Query 004482
Match_columns 750
No_of_seqs 193 out of 765
Neff 4.9
Searched_HMMs 13730
Date Tue Mar 26 18:38:03 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/004482.a3m -d /local_scratch/syshi/scop70.hhm -v 0 -o /local_scratch/syshi/H1_1788-1792//hhsearch_scop/004482hhsearch_scop
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2bm3a1 b.2.2.2 (A:5-166) Scaf 24.6 9.8 0.00071 14.1 0.6 10 690-699 109-118 (162)
2 d2yvxa3 f.57.1.1 (A:276-448) M 13.5 26 0.0019 11.4 2.6 117 288-417 11-129 (173)
3 d2h8pc1 f.14.1.1 (C:22-78) Pot 5.8 59 0.0043 9.2 1.5 41 288-330 14-54 (57)
4 d1or7a2 a.177.1.1 (A:-1-111) S 3.9 95 0.0069 7.9 2.6 25 708-732 73-97 (113)
5 d2bnma1 a.35.1.3 (A:6-76) Hydr 3.7 1E+02 0.0073 7.7 0.0 21 65-85 28-51 (71)
6 d2e74h1 f.23.27.1 (H:3-29) Pet 3.7 1E+02 0.0076 7.6 1.9 19 459-477 5-23 (27)
7 d1vi7a1 d.14.1.11 (A:3-137) Hy 3.4 1.1E+02 0.0083 7.4 0.2 8 72-79 71-79 (135)
8 d2zjrl1 c.55.4.1 (L:8-111) Rib 3.2 1.2E+02 0.009 7.2 0.2 16 358-373 20-35 (104)
9 d1dx5i1 g.3.11.1 (I:345-387) T 3.1 1.3E+02 0.0093 7.1 0.3 34 552-588 6-39 (43)
10 d3e9oa1 c.55.3.14 (A:1835-2087 3.0 1.3E+02 0.0095 7.0 0.8 12 360-372 57-68 (253)
No 1
>d2bm3a1 b.2.2.2 (A:5-166) Scaffolding dockerin binding protein A, SdbA {Clostridium thermocellum [TaxId: 1515]}
Probab=24.59 E-value=9.8 Score=14.13 Aligned_cols=10 Identities=20% Similarity=0.667 Sum_probs=3.6
Q ss_pred HCCCEEEEEE
Q ss_conf 3691999530
Q 004482 690 DAGVVHILGN 699 (750)
Q Consensus 690 eaGVvYIlG~ 699 (750)
+.|+.=++|=
T Consensus 109 ~tG~ia~IgF 118 (162)
T d2bm3a1 109 ESGIIAKIGF 118 (162)
T ss_dssp CSEEEEEEEE
T ss_pred CCEEEEEEEE
T ss_conf 5417799999
No 2
>d2yvxa3 f.57.1.1 (A:276-448) Mg2+ transporter MgtE {Thermus thermophilus [TaxId: 274]}
Probab=13.45 E-value=26 Score=11.44 Aligned_cols=117 Identities=14% Similarity=0.189 Sum_probs=60.9
Q ss_pred HHHHHHHHCCH--HHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHCCCCCCEEEEEC
Q ss_conf 67898750100--3463017874347630023574337799999999999874553303358999998299975038846
Q 004482 288 FPCLLLAYSGQ--AAYLMNHQDHVVDAFYRSIPDSIYWPVFIVATAAAIVASQATISATFSIIKQALALGCFPRVKVVHT 365 (750)
Q Consensus 288 ~P~LiL~Y~GQ--aA~l~~~p~~~~n~Fy~~~P~~~~wP~~vlAtlAaIIASQA~Isg~FSii~Qai~Lg~fPrvkivhT 365 (750)
.|=|+++-+|+ +|+++..-|+.-+.+-. =..|.|+ ++-++.-+++|+.. ++-+++++|-.-+-. .
T Consensus 11 lpWL~i~l~~~~~~a~ii~~Fe~~l~~~~~---La~fiPl--i~~~gGN~G~Qs~t-----i~iR~La~g~i~~~~---~ 77 (173)
T d2yvxa3 11 VRWLVILILTGMVTSSILQGFESVLEAVTA---LAFYVPV--LLGTGGNTGNQSAT-----LIIRALATRDLDLRD---W 77 (173)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCTTTTTTTS---CCCCSHH--HHHHHHHHHHHHHH-----HHHHHHHTTCSCSSS---H
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHH--HHCCCCHHHHHHHH-----HHHHHHHCCCCCCHH---H
T ss_conf 999999999999999999999999999999---9999999--92587639999999-----999998603433013---9
Q ss_pred CCCCCCCEEECHHHHHHHHHHHEEEEEECCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9855782230122799999863037761381136745221457788999999
Q 004482 366 SKKFLGQIYIPDINWILMILCIAVTAGFKNQSQIGNAYGTAVVIVMLATTLL 417 (750)
Q Consensus 366 S~~~~GQIYIP~vNw~Lmi~~i~v~~~F~~s~~l~~AYGiAV~~vM~iTT~L 417 (750)
-+....+..+..+|=+.+-..+.....+++...++-+-|++...+|.+-++.
T Consensus 78 ~~~l~kE~~vgll~G~~l~~i~~~~~~~~~~~~l~~vi~~sl~~~~~ia~~~ 129 (173)
T d2yvxa3 78 RRVFLKEMGVGLLLGLTLSFLLVGKVYWDGHPLLLPVVGVSLVLIVFFANLV 129 (173)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCSSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf 9999999999999999999989999961445089999999999999999999
No 3
>d2h8pc1 f.14.1.1 (C:22-78) Potassium channel protein {Streptomyces coelicolor [TaxId: 1902]}
Probab=5.77 E-value=59 Score=9.21 Aligned_cols=41 Identities=17% Similarity=0.267 Sum_probs=25.1
Q ss_pred HHHHHHHHCCHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHH
Q ss_conf 6789875010034630178743476300235743377999999
Q 004482 288 FPCLLLAYSGQAAYLMNHQDHVVDAFYRSIPDSIYWPVFIVAT 330 (750)
Q Consensus 288 ~P~LiL~Y~GQaA~l~~~p~~~~n~Fy~~~P~~~~wP~~vlAt 330 (750)
+-++++--++-..|+..+.. ++.-|.++|+.+.|-..-+.|
T Consensus 14 ~~~i~i~~~s~~~y~~E~~~--~~~~f~sip~a~WWaivT~TT 54 (57)
T d2h8pc1 14 LLVIVLLAGSYLAVLAERGA--PGAQLITYPRALWWACETATT 54 (57)
T ss_dssp HHHHHHHHHHHHHHHHHTTS--TTCCCCSHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHCCC--CCCCCCCCCHHHHHHEEEEEC
T ss_conf 99999999999999983589--975536450644645035431
No 4
>d1or7a2 a.177.1.1 (A:-1-111) SigmaE factor (RpoE) {Escherichia coli [TaxId: 562]}
Probab=3.93 E-value=95 Score=7.89 Aligned_cols=25 Identities=16% Similarity=0.207 Sum_probs=21.2
Q ss_pred CCHHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 9547899999999999732038874
Q 004482 708 SKFYKKIAIDYIYAFLRKICRENSV 732 (750)
Q Consensus 708 SsflKK~vIn~~Y~FLRkNcR~~~~ 732 (750)
.+|+.+++.|.++.++|++-|.+..
T Consensus 73 ~~wl~~I~~n~~~d~~R~~~r~~~~ 97 (113)
T d1or7a2 73 YTWLYRIAVNTAKNYLVAQGRRPPS 97 (113)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCCTH
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCCC
T ss_conf 9999999999999999996478888
No 5
>d2bnma1 a.35.1.3 (A:6-76) Hydroxypropylphosphonic acid epoxidase Fom4, N-terminal domain {Streptomyces wedmorensis [TaxId: 43759]}
Probab=3.75 E-value=1e+02 Score=7.73 Aligned_cols=21 Identities=43% Similarity=0.786 Sum_probs=14.4
Q ss_pred CCCCCC---CCCCCCCHHHHHHHH
Q ss_conf 456657---678998718988987
Q 004482 65 LGTSPL---ANDSGQGGTFALYSL 85 (750)
Q Consensus 65 IGTSPL---Add~GEGGtfALysL 85 (750)
+|-.|- |=.|||||-+.|..|
T Consensus 28 lgetpetvaawengeggeltltql 51 (71)
T d2bnma1 28 LGETPETVAAWENGEGGELTLTQL 51 (71)
T ss_dssp HTCCHHHHHHHHTTTCTTCBHHHH
T ss_pred HCCCCHHHHHHHCCCCCEEEHHHH
T ss_conf 768906788863588750529998
No 6
>d2e74h1 f.23.27.1 (H:3-29) PetN subunit of the cytochrome b6f complex {Mastigocladus laminosus [TaxId: 83541]}
Probab=3.65 E-value=1e+02 Score=7.64 Aligned_cols=19 Identities=37% Similarity=0.964 Sum_probs=10.4
Q ss_pred CCHHHHHHHHHHHHHHHHH
Q ss_conf 7088999999887555646
Q 004482 459 GWVPLVIAAAFLVIMYVWH 477 (750)
Q Consensus 459 GW~pl~la~v~~~iM~~W~ 477 (750)
||+.++.-..-..-|.+|-
T Consensus 5 gwv~llvvftwsiamvvwg 23 (27)
T d2e74h1 5 GWVALLVVFTWSIAMVVWG 23 (27)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHEEEEEEEC
T ss_conf 5758888763223468871
No 7
>d1vi7a1 d.14.1.11 (A:3-137) Hypothetical protein YigZ, N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=3.40 E-value=1.1e+02 Score=7.40 Aligned_cols=8 Identities=50% Similarity=0.999 Sum_probs=0.0
Q ss_pred CCCCC-CHH
Q ss_conf 78998-718
Q 004482 72 NDSGQ-GGT 79 (750)
Q Consensus 72 dd~GE-GGt 79 (750)
||+|| +||
T Consensus 71 sDDGEP~Gt 79 (135)
T d1vi7a1 71 SDDGEPAGT 79 (135)
T ss_dssp ECTTSCTTS
T ss_pred CCCCCCCCC
T ss_conf 589980787
No 8
>d2zjrl1 c.55.4.1 (L:8-111) Ribosomal protein L18 (L18p) {Deinococcus radiodurans [TaxId: 1299]}
Probab=3.17 E-value=1.2e+02 Score=7.17 Aligned_cols=16 Identities=38% Similarity=0.478 Sum_probs=0.0
Q ss_pred CCEEEEECCCCCCCCE
Q ss_conf 7503884698557822
Q 004482 358 PRVKVVHTSKKFLGQI 373 (750)
Q Consensus 358 PrvkivhTS~~~~GQI 373 (750)
||+.|.-|+++++.||
T Consensus 20 pRL~V~rSnkhiyaQi 35 (104)
T d2zjrl1 20 LRLSVYRSSKHIYAQI 35 (104)
T ss_dssp EEECCCTTSSCCCCCE
T ss_pred CEEEEEECCCEEEEEE
T ss_conf 6799997067068999
No 9
>d1dx5i1 g.3.11.1 (I:345-387) Thrombomodulin, different EGF-like domains {Human (Homo sapiens) [TaxId: 9606]}
Probab=3.09 E-value=1.3e+02 Score=7.08 Aligned_cols=34 Identities=9% Similarity=0.270 Sum_probs=0.0
Q ss_pred CCCCCCCEEEEEEECCCCCCEEEEEEEEECCCCCCCH
Q ss_conf 1558993699977569987789999986304478862
Q 004482 552 YTVPEEERFLVKRIGPKNFHMFRCVARYGYKDLHKKD 588 (750)
Q Consensus 552 P~V~~~eR~~v~~i~~~~~~~yR~vvryGY~d~~~~~ 588 (750)
|--...-.+.-..+++ +-|||+-+-||+-.+++|
T Consensus 6 PCf~~~CE~qCqP~~~---~~Y~CiCaeGFaP~p~~P 39 (43)
T d1dx5i1 6 PCFRANCEYQCQPLDQ---TSYLCVCAEGFAPIPHEP 39 (43)
T ss_dssp GGGGCCCSSEEEECSS---SCEEEECCTTEEEETTEE
T ss_pred CCCCCCCCEEEEECCC---CCCEEEECCCCCCCCCCC
T ss_conf 4569974034151798---752678126654589986
No 10
>d3e9oa1 c.55.3.14 (A:1835-2087) Pre-mRNA-splicing factor 8, Prp8 {Saccharomyces cerevisiae [TaxId: 4932]}
Probab=3.02 E-value=1.3e+02 Score=7.01 Aligned_cols=12 Identities=50% Similarity=0.886 Sum_probs=0.0
Q ss_pred EEEEECCCCCCCC
Q ss_conf 0388469855782
Q 004482 360 VKVVHTSKKFLGQ 372 (750)
Q Consensus 360 vkivhTS~~~~GQ 372 (750)
+||+|||. ..||
T Consensus 57 lKiiHtSv-waGQ 68 (253)
T d3e9oa1 57 LKIIHTSV-WAGQ 68 (253)
T ss_dssp EEEECGGG-GTTC
T ss_pred EEEEEEHH-CCCH
T ss_conf 99986002-0555
Done!