RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 004485
(749 letters)
>2gj4_A Glycogen phosphorylase, muscle form; transferase; HET: PLR 2TH;
1.60A {Oryctolagus cuniculus} SCOP: c.87.1.4 PDB:
2gm9_A* 1abb_A* 3nc4_A* 3l79_A* 2pyd_A* 2pyi_A* 3l7a_A*
3l7b_A* 3l7c_A* 3l7d_A* 2qnb_A* 1c8l_A* 1axr_A* 1gpy_A*
1e1y_A* 1lwo_A* 1pyg_A* 1uzu_A* 1lwn_A* 1xkx_A* ...
Length = 824
Score = 1243 bits (3220), Expect = 0.0
Identities = 362/758 (47%), Positives = 489/758 (64%), Gaps = 24/758 (3%)
Query: 1 MEFLQGRTLTNAIGSLDIQNAYADALNNLGHVLEEIAEQEKDAALGNGGLGRLASCFLDS 60
+EF GRTL N + +L ++NA +A LG +EE+ E E+DA LGNGGLGRLA+CFLDS
Sbjct: 76 LEFYMGRTLQNTMVNLALENACDEATYQLGLDMEELEEIEEDAGLGNGGLGRLAACFLDS 135
Query: 61 MATLNLPAWGYGLRYRYGLFKQKITKQGQEEVAEDWLEKFSPWEVVRHDVVFPVRFFGSV 120
MATL L A+GYG+RY +G+F QKI Q E A+DWL +PWE R + PV F+G V
Sbjct: 136 MATLGLAAYGYGIRYEFGIFNQKICGGWQMEEADDWLRYGNPWEKARPEFTLPVHFYGRV 195
Query: 121 MVNPNGTRKWVGGEVVQAVAYDIPIPGYKTKNTISLRLWDAKASAEDFNLFQFNDGQYES 180
G + WV +VV A+ YD P+PGY+ ++RLW AKA DFNL FN G Y
Sbjct: 196 EHTSQGAK-WVDTQVVLAMPYDTPVPGYRNNVVNTMRLWSAKAP-NDFNLKDFNVGGYIQ 253
Query: 181 AAQLHSRAQQICAVLYPGDSTEEGKLLRLKQQFFLCSASLQDMILRFKERK------SGR 234
A + A+ I VLYP D+ EGK LRLKQ++F+ +A+LQD+I RFK K
Sbjct: 254 AVLDRNLAENISRVLYPNDNFFEGKELRLKQEYFVVAATLQDIIRRFKSSKFGCRDPVRT 313
Query: 235 QWSEFPSKVAVQLNDTHPTLAIPELMRLLMDEEGLGWDEAWDITTRTVAYTNHTVLPEAL 294
+ FP KVA+QLNDTHP+LAIPELMR+L+D E L WD+AW++T +T AYTNHTVLPEAL
Sbjct: 314 NFDAFPDKVAIQLNDTHPSLAIPELMRVLVDLERLDWDKAWEVTVKTCAYTNHTVLPEAL 373
Query: 295 EKWSQAVMWKLLPRHMEIIEEIDKRFIAMVRSTRSDLESKIPSMCILDNNPKKPVVRMAN 354
E+W ++ LLPRH++II EI++RF+ V + ++ M +++ K + MA+
Sbjct: 374 ERWPVHLLETLLPRHLQIIYEINQRFLNRVAAAFPGDVDRLRRMSLVEEGAVK-RINMAH 432
Query: 355 LCVVSAHTVNGVAQLHSDILKADLFADYVSLWPNKLQNKTNGITPRRWLRFCNPELSKII 414
LC+ +H VNGVA++HS+ILK +F D+ L P+K QNKTNGITPRRWL CNP L++II
Sbjct: 433 LCIAGSHAVNGVARIHSEILKKTIFKDFYELEPHKFQNKTNGITPRRWLVLCNPGLAEII 492
Query: 415 TKWLKTDQWVTNLDLLVGLRQFADNTELQAEWESAKMASKKHLADYIWRVTGVTIDPNSL 474
+ + + ++++LD L L + D+ + K +K A Y+ R V I+PNSL
Sbjct: 493 AERIGEE-YISDLDQLRKLLSYVDDEAFIRDVAKVKQENKLKFAAYLEREYKVHINPNSL 551
Query: 475 FDIQVKRIHEYKRQLLNILGAIYRYKKLKEMSPQERKKTTPRTIMIGGKAFATYTNAKRI 534
FD+QVKRIHEYKRQLLN L I Y ++K+ + K PRT+MIGGKA Y AK I
Sbjct: 552 FDVQVKRIHEYKRQLLNCLHVITLYNRIKK---EPNKFVVPRTVMIGGKAAPGYHMAKMI 608
Query: 535 VKLVNDVGEVVNTDPEVNSYLKVVFVPNYNVSVAELLIPGSELSQHISTAGMEASGTSNM 594
+KL+ +G+VVN DP V L+V+F+ NY VS+AE +IP ++LS+ ISTAG EASGT NM
Sbjct: 609 IKLITAIGDVVNHDPVVGDRLRVIFLENYRVSLAEKVIPAADLSEQISTAGTEASGTGNM 668
Query: 595 KFSLNGCLIIGTLDGANVEIRQEIGEENFFLFGAVAEQVPKLRKEREDG--LFKPDPRFE 652
KF LNG L IGT+DGANVE+ +E GEENFF+FG E V +L + + + P
Sbjct: 669 KFMLNGALTIGTMDGANVEMAEEAGEENFFIFGMRVEDVDRLDQRGYNAQEYYDRIPELR 728
Query: 653 EAKQFIRSGAFGSYD---YNPLLDSLEGNTGYGRGDYFLVGYDFPSYLEAQDRVDQAYKD 709
+ + + SG F + +++ L + D F V D+ Y++ Q+RV YK+
Sbjct: 729 QIIEQLSSGFFSPKQPDLFKDIVNMLMHH------DRFKVFADYEEYVKCQERVSALYKN 782
Query: 710 QKKWLKMSILSTAGSGKFSSDRTIAQYAKEIWNITECR 747
++W +M I + A SGKFSSDRTIAQYA+EIW + R
Sbjct: 783 PREWTRMVIRNIATSGKFSSDRTIAQYAREIWGVEPSR 820
>1l5w_A Maltodextrin phosphorylase; enzymatic catalysis, substrate complex,
trans; HET: GLC PLP; 1.80A {Escherichia coli} SCOP:
c.87.1.4 PDB: 1l5v_A* 1l6i_A* 2asv_A* 2av6_A* 2aw3_A*
2azd_A* 1qm5_A* 1e4o_A* 2ecp_A* 1ahp_A*
Length = 796
Score = 1229 bits (3182), Expect = 0.0
Identities = 330/748 (44%), Positives = 456/748 (60%), Gaps = 24/748 (3%)
Query: 1 MEFLQGRTLTNAIGSLDIQNAYADALNNLGHVLEEIAEQEKDAALGNGGLGRLASCFLDS 60
MEFL GR N + +L D+L L ++ E+E D ALGNGGLGRLA+CFLDS
Sbjct: 66 MEFLIGRLTGNNLLNLGWYQDVQDSLKAYDINLTDLLEEEIDPALGNGGLGRLAACFLDS 125
Query: 61 MATLNLPAWGYGLRYRYGLFKQKITKQGQEEVAEDWLEKFSPWEVVRHDVVFPVRFFGSV 120
MAT+ A GYGL Y+YGLF+Q Q E +DW PW + V G V
Sbjct: 126 MATVGQSATGYGLNYQYGLFRQSFVDGKQVEAPDDWHRSNYPWFRHNEALDVQVGIGGKV 185
Query: 121 MVNPNGTRKWVGGEVVQAVAYDIPIPGYKTKNTISLRLWDAKASAEDFNLFQFNDGQYES 180
+ +W + A+D+P+ GY+ LRLW A + F+L +FNDG +
Sbjct: 186 TKD----GRWEPEFTITGQAWDLPVVGYRNGVAQPLRLWQATHA-HPFDLTKFNDGDFLR 240
Query: 181 AAQLHSRAQQICAVLYPGDSTEEGKLLRLKQQFFLCSASLQDMILRFKERKSGRQWSEFP 240
A Q A+++ VLYP D+ EGK LRL QQ+F C+ S+ D++ R +GR+ E
Sbjct: 241 AEQQGINAEKLTKVLYPNDNAFEGKKLRLMQQYFQCACSVADILRRHH--LAGRKLHELA 298
Query: 241 SKVAVQLNDTHPTLAIPELMRLLMDEEGLGWDEAWDITTRTVAYTNHTVLPEALEKWSQA 300
+QLNDTHPT+AIPEL+R+L+DE + WD+AW IT++T AYTNHT++PEALE+W
Sbjct: 299 DYEVIQLNDTHPTIAIPELLRVLIDEHQMSWDDAWAITSKTFAYTNHTLMPEALERWDVK 358
Query: 301 VMWKLLPRHMEIIEEIDKRFIAMVRSTRSDLESKIPSMCILDNNPKKPVVRMANLCVVSA 360
++ LLPRHM+II EI+ RF +V T E + ++ + V MANLCVV
Sbjct: 359 LVKGLLPRHMQIINEINTRFKTLVEKTWPGDEKVWAKLAVVHDK----QVHMANLCVVGG 414
Query: 361 HTVNGVAQLHSDILKADLFADYVSLWPNKLQNKTNGITPRRWLRFCNPELSKIITKWLKT 420
VNGVA LHSD++ DLF +Y LWPNK N TNGITPRRW++ CNP L+ ++ K L+
Sbjct: 415 FAVNGVAALHSDLVVKDLFPEYHQLWPNKFHNVTNGITPRRWIKQCNPALAALLDKSLQK 474
Query: 421 DQWVTNLDLLVGLRQFADNTELQAEWESAKMASKKHLADYIWRVTGVTIDPNSLFDIQVK 480
+ W +LD L+ L +FAD+ + + ++ K A+K LA+++ TG+ I+P ++FDIQ+K
Sbjct: 475 E-WANDLDQLINLEKFADDAKFRQQYREIKQANKVRLAEFVKVRTGIEINPQAIFDIQIK 533
Query: 481 RIHEYKRQLLNILGAIYRYKKLKEMSPQERKKTTPRTIMIGGKAFATYTNAKRIVKLVND 540
R+HEYKRQ LN+L + YK+++E +R PR + G KA Y AK I+ +N
Sbjct: 534 RLHEYKRQHLNLLHILALYKEIRENPQADR---VPRVFLFGAKAAPGYYLAKNIIFAINK 590
Query: 541 VGEVVNTDPEVNSYLKVVFVPNYNVSVAELLIPGSELSQHISTAGMEASGTSNMKFSLNG 600
V +V+N DP V LKVVF+P+Y VS AE LIP +++S+ ISTAG EASGT NMK +LNG
Sbjct: 591 VADVINNDPLVGDKLKVVFLPDYCVSAAEKLIPAADISEQISTAGKEASGTGNMKLALNG 650
Query: 601 CLIIGTLDGANVEIRQEIGEENFFLFGAVAEQVPKLRKERED--GLFKPDPRFEEAKQFI 658
L +GTLDGANVEI +++GEEN F+FG EQV + + D K D + + +
Sbjct: 651 ALTVGTLDGANVEIAEKVGEENIFIFGHTVEQVKAILAKGYDPVKWRKKDKVLDAVLKEL 710
Query: 659 RSGAFGSYD---YNPLLDSLEGNTGYGRGDYFLVGYDFPSYLEAQDRVDQAYKDQKKWLK 715
SG + D ++ +L S+ G GD +LV DF +Y+EAQ +VD Y+DQ+ W +
Sbjct: 711 ESGKYSDGDKHAFDQMLHSI----GKQGGDPYLVMADFAAYVEAQKQVDVLYRDQEAWTR 766
Query: 716 MSILSTAGSGKFSSDRTIAQYAKEIWNI 743
+IL+TA G FSSDR+I Y IW
Sbjct: 767 AAILNTARCGMFSSDRSIRDYQARIWQA 794
>2c4m_A Glycogen phosphorylase; allosteric control, phosphate dependence,
starch degrading, transferase, glycosyltransferase; HET:
PLP; 1.9A {Corynebacterium callunae}
Length = 796
Score = 1221 bits (3163), Expect = 0.0
Identities = 335/751 (44%), Positives = 450/751 (59%), Gaps = 31/751 (4%)
Query: 1 MEFLQGRTLTNAIGSLDIQNAYADALNNLGHVLEEIAEQEKDAALGNGGLGRLASCFLDS 60
EFL GR L N + +L + + A A LGH L +I E E DAALGNGGLGRLA+CFLDS
Sbjct: 67 AEFLMGRALLNNLTNLGLVDEAAAATRELGHELTDILEIENDAALGNGGLGRLAACFLDS 126
Query: 61 MATLNLPAWGYGLRYRYGLFKQKITKQGQEEVAEDWLEKFSPWEVVRHDVVFPVRFFGSV 120
T + P GYGL YR+GLF+Q + Q E + W E+ P+ + R V F
Sbjct: 127 AVTQDYPVTGYGLLYRFGLFRQSFNEGFQVEKPDPWREEEYPFTIRRASDQLVVCF---- 182
Query: 121 MVNPNGTRKWVGGEVVQAVAYDIPIPGYKTKNTISLRLWDAKASAEDFNLFQFNDGQYES 180
+A+ YD+PI GY T N +LRLW A+ E+F+ FN ++
Sbjct: 183 -----------DDMKTRAIPYDMPITGYGTHNVGTLRLWKAEPW-EEFDYDAFNAQRFTD 230
Query: 181 AAQLHSRAQQICAVLYPGDSTEEGKLLRLKQQFFLCSASLQDMILRFKERKSGRQWSEFP 240
A R IC VLYP D+T EGK LR++QQ+F SASLQ MI + S F
Sbjct: 231 AIIERERVSDICRVLYPNDTTYEGKKLRVRQQYFFTSASLQAMIQDHL--AHHKDLSNFA 288
Query: 241 SKVAVQLNDTHPTLAIPELMRLLMDEEGLGWDEAWDITTRTVAYTNHTVLPEALEKWSQA 300
+VQLNDTHP LAIPELMRLLMDE +GW+E+W I ++T AYTNHTVL EALE+W +
Sbjct: 289 EFHSVQLNDTHPVLAIPELMRLLMDEHDMGWEESWAIVSKTFAYTNHTVLTEALEQWDEQ 348
Query: 301 VMWKLLPRHMEIIEEIDKRFIAMVRSTRSDLESKIPSMCILDNNPKKPVVRMANLCVVSA 360
+ +L R EII EID+RF + D E I M + + V MA + +A
Sbjct: 349 IFQQLFWRVWEIIAEIDRRFRLERAADGLD-EETINRMAPIQHG----TVHMAWIACYAA 403
Query: 361 HTVNGVAQLHSDILKADLFADYVSLWPNKLQNKTNGITPRRWLRFCNPELSKIITKWLKT 420
+++NGVA LH++I+KA+ AD+ +LWP K NKTNG+TPRRWLR NP LS ++T+ +
Sbjct: 404 YSINGVAALHTEIIKAETLADWYALWPEKFNNKTNGVTPRRWLRMINPGLSDLLTRLSGS 463
Query: 421 DQWVTNLDLLVGLRQFADNTELQAEWESAKMASKKHLADYIWRVTGVTIDPNSLFDIQVK 480
D WVT+LD L LR +AD+ + E + K A+K+ A++I G+ IDP S+FD+Q+K
Sbjct: 464 DDWVTDLDELKKLRSYADDKSVLEELRAIKAANKQDFAEWILERQGIEIDPESIFDVQIK 523
Query: 481 RIHEYKRQLLNILGAIYRYKKLKEMSPQERKKTTPRTIMIGGKAFATYTNAKRIVKLVND 540
R+HEYKRQL+N L + Y ++KE RT++ G KA Y AK I+KL+N
Sbjct: 524 RLHEYKRQLMNALYVLDLYFRIKED---GLTDIPARTVIFGAKAAPGYVRAKAIIKLINS 580
Query: 541 VGEVVNTDPEVNSYLKVVFVPNYNVSVAELLIPGSELSQHISTAGMEASGTSNMKFSLNG 600
+ ++VN DPEV+ LKVVFV NYNVS AE ++P S++S+ ISTAG EASGTSNMKF +NG
Sbjct: 581 IADLVNNDPEVSPLLKVVFVENYNVSPAEHILPASDVSEQISTAGKEASGTSNMKFMMNG 640
Query: 601 CLIIGTLDGANVEIRQEIGEENFFLFGAVAEQVPKLRKE-REDGLFKPDPRFEEAKQFIR 659
L +GT+DGANVEI +GEEN ++FGA E++P LR+ + L++ P + A +
Sbjct: 641 ALTLGTMDGANVEIVDSVGEENAYIFGARVEELPALRESYKPYELYETVPGLKRALDALD 700
Query: 660 SGAFGSYD---YNPLLDSLEGNTGYGRGDYFLVGYDFPSYLEAQDRVDQAY-KDQKKWLK 715
+G + + L SL G D + V DF Y E +DR+ Y D W +
Sbjct: 701 NGTLNDNNSGLFYDLKHSLIHGYGKDASDTYYVLGDFADYRETRDRMAADYASDPLGWAR 760
Query: 716 MSILSTAGSGKFSSDRTIAQYAKEIWNITEC 746
M+ ++ SG+FSSDRTI YA EIW +
Sbjct: 761 MAWINICESGRFSSDRTIRDYATEIWKLEPT 791
>1ygp_A Yeast glycogen phosphorylase; phosphorylated form,
glycosyltransferase; HET: PLP; 2.80A {Saccharomyces
cerevisiae} SCOP: c.87.1.4
Length = 879
Score = 1218 bits (3153), Expect = 0.0
Identities = 363/781 (46%), Positives = 499/781 (63%), Gaps = 45/781 (5%)
Query: 1 MEFLQGRTLTNAIGSLDIQNA-------------YADALNNLGHVLEEIAEQEKDAALGN 47
+EFL GR L NA+ ++ I++ AL+ LG LE++ +QE DA LGN
Sbjct: 104 LEFLMGRALDNALINMKIEDPEDPAASKGKPREMIKGALDELGFKLEDVLDQEPDAGLGN 163
Query: 48 GGLGRLASCFLDSMATLNLPAWGYGLRYRYGLFKQKITKQGQEEVAEDWLEKFSPWEVVR 107
GGLGRLA+CF+DSMAT +PAWGYGLRY YG+F QKI Q E + WL +PWE+ R
Sbjct: 164 GGLGRLAACFVDSMATEGIPAWGYGLRYEYGIFAQKIIDGYQVETPDYWLNSGNPWEIER 223
Query: 108 HDVVFPVRFFGSVMVNPNG-----TRKWVGGEVVQAVAYDIPIPGYKTKNTISLRLWDAK 162
++V PV F+G V G +W+GGE V AVAYD P+PG+KT N +LRLW A+
Sbjct: 224 NEVQIPVTFYGYVDRPEGGKTTLSASQWIGGERVLAVAYDFPVPGFKTSNVNNLRLWQAR 283
Query: 163 ASAEDFNLFQFNDGQYESAAQLHSRAQQICAVLYPGDSTEEGKLLRLKQQFFLCSASLQD 222
+ +F+L +FN+G Y+++ RA+ I AVLYP D+ +GK LRLKQQ+F C+ASL D
Sbjct: 284 PT-TEFDLNKFNNGDYKNSVAQQQRAESITAVLYPNDNFAQGKELRLKQQYFWCAASLHD 342
Query: 223 MILRFKERKSGRQWSEFPSKVAVQLNDTHPTLAIPELMRLLMDEEGLGWDEAWDITTRTV 282
++ RFK KS R W+EFP +VA+QLNDTHPTLAI EL R+L+D E L W EAWDI T+T
Sbjct: 343 ILRRFK--KSKRPWTEFPDQVAIQLNDTHPTLAIVELQRVLVDLEKLDWHEAWDIVTKTF 400
Query: 283 AYTNHTVLPEALEKWSQAVMWKLLPRHMEIIEEIDKRFIAMVRSTRSDLESKIPSMCILD 342
AYTNHTV+ EALEKW + + LLPRH+EII +I+ F+ V + + I++
Sbjct: 401 AYTNHTVMQEALEKWPRRLFGHLLPRHLEIIYDINWFFLEDVAKKFPKDVDLLSRISIIE 460
Query: 343 NNPKKPVVRMANLCVVSAHTVNGVAQLHSDILKADLFADYVSLW-PNKLQNKTNGITPRR 401
N + +RMA L +V +H VNGV +LHS+++K +F D++ + P+K N TNGITPRR
Sbjct: 461 ENSPERQIRMAFLAIVGSHKVNGVVELHSELIKTTIFKDFIKFYGPSKFVNVTNGITPRR 520
Query: 402 WLRFCNPELSKIITKWL--KTDQWVTNLDLLVGLRQFADNTELQAEWESAKMASKKHLAD 459
WL+ NP L+K+I++ L T++++ ++ L L ++ ++ E +W K+ +K L D
Sbjct: 521 WLKQANPSLAKLISETLNDPTEEYLLDMAKLTQLEKYVEDKEFLKKWNQVKLNNKIRLVD 580
Query: 460 YIWR------VTGVTIDPNSLFDIQVKRIHEYKRQLLNILGAIYRYKKLKEMSPQER--- 510
I + + ++LFD+QVKRIHEYKRQ LN+ G IYRY +K M
Sbjct: 581 LIKKENDGVDIINREYLDDTLFDMQVKRIHEYKRQQLNVFGIIYRYLAMKNMLKNGASIE 640
Query: 511 ---KKTTPRTIMIGGKAFATYTNAKRIVKLVNDVGEVVNTDPEVNSYLKVVFVPNYNVSV 567
+K + + GGK+ Y AK I+KL+N V ++VN D + LKVVFV +YNVS
Sbjct: 641 EVARKYPRKVSIFGGKSAPGYYMAKLIIKLINCVADIVNNDESIEHLLKVVFVADYNVSK 700
Query: 568 AELLIPGSELSQHISTAGMEASGTSNMKFSLNGCLIIGTLDGANVEIRQEIGEENFFLFG 627
AE++IP S+LS+HISTAG EASGTSNMKF +NG LIIGT+DGANVEI +EIGE+N FLFG
Sbjct: 701 AEIIIPASDLSEHISTAGTEASGTSNMKFVMNGGLIIGTVDGANVEITREIGEDNVFLFG 760
Query: 628 AVAEQVPKLRKEREDGLFKPDPRFEEAKQFIRSGAFGSYD---YNPLLDSLEGNTGYGRG 684
++E V +LR + + +I SG F + + PL+DS++ + G
Sbjct: 761 NLSENVEELRYNHQYHPQDLPSSLDSVLSYIESGQFSPENPNEFKPLVDSIKYH-----G 815
Query: 685 DYFLVGYDFPSYLEAQDRVDQAYKDQK-KWLKMSILSTAGSGKFSSDRTIAQYAKEIWNI 743
DY+LV DF SYL + VDQ + +Q+ +WLK S+LS A G FSSDR I +Y+ IWN+
Sbjct: 816 DYYLVSDDFESYLATHELVDQEFHNQRSEWLKKSVLSLANVGFFSSDRCIEEYSDTIWNV 875
Query: 744 T 744
Sbjct: 876 E 876
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 62.8 bits (152), Expect = 3e-10
Identities = 86/560 (15%), Positives = 158/560 (28%), Gaps = 190/560 (33%)
Query: 2 EFLQGRTLTNAIGSLDIQN------------AYADALNNLGHVLEEIAEQEKDAAL---G 46
+L+G + L +N Y A ++ + +AL
Sbjct: 94 CYLEGNDIHALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSN----SALFRAV 149
Query: 47 NGGLGRLASCFLDSMATLNLPAWGYGLRYRYGLFK--QKITKQGQEEVAEDWLEKFSP-- 102
G +L + F G G Y F+ + + + V D ++ +
Sbjct: 150 GEGNAQLVAIF-----------GGQGNTDDY--FEELRDLYQTYHVLV-GDLIKFSAETL 195
Query: 103 WEVVRHDVVFPVRFFGSVMVNPNG--TRKWVGGEVVQAVAYDIPIPGYKTKNTISLRLWD 160
E++R + F G +W+ + P Y IS L
Sbjct: 196 SELIRTTLDAEKVF-------TQGLNILEWLENPS------NTPDKDYLLSIPISCPL-- 240
Query: 161 AKASAEDFNLFQFNDGQYESAAQLHSRAQQICAVLYPGDSTEEGKLLRLKQQFFLCSASL 220
+ Q Y A+L PG+ L+ +
Sbjct: 241 -------IGVIQL--AHYVVTAKLLG--------FTPGE---------LRSYLKGATGHS 274
Query: 221 QDMI--LRFKERKSGRQWSEF--PSKVAVQL--------NDTHPTLAIPELMRLLMDEEG 268
Q ++ + E S W F + A+ + + +P ++P + E
Sbjct: 275 QGLVTAVAIAETDS---WESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENN 331
Query: 269 LGW--------DEAWDITTRTVAYTNHTVLPEALEKWSQAVMWKLL--PRHMEII----E 314
G + + V TN LP + V L+ +++ ++ +
Sbjct: 332 EGVPSPMLSISNLTQEQVQDYVNKTNSH-LPA-----GKQVEISLVNGAKNL-VVSGPPQ 384
Query: 315 EIDKRFIAMVRSTR--SDLE-SKIPSMCILDNNPKKPVVRMANLCVVSAHTVNGVAQLHS 371
+ +R + S L+ S+IP + +K L V++ HS
Sbjct: 385 SL-YGLNLTLRKAKAPSGLDQSRIPF------SERKLKFSNRFL-PVASP-------FHS 429
Query: 372 DILK-------ADLFADYVSLWPNKLQ----NKTNGITPRRWLRFCNPELSKIITKWLKT 420
+L DL + VS +Q + +G LR + +S+ I +
Sbjct: 430 HLLVPASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSD----LRVLSGSISERIVDCI-- 483
Query: 421 DQWVTNLDLLVGLRQFADNTELQAEWESAKMASKKHLADY--------------IWRVTG 466
L +WE+ H+ D+ TG
Sbjct: 484 -------------------IRLPVKWETTTQFKATHILDFGPGGASGLGVLTHRNKDGTG 524
Query: 467 V------TIDPNSLFDIQVK 480
V T+D N D K
Sbjct: 525 VRVIVAGTLDINPDDDYGFK 544
Score = 35.0 bits (80), Expect = 0.11
Identities = 27/149 (18%), Positives = 45/149 (30%), Gaps = 68/149 (45%)
Query: 14 GSLDIQNAYADALNNLGHVLEEIAEQEKDAALGNGGLGRLASCFLDSM---ATLNLPAWG 70
G + +A GH L E A AL + D M + + +
Sbjct: 1751 GLIPADATFA------GHSLGEYA------AL---------ASLADVMSIESLVEV---- 1785
Query: 71 YGLRYRYGLFKQKITKQGQEEVAEDWLEKFSPWEVVRHDVVFPVRFFGSVMVNPN----- 125
+ YR G+ Q V D E+ R + +G + +NP
Sbjct: 1786 --VFYR-GMTMQ-------VAVPRD--------ELGRSN-------YGMIAINPGRVAAS 1820
Query: 126 ----GTRKWV------GGEVVQAVAYDIP 144
+ V G +V+ V Y++
Sbjct: 1821 FSQEALQYVVERVGKRTGWLVEIVNYNVE 1849
Score = 33.9 bits (77), Expect = 0.25
Identities = 49/321 (15%), Positives = 90/321 (28%), Gaps = 115/321 (35%)
Query: 298 SQAV-MWKLL----PRHMEIIEEIDKRFIAMVRSTRSDLESKIPSMCILDNNPKKPVVRM 352
SQ M L ++ D F + I I+ NNP +
Sbjct: 1626 SQEQGMGMDLYKTSKAAQDVWNRADNHF-------KDTYGFSILD--IVINNPVNLTI-- 1674
Query: 353 ANLCVVSAHTVNGVAQLHSDILKADLFADYVSLWPNKLQNKTNG-ITPRRWLRFCNPELS 411
H G + + +Y ++ + +G + + + N +
Sbjct: 1675 --------H--FGGEKGKR------IRENYSAM---IFETIVDGKLKTEKIFKEINEHST 1715
Query: 412 KIITKWLKTDQWVTNLDLLVGLRQFADNTELQ--------AEWESAKMASKKHLADYIWR 463
+ + LL QF Q A +E +
Sbjct: 1716 SYT--------FRSEKGLL-SATQFT-----QPALTLMEKAAFE-------------DLK 1748
Query: 464 VTGVTIDPNSLF--DIQVKRIH---EY-----KRQLLNILGAI----YRYKKLKEMSPQ- 508
G+ I ++ F H EY +++I + YR ++ P+
Sbjct: 1749 SKGL-IPADATFAG-------HSLGEYAALASLADVMSIESLVEVVFYRGMTMQVAVPRD 1800
Query: 509 ERKKTTPRTIMIGGKAFATYTNAKRIVKLVNDVGEVVNTDPEVNSYLKVVFVPNYNVSVA 568
E ++ I I A + + + +V VG+ +++V NYNV
Sbjct: 1801 ELGRSNYGMIAINPGRVAASFSQEALQYVVERVGK------RTGWLVEIV---NYNV--- 1848
Query: 569 ELLIPGSELSQHISTAG-MEA 588
Q AG + A
Sbjct: 1849 ----EN---QQ-YVAAGDLRA 1861
Score = 28.9 bits (64), Expect = 9.5
Identities = 21/125 (16%), Positives = 43/125 (34%), Gaps = 31/125 (24%)
Query: 563 YNVSVAELLIPGSELSQHISTAGMEASGTSNMKFSLNGCLIIGTLDGANVEIRQEIGEEN 622
Y+V V +L+ +E + ++A K G I+ L+ + +++
Sbjct: 180 YHVLVGDLIKFSAETLSELIRTTLDAE-----KVFTQGLNILEWLENPS-----NTPDKD 229
Query: 623 FFLFGAVAEQVPKLRKEREDGLFKPDPRFEEAKQFIRSGAFG-SYDYNP--LLDSLEGNT 679
+ L ++ P + G+ Q + P L L+G T
Sbjct: 230 YLLSIPIS--CPLI------GVI----------QLAHYVVTAKLLGFTPGELRSYLKGAT 271
Query: 680 GYGRG 684
G+ +G
Sbjct: 272 GHSQG 276
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 61.4 bits (148), Expect = 8e-10
Identities = 84/618 (13%), Positives = 154/618 (24%), Gaps = 214/618 (34%)
Query: 13 IGSLDIQNAYADALNNLGHVL--EEIAE--QEKDAALGNGGLGRLASCFLDSMATLNLPA 68
+ + D + D + +L EEI KDA G RL L +
Sbjct: 30 VDNFDCK----DVQDMPKSILSKEEIDHIIMSKDAVSG---TLRLFWTLLSKQEEMVQKF 82
Query: 69 WGYGLRYRYGLFKQKITKQ-----GQEEVAEDWLEK-------FSPWEVVRHDVVFPVR- 115
LR Y I + + + ++ F+ + V R +R
Sbjct: 83 VEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQ 142
Query: 116 ------------FFGSVMVNPNGTRKWVGGEVVQAVAYDIPIPGYKTKNTISLRLWDAKA 163
G ++ G+ K V V + + K
Sbjct: 143 ALLELRPAKNVLIDG--VL---GSGKTW---VALDVCLSYKV---QCKM----------- 180
Query: 164 SAEDFNLFQFNDGQYESAAQLHSRAQQICAVLYPGDSTEEGKLLRLKQQFFLCSASLQDM 223
DF +F N S + Q++ + P ++ +K + S+Q
Sbjct: 181 ---DFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRI----HSIQAE 233
Query: 224 ILRFKERKSGRQ--------WS-------EFPSKVAVQLNDTHPTLAIPELMR----LLM 264
+ R + K + K+ + T + L
Sbjct: 234 LRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDH 293
Query: 265 DEEGLGWDEAWDITTRTVAYTNHTV--LPEALEKWSQAVMWKLLPRHMEIIEEIDKRFIA 322
L DE + + Y + LP + + PR + II E + +A
Sbjct: 294 HSMTLTPDEVKSLLLK---YLDCRPQDLPR------EVL--TTNPRRLSIIAESIRDGLA 342
Query: 323 ---------------MVRSTRSDLES-----------------KIPS--MCILDNNPKKP 348
++ S+ + LE IP+ + ++ + K
Sbjct: 343 TWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKS 402
Query: 349 VVR-MANLCV-------------VSAH--------TVNGVAQLHSDILKADLFADYVSLW 386
V + N +S + LH I+
Sbjct: 403 DVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSD 462
Query: 387 ---PNKLQN----------KTNGITPR-----------RWLRFCNPELSKIITKWLKTDQ 422
P L K R R+L KI +
Sbjct: 463 DLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLE------QKIRHDSTAWNA 516
Query: 423 WVTNLDLLVGLRQFADNTELQAEWESAKMASKKHLADYIWRVTGVTIDPNSLFDIQVKRI 482
+ L+ L L+ + K ++ D DP ++ + +
Sbjct: 517 SGSILNTLQQLKFY-----------------KPYICD---------NDP--KYE---RLV 545
Query: 483 HEYKRQLLNILGAIYRYK 500
+ L I + K
Sbjct: 546 NAILDFLPKIEENLICSK 563
Score = 44.8 bits (105), Expect = 9e-05
Identities = 49/275 (17%), Positives = 85/275 (30%), Gaps = 70/275 (25%)
Query: 425 TNLDLL-VGLRQFADNTELQAEWESAKMASKKHLADYIWRVTGVTIDPNSLFDI-QVKRI 482
D+L V F DN + + + K K D+I LF K+
Sbjct: 17 QYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQE 76
Query: 483 HEYKRQLLNILGAIYRYKKLKEMSPQERKKTTPRTIMIGGKAFATYTNAKRIVKLVNDVG 542
++ + +L Y++ L E+++ + T M + + +L ND
Sbjct: 77 EMVQKFVEEVLRINYKF--LMSPIKTEQRQPSMMTRM-----YIEQRD-----RLYNDN- 123
Query: 543 EVVNTDPEVNSYLKVVFVPNYNVS----VAEL------LIPGSELSQHISTAGMEASGTS 592
VF YNVS +L L P + G+ SG +
Sbjct: 124 --------------QVFAK-YNVSRLQPYLKLRQALLELRPAKNVLID----GVLGSGKT 164
Query: 593 NMKFSLNGCLIIGTLDGANVEIRQEIGEENFFL-FG------AVAEQVPKLR-------K 638
+ + + +++ ++ + F+L V E + KL
Sbjct: 165 --------WVALDVC--LSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWT 214
Query: 639 EREDGLFKPDPRFEEAKQFIRSGAFGSYDY-NPLL 672
R D R + +R S Y N LL
Sbjct: 215 SRSDHSSNIKLRIHSIQAELRR-LLKSKPYENCLL 248
>3b0z_B Flagellar biosynthetic protein FLHB; type III secretion system,
protein transport, MEMB protein; 2.45A {Salmonella
enterica subsp}
Length = 114
Score = 32.6 bits (75), Expect = 0.11
Identities = 14/43 (32%), Positives = 22/43 (51%), Gaps = 6/43 (13%)
Query: 610 ANVEIRQEIGEENFFLFGAVAE---QVPKLRKEREDGLFKPDP 649
+ EI Q+I + L+ AVAE V +L++ R G +P
Sbjct: 55 RHAEIGQQIPGQ---LYAAVAEVLAWVWQLKRWRLAGGQRPPQ 94
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A
{Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Length = 91
Score = 28.5 bits (65), Expect = 1.8
Identities = 8/28 (28%), Positives = 16/28 (57%), Gaps = 1/28 (3%)
Query: 14 GSLDIQNAYADALNNLGHVLEEIAEQEK 41
G++D N A+A NLG+ + + ++
Sbjct: 1 GAMDPGN-SAEAWYNLGNAYYKQGDYDE 27
Score = 28.1 bits (64), Expect = 2.9
Identities = 10/41 (24%), Positives = 18/41 (43%), Gaps = 5/41 (12%)
Query: 5 QGRTLTNAIGS----LDIQNAYADALNNLGHVLEEIAEQEK 41
QG AI L++ A+A NLG+ + + ++
Sbjct: 22 QGD-YDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDE 61
Score = 27.7 bits (63), Expect = 3.5
Identities = 10/35 (28%), Positives = 16/35 (45%), Gaps = 5/35 (14%)
Query: 5 QGRTLTNAIGS----LDIQNAYADALNNLGHVLEE 35
QG AI L++ A+A NLG+ ++
Sbjct: 56 QGD-YDEAIEYYQKALELDPNNAEAKQNLGNAKQK 89
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility
protein; secretin, TPR repeat, type IV pilus, bacterail
virulence; 1.54A {Neisseria meningitidis}
Length = 225
Score = 29.9 bits (68), Expect = 2.3
Identities = 4/41 (9%), Positives = 10/41 (24%), Gaps = 5/41 (12%)
Query: 5 QGRTLTNAIGSLD----IQNAYADALNNLGHVLEEIAEQEK 41
A S++ A + + + +K
Sbjct: 21 GQD-YRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDK 60
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A
{Thermus thermophilus}
Length = 217
Score = 29.8 bits (68), Expect = 2.8
Identities = 9/50 (18%), Positives = 15/50 (30%), Gaps = 5/50 (10%)
Query: 5 QGRTLTNAIGS----LDIQNAYADALNNLGHVLEEIAEQEKDAALGNGGL 50
G + A+ + + Y L + Q +D G G L
Sbjct: 52 LGL-VNPALENGKTLVARTPRYLGGYMVLSEAYVALYRQAEDRERGKGYL 100
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus
biogenesis, TPR, superhelix, protein binding; HET: MSE;
2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Length = 252
Score = 29.9 bits (68), Expect = 2.8
Identities = 10/41 (24%), Positives = 14/41 (34%), Gaps = 5/41 (12%)
Query: 5 QGRTLTNAIGSLD----IQNAYADALNNLGHVLEEIAEQEK 41
+G A L I + ADA L V + E +
Sbjct: 50 RGN-TEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKL 89
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A
{Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Length = 125
Score = 28.5 bits (65), Expect = 3.0
Identities = 8/28 (28%), Positives = 16/28 (57%), Gaps = 1/28 (3%)
Query: 14 GSLDIQNAYADALNNLGHVLEEIAEQEK 41
G++D N A+A NLG+ + + ++
Sbjct: 1 GAMDPGN-SAEAWYNLGNAYYKQGDYDE 27
Score = 27.7 bits (63), Expect = 6.2
Identities = 10/35 (28%), Positives = 15/35 (42%), Gaps = 5/35 (14%)
Query: 5 QGRTLTNAIGS----LDIQNAYADALNNLGHVLEE 35
QG AI L++ A+A NLG+ +
Sbjct: 56 QGD-YDEAIEYYQKALELDPNNAEAWYNLGNAYYK 89
Score = 27.4 bits (62), Expect = 9.7
Identities = 10/35 (28%), Positives = 16/35 (45%), Gaps = 5/35 (14%)
Query: 5 QGRTLTNAIGS----LDIQNAYADALNNLGHVLEE 35
QG AI L++ A+A NLG+ ++
Sbjct: 90 QGD-YDEAIEYYQKALELDPNNAEAKQNLGNAKQK 123
>2wn4_A ADP-ribosyltransferase enzymatic component; CDTA, ACTIN-ADPRT,
binary toxin; 1.85A {Clostridium difficile} PDB: 2wn5_A
2wn7_A* 2wn8_A 2wn6_A*
Length = 463
Score = 29.9 bits (66), Expect = 3.4
Identities = 14/120 (11%), Positives = 33/120 (27%), Gaps = 10/120 (8%)
Query: 405 FCNPELSKIITKWLKTDQWVTNLDLLVGLRQFADNTELQAEWESAKMASKKHLADYIWRV 464
N ++ + + + T + F + E EWE +K ++
Sbjct: 28 LPNNIYAQDLQSYSEKVCNTTYKAPIERPEDFLKDKEKAKEWE------RKEAERIEQKL 81
Query: 465 TGVTIDPNSLFDIQVKRIHEYKRQLLNILGAIYRY----KKLKEMSPQERKKTTPRTIMI 520
+ + I +Y + K+ KE+ K + + +
Sbjct: 82 ERSEKEALESYKKDSVEISKYSQTRNYFYDYQIEANSREKEYKELRNAISKNKIDKPMYV 141
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 28.8 bits (63), Expect = 3.6
Identities = 6/28 (21%), Positives = 16/28 (57%), Gaps = 3/28 (10%)
Query: 229 ERKSGRQWSEFPSKVAVQLNDTHPTLAI 256
E+++ ++ + + + +D+ P LAI
Sbjct: 18 EKQALKK---LQASLKLYADDSAPALAI 42
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting
complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin,
ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Length = 330
Score = 29.2 bits (66), Expect = 5.5
Identities = 11/47 (23%), Positives = 20/47 (42%), Gaps = 6/47 (12%)
Query: 4 LQGRTLTNAIGS----LDIQNAYADALNNLGHVLEEIAEQEKDAALG 46
L G NA+ L ++ ++ LGH +E + +A +G
Sbjct: 282 LMGN-FENAVDYFHTALGLRRDDTFSVTMLGHCIEMY-IGDSEAYIG 326
>1a2z_A Pyrrolidone carboxyl peptidase; N-pyroglutamate hydrolysis; 1.73A
{Thermococcus litoralis} SCOP: c.56.4.1
Length = 220
Score = 28.7 bits (63), Expect = 5.5
Identities = 11/72 (15%), Positives = 24/72 (33%), Gaps = 1/72 (1%)
Query: 661 GAFGSYDYNPLLDSLEGNTGYGRGDYFLVGYDFP-SYLEAQDRVDQAYKDQKKWLKMSIL 719
FG NP + G+ + G P S A + + ++ K + +++
Sbjct: 10 EPFGGDSKNPTEQIAKYFDRKQIGNAMVYGRVLPVSVKRATIELKRYLEEIKPEIVINLG 69
Query: 720 STAGSGKFSSDR 731
+ +R
Sbjct: 70 LAPTYSNITVER 81
>3l9f_A Putative uncharacterized protein SMU.1604C; PADR, transcription
regulator; 1.80A {Streptococcus mutans}
Length = 204
Score = 28.7 bits (64), Expect = 5.6
Identities = 10/37 (27%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
Query: 84 ITKQGQEEVAEDWLEKFSPWEVVRHDVVFPVRFFGSV 120
IT+ G++E+A +L+ E+ + D + + F S+
Sbjct: 105 ITESGKKELAS-YLQSDVNDEIFKSDFLMRLFFGNSL 140
>3bjv_A RMPA; alpha/beta three layer sandwich, transferase; 2.40A
{Streptococcus mutans}
Length = 161
Score = 28.1 bits (63), Expect = 7.4
Identities = 6/24 (25%), Positives = 13/24 (54%)
Query: 244 AVQLNDTHPTLAIPELMRLLMDEE 267
A + H ++AIP+++ L +
Sbjct: 104 AATSSKIHTSVAIPQIIALFELDH 127
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing
protein, structur genomics, joint center for structural
genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Length = 208
Score = 28.2 bits (63), Expect = 8.3
Identities = 9/29 (31%), Positives = 12/29 (41%)
Query: 15 SLDIQNAYADALNNLGHVLEEIAEQEKDA 43
L ++ A LG+ AEQEK
Sbjct: 114 ILQLEADNLAANIFLGNYYYLTAEQEKKK 142
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 28.2 bits (62), Expect = 8.7
Identities = 11/50 (22%), Positives = 18/50 (36%), Gaps = 12/50 (24%)
Query: 613 EIRQEIGEENFFLFGAVAEQVPKLRKEREDGLFKPDPRFEEAKQFIRSGA 662
+ QE E + K R+E+ L + D + +Q R A
Sbjct: 79 RLTQE------------PESIRKWREEQRKRLQELDAASKVMEQEWREKA 116
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response,
DNA repair, gene regulation; 2.05A {Mus musculus}
Length = 474
Score = 28.4 bits (63), Expect = 8.7
Identities = 7/36 (19%), Positives = 12/36 (33%), Gaps = 4/36 (11%)
Query: 4 LQGRTLTNAIGSLD----IQNAYADALNNLGHVLEE 35
+ A L ++ +A N LG V +
Sbjct: 114 VTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWK 149
>1yg2_A Gene activator APHA; virulence factor, winged helix, transcripti
factor, transcription; 2.20A {Vibrio cholerae} SCOP:
a.4.5.61
Length = 179
Score = 27.9 bits (62), Expect = 8.7
Identities = 7/37 (18%), Positives = 15/37 (40%), Gaps = 1/37 (2%)
Query: 84 ITKQGQEEVAEDWLEKFSPWEVVRHDVVFPVRFFGSV 120
IT+ G+ + E W ++ + VR + +
Sbjct: 71 ITQAGRSALGE-WFDQPTAHPTVRDEFSAKLMACSVQ 106
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat,
consensus protein, superhelix, de novo protein; 2.30A
{Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Length = 136
Score = 27.4 bits (62), Expect = 9.1
Identities = 10/35 (28%), Positives = 15/35 (42%), Gaps = 5/35 (14%)
Query: 5 QGRTLTNAIGS----LDIQNAYADALNNLGHVLEE 35
QG AI L++ A+A NLG+ +
Sbjct: 48 QGD-YDEAIEYYQKALELDPRSAEAWYNLGNAYYK 81
>3tdw_A Gentamicin resistance protein; kinase, phosphoryl transfer,
antibiotic resistance, transfer; HET: GDP; 1.70A
{Enterococcus gallinarum} PDB: 3tdv_A*
Length = 306
Score = 28.5 bits (63), Expect = 9.4
Identities = 17/140 (12%), Positives = 36/140 (25%), Gaps = 23/140 (16%)
Query: 1 MEFLQGRTLTNAIGSLDIQNAYADALNNLGHVLEEI----AEQEKDAALGNGGLGRLASC 56
+QG+ L ++ +A L + E+ E A + L
Sbjct: 92 YRKVQGQILGEDGMAVLPDDAKDRLALQLAEFMNELSAFPVETAISAGVPVTNLKNKILL 151
Query: 57 FLDSMATLNLPAWGYGLRYRYGLFKQKITKQGQEEVAEDWLEKFSPWE---VVRHDVVFP 113
+++ P LR + ++ + H + P
Sbjct: 152 LSEAVEDQVFPLLDESLR------------DYLTLRFQSYMTHPVYTRYTPRLIHGDLSP 199
Query: 114 VRFFGSVMVNPNGTRKWVGG 133
+ N N + + G
Sbjct: 200 ----DHFLTNLNSRQTPLTG 215
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.318 0.135 0.404
Gapped
Lambda K H
0.267 0.0701 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 11,799,047
Number of extensions: 730688
Number of successful extensions: 1958
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1913
Number of HSP's successfully gapped: 59
Length of query: 749
Length of database: 6,701,793
Length adjustment: 101
Effective length of query: 648
Effective length of database: 3,881,772
Effective search space: 2515388256
Effective search space used: 2515388256
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 61 (27.3 bits)