RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= 004485
(749 letters)
>gnl|CDD|99996 cd04300, GT1_Glycogen_Phosphorylase, This is a family of
oligosaccharide phosphorylases. It includes yeast and
mammalian glycogen phosphorylases, plant starch/glucan
phosphorylase, as well as the maltodextrin
phosphorylases of bacteria. The members of this family
catalyze the breakdown of oligosaccharides into
glucose-1-phosphate units. They are important allosteric
enzymes in carbohydrate metabolism. The allosteric
control mechanisms of yeast and mammalian members of
this family are different from that of bacterial
members. The members of this family belong to the GT-B
structural superfamily of glycoslytransferases, which
have characteristic N- and C-terminal domains each
containing a typical Rossmann fold. The two domains have
high structural homology despite minimal sequence
homology. The large cleft that separates the two
domains includes the catalytic center and permits a high
degree of flexibility.
Length = 797
Score = 1230 bits (3186), Expect = 0.0
Identities = 416/751 (55%), Positives = 520/751 (69%), Gaps = 21/751 (2%)
Query: 1 MEFLQGRTLTNAIGSLDIQNAYADALNNLGHVLEEIAEQEKDAALGNGGLGRLASCFLDS 60
+EFL GR L N + +L + + +AL LG LE++ EQE DA LGNGGLGRLA+CFLDS
Sbjct: 60 LEFLMGRLLGNNLLNLGLYDEVREALAELGVDLEDLEEQEPDAGLGNGGLGRLAACFLDS 119
Query: 61 MATLNLPAWGYGLRYRYGLFKQKITKQGQEEVAEDWLEKFSPWEVVRHDVVFPVRFFGSV 120
+ATL LP +GYG+RY YGLFKQKI Q E+ ++WL +PWE+ R DV PVRF G V
Sbjct: 120 LATLGLPGYGYGIRYEYGLFKQKIVDGYQVELPDNWLRYGNPWEIRRPDVAVPVRFGGRV 179
Query: 121 MVNPNGTR---KWVGGEVVQAVAYDIPIPGYKTKNTISLRLWDAKASAEDFNLFQFNDGQ 177
+G R +WV GE V AV YD PIPGY T +LRLW A+AS E+F+L FN G
Sbjct: 180 EHYEDGGRLRVRWVDGETVLAVPYDTPIPGYGTNTVNTLRLWSAEAS-EEFDLDAFNRGD 238
Query: 178 YESAAQLHSRAQQICAVLYPGDSTEEGKLLRLKQQFFLCSASLQDMILRFKERKSGRQWS 237
Y A + +RA+ I VLYP DSTEEGK LRLKQQ+F SASLQD+I RFK K+ S
Sbjct: 239 YIRAVEEKNRAENISKVLYPNDSTEEGKELRLKQQYFFVSASLQDIIRRFK--KTHGPLS 296
Query: 238 EFPSKVAVQLNDTHPTLAIPELMRLLMDEEGLGWDEAWDITTRTVAYTNHTVLPEALEKW 297
EFP KVA+QLNDTHP LAIPELMR+L+DEEGL WDEAWDITT+T AYTNHT+LPEALEKW
Sbjct: 297 EFPDKVAIQLNDTHPALAIPELMRILVDEEGLDWDEAWDITTKTFAYTNHTLLPEALEKW 356
Query: 298 SQAVMWKLLPRHMEIIEEIDKRFIAMVRSTRSDLESKIPSMCILDNNPKKPVVRMANLCV 357
+ +LLPRH+EII EI++RF+ VR+ E +I M I++ +K VRMA+L +
Sbjct: 357 PVDLFERLLPRHLEIIYEINRRFLEEVRAKYPGDEDRIRRMSIIEEGGEK-QVRMAHLAI 415
Query: 358 VSAHTVNGVAQLHSDILKADLFADYVSLWPNKLQNKTNGITPRRWLRFCNPELSKIITKW 417
V +H+VNGVA LHS++LK +F D+ L+P K NKTNGITPRRWL NP LS +IT+
Sbjct: 416 VGSHSVNGVAALHSELLKETVFKDFYELYPEKFNNKTNGITPRRWLLQANPGLSALITET 475
Query: 418 LKTDQWVTNLDLLVGLRQFADNTELQAEWESAKMASKKHLADYIWRVTGVTIDPNSLFDI 477
+ D WVT+LD L L FAD+ E+ + K A+K+ LA YI + TGV +DP+SLFD+
Sbjct: 476 IGDD-WVTDLDQLKKLEPFADDPAFLKEFRAIKQANKERLAAYIKKTTGVEVDPDSLFDV 534
Query: 478 QVKRIHEYKRQLLNILGAIYRYKKLKEMSPQERKKTTPRTIMIGGKAFATYTNAKRIVKL 537
QVKRIHEYKRQLLN+L I+ Y ++KE PRT + GGKA Y AK I+KL
Sbjct: 535 QVKRIHEYKRQLLNVLHIIHLYNRIKENPN---ADIVPRTFIFGGKAAPGYYMAKLIIKL 591
Query: 538 VNDVGEVVNTDPEVNSYLKVVFVPNYNVSVAELLIPGSELSQHISTAGMEASGTSNMKFS 597
+N V +VVN DP+V LKVVF+PNYNVS+AE +IP ++LS+ ISTAG EASGT NMKF
Sbjct: 592 INAVADVVNNDPDVGDKLKVVFLPNYNVSLAEKIIPAADLSEQISTAGKEASGTGNMKFM 651
Query: 598 LNGCLIIGTLDGANVEIRQEIGEENFFLFGAVAEQVPKLRKEREDG--LFKPDPRFEEAK 655
LNG L IGTLDGANVEI +E+GEEN F+FG AE+V LR ++ DP
Sbjct: 652 LNGALTIGTLDGANVEIAEEVGEENIFIFGLTAEEVEALRANGYYPADYYEADPELRRVL 711
Query: 656 QFIRSGAFGSYD---YNPLLDSLEGNTGYGRGDYFLVGYDFPSYLEAQDRVDQAYKDQKK 712
I SG F D + PL+DSL D +LV DF SY++AQ++VD Y+DQ++
Sbjct: 712 DQIASGFFSPGDPGEFRPLVDSLLNG-----NDEYLVLADFESYVDAQEKVDALYRDQEE 766
Query: 713 WLKMSILSTAGSGKFSSDRTIAQYAKEIWNI 743
W + SIL+ A SGKFSSDRTI +YA++IWN+
Sbjct: 767 WARKSILNIARSGKFSSDRTIREYAEDIWNV 797
>gnl|CDD|233722 TIGR02093, P_ylase, glycogen/starch/alpha-glucan phosphorylases.
This family consists of phosphorylases. Members use
phosphate to break alpha 1,4 linkages between pairs of
glucose residues at the end of long glucose polymers,
releasing alpha-D-glucose 1-phosphate. The nomenclature
convention is to preface the name according to the
natural substrate, as in glycogen phosphorylase, starch
phosphorylase, maltodextrin phosphorylase, etc. Name
differences among these substrates reflect differences
in patterns of branching with alpha 1,6 linkages.
Members include allosterically regulated and unregulated
forms. A related family, TIGR02094, contains examples
known to act well on particularly small alpha 1,4
glucans, as may be found after import from exogenous
sources [Energy metabolism, Biosynthesis and degradation
of polysaccharides].
Length = 794
Score = 1189 bits (3078), Expect = 0.0
Identities = 415/751 (55%), Positives = 520/751 (69%), Gaps = 21/751 (2%)
Query: 1 MEFLQGRTLTNAIGSLDIQNAYADALNNLGHVLEEIAEQEKDAALGNGGLGRLASCFLDS 60
EFL GR L N + +L + + +AL LG LEEI E E DA LGNGGLGRLA+CFLDS
Sbjct: 57 AEFLMGRLLGNNLLNLGLYDEVKEALRELGLDLEEILEIENDAGLGNGGLGRLAACFLDS 116
Query: 61 MATLNLPAWGYGLRYRYGLFKQKITKQGQEEVAEDWLEKFSPWEVVRHDVVFPVRFFGSV 120
+ATL LPA GYG+RY YGLFKQKI Q E+ +DWL +PWE+ R D + VRF G V
Sbjct: 117 LATLGLPATGYGIRYEYGLFKQKIVDGWQVELPDDWLRYGNPWEIRRPDRSYEVRFGGRV 176
Query: 121 MVNPNG---TRKWVGGEVVQAVAYDIPIPGYKTKNTISLRLWDAKASAEDFNLFQFNDGQ 177
+ P+ +WV E V A+ YD+P+PGY+T +LRLW A+A E+F+L FN G
Sbjct: 177 ELQPDSDRLRPRWVPAETVLAIPYDVPVPGYRTDTVNTLRLWSAEAP-EEFDLDAFNAGD 235
Query: 178 YESAAQLHSRAQQICAVLYPGDSTEEGKLLRLKQQFFLCSASLQDMILRFKERKSGRQWS 237
Y A + +RA+ I VLYP DST EGK LRLKQQ+F SASLQD+I R E + S
Sbjct: 236 YYEAVEEKNRAENISRVLYPNDSTYEGKELRLKQQYFFVSASLQDIIRRHLE--THPDLS 293
Query: 238 EFPSKVAVQLNDTHPTLAIPELMRLLMDEEGLGWDEAWDITTRTVAYTNHTVLPEALEKW 297
+FP KVA+QLNDTHP LAIPELMRLL+DEEG+ WDEAWDITT+T AYTNHT+LPEALEKW
Sbjct: 294 DFPKKVAIQLNDTHPALAIPELMRLLIDEEGMDWDEAWDITTKTFAYTNHTLLPEALEKW 353
Query: 298 SQAVMWKLLPRHMEIIEEIDKRFIAMVRSTRSDLESKIPSMCILDNNPKKPVVRMANLCV 357
+ KLLPRH+EII EI++RF+A + + E+KI M I++ K VRMANL +
Sbjct: 354 PVDLFQKLLPRHLEIIYEINRRFLAELAAKGPGDEAKIRRMSIIEEGQSK-RVRMANLAI 412
Query: 358 VSAHTVNGVAQLHSDILKADLFADYVSLWPNKLQNKTNGITPRRWLRFCNPELSKIITKW 417
V +H+VNGVA LH+++LK DL D+ L+P K NKTNGITPRRWLR NP LS ++T+
Sbjct: 413 VGSHSVNGVAALHTELLKEDLLKDFYELYPEKFNNKTNGITPRRWLRLANPGLSALLTET 472
Query: 418 LKTDQWVTNLDLLVGLRQFADNTELQAEWESAKMASKKHLADYIWRVTGVTIDPNSLFDI 477
+ D W+T+LDLL L +AD++E E+ K A+K+ LA YI TGV +DPNS+FD+
Sbjct: 473 IG-DDWLTDLDLLKKLEPYADDSEFLEEFRQVKQANKQRLAAYIKEHTGVEVDPNSIFDV 531
Query: 478 QVKRIHEYKRQLLNILGAIYRYKKLKEMSPQERKKTTPRTIMIGGKAFATYTNAKRIVKL 537
QVKR+HEYKRQLLN+L IY Y ++KE P++ PRT++ GGKA Y AK I+KL
Sbjct: 532 QVKRLHEYKRQLLNVLHVIYLYNRIKEDPPKDI---VPRTVIFGGKAAPGYHMAKLIIKL 588
Query: 538 VNDVGEVVNTDPEVNSYLKVVFVPNYNVSVAELLIPGSELSQHISTAGMEASGTSNMKFS 597
+N V EVVN DP V LKVVFVPNYNVS+AEL+IP ++LS+ ISTAG EASGT NMKF
Sbjct: 589 INSVAEVVNNDPAVGDKLKVVFVPNYNVSLAELIIPAADLSEQISTAGKEASGTGNMKFM 648
Query: 598 LNGCLIIGTLDGANVEIRQEIGEENFFLFGAVAEQVPKLRKE--REDGLFKPDPRFEEAK 655
LNG L IGTLDGANVEIR+E+G EN F+FG E+V LR++ ++ DP +
Sbjct: 649 LNGALTIGTLDGANVEIREEVGAENIFIFGLTVEEVEALREKGYNPREYYEADPELKRVL 708
Query: 656 QFIRSGAFG---SYDYNPLLDSLEGNTGYGRGDYFLVGYDFPSYLEAQDRVDQAYKDQKK 712
I SG F + PL DSL + GD F V DF +Y++AQ+RVD Y+DQ +
Sbjct: 709 DLISSGTFSPGDPGLFRPLYDSLLNH-----GDPFFVLADFAAYVDAQERVDALYRDQLE 763
Query: 713 WLKMSILSTAGSGKFSSDRTIAQYAKEIWNI 743
W K SIL+ A SGKFSSDRTI +YAKEIW++
Sbjct: 764 WTKKSILNIANSGKFSSDRTIREYAKEIWHV 794
>gnl|CDD|215868 pfam00343, Phosphorylase, Carbohydrate phosphorylase. The members
of this family catalyze the formation of glucose
1-phosphate from one of the following polyglucoses;
glycogen, starch, glucan or maltodextrin.
Length = 712
Score = 1179 bits (3051), Expect = 0.0
Identities = 431/726 (59%), Positives = 524/726 (72%), Gaps = 19/726 (2%)
Query: 25 ALNNLGHVLEEIAEQEKDAALGNGGLGRLASCFLDSMATLNLPAWGYGLRYRYGLFKQKI 84
AL LG LEE+ E+E DA LGNGGLGRLA+CFLDS+ATL LPA+GYG+RY YG+F+QKI
Sbjct: 1 ALKELGLNLEELLEEENDAGLGNGGLGRLAACFLDSLATLGLPAYGYGIRYEYGMFEQKI 60
Query: 85 TKQGQEEVAEDWLEKFSPWEVVRHDVVFPVRFFGSVMVNPNGTRKWVGGEVVQAVAYDIP 144
Q E+ +DWLE +PWE+ R DV +PVRF+G V KW EVV AVAYD P
Sbjct: 61 VDGWQVELPDDWLEYGNPWEIERPDVRYPVRFYGKVEEKEGRKTKWDDTEVVLAVAYDTP 120
Query: 145 IPGYKTKNTISLRLWDAKASAEDFNLFQFNDGQYESAAQLHSRAQQICAVLYPGDSTEEG 204
IPGY+T NT +LRLW AKAS E+FNL FNDG Y +A + +RA+ I VLYP D+T EG
Sbjct: 121 IPGYRTNNTNTLRLWSAKAS-EEFNLADFNDGDYLAAVEDKNRAENISRVLYPNDNTFEG 179
Query: 205 KLLRLKQQFFLCSASLQDMILRFKERKSGRQWSEFPSKVAVQLNDTHPTLAIPELMRLLM 264
K LRLKQQ+FL SA+LQD+I RFK KS + SEFP KVA+QLNDTHPTLAIPELMR+L+
Sbjct: 180 KELRLKQQYFLVSATLQDIIRRFK--KSHKSLSEFPDKVAIQLNDTHPTLAIPELMRILI 237
Query: 265 DEEGLGWDEAWDITTRTVAYTNHTVLPEALEKWSQAVMWKLLPRHMEIIEEIDKRFIAMV 324
DEEGL WDEAW+ITT+T AYTNHTVLPEALEKW ++ KLLPRH++II EI++RF+ +V
Sbjct: 238 DEEGLSWDEAWEITTKTFAYTNHTVLPEALEKWPVHLVEKLLPRHLQIIYEINERFLKLV 297
Query: 325 RSTRSDLESKIPSMCILDNNPKKPVVRMANLCVVSAHTVNGVAQLHSDILKADLFADYVS 384
E K+ M I+D K VRMA+L +V +H VNGVA LHSD++K DLF D+
Sbjct: 298 WEKWPGDEDKLRRMSIIDEGAGK-RVRMAHLAIVGSHAVNGVAALHSDLVKKDLFPDFHE 356
Query: 385 LWPNKLQNKTNGITPRRWLRFCNPELSKIITKWLKTDQWVTNLDLLVGLRQFADNTELQA 444
LWPNK QNKTNGITPRRWL NP L+ IITK L D+WVT+L+ L+ L FAD+
Sbjct: 357 LWPNKFQNKTNGITPRRWLLQANPGLAAIITKSLG-DEWVTDLEQLIKLEPFADDPAFIE 415
Query: 445 EWESAKMASKKHLADYIWRVTGVTIDPNSLFDIQVKRIHEYKRQLLNILGAIYRYKKLKE 504
EW K A+K+ LA+YI + TGV ++PN+LFD+QVKRIHEYKRQLLN+L IYRY ++KE
Sbjct: 416 EWAEIKQANKQRLAEYIEKETGVVVNPNALFDVQVKRIHEYKRQLLNVLHVIYRYNRIKE 475
Query: 505 MSPQERKKTTPRTIMIGGKAFATYTNAKRIVKLVNDVGEVVNTDPEVNSYLKVVFVPNYN 564
P K PR ++ GGKA Y AKRI+KL+N V +VVN DP V LKVVF+PNY
Sbjct: 476 DPP---KDVVPRVVIFGGKAAPGYYMAKRIIKLINSVADVVNNDPAVGDKLKVVFLPNYR 532
Query: 565 VSVAELLIPGSELSQHISTAGMEASGTSNMKFSLNGCLIIGTLDGANVEIRQEIGEENFF 624
VS+AE +IP S++S+ ISTAG EASGTSNMKF+LNG L IGTLDGANVEI +E+GEEN F
Sbjct: 533 VSLAEKIIPASDISEQISTAGTEASGTSNMKFALNGALTIGTLDGANVEIAEEVGEENIF 592
Query: 625 LFGAVAEQVPKLRKE--REDGLFKPDPRFEEAKQFIRSGAFG---SYDYNPLLDSLEGNT 679
+FG AE+V LRK+ R +K DPR + I SG F + +LDSL
Sbjct: 593 IFGLTAEEVEALRKKGYRSREYYKKDPRLRQVLDQIISGFFSPEDPDRFRDILDSL---- 648
Query: 680 GYGRGDYFLVGYDFPSYLEAQDRVDQAYKDQKKWLKMSILSTAGSGKFSSDRTIAQYAKE 739
GDY+LV DFPSY++AQ RVD+ YKD++ W K SIL+ A SGKFSSDRTI +YAK
Sbjct: 649 --QGGDYYLVFADFPSYVDAQKRVDELYKDREAWTKKSILNIANSGKFSSDRTIKEYAKR 706
Query: 740 IWNITE 745
IW I
Sbjct: 707 IWGIEP 712
>gnl|CDD|237881 PRK14985, PRK14985, maltodextrin phosphorylase; Provisional.
Length = 798
Score = 798 bits (2064), Expect = 0.0
Identities = 341/747 (45%), Positives = 467/747 (62%), Gaps = 24/747 (3%)
Query: 1 MEFLQGRTLTNAIGSLDIQNAYADALNNLGHVLEEIAEQEKDAALGNGGLGRLASCFLDS 60
MEFL GR N + +L + D L L ++ E+E D ALGNGGLGRLA+CFLDS
Sbjct: 66 MEFLIGRLTGNNLLNLGWYDDVQDVLKAYDINLTDLLEEETDPALGNGGLGRLAACFLDS 125
Query: 61 MATLNLPAWGYGLRYRYGLFKQKITKQGQEEVAEDWLEKFSPWEVVRHDVVFPVRF-FGS 119
MAT+ PA GYGL Y+YGLF+Q Q E +DW PW RH+ V+ G
Sbjct: 126 MATVGQPATGYGLNYQYGLFRQSFVDGKQVEAPDDWHRDSYPW--FRHNEALDVQVGIGG 183
Query: 120 VMVNPNGTRKWVGGEVVQAVAYDIPIPGYKTKNTISLRLWDAKASAEDFNLFQFNDGQYE 179
+ +G +W + A+D+P+ GY+ LRLW A A F+L +FNDG +
Sbjct: 184 KVTKQDGRERWEPAFTITGEAWDLPVVGYRNGVAQPLRLWQAT-HAHPFDLTKFNDGDFL 242
Query: 180 SAAQLHSRAQQICAVLYPGDSTEEGKLLRLKQQFFLCSASLQDMILRFKERKSGRQWSEF 239
A Q A+++ VLYP D+ GK LRL QQ+F C+ S+ D ILR + +GR+ E
Sbjct: 243 RAEQQGIDAEKLTKVLYPNDNHTAGKKLRLMQQYFQCACSVAD-ILR-RHHLAGRKLHEL 300
Query: 240 PSKVAVQLNDTHPTLAIPELMRLLMDEEGLGWDEAWDITTRTVAYTNHTVLPEALEKWSQ 299
P +QLNDTHPT+AIPEL+R+L+DE L WD+AW IT++T AYTNHT++PEALE W +
Sbjct: 301 PDYEVIQLNDTHPTIAIPELLRVLLDEHQLSWDDAWAITSKTFAYTNHTLMPEALECWDE 360
Query: 300 AVMWKLLPRHMEIIEEIDKRFIAMVRSTRSDLESKIPSMCILDNNPKKPVVRMANLCVVS 359
++ LLPRHM+II+EI+ RF +V T + + ++ + VRMANLCVVS
Sbjct: 361 KLVKSLLPRHMQIIKEINTRFKTLVEKTWPGDKKVWAKLAVVHDKQ----VRMANLCVVS 416
Query: 360 AHTVNGVAQLHSDILKADLFADYVSLWPNKLQNKTNGITPRRWLRFCNPELSKIITKWLK 419
VNGVA LHSD++ DLF +Y LWPNK N TNGITPRRW++ CNP L+ ++ K LK
Sbjct: 417 GFAVNGVAALHSDLVVKDLFPEYHQLWPNKFHNVTNGITPRRWIKQCNPALAALLDKTLK 476
Query: 420 TDQWVTNLDLLVGLRQFADNTELQAEWESAKMASKKHLADYIWRVTGVTIDPNSLFDIQV 479
+ W +LD L+ L ++AD+ + ++ K A+K LA+++ + TG+ I+P ++FD+Q+
Sbjct: 477 KE-WANDLDQLINLEKYADDAAFRQQYREIKQANKVRLAEFVKQRTGIEINPQAIFDVQI 535
Query: 480 KRIHEYKRQLLNILGAIYRYKKLKEMSPQERKKTTPRTIMIGGKAFATYTNAKRIVKLVN 539
KR+HEYKRQ LN+L + YK+++E +PQ PR + G KA Y AK I+ +N
Sbjct: 536 KRLHEYKRQHLNLLHILALYKEIRE-NPQ--ADRVPRVFLFGAKAAPGYYLAKNIIFAIN 592
Query: 540 DVGEVVNTDPEVNSYLKVVFVPNYNVSVAELLIPGSELSQHISTAGMEASGTSNMKFSLN 599
V EV+N DP V LKVVF+P+Y VS AELLIP +++S+ ISTAG EASGT NMK +LN
Sbjct: 593 KVAEVINNDPLVGDKLKVVFLPDYCVSAAELLIPAADISEQISTAGKEASGTGNMKLALN 652
Query: 600 GCLIIGTLDGANVEIRQEIGEENFFLFGAVAEQVPKLRKERED--GLFKPDPRFEEAKQF 657
G L +GTLDGANVEI +++GEEN F+FG EQV L + D K D + +
Sbjct: 653 GALTVGTLDGANVEIAEQVGEENIFIFGHTVEQVKALLAKGYDPVKWRKKDKVLDAVLKE 712
Query: 658 IRSGAFGSYD---YNPLLDSLEGNTGYGRGDYFLVGYDFPSYLEAQDRVDQAYKDQKKWL 714
+ SG + D ++ +L SL+ GD +LV DF +Y+EAQ +VD Y+DQ+ W
Sbjct: 713 LESGKYSDGDKHAFDQMLHSLKQG-----GDPYLVLADFAAYVEAQKQVDALYRDQEAWT 767
Query: 715 KMSILSTAGSGKFSSDRTIAQYAKEIW 741
+ +IL+TA G FSSDR+I Y IW
Sbjct: 768 RAAILNTARCGMFSSDRSIRDYQARIW 794
>gnl|CDD|223136 COG0058, GlgP, Glucan phosphorylase [Carbohydrate transport and
metabolism].
Length = 750
Score = 760 bits (1964), Expect = 0.0
Identities = 329/747 (44%), Positives = 434/747 (58%), Gaps = 71/747 (9%)
Query: 1 MEFLQGRTLTNAIGSLDIQNAYADALNNLGHVLEEIAEQEKDAALGNGGLGRLASCFLDS 60
MEFL GR L N + +L I + +AL LG+ L E E E D LG GGLGRLA CFLDS
Sbjct: 69 MEFLIGRLLGNNLWNLGIYDDVQEALKELGYFLMEFGEHESDPGLG-GGLGRLAGCFLDS 127
Query: 61 MATLNLPAWGYGLRYRYGLFKQKITKQGQEEVAEDWLEKFSPWEVVRHDVVFPVRFFGSV 120
A L LP GYGLRYRYG F+Q Q E+ ++WL+ +PWE +R
Sbjct: 128 AADLGLPLTGYGLRYRYGYFRQSDVDGWQVELPDEWLKYGNPWEFLRDA----------- 176
Query: 121 MVNPNGTRKWVGGEVVQAVAYDIPIPGYKTKNTISLRLWDAKASAEDFNLFQFNDGQYES 180
+ V YD+P+PGY ++LRLW A+ L FN G+ ++
Sbjct: 177 ----------------EGVPYDVPVPGYDN-RVVTLRLWQAQVGRVPLYLLDFNVGENKN 219
Query: 181 AAQLHSRAQQICAVLYPGDSTEEGKLLRLKQQFFLCSASLQDMILRFKERKSGRQWSEFP 240
A+ I VLYPGDS E LRLKQ++FL SA +QD++ R
Sbjct: 220 ------DARNITRVLYPGDSKE----LRLKQEYFLGSAGVQDILARGH--LEHHDLDVLA 267
Query: 241 SKVAVQLNDTHPTLAIPELMRLLMDEEGLGWDEAWDITTRTVAYTNHTVLPEALEKWSQA 300
LNDTHP LAIPELMRLL+DEEGL WDEAW+I +T YTNHT LPEALE W
Sbjct: 268 DH----LNDTHPALAIPELMRLLIDEEGLSWDEAWEIVRKTFVYTNHTPLPEALETWPVE 323
Query: 301 VMWKLLPRHMEIIEEIDKRFIAMVRSTRSDLESKIPSMCILDNNPKKPVVRMANLCVVSA 360
+ KLLPRH++II EI+ RF+ VR L I ++ V MA L +V +
Sbjct: 324 LFKKLLPRHLQIIYEINARFLPEVRLL--YLGDLIRRGSPIEE------VNMAVLALVGS 375
Query: 361 HTVNGVAQLHSDILKADLFADYVSLWPNKLQNKTNGITPRRWLRFCNPELSKIITKWLKT 420
H+VNGV++LHS++ K FAD+ L+P K+ N TNGITPRRWL NP L+ ++ + +
Sbjct: 376 HSVNGVSKLHSELSKKMWFADFHGLYPEKINNVTNGITPRRWLAPANPGLADLLDEKIG- 434
Query: 421 DQWVTNLDLLVGLRQFADNTELQAEWESAKMASKKHLADYIWRVTGVTIDPNSLFDIQVK 480
D+W+ +LD+L L FAD+ + K +KK LA+ I TG+ +DPN+LFD Q +
Sbjct: 435 DEWLNDLDILDELLWFADDKAFRELIAEIKRENKKRLAEEIADRTGIEVDPNALFDGQAR 494
Query: 481 RIHEYKRQLLNILGAIYRYKKLKEMSPQERKKTTPRTIMI-GGKAFATYTNAKRIVKLVN 539
RIHEYKRQLLN+L Y+ LKE PR +I GKA AK I+KL+N
Sbjct: 495 RIHEYKRQLLNLLDIERLYRILKE-------DWVPRVQIIFAGKAHPADYAAKEIIKLIN 547
Query: 540 DVGEVVNTDPEVNSYLKVVFVPNYNVSVAELLIPGSELSQHISTAGMEASGTSNMKFSLN 599
DV +V+N + LKVVF+PNY+VS+AELLIP +++ + I TAG EASGTSNMK +LN
Sbjct: 548 DVADVIN------NKLKVVFLPNYDVSLAELLIPAADVWEQIPTAGKEASGTSNMKAALN 601
Query: 600 GCLIIGTLDGANVEIRQEIGEENFFLFGAVAEQVPKLRKERED---GLFKPDPRFEEAKQ 656
G L +GTLDGANVEI + +G EN ++FG E+V LR + D ++ + +
Sbjct: 602 GALTLGTLDGANVEIYEHVGGENGWIFGETVEEVDALRADGYDPNALYYELENEVKPVLD 661
Query: 657 FIRSGAFGSYDYNPLLDSLEGNTGYGRGDYFLVGYDFPSYLEAQDRVDQAYKDQKKWLKM 716
I G F + + ++ D +V YDF +Y+ AQ+ VD Y+DQ+ W K
Sbjct: 662 EIIDGRFSPGWKSRFKNLIDSLLPKFGTDRMMVLYDFKAYVPAQEEVDALYRDQEAWTKK 721
Query: 717 SILSTAGSGKFSSDRTIAQYAKEIWNI 743
+IL+ A SG FSSDRTI +YA EIW+I
Sbjct: 722 AILNIANSGLFSSDRTIREYAGEIWHI 748
>gnl|CDD|184948 PRK14986, PRK14986, glycogen phosphorylase; Provisional.
Length = 815
Score = 754 bits (1949), Expect = 0.0
Identities = 346/755 (45%), Positives = 491/755 (65%), Gaps = 25/755 (3%)
Query: 1 MEFLQGRTLTNAIGSLDIQNAYADALNNLGHVLEEIAEQEKDAALGNGGLGRLASCFLDS 60
MEFL GRTL+NA+ SL I + AL +G LEE+ ++E D LGNGGLGRLA+CFLDS
Sbjct: 77 MEFLIGRTLSNALLSLGIYDDVQGALEAMGLDLEELIDEENDPGLGNGGLGRLAACFLDS 136
Query: 61 MATLNLPAWGYGLRYRYGLFKQKITKQGQEEVAEDWLEKFSPWEVVRHDVVFPVRFFGSV 120
+ATL LP GYG+RY YG+FKQ I Q+E + WLE +PWE RH+ + VRF G +
Sbjct: 137 LATLGLPGRGYGIRYDYGMFKQNIVNGRQKESPDYWLEYGNPWEFKRHNTRYKVRFGGRI 196
Query: 121 MVNPNGTRKWVGGEVVQAVAYDIPIPGYKTKNTISLRLWDAKASAEDFNLFQFNDGQYES 180
TR W+ E + AVAYD IPGY T T +LRLW A+AS+E NL +FN G Y +
Sbjct: 197 QQEGKKTR-WIETEEILAVAYDQIIPGYDTDATNTLRLWSAQASSE-INLGKFNQGDYFA 254
Query: 181 AAQLHSRAQQICAVLYPGDSTEEGKLLRLKQQFFLCSASLQDMILRFKERKSGRQWSEFP 240
A + + ++ + VLYP DST G+ LRL+Q++FL SA++QD++ R + + +
Sbjct: 255 AVEDKNHSENVSRVLYPDDSTYSGRELRLRQEYFLVSATVQDILSR--HYQLHKTYDNLA 312
Query: 241 SKVAVQLNDTHPTLAIPELMRLLMDEEGLGWDEAWDITTRTVAYTNHTVLPEALEKWSQA 300
K+A+ LNDTHP L+IPELMRLL+DE WD+A+++ + +YTNHT++ EALE W
Sbjct: 313 DKIAIHLNDTHPVLSIPELMRLLIDEHKFSWDDAFEVCCQVFSYTNHTLMSEALETWPVD 372
Query: 301 VMWKLLPRHMEIIEEIDKRFIAMVRSTRSDLESKIPSMCILD-NNPKKPVVRMANLCVVS 359
++ K+LPRH++II EI+ F+ ++ + + I+D +N ++ VRMA L VV
Sbjct: 373 MLGKILPRHLQIIFEINDYFLKTLQEQYPNDTDLLGRASIIDESNGRR--VRMAWLAVVV 430
Query: 360 AHTVNGVAQLHSDILKADLFADYVSLWPNKLQNKTNGITPRRWLRFCNPELSKIITKWLK 419
+H VNGV++LHS+++ LFAD+ ++P + N TNG+TPRRWL NP LS ++ + +
Sbjct: 431 SHKVNGVSELHSNLMVQSLFADFAKIFPGRFCNVTNGVTPRRWLALANPSLSAVLDEHIG 490
Query: 420 TDQWVTNLDLLVGLRQFADNTELQAEWESAKMASKKHLADYIWRVTGVTIDPNSLFDIQV 479
W T+L L L+Q D + AK+ +KK LA+YI + V ++P +LFD+Q+
Sbjct: 491 R-TWRTDLSQLSELKQHCDYPMVNHAVRQAKLENKKRLAEYIAQQLNVVVNPKALFDVQI 549
Query: 480 KRIHEYKRQLLNILGAIYRYKKLKEMSPQERKKTTPRTIMIGGKAFATYTNAKRIVKLVN 539
KRIHEYKRQL+N+L I RY ++K + PR + GKA + Y AK I+ L+N
Sbjct: 550 KRIHEYKRQLMNVLHVITRYNRIKADPDAKW---VPRVNIFAGKAASAYYMAKHIIHLIN 606
Query: 540 DVGEVVNTDPEVNSYLKVVFVPNYNVSVAELLIPGSELSQHISTAGMEASGTSNMKFSLN 599
DV +V+N DP++ LKVVF+PNY+VS+A+L+IP ++LS+ IS AG EASGTSNMKF+LN
Sbjct: 607 DVAKVINNDPQIGDKLKVVFIPNYSVSLAQLIIPAADLSEQISLAGTEASGTSNMKFALN 666
Query: 600 GCLIIGTLDGANVEIRQEIGEENFFLFGAVAEQVPKLRKE----REDGLFKPDPRFEEAK 655
G L IGTLDGANVE+ + +GEEN F+FG AE+V LR++ RE ++ D +
Sbjct: 667 GALTIGTLDGANVEMLEHVGEENIFIFGNTAEEVEALRRQGYKPRE--YYEKDEELHQVL 724
Query: 656 QFIRSGAFGSYD---YNPLLDSLEGNTGYGRGDYFLVGYDFPSYLEAQDRVDQAYKDQKK 712
I SG F + Y L+DSL GD++ V D+ SY++ QD+VD+ Y++Q++
Sbjct: 725 TQIGSGVFSPEEPGRYRDLVDSL-----INFGDHYQVLADYRSYVDCQDKVDELYRNQEE 779
Query: 713 WLKMSILSTAGSGKFSSDRTIAQYAKEIWNITECR 747
W + ++L+ A G FSSDRTI +YA EIW+I R
Sbjct: 780 WTRKAMLNIANMGYFSSDRTIKEYADEIWHIDPVR 814
>gnl|CDD|233723 TIGR02094, more_P_ylases, alpha-glucan phosphorylases. This family
consists of known phosphorylases, and homologs believed
to share the function of using inorganic phosphate to
cleave an alpha 1,4 linkage between the terminal glucose
residue and the rest of the polymer (maltodextrin,
glycogen, etc.). The name of the glucose storage polymer
substrate, and therefore the name of this enzyme,
depends on the chain lengths and branching patterns. A
number of the members of this family have been shown to
operate on small maltodextrins, as may be obtained by
utilization of exogenous sources. This family represents
a distinct clade from the related family modeled by
TIGR02093/pfam00343.
Length = 601
Score = 120 bits (302), Expect = 3e-28
Identities = 128/589 (21%), Positives = 225/589 (38%), Gaps = 122/589 (20%)
Query: 48 GGLGRLASCFLDSMATLNLPAWGYGLRYRYGLFKQKITKQG-QEEVAEDWLEKFSPWEVV 106
GGLG LA L S + L LP GL Y+ G F+Q++ + G Q+E + + P E V
Sbjct: 19 GGLGVLAGDHLKSASDLGLPLVAVGLLYKQGYFRQRLDEDGWQQEAYPNNDFESLPIEKV 78
Query: 107 RHDVVFPVRFFGSVMVNPNGTRKWVGGEVVQAVAYDIPIPGYKTKNTISLRLWDAKASAE 166
G+ ++ + I G + ++W +
Sbjct: 79 LDT----------------------DGKWLKI---SVRIRG----RDVYAKVWRVQVGRV 109
Query: 167 DFNLFQFNDGQYESAAQLHSRAQQICAVLYPGDSTEEGKLLRLKQQFFLCSASLQDMILR 226
L D ++ + I LY GD +R+ Q+ L ++ +
Sbjct: 110 PLYLL---DTNIPENSEDD---RWITGRLYGGDKE-----MRIAQEIVLGIGGVR-ALRA 157
Query: 227 FKERKSGRQWSEFPSKVAVQLNDTHPTLAIPELMRLLMDEEGLGWDEAWDITTRTVAYTN 286
LN+ H E +R L+ +GL ++EAW+ ++ +T
Sbjct: 158 LGIDPDV-----------YHLNEGHAAFVTLERIRELI-AQGLSFEEAWEAVRKSSLFTT 205
Query: 287 HTVLPEALEKWSQAVMWK-LLPRHMEIIEEIDKRFIAMVRSTRSDLESKIPSMCILDNNP 345
HT +P + + + +M K + ++ +A+ R D
Sbjct: 206 HTPVPAGHDVFPEDLMRKYFGDYAANLGLPREQ-LLALGRENPDD--------------- 249
Query: 346 KKPVVRMANLCVVSAHTVNGVAQLHSDILKADLFADYVSLWPNKLQNK------TNGITP 399
M L + + NGV++LH ++ ++ L+P + + TNG+
Sbjct: 250 -PEPFNMTVLALRLSRIANGVSKLHGEV-SRKMWQF---LYPGYEEEEVPIGYVTNGVHN 304
Query: 400 RRWLRFCNPELSKIITKWLKTD--QWVTNLDLLVGLRQFADNTELQAEWESAKMASKKHL 457
W PEL + ++L + + + + +L + D EL WE + K L
Sbjct: 305 PTW---VAPELRDLYERYLGENWRELLADEELWEAIDDIPDE-EL---WE-VHLKLKARL 356
Query: 458 ADYIWRVTGV-----------------TIDPNSLFDIQVKRIHEYKRQLLNILGAIYRYK 500
DYI R +DP+ L +R YKR L I + R
Sbjct: 357 IDYIRRRLRERWLRRGADAAILMATDRFLDPDVLTIGFARRFATYKRADL-IFRDLERLA 415
Query: 501 KLKEMSPQERKKTTPRTIMIGGKAFATYTNAKRIVKLVNDVGEVVNTDPEVNSYLKVVFV 560
++ ++ ER P I+ GKA K I++ + + + PE ++VF+
Sbjct: 416 RI--LNNPER----PVQIVFAGKAHPADGEGKEIIQRIVEFSK----RPEFRG--RIVFL 463
Query: 561 PNYNVSVAELLIPGSELSQHISTAGMEASGTSNMKFSLNGCLIIGTLDG 609
NY++++A L+ G ++ + +EASGTS MK ++NG L + LDG
Sbjct: 464 ENYDINLARYLVSGVDVWLNNPRRPLEASGTSGMKAAMNGVLNLSILDG 512
>gnl|CDD|99995 cd04299, GT1_Glycogen_Phosphorylase_like, This family is most
closely related to the oligosaccharide phosphorylase
domain family and other unidentified sequences.
Oligosaccharide phosphorylase catalyzes the breakdown of
oligosaccharides into glucose-1-phosphate units. They
are important allosteric enzymes in carbohydrate
metabolism. The members of this family are found in
bacteria and Archaea.
Length = 778
Score = 106 bits (267), Expect = 1e-23
Identities = 141/608 (23%), Positives = 234/608 (38%), Gaps = 158/608 (25%)
Query: 48 GGLGRLASCFLDSMATLNLPAWGYGLRYRYGLFKQKITKQGQEEVAEDWLEKFSPWEVVR 107
GGLG LA L + + L LP G GL YR G F+Q++ G W+
Sbjct: 106 GGLGILAGDHLKAASDLGLPLVGVGLLYRQGYFRQRLDADG--------------WQQET 151
Query: 108 HDV-------VFPVRFFGSVMVNPNGTRKWVGGEVVQAVAYDIPIPGYKTKNTISLRLWD 160
+ V + PVR + +G V + +PG T+ R+W
Sbjct: 152 YPVNDFEQLPLEPVR-------DADGEPVRV----------SVELPGR----TVYARVWK 190
Query: 161 AKASAEDFNLFQFNDGQYESAAQLHSRAQQICAVLYPGDSTEEGKLLRLKQQFFLCSASL 220
A+ L + + + I LY GD R++Q+ L
Sbjct: 191 AQVGRVPLYLLDTDIPENSPDDR------GITDRLYGGDQE-----TRIQQEILL----- 234
Query: 221 QDMILRFKERKSG-------RQWSEFPSKVAVQLNDTHPTLAIPELMRLLMDEEGLGWDE 273
G R P+ +N+ H E +R LM E GL +DE
Sbjct: 235 ------------GIGGVRALRALGIKPT--VYHMNEGHAAFLGLERIRELMAEGGLSFDE 280
Query: 274 AWDITTRTVAYTNHTVLPEALEKWSQAVMWKLL---PRHMEIIEEIDKRFIAMVRSTRSD 330
A + + +T HT +P +++ ++ + R + + + RF+A+ R D
Sbjct: 281 ALEAVRASTVFTTHTPVPAGHDRFPPDLVERYFGPYARELGLSRD---RFLALGRENPGD 337
Query: 331 LESKIPSMCILDNNPKKPVVRMANLCVVSAHTVNGVAQLHSDILKADLFADYVSLWP--- 387
MA L + A NGV++LH ++ ++FA LWP
Sbjct: 338 ---------------DPEPFNMAVLALRLAQRANGVSRLHGEV-SREMFAG---LWPGFP 378
Query: 388 ---NKLQNKTNGITPRRWLRFCNPELSKIITKWLKTDQWVTNLDLLVGLRQFADNT---E 441
+ + TNG+ W+ PE+ ++ ++L W L + D+ E
Sbjct: 379 VEEVPIGHVTNGVHVPTWV---APEMRELYDRYL-GGDW-RERPTDPELWEAVDDIPDEE 433
Query: 442 LQAEWESAKMASKKHLADYI-------WRVTGVT----------IDPNSL---FDIQVKR 481
L WE + ++ L +++ W G + +DPN L F +R
Sbjct: 434 L---WE-VRQQLRRRLIEFVRRRLRRQWLRRGASAEEIGEADDVLDPNVLTIGF---ARR 486
Query: 482 IHEYKRQLLNILGAIYRYKKLKEMSPQERKKTTPRTIMIGGKAFATYTNAKRIVKLVNDV 541
YKR L +L R K+L ++ ER P + GKA K +++ + +
Sbjct: 487 FATYKRATL-LLRDPERLKRL--LNDPER----PVQFIFAGKAHPADEPGKELIQEIVEF 539
Query: 542 GEVVNTDPEVNSYLKVVFVPNYNVSVAELLIPGSELSQHISTAGMEASGTSNMKFSLNGC 601
PE ++VF+ +Y++++A L+ G ++ + +EASGTS MK +LNG
Sbjct: 540 SR----RPEFRG--RIVFLEDYDMALARHLVQGVDVWLNTPRRPLEASGTSGMKAALNGG 593
Query: 602 LIIGTLDG 609
L + LDG
Sbjct: 594 LNLSVLDG 601
>gnl|CDD|223265 COG0187, GyrB, Type IIA topoisomerase (DNA gyrase/topo II,
topoisomerase IV), B subunit [DNA replication,
recombination, and repair].
Length = 635
Score = 32.9 bits (76), Expect = 0.82
Identities = 20/79 (25%), Positives = 32/79 (40%), Gaps = 16/79 (20%)
Query: 474 LFDIQVKRIHEY------KRQLLNILGA-----IYRYKKLKEMSPQERKKTT--PRTIMI 520
L+ ++ + Y +LL LG I RYK L EM+P + +TT P T
Sbjct: 534 LYKVKKGKKTFYAYDDEELEKLLERLGKKKGYEIQRYKGLGEMNPDQLWETTMDPETRR- 592
Query: 521 GGKAFATYTNAKRIVKLVN 539
T +A ++ +
Sbjct: 593 --LLQVTIEDADEADEIFS 609
>gnl|CDD|227441 COG5110, RPN1, 26S proteasome regulatory complex component
[Posttranslational modification, protein turnover,
chaperones].
Length = 881
Score = 31.4 bits (71), Expect = 2.1
Identities = 34/187 (18%), Positives = 61/187 (32%), Gaps = 29/187 (15%)
Query: 394 TNGITPRRWLRFCNPELSKIITKWLKTDQWVTNLDLLVGLRQFADNTELQAEWESAKMAS 453
T P ++LR +L +I KWL+ ++ D+L L
Sbjct: 83 TAVPKPLKFLRPNYLDLLEIYDKWLEGNKKRWLADILSALCMVYSEN------------G 130
Query: 454 KKHLADYIWRVTGVTIDPNSLFDIQVKRIHEYKRQLLNILGAIYRYKKLKEMSPQERKKT 513
K Y R+ G ID HEY R L + + + + +
Sbjct: 131 KHKSLAY--RLEGNIIDLKEWG-------HEYVRHLAGEIAEVKNDQNEMDAPSFADTRD 181
Query: 514 TPRTIMIGGKAFATYTNAKRIVKLVNDVGEVVNTDP--EVNSYLKVVFVPNYNVSVAELL 571
I+ F + + L+ +VG + + ++Y +V Y LL
Sbjct: 182 LGLEIV---PFFLKHNAEFDAIDLLVEVGGIEKVLDFVDTHNYNRVCL---YLEDCVPLL 235
Query: 572 IPGSELS 578
P +++
Sbjct: 236 PPPEDVA 242
>gnl|CDD|223945 COG1013, PorB, Pyruvate:ferredoxin oxidoreductase and related
2-oxoacid:ferredoxin oxidoreductases, beta subunit
[Energy production and conversion].
Length = 294
Score = 30.7 bits (70), Expect = 2.9
Identities = 16/65 (24%), Positives = 25/65 (38%), Gaps = 4/65 (6%)
Query: 651 FEEAKQFIRSGAFGSYDYNPLLDSLEGNTGYGRGDYFLVGYDFPSYLEAQDRVDQAYKDQ 710
EEAK + +G + Y Y P E G + Y YLE ++R K
Sbjct: 217 IEEAKLAVETGYWPLYRYEPGKAEEEKGKDIPIGIF----YPVEEYLEYEERFKHLTKSN 272
Query: 711 KKWLK 715
+ ++
Sbjct: 273 PELIQ 277
>gnl|CDD|226112 COG3584, COG3584, Uncharacterized protein conserved in bacteria
[Function unknown].
Length = 109
Score = 28.9 bits (65), Expect = 3.0
Identities = 14/36 (38%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Query: 535 VKLVNDVG-EVVNTDPEVNSYLKVVFVPNYNVSVAE 569
+ L + G +V+ DP V V+VP Y V+VAE
Sbjct: 41 IDLRRNPGYKVIAVDPSVIPLGSRVYVPGYGVAVAE 76
>gnl|CDD|173922 cd02171, G3P_Cytidylyltransferase, glycerol-3-phosphate
cytidylyltransferase. Glycerol-3-phosphate
cytidylyltransferase,(CDP-glycerol pyrophosphorylase).
Glycerol-3-phosphate cytidyltransferase acts in pathways
of teichoic acid biosynthesis. Teichoic acids are
substituted polymers, linked by phosphodiester bonds, of
glycerol, ribitol, etc. An example is poly(glycerol
phosphate), the major teichoic acid of the Bacillus
subtilis cell wall. Most, but not all, species encoding
proteins in this family are Gram-positive bacteria. A
closely related protein assigned a different function
experimentally is a human ethanolamine-phosphate
cytidylyltransferase.
Length = 129
Score = 29.0 bits (65), Expect = 4.2
Identities = 15/47 (31%), Positives = 21/47 (44%), Gaps = 3/47 (6%)
Query: 521 GGKAFATYTNAKRIVKLVNDVGEVVNTDPEVNSYLKVVFVPNYNVSV 567
G KA Y I++ + V V+ PE N K+ + YNV V
Sbjct: 45 GKKAVIPYEQRAEILESIRYVDLVI---PETNWEQKIEDIKKYNVDV 88
>gnl|CDD|215600 PLN03141, PLN03141, 3-epi-6-deoxocathasterone 23-monooxygenase;
Provisional.
Length = 452
Score = 30.1 bits (68), Expect = 4.7
Identities = 13/32 (40%), Positives = 18/32 (56%), Gaps = 4/32 (12%)
Query: 544 VVNTDPEVNSYL----KVVFVPNYNVSVAELL 571
+V+TD EVN + FVP Y S+ EL+
Sbjct: 58 IVSTDAEVNKVVLQSDGNAFVPAYPKSLTELM 89
>gnl|CDD|218748 pfam05787, DUF839, Bacterial protein of unknown function (DUF839).
This family consists of several bacterial proteins of
unknown function that contain a predicted beta-propeller
repeats.
Length = 515
Score = 30.2 bits (68), Expect = 4.9
Identities = 31/158 (19%), Positives = 52/158 (32%), Gaps = 30/158 (18%)
Query: 515 PRTIMIGGKAFATYTNAKRIVKLV-------NDVGEVVNTDPEVNSYLKV-----VFVPN 562
P T GG+ + TN + K+ N G++V DP + +F+
Sbjct: 350 PVTGFGGGEVYFVLTNNGKRSKIDSANPRAKNGYGQIVRYDPATRDHTATKFTWDLFLVA 409
Query: 563 YNVSVAELLIPGSELSQHISTAGMEASGTSNMKFSLNGCLIIGTLDGANVEIRQEIGEEN 622
+ + A++ G ++AG + N+ F G L I T DG
Sbjct: 410 GDPTDAKVFSAG-------TSAGNDFESPDNITFDPAGRLWICT-DGNGS---------- 451
Query: 623 FFLFGAVAEQVPKLRKEREDGLFKPDPRFEEAKQFIRS 660
R + +G+ P E K F+
Sbjct: 452 TLGVTPEGNVYNLARNDGNNGMLTEGPIRGEVKLFLTG 489
>gnl|CDD|190562 pfam03201, HMD, H2-forming N5,N10-methylene-tetrahydromethanopterin
dehydrogenase.
Length = 98
Score = 28.1 bits (63), Expect = 5.0
Identities = 12/36 (33%), Positives = 19/36 (52%)
Query: 583 TAGMEASGTSNMKFSLNGCLIIGTLDGANVEIRQEI 618
+ ME SG M+ +L+ ++G+ D N QEI
Sbjct: 52 ASLMETSGIDGMEEALDPEALLGSADSMNFGELQEI 87
>gnl|CDD|99959 cd01635, Glycosyltransferase_GTB_type, Glycosyltransferases
catalyze the transfer of sugar moieties from activated
donor molecules to specific acceptor molecules, forming
glycosidic bonds. The acceptor molecule can be a lipid,
a protein, a heterocyclic compound, or another
carbohydrate residue. The structures of the formed
glycoconjugates are extremely diverse, reflecting a wide
range of biological functions. The members of this
family share a common GTB topology, one of the two
protein topologies observed for
nucleotide-sugar-dependent glycosyltransferases. GTB
proteins have distinct N- and C- terminal domains each
containing a typical Rossmann fold. The two domains have
high structural homology despite minimal sequence
homology. The large cleft that separates the two domains
includes the catalytic center and permits a high degree
of flexibility.
Length = 229
Score = 29.1 bits (65), Expect = 7.4
Identities = 26/149 (17%), Positives = 43/149 (28%), Gaps = 28/149 (18%)
Query: 478 QVKRIHEYKRQLLNILGAIYRYKKLKEMSPQERKKTTPRTIMIGGKAFATYTNAKRIVKL 537
V R+ K + I + LKE R I G + L
Sbjct: 109 FVGRLAPEK----GLDDLIEAFALLKE-----RGPDLKLVIAGDGPEREYLEELLAALLL 159
Query: 538 VNDVGEVVNTDPEVNSYLKVVFVPNYNVSVAELLIPGSELSQHISTAGMEASGTSNMKFS 597
++ V + DPE + LL+ +++ + + E G ++
Sbjct: 160 LDRVIFLGGLDPE---------------ELLALLLAAADVF--VLPSLREGFGLVVLEAM 202
Query: 598 LNGCLIIGTLDGANVEIRQEIGEENFFLF 626
G +I T G EI L
Sbjct: 203 ACGLPVIATDVGGPPEI--VEDGLTGLLV 229
>gnl|CDD|235501 PRK05559, PRK05559, DNA topoisomerase IV subunit B; Reviewed.
Length = 631
Score = 29.3 bits (67), Expect = 8.4
Identities = 11/25 (44%), Positives = 15/25 (60%), Gaps = 2/25 (8%)
Query: 496 IYRYKKLKEMSPQERKKTT--PRTI 518
I R+K L EM+P + +TT P T
Sbjct: 565 IQRFKGLGEMNPDQLWETTMDPETR 589
>gnl|CDD|214659 smart00433, TOP2c, TopoisomeraseII. Eukaryotic DNA topoisomerase
II, GyrB, ParE.
Length = 594
Score = 29.1 bits (66), Expect = 9.8
Identities = 14/44 (31%), Positives = 20/44 (45%), Gaps = 7/44 (15%)
Query: 484 EYKRQLLNILG-----AIYRYKKLKEMSPQERKKTT--PRTIMI 520
EY++ L G I RYK L EM+ + +TT P +
Sbjct: 516 EYEKWLEKTEGNKSKYEIQRYKGLGEMNADQLWETTMDPERRTL 559
>gnl|CDD|237720 PRK14463, PRK14463, ribosomal RNA large subunit methyltransferase
N; Provisional.
Length = 349
Score = 29.0 bits (65), Expect = 10.0
Identities = 15/40 (37%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
Query: 510 RKKTTPRTIMIGGKAFATYTNAKRIVKLVNDVGEVVNTDP 549
R+K T +MI G + +AKR+V+L++D+ VN P
Sbjct: 248 RRKITIEYVMIRG-LNDSLEDAKRLVRLLSDIPSKVNLIP 286
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.318 0.135 0.404
Gapped
Lambda K H
0.267 0.0803 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 38,884,558
Number of extensions: 3859115
Number of successful extensions: 3337
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3280
Number of HSP's successfully gapped: 33
Length of query: 749
Length of database: 10,937,602
Length adjustment: 104
Effective length of query: 645
Effective length of database: 6,324,786
Effective search space: 4079486970
Effective search space used: 4079486970
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 63 (27.9 bits)