~l~ 25 (168)
T cd01866 4 LFKYIIIGDTGVGKSCLLLQFT 25 (168)
T ss_pred ceEEEEECCCCCCHHHHHHHHH
Confidence 5799999999999999999864
No 102
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=89.46 E-value=0.21 Score=46.81 Aligned_cols=20 Identities=40% Similarity=0.561 Sum_probs=17.3
Q ss_pred EEEeecCCCCchhHHhHhhh
Q 004481 534 LLLVGCSGSGTSTIFKQAKI 553 (750)
Q Consensus 534 LLLLGaGESGKSTILKQMKI 553 (750)
++|.|..+|||||+.|++.-
T Consensus 2 i~l~G~~GsGKST~a~~l~~ 21 (150)
T cd02021 2 IVVMGVSGSGKSTVGKALAE 21 (150)
T ss_pred EEEEcCCCCCHHHHHHHHHh
Confidence 68899999999999998643
No 103
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=89.31 E-value=0.22 Score=48.04 Aligned_cols=22 Identities=32% Similarity=0.366 Sum_probs=18.8
Q ss_pred eEEEeecCCCCchhHHhHhhhh
Q 004481 533 KLLLVGCSGSGTSTIFKQAKIL 554 (750)
Q Consensus 533 KLLLLGaGESGKSTILKQMKIL 554 (750)
.++|+|+.+|||||++|.|.-.
T Consensus 3 ii~l~G~~GsGKsTl~~~L~~~ 24 (180)
T TIGR03263 3 LIVISGPSGVGKSTLVKALLEE 24 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHcc
Confidence 4789999999999999987543
No 104
>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB. Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.
Probab=89.24 E-value=0.24 Score=47.88 Aligned_cols=26 Identities=15% Similarity=0.236 Sum_probs=22.6
Q ss_pred HhcceeeEEEeecCCCCchhHHhHhh
Q 004481 527 ERRTLQKLLLVGCSGSGTSTIFKQAK 552 (750)
Q Consensus 527 ~~kr~iKLLLLGaGESGKSTILKQMK 552 (750)
...+..|++++|..++||||+++++.
T Consensus 14 ~~~~~~~i~ivG~~~~GKStlin~l~ 39 (179)
T TIGR03598 14 PPDDGPEIAFAGRSNVGKSSLINALT 39 (179)
T ss_pred CCCCCCEEEEEcCCCCCHHHHHHHHh
Confidence 33678899999999999999999864
No 105
>PRK14532 adenylate kinase; Provisional
Probab=89.12 E-value=0.24 Score=48.34 Aligned_cols=20 Identities=30% Similarity=0.408 Sum_probs=17.9
Q ss_pred eEEEeecCCCCchhHHhHhh
Q 004481 533 KLLLVGCSGSGTSTIFKQAK 552 (750)
Q Consensus 533 KLLLLGaGESGKSTILKQMK 552 (750)
+|+|+|+.||||||+.+++-
T Consensus 2 ~i~~~G~pGsGKsT~a~~la 21 (188)
T PRK14532 2 NLILFGPPAAGKGTQAKRLV 21 (188)
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 69999999999999988763
No 106
>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.
Probab=89.12 E-value=0.24 Score=48.09 Aligned_cols=21 Identities=14% Similarity=0.433 Sum_probs=19.8
Q ss_pred eeeEEEeecCCCCchhHHhHh
Q 004481 531 LQKLLLVGCSGSGTSTIFKQA 551 (750)
Q Consensus 531 ~iKLLLLGaGESGKSTILKQM 551 (750)
.+||+++|..+|||||+++++
T Consensus 3 ~~kv~~vG~~~~GKTsli~~~ 23 (183)
T cd04152 3 SLHIVMLGLDSAGKTTVLYRL 23 (183)
T ss_pred ceEEEEECCCCCCHHHHHHHH
Confidence 589999999999999999997
No 107
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=89.10 E-value=0.25 Score=49.30 Aligned_cols=21 Identities=29% Similarity=0.401 Sum_probs=19.4
Q ss_pred eeEEEeecCCCCchhHHhHhh
Q 004481 532 QKLLLVGCSGSGTSTIFKQAK 552 (750)
Q Consensus 532 iKLLLLGaGESGKSTILKQMK 552 (750)
-+++|.|+.+|||||++|++-
T Consensus 30 ~~~~l~G~Ng~GKStll~~i~ 50 (202)
T cd03243 30 RLLLITGPNMGGKSTYLRSIG 50 (202)
T ss_pred eEEEEECCCCCccHHHHHHHH
Confidence 578999999999999999986
No 108
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=89.02 E-value=0.23 Score=48.04 Aligned_cols=24 Identities=33% Similarity=0.515 Sum_probs=19.9
Q ss_pred eEEEeecCCCCchhHHhHhhhhhc
Q 004481 533 KLLLVGCSGSGTSTIFKQAKILYK 556 (750)
Q Consensus 533 KLLLLGaGESGKSTILKQMKILh~ 556 (750)
+|+|+|+.+|||||+.+++.=.|+
T Consensus 1 ~I~i~G~pGsGKst~a~~La~~~~ 24 (194)
T cd01428 1 RILLLGPPGSGKGTQAERLAKKYG 24 (194)
T ss_pred CEEEECCCCCCHHHHHHHHHHHcC
Confidence 589999999999999998654443
No 109
>cd04176 Rap2 Rap2 subgroup. The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl
Probab=89.00 E-value=0.26 Score=45.87 Aligned_cols=21 Identities=29% Similarity=0.436 Sum_probs=18.6
Q ss_pred eeeEEEeecCCCCchhHHhHh
Q 004481 531 LQKLLLVGCSGSGTSTIFKQA 551 (750)
Q Consensus 531 ~iKLLLLGaGESGKSTILKQM 551 (750)
.+|++|+|..++||||++..+
T Consensus 1 ~~ki~i~G~~~vGKTsl~~~~ 21 (163)
T cd04176 1 EYKVVVLGSGGVGKSALTVQF 21 (163)
T ss_pred CeEEEEECCCCCCHHHHHHHH
Confidence 379999999999999998664
No 110
>cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=88.93 E-value=0.34 Score=49.34 Aligned_cols=23 Identities=26% Similarity=0.498 Sum_probs=20.7
Q ss_pred EEEeecCCCCchhHHhHhhhhhc
Q 004481 534 LLLVGCSGSGTSTIFKQAKILYK 556 (750)
Q Consensus 534 LLLLGaGESGKSTILKQMKILh~ 556 (750)
..++|+.||||||+++++..+++
T Consensus 28 ~~ivGpNGaGKSTll~~i~~~~G 50 (212)
T cd03274 28 SAIVGPNGSGKSNVIDSMLFVFG 50 (212)
T ss_pred EEEECCCCCCHHHHHHHHHHHhc
Confidence 57899999999999999987766
No 111
>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.
Probab=88.89 E-value=0.24 Score=47.29 Aligned_cols=20 Identities=30% Similarity=0.519 Sum_probs=18.2
Q ss_pred eEEEeecCCCCchhHHhHhh
Q 004481 533 KLLLVGCSGSGTSTIFKQAK 552 (750)
Q Consensus 533 KLLLLGaGESGKSTILKQMK 552 (750)
+|+++|.++|||||+++++.
T Consensus 1 ~i~~~G~~~~GKTsl~~~l~ 20 (167)
T cd04161 1 TLLTVGLDNAGKTTLVSALQ 20 (167)
T ss_pred CEEEECCCCCCHHHHHHHHh
Confidence 58999999999999999875
No 112
>cd04130 Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,
Probab=88.88 E-value=0.26 Score=46.99 Aligned_cols=20 Identities=25% Similarity=0.375 Sum_probs=18.2
Q ss_pred eeEEEeecCCCCchhHHhHh
Q 004481 532 QKLLLVGCSGSGTSTIFKQA 551 (750)
Q Consensus 532 iKLLLLGaGESGKSTILKQM 551 (750)
+|++++|..++||||+++++
T Consensus 1 ~k~~i~G~~~~GKtsl~~~~ 20 (173)
T cd04130 1 LKCVLVGDGAVGKTSLIVSY 20 (173)
T ss_pred CEEEEECCCCCCHHHHHHHH
Confidence 58999999999999999764
No 113
>PTZ00369 Ras-like protein; Provisional
Probab=88.83 E-value=0.28 Score=47.88 Aligned_cols=23 Identities=39% Similarity=0.423 Sum_probs=20.2
Q ss_pred ceeeEEEeecCCCCchhHHhHhh
Q 004481 530 TLQKLLLVGCSGSGTSTIFKQAK 552 (750)
Q Consensus 530 r~iKLLLLGaGESGKSTILKQMK 552 (750)
..+||+++|..++||||+++++.
T Consensus 4 ~~~Ki~iiG~~~~GKTsLi~~~~ 26 (189)
T PTZ00369 4 TEYKLVVVGGGGVGKSALTIQFI 26 (189)
T ss_pred cceEEEEECCCCCCHHHHHHHHh
Confidence 45899999999999999998654
No 114
>PRK13949 shikimate kinase; Provisional
Probab=88.74 E-value=0.26 Score=48.44 Aligned_cols=20 Identities=35% Similarity=0.617 Sum_probs=18.3
Q ss_pred eEEEeecCCCCchhHHhHhh
Q 004481 533 KLLLVGCSGSGTSTIFKQAK 552 (750)
Q Consensus 533 KLLLLGaGESGKSTILKQMK 552 (750)
||+|+|..+|||||+.|.+-
T Consensus 3 ~I~liG~~GsGKstl~~~La 22 (169)
T PRK13949 3 RIFLVGYMGAGKTTLGKALA 22 (169)
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 79999999999999999764
No 115
>cd04157 Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A
Probab=88.67 E-value=0.26 Score=45.51 Aligned_cols=20 Identities=45% Similarity=0.703 Sum_probs=18.0
Q ss_pred eEEEeecCCCCchhHHhHhh
Q 004481 533 KLLLVGCSGSGTSTIFKQAK 552 (750)
Q Consensus 533 KLLLLGaGESGKSTILKQMK 552 (750)
+++|+|..++||||+++++.
T Consensus 1 ~i~~vG~~~~GKTsl~~~l~ 20 (162)
T cd04157 1 NILVVGLDNSGKTTIINQLK 20 (162)
T ss_pred CEEEECCCCCCHHHHHHHHc
Confidence 58999999999999998864
No 116
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=88.64 E-value=0.26 Score=49.76 Aligned_cols=21 Identities=29% Similarity=0.526 Sum_probs=18.3
Q ss_pred eEEEeecCCCCchhHHhHhhh
Q 004481 533 KLLLVGCSGSGTSTIFKQAKI 553 (750)
Q Consensus 533 KLLLLGaGESGKSTILKQMKI 553 (750)
-++|+|+.+|||||++|++..
T Consensus 27 ~~~ltGpNg~GKSTllr~i~~ 47 (199)
T cd03283 27 GILITGSNMSGKSTFLRTIGV 47 (199)
T ss_pred EEEEECCCCCChHHHHHHHHH
Confidence 358999999999999999763
No 117
>TIGR02528 EutP ethanolamine utilization protein, EutP. This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.
Probab=88.62 E-value=0.27 Score=44.96 Aligned_cols=19 Identities=21% Similarity=0.653 Sum_probs=17.9
Q ss_pred eEEEeecCCCCchhHHhHh
Q 004481 533 KLLLVGCSGSGTSTIFKQA 551 (750)
Q Consensus 533 KLLLLGaGESGKSTILKQM 551 (750)
||.|+|.+++||||++.++
T Consensus 2 kv~liG~~~vGKSsL~~~l 20 (142)
T TIGR02528 2 RIMFIGSVGCGKTTLTQAL 20 (142)
T ss_pred eEEEECCCCCCHHHHHHHH
Confidence 8999999999999999875
No 118
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=88.61 E-value=0.22 Score=47.39 Aligned_cols=19 Identities=42% Similarity=0.655 Sum_probs=16.9
Q ss_pred EEEeecCCCCchhHHhHhh
Q 004481 534 LLLVGCSGSGTSTIFKQAK 552 (750)
Q Consensus 534 LLLLGaGESGKSTILKQMK 552 (750)
++|.|..||||||+.+++.
T Consensus 1 i~l~G~~GsGKSTla~~l~ 19 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALA 19 (163)
T ss_pred CEEECCCCCCHHHHHHHHH
Confidence 5789999999999999865
No 119
>cd01875 RhoG RhoG subfamily. RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin
Probab=88.58 E-value=0.3 Score=48.00 Aligned_cols=22 Identities=18% Similarity=0.212 Sum_probs=20.0
Q ss_pred eeeEEEeecCCCCchhHHhHhh
Q 004481 531 LQKLLLVGCSGSGTSTIFKQAK 552 (750)
Q Consensus 531 ~iKLLLLGaGESGKSTILKQMK 552 (750)
.+|+++||.+++|||||+.++.
T Consensus 3 ~~ki~~vG~~~vGKTsli~~~~ 24 (191)
T cd01875 3 SIKCVVVGDGAVGKTCLLICYT 24 (191)
T ss_pred cEEEEEECCCCCCHHHHHHHHH
Confidence 4799999999999999999864
No 120
>smart00064 FYVE Protein present in Fab1, YOTB, Vac1, and EEA1. The FYVE zinc finger is named after four proteins where it was first found: Fab1, YOTB/ZK632.12, Vac1, and EEA1. The FYVE finger has been shown to bind two Zn2+ ions. The FYVE finger has eight potential zinc coordinating cysteine positions. The FYVE finger is structurally related to the cd04109 Rab28 Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs
Probab=88.50 E-value=0.27 Score=49.23 Aligned_cols=21 Identities=14% Similarity=0.403 Sum_probs=19.1
Q ss_pred eeEEEeecCCCCchhHHhHhh
Q 004481 532 QKLLLVGCSGSGTSTIFKQAK 552 (750)
Q Consensus 532 iKLLLLGaGESGKSTILKQMK 552 (750)
+||+++|.+++||||++.++.
T Consensus 1 ~Ki~ivG~~~vGKSsLi~~l~ 21 (215)
T cd04109 1 FKIVVLGDGAVGKTSLCRRFA 21 (215)
T ss_pred CEEEEECcCCCCHHHHHHHHh
Confidence 589999999999999999863
No 122
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=88.46 E-value=0.36 Score=49.64 Aligned_cols=26 Identities=31% Similarity=0.441 Sum_probs=22.2
Q ss_pred eeEEEeecCCCCchhHHhHhhhhhcC
Q 004481 532 QKLLLVGCSGSGTSTIFKQAKILYKA 557 (750)
Q Consensus 532 iKLLLLGaGESGKSTILKQMKILh~~ 557 (750)
=.+++.|++||||||++||+-.|-.|
T Consensus 30 e~iaitGPSG~GKStllk~va~Lisp 55 (223)
T COG4619 30 EFIAITGPSGCGKSTLLKIVASLISP 55 (223)
T ss_pred ceEEEeCCCCccHHHHHHHHHhccCC
Confidence 35789999999999999999877654
No 123
>PRK14530 adenylate kinase; Provisional
Probab=88.42 E-value=0.28 Score=49.43 Aligned_cols=24 Identities=25% Similarity=0.461 Sum_probs=20.0
Q ss_pred eEEEeecCCCCchhHHhHhhhhhc
Q 004481 533 KLLLVGCSGSGTSTIFKQAKILYK 556 (750)
Q Consensus 533 KLLLLGaGESGKSTILKQMKILh~ 556 (750)
+|+|+|+.||||||+.+++--.|+
T Consensus 5 ~I~i~G~pGsGKsT~~~~La~~~~ 28 (215)
T PRK14530 5 RILLLGAPGAGKGTQSSNLAEEFG 28 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 799999999999999998743333
No 124
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=88.36 E-value=0.28 Score=47.41 Aligned_cols=22 Identities=23% Similarity=0.397 Sum_probs=18.3
Q ss_pred EEEeecCCCCchhHHhHhhhhh
Q 004481 534 LLLVGCSGSGTSTIFKQAKILY 555 (750)
Q Consensus 534 LLLLGaGESGKSTILKQMKILh 555 (750)
|+++|+.||||||+.+++.--+
T Consensus 2 i~i~G~pGsGKst~a~~la~~~ 23 (183)
T TIGR01359 2 VFVLGGPGSGKGTQCAKIVENF 23 (183)
T ss_pred EEEECCCCCCHHHHHHHHHHHc
Confidence 6899999999999988865433
No 125
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=88.36 E-value=0.28 Score=47.13 Aligned_cols=21 Identities=29% Similarity=0.498 Sum_probs=18.1
Q ss_pred eeEEEeecCCCCchhHHhHhh
Q 004481 532 QKLLLVGCSGSGTSTIFKQAK 552 (750)
Q Consensus 532 iKLLLLGaGESGKSTILKQMK 552 (750)
-.++++|..||||||+.+.+-
T Consensus 4 ~ii~i~G~~GsGKsTl~~~l~ 24 (188)
T TIGR01360 4 KIIFIVGGPGSGKGTQCEKIV 24 (188)
T ss_pred cEEEEECCCCCCHHHHHHHHH
Confidence 357889999999999998764
No 126
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=88.34 E-value=0.26 Score=51.59 Aligned_cols=27 Identities=41% Similarity=0.575 Sum_probs=22.8
Q ss_pred eeeEEEeecCCCCchhHHhHhhhhhcC
Q 004481 531 LQKLLLVGCSGSGTSTIFKQAKILYKA 557 (750)
Q Consensus 531 ~iKLLLLGaGESGKSTILKQMKILh~~ 557 (750)
.-.++|+|+.||||||++|.+--|..|
T Consensus 30 Ge~~~i~G~nGsGKSTL~~~l~GLl~p 56 (235)
T COG1122 30 GERVLLIGPNGSGKSTLLKLLNGLLKP 56 (235)
T ss_pred CCEEEEECCCCCCHHHHHHHHcCcCcC
Confidence 346899999999999999998866654
No 127
>PF05729 NACHT: NACHT domain
Probab=88.31 E-value=0.3 Score=45.14 Aligned_cols=19 Identities=37% Similarity=0.644 Sum_probs=16.5
Q ss_pred EEEeecCCCCchhHHhHhh
Q 004481 534 LLLVGCSGSGTSTIFKQAK 552 (750)
Q Consensus 534 LLLLGaGESGKSTILKQMK 552 (750)
|+|.|.+|+||||+++.+-
T Consensus 3 l~I~G~~G~GKStll~~~~ 21 (166)
T PF05729_consen 3 LWISGEPGSGKSTLLRKLA 21 (166)
T ss_pred EEEECCCCCChHHHHHHHH
Confidence 6889999999999998643
No 128
>TIGR01351 adk adenylate kinases. Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.
Probab=88.23 E-value=0.28 Score=49.22 Aligned_cols=21 Identities=38% Similarity=0.528 Sum_probs=18.5
Q ss_pred eEEEeecCCCCchhHHhHhhh
Q 004481 533 KLLLVGCSGSGTSTIFKQAKI 553 (750)
Q Consensus 533 KLLLLGaGESGKSTILKQMKI 553 (750)
||+++|+.+|||||+.+++-=
T Consensus 1 rI~i~G~pGsGKsT~a~~La~ 21 (210)
T TIGR01351 1 RLVLLGPPGSGKGTQAKRIAE 21 (210)
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999988643
No 129
>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re
Probab=88.00 E-value=0.31 Score=46.92 Aligned_cols=20 Identities=20% Similarity=0.375 Sum_probs=18.6
Q ss_pred eEEEeecCCCCchhHHhHhh
Q 004481 533 KLLLVGCSGSGTSTIFKQAK 552 (750)
Q Consensus 533 KLLLLGaGESGKSTILKQMK 552 (750)
||+++|..++|||||+.|+.
T Consensus 2 ki~ivG~~~vGKTsli~~~~ 21 (170)
T cd04108 2 KVIVVGDLSVGKTCLINRFC 21 (170)
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 89999999999999999864
No 130
>PRK00300 gmk guanylate kinase; Provisional
Probab=87.95 E-value=0.3 Score=48.11 Aligned_cols=23 Identities=35% Similarity=0.384 Sum_probs=19.4
Q ss_pred eeEEEeecCCCCchhHHhHhhhh
Q 004481 532 QKLLLVGCSGSGTSTIFKQAKIL 554 (750)
Q Consensus 532 iKLLLLGaGESGKSTILKQMKIL 554 (750)
.-++|+|+.||||||+++++--.
T Consensus 6 ~~i~i~G~sGsGKstl~~~l~~~ 28 (205)
T PRK00300 6 LLIVLSGPSGAGKSTLVKALLER 28 (205)
T ss_pred CEEEEECCCCCCHHHHHHHHHhh
Confidence 45899999999999999987544
No 131
>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu
Probab=87.93 E-value=0.31 Score=45.16 Aligned_cols=20 Identities=35% Similarity=0.758 Sum_probs=18.3
Q ss_pred eEEEeecCCCCchhHHhHhh
Q 004481 533 KLLLVGCSGSGTSTIFKQAK 552 (750)
Q Consensus 533 KLLLLGaGESGKSTILKQMK 552 (750)
||.++|..+|||||+++++-
T Consensus 1 ki~iiG~~~~GKssli~~~~ 20 (158)
T cd00878 1 RILILGLDGAGKTTILYKLK 20 (158)
T ss_pred CEEEEcCCCCCHHHHHHHHh
Confidence 79999999999999999864
No 132
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=87.90 E-value=0.31 Score=46.93 Aligned_cols=26 Identities=15% Similarity=0.236 Sum_probs=22.6
Q ss_pred HhcceeeEEEeecCCCCchhHHhHhh
Q 004481 527 ERRTLQKLLLVGCSGSGTSTIFKQAK 552 (750)
Q Consensus 527 ~~kr~iKLLLLGaGESGKSTILKQMK 552 (750)
......|+.|+|..++||||+++.+.
T Consensus 20 ~~~~~~~v~ivG~~~~GKSsli~~l~ 45 (196)
T PRK00454 20 PPDDGPEIAFAGRSNVGKSSLINALT 45 (196)
T ss_pred CCCCCCEEEEEcCCCCCHHHHHHHHh
Confidence 34577899999999999999999875
No 133
>cd01871 Rac1_like Rac1-like subfamily. The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti
Probab=87.87 E-value=0.34 Score=46.96 Aligned_cols=21 Identities=19% Similarity=0.297 Sum_probs=19.1
Q ss_pred eeEEEeecCCCCchhHHhHhh
Q 004481 532 QKLLLVGCSGSGTSTIFKQAK 552 (750)
Q Consensus 532 iKLLLLGaGESGKSTILKQMK 552 (750)
+|++++|..++|||||++++.
T Consensus 2 ~ki~iiG~~~vGKSsli~~~~ 22 (174)
T cd01871 2 IKCVVVGDGAVGKTCLLISYT 22 (174)
T ss_pred eEEEEECCCCCCHHHHHHHHh
Confidence 699999999999999998753
No 134
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=87.86 E-value=0.26 Score=47.18 Aligned_cols=22 Identities=14% Similarity=0.424 Sum_probs=17.2
Q ss_pred eEEEeecCCCCchhHHhHhhhh
Q 004481 533 KLLLVGCSGSGTSTIFKQAKIL 554 (750)
Q Consensus 533 KLLLLGaGESGKSTILKQMKIL 554 (750)
||.|.|+..+||||+++++.-.
T Consensus 1 rI~i~G~~stGKTTL~~~L~~~ 22 (163)
T PF13521_consen 1 RIVITGGPSTGKTTLIEALAAR 22 (163)
T ss_dssp -EEEE--TTSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHc
Confidence 7999999999999999998744
No 135
>PRK08233 hypothetical protein; Provisional
Probab=87.79 E-value=0.35 Score=46.22 Aligned_cols=21 Identities=19% Similarity=0.420 Sum_probs=17.5
Q ss_pred eeEEEeecCCCCchhHHhHhh
Q 004481 532 QKLLLVGCSGSGTSTIFKQAK 552 (750)
Q Consensus 532 iKLLLLGaGESGKSTILKQMK 552 (750)
.-|.+.|.+||||||+.+++.
T Consensus 4 ~iI~I~G~~GsGKtTla~~L~ 24 (182)
T PRK08233 4 KIITIAAVSGGGKTTLTERLT 24 (182)
T ss_pred eEEEEECCCCCCHHHHHHHHH
Confidence 456778999999999988764
No 136
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=87.77 E-value=0.33 Score=43.40 Aligned_cols=18 Identities=33% Similarity=0.617 Sum_probs=16.2
Q ss_pred EEEeecCCCCchhHHhHh
Q 004481 534 LLLVGCSGSGTSTIFKQA 551 (750)
Q Consensus 534 LLLLGaGESGKSTILKQM 551 (750)
|||.|+.|+||||+++.+
T Consensus 1 ill~G~~G~GKT~l~~~l 18 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARAL 18 (132)
T ss_dssp EEEESSTTSSHHHHHHHH
T ss_pred CEEECcCCCCeeHHHHHH
Confidence 799999999999998864
No 137
>cd04111 Rab39 Rab39 subfamily. Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=87.62 E-value=0.35 Score=48.65 Aligned_cols=22 Identities=27% Similarity=0.477 Sum_probs=20.1
Q ss_pred eeeEEEeecCCCCchhHHhHhh
Q 004481 531 LQKLLLVGCSGSGTSTIFKQAK 552 (750)
Q Consensus 531 ~iKLLLLGaGESGKSTILKQMK 552 (750)
++||+++|..++||||++.++.
T Consensus 2 ~~KIvvvG~~~vGKTsLi~~l~ 23 (211)
T cd04111 2 QFRLIVIGDSTVGKSSLLKRFT 23 (211)
T ss_pred ceEEEEECCCCCCHHHHHHHHH
Confidence 5899999999999999999864
No 138
>PLN03071 GTP-binding nuclear protein Ran; Provisional
Probab=87.57 E-value=0.35 Score=48.99 Aligned_cols=23 Identities=35% Similarity=0.528 Sum_probs=20.6
Q ss_pred cceeeEEEeecCCCCchhHHhHh
Q 004481 529 RTLQKLLLVGCSGSGTSTIFKQA 551 (750)
Q Consensus 529 kr~iKLLLLGaGESGKSTILKQM 551 (750)
...+||+++|..++||||++.++
T Consensus 11 ~~~~Ki~vvG~~gvGKTsli~~~ 33 (219)
T PLN03071 11 YPSFKLVIVGDGGTGKTTFVKRH 33 (219)
T ss_pred CCceEEEEECcCCCCHHHHHHHH
Confidence 45689999999999999999884
No 139
>PRK02496 adk adenylate kinase; Provisional
Probab=87.57 E-value=0.36 Score=47.09 Aligned_cols=24 Identities=21% Similarity=0.292 Sum_probs=20.2
Q ss_pred eeEEEeecCCCCchhHHhHhhhhh
Q 004481 532 QKLLLVGCSGSGTSTIFKQAKILY 555 (750)
Q Consensus 532 iKLLLLGaGESGKSTILKQMKILh 555 (750)
.|++++|+.+|||||+.+.+--.|
T Consensus 2 ~~i~i~G~pGsGKst~a~~la~~~ 25 (184)
T PRK02496 2 TRLIFLGPPGAGKGTQAVVLAEHL 25 (184)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 579999999999999999875433
No 140
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=87.50 E-value=0.36 Score=48.17 Aligned_cols=20 Identities=20% Similarity=0.380 Sum_probs=18.3
Q ss_pred eEEEeecCCCCchhHHhHhh
Q 004481 533 KLLLVGCSGSGTSTIFKQAK 552 (750)
Q Consensus 533 KLLLLGaGESGKSTILKQMK 552 (750)
.++|.|+.+|||||++|++-
T Consensus 30 ~~~ltG~Ng~GKStll~~i~ 49 (200)
T cd03280 30 VLVITGPNAGGKTVTLKTLG 49 (200)
T ss_pred EEEEECCCCCChHHHHHHHH
Confidence 39999999999999999965
No 141
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=87.34 E-value=0.36 Score=47.01 Aligned_cols=21 Identities=29% Similarity=0.487 Sum_probs=18.1
Q ss_pred EEEeecCCCCchhHHhHhhhh
Q 004481 534 LLLVGCSGSGTSTIFKQAKIL 554 (750)
Q Consensus 534 LLLLGaGESGKSTILKQMKIL 554 (750)
|+|.|.++|||||+.|++.-.
T Consensus 5 i~l~G~~gsGKst~a~~l~~~ 25 (175)
T cd00227 5 IILNGGSSAGKSSIARALQSV 25 (175)
T ss_pred EEEECCCCCCHHHHHHHHHHh
Confidence 788999999999999987543
No 142
>cd04121 Rab40 Rab40 subfamily. This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d
Probab=87.26 E-value=0.35 Score=48.24 Aligned_cols=24 Identities=38% Similarity=0.481 Sum_probs=21.4
Q ss_pred cceeeEEEeecCCCCchhHHhHhh
Q 004481 529 RTLQKLLLVGCSGSGTSTIFKQAK 552 (750)
Q Consensus 529 kr~iKLLLLGaGESGKSTILKQMK 552 (750)
...+||++||..++|||||++++.
T Consensus 4 ~~~~KivviG~~~vGKTsll~~~~ 27 (189)
T cd04121 4 DYLLKFLLVGDSDVGKGEILASLQ 27 (189)
T ss_pred CceeEEEEECCCCCCHHHHHHHHH
Confidence 356899999999999999999875
No 143
>PRK13695 putative NTPase; Provisional
Probab=87.19 E-value=0.37 Score=46.77 Aligned_cols=19 Identities=26% Similarity=0.455 Sum_probs=17.6
Q ss_pred eeEEEeecCCCCchhHHhH
Q 004481 532 QKLLLVGCSGSGTSTIFKQ 550 (750)
Q Consensus 532 iKLLLLGaGESGKSTILKQ 550 (750)
.|++|.|..++||||++++
T Consensus 1 ~~i~ltG~~G~GKTTll~~ 19 (174)
T PRK13695 1 MKIGITGPPGVGKTTLVLK 19 (174)
T ss_pred CEEEEECCCCCCHHHHHHH
Confidence 4899999999999999997
No 144
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=87.19 E-value=0.36 Score=48.70 Aligned_cols=25 Identities=24% Similarity=0.331 Sum_probs=20.4
Q ss_pred ceeeEEEeecCCCCchhHHhHhhhh
Q 004481 530 TLQKLLLVGCSGSGTSTIFKQAKIL 554 (750)
Q Consensus 530 r~iKLLLLGaGESGKSTILKQMKIL 554 (750)
.--.+.|+|..||||||++|-|-=+
T Consensus 25 ~Ge~~~l~G~nGsGKSTLl~~l~Gl 49 (236)
T cd03219 25 PGEIHGLIGPNGAGKTTLFNLISGF 49 (236)
T ss_pred CCcEEEEECCCCCCHHHHHHHHcCC
Confidence 3446899999999999999987544
No 145
>PTZ00088 adenylate kinase 1; Provisional
Probab=87.14 E-value=0.4 Score=49.85 Aligned_cols=26 Identities=23% Similarity=0.322 Sum_probs=21.4
Q ss_pred cceeeEEEeecCCCCchhHHhHhhhh
Q 004481 529 RTLQKLLLVGCSGSGTSTIFKQAKIL 554 (750)
Q Consensus 529 kr~iKLLLLGaGESGKSTILKQMKIL 554 (750)
+...||+|+|+.||||||+.+++-=.
T Consensus 4 ~~~mrIvl~G~PGsGK~T~a~~La~~ 29 (229)
T PTZ00088 4 KGPLKIVLFGAPGVGKGTFAEILSKK 29 (229)
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHH
Confidence 34578999999999999999886433
No 146
>PF13173 AAA_14: AAA domain
Probab=87.08 E-value=0.38 Score=44.60 Aligned_cols=19 Identities=37% Similarity=0.672 Sum_probs=17.0
Q ss_pred EEEeecCCCCchhHHhHhh
Q 004481 534 LLLVGCSGSGTSTIFKQAK 552 (750)
Q Consensus 534 LLLLGaGESGKSTILKQMK 552 (750)
++|.|+-++||||++||+-
T Consensus 5 ~~l~G~R~vGKTtll~~~~ 23 (128)
T PF13173_consen 5 IILTGPRGVGKTTLLKQLA 23 (128)
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 6888999999999999963
No 147
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=87.05 E-value=0.42 Score=45.37 Aligned_cols=23 Identities=35% Similarity=0.531 Sum_probs=19.2
Q ss_pred EEEeecCCCCchhHHhHhhhhhc
Q 004481 534 LLLVGCSGSGTSTIFKQAKILYK 556 (750)
Q Consensus 534 LLLLGaGESGKSTILKQMKILh~ 556 (750)
++|+|+.+|||||++++|.-.+.
T Consensus 2 i~i~GpsGsGKstl~~~L~~~~~ 24 (137)
T cd00071 2 IVLSGPSGVGKSTLLKRLLEEFD 24 (137)
T ss_pred EEEECCCCCCHHHHHHHHHhcCC
Confidence 57899999999999999865543
No 148
>PF13304 AAA_21: AAA domain; PDB: 3QKS_B 1US8_B 1F2U_B 1F2T_B 3QKT_A 1II8_B 3QKR_B 3QKU_A.
Probab=87.02 E-value=0.19 Score=47.38 Aligned_cols=21 Identities=33% Similarity=0.706 Sum_probs=0.0
Q ss_pred EEeecCCCCchhHHhHhhhhh
Q 004481 535 LLVGCSGSGTSTIFKQAKILY 555 (750)
Q Consensus 535 LLLGaGESGKSTILKQMKILh 555 (750)
+|+|+.+||||||++.+.++.
T Consensus 3 viiG~N~sGKS~il~ai~~~~ 23 (303)
T PF13304_consen 3 VIIGPNGSGKSNILEAIYFLF 23 (303)
T ss_dssp ---------------------
T ss_pred ccccccccccccccccccccc
Confidence 689999999999999998874
No 149
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=87.01 E-value=0.38 Score=47.72 Aligned_cols=26 Identities=35% Similarity=0.341 Sum_probs=21.1
Q ss_pred ceeeEEEeecCCCCchhHHhHhhhhh
Q 004481 530 TLQKLLLVGCSGSGTSTIFKQAKILY 555 (750)
Q Consensus 530 r~iKLLLLGaGESGKSTILKQMKILh 555 (750)
.--.+.|+|..||||||++|-|-=++
T Consensus 26 ~G~~~~i~G~nGsGKSTLl~~l~G~~ 51 (214)
T cd03292 26 AGEFVFLVGPSGAGKSTLLKLIYKEE 51 (214)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 34568999999999999999765544
No 150
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=86.97 E-value=0.42 Score=47.86 Aligned_cols=23 Identities=26% Similarity=0.263 Sum_probs=19.3
Q ss_pred ceeeEEEeecCCCCchhHHhHhh
Q 004481 530 TLQKLLLVGCSGSGTSTIFKQAK 552 (750)
Q Consensus 530 r~iKLLLLGaGESGKSTILKQMK 552 (750)
+..-|.+.|.++|||||++|++.
T Consensus 5 ~g~vi~I~G~sGsGKSTl~~~l~ 27 (207)
T TIGR00235 5 KGIIIGIGGGSGSGKTTVARKIY 27 (207)
T ss_pred CeEEEEEECCCCCCHHHHHHHHH
Confidence 34457899999999999999875
No 151
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=86.93 E-value=0.36 Score=42.48 Aligned_cols=25 Identities=28% Similarity=0.400 Sum_probs=20.6
Q ss_pred ceeeEEEeecCCCCchhHHhHhhhh
Q 004481 530 TLQKLLLVGCSGSGTSTIFKQAKIL 554 (750)
Q Consensus 530 r~iKLLLLGaGESGKSTILKQMKIL 554 (750)
...-+++.|+.|+||||+++.+--.
T Consensus 18 ~~~~v~i~G~~G~GKT~l~~~i~~~ 42 (151)
T cd00009 18 PPKNLLLYGPPGTGKTTLARAIANE 42 (151)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHH
Confidence 4556999999999999999986533
No 152
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=86.88 E-value=0.39 Score=47.89 Aligned_cols=26 Identities=35% Similarity=0.321 Sum_probs=20.7
Q ss_pred ceeeEEEeecCCCCchhHHhHhhhhh
Q 004481 530 TLQKLLLVGCSGSGTSTIFKQAKILY 555 (750)
Q Consensus 530 r~iKLLLLGaGESGKSTILKQMKILh 555 (750)
.--.+.|+|..||||||++|-|-=++
T Consensus 29 ~G~~~~l~G~nGsGKSTLl~~i~Gl~ 54 (218)
T cd03255 29 KGEFVAIVGPSGSGKSTLLNILGGLD 54 (218)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCc
Confidence 34568999999999999999764443
No 153
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=86.87 E-value=0.62 Score=48.94 Aligned_cols=37 Identities=32% Similarity=0.416 Sum_probs=28.1
Q ss_pred eEEEeecCCCCchhHHhHhhhhhcC------------CCCCHHHHhhhh
Q 004481 533 KLLLVGCSGSGTSTIFKQAKILYKA------------VPFSDDEHENIK 569 (750)
Q Consensus 533 KLLLLGaGESGKSTILKQMKILh~~------------~GFSeeER~~~K 569 (750)
-+-++|++||||||++.-+=.|-.| ..++++++..+|
T Consensus 33 ~vaI~GpSGSGKSTLLniig~ld~pt~G~v~i~g~d~~~l~~~~~~~~R 81 (226)
T COG1136 33 FVAIVGPSGSGKSTLLNLLGGLDKPTSGEVLINGKDLTKLSEKELAKLR 81 (226)
T ss_pred EEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEcCcCCHHHHHHHH
Confidence 4788999999999999987765544 236677777665
No 154
>PRK14531 adenylate kinase; Provisional
Probab=86.86 E-value=0.4 Score=47.19 Aligned_cols=25 Identities=28% Similarity=0.348 Sum_probs=20.5
Q ss_pred eeEEEeecCCCCchhHHhHhhhhhc
Q 004481 532 QKLLLVGCSGSGTSTIFKQAKILYK 556 (750)
Q Consensus 532 iKLLLLGaGESGKSTILKQMKILh~ 556 (750)
.+|+++|+.||||||+.+++.--|+
T Consensus 3 ~~i~i~G~pGsGKsT~~~~la~~~g 27 (183)
T PRK14531 3 QRLLFLGPPGAGKGTQAARLCAAHG 27 (183)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhC
Confidence 3799999999999999888744443
No 155
>cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=86.81 E-value=0.42 Score=48.44 Aligned_cols=23 Identities=30% Similarity=0.583 Sum_probs=20.0
Q ss_pred eEEEeecCCCCchhHHhHhhhhh
Q 004481 533 KLLLVGCSGSGTSTIFKQAKILY 555 (750)
Q Consensus 533 KLLLLGaGESGKSTILKQMKILh 555 (750)
..+|+|+.||||||+++.+-.+.
T Consensus 25 ~~~i~GpNGsGKStll~ai~~~l 47 (243)
T cd03272 25 HNVVVGRNGSGKSNFFAAIRFVL 47 (243)
T ss_pred cEEEECCCCCCHHHHHHHHHHHH
Confidence 67899999999999999986553
No 156
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=86.69 E-value=0.4 Score=47.52 Aligned_cols=25 Identities=28% Similarity=0.307 Sum_probs=20.5
Q ss_pred eeeEEEeecCCCCchhHHhHhhhhh
Q 004481 531 LQKLLLVGCSGSGTSTIFKQAKILY 555 (750)
Q Consensus 531 ~iKLLLLGaGESGKSTILKQMKILh 555 (750)
--.+.|+|+.||||||++|-|-=++
T Consensus 26 Ge~~~i~G~nGsGKSTLl~~l~Gl~ 50 (205)
T cd03226 26 GEIIALTGKNGAGKTTLAKILAGLI 50 (205)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 4478999999999999999765443
No 157
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=86.60 E-value=0.41 Score=47.78 Aligned_cols=22 Identities=32% Similarity=0.492 Sum_probs=18.7
Q ss_pred ceeeEEEeecCCCCchhHHhHh
Q 004481 530 TLQKLLLVGCSGSGTSTIFKQA 551 (750)
Q Consensus 530 r~iKLLLLGaGESGKSTILKQM 551 (750)
.--++.|+|++||||||++|-+
T Consensus 20 ~G~~~~l~G~nG~GKSTLl~~i 41 (176)
T cd03238 20 LNVLVVVTGVSGSGKSTLVNEG 41 (176)
T ss_pred CCCEEEEECCCCCCHHHHHHHH
Confidence 3456899999999999999865
No 158
>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily. RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu
Probab=86.59 E-value=0.4 Score=45.02 Aligned_cols=19 Identities=32% Similarity=0.583 Sum_probs=17.4
Q ss_pred eEEEeecCCCCchhHHhHh
Q 004481 533 KLLLVGCSGSGTSTIFKQA 551 (750)
Q Consensus 533 KLLLLGaGESGKSTILKQM 551 (750)
|++++|..++||||++.++
T Consensus 1 ki~vvG~~~~GKtsli~~~ 19 (165)
T cd04146 1 KIAVLGASGVGKSALVVRF 19 (165)
T ss_pred CEEEECCCCCcHHHHHHHH
Confidence 7999999999999999765
No 159
>cd04128 Spg1 Spg1p. Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are
Probab=86.56 E-value=0.41 Score=46.94 Aligned_cols=21 Identities=19% Similarity=0.279 Sum_probs=19.1
Q ss_pred eeEEEeecCCCCchhHHhHhh
Q 004481 532 QKLLLVGCSGSGTSTIFKQAK 552 (750)
Q Consensus 532 iKLLLLGaGESGKSTILKQMK 552 (750)
+|+++||..++||||+++++.
T Consensus 1 ~Ki~vlG~~~vGKTsLi~~~~ 21 (182)
T cd04128 1 LKIGLLGDAQIGKTSLMVKYV 21 (182)
T ss_pred CEEEEECCCCCCHHHHHHHHH
Confidence 589999999999999998863
No 160
>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight
Probab=86.55 E-value=0.43 Score=47.18 Aligned_cols=24 Identities=21% Similarity=0.328 Sum_probs=21.1
Q ss_pred cceeeEEEeecCCCCchhHHhHhh
Q 004481 529 RTLQKLLLVGCSGSGTSTIFKQAK 552 (750)
Q Consensus 529 kr~iKLLLLGaGESGKSTILKQMK 552 (750)
...+|++|+|.+++||||++.++.
T Consensus 3 ~~~~KivvvGd~~vGKTsli~~~~ 26 (182)
T cd04172 3 NVKCKIVVVGDSQCGKTALLHVFA 26 (182)
T ss_pred cceEEEEEECCCCCCHHHHHHHHH
Confidence 457899999999999999999854
No 161
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=86.49 E-value=0.42 Score=47.37 Aligned_cols=26 Identities=31% Similarity=0.517 Sum_probs=20.8
Q ss_pred ceeeEEEeecCCCCchhHHhHhhhhh
Q 004481 530 TLQKLLLVGCSGSGTSTIFKQAKILY 555 (750)
Q Consensus 530 r~iKLLLLGaGESGKSTILKQMKILh 555 (750)
.--.+.|+|..||||||++|-|-=++
T Consensus 25 ~G~~~~l~G~nGsGKSTLl~~l~G~~ 50 (213)
T cd03262 25 KGEVVVIIGPSGSGKSTLLRCINLLE 50 (213)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 34468999999999999999765443
No 162
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=86.48 E-value=0.45 Score=47.09 Aligned_cols=21 Identities=24% Similarity=0.499 Sum_probs=18.7
Q ss_pred EEEeecCCCCchhHHhHhhhh
Q 004481 534 LLLVGCSGSGTSTIFKQAKIL 554 (750)
Q Consensus 534 LLLLGaGESGKSTILKQMKIL 554 (750)
++|.|+..|||||++|++-++
T Consensus 2 ~~ltG~N~~GKst~l~~i~~~ 22 (185)
T smart00534 2 VIITGPNMGGKSTYLRQVGLI 22 (185)
T ss_pred EEEECCCCCcHHHHHHHHHHH
Confidence 689999999999999998744
No 163
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=86.42 E-value=0.42 Score=50.48 Aligned_cols=27 Identities=30% Similarity=0.418 Sum_probs=22.3
Q ss_pred ceeeEEEeecCCCCchhHHhHhhhhhc
Q 004481 530 TLQKLLLVGCSGSGTSTIFKQAKILYK 556 (750)
Q Consensus 530 r~iKLLLLGaGESGKSTILKQMKILh~ 556 (750)
+--.+.++|++||||||+++-+..|-.
T Consensus 27 ~Gevv~iiGpSGSGKSTlLRclN~LE~ 53 (240)
T COG1126 27 KGEVVVIIGPSGSGKSTLLRCLNGLEE 53 (240)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCCcC
Confidence 344688999999999999998887654
No 164
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=86.39 E-value=0.43 Score=48.13 Aligned_cols=26 Identities=27% Similarity=0.377 Sum_probs=21.0
Q ss_pred ceeeEEEeecCCCCchhHHhHhhhhh
Q 004481 530 TLQKLLLVGCSGSGTSTIFKQAKILY 555 (750)
Q Consensus 530 r~iKLLLLGaGESGKSTILKQMKILh 555 (750)
.--.+.|+|..||||||++|-|-=++
T Consensus 32 ~Ge~~~l~G~nGsGKSTLlk~l~G~~ 57 (226)
T cd03234 32 SGQVMAILGSSGSGKTTLLDAISGRV 57 (226)
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCcc
Confidence 34468999999999999999875443
No 165
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=86.38 E-value=0.43 Score=43.59 Aligned_cols=18 Identities=39% Similarity=0.613 Sum_probs=16.7
Q ss_pred EEEeecCCCCchhHHhHh
Q 004481 534 LLLVGCSGSGTSTIFKQA 551 (750)
Q Consensus 534 LLLLGaGESGKSTILKQM 551 (750)
++|.|..|+||||+++++
T Consensus 2 ~~i~G~~G~GKT~l~~~i 19 (165)
T cd01120 2 ILVFGPTGSGKTTLALQL 19 (165)
T ss_pred eeEeCCCCCCHHHHHHHH
Confidence 689999999999999886
No 166
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=86.26 E-value=0.44 Score=47.56 Aligned_cols=26 Identities=35% Similarity=0.400 Sum_probs=20.9
Q ss_pred ceeeEEEeecCCCCchhHHhHhhhhh
Q 004481 530 TLQKLLLVGCSGSGTSTIFKQAKILY 555 (750)
Q Consensus 530 r~iKLLLLGaGESGKSTILKQMKILh 555 (750)
.--.+.|+|..||||||++|-+-=++
T Consensus 28 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 53 (216)
T TIGR00960 28 KGEMVFLVGHSGAGKSTFLKLILGIE 53 (216)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 34468999999999999999765444
No 167
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=86.24 E-value=0.44 Score=44.66 Aligned_cols=21 Identities=24% Similarity=0.340 Sum_probs=18.2
Q ss_pred eeeEEEeecCCCCchhHHhHh
Q 004481 531 LQKLLLVGCSGSGTSTIFKQA 551 (750)
Q Consensus 531 ~iKLLLLGaGESGKSTILKQM 551 (750)
.-.++|+|+++|||||+++.+
T Consensus 15 ge~v~I~GpSGsGKSTLl~~l 35 (107)
T cd00820 15 KVGVLITGDSGIGKTELALEL 35 (107)
T ss_pred CEEEEEEcCCCCCHHHHHHHh
Confidence 345799999999999999985
No 168
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=86.22 E-value=0.44 Score=47.36 Aligned_cols=26 Identities=31% Similarity=0.330 Sum_probs=20.6
Q ss_pred ceeeEEEeecCCCCchhHHhHhhhhh
Q 004481 530 TLQKLLLVGCSGSGTSTIFKQAKILY 555 (750)
Q Consensus 530 r~iKLLLLGaGESGKSTILKQMKILh 555 (750)
.--.+.|+|..||||||++|-|-=++
T Consensus 27 ~G~~~~l~G~nGsGKSTLl~~i~Gl~ 52 (214)
T TIGR02673 27 KGEFLFLTGPSGAGKTTLLKLLYGAL 52 (214)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 34468999999999999999765443
No 169
>PF10497 zf-4CXXC_R1: Zinc-finger domain of monoamine-oxidase A repressor R1; InterPro: IPR018866 R1 is a transcription factor repressor that inhibits monoamine oxidase A gene expression. This domain is a four-CXXC zinc finger putative DNA-binding domain found at the C-terminal end of R1. The domain carries 12 cysteines of which four pairs are of the CXXC type [].
Probab=86.21 E-value=0.29 Score=45.70 Aligned_cols=49 Identities=29% Similarity=0.727 Sum_probs=37.9
Q ss_pred CcCceecccCCceeeeeeee------eec---CCccccccchhccCCCcC------CcccccccC
Q 004481 270 KKGSCYRCFKGNRFTEKEVC------IVC---DAKYCCNCVLRAMGSMPE------GRKCVTCIG 319 (750)
Q Consensus 270 k~~~c~~c~~~~~~~~~e~c------~vc---~~~yc~~cv~~~mg~m~e------grkc~~c~g 319 (750)
+...|+.|-.. ....+..| ..| ..+||..|+.+.+|.|++ --+|.-|.|
T Consensus 6 ~g~~CHqCrqK-t~~~~~~C~~~~~~~~C~~~~~~fC~~CL~~ryge~~~ev~~~~~W~CP~Crg 69 (105)
T PF10497_consen 6 NGKTCHQCRQK-TLDFKTICTGHWKNSSCRGCRGKFCGGCLRNRYGENVEEVLEDPNWKCPKCRG 69 (105)
T ss_pred CCCCchhhcCC-CCCCceEcCCCCCCCCCccCcceehHhHHHHHHhhhHHHHhcCCceECCCCCC
Confidence 34578888776 44566666 666 999999999999999873 356999988
No 170
>PRK00279 adk adenylate kinase; Reviewed
Probab=86.19 E-value=0.45 Score=47.92 Aligned_cols=21 Identities=33% Similarity=0.488 Sum_probs=18.2
Q ss_pred eeEEEeecCCCCchhHHhHhh
Q 004481 532 QKLLLVGCSGSGTSTIFKQAK 552 (750)
Q Consensus 532 iKLLLLGaGESGKSTILKQMK 552 (750)
.||+++|+.+|||||+.+++-
T Consensus 1 ~~I~v~G~pGsGKsT~a~~la 21 (215)
T PRK00279 1 MRLILLGPPGAGKGTQAKFIA 21 (215)
T ss_pred CEEEEECCCCCCHHHHHHHHH
Confidence 379999999999999988754
No 171
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=86.14 E-value=0.45 Score=46.96 Aligned_cols=22 Identities=27% Similarity=0.366 Sum_probs=18.6
Q ss_pred EEEeecCCCCchhHHhHhhhhh
Q 004481 534 LLLVGCSGSGTSTIFKQAKILY 555 (750)
Q Consensus 534 LLLLGaGESGKSTILKQMKILh 555 (750)
+.|.|..+|||||+.+.+.-+.
T Consensus 2 igi~G~~GsGKSTl~~~l~~~l 23 (198)
T cd02023 2 IGIAGGSGSGKTTVAEEIIEQL 23 (198)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 5789999999999999885543
No 172
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=86.08 E-value=0.51 Score=48.17 Aligned_cols=23 Identities=26% Similarity=0.492 Sum_probs=20.3
Q ss_pred eeEEEeecCCCCchhHHhHhhhh
Q 004481 532 QKLLLVGCSGSGTSTIFKQAKIL 554 (750)
Q Consensus 532 iKLLLLGaGESGKSTILKQMKIL 554 (750)
-+++|.|+.+|||||++|++-++
T Consensus 30 ~~~~itGpNg~GKStlLk~i~~~ 52 (213)
T cd03281 30 SIMVITGPNSSGKSVYLKQVALI 52 (213)
T ss_pred eEEEEECCCCCChHHHHHHHHHH
Confidence 56899999999999999998743
No 173
>PLN03118 Rab family protein; Provisional
Probab=85.96 E-value=0.49 Score=47.05 Aligned_cols=22 Identities=36% Similarity=0.511 Sum_probs=20.2
Q ss_pred ceeeEEEeecCCCCchhHHhHh
Q 004481 530 TLQKLLLVGCSGSGTSTIFKQA 551 (750)
Q Consensus 530 r~iKLLLLGaGESGKSTILKQM 551 (750)
..+||+++|..++||||+++++
T Consensus 13 ~~~kv~ivG~~~vGKTsli~~l 34 (211)
T PLN03118 13 LSFKILLIGDSGVGKSSLLVSF 34 (211)
T ss_pred cceEEEEECcCCCCHHHHHHHH
Confidence 4689999999999999999986
No 174
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=85.93 E-value=0.44 Score=47.34 Aligned_cols=23 Identities=26% Similarity=0.405 Sum_probs=20.0
Q ss_pred eEEEeecCCCCchhHHhHhhhhh
Q 004481 533 KLLLVGCSGSGTSTIFKQAKILY 555 (750)
Q Consensus 533 KLLLLGaGESGKSTILKQMKILh 555 (750)
.+.|+|..||||||++|-|-=++
T Consensus 27 ~~~i~G~nGsGKSTLl~~l~Gl~ 49 (211)
T cd03264 27 MYGLLGPNGAGKTTLMRILATLT 49 (211)
T ss_pred cEEEECCCCCCHHHHHHHHhCCC
Confidence 78999999999999999876443
No 175
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=85.93 E-value=0.52 Score=39.75 Aligned_cols=21 Identities=38% Similarity=0.493 Sum_probs=18.2
Q ss_pred EEEeecCCCCchhHHhHhhhh
Q 004481 534 LLLVGCSGSGTSTIFKQAKIL 554 (750)
Q Consensus 534 LLLLGaGESGKSTILKQMKIL 554 (750)
+.+.|..+|||||+.+++.-.
T Consensus 2 i~i~G~~gsGKst~~~~l~~~ 22 (69)
T cd02019 2 IAITGGSGSGKSTVAKKLAEQ 22 (69)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 578899999999999987655
No 176
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=85.88 E-value=0.47 Score=47.24 Aligned_cols=24 Identities=33% Similarity=0.416 Sum_probs=19.7
Q ss_pred eeeEEEeecCCCCchhHHhHhhhh
Q 004481 531 LQKLLLVGCSGSGTSTIFKQAKIL 554 (750)
Q Consensus 531 ~iKLLLLGaGESGKSTILKQMKIL 554 (750)
--.+.|+|..||||||++|-|-=+
T Consensus 26 Ge~~~i~G~nGsGKSTLl~~l~G~ 49 (213)
T cd03259 26 GEFLALLGPSGCGKTTLLRLIAGL 49 (213)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCC
Confidence 345899999999999999976543
No 177
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=85.75 E-value=0.48 Score=47.71 Aligned_cols=24 Identities=29% Similarity=0.300 Sum_probs=20.0
Q ss_pred eeeEEEeecCCCCchhHHhHhhhh
Q 004481 531 LQKLLLVGCSGSGTSTIFKQAKIL 554 (750)
Q Consensus 531 ~iKLLLLGaGESGKSTILKQMKIL 554 (750)
--.+.|+|..||||||++|-|-=+
T Consensus 26 Ge~~~l~G~nGsGKSTLl~~l~Gl 49 (232)
T cd03218 26 GEIVGLLGPNGAGKTTTFYMIVGL 49 (232)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCC
Confidence 346899999999999999987544
No 178
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=85.75 E-value=0.48 Score=47.05 Aligned_cols=25 Identities=20% Similarity=0.244 Sum_probs=20.2
Q ss_pred eeeEEEeecCCCCchhHHhHhhhhh
Q 004481 531 LQKLLLVGCSGSGTSTIFKQAKILY 555 (750)
Q Consensus 531 ~iKLLLLGaGESGKSTILKQMKILh 555 (750)
--.+.|+|..||||||++|-+-=++
T Consensus 26 G~~~~i~G~nGsGKSTLl~~l~G~~ 50 (210)
T cd03269 26 GEIFGLLGPNGAGKTTTIRMILGII 50 (210)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCC
Confidence 3458899999999999999875443
No 179
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=85.75 E-value=0.48 Score=47.05 Aligned_cols=25 Identities=28% Similarity=0.337 Sum_probs=20.2
Q ss_pred eeeEEEeecCCCCchhHHhHhhhhh
Q 004481 531 LQKLLLVGCSGSGTSTIFKQAKILY 555 (750)
Q Consensus 531 ~iKLLLLGaGESGKSTILKQMKILh 555 (750)
--.+.|+|..||||||++|-+-=++
T Consensus 26 Ge~~~l~G~nGsGKSTLl~~l~G~~ 50 (213)
T cd03301 26 GEFVVLLGPSGCGKTTTLRMIAGLE 50 (213)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCC
Confidence 3458999999999999999765443
No 180
>cd04144 Ras2 Ras2 subfamily. The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=85.74 E-value=0.48 Score=46.26 Aligned_cols=20 Identities=30% Similarity=0.468 Sum_probs=18.4
Q ss_pred eEEEeecCCCCchhHHhHhh
Q 004481 533 KLLLVGCSGSGTSTIFKQAK 552 (750)
Q Consensus 533 KLLLLGaGESGKSTILKQMK 552 (750)
|++++|..++|||||++++.
T Consensus 1 ki~ivG~~~vGKTsli~~l~ 20 (190)
T cd04144 1 KLVVLGDGGVGKTALTIQLC 20 (190)
T ss_pred CEEEECCCCCCHHHHHHHHH
Confidence 79999999999999998875
No 181
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=85.68 E-value=0.49 Score=47.21 Aligned_cols=25 Identities=24% Similarity=0.262 Sum_probs=20.5
Q ss_pred eeeEEEeecCCCCchhHHhHhhhhh
Q 004481 531 LQKLLLVGCSGSGTSTIFKQAKILY 555 (750)
Q Consensus 531 ~iKLLLLGaGESGKSTILKQMKILh 555 (750)
--.+.|+|..||||||++|-+-=++
T Consensus 31 Ge~~~i~G~nGsGKSTLl~~l~Gl~ 55 (218)
T cd03266 31 GEVTGLLGPNGAGKTTTLRMLAGLL 55 (218)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCc
Confidence 3468999999999999999765443
No 182
>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans. NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.
Probab=85.60 E-value=0.52 Score=44.05 Aligned_cols=20 Identities=20% Similarity=0.488 Sum_probs=18.4
Q ss_pred eEEEeecCCCCchhHHhHhh
Q 004481 533 KLLLVGCSGSGTSTIFKQAK 552 (750)
Q Consensus 533 KLLLLGaGESGKSTILKQMK 552 (750)
+|+|+|..++||||+++++.
T Consensus 2 ~i~~~G~~~~GKssli~~l~ 21 (168)
T cd01897 2 TLVIAGYPNVGKSSLVNKLT 21 (168)
T ss_pred eEEEEcCCCCCHHHHHHHHh
Confidence 78999999999999999864
No 183
>cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends. They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini.
Probab=85.59 E-value=0.41 Score=48.25 Aligned_cols=24 Identities=38% Similarity=0.643 Sum_probs=20.7
Q ss_pred eEEEeecCCCCchhHHhHhh-hhhc
Q 004481 533 KLLLVGCSGSGTSTIFKQAK-ILYK 556 (750)
Q Consensus 533 KLLLLGaGESGKSTILKQMK-ILh~ 556 (750)
.+.|+|+.|||||||+|-+. .||+
T Consensus 30 ~~~i~G~NGsGKSTll~~i~~~l~g 54 (213)
T cd03279 30 LFLICGPTGAGKSTILDAITYALYG 54 (213)
T ss_pred EEEEECCCCCCHHHHHHHheeeEec
Confidence 57899999999999999988 4555
No 184
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=85.54 E-value=0.5 Score=47.39 Aligned_cols=25 Identities=28% Similarity=0.352 Sum_probs=20.3
Q ss_pred eeeEEEeecCCCCchhHHhHhhhhh
Q 004481 531 LQKLLLVGCSGSGTSTIFKQAKILY 555 (750)
Q Consensus 531 ~iKLLLLGaGESGKSTILKQMKILh 555 (750)
--.+.|+|..||||||++|-|-=++
T Consensus 26 Ge~~~i~G~nGsGKSTLl~~i~G~~ 50 (220)
T cd03265 26 GEIFGLLGPNGAGKTTTIKMLTTLL 50 (220)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3468899999999999999765443
No 185
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=85.54 E-value=0.5 Score=47.63 Aligned_cols=26 Identities=23% Similarity=0.296 Sum_probs=21.1
Q ss_pred ceeeEEEeecCCCCchhHHhHhhhhh
Q 004481 530 TLQKLLLVGCSGSGTSTIFKQAKILY 555 (750)
Q Consensus 530 r~iKLLLLGaGESGKSTILKQMKILh 555 (750)
.--.+.|+|..||||||++|-|-=++
T Consensus 25 ~Ge~~~l~G~nGsGKSTLl~~l~G~~ 50 (230)
T TIGR03410 25 KGEVTCVLGRNGVGKTTLLKTLMGLL 50 (230)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 45578999999999999999765443
No 186
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=85.54 E-value=0.41 Score=51.87 Aligned_cols=30 Identities=27% Similarity=0.347 Sum_probs=24.1
Q ss_pred chhHHHhcceeeEEEeecCCCCchhHHhHh
Q 004481 522 VPDYIERRTLQKLLLVGCSGSGTSTIFKQA 551 (750)
Q Consensus 522 Lqdk~~~kr~iKLLLLGaGESGKSTILKQM 551 (750)
++...+.+...-|=|+|..||||||+++.+
T Consensus 95 ~r~~~~~~~~~~v~l~G~pGsGKTTLl~~l 124 (290)
T PRK10463 95 NRARFAARKQLVLNLVSSPGSGKTTLLTET 124 (290)
T ss_pred HHHHHHhcCCeEEEEECCCCCCHHHHHHHH
Confidence 334556677888999999999999999754
No 187
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=85.53 E-value=0.51 Score=46.16 Aligned_cols=26 Identities=27% Similarity=0.350 Sum_probs=21.2
Q ss_pred ceeeEEEeecCCCCchhHHhHhhhhh
Q 004481 530 TLQKLLLVGCSGSGTSTIFKQAKILY 555 (750)
Q Consensus 530 r~iKLLLLGaGESGKSTILKQMKILh 555 (750)
.--.++|+|..||||||++|-+-=++
T Consensus 24 ~G~~~~l~G~nGsGKStLl~~i~G~~ 49 (180)
T cd03214 24 AGEIVGILGPNGAGKSTLLKTLAGLL 49 (180)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 44578999999999999999765444
No 188
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=85.51 E-value=0.51 Score=47.76 Aligned_cols=25 Identities=28% Similarity=0.226 Sum_probs=20.4
Q ss_pred ceeeEEEeecCCCCchhHHhHhhhh
Q 004481 530 TLQKLLLVGCSGSGTSTIFKQAKIL 554 (750)
Q Consensus 530 r~iKLLLLGaGESGKSTILKQMKIL 554 (750)
.--.+.|+|..||||||++|-+-=+
T Consensus 25 ~Ge~~~i~G~nGsGKSTLl~~l~Gl 49 (243)
T TIGR01978 25 KGEIHAIMGPNGSGKSTLSKTIAGH 49 (243)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3456899999999999999976543
No 189
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=85.48 E-value=0.51 Score=47.18 Aligned_cols=24 Identities=38% Similarity=0.447 Sum_probs=19.7
Q ss_pred eeeEEEeecCCCCchhHHhHhhhh
Q 004481 531 LQKLLLVGCSGSGTSTIFKQAKIL 554 (750)
Q Consensus 531 ~iKLLLLGaGESGKSTILKQMKIL 554 (750)
--.+.|+|+.||||||++|-+-=+
T Consensus 31 G~~~~i~G~nGsGKSTLl~~i~G~ 54 (221)
T TIGR02211 31 GEIVAIVGSSGSGKSTLLHLLGGL 54 (221)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCC
Confidence 446899999999999999976433
No 190
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=85.41 E-value=0.52 Score=45.92 Aligned_cols=25 Identities=36% Similarity=0.398 Sum_probs=20.5
Q ss_pred eeeEEEeecCCCCchhHHhHhhhhh
Q 004481 531 LQKLLLVGCSGSGTSTIFKQAKILY 555 (750)
Q Consensus 531 ~iKLLLLGaGESGKSTILKQMKILh 555 (750)
--.+.|+|..||||||++|-+-=++
T Consensus 28 Ge~~~i~G~nGsGKStLl~~l~G~~ 52 (178)
T cd03247 28 GEKIALLGRSGSGKSTLLQLLTGDL 52 (178)
T ss_pred CCEEEEECCCCCCHHHHHHHHhccC
Confidence 3458999999999999999875444
No 191
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=85.29 E-value=0.66 Score=55.79 Aligned_cols=29 Identities=45% Similarity=0.543 Sum_probs=25.8
Q ss_pred cceeeEEEeecCCCCchhHHhHhhhhhcC
Q 004481 529 RTLQKLLLVGCSGSGTSTIFKQAKILYKA 557 (750)
Q Consensus 529 kr~iKLLLLGaGESGKSTILKQMKILh~~ 557 (750)
+..-++.++|.+||||||++|-|.=+|.|
T Consensus 497 ~~Ge~vaIvG~SGsGKSTL~KLL~gly~p 525 (709)
T COG2274 497 PPGEKVAIVGRSGSGKSTLLKLLLGLYKP 525 (709)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCCC
Confidence 45668999999999999999999988886
No 192
>PRK04213 GTP-binding protein; Provisional
Probab=85.25 E-value=0.55 Score=45.86 Aligned_cols=23 Identities=26% Similarity=0.469 Sum_probs=20.6
Q ss_pred ceeeEEEeecCCCCchhHHhHhh
Q 004481 530 TLQKLLLVGCSGSGTSTIFKQAK 552 (750)
Q Consensus 530 r~iKLLLLGaGESGKSTILKQMK 552 (750)
..+|++++|..++|||||++.+.
T Consensus 8 ~~~~i~i~G~~~~GKSsLin~l~ 30 (201)
T PRK04213 8 RKPEIVFVGRSNVGKSTLVRELT 30 (201)
T ss_pred CCCEEEEECCCCCCHHHHHHHHh
Confidence 46899999999999999999873
No 193
>PLN03110 Rab GTPase; Provisional
Probab=85.24 E-value=0.56 Score=47.28 Aligned_cols=22 Identities=41% Similarity=0.611 Sum_probs=20.2
Q ss_pred ceeeEEEeecCCCCchhHHhHh
Q 004481 530 TLQKLLLVGCSGSGTSTIFKQA 551 (750)
Q Consensus 530 r~iKLLLLGaGESGKSTILKQM 551 (750)
..+||+++|..++||||++.++
T Consensus 11 ~~~Ki~ivG~~~vGKStLi~~l 32 (216)
T PLN03110 11 YLFKIVLIGDSGVGKSNILSRF 32 (216)
T ss_pred ceeEEEEECCCCCCHHHHHHHH
Confidence 5689999999999999999886
No 194
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=85.23 E-value=0.52 Score=48.60 Aligned_cols=27 Identities=30% Similarity=0.326 Sum_probs=21.9
Q ss_pred cceeeEEEeecCCCCchhHHhHhhhhh
Q 004481 529 RTLQKLLLVGCSGSGTSTIFKQAKILY 555 (750)
Q Consensus 529 kr~iKLLLLGaGESGKSTILKQMKILh 555 (750)
+.--.+.|+|+.||||||++|-+-=++
T Consensus 30 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 56 (258)
T PRK11701 30 YPGEVLGIVGESGSGKTTLLNALSARL 56 (258)
T ss_pred eCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 345578999999999999999866444
No 195
>cd04104 p47_IIGP_like p47 (47-kDa) family. The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei
Probab=85.22 E-value=0.55 Score=46.67 Aligned_cols=21 Identities=24% Similarity=0.487 Sum_probs=19.5
Q ss_pred eeEEEeecCCCCchhHHhHhh
Q 004481 532 QKLLLVGCSGSGTSTIFKQAK 552 (750)
Q Consensus 532 iKLLLLGaGESGKSTILKQMK 552 (750)
+|+.++|.+++||||+++.+.
T Consensus 2 ~kI~i~G~~g~GKSSLin~L~ 22 (197)
T cd04104 2 LNIAVTGESGAGKSSFINALR 22 (197)
T ss_pred eEEEEECCCCCCHHHHHHHHh
Confidence 689999999999999999864
No 196
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=85.19 E-value=0.54 Score=46.40 Aligned_cols=26 Identities=35% Similarity=0.456 Sum_probs=21.0
Q ss_pred eeeEEEeecCCCCchhHHhHhhhhhc
Q 004481 531 LQKLLLVGCSGSGTSTIFKQAKILYK 556 (750)
Q Consensus 531 ~iKLLLLGaGESGKSTILKQMKILh~ 556 (750)
--.+.|+|..||||||++|-|-=++.
T Consensus 24 Ge~~~i~G~nGsGKSTLl~~l~G~~~ 49 (206)
T TIGR03608 24 GKMYAIIGESGSGKSTLLNIIGLLEK 49 (206)
T ss_pred CcEEEEECCCCCCHHHHHHHHhcCCC
Confidence 34689999999999999997764443
No 197
>cd04143 Rhes_like Rhes_like subfamily. This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l
Probab=85.19 E-value=0.51 Score=49.21 Aligned_cols=21 Identities=19% Similarity=0.422 Sum_probs=19.3
Q ss_pred eeEEEeecCCCCchhHHhHhh
Q 004481 532 QKLLLVGCSGSGTSTIFKQAK 552 (750)
Q Consensus 532 iKLLLLGaGESGKSTILKQMK 552 (750)
+||++||.+++|||||++++.
T Consensus 1 ~KVvvlG~~gvGKTSLi~r~~ 21 (247)
T cd04143 1 YRMVVLGASKVGKTAIVSRFL 21 (247)
T ss_pred CEEEEECcCCCCHHHHHHHHH
Confidence 589999999999999999874
No 198
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=85.15 E-value=0.51 Score=47.65 Aligned_cols=27 Identities=26% Similarity=0.348 Sum_probs=21.4
Q ss_pred ceeeEEEeecCCCCchhHHhHhhhhhc
Q 004481 530 TLQKLLLVGCSGSGTSTIFKQAKILYK 556 (750)
Q Consensus 530 r~iKLLLLGaGESGKSTILKQMKILh~ 556 (750)
.--.+.|+|..||||||++|-|-=++.
T Consensus 30 ~Ge~~~l~G~nGsGKSTLl~~l~G~~~ 56 (233)
T cd03258 30 KGEIFGIIGRSGAGKSTLIRCINGLER 56 (233)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 344689999999999999998754443
No 199
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=85.14 E-value=0.53 Score=46.86 Aligned_cols=26 Identities=35% Similarity=0.399 Sum_probs=20.6
Q ss_pred ceeeEEEeecCCCCchhHHhHhhhhh
Q 004481 530 TLQKLLLVGCSGSGTSTIFKQAKILY 555 (750)
Q Consensus 530 r~iKLLLLGaGESGKSTILKQMKILh 555 (750)
.--.+.|+|..||||||++|-+-=++
T Consensus 24 ~Ge~~~l~G~nGsGKSTLl~~l~G~~ 49 (213)
T cd03235 24 PGEFLAIVGPNGAGKSTLLKAILGLL 49 (213)
T ss_pred CCCEEEEECCCCCCHHHHHHHHcCCC
Confidence 34468999999999999999764443
No 200
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=85.13 E-value=0.53 Score=47.72 Aligned_cols=26 Identities=27% Similarity=0.399 Sum_probs=20.9
Q ss_pred ceeeEEEeecCCCCchhHHhHhhhhh
Q 004481 530 TLQKLLLVGCSGSGTSTIFKQAKILY 555 (750)
Q Consensus 530 r~iKLLLLGaGESGKSTILKQMKILh 555 (750)
.--.+.|+|..||||||++|-|-=++
T Consensus 27 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 52 (243)
T TIGR02315 27 PGEFVAIIGPSGAGKSTLLRCINRLV 52 (243)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCc
Confidence 34568999999999999999765444
No 201
>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.
Probab=85.12 E-value=0.55 Score=44.90 Aligned_cols=19 Identities=21% Similarity=0.665 Sum_probs=17.6
Q ss_pred EEEeecCCCCchhHHhHhh
Q 004481 534 LLLVGCSGSGTSTIFKQAK 552 (750)
Q Consensus 534 LLLLGaGESGKSTILKQMK 552 (750)
|+|+|.+++||||+++++.
T Consensus 2 i~ivG~~~vGKTsli~~~~ 20 (164)
T cd04162 2 ILVLGLDGAGKTSLLHSLS 20 (164)
T ss_pred EEEECCCCCCHHHHHHHHh
Confidence 7999999999999999975
No 202
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=85.11 E-value=0.54 Score=46.93 Aligned_cols=25 Identities=28% Similarity=0.408 Sum_probs=20.4
Q ss_pred ceeeEEEeecCCCCchhHHhHhhhh
Q 004481 530 TLQKLLLVGCSGSGTSTIFKQAKIL 554 (750)
Q Consensus 530 r~iKLLLLGaGESGKSTILKQMKIL 554 (750)
.--.+.|+|..||||||++|-+--+
T Consensus 25 ~Ge~~~i~G~nGsGKSTLl~~l~Gl 49 (222)
T cd03224 25 EGEIVALLGRNGAGKTTLLKTIMGL 49 (222)
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCC
Confidence 3456899999999999999976544
No 203
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=85.09 E-value=0.54 Score=47.64 Aligned_cols=25 Identities=36% Similarity=0.437 Sum_probs=20.4
Q ss_pred eeeEEEeecCCCCchhHHhHhhhhh
Q 004481 531 LQKLLLVGCSGSGTSTIFKQAKILY 555 (750)
Q Consensus 531 ~iKLLLLGaGESGKSTILKQMKILh 555 (750)
--.+.|+|..||||||++|-+-=++
T Consensus 26 Ge~~~l~G~nGsGKSTLl~~l~G~~ 50 (235)
T cd03261 26 GEILAIIGPSGSGKSTLLRLIVGLL 50 (235)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3458999999999999999765444
No 204
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=85.08 E-value=0.52 Score=47.66 Aligned_cols=23 Identities=22% Similarity=0.341 Sum_probs=19.3
Q ss_pred eeEEEeecCCCCchhHHhHhhhh
Q 004481 532 QKLLLVGCSGSGTSTIFKQAKIL 554 (750)
Q Consensus 532 iKLLLLGaGESGKSTILKQMKIL 554 (750)
-.+.|+|..||||||++|-+--+
T Consensus 14 e~~~l~G~NGsGKSTLlk~i~Gl 36 (213)
T PRK15177 14 EHIGILAAPGSGKTTLTRLLCGL 36 (213)
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 45789999999999999976544
No 205
>PRK05480 uridine/cytidine kinase; Provisional
Probab=85.06 E-value=0.58 Score=46.64 Aligned_cols=23 Identities=26% Similarity=0.283 Sum_probs=19.8
Q ss_pred ceeeEEEeecCCCCchhHHhHhh
Q 004481 530 TLQKLLLVGCSGSGTSTIFKQAK 552 (750)
Q Consensus 530 r~iKLLLLGaGESGKSTILKQMK 552 (750)
+...|.|.|.++|||||+.+.+.
T Consensus 5 ~~~iI~I~G~sGsGKTTl~~~l~ 27 (209)
T PRK05480 5 KPIIIGIAGGSGSGKTTVASTIY 27 (209)
T ss_pred CCEEEEEECCCCCCHHHHHHHHH
Confidence 45678999999999999988764
No 206
>PF13479 AAA_24: AAA domain
Probab=84.84 E-value=0.56 Score=47.60 Aligned_cols=23 Identities=30% Similarity=0.476 Sum_probs=21.2
Q ss_pred cceeeEEEeecCCCCchhHHhHh
Q 004481 529 RTLQKLLLVGCSGSGTSTIFKQA 551 (750)
Q Consensus 529 kr~iKLLLLGaGESGKSTILKQM 551 (750)
|+.+|+||.|.+++||||+.+.+
T Consensus 1 ~~~~~~lIyG~~G~GKTt~a~~~ 23 (213)
T PF13479_consen 1 KKPIKILIYGPPGSGKTTLAASL 23 (213)
T ss_pred CCceEEEEECCCCCCHHHHHHhC
Confidence 46789999999999999999998
No 207
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=84.79 E-value=0.57 Score=46.48 Aligned_cols=24 Identities=38% Similarity=0.495 Sum_probs=19.5
Q ss_pred eeeEEEeecCCCCchhHHhHhhhh
Q 004481 531 LQKLLLVGCSGSGTSTIFKQAKIL 554 (750)
Q Consensus 531 ~iKLLLLGaGESGKSTILKQMKIL 554 (750)
--.+.|+|..||||||++|-|-=+
T Consensus 27 G~~~~l~G~nGsGKSTLl~~l~G~ 50 (211)
T cd03225 27 GEFVLIVGPNGSGKSTLLRLLNGL 50 (211)
T ss_pred CcEEEEECCCCCCHHHHHHHHhcC
Confidence 345889999999999999976433
No 208
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=84.78 E-value=0.65 Score=49.59 Aligned_cols=38 Identities=21% Similarity=0.393 Sum_probs=27.7
Q ss_pred eEEEeecCCCCchhHHhHhhhhhcC------------CCCCHHHHhhhhH
Q 004481 533 KLLLVGCSGSGTSTIFKQAKILYKA------------VPFSDDEHENIKL 570 (750)
Q Consensus 533 KLLLLGaGESGKSTILKQMKILh~~------------~GFSeeER~~~K~ 570 (750)
-+-|+|.+||||||++|-+--+..+ .+....|+..||.
T Consensus 32 ~VaiIG~SGaGKSTLLR~lngl~d~t~G~i~~~g~~i~~~~~k~lr~~r~ 81 (258)
T COG3638 32 MVAIIGPSGAGKSTLLRSLNGLVDPTSGEILFNGVQITKLKGKELRKLRR 81 (258)
T ss_pred EEEEECCCCCcHHHHHHHHhcccCCCcceEEecccchhccchHHHHHHHH
Confidence 4789999999999999987755443 2345566666663
No 209
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=84.75 E-value=0.57 Score=47.50 Aligned_cols=23 Identities=39% Similarity=0.554 Sum_probs=19.3
Q ss_pred eeEEEeecCCCCchhHHhHhhhh
Q 004481 532 QKLLLVGCSGSGTSTIFKQAKIL 554 (750)
Q Consensus 532 iKLLLLGaGESGKSTILKQMKIL 554 (750)
-.+.|+|+.||||||++|-+-=+
T Consensus 36 e~~~l~G~nGsGKSTLl~~l~Gl 58 (233)
T PRK11629 36 EMMAIVGSSGSGKSTLLHLLGGL 58 (233)
T ss_pred cEEEEECCCCCCHHHHHHHHhcC
Confidence 46899999999999999976433
No 210
>cd04131 Rnd Rnd subfamily. The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=84.75 E-value=0.6 Score=45.73 Aligned_cols=21 Identities=19% Similarity=0.366 Sum_probs=19.2
Q ss_pred eeEEEeecCCCCchhHHhHhh
Q 004481 532 QKLLLVGCSGSGTSTIFKQAK 552 (750)
Q Consensus 532 iKLLLLGaGESGKSTILKQMK 552 (750)
+||+|||.+++|||+++.++.
T Consensus 2 ~Kiv~vG~~~vGKTsli~~~~ 22 (178)
T cd04131 2 CKIVVVGDVQCGKTALLQVFA 22 (178)
T ss_pred eEEEEECCCCCCHHHHHHHHH
Confidence 699999999999999999864
No 211
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=84.73 E-value=0.54 Score=47.48 Aligned_cols=26 Identities=31% Similarity=0.382 Sum_probs=21.0
Q ss_pred ceeeEEEeecCCCCchhHHhHhhhhh
Q 004481 530 TLQKLLLVGCSGSGTSTIFKQAKILY 555 (750)
Q Consensus 530 r~iKLLLLGaGESGKSTILKQMKILh 555 (750)
.--.+.|+|..||||||++|-|--++
T Consensus 26 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 51 (241)
T cd03256 26 PGEFVALIGPSGAGKSTLLRCLNGLV 51 (241)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCc
Confidence 34468999999999999999875444
No 212
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=84.70 E-value=0.58 Score=47.02 Aligned_cols=27 Identities=26% Similarity=0.409 Sum_probs=21.6
Q ss_pred ceeeEEEeecCCCCchhHHhHhhhhhc
Q 004481 530 TLQKLLLVGCSGSGTSTIFKQAKILYK 556 (750)
Q Consensus 530 r~iKLLLLGaGESGKSTILKQMKILh~ 556 (750)
.--.+.|+|..||||||++|-|-=++.
T Consensus 36 ~Ge~~~i~G~nGsGKSTLl~~i~G~~~ 62 (214)
T PRK13543 36 AGEALLVQGDNGAGKTTLLRVLAGLLH 62 (214)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCCC
Confidence 344689999999999999998765543
No 213
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=84.69 E-value=0.53 Score=50.31 Aligned_cols=21 Identities=38% Similarity=0.430 Sum_probs=17.6
Q ss_pred EEEeecCCCCchhHHhHhhhh
Q 004481 534 LLLVGCSGSGTSTIFKQAKIL 554 (750)
Q Consensus 534 LLLLGaGESGKSTILKQMKIL 554 (750)
+-|||+.||||||++|-|-=+
T Consensus 31 ~~iiGpNG~GKSTLLk~l~g~ 51 (258)
T COG1120 31 TGILGPNGSGKSTLLKCLAGL 51 (258)
T ss_pred EEEECCCCCCHHHHHHHHhcc
Confidence 578999999999999976443
No 214
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=84.66 E-value=0.57 Score=47.77 Aligned_cols=25 Identities=28% Similarity=0.525 Sum_probs=20.3
Q ss_pred ceeeEEEeecCCCCchhHHhHhhhh
Q 004481 530 TLQKLLLVGCSGSGTSTIFKQAKIL 554 (750)
Q Consensus 530 r~iKLLLLGaGESGKSTILKQMKIL 554 (750)
.--.+.|+|..||||||++|-+-=+
T Consensus 28 ~Ge~~~i~G~nGsGKSTLl~~l~G~ 52 (250)
T PRK11264 28 PGEVVAIIGPSGSGKTTLLRCINLL 52 (250)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 3446899999999999999976544
No 215
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=84.66 E-value=0.57 Score=47.96 Aligned_cols=23 Identities=35% Similarity=0.426 Sum_probs=19.6
Q ss_pred ceeeEEEeecCCCCchhHHhHhh
Q 004481 530 TLQKLLLVGCSGSGTSTIFKQAK 552 (750)
Q Consensus 530 r~iKLLLLGaGESGKSTILKQMK 552 (750)
.--.+.|+|..||||||++|-|-
T Consensus 31 ~Ge~~~i~G~nGsGKSTLl~~l~ 53 (253)
T PRK14242 31 QNQVTALIGPSGCGKSTFLRCLN 53 (253)
T ss_pred CCCEEEEECCCCCCHHHHHHHHH
Confidence 34468999999999999999875
No 216
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=84.62 E-value=0.56 Score=45.96 Aligned_cols=24 Identities=33% Similarity=0.538 Sum_probs=19.7
Q ss_pred eeEEEeecCCCCchhHHhHhhhhh
Q 004481 532 QKLLLVGCSGSGTSTIFKQAKILY 555 (750)
Q Consensus 532 iKLLLLGaGESGKSTILKQMKILh 555 (750)
-.+.|+|..||||||++|-+-=++
T Consensus 19 e~~~i~G~nGsGKSTLl~~i~G~~ 42 (190)
T TIGR01166 19 EVLALLGANGAGKSTLLLHLNGLL 42 (190)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 358999999999999999765444
No 217
>cd01898 Obg Obg subfamily. The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.
Probab=84.61 E-value=0.58 Score=43.66 Aligned_cols=20 Identities=30% Similarity=0.463 Sum_probs=18.1
Q ss_pred eEEEeecCCCCchhHHhHhh
Q 004481 533 KLLLVGCSGSGTSTIFKQAK 552 (750)
Q Consensus 533 KLLLLGaGESGKSTILKQMK 552 (750)
.+.|+|..++||||+++.+.
T Consensus 2 ~v~ivG~~~~GKStl~~~l~ 21 (170)
T cd01898 2 DVGLVGLPNAGKSTLLSAIS 21 (170)
T ss_pred CeEEECCCCCCHHHHHHHHh
Confidence 37899999999999999975
No 218
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=84.60 E-value=0.56 Score=46.85 Aligned_cols=24 Identities=25% Similarity=0.318 Sum_probs=19.9
Q ss_pred eeEEEeecCCCCchhHHhHhhhhh
Q 004481 532 QKLLLVGCSGSGTSTIFKQAKILY 555 (750)
Q Consensus 532 iKLLLLGaGESGKSTILKQMKILh 555 (750)
-.+.|+|..||||||++|-+-=++
T Consensus 29 e~~~i~G~nGsGKSTLl~~l~Gl~ 52 (220)
T cd03263 29 EIFGLLGHNGAGKTTTLKMLTGEL 52 (220)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC
Confidence 358999999999999999875444
No 219
>cd04148 RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra
Probab=84.56 E-value=0.57 Score=47.54 Aligned_cols=21 Identities=24% Similarity=0.531 Sum_probs=19.3
Q ss_pred eeEEEeecCCCCchhHHhHhh
Q 004481 532 QKLLLVGCSGSGTSTIFKQAK 552 (750)
Q Consensus 532 iKLLLLGaGESGKSTILKQMK 552 (750)
+||+|+|..++||||++.++.
T Consensus 1 ~KI~lvG~~gvGKTsLi~~~~ 21 (221)
T cd04148 1 YRVVMLGSPGVGKSSLASQFT 21 (221)
T ss_pred CEEEEECCCCCcHHHHHHHHh
Confidence 589999999999999999873
No 220
>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]
Probab=84.55 E-value=1.9 Score=45.10 Aligned_cols=24 Identities=38% Similarity=0.623 Sum_probs=21.6
Q ss_pred EEEeecCCCCchhHHhHhhhhhcC
Q 004481 534 LLLVGCSGSGTSTIFKQAKILYKA 557 (750)
Q Consensus 534 LLLLGaGESGKSTILKQMKILh~~ 557 (750)
|-++|++||||||+++-+.+|..|
T Consensus 35 isIIGsSGSGKSTfLRCiN~LE~P 58 (256)
T COG4598 35 ISIIGSSGSGKSTFLRCINFLEKP 58 (256)
T ss_pred EEEecCCCCchhHHHHHHHhhcCC
Confidence 567899999999999999999876
No 221
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=84.49 E-value=0.6 Score=46.32 Aligned_cols=26 Identities=31% Similarity=0.363 Sum_probs=21.2
Q ss_pred ceeeEEEeecCCCCchhHHhHhhhhh
Q 004481 530 TLQKLLLVGCSGSGTSTIFKQAKILY 555 (750)
Q Consensus 530 r~iKLLLLGaGESGKSTILKQMKILh 555 (750)
+--.+.|+|+.||||||++|-+--++
T Consensus 26 ~Ge~~~l~G~nGsGKSTLl~~i~G~~ 51 (200)
T PRK13540 26 AGGLLHLKGSNGAGKTTLLKLIAGLL 51 (200)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 45578999999999999999765444
No 222
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=84.49 E-value=0.6 Score=46.83 Aligned_cols=25 Identities=36% Similarity=0.361 Sum_probs=20.1
Q ss_pred eeeEEEeecCCCCchhHHhHhhhhh
Q 004481 531 LQKLLLVGCSGSGTSTIFKQAKILY 555 (750)
Q Consensus 531 ~iKLLLLGaGESGKSTILKQMKILh 555 (750)
--.+.|+|..||||||++|-+-=++
T Consensus 30 G~~~~i~G~nGsGKSTLl~~l~Gl~ 54 (220)
T cd03293 30 GEFVALVGPSGCGKSTLLRIIAGLE 54 (220)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCC
Confidence 3458999999999999999765443
No 223
>TIGR03238 dnd_assoc_3 dnd system-associated protein 3. cereus E33L, Hahella chejuensis KCTC 2396, Pseudoalteromonas haloplanktis TAC12, and Escherichia coli B7A.
Probab=84.44 E-value=0.8 Score=53.03 Aligned_cols=21 Identities=38% Similarity=0.629 Sum_probs=18.0
Q ss_pred ceeeEEEeecCCCCchhHHhH
Q 004481 530 TLQKLLLVGCSGSGTSTIFKQ 550 (750)
Q Consensus 530 r~iKLLLLGaGESGKSTILKQ 550 (750)
..--+.|+|++||||||+++.
T Consensus 31 ~GEiv~L~G~SGsGKSTLLr~ 51 (504)
T TIGR03238 31 SSSLLFLCGSSGDGKSEILAE 51 (504)
T ss_pred CCCEEEEECCCCCCHHHHHhc
Confidence 445689999999999999993
No 224
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=84.44 E-value=0.6 Score=46.70 Aligned_cols=26 Identities=42% Similarity=0.387 Sum_probs=20.8
Q ss_pred ceeeEEEeecCCCCchhHHhHhhhhh
Q 004481 530 TLQKLLLVGCSGSGTSTIFKQAKILY 555 (750)
Q Consensus 530 r~iKLLLLGaGESGKSTILKQMKILh 555 (750)
.--.+.|+|..||||||++|-+-=++
T Consensus 30 ~Ge~~~i~G~nGsGKSTLl~~l~G~~ 55 (228)
T cd03257 30 KGETLGLVGESGSGKSTLARAILGLL 55 (228)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 34568999999999999999765443
No 225
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=84.44 E-value=0.59 Score=47.28 Aligned_cols=25 Identities=36% Similarity=0.383 Sum_probs=20.6
Q ss_pred ceeeEEEeecCCCCchhHHhHhhhh
Q 004481 530 TLQKLLLVGCSGSGTSTIFKQAKIL 554 (750)
Q Consensus 530 r~iKLLLLGaGESGKSTILKQMKIL 554 (750)
.--.+.|+|..||||||++|-+-=+
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~Gl 51 (237)
T cd03252 27 PGEVVGIVGRSGSGKSTLTKLIQRF 51 (237)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 4456899999999999999976533
No 226
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=84.44 E-value=0.61 Score=45.87 Aligned_cols=21 Identities=43% Similarity=0.608 Sum_probs=18.8
Q ss_pred eeEEEeecCCCCchhHHhHhh
Q 004481 532 QKLLLVGCSGSGTSTIFKQAK 552 (750)
Q Consensus 532 iKLLLLGaGESGKSTILKQMK 552 (750)
.+|+|+|..+|||||+.+.+-
T Consensus 5 ~~I~liG~~GaGKStl~~~La 25 (172)
T PRK05057 5 RNIFLVGPMGAGKSTIGRQLA 25 (172)
T ss_pred CEEEEECCCCcCHHHHHHHHH
Confidence 369999999999999999874
No 227
>KOG1818 consensus Membrane trafficking and cell signaling protein HRS, contains VHS and FYVE domains [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=84.40 E-value=0.37 Score=56.95 Aligned_cols=47 Identities=28% Similarity=0.637 Sum_probs=40.1
Q ss_pred CceecccCC-ceeeeeeeeeecCCccccccc-----hhccCCCcCCccccccc
Q 004481 272 GSCYRCFKG-NRFTEKEVCIVCDAKYCCNCV-----LRAMGSMPEGRKCVTCI 318 (750)
Q Consensus 272 ~~c~~c~~~-~~~~~~e~c~vc~~~yc~~cv-----~~~mg~m~egrkc~~c~ 318 (750)
..|+||... +.++.|+-|..||.++|..|- +...|--.++|-|..|-
T Consensus 166 ~~C~rCr~~F~~~~rkHHCr~CG~vFC~qcss~s~~lP~~Gi~~~VRVCd~C~ 218 (634)
T KOG1818|consen 166 EECLRCRVKFGLTNRKHHCRNCGQVFCGQCSSKSLTLPKLGIEKPVRVCDSCY 218 (634)
T ss_pred cccceeeeeeeeccccccccccchhhccCccccccCcccccccccceehhhhH
Confidence 579999887 344578999999999999875 56899999999999993
No 228
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=84.35 E-value=0.63 Score=46.09 Aligned_cols=23 Identities=26% Similarity=0.336 Sum_probs=19.5
Q ss_pred ceeeEEEeecCCCCchhHHhHhh
Q 004481 530 TLQKLLLVGCSGSGTSTIFKQAK 552 (750)
Q Consensus 530 r~iKLLLLGaGESGKSTILKQMK 552 (750)
.--.+.|+|..||||||++|-+-
T Consensus 32 ~Ge~~~l~G~nGsGKSTLl~~l~ 54 (192)
T cd03232 32 PGTLTALMGESGAGKTTLLDVLA 54 (192)
T ss_pred CCcEEEEECCCCCCHHHHHHHHh
Confidence 34468999999999999999765
No 229
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=84.35 E-value=0.59 Score=45.62 Aligned_cols=26 Identities=35% Similarity=0.370 Sum_probs=20.7
Q ss_pred ceeeEEEeecCCCCchhHHhHhhhhh
Q 004481 530 TLQKLLLVGCSGSGTSTIFKQAKILY 555 (750)
Q Consensus 530 r~iKLLLLGaGESGKSTILKQMKILh 555 (750)
.--.+.|+|..||||||++|-+-=++
T Consensus 25 ~G~~~~i~G~nGsGKSTLl~~l~G~~ 50 (178)
T cd03229 25 AGEIVALLGPSGSGKSTLLRCIAGLE 50 (178)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 34467899999999999999875443
No 230
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=84.24 E-value=0.61 Score=44.27 Aligned_cols=23 Identities=35% Similarity=0.606 Sum_probs=15.0
Q ss_pred ceeeEEEeecCCCCchhHHhHhh
Q 004481 530 TLQKLLLVGCSGSGTSTIFKQAK 552 (750)
Q Consensus 530 r~iKLLLLGaGESGKSTILKQMK 552 (750)
..-=+||.|..|+||||+++.+.
T Consensus 23 ~~~~~ll~G~~G~GKT~ll~~~~ 45 (185)
T PF13191_consen 23 SPRNLLLTGESGSGKTSLLRALL 45 (185)
T ss_dssp ----EEE-B-TTSSHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHH
Confidence 33457889999999999999744
No 231
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=84.24 E-value=0.61 Score=47.22 Aligned_cols=26 Identities=23% Similarity=0.387 Sum_probs=20.9
Q ss_pred ceeeEEEeecCCCCchhHHhHhhhhh
Q 004481 530 TLQKLLLVGCSGSGTSTIFKQAKILY 555 (750)
Q Consensus 530 r~iKLLLLGaGESGKSTILKQMKILh 555 (750)
.--.+.|+|+.||||||++|-+-=++
T Consensus 24 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 49 (232)
T PRK10771 24 RGERVAILGPSGAGKSTLLNLIAGFL 49 (232)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 34568999999999999999765443
No 232
>cd04102 RabL3 RabL3 (Rab-like3) subfamily. RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.
Probab=84.22 E-value=0.62 Score=47.32 Aligned_cols=21 Identities=33% Similarity=0.510 Sum_probs=19.1
Q ss_pred eeEEEeecCCCCchhHHhHhh
Q 004481 532 QKLLLVGCSGSGTSTIFKQAK 552 (750)
Q Consensus 532 iKLLLLGaGESGKSTILKQMK 552 (750)
+||+|+|.+++|||++++++.
T Consensus 1 vKIvlvGd~gVGKTSLi~~~~ 21 (202)
T cd04102 1 VRVLVVGDSGVGKSSLVHLIC 21 (202)
T ss_pred CEEEEECCCCCCHHHHHHHHH
Confidence 699999999999999999853
No 233
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=84.22 E-value=0.58 Score=46.80 Aligned_cols=26 Identities=23% Similarity=0.209 Sum_probs=20.7
Q ss_pred ceeeEEEeecCCCCchhHHhHhhhhh
Q 004481 530 TLQKLLLVGCSGSGTSTIFKQAKILY 555 (750)
Q Consensus 530 r~iKLLLLGaGESGKSTILKQMKILh 555 (750)
.--.+.|+|+.||||||++|-+-=+.
T Consensus 24 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 49 (177)
T cd03222 24 EGEVIGIVGPNGTGKTTAVKILAGQL 49 (177)
T ss_pred CCCEEEEECCCCChHHHHHHHHHcCC
Confidence 34468899999999999999765443
No 234
>PF01363 FYVE: FYVE zinc finger; InterPro: IPR000306 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The FYVE zinc finger is named after four proteins that it has been found in: Fab1, YOTB/ZK632.12, Vac1, and EEA1. The FYVE finger has been shown to bind two zinc ions []. The FYVE finger has eight potential zinc coordinating cysteine positions. Many members of this family also include two histidines in a motif R+HHC+XCG, where + represents a charged residue and X any residue. FYVE-type domains are divided into two known classes: FYVE domains that specifically bind to phosphatidylinositol 3-phosphate in lipid bilayers and FYVE-related domains of undetermined function []. Those that bind to phosphatidylinositol 3-phosphate are often found in proteins targeted to lipid membranes that are involved in regulating membrane traffic [, , ]. Most FYVE domains target proteins to endosomes by binding specifically to phosphatidylinositol-3-phosphate at the membrane surface. By contrast, the CARP2 FYVE-like domain is not optimized to bind to phosphoinositides or insert into lipid bilayers. FYVE domains are distinguished from other zinc fingers by three signature sequences: an N-terminal WxxD motif, a basic R(R/K)HHCR patch, and a C-terminal RVC motif. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0046872 metal ion binding; PDB: 1HYI_A 1JOC_B 1HYJ_A 1DVP_A 3ZYQ_A 4AVX_A 1VFY_A 3T7L_A 1X4U_A 1WFK_A ....
Probab=84.21 E-value=0.23 Score=41.81 Aligned_cols=48 Identities=27% Similarity=0.607 Sum_probs=29.7
Q ss_pred cCceecccCC-ceeeeeeeeeecCCccccccchh-------ccCCCcCCccccccc
Q 004481 271 KGSCYRCFKG-NRFTEKEVCIVCDAKYCCNCVLR-------AMGSMPEGRKCVTCI 318 (750)
Q Consensus 271 ~~~c~~c~~~-~~~~~~e~c~vc~~~yc~~cv~~-------~mg~m~egrkc~~c~ 318 (750)
...|+.|++. +.+.-|+.|-.||..+|..|... +++....-|-|..|.
T Consensus 9 ~~~C~~C~~~F~~~~rrhhCr~CG~~vC~~Cs~~~~~~~~~~~~~~~~~RvC~~C~ 64 (69)
T PF01363_consen 9 ASNCMICGKKFSLFRRRHHCRNCGRVVCSSCSSQRIPLPTPSSGSGEPVRVCDSCY 64 (69)
T ss_dssp -SB-TTT--B-BSSS-EEE-TTT--EEECCCS-EEEEET--GGTESEEEEE-HHHH
T ss_pred CCcCcCcCCcCCCceeeEccCCCCCEECCchhCCEEcccccccCCCCcCEECHHHH
Confidence 4689999998 55668999999999999999752 446666667777775
No 235
>PRK14528 adenylate kinase; Provisional
Probab=84.19 E-value=0.64 Score=46.21 Aligned_cols=24 Identities=21% Similarity=0.292 Sum_probs=20.1
Q ss_pred eeEEEeecCCCCchhHHhHhhhhh
Q 004481 532 QKLLLVGCSGSGTSTIFKQAKILY 555 (750)
Q Consensus 532 iKLLLLGaGESGKSTILKQMKILh 555 (750)
.+++++|+.+|||||+.+++.-.|
T Consensus 2 ~~i~i~G~pGsGKtt~a~~la~~~ 25 (186)
T PRK14528 2 KNIIFMGPPGAGKGTQAKILCERL 25 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHh
Confidence 368999999999999999875433
No 236
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=84.00 E-value=0.64 Score=46.73 Aligned_cols=26 Identities=31% Similarity=0.378 Sum_probs=20.8
Q ss_pred ceeeEEEeecCCCCchhHHhHhhhhh
Q 004481 530 TLQKLLLVGCSGSGTSTIFKQAKILY 555 (750)
Q Consensus 530 r~iKLLLLGaGESGKSTILKQMKILh 555 (750)
.--.+.|+|..||||||++|-+-=++
T Consensus 25 ~Ge~~~i~G~nGsGKSTLl~~i~G~~ 50 (227)
T cd03260 25 KGEITALIGPSGCGKSTLLRLLNRLN 50 (227)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 34568999999999999999765443
No 237
>PHA02530 pseT polynucleotide kinase; Provisional
Probab=83.99 E-value=0.6 Score=48.81 Aligned_cols=19 Identities=42% Similarity=0.592 Sum_probs=16.5
Q ss_pred EEEeecCCCCchhHHhHhh
Q 004481 534 LLLVGCSGSGTSTIFKQAK 552 (750)
Q Consensus 534 LLLLGaGESGKSTILKQMK 552 (750)
++|.|..+|||||+.|++.
T Consensus 5 iil~G~pGSGKSTla~~L~ 23 (300)
T PHA02530 5 ILTVGVPGSGKSTWAREFA 23 (300)
T ss_pred EEEEcCCCCCHHHHHHHHH
Confidence 5677999999999999864
No 238
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=83.99 E-value=0.65 Score=45.91 Aligned_cols=26 Identities=23% Similarity=0.323 Sum_probs=20.9
Q ss_pred ceeeEEEeecCCCCchhHHhHhhhhh
Q 004481 530 TLQKLLLVGCSGSGTSTIFKQAKILY 555 (750)
Q Consensus 530 r~iKLLLLGaGESGKSTILKQMKILh 555 (750)
..-.+.|+|..||||||++|-+-=++
T Consensus 25 ~Ge~~~i~G~nGsGKSTLl~~l~G~~ 50 (198)
T TIGR01189 25 AGEALQVTGPNGIGKTTLLRILAGLL 50 (198)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 34568999999999999999765443
No 239
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=83.97 E-value=0.61 Score=47.88 Aligned_cols=22 Identities=23% Similarity=0.300 Sum_probs=17.9
Q ss_pred EEEeecCCCCchhHHhHhhhhh
Q 004481 534 LLLVGCSGSGTSTIFKQAKILY 555 (750)
Q Consensus 534 LLLLGaGESGKSTILKQMKILh 555 (750)
+.|.|+.+|||||++|.+.-+.
T Consensus 2 igI~G~sGSGKTTla~~L~~~l 23 (220)
T cd02025 2 IGIAGSVAVGKSTTARVLQALL 23 (220)
T ss_pred EEeeCCCCCCHHHHHHHHHHHH
Confidence 4678999999999998876443
No 240
>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases. Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.
Probab=83.96 E-value=0.56 Score=44.18 Aligned_cols=18 Identities=22% Similarity=0.421 Sum_probs=16.4
Q ss_pred EEEeecCCCCchhHHhHh
Q 004481 534 LLLVGCSGSGTSTIFKQA 551 (750)
Q Consensus 534 LLLLGaGESGKSTILKQM 551 (750)
|+++|..++||||+++++
T Consensus 1 i~i~G~~~vGKTsli~~~ 18 (174)
T smart00174 1 LVVVGDGAVGKTCLLISY 18 (174)
T ss_pred CEEECCCCCCHHHHHHHH
Confidence 589999999999999975
No 241
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=83.92 E-value=0.62 Score=47.24 Aligned_cols=26 Identities=38% Similarity=0.262 Sum_probs=20.7
Q ss_pred eeeEEEeecCCCCchhHHhHhhhhhc
Q 004481 531 LQKLLLVGCSGSGTSTIFKQAKILYK 556 (750)
Q Consensus 531 ~iKLLLLGaGESGKSTILKQMKILh~ 556 (750)
--.+.|+|+.||||||++|-+-=++.
T Consensus 12 Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 37 (230)
T TIGR02770 12 GEVLALVGESGSGKSLTCLAILGLLP 37 (230)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 34578999999999999997654443
No 242
>PRK00131 aroK shikimate kinase; Reviewed
Probab=83.92 E-value=0.66 Score=43.75 Aligned_cols=22 Identities=32% Similarity=0.486 Sum_probs=18.7
Q ss_pred eeEEEeecCCCCchhHHhHhhh
Q 004481 532 QKLLLVGCSGSGTSTIFKQAKI 553 (750)
Q Consensus 532 iKLLLLGaGESGKSTILKQMKI 553 (750)
..|+|.|..+|||||+.|.+.-
T Consensus 5 ~~i~l~G~~GsGKstla~~La~ 26 (175)
T PRK00131 5 PNIVLIGFMGAGKSTIGRLLAK 26 (175)
T ss_pred CeEEEEcCCCCCHHHHHHHHHH
Confidence 4689999999999999887643
No 243
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=83.92 E-value=0.62 Score=47.57 Aligned_cols=23 Identities=22% Similarity=0.368 Sum_probs=19.3
Q ss_pred eeeEEEeecCCCCchhHHhHhhh
Q 004481 531 LQKLLLVGCSGSGTSTIFKQAKI 553 (750)
Q Consensus 531 ~iKLLLLGaGESGKSTILKQMKI 553 (750)
.--++|.|..||||||++|++.-
T Consensus 43 ~~~~~l~G~~G~GKTtl~~~l~~ 65 (269)
T TIGR03015 43 EGFILITGEVGAGKTTLIRNLLK 65 (269)
T ss_pred CCEEEEEcCCCCCHHHHHHHHHH
Confidence 44589999999999999998643
No 244
>cd04126 Rab20 Rab20 subfamily. Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo
Probab=83.92 E-value=0.64 Score=47.84 Aligned_cols=21 Identities=19% Similarity=0.404 Sum_probs=19.1
Q ss_pred eeEEEeecCCCCchhHHhHhh
Q 004481 532 QKLLLVGCSGSGTSTIFKQAK 552 (750)
Q Consensus 532 iKLLLLGaGESGKSTILKQMK 552 (750)
+||+++|.+++||||+++++.
T Consensus 1 ~KIvivG~~~vGKTSLi~r~~ 21 (220)
T cd04126 1 LKVVLLGDMNVGKTSLLHRYM 21 (220)
T ss_pred CEEEEECCCCCcHHHHHHHHh
Confidence 589999999999999999863
No 245
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=83.91 E-value=0.63 Score=47.12 Aligned_cols=26 Identities=35% Similarity=0.531 Sum_probs=21.1
Q ss_pred ceeeEEEeecCCCCchhHHhHhhhhh
Q 004481 530 TLQKLLLVGCSGSGTSTIFKQAKILY 555 (750)
Q Consensus 530 r~iKLLLLGaGESGKSTILKQMKILh 555 (750)
.--.+.|+|..||||||++|-+-=++
T Consensus 28 ~Ge~~~l~G~nGsGKSTLl~~i~G~~ 53 (238)
T cd03249 28 PGKTVALVGSSGCGKSTVVSLLERFY 53 (238)
T ss_pred CCCEEEEEeCCCCCHHHHHHHHhccC
Confidence 34568999999999999999765443
No 246
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=83.90 E-value=0.65 Score=46.65 Aligned_cols=25 Identities=20% Similarity=0.371 Sum_probs=20.3
Q ss_pred ceeeEEEeecCCCCchhHHhHhhhh
Q 004481 530 TLQKLLLVGCSGSGTSTIFKQAKIL 554 (750)
Q Consensus 530 r~iKLLLLGaGESGKSTILKQMKIL 554 (750)
.--.+.|+|+.||||||++|-|-=+
T Consensus 28 ~G~~~~i~G~nGsGKSTLl~~l~G~ 52 (229)
T cd03254 28 PGETVAIVGPTGAGKTTLINLLMRF 52 (229)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 3345899999999999999987533
No 247
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=83.85 E-value=0.67 Score=43.11 Aligned_cols=21 Identities=24% Similarity=0.453 Sum_probs=18.5
Q ss_pred EEEeecCCCCchhHHhHhhhh
Q 004481 534 LLLVGCSGSGTSTIFKQAKIL 554 (750)
Q Consensus 534 LLLLGaGESGKSTILKQMKIL 554 (750)
|+|.|..+|||||+.|.+.-.
T Consensus 2 i~l~G~~GsGKstla~~la~~ 22 (154)
T cd00464 2 IVLIGMMGAGKTTVGRLLAKA 22 (154)
T ss_pred EEEEcCCCCCHHHHHHHHHHH
Confidence 789999999999999987633
No 248
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=83.82 E-value=0.63 Score=46.47 Aligned_cols=24 Identities=29% Similarity=0.367 Sum_probs=20.2
Q ss_pred eeEEEeecCCCCchhHHhHhhhhh
Q 004481 532 QKLLLVGCSGSGTSTIFKQAKILY 555 (750)
Q Consensus 532 iKLLLLGaGESGKSTILKQMKILh 555 (750)
-.+.|+|..||||||++|-+-=++
T Consensus 24 e~~~i~G~nGsGKSTLl~~l~G~~ 47 (214)
T cd03297 24 EVTGIFGASGAGKSTLLRCIAGLE 47 (214)
T ss_pred eeEEEECCCCCCHHHHHHHHhCCC
Confidence 568999999999999999865443
No 249
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=83.79 E-value=0.66 Score=47.38 Aligned_cols=25 Identities=24% Similarity=0.291 Sum_probs=20.5
Q ss_pred ceeeEEEeecCCCCchhHHhHhhhh
Q 004481 530 TLQKLLLVGCSGSGTSTIFKQAKIL 554 (750)
Q Consensus 530 r~iKLLLLGaGESGKSTILKQMKIL 554 (750)
.--.+.|+|..||||||++|-+-=+
T Consensus 46 ~Ge~~~i~G~NGsGKSTLl~~i~Gl 70 (236)
T cd03267 46 KGEIVGFIGPNGAGKTTTLKILSGL 70 (236)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3457899999999999999976544
No 250
>cd04147 Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=83.78 E-value=0.63 Score=45.83 Aligned_cols=19 Identities=21% Similarity=0.688 Sum_probs=17.9
Q ss_pred eEEEeecCCCCchhHHhHh
Q 004481 533 KLLLVGCSGSGTSTIFKQA 551 (750)
Q Consensus 533 KLLLLGaGESGKSTILKQM 551 (750)
||+++|..++||||++.++
T Consensus 1 kv~vvG~~~vGKTsll~~~ 19 (198)
T cd04147 1 RLVFMGAAGVGKTALIQRF 19 (198)
T ss_pred CEEEECCCCCCHHHHHHHH
Confidence 7999999999999999976
No 251
>cd00882 Ras_like_GTPase Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb
Probab=83.77 E-value=0.47 Score=41.14 Aligned_cols=19 Identities=26% Similarity=0.370 Sum_probs=16.3
Q ss_pred EeecCCCCchhHHhHhhhh
Q 004481 536 LVGCSGSGTSTIFKQAKIL 554 (750)
Q Consensus 536 LLGaGESGKSTILKQMKIL 554 (750)
++|..+|||||+++++.-.
T Consensus 1 iiG~~~~GKStl~~~l~~~ 19 (157)
T cd00882 1 VVGDSGVGKTSLLNRLLGG 19 (157)
T ss_pred CCCcCCCcHHHHHHHHHhC
Confidence 5899999999999997543
No 252
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=83.76 E-value=0.64 Score=46.80 Aligned_cols=25 Identities=36% Similarity=0.397 Sum_probs=20.8
Q ss_pred eeeEEEeecCCCCchhHHhHhhhhh
Q 004481 531 LQKLLLVGCSGSGTSTIFKQAKILY 555 (750)
Q Consensus 531 ~iKLLLLGaGESGKSTILKQMKILh 555 (750)
--.+.|+|..||||||++|-+-=++
T Consensus 36 Ge~~~i~G~nGsGKSTLl~~i~Gl~ 60 (228)
T PRK10584 36 GETIALIGESGSGKSTLLAILAGLD 60 (228)
T ss_pred CCEEEEECCCCCCHHHHHHHHHcCC
Confidence 4568999999999999999876554
No 253
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=83.65 E-value=0.67 Score=47.11 Aligned_cols=26 Identities=23% Similarity=0.278 Sum_probs=21.2
Q ss_pred ceeeEEEeecCCCCchhHHhHhhhhh
Q 004481 530 TLQKLLLVGCSGSGTSTIFKQAKILY 555 (750)
Q Consensus 530 r~iKLLLLGaGESGKSTILKQMKILh 555 (750)
.--.+.|+|..||||||++|-+-=+.
T Consensus 28 ~Ge~~~l~G~nGsGKSTLl~~l~G~~ 53 (241)
T PRK10895 28 SGEIVGLLGPNGAGKTTTFYMVVGIV 53 (241)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 34568999999999999999876543
No 254
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=83.64 E-value=0.67 Score=46.77 Aligned_cols=26 Identities=42% Similarity=0.559 Sum_probs=21.3
Q ss_pred ceeeEEEeecCCCCchhHHhHhhhhh
Q 004481 530 TLQKLLLVGCSGSGTSTIFKQAKILY 555 (750)
Q Consensus 530 r~iKLLLLGaGESGKSTILKQMKILh 555 (750)
.--.+.|+|+.||||||++|-+-=++
T Consensus 26 ~Ge~~~l~G~nGsGKSTLl~~i~Gl~ 51 (236)
T cd03253 26 AGKKVAIVGPSGSGKSTILRLLFRFY 51 (236)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccc
Confidence 34568999999999999999876554
No 255
>COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]
Probab=83.64 E-value=0.81 Score=52.18 Aligned_cols=41 Identities=29% Similarity=0.462 Sum_probs=33.4
Q ss_pred eeEEEeecCCCCchhHHhHhhhhhcC---------CCCCHHHHhhhhHHH
Q 004481 532 QKLLLVGCSGSGTSTIFKQAKILYKA---------VPFSDDEHENIKLKI 572 (750)
Q Consensus 532 iKLLLLGaGESGKSTILKQMKILh~~---------~GFSeeER~~~K~II 572 (750)
==+.|+|..||||||++|-+-=||+| ++.+.+.++.||..+
T Consensus 350 elvFliG~NGsGKST~~~LLtGL~~PqsG~I~ldg~pV~~e~ledYR~Lf 399 (546)
T COG4615 350 ELVFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPVSAEQLEDYRKLF 399 (546)
T ss_pred cEEEEECCCCCcHHHHHHHHhcccCCCCCceeECCccCCCCCHHHHHHHH
Confidence 34789999999999999988877776 557888888888654
No 256
>KOG3362 consensus Predicted BBOX Zn-finger protein [General function prediction only]
Probab=83.62 E-value=0.28 Score=48.55 Aligned_cols=26 Identities=31% Similarity=0.778 Sum_probs=22.2
Q ss_pred CCcCceecccCCceeeeeeeeeecCCcccc
Q 004481 269 GKKGSCYRCFKGNRFTEKEVCIVCDAKYCC 298 (750)
Q Consensus 269 ~k~~~c~~c~~~~~~~~~e~c~vc~~~yc~ 298 (750)
--+..|+.|| ++.+-.|..||++||+
T Consensus 116 P~r~fCaVCG----~~S~ysC~~CG~kyCs 141 (156)
T KOG3362|consen 116 PLRKFCAVCG----YDSKYSCVNCGTKYCS 141 (156)
T ss_pred CcchhhhhcC----CCchhHHHhcCCceee
Confidence 4456999998 5788899999999996
No 257
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=83.62 E-value=0.68 Score=47.21 Aligned_cols=25 Identities=40% Similarity=0.483 Sum_probs=20.4
Q ss_pred eeeEEEeecCCCCchhHHhHhhhhh
Q 004481 531 LQKLLLVGCSGSGTSTIFKQAKILY 555 (750)
Q Consensus 531 ~iKLLLLGaGESGKSTILKQMKILh 555 (750)
--.+.|+|..||||||++|-|-=++
T Consensus 27 Ge~~~i~G~nGsGKSTLl~~l~G~~ 51 (242)
T cd03295 27 GEFLVLIGPSGSGKTTTMKMINRLI 51 (242)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3458999999999999999875444
No 258
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=83.61 E-value=0.66 Score=46.02 Aligned_cols=20 Identities=40% Similarity=0.534 Sum_probs=17.4
Q ss_pred EEEeecCCCCchhHHhHhhh
Q 004481 534 LLLVGCSGSGTSTIFKQAKI 553 (750)
Q Consensus 534 LLLLGaGESGKSTILKQMKI 553 (750)
++|+|..||||||+++.+--
T Consensus 6 i~l~G~sGsGKSTl~~~la~ 25 (176)
T PRK09825 6 YILMGVSGSGKSLIGSKIAA 25 (176)
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 68999999999999997543
No 259
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=83.57 E-value=0.7 Score=45.29 Aligned_cols=25 Identities=16% Similarity=0.133 Sum_probs=20.5
Q ss_pred eeeEEEeecCCCCchhHHhHhhhhh
Q 004481 531 LQKLLLVGCSGSGTSTIFKQAKILY 555 (750)
Q Consensus 531 ~iKLLLLGaGESGKSTILKQMKILh 555 (750)
.-.+.|+|..||||||++|-+-=++
T Consensus 26 G~~~~i~G~nGsGKSTLl~~l~G~~ 50 (182)
T cd03215 26 GEIVGIAGLVGNGQTELAEALFGLR 50 (182)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCC
Confidence 4468999999999999999865444
No 260
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=83.56 E-value=0.7 Score=44.86 Aligned_cols=26 Identities=35% Similarity=0.623 Sum_probs=20.9
Q ss_pred ceeeEEEeecCCCCchhHHhHhhhhh
Q 004481 530 TLQKLLLVGCSGSGTSTIFKQAKILY 555 (750)
Q Consensus 530 r~iKLLLLGaGESGKSTILKQMKILh 555 (750)
.--.+.|+|..||||||++|-+-=++
T Consensus 26 ~Ge~~~i~G~nGsGKSTLl~~l~G~~ 51 (166)
T cd03223 26 PGDRLLITGPSGTGKSSLFRALAGLW 51 (166)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 34468999999999999999765443
No 261
>PRK10908 cell division protein FtsE; Provisional
Probab=83.55 E-value=0.69 Score=46.45 Aligned_cols=26 Identities=31% Similarity=0.332 Sum_probs=21.1
Q ss_pred ceeeEEEeecCCCCchhHHhHhhhhh
Q 004481 530 TLQKLLLVGCSGSGTSTIFKQAKILY 555 (750)
Q Consensus 530 r~iKLLLLGaGESGKSTILKQMKILh 555 (750)
.--.+.|+|..||||||++|-+-=++
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~G~~ 52 (222)
T PRK10908 27 PGEMAFLTGHSGAGKSTLLKLICGIE 52 (222)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 44568999999999999999765444
No 262
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=83.54 E-value=0.68 Score=48.10 Aligned_cols=25 Identities=24% Similarity=0.394 Sum_probs=20.2
Q ss_pred ceeeEEEeecCCCCchhHHhHhhhh
Q 004481 530 TLQKLLLVGCSGSGTSTIFKQAKIL 554 (750)
Q Consensus 530 r~iKLLLLGaGESGKSTILKQMKIL 554 (750)
.--.+.|+|..||||||++|-+-=+
T Consensus 26 ~Ge~~~i~G~nGsGKSTLl~~l~Gl 50 (255)
T PRK11248 26 SGELLVVLGPSGCGKTTLLNLIAGF 50 (255)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3456899999999999999976433
No 263
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=83.52 E-value=0.69 Score=47.09 Aligned_cols=25 Identities=32% Similarity=0.379 Sum_probs=20.4
Q ss_pred eeeEEEeecCCCCchhHHhHhhhhh
Q 004481 531 LQKLLLVGCSGSGTSTIFKQAKILY 555 (750)
Q Consensus 531 ~iKLLLLGaGESGKSTILKQMKILh 555 (750)
--.+.|+|..||||||++|-+-=++
T Consensus 28 Ge~~~i~G~nGsGKSTLl~~l~Gl~ 52 (239)
T cd03296 28 GELVALLGPSGSGKTTLLRLIAGLE 52 (239)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3458999999999999999765544
No 264
>PRK14527 adenylate kinase; Provisional
Probab=83.46 E-value=0.69 Score=45.68 Aligned_cols=24 Identities=17% Similarity=0.301 Sum_probs=19.6
Q ss_pred eeEEEeecCCCCchhHHhHhhhhh
Q 004481 532 QKLLLVGCSGSGTSTIFKQAKILY 555 (750)
Q Consensus 532 iKLLLLGaGESGKSTILKQMKILh 555 (750)
.-++++|+++|||||+.+++.--|
T Consensus 7 ~~i~i~G~pGsGKsT~a~~La~~~ 30 (191)
T PRK14527 7 KVVIFLGPPGAGKGTQAERLAQEL 30 (191)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHh
Confidence 458999999999999999875333
No 265
>PRK14241 phosphate transporter ATP-binding protein; Provisional
Probab=83.45 E-value=0.69 Score=47.70 Aligned_cols=26 Identities=23% Similarity=0.365 Sum_probs=21.2
Q ss_pred ceeeEEEeecCCCCchhHHhHhhhhh
Q 004481 530 TLQKLLLVGCSGSGTSTIFKQAKILY 555 (750)
Q Consensus 530 r~iKLLLLGaGESGKSTILKQMKILh 555 (750)
.--.+.|+|..||||||++|-+-=++
T Consensus 29 ~Ge~~~i~G~nGsGKSTLl~~laGl~ 54 (258)
T PRK14241 29 PRSVTAFIGPSGCGKSTVLRTLNRMH 54 (258)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhccC
Confidence 34568999999999999999876544
No 266
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=83.43 E-value=0.68 Score=48.35 Aligned_cols=26 Identities=38% Similarity=0.410 Sum_probs=21.0
Q ss_pred ceeeEEEeecCCCCchhHHhHhhhhh
Q 004481 530 TLQKLLLVGCSGSGTSTIFKQAKILY 555 (750)
Q Consensus 530 r~iKLLLLGaGESGKSTILKQMKILh 555 (750)
.--.+.|+|..||||||++|-|-=++
T Consensus 32 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 57 (272)
T PRK15056 32 GGSIAALVGVNGSGKSTLFKALMGFV 57 (272)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 34568999999999999999875443
No 267
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=83.41 E-value=0.72 Score=44.83 Aligned_cols=26 Identities=27% Similarity=0.273 Sum_probs=20.6
Q ss_pred ceeeEEEeecCCCCchhHHhHhhhhh
Q 004481 530 TLQKLLLVGCSGSGTSTIFKQAKILY 555 (750)
Q Consensus 530 r~iKLLLLGaGESGKSTILKQMKILh 555 (750)
.--.+.|+|..||||||++|-+-=++
T Consensus 25 ~Ge~~~i~G~nGsGKStLl~~l~G~~ 50 (173)
T cd03230 25 KGEIYGLLGPNGAGKTTLIKIILGLL 50 (173)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 34468999999999999999764443
No 268
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=83.37 E-value=0.73 Score=44.63 Aligned_cols=25 Identities=32% Similarity=0.345 Sum_probs=20.2
Q ss_pred ceeeEEEeecCCCCchhHHhHhhhh
Q 004481 530 TLQKLLLVGCSGSGTSTIFKQAKIL 554 (750)
Q Consensus 530 r~iKLLLLGaGESGKSTILKQMKIL 554 (750)
.--.+.|+|..||||||++|-+==+
T Consensus 25 ~Ge~~~l~G~nGsGKSTLl~~i~G~ 49 (163)
T cd03216 25 RGEVHALLGENGAGKSTLMKILSGL 49 (163)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3446889999999999999976433
No 269
>PRK14526 adenylate kinase; Provisional
Probab=83.25 E-value=0.71 Score=47.37 Aligned_cols=20 Identities=45% Similarity=0.617 Sum_probs=18.3
Q ss_pred eEEEeecCCCCchhHHhHhh
Q 004481 533 KLLLVGCSGSGTSTIFKQAK 552 (750)
Q Consensus 533 KLLLLGaGESGKSTILKQMK 552 (750)
||+|+|+.||||||+.+.+-
T Consensus 2 ~i~l~G~pGsGKsT~a~~La 21 (211)
T PRK14526 2 KLVFLGPPGSGKGTIAKILS 21 (211)
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 79999999999999998865
No 270
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=83.20 E-value=0.73 Score=46.06 Aligned_cols=26 Identities=31% Similarity=0.455 Sum_probs=20.8
Q ss_pred ceeeEEEeecCCCCchhHHhHhhhhh
Q 004481 530 TLQKLLLVGCSGSGTSTIFKQAKILY 555 (750)
Q Consensus 530 r~iKLLLLGaGESGKSTILKQMKILh 555 (750)
.--.+.|+|..||||||++|-+-=++
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~G~~ 52 (207)
T PRK13539 27 AGEALVLTGPNGSGKTTLLRLIAGLL 52 (207)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 34568999999999999999765443
No 271
>PRK04182 cytidylate kinase; Provisional
Probab=83.19 E-value=0.75 Score=43.81 Aligned_cols=20 Identities=25% Similarity=0.416 Sum_probs=18.2
Q ss_pred eEEEeecCCCCchhHHhHhh
Q 004481 533 KLLLVGCSGSGTSTIFKQAK 552 (750)
Q Consensus 533 KLLLLGaGESGKSTILKQMK 552 (750)
+|+|.|..||||||+.|++-
T Consensus 2 ~I~i~G~~GsGKstia~~la 21 (180)
T PRK04182 2 IITISGPPGSGKTTVARLLA 21 (180)
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 68999999999999999874
No 272
>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....
Probab=83.18 E-value=0.78 Score=45.46 Aligned_cols=21 Identities=33% Similarity=0.558 Sum_probs=18.2
Q ss_pred eeEEEeecCCCCchhHHhHhh
Q 004481 532 QKLLLVGCSGSGTSTIFKQAK 552 (750)
Q Consensus 532 iKLLLLGaGESGKSTILKQMK 552 (750)
|++.|+|.+.+||||+|.++=
T Consensus 1 i~ialvG~PNvGKStLfN~Lt 21 (156)
T PF02421_consen 1 IRIALVGNPNVGKSTLFNALT 21 (156)
T ss_dssp -EEEEEESTTSSHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHH
Confidence 689999999999999998753
No 273
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=83.17 E-value=0.73 Score=46.47 Aligned_cols=26 Identities=38% Similarity=0.514 Sum_probs=21.0
Q ss_pred ceeeEEEeecCCCCchhHHhHhhhhh
Q 004481 530 TLQKLLLVGCSGSGTSTIFKQAKILY 555 (750)
Q Consensus 530 r~iKLLLLGaGESGKSTILKQMKILh 555 (750)
.--.+.|+|+.||||||++|-|-=++
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 52 (234)
T cd03251 27 AGETVALVGPSGSGKSTLVNLIPRFY 52 (234)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccc
Confidence 44568999999999999999775443
No 274
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=83.16 E-value=0.72 Score=46.77 Aligned_cols=25 Identities=20% Similarity=0.232 Sum_probs=20.5
Q ss_pred eeeEEEeecCCCCchhHHhHhhhhh
Q 004481 531 LQKLLLVGCSGSGTSTIFKQAKILY 555 (750)
Q Consensus 531 ~iKLLLLGaGESGKSTILKQMKILh 555 (750)
--.+.|+|+.||||||++|-+-=++
T Consensus 31 Ge~~~i~G~nGsGKSTLl~~l~G~~ 55 (237)
T PRK11614 31 GEIVTLIGANGAGKTTLLGTLCGDP 55 (237)
T ss_pred CcEEEEECCCCCCHHHHHHHHcCCC
Confidence 3458999999999999999875444
No 275
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=83.13 E-value=0.73 Score=46.90 Aligned_cols=26 Identities=31% Similarity=0.545 Sum_probs=21.0
Q ss_pred ceeeEEEeecCCCCchhHHhHhhhhh
Q 004481 530 TLQKLLLVGCSGSGTSTIFKQAKILY 555 (750)
Q Consensus 530 r~iKLLLLGaGESGKSTILKQMKILh 555 (750)
.--.+.|+|..||||||++|-+-=++
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~G~~ 52 (242)
T PRK11124 27 QGETLVLLGPSGAGKSSLLRVLNLLE 52 (242)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 34568999999999999999765443
No 276
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=83.13 E-value=0.79 Score=42.42 Aligned_cols=19 Identities=37% Similarity=0.688 Sum_probs=17.4
Q ss_pred EEEeecCCCCchhHHhHhh
Q 004481 534 LLLVGCSGSGTSTIFKQAK 552 (750)
Q Consensus 534 LLLLGaGESGKSTILKQMK 552 (750)
|||.|+.|+||||+++++-
T Consensus 2 vlL~G~~G~GKt~l~~~la 20 (139)
T PF07728_consen 2 VLLVGPPGTGKTTLARELA 20 (139)
T ss_dssp EEEEESSSSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 7999999999999999864
No 277
>cd00880 Era_like Era (E. coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se
Probab=83.07 E-value=0.54 Score=41.63 Aligned_cols=16 Identities=25% Similarity=0.544 Sum_probs=14.4
Q ss_pred EeecCCCCchhHHhHh
Q 004481 536 LVGCSGSGTSTIFKQA 551 (750)
Q Consensus 536 LLGaGESGKSTILKQM 551 (750)
|+|..+|||||+++++
T Consensus 1 i~G~~gsGKstl~~~l 16 (163)
T cd00880 1 LFGRTNAGKSSLLNAL 16 (163)
T ss_pred CcCCCCCCHHHHHHHH
Confidence 5899999999999975
No 278
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=82.97 E-value=0.73 Score=48.02 Aligned_cols=24 Identities=38% Similarity=0.436 Sum_probs=19.8
Q ss_pred eeeEEEeecCCCCchhHHhHhhhh
Q 004481 531 LQKLLLVGCSGSGTSTIFKQAKIL 554 (750)
Q Consensus 531 ~iKLLLLGaGESGKSTILKQMKIL 554 (750)
--.+.|+|..||||||++|-+-=+
T Consensus 27 Ge~~~i~G~nGsGKSTLl~~l~Gl 50 (271)
T PRK13638 27 SPVTGLVGANGCGKSTLFMNLSGL 50 (271)
T ss_pred CCEEEEECCCCCCHHHHHHHHcCC
Confidence 346899999999999999976533
No 279
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=82.87 E-value=1.2 Score=51.16 Aligned_cols=30 Identities=37% Similarity=0.403 Sum_probs=25.2
Q ss_pred hcceeeEEEeecCCCCchhHHhHhhhhhcC
Q 004481 528 RRTLQKLLLVGCSGSGTSTIFKQAKILYKA 557 (750)
Q Consensus 528 ~kr~iKLLLLGaGESGKSTILKQMKILh~~ 557 (750)
-++.-|++++|..||||||++|-+-=+|.|
T Consensus 366 i~~G~~~aIvG~sGsGKSTLl~ll~gl~~p 395 (582)
T PRK11176 366 IPAGKTVALVGRSGSGKSTIANLLTRFYDI 395 (582)
T ss_pred eCCCCEEEEECCCCCCHHHHHHHHHhccCC
Confidence 345678999999999999999987777664
No 280
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=82.87 E-value=0.7 Score=51.42 Aligned_cols=23 Identities=26% Similarity=0.450 Sum_probs=18.3
Q ss_pred EEEeecCCCCchhHHhHhhhhhc
Q 004481 534 LLLVGCSGSGTSTIFKQAKILYK 556 (750)
Q Consensus 534 LLLLGaGESGKSTILKQMKILh~ 556 (750)
+-|||++||||||+|+-+==+..
T Consensus 34 ~~lLGPSGcGKTTlLR~IAGfe~ 56 (352)
T COG3842 34 VTLLGPSGCGKTTLLRMIAGFEQ 56 (352)
T ss_pred EEEECCCCCCHHHHHHHHhCCCC
Confidence 56999999999999987644433
No 281
>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta). SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ
Probab=82.86 E-value=0.77 Score=46.10 Aligned_cols=20 Identities=35% Similarity=0.647 Sum_probs=18.5
Q ss_pred eEEEeecCCCCchhHHhHhh
Q 004481 533 KLLLVGCSGSGTSTIFKQAK 552 (750)
Q Consensus 533 KLLLLGaGESGKSTILKQMK 552 (750)
+|||+|..+|||||++.++.
T Consensus 2 ~vll~G~~~sGKTsL~~~l~ 21 (203)
T cd04105 2 TVLLLGPSDSGKTALFTKLT 21 (203)
T ss_pred eEEEEcCCCCCHHHHHHHHh
Confidence 58999999999999999875
No 282
>PRK14738 gmk guanylate kinase; Provisional
Probab=82.82 E-value=0.78 Score=46.31 Aligned_cols=23 Identities=17% Similarity=0.390 Sum_probs=19.4
Q ss_pred ceeeEEEeecCCCCchhHHhHhh
Q 004481 530 TLQKLLLVGCSGSGTSTIFKQAK 552 (750)
Q Consensus 530 r~iKLLLLGaGESGKSTILKQMK 552 (750)
+..-++|.|++|||||||++++.
T Consensus 12 ~~~~ivi~GpsG~GK~tl~~~L~ 34 (206)
T PRK14738 12 KPLLVVISGPSGVGKDAVLARMR 34 (206)
T ss_pred CCeEEEEECcCCCCHHHHHHHHH
Confidence 44567789999999999999884
No 283
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=82.75 E-value=0.8 Score=43.53 Aligned_cols=26 Identities=38% Similarity=0.470 Sum_probs=21.3
Q ss_pred eeeEEEeecCCCCchhHHhHhhhhhc
Q 004481 531 LQKLLLVGCSGSGTSTIFKQAKILYK 556 (750)
Q Consensus 531 ~iKLLLLGaGESGKSTILKQMKILh~ 556 (750)
.-.++|+|..||||||++|.+--++.
T Consensus 25 g~~~~i~G~nGsGKStll~~l~g~~~ 50 (157)
T cd00267 25 GEIVALVGPNGSGKSTLLRAIAGLLK 50 (157)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 35688999999999999998765543
No 284
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=82.71 E-value=0.77 Score=47.10 Aligned_cols=27 Identities=41% Similarity=0.482 Sum_probs=21.6
Q ss_pred ceeeEEEeecCCCCchhHHhHhhhhhc
Q 004481 530 TLQKLLLVGCSGSGTSTIFKQAKILYK 556 (750)
Q Consensus 530 r~iKLLLLGaGESGKSTILKQMKILh~ 556 (750)
.--.+.|+|..||||||++|-|-=++.
T Consensus 25 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~ 51 (252)
T TIGR03005 25 AGEKVALIGPSGSGKSTILRILMTLEP 51 (252)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 344689999999999999998765543
No 285
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=82.70 E-value=0.77 Score=47.01 Aligned_cols=25 Identities=24% Similarity=0.433 Sum_probs=20.2
Q ss_pred ceeeEEEeecCCCCchhHHhHhhhh
Q 004481 530 TLQKLLLVGCSGSGTSTIFKQAKIL 554 (750)
Q Consensus 530 r~iKLLLLGaGESGKSTILKQMKIL 554 (750)
.--.+.|+|..||||||++|-+-=+
T Consensus 30 ~Ge~~~l~G~nGsGKSTLl~~l~Gl 54 (255)
T PRK11300 30 EQEIVSLIGPNGAGKTTVFNCLTGF 54 (255)
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCC
Confidence 3456899999999999999965544
No 286
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=82.69 E-value=0.75 Score=45.47 Aligned_cols=22 Identities=27% Similarity=0.593 Sum_probs=18.7
Q ss_pred ceeeEEEeecCCCCchhHHhHh
Q 004481 530 TLQKLLLVGCSGSGTSTIFKQA 551 (750)
Q Consensus 530 r~iKLLLLGaGESGKSTILKQM 551 (750)
..-.+++.|..+|||||+++-+
T Consensus 24 ~g~~i~I~G~tGSGKTTll~aL 45 (186)
T cd01130 24 ARKNILISGGTGSGKTTLLNAL 45 (186)
T ss_pred CCCEEEEECCCCCCHHHHHHHH
Confidence 3446899999999999999874
No 287
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=82.69 E-value=0.78 Score=45.86 Aligned_cols=26 Identities=23% Similarity=0.317 Sum_probs=20.8
Q ss_pred ceeeEEEeecCCCCchhHHhHhhhhh
Q 004481 530 TLQKLLLVGCSGSGTSTIFKQAKILY 555 (750)
Q Consensus 530 r~iKLLLLGaGESGKSTILKQMKILh 555 (750)
..-.+.|+|..||||||++|-|-=++
T Consensus 23 ~Ge~~~i~G~nGsGKSTLl~~l~G~~ 48 (213)
T TIGR01277 23 DGEIVAIMGPSGAGKSTLLNLIAGFI 48 (213)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 34568999999999999999765443
No 288
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=82.66 E-value=0.76 Score=48.90 Aligned_cols=26 Identities=27% Similarity=0.244 Sum_probs=20.9
Q ss_pred ceeeEEEeecCCCCchhHHhHhhhhh
Q 004481 530 TLQKLLLVGCSGSGTSTIFKQAKILY 555 (750)
Q Consensus 530 r~iKLLLLGaGESGKSTILKQMKILh 555 (750)
.--.+.|+|+.||||||++|-+-=++
T Consensus 29 ~Ge~~~l~G~NGaGKSTLl~~l~Gl~ 54 (303)
T TIGR01288 29 RGECFGLLGPNGAGKSTIARMLLGMI 54 (303)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 34568999999999999999865443
No 289
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=82.66 E-value=0.78 Score=46.62 Aligned_cols=26 Identities=31% Similarity=0.469 Sum_probs=20.9
Q ss_pred eeeEEEeecCCCCchhHHhHhhhhhc
Q 004481 531 LQKLLLVGCSGSGTSTIFKQAKILYK 556 (750)
Q Consensus 531 ~iKLLLLGaGESGKSTILKQMKILh~ 556 (750)
--.+.|+|..||||||++|-+-=++.
T Consensus 27 Ge~~~l~G~nGsGKSTLl~~l~G~~~ 52 (240)
T PRK09493 27 GEVVVIIGPSGSGKSTLLRCINKLEE 52 (240)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCC
Confidence 34588999999999999997665543
No 290
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=82.64 E-value=0.77 Score=48.03 Aligned_cols=24 Identities=38% Similarity=0.408 Sum_probs=19.8
Q ss_pred eeeEEEeecCCCCchhHHhHhhhh
Q 004481 531 LQKLLLVGCSGSGTSTIFKQAKIL 554 (750)
Q Consensus 531 ~iKLLLLGaGESGKSTILKQMKIL 554 (750)
--.+.|+|..||||||++|-+-=+
T Consensus 38 Ge~~~I~G~NGsGKSTLlk~l~Gl 61 (257)
T PRK11247 38 GQFVAVVGRSGCGKSTLLRLLAGL 61 (257)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 346899999999999999976433
No 291
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=82.63 E-value=0.77 Score=47.72 Aligned_cols=25 Identities=20% Similarity=0.278 Sum_probs=20.2
Q ss_pred eeeEEEeecCCCCchhHHhHhhhhh
Q 004481 531 LQKLLLVGCSGSGTSTIFKQAKILY 555 (750)
Q Consensus 531 ~iKLLLLGaGESGKSTILKQMKILh 555 (750)
--.+.|+|..||||||++|-+-=++
T Consensus 25 Ge~~~i~G~NGsGKSTLlk~L~G~~ 49 (246)
T cd03237 25 SEVIGILGPNGIGKTTFIKMLAGVL 49 (246)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3468899999999999999765443
No 292
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=82.61 E-value=0.78 Score=46.99 Aligned_cols=26 Identities=35% Similarity=0.264 Sum_probs=20.6
Q ss_pred ceeeEEEeecCCCCchhHHhHhhhhh
Q 004481 530 TLQKLLLVGCSGSGTSTIFKQAKILY 555 (750)
Q Consensus 530 r~iKLLLLGaGESGKSTILKQMKILh 555 (750)
.--.+.|+|..||||||++|-+-=++
T Consensus 28 ~Ge~~~i~G~nGsGKSTLl~~l~G~~ 53 (253)
T TIGR02323 28 PGEVLGIVGESGSGKSTLLGCLAGRL 53 (253)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 34578999999999999999654443
No 293
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE. This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.
Probab=82.60 E-value=0.78 Score=47.67 Aligned_cols=26 Identities=31% Similarity=0.262 Sum_probs=21.1
Q ss_pred ceeeEEEeecCCCCchhHHhHhhhhh
Q 004481 530 TLQKLLLVGCSGSGTSTIFKQAKILY 555 (750)
Q Consensus 530 r~iKLLLLGaGESGKSTILKQMKILh 555 (750)
.--.+.|+|..||||||++|-|-=++
T Consensus 36 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 61 (265)
T TIGR02769 36 EGETVGLLGRSGCGKSTLARLLLGLE 61 (265)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 44578999999999999999765454
No 294
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=82.60 E-value=0.76 Score=45.60 Aligned_cols=22 Identities=23% Similarity=0.256 Sum_probs=18.9
Q ss_pred eeeEEEeecCCCCchhHHhHhh
Q 004481 531 LQKLLLVGCSGSGTSTIFKQAK 552 (750)
Q Consensus 531 ~iKLLLLGaGESGKSTILKQMK 552 (750)
--.+.|+|..||||||++|-+-
T Consensus 26 G~~~~i~G~nGsGKSTLl~~l~ 47 (208)
T cd03268 26 GEIYGFLGPNGAGKTTTMKIIL 47 (208)
T ss_pred CcEEEEECCCCCCHHHHHHHHh
Confidence 4468899999999999999764
No 295
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=82.58 E-value=0.79 Score=45.57 Aligned_cols=25 Identities=32% Similarity=0.300 Sum_probs=20.4
Q ss_pred eeeEEEeecCCCCchhHHhHhhhhh
Q 004481 531 LQKLLLVGCSGSGTSTIFKQAKILY 555 (750)
Q Consensus 531 ~iKLLLLGaGESGKSTILKQMKILh 555 (750)
--.+.|+|..||||||++|-+-=++
T Consensus 24 Ge~~~l~G~nGsGKSTLl~~l~gl~ 48 (211)
T cd03298 24 GEITAIVGPSGSGKSTLLNLIAGFE 48 (211)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 4468999999999999999765444
No 296
>PRK06762 hypothetical protein; Provisional
Probab=82.57 E-value=0.81 Score=43.71 Aligned_cols=23 Identities=39% Similarity=0.491 Sum_probs=19.0
Q ss_pred eEEEeecCCCCchhHHhHhhhhh
Q 004481 533 KLLLVGCSGSGTSTIFKQAKILY 555 (750)
Q Consensus 533 KLLLLGaGESGKSTILKQMKILh 555 (750)
-++|-|..+|||||+.+++.-.+
T Consensus 4 li~i~G~~GsGKST~A~~L~~~l 26 (166)
T PRK06762 4 LIIIRGNSGSGKTTIAKQLQERL 26 (166)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 46788999999999999886444
No 297
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=82.54 E-value=0.78 Score=44.60 Aligned_cols=25 Identities=36% Similarity=0.404 Sum_probs=20.5
Q ss_pred eeeEEEeecCCCCchhHHhHhhhhh
Q 004481 531 LQKLLLVGCSGSGTSTIFKQAKILY 555 (750)
Q Consensus 531 ~iKLLLLGaGESGKSTILKQMKILh 555 (750)
--.+.|+|+.||||||++|-+-=++
T Consensus 28 Ge~~~i~G~nGsGKStLl~~l~G~~ 52 (173)
T cd03246 28 GESLAIIGPSGSGKSTLARLILGLL 52 (173)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhcc
Confidence 3468899999999999999875444
No 298
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=82.51 E-value=0.8 Score=45.73 Aligned_cols=26 Identities=38% Similarity=0.556 Sum_probs=21.1
Q ss_pred ceeeEEEeecCCCCchhHHhHhhhhh
Q 004481 530 TLQKLLLVGCSGSGTSTIFKQAKILY 555 (750)
Q Consensus 530 r~iKLLLLGaGESGKSTILKQMKILh 555 (750)
.--.+.|+|..||||||++|-+-=++
T Consensus 29 ~G~~~~i~G~nGsGKSTLl~~i~G~~ 54 (220)
T cd03245 29 AGEKVAIIGRVGSGKSTLLKLLAGLY 54 (220)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCc
Confidence 34568999999999999999876443
No 299
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=82.46 E-value=0.76 Score=49.10 Aligned_cols=20 Identities=35% Similarity=0.516 Sum_probs=17.3
Q ss_pred eEEEeecCCCCchhHHhHhh
Q 004481 533 KLLLVGCSGSGTSTIFKQAK 552 (750)
Q Consensus 533 KLLLLGaGESGKSTILKQMK 552 (750)
-+.|+|+.||||||++|-+=
T Consensus 32 ~~~iiGPNGaGKSTLlK~iL 51 (254)
T COG1121 32 ITALIGPNGAGKSTLLKAIL 51 (254)
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 47899999999999999643
No 300
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=82.41 E-value=0.8 Score=46.82 Aligned_cols=24 Identities=38% Similarity=0.418 Sum_probs=19.6
Q ss_pred eeeEEEeecCCCCchhHHhHhhhh
Q 004481 531 LQKLLLVGCSGSGTSTIFKQAKIL 554 (750)
Q Consensus 531 ~iKLLLLGaGESGKSTILKQMKIL 554 (750)
--.+.|+|..||||||++|-+-=+
T Consensus 29 Ge~~~i~G~nGsGKSTLl~~l~Gl 52 (241)
T PRK14250 29 GAIYTIVGPSGAGKSTLIKLINRL 52 (241)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 346899999999999999976433
No 301
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=82.38 E-value=0.81 Score=46.48 Aligned_cols=26 Identities=15% Similarity=0.226 Sum_probs=20.7
Q ss_pred ceeeEEEeecCCCCchhHHhHhhhhh
Q 004481 530 TLQKLLLVGCSGSGTSTIFKQAKILY 555 (750)
Q Consensus 530 r~iKLLLLGaGESGKSTILKQMKILh 555 (750)
.--.+.|+|..||||||++|-+-=++
T Consensus 27 ~Ge~~~l~G~nGsGKSTLl~~l~G~~ 52 (242)
T TIGR03411 27 PGELRVIIGPNGAGKTTMMDVITGKT 52 (242)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 34468999999999999999765443
No 302
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=82.33 E-value=0.81 Score=45.02 Aligned_cols=20 Identities=35% Similarity=0.700 Sum_probs=17.9
Q ss_pred eEEEeecCCCCchhHHhHhh
Q 004481 533 KLLLVGCSGSGTSTIFKQAK 552 (750)
Q Consensus 533 KLLLLGaGESGKSTILKQMK 552 (750)
|++|+|..+|||||++..+.
T Consensus 3 rimliG~~g~GKTTL~q~L~ 22 (143)
T PF10662_consen 3 RIMLIGPSGSGKTTLAQALN 22 (143)
T ss_pred eEEEECCCCCCHHHHHHHHc
Confidence 79999999999999987654
No 303
>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional
Probab=82.32 E-value=0.78 Score=47.02 Aligned_cols=22 Identities=27% Similarity=0.433 Sum_probs=18.9
Q ss_pred eeeEEEeecCCCCchhHHhHhh
Q 004481 531 LQKLLLVGCSGSGTSTIFKQAK 552 (750)
Q Consensus 531 ~iKLLLLGaGESGKSTILKQMK 552 (750)
--.+.|+|..||||||++|-+-
T Consensus 29 Ge~~~i~G~nGsGKSTLl~~i~ 50 (250)
T PRK14245 29 KSVVAFIGPSGCGKSTFLRLFN 50 (250)
T ss_pred CCEEEEECCCCCCHHHHHHHHh
Confidence 3458999999999999999874
No 304
>cd04133 Rop_like Rop subfamily. The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,
Probab=82.25 E-value=0.9 Score=44.80 Aligned_cols=21 Identities=19% Similarity=0.202 Sum_probs=19.4
Q ss_pred eeEEEeecCCCCchhHHhHhh
Q 004481 532 QKLLLVGCSGSGTSTIFKQAK 552 (750)
Q Consensus 532 iKLLLLGaGESGKSTILKQMK 552 (750)
+|+++||.+++|||+|++++.
T Consensus 2 ~kivv~G~~~vGKTsli~~~~ 22 (176)
T cd04133 2 IKCVTVGDGAVGKTCMLICYT 22 (176)
T ss_pred eEEEEECCCCCcHHHHHHHHh
Confidence 799999999999999999865
No 305
>PRK14737 gmk guanylate kinase; Provisional
Probab=82.22 E-value=0.8 Score=45.96 Aligned_cols=19 Identities=26% Similarity=0.518 Sum_probs=17.3
Q ss_pred EEEeecCCCCchhHHhHhh
Q 004481 534 LLLVGCSGSGTSTIFKQAK 552 (750)
Q Consensus 534 LLLLGaGESGKSTILKQMK 552 (750)
|.|.|++|||||||.|++.
T Consensus 7 ivl~GpsG~GK~tl~~~l~ 25 (186)
T PRK14737 7 FIISSVAGGGKSTIIQALL 25 (186)
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 6789999999999999984
No 306
>PLN00023 GTP-binding protein; Provisional
Probab=82.19 E-value=0.86 Score=50.45 Aligned_cols=24 Identities=29% Similarity=0.394 Sum_probs=21.2
Q ss_pred cceeeEEEeecCCCCchhHHhHhh
Q 004481 529 RTLQKLLLVGCSGSGTSTIFKQAK 552 (750)
Q Consensus 529 kr~iKLLLLGaGESGKSTILKQMK 552 (750)
...+||+|||.+++|||||++++.
T Consensus 19 ~~~iKIVLLGdsGVGKTSLI~rf~ 42 (334)
T PLN00023 19 CGQVRVLVVGDSGVGKSSLVHLIV 42 (334)
T ss_pred ccceEEEEECCCCCcHHHHHHHHh
Confidence 456899999999999999998864
No 307
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=82.17 E-value=0.83 Score=46.47 Aligned_cols=23 Identities=35% Similarity=0.502 Sum_probs=19.1
Q ss_pred eeEEEeecCCCCchhHHhHhhhh
Q 004481 532 QKLLLVGCSGSGTSTIFKQAKIL 554 (750)
Q Consensus 532 iKLLLLGaGESGKSTILKQMKIL 554 (750)
-.+.|+|..||||||++|-+-=+
T Consensus 12 e~~~i~G~nGsGKSTLl~~l~Gl 34 (230)
T TIGR01184 12 EFISLIGHSGCGKSTLLNLISGL 34 (230)
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 46899999999999999975433
No 308
>PF06414 Zeta_toxin: Zeta toxin; InterPro: IPR010488 This entry represents a domain originally identified in bacterial zeta toxin proteins, where it comprises the whole protein []. It has subsequently been found in a number of other proteins, such as polynucleotide kinase and 2',3'-cyclic-nucleotide 3'-phosphodiesterase. It appears to function as a kinase domain [, ].; GO: 0005524 ATP binding, 0016301 kinase activity; PDB: 2P5T_H 1GVN_B 3Q8X_D.
Probab=82.10 E-value=0.9 Score=45.32 Aligned_cols=40 Identities=23% Similarity=0.316 Sum_probs=24.2
Q ss_pred cceeeEEEeecCCCCchhHHhHhhhhh-cCCC---CCHHHHhhhh
Q 004481 529 RTLQKLLLVGCSGSGTSTIFKQAKILY-KAVP---FSDDEHENIK 569 (750)
Q Consensus 529 kr~iKLLLLGaGESGKSTILKQMKILh-~~~G---FSeeER~~~K 569 (750)
.+..=++|-|+.||||||+..++.--+ . ++ ++.++.+.+-
T Consensus 13 ~~P~~~i~aG~~GsGKSt~~~~~~~~~~~-~~~v~i~~D~~r~~~ 56 (199)
T PF06414_consen 13 EKPTLIIIAGQPGSGKSTLARQLLEEFGG-GGIVVIDADEFRQFH 56 (199)
T ss_dssp SS-EEEEEES-TTSTTHHHHHHHHHHT-T-T-SEEE-GGGGGGGS
T ss_pred cCCEEEEEeCCCCCCHHHHHHHhhhhccC-CCeEEEehHHHHHhc
Confidence 344445666999999999999887654 3 22 3455655443
No 309
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=82.09 E-value=0.86 Score=45.06 Aligned_cols=24 Identities=17% Similarity=0.362 Sum_probs=19.9
Q ss_pred eeEEEeecCCCCchhHHhHhhhhh
Q 004481 532 QKLLLVGCSGSGTSTIFKQAKILY 555 (750)
Q Consensus 532 iKLLLLGaGESGKSTILKQMKILh 555 (750)
-.+.|+|..||||||++|-+-=++
T Consensus 27 e~~~l~G~nGsGKSTLl~~l~G~~ 50 (195)
T PRK13541 27 AITYIKGANGCGKSSLLRMIAGIM 50 (195)
T ss_pred cEEEEECCCCCCHHHHHHHHhcCC
Confidence 368999999999999999765443
No 310
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=82.08 E-value=0.83 Score=47.65 Aligned_cols=25 Identities=20% Similarity=0.206 Sum_probs=20.3
Q ss_pred eeeEEEeecCCCCchhHHhHhhhhh
Q 004481 531 LQKLLLVGCSGSGTSTIFKQAKILY 555 (750)
Q Consensus 531 ~iKLLLLGaGESGKSTILKQMKILh 555 (750)
--.+.|+|..||||||++|-+-=++
T Consensus 33 Ge~~~i~G~nGsGKSTLl~~l~Gl~ 57 (269)
T PRK11831 33 GKITAIMGPSGIGKTTLLRLIGGQI 57 (269)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3468999999999999999765443
No 311
>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional
Probab=82.05 E-value=0.84 Score=46.86 Aligned_cols=26 Identities=27% Similarity=0.359 Sum_probs=20.8
Q ss_pred ceeeEEEeecCCCCchhHHhHhhhhh
Q 004481 530 TLQKLLLVGCSGSGTSTIFKQAKILY 555 (750)
Q Consensus 530 r~iKLLLLGaGESGKSTILKQMKILh 555 (750)
.--.+.|+|..||||||++|-+-=++
T Consensus 32 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 57 (254)
T PRK14273 32 KNSITALIGPSGCGKSTFLRTLNRMN 57 (254)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccc
Confidence 34568999999999999999765443
No 312
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=81.99 E-value=0.81 Score=46.79 Aligned_cols=25 Identities=32% Similarity=0.437 Sum_probs=20.3
Q ss_pred eeeEEEeecCCCCchhHHhHhhhhh
Q 004481 531 LQKLLLVGCSGSGTSTIFKQAKILY 555 (750)
Q Consensus 531 ~iKLLLLGaGESGKSTILKQMKILh 555 (750)
--.+.|+|..||||||++|-+-=++
T Consensus 27 Ge~~~i~G~nGsGKSTLl~~l~G~~ 51 (247)
T TIGR00972 27 NQVTALIGPSGCGKSTLLRSLNRMN 51 (247)
T ss_pred CCEEEEECCCCCCHHHHHHHHhccC
Confidence 4458899999999999999875443
No 313
>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=81.95 E-value=0.8 Score=48.56 Aligned_cols=42 Identities=21% Similarity=0.393 Sum_probs=27.5
Q ss_pred EEEeecCCCCchhHHhHhh---------hhhc---CCCCCHHHHhhhhHHHHHH
Q 004481 534 LLLVGCSGSGTSTIFKQAK---------ILYK---AVPFSDDEHENIKLKIQSN 575 (750)
Q Consensus 534 LLLLGaGESGKSTILKQMK---------ILh~---~~GFSeeER~~~K~IIqsN 575 (750)
+-+||+.|+||||++|++- +.+. .+.+...|+...|.+.-.|
T Consensus 30 ~ailGPNGAGKSTlLk~LsGel~p~~G~v~~~g~~l~~~~~~~lA~~raVlpQ~ 83 (259)
T COG4559 30 LAILGPNGAGKSTLLKALSGELSPDSGEVTLNGVPLNSWPPEELARHRAVLPQN 83 (259)
T ss_pred EEEECCCCccHHHHHHHhhCccCCCCCeEeeCCcChhhCCHHHHHHHhhhcccC
Confidence 5689999999999999864 1111 0235566666666655544
No 314
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=81.94 E-value=0.84 Score=46.99 Aligned_cols=19 Identities=37% Similarity=0.590 Sum_probs=17.3
Q ss_pred EEEeecCCCCchhHHhHhh
Q 004481 534 LLLVGCSGSGTSTIFKQAK 552 (750)
Q Consensus 534 LLLLGaGESGKSTILKQMK 552 (750)
|+|.|.++|||||+.+++.
T Consensus 2 Ivl~G~pGSGKST~a~~La 20 (249)
T TIGR03574 2 IILTGLPGVGKSTFSKELA 20 (249)
T ss_pred EEEEcCCCCCHHHHHHHHH
Confidence 6889999999999999875
No 315
>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional
Probab=81.89 E-value=0.82 Score=46.84 Aligned_cols=26 Identities=31% Similarity=0.413 Sum_probs=20.7
Q ss_pred ceeeEEEeecCCCCchhHHhHhhhhh
Q 004481 530 TLQKLLLVGCSGSGTSTIFKQAKILY 555 (750)
Q Consensus 530 r~iKLLLLGaGESGKSTILKQMKILh 555 (750)
.--.+.|+|..||||||++|-+-=++
T Consensus 29 ~Ge~~~l~G~nGsGKSTLl~~l~G~~ 54 (253)
T PRK14267 29 QNGVFALMGPSGCGKSTLLRTFNRLL 54 (253)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccC
Confidence 33457999999999999999875443
No 316
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=81.88 E-value=0.83 Score=45.83 Aligned_cols=17 Identities=41% Similarity=0.659 Sum_probs=15.7
Q ss_pred EEEeecCCCCchhHHhH
Q 004481 534 LLLVGCSGSGTSTIFKQ 550 (750)
Q Consensus 534 LLLLGaGESGKSTILKQ 550 (750)
+|+.|+.||||||+++.
T Consensus 4 ilI~GptGSGKTTll~~ 20 (198)
T cd01131 4 VLVTGPTGSGKSTTLAA 20 (198)
T ss_pred EEEECCCCCCHHHHHHH
Confidence 68899999999999986
No 317
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=81.87 E-value=0.81 Score=50.69 Aligned_cols=48 Identities=23% Similarity=0.301 Sum_probs=33.1
Q ss_pred EEEeecCCCCchhHHhHhhhhhcC------------CCCCHHHHh------hhh----HHHHHHHHHHHH
Q 004481 534 LLLVGCSGSGTSTIFKQAKILYKA------------VPFSDDEHE------NIK----LKIQSNAYGYLG 581 (750)
Q Consensus 534 LLLLGaGESGKSTILKQMKILh~~------------~GFSeeER~------~~K----~IIqsNIi~smk 581 (750)
+.|||++||||||+|+-+-=|..+ +.+.+++|. +|- ..|+.||--.|+
T Consensus 32 ~vllGPSGcGKSTlLr~IAGLe~~~~G~I~i~g~~vt~l~P~~R~iamVFQ~yALyPhmtV~~Niaf~Lk 101 (338)
T COG3839 32 VVLLGPSGCGKSTLLRMIAGLEEPTSGEILIDGRDVTDLPPEKRGIAMVFQNYALYPHMTVYENIAFGLK 101 (338)
T ss_pred EEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhHCCEEEEeCCccccCCCcHHHHhhhhhh
Confidence 689999999999999988766654 335566663 232 356677655554
No 318
>PLN02200 adenylate kinase family protein
Probab=81.83 E-value=0.94 Score=47.10 Aligned_cols=25 Identities=24% Similarity=0.319 Sum_probs=20.7
Q ss_pred hcceeeEEEeecCCCCchhHHhHhh
Q 004481 528 RRTLQKLLLVGCSGSGTSTIFKQAK 552 (750)
Q Consensus 528 ~kr~iKLLLLGaGESGKSTILKQMK 552 (750)
.+....|+|+|+.||||||+.+++.
T Consensus 40 ~~~~~ii~I~G~PGSGKsT~a~~La 64 (234)
T PLN02200 40 EKTPFITFVLGGPGSGKGTQCEKIV 64 (234)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHH
Confidence 4455778999999999999988764
No 319
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=81.81 E-value=0.84 Score=45.82 Aligned_cols=26 Identities=35% Similarity=0.416 Sum_probs=20.9
Q ss_pred ceeeEEEeecCCCCchhHHhHhhhhh
Q 004481 530 TLQKLLLVGCSGSGTSTIFKQAKILY 555 (750)
Q Consensus 530 r~iKLLLLGaGESGKSTILKQMKILh 555 (750)
.--.+.|+|..||||||++|-+--++
T Consensus 33 ~Ge~~~l~G~nGsGKSTLl~~i~G~~ 58 (224)
T TIGR02324 33 AGECVALSGPSGAGKSTLLKSLYANY 58 (224)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 34568999999999999999765444
No 320
>PRK13651 cobalt transporter ATP-binding subunit; Provisional
Probab=81.78 E-value=0.84 Score=49.02 Aligned_cols=26 Identities=23% Similarity=0.436 Sum_probs=21.3
Q ss_pred ceeeEEEeecCCCCchhHHhHhhhhh
Q 004481 530 TLQKLLLVGCSGSGTSTIFKQAKILY 555 (750)
Q Consensus 530 r~iKLLLLGaGESGKSTILKQMKILh 555 (750)
+--.+.|+|+.||||||++|-+-=++
T Consensus 32 ~Ge~v~iiG~nGsGKSTLl~~L~Gl~ 57 (305)
T PRK13651 32 QGEFIAIIGQTGSGKTTFIEHLNALL 57 (305)
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 34578999999999999999876444
No 321
>PRK00625 shikimate kinase; Provisional
Probab=81.77 E-value=0.89 Score=45.31 Aligned_cols=20 Identities=20% Similarity=0.345 Sum_probs=18.2
Q ss_pred eEEEeecCCCCchhHHhHhh
Q 004481 533 KLLLVGCSGSGTSTIFKQAK 552 (750)
Q Consensus 533 KLLLLGaGESGKSTILKQMK 552 (750)
.|+|.|..||||||+.|++.
T Consensus 2 ~I~LiG~pGsGKTT~~k~La 21 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALA 21 (173)
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 58999999999999999874
No 322
>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional
Probab=81.74 E-value=0.87 Score=46.92 Aligned_cols=26 Identities=38% Similarity=0.325 Sum_probs=21.0
Q ss_pred ceeeEEEeecCCCCchhHHhHhhhhh
Q 004481 530 TLQKLLLVGCSGSGTSTIFKQAKILY 555 (750)
Q Consensus 530 r~iKLLLLGaGESGKSTILKQMKILh 555 (750)
.--.+.|+|..||||||++|-+-=++
T Consensus 28 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 53 (254)
T PRK10418 28 RGRVLALVGGSGSGKSLTCAAALGIL 53 (254)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 34468999999999999999865444
No 323
>TIGR01526 nadR_NMN_Atrans nicotinamide-nucleotide adenylyltransferase, NadR type. E. coli NadR has also been found to regulate the import of its substrate, nicotinamide ribonucleotide, but it is not known if the other members of this model share that activity.
Probab=81.73 E-value=0.91 Score=49.44 Aligned_cols=29 Identities=14% Similarity=0.398 Sum_probs=24.5
Q ss_pred eeeEEEeecCCCCchhHHhHhhhhhcCCCC
Q 004481 531 LQKLLLVGCSGSGTSTIFKQAKILYKAVPF 560 (750)
Q Consensus 531 ~iKLLLLGaGESGKSTILKQMKILh~~~GF 560 (750)
..+++|+|+.++||||+++++--+++ ..+
T Consensus 162 ~~~~~~~G~~~~gkstl~~~l~~~~~-~~~ 190 (325)
T TIGR01526 162 VKTVAILGGESTGKSTLVNKLAAVFN-TTS 190 (325)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhhC-CCE
Confidence 34899999999999999999888776 444
No 324
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=81.72 E-value=0.87 Score=44.17 Aligned_cols=26 Identities=46% Similarity=0.588 Sum_probs=20.8
Q ss_pred ceeeEEEeecCCCCchhHHhHhhhhh
Q 004481 530 TLQKLLLVGCSGSGTSTIFKQAKILY 555 (750)
Q Consensus 530 r~iKLLLLGaGESGKSTILKQMKILh 555 (750)
.--.+.|+|+.||||||++|-+-=++
T Consensus 27 ~G~~~~l~G~nGsGKstLl~~i~G~~ 52 (171)
T cd03228 27 PGEKVAIVGPSGSGKSTLLKLLLRLY 52 (171)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHcCC
Confidence 34467999999999999999775443
No 325
>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Probab=81.72 E-value=0.95 Score=45.71 Aligned_cols=21 Identities=38% Similarity=0.597 Sum_probs=18.8
Q ss_pred eEEEeecCCCCchhHHhHhhh
Q 004481 533 KLLLVGCSGSGTSTIFKQAKI 553 (750)
Q Consensus 533 KLLLLGaGESGKSTILKQMKI 553 (750)
.++++|+.||||||+++.+..
T Consensus 24 ~~~i~G~NGsGKTTLl~ai~~ 44 (204)
T cd03240 24 LTLIVGQNGAGKTTIIEALKY 44 (204)
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 679999999999999999763
No 326
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=81.69 E-value=0.89 Score=46.02 Aligned_cols=25 Identities=36% Similarity=0.416 Sum_probs=20.1
Q ss_pred ceeeEEEeecCCCCchhHHhHhhhh
Q 004481 530 TLQKLLLVGCSGSGTSTIFKQAKIL 554 (750)
Q Consensus 530 r~iKLLLLGaGESGKSTILKQMKIL 554 (750)
.--.+.|+|+.||||||++|-+-=+
T Consensus 32 ~Ge~~~i~G~nGsGKSTLl~~l~G~ 56 (225)
T PRK10247 32 AGEFKLITGPSGCGKSTLLKIVASL 56 (225)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcc
Confidence 3446899999999999999975433
No 327
>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....
Probab=81.68 E-value=0.95 Score=45.82 Aligned_cols=20 Identities=35% Similarity=0.600 Sum_probs=17.7
Q ss_pred eeEEEeecCCCCchhHHhHh
Q 004481 532 QKLLLVGCSGSGTSTIFKQA 551 (750)
Q Consensus 532 iKLLLLGaGESGKSTILKQM 551 (750)
++|||||..||||||+..-+
T Consensus 1 l~IlllG~tGsGKSs~~N~i 20 (212)
T PF04548_consen 1 LRILLLGKTGSGKSSLGNSI 20 (212)
T ss_dssp EEEEEECSTTSSHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHH
Confidence 47999999999999988764
No 328
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=81.67 E-value=0.89 Score=46.17 Aligned_cols=26 Identities=35% Similarity=0.521 Sum_probs=20.8
Q ss_pred ceeeEEEeecCCCCchhHHhHhhhhh
Q 004481 530 TLQKLLLVGCSGSGTSTIFKQAKILY 555 (750)
Q Consensus 530 r~iKLLLLGaGESGKSTILKQMKILh 555 (750)
.--.+.|+|..||||||++|-+-=++
T Consensus 26 ~Ge~~~i~G~nGsGKSTLl~~l~G~~ 51 (236)
T TIGR03864 26 PGEFVALLGPNGAGKSTLFSLLTRLY 51 (236)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCc
Confidence 34568899999999999999765443
No 329
>PRK14240 phosphate transporter ATP-binding protein; Provisional
Probab=81.66 E-value=0.89 Score=46.49 Aligned_cols=22 Identities=36% Similarity=0.481 Sum_probs=19.0
Q ss_pred eeeEEEeecCCCCchhHHhHhh
Q 004481 531 LQKLLLVGCSGSGTSTIFKQAK 552 (750)
Q Consensus 531 ~iKLLLLGaGESGKSTILKQMK 552 (750)
--.+.|+|..||||||++|-+-
T Consensus 29 Ge~~~i~G~nGsGKSTLl~~i~ 50 (250)
T PRK14240 29 NQVTALIGPSGCGKSTFLRTLN 50 (250)
T ss_pred CCEEEEECCCCCCHHHHHHHHh
Confidence 3458999999999999999875
No 330
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=81.66 E-value=0.87 Score=47.89 Aligned_cols=26 Identities=31% Similarity=0.358 Sum_probs=21.0
Q ss_pred ceeeEEEeecCCCCchhHHhHhhhhh
Q 004481 530 TLQKLLLVGCSGSGTSTIFKQAKILY 555 (750)
Q Consensus 530 r~iKLLLLGaGESGKSTILKQMKILh 555 (750)
.--.+.|+|+.||||||++|-+-=++
T Consensus 32 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 57 (279)
T PRK13650 32 QGEWLSIIGHNGSGKSTTVRLIDGLL 57 (279)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 34468999999999999999876444
No 331
>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional
Probab=81.64 E-value=0.84 Score=47.41 Aligned_cols=22 Identities=32% Similarity=0.463 Sum_probs=18.9
Q ss_pred eeeEEEeecCCCCchhHHhHhh
Q 004481 531 LQKLLLVGCSGSGTSTIFKQAK 552 (750)
Q Consensus 531 ~iKLLLLGaGESGKSTILKQMK 552 (750)
--.+.|+|..||||||++|-+-
T Consensus 47 Ge~~~i~G~nGsGKSTLl~~l~ 68 (268)
T PRK14248 47 HAVTALIGPSGCGKSTFLRSIN 68 (268)
T ss_pred CCEEEEECCCCCCHHHHHHHHH
Confidence 3458999999999999999764
No 332
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=81.63 E-value=0.89 Score=46.49 Aligned_cols=26 Identities=35% Similarity=0.377 Sum_probs=20.8
Q ss_pred ceeeEEEeecCCCCchhHHhHhhhhh
Q 004481 530 TLQKLLLVGCSGSGTSTIFKQAKILY 555 (750)
Q Consensus 530 r~iKLLLLGaGESGKSTILKQMKILh 555 (750)
.--.+.|+|..||||||++|-+-=++
T Consensus 28 ~Ge~~~i~G~nGsGKSTLl~~i~G~~ 53 (250)
T PRK14247 28 DNTITALMGPSGSGKSTLLRVFNRLI 53 (250)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccC
Confidence 34468999999999999999765443
No 333
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=81.63 E-value=0.91 Score=45.21 Aligned_cols=22 Identities=14% Similarity=0.336 Sum_probs=18.7
Q ss_pred eeeEEEeecCCCCchhHHhHhh
Q 004481 531 LQKLLLVGCSGSGTSTIFKQAK 552 (750)
Q Consensus 531 ~iKLLLLGaGESGKSTILKQMK 552 (750)
--.+.|+|..||||||++|-+-
T Consensus 27 Ge~~~l~G~nGsGKSTLl~~l~ 48 (204)
T PRK13538 27 GELVQIEGPNGAGKTSLLRILA 48 (204)
T ss_pred CcEEEEECCCCCCHHHHHHHHh
Confidence 3468999999999999999754
No 334
>PRK01184 hypothetical protein; Provisional
Probab=81.63 E-value=0.96 Score=44.03 Aligned_cols=20 Identities=35% Similarity=0.468 Sum_probs=16.6
Q ss_pred eEEEeecCCCCchhHHhHhh
Q 004481 533 KLLLVGCSGSGTSTIFKQAK 552 (750)
Q Consensus 533 KLLLLGaGESGKSTILKQMK 552 (750)
.|+|.|..+|||||+.+.++
T Consensus 3 ~i~l~G~~GsGKsT~a~~~~ 22 (184)
T PRK01184 3 IIGVVGMPGSGKGEFSKIAR 22 (184)
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 57899999999999876433
No 335
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=81.58 E-value=0.89 Score=46.04 Aligned_cols=24 Identities=29% Similarity=0.432 Sum_probs=20.0
Q ss_pred eeEEEeecCCCCchhHHhHhhhhh
Q 004481 532 QKLLLVGCSGSGTSTIFKQAKILY 555 (750)
Q Consensus 532 iKLLLLGaGESGKSTILKQMKILh 555 (750)
-.+.|+|..||||||++|-+-=++
T Consensus 7 e~~~l~G~nGsGKSTLl~~l~G~~ 30 (223)
T TIGR03771 7 ELLGLLGPNGAGKTTLLRAILGLI 30 (223)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC
Confidence 468999999999999999765443
No 336
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=81.57 E-value=0.93 Score=45.05 Aligned_cols=26 Identities=23% Similarity=0.223 Sum_probs=21.0
Q ss_pred ceeeEEEeecCCCCchhHHhHhhhhh
Q 004481 530 TLQKLLLVGCSGSGTSTIFKQAKILY 555 (750)
Q Consensus 530 r~iKLLLLGaGESGKSTILKQMKILh 555 (750)
.--.+.|+|..||||||++|-+-=++
T Consensus 34 ~Ge~~~l~G~nGsGKStLl~~i~Gl~ 59 (194)
T cd03213 34 PGELTAIMGPSGAGKSTLLNALAGRR 59 (194)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 34568999999999999999765444
No 337
>KOG2355 consensus Predicted ABC-type transport, ATPase component/CCR4 associated factor [General function prediction only; Transcription]
Probab=81.53 E-value=0.9 Score=48.15 Aligned_cols=22 Identities=36% Similarity=0.611 Sum_probs=18.7
Q ss_pred ceeeEEEeecCCCCchhHHhHh
Q 004481 530 TLQKLLLVGCSGSGTSTIFKQA 551 (750)
Q Consensus 530 r~iKLLLLGaGESGKSTILKQM 551 (750)
.--+-||+|+.|+||||++|-+
T Consensus 39 ~gsRcLlVGaNGaGKtTlLKiL 60 (291)
T KOG2355|consen 39 AGSRCLLVGANGAGKTTLLKIL 60 (291)
T ss_pred CCceEEEEecCCCchhhhHHHh
Confidence 3456899999999999999864
No 338
>PRK08356 hypothetical protein; Provisional
Probab=81.52 E-value=0.91 Score=45.13 Aligned_cols=20 Identities=25% Similarity=0.253 Sum_probs=18.1
Q ss_pred eEEEeecCCCCchhHHhHhh
Q 004481 533 KLLLVGCSGSGTSTIFKQAK 552 (750)
Q Consensus 533 KLLLLGaGESGKSTILKQMK 552 (750)
-++|+|+.+|||||+.++++
T Consensus 7 ~i~~~G~~gsGK~t~a~~l~ 26 (195)
T PRK08356 7 IVGVVGKIAAGKTTVAKFFE 26 (195)
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 47899999999999999985
No 339
>cd04142 RRP22 RRP22 subfamily. RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.
Probab=81.51 E-value=0.9 Score=45.43 Aligned_cols=20 Identities=25% Similarity=0.576 Sum_probs=18.5
Q ss_pred eeEEEeecCCCCchhHHhHh
Q 004481 532 QKLLLVGCSGSGTSTIFKQA 551 (750)
Q Consensus 532 iKLLLLGaGESGKSTILKQM 551 (750)
+||++||..++|||||+.++
T Consensus 1 ~kI~ivG~~~vGKTsLi~~~ 20 (198)
T cd04142 1 VRVAVLGAPGVGKTAIVRQF 20 (198)
T ss_pred CEEEEECCCCCcHHHHHHHH
Confidence 58999999999999999875
No 340
>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional
Probab=81.45 E-value=0.92 Score=46.43 Aligned_cols=24 Identities=29% Similarity=0.407 Sum_probs=19.7
Q ss_pred eeeEEEeecCCCCchhHHhHhhhh
Q 004481 531 LQKLLLVGCSGSGTSTIFKQAKIL 554 (750)
Q Consensus 531 ~iKLLLLGaGESGKSTILKQMKIL 554 (750)
--.+.|+|..||||||++|-+-=+
T Consensus 30 Ge~~~i~G~nGsGKSTLl~~l~Gl 53 (251)
T PRK14251 30 KELTALIGPSGCGKSTFLRCLNRM 53 (251)
T ss_pred CCEEEEECCCCCCHHHHHHHHhhc
Confidence 345899999999999999976533
No 341
>PF04670 Gtr1_RagA: Gtr1/RagA G protein conserved region; InterPro: IPR006762 GTR1 was first identified in Saccharomyces cerevisiae (Baker's yeast) as a suppressor of a mutation in RCC1. RCC1 catalyzes guanine nucleotide exchange on Ran, a well characterised nuclear Ras-like small G protein that plays an essential role in the import and export of proteins and RNAs across the nuclear membrane through the nuclear pore complex. RCC1 is located inside the nucleus, bound to chromatin. The concentration of GTP within the cell is ~30 times higher than the concentration of GDP, thus resulting in the preferential production of the GTP form of Ran by RCC1 within the nucleus. Gtr1p is located within both the cytoplasm and the nucleus and has been reported to play a role in cell growth. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1 and Rag A and Gtr1p belong to the sixth subfamily of the Ras-like small GTPase superfamily []. ; GO: 0005525 GTP binding, 0005634 nucleus, 0005737 cytoplasm; PDB: 3R7W_B 2Q3F_B 3LLU_A.
Probab=81.44 E-value=0.96 Score=47.48 Aligned_cols=18 Identities=39% Similarity=0.541 Sum_probs=16.5
Q ss_pred eEEEeecCCCCchhHHhH
Q 004481 533 KLLLVGCSGSGTSTIFKQ 550 (750)
Q Consensus 533 KLLLLGaGESGKSTILKQ 550 (750)
||||+|..+||||++.+.
T Consensus 1 KiLLmG~~~SGKTSi~~v 18 (232)
T PF04670_consen 1 KILLMGPRRSGKTSIRSV 18 (232)
T ss_dssp EEEEEESTTSSHHHHHHH
T ss_pred CEEEEcCCCCChhhHHHH
Confidence 899999999999998764
No 342
>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins. GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.
Probab=81.44 E-value=0.91 Score=46.83 Aligned_cols=21 Identities=29% Similarity=0.480 Sum_probs=18.9
Q ss_pred eEEEeecCCCCchhHHhHhhh
Q 004481 533 KLLLVGCSGSGTSTIFKQAKI 553 (750)
Q Consensus 533 KLLLLGaGESGKSTILKQMKI 553 (750)
|++|+|..++||||+++++.-
T Consensus 2 ~v~lvG~~~~GKStLl~~Ltg 22 (233)
T cd01896 2 RVALVGFPSVGKSTLLSKLTN 22 (233)
T ss_pred EEEEECCCCCCHHHHHHHHHC
Confidence 789999999999999998753
No 343
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=81.43 E-value=0.93 Score=45.15 Aligned_cols=25 Identities=32% Similarity=0.240 Sum_probs=20.3
Q ss_pred ceeeEEEeecCCCCchhHHhHhhhh
Q 004481 530 TLQKLLLVGCSGSGTSTIFKQAKIL 554 (750)
Q Consensus 530 r~iKLLLLGaGESGKSTILKQMKIL 554 (750)
.--.+.|+|..||||||++|-+-=+
T Consensus 25 ~Ge~~~i~G~nGsGKStLl~~l~G~ 49 (200)
T cd03217 25 KGEVHALMGPNGSGKSTLAKTIMGH 49 (200)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCC
Confidence 4456899999999999999975443
No 344
>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional
Probab=81.42 E-value=0.87 Score=46.70 Aligned_cols=25 Identities=24% Similarity=0.386 Sum_probs=20.7
Q ss_pred eeeEEEeecCCCCchhHHhHhhhhh
Q 004481 531 LQKLLLVGCSGSGTSTIFKQAKILY 555 (750)
Q Consensus 531 ~iKLLLLGaGESGKSTILKQMKILh 555 (750)
--.+.|+|..||||||++|-|-=++
T Consensus 30 Ge~~~i~G~nGsGKSTLl~~l~Gl~ 54 (252)
T PRK14256 30 NSVTAIIGPSGCGKSTVLRSINRMH 54 (252)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhcc
Confidence 3458999999999999999876554
No 345
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=81.41 E-value=0.91 Score=47.18 Aligned_cols=26 Identities=31% Similarity=0.290 Sum_probs=21.2
Q ss_pred ceeeEEEeecCCCCchhHHhHhhhhh
Q 004481 530 TLQKLLLVGCSGSGTSTIFKQAKILY 555 (750)
Q Consensus 530 r~iKLLLLGaGESGKSTILKQMKILh 555 (750)
.--.+.|+|..||||||++|-|-=++
T Consensus 36 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 61 (265)
T PRK10575 36 AGKVTGLIGHNGSGKSTLLKMLGRHQ 61 (265)
T ss_pred CCCEEEEECCCCCCHHHHHHHHcCCC
Confidence 44578999999999999999765444
No 346
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=81.40 E-value=0.93 Score=45.57 Aligned_cols=25 Identities=36% Similarity=0.360 Sum_probs=20.7
Q ss_pred ceeeEEEeecCCCCchhHHhHhhhh
Q 004481 530 TLQKLLLVGCSGSGTSTIFKQAKIL 554 (750)
Q Consensus 530 r~iKLLLLGaGESGKSTILKQMKIL 554 (750)
.--.+.|+|+.||||||++|-|-=+
T Consensus 39 ~Ge~~~i~G~nGsGKSTLl~~l~Gl 63 (226)
T cd03248 39 PGEVTALVGPSGSGKSTVVALLENF 63 (226)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 4557899999999999999976544
No 347
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=81.39 E-value=0.91 Score=47.57 Aligned_cols=27 Identities=41% Similarity=0.268 Sum_probs=21.7
Q ss_pred ceeeEEEeecCCCCchhHHhHhhhhhc
Q 004481 530 TLQKLLLVGCSGSGTSTIFKQAKILYK 556 (750)
Q Consensus 530 r~iKLLLLGaGESGKSTILKQMKILh~ 556 (750)
.--.+.|+|+.||||||++|-+-=++.
T Consensus 25 ~Ge~~~IvG~nGsGKSTLlk~l~Gl~~ 51 (255)
T cd03236 25 EGQVLGLVGPNGIGKSTALKILAGKLK 51 (255)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCcC
Confidence 344789999999999999997655554
No 348
>PRK14239 phosphate transporter ATP-binding protein; Provisional
Probab=81.36 E-value=0.92 Score=46.33 Aligned_cols=22 Identities=36% Similarity=0.528 Sum_probs=19.1
Q ss_pred eeeEEEeecCCCCchhHHhHhh
Q 004481 531 LQKLLLVGCSGSGTSTIFKQAK 552 (750)
Q Consensus 531 ~iKLLLLGaGESGKSTILKQMK 552 (750)
--.+.|+|..||||||++|-+-
T Consensus 31 Ge~~~i~G~nGsGKSTLl~~l~ 52 (252)
T PRK14239 31 NEITALIGPSGSGKSTLLRSIN 52 (252)
T ss_pred CcEEEEECCCCCCHHHHHHHHh
Confidence 3458999999999999999874
No 349
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=81.35 E-value=0.92 Score=46.14 Aligned_cols=25 Identities=24% Similarity=0.174 Sum_probs=20.4
Q ss_pred ceeeEEEeecCCCCchhHHhHhhhh
Q 004481 530 TLQKLLLVGCSGSGTSTIFKQAKIL 554 (750)
Q Consensus 530 r~iKLLLLGaGESGKSTILKQMKIL 554 (750)
.--.+.|+|..||||||++|-+-=+
T Consensus 26 ~Ge~~~i~G~nGsGKSTLl~~l~Gl 50 (248)
T PRK09580 26 PGEVHAIMGPNGSGKSTLSATLAGR 50 (248)
T ss_pred CCCEEEEECCCCCCHHHHHHHHcCC
Confidence 3456899999999999999976544
No 350
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=81.34 E-value=0.91 Score=46.94 Aligned_cols=25 Identities=28% Similarity=0.413 Sum_probs=20.6
Q ss_pred ceeeEEEeecCCCCchhHHhHhhhh
Q 004481 530 TLQKLLLVGCSGSGTSTIFKQAKIL 554 (750)
Q Consensus 530 r~iKLLLLGaGESGKSTILKQMKIL 554 (750)
.--.+.|+|..||||||++|-+-=+
T Consensus 38 ~Ge~~~i~G~nGsGKSTLl~~l~Gl 62 (260)
T PRK10744 38 KNQVTAFIGPSGCGKSTLLRTFNRM 62 (260)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcc
Confidence 4456899999999999999986544
No 351
>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Probab=81.32 E-value=1 Score=43.51 Aligned_cols=25 Identities=28% Similarity=0.426 Sum_probs=21.0
Q ss_pred eeEEEeecCCCCchhHHhHhhhhhc
Q 004481 532 QKLLLVGCSGSGTSTIFKQAKILYK 556 (750)
Q Consensus 532 iKLLLLGaGESGKSTILKQMKILh~ 556 (750)
-.+++.|+.+|||||++|++.++-.
T Consensus 22 ~~~~i~G~NgsGKS~~l~~i~~~~~ 46 (162)
T cd03227 22 SLTIITGPNGSGKSTILDAIGLALG 46 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHH
Confidence 3578899999999999999776654
No 352
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=81.31 E-value=0.94 Score=45.52 Aligned_cols=25 Identities=28% Similarity=0.336 Sum_probs=20.4
Q ss_pred ceeeEEEeecCCCCchhHHhHhhhh
Q 004481 530 TLQKLLLVGCSGSGTSTIFKQAKIL 554 (750)
Q Consensus 530 r~iKLLLLGaGESGKSTILKQMKIL 554 (750)
.--.+.|+|..||||||++|-+-=+
T Consensus 25 ~Ge~~~i~G~nGsGKSTLl~~l~G~ 49 (223)
T TIGR03740 25 KNSVYGLLGPNGAGKSTLLKMITGI 49 (223)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCC
Confidence 4456899999999999999976544
No 353
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=81.28 E-value=0.94 Score=46.01 Aligned_cols=26 Identities=27% Similarity=0.515 Sum_probs=20.7
Q ss_pred ceeeEEEeecCCCCchhHHhHhhhhh
Q 004481 530 TLQKLLLVGCSGSGTSTIFKQAKILY 555 (750)
Q Consensus 530 r~iKLLLLGaGESGKSTILKQMKILh 555 (750)
.--.+.|+|..||||||++|-+-=++
T Consensus 47 ~Ge~~~i~G~nGsGKSTLl~~l~G~~ 72 (224)
T cd03220 47 RGERIGLIGRNGAGKSTLLRLLAGIY 72 (224)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 34468999999999999999765443
No 354
>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional
Probab=81.27 E-value=0.93 Score=46.86 Aligned_cols=25 Identities=28% Similarity=0.365 Sum_probs=20.4
Q ss_pred eeeEEEeecCCCCchhHHhHhhhhh
Q 004481 531 LQKLLLVGCSGSGTSTIFKQAKILY 555 (750)
Q Consensus 531 ~iKLLLLGaGESGKSTILKQMKILh 555 (750)
--.+.|+|..||||||++|-+-=++
T Consensus 33 Ge~~~l~G~nGsGKSTLlk~l~Gl~ 57 (259)
T PRK14260 33 NKVTAIIGPSGCGKSTFIKTLNRIS 57 (259)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhc
Confidence 4468999999999999999875443
No 355
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=81.24 E-value=0.92 Score=48.26 Aligned_cols=24 Identities=21% Similarity=0.337 Sum_probs=19.6
Q ss_pred eeeEEEeecCCCCchhHHhHhhhh
Q 004481 531 LQKLLLVGCSGSGTSTIFKQAKIL 554 (750)
Q Consensus 531 ~iKLLLLGaGESGKSTILKQMKIL 554 (750)
--.+.|+|+.||||||++|-+-=+
T Consensus 19 Ge~~~l~G~NGaGKSTLl~~l~Gl 42 (302)
T TIGR01188 19 GEVFGFLGPNGAGKTTTIRMLTTL 42 (302)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCC
Confidence 345789999999999999976543
No 356
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=81.18 E-value=0.93 Score=47.78 Aligned_cols=24 Identities=29% Similarity=0.432 Sum_probs=19.7
Q ss_pred eeeEEEeecCCCCchhHHhHhhhh
Q 004481 531 LQKLLLVGCSGSGTSTIFKQAKIL 554 (750)
Q Consensus 531 ~iKLLLLGaGESGKSTILKQMKIL 554 (750)
--.+.|+|..||||||++|-+-=+
T Consensus 37 Ge~~~l~G~nGsGKSTLl~~l~Gl 60 (289)
T PRK13645 37 NKVTCVIGTTGSGKSTMIQLTNGL 60 (289)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 345899999999999999976433
No 357
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=81.14 E-value=1.4 Score=50.76 Aligned_cols=31 Identities=29% Similarity=0.273 Sum_probs=25.4
Q ss_pred HhcceeeEEEeecCCCCchhHHhHhhhhhcC
Q 004481 527 ERRTLQKLLLVGCSGSGTSTIFKQAKILYKA 557 (750)
Q Consensus 527 ~~kr~iKLLLLGaGESGKSTILKQMKILh~~ 557 (750)
+-+.--|++++|..||||||++|-+-=+|.|
T Consensus 363 ~i~~Ge~iaIvG~SGsGKSTLl~lL~gl~~p 393 (592)
T PRK10790 363 SVPSRGFVALVGHTGSGKSTLASLLMGYYPL 393 (592)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhcccCC
Confidence 3446678999999999999999988666654
No 358
>TIGR00101 ureG urease accessory protein UreG. This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.
Probab=81.14 E-value=0.99 Score=45.69 Aligned_cols=21 Identities=24% Similarity=0.409 Sum_probs=18.3
Q ss_pred eeEEEeecCCCCchhHHhHhh
Q 004481 532 QKLLLVGCSGSGTSTIFKQAK 552 (750)
Q Consensus 532 iKLLLLGaGESGKSTILKQMK 552 (750)
.|+.|+|..+|||||+++.+-
T Consensus 2 ~~i~i~G~~GsGKTTll~~l~ 22 (199)
T TIGR00101 2 LKIGVAGPVGSGKTALIEALT 22 (199)
T ss_pred eEEEEECCCCCCHHHHHHHHH
Confidence 589999999999999998643
No 359
>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional
Probab=81.11 E-value=0.95 Score=46.72 Aligned_cols=23 Identities=30% Similarity=0.462 Sum_probs=19.2
Q ss_pred eeeEEEeecCCCCchhHHhHhhh
Q 004481 531 LQKLLLVGCSGSGTSTIFKQAKI 553 (750)
Q Consensus 531 ~iKLLLLGaGESGKSTILKQMKI 553 (750)
--.+.|+|..||||||++|-+-=
T Consensus 38 Ge~~~l~G~nGsGKSTLl~~l~G 60 (259)
T PRK14274 38 NEVTAIIGPSGCGKSTFIKTLNL 60 (259)
T ss_pred CCEEEEECCCCCCHHHHHHHHHh
Confidence 34589999999999999997643
No 360
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=81.09 E-value=1.2 Score=48.48 Aligned_cols=23 Identities=43% Similarity=0.635 Sum_probs=19.3
Q ss_pred EEEeecCCCCchhHHhHhhhhhc
Q 004481 534 LLLVGCSGSGTSTIFKQAKILYK 556 (750)
Q Consensus 534 LLLLGaGESGKSTILKQMKILh~ 556 (750)
+.|+|++||||||++|-+.-|..
T Consensus 30 ~vliGpSGsGKTTtLkMINrLie 52 (309)
T COG1125 30 LVLIGPSGSGKTTTLKMINRLIE 52 (309)
T ss_pred EEEECCCCCcHHHHHHHHhcccC
Confidence 57899999999999998765544
No 361
>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional
Probab=81.08 E-value=0.94 Score=47.52 Aligned_cols=25 Identities=24% Similarity=0.433 Sum_probs=20.3
Q ss_pred ceeeEEEeecCCCCchhHHhHhhhh
Q 004481 530 TLQKLLLVGCSGSGTSTIFKQAKIL 554 (750)
Q Consensus 530 r~iKLLLLGaGESGKSTILKQMKIL 554 (750)
.--.+.|+|..||||||++|-+-=+
T Consensus 45 ~Ge~~~IiG~nGsGKSTLl~~l~Gl 69 (274)
T PRK14265 45 AKKIIAFIGPSGCGKSTLLRCFNRM 69 (274)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcc
Confidence 3446899999999999999987533
No 362
>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=81.01 E-value=0.89 Score=48.18 Aligned_cols=26 Identities=27% Similarity=0.453 Sum_probs=21.3
Q ss_pred ceeeEEEeecCCCCchhHHhHhhhhh
Q 004481 530 TLQKLLLVGCSGSGTSTIFKQAKILY 555 (750)
Q Consensus 530 r~iKLLLLGaGESGKSTILKQMKILh 555 (750)
.--.+.|+|+.||||||++|-+-=++
T Consensus 32 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 57 (290)
T PRK13634 32 SGSYVAIIGHTGSGKSTLLQHLNGLL 57 (290)
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 34568999999999999999876544
No 363
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=80.99 E-value=0.95 Score=47.79 Aligned_cols=27 Identities=33% Similarity=0.474 Sum_probs=21.7
Q ss_pred ceeeEEEeecCCCCchhHHhHhhhhhc
Q 004481 530 TLQKLLLVGCSGSGTSTIFKQAKILYK 556 (750)
Q Consensus 530 r~iKLLLLGaGESGKSTILKQMKILh~ 556 (750)
.--.+.|+|..||||||++|-|-=++.
T Consensus 32 ~Ge~~~i~G~nGsGKSTLl~~L~Gl~~ 58 (286)
T PRK13646 32 QGKYYAIVGQTGSGKSTLIQNINALLK 58 (286)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 345689999999999999998765543
No 364
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=80.94 E-value=0.98 Score=45.16 Aligned_cols=26 Identities=31% Similarity=0.388 Sum_probs=21.2
Q ss_pred eeeEEEeecCCCCchhHHhHhhhhhc
Q 004481 531 LQKLLLVGCSGSGTSTIFKQAKILYK 556 (750)
Q Consensus 531 ~iKLLLLGaGESGKSTILKQMKILh~ 556 (750)
--.+.|+|..||||||++|-+-=++.
T Consensus 33 Ge~~~i~G~nGsGKSTLl~~l~G~~~ 58 (202)
T cd03233 33 GEMVLVLGRPGSGCSTLLKALANRTE 58 (202)
T ss_pred CcEEEEECCCCCCHHHHHHHhcccCC
Confidence 34789999999999999998665543
No 365
>PRK14238 phosphate transporter ATP-binding protein; Provisional
Probab=80.94 E-value=0.97 Score=47.30 Aligned_cols=25 Identities=28% Similarity=0.369 Sum_probs=20.3
Q ss_pred ceeeEEEeecCCCCchhHHhHhhhh
Q 004481 530 TLQKLLLVGCSGSGTSTIFKQAKIL 554 (750)
Q Consensus 530 r~iKLLLLGaGESGKSTILKQMKIL 554 (750)
.--.+.|+|..||||||++|-+-=+
T Consensus 49 ~Ge~~~I~G~nGsGKSTLl~~i~Gl 73 (271)
T PRK14238 49 ENEVTAIIGPSGCGKSTYIKTLNRM 73 (271)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhh
Confidence 3456899999999999999987533
No 366
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=80.94 E-value=1 Score=40.63 Aligned_cols=22 Identities=32% Similarity=0.514 Sum_probs=17.5
Q ss_pred EEEeecCCCCchhHHhHhhhhh
Q 004481 534 LLLVGCSGSGTSTIFKQAKILY 555 (750)
Q Consensus 534 LLLLGaGESGKSTILKQMKILh 555 (750)
+++.|..|+||||+++++.--+
T Consensus 7 ~~i~G~~G~GKT~~~~~~~~~~ 28 (131)
T PF13401_consen 7 LVISGPPGSGKTTLIKRLARQL 28 (131)
T ss_dssp EEEEE-TTSSHHHHHHHHHHHH
T ss_pred cEEEcCCCCCHHHHHHHHHHHh
Confidence 6889999999999999865443
No 367
>PRK14529 adenylate kinase; Provisional
Probab=80.94 E-value=1.1 Score=46.67 Aligned_cols=24 Identities=33% Similarity=0.440 Sum_probs=19.8
Q ss_pred eEEEeecCCCCchhHHhHhhhhhc
Q 004481 533 KLLLVGCSGSGTSTIFKQAKILYK 556 (750)
Q Consensus 533 KLLLLGaGESGKSTILKQMKILh~ 556 (750)
+|+|+|+.||||||+.+++.-.|+
T Consensus 2 ~I~l~G~PGsGK~T~a~~La~~~~ 25 (223)
T PRK14529 2 NILIFGPNGSGKGTQGALVKKKYD 25 (223)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHC
Confidence 799999999999999887654443
No 368
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter. This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.
Probab=80.93 E-value=1.5 Score=51.96 Aligned_cols=29 Identities=38% Similarity=0.459 Sum_probs=24.1
Q ss_pred cceeeEEEeecCCCCchhHHhHhhhhhcC
Q 004481 529 RTLQKLLLVGCSGSGTSTIFKQAKILYKA 557 (750)
Q Consensus 529 kr~iKLLLLGaGESGKSTILKQMKILh~~ 557 (750)
+.--++.++|.+||||||++|-+-=+|.|
T Consensus 498 ~~G~~vaIvG~SGsGKSTLlklL~gl~~p 526 (708)
T TIGR01193 498 KMNSKTTIVGMSGSGKSTLAKLLVGFFQA 526 (708)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhccCCC
Confidence 45668999999999999999988666654
No 369
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=80.91 E-value=0.97 Score=47.27 Aligned_cols=24 Identities=33% Similarity=0.389 Sum_probs=19.6
Q ss_pred eeeEEEeecCCCCchhHHhHhhhh
Q 004481 531 LQKLLLVGCSGSGTSTIFKQAKIL 554 (750)
Q Consensus 531 ~iKLLLLGaGESGKSTILKQMKIL 554 (750)
--.+.|+|..||||||++|-+-=+
T Consensus 33 Ge~~~l~G~nGsGKSTLl~~i~Gl 56 (280)
T PRK13649 33 GSYTAFIGHTGSGKSTIMQLLNGL 56 (280)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCC
Confidence 345899999999999999976443
No 370
>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional
Probab=80.91 E-value=0.98 Score=46.51 Aligned_cols=26 Identities=35% Similarity=0.374 Sum_probs=20.8
Q ss_pred ceeeEEEeecCCCCchhHHhHhhhhh
Q 004481 530 TLQKLLLVGCSGSGTSTIFKQAKILY 555 (750)
Q Consensus 530 r~iKLLLLGaGESGKSTILKQMKILh 555 (750)
.--.+.|+|..||||||++|-|-=++
T Consensus 27 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 52 (255)
T PRK11231 27 TGKITALIGPNGCGKSTLLKCFARLL 52 (255)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCc
Confidence 34468999999999999999765443
No 371
>smart00072 GuKc Guanylate kinase homologues. Active enzymes catalyze ATP-dependent phosphorylation of GMP to GDP. Structure resembles that of adenylate kinase. So-called membrane-associated guanylate kinase homologues (MAGUKs) do not possess guanylate kinase activities; instead at least some possess protein-binding functions.
Probab=80.84 E-value=0.98 Score=44.49 Aligned_cols=21 Identities=29% Similarity=0.423 Sum_probs=18.3
Q ss_pred EEEeecCCCCchhHHhHhhhh
Q 004481 534 LLLVGCSGSGTSTIFKQAKIL 554 (750)
Q Consensus 534 LLLLGaGESGKSTILKQMKIL 554 (750)
++|+|+.+|||+|+.++|.--
T Consensus 5 ivl~Gpsg~GK~tl~~~L~~~ 25 (184)
T smart00072 5 IVLSGPSGVGKGTLLAELIQE 25 (184)
T ss_pred EEEECCCCCCHHHHHHHHHhc
Confidence 688999999999999998543
No 372
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=80.82 E-value=0.99 Score=43.02 Aligned_cols=26 Identities=31% Similarity=0.353 Sum_probs=20.3
Q ss_pred ceeeEEEeecCCCCchhHHhHhhhhh
Q 004481 530 TLQKLLLVGCSGSGTSTIFKQAKILY 555 (750)
Q Consensus 530 r~iKLLLLGaGESGKSTILKQMKILh 555 (750)
.--.+.|+|..||||||+++-+-=++
T Consensus 25 ~Ge~~~i~G~nGsGKStLl~~l~G~~ 50 (144)
T cd03221 25 PGDRIGLVGRNGAGKSTLLKLIAGEL 50 (144)
T ss_pred CCCEEEEECCCCCCHHHHHHHHcCCC
Confidence 33457899999999999999764443
No 373
>cd03290 ABCC_SUR1_N The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=80.82 E-value=0.96 Score=45.32 Aligned_cols=25 Identities=28% Similarity=0.255 Sum_probs=20.4
Q ss_pred ceeeEEEeecCCCCchhHHhHhhhh
Q 004481 530 TLQKLLLVGCSGSGTSTIFKQAKIL 554 (750)
Q Consensus 530 r~iKLLLLGaGESGKSTILKQMKIL 554 (750)
.--.+.|+|..||||||++|-+-=+
T Consensus 26 ~Ge~~~i~G~nGsGKSTLl~~i~G~ 50 (218)
T cd03290 26 TGQLTMIVGQVGCGKSSLLLAILGE 50 (218)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcc
Confidence 3456899999999999999976533
No 374
>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional
Probab=80.82 E-value=0.99 Score=46.15 Aligned_cols=25 Identities=24% Similarity=0.432 Sum_probs=20.1
Q ss_pred ceeeEEEeecCCCCchhHHhHhhhh
Q 004481 530 TLQKLLLVGCSGSGTSTIFKQAKIL 554 (750)
Q Consensus 530 r~iKLLLLGaGESGKSTILKQMKIL 554 (750)
.--.+.|+|..||||||++|-+-=+
T Consensus 28 ~Ge~~~i~G~nGsGKSTLl~~i~Gl 52 (250)
T PRK14262 28 KNQITAIIGPSGCGKTTLLRSINRM 52 (250)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcc
Confidence 3446899999999999999976533
No 375
>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=80.80 E-value=1.1 Score=46.79 Aligned_cols=23 Identities=26% Similarity=0.332 Sum_probs=20.5
Q ss_pred cceeeEEEeecCCCCchhHHhHh
Q 004481 529 RTLQKLLLVGCSGSGTSTIFKQA 551 (750)
Q Consensus 529 kr~iKLLLLGaGESGKSTILKQM 551 (750)
-..+||+|||.+++|||+|++++
T Consensus 11 ~~~~KIvvvGd~~VGKTsLi~r~ 33 (232)
T cd04174 11 VMRCKLVLVGDVQCGKTAMLQVL 33 (232)
T ss_pred eeeEEEEEECCCCCcHHHHHHHH
Confidence 34689999999999999999875
No 376
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=80.79 E-value=1.5 Score=50.59 Aligned_cols=29 Identities=24% Similarity=0.469 Sum_probs=24.4
Q ss_pred cceeeEEEeecCCCCchhHHhHhhhhhcC
Q 004481 529 RTLQKLLLVGCSGSGTSTIFKQAKILYKA 557 (750)
Q Consensus 529 kr~iKLLLLGaGESGKSTILKQMKILh~~ 557 (750)
+.--++.++|.+||||||++|-+-=+|.|
T Consensus 359 ~~G~~v~IvG~sGsGKSTLl~lL~gl~~p 387 (588)
T PRK13657 359 KPGQTVAIVGPTGAGKSTLINLLQRVFDP 387 (588)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCcCC
Confidence 45567999999999999999988767664
No 377
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=80.77 E-value=1 Score=44.78 Aligned_cols=26 Identities=27% Similarity=0.351 Sum_probs=21.0
Q ss_pred ceeeEEEeecCCCCchhHHhHhhhhh
Q 004481 530 TLQKLLLVGCSGSGTSTIFKQAKILY 555 (750)
Q Consensus 530 r~iKLLLLGaGESGKSTILKQMKILh 555 (750)
.--.+.|+|..||||||++|-|-=++
T Consensus 33 ~G~~~~i~G~nGsGKSTLl~~l~Gl~ 58 (207)
T cd03369 33 AGEKIGIVGRTGAGKSTLILALFRFL 58 (207)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccc
Confidence 34568999999999999999875443
No 378
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=80.74 E-value=0.97 Score=45.18 Aligned_cols=24 Identities=33% Similarity=0.447 Sum_probs=19.7
Q ss_pred eeEEEeecCCCCchhHHhHhhhhh
Q 004481 532 QKLLLVGCSGSGTSTIFKQAKILY 555 (750)
Q Consensus 532 iKLLLLGaGESGKSTILKQMKILh 555 (750)
-.+.|+|..||||||++|-+-=++
T Consensus 31 e~~~i~G~nGsGKSTLl~~l~G~~ 54 (221)
T cd03244 31 EKVGIVGRTGSGKSSLLLALFRLV 54 (221)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCC
Confidence 458899999999999999765443
No 379
>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts). This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.
Probab=80.66 E-value=1.1 Score=47.11 Aligned_cols=27 Identities=22% Similarity=0.283 Sum_probs=22.7
Q ss_pred HHHhcceeeEEEeecCCCCchhHHhHh
Q 004481 525 YIERRTLQKLLLVGCSGSGTSTIFKQA 551 (750)
Q Consensus 525 k~~~kr~iKLLLLGaGESGKSTILKQM 551 (750)
+......++|+|+|..++||||++..+
T Consensus 25 ~~~~~~~~~IllvG~tGvGKSSliNaL 51 (249)
T cd01853 25 KEELDFSLTILVLGKTGVGKSSTINSI 51 (249)
T ss_pred hhhccCCeEEEEECCCCCcHHHHHHHH
Confidence 345567899999999999999998764
No 380
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=80.63 E-value=1 Score=46.87 Aligned_cols=25 Identities=32% Similarity=0.384 Sum_probs=20.2
Q ss_pred ceeeEEEeecCCCCchhHHhHhhhh
Q 004481 530 TLQKLLLVGCSGSGTSTIFKQAKIL 554 (750)
Q Consensus 530 r~iKLLLLGaGESGKSTILKQMKIL 554 (750)
.--.+.|+|..||||||++|-|-=+
T Consensus 29 ~Ge~~~I~G~NGsGKSTLl~~i~Gl 53 (251)
T PRK09544 29 PGKILTLLGPNGAGKSTLVRVVLGL 53 (251)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCC
Confidence 4456899999999999999975533
No 381
>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site. The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....
Probab=80.57 E-value=1.2 Score=43.51 Aligned_cols=25 Identities=16% Similarity=0.385 Sum_probs=21.5
Q ss_pred cceeeEEEeecCCCCchhHHhHhhh
Q 004481 529 RTLQKLLLVGCSGSGTSTIFKQAKI 553 (750)
Q Consensus 529 kr~iKLLLLGaGESGKSTILKQMKI 553 (750)
|+...|.++|..+|||||++..|--
T Consensus 1 k~~~~I~i~G~~~sGKTTL~~~L~~ 25 (188)
T PF00009_consen 1 KNIRNIAIIGHVDSGKTTLLGALLG 25 (188)
T ss_dssp STEEEEEEEESTTSSHHHHHHHHHH
T ss_pred CCEEEEEEECCCCCCcEeechhhhh
Confidence 4577899999999999999998643
No 382
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=80.55 E-value=1.6 Score=51.45 Aligned_cols=29 Identities=38% Similarity=0.539 Sum_probs=24.0
Q ss_pred cceeeEEEeecCCCCchhHHhHhhhhhcC
Q 004481 529 RTLQKLLLVGCSGSGTSTIFKQAKILYKA 557 (750)
Q Consensus 529 kr~iKLLLLGaGESGKSTILKQMKILh~~ 557 (750)
+.--|+.++|..||||||++|-+-=+|.|
T Consensus 489 ~~G~~iaIvG~sGsGKSTLlklL~gl~~p 517 (694)
T TIGR03375 489 RPGEKVAIIGRIGSGKSTLLKLLLGLYQP 517 (694)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCCC
Confidence 34568999999999999999988766654
No 383
>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional
Probab=80.54 E-value=0.97 Score=46.69 Aligned_cols=24 Identities=29% Similarity=0.365 Sum_probs=19.9
Q ss_pred eeeEEEeecCCCCchhHHhHhhhh
Q 004481 531 LQKLLLVGCSGSGTSTIFKQAKIL 554 (750)
Q Consensus 531 ~iKLLLLGaGESGKSTILKQMKIL 554 (750)
--.+.|+|..||||||++|-|-=+
T Consensus 38 Ge~~~i~G~nGsGKSTLl~~i~Gl 61 (258)
T PRK14268 38 NSVTALIGPSGCGKSTFIRCLNRM 61 (258)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 345899999999999999987544
No 384
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=80.52 E-value=1.2 Score=44.23 Aligned_cols=25 Identities=36% Similarity=0.426 Sum_probs=20.3
Q ss_pred HhcceeeEEEeecCCCCchhHHhHh
Q 004481 527 ERRTLQKLLLVGCSGSGTSTIFKQA 551 (750)
Q Consensus 527 ~~kr~iKLLLLGaGESGKSTILKQM 551 (750)
.....--|||.|..|+||||+++++
T Consensus 34 ~~~~~~~lll~G~~G~GKT~la~~~ 58 (226)
T TIGR03420 34 AGKGDRFLYLWGESGSGKSHLLQAA 58 (226)
T ss_pred hcCCCCeEEEECCCCCCHHHHHHHH
Confidence 3445557899999999999999875
No 385
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=80.52 E-value=0.99 Score=47.75 Aligned_cols=26 Identities=31% Similarity=0.400 Sum_probs=21.0
Q ss_pred ceeeEEEeecCCCCchhHHhHhhhhh
Q 004481 530 TLQKLLLVGCSGSGTSTIFKQAKILY 555 (750)
Q Consensus 530 r~iKLLLLGaGESGKSTILKQMKILh 555 (750)
.--.+.|+|+.||||||++|-|-=+.
T Consensus 32 ~Ge~~~i~G~nGaGKSTLl~~l~Gl~ 57 (287)
T PRK13637 32 DGEFVGLIGHTGSGKSTLIQHLNGLL 57 (287)
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 34468999999999999999876443
No 386
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=80.51 E-value=1.1 Score=44.74 Aligned_cols=26 Identities=27% Similarity=0.350 Sum_probs=21.0
Q ss_pred ceeeEEEeecCCCCchhHHhHhhhhh
Q 004481 530 TLQKLLLVGCSGSGTSTIFKQAKILY 555 (750)
Q Consensus 530 r~iKLLLLGaGESGKSTILKQMKILh 555 (750)
.--.+.|+|..||||||++|-+-=++
T Consensus 25 ~Ge~~~i~G~nGsGKSTLl~~l~G~~ 50 (201)
T cd03231 25 AGEALQVTGPNGSGKTTLLRILAGLS 50 (201)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 45578999999999999999765443
No 387
>CHL00131 ycf16 sulfate ABC transporter protein; Validated
Probab=80.49 E-value=1 Score=46.01 Aligned_cols=23 Identities=30% Similarity=0.316 Sum_probs=19.4
Q ss_pred ceeeEEEeecCCCCchhHHhHhh
Q 004481 530 TLQKLLLVGCSGSGTSTIFKQAK 552 (750)
Q Consensus 530 r~iKLLLLGaGESGKSTILKQMK 552 (750)
.--.+.|+|..||||||++|-+-
T Consensus 32 ~Ge~~~i~G~nGsGKSTLl~~i~ 54 (252)
T CHL00131 32 KGEIHAIMGPNGSGKSTLSKVIA 54 (252)
T ss_pred CCcEEEEECCCCCCHHHHHHHHc
Confidence 45578999999999999998654
No 388
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=80.39 E-value=0.66 Score=53.91 Aligned_cols=36 Identities=22% Similarity=0.333 Sum_probs=22.7
Q ss_pred cccccchhHHHhcceeeEEE-eecCCCCchhHHhHhh
Q 004481 517 LMSRSVPDYIERRTLQKLLL-VGCSGSGTSTIFKQAK 552 (750)
Q Consensus 517 ~IDrsLqdk~~~kr~iKLLL-LGaGESGKSTILKQMK 552 (750)
.+...|++........+||| -|+.||||||.+|.+-
T Consensus 30 eV~~wl~~~~~~~~~~~iLlLtGP~G~GKtttv~~La 66 (519)
T PF03215_consen 30 EVRSWLEEMFSGSSPKRILLLTGPSGCGKTTTVKVLA 66 (519)
T ss_pred HHHHHHHHHhccCCCcceEEEECCCCCCHHHHHHHHH
Confidence 44455554333333344555 5999999999998643
No 389
>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]
Probab=80.39 E-value=0.54 Score=52.56 Aligned_cols=37 Identities=32% Similarity=0.660 Sum_probs=27.1
Q ss_pred cCceecccCCceeeeeeeeeecCCccccccchhccCCCcCC
Q 004481 271 KGSCYRCFKGNRFTEKEVCIVCDAKYCCNCVLRAMGSMPEG 311 (750)
Q Consensus 271 ~~~c~~c~~~~~~~~~e~c~vc~~~yc~~cv~~~mg~m~eg 311 (750)
|-.|.||+..++ +-+.=+-||+-||++|+. ||-..+-
T Consensus 39 k~~C~RC~~~~~--~~~~~lp~~~~YCr~Cl~--mgRv~sd 75 (441)
T COG4098 39 KYRCNRCGNTHI--ELFAKLPCGCLYCRNCLM--MGRVRSD 75 (441)
T ss_pred cEEehhcCCcch--hhhcccccceEeehhhhh--ccccccc
Confidence 358999998854 345567899999999986 5554443
No 390
>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional
Probab=80.38 E-value=1 Score=46.19 Aligned_cols=22 Identities=32% Similarity=0.437 Sum_probs=19.0
Q ss_pred eeeEEEeecCCCCchhHHhHhh
Q 004481 531 LQKLLLVGCSGSGTSTIFKQAK 552 (750)
Q Consensus 531 ~iKLLLLGaGESGKSTILKQMK 552 (750)
--.+.|+|..||||||++|-+-
T Consensus 32 Ge~~~i~G~nGsGKSTLl~~l~ 53 (253)
T PRK14261 32 NRVTALIGPSGCGKSTLLRCFN 53 (253)
T ss_pred CcEEEEECCCCCCHHHHHHHHh
Confidence 3458999999999999999874
No 391
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=80.33 E-value=1 Score=43.17 Aligned_cols=21 Identities=43% Similarity=0.525 Sum_probs=17.9
Q ss_pred EEEeecCCCCchhHHhHhhhh
Q 004481 534 LLLVGCSGSGTSTIFKQAKIL 554 (750)
Q Consensus 534 LLLLGaGESGKSTILKQMKIL 554 (750)
+++.|..+|||||+.+++.-.
T Consensus 2 i~i~G~~GsGKSTla~~L~~~ 22 (149)
T cd02027 2 IWLTGLSGSGKSTIARALEEK 22 (149)
T ss_pred EEEEcCCCCCHHHHHHHHHHH
Confidence 678999999999999986544
No 392
>PRK13947 shikimate kinase; Provisional
Probab=80.32 E-value=1.1 Score=42.82 Aligned_cols=20 Identities=30% Similarity=0.634 Sum_probs=17.7
Q ss_pred eEEEeecCCCCchhHHhHhh
Q 004481 533 KLLLVGCSGSGTSTIFKQAK 552 (750)
Q Consensus 533 KLLLLGaGESGKSTILKQMK 552 (750)
+|+|+|..+|||||+-|.+-
T Consensus 3 ~I~l~G~~GsGKst~a~~La 22 (171)
T PRK13947 3 NIVLIGFMGTGKTTVGKRVA 22 (171)
T ss_pred eEEEEcCCCCCHHHHHHHHH
Confidence 58999999999999988753
No 393
>PRK14235 phosphate transporter ATP-binding protein; Provisional
Probab=80.30 E-value=1 Score=46.86 Aligned_cols=25 Identities=24% Similarity=0.328 Sum_probs=20.4
Q ss_pred eeeEEEeecCCCCchhHHhHhhhhh
Q 004481 531 LQKLLLVGCSGSGTSTIFKQAKILY 555 (750)
Q Consensus 531 ~iKLLLLGaGESGKSTILKQMKILh 555 (750)
--.+.|+|..||||||++|-+-=++
T Consensus 45 Ge~~~i~G~nGsGKSTLl~~l~Gl~ 69 (267)
T PRK14235 45 KTVTAFIGPSGCGKSTFLRCLNRMN 69 (267)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhc
Confidence 3457999999999999999875443
No 394
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=80.28 E-value=1.1 Score=46.01 Aligned_cols=24 Identities=29% Similarity=0.426 Sum_probs=19.9
Q ss_pred eeeEEEeecCCCCchhHHhHhhhh
Q 004481 531 LQKLLLVGCSGSGTSTIFKQAKIL 554 (750)
Q Consensus 531 ~iKLLLLGaGESGKSTILKQMKIL 554 (750)
--.+.|+|..||||||++|-+-=+
T Consensus 28 Ge~~~i~G~nGsGKSTLl~~l~Gl 51 (246)
T PRK14269 28 NKITALIGASGCGKSTFLRCFNRM 51 (246)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcc
Confidence 346899999999999999977544
No 395
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=80.28 E-value=1 Score=43.59 Aligned_cols=22 Identities=23% Similarity=0.400 Sum_probs=18.7
Q ss_pred EEEeecCCCCchhHHhHhhhhh
Q 004481 534 LLLVGCSGSGTSTIFKQAKILY 555 (750)
Q Consensus 534 LLLLGaGESGKSTILKQMKILh 555 (750)
++++|.++|||||+++++--..
T Consensus 2 i~~~G~~GsGKTt~~~~l~~~~ 23 (148)
T cd03114 2 IGITGVPGAGKSTLIDALITAL 23 (148)
T ss_pred EEEECCCCCcHHHHHHHHHHHH
Confidence 7899999999999999875443
No 396
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=80.25 E-value=1.3 Score=42.21 Aligned_cols=24 Identities=17% Similarity=0.356 Sum_probs=21.0
Q ss_pred cceeeEEEeecCCCCchhHHhHhh
Q 004481 529 RTLQKLLLVGCSGSGTSTIFKQAK 552 (750)
Q Consensus 529 kr~iKLLLLGaGESGKSTILKQMK 552 (750)
...+++.++|..+.||||+++.|.
T Consensus 100 ~~~~~v~~~G~~nvGKStliN~l~ 123 (157)
T cd01858 100 KKQISVGFIGYPNVGKSSIINTLR 123 (157)
T ss_pred ccceEEEEEeCCCCChHHHHHHHh
Confidence 346789999999999999999984
No 397
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=80.21 E-value=1.5 Score=47.00 Aligned_cols=36 Identities=33% Similarity=0.502 Sum_probs=26.7
Q ss_pred EEEeecCCCCchhHHhHhhhhhcC------------CCCCHHHHhhhh
Q 004481 534 LLLVGCSGSGTSTIFKQAKILYKA------------VPFSDDEHENIK 569 (750)
Q Consensus 534 LLLLGaGESGKSTILKQMKILh~~------------~GFSeeER~~~K 569 (750)
+-++|.+||||||++|++--+-.| .+.+++|+..++
T Consensus 37 ~~iiGgSGsGKStlLr~I~Gll~P~~GeI~i~G~~i~~ls~~~~~~ir 84 (263)
T COG1127 37 LAILGGSGSGKSTLLRLILGLLRPDKGEILIDGEDIPQLSEEELYEIR 84 (263)
T ss_pred EEEECCCCcCHHHHHHHHhccCCCCCCeEEEcCcchhccCHHHHHHHH
Confidence 567899999999999987655443 346777776544
No 398
>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional
Probab=80.21 E-value=1.1 Score=46.98 Aligned_cols=23 Identities=30% Similarity=0.453 Sum_probs=19.3
Q ss_pred ceeeEEEeecCCCCchhHHhHhh
Q 004481 530 TLQKLLLVGCSGSGTSTIFKQAK 552 (750)
Q Consensus 530 r~iKLLLLGaGESGKSTILKQMK 552 (750)
.--.+.|+|..||||||++|-+-
T Consensus 38 ~Ge~~~l~G~nGsGKSTLl~~l~ 60 (269)
T PRK14259 38 RGKVTALIGPSGCGKSTVLRSLN 60 (269)
T ss_pred CCCEEEEECCCCCCHHHHHHHHh
Confidence 34468899999999999999864
No 399
>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []. Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.
Probab=80.19 E-value=1.2 Score=47.76 Aligned_cols=21 Identities=29% Similarity=0.455 Sum_probs=19.1
Q ss_pred eeeEEEeecCCCCchhHHhHh
Q 004481 531 LQKLLLVGCSGSGTSTIFKQA 551 (750)
Q Consensus 531 ~iKLLLLGaGESGKSTILKQM 551 (750)
..+||++|..|+||||+++-|
T Consensus 4 ~fnImVvG~sG~GKTTFIntL 24 (281)
T PF00735_consen 4 NFNIMVVGESGLGKTTFINTL 24 (281)
T ss_dssp EEEEEEEECTTSSHHHHHHHH
T ss_pred eEEEEEECCCCCCHHHHHHHH
Confidence 578999999999999999875
No 400
>cd04120 Rab12 Rab12 subfamily. Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic
Probab=80.13 E-value=1.1 Score=45.30 Aligned_cols=21 Identities=14% Similarity=0.613 Sum_probs=18.8
Q ss_pred eeEEEeecCCCCchhHHhHhh
Q 004481 532 QKLLLVGCSGSGTSTIFKQAK 552 (750)
Q Consensus 532 iKLLLLGaGESGKSTILKQMK 552 (750)
+.|++||.+++|||||++++.
T Consensus 1 ~~vvvlG~~gVGKTSli~r~~ 21 (202)
T cd04120 1 LQVIIIGSRGVGKTSLMRRFT 21 (202)
T ss_pred CEEEEECcCCCCHHHHHHHHH
Confidence 358999999999999999974
No 401
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=80.13 E-value=1 Score=47.07 Aligned_cols=26 Identities=31% Similarity=0.473 Sum_probs=20.7
Q ss_pred ceeeEEEeecCCCCchhHHhHhhhhh
Q 004481 530 TLQKLLLVGCSGSGTSTIFKQAKILY 555 (750)
Q Consensus 530 r~iKLLLLGaGESGKSTILKQMKILh 555 (750)
.--.+.|+|..||||||++|-+-=++
T Consensus 49 ~Ge~~~l~G~nGsGKSTLl~~L~Gl~ 74 (269)
T cd03294 49 EGEIFVIMGLSGSGKSTLLRCINRLI 74 (269)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 34467899999999999999765444
No 402
>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional
Probab=80.09 E-value=1 Score=46.08 Aligned_cols=23 Identities=30% Similarity=0.381 Sum_probs=19.5
Q ss_pred eeeEEEeecCCCCchhHHhHhhh
Q 004481 531 LQKLLLVGCSGSGTSTIFKQAKI 553 (750)
Q Consensus 531 ~iKLLLLGaGESGKSTILKQMKI 553 (750)
--.+.|+|..||||||++|-+-=
T Consensus 31 Ge~~~l~G~nGsGKSTLl~~l~G 53 (252)
T PRK14255 31 NEITALIGPSGCGKSTYLRTLNR 53 (252)
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 34589999999999999998753
No 403
>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma
Probab=80.05 E-value=1.1 Score=46.14 Aligned_cols=21 Identities=19% Similarity=0.403 Sum_probs=19.5
Q ss_pred eeEEEeecCCCCchhHHhHhh
Q 004481 532 QKLLLVGCSGSGTSTIFKQAK 552 (750)
Q Consensus 532 iKLLLLGaGESGKSTILKQMK 552 (750)
+||++||.+++|||+|+.++.
T Consensus 2 ~KIvvvGd~~vGKTsLi~~~~ 22 (222)
T cd04173 2 CKIVVVGDAECGKTALLQVFA 22 (222)
T ss_pred eEEEEECCCCCCHHHHHHHHH
Confidence 799999999999999999964
No 404
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=80.00 E-value=0.95 Score=48.28 Aligned_cols=20 Identities=30% Similarity=0.507 Sum_probs=17.1
Q ss_pred eEEEeecCCCCchhHHhHhh
Q 004481 533 KLLLVGCSGSGTSTIFKQAK 552 (750)
Q Consensus 533 KLLLLGaGESGKSTILKQMK 552 (750)
=+-|||++|+||||+|+-+=
T Consensus 31 fvsilGpSGcGKSTLLriiA 50 (248)
T COG1116 31 FVAILGPSGCGKSTLLRLIA 50 (248)
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 36789999999999998654
No 405
>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional
Probab=79.92 E-value=1.1 Score=45.93 Aligned_cols=22 Identities=27% Similarity=0.395 Sum_probs=18.9
Q ss_pred eeeEEEeecCCCCchhHHhHhh
Q 004481 531 LQKLLLVGCSGSGTSTIFKQAK 552 (750)
Q Consensus 531 ~iKLLLLGaGESGKSTILKQMK 552 (750)
--.+.|+|..||||||++|-+-
T Consensus 31 Ge~~~I~G~nGsGKSTLl~~i~ 52 (251)
T PRK14244 31 REVTAFIGPSGCGKSTFLRCFN 52 (251)
T ss_pred CCEEEEECCCCCCHHHHHHHHH
Confidence 4458899999999999999764
No 406
>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional
Probab=79.92 E-value=1.1 Score=46.36 Aligned_cols=27 Identities=33% Similarity=0.426 Sum_probs=21.6
Q ss_pred ceeeEEEeecCCCCchhHHhHhhhhhc
Q 004481 530 TLQKLLLVGCSGSGTSTIFKQAKILYK 556 (750)
Q Consensus 530 r~iKLLLLGaGESGKSTILKQMKILh~ 556 (750)
.--.+.|+|..||||||++|-+-=++.
T Consensus 29 ~Ge~~~i~G~nGsGKSTLl~~i~G~~~ 55 (262)
T PRK09984 29 HGEMVALLGPSGSGKSTLLRHLSGLIT 55 (262)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhccCC
Confidence 344689999999999999997665544
No 407
>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional
Probab=79.92 E-value=1.1 Score=45.76 Aligned_cols=25 Identities=24% Similarity=0.316 Sum_probs=20.6
Q ss_pred eeeEEEeecCCCCchhHHhHhhhhh
Q 004481 531 LQKLLLVGCSGSGTSTIFKQAKILY 555 (750)
Q Consensus 531 ~iKLLLLGaGESGKSTILKQMKILh 555 (750)
--.+.|+|+.||||||++|-+-=++
T Consensus 30 Ge~~~i~G~nGsGKSTLl~~i~G~~ 54 (252)
T PRK14272 30 GTVNALIGPSGCGKTTFLRAINRMH 54 (252)
T ss_pred CCEEEEECCCCCCHHHHHHHHhccC
Confidence 4458999999999999999866554
No 408
>PRK06547 hypothetical protein; Provisional
Probab=79.87 E-value=1.4 Score=43.91 Aligned_cols=26 Identities=27% Similarity=0.354 Sum_probs=21.1
Q ss_pred HHhcceeeEEEeecCCCCchhHHhHh
Q 004481 526 IERRTLQKLLLVGCSGSGTSTIFKQA 551 (750)
Q Consensus 526 ~~~kr~iKLLLLGaGESGKSTILKQM 551 (750)
....+...|++-|..+|||||+.+.+
T Consensus 10 ~~~~~~~~i~i~G~~GsGKTt~a~~l 35 (172)
T PRK06547 10 LCGGGMITVLIDGRSGSGKTTLAGAL 35 (172)
T ss_pred hhcCCCEEEEEECCCCCCHHHHHHHH
Confidence 44456777888899999999998876
No 409
>PRK14237 phosphate transporter ATP-binding protein; Provisional
Probab=79.83 E-value=1.1 Score=46.82 Aligned_cols=25 Identities=32% Similarity=0.397 Sum_probs=20.6
Q ss_pred eeeEEEeecCCCCchhHHhHhhhhh
Q 004481 531 LQKLLLVGCSGSGTSTIFKQAKILY 555 (750)
Q Consensus 531 ~iKLLLLGaGESGKSTILKQMKILh 555 (750)
--.+.|+|..||||||++|-|-=++
T Consensus 46 Ge~~~I~G~nGsGKSTLl~~l~Gl~ 70 (267)
T PRK14237 46 NKITALIGPSGSGKSTYLRSLNRMN 70 (267)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhcc
Confidence 3457899999999999999876554
No 410
>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.
Probab=79.74 E-value=1.2 Score=45.42 Aligned_cols=20 Identities=50% Similarity=0.772 Sum_probs=17.1
Q ss_pred eEEEeecCCCCchhHHhHhh
Q 004481 533 KLLLVGCSGSGTSTIFKQAK 552 (750)
Q Consensus 533 KLLLLGaGESGKSTILKQMK 552 (750)
-+||+|+.+||||++|-|+.
T Consensus 5 ~vlL~Gps~SGKTaLf~~L~ 24 (181)
T PF09439_consen 5 TVLLVGPSGSGKTALFSQLV 24 (181)
T ss_dssp EEEEE-STTSSHHHHHHHHH
T ss_pred eEEEEcCCCCCHHHHHHHHh
Confidence 58999999999999998865
No 411
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=79.74 E-value=1.1 Score=46.41 Aligned_cols=24 Identities=21% Similarity=0.324 Sum_probs=19.8
Q ss_pred eeeEEEeecCCCCchhHHhHhhhh
Q 004481 531 LQKLLLVGCSGSGTSTIFKQAKIL 554 (750)
Q Consensus 531 ~iKLLLLGaGESGKSTILKQMKIL 554 (750)
--.+.|+|..||||||++|-+-=+
T Consensus 28 Ge~~~i~G~nGsGKSTLl~~i~G~ 51 (258)
T PRK13548 28 GEVVAILGPNGAGKSTLLRALSGE 51 (258)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 445899999999999999976544
No 412
>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein. Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif
Probab=79.70 E-value=1.7 Score=51.28 Aligned_cols=29 Identities=28% Similarity=0.289 Sum_probs=24.2
Q ss_pred cceeeEEEeecCCCCchhHHhHhhhhhcC
Q 004481 529 RTLQKLLLVGCSGSGTSTIFKQAKILYKA 557 (750)
Q Consensus 529 kr~iKLLLLGaGESGKSTILKQMKILh~~ 557 (750)
+.--|+.++|..||||||++|-+-=+|.|
T Consensus 477 ~~Ge~vaIvG~sGsGKSTLlklL~gl~~p 505 (686)
T TIGR03797 477 EPGEFVAIVGPSGSGKSTLLRLLLGFETP 505 (686)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 45678999999999999999987666654
No 413
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=79.68 E-value=1.1 Score=46.60 Aligned_cols=26 Identities=38% Similarity=0.261 Sum_probs=20.9
Q ss_pred ceeeEEEeecCCCCchhHHhHhhhhh
Q 004481 530 TLQKLLLVGCSGSGTSTIFKQAKILY 555 (750)
Q Consensus 530 r~iKLLLLGaGESGKSTILKQMKILh 555 (750)
.--.+.|+|+.||||||++|-+-=++
T Consensus 34 ~Ge~~~I~G~nGsGKSTLl~~i~Gl~ 59 (269)
T PRK13648 34 KGQWTSIVGHNGSGKSTIAKLMIGIE 59 (269)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 34568999999999999999765444
No 414
>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional
Probab=79.46 E-value=1.1 Score=46.56 Aligned_cols=27 Identities=33% Similarity=0.391 Sum_probs=21.4
Q ss_pred ceeeEEEeecCCCCchhHHhHhhhhhc
Q 004481 530 TLQKLLLVGCSGSGTSTIFKQAKILYK 556 (750)
Q Consensus 530 r~iKLLLLGaGESGKSTILKQMKILh~ 556 (750)
.--.+.|+|..||||||++|-+-=++.
T Consensus 38 ~Ge~~~i~G~NGsGKSTLl~~l~Gl~~ 64 (267)
T PRK15112 38 EGQTLAIIGENGSGKSTLAKMLAGMIE 64 (267)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCCC
Confidence 344689999999999999997655543
No 415
>cd02026 PRK Phosphoribulokinase (PRK) is an enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. This enzyme catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=79.37 E-value=1.9 Score=46.01 Aligned_cols=19 Identities=32% Similarity=0.529 Sum_probs=16.8
Q ss_pred EEEeecCCCCchhHHhHhh
Q 004481 534 LLLVGCSGSGTSTIFKQAK 552 (750)
Q Consensus 534 LLLLGaGESGKSTILKQMK 552 (750)
+-|.|..+|||||+++.+.
T Consensus 2 igI~G~sGsGKSTl~~~L~ 20 (273)
T cd02026 2 IGVAGDSGCGKSTFLRRLT 20 (273)
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 4688999999999999876
No 416
>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein. This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.
Probab=79.28 E-value=1.2 Score=45.92 Aligned_cols=26 Identities=27% Similarity=0.221 Sum_probs=20.7
Q ss_pred ceeeEEEeecCCCCchhHHhHhhhhh
Q 004481 530 TLQKLLLVGCSGSGTSTIFKQAKILY 555 (750)
Q Consensus 530 r~iKLLLLGaGESGKSTILKQMKILh 555 (750)
.--.+.|+|..||||||++|-+-=++
T Consensus 26 ~Ge~~~i~G~nGsGKSTLl~~i~G~~ 51 (256)
T TIGR03873 26 PGSLTGLLGPNGSGKSTLLRLLAGAL 51 (256)
T ss_pred CCcEEEEECCCCCCHHHHHHHHcCCC
Confidence 34468999999999999999765443
No 417
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=79.11 E-value=1.1 Score=47.62 Aligned_cols=22 Identities=32% Similarity=0.514 Sum_probs=18.4
Q ss_pred EEeecCCCCchhHHhHhhhhhc
Q 004481 535 LLVGCSGSGTSTIFKQAKILYK 556 (750)
Q Consensus 535 LLLGaGESGKSTILKQMKILh~ 556 (750)
-|+|++||||||++|-+..++.
T Consensus 37 AlIGPSGcGKST~LR~lNRmnd 58 (253)
T COG1117 37 ALIGPSGCGKSTLLRCLNRMND 58 (253)
T ss_pred EEECCCCcCHHHHHHHHHhhcc
Confidence 5789999999999998765544
No 418
>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w
Probab=79.10 E-value=1.3 Score=44.53 Aligned_cols=24 Identities=29% Similarity=0.422 Sum_probs=20.6
Q ss_pred eEEEeecCCCCchhHHhHhhhhhc
Q 004481 533 KLLLVGCSGSGTSTIFKQAKILYK 556 (750)
Q Consensus 533 KLLLLGaGESGKSTILKQMKILh~ 556 (750)
-++|+|..||||||+++-+-.+..
T Consensus 24 ~~~i~G~nGsGKStll~al~~l~~ 47 (197)
T cd03278 24 LTAIVGPNGSGKSNIIDAIRWVLG 47 (197)
T ss_pred cEEEECCCCCCHHHHHHHHHHHhc
Confidence 578999999999999998876653
No 419
>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional
Probab=79.10 E-value=1.2 Score=46.29 Aligned_cols=26 Identities=23% Similarity=0.350 Sum_probs=21.0
Q ss_pred ceeeEEEeecCCCCchhHHhHhhhhh
Q 004481 530 TLQKLLLVGCSGSGTSTIFKQAKILY 555 (750)
Q Consensus 530 r~iKLLLLGaGESGKSTILKQMKILh 555 (750)
.--.+.|+|..||||||++|-+-=++
T Consensus 32 ~Ge~~~i~G~nGsGKSTLl~~i~G~~ 57 (265)
T PRK10253 32 DGHFTAIIGPNGCGKSTLLRTLSRLM 57 (265)
T ss_pred CCCEEEEECCCCCCHHHHHHHHcCCC
Confidence 44568999999999999999765444
No 420
>PF01443 Viral_helicase1: Viral (Superfamily 1) RNA helicase; InterPro: IPR000606 This entry includes RNA and DNA helicases. Some of the members are found in positive-strand single stranded RNA viruses. The helicase has multiple roles at different stages of viral RNA replication, as dissected by mutational analysis [].; GO: 0004386 helicase activity
Probab=79.07 E-value=1 Score=44.78 Aligned_cols=18 Identities=39% Similarity=0.720 Sum_probs=15.6
Q ss_pred EEEeecCCCCchhHHhHh
Q 004481 534 LLLVGCSGSGTSTIFKQA 551 (750)
Q Consensus 534 LLLLGaGESGKSTILKQM 551 (750)
+++.|.+||||||.++++
T Consensus 1 ~vv~G~pGsGKSt~i~~~ 18 (234)
T PF01443_consen 1 IVVHGVPGSGKSTLIKKL 18 (234)
T ss_pred CEEEcCCCCCHHHHHHHH
Confidence 478999999999988864
No 421
>cd01850 CDC_Septin CDC/Septin. Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.
Probab=79.06 E-value=1.3 Score=47.05 Aligned_cols=22 Identities=32% Similarity=0.433 Sum_probs=19.9
Q ss_pred ceeeEEEeecCCCCchhHHhHh
Q 004481 530 TLQKLLLVGCSGSGTSTIFKQA 551 (750)
Q Consensus 530 r~iKLLLLGaGESGKSTILKQM 551 (750)
-.+||+|+|..++||||++..+
T Consensus 3 ~~f~I~vvG~sg~GKSTliN~L 24 (276)
T cd01850 3 FQFNIMVVGESGLGKSTFINTL 24 (276)
T ss_pred cEEEEEEEcCCCCCHHHHHHHH
Confidence 3579999999999999999886
No 422
>cd00881 GTP_translation_factor GTP translation factor family. This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.
Probab=79.05 E-value=1.3 Score=41.80 Aligned_cols=20 Identities=15% Similarity=0.268 Sum_probs=17.7
Q ss_pred eEEEeecCCCCchhHHhHhh
Q 004481 533 KLLLVGCSGSGTSTIFKQAK 552 (750)
Q Consensus 533 KLLLLGaGESGKSTILKQMK 552 (750)
+|+++|..++||||++..+-
T Consensus 1 ~v~v~G~~~~GKStlln~l~ 20 (189)
T cd00881 1 NVGIAGHVDHGKTTLTERLL 20 (189)
T ss_pred CEEEEeCCCCCHHHHHHHHH
Confidence 47899999999999999853
No 423
>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2.7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....
Probab=79.04 E-value=1.2 Score=43.67 Aligned_cols=19 Identities=53% Similarity=0.698 Sum_probs=16.7
Q ss_pred EEEeecCCCCchhHHhHhh
Q 004481 534 LLLVGCSGSGTSTIFKQAK 552 (750)
Q Consensus 534 LLLLGaGESGKSTILKQMK 552 (750)
|+|+|+.+|||+||.+.+.
T Consensus 5 ivl~Gpsg~GK~~l~~~L~ 23 (183)
T PF00625_consen 5 IVLVGPSGSGKSTLAKRLI 23 (183)
T ss_dssp EEEESSTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 5789999999999999763
No 424
>PRK14243 phosphate transporter ATP-binding protein; Provisional
Probab=79.00 E-value=1.2 Score=46.29 Aligned_cols=24 Identities=33% Similarity=0.369 Sum_probs=20.0
Q ss_pred ceeeEEEeecCCCCchhHHhHhhh
Q 004481 530 TLQKLLLVGCSGSGTSTIFKQAKI 553 (750)
Q Consensus 530 r~iKLLLLGaGESGKSTILKQMKI 553 (750)
.--.+.|+|..||||||++|-|-=
T Consensus 35 ~Ge~~~i~G~nGsGKSTLl~~l~G 58 (264)
T PRK14243 35 KNQITAFIGPSGCGKSTILRCFNR 58 (264)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHh
Confidence 345689999999999999998653
No 425
>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional
Probab=78.99 E-value=1.2 Score=45.73 Aligned_cols=24 Identities=29% Similarity=0.391 Sum_probs=19.9
Q ss_pred eeeEEEeecCCCCchhHHhHhhhh
Q 004481 531 LQKLLLVGCSGSGTSTIFKQAKIL 554 (750)
Q Consensus 531 ~iKLLLLGaGESGKSTILKQMKIL 554 (750)
--.+.|+|..||||||++|-+-=+
T Consensus 30 Ge~~~i~G~nGsGKSTLl~~l~G~ 53 (251)
T PRK14270 30 NKITALIGPSGCGKSTFLRCLNRM 53 (251)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhc
Confidence 445899999999999999976544
No 426
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=78.92 E-value=1.3 Score=43.96 Aligned_cols=25 Identities=24% Similarity=0.240 Sum_probs=19.9
Q ss_pred ceeeEEEeecCCCCchhHHhHhhhh
Q 004481 530 TLQKLLLVGCSGSGTSTIFKQAKIL 554 (750)
Q Consensus 530 r~iKLLLLGaGESGKSTILKQMKIL 554 (750)
.--.+.|+|..||||||++|-+-=+
T Consensus 30 ~G~~~~i~G~nG~GKSTLl~~i~G~ 54 (204)
T cd03250 30 KGELVAIVGPVGSGKSSLLSALLGE 54 (204)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCc
Confidence 4456899999999999999965433
No 427
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=78.79 E-value=1.3 Score=50.25 Aligned_cols=31 Identities=26% Similarity=0.343 Sum_probs=25.0
Q ss_pred HhcceeeEEEeecCCCCchhHHhHhhhhhcC
Q 004481 527 ERRTLQKLLLVGCSGSGTSTIFKQAKILYKA 557 (750)
Q Consensus 527 ~~kr~iKLLLLGaGESGKSTILKQMKILh~~ 557 (750)
+-++--|+.++|..||||||++|-+-=+|.|
T Consensus 357 ~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p 387 (529)
T TIGR02868 357 DLPPGERVAILGPSGSGKSTLLMLLTGLLDP 387 (529)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhcCCCC
Confidence 3345678999999999999999987656653
No 428
>cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=78.75 E-value=1.3 Score=45.56 Aligned_cols=24 Identities=25% Similarity=0.333 Sum_probs=20.4
Q ss_pred eEEEeecCCCCchhHHhHhhhhhc
Q 004481 533 KLLLVGCSGSGTSTIFKQAKILYK 556 (750)
Q Consensus 533 KLLLLGaGESGKSTILKQMKILh~ 556 (750)
-+.++|..|||||||++-+..+-.
T Consensus 27 ~~~IvG~NGsGKStll~Ai~~ll~ 50 (251)
T cd03273 27 FNAITGLNGSGKSNILDAICFVLG 50 (251)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhc
Confidence 368999999999999999877643
No 429
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=78.73 E-value=1.2 Score=45.90 Aligned_cols=26 Identities=31% Similarity=0.471 Sum_probs=21.1
Q ss_pred ceeeEEEeecCCCCchhHHhHhhhhh
Q 004481 530 TLQKLLLVGCSGSGTSTIFKQAKILY 555 (750)
Q Consensus 530 r~iKLLLLGaGESGKSTILKQMKILh 555 (750)
.--.+.|+|..||||||++|-+-=++
T Consensus 30 ~Ge~~~l~G~nGsGKSTLl~~i~G~~ 55 (257)
T PRK10619 30 AGDVISIIGSSGSGKSTFLRCINFLE 55 (257)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 34568899999999999999766554
No 430
>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=78.58 E-value=1.2 Score=46.72 Aligned_cols=26 Identities=27% Similarity=0.299 Sum_probs=21.2
Q ss_pred ceeeEEEeecCCCCchhHHhHhhhhh
Q 004481 530 TLQKLLLVGCSGSGTSTIFKQAKILY 555 (750)
Q Consensus 530 r~iKLLLLGaGESGKSTILKQMKILh 555 (750)
.--.+.|+|..||||||++|-|-=++
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 52 (274)
T PRK13644 27 KGEYIGIIGKNGSGKSTLALHLNGLL 52 (274)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 44568999999999999999876444
No 431
>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional
Probab=78.55 E-value=1.2 Score=46.96 Aligned_cols=25 Identities=28% Similarity=0.279 Sum_probs=20.3
Q ss_pred eeeEEEeecCCCCchhHHhHhhhhh
Q 004481 531 LQKLLLVGCSGSGTSTIFKQAKILY 555 (750)
Q Consensus 531 ~iKLLLLGaGESGKSTILKQMKILh 555 (750)
--.+.|+|..||||||++|-+-=++
T Consensus 27 Ge~~~l~G~nGsGKSTLl~~laG~~ 51 (272)
T PRK13547 27 GRVTALLGRNGAGKSTLLKALAGDL 51 (272)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3468999999999999999875443
No 432
>PRK03695 vitamin B12-transporter ATPase; Provisional
Probab=78.54 E-value=1.2 Score=45.86 Aligned_cols=22 Identities=36% Similarity=0.501 Sum_probs=18.9
Q ss_pred eeeEEEeecCCCCchhHHhHhh
Q 004481 531 LQKLLLVGCSGSGTSTIFKQAK 552 (750)
Q Consensus 531 ~iKLLLLGaGESGKSTILKQMK 552 (750)
--.+.|+|..||||||++|-+-
T Consensus 22 Gei~~l~G~nGsGKSTLl~~l~ 43 (248)
T PRK03695 22 GEILHLVGPNGAGKSTLLARMA 43 (248)
T ss_pred CCEEEEECCCCCCHHHHHHHHc
Confidence 3468999999999999999754
No 433
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=78.47 E-value=1.3 Score=40.57 Aligned_cols=19 Identities=37% Similarity=0.476 Sum_probs=16.4
Q ss_pred EEEeecCCCCchhHHhHhh
Q 004481 534 LLLVGCSGSGTSTIFKQAK 552 (750)
Q Consensus 534 LLLLGaGESGKSTILKQMK 552 (750)
+++.|..||||||+.|.+-
T Consensus 2 I~i~G~~GsGKst~a~~la 20 (147)
T cd02020 2 IAIDGPAGSGKSTVAKLLA 20 (147)
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 6789999999999988654
No 434
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein.
Probab=78.45 E-value=1.3 Score=45.18 Aligned_cols=26 Identities=38% Similarity=0.382 Sum_probs=20.8
Q ss_pred ceeeEEEeecCCCCchhHHhHhhhhh
Q 004481 530 TLQKLLLVGCSGSGTSTIFKQAKILY 555 (750)
Q Consensus 530 r~iKLLLLGaGESGKSTILKQMKILh 555 (750)
.--.+.|+|..||||||++|-|-=++
T Consensus 25 ~Ge~~~l~G~nGsGKSTLl~~i~G~~ 50 (237)
T TIGR00968 25 TGSLVALLGPSGSGKSTLLRIIAGLE 50 (237)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 44568999999999999999765443
No 435
>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.
Probab=78.45 E-value=1.3 Score=44.47 Aligned_cols=26 Identities=31% Similarity=0.363 Sum_probs=21.4
Q ss_pred ceeeEEEeecCCCCchhHHhHhhhhh
Q 004481 530 TLQKLLLVGCSGSGTSTIFKQAKILY 555 (750)
Q Consensus 530 r~iKLLLLGaGESGKSTILKQMKILh 555 (750)
+.-.+.|+|..||||||++|-|-=++
T Consensus 30 ~G~~~~I~G~nGsGKStLl~~l~G~~ 55 (220)
T TIGR02982 30 PGEIVILTGPSGSGKTTLLTLIGGLR 55 (220)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 44578999999999999999876544
No 436
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=78.39 E-value=1.3 Score=46.57 Aligned_cols=27 Identities=30% Similarity=0.411 Sum_probs=21.7
Q ss_pred ceeeEEEeecCCCCchhHHhHhhhhhc
Q 004481 530 TLQKLLLVGCSGSGTSTIFKQAKILYK 556 (750)
Q Consensus 530 r~iKLLLLGaGESGKSTILKQMKILh~ 556 (750)
.--.+.|+|..||||||++|-|-=++.
T Consensus 30 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 56 (274)
T PRK13647 30 EGSKTALLGPNGAGKSTLLLHLNGIYL 56 (274)
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcCCC
Confidence 345689999999999999998765543
No 437
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=78.37 E-value=1.2 Score=47.66 Aligned_cols=19 Identities=32% Similarity=0.539 Sum_probs=16.9
Q ss_pred EEEeecCCCCchhHHhHhh
Q 004481 534 LLLVGCSGSGTSTIFKQAK 552 (750)
Q Consensus 534 LLLLGaGESGKSTILKQMK 552 (750)
+.|||+.||||||++|-+-
T Consensus 34 ~gllG~NGAGKTTllk~l~ 52 (293)
T COG1131 34 FGLLGPNGAGKTTLLKILA 52 (293)
T ss_pred EEEECCCCCCHHHHHHHHh
Confidence 6899999999999999754
No 438
>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=78.34 E-value=1.2 Score=49.12 Aligned_cols=20 Identities=35% Similarity=0.559 Sum_probs=17.5
Q ss_pred eEEEeecCCCCchhHHhHhh
Q 004481 533 KLLLVGCSGSGTSTIFKQAK 552 (750)
Q Consensus 533 KLLLLGaGESGKSTILKQMK 552 (750)
-+-|||++||||||+++-|-
T Consensus 30 ~vaLlGpSGaGKsTlLRiIA 49 (345)
T COG1118 30 LVALLGPSGAGKSTLLRIIA 49 (345)
T ss_pred EEEEECCCCCcHHHHHHHHh
Confidence 47899999999999999764
No 439
>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=78.33 E-value=1.3 Score=46.82 Aligned_cols=25 Identities=36% Similarity=0.485 Sum_probs=20.4
Q ss_pred eeeEEEeecCCCCchhHHhHhhhhh
Q 004481 531 LQKLLLVGCSGSGTSTIFKQAKILY 555 (750)
Q Consensus 531 ~iKLLLLGaGESGKSTILKQMKILh 555 (750)
--.+.|+|..||||||++|-+-=+.
T Consensus 33 Ge~~~iiG~NGaGKSTLl~~l~Gl~ 57 (287)
T PRK13641 33 GSFVALVGHTGSGKSTLMQHFNALL 57 (287)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3458899999999999999766443
No 440
>PLN02674 adenylate kinase
Probab=78.30 E-value=1.6 Score=46.28 Aligned_cols=29 Identities=31% Similarity=0.376 Sum_probs=23.0
Q ss_pred hcceeeEEEeecCCCCchhHHhHhhhhhc
Q 004481 528 RRTLQKLLLVGCSGSGTSTIFKQAKILYK 556 (750)
Q Consensus 528 ~kr~iKLLLLGaGESGKSTILKQMKILh~ 556 (750)
.+...+|+|+|+.||||+|+.+.+.--|+
T Consensus 28 ~~~~~~i~l~G~PGsGKgT~a~~La~~~~ 56 (244)
T PLN02674 28 SKPDKRLILIGPPGSGKGTQSPIIKDEYC 56 (244)
T ss_pred cccCceEEEECCCCCCHHHHHHHHHHHcC
Confidence 34567899999999999999887655444
No 441
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=78.27 E-value=1.4 Score=41.39 Aligned_cols=20 Identities=25% Similarity=0.396 Sum_probs=18.4
Q ss_pred eEEEeecCCCCchhHHhHhh
Q 004481 533 KLLLVGCSGSGTSTIFKQAK 552 (750)
Q Consensus 533 KLLLLGaGESGKSTILKQMK 552 (750)
+++++|..++||||++.++.
T Consensus 85 ~~~~~G~~~vGKstlin~l~ 104 (141)
T cd01857 85 TIGLVGYPNVGKSSLINALV 104 (141)
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 89999999999999998873
No 442
>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional
Probab=78.22 E-value=1.3 Score=46.21 Aligned_cols=26 Identities=31% Similarity=0.328 Sum_probs=21.2
Q ss_pred ceeeEEEeecCCCCchhHHhHhhhhh
Q 004481 530 TLQKLLLVGCSGSGTSTIFKQAKILY 555 (750)
Q Consensus 530 r~iKLLLLGaGESGKSTILKQMKILh 555 (750)
.--.+.|+|..||||||++|-+-=++
T Consensus 37 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 62 (268)
T PRK10419 37 SGETVALLGRSGCGKSTLARLLVGLE 62 (268)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 34568999999999999999766554
No 443
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=78.22 E-value=1.3 Score=46.97 Aligned_cols=27 Identities=30% Similarity=0.415 Sum_probs=21.8
Q ss_pred ceeeEEEeecCCCCchhHHhHhhhhhc
Q 004481 530 TLQKLLLVGCSGSGTSTIFKQAKILYK 556 (750)
Q Consensus 530 r~iKLLLLGaGESGKSTILKQMKILh~ 556 (750)
.--.+.|+|..||||||++|-|-=++.
T Consensus 31 ~Ge~v~i~G~nGsGKSTLl~~l~Gl~~ 57 (288)
T PRK13643 31 KGSYTALIGHTGSGKSTLLQHLNGLLQ 57 (288)
T ss_pred CCCEEEEECCCCChHHHHHHHHhcCCC
Confidence 345789999999999999998765543
No 444
>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional
Probab=78.19 E-value=1.3 Score=46.55 Aligned_cols=25 Identities=32% Similarity=0.235 Sum_probs=20.3
Q ss_pred ceeeEEEeecCCCCchhHHhHhhhh
Q 004481 530 TLQKLLLVGCSGSGTSTIFKQAKIL 554 (750)
Q Consensus 530 r~iKLLLLGaGESGKSTILKQMKIL 554 (750)
.--.+.|+|..||||||++|-+-=+
T Consensus 49 ~Ge~~~liG~NGsGKSTLlk~L~Gl 73 (264)
T PRK13546 49 EGDVIGLVGINGSGKSTLSNIIGGS 73 (264)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3456889999999999999976544
No 445
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=78.17 E-value=1.3 Score=47.29 Aligned_cols=24 Identities=25% Similarity=0.296 Sum_probs=19.8
Q ss_pred eeEEEeecCCCCchhHHhHhhhhh
Q 004481 532 QKLLLVGCSGSGTSTIFKQAKILY 555 (750)
Q Consensus 532 iKLLLLGaGESGKSTILKQMKILh 555 (750)
--+.|+|+.||||||++|-|-=++
T Consensus 29 ei~~l~G~NGaGKTTLl~~l~Gl~ 52 (301)
T TIGR03522 29 RIVGFLGPNGAGKSTTMKIITGYL 52 (301)
T ss_pred eEEEEECCCCCCHHHHHHHHhCCC
Confidence 348999999999999999875443
No 446
>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional
Probab=78.13 E-value=1.3 Score=45.30 Aligned_cols=26 Identities=31% Similarity=0.405 Sum_probs=20.9
Q ss_pred ceeeEEEeecCCCCchhHHhHhhhhh
Q 004481 530 TLQKLLLVGCSGSGTSTIFKQAKILY 555 (750)
Q Consensus 530 r~iKLLLLGaGESGKSTILKQMKILh 555 (750)
.--.+.|+|..||||||++|-+-=++
T Consensus 28 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 53 (249)
T PRK14253 28 ARQVTALIGPSGCGKSTLLRCLNRMN 53 (249)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 34468999999999999999875444
No 447
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=78.11 E-value=1.4 Score=43.78 Aligned_cols=21 Identities=33% Similarity=0.373 Sum_probs=17.7
Q ss_pred EEEeecCCCCchhHHhHhhhh
Q 004481 534 LLLVGCSGSGTSTIFKQAKIL 554 (750)
Q Consensus 534 LLLLGaGESGKSTILKQMKIL 554 (750)
|++-|..+|||||+.+++.-.
T Consensus 2 i~i~G~sgsGKttla~~l~~~ 22 (179)
T cd02028 2 VGIAGPSGSGKTTFAKKLSNQ 22 (179)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 578899999999999887544
No 448
>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional
Probab=78.06 E-value=1.3 Score=46.76 Aligned_cols=23 Identities=26% Similarity=0.361 Sum_probs=19.4
Q ss_pred eeeEEEeecCCCCchhHHhHhhh
Q 004481 531 LQKLLLVGCSGSGTSTIFKQAKI 553 (750)
Q Consensus 531 ~iKLLLLGaGESGKSTILKQMKI 553 (750)
--.+.|+|..||||||++|-+-=
T Consensus 65 Ge~~~l~G~nGsGKSTLl~~L~G 87 (286)
T PRK14275 65 KYVTAIIGPSGCGKSTFLRAINR 87 (286)
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 44678999999999999998753
No 449
>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=78.05 E-value=1.3 Score=46.49 Aligned_cols=26 Identities=27% Similarity=0.406 Sum_probs=20.5
Q ss_pred ceeeEEEeecCCCCchhHHhHhhhhh
Q 004481 530 TLQKLLLVGCSGSGTSTIFKQAKILY 555 (750)
Q Consensus 530 r~iKLLLLGaGESGKSTILKQMKILh 555 (750)
.--.+.|+|..||||||++|-|-=++
T Consensus 27 ~Ge~~~l~G~nGsGKSTLl~~i~Gl~ 52 (275)
T PRK13639 27 KGEMVALLGPNGAGKSTLFLHFNGIL 52 (275)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 34468999999999999999765443
No 450
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=78.01 E-value=2 Score=42.63 Aligned_cols=27 Identities=26% Similarity=0.357 Sum_probs=20.0
Q ss_pred EEEeecCCCCchhHHhHhhhhhcCCCC
Q 004481 534 LLLVGCSGSGTSTIFKQAKILYKAVPF 560 (750)
Q Consensus 534 LLLLGaGESGKSTILKQMKILh~~~GF 560 (750)
|.+=|+++|||||+.+++.-+....++
T Consensus 2 IgI~G~sgSGKTTla~~L~~~L~~~~~ 28 (194)
T PF00485_consen 2 IGIAGPSGSGKTTLAKRLAQILNKRGI 28 (194)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHTTCTT
T ss_pred EEEECCCCCCHHHHHHHHHHHhCccCc
Confidence 456799999999999988655442343
No 451
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=77.97 E-value=1.3 Score=46.27 Aligned_cols=25 Identities=36% Similarity=0.371 Sum_probs=20.3
Q ss_pred eeeEEEeecCCCCchhHHhHhhhhh
Q 004481 531 LQKLLLVGCSGSGTSTIFKQAKILY 555 (750)
Q Consensus 531 ~iKLLLLGaGESGKSTILKQMKILh 555 (750)
--.+.|+|..||||||++|-+--+.
T Consensus 35 Ge~~~l~G~nGsGKSTLl~~l~Gl~ 59 (271)
T PRK13632 35 GEYVAILGHNGSGKSTISKILTGLL 59 (271)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 4468899999999999999765443
No 452
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=77.96 E-value=1.3 Score=47.54 Aligned_cols=26 Identities=23% Similarity=0.241 Sum_probs=21.2
Q ss_pred eeeEEEeecCCCCchhHHhHhhhhhc
Q 004481 531 LQKLLLVGCSGSGTSTIFKQAKILYK 556 (750)
Q Consensus 531 ~iKLLLLGaGESGKSTILKQMKILh~ 556 (750)
--.+.|||+.||||||++|.|-=++.
T Consensus 33 Gei~gllGpNGaGKSTLl~~l~Gl~~ 58 (306)
T PRK13537 33 GECFGLLGPNGAGKTTTLRMLLGLTH 58 (306)
T ss_pred CcEEEEECCCCCCHHHHHHHHhcCCC
Confidence 34589999999999999998765543
No 453
>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional
Probab=77.89 E-value=1.4 Score=46.44 Aligned_cols=26 Identities=23% Similarity=0.354 Sum_probs=20.9
Q ss_pred ceeeEEEeecCCCCchhHHhHhhhhh
Q 004481 530 TLQKLLLVGCSGSGTSTIFKQAKILY 555 (750)
Q Consensus 530 r~iKLLLLGaGESGKSTILKQMKILh 555 (750)
.--.+.|+|..||||||++|-+-=++
T Consensus 46 ~Ge~~~I~G~nGsGKSTLl~~l~Gl~ 71 (276)
T PRK14271 46 ARAVTSLMGPTGSGKTTFLRTLNRMN 71 (276)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhccC
Confidence 34468999999999999999875443
No 454
>PRK00889 adenylylsulfate kinase; Provisional
Probab=77.84 E-value=1.4 Score=42.70 Aligned_cols=20 Identities=30% Similarity=0.526 Sum_probs=16.9
Q ss_pred eEEEeecCCCCchhHHhHhh
Q 004481 533 KLLLVGCSGSGTSTIFKQAK 552 (750)
Q Consensus 533 KLLLLGaGESGKSTILKQMK 552 (750)
=+.|.|..||||||+.+++-
T Consensus 6 ~i~~~G~~GsGKST~a~~la 25 (175)
T PRK00889 6 TVWFTGLSGAGKTTIARALA 25 (175)
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 36788999999999998754
No 455
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=77.76 E-value=1.3 Score=46.43 Aligned_cols=26 Identities=23% Similarity=0.516 Sum_probs=21.1
Q ss_pred ceeeEEEeecCCCCchhHHhHhhhhh
Q 004481 530 TLQKLLLVGCSGSGTSTIFKQAKILY 555 (750)
Q Consensus 530 r~iKLLLLGaGESGKSTILKQMKILh 555 (750)
.--.+.|+|..||||||++|-+-=++
T Consensus 29 ~Ge~~~i~G~NGsGKSTLl~~l~Gl~ 54 (277)
T PRK13652 29 RNSRIAVIGPNGAGKSTLFRHFNGIL 54 (277)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 34468999999999999999876554
No 456
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=77.75 E-value=1.3 Score=49.92 Aligned_cols=24 Identities=25% Similarity=0.286 Sum_probs=19.8
Q ss_pred eeeEEEeecCCCCchhHHhHhhhh
Q 004481 531 LQKLLLVGCSGSGTSTIFKQAKIL 554 (750)
Q Consensus 531 ~iKLLLLGaGESGKSTILKQMKIL 554 (750)
--.+.|+|+.||||||++|-+-=+
T Consensus 29 Ge~~~liG~nGsGKSTLl~~l~G~ 52 (490)
T PRK10938 29 GDSWAFVGANGSGKSALARALAGE 52 (490)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcc
Confidence 345899999999999999976543
No 457
>cd03288 ABCC_SUR2 The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=77.72 E-value=1.4 Score=45.59 Aligned_cols=25 Identities=28% Similarity=0.260 Sum_probs=20.3
Q ss_pred ceeeEEEeecCCCCchhHHhHhhhh
Q 004481 530 TLQKLLLVGCSGSGTSTIFKQAKIL 554 (750)
Q Consensus 530 r~iKLLLLGaGESGKSTILKQMKIL 554 (750)
.--.+.|+|..||||||++|-+-=+
T Consensus 46 ~Ge~~~i~G~nGsGKSTLl~~l~Gl 70 (257)
T cd03288 46 PGQKVGICGRTGSGKSSLSLAFFRM 70 (257)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHcc
Confidence 4456899999999999999976433
No 458
>PRK05541 adenylylsulfate kinase; Provisional
Probab=77.72 E-value=1.4 Score=42.69 Aligned_cols=22 Identities=32% Similarity=0.368 Sum_probs=18.4
Q ss_pred eeeEEEeecCCCCchhHHhHhh
Q 004481 531 LQKLLLVGCSGSGTSTIFKQAK 552 (750)
Q Consensus 531 ~iKLLLLGaGESGKSTILKQMK 552 (750)
..-|++.|..+|||||+.+.+.
T Consensus 7 ~~~I~i~G~~GsGKst~a~~l~ 28 (176)
T PRK05541 7 GYVIWITGLAGSGKTTIAKALY 28 (176)
T ss_pred CCEEEEEcCCCCCHHHHHHHHH
Confidence 3467889999999999998753
No 459
>cd03275 ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=77.61 E-value=1.5 Score=45.19 Aligned_cols=23 Identities=22% Similarity=0.456 Sum_probs=20.7
Q ss_pred EEEeecCCCCchhHHhHhhhhhc
Q 004481 534 LLLVGCSGSGTSTIFKQAKILYK 556 (750)
Q Consensus 534 LLLLGaGESGKSTILKQMKILh~ 556 (750)
.+|+|..|||||||++.+..+-.
T Consensus 25 ~~i~G~NGsGKStll~ai~~~l~ 47 (247)
T cd03275 25 TCIIGPNGSGKSNLMDAISFVLG 47 (247)
T ss_pred EEEECCCCCCHHHHHHHHHHHhC
Confidence 58999999999999999987764
No 460
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=77.59 E-value=1.5 Score=47.58 Aligned_cols=26 Identities=19% Similarity=0.227 Sum_probs=20.3
Q ss_pred cceeeEEEeecCCCCchhHHhHhhhh
Q 004481 529 RTLQKLLLVGCSGSGTSTIFKQAKIL 554 (750)
Q Consensus 529 kr~iKLLLLGaGESGKSTILKQMKIL 554 (750)
+...=+-+.|+.+|||||+++.|.-+
T Consensus 60 ~~p~IIGIaG~~GSGKSTlar~L~~l 85 (290)
T TIGR00554 60 KIPYIISIAGSVAVGKSTTARILQAL 85 (290)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 34456778999999999999876543
No 461
>cd01672 TMPK Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor. TMPK represents the rate-limiting step in either de novo or salvage biosynthesis of thymidine triphosphate (TTP).
Probab=77.58 E-value=1.5 Score=42.03 Aligned_cols=19 Identities=21% Similarity=0.543 Sum_probs=17.0
Q ss_pred EEEeecCCCCchhHHhHhh
Q 004481 534 LLLVGCSGSGTSTIFKQAK 552 (750)
Q Consensus 534 LLLLGaGESGKSTILKQMK 552 (750)
|.+.|..+|||||+.|.+.
T Consensus 3 I~ieG~~GsGKtT~~~~L~ 21 (200)
T cd01672 3 IVFEGIDGAGKTTLIELLA 21 (200)
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 5788999999999999875
No 462
>TIGR02173 cyt_kin_arch cytidylate kinase, putative. Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by TIGR00017.
Probab=77.56 E-value=1.6 Score=41.37 Aligned_cols=20 Identities=30% Similarity=0.419 Sum_probs=17.9
Q ss_pred eEEEeecCCCCchhHHhHhh
Q 004481 533 KLLLVGCSGSGTSTIFKQAK 552 (750)
Q Consensus 533 KLLLLGaGESGKSTILKQMK 552 (750)
.|.+.|..||||||+.+.+.
T Consensus 2 iI~i~G~~GSGKstia~~la 21 (171)
T TIGR02173 2 IITISGPPGSGKTTVAKILA 21 (171)
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 58899999999999999874
No 463
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=77.55 E-value=1.4 Score=48.13 Aligned_cols=27 Identities=26% Similarity=0.465 Sum_probs=21.3
Q ss_pred ceeeEEEeecCCCCchhHHhHhhhhhc
Q 004481 530 TLQKLLLVGCSGSGTSTIFKQAKILYK 556 (750)
Q Consensus 530 r~iKLLLLGaGESGKSTILKQMKILh~ 556 (750)
.--.+.|+|..||||||++|-+--++.
T Consensus 30 ~Gei~~iiG~nGsGKSTLlk~L~Gl~~ 56 (343)
T PRK11153 30 AGEIFGVIGASGAGKSTLIRCINLLER 56 (343)
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCC
Confidence 344678999999999999997765543
No 464
>PF12846 AAA_10: AAA-like domain
Probab=77.53 E-value=1.3 Score=44.88 Aligned_cols=19 Identities=37% Similarity=0.705 Sum_probs=17.1
Q ss_pred eEEEeecCCCCchhHHhHh
Q 004481 533 KLLLVGCSGSGTSTIFKQA 551 (750)
Q Consensus 533 KLLLLGaGESGKSTILKQM 551 (750)
.++++|..||||||++|++
T Consensus 3 h~~i~G~tGsGKT~~~~~l 21 (304)
T PF12846_consen 3 HTLILGKTGSGKTTLLKNL 21 (304)
T ss_pred eEEEECCCCCcHHHHHHHH
Confidence 4789999999999999965
No 465
>cd03284 ABC_MutS1 MutS1 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clam
Probab=77.51 E-value=1.6 Score=44.65 Aligned_cols=22 Identities=36% Similarity=0.516 Sum_probs=18.9
Q ss_pred eeEEEeecCCCCchhHHhHhhh
Q 004481 532 QKLLLVGCSGSGTSTIFKQAKI 553 (750)
Q Consensus 532 iKLLLLGaGESGKSTILKQMKI 553 (750)
-.++|.|+.+|||||++|++-+
T Consensus 31 ~~~~l~Gpn~sGKstllr~i~~ 52 (216)
T cd03284 31 QILLITGPNMAGKSTYLRQVAL 52 (216)
T ss_pred eEEEEECCCCCChHHHHHHHHH
Confidence 3478999999999999999754
No 466
>cd00065 FYVE FYVE domain; Zinc-binding domain; targets proteins to membrane lipids via interaction with phosphatidylinositol-3-phosphate, PI3P; present in Fab1, YOTB, Vac1, and EEA1;
Probab=77.50 E-value=0.94 Score=36.59 Aligned_cols=47 Identities=23% Similarity=0.546 Sum_probs=35.7
Q ss_pred CceecccCC-ceeeeeeeeeecCCccccccchhccC-----CCcCCccccccc
Q 004481 272 GSCYRCFKG-NRFTEKEVCIVCDAKYCCNCVLRAMG-----SMPEGRKCVTCI 318 (750)
Q Consensus 272 ~~c~~c~~~-~~~~~~e~c~vc~~~yc~~cv~~~mg-----~m~egrkc~~c~ 318 (750)
..|..|.+. +.+.-|+.|-.||..+|.+|...-+= ....-|-|..|.
T Consensus 3 ~~C~~C~~~F~~~~rk~~Cr~Cg~~~C~~C~~~~~~~~~~~~~~~~rvC~~C~ 55 (57)
T cd00065 3 SSCMGCGKPFTLTRRRHHCRNCGRIFCSKCSSNRIPLPSMGGGKPVRVCDSCY 55 (57)
T ss_pred CcCcccCccccCCccccccCcCcCCcChHHcCCeeecCcccCCCccEeChHHh
Confidence 469999986 56667999999999999999765433 344557777775
No 467
>PRK14252 phosphate ABC transporter ATP-binding protein; Provisional
Probab=77.50 E-value=1.4 Score=45.63 Aligned_cols=25 Identities=32% Similarity=0.393 Sum_probs=20.2
Q ss_pred ceeeEEEeecCCCCchhHHhHhhhh
Q 004481 530 TLQKLLLVGCSGSGTSTIFKQAKIL 554 (750)
Q Consensus 530 r~iKLLLLGaGESGKSTILKQMKIL 554 (750)
.--.+.|+|..||||||++|-+-=+
T Consensus 41 ~Ge~~~i~G~nGsGKSTLl~~l~Gl 65 (265)
T PRK14252 41 EKQVTALIGPSGCGKSTFLRCFNRM 65 (265)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcc
Confidence 3446899999999999999976533
No 468
>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional
Probab=77.40 E-value=1.4 Score=47.87 Aligned_cols=24 Identities=42% Similarity=0.232 Sum_probs=19.5
Q ss_pred eeeEEEeecCCCCchhHHhHhhhh
Q 004481 531 LQKLLLVGCSGSGTSTIFKQAKIL 554 (750)
Q Consensus 531 ~iKLLLLGaGESGKSTILKQMKIL 554 (750)
--.+.|+|.+||||||++|-+-=+
T Consensus 33 Ge~~~ivG~sGsGKSTLl~~i~Gl 56 (330)
T PRK15093 33 GEIRGLVGESGSGKSLIAKAICGV 56 (330)
T ss_pred CCEEEEECCCCCCHHHHHHHHHcc
Confidence 345899999999999999975444
No 469
>cd02022 DPCK Dephospho-coenzyme A kinase (DPCK, EC 2.7.1.24) catalyzes the phosphorylation of dephosphocoenzyme A (dCoA) to yield CoA, which is the final step in CoA biosynthesis.
Probab=77.40 E-value=1.5 Score=43.18 Aligned_cols=21 Identities=43% Similarity=0.398 Sum_probs=18.4
Q ss_pred eEEEeecCCCCchhHHhHhhh
Q 004481 533 KLLLVGCSGSGTSTIFKQAKI 553 (750)
Q Consensus 533 KLLLLGaGESGKSTILKQMKI 553 (750)
.|.|.|..+|||||+.+.++-
T Consensus 1 ii~itG~~gsGKst~~~~l~~ 21 (179)
T cd02022 1 IIGLTGGIGSGKSTVAKLLKE 21 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 378999999999999998765
No 470
>PRK13536 nodulation factor exporter subunit NodI; Provisional
Probab=77.31 E-value=1.4 Score=48.32 Aligned_cols=26 Identities=27% Similarity=0.238 Sum_probs=21.1
Q ss_pred eeeEEEeecCCCCchhHHhHhhhhhc
Q 004481 531 LQKLLLVGCSGSGTSTIFKQAKILYK 556 (750)
Q Consensus 531 ~iKLLLLGaGESGKSTILKQMKILh~ 556 (750)
--.+.|+|+.||||||++|.|-=++.
T Consensus 67 Gei~gLlGpNGaGKSTLl~~L~Gl~~ 92 (340)
T PRK13536 67 GECFGLLGPNGAGKSTIARMILGMTS 92 (340)
T ss_pred CCEEEEECCCCCCHHHHHHHHHcCCC
Confidence 34578999999999999998765544
No 471
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=77.29 E-value=1.4 Score=48.65 Aligned_cols=24 Identities=33% Similarity=0.463 Sum_probs=19.9
Q ss_pred eeEEEeecCCCCchhHHhHhhhhh
Q 004481 532 QKLLLVGCSGSGTSTIFKQAKILY 555 (750)
Q Consensus 532 iKLLLLGaGESGKSTILKQMKILh 555 (750)
-.+.|+|..||||||++|-+-=++
T Consensus 30 e~~~l~G~nGsGKSTLL~~iaGl~ 53 (369)
T PRK11000 30 EFVVFVGPSGCGKSTLLRMIAGLE 53 (369)
T ss_pred CEEEEECCCCCcHHHHHHHHhCCC
Confidence 368999999999999999765443
No 472
>PF13476 AAA_23: AAA domain; PDB: 3AV0_B 3AUY_B 3AUX_A 2O5V_A 3QG5_B 3QF7_A 3THO_A.
Probab=77.29 E-value=1.6 Score=41.69 Aligned_cols=23 Identities=30% Similarity=0.450 Sum_probs=20.0
Q ss_pred EEEeecCCCCchhHHhHhhhhhc
Q 004481 534 LLLVGCSGSGTSTIFKQAKILYK 556 (750)
Q Consensus 534 LLLLGaGESGKSTILKQMKILh~ 556 (750)
.++.|..|+|||||+.-+.++-.
T Consensus 22 ~vi~G~Ng~GKStil~ai~~~L~ 44 (202)
T PF13476_consen 22 NVIYGPNGSGKSTILEAIRYALG 44 (202)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHc
Confidence 47889999999999999887654
No 473
>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein. This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.
Probab=77.22 E-value=1.4 Score=48.26 Aligned_cols=23 Identities=30% Similarity=0.380 Sum_probs=19.4
Q ss_pred eEEEeecCCCCchhHHhHhhhhh
Q 004481 533 KLLLVGCSGSGTSTIFKQAKILY 555 (750)
Q Consensus 533 KLLLLGaGESGKSTILKQMKILh 555 (750)
.+.|+|+.||||||++|-|-=++
T Consensus 25 i~~l~G~nGsGKSTLl~~iaGl~ 47 (354)
T TIGR02142 25 VTAIFGRSGSGKTTLIRLIAGLT 47 (354)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57899999999999999765444
No 474
>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=77.18 E-value=1.5 Score=47.62 Aligned_cols=27 Identities=33% Similarity=0.449 Sum_probs=22.1
Q ss_pred ceeeEEEeecCCCCchhHHhHhhhhhc
Q 004481 530 TLQKLLLVGCSGSGTSTIFKQAKILYK 556 (750)
Q Consensus 530 r~iKLLLLGaGESGKSTILKQMKILh~ 556 (750)
.--.+.|+|..||||||++|-|-=++.
T Consensus 51 ~Ge~~~I~G~nGsGKSTLl~~L~Gl~~ 77 (320)
T PRK13631 51 KNKIYFIIGNSGSGKSTLVTHFNGLIK 77 (320)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 344689999999999999998776554
No 475
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=77.00 E-value=1.4 Score=50.09 Aligned_cols=24 Identities=25% Similarity=0.367 Sum_probs=20.2
Q ss_pred eeeEEEeecCCCCchhHHhHhhhh
Q 004481 531 LQKLLLVGCSGSGTSTIFKQAKIL 554 (750)
Q Consensus 531 ~iKLLLLGaGESGKSTILKQMKIL 554 (750)
--.+.|+|+.||||||++|-+-=+
T Consensus 26 Ge~~~iiG~nGsGKSTLl~~l~Gl 49 (520)
T TIGR03269 26 GEVLGILGRSGAGKSVLMHVLRGM 49 (520)
T ss_pred CCEEEEECCCCCCHHHHHHHHhhc
Confidence 456899999999999999987544
No 476
>PRK11144 modC molybdate transporter ATP-binding protein; Provisional
Probab=76.89 E-value=1.5 Score=48.04 Aligned_cols=23 Identities=22% Similarity=0.356 Sum_probs=19.3
Q ss_pred eeEEEeecCCCCchhHHhHhhhh
Q 004481 532 QKLLLVGCSGSGTSTIFKQAKIL 554 (750)
Q Consensus 532 iKLLLLGaGESGKSTILKQMKIL 554 (750)
-.+.|+|+.||||||++|-+-=+
T Consensus 25 e~~~l~G~nGsGKSTLl~~iaGl 47 (352)
T PRK11144 25 GITAIFGRSGAGKTSLINAISGL 47 (352)
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 36899999999999999976533
No 477
>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein. This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.
Probab=76.89 E-value=1.4 Score=50.34 Aligned_cols=31 Identities=35% Similarity=0.511 Sum_probs=24.9
Q ss_pred HhcceeeEEEeecCCCCchhHHhHhhhhhcC
Q 004481 527 ERRTLQKLLLVGCSGSGTSTIFKQAKILYKA 557 (750)
Q Consensus 527 ~~kr~iKLLLLGaGESGKSTILKQMKILh~~ 557 (750)
+-++--+++++|..||||||++|-+-=+|.|
T Consensus 362 ~i~~Ge~i~IvG~sGsGKSTLlklL~gl~~p 392 (576)
T TIGR02204 362 TVRPGETVALVGPSGAGKSTLFQLLLRFYDP 392 (576)
T ss_pred EecCCCEEEEECCCCCCHHHHHHHHHhccCC
Confidence 3446678999999999999999987656543
No 478
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=76.86 E-value=1.6 Score=44.41 Aligned_cols=26 Identities=23% Similarity=0.296 Sum_probs=21.2
Q ss_pred ceeeEEEeecCCCCchhHHhHhhhhh
Q 004481 530 TLQKLLLVGCSGSGTSTIFKQAKILY 555 (750)
Q Consensus 530 r~iKLLLLGaGESGKSTILKQMKILh 555 (750)
.--.+.|+|..||||||++|-+-=++
T Consensus 25 ~Ge~~~i~G~nGsGKSTLl~~l~g~~ 50 (232)
T cd03300 25 EGEFFTLLGPSGCGKTTLLRLIAGFE 50 (232)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 44578999999999999999765444
No 479
>PRK15467 ethanolamine utilization protein EutP; Provisional
Probab=76.81 E-value=1.6 Score=41.99 Aligned_cols=20 Identities=30% Similarity=0.748 Sum_probs=18.2
Q ss_pred eEEEeecCCCCchhHHhHhh
Q 004481 533 KLLLVGCSGSGTSTIFKQAK 552 (750)
Q Consensus 533 KLLLLGaGESGKSTILKQMK 552 (750)
|+.|+|..++||||++..|.
T Consensus 3 ~i~~iG~~~~GKstl~~~l~ 22 (158)
T PRK15467 3 RIAFVGAVGAGKTTLFNALQ 22 (158)
T ss_pred EEEEECCCCCCHHHHHHHHc
Confidence 79999999999999999853
No 480
>cd04171 SelB SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo
Probab=76.77 E-value=1.6 Score=40.08 Aligned_cols=19 Identities=21% Similarity=0.300 Sum_probs=17.4
Q ss_pred EEEeecCCCCchhHHhHhh
Q 004481 534 LLLVGCSGSGTSTIFKQAK 552 (750)
Q Consensus 534 LLLLGaGESGKSTILKQMK 552 (750)
+.++|..++||||+++.+.
T Consensus 3 i~i~G~~~~GKssl~~~l~ 21 (164)
T cd04171 3 IGTAGHIDHGKTTLIKALT 21 (164)
T ss_pred EEEEecCCCCHHHHHHHHh
Confidence 6789999999999999975
No 481
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=76.66 E-value=1.5 Score=50.12 Aligned_cols=25 Identities=28% Similarity=0.266 Sum_probs=20.5
Q ss_pred ceeeEEEeecCCCCchhHHhHhhhh
Q 004481 530 TLQKLLLVGCSGSGTSTIFKQAKIL 554 (750)
Q Consensus 530 r~iKLLLLGaGESGKSTILKQMKIL 554 (750)
.--.+.|+|..||||||++|-+-=+
T Consensus 26 ~Ge~~~liG~NGsGKSTLl~~l~Gl 50 (530)
T PRK15064 26 GGNRYGLIGANGCGKSTFMKILGGD 50 (530)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3456899999999999999987533
No 482
>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily. IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.
Probab=76.65 E-value=1.8 Score=40.26 Aligned_cols=20 Identities=15% Similarity=0.431 Sum_probs=18.2
Q ss_pred eEEEeecCCCCchhHHhHhh
Q 004481 533 KLLLVGCSGSGTSTIFKQAK 552 (750)
Q Consensus 533 KLLLLGaGESGKSTILKQMK 552 (750)
.|+++|..++||||++..+.
T Consensus 2 ~i~iiG~~~~GKtsli~~l~ 21 (168)
T cd01887 2 VVTVMGHVDHGKTTLLDKIR 21 (168)
T ss_pred EEEEEecCCCCHHHHHHHHH
Confidence 48999999999999999875
No 483
>PRK14266 phosphate ABC transporter ATP-binding protein; Provisional
Probab=76.46 E-value=1.5 Score=44.76 Aligned_cols=22 Identities=32% Similarity=0.428 Sum_probs=19.0
Q ss_pred eeeEEEeecCCCCchhHHhHhh
Q 004481 531 LQKLLLVGCSGSGTSTIFKQAK 552 (750)
Q Consensus 531 ~iKLLLLGaGESGKSTILKQMK 552 (750)
--.+.|+|..||||||++|-+-
T Consensus 29 Ge~~~i~G~nGsGKSTLl~~l~ 50 (250)
T PRK14266 29 NSVTALIGPSGCGKSTFIRTLN 50 (250)
T ss_pred CCEEEEECCCCCCHHHHHHHHH
Confidence 4468999999999999999874
No 484
>cd01873 RhoBTB RhoBTB subfamily. Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.
Probab=76.40 E-value=1.7 Score=43.51 Aligned_cols=20 Identities=20% Similarity=0.303 Sum_probs=18.4
Q ss_pred eeeEEEeecCCCCchhHHhH
Q 004481 531 LQKLLLVGCSGSGTSTIFKQ 550 (750)
Q Consensus 531 ~iKLLLLGaGESGKSTILKQ 550 (750)
.+||++||.+++|||+|+.|
T Consensus 2 ~~Kiv~vG~~~vGKTsLi~~ 21 (195)
T cd01873 2 TIKCVVVGDNAVGKTRLICA 21 (195)
T ss_pred ceEEEEECCCCcCHHHHHHH
Confidence 47999999999999999976
No 485
>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional
Probab=76.36 E-value=1.6 Score=44.71 Aligned_cols=25 Identities=28% Similarity=0.421 Sum_probs=20.2
Q ss_pred eeeEEEeecCCCCchhHHhHhhhhh
Q 004481 531 LQKLLLVGCSGSGTSTIFKQAKILY 555 (750)
Q Consensus 531 ~iKLLLLGaGESGKSTILKQMKILh 555 (750)
--.+.|+|..||||||++|-+-=++
T Consensus 30 G~~~~i~G~nGsGKSTLl~~l~Gl~ 54 (251)
T PRK14249 30 RQITAIIGPSGCGKSTLLRALNRMN 54 (251)
T ss_pred CCEEEEECCCCCCHHHHHHHHhccc
Confidence 4458999999999999999764443
No 486
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=76.36 E-value=1.8 Score=44.20 Aligned_cols=20 Identities=35% Similarity=0.451 Sum_probs=17.8
Q ss_pred EEEeecCCCCchhHHhHhhh
Q 004481 534 LLLVGCSGSGTSTIFKQAKI 553 (750)
Q Consensus 534 LLLLGaGESGKSTILKQMKI 553 (750)
++|.|+.+|||||++|++-.
T Consensus 32 ~~l~G~n~~GKstll~~i~~ 51 (204)
T cd03282 32 HIITGPNMSGKSTYLKQIAL 51 (204)
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 78999999999999998653
No 487
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=76.32 E-value=1.5 Score=49.76 Aligned_cols=26 Identities=31% Similarity=0.427 Sum_probs=21.0
Q ss_pred ceeeEEEeecCCCCchhHHhHhhhhh
Q 004481 530 TLQKLLLVGCSGSGTSTIFKQAKILY 555 (750)
Q Consensus 530 r~iKLLLLGaGESGKSTILKQMKILh 555 (750)
.--.+.|+|..||||||++|-+-=++
T Consensus 30 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 55 (506)
T PRK13549 30 AGEIVSLCGENGAGKSTLMKVLSGVY 55 (506)
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCCC
Confidence 34468999999999999999875444
No 488
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=76.29 E-value=1.5 Score=46.18 Aligned_cols=23 Identities=39% Similarity=0.449 Sum_probs=19.2
Q ss_pred eEEEeecCCCCchhHHhHhhhhh
Q 004481 533 KLLLVGCSGSGTSTIFKQAKILY 555 (750)
Q Consensus 533 KLLLLGaGESGKSTILKQMKILh 555 (750)
.+.|+|+.||||||++|-+-=++
T Consensus 35 ~~~i~G~nGaGKSTLl~~i~G~~ 57 (279)
T PRK13635 35 WVAIVGHNGSGKSTLAKLLNGLL 57 (279)
T ss_pred EEEEECCCCCcHHHHHHHHhcCC
Confidence 48999999999999999765443
No 489
>TIGR01618 phage_P_loop phage nucleotide-binding protein. This model represents an uncharacterized family of proteins from a number of phage of Gram-positive bacteria. This protein contains a P-loop motif, G/A-X-X-G-X-G-K-T near its amino end. The function of this protein is unknown.
Probab=76.29 E-value=1.6 Score=45.64 Aligned_cols=23 Identities=22% Similarity=0.352 Sum_probs=20.2
Q ss_pred ceeeEEEeecCCCCchhHHhHhh
Q 004481 530 TLQKLLLVGCSGSGTSTIFKQAK 552 (750)
Q Consensus 530 r~iKLLLLGaGESGKSTILKQMK 552 (750)
...++|+.|.+|+||||+.|++-
T Consensus 11 ~~~~~liyG~~G~GKtt~a~~~~ 33 (220)
T TIGR01618 11 IPNMYLIYGKPGTGKTSTIKYLP 33 (220)
T ss_pred CCcEEEEECCCCCCHHHHHHhcC
Confidence 35679999999999999999874
No 490
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=76.25 E-value=1.5 Score=48.60 Aligned_cols=20 Identities=30% Similarity=0.595 Sum_probs=17.7
Q ss_pred eeEEEeecCCCCchhHHhHh
Q 004481 532 QKLLLVGCSGSGTSTIFKQA 551 (750)
Q Consensus 532 iKLLLLGaGESGKSTILKQM 551 (750)
=-+|+.|+.||||||+++-|
T Consensus 135 glilI~GpTGSGKTTtL~aL 154 (358)
T TIGR02524 135 GIVFITGATGSGKSTLLAAI 154 (358)
T ss_pred CEEEEECCCCCCHHHHHHHH
Confidence 35889999999999999875
No 491
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=76.22 E-value=1.5 Score=50.41 Aligned_cols=28 Identities=25% Similarity=0.361 Sum_probs=22.9
Q ss_pred hcceeeEEEeecCCCCchhHHhHhhhhh
Q 004481 528 RRTLQKLLLVGCSGSGTSTIFKQAKILY 555 (750)
Q Consensus 528 ~kr~iKLLLLGaGESGKSTILKQMKILh 555 (750)
-++--|+.++|+.||||||++|-+-=+|
T Consensus 373 i~~G~~vaIvG~SGsGKSTL~~lL~g~~ 400 (588)
T PRK11174 373 LPAGQRIALVGPSGAGKTSLLNALLGFL 400 (588)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3456789999999999999999865454
No 492
>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=76.11 E-value=1.6 Score=46.50 Aligned_cols=26 Identities=19% Similarity=0.257 Sum_probs=21.0
Q ss_pred ceeeEEEeecCCCCchhHHhHhhhhh
Q 004481 530 TLQKLLLVGCSGSGTSTIFKQAKILY 555 (750)
Q Consensus 530 r~iKLLLLGaGESGKSTILKQMKILh 555 (750)
.--.+.|+|..||||||++|-|-=++
T Consensus 62 ~Ge~~~liG~NGsGKSTLl~~I~Gl~ 87 (282)
T cd03291 62 KGEMLAITGSTGSGKTSLLMLILGEL 87 (282)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 34568899999999999999766444
No 493
>PRK14730 coaE dephospho-CoA kinase; Provisional
Probab=76.00 E-value=1.9 Score=43.42 Aligned_cols=25 Identities=24% Similarity=0.165 Sum_probs=21.5
Q ss_pred eeEEEeecCCCCchhHHhHhhhhhc
Q 004481 532 QKLLLVGCSGSGTSTIFKQAKILYK 556 (750)
Q Consensus 532 iKLLLLGaGESGKSTILKQMKILh~ 556 (750)
.+|.|.|..+|||||+.+.++-.++
T Consensus 2 ~~i~itG~~gsGKst~~~~l~~~~g 26 (195)
T PRK14730 2 RRIGLTGGIASGKSTVGNYLAQQKG 26 (195)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhhC
Confidence 3689999999999999999887654
No 494
>PRK13633 cobalt transporter ATP-binding subunit; Provisional
Probab=75.99 E-value=1.6 Score=45.93 Aligned_cols=24 Identities=42% Similarity=0.607 Sum_probs=19.6
Q ss_pred eeEEEeecCCCCchhHHhHhhhhh
Q 004481 532 QKLLLVGCSGSGTSTIFKQAKILY 555 (750)
Q Consensus 532 iKLLLLGaGESGKSTILKQMKILh 555 (750)
-.+.|+|..||||||++|-+-=++
T Consensus 37 e~~~l~G~nGsGKSTLl~~l~Gl~ 60 (280)
T PRK13633 37 EFLVILGRNGSGKSTIAKHMNALL 60 (280)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 348899999999999999765443
No 495
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=75.98 E-value=2.8 Score=46.78 Aligned_cols=36 Identities=28% Similarity=0.494 Sum_probs=27.8
Q ss_pred EEEeecCCCCchhHHhHhhhhhcC------------CCCCHHHHhhhh
Q 004481 534 LLLVGCSGSGTSTIFKQAKILYKA------------VPFSDDEHENIK 569 (750)
Q Consensus 534 LLLLGaGESGKSTILKQMKILh~~------------~GFSeeER~~~K 569 (750)
+.++|-+||||||+++-+.-|..| ...+..++..+|
T Consensus 57 fViMGLSGSGKSTLvR~~NrLiept~G~ilv~g~di~~~~~~~Lr~~R 104 (386)
T COG4175 57 FVIMGLSGSGKSTLVRLLNRLIEPTRGEILVDGKDIAKLSAAELRELR 104 (386)
T ss_pred EEEEecCCCCHHHHHHHHhccCCCCCceEEECCcchhcCCHHHHHHHH
Confidence 567899999999999998766554 236777877765
No 496
>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed
Probab=75.97 E-value=1.5 Score=49.43 Aligned_cols=25 Identities=24% Similarity=0.305 Sum_probs=20.3
Q ss_pred eeeEEEeecCCCCchhHHhHhhhhh
Q 004481 531 LQKLLLVGCSGSGTSTIFKQAKILY 555 (750)
Q Consensus 531 ~iKLLLLGaGESGKSTILKQMKILh 555 (750)
--.+.|+|+.||||||++|-|-=+.
T Consensus 29 Geiv~liGpNGaGKSTLLk~LaGll 53 (402)
T PRK09536 29 GSLVGLVGPNGAGKTTLLRAINGTL 53 (402)
T ss_pred CCEEEEECCCCchHHHHHHHHhcCC
Confidence 3457899999999999999876443
No 497
>PRK03731 aroL shikimate kinase II; Reviewed
Probab=75.91 E-value=1.8 Score=41.62 Aligned_cols=24 Identities=29% Similarity=0.384 Sum_probs=19.9
Q ss_pred eEEEeecCCCCchhHHhHhhhhhc
Q 004481 533 KLLLVGCSGSGTSTIFKQAKILYK 556 (750)
Q Consensus 533 KLLLLGaGESGKSTILKQMKILh~ 556 (750)
+|+|.|..||||||+.|.+.-.++
T Consensus 4 ~i~~~G~~GsGKst~~~~la~~lg 27 (171)
T PRK03731 4 PLFLVGARGCGKTTVGMALAQALG 27 (171)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhC
Confidence 588999999999999998764433
No 498
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=75.82 E-value=1.7 Score=45.56 Aligned_cols=23 Identities=35% Similarity=0.418 Sum_probs=18.5
Q ss_pred EEEeecCCCCchhHHhHhhhhhc
Q 004481 534 LLLVGCSGSGTSTIFKQAKILYK 556 (750)
Q Consensus 534 LLLLGaGESGKSTILKQMKILh~ 556 (750)
+.|.|++|+||||++|-+-....
T Consensus 31 ~fl~GpSGAGKSTllkLi~~~e~ 53 (223)
T COG2884 31 VFLTGPSGAGKSTLLKLIYGEER 53 (223)
T ss_pred EEEECCCCCCHHHHHHHHHhhhc
Confidence 67899999999999987554443
No 499
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=75.79 E-value=1.6 Score=49.54 Aligned_cols=25 Identities=36% Similarity=0.518 Sum_probs=20.4
Q ss_pred eeeEEEeecCCCCchhHHhHhhhhh
Q 004481 531 LQKLLLVGCSGSGTSTIFKQAKILY 555 (750)
Q Consensus 531 ~iKLLLLGaGESGKSTILKQMKILh 555 (750)
--.+.|+|+.||||||++|-+-=+.
T Consensus 30 Ge~~~l~G~NGsGKSTLl~~l~G~~ 54 (501)
T PRK10762 30 GRVMALVGENGAGKSTMMKVLTGIY 54 (501)
T ss_pred CeEEEEECCCCCCHHHHHHHHhCCC
Confidence 3468899999999999999875443
No 500
>PF00406 ADK: Adenylate kinase; InterPro: IPR000850 Adenylate kinases (ADK) are phosphotransferases that catalyse the reversible reaction AMP + MgATP = ADP + MgADP an essential reaction for many processes in living cells. Two ADK isozymes have been identified in mammalian cells. These specifically bind AMP and favour binding to ATP over other nucleotide triphosphates (AK1 is cytosolic and AK2 is located in the mitochondria). A third ADK has been identified in bovine heart and human cells [], this is a mitochondrial GTP:AMP phosphotransferase, also specific for the phosphorylation of AMP, but can only use GTP or ITP as a substrate []. ADK has also been identified in different bacterial species and in yeast []. Two further enzymes are known to be related to the ADK family, i.e. yeast uridine monophosphokinase and slime mold UMP-CMP kinase. Within the ADK family there are several conserved regions, including the ATP-binding domains. One of the most conserved areas includes an Arg residue, whose modification inactivates the enzyme, together with an Asp that resides in the catalytic cleft of the enzyme and participates in a salt bridge.; GO: 0005524 ATP binding, 0019205 nucleobase-containing compound kinase activity, 0006139 nucleobase-containing compound metabolic process; PDB: 1ZD8_A 3TLX_D 1TEV_A 1ZAK_B 3CM0_A 3ADK_A 1ZIP_A 1ZIO_A 1ZIN_A 3NDP_A ....
Probab=75.77 E-value=1.6 Score=41.43 Aligned_cols=21 Identities=33% Similarity=0.449 Sum_probs=16.6
Q ss_pred EeecCCCCchhHHhHhhhhhc
Q 004481 536 LVGCSGSGTSTIFKQAKILYK 556 (750)
Q Consensus 536 LLGaGESGKSTILKQMKILh~ 556 (750)
|+|+.+|||+|+.+++---|+
T Consensus 1 i~G~PgsGK~t~~~~la~~~~ 21 (151)
T PF00406_consen 1 ILGPPGSGKGTQAKRLAKRYG 21 (151)
T ss_dssp EEESTTSSHHHHHHHHHHHHT
T ss_pred CcCCCCCChHHHHHHHHHhcC
Confidence 689999999999887544343
Done!