Query 004481
Match_columns 750
No_of_seqs 227 out of 1032
Neff 4.0
Searched_HMMs 29240
Date Tue Mar 26 18:16:42 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/004481.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_1788-1792//hhsearch_pdb/004481hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1azs_C GS-alpha; complex (lyas 1.0 1 1 354.4 11.6 216 493-746 1-233 (402)
2 1cip_A Protein (guanine nucleo 1.0 1 1 346.4 11.6 201 508-746 8-209 (353)
3 3ohm_A Guanine nucleotide-bind 1.0 1 1 335.2 10.8 181 526-745 2-182 (327)
4 1zcb_A G alpha I/13; GTP-bindi 1.0 1 1 330.0 9.6 210 493-746 1-217 (362)
5 4fid_A G protein alpha subunit 1.0 1 1 318.5 12.8 173 528-743 2-174 (340)
6 2xtz_A Guanine nucleotide-bind 1.0 1 1 306.9 14.2 190 528-747 6-200 (354)
7 2hf9_A Probable hydrogenase ni 1.0 1 1 31.8 1.4 27 526-552 33-59 (226)
8 3c5c_A RAS-like protein 12; GD 1.0 1 1 31.4 2.5 32 521-552 11-42 (187)
9 2o52_A RAS-related protein RAB 1.0 1 1 31.4 2.5 28 525-552 19-46 (200)
10 1oix_A RAS-related protein RAB 1.0 1 1 31.1 2.2 26 529-554 27-52 (191)
No 1
>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*
Probab=1.00 E-value=1 Score=354.40 Aligned_cols=216 Identities=24% Similarity=0.380 Sum_probs=180.5
Q ss_pred EEECCCCCCCCCC-CCCCCCCCCCCCCCCCCH-HHHHHCCEEEEEEEECCCCCCHHHHHHHHHHHCCCCCCHH-------
Q ss_conf 4202323458999-999854445400125642-4887203001897205889840587675654048999988-------
Q 004481 493 LVCAVLSLPVPSK-SSNPGAEQGSGLMSRSVP-DYIERRTLQKLLLVGCSGSGTSTIFKQAKILYKAVPFSDD------- 563 (750)
Q Consensus 493 m~Ca~~SlP~p~~-~~~~~ak~iSd~IDrsLq-dk~~~k~~iKLLLLGaGESGKSTILKQMKILh~p~GFSee------- 563 (750)
|||.. |.+..+. ....+++++|++||++|+ ++++.++++||||||+||||||||+|||||||+ +||+.+
T Consensus 1 mg~~~-s~~~~~~~~~~~~~~~~~~~Id~~l~~~~~~~~~~~klLLLG~geSGKSTi~KQmkiih~-~gfs~~E~~~~~~ 78 (402)
T 1azs_C 1 MGCLG-NSKTEDQRNEEKAQREANKKIEKQLQKDKQVYRATHRLLLLGAGESGKSTIVKQMRILHV-NGFNGEGGEEDPQ 78 (402)
T ss_dssp ------------------------------------CCTTEEEEEEEESTTSSHHHHHHHHHHHHC-CC-----------
T ss_pred CCCCC-CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHHHC-CCCCHHHHHHHHH
T ss_conf 98877-786555542458999988999999999898741345288864898733459999999827-9999678665688
Q ss_pred --------HHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEECCCHHHHHHHHHH
Q ss_conf --------875546788887999999999611000256877542027999989999998867762111341468867999
Q 004481 564 --------EHENIKLKIQSNAYGYLGILLEGRERFEEEILGEKRKKQSSDETNPVGSSDSTDGKTIYTIGPRLKAFSDWL 635 (750)
Q Consensus 564 --------ER~~~K~IIqsNIi~sL~iLLea~E~leie~l~e~~~l~spde~s~~gns~~~ndr~IySi~~~lkafsdwl 635 (750)
|+..|+.+|+.|++.+|..|+++|+.+...+ ..+ ++.++..++++
T Consensus 79 ~~~~~~~~e~~~~~~~i~~Ni~~~~~~i~~a~~~l~~~i--------------~~~-------------~~~~~~~~~~~ 131 (402)
T 1azs_C 79 AARSNSDGEKATKVQDIKNNLKEAIETIVAAMSNLVPPV--------------ELA-------------NPENQFRVDYI 131 (402)
T ss_dssp --------CTTHHHHHHHHHHHHHHHHHHHHHHHSSSCC--------------CCS-------------SGGGHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC--------------CCC-------------CCHHHHHHHHH
T ss_conf 876300688999999999989999999999998617875--------------557-------------70017999999
Q ss_pred HHHHHCCCCCCCCCCCCHHHHHHHHHHHCCHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEECCCC
Q ss_conf 85530599555687561447999999713677999995010023310237566521021248887779324333103567
Q 004481 636 LKTMVSGNLEAIFPAATREYSPLVEELWKDAAIQATYSRRSELEMLSSVASYFLERVVDISRTDYEPSDLDILYAEGVTS 715 (750)
Q Consensus 636 Le~~~~Gdld~~fp~~t~EiAeaI~eLWkDpgIQa~f~RRnEFqlLpDSA~YFLDnIdRIaqpDYiPTDeDILraRvkTt 715 (750)
+..+...+ .. ++++++++|..||+|++||+||.|++||+ |+|+|.|||++++||+.++|.||++|||++|++|+
T Consensus 132 ~~~~~~~~--~~---~~~~~~~~i~~lW~d~~iq~~~~r~~e~~-l~d~~~yfl~~~~ri~~~~Y~PT~~Dil~~r~~Ti 205 (402)
T 1azs_C 132 LSVMNVPD--FD---FPPEFYEHAKALWEDEGVRACYERSNEYQ-LIDCAQYFLDKIDVIKQDDYVPSDQDLLRCRVLTS 205 (402)
T ss_dssp HHTTTCSS--CC---CCHHHHHHHHHHHHCHHHHHHHTTGGGSC-CCTTHHHHHTTHHHHTCTTCCCCHHHHHHCCCCCC
T ss_pred HHHCCCCC--CC---CCHHHHHHHHHHHCCHHHHHHHHHCCCCE-ECCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEE
T ss_conf 86202577--77---89999999999976988999998443424-22212217888988504666885100001445155
Q ss_pred CCCEEEEEEECCCCCCCCCCCCCCCCCCCCC
Q ss_conf 8990799988499997886479997775445
Q 004481 716 SNGLACVDFSFPRSASDDSVDTADQHDSLLR 746 (750)
Q Consensus 716 snGIvE~eFsi~~~s~~~~~d~~~~~~~~~~ 746 (750)
|+.+..|.++. -....+|++||...+.+
T Consensus 206 --Gi~~~~~~~~~-v~l~iwDtaGQe~~r~~ 233 (402)
T 1azs_C 206 --GIFETKFQVDK-VNFHMFDVGGQRDERRK 233 (402)
T ss_dssp --SEEEEEEEETT-EEEEEEEECCSGGGGGG
T ss_pred --EEEEEEEECCC-CCCEECCCCHHHHHHHH
T ss_conf --34889742077-43312015111666541
No 2
>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...
Probab=1.00 E-value=1 Score=346.43 Aligned_cols=201 Identities=26% Similarity=0.396 Sum_probs=171.1
Q ss_pred CCCCCCCCCCCCCCCH-HHHHHCCEEEEEEEECCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9854445400125642-488720300189720588984058767565404899998887554678888799999999961
Q 004481 508 NPGAEQGSGLMSRSVP-DYIERRTLQKLLLVGCSGSGTSTIFKQAKILYKAVPFSDDEHENIKLKIQSNAYGYLGILLEG 586 (750)
Q Consensus 508 ~~~ak~iSd~IDrsLq-dk~~~k~~iKLLLLGaGESGKSTILKQMKILh~p~GFSeeER~~~K~IIqsNIi~sL~iLLea 586 (750)
..+++++|++||++|+ ++++.++++||||||+||||||||+|||||||+ +||+++|+..|+.+||.|++++|+.||++
T Consensus 8 ~~~~~~~s~~id~~l~~~~~~~~~~~klLlLG~geSGKST~~KQmkii~~-~g~~~~e~~~~~~~i~~N~~~~~~~l~~~ 86 (353)
T 1cip_A 8 DKAAVERSKMIDRNLREDGEKAAREVKLLLLGAGESGKSTIVKQMKIIHE-AGYSEEECKQYKAVVYSNTIQSIIAIIRA 86 (353)
T ss_dssp -----------------------CEEEEEEECSTTSSHHHHHHHHHHHHS-CCCCHHHHHHTHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHC-CCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999989999999998498612664399976898871459999988607-99998999999999999999999999999
Q ss_pred HCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEECCCHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHCCH
Q ss_conf 10002568775420279999899999988677621113414688679998553059955568756144799999971367
Q 004481 587 RERFEEEILGEKRKKQSSDETNPVGSSDSTDGKTIYTIGPRLKAFSDWLLKTMVSGNLEAIFPAATREYSPLVEELWKDA 666 (750)
Q Consensus 587 ~E~leie~l~e~~~l~spde~s~~gns~~~ndr~IySi~~~lkafsdwlLe~~~~Gdld~~fp~~t~EiAeaI~eLWkDp 666 (750)
|+.+++++ +++ .++..++++++.....+ +. .++++++++|..||+|+
T Consensus 87 ~~~~~i~~----------------~~~-------------~~~~~~~~~~~~~~~~~-~~---~~~~~~~~~i~~lw~d~ 133 (353)
T 1cip_A 87 MGRLKIDF----------------GDA-------------ARADDARQLFVLAGAAE-EG---FMTAELAGVIKRLWKDS 133 (353)
T ss_dssp HHHHTCCC----------------SST-------------THHHHHHHHHHHHHHHT-TT---CCCHHHHHHHHHHHHCH
T ss_pred HHHHCCCC----------------CCC-------------CHHHHHHHHHHHCCCCC-CC---CCCHHHHHHHHHHHCCH
T ss_conf 99819887----------------880-------------00899999986225555-56---68999999999997798
Q ss_pred HHHHHHHHCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEECCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCC
Q ss_conf 79999950100233102375665210212488877793243331035678990799988499997886479997775445
Q 004481 667 AIQATYSRRSELEMLSSVASYFLERVVDISRTDYEPSDLDILYAEGVTSSNGLACVDFSFPRSASDDSVDTADQHDSLLR 746 (750)
Q Consensus 667 gIQa~f~RRnEFqlLpDSA~YFLDnIdRIaqpDYiPTDeDILraRvkTtsnGIvE~eFsi~~~s~~~~~d~~~~~~~~~~ 746 (750)
+||+||.|++||+ |+|+|.|||++++||+.++|+||++|||++|.+|+ |+.+..|.++. -....+|++||...+.+
T Consensus 134 ~iq~~~~~~~e~~-l~dsa~yfl~~~~ri~~~~Y~PT~~Dil~~~~~T~--Gi~~~~~~~~~-~~l~iwDt~GQe~~r~~ 209 (353)
T 1cip_A 134 GVQACFNRSREYQ-LNDSAAYYLNDLDRIAQPNYIPTQQDVLRTRVKTT--GIVETHFTFKD-LHFKMFDVGGQRSERKK 209 (353)
T ss_dssp HHHHHHTTGGGSC-CCTTHHHHHTTHHHHTSTTCCCCHHHHHTCCCCCC--SEEEEEEEETT-EEEEEEEECCSGGGGGG
T ss_pred HHHHHHHHHHHCC-CCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEE--CEEEEEEEECC-EEEEEEECCCCHHHHHH
T ss_conf 8999998610202-57647899999999835788887542201567331--34889985287-15898757886435477
No 3
>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A*
Probab=1.00 E-value=1 Score=335.24 Aligned_cols=181 Identities=24% Similarity=0.376 Sum_probs=155.9
Q ss_pred HHHCCEEEEEEEECCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCC
Q ss_conf 87203001897205889840587675654048999988875546788887999999999611000256877542027999
Q 004481 526 IERRTLQKLLLVGCSGSGTSTIFKQAKILYKAVPFSDDEHENIKLKIQSNAYGYLGILLEGRERFEEEILGEKRKKQSSD 605 (750)
Q Consensus 526 ~~~k~~iKLLLLGaGESGKSTILKQMKILh~p~GFSeeER~~~K~IIqsNIi~sL~iLLea~E~leie~l~e~~~l~spd 605 (750)
++.++++||||||+||||||||+|||||||+ +||+++|+..||.+||.|++++|+.||++|+.+++++
T Consensus 2 ~~~~~~~klLlLG~geSGKSTi~KQmkiih~-~gfs~~e~~~~~~~i~~N~~~~~~~li~a~~~l~i~~----------- 69 (327)
T 3ohm_A 2 ADARRELKLLLLGTGESGKSTFIKQMRIIHG-SGYSDEDKRGFTKLVYQNIFTAMQAMIRAMDTLKIPY----------- 69 (327)
T ss_dssp ---CCEEEEEEECSTTSSHHHHHHHHHHHHS-CCCCHHHHHTTHHHHHHHHHHHHHHHHHHHHHTTCCC-----------
T ss_pred CHHCCCCEEEEECCCCCCHHHHHHHHHHHHC-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC-----------
T ss_conf 0011554089976898547899999999973-9989999999999999729999999999898539897-----------
Q ss_pred CCCCCCCCCCCCCCCEECCCHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHCCHHHHHHHHHCCHHHHHHHHH
Q ss_conf 98999999886776211134146886799985530599555687561447999999713677999995010023310237
Q 004481 606 ETNPVGSSDSTDGKTIYTIGPRLKAFSDWLLKTMVSGNLEAIFPAATREYSPLVEELWKDAAIQATYSRRSELEMLSSVA 685 (750)
Q Consensus 606 e~s~~gns~~~ndr~IySi~~~lkafsdwlLe~~~~Gdld~~fp~~t~EiAeaI~eLWkDpgIQa~f~RRnEFqlLpDSA 685 (750)
++ +.++.+++++++..... . ..++++++++|..||+|++||+||+|++||| |+|+|
T Consensus 70 -----~~-------------~~~~~~~~~~~~~~~~~--~---~~~~~e~~~~i~~lW~d~~iq~~~~r~~e~~-l~d~~ 125 (327)
T 3ohm_A 70 -----KY-------------EHNKAHAQLVREVDVEK--V---SAFENPYVDAIKSLWNDPGIQECYDRRREYQ-LSDST 125 (327)
T ss_dssp -----SS-------------THHHHHHHHHHTCCGGG--C---CCCCTTHHHHHHHHHTCHHHHHHHHGGGGSC-CCTTH
T ss_pred -----CC-------------CHHHHHHHHHHCCCCCC--C---CCCCHHHHHHHHHHHCCHHHHHHHHCCCCCE-ECCCH
T ss_conf -----88-------------11599999996516555--5---4341999999999975988999997033203-14328
Q ss_pred HHHHHHCCCCCCCCCCCCCCCEEEEECCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCC
Q ss_conf 566521021248887779324333103567899079998849999788647999777544
Q 004481 686 SYFLERVVDISRTDYEPSDLDILYAEGVTSSNGLACVDFSFPRSASDDSVDTADQHDSLL 745 (750)
Q Consensus 686 ~YFLDnIdRIaqpDYiPTDeDILraRvkTtsnGIvE~eFsi~~~s~~~~~d~~~~~~~~~ 745 (750)
.|||++++||++++|.||++|||++|++|+ |+.++.|.++. -.....|++||...+.
T Consensus 126 ~yfl~~l~Ri~~~~Y~PT~~Dilr~r~~Ti--Gi~~~~~~~~~-v~l~iwDtgGQe~~R~ 182 (327)
T 3ohm_A 126 KYYLNDLDRVADPSYLPTQQDVLRVRVPTT--GIIEYPFDLQS-VIFRMVDVGGQRSERR 182 (327)
T ss_dssp HHHHTTHHHHHSTTCCCCHHHHTTCCCCCC--SEEEEEEEETT-EEEEEEEECCSHHHHT
T ss_pred HHHHHHHHHHHCCCCCCCCCCHHCCCCCEE--EEEEEEEEEEC-EEEEEEECCCCHHHHH
T ss_conf 899987887852577865120340468545--27999987401-1047887687453789
No 4
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=1.00 E-value=1 Score=329.98 Aligned_cols=210 Identities=30% Similarity=0.470 Sum_probs=173.3
Q ss_pred EEECCCCCCCCCCCCCCCCCCCCCCCCCCCH-HHHHHCCEEEEEEEECCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q ss_conf 4202323458999999854445400125642-488720300189720588984058767565404899998887554678
Q 004481 493 LVCAVLSLPVPSKSSNPGAEQGSGLMSRSVP-DYIERRTLQKLLLVGCSGSGTSTIFKQAKILYKAVPFSDDEHENIKLK 571 (750)
Q Consensus 493 m~Ca~~SlP~p~~~~~~~ak~iSd~IDrsLq-dk~~~k~~iKLLLLGaGESGKSTILKQMKILh~p~GFSeeER~~~K~I 571 (750)
|||.. |. ...+++++|++||++|+ ++++.++.+||||||+|||||||++|||||+|. .||+++|+..|+.+
T Consensus 1 mgc~~-~~------~~~~~~~~s~~Id~~l~~~~~~~~~~~killlG~~~SGKST~~kq~~i~~~-~~~~~~e~~~~~~~ 72 (362)
T 1zcb_A 1 MGCTL-SA------EDKAAVERSKMIDRNLREDGERSARLVKILLLGAGESGKSTFLKQMRIIHG-QDFDQRAREEFRPT 72 (362)
T ss_dssp -------------------------------------CCCEEEEEECSTTSSHHHHHHHHHHHHS-CCCCHHHHHTTHHH
T ss_pred CCCCC-CH------HHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHC-CCCCCCCHHHHHHH
T ss_conf 99988-88------999999988999999998498732762799988999868899999999717-99984529999999
Q ss_pred HHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEECCCHHHHHHHHHHHHHH------HCCCCC
Q ss_conf 88879999999996110002568775420279999899999988677621113414688679998553------059955
Q 004481 572 IQSNAYGYLGILLEGRERFEEEILGEKRKKQSSDETNPVGSSDSTDGKTIYTIGPRLKAFSDWLLKTM------VSGNLE 645 (750)
Q Consensus 572 IqsNIi~sL~iLLea~E~leie~l~e~~~l~spde~s~~gns~~~ndr~IySi~~~lkafsdwlLe~~------~~Gdld 645 (750)
|+.|++++|+.||++|+.+++++ +++ .++...++++... +.|..+
T Consensus 73 i~~n~~~s~~~il~a~~~~~i~~----------------~~~-------------~~~~~~~~~~~~~~~~~~~~~g~~~ 123 (362)
T 1zcb_A 73 IYSNVIKGMRVLVDAREKLHIPW----------------GDN-------------KNQLHGDKLMAFDTRAPMAAQGMVE 123 (362)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCCC----------------SSG-------------GGHHHHHHHHTSCSSSHHHHTTCCC
T ss_pred HHHHHHHHHHHHHHHHHHCCCCC----------------CCC-------------CCHHHHHHHHHHCCCCCCCCCCCCC
T ss_conf 99999999999999999819987----------------882-------------2089999998401100000136676
Q ss_pred CCCCCCCHHHHHHHHHHHCCHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEECCCCCCCEEEEEEE
Q ss_conf 56875614479999997136779999950100233102375665210212488877793243331035678990799988
Q 004481 646 AIFPAATREYSPLVEELWKDAAIQATYSRRSELEMLSSVASYFLERVVDISRTDYEPSDLDILYAEGVTSSNGLACVDFS 725 (750)
Q Consensus 646 ~~fp~~t~EiAeaI~eLWkDpgIQa~f~RRnEFqlLpDSA~YFLDnIdRIaqpDYiPTDeDILraRvkTtsnGIvE~eFs 725 (750)
. ..+ ++++++|..||+|++||+||+|++||| |+|+|.|||++++||++++|+||++|||++|++|+ |+.+..|.
T Consensus 124 ~--~~~-~~~~~~i~~LW~d~~iq~~~~r~~e~~-l~ds~~yfl~~~~ri~~~~Y~PT~~Dil~~r~~T~--Gi~~~~~~ 197 (362)
T 1zcb_A 124 T--RVF-LQYLPAIRALWEDSGIQNAYDRRREFQ-LGESVKYFLDNLDKLGVPDYIPSQQDILLARRPTK--GIHEYDFE 197 (362)
T ss_dssp H--HHH-HHHHHHHHHHHHCHHHHHHHHTGGGSC-CCTTHHHHHTTHHHHTSTTCCCCHHHHHHCCCCCS--SEEEEEEE
T ss_pred C--HHH-HHHHHHHHHHHCCHHHHHHHHHCCHHH-HCCCHHHHHHHHHHHHCCCCCCCHHHHHHCCCCCC--CEEEEEEE
T ss_conf 1--028-999999999978999999998520565-31028778988999826999997266661367731--15889866
Q ss_pred CCCCCCCCCCCCCCCCCCCCC
Q ss_conf 499997886479997775445
Q 004481 726 FPRSASDDSVDTADQHDSLLR 746 (750)
Q Consensus 726 i~~~s~~~~~d~~~~~~~~~~ 746 (750)
++. -....+|++||...+.+
T Consensus 198 ~~~-~~l~i~Dt~Gq~~~r~~ 217 (362)
T 1zcb_A 198 IKN-VPFKMVDVGGQRSERKR 217 (362)
T ss_dssp ETT-EEEEEEEECC-------
T ss_pred ECC-EEEEEEECCCHHHHHHH
T ss_conf 488-67998754410544110
No 5
>4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica}
Probab=1.00 E-value=1 Score=318.50 Aligned_cols=173 Identities=28% Similarity=0.397 Sum_probs=146.8
Q ss_pred HCCEEEEEEEECCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCC
Q ss_conf 20300189720588984058767565404899998887554678888799999999961100025687754202799998
Q 004481 528 RRTLQKLLLVGCSGSGTSTIFKQAKILYKAVPFSDDEHENIKLKIQSNAYGYLGILLEGRERFEEEILGEKRKKQSSDET 607 (750)
Q Consensus 528 ~k~~iKLLLLGaGESGKSTILKQMKILh~p~GFSeeER~~~K~IIqsNIi~sL~iLLea~E~leie~l~e~~~l~spde~ 607 (750)
.++++||||||+||||||||+|||||||+ +||+++|++.||++||.|++.+|+.||++|+.+++++.
T Consensus 2 ~~~~~klLLLG~geSGKSTi~KQmkii~~-~gfs~~e~~~~~~~i~~N~~~~~~~li~~~~~l~i~~~------------ 68 (340)
T 4fid_A 2 NAKPITVMLLGSGESGKSTIAKQLKILFG-GGFPEQERATHKSSICSNVVTCMRTLIEQSAILNHPMK------------ 68 (340)
T ss_dssp --CCEEEEEEECTTSSHHHHHHHHHHHTS-CCCCHHHHHTTHHHHHHHHHHHHHHHHHHHHHTTCCCS------------
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHHC-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC------------
T ss_conf 97763489988999868999999999825-99999999999999997199999999999998298978------------
Q ss_pred CCCCCCCCCCCCCEECCCHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHCCHHHHHHHHHCCHHHHHHHHHHH
Q ss_conf 99999988677621113414688679998553059955568756144799999971367799999501002331023756
Q 004481 608 NPVGSSDSTDGKTIYTIGPRLKAFSDWLLKTMVSGNLEAIFPAATREYSPLVEELWKDAAIQATYSRRSELEMLSSVASY 687 (750)
Q Consensus 608 s~~gns~~~ndr~IySi~~~lkafsdwlLe~~~~Gdld~~fp~~t~EiAeaI~eLWkDpgIQa~f~RRnEFqlLpDSA~Y 687 (750)
++.+. ..+ ++.. ..+ ..++++++++|..||+|++||+||.|++||+ |+|+|.|
T Consensus 69 ----~~~~~------------~~~----~~~~---~~~---~~~~~~~~~~i~~lW~d~~iq~~~~r~~e~~-l~d~~~y 121 (340)
T 4fid_A 69 ----YQPKS------------KEF----TTED---PVT---LPFSPELVGDVEALWADEGIQATYEESAKFQ-LPDCAKY 121 (340)
T ss_dssp ----CCCCS------------GGG----SCCS---CCC---SSCCTTHHHHHHHHHHSHHHHHHHHTCTTSC-CCTTHHH
T ss_pred ----CHHHH------------HHH----HHCC---CCC---CCCCHHHHHHHHHHHCCHHHHHHHHHCCCCC-CCCHHHH
T ss_conf ----71357------------777----5125---677---7789999999999984989999998433102-5611535
Q ss_pred HHHHCCCCCCCCCCCCCCCEEEEECCCCCCCEEEEEEECCCCCCCCCCCCCCCCCC
Q ss_conf 65210212488877793243331035678990799988499997886479997775
Q 004481 688 FLERVVDISRTDYEPSDLDILYAEGVTSSNGLACVDFSFPRSASDDSVDTADQHDS 743 (750)
Q Consensus 688 FLDnIdRIaqpDYiPTDeDILraRvkTtsnGIvE~eFsi~~~s~~~~~d~~~~~~~ 743 (750)
||++++||++++|.||++|||++|++|+ |+.++.|.++. -.....|++||...
T Consensus 122 fl~~l~Ri~~~~Y~PT~~Dil~~~~~Ti--Gi~~~~~~~~~-v~l~iwDtaGQe~~ 174 (340)
T 4fid_A 122 LFENVKRIAMEDYVPTEEDLIHNRTKTT--GIHEYDFVVKD-IPFHLIDVGGQRSE 174 (340)
T ss_dssp HHHTHHHHSSTTCCCCHHHHHHSCCCCC--SCEEEEEESSS-CEEEEEECCSCHHH
T ss_pred HHHHHHHHHCCCCCCCCCCEEECCCCEE--EEEEEEEEEEE-EEECCCCCCCCCCC
T ss_conf 8998998843667863023231256522--16899987401-34203137986122
No 6
>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}
Probab=1.00 E-value=1 Score=306.93 Aligned_cols=190 Identities=29% Similarity=0.491 Sum_probs=157.3
Q ss_pred HCCEEEEEEEECCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCC
Q ss_conf 20300189720588984058767565404899998887554678888799999999961100025687754202799998
Q 004481 528 RRTLQKLLLVGCSGSGTSTIFKQAKILYKAVPFSDDEHENIKLKIQSNAYGYLGILLEGRERFEEEILGEKRKKQSSDET 607 (750)
Q Consensus 528 ~k~~iKLLLLGaGESGKSTILKQMKILh~p~GFSeeER~~~K~IIqsNIi~sL~iLLea~E~leie~l~e~~~l~spde~ 607 (750)
-.+++||||||+||||||||+||||++|. .||+++|+..|+.+|+.|++++|+.||++|+.++++..
T Consensus 6 ~~~~~k~lllG~~~sGKsT~~kq~~~~~~-~g~~~~e~~~~~~~i~~Ni~~~~~~ll~a~~~l~~~~~------------ 72 (354)
T 2xtz_A 6 GIHIRKLLLLGAGESGKSTIFKQIKLLFQ-TGFDEGELKSYVPVIHANVYQTIKLLHDGTKEFAQNET------------ 72 (354)
T ss_dssp CCEEEEEEEECSTTSSHHHHHHHHHHHHS-CCCCHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHCS------------
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC------------
T ss_conf 87713699988999868999999998706-99880039999999999899999999999998077752------------
Q ss_pred CCCCCCCCCCCCCEECCCHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHCCHHHHHHHHHCCHHHHHHHHHHH
Q ss_conf 99999988677621113414688679998553059955568756144799999971367799999501002331023756
Q 004481 608 NPVGSSDSTDGKTIYTIGPRLKAFSDWLLKTMVSGNLEAIFPAATREYSPLVEELWKDAAIQATYSRRSELEMLSSVASY 687 (750)
Q Consensus 608 s~~gns~~~ndr~IySi~~~lkafsdwlLe~~~~Gdld~~fp~~t~EiAeaI~eLWkDpgIQa~f~RRnEFqlLpDSA~Y 687 (750)
+ ...+.+.+.++.+.+++.......+ ++.++++++++|..||+|++||+||.|++||+ |+|+|.|
T Consensus 73 ----~------~~~~~l~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~i~~LW~D~~vq~~~~r~~e~~-l~d~~~y 137 (354)
T 2xtz_A 73 ----D------SAKYMLSSESIAIGEKLSEIGGRLD----YPRLTKDIAEGIETLWKDPAIQETCARGNELQ-VPDCTKY 137 (354)
T ss_dssp ----S------CCTTCCCHHHHHHHHHHHHHHHHCS----SCCCCHHHHHHHHHHTTCHHHHHHHTTGGGTT-CCTTHHH
T ss_pred ----C------CCCCCCCHHHHHHHHHHHHCCCCCC----CCCCCHHHHHHHHHHHCCHHHHHHHHHCCHHH-HHCCHHH
T ss_conf ----1------0002378667999999984024556----66579999999999977989999998500344-3011889
Q ss_pred HHHHCCCCCCCCCCCCCCCEEEEECCCCCCCEEEEEEECCC-----CCCCCCCCCCCCCCCCCCC
Q ss_conf 65210212488877793243331035678990799988499-----9978864799977754455
Q 004481 688 FLERVVDISRTDYEPSDLDILYAEGVTSSNGLACVDFSFPR-----SASDDSVDTADQHDSLLRW 747 (750)
Q Consensus 688 FLDnIdRIaqpDYiPTDeDILraRvkTtsnGIvE~eFsi~~-----~s~~~~~d~~~~~~~~~~y 747 (750)
||++++||+.++|+||++||+++|++|+ ||.|+.|.++. .-.....|++||...+..+
T Consensus 138 fl~~~~ri~~~~Y~PT~~D~~~~r~~T~--Gi~e~~f~~~~~~~~~~v~l~iwDtaGQe~~r~~~ 200 (354)
T 2xtz_A 138 LMENLKRLSDINYIPTKEDVLYARVRTT--GVVEIQFSPVGENKKSGEVYRLFDVGGQRNERRKW 200 (354)
T ss_dssp HHTSHHHHHSTTCCCCHHHHHHCCCCCC--SEEEEEECCCCE------EEEEEEECCSTTGGGGT
T ss_pred HHHHHHHHHCCCCCCCCHHEEEECCCCC--CEEEEEEEECCCCCCCCEEEEEEECCCCHHHHHHH
T ss_conf 9998999834788987411044125536--62368988615766541113789779961013789
No 7
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=1.00 E-value=1 Score=31.85 Aligned_cols=27 Identities=15% Similarity=0.391 Sum_probs=22.6
Q ss_pred HHHCCEEEEEEEECCCCCCHHHHHHHH
Q ss_conf 872030018972058898405876756
Q 004481 526 IERRTLQKLLLVGCSGSGTSTIFKQAK 552 (750)
Q Consensus 526 ~~~k~~iKLLLLGaGESGKSTILKQMK 552 (750)
...++..|++++|.+++||||++.++-
T Consensus 33 ~~~~~~~~i~ivG~~gvGKTtl~~~l~ 59 (226)
T 2hf9_A 33 LNKHGVVAFDFMGAIGSGKTLLIEKLI 59 (226)
T ss_dssp HHHTTCEEEEEEESTTSSHHHHHHHHH
T ss_pred HHHCCCEEEEEECCCCCCHHHHHHHHH
T ss_conf 873797289998599988999999999
No 8
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=1.00 E-value=1 Score=31.41 Aligned_cols=32 Identities=19% Similarity=0.227 Sum_probs=25.0
Q ss_pred CCHHHHHHCCEEEEEEEECCCCCCHHHHHHHH
Q ss_conf 64248872030018972058898405876756
Q 004481 521 SVPDYIERRTLQKLLLVGCSGSGTSTIFKQAK 552 (750)
Q Consensus 521 sLqdk~~~k~~iKLLLLGaGESGKSTILKQMK 552 (750)
..++.......+|++++|..++||||++.++.
T Consensus 11 ~~~~~~~~~~~~ki~vvG~~~vGKTsLi~~l~ 42 (187)
T 3c5c_A 11 RENLYFQGPLEVNLAILGRRGAGKSALTVKFL 42 (187)
T ss_dssp ---------CEEEEEEECCTTSSHHHHHHHHH
T ss_pred HHHHHHCCCCEEEEEEECCCCCCHHHHHHHHH
T ss_conf 56687589965899999979986899999998
No 9
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=1.00 E-value=1 Score=31.38 Aligned_cols=28 Identities=32% Similarity=0.461 Sum_probs=23.4
Q ss_pred HHHHCCEEEEEEEECCCCCCHHHHHHHH
Q ss_conf 8872030018972058898405876756
Q 004481 525 YIERRTLQKLLLVGCSGSGTSTIFKQAK 552 (750)
Q Consensus 525 k~~~k~~iKLLLLGaGESGKSTILKQMK 552 (750)
..+....+|++++|..++||||+++++.
T Consensus 19 ~~~~~~~~ki~v~G~~~~GKSsLi~~l~ 46 (200)
T 2o52_A 19 SIWSDFLFKFLVIGSAGTGKSCLLHQFI 46 (200)
T ss_dssp ---CCEEEEEEEEESTTSSHHHHHHHHH
T ss_pred CCCCCCCEEEEEECCCCCCHHHHHHHHH
T ss_conf 2014752399999909989999999997
No 10
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=1.00 E-value=1 Score=31.11 Aligned_cols=26 Identities=31% Similarity=0.418 Sum_probs=21.9
Q ss_pred CCEEEEEEEECCCCCCHHHHHHHHHH
Q ss_conf 03001897205889840587675654
Q 004481 529 RTLQKLLLVGCSGSGTSTIFKQAKIL 554 (750)
Q Consensus 529 k~~iKLLLLGaGESGKSTILKQMKIL 554 (750)
...+|+.|+|..++||||+++++.-.
T Consensus 27 ~~~~kv~lvG~~g~GKSTLl~~l~~~ 52 (191)
T 1oix_A 27 DYLFKVVLIGDSGVGKSNLLSRFTRN 52 (191)
T ss_dssp SEEEEEEEEECTTSSHHHHHHHHHHS
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHCC
T ss_conf 76139999996998999999999629
Done!