Query 004485
Match_columns 749
No_of_seqs 190 out of 1400
Neff 6.0
Searched_HMMs 29240
Date Tue Mar 26 17:58:04 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/004485.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_1793-1796//hhsearch_pdb/004485hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1ygp_A Yeast glycogen phosphor 1.0 1 1 1748.8 53.4 736 1-747 104-879 (879)
2 1l5w_A Maltodextrin phosphoryl 1.0 1 1 1677.7 58.1 725 1-745 66-796 (796)
3 2gj4_A Glycogen phosphorylase, 1.0 1 1 1674.5 63.8 734 1-748 76-821 (824)
4 2c4m_A Glycogen phosphorylase; 1.0 1 1 1651.4 59.6 720 1-748 67-793 (796)
5 3vue_A GBSS-I, granule-bound s 1.0 1 1 385.1 21.1 485 40-743 18-511 (536)
6 3nb0_A Glycogen [starch] synth 1.0 1 1 230.8 22.9 366 207-739 158-629 (725)
7 1rzu_A Glycogen synthase 1; gl 1.0 1 1 172.7 16.5 334 240-741 129-473 (485)
8 2qzs_A Glycogen synthase; glyc 1.0 1 1 170.8 18.8 336 240-743 128-476 (485)
9 3s28_A Sucrose synthase 1; gly 1.0 1 1 144.8 17.0 332 240-738 406-764 (816)
10 3fro_A GLGA glycogen synthase; 1.0 1 1 134.6 22.2 330 209-743 99-430 (439)
No 1
>1ygp_A Yeast glycogen phosphorylase; phosphorylated form, glycosyltransferase; HET: PLP; 2.80A {Saccharomyces cerevisiae} SCOP: c.87.1.4
Probab=1.00 E-value=1 Score=1748.77 Aligned_cols=736 Identities=49% Similarity=0.859 Sum_probs=705.2
Q ss_pred CCCCCCCCHHHHHHCCCCHHHH-------------HHHHHHCCCCHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHCCCCC
Q ss_conf 9534880327999706929999-------------999997299989999401003789998400055448644216998
Q 004485 1 MEFLQGRTLTNAIGSLDIQNAY-------------ADALNNLGHVLEEIAEQEKDAALGNGGLGRLASCFLDSMATLNLP 67 (749)
Q Consensus 1 ~Efl~Gr~l~~~l~nl~~~~~~-------------~~~l~~~g~~~e~~~~~e~d~~lg~GGLG~LAgd~l~S~a~l~ip 67 (749)
|||||||+|.|||+|||+++++ +++|+++|++||+++++|+||+|||||||||||||||||||||+|
T Consensus 104 ~EFL~Gr~L~n~l~nlg~~~~~~~~~~~~~~~~~~~~al~~lg~~l~~~~~~E~da~LGnGGLGrLAacfLdS~AtLglP 183 (879)
T 1ygp_A 104 LEFLMGRALDNALINMKIEDPEDPAASKGKPREMIKGALDELGFKLEDVLDQEPDAGLGNGGLGRLAACFVDSMATEGIP 183 (879)
T ss_dssp SCCCCBCHHHHHHHSCCC------------CHHHHHHHHHHHTCCHHHHHTTCCCBCSCCSHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHHHCCCHHHHCHHHCCCCCHHHHHHHHHHCCCCHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCC
T ss_conf 36423567887998667743313121146615679999987299999998538898867771788899999999747998
Q ss_pred EEEEEECCCCCCCEEEEECCCEEEECCCCCCCCCCCCCCCCCEEEEEEECCEEEE--CC-CCCE--EEECCEEEEEEEEE
Q ss_conf 1898625688530278518915430412003699841003780579997984888--59-9934--54389579999964
Q 004485 68 AWGYGLRYRYGLFKQKITKQGQEEVAEDWLEKFSPWEVVRHDVVFPVRFFGSVMV--NP-NGTR--KWVGGEVVQAVAYD 142 (749)
Q Consensus 68 ~~g~gL~Y~~GyF~Q~i~dG~Q~e~~d~W~~~~~pw~~~~~~~~~~v~~~g~~~~--~~-~g~~--~w~~~~~v~a~~yd 142 (749)
++||||||+||||+|+|.||||+|.||+|+..+||||++|++.+++|+|+|+++. .. +|+. .|++++.|+|||||
T Consensus 184 ~~GyGlrY~~G~F~Q~i~dG~Q~E~pd~Wl~~g~pwe~~r~~~~~~V~f~G~v~~~~~~~~G~~~~~w~~~~~v~av~yD 263 (879)
T 1ygp_A 184 AWGYGLRYEYGIFAQKIIDGYQVETPDYWLNSGNPWEIERNEVQIPVTFYGYVDRPEGGKTTLSASQWIGGERVLAVAYD 263 (879)
T ss_dssp EEEEEECCSSCSCEEEEETTEEEEECCCTTTTCCTTCEEEEEEEEEEEESCEEECC----CTTSCCEEECSEEEEEEEEE
T ss_pred EEEEEEEECCCCEEEEEECCEEEEECCCHHCCCCCCCCCCCCCEEEEEECCEEEECCCCCCCCCEEEEECCCEEEEEECC
T ss_conf 47987234378637882388368736522104994222577726898508877643546788501476078379999821
Q ss_pred ECCCCCCCCCEEEEEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 23688888741789999964378765444458512456785345200432311479983001031110323555614999
Q 004485 143 IPIPGYKTKNTISLRLWDAKASAEDFNLFQFNDGQYESAAQLHSRAQQICAVLYPGDSTEEGKLLRLKQQFFLCSASLQD 222 (749)
Q Consensus 143 ~~i~g~~~~~~~~lrlw~a~v~~~~~~l~~~~~~~~~~~~~~~~~~~~It~~LY~~D~~~~gk~lRl~Qe~fl~~a~l~~ 222 (749)
+|||||+++++|+||||++++++ .|+|..|+.|+|..++++.+.+|+||.+|||+|++++||++||+||||||+||+||
T Consensus 264 ~Pi~Gy~~~~~n~lRLW~a~~~~-~f~l~~fn~gdy~~a~~~~~~~e~IT~vLYp~D~~~~GkeLRLkQEyfl~sa~lqd 342 (879)
T 1ygp_A 264 FPVPGFKTSNVNNLRLWQARPTT-EFDLNKFNNGDYKNSVAQQQRAESITAVLYPNDNFAQGKELRLKQQYFWCAASLHD 342 (879)
T ss_dssp EEEECSSCCCEEEEEEEEEEESC-SCCHHHHHTTCHHHHTHHHHHHHHHHHSSSCCCSSHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCEEEEEEEEECCCC-CCCHHHCCCCCHHHHHHCHHHHHCHHCCCCCCCCCCCCHHHHEEHHHHHHHHHHHH
T ss_conf 56467677855899988715674-03532126765767655737560442067799998644545200144536468999
Q ss_pred HHHHHHHCCCCCCCCCCCCCCEEEECCCCHHCHHHHHHHHHHHHCCCCHHHHHHHCCCEEEEEECCCCHHHHHHCCHHHH
Q ss_conf 99999970466433349998189859977011199999999985099957886501660898515880356633219999
Q 004485 223 MILRFKERKSGRQWSEFPSKVAVQLNDTHPTLAIPELMRLLMDEEGLGWDEAWDITTRTVAYTNHTVLPEALEKWSQAVM 302 (749)
Q Consensus 223 i~r~~~~~~g~~~l~~l~~~~viHlND~H~al~~~ellR~l~~~~~l~~d~a~~~~~~~~vfT~HT~~~~G~e~f~~~l~ 302 (749)
|+|+|++.++ +|+.|+++++||||||||||++|||||+++|++|++|++||++|+++|+||||||+|||+|+||++|+
T Consensus 343 ilr~~~~~~~--~l~~l~~~~~ihlNDtHpalai~ELmR~L~d~~gl~wd~Aw~iv~~t~~yTnHT~lpealE~wpv~l~ 420 (879)
T 1ygp_A 343 ILRRFKKSKR--PWTEFPDQVAIQLNDTHPTLAIVELQRVLVDLEKLDWHEAWDIVTKTFAYTNHTVMQEALEKWPRRLF 420 (879)
T ss_dssp HHHHHHHHTC--CGGGHHHHEEEEEESSTTTHHHHHHHHHHHHTTCCCHHHHHHHHHHHEEEEECCCSGGGSCEEEHHHH
T ss_pred HHHHHHHHCC--CHHHCCCCEEEECCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHEEEECCCCCHHHHCCCCHHHH
T ss_conf 9999998189--85565885199816980888899999997541189999999999875100067686576553889999
Q ss_pred HHHCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCC--CCCHHCHHHHCCCCCHHHHHHHHHHHHHHHHC
Q ss_conf 9641467999999999999999974699811001135324799998--31130111220563022245759998752102
Q 004485 303 WKLLPRHMEIIEEIDKRFIAMVRSTRSDLESKIPSMCILDNNPKKP--VVRMANLCVVSAHTVNGVAQLHSDILKADLFA 380 (749)
Q Consensus 303 ~~~lp~~~~ii~~in~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~--~vnm~~lai~~S~~vNgVS~lh~ei~~~~~~~ 380 (749)
+++||||++||++||.+|+..+...++.+++++.+|+++++ +.+ +|||++||+++||+|||||++|++++|+.+|+
T Consensus 421 ~~lLpr~~~II~ein~~f~~~~~~~~~~d~~~~~~l~ii~~--~~~~~~v~MA~LAi~~S~~vNGVs~LH~ev~k~~~f~ 498 (879)
T 1ygp_A 421 GHLLPRHLEIIYDINWFFLEDVAKKFPKDVDLLSRISIIEE--NSPERQIRMAFLAIVGSHKVNGVVELHSELIKTTIFK 498 (879)
T ss_dssp HHHCHHHHHHHHHHHHHHHHHHHHHSTTCTHHHHHHCSEEC--CSSSCEEEHHHHHHHHEEEEEESSHHHHHHHHHTTTH
T ss_pred HHHCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCEECC--CCCCCEEEHHHHHHHHCCCEEEEHHHHHHHHHHHHHH
T ss_conf 98778489999999999999999876998999975122136--8875404238999973580247527778888887768
Q ss_pred CHHHHCCC-CCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCC--CCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 70000578-86531247785454566791235899852286--3001470157642004899789999999999999999
Q 004485 381 DYVSLWPN-KLQNKTNGITPRRWLRFCNPELSKIITKWLKT--DQWVTNLDLLVGLRQFADNTELQAEWESAKMASKKHL 457 (749)
Q Consensus 381 ~~~~l~p~-ki~~ItNGI~~~~W~~~~np~~~~li~~~~~~--~~w~~~~~~l~~l~~~~~d~~~~~~~~~~K~~nK~~L 457 (749)
+|+.+||. ||.+||||||+|||+.+|||++++++++++|. ++|.++++.|++|.++++|++|+++|+++|++||++|
T Consensus 499 df~~l~P~~kf~n~TNGVt~rrWl~~~Np~L~~Li~~~iG~~~~~W~~d~~~L~~l~~~~~D~~f~~~l~~iK~~nK~~L 578 (879)
T 1ygp_A 499 DFIKFYGPSKFVNVTNGITPRRWLKQANPSLAKLISETLNDPTEEYLLDMAKLTQLEKYVEDKEFLKKWNQVKLNNKIRL 578 (879)
T ss_dssp HHHHHHCGGGEEECCCCBCHHHHTTTTCHHHHHHHHHHTTCTTCGGGTCGGGGGGGGGGGGCTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHCCCCCCCCCCCCCCCCHHHHHCCHHHHHHHHHHCCCCHHHHHHCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
T ss_conf 78874888756682799187413554198899999986298805545488999998862996999999999999999999
Q ss_pred HHHHHHHH-CCCCC-----CCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHCC------CC-CCCCCCCEEEEEEECC
Q ss_conf 99999994-99789-----997068673553100000000256799999976119------22-3379999599997228
Q 004485 458 ADYIWRVT-GVTID-----PNSLFDIQVKRIHEYKRQLLNILGAIYRYKKLKEMS------PQ-ERKKTTPRTIMIGGKA 524 (749)
Q Consensus 458 ~~~i~~~~-g~~~~-----~~~~~~~~vrR~~eyKR~~Lnil~~i~~~~~i~~~~------~~-~~~~~~p~q~If~GKa 524 (749)
++||++++ |+.+| |+++||+|||||||||||+||+|+++++|.+|++ + |. .+++.+|+||||||||
T Consensus 579 a~~i~~~~~g~~ld~~~~~p~sLfdvq~KR~heYKRq~LniL~ii~ry~~Ik~-~~~~~~~p~~~~~~~~P~~~IFaGKA 657 (879)
T 1ygp_A 579 VDLIKKENDGVDIINREYLDDTLFDMQVKRIHEYKRQQLNVFGIIYRYLAMKN-MLKNGASIEEVARKYPRKVSIFGGKS 657 (879)
T ss_dssp HHHHHHTTTTCCCSCSTTGGGCEEEEEESCCCGGGTHHHHHHHHHHHHHHHHH-HHHTTCCHHHHHHHSCCEEEEEECCC
T ss_pred HHHHHHHCCCCEECCCCCCCCEEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHH-CCCCCCCCCCCCCCCCCEEEEEECCC
T ss_conf 99999975896715888999722565410214767778898777999999982-76545787533367798189996268
Q ss_pred CCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCEEE
Q ss_conf 95898789999999998765339958899335999838897789732357631123687775678821136761384264
Q 004485 525 FATYTNAKRIVKLVNDVGEVVNTDPEVNSYLKVVFVPNYNVSVAELLIPGSELSQHISTAGMEASGTSNMKFSLNGCLII 604 (749)
Q Consensus 525 ~P~y~~~K~iIk~I~~la~~in~d~~~~~~lkVvFlenY~v~lA~~l~~g~Di~l~~s~~~~EAsGTs~Mkam~NG~l~i 604 (749)
||+|.+||+|||+|++++++||+||+++++|||||+|||||++|++|+||||||+|+|+||+||||||||||||||+|+|
T Consensus 658 aP~y~~aK~iIklI~~va~~iN~Dp~v~~~LKVVFlenY~VslAe~iipaaDvseqistag~EASGTsnMKfalNGaLtl 737 (879)
T 1ygp_A 658 APGYYMAKLIIKLINCVADIVNNDESIEHLLKVVFVADYNVSKAEIIIPASDLSEHISTAGTEASGTSNMKFVMNGGLII 737 (879)
T ss_dssp CTTCHHHHHHHHHHHHHHHHHTTCGGGTTSEEEEEETTCCHHHHHHHGGGCSEEEECCCTTCCSCCHHHHHHHTTTCEEE
T ss_pred CCCCHHHHHHHHHHHHHHHHHCCCHHHCCCEEEEEECCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHCCCEEE
T ss_conf 87868899999999999988516731189548999289987999875004456541899972235842568997487044
Q ss_pred EECCCHHHHHHHHHCCCCEEEECCCCCCCHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCCCC---CHHHHHHHHHCCCCC
Q ss_conf 40576258999983485277615754300435520168999999257999988841988999---959899998208899
Q 004485 605 GTLDGANVEIRQEIGEENFFLFGAVAEQVPKLRKEREDGLFKPDPRFEEAKQFIRSGAFGSY---DYNPLLDSLEGNTGY 681 (749)
Q Consensus 605 stlDG~~vE~~~~~Gg~n~~~fG~~~d~v~~~~~~~~y~~~~~~~~~~~~~~~~~~g~f~~~---~~~~i~~~l~~~~~~ 681 (749)
||+|||||||++++|++|+|+||.++++|.+++.++.+..|+.+|.+++++|++.+|.|++. +|++||++|..+
T Consensus 738 gtlDGanvEi~e~vG~eN~fiFG~~~~ev~~~~~~~~~~~y~~~~~l~~v~d~i~~g~f~~~~~~~f~~l~~~L~~~--- 814 (879)
T 1ygp_A 738 GTVDGANVEITREIGEDNVFLFGNLSENVEELRYNHQYHPQDLPSSLDSVLSYIESGQFSPENPNEFKPLVDSIKYH--- 814 (879)
T ss_dssp EESCTHHHHHHHHHCGGGSEEESCCHHHHHHHHHHHHHSCCCCCHHHHHHHHHTC--CCCTTSTTTTHHHHHHHHHS---
T ss_pred ECCCCHHHHHHHHCCCCCEEECCCCHHHHHHHHHHCCHHCCCCCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCC---
T ss_conf 13453567878870866579806888999999872953103789899999999955998999837899999998517---
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHCHH-HHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCC
Q ss_conf 988633114880679999999999810998-999999997205899996899999999972465545
Q 004485 682 GRGDYFLVGYDFPSYLEAQDRVDQAYKDQK-KWLKMSILSTAGSGKFSSDRTIAQYAKEIWNITECR 747 (749)
Q Consensus 682 ~~~D~~~v~~Df~~y~~~q~~v~~~Y~d~~-~W~~~~~~~ia~~g~FSsdrsi~eY~~~iw~~~~~~ 747 (749)
+|+|+|++||+||++||++|...|.|++ +|.+|++.|||.+|+|||||||+||+++||+++|++
T Consensus 815 --~D~y~vl~Df~sY~~~q~~v~~~Y~d~~~~W~~~~i~NiA~~G~FSSDRtI~eYa~~IW~~~p~~ 879 (879)
T 1ygp_A 815 --GDYYLVSDDFESYLATHELVDQEFHNQRSEWLKKSVLSLANVGFFSSDRCIEEYSDTIWNVEPVT 879 (879)
T ss_dssp --TTTTCHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHGGGBHHHHHHHHHHHTTCCCCC-
T ss_pred --CCEEEEECCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCC
T ss_conf --98478856489999999999998669579999999999975594585679999999965778789
No 2
>1l5w_A Maltodextrin phosphorylase; enzymatic catalysis, substrate complex, trans; HET: GLC PLP; 1.80A {Escherichia coli} SCOP: c.87.1.4 PDB: 1l5v_A* 1l6i_A* 2asv_A* 2av6_A* 2aw3_A* 2azd_A* 1qm5_A* 1e4o_A* 2ecp_A* 1ahp_A*
Probab=1.00 E-value=1 Score=1677.69 Aligned_cols=725 Identities=45% Similarity=0.782 Sum_probs=695.3
Q ss_pred CCCCCCCCHHHHHHCCCCHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHCCCCCEEEEEECCCCCCC
Q ss_conf 95348803279997069299999999972999899994010037899984000554486442169981898625688530
Q 004485 1 MEFLQGRTLTNAIGSLDIQNAYADALNNLGHVLEEIAEQEKDAALGNGGLGRLASCFLDSMATLNLPAWGYGLRYRYGLF 80 (749)
Q Consensus 1 ~Efl~Gr~l~~~l~nl~~~~~~~~~l~~~g~~~e~~~~~e~d~~lg~GGLG~LAgd~l~S~a~l~ip~~g~gL~Y~~GyF 80 (749)
|||||||+|.|||+|||++++|+++|+++|++||+++++|+||+|||||||||||||||||||||+|++||||||+||||
T Consensus 66 ~Efl~gr~L~n~l~nlg~~~~~~~~l~~~g~~l~~~~~~E~d~~LgnGGLGrLAacfldS~a~l~~p~~G~Gi~Y~~G~F 145 (796)
T 1l5w_A 66 MEFLIGRLTGNNLLNLGWYQDVQDSLKAYDINLTDLLEEEIDPALGNGGLGRLAACFLDSMATVGQSATGYGLNYQYGLF 145 (796)
T ss_dssp SCCCCCCCHHHHHHHHTCHHHHHHHHHTTTCCHHHHHTTCCCCCCCCSHHHHHHHHHHHHHHHTTCCEEEEEECCSSCSC
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEEEECCCCE
T ss_conf 47747888887888567589999999980999899985288867678737787999999897479982788621327762
Q ss_pred EEEEECCCEEEECCCCCCCCCCCCCCCCCEEEEEEECCEEEECCCCCEEEECCEEEEEEEEEECCCCCCCCCEEEEEEEE
Q ss_conf 27851891543041200369984100378057999798488859993454389579999964236888887417899999
Q 004485 81 KQKITKQGQEEVAEDWLEKFSPWEVVRHDVVFPVRFFGSVMVNPNGTRKWVGGEVVQAVAYDIPIPGYKTKNTISLRLWD 160 (749)
Q Consensus 81 ~Q~i~dG~Q~e~~d~W~~~~~pw~~~~~~~~~~v~~~g~~~~~~~g~~~w~~~~~v~a~~yd~~i~g~~~~~~~~lrlw~ 160 (749)
+|+|.||||+|.||+|++.++|||++|++.+++|+|+|+++. + + +|++++.|+|||||+|||||+++++|+||||+
T Consensus 146 ~Q~i~dG~Q~E~~d~wl~~~~pwe~~r~~~~~~V~f~g~~~~--~-~-~w~~~~~v~av~yd~pi~Gy~~~~~n~lrlW~ 221 (796)
T 1l5w_A 146 RQSFVDGKQVEAPDDWHRSNYPWFRHNEALDVQVGIGGKVTK--D-G-RWEPEFTITGQAWDLPVVGYRNGVAQPLRLWQ 221 (796)
T ss_dssp EEEEETTEEEEECCCCCGGGCTTCEECGGGCEEEEESCEECT--T-S-CEECSEEEEEEEEEEEEECSSSCCEEEEEEEE
T ss_pred EEEECCCEEEEECCCCCCCCCCCEEECCCCEEEEEECCEEEE--C-C-EECCCCEEEEEEECCCCCCCCCCCEEEEEEEE
T ss_conf 687028856871676334799622406882799860998854--1-2-20488269999800563677777459999988
Q ss_pred EECCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC
Q ss_conf 64378765444458512456785345200432311479983001031110323555614999999999704664333499
Q 004485 161 AKASAEDFNLFQFNDGQYESAAQLHSRAQQICAVLYPGDSTEEGKLLRLKQQFFLCSASLQDMILRFKERKSGRQWSEFP 240 (749)
Q Consensus 161 a~v~~~~~~l~~~~~~~~~~~~~~~~~~~~It~~LY~~D~~~~gk~lRl~Qe~fl~~a~l~~i~r~~~~~~g~~~l~~l~ 240 (749)
+++++ .|++..|+.|+|..++++.+.+|+||++|||+|++++||++||+||||||+|++|+|+|++++.+ .+++.|+
T Consensus 222 a~~~~-~f~l~~fn~gdy~~a~~~~~~~~~It~~LYp~D~~~~Gk~lRL~Qe~ff~~a~lq~ilr~~~~~~--~~~~~l~ 298 (796)
T 1l5w_A 222 ATHAH-PFDLTKFNDGDFLRAEQQGINAEKLTKVLYPNDNAFEGKKLRLMQQYFQCACSVADILRRHHLAG--RKLHELA 298 (796)
T ss_dssp EECSS-CCCHHHHHTTCTTGGGHHHHHHHGGGTCSSCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT--CCGGGHH
T ss_pred ECCCC-CCCHHHCCCCCHHHHHHCHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCC--CCHHHCC
T ss_conf 24686-34754327765766655647674366447699986443988998799999999999999998708--9844558
Q ss_pred CCCEEEECCCCHHCHHHHHHHHHHHHCCCCHHHHHHHCCCEEEEEECCCCHHHHHHCCHHHHHHHCHHHHHHHHHHHHHH
Q ss_conf 98189859977011199999999985099957886501660898515880356633219999964146799999999999
Q 004485 241 SKVAVQLNDTHPTLAIPELMRLLMDEEGLGWDEAWDITTRTVAYTNHTVLPEALEKWSQAVMWKLLPRHMEIIEEIDKRF 320 (749)
Q Consensus 241 ~~~viHlND~H~al~~~ellR~l~~~~~l~~d~a~~~~~~~~vfT~HT~~~~G~e~f~~~l~~~~lp~~~~ii~~in~~~ 320 (749)
+|++||||||||||++|||||.++|+++++|++||++++.+|+||||||+|||+|+||.++++++||++++||++||.+|
T Consensus 299 ~p~viHlNDtHpal~i~ElmR~l~d~~~~~~d~A~~i~~~~~vyT~HTl~~egle~wp~~l~~~~lpr~~~ii~~I~~~f 378 (796)
T 1l5w_A 299 DYEVIQLNDTHPTIAIPELLRVLIDEHQMSWDDAWAITSKTFAYTNHTLMPEALERWDVKLVKGLLPRHMQIINEINTRF 378 (796)
T ss_dssp HHEEEEEESSTTTTHHHHHHHHHHHHSCCCHHHHHHHHTTTEEEECCCCSGGGSCEEEHHHHHHHCHHHHHHHHHHHHHH
T ss_pred CCCEEEECCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHCCEEEEECCCCHHHHHCCCHHHHHHHHHHHHHHHHCCCHHH
T ss_conf 76189844884286899999998664179878999986122778856871766630899999987579888871669999
Q ss_pred HHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHCHHHHCCCCCHHHHHHHHHHHHHHHHCCHHHHCCCCCCCCCCCCCCC
Q ss_conf 99999746998110011353247999983113011122056302224575999875210270000578865312477854
Q 004485 321 IAMVRSTRSDLESKIPSMCILDNNPKKPVVRMANLCVVSAHTVNGVAQLHSDILKADLFADYVSLWPNKLQNKTNGITPR 400 (749)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~e~~~~~~~vnm~~lai~~S~~vNgVS~lh~ei~~~~~~~~~~~l~p~ki~~ItNGI~~~ 400 (749)
++.+...+|.+++.+.+++++++ ++|||+++||++|++|||||++|++++++++|++|+.++|+||.|||||||++
T Consensus 379 ~~~~~~~~~~~~~~~~~~~i~~~----~~vnMa~lai~~S~~VNgVS~lH~e~ik~~~f~~~~~~~p~k~~~iTNGI~~r 454 (796)
T 1l5w_A 379 KTLVEKTWPGDEKVWAKLAVVHD----KQVHMANLCVVGGFAVNGVAALHSDLVVKDLFPEYHQLWPNKFHNVTNGITPR 454 (796)
T ss_dssp HHHHHHHSTTCHHHHHHHCSEET----TEEEHHHHHHHHSSEEEESSHHHHHHHHHTTSHHHHHHCGGGEEECCCCBCHH
T ss_pred HHHHHHHCCCCHHHHHHHHCCCC----CCCCHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHH
T ss_conf 99999865982887743122107----95448999998437113313899999876776679870766338884888477
Q ss_pred CCCCCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECC
Q ss_conf 54566791235899852286300147015764200489978999999999999999999999994997899970686735
Q 004485 401 RWLRFCNPELSKIITKWLKTDQWVTNLDLLVGLRQFADNTELQAEWESAKMASKKHLADYIWRVTGVTIDPNSLFDIQVK 480 (749)
Q Consensus 401 ~W~~~~np~~~~li~~~~~~~~w~~~~~~l~~l~~~~~d~~~~~~~~~~K~~nK~~L~~~i~~~~g~~~~~~~~~~~~vr 480 (749)
+|+.+|||+++++|+++++ ++|.+|++.|+++.++++|++|+++|+++|++||++|+++|++++|+.+||++|||+|||
T Consensus 455 rWl~~~NP~l~~li~~~~g-~~w~~d~~~l~~l~~~~~d~~~~~~l~~~K~~nK~~L~~~l~~~~Gl~vdpd~l~~~~vk 533 (796)
T 1l5w_A 455 RWIKQCNPALAALLDKSLQ-KEWANDLDQLINLEKFADDAKFRQQYREIKQANKVRLAEFVKVRTGIEINPQAIFDIQIK 533 (796)
T ss_dssp HHTTTTCHHHHHHHHHHCS-SCCTTCGGGGGGGGGGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCTTSEEEEEES
T ss_pred HHHCCCCHHHHHHHHHHCC-CCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEE
T ss_conf 8500259768899998549-601148899998885399789999999999999999999999983998599966676663
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEE
Q ss_conf 53100000000256799999976119223379999599997228958987899999999987653399588993359998
Q 004485 481 RIHEYKRQLLNILGAIYRYKKLKEMSPQERKKTTPRTIMIGGKAFATYTNAKRIVKLVNDVGEVVNTDPEVNSYLKVVFV 560 (749)
Q Consensus 481 R~~eyKR~~Lnil~~i~~~~~i~~~~~~~~~~~~p~q~If~GKa~P~y~~~K~iIk~I~~la~~in~d~~~~~~lkVvFl 560 (749)
|||+||||+||+++++++|.+|++ +|.. +.+|+||||+|||||+|++||+|||+|++++++||+||+++++|||+|+
T Consensus 534 Rl~eYKRq~Lnil~ii~~~~~i~~-~~~~--~~~p~q~If~GKA~P~y~~aK~iIk~i~~va~~in~Dp~~~~~lKVvfl 610 (796)
T 1l5w_A 534 RLHEYKRQHLNLLHILALYKEIRE-NPQA--DRVPRVFLFGAKAAPGYYLAKNIIFAINKVADVINNDPLVGDKLKVVFL 610 (796)
T ss_dssp CCCGGGTHHHHHHHHHHHHHHHHT-CTTC--CCCCEEEEEECCCCTTCHHHHHHHHHHHHHHHHHHTCTTTGGGEEEEEC
T ss_pred CCHHHCCCCEEHHHHHHHHHHHHC-CCCC--CCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEE
T ss_conf 053541548708989999999850-8877--7899499999627765788899999999999874246014996079997
Q ss_pred CCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCEEEEECCCHHHHHHHHHCCCCEEEECCCCCCCHHHHHHC
Q ss_conf 38897789732357631123687775678821136761384264405762589999834852776157543004355201
Q 004485 561 PNYNVSVAELLIPGSELSQHISTAGMEASGTSNMKFSLNGCLIIGTLDGANVEIRQEIGEENFFLFGAVAEQVPKLRKER 640 (749)
Q Consensus 561 enY~v~lA~~l~~g~Di~l~~s~~~~EAsGTs~Mkam~NG~l~istlDG~~vE~~~~~Gg~n~~~fG~~~d~v~~~~~~~ 640 (749)
|||||++||+|+||||+|||||+||+|||||||||||+||+||||||||||+|+.+++|++|||+||..+++|.+++..+
T Consensus 611 ~nY~vslA~~I~~gaDv~l~~S~a~~EAsGTs~MKam~NGaL~iGtLDGanvEi~e~vG~~NgF~FG~~~~ev~~l~~~~ 690 (796)
T 1l5w_A 611 PDYCVSAAEKLIPAADISEQISTAGKEASGTGNMKLALNGALTVGTLDGANVEIAEKVGEENIFIFGHTVEQVKAILAKG 690 (796)
T ss_dssp SSCCHHHHHHHGGGCSEEEECCCTTTCCCCSHHHHHHHTTCEEEECSCTTHHHHHHHHCGGGSEECSCCHHHHHHHHHHC
T ss_pred CCCCHHHHHHHHHHCCEEECCCCCCCCCCCHHHHHHHHCCCEEECCCCCEEEEHHHCCCCCCEEEECCCHHHHHHHHHCC
T ss_conf 89998999998652002015899987877657789998698125674775410123058984899559899999999704
Q ss_pred CCCC---CCCCHHHHHHHHHHHCCCCCCC---CHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCHHHHH
Q ss_conf 6899---9999257999988841988999---959899998208899988633114880679999999999810998999
Q 004485 641 EDGL---FKPDPRFEEAKQFIRSGAFGSY---DYNPLLDSLEGNTGYGRGDYFLVGYDFPSYLEAQDRVDQAYKDQKKWL 714 (749)
Q Consensus 641 ~y~~---~~~~~~~~~~~~~~~~g~f~~~---~~~~i~~~l~~~~~~~~~D~~~v~~Df~~y~~~q~~v~~~Y~d~~~W~ 714 (749)
|++ |+.+|.++++++.+.+|.|+.. .|.+||++|..+ .+|+|+|++||+||++||++|..+|.|+++|.
T Consensus 691 -y~a~~~y~~~~~~~~vvd~~~~g~fs~~~~~~y~~Ly~~L~~~----~~D~~~v~~Df~~y~~~q~~v~~~Y~d~~~W~ 765 (796)
T 1l5w_A 691 -YDPVKWRKKDKVLDAVLKELESGKYSDGDKHAFDQMLHSIGKQ----GGDPYLVMADFAAYVEAQKQVDVLYRDQEAWT 765 (796)
T ss_dssp -CCHHHHHHHCHHHHHHHHHHHHTTTTTTCTTTTHHHHHHTSTT----TCCTTCHHHHHHHHHHHHHHHHHHHHSHHHHH
T ss_pred -CCHHHHHHCCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCC----CCCCEEEHHHHHHHHHHHHHHHHHHHCHHHHH
T ss_conf -3777775059999999999972998988678999999999663----89833322108999999999999720999999
Q ss_pred HHHHHHHCCCCCCCHHHHHHHHHHHHHCCCC
Q ss_conf 9999972058999968999999999724655
Q 004485 715 KMSILSTAGSGKFSSDRTIAQYAKEIWNITE 745 (749)
Q Consensus 715 ~~~~~~ia~~g~FSsdrsi~eY~~~iw~~~~ 745 (749)
+|++.|||.+|+|||||||+||+++||+++|
T Consensus 766 ~~~i~nia~~g~FssdRti~eY~~~iw~~~P 796 (796)
T 1l5w_A 766 RAAILNTARCGMFSSDRSIRDYQARIWQAKR 796 (796)
T ss_dssp HHHHHHHHHCGGGBHHHHHHHHHHHTTTSCC
T ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHCCCC
T ss_conf 9999999856915856799999999857798
No 3
>2gj4_A Glycogen phosphorylase, muscle form; transferase; HET: PLR 2TH; 1.60A {Oryctolagus cuniculus} SCOP: c.87.1.4 PDB: 2gm9_A* 1abb_A* 3nc4_A* 3l79_A* 2pyd_A* 2pyi_A* 3l7a_A* 3l7b_A* 3l7c_A* 3l7d_A* 2qnb_A* 1c8l_A* 1axr_A* 1gpy_A* 1e1y_A* 1lwo_A* 1pyg_A* 1uzu_A* 1lwn_A* 1xkx_A* ...
Probab=1.00 E-value=1 Score=1674.49 Aligned_cols=734 Identities=49% Similarity=0.837 Sum_probs=698.0
Q ss_pred CCCCCCCCHHHHHHCCCCHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHCCCCCEEEEEECCCCCCC
Q ss_conf 95348803279997069299999999972999899994010037899984000554486442169981898625688530
Q 004485 1 MEFLQGRTLTNAIGSLDIQNAYADALNNLGHVLEEIAEQEKDAALGNGGLGRLASCFLDSMATLNLPAWGYGLRYRYGLF 80 (749)
Q Consensus 1 ~Efl~Gr~l~~~l~nl~~~~~~~~~l~~~g~~~e~~~~~e~d~~lg~GGLG~LAgd~l~S~a~l~ip~~g~gL~Y~~GyF 80 (749)
|||||||+|.|||+|||++++|++||+++|++||+++++|+||+|||||||||||||||||||||+|++||||||+||||
T Consensus 76 ~Efl~gr~L~n~l~nlg~~~~~~~~l~~~g~~l~~i~~~E~d~~LgnGGLGrLAacfldS~AtL~~P~~G~Gi~Y~~G~F 155 (824)
T 2gj4_A 76 LEFYMGRTLQNTMVNLALENACDEATYQLGLDMEELEEIEEDAGLGNGGLGRLAACFLDSMATLGLAAYGYGIRYEFGIF 155 (824)
T ss_dssp SCEEEECCHHHHHHHHTCHHHHHHHHHHTTCCHHHHHTTSCCEEECCSHHHHHHHHHHHHHHHTTCCEEEEEECCSBCSC
T ss_pred HHHCCHHHHHHHHHHCCCHHHHHHHHHHHCCCHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCCCCE
T ss_conf 24302456678998778879999999980999999984478867688727787998999897579983788413068870
Q ss_pred EEEEECCCEEEECCCCCCCCCCCCCCCCCEEEEEEECCEEEECCCCCEEEECCEEEEEEEEEECCCCCCCCCEEEEEEEE
Q ss_conf 27851891543041200369984100378057999798488859993454389579999964236888887417899999
Q 004485 81 KQKITKQGQEEVAEDWLEKFSPWEVVRHDVVFPVRFFGSVMVNPNGTRKWVGGEVVQAVAYDIPIPGYKTKNTISLRLWD 160 (749)
Q Consensus 81 ~Q~i~dG~Q~e~~d~W~~~~~pw~~~~~~~~~~v~~~g~~~~~~~g~~~w~~~~~v~a~~yd~~i~g~~~~~~~~lrlw~ 160 (749)
+|+|+||||+|.||+|++.++|||++|++.+++|+|+|+++...+| .+|++.+.|.|+|||+|||||++++||++|||+
T Consensus 156 ~Q~i~dG~Q~E~~d~Wl~~~~pwe~~r~~~~~~V~f~g~v~~~~~g-~~w~~~~~v~av~yD~pi~Gy~~~~vn~lRlW~ 234 (824)
T 2gj4_A 156 NQKICGGWQMEEADDWLRYGNPWEKARPEFTLPVHFYGRVEHTSQG-AKWVDTQVVLAMPYDTPVPGYRNNVVNTMRLWS 234 (824)
T ss_dssp EEEEETTEEEEECCCTTTTCCTTCEECGGGCEEEEESCEEEECSSS-EEEESCEEEEEEEEEEEEECSSSSCEEEEEEEE
T ss_pred EEEEECCEEEECCCCCCCCCCCCCCCCCCCEEEEEECCEEEECCCC-CEECCCCEEEEEECCCCCCCCCCCCEEEEEEEE
T ss_conf 6984589888707640136996420477736899738877754899-543256148976346776787788459999999
Q ss_pred EECCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-CC-----C
Q ss_conf 64378765444458512456785345200432311479983001031110323555614999999999704-66-----4
Q 004485 161 AKASAEDFNLFQFNDGQYESAAQLHSRAQQICAVLYPGDSTEEGKLLRLKQQFFLCSASLQDMILRFKERK-SG-----R 234 (749)
Q Consensus 161 a~v~~~~~~l~~~~~~~~~~~~~~~~~~~~It~~LY~~D~~~~gk~lRl~Qe~fl~~a~l~~i~r~~~~~~-g~-----~ 234 (749)
++ +.+.|++..|+.|+|..++.....+++||++|||+|++++||++||+|||||++|++|||+|+|++.+ |. .
T Consensus 235 a~-~~~~f~~~~fn~G~~~~a~~d~~~~enIt~~LYp~D~~~~Gk~lRL~Qeyf~~sa~lqdilr~~~~~~~g~~~~~~~ 313 (824)
T 2gj4_A 235 AK-APNDFNLKDFNVGGYIQAVLDRNLAENISRVLYPNDNFFEGKELRLKQEYFVVAATLQDIIRRFKSSKFGCRDPVRT 313 (824)
T ss_dssp EE-CCC----------CHHHHHHTHHHHHGGGSBCCCCSSCCCCCHHHHHHHHHHHHHHHHHHHHHHHC-----------
T ss_pred EE-CCCCCCHHHCCCCCHHHHHHCCCCHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
T ss_conf 63-67555655326763989986356154207688999975433767632455544138999999999732364334455
Q ss_pred CCCCCCCCCEEEECCCCHHCHHHHHHHHHHHHCCCCHHHHHHHCCCEEEEEECCCCHHHHHHCCHHHHHHHCHHHHHHHH
Q ss_conf 33349998189859977011199999999985099957886501660898515880356633219999964146799999
Q 004485 235 QWSEFPSKVAVQLNDTHPTLAIPELMRLLMDEEGLGWDEAWDITTRTVAYTNHTVLPEALEKWSQAVMWKLLPRHMEIIE 314 (749)
Q Consensus 235 ~l~~l~~~~viHlND~H~al~~~ellR~l~~~~~l~~d~a~~~~~~~~vfT~HT~~~~G~e~f~~~l~~~~lp~~~~ii~ 314 (749)
+++.|++|++||||||||||++|||||.++|+++++|++||++++++|+||||||+|||+|+||.++++++||+|++||+
T Consensus 314 ~~~~~~~p~viHlNDtHpal~i~ElmR~l~d~~~l~~d~A~~i~~~~~vfT~HTl~~eglE~wp~~l~~~lLPr~~~ii~ 393 (824)
T 2gj4_A 314 NFDAFPDKVAIQLNDTHPSLAIPELMRVLVDLERLDWDKAWEVTVKTCAYTNHTVLPEALERWPVHLLETLLPRHLQIIY 393 (824)
T ss_dssp CGGGHHHHEEEEEESSTTTTHHHHHHHHHHHTSCCCHHHHHHHHHHHEEEECCCCCGGGSCEEEHHHHHHHCHHHHHHHH
T ss_pred CHHHCCCCCEEECCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCEEEEECCCHHHHHHHCHHHHHHHHCCHHHHHHH
T ss_conf 42115777679716984186999999998775178878999983675899837975888654549999986755989999
Q ss_pred HHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHCHHHHCCCCCHHHHHHHHHHHHHHHHCCHHHHCCCCCCCCC
Q ss_conf 99999999999746998110011353247999983113011122056302224575999875210270000578865312
Q 004485 315 EIDKRFIAMVRSTRSDLESKIPSMCILDNNPKKPVVRMANLCVVSAHTVNGVAQLHSDILKADLFADYVSLWPNKLQNKT 394 (749)
Q Consensus 315 ~in~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~vnm~~lai~~S~~vNgVS~lh~ei~~~~~~~~~~~l~p~ki~~It 394 (749)
+||.+|+..+...++.+.+.+.+++++++. +.++|||+++||++|++|||||++|++++++++|++|+..+|++|.|||
T Consensus 394 ~in~~f~~~~~~~~~~~~~~~~~~~~i~~~-~~~~vnMa~lai~~S~~VNgVS~lH~e~ik~~~f~~~~~~~p~k~~~iT 472 (824)
T 2gj4_A 394 EINQRFLNRVAAAFPGDVDRLRRMSLVEEG-AVKRINMAHLCIAGSHAVNGVARIHSEILKKTIFKDFYELEPHKFQNKT 472 (824)
T ss_dssp HHHHHHHHHHHHHSTTCHHHHHHHCSEECS-SSCEEEHHHHHHHTCSCEEESSHHHHHHHHHTTTHHHHHHCGGGEEECC
T ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHHHHHC-CCCCCCHHHHHHHHCCCEEEECHHHHHHHHHHHHHHHHHCCHHHCCCCC
T ss_conf 987999999998769958999766554405-7883428999998348434574889999855776788870701202453
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCE
Q ss_conf 47785454566791235899852286300147015764200489978999999999999999999999994997899970
Q 004485 395 NGITPRRWLRFCNPELSKIITKWLKTDQWVTNLDLLVGLRQFADNTELQAEWESAKMASKKHLADYIWRVTGVTIDPNSL 474 (749)
Q Consensus 395 NGI~~~~W~~~~np~~~~li~~~~~~~~w~~~~~~l~~l~~~~~d~~~~~~~~~~K~~nK~~L~~~i~~~~g~~~~~~~~ 474 (749)
||||+++|+.+|||+++++|++++| ++|.+|++.+++|.++.+|++|+++|+++|++||++|++++++++|+.+||++|
T Consensus 473 NGI~~rrWl~~~NP~l~~lI~~~ig-~~W~~~~~~l~~L~~y~~d~~~~~~~~~~K~~nK~~la~~l~~~~Gl~vdpd~l 551 (824)
T 2gj4_A 473 NGITPRRWLVLCNPGLAEIIAERIG-EEYISDLDQLRKLLSYVDDEAFIRDVAKVKQENKLKFAAYLEREYKVHINPNSL 551 (824)
T ss_dssp CCBCTCCCCCCTCHHHHHHHHHHHC-SGGGGCGGGGGGGGGGTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCTTSE
T ss_pred CCCCHHHHCCCCCHHHHHHHHHHCC-CHHHHCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
T ss_conf 7827566401479768898988557-153208788998885166189999999999997899899999996998689955
Q ss_pred EEEECCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCC
Q ss_conf 68673553100000000256799999976119223379999599997228958987899999999987653399588993
Q 004485 475 FDIQVKRIHEYKRQLLNILGAIYRYKKLKEMSPQERKKTTPRTIMIGGKAFATYTNAKRIVKLVNDVGEVVNTDPEVNSY 554 (749)
Q Consensus 475 ~~~~vrR~~eyKR~~Lnil~~i~~~~~i~~~~~~~~~~~~p~q~If~GKa~P~y~~~K~iIk~I~~la~~in~d~~~~~~ 554 (749)
||+||||||+||||+||+++++++|.+|+. +|. .+.+|+||||+|||||+|++||+|||+|+++++++|+||+++++
T Consensus 552 ~~g~vkRl~eYKRq~L~~l~~i~~~~~i~~-~~~--~~~~p~q~If~GKA~P~y~~aK~iIkli~~va~~in~Dp~v~~~ 628 (824)
T 2gj4_A 552 FDVQVKRIHEYKRQLLNCLHVITLYNRIKK-EPN--KFVVPRTVMIGGKAAPGYHMAKMIIKLITAIGDVVNHDPVVGDR 628 (824)
T ss_dssp EEEEESCCCGGGTHHHHHHHHHHHHHHHHH-CTT--SCCCCEEEEEECCCCTTCHHHHHHHHHHHHHHHHHTTCTTTGGG
T ss_pred EEEEEECCHHHCCHHHHHHHHHHHHHHHHH-CCC--CCCCCEEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
T ss_conf 676662032413430688879999999982-888--88899799999707775798899999999999986258455996
Q ss_pred CEEEEECCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCEEEEECCCHHHHHHHHHCCCCEEEECCCCCCCH
Q ss_conf 35999838897789732357631123687775678821136761384264405762589999834852776157543004
Q 004485 555 LKVVFVPNYNVSVAELLIPGSELSQHISTAGMEASGTSNMKFSLNGCLIIGTLDGANVEIRQEIGEENFFLFGAVAEQVP 634 (749)
Q Consensus 555 lkVvFlenY~v~lA~~l~~g~Di~l~~s~~~~EAsGTs~Mkam~NG~l~istlDG~~vE~~~~~Gg~n~~~fG~~~d~v~ 634 (749)
|||+|+||||+++||+|+||||+|||||+||+|||||||||||+||+|||||+||||||+.+++|++|||+||..++++.
T Consensus 629 lKVvFl~nYdvslA~~I~~gaDv~l~~S~ag~EAsGTs~MKamlNGaLtigtlDGanvEi~e~vG~~Ngf~FG~~~~ev~ 708 (824)
T 2gj4_A 629 LRVIFLENYRVSLAEKVIPAADLSEQISTAGTEASGTGNMKFMLNGALTIGTMDGANVEMAEEAGEENFFIFGMRVEDVD 708 (824)
T ss_dssp EEEEEETTCCHHHHHHHGGGCSEEEECCCTTSCSCCSHHHHHHHTTCEEEECSCTTHHHHHHHHCGGGSEECSCCHHHHH
T ss_pred EEEEEECCCCHHHHHHHHHHCCEEECCCCCCCCCCCHHHHHHHHCCCEEEEEECCCCCHHHHCCCCCCEEEECCCHHHHH
T ss_conf 07999789998999998641223125899987877657789998696499984685621231058887799378589999
Q ss_pred HHHHHCCCCC---CCCCHHHHHHHHHHHCCCCCCC---CHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 3552016899---9999257999988841988999---959899998208899988633114880679999999999810
Q 004485 635 KLRKEREDGL---FKPDPRFEEAKQFIRSGAFGSY---DYNPLLDSLEGNTGYGRGDYFLVGYDFPSYLEAQDRVDQAYK 708 (749)
Q Consensus 635 ~~~~~~~y~~---~~~~~~~~~~~~~~~~g~f~~~---~~~~i~~~l~~~~~~~~~D~~~v~~Df~~y~~~q~~v~~~Y~ 708 (749)
.++..+ |++ |+.+|.++++++.+.+|.|+.. .|.+||++|.. +|+|||++||+||++||+++...|.
T Consensus 709 ~l~~~~-~~a~~~Y~~~~~l~~v~d~i~~g~fs~~~~~~y~~ly~~l~~------~D~~~~~~Df~~y~~~q~~v~~~y~ 781 (824)
T 2gj4_A 709 RLDQRG-YNAQEYYDRIPELRQIIEQLSSGFFSPKQPDLFKDIVNMLMH------HDRFKVFADYEEYVKCQERVSALYK 781 (824)
T ss_dssp HHHHHC-CCHHHHHHHCHHHHHHHHHHHHTTTCTTSTTTTHHHHHHHHH------CCTTCTGGGHHHHHHHHHHHHHHHT
T ss_pred HHHHCC-CCHHHHHCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHC------CCHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 999758-797888537999999999997288899984889999999872------7825666208999999999987514
Q ss_pred CHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCCC
Q ss_conf 9989999999972058999968999999999724655458
Q 004485 709 DQKKWLKMSILSTAGSGKFSSDRTIAQYAKEIWNITECRT 748 (749)
Q Consensus 709 d~~~W~~~~~~~ia~~g~FSsdrsi~eY~~~iw~~~~~~~ 748 (749)
|+++|.+||+.|||.+|+|||||||+||+++||+++|++.
T Consensus 782 d~~~W~~~~~~nia~~g~FssdRtI~eY~~~iw~~~~~~~ 821 (824)
T 2gj4_A 782 NPREWTRMVIRNIATSGKFSSDRTIAQYAREIWGVEPSRQ 821 (824)
T ss_dssp CHHHHHHHHHHHHTTCGGGBHHHHHHHHHHHTTCCCCCCC
T ss_pred CHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCC
T ss_conf 9899999999999972874827899999999748787788
No 4
>2c4m_A Glycogen phosphorylase; allosteric control, phosphate dependence, starch degrading, transferase, glycosyltransferase; HET: PLP; 1.9A {Corynebacterium callunae}
Probab=1.00 E-value=1 Score=1651.40 Aligned_cols=720 Identities=46% Similarity=0.761 Sum_probs=684.2
Q ss_pred CCCCCCCCHHHHHHCCCCHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHCCCCCEEEEEECCCCCCC
Q ss_conf 95348803279997069299999999972999899994010037899984000554486442169981898625688530
Q 004485 1 MEFLQGRTLTNAIGSLDIQNAYADALNNLGHVLEEIAEQEKDAALGNGGLGRLASCFLDSMATLNLPAWGYGLRYRYGLF 80 (749)
Q Consensus 1 ~Efl~Gr~l~~~l~nl~~~~~~~~~l~~~g~~~e~~~~~e~d~~lg~GGLG~LAgd~l~S~a~l~ip~~g~gL~Y~~GyF 80 (749)
|||||||+|.|||+|||++++|+++|+++|++|++++++|+||+|||||||||||||||||||||+|++||||||+||||
T Consensus 67 ~Efl~gr~L~n~l~nlg~~~~~~~~l~~~g~~l~~~~~~E~d~~LgnGGLGrLAac~ldS~a~l~~p~~G~Gl~Y~~G~F 146 (796)
T 2c4m_A 67 AEFLMGRALLNNLTNLGLVDEAAAATRELGHELTDILEIENDAALGNGGLGRLAACFLDSAVTQDYPVTGYGLLYRFGLF 146 (796)
T ss_dssp SCCCCBCSHHHHHHHTTCHHHHHHHHHHTTCCHHHHHTTCCCBCCCCSHHHHHHHHHHHHHHHTTCCEEEEEECCSSCSC
T ss_pred HHHCCHHHHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCCCCE
T ss_conf 13215055666887555479999999980999899986455666578708888999999997579986898624158871
Q ss_pred EEEEECCCEEEECCCCCCCCCCCCCCCCCEEEEEEECCEEEECCCCCEEEECCEEEEEEEEEECCCCCCCCCEEEEEEEE
Q ss_conf 27851891543041200369984100378057999798488859993454389579999964236888887417899999
Q 004485 81 KQKITKQGQEEVAEDWLEKFSPWEVVRHDVVFPVRFFGSVMVNPNGTRKWVGGEVVQAVAYDIPIPGYKTKNTISLRLWD 160 (749)
Q Consensus 81 ~Q~i~dG~Q~e~~d~W~~~~~pw~~~~~~~~~~v~~~g~~~~~~~g~~~w~~~~~v~a~~yd~~i~g~~~~~~~~lrlw~ 160 (749)
+|+|.||||+|.||+|++.++|||++|++.+++|+|+|+ .|.|||||+|||||+++++|+||||+
T Consensus 147 ~Q~i~dG~Q~E~~d~wl~~g~pwe~~r~~~~~~V~f~g~---------------~v~a~~yd~pi~gy~~~~~n~lrlW~ 211 (796)
T 2c4m_A 147 RQSFNEGFQVEKPDPWREEEYPFTIRRASDQLVVCFDDM---------------KTRAIPYDMPITGYGTHNVGTLRLWK 211 (796)
T ss_dssp EEEEETTEEEEECCCSSSSCCTTSEECGGGCEEEEETTE---------------EEEEEEEEEEECCTTCCCCEEEEEEE
T ss_pred EEEEECCEEEEECCCCCCCCCCEEEECCCCEEEEEECCE---------------EEEEEEEECCCCCCCCCCEEEEEEEE
T ss_conf 798258978861776545799604764772789974998---------------99999972465676777358999886
Q ss_pred EECCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC
Q ss_conf 64378765444458512456785345200432311479983001031110323555614999999999704664333499
Q 004485 161 AKASAEDFNLFQFNDGQYESAAQLHSRAQQICAVLYPGDSTEEGKLLRLKQQFFLCSASLQDMILRFKERKSGRQWSEFP 240 (749)
Q Consensus 161 a~v~~~~~~l~~~~~~~~~~~~~~~~~~~~It~~LY~~D~~~~gk~lRl~Qe~fl~~a~l~~i~r~~~~~~g~~~l~~l~ 240 (749)
+++++ .|+|..|+.|+|.+++++.+.+|+||++|||+|++++||++||+||||||+|++|+|+|++++.++ +++.|+
T Consensus 212 a~~~~-~f~l~~fn~gdy~~a~~~~~~~~~It~~LYp~D~~~~Gk~lRL~Qe~ff~~a~lq~ilr~~~~~~~--~l~~l~ 288 (796)
T 2c4m_A 212 AEPWE-EFDYDAFNAQRFTDAIIERERVSDICRVLYPNDTTYEGKKLRVRQQYFFTSASLQAMIQDHLAHHK--DLSNFA 288 (796)
T ss_dssp EEESS-SSCHHHHHTTCHHHHHHHHHHHHHHHHSSSCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSS--CSTTHH
T ss_pred CCCCC-CCCHHHCCCCCHHHHHHCHHHHHCHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCC--CHHHCC
T ss_conf 05663-246543267656565446275616543376999985409889975999999999999999987088--734459
Q ss_pred CCCEEEECCCCHHCHHHHHHHHHHHHCCCCHHHHHHHCCCEEEEEECCCCHHHHHHCCHHHHHHHCHHHHHHHHHHHHHH
Q ss_conf 98189859977011199999999985099957886501660898515880356633219999964146799999999999
Q 004485 241 SKVAVQLNDTHPTLAIPELMRLLMDEEGLGWDEAWDITTRTVAYTNHTVLPEALEKWSQAVMWKLLPRHMEIIEEIDKRF 320 (749)
Q Consensus 241 ~~~viHlND~H~al~~~ellR~l~~~~~l~~d~a~~~~~~~~vfT~HT~~~~G~e~f~~~l~~~~lp~~~~ii~~in~~~ 320 (749)
+|++||||||||||++|||||.++|+++++|++||++++.+|+||||||+|||+|+||.++++++||++++||++||.+|
T Consensus 289 ~p~viHlNDtHpal~i~ElmR~l~d~~~~~~d~A~~i~~~~~vyT~HTl~~egle~wp~~l~~~~lpr~~~ii~~I~~~~ 368 (796)
T 2c4m_A 289 EFHSVQLNDTHPVLAIPELMRLLMDEHDMGWEESWAIVSKTFAYTNHTVLTEALEQWDEQIFQQLFWRVWEIIAEIDRRF 368 (796)
T ss_dssp HHEEEEEESSTTTTHHHHHHHHHHHHSCCCHHHHHHHHHHHEEEECCCSSSTTSCEEEHHHHHHHCHHHHHHHHHHHHHH
T ss_pred CCEEEEECCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCEEEEECCCHHHHHHHCCHHHHHHHHHHHHHHHCCCCHHH
T ss_conf 97089938971776899999997454179878999986021788856863777641799999987579888870768999
Q ss_pred HHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHCHHHHCCCCCHHHHHHHHHHHHHHHHCCHHHHCCCCCCCCCCCCCCC
Q ss_conf 99999746998110011353247999983113011122056302224575999875210270000578865312477854
Q 004485 321 IAMVRSTRSDLESKIPSMCILDNNPKKPVVRMANLCVVSAHTVNGVAQLHSDILKADLFADYVSLWPNKLQNKTNGITPR 400 (749)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~e~~~~~~~vnm~~lai~~S~~vNgVS~lh~ei~~~~~~~~~~~l~p~ki~~ItNGI~~~ 400 (749)
+..+... +.+++++.+++++++ ++|||+++||++|++|||||++|++++++++|++|+.++|.||.|||||||++
T Consensus 369 ~~~~~~~-~~~~~~~~~~~i~~~----~~vnMa~lai~~S~~VNgVS~lHae~ik~~~f~~~~~~~p~kf~~iTNGI~~r 443 (796)
T 2c4m_A 369 RLERAAD-GLDEETINRMAPIQH----GTVHMAWIACYAAYSINGVAALHTEIIKAETLADWYALWPEKFNNKTNGVTPR 443 (796)
T ss_dssp HHHHHHT-TCCHHHHHHHCSEET----TEEEHHHHHHHHCSEEEESSHHHHHHHHHTTTHHHHHHCGGGEEECCCCBCTC
T ss_pred HHHHHHC-CCCHHHHHCCCCEEC----CCCCHHHHHHHHCCCEEECCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHH
T ss_conf 9999845-782766532541248----81169999998428321023877888613666669872864006561884667
Q ss_pred CCCCCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECC
Q ss_conf 54566791235899852286300147015764200489978999999999999999999999994997899970686735
Q 004485 401 RWLRFCNPELSKIITKWLKTDQWVTNLDLLVGLRQFADNTELQAEWESAKMASKKHLADYIWRVTGVTIDPNSLFDIQVK 480 (749)
Q Consensus 401 ~W~~~~np~~~~li~~~~~~~~w~~~~~~l~~l~~~~~d~~~~~~~~~~K~~nK~~L~~~i~~~~g~~~~~~~~~~~~vr 480 (749)
+|+.+|||+++++|++++++++|.+|++.|++|.++++|++|+++|+++|++||++|+++|++++|+.+||++|||+|||
T Consensus 444 rWl~~~NP~l~~li~~~~g~~~w~~d~~~l~~l~~~~~d~~~~~~l~~~K~~nK~~L~~~l~~~~Gl~vdpd~l~~~~vk 523 (796)
T 2c4m_A 444 RWLRMINPGLSDLLTRLSGSDDWVTDLDELKKLRSYADDKSVLEELRAIKAANKQDFAEWILERQGIEIDPESIFDVQIK 523 (796)
T ss_dssp CCCCTTCHHHHHHHHHHHSSSGGGGCGGGGGGGGGGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCTTSEEEEEEC
T ss_pred HHHCCCCHHHHHHHHHHCCCHHHHHCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEE
T ss_conf 75003597588999986692122118699999886199889999999999999999999999985998799976777764
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEE
Q ss_conf 53100000000256799999976119223379999599997228958987899999999987653399588993359998
Q 004485 481 RIHEYKRQLLNILGAIYRYKKLKEMSPQERKKTTPRTIMIGGKAFATYTNAKRIVKLVNDVGEVVNTDPEVNSYLKVVFV 560 (749)
Q Consensus 481 R~~eyKR~~Lnil~~i~~~~~i~~~~~~~~~~~~p~q~If~GKa~P~y~~~K~iIk~I~~la~~in~d~~~~~~lkVvFl 560 (749)
|||+||||+||+++++++|.+|++ +|.. +.+|+||||+|||||+|++||+|||+|++++++||+||+++++|||+|+
T Consensus 524 RlheYKRq~Lnil~ii~~~~~i~~-~~~~--~~~p~q~If~GKA~P~y~~aK~iIk~i~~va~~in~dp~~~~~lKVvFl 600 (796)
T 2c4m_A 524 RLHEYKRQLMNALYVLDLYFRIKE-DGLT--DIPARTVIFGAKAAPGYVRAKAIIKLINSIADLVNNDPEVSPLLKVVFV 600 (796)
T ss_dssp CCCGGGTHHHHHHHHHHHHHHHHT-SCCC--SSCCEEEEEECCCCTTCHHHHHHHHHHHHHHHHHHTCTTTTTTEEEEEE
T ss_pred CCHHHCCCCEEHHHHHHHHHHHHH-CCCC--CCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEE
T ss_conf 042530568829999999999860-8877--7899499999628776798899999999999874246014996079997
Q ss_pred CCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCEEEEECCCHHHHHHHHHCCCCEEEECCCCCCCHHHHHHC
Q ss_conf 38897789732357631123687775678821136761384264405762589999834852776157543004355201
Q 004485 561 PNYNVSVAELLIPGSELSQHISTAGMEASGTSNMKFSLNGCLIIGTLDGANVEIRQEIGEENFFLFGAVAEQVPKLRKER 640 (749)
Q Consensus 561 enY~v~lA~~l~~g~Di~l~~s~~~~EAsGTs~Mkam~NG~l~istlDG~~vE~~~~~Gg~n~~~fG~~~d~v~~~~~~~ 640 (749)
|||||++||+|+||||+|||||+||+|||||||||||+||+||||||||||+|+.+++|++|||+||.++++|.+++..
T Consensus 601 ~nY~vslA~~I~~gaDv~l~~S~a~~EAsGTs~MKam~NGaL~iGtLDGanvEi~e~vG~~NgF~FG~~~~ev~~l~~~- 679 (796)
T 2c4m_A 601 ENYNVSPAEHILPASDVSEQISTAGKEASGTSNMKFMMNGALTLGTMDGANVEIVDSVGEENAYIFGARVEELPALRES- 679 (796)
T ss_dssp TTCCHHHHHHHGGGCSEEEECCCTTSCSCCHHHHHHHHTTCEEEEESSTHHHHHHHHHCGGGSEEESCCTTTHHHHHHT-
T ss_pred CCCCHHHHHHHHHHCCEEECCCCCCCCCCCHHHHHHHHCCCEEEECCCCEEEEHHHHCCCCCEEEECCCHHHHHHHHHH-
T ss_conf 9999899999864122402589998788760778999769747704577686502216977479956845429999973-
Q ss_pred CCCC---CCCCHHHHHHHHHHHCCCCCCCC---HHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHH-HCHHHH
Q ss_conf 6899---99992579999888419889999---5989999820889998863311488067999999999981-099899
Q 004485 641 EDGL---FKPDPRFEEAKQFIRSGAFGSYD---YNPLLDSLEGNTGYGRGDYFLVGYDFPSYLEAQDRVDQAY-KDQKKW 713 (749)
Q Consensus 641 ~y~~---~~~~~~~~~~~~~~~~g~f~~~~---~~~i~~~l~~~~~~~~~D~~~v~~Df~~y~~~q~~v~~~Y-~d~~~W 713 (749)
|++ |+.+|.++++++.+.+|.|+..+ |.+||++|....+.+.+|+|||++||+||++||++|.+.| .|+++|
T Consensus 680 -y~a~~~y~~~~~~~~vvd~~~~g~fs~~~~~~y~~Ly~~L~~~~~~~~~D~~~~~~Df~~y~~~q~~v~~~y~~d~~~W 758 (796)
T 2c4m_A 680 -YKPYELYETVPGLKRALDALDNGTLNDNNSGLFYDLKHSLIHGYGKDASDTYYVLGDFADYRETRDRMAADYASDPLGW 758 (796)
T ss_dssp -CCHHHHHHHSTTHHHHHHTTTSSSSCCTTCCHHHHHHHHHHSCCGGGCSCTTCHHHHHHHHHHHHHHHHHHHHHCHHHH
T ss_pred -HCHHHHHHCCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCHHHH
T ss_conf -1848776159989999999971988998779999999999701467789833203018999999999999998789999
Q ss_pred HHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCCC
Q ss_conf 99999972058999968999999999724655458
Q 004485 714 LKMSILSTAGSGKFSSDRTIAQYAKEIWNITECRT 748 (749)
Q Consensus 714 ~~~~~~~ia~~g~FSsdrsi~eY~~~iw~~~~~~~ 748 (749)
.+|++.|||.+|+|||||||+||+++||+++|++.
T Consensus 759 ~~~~i~nia~~g~FssdRti~eY~~~iw~~~~~~~ 793 (796)
T 2c4m_A 759 ARMAWINICESGRFSSDRTIRDYATEIWKLEPTPA 793 (796)
T ss_dssp HHHHHHHHHHGGGGBHHHHHHHHHHHTTCCCCCCC
T ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCC
T ss_conf 99999999855805866899999999758787784
No 5
>3vue_A GBSS-I, granule-bound starch synthase 1, chloroplastic/amyloplastic; rossmann fold, glycosyltransferase, transferase; 2.70A {Oryza sativa japonica group} PDB: 3vuf_A*
Probab=1.00 E-value=1 Score=385.15 Aligned_cols=485 Identities=16% Similarity=0.169 Sum_probs=333.9
Q ss_pred HHCCCCCCCCCCCCHHHHHHHHHCCCCCEEEEEECCCCCCCEEEEECCCEEEECCCCCCCCCCCCCCCCCEEEEEEECCE
Q ss_conf 10037899984000554486442169981898625688530278518915430412003699841003780579997984
Q 004485 40 EKDAALGNGGLGRLASCFLDSMATLNLPAWGYGLRYRYGLFKQKITKQGQEEVAEDWLEKFSPWEVVRHDVVFPVRFFGS 119 (749)
Q Consensus 40 e~d~~lg~GGLG~LAgd~l~S~a~l~ip~~g~gL~Y~~GyF~Q~i~dG~Q~e~~d~W~~~~~pw~~~~~~~~~~v~~~g~ 119 (749)
|.-|-.=.||||.-++..-++++.+|.-+.-+.-.|.. +.+.+... ....+.+.++
T Consensus 18 E~~P~~K~GGLadvv~~L~~aL~~~G~~V~Vi~P~Y~~------~~~~~~~~------------------~~~~~~~~~~ 73 (536)
T 3vue_A 18 EMAPWSKTGGLGDVLGGLPPAMAANGHRVMVISPRYDQ------YKDAWDTS------------------VVAEIKVADR 73 (536)
T ss_dssp CBTTTBCSSHHHHHHHHHHHHHHTTTCEEEEEEECCSC------CTTCEEEE------------------EEEEEEETTE
T ss_pred ECCCHHCCCCHHHHHHHHHHHHHHCCCEEEEEECCCHH------HHHHCCCC------------------EEEEEEECCC
T ss_conf 24312126769999999999999769969999048502------22422651------------------6899983683
Q ss_pred EEECCCCCEEEECCEEEEEEEEEECCCCCCCCCEEEEEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCC
Q ss_conf 88859993454389579999964236888887417899999643787654444585124567853452004323114799
Q 004485 120 VMVNPNGTRKWVGGEVVQAVAYDIPIPGYKTKNTISLRLWDAKASAEDFNLFQFNDGQYESAAQLHSRAQQICAVLYPGD 199 (749)
Q Consensus 120 ~~~~~~g~~~w~~~~~v~a~~yd~~i~g~~~~~~~~lrlw~a~v~~~~~~l~~~~~~~~~~~~~~~~~~~~It~~LY~~D 199 (749)
....++|... .+++++|+++++.|+... ...-...+|+++
T Consensus 74 ---------------------------------~~~~~~~~~~--~~gv~~y~id~~~~~~r~-----~~~~~~~~Y~~~ 113 (536)
T 3vue_A 74 ---------------------------------YERVRFFHCY--KRGVDRVFIDHPSFLEKV-----WGKTGEKIYGPD 113 (536)
T ss_dssp ---------------------------------EEEEEEEECE--ETTEEEEEEECTTTTCC------------------
T ss_pred ---------------------------------EEEEEEEEEE--ECCCEEEEECCHHHHCCC-----CCCCCCCCCCCC
T ss_conf ---------------------------------3789999999--789559996475541233-----466778666887
Q ss_pred C--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC-CCCCCEEEECCCCHHCHHHHHHHHHHHHCCCCHHHHHH
Q ss_conf 8--30010311103235556149999999997046643334-99981898599770111999999999850999578865
Q 004485 200 S--TEEGKLLRLKQQFFLCSASLQDMILRFKERKSGRQWSE-FPSKVAVQLNDTHPTLAIPELMRLLMDEEGLGWDEAWD 276 (749)
Q Consensus 200 ~--~~~gk~lRl~Qe~fl~~a~l~~i~r~~~~~~g~~~l~~-l~~~~viHlND~H~al~~~ellR~l~~~~~l~~d~a~~ 276 (749)
+ ++.. -..++.||+.++++.+ +.+ ..+....+.. .+.++++||||||+|++ |.+++......+ .
T Consensus 114 ~~~~~~d---~~~rf~~f~~a~l~~~-~~l-~~~~~~~~~~~~~~ddIiH~hDW~t~l~-~~~l~~~~~~~~-------~ 180 (536)
T 3vue_A 114 TGVDYKD---NQMRFSLLCQAALEAP-RIL-NLNNNPYFKGTYGEDVVFVCNDWHTGPL-ASYLKNNYQPNG-------I 180 (536)
T ss_dssp -----CH---HHHHHHHHHHHHHHHH-HHC-CCCCCTTCCSCCCSCEEEEEESGGGSTH-HHHHHHHTTTTT-------S
T ss_pred CCCCCCH---HHHHHHHHHHHHHHHH-HHH-CCCCCHHHHCCCCCCEEEEECCCHHHHH-HHHHHHHHHHHH-------H
T ss_conf 5676641---7999999999999999-973-0265301101479987999776048999-999998640233-------2
Q ss_pred HCCCEEEEEECCCCHHHHHHCCHHHHHHH-CHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHCH
Q ss_conf 01660898515880356633219999964-14679999999999999999746998110011353247999983113011
Q 004485 277 ITTRTVAYTNHTVLPEALEKWSQAVMWKL-LPRHMEIIEEIDKRFIAMVRSTRSDLESKIPSMCILDNNPKKPVVRMANL 355 (749)
Q Consensus 277 ~~~~~~vfT~HT~~~~G~e~f~~~l~~~~-lp~~~~ii~~in~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~vnm~~l 355 (749)
.....+|||+||+.+||+ |+.+.+... ++... . . ..+.+....... ..+.+|+++.
T Consensus 181 ~~~~~~V~TiHnl~~qg~--~~~~~~~~~~~~~~~----------~-~-------~~~~~~~~~~~~---~~~~~n~~k~ 237 (536)
T 3vue_A 181 YRNAKVAFCIHNISYQGR--FAFEDYPELNLSERF----------R-S-------SFDFIDGYDTPV---EGRKINWMKA 237 (536)
T ss_dssp STTCEEEEEESCTTCCCE--EEGGGGGGGCCCGGG----------H-H-------HHEEEETTTSTT---CEEEEEHHHH
T ss_pred HCCCCEEEEECCCCCCCC--CCHHHHHHCCCCHHH----------C-C-------HHHHHHCCCCCC---CCCCHHHHHH
T ss_conf 025634542157422455--553336441896564----------0-1-------033331146410---0330439999
Q ss_pred HHHCCCCCHHHHHHHHHHHHHHHHC-CH--HHH-CCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCHHHHH
Q ss_conf 1220563022245759998752102-70--000-5788653124778545456679123589985228630014701576
Q 004485 356 CVVSAHTVNGVAQLHSDILKADLFA-DY--VSL-WPNKLQNKTNGITPRRWLRFCNPELSKIITKWLKTDQWVTNLDLLV 431 (749)
Q Consensus 356 ai~~S~~vNgVS~lh~ei~~~~~~~-~~--~~l-~p~ki~~ItNGI~~~~W~~~~np~~~~li~~~~~~~~w~~~~~~l~ 431 (749)
++..|++|+|||+.|++++.+. ++ ++ ... .+.++.+|.||||+..| ||..+..+..++.
T Consensus 238 ~i~~ad~v~tVS~~~a~ei~~~-~~~g~~l~~~~~~~~i~~I~NGiD~~~~----~p~~d~~~~~~~~------------ 300 (536)
T 3vue_A 238 GILEADRVLTVSPYYAEELISG-IARGCELDNIMRLTGITGIVNGMDVSEW----DPSKDKYITAKYD------------ 300 (536)
T ss_dssp HHHHCSEEEESCHHHHHHHHTT-CCCCSSSCCCSCCCSCEECCCCCCTTTS----CTTTCSSSSCCCC------------
T ss_pred HHHHCCEEEECCHHHHHHHHCC-CCCCCCCCCCCCCCCEEEEECCCCHHHC----CCCCCCCCCCCCC------------
T ss_conf 9985367787687885343126-3445220012545781899799664214----8877621001444------------
Q ss_pred HHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCC
Q ss_conf 42004899789999999999999999999999949978999706867355310000000025679999997611922337
Q 004485 432 GLRQFADNTELQAEWESAKMASKKHLADYIWRVTGVTIDPNSLFDIQVKRIHEYKRQLLNILGAIYRYKKLKEMSPQERK 511 (749)
Q Consensus 432 ~l~~~~~d~~~~~~~~~~K~~nK~~L~~~i~~~~g~~~~~~~~~~~~vrR~~eyKR~~Lnil~~i~~~~~i~~~~~~~~~ 511 (749)
..+. + +.|..||..|.. ++|+..+++.|++++|+|++++|+.++ ++..+.++.+
T Consensus 301 -----~~~~-----~-~~K~~~k~~l~~----~~gl~~d~~~p~i~~vgRl~~~Kg~~~-li~a~~~l~~---------- 354 (536)
T 3vue_A 301 -----ATTA-----I-EAKALNKEALQA----EAGLPVDRKIPLIAFIGRLEEQKGPDV-MAAAIPELMQ---------- 354 (536)
T ss_dssp -----TTTH-----H-HHHHHHHHHHHH----HTTSCCCTTSCEEEEECCBSGGGCHHH-HHHHHHHHTT----------
T ss_pred -----HHHH-----H-HHHHHHHHHHHH----HCCCCCCCCCCEEEEEEECCCCCCHHH-HHHHHHHHHH----------
T ss_conf -----3455-----5-656777999998----619987999758999965302378478-9999997685----------
Q ss_pred CCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCHHHHHHHCCCCCCCCCCCCCCCCCCCC
Q ss_conf 99995999972289589878999999999876533995889933599983889778973235763112368777567882
Q 004485 512 KTTPRTIMIGGKAFATYTNAKRIVKLVNDVGEVVNTDPEVNSYLKVVFVPNYNVSVAELLIPGSELSQHISTAGMEASGT 591 (749)
Q Consensus 512 ~~~p~q~If~GKa~P~y~~~K~iIk~I~~la~~in~d~~~~~~lkVvFlenY~v~lA~~l~~g~Di~l~~s~~~~EAsGT 591 (749)
...++++.|.+.+.++.. +...+.. .++ +|.|...++.+..+.++++||++++||+ +|+||+
T Consensus 355 --~~~~l~l~G~G~~~~~~~------~~~~~~~------~~~--~v~~~~~~~~~~~~~~~~~aD~~v~PS~--~E~fgl 416 (536)
T 3vue_A 355 --EDVQIVLLGTGKKKFEKL------LKSMEEK------YPG--KVRAVVKFNAPLAHLIMAGADVLAVPSR--FEPCGL 416 (536)
T ss_dssp --SSCEEEEECCBCHHHHHH------HHHHHHH------STT--TEEEECSCCHHHHHHHHHHCSEEEECCS--CCSSCS
T ss_pred --HCCEEEEEECCCCHHHHH------HHHHHHH------CCC--CEEEEEECCHHHHHHHHHHHHEEECCCC--CCCCCH
T ss_conf --498599995467268999------9998761------688--5499971468889999986234253465--689888
Q ss_pred CHHHHHHCCCEEEEECCCHHHHHHHHHCCCCEEEECCCCCCCHHHHHHCCCCCCCCCHHHHHHHHHHHCC-CCCCCCHHH
Q ss_conf 1136761384264405762589999834852776157543004355201689999992579999888419-889999598
Q 004485 592 SNMKFSLNGCLIIGTLDGANVEIRQEIGEENFFLFGAVAEQVPKLRKEREDGLFKPDPRFEEAKQFIRSG-AFGSYDYNP 670 (749)
Q Consensus 592 s~Mkam~NG~l~istlDG~~vE~~~~~Gg~n~~~fG~~~d~v~~~~~~~~y~~~~~~~~~~~~~~~~~~g-~f~~~~~~~ 670 (749)
+.|-||..|+++|++.-|...|++.+ |+|||.|+.... +| .|.+.+.++
T Consensus 417 ~~lEAma~G~PvI~s~~gG~~e~V~d--g~~G~~~~~~~~----------------------------~g~l~~~~d~~~ 466 (536)
T 3vue_A 417 IQLQGMRYGTPCACASTGGLVDTVIE--GKTGFHMGRLSV----------------------------DCKVVEPSDVKK 466 (536)
T ss_dssp HHHHHHHTTCCEEECSCTHHHHHCCB--TTTEEECCCCCS----------------------------CTTCCCHHHHHH
T ss_pred HHHHHHHCCCCEEECCCCCCHHEEEC--CCCCCCCCCCCC----------------------------CEEEECCCCHHH
T ss_conf 99999986998999079982220227--987632466777----------------------------515879999999
Q ss_pred HHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCC
Q ss_conf 9999820889998863311488067999999999981099899999999720589999689999999997246
Q 004485 671 LLDSLEGNTGYGRGDYFLVGYDFPSYLEAQDRVDQAYKDQKKWLKMSILSTAGSGKFSSDRTIAQYAKEIWNI 743 (749)
Q Consensus 671 i~~~l~~~~~~~~~D~~~v~~Df~~y~~~q~~v~~~Y~d~~~W~~~~~~~ia~~g~FSsdrsi~eY~~~iw~~ 743 (749)
|..+|. +++..|.++ .|.++++++|++ +|||++++++|.+-.-.+
T Consensus 467 la~ai~-------------------------ral~~~~~~-~~~~~~~~am~~--~fSW~~~A~~y~~ly~~L 511 (536)
T 3vue_A 467 VAATLK-------------------------RAIKVVGTP-AYEEMVRNCMNQ--DLSWKGPAKNWENVLLGL 511 (536)
T ss_dssp HHHHHH-------------------------HHHHHTTSH-HHHHHHHHHHHS--CCSSHHHHHHHHHHHHTT
T ss_pred HHHHHH-------------------------HHHHHCCCH-HHHHHHHHHHHH--CCCHHHHHHHHHHHHHHH
T ss_conf 999999-------------------------999852959-999999998773--599999999999999986
No 6
>3nb0_A Glycogen [starch] synthase isoform 2; glycogen synthase, glucose-6-phosphate, yeast, allosteric AC transferase; HET: G6P; 2.41A {Saccharomyces cerevisiae} PDB: 3rt1_A* 3nch_A 3naz_A 3o3c_A* 3rsz_A*
Probab=1.00 E-value=1 Score=230.79 Aligned_cols=366 Identities=14% Similarity=0.101 Sum_probs=238.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEECCCCHHCHHHHHHHHHHHHCCCCHHHHHHHCCCEEEEEE
Q ss_conf 11103235556149999999997046643334999818985997701119999999998509995788650166089851
Q 004485 207 LRLKQQFFLCSASLQDMILRFKERKSGRQWSEFPSKVAVQLNDTHPTLAIPELMRLLMDEEGLGWDEAWDITTRTVAYTN 286 (749)
Q Consensus 207 lRl~Qe~fl~~a~l~~i~r~~~~~~g~~~l~~l~~~~viHlND~H~al~~~ellR~l~~~~~l~~d~a~~~~~~~~vfT~ 286 (749)
.+..+|.||+.+.++.+.. ++ . ..|+++|+||||++++ +.++|... ....+|||+
T Consensus 158 dd~~~F~y~~~avl~~l~~----~~------~-~~pdIiH~HDW~tg~~-~~~Lk~~~-------------~~i~tVfTi 212 (725)
T 3nb0_A 158 NDAILLGYTVAWFLGEVAH----LD------S-QHAIVAHFHEWLAGVA-LPLCRKRR-------------IDVVTIFTT 212 (725)
T ss_dssp HHHHHHHHHHHHHHHHHHH----HC------C-SEEEEEEEESGGGCTH-HHHHHHTT-------------CSCEEEEEE
T ss_pred HHHHHHHHHHHHHHHHHHH----CC------C-CCCCEEEECCHHHHHH-HHHHHHHC-------------CCCCEEEEE
T ss_conf 1899999999999999886----27------8-9984799473666289-99999757-------------899899997
Q ss_pred CCCC---H---HHHHHCCHH-HHHHHCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHCHHHHC
Q ss_conf 5880---3---566332199-99964146799999999999999997469981100113532479999831130111220
Q 004485 287 HTVL---P---EALEKWSQA-VMWKLLPRHMEIIEEIDKRFIAMVRSTRSDLESKIPSMCILDNNPKKPVVRMANLCVVS 359 (749)
Q Consensus 287 HT~~---~---~G~e~f~~~-l~~~~lp~~~~ii~~in~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~vnm~~lai~~ 359 (749)
|+.. . ||. |+.. .+.. ++.+++.. .+.+ +..++|.+.+++.
T Consensus 213 H~telGR~lagqg~--~~~y~~L~~-----------------------~~~d~ea~-~~~i------~~~~~~EKaga~~ 260 (725)
T 3nb0_A 213 HATLLGRYLCASGS--FDFYNCLES-----------------------VDVDHEAG-RFGI------YHRYCIERAAAHS 260 (725)
T ss_dssp SSCHHHHHHTSSSC--SCHHHHGGG-----------------------CCHHHHHH-HTTC------HHHHHHHHHHHHH
T ss_pred ECCHHHHHHHHCCC--CCHHHHHHH-----------------------CCCCHHHH-HHCH------HHHHHHHHHHHHH
T ss_conf 01646665652489--735443555-----------------------08973444-3110------6888999999974
Q ss_pred CCCCHHHHHHHHHHHHHHHHCCHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHCCCCC
Q ss_conf 56302224575999875210270000578865312477854545667912358998522863001470157642004899
Q 004485 360 AHTVNGVAQLHSDILKADLFADYVSLWPNKLQNKTNGITPRRWLRFCNPELSKIITKWLKTDQWVTNLDLLVGLRQFADN 439 (749)
Q Consensus 360 S~~vNgVS~lh~ei~~~~~~~~~~~l~p~ki~~ItNGI~~~~W~~~~np~~~~li~~~~~~~~w~~~~~~l~~l~~~~~d 439 (749)
|+.++|||+.+++++++ .++ .-++++ |.|||++..| +|. .
T Consensus 261 AD~ITTVS~~yA~Ei~~-Ll~----r~~d~i--IpNGID~~~f----~p~---------~-------------------- 300 (725)
T 3nb0_A 261 ADVFTTVSQITAFEAEH-LLK----RKPDGI--LPNGLNVIKF----QAF---------H-------------------- 300 (725)
T ss_dssp SSEEEESSHHHHHHHHH-HTS----SCCSEE--CCCCBCCCCC----SST---------T--------------------
T ss_pred CCEEEECCHHHHHHHHH-HHC----CCCCEE--ECCCCCCCCC----CCC---------H--------------------
T ss_conf 89999899899999999-966----999879--7588103545----841---------3--------------------
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHC--CCCC-CCCEEEEECCCCC-CCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCC
Q ss_conf 789999999999999999999999949--9789-9970686735531-00000000256799999976119223379999
Q 004485 440 TELQAEWESAKMASKKHLADYIWRVTG--VTID-PNSLFDIQVKRIH-EYKRQLLNILGAIYRYKKLKEMSPQERKKTTP 515 (749)
Q Consensus 440 ~~~~~~~~~~K~~nK~~L~~~i~~~~g--~~~~-~~~~~~~~vrR~~-eyKR~~Lnil~~i~~~~~i~~~~~~~~~~~~p 515 (749)
+ ..+.|.++|++++++++.+++ +.++ ++.+++..+.|++ ++||.+| ++..+.++.+.+.... .+.+=
T Consensus 301 -~----~~~~k~~aK~klq~~l~~~~~~~l~l~~dk~liifivgRle~~nKGiDl-~ieAl~~L~~~l~~~~---~~~~v 371 (725)
T 3nb0_A 301 -E----FQNLHALKKEKINDFVRGHFHGCFDFDLDNTLYFFIAGRYEYKNKGADM-FIEALARLNYRLKVSG---SKKTV 371 (725)
T ss_dssp -H----HHHHHHHHHHHHHHHHHHHTTTCCCSCGGGEEEEEEESSCCTTTTTHHH-HHHHHHHHHHHHHHTT---CCCEE
T ss_pred -H----HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEEEEECCCCCCHHH-HHHHHHHHHHHHHHCC---CCCCE
T ss_conf -5----6777999999999998763046778897760499999983234488799-9999999999876346---89837
Q ss_pred EEEEEEECCCCCCH-----------------------HHHHHHHHHH--------------------------------H
Q ss_conf 59999722895898-----------------------7899999999--------------------------------9
Q 004485 516 RTIMIGGKAFATYT-----------------------NAKRIVKLVN--------------------------------D 540 (749)
Q Consensus 516 ~q~If~GKa~P~y~-----------------------~~K~iIk~I~--------------------------------~ 540 (749)
+-||+...+.-++. .||++..... .
T Consensus 372 vafii~p~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~l~~~~~~~lkr~~~~ 451 (725)
T 3nb0_A 372 VAFIVMPAKNNSFTVEALKGQAEVRALENTVHEVTTSIGKRIFDHAIRYPHNGLTTELPTDLGELLKSSDKVMLKRRILA 451 (725)
T ss_dssp EEEEECCCCEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSTTCCSSSCCCHHHHCCHHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCCCHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHCCHHHHHHHHHHHHH
T ss_conf 99999378778876666311358999998999999987688999974053445577789898886396777888888776
Q ss_pred H--------------------------HHHHCCCCCCCCCCEEEEECCCCHHH-------HHHHCCCCCCCCCCCCCCCC
Q ss_conf 8--------------------------76533995889933599983889778-------97323576311236877756
Q 004485 541 V--------------------------GEVVNTDPEVNSYLKVVFVPNYNVSV-------AELLIPGSELSQHISTAGME 587 (749)
Q Consensus 541 l--------------------------a~~in~d~~~~~~lkVvFlenY~v~l-------A~~l~~g~Di~l~~s~~~~E 587 (749)
. .+..+-...-.++.||+|++.|--.. -..++++||++.+||+ +|
T Consensus 452 ~~~~~~~lpp~~TH~~~~~~~D~Il~~~r~l~L~N~~~drVKVIf~P~~L~~~d~lf~~d~~~~~~~advfV~PS~--~E 529 (725)
T 3nb0_A 452 LRRPEGQLPPIVTHNMVDDANDLILNKIRQVQLFNSPSDRVKMIFHPEFLNANNPILGLDYDEFVRGCHLGVFPSY--YE 529 (725)
T ss_dssp HCCCTTCCCCSBSEEETTGGGCHHHHHHHHHTCCCCTTCSEEEEECCSCCCTTCSSSCCCHHHHHHHCSEEECCCS--SB
T ss_pred HCCCCCCCCCEEEEECCCCCCCHHHHHHHHCCCCCCCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHCEEEEECCC--CC
T ss_conf 4047788997366603557754899999864877776774549993331478886410278999864659996566--57
Q ss_pred CCCCCHHHHHHCCCEEEEECCCHHHHHHHHHCC-----CCEEEECCCCCCCHHHHHHCCCCCCCCCHHHHHHHHHHHCCC
Q ss_conf 788211367613842644057625899998348-----527761575430043552016899999925799998884198
Q 004485 588 ASGTSNMKFSLNGCLIIGTLDGANVEIRQEIGE-----ENFFLFGAVAEQVPKLRKEREDGLFKPDPRFEEAKQFIRSGA 662 (749)
Q Consensus 588 AsGTs~Mkam~NG~l~istlDG~~vE~~~~~Gg-----~n~~~fG~~~d~v~~~~~~~~y~~~~~~~~~~~~~~~~~~g~ 662 (749)
++|...|-||..|++.|.+.-|...|.+.+..+ ++|+.|-..
T Consensus 530 gfGl~~LEAmA~G~PvI~s~~gG~~d~V~dg~~~~~~~~tG~lV~~r--------------------------------- 576 (725)
T 3nb0_A 530 PWGYTPAECTVMGVPSITTNVSGFGSYMEDLIETNQAKDYGIYIVDR--------------------------------- 576 (725)
T ss_dssp SSCHHHHHHHHTTCCEEEETTBHHHHHHHTTSCHHHHHHTTEEEECC---------------------------------
T ss_pred CCCHHHHHHHHCCCCEEEECCCCHHHHHHCCCCCCCCCCCEEEEECC---------------------------------
T ss_conf 88789999998199889927997066654023456777856999478---------------------------------
Q ss_pred CCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHH--CHHHHHHHHHHHHCCCCCCCHHHHHHHHHHH
Q ss_conf 8999959899998208899988633114880679999999999810--9989999999972058999968999999999
Q 004485 663 FGSYDYNPLLDSLEGNTGYGRGDYFLVGYDFPSYLEAQDRVDQAYK--DQKKWLKMSILSTAGSGKFSSDRTIAQYAKE 739 (749)
Q Consensus 663 f~~~~~~~i~~~l~~~~~~~~~D~~~v~~Df~~y~~~q~~v~~~Y~--d~~~W~~~~~~~ia~~g~FSsdrsi~eY~~~ 739 (749)
.+++++++.++|. +++..|. ++..+.++...+...+..|||++++++|.+-
T Consensus 577 -d~~d~ee~aeaLa-------------------------~aL~~f~~~d~~~r~~mr~~ar~~A~~FSWe~iA~~Yl~~ 629 (725)
T 3nb0_A 577 -RFKAPDESVEQLV-------------------------DYMEEFVKKTRRQRINQRNATEALSDLLDWKRMGLEYVKA 629 (725)
T ss_dssp -SSSCHHHHHHHHH-------------------------HHHHHHHTCCHHHHHHHHHHHHHGGGGGBHHHHHHHHHHH
T ss_pred -CCCCHHHHHHHHH-------------------------HHHHHHHHCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH
T ss_conf -8899899999999-------------------------9999987099999999999999999839999999999999
No 7
>1rzu_A Glycogen synthase 1; glycosyl-transferase, GT-B fold, rossmann fold, ADP-binding, transferase; HET: ADP; 2.30A {Agrobacterium tumefaciens} SCOP: c.87.1.8 PDB: 1rzv_A
Probab=1.00 E-value=1 Score=172.73 Aligned_cols=334 Identities=17% Similarity=0.183 Sum_probs=224.6
Q ss_pred CCCCEEEECCCCHHCHHHHHHHHHHHHCCCCHHHHHHHCCCEEEEEECCCCHHHHHHCCHHHHHHHCHHHHHHHHHHHHH
Q ss_conf 99818985997701119999999998509995788650166089851588035663321999996414679999999999
Q 004485 240 PSKVAVQLNDTHPTLAIPELMRLLMDEEGLGWDEAWDITTRTVAYTNHTVLPEALEKWSQAVMWKLLPRHMEIIEEIDKR 319 (749)
Q Consensus 240 ~~~~viHlND~H~al~~~ellR~l~~~~~l~~d~a~~~~~~~~vfT~HT~~~~G~e~f~~~l~~~~lp~~~~ii~~in~~ 319 (749)
.+||+||+|+++++++ +.+++.. ...+..+++|.|+..+++. ++...+..
T Consensus 129 ~~~DiIh~~~~~~~~~-~~~~~~~------------~~~~~p~v~t~H~~~~~~~--~~~~~~~~--------------- 178 (485)
T 1rzu_A 129 WRPDMVHAHDWQAAMT-PVYMRYA------------ETPEIPSLLTIHNIAFQGQ--FGANIFSK--------------- 178 (485)
T ss_dssp CCCSEEEEEHHHHTTH-HHHHHHS------------SSCCCCEEEEESCTTCCCE--ECGGGGGG---------------
T ss_pred CCCCEEEECCCCHHHH-HHHHHHC------------CCCCCCEEEEECCCCCCCC--CCHHHHHH---------------
T ss_conf 9998899646305578-9997310------------3589978999667544687--88778734---------------
Q ss_pred HHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHCHHHHCCCCCHHHHHHHHHHHHHHHHC-CH---HHHCCCCCCCCCC
Q ss_conf 9999997469981100113532479999831130111220563022245759998752102-70---0005788653124
Q 004485 320 FIAMVRSTRSDLESKIPSMCILDNNPKKPVVRMANLCVVSAHTVNGVAQLHSDILKADLFA-DY---VSLWPNKLQNKTN 395 (749)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~vnm~~lai~~S~~vNgVS~lh~ei~~~~~~~-~~---~~l~p~ki~~ItN 395 (749)
.+.+...+ ....... .....+...++..++.+.+||+...+.++...++ ++ .+..+.++.-|-|
T Consensus 179 --------~~~~~~~~-~~~~~~~---~~~~~~~~~~~~~ad~vi~~S~~~~~~~~~~~~g~~~~~~~~~~~~~~~vi~n 246 (485)
T 1rzu_A 179 --------LALPAHAF-GMEGIEY---YNDVSFLKGGLQTATALSTVSPSYAEEILTAEFGMGLEGVIGSRAHVLHGIVN 246 (485)
T ss_dssp --------SCCCGGGS-STTTTEE---TTEEEHHHHHHHHCSEEEESCHHHHHHTTSHHHHTTCHHHHHTTGGGEEECCC
T ss_pred --------CCCCHHHC-CCCCCCC---CCCCCHHHHHHHHCCEEEECCHHHHHHHHCCCCCCCHHHHHHHHCCCCEEECC
T ss_conf --------39980320-2000132---56235999888646779960875899983543576658999860688169708
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEE
Q ss_conf 77854545667912358998522863001470157642004899789999999999999999999999949978999706
Q 004485 396 GITPRRWLRFCNPELSKIITKWLKTDQWVTNLDLLVGLRQFADNTELQAEWESAKMASKKHLADYIWRVTGVTIDPNSLF 475 (749)
Q Consensus 396 GI~~~~W~~~~np~~~~li~~~~~~~~w~~~~~~l~~l~~~~~d~~~~~~~~~~K~~nK~~L~~~i~~~~g~~~~~~~~~ 475 (749)
||+...| +|..+..+...+. .++ + ..|..+|..+. +++|++.+ +.++
T Consensus 247 gvd~~~~----~~~~~~~~~~~~~-----------------~~~------~-~~~~~~~~~~r----~~~~~~~~-~~~~ 293 (485)
T 1rzu_A 247 GIDADVW----NPATDHLIHDNYS-----------------AAN------L-KNRALNKKAVA----EHFRIDDD-GSPL 293 (485)
T ss_dssp CBCTTTS----CTTTCTTSSSCCB-----------------TTB------C-TTHHHHHHHHH----HHHTCCCS-SSCE
T ss_pred CCCCCCC----CCCCCCCCCCCCC-----------------CCC------H-HHHHHHHHHHH----HHCCCCCC-CCEE
T ss_conf 9860205----8866511000124-----------------324------4-56788699999----96298889-9839
Q ss_pred EEECCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCC
Q ss_conf 86735531000000002567999999761192233799995999972289589878999999999876533995889933
Q 004485 476 DIQVKRIHEYKRQLLNILGAIYRYKKLKEMSPQERKKTTPRTIMIGGKAFATYTNAKRIVKLVNDVGEVVNTDPEVNSYL 555 (749)
Q Consensus 476 ~~~vrR~~eyKR~~Lnil~~i~~~~~i~~~~~~~~~~~~p~q~If~GKa~P~y~~~K~iIk~I~~la~~in~d~~~~~~l 555 (749)
++++.|+..+|+.++ ++..+.++.+ . ++++++.|.+.+.+.. .+..+++. .++
T Consensus 294 i~~vGrl~~~Kg~~~-li~a~~~l~~--~----------~~~l~ivG~g~~~~~~------~l~~~~~~------~~~-- 346 (485)
T 1rzu_A 294 FCVISRLTWQKGIDL-MAEAVDEIVS--L----------GGRLVVLGAGDVALEG------ALLAAASR------HHG-- 346 (485)
T ss_dssp EEEESCBSTTTTHHH-HHTTHHHHHH--T----------TCEEEEEECBCHHHHH------HHHHHHHH------TTT--
T ss_pred EEEECCCCCCCCHHH-HHHHHHHHHH--C----------CCEEEEEECCCHHHHH------HHHHHHHH------CCC--
T ss_conf 999725753128799-9999999872--6----------9569999689468999------99999986------788--
Q ss_pred EEEEECCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCEEEEECCCHHHHHHHHH-------CCCCEEEECC
Q ss_conf 599983889778973235763112368777567882113676138426440576258999983-------4852776157
Q 004485 556 KVVFVPNYNVSVAELLIPGSELSQHISTAGMEASGTSNMKFSLNGCLIIGTLDGANVEIRQEI-------GEENFFLFGA 628 (749)
Q Consensus 556 kVvFlenY~v~lA~~l~~g~Di~l~~s~~~~EAsGTs~Mkam~NG~l~istlDG~~vE~~~~~-------Gg~n~~~fG~ 628 (749)
+|.|+.+++.+....++++||++++||+ +|++|++-+-||..|.+.|++..|...|++++. ++.||++|.
T Consensus 347 ~v~~~~g~~~~~~~~~~~~adv~v~pS~--~E~~~~~~lEAma~G~PvI~s~~gg~~e~v~~~~~~~~~~~~~~G~l~~- 423 (485)
T 1rzu_A 347 RVGVAIGYNEPLSHLMQAGCDAIIIPSR--FEPCGLTQLYALRYGCIPVVARTGGLADTVIDANHAALASKAATGVQFS- 423 (485)
T ss_dssp TEEEEESCCHHHHHHHHHHCSEEEECCS--CCSSCSHHHHHHHHTCEEEEESSHHHHHHCCBCCHHHHHTTCCCBEEES-
T ss_pred CEEEECCCCHHHHHHHHHCCCEEEECCC--CCCCCHHHHHHHHCCCCEEEECCCCHHHEECCCCCCCCCCCCCCCEEEC-
T ss_conf 6899438997999999852999997844--6887779999997799779808998311321565332345677634867-
Q ss_pred CCCCCHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 54300435520168999999257999988841988999959899998208899988633114880679999999999810
Q 004485 629 VAEQVPKLRKEREDGLFKPDPRFEEAKQFIRSGAFGSYDYNPLLDSLEGNTGYGRGDYFLVGYDFPSYLEAQDRVDQAYK 708 (749)
Q Consensus 629 ~~d~v~~~~~~~~y~~~~~~~~~~~~~~~~~~g~f~~~~~~~i~~~l~~~~~~~~~D~~~v~~Df~~y~~~q~~v~~~Y~ 708 (749)
+.+.+++.++|. ++...|.
T Consensus 424 ------------------------------------~~d~~~la~~i~-------------------------~ll~~~~ 442 (485)
T 1rzu_A 424 ------------------------------------PVTLDGLKQAIR-------------------------RTVRYYH 442 (485)
T ss_dssp ------------------------------------SCSHHHHHHHHH-------------------------HHHHHHT
T ss_pred ------------------------------------CCCHHHHHHHHH-------------------------HHHHHHC
T ss_conf ------------------------------------899999999999-------------------------9998727
Q ss_pred CHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHH
Q ss_conf 998999999997205899996899999999972
Q 004485 709 DQKKWLKMSILSTAGSGKFSSDRTIAQYAKEIW 741 (749)
Q Consensus 709 d~~~W~~~~~~~ia~~g~FSsdrsi~eY~~~iw 741 (749)
|++.|.++..++.+. .|||++++++|.+-.-
T Consensus 443 ~~~~~~~~~~~~~~~--~fs~~~~~~~~~~~y~ 473 (485)
T 1rzu_A 443 DPKLWTQMQKLGMKS--DVSWEKSAGLYAALYS 473 (485)
T ss_dssp CHHHHHHHHHHHHTC--CCBHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHH--HCCHHHHHHHHHHHHH
T ss_conf 999999999999988--6896999999999999
No 8
>2qzs_A Glycogen synthase; glycosyl-transferase, GT-B fold, rossmann fold, closed-form, ADP and glucose binding, glycogen biosynthesis; HET: GLC ADP 250; 2.20A {Escherichia coli} PDB: 2r4t_A* 2r4u_A* 3guh_A* 3cx4_A* 3cop_A* 3d1j_A
Probab=1.00 E-value=1 Score=170.84 Aligned_cols=336 Identities=16% Similarity=0.169 Sum_probs=224.5
Q ss_pred CCCCEEEECCCCHHCHHHHHHHHHHHHCCCCHHHHHHHCCCEEEEEECCCCHHHHHHCCHHHHHHHCHHHHHHHHHHHHH
Q ss_conf 99818985997701119999999998509995788650166089851588035663321999996414679999999999
Q 004485 240 PSKVAVQLNDTHPTLAIPELMRLLMDEEGLGWDEAWDITTRTVAYTNHTVLPEALEKWSQAVMWKLLPRHMEIIEEIDKR 319 (749)
Q Consensus 240 ~~~~viHlND~H~al~~~ellR~l~~~~~l~~d~a~~~~~~~~vfT~HT~~~~G~e~f~~~l~~~~lp~~~~ii~~in~~ 319 (749)
.+||+||+|+++++++. .+++. . ..+..+|+|.|+..+++. ++...+..
T Consensus 128 ~~~Divh~~~~~~~~~~-~~~~~--~-----------~~~~p~v~t~H~~~~~~~--~~~~~~~~--------------- 176 (485)
T 2qzs_A 128 WRPDVVHAHDWHAGLAP-AYLAA--R-----------GRPAKSVFTVHNLAYQGM--FYAHHMND--------------- 176 (485)
T ss_dssp CCCSEEEEETGGGTTHH-HHHHH--T-----------TCSSEEEEEESCTTCCCE--EEGGGGGT---------------
T ss_pred CCCCEEEEECCCHHHHH-HHHHH--C-----------CCCCCEEEEECCCCCCCC--CCHHHHHH---------------
T ss_conf 89978996062133789-99754--3-----------689978999468413578--89888876---------------
Q ss_pred HHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHCHHHHCCCCCHHHHHHHHHHHHHHHHC-CHHHH---CC--CCCCCC
Q ss_conf 9999997469981100113532479999831130111220563022245759998752102-70000---57--886531
Q 004485 320 FIAMVRSTRSDLESKIPSMCILDNNPKKPVVRMANLCVVSAHTVNGVAQLHSDILKADLFA-DYVSL---WP--NKLQNK 393 (749)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~vnm~~lai~~S~~vNgVS~lh~ei~~~~~~~-~~~~l---~p--~ki~~I 393 (749)
.+.....+ ....... .....+...++..++.+.+||+...+.++...++ +...+ .+ .++.-|
T Consensus 177 --------~~~~~~~~-~~~~~~~---~~~~~~~~~~~~~ad~vi~~S~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi 244 (485)
T 2qzs_A 177 --------IQLPWSFF-NIHGLEF---NGQISFLKAGLYYADHITAVSPTYAREITEPQFAYGMEGLLQQRHREGRLSGV 244 (485)
T ss_dssp --------TTCCGGGC-STTTTEE---TTEEEHHHHHHHHCSEEEESSHHHHHHTTSHHHHTTCHHHHHHHHHTTCEEEC
T ss_pred --------CCCCCHHC-CCCCCCC---CCCCCHHHHHHHHCCEEEECCHHHHHHHHCCCCCCCHHHHHHHHCCCCCEEEE
T ss_conf --------49991321-3111232---46546999998753868856889999985401472468999850667866997
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
Q ss_conf 24778545456679123589985228630014701576420048997899999999999999999999999499789997
Q 004485 394 TNGITPRRWLRFCNPELSKIITKWLKTDQWVTNLDLLVGLRQFADNTELQAEWESAKMASKKHLADYIWRVTGVTIDPNS 473 (749)
Q Consensus 394 tNGI~~~~W~~~~np~~~~li~~~~~~~~w~~~~~~l~~l~~~~~d~~~~~~~~~~K~~nK~~L~~~i~~~~g~~~~~~~ 473 (749)
-|||+...| +|..+..+...++ .++ + ..|..+|..+. +++|++.+++.
T Consensus 245 ~ngvd~~~~----~~~~~~~~~~~~~-----------------~~~------~-~~~~~~~~~~r----~~~~~~~~~~~ 292 (485)
T 2qzs_A 245 LNGVDEKIW----SPETDLLLASRYT-----------------RDT------L-EDKAENKRQLQ----IAMGLKVDDKV 292 (485)
T ss_dssp CCCCCTTTS----CTTTCTTSSSCCC-----------------TTC------G-GGGHHHHHHHH----HHHTCCCCTTS
T ss_pred ECCCCCCCC----CCCCCCCCCCCCC-----------------CCC------H-HHHHHHHHHHH----HHCCCCCCCCC
T ss_conf 469876645----8644422212366-----------------300------6-57788499999----87198889997
Q ss_pred EEEEECCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCCCC
Q ss_conf 06867355310000000025679999997611922337999959999722895898789999999998765339958899
Q 004485 474 LFDIQVKRIHEYKRQLLNILGAIYRYKKLKEMSPQERKKTTPRTIMIGGKAFATYTNAKRIVKLVNDVGEVVNTDPEVNS 553 (749)
Q Consensus 474 ~~~~~vrR~~eyKR~~Lnil~~i~~~~~i~~~~~~~~~~~~p~q~If~GKa~P~y~~~K~iIk~I~~la~~in~d~~~~~ 553 (749)
++++++.|+..+|+.++ ++..+.++.+ . ++++++.|.+.+.+.. .+..+++. .++
T Consensus 293 ~~i~~vGrl~~~Kg~~~-li~a~~~l~~--~----------~~~l~ivG~g~~~~~~------~l~~~~~~------~~~ 347 (485)
T 2qzs_A 293 PLFAVVSRLTSQKGLDL-VLEALPGLLE--Q----------GGQLALLGAGDPVLQE------GFLAAAAE------YPG 347 (485)
T ss_dssp CEEEEEEEESGGGCHHH-HHHHHHHHHH--T----------TCEEEEEEEECHHHHH------HHHHHHHH------STT
T ss_pred EEEEEECCCCCCCCHHH-HHHHHHHHHH--C----------CCEEEEEECCCHHHHH------HHHHHHHH------CCC
T ss_conf 39999666754358799-9999999862--7----------9489999289567899------99999975------799
Q ss_pred CCEEEEECCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCEEEEECCCHHHHHHHHH-------CCCCEEEE
Q ss_conf 33599983889778973235763112368777567882113676138426440576258999983-------48527761
Q 004485 554 YLKVVFVPNYNVSVAELLIPGSELSQHISTAGMEASGTSNMKFSLNGCLIIGTLDGANVEIRQEI-------GEENFFLF 626 (749)
Q Consensus 554 ~lkVvFlenY~v~lA~~l~~g~Di~l~~s~~~~EAsGTs~Mkam~NG~l~istlDG~~vE~~~~~-------Gg~n~~~f 626 (749)
+|.|+.++..+....++++||++++||+ +|++|++-+-||..|.+.|++..|...|++++. ++.+|++|
T Consensus 348 --~v~~~~g~~~~~~~~~~~~adv~v~pS~--~E~~g~~~lEAma~G~PvI~s~~gg~~e~v~~~~~~~~~~~~~~G~l~ 423 (485)
T 2qzs_A 348 --QVGVQIGYHEAFSHRIMGGADVILVPSR--FEPCGLTQLYGLKYGTLPLVRRTGGLADTVSDCSLENLADGVASGFVF 423 (485)
T ss_dssp --TEEEEESCCHHHHHHHHHHCSEEEECCS--CCSSCSHHHHHHHHTCEEEEESSHHHHHHCCBCCHHHHHTTCCCBEEE
T ss_pred --CEEEECCCCHHHHHHHHHHCCEEEECCC--CCCCCHHHHHHHHCCCCEEECCCCCCCCEECCCCCCCCCCCCCCEEEE
T ss_conf --3899478997999999975889997885--678767999999779977987899832552157644344466645997
Q ss_pred CCCCCCCHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 57543004355201689999992579999888419889999598999982088999886331148806799999999998
Q 004485 627 GAVAEQVPKLRKEREDGLFKPDPRFEEAKQFIRSGAFGSYDYNPLLDSLEGNTGYGRGDYFLVGYDFPSYLEAQDRVDQA 706 (749)
Q Consensus 627 G~~~d~v~~~~~~~~y~~~~~~~~~~~~~~~~~~g~f~~~~~~~i~~~l~~~~~~~~~D~~~v~~Df~~y~~~q~~v~~~ 706 (749)
. +.+.+++.++|. ++...
T Consensus 424 ~-------------------------------------~~d~~~la~~i~-------------------------~ll~~ 441 (485)
T 2qzs_A 424 E-------------------------------------DSNAWSLLRAIR-------------------------RAFVL 441 (485)
T ss_dssp C-------------------------------------SSSHHHHHHHHH-------------------------HHHHH
T ss_pred C-------------------------------------CCCHHHHHHHHH-------------------------HHHHH
T ss_conf 7-------------------------------------899999999999-------------------------99987
Q ss_pred HHCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCC
Q ss_conf 1099899999999720589999689999999997246
Q 004485 707 YKDQKKWLKMSILSTAGSGKFSSDRTIAQYAKEIWNI 743 (749)
Q Consensus 707 Y~d~~~W~~~~~~~ia~~g~FSsdrsi~eY~~~iw~~ 743 (749)
|.|++.+.++..++.+. .|||++++++|.+-.-.+
T Consensus 442 ~~~~~~~~~~~~~~~~~--~fs~~~~~~~~~~ly~~~ 476 (485)
T 2qzs_A 442 WSRPSLWRFVQRQAMAM--DFSWQVAAKSYRELYYRL 476 (485)
T ss_dssp HTSHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHH--CCCHHHHHHHHHHHHHHH
T ss_conf 08999999999998763--289899999999999986
No 9
>3s28_A Sucrose synthase 1; glycosyltransferase, sucrose metabolism, sugar donar complex rossmann fold, GT-B fold, glycosyltansferase, UDP-glucose; HET: UDP LCN NHF; 2.80A {Arabidopsis thaliana} PDB: 3s27_A* 3s29_A*
Probab=1.00 E-value=1 Score=144.78 Aligned_cols=332 Identities=13% Similarity=0.058 Sum_probs=208.2
Q ss_pred CCCCEEEECCCCHHCHHHHHHHHHHHHCCCCHHHHHHHCCCEEEEEECCCCHHHHHHCCHHHHHHHCHHHHHHHHHHHHH
Q ss_conf 99818985997701119999999998509995788650166089851588035663321999996414679999999999
Q 004485 240 PSKVAVQLNDTHPTLAIPELMRLLMDEEGLGWDEAWDITTRTVAYTNHTVLPEALEKWSQAVMWKLLPRHMEIIEEIDKR 319 (749)
Q Consensus 240 ~~~~viHlND~H~al~~~ellR~l~~~~~l~~d~a~~~~~~~~vfT~HT~~~~G~e~f~~~l~~~~lp~~~~ii~~in~~ 319 (749)
.+||+||.|.|.++++. .++... .+..+|+|.|++.......-+. .... ++.
T Consensus 406 ~~PDVIHsH~~~sglva-~llar~--------------~gvP~V~T~Hsl~~~k~~~~~~-~~~~-----------~~~- 457 (816)
T 3s28_A 406 GKPDLIIGNYSDGNLVA-SLLAHK--------------LGVTQCTIAHALEKTKYPDSDI-YWKK-----------LDD- 457 (816)
T ss_dssp SCCSEEEEEHHHHHHHH-HHHHHH--------------HTCCEEEECSCCHHHHSTTTTT-THHH-----------HHH-
T ss_pred CCCEEEEECCCHHHHHH-HHHHHH--------------CCCCEEEEEECCCCCCCCCCCC-HHHH-----------HHH-
T ss_conf 99739996885389999-999997--------------5998899981663001222330-1556-----------778-
Q ss_pred HHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHCHHHHCCCCCHHHHHHHHHHHHHHHHCCHH----------------
Q ss_conf 9999997469981100113532479999831130111220563022245759998752102700----------------
Q 004485 320 FIAMVRSTRSDLESKIPSMCILDNNPKKPVVRMANLCVVSAHTVNGVAQLHSDILKADLFADYV---------------- 383 (749)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~vnm~~lai~~S~~vNgVS~lh~ei~~~~~~~~~~---------------- 383 (749)
.+. + . .++..-..++..|+.|.++|+...+.+++ ..+.+.
T Consensus 458 -------~y~-----~---~--------~r~~aE~~~l~~AD~VIa~S~~~~~~l~~-~~~~y~~~~~~~~p~Lyr~~~g 513 (816)
T 3s28_A 458 -------KYH-----F---S--------CQFTADIFAMNHTDFIITSTFQEIAGSKE-TVGQYESHTAFTLPGLYRVVHG 513 (816)
T ss_dssp -------HHC-----H---H--------HHHHHHHHHHHHSSEEEESCHHHHHCCSS-SCCTTGGGSSEEETTTEEEEES
T ss_pred -------HHH-----H---H--------HHHHHHHHHHHHCCEEEECCHHHHHHHHH-HHHHHHHHHCCCCCHHHHCCCC
T ss_conf -------888-----9---8--------88889999998499999888999999998-8877644201354112210122
Q ss_pred -HHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf -0057886531247785454566791235899852286300147015764200489978999999999999999999999
Q 004485 384 -SLWPNKLQNKTNGITPRRWLRFCNPELSKIITKWLKTDQWVTNLDLLVGLRQFADNTELQAEWESAKMASKKHLADYIW 462 (749)
Q Consensus 384 -~l~p~ki~~ItNGI~~~~W~~~~np~~~~li~~~~~~~~w~~~~~~l~~l~~~~~d~~~~~~~~~~K~~nK~~L~~~i~ 462 (749)
+.++.|+.-|-||||...+ .|...+. ..+. .+.... +....++... +
T Consensus 514 I~~~~~ki~VIpnGVD~~~F----~P~~~~~--~Rl~---------------------~~~~~i-~~~l~~p~~~----r 561 (816)
T 3s28_A 514 IDVFDPKFNIVSPGADMSIY----FPYTEEK--RRLT---------------------KFHSEI-EELLYSDVEN----K 561 (816)
T ss_dssp CCTTCTTEEECCCCCCTTTS----CCTTCTT--TCCG---------------------GGHHHH-HHHHHCSCCB----T
T ss_pred CCCCCCCEEEECCCCCHHHC----CCCCHHH--HHHH---------------------HCCCCC-CCCCCCHHHH----H
T ss_conf 44677887998897478872----8631035--5432---------------------002320-0012460567----7
Q ss_pred HHHCCCCCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEECCCC---CCHHHHHHHHHHH
Q ss_conf 9949978999706867355310000000025679999997611922337999959999722895---8987899999999
Q 004485 463 RVTGVTIDPNSLFDIQVKRIHEYKRQLLNILGAIYRYKKLKEMSPQERKKTTPRTIMIGGKAFA---TYTNAKRIVKLVN 539 (749)
Q Consensus 463 ~~~g~~~~~~~~~~~~vrR~~eyKR~~Lnil~~i~~~~~i~~~~~~~~~~~~p~q~If~GKa~P---~y~~~K~iIk~I~ 539 (749)
+..|+..+++.+++++++|+..+|+.++ ++..+.++.+.. .++++++.|.+.+ .+...+.....+.
T Consensus 562 ~~lg~l~~~~~~vIl~vGRl~~~KGid~-LIeA~~~L~~~~----------~~v~LvIvG~g~~~~~~~~e~~~~~~~L~ 630 (816)
T 3s28_A 562 EHLCVLKDKKKPILFTMARLDRVKNLSG-LVEWYGKNTRLR----------ELANLVVVGGDRRKESKDNEEKAEMKKMY 630 (816)
T ss_dssp TEESCBSCTTSCEEEEECCCCTTTTHHH-HHHHHHHCHHHH----------HHCEEEEECCCTTSCCCCHHHHHHHHHHH
T ss_pred HHHCCCCCCCCEEEEEECCCCCCCCHHH-HHHHHHHHHHHC----------CCEEEEEEECCCCCCCCCHHHHHHHHHHH
T ss_conf 7744457899839999744722179999-999999978557----------99699999688753334335699999999
Q ss_pred HHHHHHCCCCCCCCCCEEEEECCC-----CHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCEEEEECCCHHHHH
Q ss_conf 987653399588993359998388-----977897323576311236877756788211367613842644057625899
Q 004485 540 DVGEVVNTDPEVNSYLKVVFVPNY-----NVSVAELLIPGSELSQHISTAGMEASGTSNMKFSLNGCLIIGTLDGANVEI 614 (749)
Q Consensus 540 ~la~~in~d~~~~~~lkVvFlenY-----~v~lA~~l~~g~Di~l~~s~~~~EAsGTs~Mkam~NG~l~istlDG~~vE~ 614 (749)
.+++..+ ..+ +|.|+.-- ..++.+.+..++|++.+||+ +|++|++-+-||..|.+.|++..|...|+
T Consensus 631 ~li~~lg----L~~--~V~flG~~~~~v~~~eL~~~~~~aaDvfV~PS~--~EgfglvllEAMA~G~PVIasd~GG~~Ei 702 (816)
T 3s28_A 631 DLIEEYK----LNG--QFRWISSQMDRVRNGELYRYICDTKGAFVQPAL--YEAFGLTVVEAMTCGLPTFATCKGGPAEI 702 (816)
T ss_dssp HHHHHTT----CBB--BEEEECCCCCHHHHHHHHHHHHHTTCEEEECCS--CBSSCHHHHHHHHTTCCEEEESSBTHHHH
T ss_pred HHHHHCC----CCC--CEEECCCCCCCCCHHHHHHHHHHCCEEEEECCC--CCCCCHHHHHHHHCCCCEEEECCCCHHHH
T ss_conf 9999749----987--289816755668999999999956909998887--55764999999980999999689876999
Q ss_pred HHHHCCCCEEEECCCCCCCHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCH
Q ss_conf 99834852776157543004355201689999992579999888419889999598999982088999886331148806
Q 004485 615 RQEIGEENFFLFGAVAEQVPKLRKEREDGLFKPDPRFEEAKQFIRSGAFGSYDYNPLLDSLEGNTGYGRGDYFLVGYDFP 694 (749)
Q Consensus 615 ~~~~Gg~n~~~fG~~~d~v~~~~~~~~y~~~~~~~~~~~~~~~~~~g~f~~~~~~~i~~~l~~~~~~~~~D~~~v~~Df~ 694 (749)
+.+ ++||++|... +.+++.++|.
T Consensus 703 V~d--g~~Gllv~p~-------------------------------------D~e~LA~aI~------------------ 725 (816)
T 3s28_A 703 IVH--GKSGFHIDPY-------------------------------------HGDQAADTLA------------------ 725 (816)
T ss_dssp CCB--TTTBEEECTT-------------------------------------SHHHHHHHHH------------------
T ss_pred HCC--CCCEEEECCC-------------------------------------CHHHHHHHHH------------------
T ss_conf 706--9818996899-------------------------------------9999999999------------------
Q ss_pred HHHHHHHHHH-HHHHCHHHHHHHHHHHHCCC-CCCCHHHHHHHHHH
Q ss_conf 7999999999-98109989999999972058-99996899999999
Q 004485 695 SYLEAQDRVD-QAYKDQKKWLKMSILSTAGS-GKFSSDRTIAQYAK 738 (749)
Q Consensus 695 ~y~~~q~~v~-~~Y~d~~~W~~~~~~~ia~~-g~FSsdrsi~eY~~ 738 (749)
++. ..+.|++.|.++..++...+ ..|||++++++|.+
T Consensus 726 -------~lL~~Ll~d~~~~~~m~~~ar~~a~~~fSwe~~a~~ll~ 764 (816)
T 3s28_A 726 -------DFFTKCKEDPSHWDEISKGGLQRIEEKYTWQIYSQRLLT 764 (816)
T ss_dssp -------HHHHHHHHCTHHHHHHHHHHHHHHHHSCCHHHHHHHHHH
T ss_pred -------HHHHHHCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHH
T ss_conf -------999875269999999999999999986899999999999
No 10
>3fro_A GLGA glycogen synthase; glycosyltransferase family, UDP/ADP-glucose-glycogen synthas rossman folds, transferase; HET: NHF; 2.50A {Pyrococcus abyssi} SCOP: c.87.1.8 PDB: 2bis_A* 3l01_A*
Probab=1.00 E-value=1 Score=134.64 Aligned_cols=330 Identities=17% Similarity=0.136 Sum_probs=216.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEECCCCHHCHHHHHHHHHHHHCCCCHHHHHHHCCCEEEEEECC
Q ss_conf 10323555614999999999704664333499981898599770111999999999850999578865016608985158
Q 004485 209 LKQQFFLCSASLQDMILRFKERKSGRQWSEFPSKVAVQLNDTHPTLAIPELMRLLMDEEGLGWDEAWDITTRTVAYTNHT 288 (749)
Q Consensus 209 l~Qe~fl~~a~l~~i~r~~~~~~g~~~l~~l~~~~viHlND~H~al~~~ellR~l~~~~~l~~d~a~~~~~~~~vfT~HT 288 (749)
+.+...+..+..+.+ +.. +..-.+||+||+|+++++++. .+++.. .+..+++|.|+
T Consensus 99 ~~~~~~~~~~~~~~~-~~~--------~~~~~~~Dii~~~~~~~~~~~-~~~~~~--------------~~~~~v~~~h~ 154 (439)
T 3fro_A 99 IRKAVTFGRASVLLL-NDL--------LREEPLPDVVHFHDWHTVFAG-ALIKKY--------------FKIPAVFTIHR 154 (439)
T ss_dssp HHHHHHHHHHHHHHH-HHH--------TTTSCCCSEEEEESGGGHHHH-HHHHHH--------------HCCCEEEEESC
T ss_pred HHHHHHHHHHHHHHH-HHH--------HCCCCCCEEEEECCHHHHHHH-HHHHHC--------------CCCCEEEEECC
T ss_conf 232578999999999-997--------444799819994640343458-988652--------------69978999653
Q ss_pred CCHHHHHHCCHHHHHHHCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHCHHHHCCCCCHHHHH
Q ss_conf 80356633219999964146799999999999999997469981100113532479999831130111220563022245
Q 004485 289 VLPEALEKWSQAVMWKLLPRHMEIIEEIDKRFIAMVRSTRSDLESKIPSMCILDNNPKKPVVRMANLCVVSAHTVNGVAQ 368 (749)
Q Consensus 289 ~~~~G~e~f~~~l~~~~lp~~~~ii~~in~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~vnm~~lai~~S~~vNgVS~ 368 (749)
..+.+. +...+.. .. +..... .....+...++..++.+.+||+
T Consensus 155 ~~~~~~---~~~~~~~-----------------------~~-----~~~~~~------~~~~~~~~~~~~~ad~ii~~S~ 197 (439)
T 3fro_A 155 LNKSKL---PAFYFHE-----------------------AG-----LSELAP------YPDIDPEHTGGYIADIVTTVSR 197 (439)
T ss_dssp CCCCCE---EHHHHHH-----------------------TT-----CGGGCC------SSEECHHHHHHHHCSEEEESCH
T ss_pred CCCCCC---CHHHHCC-----------------------CC-----CCCCCC------CCEEEHHHHHHHHCCEEEECCH
T ss_conf 444568---5677474-----------------------55-----100356------6632076665543458872689
Q ss_pred HHHHHHHHHHHCCHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHCCCCCHHHHHHHHH
Q ss_conf 75999875210270000578865312477854545667912358998522863001470157642004899789999999
Q 004485 369 LHSDILKADLFADYVSLWPNKLQNKTNGITPRRWLRFCNPELSKIITKWLKTDQWVTNLDLLVGLRQFADNTELQAEWES 448 (749)
Q Consensus 369 lh~ei~~~~~~~~~~~l~p~ki~~ItNGI~~~~W~~~~np~~~~li~~~~~~~~w~~~~~~l~~l~~~~~d~~~~~~~~~ 448 (749)
.+.+.... +.+..+.++.-|-|||+...| +|.. +. .
T Consensus 198 ~~~~~~~~-----~~~~~~~~i~vi~ngvd~~~~----~~~~-------~~------------------~---------- 233 (439)
T 3fro_A 198 GYLIDEWG-----FFRNFEGKITYVFNGIDCSFW----NESY-------LT------------------G---------- 233 (439)
T ss_dssp HHHHHTHH-----HHGGGTTSEEECCCCCCTTTS----CGGG-------SC------------------S----------
T ss_pred HHHHHHHH-----HHHHCCCCEEECCCCCCCHHC----CCCC-------CC------------------C----------
T ss_conf 89999860-----565047734534788880430----8432-------21------------------1----------
Q ss_pred HHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCC-CCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEECCCCC
Q ss_conf 99999999999999994997899970686735531-00000000256799999976119223379999599997228958
Q 004485 449 AKMASKKHLADYIWRVTGVTIDPNSLFDIQVKRIH-EYKRQLLNILGAIYRYKKLKEMSPQERKKTTPRTIMIGGKAFAT 527 (749)
Q Consensus 449 ~K~~nK~~L~~~i~~~~g~~~~~~~~~~~~vrR~~-eyKR~~Lnil~~i~~~~~i~~~~~~~~~~~~p~q~If~GKa~P~ 527 (749)
.+...+..+. ++.|++ ++ +.+++++|+. .+|+.++ ++..+.++.+-. ...++++++.|.+.+.
T Consensus 234 ~~~~~~~~~~----~~~~~~--~~-~~i~~~G~~~~~~Kg~~~-li~a~~~l~~~~--------~~~~~~l~i~G~g~~~ 297 (439)
T 3fro_A 234 SRDERKKSLL----SKFGMD--EG-VTFMFIGRFDRGQKGVDV-LLKAIEILSSKK--------EFQEMRFIIIGKGDPE 297 (439)
T ss_dssp CHHHHHHHHH----HHHTCC--SC-EEEEEECCSSCTTBCHHH-HHHHHHHHHTSG--------GGGGEEEEEECCCCHH
T ss_pred HHHHHHHHHH----HHCCCC--CC-CEEEEECCCCCCCCCHHH-HHHHHHHHHHCC--------CCCCEEEEEECCCCHH
T ss_conf 0456699999----973999--98-479997333534366999-999999998546--------6787189998079726
Q ss_pred CHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECC-CCHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCEEEEE
Q ss_conf 98789999999998765339958899335999838-89778973235763112368777567882113676138426440
Q 004485 528 YTNAKRIVKLVNDVGEVVNTDPEVNSYLKVVFVPN-YNVSVAELLIPGSELSQHISTAGMEASGTSNMKFSLNGCLIIGT 606 (749)
Q Consensus 528 y~~~K~iIk~I~~la~~in~d~~~~~~lkVvFlen-Y~v~lA~~l~~g~Di~l~~s~~~~EAsGTs~Mkam~NG~l~ist 606 (749)
+.. .+..+++. .+ +++++.+ .+.+-...++++||++++||+ .|++|++-+-||..|.+.|++
T Consensus 298 ~~~------~l~~~~~~------~~---~~~~~~g~~~~~~~~~~~~~adv~v~ps~--~e~~~~~~~EAma~G~Pvi~s 360 (439)
T 3fro_A 298 LEG------WARSLEEK------HG---NVKVITEMLSREFVRELYGSVDFVIIPSY--FEPFGLVALEAMCLGAIPIAS 360 (439)
T ss_dssp HHH------HHHHHHHH------CT---TEEEECSCCCHHHHHHHHTTCSEEEECBS--CCSSCHHHHHHHHTTCEEEEE
T ss_pred HHH------HHHHHHHH------CC---CEEEECCCCCHHHHHHHHHHCCEEEECCC--CCCCCHHHHHHHHCCCCEEEC
T ss_conf 778------99998750------69---89997287998899999997799995898--788618999999779976973
Q ss_pred CCCHHHHHHHHHCCCCEEEECCCCCCCHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCCCCCHHHHHHHHHCCCCCCCCCC
Q ss_conf 57625899998348527761575430043552016899999925799998884198899995989999820889998863
Q 004485 607 LDGANVEIRQEIGEENFFLFGAVAEQVPKLRKEREDGLFKPDPRFEEAKQFIRSGAFGSYDYNPLLDSLEGNTGYGRGDY 686 (749)
Q Consensus 607 lDG~~vE~~~~~Gg~n~~~fG~~~d~v~~~~~~~~y~~~~~~~~~~~~~~~~~~g~f~~~~~~~i~~~l~~~~~~~~~D~ 686 (749)
..|...|+++. + +|+++.. .+.+++.+.|.
T Consensus 361 ~~~~~~e~~~~--~-~g~~~~~-------------------------------------~d~~~la~~i~---------- 390 (439)
T 3fro_A 361 AVGGLRDIITN--E-TGILVKA-------------------------------------GDPGELANAIL---------- 390 (439)
T ss_dssp SSTHHHHHCCT--T-TCEEECT-------------------------------------TCHHHHHHHHH----------
T ss_pred CCCCCCEEEEC--C-CEEEECC-------------------------------------CCHHHHHHHHH----------
T ss_conf 78874316875--8-4489688-------------------------------------99899999999----------
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCC
Q ss_conf 311488067999999999981099899999999720589999689999999997246
Q 004485 687 FLVGYDFPSYLEAQDRVDQAYKDQKKWLKMSILSTAGSGKFSSDRTIAQYAKEIWNI 743 (749)
Q Consensus 687 ~~v~~Df~~y~~~q~~v~~~Y~d~~~W~~~~~~~ia~~g~FSsdrsi~eY~~~iw~~ 743 (749)
++... |++.+.++..++...+..|||++.+++|.+-+-.+
T Consensus 391 ---------------~ll~~--~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~ 430 (439)
T 3fro_A 391 ---------------KALEL--SRSDLSKFRENCKKRAMSFSWEKSAERYVKAYTGS 430 (439)
T ss_dssp ---------------HHHHH--TTTTTHHHHHHHHHHHHTSCHHHHHHHHHHHHHTC
T ss_pred ---------------HHHHC--CHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH
T ss_conf ---------------99831--99999999999999876472999999999999999
Done!