Query 004487
Match_columns 749
No_of_seqs 788 out of 4304
Neff 10.7
Searched_HMMs 46136
Date Fri Mar 29 00:14:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004487.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/004487hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03077 Protein ECB2; Provisi 100.0 2E-146 5E-151 1265.6 86.7 741 2-747 117-857 (857)
2 PLN03081 pentatricopeptide (PP 100.0 9E-126 2E-130 1068.0 71.9 613 136-749 84-697 (697)
3 PLN03077 Protein ECB2; Provisi 100.0 2.4E-86 5.1E-91 765.9 68.4 687 35-744 49-746 (857)
4 PLN03081 pentatricopeptide (PP 100.0 3.2E-71 7E-76 624.7 54.8 474 35-511 85-561 (697)
5 PLN03218 maturation of RBCL 1; 100.0 3.3E-70 7E-75 617.0 55.1 524 3-546 367-916 (1060)
6 PLN03218 maturation of RBCL 1; 100.0 1.3E-66 2.7E-71 587.9 60.9 506 104-616 366-916 (1060)
7 TIGR02917 PEP_TPR_lipo putativ 100.0 4.5E-32 9.8E-37 321.7 65.9 579 15-607 304-898 (899)
8 TIGR02917 PEP_TPR_lipo putativ 100.0 4.8E-31 1E-35 312.9 67.0 516 83-610 305-867 (899)
9 PF14432 DYW_deaminase: DYW fa 100.0 9.4E-35 2E-39 239.8 8.0 106 616-739 2-116 (116)
10 PRK11447 cellulose synthase su 100.0 5.6E-23 1.2E-27 244.0 59.1 575 13-608 35-739 (1157)
11 PRK11447 cellulose synthase su 100.0 2E-22 4.4E-27 239.3 63.5 556 4-575 60-741 (1157)
12 PRK09782 bacteriophage N4 rece 99.9 4.1E-19 8.8E-24 201.2 60.4 561 17-610 55-707 (987)
13 PRK09782 bacteriophage N4 rece 99.9 2.9E-18 6.4E-23 194.3 56.8 579 6-611 78-742 (987)
14 KOG4626 O-linked N-acetylgluco 99.9 1.9E-18 4.2E-23 173.1 37.9 448 142-603 51-513 (966)
15 PRK11788 tetratricopeptide rep 99.8 1.3E-17 2.8E-22 176.9 31.3 290 319-616 44-354 (389)
16 KOG4626 O-linked N-acetylgluco 99.8 2.5E-17 5.3E-22 165.3 29.7 418 179-610 53-486 (966)
17 TIGR00990 3a0801s09 mitochondr 99.8 4.1E-16 8.8E-21 174.2 42.0 418 142-609 130-571 (615)
18 PRK11788 tetratricopeptide rep 99.8 4.1E-17 8.9E-22 173.1 31.7 289 249-575 44-348 (389)
19 PRK10049 pgaA outer membrane p 99.8 3.4E-14 7.3E-19 161.8 45.8 392 143-608 19-455 (765)
20 KOG2002 TPR-containing nuclear 99.8 6.7E-14 1.5E-18 148.7 43.8 538 53-610 146-746 (1018)
21 KOG2002 TPR-containing nuclear 99.8 8.4E-14 1.8E-18 148.0 44.4 574 22-611 146-800 (1018)
22 PRK15174 Vi polysaccharide exp 99.8 8.2E-15 1.8E-19 163.1 39.2 347 221-576 17-383 (656)
23 TIGR00990 3a0801s09 mitochondr 99.8 4.9E-14 1.1E-18 157.6 45.3 442 111-608 130-596 (615)
24 KOG4422 Uncharacterized conser 99.7 8.5E-14 1.8E-18 134.3 39.5 443 38-539 117-587 (625)
25 PRK10049 pgaA outer membrane p 99.7 3.6E-14 7.7E-19 161.6 42.9 363 215-610 21-423 (765)
26 PRK15174 Vi polysaccharide exp 99.7 3.8E-14 8.3E-19 157.8 38.0 324 276-610 43-382 (656)
27 PRK14574 hmsH outer membrane p 99.7 2.5E-13 5.3E-18 151.5 43.4 426 118-609 44-513 (822)
28 PRK14574 hmsH outer membrane p 99.7 5.1E-13 1.1E-17 149.0 45.6 439 84-582 45-520 (822)
29 KOG4422 Uncharacterized conser 99.7 2.9E-13 6.4E-18 130.7 32.0 266 27-322 198-480 (625)
30 KOG2076 RNA polymerase III tra 99.7 2.1E-11 4.5E-16 129.3 48.4 587 16-610 149-850 (895)
31 KOG4318 Bicoid mRNA stability 99.6 3.2E-13 6.8E-18 141.8 31.4 449 137-607 202-734 (1088)
32 KOG0495 HAT repeat protein [RN 99.6 2.4E-10 5.1E-15 116.7 47.1 509 57-623 366-892 (913)
33 KOG2003 TPR repeat-containing 99.6 2.5E-12 5.4E-17 125.0 30.7 270 319-596 428-710 (840)
34 KOG4318 Bicoid mRNA stability 99.6 1.5E-11 3.3E-16 129.4 35.8 354 238-613 202-598 (1088)
35 KOG0495 HAT repeat protein [RN 99.5 9.2E-09 2E-13 105.4 49.4 416 158-590 365-797 (913)
36 KOG2076 RNA polymerase III tra 99.5 1.7E-09 3.7E-14 115.1 44.4 516 87-606 153-766 (895)
37 PF13429 TPR_15: Tetratricopep 99.5 1.4E-13 3.1E-18 137.9 11.2 253 349-607 16-275 (280)
38 KOG0547 Translocase of outer m 99.4 9.4E-10 2E-14 108.8 33.0 212 389-607 339-564 (606)
39 KOG1915 Cell cycle control pro 99.4 2.3E-08 5E-13 98.7 41.3 480 120-608 85-624 (677)
40 KOG1155 Anaphase-promoting com 99.4 1.2E-09 2.6E-14 107.5 31.6 247 351-607 272-534 (559)
41 PRK10747 putative protoheme IX 99.4 3.2E-10 6.9E-15 119.1 29.8 225 317-575 160-391 (398)
42 KOG1126 DNA-binding cell divis 99.4 4.9E-11 1.1E-15 122.7 22.7 160 441-608 420-585 (638)
43 KOG2047 mRNA splicing factor [ 99.4 1.9E-07 4.1E-12 95.9 47.0 444 7-505 103-614 (835)
44 KOG1915 Cell cycle control pro 99.4 2.8E-09 6E-14 105.0 32.6 416 221-649 85-536 (677)
45 PRK10747 putative protoheme IX 99.4 3.2E-10 6.9E-15 119.1 28.4 274 323-607 97-388 (398)
46 KOG1126 DNA-binding cell divis 99.4 1.1E-10 2.4E-15 120.2 22.9 274 325-610 334-621 (638)
47 KOG1155 Anaphase-promoting com 99.4 8.6E-09 1.9E-13 101.6 34.3 253 349-608 235-494 (559)
48 KOG2003 TPR repeat-containing 99.3 8.2E-10 1.8E-14 107.8 26.0 256 349-609 427-689 (840)
49 TIGR00540 hemY_coli hemY prote 99.3 3.2E-09 6.9E-14 112.2 32.4 289 252-572 96-397 (409)
50 TIGR00540 hemY_coli hemY prote 99.3 1.1E-09 2.4E-14 115.7 28.6 282 220-539 95-396 (409)
51 KOG1173 Anaphase-promoting com 99.3 4.1E-09 8.9E-14 106.5 29.1 195 408-607 309-516 (611)
52 PF13429 TPR_15: Tetratricopep 99.3 1.3E-11 2.9E-16 123.7 10.7 252 315-574 13-277 (280)
53 TIGR02521 type_IV_pilW type IV 99.3 1.1E-09 2.3E-14 107.0 23.3 199 409-609 29-232 (234)
54 COG2956 Predicted N-acetylgluc 99.3 1.3E-08 2.8E-13 95.8 27.8 311 252-629 47-367 (389)
55 PF13041 PPR_2: PPR repeat fam 99.3 1.4E-11 3E-16 86.2 6.2 50 137-186 1-50 (50)
56 PF13041 PPR_2: PPR repeat fam 99.2 2.4E-11 5.2E-16 85.0 6.6 50 440-489 1-50 (50)
57 KOG2376 Signal recognition par 99.2 2.9E-07 6.3E-12 93.9 37.4 431 147-604 20-515 (652)
58 COG3071 HemY Uncharacterized e 99.2 4.6E-08 1E-12 95.2 29.4 286 253-573 97-389 (400)
59 KOG2047 mRNA splicing factor [ 99.1 9.1E-06 2E-10 83.9 43.7 559 36-608 26-686 (835)
60 COG3071 HemY Uncharacterized e 99.1 1E-07 2.3E-12 92.8 28.6 285 152-471 97-390 (400)
61 KOG1840 Kinesin light chain [C 99.1 2.3E-08 5E-13 104.5 25.4 232 376-607 199-477 (508)
62 KOG1174 Anaphase-promoting com 99.1 8.1E-07 1.8E-11 86.6 33.6 304 272-582 191-507 (564)
63 KOG0985 Vesicle coat protein c 99.1 4.2E-06 9.1E-11 90.3 41.7 570 9-606 484-1246(1666)
64 COG2956 Predicted N-acetylgluc 99.1 4.9E-08 1.1E-12 92.0 24.5 220 152-404 48-277 (389)
65 KOG3616 Selective LIM binding 99.1 1.2E-06 2.7E-11 91.0 34.2 491 19-605 457-962 (1636)
66 KOG0547 Translocase of outer m 99.1 1.1E-06 2.3E-11 87.7 32.3 218 352-576 337-568 (606)
67 PRK12370 invasion protein regu 99.0 4.3E-08 9.4E-13 107.8 24.8 244 356-610 276-536 (553)
68 KOG3785 Uncharacterized conser 99.0 2.4E-06 5.1E-11 81.7 31.0 151 427-583 339-497 (557)
69 PRK11189 lipoprotein NlpI; Pro 99.0 5.2E-08 1.1E-12 97.9 21.4 211 390-610 40-266 (296)
70 KOG1173 Anaphase-promoting com 99.0 1.3E-06 2.8E-11 88.8 30.7 281 240-557 244-534 (611)
71 KOG3616 Selective LIM binding 99.0 7.2E-05 1.6E-09 78.3 43.5 194 15-237 741-936 (1636)
72 KOG4162 Predicted calmodulin-b 99.0 7.3E-06 1.6E-10 86.6 36.5 398 203-609 317-783 (799)
73 TIGR02521 type_IV_pilW type IV 99.0 1.3E-07 2.9E-12 92.1 23.1 194 344-575 34-233 (234)
74 KOG1840 Kinesin light chain [C 99.0 1.2E-07 2.6E-12 99.3 22.6 236 310-573 199-478 (508)
75 KOG3785 Uncharacterized conser 99.0 1.1E-05 2.5E-10 77.2 33.2 192 415-611 289-492 (557)
76 PRK12370 invasion protein regu 98.9 1.1E-07 2.4E-12 104.6 22.4 211 390-609 275-502 (553)
77 KOG0985 Vesicle coat protein c 98.9 0.00014 3.1E-09 79.0 43.0 113 342-465 1105-1217(1666)
78 COG3063 PilF Tfp pilus assembl 98.9 1.3E-07 2.9E-12 85.2 17.4 161 445-611 38-204 (250)
79 KOG4162 Predicted calmodulin-b 98.9 3.9E-05 8.5E-10 81.3 37.6 492 49-580 239-788 (799)
80 KOG1156 N-terminal acetyltrans 98.9 4E-05 8.6E-10 79.6 35.4 424 86-611 20-470 (700)
81 KOG1129 TPR repeat-containing 98.9 1.8E-07 4E-12 88.1 17.1 230 345-610 227-459 (478)
82 KOG2376 Signal recognition par 98.8 0.00023 5E-09 73.4 39.9 118 44-169 19-140 (652)
83 PRK11189 lipoprotein NlpI; Pro 98.8 2.6E-06 5.6E-11 85.7 24.5 196 379-583 67-273 (296)
84 KOG1174 Anaphase-promoting com 98.8 0.00013 2.9E-09 71.6 33.6 384 208-608 96-499 (564)
85 KOG1127 TPR repeat-containing 98.7 3.8E-05 8.3E-10 83.4 32.2 277 327-608 800-1103(1238)
86 KOG3617 WD40 and TPR repeat-co 98.7 0.00061 1.3E-08 72.7 38.6 116 6-134 757-884 (1416)
87 KOG1129 TPR repeat-containing 98.7 6.7E-07 1.5E-11 84.4 15.3 226 314-544 227-461 (478)
88 PF12569 NARP1: NMDA receptor- 98.7 2.1E-05 4.6E-10 83.7 28.4 282 320-608 14-333 (517)
89 PRK04841 transcriptional regul 98.7 0.00086 1.9E-08 79.8 45.5 195 415-609 535-760 (903)
90 COG3063 PilF Tfp pilus assembl 98.7 4.5E-06 9.7E-11 75.6 19.4 192 415-609 39-236 (250)
91 PF04733 Coatomer_E: Coatomer 98.7 4.6E-07 9.9E-12 89.6 14.3 148 452-609 112-265 (290)
92 KOG1125 TPR repeat-containing 98.6 1.2E-06 2.7E-11 89.4 17.2 245 390-654 299-556 (579)
93 PF12569 NARP1: NMDA receptor- 98.6 1.2E-05 2.5E-10 85.7 25.2 256 349-611 12-293 (517)
94 KOG1156 N-terminal acetyltrans 98.6 0.0002 4.3E-09 74.7 32.5 379 188-611 21-436 (700)
95 cd05804 StaR_like StaR_like; a 98.6 9E-05 2E-09 77.4 30.6 295 313-610 9-337 (355)
96 KOG0624 dsRNA-activated protei 98.5 0.00039 8.4E-09 66.8 28.9 290 313-609 41-370 (504)
97 KOG3617 WD40 and TPR repeat-co 98.5 0.0027 5.9E-08 68.1 40.8 50 560-609 1306-1359(1416)
98 PF04733 Coatomer_E: Coatomer 98.5 5.7E-06 1.2E-10 81.9 17.5 222 344-576 38-267 (290)
99 KOG4340 Uncharacterized conser 98.5 9.7E-05 2.1E-09 69.3 23.7 388 175-608 11-442 (459)
100 PF12854 PPR_1: PPR repeat 98.5 1.5E-07 3.2E-12 58.8 3.6 33 103-135 2-34 (34)
101 KOG1070 rRNA processing protei 98.5 1.4E-05 3.1E-10 89.5 20.1 201 408-613 1455-1667(1710)
102 TIGR03302 OM_YfiO outer membra 98.4 1.9E-05 4.2E-10 76.9 19.4 180 410-609 32-232 (235)
103 KOG1914 mRNA cleavage and poly 98.4 0.0038 8.3E-08 64.0 36.6 173 357-530 347-527 (656)
104 PF12854 PPR_1: PPR repeat 98.4 4.9E-07 1.1E-11 56.5 4.3 33 406-438 2-34 (34)
105 KOG1127 TPR repeat-containing 98.4 0.00038 8.3E-09 76.0 28.2 378 209-605 492-909 (1238)
106 PRK15359 type III secretion sy 98.4 1.2E-05 2.6E-10 70.9 13.8 121 463-591 14-137 (144)
107 PRK10370 formate-dependent nit 98.3 2.8E-05 6.1E-10 72.6 16.7 118 490-610 52-174 (198)
108 KOG0548 Molecular co-chaperone 98.3 0.00055 1.2E-08 70.0 26.6 213 382-609 230-455 (539)
109 cd05804 StaR_like StaR_like; a 98.3 0.0014 3E-08 68.5 31.4 54 348-403 121-175 (355)
110 KOG4340 Uncharacterized conser 98.3 0.00015 3.3E-09 68.0 20.5 83 521-605 249-335 (459)
111 KOG0548 Molecular co-chaperone 98.3 0.0025 5.3E-08 65.4 30.3 429 147-603 10-483 (539)
112 PRK04841 transcriptional regul 98.3 0.002 4.4E-08 76.6 35.6 321 185-505 385-759 (903)
113 PRK15363 pathogenicity island 98.3 1.7E-05 3.8E-10 68.5 13.0 118 513-654 35-154 (157)
114 COG4783 Putative Zn-dependent 98.3 0.0014 2.9E-08 66.6 27.5 140 448-610 312-455 (484)
115 PLN02789 farnesyltranstransfer 98.3 0.00027 5.9E-09 71.0 22.7 181 421-606 81-299 (320)
116 KOG1128 Uncharacterized conser 98.2 3E-05 6.4E-10 81.7 15.8 217 310-576 398-618 (777)
117 KOG1125 TPR repeat-containing 98.2 6.8E-05 1.5E-09 77.1 17.9 214 286-504 296-525 (579)
118 KOG0624 dsRNA-activated protei 98.2 0.0025 5.4E-08 61.4 26.9 328 214-611 43-396 (504)
119 TIGR03302 OM_YfiO outer membra 98.2 7.6E-05 1.6E-09 72.7 17.5 182 374-576 31-234 (235)
120 PRK15359 type III secretion sy 98.2 1.8E-05 3.8E-10 69.9 11.4 99 509-610 22-122 (144)
121 PRK15179 Vi polysaccharide bio 98.2 0.00013 2.8E-09 80.9 20.1 140 440-585 84-227 (694)
122 KOG1070 rRNA processing protei 98.1 0.00061 1.3E-08 77.1 24.1 212 273-485 1455-1679(1710)
123 KOG1128 Uncharacterized conser 98.1 6.3E-05 1.4E-09 79.3 15.7 189 406-610 393-583 (777)
124 PRK10370 formate-dependent nit 98.1 0.00029 6.2E-09 65.8 18.9 155 418-585 23-183 (198)
125 TIGR00756 PPR pentatricopeptid 98.1 4.3E-06 9.3E-11 53.2 4.4 35 140-174 1-35 (35)
126 TIGR00756 PPR pentatricopeptid 98.1 5.2E-06 1.1E-10 52.8 4.7 34 443-476 1-34 (35)
127 COG5010 TadD Flp pilus assembl 98.1 0.0002 4.2E-09 66.7 16.4 135 473-610 62-198 (257)
128 COG4783 Putative Zn-dependent 98.1 0.0019 4.2E-08 65.6 23.6 178 425-608 251-436 (484)
129 COG5010 TadD Flp pilus assembl 98.0 0.00056 1.2E-08 63.8 17.6 117 483-602 106-224 (257)
130 PF09295 ChAPs: ChAPs (Chs5p-A 98.0 0.00022 4.7E-09 73.1 16.4 123 479-607 171-295 (395)
131 PRK15179 Vi polysaccharide bio 98.0 0.00081 1.8E-08 74.8 21.8 142 406-552 81-229 (694)
132 PF13812 PPR_3: Pentatricopept 98.0 1.2E-05 2.5E-10 50.8 4.3 34 139-172 1-34 (34)
133 TIGR02552 LcrH_SycD type III s 98.0 0.0001 2.3E-09 64.5 11.9 95 514-609 18-114 (135)
134 PF13812 PPR_3: Pentatricopept 98.0 1.6E-05 3.5E-10 50.1 4.6 33 443-475 2-34 (34)
135 PRK14720 transcript cleavage f 97.9 0.0028 6E-08 71.3 24.5 232 309-591 30-268 (906)
136 PF09295 ChAPs: ChAPs (Chs5p-A 97.9 0.00048 1E-08 70.7 15.9 128 412-544 170-299 (395)
137 PLN02789 farnesyltranstransfer 97.8 0.001 2.2E-08 66.9 17.4 187 416-608 42-249 (320)
138 TIGR02552 LcrH_SycD type III s 97.8 0.00065 1.4E-08 59.4 13.8 113 464-581 5-120 (135)
139 KOG3081 Vesicle coat complex C 97.8 0.013 2.9E-07 54.8 21.9 115 489-608 149-270 (299)
140 PF01535 PPR: PPR repeat; Int 97.7 4.1E-05 8.8E-10 47.0 3.6 31 140-170 1-31 (31)
141 KOG2053 Mitochondrial inherita 97.7 0.12 2.6E-06 56.8 44.0 160 444-607 438-606 (932)
142 KOG3060 Uncharacterized conser 97.7 0.0026 5.6E-08 58.9 16.3 181 424-609 25-220 (289)
143 PF09976 TPR_21: Tetratricopep 97.7 0.0013 2.8E-08 58.2 14.4 52 551-604 91-142 (145)
144 PF01535 PPR: PPR repeat; Int 97.7 5.1E-05 1.1E-09 46.5 3.7 31 443-473 1-31 (31)
145 KOG3060 Uncharacterized conser 97.7 0.0091 2E-07 55.4 19.0 163 420-586 61-231 (289)
146 KOG3081 Vesicle coat complex C 97.6 0.007 1.5E-07 56.6 17.9 148 455-610 85-237 (299)
147 cd00189 TPR Tetratricopeptide 97.6 0.00055 1.2E-08 55.2 10.1 92 516-608 3-96 (100)
148 PF09976 TPR_21: Tetratricopep 97.6 0.0032 6.8E-08 55.8 15.4 123 445-571 15-144 (145)
149 PRK14720 transcript cleavage f 97.6 0.045 9.7E-07 62.0 26.9 168 239-470 30-197 (906)
150 PLN03088 SGT1, suppressor of 97.6 0.00095 2.1E-08 68.9 13.2 82 525-607 14-97 (356)
151 PF12895 Apc3: Anaphase-promot 97.6 9.1E-05 2E-09 58.4 4.2 77 527-605 3-83 (84)
152 TIGR02795 tol_pal_ybgF tol-pal 97.5 0.0013 2.7E-08 56.0 11.1 91 518-609 7-105 (119)
153 TIGR02795 tol_pal_ybgF tol-pal 97.5 0.0019 4.2E-08 54.8 12.2 101 481-582 6-112 (119)
154 PF04840 Vps16_C: Vps16, C-ter 97.5 0.14 3.1E-06 51.5 28.8 106 416-538 182-287 (319)
155 PF13414 TPR_11: TPR repeat; P 97.5 0.00031 6.8E-09 52.9 5.9 64 544-608 2-66 (69)
156 KOG0553 TPR repeat-containing 97.5 0.00079 1.7E-08 64.1 9.5 109 460-584 76-187 (304)
157 PRK10153 DNA-binding transcrip 97.4 0.0069 1.5E-07 65.3 17.1 43 439-483 334-382 (517)
158 KOG0553 TPR repeat-containing 97.4 0.0032 6.9E-08 60.1 12.6 96 450-550 89-187 (304)
159 PRK15331 chaperone protein Sic 97.4 0.0023 5E-08 55.8 10.8 108 520-655 44-153 (165)
160 KOG1538 Uncharacterized conser 97.4 0.042 9.1E-07 57.7 21.1 196 316-573 638-845 (1081)
161 PF13432 TPR_16: Tetratricopep 97.3 0.00069 1.5E-08 50.3 6.3 58 551-609 3-60 (65)
162 PRK02603 photosystem I assembl 97.3 0.0065 1.4E-07 55.6 14.0 129 442-595 35-166 (172)
163 KOG1914 mRNA cleavage and poly 97.3 0.29 6.2E-06 50.9 40.5 211 393-606 310-536 (656)
164 KOG2053 Mitochondrial inherita 97.3 0.45 9.8E-06 52.6 43.4 212 18-235 21-252 (932)
165 CHL00033 ycf3 photosystem I as 97.2 0.0028 6.2E-08 57.8 10.7 93 513-606 35-139 (168)
166 PF05843 Suf: Suppressor of fo 97.2 0.0097 2.1E-07 59.2 15.1 143 443-590 2-150 (280)
167 PRK02603 photosystem I assembl 97.2 0.0036 7.7E-08 57.3 11.2 80 515-595 37-121 (172)
168 KOG0550 Molecular chaperone (D 97.2 0.023 5E-07 56.6 16.9 161 443-609 169-350 (486)
169 PF14938 SNAP: Soluble NSF att 97.1 0.092 2E-06 52.5 21.1 111 417-539 100-222 (282)
170 PLN03088 SGT1, suppressor of 97.1 0.0074 1.6E-07 62.3 13.3 98 488-589 13-113 (356)
171 cd00189 TPR Tetratricopeptide 97.1 0.0058 1.3E-07 48.9 10.4 58 445-504 3-61 (100)
172 KOG2041 WD40 repeat protein [G 97.1 0.56 1.2E-05 50.2 26.9 284 216-554 767-1066(1189)
173 PF04840 Vps16_C: Vps16, C-ter 97.1 0.33 7.1E-06 48.9 24.3 106 211-332 179-284 (319)
174 PF12895 Apc3: Anaphase-promot 97.1 0.0016 3.4E-08 51.3 6.3 80 455-538 2-83 (84)
175 PF14559 TPR_19: Tetratricopep 97.1 0.0013 2.9E-08 49.2 5.6 52 557-609 3-54 (68)
176 COG4700 Uncharacterized protei 97.1 0.091 2E-06 46.5 17.1 151 453-609 67-222 (251)
177 COG3898 Uncharacterized membra 97.0 0.4 8.8E-06 47.7 27.1 272 323-609 97-392 (531)
178 COG4235 Cytochrome c biogenesi 97.0 0.019 4.1E-07 55.3 14.0 102 510-612 153-259 (287)
179 PF06239 ECSIT: Evolutionarily 97.0 0.014 3E-07 53.4 12.2 123 374-511 45-173 (228)
180 PF13432 TPR_16: Tetratricopep 97.0 0.0024 5.2E-08 47.3 6.4 60 519-579 3-64 (65)
181 PF08579 RPM2: Mitochondrial r 97.0 0.0064 1.4E-07 48.9 8.8 81 39-120 27-116 (120)
182 PF10037 MRP-S27: Mitochondria 97.0 0.016 3.5E-07 60.0 14.1 121 370-490 60-186 (429)
183 KOG2280 Vacuolar assembly/sort 97.0 0.71 1.5E-05 50.1 25.8 116 474-606 681-796 (829)
184 PF08579 RPM2: Mitochondrial r 96.9 0.013 2.9E-07 47.2 10.1 79 446-525 29-116 (120)
185 PF13371 TPR_9: Tetratricopept 96.9 0.0028 6.1E-08 48.2 6.3 57 553-610 3-59 (73)
186 KOG1538 Uncharacterized conser 96.9 0.15 3.2E-06 53.8 19.5 261 37-364 556-827 (1081)
187 PF05843 Suf: Suppressor of fo 96.8 0.01 2.2E-07 59.0 11.2 129 478-609 2-136 (280)
188 CHL00033 ycf3 photosystem I as 96.8 0.066 1.4E-06 48.7 15.6 80 442-524 35-117 (168)
189 PRK10866 outer membrane biogen 96.8 0.17 3.7E-06 49.0 18.6 52 319-370 41-98 (243)
190 KOG1130 Predicted G-alpha GTPa 96.8 0.018 3.8E-07 57.2 11.6 130 479-608 197-343 (639)
191 PF10037 MRP-S27: Mitochondria 96.8 0.022 4.7E-07 59.0 13.0 110 170-279 62-177 (429)
192 PF13414 TPR_11: TPR repeat; P 96.8 0.0033 7E-08 47.3 5.4 64 513-576 3-69 (69)
193 PRK15363 pathogenicity island 96.7 0.037 8.1E-07 48.2 12.2 94 413-508 37-134 (157)
194 PF14559 TPR_19: Tetratricopep 96.7 0.0028 6.1E-08 47.4 4.6 59 489-550 3-63 (68)
195 PF12688 TPR_5: Tetratrico pep 96.7 0.041 8.8E-07 46.2 11.8 91 448-538 7-100 (120)
196 PRK10153 DNA-binding transcrip 96.6 0.072 1.6E-06 57.7 16.4 134 472-610 332-483 (517)
197 KOG2280 Vacuolar assembly/sort 96.6 1.5 3.3E-05 47.6 30.5 338 167-537 425-794 (829)
198 PF06239 ECSIT: Evolutionarily 96.6 0.02 4.3E-07 52.3 9.8 96 432-528 35-153 (228)
199 PF13431 TPR_17: Tetratricopep 96.5 0.002 4.3E-08 40.1 2.3 33 568-601 2-34 (34)
200 COG4700 Uncharacterized protei 96.5 0.071 1.5E-06 47.1 12.5 107 503-609 79-189 (251)
201 PF09205 DUF1955: Domain of un 96.5 0.38 8.2E-06 40.1 15.9 141 452-612 12-152 (161)
202 PF13281 DUF4071: Domain of un 96.5 0.38 8.3E-06 48.9 19.6 158 416-576 146-336 (374)
203 KOG2041 WD40 repeat protein [G 96.5 1.3 2.9E-05 47.5 23.6 127 121-265 747-877 (1189)
204 KOG2796 Uncharacterized conser 96.5 0.26 5.6E-06 46.3 16.5 135 345-481 181-323 (366)
205 KOG0543 FKBP-type peptidyl-pro 96.4 0.045 9.8E-07 54.8 11.8 84 545-655 257-340 (397)
206 PF12688 TPR_5: Tetratrico pep 96.4 0.04 8.6E-07 46.2 9.9 84 521-605 9-100 (120)
207 KOG2114 Vacuolar assembly/sort 96.3 2.4 5.2E-05 46.8 27.4 116 11-135 339-458 (933)
208 PRK10803 tol-pal system protei 96.3 0.031 6.7E-07 54.5 10.2 56 551-607 186-244 (263)
209 PLN03098 LPA1 LOW PSII ACCUMUL 96.2 0.021 4.4E-07 58.6 8.5 63 545-608 75-140 (453)
210 KOG2796 Uncharacterized conser 96.2 0.14 3E-06 48.0 12.8 170 9-181 139-326 (366)
211 PF07079 DUF1347: Protein of u 96.0 2.1 4.6E-05 43.8 34.4 188 413-606 300-521 (549)
212 PRK10866 outer membrane biogen 96.0 0.35 7.5E-06 46.9 15.9 172 416-607 37-239 (243)
213 PF14938 SNAP: Soluble NSF att 96.0 1.9 4.1E-05 43.0 28.6 95 445-539 158-263 (282)
214 PF13428 TPR_14: Tetratricopep 96.0 0.014 3E-07 39.1 4.2 42 546-588 2-43 (44)
215 PF12921 ATP13: Mitochondrial 95.9 0.087 1.9E-06 44.7 10.0 47 509-555 48-98 (126)
216 PF13371 TPR_9: Tetratricopept 95.9 0.026 5.7E-07 42.8 6.3 62 521-583 3-66 (73)
217 PRK10803 tol-pal system protei 95.9 0.092 2E-06 51.3 11.3 26 551-576 223-248 (263)
218 PF12921 ATP13: Mitochondrial 95.8 0.1 2.3E-06 44.2 9.9 99 411-525 2-100 (126)
219 PF03704 BTAD: Bacterial trans 95.8 0.14 2.9E-06 45.4 11.1 61 547-608 64-124 (146)
220 PF07079 DUF1347: Protein of u 95.7 3 6.5E-05 42.8 37.6 199 342-550 299-530 (549)
221 KOG4555 TPR repeat-containing 95.5 0.13 2.9E-06 42.5 8.8 88 522-610 52-145 (175)
222 PF13424 TPR_12: Tetratricopep 95.5 0.023 5E-07 43.8 4.4 62 546-607 6-73 (78)
223 PF13424 TPR_12: Tetratricopep 95.5 0.021 4.5E-07 44.1 4.2 29 545-573 46-74 (78)
224 KOG1130 Predicted G-alpha GTPa 95.1 2.6 5.7E-05 42.5 17.8 154 444-597 197-372 (639)
225 COG0457 NrfG FOG: TPR repeat [ 95.1 3.3 7.1E-05 39.4 26.8 194 411-609 59-265 (291)
226 PF04184 ST7: ST7 protein; In 95.0 0.5 1.1E-05 48.9 13.2 197 452-662 178-382 (539)
227 PRK11906 transcriptional regul 95.0 1.9 4.1E-05 44.9 17.3 157 443-604 252-431 (458)
228 KOG1258 mRNA processing protei 94.9 6.3 0.00014 42.2 30.5 182 410-595 296-490 (577)
229 PLN03098 LPA1 LOW PSII ACCUMUL 94.7 0.21 4.6E-06 51.5 9.8 62 513-574 75-141 (453)
230 KOG3941 Intermediate in Toll s 94.7 0.26 5.7E-06 46.7 9.4 100 430-530 53-175 (406)
231 PF04053 Coatomer_WDAD: Coatom 94.5 0.21 4.5E-06 52.8 9.7 132 452-610 271-403 (443)
232 PF13525 YfiO: Outer membrane 94.5 2.6 5.7E-05 39.6 16.3 141 448-609 11-170 (203)
233 PF03704 BTAD: Bacterial trans 94.4 0.43 9.4E-06 42.1 10.2 70 445-515 65-138 (146)
234 KOG1920 IkappaB kinase complex 94.3 6.8 0.00015 45.4 20.9 23 517-539 1003-1025(1265)
235 PF13525 YfiO: Outer membrane 94.1 1.3 2.8E-05 41.7 13.3 176 319-533 14-198 (203)
236 COG4235 Cytochrome c biogenesi 93.9 0.93 2E-05 44.0 11.7 26 551-576 233-258 (287)
237 PF13281 DUF4071: Domain of un 93.6 7.1 0.00015 40.0 18.0 162 447-609 146-334 (374)
238 COG5107 RNA14 Pre-mRNA 3'-end 93.6 9.9 0.00021 39.1 31.5 399 206-609 39-531 (660)
239 COG5107 RNA14 Pre-mRNA 3'-end 93.5 10 0.00022 39.0 35.1 90 24-117 27-118 (660)
240 COG3118 Thioredoxin domain-con 93.4 8.3 0.00018 37.6 17.0 155 450-606 142-299 (304)
241 PF04053 Coatomer_WDAD: Coatom 93.3 2.2 4.8E-05 45.2 14.5 101 216-333 325-425 (443)
242 PF10300 DUF3808: Protein of u 93.1 4.3 9.3E-05 43.7 16.8 158 447-608 193-375 (468)
243 PRK11906 transcriptional regul 93.1 1.7 3.7E-05 45.2 12.8 117 492-609 273-401 (458)
244 smart00299 CLH Clathrin heavy 93.0 5.6 0.00012 34.6 15.4 42 447-489 12-53 (140)
245 KOG3364 Membrane protein invol 92.9 1.1 2.5E-05 37.6 9.1 67 543-609 30-100 (149)
246 PF13512 TPR_18: Tetratricopep 92.7 2.2 4.8E-05 36.7 11.0 66 524-589 21-91 (142)
247 smart00299 CLH Clathrin heavy 92.7 6.4 0.00014 34.3 15.7 81 282-366 14-94 (140)
248 KOG2066 Vacuolar assembly/sort 92.6 20 0.00043 39.8 24.1 46 212-257 395-440 (846)
249 KOG2610 Uncharacterized conser 92.4 3.7 7.9E-05 40.4 13.1 112 424-539 116-235 (491)
250 KOG1585 Protein required for f 92.4 9.9 0.00022 35.8 16.9 87 515-603 152-250 (308)
251 COG1729 Uncharacterized protei 92.3 1.4 3.1E-05 42.2 10.3 92 445-539 145-241 (262)
252 COG3898 Uncharacterized membra 92.2 14 0.00031 37.3 26.3 209 322-539 166-389 (531)
253 KOG0543 FKBP-type peptidyl-pro 92.2 1.7 3.6E-05 44.0 11.1 138 449-609 215-355 (397)
254 COG1729 Uncharacterized protei 92.1 1.5 3.2E-05 42.1 10.2 101 479-581 144-250 (262)
255 COG4105 ComL DNA uptake lipopr 92.1 7.1 0.00015 37.2 14.4 50 321-370 45-100 (254)
256 COG0457 NrfG FOG: TPR repeat [ 91.9 11 0.00025 35.5 25.6 163 410-576 94-267 (291)
257 PF00515 TPR_1: Tetratricopept 91.8 0.27 5.9E-06 30.3 3.5 31 546-576 2-32 (34)
258 PF10300 DUF3808: Protein of u 91.7 4.2 9.1E-05 43.8 14.4 81 425-505 247-333 (468)
259 PF13512 TPR_18: Tetratricopep 91.6 6.3 0.00014 34.0 12.4 108 451-576 19-130 (142)
260 PF07719 TPR_2: Tetratricopept 91.5 0.42 9.1E-06 29.4 4.1 30 547-576 3-32 (34)
261 KOG4555 TPR repeat-containing 91.4 1.5 3.3E-05 36.5 8.1 88 486-576 52-146 (175)
262 KOG4234 TPR repeat-containing 91.2 2.1 4.6E-05 38.7 9.4 87 523-610 105-198 (271)
263 COG4785 NlpI Lipoprotein NlpI, 91.2 8.9 0.00019 35.4 13.4 159 442-609 99-266 (297)
264 PF08631 SPO22: Meiosis protei 91.2 17 0.00037 36.1 23.3 19 554-572 255-273 (278)
265 KOG2114 Vacuolar assembly/sort 91.1 30 0.00066 38.8 28.9 117 112-236 338-458 (933)
266 KOG1941 Acetylcholine receptor 91.1 9.3 0.0002 38.1 14.3 127 447-573 127-274 (518)
267 KOG2610 Uncharacterized conser 91.0 2.5 5.4E-05 41.5 10.4 161 454-617 115-284 (491)
268 KOG3941 Intermediate in Toll s 90.8 1.6 3.5E-05 41.6 8.8 98 25-123 53-173 (406)
269 PF00637 Clathrin: Region in C 90.8 0.25 5.4E-06 43.5 3.5 84 79-165 13-96 (143)
270 PF13176 TPR_7: Tetratricopept 89.9 0.58 1.2E-05 29.4 3.7 26 582-607 1-26 (36)
271 PF13170 DUF4003: Protein of u 88.9 8.5 0.00018 38.4 12.8 92 427-521 119-225 (297)
272 PRK15331 chaperone protein Sic 88.8 6.4 0.00014 34.9 10.4 82 422-504 48-132 (165)
273 KOG0550 Molecular chaperone (D 88.3 33 0.00071 35.2 21.0 149 386-539 179-347 (486)
274 PRK09687 putative lyase; Provi 88.2 29 0.00062 34.5 26.3 235 308-555 35-277 (280)
275 PF13170 DUF4003: Protein of u 88.1 18 0.0004 36.1 14.6 147 458-606 78-243 (297)
276 PF09205 DUF1955: Domain of un 88.1 15 0.00033 31.0 11.9 139 352-509 13-151 (161)
277 KOG1920 IkappaB kinase complex 87.9 63 0.0014 38.0 20.5 79 449-539 972-1052(1265)
278 PF13176 TPR_7: Tetratricopept 87.8 0.84 1.8E-05 28.7 3.4 28 547-574 1-28 (36)
279 PF13428 TPR_14: Tetratricopep 87.8 1.6 3.4E-05 28.9 4.9 33 444-478 3-35 (44)
280 COG4105 ComL DNA uptake lipopr 87.7 27 0.00058 33.5 19.6 57 552-609 174-233 (254)
281 COG4649 Uncharacterized protei 87.6 8.4 0.00018 34.2 10.1 118 453-573 69-195 (221)
282 COG3629 DnrI DNA-binding trans 87.5 3.8 8.3E-05 40.0 9.1 76 310-385 153-236 (280)
283 PF14853 Fis1_TPR_C: Fis1 C-te 87.4 4.1 8.8E-05 28.3 6.7 51 582-658 3-53 (53)
284 KOG1941 Acetylcholine receptor 87.3 9.1 0.0002 38.2 11.4 162 444-605 85-271 (518)
285 PF04184 ST7: ST7 protein; In 87.2 44 0.00095 35.4 17.1 96 481-576 263-377 (539)
286 PF09613 HrpB1_HrpK: Bacterial 87.1 21 0.00045 31.6 12.9 87 487-576 20-108 (160)
287 PRK09687 putative lyase; Provi 87.1 34 0.00073 34.0 26.3 75 307-386 203-277 (280)
288 COG3947 Response regulator con 87.0 31 0.00068 33.6 15.4 57 551-608 285-341 (361)
289 PF10602 RPN7: 26S proteasome 86.8 10 0.00022 34.6 11.1 92 446-539 40-139 (177)
290 PF02259 FAT: FAT domain; Int 86.1 33 0.00072 35.4 16.3 68 544-611 145-215 (352)
291 KOG1464 COP9 signalosome, subu 85.9 33 0.00073 32.8 16.6 243 322-570 39-328 (440)
292 PF04097 Nic96: Nup93/Nic96; 85.4 70 0.0015 36.0 25.4 49 139-189 112-160 (613)
293 PF07035 Mic1: Colon cancer-as 85.3 27 0.00059 31.2 15.9 55 315-369 94-148 (167)
294 PF13181 TPR_8: Tetratricopept 84.6 1.5 3.2E-05 26.9 3.2 30 547-576 3-32 (34)
295 PF04097 Nic96: Nup93/Nic96; 84.3 78 0.0017 35.6 19.8 86 348-438 265-354 (613)
296 PF02259 FAT: FAT domain; Int 84.1 55 0.0012 33.7 20.2 148 440-591 144-303 (352)
297 cd00923 Cyt_c_Oxidase_Va Cytoc 83.8 9.8 0.00021 30.1 7.9 50 537-587 34-83 (103)
298 COG3629 DnrI DNA-binding trans 83.7 5.2 0.00011 39.1 8.0 61 547-608 155-215 (280)
299 COG3118 Thioredoxin domain-con 83.7 47 0.001 32.6 18.1 117 386-506 144-265 (304)
300 PF00515 TPR_1: Tetratricopept 83.1 2.5 5.5E-05 25.8 3.9 31 444-476 3-33 (34)
301 PF09613 HrpB1_HrpK: Bacterial 82.6 5.4 0.00012 35.1 6.9 70 525-595 22-93 (160)
302 KOG4570 Uncharacterized conser 82.3 9.5 0.00021 37.3 8.9 100 405-506 58-164 (418)
303 COG2976 Uncharacterized protei 82.0 41 0.00089 30.8 13.7 112 460-576 70-190 (207)
304 PF07035 Mic1: Colon cancer-as 81.9 38 0.00083 30.3 14.9 53 214-266 94-146 (167)
305 TIGR02508 type_III_yscG type I 81.5 22 0.00049 28.3 9.0 62 418-482 46-107 (115)
306 KOG4648 Uncharacterized conser 81.5 2.9 6.3E-05 41.1 5.3 111 485-603 105-218 (536)
307 PF10602 RPN7: 26S proteasome 81.0 22 0.00048 32.4 10.7 94 412-505 37-141 (177)
308 KOG1258 mRNA processing protei 79.4 99 0.0021 33.6 29.1 129 36-168 44-180 (577)
309 PF13762 MNE1: Mitochondrial s 79.3 22 0.00048 30.9 9.4 78 110-187 41-128 (145)
310 PF07719 TPR_2: Tetratricopept 79.1 4.2 9.1E-05 24.7 3.9 27 444-470 3-29 (34)
311 KOG2066 Vacuolar assembly/sort 78.8 1.2E+02 0.0026 34.1 23.9 48 110-157 394-441 (846)
312 PF13374 TPR_10: Tetratricopep 78.7 3.6 7.8E-05 26.5 3.7 28 581-608 3-30 (42)
313 PF11207 DUF2989: Protein of u 78.2 12 0.00027 34.3 7.9 76 524-600 118-198 (203)
314 TIGR02561 HrpB1_HrpK type III 78.1 11 0.00024 32.6 7.1 51 558-609 23-73 (153)
315 PF02284 COX5A: Cytochrome c o 77.7 12 0.00025 30.0 6.5 51 536-587 36-86 (108)
316 KOG4279 Serine/threonine prote 77.6 50 0.0011 36.6 13.2 182 344-580 204-400 (1226)
317 PF02284 COX5A: Cytochrome c o 77.5 18 0.00039 29.0 7.5 60 460-521 28-87 (108)
318 cd00923 Cyt_c_Oxidase_Va Cytoc 77.0 21 0.00046 28.3 7.7 63 457-521 22-84 (103)
319 TIGR02508 type_III_yscG type I 76.9 35 0.00077 27.3 8.8 87 88-178 20-106 (115)
320 KOG0276 Vesicle coat complex C 76.7 21 0.00046 38.3 10.1 99 220-335 648-746 (794)
321 PRK15180 Vi polysaccharide bio 76.5 14 0.0003 38.3 8.5 118 455-576 302-422 (831)
322 PRK10941 hypothetical protein; 75.9 19 0.00041 35.3 9.2 62 547-609 183-244 (269)
323 PF07721 TPR_4: Tetratricopept 75.9 3.7 8E-05 23.4 2.7 23 582-604 3-25 (26)
324 PF13929 mRNA_stabil: mRNA sta 75.9 33 0.00072 33.6 10.5 106 457-562 143-255 (292)
325 PRK11619 lytic murein transgly 75.4 1.5E+02 0.0033 33.6 32.4 115 455-572 254-373 (644)
326 KOG1498 26S proteasome regulat 75.3 1E+02 0.0022 31.6 14.4 110 518-631 136-263 (439)
327 PF13181 TPR_8: Tetratricopept 75.0 6.2 0.00013 24.0 3.8 28 581-608 2-29 (34)
328 PF00637 Clathrin: Region in C 75.0 2.5 5.4E-05 37.0 2.7 84 180-266 13-96 (143)
329 TIGR02561 HrpB1_HrpK type III 74.6 26 0.00056 30.5 8.4 65 487-556 20-88 (153)
330 KOG0276 Vesicle coat complex C 73.4 34 0.00074 36.9 10.5 100 320-436 647-746 (794)
331 KOG0890 Protein kinase of the 73.4 2.9E+02 0.0062 35.8 31.1 63 545-610 1670-1732(2382)
332 KOG4570 Uncharacterized conser 73.1 19 0.0004 35.4 8.0 102 102-204 58-165 (418)
333 KOG2063 Vacuolar assembly/sort 72.8 1.9E+02 0.0042 33.6 23.4 58 9-66 310-375 (877)
334 PF13929 mRNA_stabil: mRNA sta 72.8 39 0.00085 33.1 10.1 121 40-163 134-262 (292)
335 PF13374 TPR_10: Tetratricopep 72.5 7.6 0.00016 24.9 4.0 28 546-573 3-30 (42)
336 PRK15180 Vi polysaccharide bio 72.4 68 0.0015 33.6 12.1 140 488-633 300-442 (831)
337 PF13174 TPR_6: Tetratricopept 71.7 5.3 0.00012 24.0 2.9 28 582-609 2-29 (33)
338 COG4785 NlpI Lipoprotein NlpI, 71.4 10 0.00022 35.1 5.5 87 487-576 75-164 (297)
339 PF11207 DUF2989: Protein of u 71.0 39 0.00085 31.2 9.2 74 459-533 123-198 (203)
340 KOG1586 Protein required for f 70.9 97 0.0021 29.4 13.7 58 519-576 119-185 (288)
341 KOG4648 Uncharacterized conser 70.7 19 0.0004 35.8 7.5 86 449-545 104-198 (536)
342 PF07575 Nucleopor_Nup85: Nup8 70.5 1.2E+02 0.0027 33.7 15.2 26 37-63 149-174 (566)
343 PF14853 Fis1_TPR_C: Fis1 C-te 70.3 10 0.00022 26.4 4.2 32 551-583 7-38 (53)
344 smart00028 TPR Tetratricopepti 70.1 8.6 0.00019 22.2 3.7 29 548-576 4-32 (34)
345 PRK12798 chemotaxis protein; R 70.0 1.4E+02 0.0031 31.0 24.3 205 424-656 125-347 (421)
346 PF13431 TPR_17: Tetratricopep 69.7 4.2 9.1E-05 25.1 2.0 21 513-533 13-33 (34)
347 PF13934 ELYS: Nuclear pore co 67.7 1E+02 0.0022 29.4 12.0 71 483-557 114-184 (226)
348 KOG0376 Serine-threonine phosp 66.9 14 0.0003 38.7 6.1 85 523-608 14-100 (476)
349 COG4455 ImpE Protein of avirul 66.8 20 0.00044 33.2 6.4 60 517-576 5-66 (273)
350 COG1747 Uncharacterized N-term 66.4 1.9E+02 0.0041 31.0 19.7 49 374-424 64-112 (711)
351 PF13174 TPR_6: Tetratricopept 66.3 9 0.00019 22.9 3.1 26 551-576 6-31 (33)
352 KOG1550 Extracellular protein 66.0 1.1E+02 0.0024 33.9 13.6 85 528-614 343-431 (552)
353 PF06552 TOM20_plant: Plant sp 65.7 72 0.0016 28.9 9.5 45 561-613 96-140 (186)
354 KOG1585 Protein required for f 65.6 1.3E+02 0.0028 28.8 11.9 55 551-605 156-215 (308)
355 PHA02875 ankyrin repeat protei 65.4 1.2E+02 0.0026 32.1 13.6 77 48-133 10-90 (413)
356 COG4649 Uncharacterized protei 65.0 1.1E+02 0.0023 27.6 15.4 118 421-539 68-193 (221)
357 PF09986 DUF2225: Uncharacteri 64.7 30 0.00065 32.7 7.6 65 546-610 119-195 (214)
358 KOG0890 Protein kinase of the 64.5 4.3E+02 0.0093 34.4 24.7 318 80-438 1390-1729(2382)
359 PHA02875 ankyrin repeat protei 63.9 2E+02 0.0044 30.4 18.6 148 216-376 72-230 (413)
360 PF09477 Type_III_YscG: Bacter 63.5 80 0.0017 25.7 8.7 79 391-472 21-99 (116)
361 KOG1308 Hsp70-interacting prot 62.0 6.2 0.00014 39.1 2.5 87 526-613 127-215 (377)
362 PF08631 SPO22: Meiosis protei 61.7 1.7E+02 0.0038 29.0 24.1 20 450-469 254-273 (278)
363 PF10345 Cohesin_load: Cohesin 61.7 2.8E+02 0.006 31.3 32.3 45 321-365 372-428 (608)
364 PF10366 Vps39_1: Vacuolar sor 61.0 44 0.00095 27.5 7.0 26 344-369 42-67 (108)
365 PF10579 Rapsyn_N: Rapsyn N-te 60.8 28 0.00061 26.5 5.2 44 455-498 19-64 (80)
366 PF09670 Cas_Cas02710: CRISPR- 59.1 1.5E+02 0.0032 31.1 12.3 121 452-573 141-269 (379)
367 PF11768 DUF3312: Protein of u 59.0 87 0.0019 33.8 10.4 24 415-438 412-435 (545)
368 TIGR03504 FimV_Cterm FimV C-te 57.7 24 0.00053 23.4 4.0 25 448-472 5-29 (44)
369 KOG0292 Vesicle coat complex C 57.0 16 0.00035 41.0 4.8 96 484-604 627-722 (1202)
370 PF06552 TOM20_plant: Plant sp 56.8 43 0.00093 30.3 6.6 61 458-523 51-123 (186)
371 TIGR03504 FimV_Cterm FimV C-te 56.7 27 0.00059 23.1 4.1 24 347-370 5-28 (44)
372 PF10579 Rapsyn_N: Rapsyn N-te 54.4 38 0.00082 25.8 5.0 47 489-535 18-65 (80)
373 PF11838 ERAP1_C: ERAP1-like C 52.1 2.7E+02 0.0058 28.2 16.0 100 490-589 143-245 (324)
374 PF04910 Tcf25: Transcriptiona 51.9 2.9E+02 0.0063 28.6 12.9 65 544-608 99-167 (360)
375 COG5159 RPN6 26S proteasome re 51.7 2.4E+02 0.0053 27.6 11.7 51 450-500 11-68 (421)
376 PF12862 Apc5: Anaphase-promot 51.5 40 0.00086 26.8 5.3 54 555-608 8-69 (94)
377 PF10345 Cohesin_load: Cohesin 51.4 4.1E+02 0.0088 30.0 34.0 57 551-607 540-604 (608)
378 PF09477 Type_III_YscG: Bacter 51.3 1.3E+02 0.0029 24.5 7.9 80 87-169 20-99 (116)
379 KOG4642 Chaperone-dependent E3 50.8 1.9E+02 0.0042 27.6 9.9 81 421-503 20-104 (284)
380 COG3947 Response regulator con 50.6 2.6E+02 0.0057 27.6 14.2 56 517-572 283-340 (361)
381 KOG0403 Neoplastic transformat 49.6 3.4E+02 0.0073 28.6 19.6 57 315-371 514-573 (645)
382 COG5159 RPN6 26S proteasome re 49.5 2.7E+02 0.0058 27.4 11.7 92 482-573 130-234 (421)
383 PF11846 DUF3366: Domain of un 49.2 63 0.0014 29.9 7.1 29 510-538 141-169 (193)
384 KOG4077 Cytochrome c oxidase, 47.7 1.3E+02 0.0028 25.4 7.4 71 460-541 67-137 (149)
385 PF11846 DUF3366: Domain of un 47.0 60 0.0013 30.1 6.5 37 540-576 139-175 (193)
386 smart00386 HAT HAT (Half-A-TPR 46.5 35 0.00077 20.0 3.4 29 559-588 1-29 (33)
387 PRK13800 putative oxidoreducta 46.4 5.9E+02 0.013 30.5 24.3 61 511-572 787-847 (897)
388 cd08819 CARD_MDA5_2 Caspase ac 46.1 1.4E+02 0.0031 23.3 7.1 39 423-462 48-86 (88)
389 PF10366 Vps39_1: Vacuolar sor 45.7 1.3E+02 0.0029 24.6 7.5 28 241-268 40-67 (108)
390 KOG4234 TPR repeat-containing 44.9 1.9E+02 0.0042 26.7 8.7 23 554-576 177-199 (271)
391 COG1747 Uncharacterized N-term 44.7 4.3E+02 0.0093 28.4 24.2 156 343-505 68-233 (711)
392 COG2909 MalT ATP-dependent tra 44.7 5.6E+02 0.012 29.7 25.2 219 320-539 425-685 (894)
393 KOG4077 Cytochrome c oxidase, 44.6 1E+02 0.0022 26.0 6.3 48 538-586 77-124 (149)
394 KOG4521 Nuclear pore complex, 44.2 5.2E+02 0.011 31.0 13.8 20 419-438 928-947 (1480)
395 PF08225 Antimicrobial19: Pseu 43.9 13 0.00029 19.6 0.9 12 710-721 10-21 (23)
396 KOG0545 Aryl-hydrocarbon recep 43.8 1.5E+02 0.0032 28.4 8.1 54 555-609 240-293 (329)
397 KOG4642 Chaperone-dependent E3 43.6 72 0.0016 30.3 6.1 68 540-608 38-106 (284)
398 KOG4507 Uncharacterized conser 43.4 1.1E+02 0.0023 33.2 8.0 98 490-591 620-721 (886)
399 PF11848 DUF3368: Domain of un 42.6 81 0.0018 21.3 4.8 34 149-182 12-45 (48)
400 PRK10564 maltose regulon perip 41.8 51 0.0011 32.6 5.1 41 444-484 259-299 (303)
401 PF11848 DUF3368: Domain of un 41.5 1E+02 0.0023 20.8 5.2 33 453-485 13-45 (48)
402 PF07163 Pex26: Pex26 protein; 41.5 2E+02 0.0043 28.2 8.8 86 145-232 89-181 (309)
403 PF07163 Pex26: Pex26 protein; 40.9 2.4E+02 0.0052 27.7 9.2 20 247-266 90-109 (309)
404 KOG3807 Predicted membrane pro 40.8 3.6E+02 0.0079 27.0 10.6 54 448-503 281-337 (556)
405 KOG2422 Uncharacterized conser 40.7 3.1E+02 0.0068 29.9 10.8 53 554-606 351-404 (665)
406 KOG2062 26S proteasome regulat 40.5 6E+02 0.013 28.9 30.9 153 45-202 67-238 (929)
407 PF06957 COPI_C: Coatomer (COP 40.1 1.4E+02 0.003 31.4 8.3 41 536-576 289-331 (422)
408 KOG0551 Hsp90 co-chaperone CNS 40.1 1.4E+02 0.003 30.0 7.7 86 520-606 88-179 (390)
409 cd08819 CARD_MDA5_2 Caspase ac 39.8 1.7E+02 0.0038 22.8 6.6 65 92-158 21-85 (88)
410 PF14561 TPR_20: Tetratricopep 39.5 60 0.0013 25.6 4.4 38 568-606 11-48 (90)
411 PRK13342 recombination factor 39.3 4.9E+02 0.011 27.6 14.7 167 154-335 152-330 (413)
412 PF11663 Toxin_YhaV: Toxin wit 38.9 31 0.00067 29.3 2.8 33 453-487 106-138 (140)
413 KOG0991 Replication factor C, 38.8 3.6E+02 0.0077 25.8 9.9 48 430-478 227-274 (333)
414 PF11663 Toxin_YhaV: Toxin wit 38.6 40 0.00088 28.6 3.4 32 151-184 107-138 (140)
415 PF12862 Apc5: Anaphase-promot 38.6 92 0.002 24.7 5.5 25 551-575 47-71 (94)
416 PF14689 SPOB_a: Sensor_kinase 38.2 49 0.0011 23.9 3.4 30 579-608 22-51 (62)
417 KOG2063 Vacuolar assembly/sort 37.4 7.5E+02 0.016 29.1 17.5 128 344-488 507-637 (877)
418 PF04910 Tcf25: Transcriptiona 37.4 4.9E+02 0.011 27.0 17.6 88 485-576 111-224 (360)
419 PF14689 SPOB_a: Sensor_kinase 37.1 75 0.0016 23.0 4.2 25 480-504 26-50 (62)
420 KOG0991 Replication factor C, 35.2 4.1E+02 0.0089 25.4 14.9 165 417-611 136-301 (333)
421 COG4976 Predicted methyltransf 34.5 74 0.0016 30.0 4.7 54 523-576 5-60 (287)
422 PF13762 MNE1: Mitochondrial s 34.5 3.2E+02 0.0069 23.9 11.5 49 441-489 78-127 (145)
423 PF04034 DUF367: Domain of unk 34.5 2.9E+02 0.0062 23.4 7.7 58 514-571 67-125 (127)
424 KOG2659 LisH motif-containing 34.4 3E+02 0.0066 26.1 8.7 91 445-538 29-128 (228)
425 smart00638 LPD_N Lipoprotein N 34.3 7E+02 0.015 27.9 22.3 62 107-170 309-371 (574)
426 PRK10941 hypothetical protein; 33.8 3.9E+02 0.0084 26.4 9.9 59 446-506 185-244 (269)
427 PF07720 TPR_3: Tetratricopept 33.5 89 0.0019 19.6 3.6 29 548-576 4-34 (36)
428 PF14863 Alkyl_sulf_dimr: Alky 33.3 1.7E+02 0.0037 25.5 6.5 66 530-599 58-123 (141)
429 COG4455 ImpE Protein of avirul 33.2 4.3E+02 0.0093 25.0 12.0 121 444-576 3-136 (273)
430 PF15161 Neuropep_like: Neurop 32.8 19 0.00042 24.7 0.6 17 704-721 11-27 (65)
431 PRK10564 maltose regulon perip 31.7 76 0.0016 31.4 4.6 42 137-178 254-296 (303)
432 KOG2300 Uncharacterized conser 31.5 6.8E+02 0.015 26.9 18.8 211 226-436 299-552 (629)
433 PF08311 Mad3_BUB1_I: Mad3/BUB 31.3 3.3E+02 0.0071 23.1 8.2 42 460-501 81-123 (126)
434 KOG3824 Huntingtin interacting 30.9 87 0.0019 30.8 4.7 57 525-582 128-186 (472)
435 PF08967 DUF1884: Domain of un 30.4 59 0.0013 24.7 2.8 26 641-666 9-34 (85)
436 PRK11619 lytic murein transgly 30.1 8.7E+02 0.019 27.6 39.1 189 414-613 315-509 (644)
437 PF14561 TPR_20: Tetratricopep 29.9 2.8E+02 0.006 21.9 8.5 63 544-606 21-85 (90)
438 PF10255 Paf67: RNA polymerase 29.7 1.2E+02 0.0025 31.8 5.9 54 553-606 130-190 (404)
439 COG2976 Uncharacterized protei 29.6 4.6E+02 0.01 24.3 15.6 56 417-472 132-189 (207)
440 cd00280 TRFH Telomeric Repeat 29.4 2.9E+02 0.0064 25.2 7.3 14 493-506 85-98 (200)
441 PF13934 ELYS: Nuclear pore co 29.4 5.1E+02 0.011 24.7 12.8 114 423-546 90-205 (226)
442 COG2909 MalT ATP-dependent tra 29.2 9.7E+02 0.021 27.9 24.0 164 444-611 459-649 (894)
443 PF04190 DUF410: Protein of un 28.9 5.6E+02 0.012 25.1 19.4 83 409-506 88-170 (260)
444 TIGR02328 conserved hypothetic 28.2 68 0.0015 26.2 2.9 26 640-665 48-73 (120)
445 COG5108 RPO41 Mitochondrial DN 28.1 2.6E+02 0.0057 30.9 8.0 47 447-493 33-81 (1117)
446 KOG1464 COP9 signalosome, subu 28.0 5.7E+02 0.012 24.9 17.9 119 353-471 39-174 (440)
447 COG5108 RPO41 Mitochondrial DN 27.8 4.7E+02 0.01 29.1 9.7 24 280-303 33-56 (1117)
448 PF11838 ERAP1_C: ERAP1-like C 27.7 6.4E+02 0.014 25.3 19.1 24 326-349 56-81 (324)
449 PF11525 CopK: Copper resistan 27.6 23 0.0005 25.7 0.3 20 725-744 8-27 (73)
450 COG0735 Fur Fe2+/Zn2+ uptake r 26.6 3E+02 0.0065 24.1 7.1 41 449-489 27-67 (145)
451 PRK11639 zinc uptake transcrip 26.5 2E+02 0.0043 26.0 6.2 62 468-531 17-78 (169)
452 PF02847 MA3: MA3 domain; Int 25.9 2.1E+02 0.0044 23.5 5.9 21 316-336 8-28 (113)
453 PF10155 DUF2363: Uncharacteri 25.5 4.2E+02 0.0092 22.5 9.3 114 20-136 3-126 (126)
454 PF11817 Foie-gras_1: Foie gra 25.4 2.4E+02 0.0051 27.4 7.0 17 487-503 188-204 (247)
455 PF12069 DUF3549: Protein of u 25.4 7.4E+02 0.016 25.3 11.9 93 316-411 172-265 (340)
456 PF07575 Nucleopor_Nup85: Nup8 24.9 4.3E+02 0.0092 29.5 9.7 28 6-34 149-176 (566)
457 PF14044 NETI: NETI protein 24.9 67 0.0015 22.5 2.1 18 646-663 10-27 (57)
458 cd08326 CARD_CASP9 Caspase act 24.4 2.1E+02 0.0046 22.2 5.1 59 94-156 20-78 (84)
459 KOG1586 Protein required for f 23.6 6.6E+02 0.014 24.1 19.2 68 522-589 163-240 (288)
460 PF11817 Foie-gras_1: Foie gra 23.6 4E+02 0.0088 25.8 8.2 55 448-502 184-243 (247)
461 PF10475 DUF2450: Protein of u 23.5 2.9E+02 0.0063 27.6 7.4 52 215-268 104-155 (291)
462 PF04190 DUF410: Protein of un 23.5 7.1E+02 0.015 24.4 18.5 111 148-259 19-140 (260)
463 PF07064 RIC1: RIC1; InterPro 23.1 7.2E+02 0.016 24.3 13.9 83 522-610 162-250 (258)
464 PF12069 DUF3549: Protein of u 23.1 8.2E+02 0.018 25.0 11.8 95 113-210 171-266 (340)
465 KOG3824 Huntingtin interacting 23.0 1.4E+02 0.0031 29.4 4.6 51 555-606 126-176 (472)
466 cd08326 CARD_CASP9 Caspase act 22.9 3.3E+02 0.0071 21.2 5.9 39 423-461 42-80 (84)
467 KOG3507 DNA-directed RNA polym 22.6 27 0.00058 24.4 -0.1 12 706-717 20-31 (62)
468 PF09454 Vps23_core: Vps23 cor 22.4 2.3E+02 0.0049 20.8 4.6 48 440-488 6-53 (65)
469 PRK14956 DNA polymerase III su 22.3 1E+03 0.022 25.9 11.2 38 173-210 247-284 (484)
470 COG2178 Predicted RNA-binding 21.9 6.4E+02 0.014 23.3 8.9 50 422-471 40-98 (204)
471 PF04090 RNA_pol_I_TF: RNA pol 21.5 6.7E+02 0.014 23.4 10.8 91 547-638 43-134 (199)
472 PF08311 Mad3_BUB1_I: Mad3/BUB 21.4 5.1E+02 0.011 22.0 8.5 58 478-538 66-124 (126)
473 PF02607 B12-binding_2: B12 bi 21.2 1.5E+02 0.0033 22.3 3.8 39 453-491 12-50 (79)
474 TIGR02414 pepN_proteo aminopep 21.2 1.4E+03 0.031 27.1 14.8 152 446-602 676-836 (863)
475 COG0790 FOG: TPR repeat, SEL1 21.2 8E+02 0.017 24.2 16.6 181 425-613 55-270 (292)
476 PLN03192 Voltage-dependent pot 21.0 1.4E+03 0.03 27.0 13.8 197 93-299 476-676 (823)
477 PF14669 Asp_Glu_race_2: Putat 21.0 6.7E+02 0.015 23.2 14.8 29 230-258 97-125 (233)
478 COG5191 Uncharacterized conser 20.9 2.3E+02 0.0049 28.2 5.5 72 512-584 106-180 (435)
479 PF14669 Asp_Glu_race_2: Putat 20.9 6.7E+02 0.015 23.2 14.3 94 333-436 99-206 (233)
480 PF10475 DUF2450: Protein of u 20.8 4E+02 0.0086 26.6 7.7 52 316-369 104-155 (291)
481 PRK14958 DNA polymerase III su 20.6 8.8E+02 0.019 26.6 10.8 20 153-172 259-278 (509)
482 PRK11639 zinc uptake transcrip 20.5 3.5E+02 0.0075 24.4 6.5 31 146-176 32-62 (169)
483 PF02847 MA3: MA3 domain; Int 20.5 1.6E+02 0.0034 24.2 4.1 22 245-266 7-28 (113)
484 KOG1550 Extracellular protein 20.4 1.2E+03 0.026 25.9 17.3 19 250-268 259-277 (552)
485 PRK13800 putative oxidoreducta 20.1 1.5E+03 0.033 27.0 26.0 183 308-505 696-880 (897)
486 smart00804 TAP_C C-terminal do 20.0 94 0.002 22.6 2.2 25 50-74 38-62 (63)
No 1
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=2.1e-146 Score=1265.59 Aligned_cols=741 Identities=37% Similarity=0.657 Sum_probs=732.4
Q ss_pred CCCCcchhHHHHHHHHcCCChHHHHHHHhcCCCCCcchHHHHHHHHHcCCChhHHHHHHHHhHhcCCCCCCcchHHHHHH
Q 004487 2 PNQNTVSTNMLISGYVKSGNLATARELFNSMVDRTAVSWTILIGGYSQKNQFREAFKLFVDMRTDGGSDPDYVTFATLLS 81 (749)
Q Consensus 2 ~~~~~~~~~~ll~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~g~~p~~~~~~~ll~ 81 (749)
+.+++.++|+||++|+++|++++|.++|++|++||+++||+||.+|++.|++++|+++|++|... |+.||..||+++++
T Consensus 117 ~~~~~~~~n~li~~~~~~g~~~~A~~~f~~m~~~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~-g~~Pd~~t~~~ll~ 195 (857)
T PLN03077 117 PSLGVRLGNAMLSMFVRFGELVHAWYVFGKMPERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWA-GVRPDVYTFPCVLR 195 (857)
T ss_pred CCCCchHHHHHHHHHHhCCChHHHHHHHhcCCCCCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHc-CCCCChhHHHHHHH
Confidence 56889999999999999999999999999999999999999999999999999999999999998 99999999999999
Q ss_pred hcCCCCChHHHHHHHHHHHHhCCCCchhHHHHHHHHhHcCCChhHHHHHHccCCCCCcchHHHHHHHHHhCCChhHHHHH
Q 004487 82 GCSEPDTANELIQVHADIIKFGYNSILIICNSLVDSYCKIRCLDLARRVFKEMPQKDSVSFNALITGFAKEGLNEEAIKL 161 (749)
Q Consensus 82 ~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~l 161 (749)
+|+..+++..+.++|..+.+.|+.||+.++|+||.+|+++|+++.|.++|++|++||.++||+||.+|++.|++++|+++
T Consensus 196 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~~d~~s~n~li~~~~~~g~~~eAl~l 275 (857)
T PLN03077 196 TCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLEL 275 (857)
T ss_pred HhCCccchhhHHHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCCCCCcchhHHHHHHHHhCCCHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHCCCCCChhhHHHHHHHHhCCCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHcCCChHHHHHHHccCCCCCcc
Q 004487 162 FVEMQHLGFKPSDFTFAAALSAGVGLADIALGRQVHAFVVKTNFVENVFVANALLDLYSKHDCVVEARKLFGEMPEVDGV 241 (749)
Q Consensus 162 ~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~~~ 241 (749)
|++|.+.|+.||..||+.++.+|++.|+++.|+++|..+.+.|+.||..+||+|+.+|+++|++++|.++|++|+.+|++
T Consensus 276 f~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~~ 355 (857)
T PLN03077 276 FFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAV 355 (857)
T ss_pred HHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCcchHHHHHHHHHccCChHHHHHHHHHHHHhcCCcchhHHHHHHHHHH
Q 004487 242 SYNVMITCYAWNEQYKESLKLFRELQFTRFDRSQFPFSTLLSVVANKLDLQIGRQIHTQTIVTTAISEVKVANSLVDMYA 321 (749)
Q Consensus 242 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~ 321 (749)
+||+||.+|++.|++++|+++|++|.+.|+.||..||++++.+|++.|+++.|.++|+.+.+.|+.++..++|+|+++|+
T Consensus 356 s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~ 435 (857)
T PLN03077 356 SWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYS 435 (857)
T ss_pred eHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCHHHHHHHHHhcCCCCcccHHHHHHHHHhCCChhHHHHHHHHHHHCCCCcCHHhHHHHHHHhcccCcHHHHHHHHHH
Q 004487 322 KCGRFEEAKEIFANLSHISTVPWTAMISAYVQKGNLEEALNLFIEMCRANISADQATFASILRASAELASLSLGKQLHSF 401 (749)
Q Consensus 322 ~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~ 401 (749)
++|++++|.++|++|.++|+++||+||.+|+++|+.++|+.+|++|.. ++.||..||+++|.+|++.|+++.++++|..
T Consensus 436 k~g~~~~A~~vf~~m~~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~ 514 (857)
T PLN03077 436 KCKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAH 514 (857)
T ss_pred HcCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHH
Confidence 999999999999999999999999999999999999999999999986 6999999999999999999999999999999
Q ss_pred HHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 004487 402 VIRSGFMSNVFSGSALLDMYAKSGSLKDAIQTFKEMPERNIVSWNALISACAQNGDAQATLKSFEDMVQSGYQPDSVSLL 481 (749)
Q Consensus 402 ~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~ 481 (749)
+.+.|+.++..++|+|+++|+|+|++++|.++|+.+ ++|+++||+||.+|+++|+.++|+++|++|.+.|+.||.+||+
T Consensus 515 ~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~-~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~ 593 (857)
T PLN03077 515 VLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH-EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFI 593 (857)
T ss_pred HHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc-CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHH
Confidence 999999999999999999999999999999999999 9999999999999999999999999999999999999999999
Q ss_pred HHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCH
Q 004487 482 SVLSACSHCGLIEEGLQYFNSMTQKYKLRPKKEHYASMVDILCRSGCFDEAEKLMAQMPFEPDEIMWSSVINSCRIHKNL 561 (749)
Q Consensus 482 ~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~ 561 (749)
.++.+|++.|++++|.++|+.|.+++|+.|+..+|++|+++|+|.|++++|.+++++|+++||..+|++|+.+|+.+|+.
T Consensus 594 ~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m~~~pd~~~~~aLl~ac~~~~~~ 673 (857)
T PLN03077 594 SLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMPITPDPAVWGALLNACRIHRHV 673 (857)
T ss_pred HHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCh
Confidence 99999999999999999999999888999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCCCCCchhHHHHHHHHHHcCCchhHHHHHHHHHhCCCccCCceeEEEeCCEEEEEEeCCCCCcChHH
Q 004487 562 EFAKKAADQLFKMEKLRDAAPYVAMSNIYAVAGQWESVSQVKKAMRERGVRKVTAYSWVELKSKVHVFTANDELHPQTNE 641 (749)
Q Consensus 562 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~s~~~~~~~~~~f~~~~~~~~~~~~ 641 (749)
+.|+.+.+++++++| .+...|+.|+++|+..|+|++|.++++.|+++|++|+||+|||++++++|.|.+||.+||+.++
T Consensus 674 e~~e~~a~~l~~l~p-~~~~~y~ll~n~ya~~g~~~~a~~vr~~M~~~g~~k~~g~s~ie~~~~~~~f~~~d~~h~~~~~ 752 (857)
T PLN03077 674 ELGELAAQHIFELDP-NSVGYYILLCNLYADAGKWDEVARVRKTMRENGLTVDPGCSWVEVKGKVHAFLTDDESHPQIKE 752 (857)
T ss_pred HHHHHHHHHHHhhCC-CCcchHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCCCCccEEEECCEEEEEecCCCCCcchHH
Confidence 999999999999999 9999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHcCCcCCCCcccccCchhhhhHhHhhhHHHHHHHHhhccCCCCCcEEEEeccccCcchhHHHHHhhh
Q 004487 642 IRRKIENLMQEMKKEGYKPDTSCALHDEDEEIKVESLKYHSERLAIAFALINTPEGSPILVMKNLRACTDCHAAIKLISK 721 (749)
Q Consensus 642 ~~~~l~~l~~~m~~~g~~pd~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~~~~~~~nl~~c~~~h~~~~~~s~ 721 (749)
||.+|++|..+|++.||.||+..++ ++++++|+..+++||||||+|||||+||+|+||||+||||||+|||+++||||+
T Consensus 753 i~~~l~~l~~~~~~~g~~~~~~~~~-~~~~~~k~~~~~~hse~la~a~~l~~~~~~~~i~i~knlr~c~dch~~~k~~s~ 831 (857)
T PLN03077 753 INTVLEGFYEKMKASGLAGSESSSM-DEIEVSKDDIFCGHSERLAIAFGLINTVPGMPIWVTKNLYMCENCHNTVKFISK 831 (857)
T ss_pred HHHHHHHHHHHHHhCCcCCCcchhc-cccHHHHHHHHHhccHHHHHHHhhhcCCCCCeEEEeCCCEeCccHHHHHHHHHH
Confidence 9999999999999999999999988 447889999999999999999999999999999999999999999999999999
Q ss_pred ccCceEEEccCCccccccccccCCCC
Q 004487 722 ITGREITVRDSSRFHHFKDGFCSCRD 747 (749)
Q Consensus 722 ~~~~~~~~~d~~~~h~~~~g~~s~~~ 747 (749)
+++|+|||||.+|||||+||+|||||
T Consensus 832 ~~~r~i~~rd~~rfh~f~~g~csc~d 857 (857)
T PLN03077 832 IVRREISVRDTEQFHHFKDGECSCGD 857 (857)
T ss_pred HhCeEEEEecCCcceeCCCCcccCCC
Confidence 99999999999999999999999998
No 2
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=9.2e-126 Score=1068.00 Aligned_cols=613 Identities=37% Similarity=0.651 Sum_probs=606.2
Q ss_pred CCCcchHHHHHHHHHhCCChhHHHHHHHHHHHCC-CCCChhhHHHHHHHHhCCCChHHHHHHHHHHHHcCCCCChhHHHH
Q 004487 136 QKDSVSFNALITGFAKEGLNEEAIKLFVEMQHLG-FKPSDFTFAAALSAGVGLADIALGRQVHAFVVKTNFVENVFVANA 214 (749)
Q Consensus 136 ~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g-~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ 214 (749)
.++.++|+.+|.++.+.|++++|+++|+.|...+ ..||..||+.++.+|++.++++.+.++|..+.+.|+.||..++|.
T Consensus 84 ~~~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~ 163 (697)
T PLN03081 84 RKSGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNR 163 (697)
T ss_pred CCCceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHH
Confidence 3577899999999999999999999999999865 789999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCChHHHHHHHccCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCcchHHHHHHHHHccCChHHH
Q 004487 215 LLDLYSKHDCVVEARKLFGEMPEVDGVSYNVMITCYAWNEQYKESLKLFRELQFTRFDRSQFPFSTLLSVVANKLDLQIG 294 (749)
Q Consensus 215 Li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a 294 (749)
|+++|+++|++++|.++|++|++||+++||++|.+|++.|++++|+++|++|.+.|+.|+..||+.++.+|+..+..+.+
T Consensus 164 Li~~y~k~g~~~~A~~lf~~m~~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~ 243 (697)
T PLN03081 164 VLLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAG 243 (697)
T ss_pred HHHHHhcCCCHHHHHHHHhcCCCCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCcchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCCcccHHHHHHHHHhCCChhHHHHHHHHHHHCCCCc
Q 004487 295 RQIHTQTIVTTAISEVKVANSLVDMYAKCGRFEEAKEIFANLSHISTVPWTAMISAYVQKGNLEEALNLFIEMCRANISA 374 (749)
Q Consensus 295 ~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p 374 (749)
+++|..+.+.|+.+|..++++|+++|+++|++++|.++|++|.++|+++||+||.+|++.|+.++|+++|++|.+.|+.|
T Consensus 244 ~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~p 323 (697)
T PLN03081 244 QQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSI 323 (697)
T ss_pred HHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHhHHHHHHHhcccCcHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCcchHHHHHHHHHh
Q 004487 375 DQATFASILRASAELASLSLGKQLHSFVIRSGFMSNVFSGSALLDMYAKSGSLKDAIQTFKEMPERNIVSWNALISACAQ 454 (749)
Q Consensus 375 ~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~ 454 (749)
|..||++++.+|++.|.++.|+++|..+.+.|+.||..++++|+++|+++|++++|.++|++|.++|+.+||+||.+|++
T Consensus 324 d~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~d~~t~n~lI~~y~~ 403 (697)
T PLN03081 324 DQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGYGN 403 (697)
T ss_pred CHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCCCCeeeHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHHcCCHHHHHH
Q 004487 455 NGDAQATLKSFEDMVQSGYQPDSVSLLSVLSACSHCGLIEEGLQYFNSMTQKYKLRPKKEHYASMVDILCRSGCFDEAEK 534 (749)
Q Consensus 455 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~ 534 (749)
+|+.++|+++|++|.+.|+.||.+||+.++.+|++.|++++|.++|+.|.+++|+.|+..+|++|+++|++.|++++|.+
T Consensus 404 ~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~ 483 (697)
T PLN03081 404 HGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYA 483 (697)
T ss_pred cCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHH
Confidence 99999999999999999999999999999999999999999999999999889999999999999999999999999999
Q ss_pred HHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHcCCchhHHHHHHHHHhCCCccC
Q 004487 535 LMAQMPFEPDEIMWSSVINSCRIHKNLEFAKKAADQLFKMEKLRDAAPYVAMSNIYAVAGQWESVSQVKKAMRERGVRKV 614 (749)
Q Consensus 535 ~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~ 614 (749)
++++|+++|+..+|++|+.+|+.+|+++.|+.+++++++++| .+..+|..|+++|++.|+|++|.++++.|+++|+++.
T Consensus 484 ~~~~~~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p-~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~g~~k~ 562 (697)
T PLN03081 484 MIRRAPFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMGP-EKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGLSMH 562 (697)
T ss_pred HHHHCCCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCC-CCCcchHHHHHHHHhCCCHHHHHHHHHHHHHcCCccC
Confidence 999999999999999999999999999999999999999999 8999999999999999999999999999999999999
Q ss_pred CceeEEEeCCEEEEEEeCCCCCcChHHHHHHHHHHHHHHHHcCCcCCCCcccccCchhhhhHhHhhhHHHHHHHHhhccC
Q 004487 615 TAYSWVELKSKVHVFTANDELHPQTNEIRRKIENLMQEMKKEGYKPDTSCALHDEDEEIKVESLKYHSERLAIAFALINT 694 (749)
Q Consensus 615 ~~~s~~~~~~~~~~f~~~~~~~~~~~~~~~~l~~l~~~m~~~g~~pd~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~ 694 (749)
||+||+++++++|.|.+||.+||+..+|+.++.++..+|++.||.||+.+++|++++++|+..+.+||||||+|||||+|
T Consensus 563 ~g~s~i~~~~~~~~f~~~d~~h~~~~~i~~~l~~l~~~~~~~gy~~~~~~~~~~~~~~~~~~~~~~hsekla~a~~l~~~ 642 (697)
T PLN03081 563 PACTWIEVKKQDHSFFSGDRLHPQSREIYQKLDELMKEISEYGYVAEENELLPDVDEDEEKVSGRYHSEKLAIAFGLINT 642 (697)
T ss_pred CCeeEEEECCeEEEEccCCCCCccHHHHHHHHHHHHHHHHHcCCCCCcchhhccccHHHHHHHHHhccHHHHHHhhCccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCcEEEEeccccCcchhHHHHHhhhccCceEEEccCCccccccccccCCCCCC
Q 004487 695 PEGSPILVMKNLRACTDCHAAIKLISKITGREITVRDSSRFHHFKDGFCSCRDFW 749 (749)
Q Consensus 695 ~~~~~~~~~~nl~~c~~~h~~~~~~s~~~~~~~~~~d~~~~h~~~~g~~s~~~~w 749 (749)
|||+||||+||||||+|||+|+||||++++|+|||||.+|||||+||+|||||||
T Consensus 643 ~~~~~i~i~knlr~c~dch~~~k~~s~~~~r~i~~rd~~rfh~f~~g~csc~d~w 697 (697)
T PLN03081 643 SEWTPLQITQSHRICKDCHKVIKFIALVTKREIVVRDASRFHHFKLGKCSCGDYW 697 (697)
T ss_pred CCCCeEEEecCCEECCCchhhHHHHhhhcceEEEEecCCccccCCCCcccccccC
Confidence 9999999999999999999999999999999999999999999999999999999
No 3
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=2.4e-86 Score=765.91 Aligned_cols=687 Identities=25% Similarity=0.361 Sum_probs=617.8
Q ss_pred CCcchHHHHHHHHHcCCChhHHHHHHHHhHhcCCCCCCcchHHHHHHhcCCCCChHHHHHHHHHHHHhCCCCchhHHHHH
Q 004487 35 RTAVSWTILIGGYSQKNQFREAFKLFVDMRTDGGSDPDYVTFATLLSGCSEPDTANELIQVHADIIKFGYNSILIICNSL 114 (749)
Q Consensus 35 ~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l 114 (749)
++..++|.++.+|++.|++++|+.+|+.|.+. |++|+..+|..++.+|.+.+.+..|.++|+.+.+.|..++..++|+|
T Consensus 49 ~~~~~~n~~i~~l~~~g~~~~A~~l~~~m~~~-g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~n~l 127 (857)
T PLN03077 49 SSTHDSNSQLRALCSHGQLEQALKLLESMQEL-RVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHPSLGVRLGNAM 127 (857)
T ss_pred cchhhHHHHHHHHHhCCCHHHHHHHHHHHHhc-CCCCChhHHHHHHHHHhhCCCHHHHHHHHHHHHHcCCCCCchHHHHH
Confidence 46778999999999999999999999999998 99999999999999999999999999999999999999999999999
Q ss_pred HHHhHcCCChhHHHHHHccCCCCCcchHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHhCCCChHHHH
Q 004487 115 VDSYCKIRCLDLARRVFKEMPQKDSVSFNALITGFAKEGLNEEAIKLFVEMQHLGFKPSDFTFAAALSAGVGLADIALGR 194 (749)
Q Consensus 115 i~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~ 194 (749)
|.+|+++|+++.|.++|++|++||+++||+||.+|++.|++++|+++|++|...|+.||..||+.++++|+..+++..++
T Consensus 128 i~~~~~~g~~~~A~~~f~~m~~~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~~ 207 (857)
T PLN03077 128 LSMFVRFGELVHAWYVFGKMPERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGR 207 (857)
T ss_pred HHHHHhCCChHHHHHHHhcCCCCCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchhhHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCCCChhHHHHHHHHHHcCCChHHHHHHHccCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC
Q 004487 195 QVHAFVVKTNFVENVFVANALLDLYSKHDCVVEARKLFGEMPEVDGVSYNVMITCYAWNEQYKESLKLFRELQFTRFDRS 274 (749)
Q Consensus 195 ~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~ 274 (749)
++|..+++.|+.||..++|+|+.+|+++|++++|.++|++|+.+|+++||+||.+|++.|++++|+++|++|...|+.||
T Consensus 208 ~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd 287 (857)
T PLN03077 208 EVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPD 287 (857)
T ss_pred HHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCCCCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchHHHHHHHHHccCChHHHHHHHHHHHHhcCCcchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCCcccHHHHHHHHHhC
Q 004487 275 QFPFSTLLSVVANKLDLQIGRQIHTQTIVTTAISEVKVANSLVDMYAKCGRFEEAKEIFANLSHISTVPWTAMISAYVQK 354 (749)
Q Consensus 275 ~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~ 354 (749)
..||+.++.+|+..|+.+.|.++|..+.+.|+.||..+||+|+++|+++|++++|.++|++|..+|.++||+||.+|++.
T Consensus 288 ~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~~s~n~li~~~~~~ 367 (857)
T PLN03077 288 LMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKN 367 (857)
T ss_pred hhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeeHHHHHHHHHhC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CChhHHHHHHHHHHHCCCCcCHHhHHHHHHHhcccCcHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHH
Q 004487 355 GNLEEALNLFIEMCRANISADQATFASILRASAELASLSLGKQLHSFVIRSGFMSNVFSGSALLDMYAKSGSLKDAIQTF 434 (749)
Q Consensus 355 g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~ 434 (749)
|++++|+++|++|.+.|+.||..||++++.+|++.|+++.|.++|+.+.+.|+.++..++|+|+++|+++|++++|.++|
T Consensus 368 g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf 447 (857)
T PLN03077 368 GLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVF 447 (857)
T ss_pred CCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChH
Q 004487 435 KEMPERNIVSWNALISACAQNGDAQATLKSFEDMVQSGYQPDSVSLLSVLSACSHCGLIEEGLQYFNSMTQKYKLRPKKE 514 (749)
Q Consensus 435 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~ 514 (749)
++|.++|+++||+||.+|+++|+.++|+++|++|.. +++||..||+.++.+|++.|.++.+.+++..+.+. |+.|+..
T Consensus 448 ~~m~~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~-g~~~~~~ 525 (857)
T PLN03077 448 HNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRT-GIGFDGF 525 (857)
T ss_pred HhCCCCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHh-CCCccce
Confidence 999999999999999999999999999999999986 59999999999999999999999999999999865 9999999
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHcC
Q 004487 515 HYASMVDILCRSGCFDEAEKLMAQMPFEPDEIMWSSVINSCRIHKNLEFAKKAADQLFKMEKLRDAAPYVAMSNIYAVAG 594 (749)
Q Consensus 515 ~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 594 (749)
++++|+++|+++|++++|.++|+++ .||..+|++++.+|.++|+.++|.++|++|.+.+..||..+|..++.+|.+.|
T Consensus 526 ~~naLi~~y~k~G~~~~A~~~f~~~--~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g 603 (857)
T PLN03077 526 LPNALLDLYVRCGRMNYAWNQFNSH--EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSG 603 (857)
T ss_pred echHHHHHHHHcCCHHHHHHHHHhc--CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcC
Confidence 9999999999999999999999998 79999999999999999999999999999999888789999999999999999
Q ss_pred CchhHHHHHHHHH-hCCCccCCceeEEEeCCEEEEEEeCCCCCcChHHHHHHHHHHHHHHHHcCCcCCCCcccccCchhh
Q 004487 595 QWESVSQVKKAMR-ERGVRKVTAYSWVELKSKVHVFTANDELHPQTNEIRRKIENLMQEMKKEGYKPDTSCALHDEDEEI 673 (749)
Q Consensus 595 ~~~~a~~~~~~m~-~~g~~~~~~~s~~~~~~~~~~f~~~~~~~~~~~~~~~~l~~l~~~m~~~g~~pd~~~~~~~~~~~~ 673 (749)
++++|.++++.|+ +.|+.++...-.. .+....... .+++..+.+++.+..||...|..-+..+.
T Consensus 604 ~v~ea~~~f~~M~~~~gi~P~~~~y~~--------lv~~l~r~G-------~~~eA~~~~~~m~~~pd~~~~~aLl~ac~ 668 (857)
T PLN03077 604 MVTQGLEYFHSMEEKYSITPNLKHYAC--------VVDLLGRAG-------KLTEAYNFINKMPITPDPAVWGALLNACR 668 (857)
T ss_pred hHHHHHHHHHHHHHHhCCCCchHHHHH--------HHHHHHhCC-------CHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Confidence 9999999999998 6687664210000 000000001 12344444555578999877655444443
Q ss_pred hhHhHhhhHHHHH-HHHhhccCCCCCcEEEEeccccCcchhHHHHHhhhccCce---------EEEccCCcccccccccc
Q 004487 674 KVESLKYHSERLA-IAFALINTPEGSPILVMKNLRACTDCHAAIKLISKITGRE---------ITVRDSSRFHHFKDGFC 743 (749)
Q Consensus 674 ~~~~~~~~~~~la-~~~~~~~~~~~~~~~~~~nl~~c~~~h~~~~~~s~~~~~~---------~~~~d~~~~h~~~~g~~ 743 (749)
..+-+. -.|+.| ..+.+.|...+.-+.+.+-....|+-.++.+....|..+. |-+ .+..|-|..|--
T Consensus 669 ~~~~~e-~~e~~a~~l~~l~p~~~~~y~ll~n~ya~~g~~~~a~~vr~~M~~~g~~k~~g~s~ie~--~~~~~~f~~~d~ 745 (857)
T PLN03077 669 IHRHVE-LGELAAQHIFELDPNSVGYYILLCNLYADAGKWDEVARVRKTMRENGLTVDPGCSWVEV--KGKVHAFLTDDE 745 (857)
T ss_pred HcCChH-HHHHHHHHHHhhCCCCcchHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCCCCccEEEE--CCEEEEEecCCC
Confidence 221110 112222 2345656555555444444557888889988888776662 222 246777766644
Q ss_pred C
Q 004487 744 S 744 (749)
Q Consensus 744 s 744 (749)
|
T Consensus 746 ~ 746 (857)
T PLN03077 746 S 746 (857)
T ss_pred C
Confidence 3
No 4
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=3.2e-71 Score=624.73 Aligned_cols=474 Identities=25% Similarity=0.394 Sum_probs=458.1
Q ss_pred CCcchHHHHHHHHHcCCChhHHHHHHHHhHhcCCCCCCcchHHHHHHhcCCCCChHHHHHHHHHHHHhCCCCchhHHHHH
Q 004487 35 RTAVSWTILIGGYSQKNQFREAFKLFVDMRTDGGSDPDYVTFATLLSGCSEPDTANELIQVHADIIKFGYNSILIICNSL 114 (749)
Q Consensus 35 ~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l 114 (749)
++.++|+.+|.+|.+.|++++|+++|+.|...++..||..+|+.++.+|++.++++.+.++|..|.+.|+.||+.++|.|
T Consensus 85 ~~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~L 164 (697)
T PLN03081 85 KSGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRV 164 (697)
T ss_pred CCceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHH
Confidence 46779999999999999999999999999986468899999999999999999999999999999999999999999999
Q ss_pred HHHhHcCCChhHHHHHHccCCCCCcchHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHhCCCChHHHH
Q 004487 115 VDSYCKIRCLDLARRVFKEMPQKDSVSFNALITGFAKEGLNEEAIKLFVEMQHLGFKPSDFTFAAALSAGVGLADIALGR 194 (749)
Q Consensus 115 i~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~ 194 (749)
+.+|+++|+++.|+++|++|++||.++||++|.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.++.+.++
T Consensus 165 i~~y~k~g~~~~A~~lf~~m~~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~ 244 (697)
T PLN03081 165 LLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQ 244 (697)
T ss_pred HHHHhcCCCHHHHHHHHhcCCCCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCCCChhHHHHHHHHHHcCCChHHHHHHHccCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC
Q 004487 195 QVHAFVVKTNFVENVFVANALLDLYSKHDCVVEARKLFGEMPEVDGVSYNVMITCYAWNEQYKESLKLFRELQFTRFDRS 274 (749)
Q Consensus 195 ~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~ 274 (749)
++|..+.+.|+.+|..++|+|+++|+++|++++|.++|++|+.+|+++||+||.+|++.|++++|+++|++|...|+.||
T Consensus 245 ~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd 324 (697)
T PLN03081 245 QLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSID 324 (697)
T ss_pred HHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchHHHHHHHHHccCChHHHHHHHHHHHHhcCCcchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCCcccHHHHHHHHHhC
Q 004487 275 QFPFSTLLSVVANKLDLQIGRQIHTQTIVTTAISEVKVANSLVDMYAKCGRFEEAKEIFANLSHISTVPWTAMISAYVQK 354 (749)
Q Consensus 275 ~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~ 354 (749)
..||++++.+|++.|.++.|.++|..+.+.|+.+|..++++|+++|+++|++++|.++|++|.++|+++||+||.+|++.
T Consensus 325 ~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~d~~t~n~lI~~y~~~ 404 (697)
T PLN03081 325 QFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGYGNH 404 (697)
T ss_pred HHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CChhHHHHHHHHHHHCCCCcCHHhHHHHHHHhcccCcHHHHHHHHHHHHH-hCCCCchhHHHHHHHHHHhcCCHHHHHHH
Q 004487 355 GNLEEALNLFIEMCRANISADQATFASILRASAELASLSLGKQLHSFVIR-SGFMSNVFSGSALLDMYAKSGSLKDAIQT 433 (749)
Q Consensus 355 g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~li~~y~~~g~~~~A~~~ 433 (749)
|+.++|+++|++|.+.|+.||..||++++.+|++.|.+++|.+++..|.+ .|+.|+..+|++++++|++.|++++|.++
T Consensus 405 G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~ 484 (697)
T PLN03081 405 GRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAM 484 (697)
T ss_pred CCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHH
Confidence 99999999999999999999999999999999999999999999999986 69999999999999999999999999999
Q ss_pred HhhCC-CCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCC
Q 004487 434 FKEMP-ERNIVSWNALISACAQNGDAQATLKSFEDMVQSGYQPD-SVSLLSVLSACSHCGLIEEGLQYFNSMTQKYKLRP 511 (749)
Q Consensus 434 ~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p 511 (749)
|++|+ +|+..+|++|+.+|..+|+.+.|..+++++.+ +.|+ ..+|..+++.|++.|++++|.++++.|.++ |+.+
T Consensus 485 ~~~~~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~--~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~-g~~k 561 (697)
T PLN03081 485 IRRAPFKPTVNMWAALLTACRIHKNLELGRLAAEKLYG--MGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRK-GLSM 561 (697)
T ss_pred HHHCCCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhC--CCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHc-CCcc
Confidence 99997 68999999999999999999999999999875 5665 458999999999999999999999999865 7654
No 5
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=3.3e-70 Score=617.04 Aligned_cols=524 Identities=18% Similarity=0.238 Sum_probs=479.5
Q ss_pred CCCcchhHHHHHHHHcCCChHHHHHHHhcCCCCCcc-----hHHHHHHHHHcCCChhHHHHHHHHhHhcCCCCCCcchHH
Q 004487 3 NQNTVSTNMLISGYVKSGNLATARELFNSMVDRTAV-----SWTILIGGYSQKNQFREAFKLFVDMRTDGGSDPDYVTFA 77 (749)
Q Consensus 3 ~~~~~~~~~ll~~~~~~g~~~~A~~~f~~~~~~~~~-----~~~~li~~~~~~g~~~~a~~l~~~m~~~~g~~p~~~~~~ 77 (749)
.++...|..++..|+++|++++|+++|+.|+.++.+ .++.++.+|.+.|..++|+++|+.|.. ||..+|+
T Consensus 367 ~~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~-----pd~~Tyn 441 (1060)
T PLN03218 367 KRKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN-----PTLSTFN 441 (1060)
T ss_pred CCCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC-----CCHHHHH
Confidence 467788999999999999999999999999887655 455677889999999999999999853 9999999
Q ss_pred HHHHhcCCCCChHHHHHHHHHHHHhCCCCchhHHHHHHHHhHcCCChhHHHHHHccCC----CCCcchHHHHHHHHHhCC
Q 004487 78 TLLSGCSEPDTANELIQVHADIIKFGYNSILIICNSLVDSYCKIRCLDLARRVFKEMP----QKDSVSFNALITGFAKEG 153 (749)
Q Consensus 78 ~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~----~~~~~~~~~li~~~~~~g 153 (749)
.+|.+|++.|+++.|.++|+.|.+.|+.||..+||+||.+|+++|+++.|.++|++|. .||.++||+||.+|++.|
T Consensus 442 ~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G 521 (1060)
T PLN03218 442 MLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAG 521 (1060)
T ss_pred HHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCc
Confidence 9999999999999999999999999999999999999999999999999999999998 489999999999999999
Q ss_pred ChhHHHHHHHHHHHCCCCCChhhHHHHHHHHhCCCChHHHHHHHHHHHH--cCCCCChhHHHHHHHHHHcCCChHHHHHH
Q 004487 154 LNEEAIKLFVEMQHLGFKPSDFTFAAALSAGVGLADIALGRQVHAFVVK--TNFVENVFVANALLDLYSKHDCVVEARKL 231 (749)
Q Consensus 154 ~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~--~g~~~~~~~~~~Li~~y~~~g~~~~A~~~ 231 (749)
++++|+++|++|.+.|+.||..||+.+|.+|++.|+++.|.++++.|.+ .|+.||..+|++||.+|+++|++++|.++
T Consensus 522 ~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~el 601 (1060)
T PLN03218 522 QVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEV 601 (1060)
T ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHH
Confidence 9999999999999999999999999999999999999999999999986 67899999999999999999999999999
Q ss_pred HccCCC----CCcchHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCcchHHHHHHHHHccCChHHHHHHHHHHHHhcCC
Q 004487 232 FGEMPE----VDGVSYNVMITCYAWNEQYKESLKLFRELQFTRFDRSQFPFSTLLSVVANKLDLQIGRQIHTQTIVTTAI 307 (749)
Q Consensus 232 f~~~~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~ 307 (749)
|+.|.+ ++..+||++|.+|++.|++++|+++|++|...|+.||..||+.++.+|++.|+++.|.+++..|.+.|+.
T Consensus 602 f~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~ 681 (1060)
T PLN03218 602 YQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIK 681 (1060)
T ss_pred HHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCC
Confidence 999976 5679999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchhHHHHHHHHHHhcCCHHHHHHHHHhcC----CCCcccHHHHHHHHHhCCChhHHHHHHHHHHHCCCCcCHHhHHHHH
Q 004487 308 SEVKVANSLVDMYAKCGRFEEAKEIFANLS----HISTVPWTAMISAYVQKGNLEEALNLFIEMCRANISADQATFASIL 383 (749)
Q Consensus 308 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll 383 (749)
|+..+|++|+++|+++|++++|.++|++|. .+|.++||+||.+|++.|++++|+++|++|...|+.||..||++++
T Consensus 682 pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL 761 (1060)
T PLN03218 682 LGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILL 761 (1060)
T ss_pred CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 999999999999999999999999999995 5888999999999999999999999999999999999999999999
Q ss_pred HHhcccCcHHHHHHHHHHHHHhCCCCchhHHHHHHHHHH----hcCCHHHHHHHHhhCCCCCcchHHHHHHHHHhcCCHH
Q 004487 384 RASAELASLSLGKQLHSFVIRSGFMSNVFSGSALLDMYA----KSGSLKDAIQTFKEMPERNIVSWNALISACAQNGDAQ 459 (749)
Q Consensus 384 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~----~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 459 (749)
.+|++.|+++.|.++|..|.+.|+.||..+|++|+.++. ++++..++...|+.+...+...| .+
T Consensus 762 ~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w------------~~ 829 (1060)
T PLN03218 762 VASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKW------------TS 829 (1060)
T ss_pred HHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccch------------HH
Confidence 999999999999999999999999999999999998743 34444444444443333333344 35
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHhC
Q 004487 460 ATLKSFEDMVQSGYQPDSVSLLSVLSACSHCGLIEEGLQYFNSMTQKYKLRPKKEHYASMVDILCRSGCFDEAEKLMAQM 539 (749)
Q Consensus 460 ~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~ 539 (749)
+|+.+|++|++.|+.||..||+.++.++...+..+.+..+++.|... +..|+..+|+++|+++++. .++|..++++|
T Consensus 830 ~Al~lf~eM~~~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~-~~~~~~~~y~~Li~g~~~~--~~~A~~l~~em 906 (1060)
T PLN03218 830 WALMVYRETISAGTLPTMEVLSQVLGCLQLPHDATLRNRLIENLGIS-ADSQKQSNLSTLVDGFGEY--DPRAFSLLEEA 906 (1060)
T ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHhcccccHHHHHHHHHHhccC-CCCcchhhhHHHHHhhccC--hHHHHHHHHHH
Confidence 69999999999999999999999998887888888888888777644 6778889999999988432 46899999998
Q ss_pred ---CCCCCHH
Q 004487 540 ---PFEPDEI 546 (749)
Q Consensus 540 ---~~~p~~~ 546 (749)
++.|+..
T Consensus 907 ~~~Gi~p~~~ 916 (1060)
T PLN03218 907 ASLGVVPSVS 916 (1060)
T ss_pred HHcCCCCCcc
Confidence 7778754
No 6
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=1.3e-66 Score=587.94 Aligned_cols=506 Identities=13% Similarity=0.188 Sum_probs=464.4
Q ss_pred CCCchhHHHHHHHHhHcCCChhHHHHHHccCCCCCcch-----HHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHH
Q 004487 104 YNSILIICNSLVDSYCKIRCLDLARRVFKEMPQKDSVS-----FNALITGFAKEGLNEEAIKLFVEMQHLGFKPSDFTFA 178 (749)
Q Consensus 104 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~-----~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~ 178 (749)
..++...|..++..++++|++++|.++|++|++++... ++.++.+|.+.|..++|+++|+.|.. ||..||+
T Consensus 366 ~~~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~----pd~~Tyn 441 (1060)
T PLN03218 366 GKRKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN----PTLSTFN 441 (1060)
T ss_pred CCCCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC----CCHHHHH
Confidence 35677788889999999999999999999998766554 45667779999999999999998874 8999999
Q ss_pred HHHHHHhCCCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHcCCChHHHHHHHccCC----CCCcchHHHHHHHHHhcC
Q 004487 179 AALSAGVGLADIALGRQVHAFVVKTNFVENVFVANALLDLYSKHDCVVEARKLFGEMP----EVDGVSYNVMITCYAWNE 254 (749)
Q Consensus 179 ~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~----~~~~~~~~~li~~~~~~g 254 (749)
.+|.+|++.|+++.|.++|+.|.+.|+.||..+|++||.+|+++|++++|.++|++|. .||.++|++||.+|++.|
T Consensus 442 ~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G 521 (1060)
T PLN03218 442 MLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAG 521 (1060)
T ss_pred HHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCc
Confidence 9999999999999999999999999999999999999999999999999999999998 489999999999999999
Q ss_pred ChhHHHHHHHHHHHCCCCCCcchHHHHHHHHHccCChHHHHHHHHHHHH--hcCCcchhHHHHHHHHHHhcCCHHHHHHH
Q 004487 255 QYKESLKLFRELQFTRFDRSQFPFSTLLSVVANKLDLQIGRQIHTQTIV--TTAISEVKVANSLVDMYAKCGRFEEAKEI 332 (749)
Q Consensus 255 ~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~--~g~~~~~~~~~~li~~~~~~g~~~~A~~~ 332 (749)
++++|+++|++|...|+.||..||+.++.+|++.|+++.|.+++..|.+ .|+.||..+|++|+++|+++|++++|.++
T Consensus 522 ~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~el 601 (1060)
T PLN03218 522 QVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEV 601 (1060)
T ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHH
Confidence 9999999999999999999999999999999999999999999999987 67899999999999999999999999999
Q ss_pred HHhcCCC----CcccHHHHHHHHHhCCChhHHHHHHHHHHHCCCCcCHHhHHHHHHHhcccCcHHHHHHHHHHHHHhCCC
Q 004487 333 FANLSHI----STVPWTAMISAYVQKGNLEEALNLFIEMCRANISADQATFASILRASAELASLSLGKQLHSFVIRSGFM 408 (749)
Q Consensus 333 ~~~~~~~----~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 408 (749)
|+.|.+. +..+||++|.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|+++.|.+++..|.+.|+.
T Consensus 602 f~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~ 681 (1060)
T PLN03218 602 YQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIK 681 (1060)
T ss_pred HHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCC
Confidence 9999864 457799999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CchhHHHHHHHHHHhcCCHHHHHHHHhhCC----CCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 004487 409 SNVFSGSALLDMYAKSGSLKDAIQTFKEMP----ERNIVSWNALISACAQNGDAQATLKSFEDMVQSGYQPDSVSLLSVL 484 (749)
Q Consensus 409 ~~~~~~~~li~~y~~~g~~~~A~~~~~~~~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll 484 (749)
|+..+|++||++|+++|++++|.++|++|. .||+.+||+||.+|++.|++++|+++|++|.+.|+.||..||+.++
T Consensus 682 pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL 761 (1060)
T PLN03218 682 LGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILL 761 (1060)
T ss_pred CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 999999999999999999999999999995 6999999999999999999999999999999999999999999999
Q ss_pred HHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHH----HcC-------------------CHHHHHHHHHhC--
Q 004487 485 SACSHCGLIEEGLQYFNSMTQKYKLRPKKEHYASMVDILC----RSG-------------------CFDEAEKLMAQM-- 539 (749)
Q Consensus 485 ~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~----~~g-------------------~~~~A~~~~~~~-- 539 (749)
.+|++.|++++|.++|+.|.+. |+.||..+|+++++++. +++ ..++|..+|++|
T Consensus 762 ~a~~k~G~le~A~~l~~~M~k~-Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~eM~~ 840 (1060)
T PLN03218 762 VASERKDDADVGLDLLSQAKED-GIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYRETIS 840 (1060)
T ss_pred HHHHHCCCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHHHHHHHHH
Confidence 9999999999999999999865 99999999999997643 222 236799999999
Q ss_pred -CCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHcCCchhHHHHHHHHHhCCCccCCc
Q 004487 540 -PFEPDEIMWSSVINSCRIHKNLEFAKKAADQLFKMEKLRDAAPYVAMSNIYAVAGQWESVSQVKKAMRERGVRKVTA 616 (749)
Q Consensus 540 -~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~ 616 (749)
++.||..+|++++.++...+..+.+..+++.+......++..+|..|++.+.+. .++|..++++|.+.|+.++..
T Consensus 841 ~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~~~~~~~~~y~~Li~g~~~~--~~~A~~l~~em~~~Gi~p~~~ 916 (1060)
T PLN03218 841 AGTLPTMEVLSQVLGCLQLPHDATLRNRLIENLGISADSQKQSNLSTLVDGFGEY--DPRAFSLLEEAASLGVVPSVS 916 (1060)
T ss_pred CCCCCCHHHHHHHHHHhcccccHHHHHHHHHHhccCCCCcchhhhHHHHHhhccC--hHHHHHHHHHHHHcCCCCCcc
Confidence 899999999999987778889999999998877655447899999999988322 368999999999999987653
No 7
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=4.5e-32 Score=321.71 Aligned_cols=579 Identities=11% Similarity=0.032 Sum_probs=362.8
Q ss_pred HHHcCCChHHHHHHHhcCCC---CCcchHHHHHHHHHcCCChhHHHHHHHHhHhcCCCCCCcchHHHHHHhcCCCCChHH
Q 004487 15 GYVKSGNLATARELFNSMVD---RTAVSWTILIGGYSQKNQFREAFKLFVDMRTDGGSDPDYVTFATLLSGCSEPDTANE 91 (749)
Q Consensus 15 ~~~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~g~~p~~~~~~~ll~~~~~~~~~~~ 91 (749)
.+.+.|++++|...|+...+ .+...+..+...+.+.|++++|+..++.+... .+.+...+..+...+...|++++
T Consensus 304 ~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~ 381 (899)
T TIGR02917 304 SEYQLGNLEQAYQYLNQILKYAPNSHQARRLLASIQLRLGRVDEAIATLSPALGL--DPDDPAALSLLGEAYLALGDFEK 381 (899)
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHCCCHHH
Confidence 44455555555555554422 12334455555555666666666666555543 23344455555555556666666
Q ss_pred HHHHHHHHHHhCCCCchhHHHHHHHHhHcCCChhHHHHHHccCCCC---CcchHHHHHHHHHhCCChhHHHHHHHHHHHC
Q 004487 92 LIQVHADIIKFGYNSILIICNSLVDSYCKIRCLDLARRVFKEMPQK---DSVSFNALITGFAKEGLNEEAIKLFVEMQHL 168 (749)
Q Consensus 92 a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 168 (749)
|.+.++.+.+... .+...+..+...+...|++++|.+.|+...+. +...+..++..+.+.|++++|+++++++...
T Consensus 382 A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 460 (899)
T TIGR02917 382 AAEYLAKATELDP-ENAAARTQLGISKLSQGDPSEAIADLETAAQLDPELGRADLLLILSYLRSGQFDKALAAAKKLEKK 460 (899)
T ss_pred HHHHHHHHHhcCC-CCHHHHHHHHHHHHhCCChHHHHHHHHHHHhhCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence 6666666555432 23445555555556666666666666554431 2234445556666666666666666666543
Q ss_pred CCCCChhhHHHHHHHHhCCCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHcCCChHHHHHHHccCCC---CCcchHHH
Q 004487 169 GFKPSDFTFAAALSAGVGLADIALGRQVHAFVVKTNFVENVFVANALLDLYSKHDCVVEARKLFGEMPE---VDGVSYNV 245 (749)
Q Consensus 169 g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~ 245 (749)
.+++..++..+...+...|+.+.|.+.+..+++.. +.+...+..+...+...|++++|.+.|+.+.. .+..++..
T Consensus 461 -~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 538 (899)
T TIGR02917 461 -QPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIE-PDFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDPKNLRAILA 538 (899)
T ss_pred -CCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHH
Confidence 23445566666666666777777777776666543 23444556666666777777777777766543 24456666
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHCCCCCCcchHHHHHHHHHccCChHHHHHHHHHHHHhcCCcchhHHHHHHHHHHhcCC
Q 004487 246 MITCYAWNEQYKESLKLFRELQFTRFDRSQFPFSTLLSVVANKLDLQIGRQIHTQTIVTTAISEVKVANSLVDMYAKCGR 325 (749)
Q Consensus 246 li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~ 325 (749)
+...+.+.|+.++|...+.++...+ ..+...+..+...+...|+.+.+..++..+.+.. +.+...+..+...|.+.|+
T Consensus 539 l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~ 616 (899)
T TIGR02917 539 LAGLYLRTGNEEEAVAWLEKAAELN-PQEIEPALALAQYYLGKGQLKKALAILNEAADAA-PDSPEAWLMLGRAQLAAGD 616 (899)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC-ccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCC
Confidence 6667777777777777777765543 2233445556666667777777777777665543 4455667777777777777
Q ss_pred HHHHHHHHHhcCC---CCcccHHHHHHHHHhCCChhHHHHHHHHHHHCCCCcCHHhHHHHHHHhcccCcHHHHHHHHHHH
Q 004487 326 FEEAKEIFANLSH---ISTVPWTAMISAYVQKGNLEEALNLFIEMCRANISADQATFASILRASAELASLSLGKQLHSFV 402 (749)
Q Consensus 326 ~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~ 402 (749)
+++|...|+.+.+ .+...|..+...|.+.|++++|...|+++.... +.+..++..+...+...|+++.|..++..+
T Consensus 617 ~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 695 (899)
T TIGR02917 617 LNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRALELK-PDNTEAQIGLAQLLLAAKRTESAKKIAKSL 695 (899)
T ss_pred HHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 7777777766543 233446666777777777777777777766532 224556666666777777777777777766
Q ss_pred HHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCC--CCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH
Q 004487 403 IRSGFMSNVFSGSALLDMYAKSGSLKDAIQTFKEMP--ERNIVSWNALISACAQNGDAQATLKSFEDMVQSGYQPDSVSL 480 (749)
Q Consensus 403 ~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~ 480 (749)
.+.. +.+...+..+...|.+.|++++|.+.|+.+. .|+..++..+...+.+.|++++|.+.++++.+. .+.+...+
T Consensus 696 ~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~-~~~~~~~~ 773 (899)
T TIGR02917 696 QKQH-PKAALGFELEGDLYLRQKDYPAAIQAYRKALKRAPSSQNAIKLHRALLASGNTAEAVKTLEAWLKT-HPNDAVLR 773 (899)
T ss_pred HhhC-cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHCCCHHHHHHHHHHHHHh-CCCCHHHH
Confidence 6654 3455566666777777777777777777665 344456666677777777777777777777664 23345566
Q ss_pred HHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHhHHHHHHHHHhc
Q 004487 481 LSVLSACSHCGLIEEGLQYFNSMTQKYKLRPKKEHYASMVDILCRSGCFDEAEKLMAQM-PFEP-DEIMWSSVINSCRIH 558 (749)
Q Consensus 481 ~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~ 558 (749)
..+...|...|+.++|.++|+.+.+. -+++...+..+...+...|+ .+|++.++++ ...| +..++..+...+...
T Consensus 774 ~~la~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 850 (899)
T TIGR02917 774 TALAELYLAQKDYDKAIKHYRTVVKK--APDNAVVLNNLAWLYLELKD-PRALEYAEKALKLAPNIPAILDTLGWLLVEK 850 (899)
T ss_pred HHHHHHHHHCcCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCCCCcHHHHHHHHHHHHc
Confidence 66666777777777777777777643 23455667777777777777 6677777766 3334 355666667777777
Q ss_pred CCHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHcCCchhHHHHHHHHH
Q 004487 559 KNLEFAKKAADQLFKMEKLRDAAPYVAMSNIYAVAGQWESVSQVKKAMR 607 (749)
Q Consensus 559 g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 607 (749)
|++++|...++++++.+| .++.++..++.+|...|++++|.+++++|.
T Consensus 851 g~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 898 (899)
T TIGR02917 851 GEADRALPLLRKAVNIAP-EAAAIRYHLALALLATGRKAEARKELDKLL 898 (899)
T ss_pred CCHHHHHHHHHHHHhhCC-CChHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 777777777777777777 677777777777777777777777777764
No 8
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=4.8e-31 Score=312.94 Aligned_cols=516 Identities=11% Similarity=0.064 Sum_probs=295.8
Q ss_pred cCCCCChHHHHHHHHHHHHhCCCCchhHHHHHHHHhHcCCChhHHHHHHccCCC---CCcchHHHHHHHHHhCCChhHHH
Q 004487 83 CSEPDTANELIQVHADIIKFGYNSILIICNSLVDSYCKIRCLDLARRVFKEMPQ---KDSVSFNALITGFAKEGLNEEAI 159 (749)
Q Consensus 83 ~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~ 159 (749)
+...|+++.|...+..+++... .+...+..+...+.+.|++++|...++.+.. .+...|+.+...+.+.|++++|.
T Consensus 305 ~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 383 (899)
T TIGR02917 305 EYQLGNLEQAYQYLNQILKYAP-NSHQARRLLASIQLRLGRVDEAIATLSPALGLDPDDPAALSLLGEAYLALGDFEKAA 383 (899)
T ss_pred HHHcCCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCCCHHHHH
Confidence 3445566666666666655432 2345555666666677777777777666543 24455666777777777777777
Q ss_pred HHHHHHHHCCCCCChhhHHHHHHHHhCCCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHcCCChHHHHHHHccCCC--
Q 004487 160 KLFVEMQHLGFKPSDFTFAAALSAGVGLADIALGRQVHAFVVKTNFVENVFVANALLDLYSKHDCVVEARKLFGEMPE-- 237 (749)
Q Consensus 160 ~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~-- 237 (749)
++|+++.+.. +.+...+..+...+...|+.+.|.+.+..+.+.... .......++..|.+.|+.++|.++++.+..
T Consensus 384 ~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 461 (899)
T TIGR02917 384 EYLAKATELD-PENAAARTQLGISKLSQGDPSEAIADLETAAQLDPE-LGRADLLLILSYLRSGQFDKALAAAKKLEKKQ 461 (899)
T ss_pred HHHHHHHhcC-CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhhCCc-chhhHHHHHHHHHhcCCHHHHHHHHHHHHHhC
Confidence 7777766542 123344445555555666666666666655544321 122333344455555555555555544432
Q ss_pred -CCcchHHHHHHHHHhcCChhHHHHHHHHHHHCCC---------------------------------CCCcchHHHHHH
Q 004487 238 -VDGVSYNVMITCYAWNEQYKESLKLFRELQFTRF---------------------------------DRSQFPFSTLLS 283 (749)
Q Consensus 238 -~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~---------------------------------~p~~~t~~~ll~ 283 (749)
.+..+|+.+...|...|++++|...|+++..... +.+..++..+..
T Consensus 462 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~ 541 (899)
T TIGR02917 462 PDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEPDFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDPKNLRAILALAG 541 (899)
T ss_pred CCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHH
Confidence 2333455555555555555555555555443211 112233333444
Q ss_pred HHHccCChHHHHHHHHHHHHhcCCcchhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CCcccHHHHHHHHHhCCChhHH
Q 004487 284 VVANKLDLQIGRQIHTQTIVTTAISEVKVANSLVDMYAKCGRFEEAKEIFANLSH---ISTVPWTAMISAYVQKGNLEEA 360 (749)
Q Consensus 284 ~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A 360 (749)
.+...|+.+.+...+..+.+.. +.+...+..+...|.+.|++++|..+++.+.. .+...|..+...|.+.|++++|
T Consensus 542 ~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 620 (899)
T TIGR02917 542 LYLRTGNEEEAVAWLEKAAELN-PQEIEPALALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKA 620 (899)
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-ccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHH
Confidence 4444444444444444444332 22333444455555555555555555554432 2233355555555555555555
Q ss_pred HHHHHHHHHCCCCcCHHhHHHHHHHhcccCcHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCC-
Q 004487 361 LNLFIEMCRANISADQATFASILRASAELASLSLGKQLHSFVIRSGFMSNVFSGSALLDMYAKSGSLKDAIQTFKEMPE- 439 (749)
Q Consensus 361 ~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~- 439 (749)
+..|+++.+.. +.+...+..+...+...|+.+.|..++..+.+.. +.+...+..++..+.+.|++++|.++++.+.+
T Consensus 621 ~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 698 (899)
T TIGR02917 621 VSSFKKLLALQ-PDSALALLLLADAYAVMKNYAKAITSLKRALELK-PDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQ 698 (899)
T ss_pred HHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 55555554432 1233444455555555555555555555554432 22344555555566666666666666655542
Q ss_pred --CCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHH
Q 004487 440 --RNIVSWNALISACAQNGDAQATLKSFEDMVQSGYQPDSVSLLSVLSACSHCGLIEEGLQYFNSMTQKYKLRPKKEHYA 517 (749)
Q Consensus 440 --~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~ 517 (749)
.+...|..+...+...|++++|++.|+++... .|+..++..+..++.+.|++++|.+.++.+.+. .+.+...+.
T Consensus 699 ~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~--~~~~~~~~~ 774 (899)
T TIGR02917 699 HPKAALGFELEGDLYLRQKDYPAAIQAYRKALKR--APSSQNAIKLHRALLASGNTAEAVKTLEAWLKT--HPNDAVLRT 774 (899)
T ss_pred CcCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhh--CCCchHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHH
Confidence 23445555666666667777777777776663 344456666666777777777777777776643 234566677
Q ss_pred HHHHHHHHcCCHHHHHHHHHhC-CCC-CCHHhHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHcCC
Q 004487 518 SMVDILCRSGCFDEAEKLMAQM-PFE-PDEIMWSSVINSCRIHKNLEFAKKAADQLFKMEKLRDAAPYVAMSNIYAVAGQ 595 (749)
Q Consensus 518 ~li~~~~~~g~~~~A~~~~~~~-~~~-p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 595 (749)
.+...|.+.|++++|.+.|+++ ... ++..+++.+...+...|+ ++|+..++++++..| .++..+..++.+|...|+
T Consensus 775 ~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~ 852 (899)
T TIGR02917 775 ALAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLELKD-PRALEYAEKALKLAP-NIPAILDTLGWLLVEKGE 852 (899)
T ss_pred HHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCC-CCcHHHHHHHHHHHHcCC
Confidence 7777777777777777777776 222 356677777777777777 668888888887777 777777788888888888
Q ss_pred chhHHHHHHHHHhCC
Q 004487 596 WESVSQVKKAMRERG 610 (749)
Q Consensus 596 ~~~a~~~~~~m~~~g 610 (749)
+++|.++++++.+.+
T Consensus 853 ~~~A~~~~~~a~~~~ 867 (899)
T TIGR02917 853 ADRALPLLRKAVNIA 867 (899)
T ss_pred HHHHHHHHHHHHhhC
Confidence 888888888877654
No 9
>PF14432 DYW_deaminase: DYW family of nucleic acid deaminases
Probab=100.00 E-value=9.4e-35 Score=239.80 Aligned_cols=106 Identities=66% Similarity=1.029 Sum_probs=98.9
Q ss_pred ceeEEEeCCEEEEEEeCCCCCcChHHHHHHHHHHHHHHHHcCCcCCCCcccccCchhhh--------hHhHhhhHHHHHH
Q 004487 616 AYSWVELKSKVHVFTANDELHPQTNEIRRKIENLMQEMKKEGYKPDTSCALHDEDEEIK--------VESLKYHSERLAI 687 (749)
Q Consensus 616 ~~s~~~~~~~~~~f~~~~~~~~~~~~~~~~l~~l~~~m~~~g~~pd~~~~~~~~~~~~~--------~~~~~~~~~~la~ 687 (749)
||||+++ |.|++||.+||+. ++..+|...||.|++..++|+++++++ +..+.+||||||+
T Consensus 2 ~~~w~~~----h~F~sgd~shp~~--------~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~d~~~~~~~~~~HSEKlAi 69 (116)
T PF14432_consen 2 GCSWIEV----HSFVSGDRSHPQS--------ELINKMKEEGYVPDTKEVGHDVDEEEKHDYDEEEKEESLCYHSEKLAI 69 (116)
T ss_pred CCCccce----EEEEeCCCcCccH--------HHHHHHHHcCCcchhhhhCCCchhhhhhhcccccchhhhhccHHHHHH
Confidence 7899987 9999999999987 567788889999999999998888766 5688999999999
Q ss_pred HHhhccCCCCCcEEEEecc-ccCcchhHHHHHhhhccCceEEEccCCcccccc
Q 004487 688 AFALINTPEGSPILVMKNL-RACTDCHAAIKLISKITGREITVRDSSRFHHFK 739 (749)
Q Consensus 688 ~~~~~~~~~~~~~~~~~nl-~~c~~~h~~~~~~s~~~~~~~~~~d~~~~h~~~ 739 (749)
||||+++ +|+||+ |||+|||+|+|+||++++|+|+|||++|||||+
T Consensus 70 afgli~~------~vvkn~~RvC~DCH~~~K~iS~~~~ReIiVRD~~rfHhFk 116 (116)
T PF14432_consen 70 AFGLINT------RVVKNLKRVCGDCHSFIKFISKITGREIIVRDSNRFHHFK 116 (116)
T ss_pred Hhcccce------eEEecCCccchHHHHHHHHHHHHHCeEEEEeCCCeeeeCC
Confidence 9999998 899999 999999999999999999999999999999997
No 10
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.95 E-value=5.6e-23 Score=244.00 Aligned_cols=575 Identities=12% Similarity=0.040 Sum_probs=292.8
Q ss_pred HHHHHcCCChHHHHHHHhcCC--CC-CcchHHHHHHHHHcCCChhHHHHHHHHhHhcCCCCCCcchH-------------
Q 004487 13 ISGYVKSGNLATARELFNSMV--DR-TAVSWTILIGGYSQKNQFREAFKLFVDMRTDGGSDPDYVTF------------- 76 (749)
Q Consensus 13 l~~~~~~g~~~~A~~~f~~~~--~~-~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~g~~p~~~~~------------- 76 (749)
++.+...++.+.|.+.++++. .| |+..+..++..+.+.|+.++|.+.++++.+. .|+...+
T Consensus 35 ~~~~~~~~~~d~a~~~l~kl~~~~p~~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~---~P~~~~~~~~~~~~~~~~~~ 111 (1157)
T PRK11447 35 VRLGEATHREDLVRQSLYRLELIDPNNPDVIAARFRLLLRQGDSDGAQKLLDRLSQL---APDSNAYRSSRTTMLLSTPE 111 (1157)
T ss_pred HHHHHhhCChHHHHHHHHHHHccCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhh---CCCChHHHHHHHHHHhcCCc
Confidence 344455555555555555542 22 3445555555555666666666666555543 2322221
Q ss_pred ----HHHHHhcCCCCChHHHHHHHHHHHHhCCCCchhH-HHHHHHHhHcCCChhHHHHHHccCCC--C-CcchHHHHHHH
Q 004487 77 ----ATLLSGCSEPDTANELIQVHADIIKFGYNSILII-CNSLVDSYCKIRCLDLARRVFKEMPQ--K-DSVSFNALITG 148 (749)
Q Consensus 77 ----~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~-~~~li~~~~~~g~~~~A~~~~~~m~~--~-~~~~~~~li~~ 148 (749)
..+.+.+...|++++|.+.++.+++...+ +... ...+.......|+.++|.+.|+++.+ | +...+..+...
T Consensus 112 ~~~~l~~A~ll~~~g~~~eA~~~~~~~l~~~p~-~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~P~~~~~~~~LA~l 190 (1157)
T PRK11447 112 GRQALQQARLLATTGRTEEALASYDKLFNGAPP-ELDLAVEYWRLVAKLPAQRPEAINQLQRLNADYPGNTGLRNTLALL 190 (1157)
T ss_pred hhhHHHHHHHHHhCCCHHHHHHHHHHHccCCCC-ChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 11122344555566666665555544321 2111 11111111223555556655555543 2 23345555555
Q ss_pred HHhCCChhHHHHHHHHHHHCC------------------------------------------------------CCCCh
Q 004487 149 FAKEGLNEEAIKLFVEMQHLG------------------------------------------------------FKPSD 174 (749)
Q Consensus 149 ~~~~g~~~~A~~l~~~m~~~g------------------------------------------------------~~p~~ 174 (749)
+...|+.++|++.|+++.... ..|+.
T Consensus 191 l~~~g~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~ 270 (1157)
T PRK11447 191 LFSSGRRDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPAF 270 (1157)
T ss_pred HHccCCHHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcch
Confidence 555566666666555554321 11111
Q ss_pred hhHHHHHHHHhCCCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHcCCChHHHHHHHccCCC--CCc---chHHHH---
Q 004487 175 FTFAAALSAGVGLADIALGRQVHAFVVKTNFVENVFVANALLDLYSKHDCVVEARKLFGEMPE--VDG---VSYNVM--- 246 (749)
Q Consensus 175 ~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~--~~~---~~~~~l--- 246 (749)
.. ...-.++...|+++.|...+...++.. +.+...+..|...|.+.|+.++|...|++..+ |+. ..|..+
T Consensus 271 ~~-~~~G~~~~~~g~~~~A~~~l~~aL~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~ 348 (1157)
T PRK11447 271 RA-RAQGLAAVDSGQGGKAIPELQQAVRAN-PKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKV 348 (1157)
T ss_pred HH-HHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHh
Confidence 00 011122334455555555555555432 22444555555555556666666655555433 111 112111
Q ss_pred ---------HHHHHhcCChhHHHHHHHHHHHCCCCCCcchHHHHHHHHHccCChHHHHHHHHHHHHhcCCcchhHHHHHH
Q 004487 247 ---------ITCYAWNEQYKESLKLFRELQFTRFDRSQFPFSTLLSVVANKLDLQIGRQIHTQTIVTTAISEVKVANSLV 317 (749)
Q Consensus 247 ---------i~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li 317 (749)
...+.+.|++++|+..|++...... .+...+..+-..+...|+.+.|.+.++.+++.. +.+...+..+.
T Consensus 349 ~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~P-~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~-p~~~~a~~~L~ 426 (1157)
T PRK11447 349 NRYWLLIQQGDAALKANNLAQAERLYQQARQVDN-TDSYAVLGLGDVAMARKDYAAAERYYQQALRMD-PGNTNAVRGLA 426 (1157)
T ss_pred hhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHH
Confidence 1234455556666666655554321 122233344445555556666666655555543 12233344444
Q ss_pred HHHHhcCCHHHHHHHHHhcCCCC------------cccHHHHHHHHHhCCChhHHHHHHHHHHHCCCCc-CHHhHHHHHH
Q 004487 318 DMYAKCGRFEEAKEIFANLSHIS------------TVPWTAMISAYVQKGNLEEALNLFIEMCRANISA-DQATFASILR 384 (749)
Q Consensus 318 ~~~~~~g~~~~A~~~~~~~~~~~------------~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~ 384 (749)
..|. .++.++|...++.+.... ...+..+...+...|++++|++.|++..+. .| +...+..+..
T Consensus 427 ~l~~-~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~--~P~~~~~~~~LA~ 503 (1157)
T PRK11447 427 NLYR-QQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLAL--DPGSVWLTYRLAQ 503 (1157)
T ss_pred HHHH-hcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHH
Confidence 4443 234555555555443211 111333445555666667777766666653 34 3334445555
Q ss_pred HhcccCcHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCCCC----cc---------hHHHHHHH
Q 004487 385 ASAELASLSLGKQLHSFVIRSGFMSNVFSGSALLDMYAKSGSLKDAIQTFKEMPERN----IV---------SWNALISA 451 (749)
Q Consensus 385 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~----~~---------~~~~li~~ 451 (749)
.+.+.|+.++|...++.+++.. +.+......+...+.+.|+.++|...++.+.... .. .+..+...
T Consensus 504 ~~~~~G~~~~A~~~l~~al~~~-P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~ 582 (1157)
T PRK11447 504 DLRQAGQRSQADALMRRLAQQK-PNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANR 582 (1157)
T ss_pred HHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHH
Confidence 6666667777776666665533 2233333344445556666677776666665311 10 11223445
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCC-ChHHHHHHHHHHHHcCCHH
Q 004487 452 CAQNGDAQATLKSFEDMVQSGYQPDSVSLLSVLSACSHCGLIEEGLQYFNSMTQKYKLRP-KKEHYASMVDILCRSGCFD 530 (749)
Q Consensus 452 ~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~ 530 (749)
+...|+.++|+++++ . .+++...+..+...+...|+.++|+..|+...+. .| +...+..++.+|...|+++
T Consensus 583 l~~~G~~~eA~~~l~---~--~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~---~P~~~~a~~~la~~~~~~g~~~ 654 (1157)
T PRK11447 583 LRDSGKEAEAEALLR---Q--QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTR---EPGNADARLGLIEVDIAQGDLA 654 (1157)
T ss_pred HHHCCCHHHHHHHHH---h--CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHCCCHH
Confidence 666677777766655 1 2334445555666667777777777777766642 33 3556666677777777777
Q ss_pred HHHHHHHhC-CCCCC-HHhHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCc------hhHHHHHHHHHHcCCchhHHHH
Q 004487 531 EAEKLMAQM-PFEPD-EIMWSSVINSCRIHKNLEFAKKAADQLFKMEKLRDA------APYVAMSNIYAVAGQWESVSQV 602 (749)
Q Consensus 531 ~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~------~~~~~l~~~~~~~g~~~~a~~~ 602 (749)
+|++.++.. ...|+ ..++..+..++...|+.++|...++++++..| .++ ..+..++.++...|++++|...
T Consensus 655 eA~~~l~~ll~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~-~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~ 733 (1157)
T PRK11447 655 AARAQLAKLPATANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAK-SQPPSMESALVLRDAARFEAQTGQPQQALET 733 (1157)
T ss_pred HHHHHHHHHhccCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCc-cCCcchhhHHHHHHHHHHHHHcCCHHHHHHH
Confidence 777777665 33343 44555566666667777777777777766654 222 3445566777777777777777
Q ss_pred HHHHHh
Q 004487 603 KKAMRE 608 (749)
Q Consensus 603 ~~~m~~ 608 (749)
++....
T Consensus 734 y~~Al~ 739 (1157)
T PRK11447 734 YKDAMV 739 (1157)
T ss_pred HHHHHh
Confidence 776653
No 11
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.95 E-value=2e-22 Score=239.29 Aligned_cols=556 Identities=10% Similarity=0.020 Sum_probs=411.5
Q ss_pred CCcchhHHHHHHHHcCCChHHHHHHHhcCCC--CCcch-H----------------HHHHHHHHcCCChhHHHHHHHHhH
Q 004487 4 QNTVSTNMLISGYVKSGNLATARELFNSMVD--RTAVS-W----------------TILIGGYSQKNQFREAFKLFVDMR 64 (749)
Q Consensus 4 ~~~~~~~~ll~~~~~~g~~~~A~~~f~~~~~--~~~~~-~----------------~~li~~~~~~g~~~~a~~l~~~m~ 64 (749)
.|+.++..+...+.+.|+.++|.+.+++..+ |+... + -.+...+.+.|++++|++.|+++.
T Consensus 60 ~~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~~P~~~~~~~~~~~~~~~~~~~~~~l~~A~ll~~~g~~~eA~~~~~~~l 139 (1157)
T PRK11447 60 NNPDVIAARFRLLLRQGDSDGAQKLLDRLSQLAPDSNAYRSSRTTMLLSTPEGRQALQQARLLATTGRTEEALASYDKLF 139 (1157)
T ss_pred CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHhcCCchhhHHHHHHHHHhCCCHHHHHHHHHHHc
Confidence 3677788889999999999999999999854 33222 1 233446889999999999999988
Q ss_pred hcCCCCCCcch-HHHHHHhcCCCCChHHHHHHHHHHHHhCCCCchhHHHHHHHHhHcCCChhHHHHHHccCCCCCc----
Q 004487 65 TDGGSDPDYVT-FATLLSGCSEPDTANELIQVHADIIKFGYNSILIICNSLVDSYCKIRCLDLARRVFKEMPQKDS---- 139 (749)
Q Consensus 65 ~~~g~~p~~~~-~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~---- 139 (749)
+. .+|+... ...........++.++|...++.+++... .+...+..+...+...|+.++|...|+++.+...
T Consensus 140 ~~--~p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~P-~~~~~~~~LA~ll~~~g~~~eAl~~l~~~~~~~~~~~~ 216 (1157)
T PRK11447 140 NG--APPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADYP-GNTGLRNTLALLLFSSGRRDEGFAVLEQMAKSPAGRDA 216 (1157)
T ss_pred cC--CCCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCchHH
Confidence 63 4444321 11111222356899999999999998863 3667788899999999999999999887632100
Q ss_pred --ch-----------------HH----------------------------------HHHHHHHhCCChhHHHHHHHHHH
Q 004487 140 --VS-----------------FN----------------------------------ALITGFAKEGLNEEAIKLFVEMQ 166 (749)
Q Consensus 140 --~~-----------------~~----------------------------------~li~~~~~~g~~~~A~~l~~~m~ 166 (749)
.. +. .....+...|++++|+..|++..
T Consensus 217 aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~~~~~~G~~~~~~g~~~~A~~~l~~aL 296 (1157)
T PRK11447 217 AAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPAFRARAQGLAAVDSGQGGKAIPELQQAV 296 (1157)
T ss_pred HHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 00 00 11234567899999999999998
Q ss_pred HCCCCC-ChhhHHHHHHHHhCCCChHHHHHHHHHHHHcCCCCC-hhHH------------HHHHHHHHcCCChHHHHHHH
Q 004487 167 HLGFKP-SDFTFAAALSAGVGLADIALGRQVHAFVVKTNFVEN-VFVA------------NALLDLYSKHDCVVEARKLF 232 (749)
Q Consensus 167 ~~g~~p-~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~-~~~~------------~~Li~~y~~~g~~~~A~~~f 232 (749)
+. .| +...+..+-.++.+.|++++|...+...++...... ...+ ..+...+.+.|++++|...|
T Consensus 297 ~~--~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~ 374 (1157)
T PRK11447 297 RA--NPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLY 374 (1157)
T ss_pred Hh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 75 34 667788888999999999999999999988654322 1111 22345678999999999999
Q ss_pred ccCCC---CCcchHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCc-chHHHHHHHHHccCChHHHHHHHHHHHHhcCC-
Q 004487 233 GEMPE---VDGVSYNVMITCYAWNEQYKESLKLFRELQFTRFDRSQ-FPFSTLLSVVANKLDLQIGRQIHTQTIVTTAI- 307 (749)
Q Consensus 233 ~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~-~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~- 307 (749)
++... .+...+..+...+...|++++|++.|++..+.. |+. ..+..+...+ ..++.+.|..++..+......
T Consensus 375 ~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~--p~~~~a~~~L~~l~-~~~~~~~A~~~l~~l~~~~~~~ 451 (1157)
T PRK11447 375 QQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMD--PGNTNAVRGLANLY-RQQSPEKALAFIASLSASQRRS 451 (1157)
T ss_pred HHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHH-HhcCHHHHHHHHHhCCHHHHHH
Confidence 98865 345577788899999999999999999998753 443 3444444444 345778888877665432110
Q ss_pred -------cchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCC---cccHHHHHHHHHhCCChhHHHHHHHHHHHCCCCc-CH
Q 004487 308 -------SEVKVANSLVDMYAKCGRFEEAKEIFANLSHIS---TVPWTAMISAYVQKGNLEEALNLFIEMCRANISA-DQ 376 (749)
Q Consensus 308 -------~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~ 376 (749)
.....+..+...+...|++++|.+.|++..+.+ ...+..+...|.+.|++++|...|++..+. .| +.
T Consensus 452 ~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~--~P~~~ 529 (1157)
T PRK11447 452 IDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQ--KPNDP 529 (1157)
T ss_pred HHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCH
Confidence 012245567788889999999999999986533 334677888999999999999999998874 34 33
Q ss_pred HhHHHHHHHhcccCcHHHHHHHHHHHHHhCCCCchh---------HHHHHHHHHHhcCCHHHHHHHHhhCCCCCcchHHH
Q 004487 377 ATFASILRASAELASLSLGKQLHSFVIRSGFMSNVF---------SGSALLDMYAKSGSLKDAIQTFKEMPERNIVSWNA 447 (749)
Q Consensus 377 ~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---------~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~ 447 (749)
..+..+...+...++.++|...+..+......++.. ....+.+.+...|+.++|.++++.- ..+...+..
T Consensus 530 ~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~~-p~~~~~~~~ 608 (1157)
T PRK11447 530 EQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQQ-PPSTRIDLT 608 (1157)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHhC-CCCchHHHH
Confidence 333334445677899999999888765433222221 2234567788999999999999943 345567778
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCC-ChHHHHHHHHHHHH
Q 004487 448 LISACAQNGDAQATLKSFEDMVQSGYQPD-SVSLLSVLSACSHCGLIEEGLQYFNSMTQKYKLRP-KKEHYASMVDILCR 525 (749)
Q Consensus 448 li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~ 525 (749)
+...+.+.|++++|++.|++..+. .|+ ...+..+...+...|+.++|++.++...+ ..| +...+..+..++..
T Consensus 609 La~~~~~~g~~~~A~~~y~~al~~--~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~---~~p~~~~~~~~la~~~~~ 683 (1157)
T PRK11447 609 LADWAQQRGDYAAARAAYQRVLTR--EPGNADARLGLIEVDIAQGDLAAARAQLAKLPA---TANDSLNTQRRVALAWAA 683 (1157)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhc---cCCCChHHHHHHHHHHHh
Confidence 889999999999999999999984 554 56888999999999999999999998763 344 35566778889999
Q ss_pred cCCHHHHHHHHHhC-CCCC-------CHHhHHHHHHHHHhcCCHHHHHHHHHHHhcCC
Q 004487 526 SGCFDEAEKLMAQM-PFEP-------DEIMWSSVINSCRIHKNLEFAKKAADQLFKME 575 (749)
Q Consensus 526 ~g~~~~A~~~~~~~-~~~p-------~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 575 (749)
.|++++|.++++++ ...| +...+..+...+...|+.++|+..+++++...
T Consensus 684 ~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al~~~ 741 (1157)
T PRK11447 684 LGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDAMVAS 741 (1157)
T ss_pred CCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc
Confidence 99999999999997 2222 22456666788899999999999999998644
No 12
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.92 E-value=4.1e-19 Score=201.24 Aligned_cols=561 Identities=9% Similarity=-0.008 Sum_probs=378.5
Q ss_pred HcCCChHHHHHHHhcCCC--C-CcchHHHHHHHHHcCCChhHHHHHHHHhHhcCCCCCCcchHHHHHHhcCCCCChHHHH
Q 004487 17 VKSGNLATARELFNSMVD--R-TAVSWTILIGGYSQKNQFREAFKLFVDMRTDGGSDPDYVTFATLLSGCSEPDTANELI 93 (749)
Q Consensus 17 ~~~g~~~~A~~~f~~~~~--~-~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~g~~p~~~~~~~ll~~~~~~~~~~~a~ 93 (749)
...|++++|...|++..+ | +...+..|...|.+.|+.++|+..+++..+. .|+...|..++..+ ++...|.
T Consensus 55 ~~~Gd~~~A~~~l~~Al~~dP~n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~l---dP~n~~~~~~La~i---~~~~kA~ 128 (987)
T PRK09782 55 QKNNDEATAIREFEYIHQQVPDNIPLTLYLAEAYRHFGHDDRARLLLEDQLKR---HPGDARLERSLAAI---PVEVKSV 128 (987)
T ss_pred HhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc---CcccHHHHHHHHHh---ccChhHH
Confidence 345999999999998854 3 4567899999999999999999999998864 45555555555433 8888999
Q ss_pred HHHHHHHHhCCCCchhHHHHHHHH--------hHcCCChhHHHHHHccCCCC--CcchHHHH-HHHHHhCCChhHHHHHH
Q 004487 94 QVHADIIKFGYNSILIICNSLVDS--------YCKIRCLDLARRVFKEMPQK--DSVSFNAL-ITGFAKEGLNEEAIKLF 162 (749)
Q Consensus 94 ~~~~~~~~~g~~~~~~~~~~li~~--------~~~~g~~~~A~~~~~~m~~~--~~~~~~~l-i~~~~~~g~~~~A~~l~ 162 (749)
.+++++++.... +..++..+... |.+.+....+++ . +...+ +....... ...|.+.|++++|++++
T Consensus 129 ~~ye~l~~~~P~-n~~~~~~la~~~~~~~~l~y~q~eqAl~AL~-l-r~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai~lL 205 (987)
T PRK09782 129 TTVEELLAQQKA-CDAVPTLRCRSEVGQNALRLAQLPVARAQLN-D-ATFAASPEGKTLRTDLLQRAIYLKQWSQADTLY 205 (987)
T ss_pred HHHHHHHHhCCC-ChhHHHHHHHHhhccchhhhhhHHHHHHHHH-H-hhhCCCCCcHHHHHHHHHHHHHHhCHHHHHHHH
Confidence 999999998643 34455555554 888777777777 3 33333 34444444 89999999999999999
Q ss_pred HHHHHCCCCCChhhHHHHHHHHhC-CCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHcCCChHHHHHHHccCCC----
Q 004487 163 VEMQHLGFKPSDFTFAAALSAGVG-LADIALGRQVHAFVVKTNFVENVFVANALLDLYSKHDCVVEARKLFGEMPE---- 237 (749)
Q Consensus 163 ~~m~~~g~~p~~~t~~~ll~a~~~-~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~---- 237 (749)
.++.+.+... ..-...+-.++.. .++ +.+..++.. .+..+..+...+.+.|.+.|+.++|.+++++++.
T Consensus 206 ~~L~k~~pl~-~~~~~~L~~ay~q~l~~-~~a~al~~~----~lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~~~ 279 (987)
T PRK09782 206 NEARQQNTLS-AAERRQWFDVLLAGQLD-DRLLALQSQ----GIFTDPQSRITYATALAYRGEKARLQHYLIENKPLFTT 279 (987)
T ss_pred HHHHhcCCCC-HHHHHHHHHHHHHhhCH-HHHHHHhch----hcccCHHHHHHHHHHHHHCCCHHHHHHHHHhCcccccC
Confidence 9999986332 3334455556665 355 666666332 3446888899999999999999999999998864
Q ss_pred -CCcchHHH------------------------------HHHHHHhcCChhHHHHHHHHHHHCCCCCCcchHHHHHHHHH
Q 004487 238 -VDGVSYNV------------------------------MITCYAWNEQYKESLKLFRELQFTRFDRSQFPFSTLLSVVA 286 (749)
Q Consensus 238 -~~~~~~~~------------------------------li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~ 286 (749)
++..+|-- .+..+.+.++++.+.++.. ..|.... ..+....
T Consensus 280 ~~~~~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~--~~~r~~~ 351 (987)
T PRK09782 280 DAQEKSWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLLA------TLPANEM--LEERYAV 351 (987)
T ss_pred CCccHHHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHhc------CCCcchH--HHHHHhh
Confidence 22222221 1344555566654444311 3333332 2222222
Q ss_pred --ccCChHHHHHHHHHHHHhcCCcchhHHHHHHHHHHhcCCHHHHHHHHHhcCC--CCc---c-cHHHHHHHHHhCCC--
Q 004487 287 --NKLDLQIGRQIHTQTIVTTAISEVKVANSLVDMYAKCGRFEEAKEIFANLSH--IST---V-PWTAMISAYVQKGN-- 356 (749)
Q Consensus 287 --~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~---~-~~~~li~~~~~~g~-- 356 (749)
..+...++.+.+..+.+.. +.+....--+.-...+.|+.++|..+|+.... .+. . .-+-++..|.+.+.
T Consensus 352 ~~~~~~~~~~~~~~~~~y~~~-~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~ 430 (987)
T PRK09782 352 SVATRNKAEALRLARLLYQQE-PANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLA 430 (987)
T ss_pred ccccCchhHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCccc
Confidence 2244555555555555442 22333334444456678888888888887654 111 1 13356667776655
Q ss_pred -hhHHHHH------------HH----------HHHH-CCCCc---CHHhHHHHHHHhcccCcHHHHHHHHHHHHHhCCCC
Q 004487 357 -LEEALNL------------FI----------EMCR-ANISA---DQATFASILRASAELASLSLGKQLHSFVIRSGFMS 409 (749)
Q Consensus 357 -~~~A~~l------------~~----------~m~~-~g~~p---~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~ 409 (749)
..+|+.+ .. .... .+..| +...+..+-.++.. +..++|...+....... |
T Consensus 431 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~--P 507 (987)
T PRK09782 431 TPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQ--P 507 (987)
T ss_pred chHHHHHhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhC--C
Confidence 3444333 11 1111 11222 34444444444444 67777888666655543 4
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHhhCCC--CCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHH
Q 004487 410 NVFSGSALLDMYAKSGSLKDAIQTFKEMPE--RNIVSWNALISACAQNGDAQATLKSFEDMVQSGYQPDSV-SLLSVLSA 486 (749)
Q Consensus 410 ~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a 486 (749)
+......+...+...|++++|...|+++.. ++...+..+...+.+.|+.++|.+.+++..+. .|+.. .+..+...
T Consensus 508 d~~~~L~lA~al~~~Gr~eeAi~~~rka~~~~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l--~P~~~~l~~~La~~ 585 (987)
T PRK09782 508 DAWQHRAVAYQAYQVEDYATALAAWQKISLHDMSNEDLLAAANTAQAAGNGAARDRWLQQAEQR--GLGDNALYWWLHAQ 585 (987)
T ss_pred chHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCccHHHHHHHHHH
Confidence 433333445555688999999999987653 44556667777788889999999999988874 35443 33334445
Q ss_pred HhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC-HHhHHHHHHHHHhcCCHHHH
Q 004487 487 CSHCGLIEEGLQYFNSMTQKYKLRPKKEHYASMVDILCRSGCFDEAEKLMAQM-PFEPD-EIMWSSVINSCRIHKNLEFA 564 (749)
Q Consensus 487 ~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~~a 564 (749)
....|++++|...++...+ +.|+...+..+..++.+.|++++|.+.+++. ...|+ ...+..+..++...|+.++|
T Consensus 586 l~~~Gr~~eAl~~~~~AL~---l~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeA 662 (987)
T PRK09782 586 RYIPGQPELALNDLTRSLN---IAPSANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQS 662 (987)
T ss_pred HHhCCCHHHHHHHHHHHHH---hCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHH
Confidence 5566999999999988874 4677888888888999999999999998887 55664 66777777788889999999
Q ss_pred HHHHHHHhcCCCCCCchhHHHHHHHHHHcCCchhHHHHHHHHHhCC
Q 004487 565 KKAADQLFKMEKLRDAAPYVAMSNIYAVAGQWESVSQVKKAMRERG 610 (749)
Q Consensus 565 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 610 (749)
+..++++++..| .++..+..++.+|...|++++|...+++..+..
T Consensus 663 i~~l~~AL~l~P-~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~ 707 (987)
T PRK09782 663 REMLERAHKGLP-DDPALIRQLAYVNQRLDDMAATQHYARLVIDDI 707 (987)
T ss_pred HHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 999999999999 888999999999999999999999888886543
No 13
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.90 E-value=2.9e-18 Score=194.35 Aligned_cols=579 Identities=9% Similarity=0.003 Sum_probs=390.4
Q ss_pred cchhHHHHHHHHcCCChHHHHHHHhcCCC--CCcchHHHHHHHHHcCCChhHHHHHHHHhHhcCCCCCCcchHHHHHHhc
Q 004487 6 TVSTNMLISGYVKSGNLATARELFNSMVD--RTAVSWTILIGGYSQKNQFREAFKLFVDMRTDGGSDPDYVTFATLLSGC 83 (749)
Q Consensus 6 ~~~~~~ll~~~~~~g~~~~A~~~f~~~~~--~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~g~~p~~~~~~~ll~~~ 83 (749)
+.++..|...|.+.|+.++|+..+++..+ |+-..|..++..+ +++++|..+|+++... .+-+..++..+....
T Consensus 78 ~~~~~~LA~~yl~~g~~~~A~~~~~kAv~ldP~n~~~~~~La~i---~~~~kA~~~ye~l~~~--~P~n~~~~~~la~~~ 152 (987)
T PRK09782 78 IPLTLYLAEAYRHFGHDDRARLLLEDQLKRHPGDARLERSLAAI---PVEVKSVTTVEELLAQ--QKACDAVPTLRCRSE 152 (987)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHHHHHh---ccChhHHHHHHHHHHh--CCCChhHHHHHHHHh
Confidence 67788999999999999999999998855 3333444434333 8888999999998865 222333333333330
Q ss_pred -----CCCCChHHHHHHHHHHHHhCCCCchhHHHHH-HHHhHcCCChhHHHHHHccCCCC---CcchHHHHHHHHHhC-C
Q 004487 84 -----SEPDTANELIQVHADIIKFGYNSILIICNSL-VDSYCKIRCLDLARRVFKEMPQK---DSVSFNALITGFAKE-G 153 (749)
Q Consensus 84 -----~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l-i~~~~~~g~~~~A~~~~~~m~~~---~~~~~~~li~~~~~~-g 153 (749)
.+..+.+.+.+..+ .......|+..+.... ...|.+.|++++|.+++.++.+. +..-+..|-.+|.+. +
T Consensus 153 ~~~~~l~y~q~eqAl~AL~-lr~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai~lL~~L~k~~pl~~~~~~~L~~ay~q~l~ 231 (987)
T PRK09782 153 VGQNALRLAQLPVARAQLN-DATFAASPEGKTLRTDLLQRAIYLKQWSQADTLYNEARQQNTLSAAERRQWFDVLLAGQL 231 (987)
T ss_pred hccchhhhhhHHHHHHHHH-HhhhCCCCCcHHHHHHHHHHHHHHhCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhC
Confidence 11222345555554 3333334444444444 77777777777777777776643 222244455556552 5
Q ss_pred ChhHHHHHHHHHHHCCCCCChhhHHHHHHHHhCCCChHHHHHHHHHHHHcCCC-CC------------------------
Q 004487 154 LNEEAIKLFVEMQHLGFKPSDFTFAAALSAGVGLADIALGRQVHAFVVKTNFV-EN------------------------ 208 (749)
Q Consensus 154 ~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~-~~------------------------ 208 (749)
+ +++..+++. .++-|......+...+.+.|+.+.|.+++..+...-.. |+
T Consensus 232 ~-~~a~al~~~----~lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~~~~~~~~~~~~~l~r~~~~~~~~~~~~~~ 306 (987)
T PRK09782 232 D-DRLLALQSQ----GIFTDPQSRITYATALAYRGEKARLQHYLIENKPLFTTDAQEKSWLYLLSKYSANPVQALANYTV 306 (987)
T ss_pred H-HHHHHHhch----hcccCHHHHHHHHHHHHHCCCHHHHHHHHHhCcccccCCCccHHHHHHHHhccCchhhhccchhh
Confidence 5 556555442 22345566666667777777777776666544321100 00
Q ss_pred ------hhHHHHHHHHHHcCCChHHHHHHHccCCCCCcchHHHHHH--HHHhcCChhHHHHHHHHHHHCCCCCCcchHHH
Q 004487 209 ------VFVANALLDLYSKHDCVVEARKLFGEMPEVDGVSYNVMIT--CYAWNEQYKESLKLFRELQFTRFDRSQFPFST 280 (749)
Q Consensus 209 ------~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~--~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ 280 (749)
....-.+++.+.+.+.++.+.++.+.-+. +. . ..+. +....+...++...+..|.+... -+....--
T Consensus 307 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~--~~~r~~~~~~~~~~~~~~~~~~~~y~~~~-~~~~~l~q 381 (987)
T PRK09782 307 QFADNRQYVVGATLPVLLKEGQYDAAQKLLATLPA-NE-M--LEERYAVSVATRNKAEALRLARLLYQQEP-ANLTRLDQ 381 (987)
T ss_pred hhHHHHHHHHHHHHHHHHhccHHHHHHHHhcCCCc-ch-H--HHHHHhhccccCchhHHHHHHHHHHhcCC-CCHHHHHH
Confidence 11223447778888888888877553332 22 1 2222 22344667777777777755411 12222222
Q ss_pred HHHHHHccCChHHHHHHHHHHHHh-c-CCcchhHHHHHHHHHHhcCCHH---HHHHH-----------------------
Q 004487 281 LLSVVANKLDLQIGRQIHTQTIVT-T-AISEVKVANSLVDMYAKCGRFE---EAKEI----------------------- 332 (749)
Q Consensus 281 ll~~~~~~~~~~~a~~~~~~~~~~-g-~~~~~~~~~~li~~~~~~g~~~---~A~~~----------------------- 332 (749)
+--.....|+.+.|.+++...... + -..+..+..-|+..|.+.+.+. ++..+
T Consensus 382 ~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 461 (987)
T PRK09782 382 LTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILSKPLPLAEQRQWQSQLPGIADNC 461 (987)
T ss_pred HHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhccccccchhHHHHhhhhhhhhhH
Confidence 222345678889999998888773 2 2234556667888888876632 22222
Q ss_pred --HHhcCC---C--CcccHHHHHHHHHhCCChhHHHHHHHHHHHCCCCcCHHhHHHHHHHhcccCcHHHHHHHHHHHHHh
Q 004487 333 --FANLSH---I--STVPWTAMISAYVQKGNLEEALNLFIEMCRANISADQATFASILRASAELASLSLGKQLHSFVIRS 405 (749)
Q Consensus 333 --~~~~~~---~--~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~ 405 (749)
+..... . +...|..+..++.. ++.++|+..+.+.... .|+......+..++...|+++.|...+..+...
T Consensus 462 ~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~--~Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~ 538 (987)
T PRK09782 462 PAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQR--QPDAWQHRAVAYQAYQVEDYATALAAWQKISLH 538 (987)
T ss_pred HHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHh--CCchHHHHHHHHHHHHCCCHHHHHHHHHHHhcc
Confidence 111111 1 33446777777766 8899999988887764 477655445555667899999999999887554
Q ss_pred CCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCcchHHHHHH---HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 004487 406 GFMSNVFSGSALLDMYAKSGSLKDAIQTFKEMPERNIVSWNALIS---ACAQNGDAQATLKSFEDMVQSGYQPDSVSLLS 482 (749)
Q Consensus 406 ~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~---~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ 482 (749)
+|+......+...+.+.|+.++|.+.|+...+.++..++.... .....|++++|+..+++..+ ..|+...+..
T Consensus 539 --~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~--l~P~~~a~~~ 614 (987)
T PRK09782 539 --DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRGLGDNALYWWLHAQRYIPGQPELALNDLTRSLN--IAPSANAYVA 614 (987)
T ss_pred --CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHH--hCCCHHHHHH
Confidence 3344445677788899999999999999887544433433333 33345999999999999998 6788888999
Q ss_pred HHHHHhccCCHHHHHHHHHHhHHhcCCCC-ChHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHhHHHHHHHHHhcC
Q 004487 483 VLSACSHCGLIEEGLQYFNSMTQKYKLRP-KKEHYASMVDILCRSGCFDEAEKLMAQM-PFEP-DEIMWSSVINSCRIHK 559 (749)
Q Consensus 483 ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g 559 (749)
+..++.+.|+.++|...++.... +.| +...+..+...+...|++++|++.+++. ...| +...+..+..++...|
T Consensus 615 LA~~l~~lG~~deA~~~l~~AL~---l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lG 691 (987)
T PRK09782 615 RATIYRQRHNVPAAVSDLRAALE---LEPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQRLD 691 (987)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCC
Confidence 99999999999999999999884 456 4667888888999999999999999988 5556 4788999999999999
Q ss_pred CHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHcCCchhHHHHHHHHHhCCC
Q 004487 560 NLEFAKKAADQLFKMEKLRDAAPYVAMSNIYAVAGQWESVSQVKKAMRERGV 611 (749)
Q Consensus 560 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~ 611 (749)
++++|+..++++++++| .+.......+++..+..+++.|.+-++..-.-.+
T Consensus 692 d~~eA~~~l~~Al~l~P-~~a~i~~~~g~~~~~~~~~~~a~~~~~r~~~~~~ 742 (987)
T PRK09782 692 DMAATQHYARLVIDDID-NQALITPLTPEQNQQRFNFRRLHEEVGRRWTFSF 742 (987)
T ss_pred CHHHHHHHHHHHHhcCC-CCchhhhhhhHHHHHHHHHHHHHHHHHHHhhcCc
Confidence 99999999999999999 9999999999999999999999998877655444
No 14
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.87 E-value=1.9e-18 Score=173.12 Aligned_cols=448 Identities=10% Similarity=0.102 Sum_probs=349.2
Q ss_pred HHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHhCCCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHc
Q 004487 142 FNALITGFAKEGLNEEAIKLFVEMQHLGFKPSDFTFAAALSAGVGLADIALGRQVHAFVVKTNFVENVFVANALLDLYSK 221 (749)
Q Consensus 142 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~ 221 (749)
-..|..-..+.|++++|.+.-...-+.. ..+..+...+-..+.+..+++...+--...++.. +.-..+|+.+.+.+-.
T Consensus 51 ~l~lah~~yq~gd~~~a~~h~nmv~~~d-~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~-~q~ae~ysn~aN~~ke 128 (966)
T KOG4626|consen 51 RLELAHRLYQGGDYKQAEKHCNMVGQED-PTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRKN-PQGAEAYSNLANILKE 128 (966)
T ss_pred HHHHHHHHHhccCHHHHHHHHhHhhccC-CCcccceeeehhhhhcccchhhhhhhhhhhhhcc-chHHHHHHHHHHHHHH
Confidence 3445555667888888887665443332 1122222222223334444444333322233222 2245678888999999
Q ss_pred CCChHHHHHHHccCCC---CCcchHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCcchHHHHHH-HHHccCChHHHHHH
Q 004487 222 HDCVVEARKLFGEMPE---VDGVSYNVMITCYAWNEQYKESLKLFRELQFTRFDRSQFPFSTLLS-VVANKLDLQIGRQI 297 (749)
Q Consensus 222 ~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~-~~~~~~~~~~a~~~ 297 (749)
.|++++|..+++.+.+ ..+..|..+..++...|+.+.|.+.|.+..+ +.|+.+...+-+. .....|.+++|...
T Consensus 129 rg~~~~al~~y~~aiel~p~fida~inla~al~~~~~~~~a~~~~~~alq--lnP~l~ca~s~lgnLlka~Grl~ea~~c 206 (966)
T KOG4626|consen 129 RGQLQDALALYRAAIELKPKFIDAYINLAAALVTQGDLELAVQCFFEALQ--LNPDLYCARSDLGNLLKAEGRLEEAKAC 206 (966)
T ss_pred hchHHHHHHHHHHHHhcCchhhHHHhhHHHHHHhcCCCcccHHHHHHHHh--cCcchhhhhcchhHHHHhhcccchhHHH
Confidence 9999999999988876 3567899999999999999999999988766 3565544333222 33456888888888
Q ss_pred HHHHHHhcCCcchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCCc---ccHHHHHHHHHhCCChhHHHHHHHHHHHCCCCc
Q 004487 298 HTQTIVTTAISEVKVANSLVDMYAKCGRFEEAKEIFANLSHIST---VPWTAMISAYVQKGNLEEALNLFIEMCRANISA 374 (749)
Q Consensus 298 ~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p 374 (749)
+..+++... .=..+|+.|...+...|+...|..-|++....|+ ..|-.|-..|...+.+++|+..|.+... ..|
T Consensus 207 YlkAi~~qp-~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~--lrp 283 (966)
T KOG4626|consen 207 YLKAIETQP-CFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEARIFDRAVSCYLRALN--LRP 283 (966)
T ss_pred HHHHHhhCC-ceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHhcchHHHHHHHHHHh--cCC
Confidence 888877642 2345788899999999999999999999876544 3377888899999999999999988765 466
Q ss_pred C-HHhHHHHHHHhcccCcHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCC---CCcchHHHHHH
Q 004487 375 D-QATFASILRASAELASLSLGKQLHSFVIRSGFMSNVFSGSALLDMYAKSGSLKDAIQTFKEMPE---RNIVSWNALIS 450 (749)
Q Consensus 375 ~-~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~ 450 (749)
+ .+.+..+...|...|.++.|..-+++.++... .-+..|+.|..++-..|++.+|.+.+.+... ....+.+.|..
T Consensus 284 n~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P-~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~hadam~NLgn 362 (966)
T KOG4626|consen 284 NHAVAHGNLACIYYEQGLLDLAIDTYKRALELQP-NFPDAYNNLANALKDKGSVTEAVDCYNKALRLCPNHADAMNNLGN 362 (966)
T ss_pred cchhhccceEEEEeccccHHHHHHHHHHHHhcCC-CchHHHhHHHHHHHhccchHHHHHHHHHHHHhCCccHHHHHHHHH
Confidence 4 46777777788999999999999998887642 2356799999999999999999999998773 34567888999
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHHHcCC
Q 004487 451 ACAQNGDAQATLKSFEDMVQSGYQPDSV-SLLSVLSACSHCGLIEEGLQYFNSMTQKYKLRPK-KEHYASMVDILCRSGC 528 (749)
Q Consensus 451 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~ 528 (749)
.|...|.+++|..+|....+ +.|.-. .++.|...|-+.|++++|+..+++.. .|.|+ ...|+.|...|-..|+
T Consensus 363 i~~E~~~~e~A~~ly~~al~--v~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykeal---rI~P~fAda~~NmGnt~ke~g~ 437 (966)
T KOG4626|consen 363 IYREQGKIEEATRLYLKALE--VFPEFAAAHNNLASIYKQQGNLDDAIMCYKEAL---RIKPTFADALSNMGNTYKEMGD 437 (966)
T ss_pred HHHHhccchHHHHHHHHHHh--hChhhhhhhhhHHHHHHhcccHHHHHHHHHHHH---hcCchHHHHHHhcchHHHHhhh
Confidence 99999999999999999998 778754 89999999999999999999999887 68897 4789999999999999
Q ss_pred HHHHHHHHHhC-CCCCC-HHhHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHcCCchhHHHHH
Q 004487 529 FDEAEKLMAQM-PFEPD-EIMWSSVINSCRIHKNLEFAKKAADQLFKMEKLRDAAPYVAMSNIYAVAGQWESVSQVK 603 (749)
Q Consensus 529 ~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 603 (749)
.+.|.+.+.+. .+.|. ....+.|...+...|++.+|++.|+.++++.| +.+.+|-.++.+..-..+|.+-.+.+
T Consensus 438 v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkP-DfpdA~cNllh~lq~vcdw~D~d~~~ 513 (966)
T KOG4626|consen 438 VSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKP-DFPDAYCNLLHCLQIVCDWTDYDKRM 513 (966)
T ss_pred HHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCC-CCchhhhHHHHHHHHHhcccchHHHH
Confidence 99999999888 77886 77899999999999999999999999999999 99999999999888888887743333
No 15
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.82 E-value=1.3e-17 Score=176.89 Aligned_cols=290 Identities=9% Similarity=0.123 Sum_probs=218.9
Q ss_pred HHHhcCCHHHHHHHHHhcCCCC---cccHHHHHHHHHhCCChhHHHHHHHHHHHCCCCcC---HHhHHHHHHHhcccCcH
Q 004487 319 MYAKCGRFEEAKEIFANLSHIS---TVPWTAMISAYVQKGNLEEALNLFIEMCRANISAD---QATFASILRASAELASL 392 (749)
Q Consensus 319 ~~~~~g~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~---~~t~~~ll~~~~~~~~~ 392 (749)
.+...|++++|...|+++.+.+ ..+|..+...+...|++++|..+++.+...+..++ ..++..+...+...|++
T Consensus 44 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~ 123 (389)
T PRK11788 44 NFLLNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLL 123 (389)
T ss_pred HHHhcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCH
Confidence 3456677777777777765432 23466666777777777777777777766432221 23455666667777777
Q ss_pred HHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCCCC--------cchHHHHHHHHHhcCCHHHHHHH
Q 004487 393 SLGKQLHSFVIRSGFMSNVFSGSALLDMYAKSGSLKDAIQTFKEMPERN--------IVSWNALISACAQNGDAQATLKS 464 (749)
Q Consensus 393 ~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~--------~~~~~~li~~~~~~g~~~~A~~~ 464 (749)
+.|..++..+.+.. +.+..+++.++..|.+.|++++|.+.|+.+.+.+ ...|..+...+.+.|++++|.+.
T Consensus 124 ~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~ 202 (389)
T PRK11788 124 DRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARAL 202 (389)
T ss_pred HHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHH
Confidence 77777777776542 3456677788888888888888888888776321 11345677778889999999999
Q ss_pred HHHHHHCCCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCC--hHHHHHHHHHHHHcCCHHHHHHHHHhC-C
Q 004487 465 FEDMVQSGYQPD-SVSLLSVLSACSHCGLIEEGLQYFNSMTQKYKLRPK--KEHYASMVDILCRSGCFDEAEKLMAQM-P 540 (749)
Q Consensus 465 ~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~~-~ 540 (749)
|+++.+. .|+ ..++..+...+.+.|++++|.++|+++... .|+ ...+..++.+|.+.|++++|.+.++++ .
T Consensus 203 ~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~---~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~ 277 (389)
T PRK11788 203 LKKALAA--DPQCVRASILLGDLALAQGDYAAAIEALERVEEQ---DPEYLSEVLPKLMECYQALGDEAEGLEFLRRALE 277 (389)
T ss_pred HHHHHhH--CcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH---ChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 9999884 344 457777888899999999999999998854 343 456788999999999999999999988 5
Q ss_pred CCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHH---cCCchhHHHHHHHHHhCCCccCCc
Q 004487 541 FEPDEIMWSSVINSCRIHKNLEFAKKAADQLFKMEKLRDAAPYVAMSNIYAV---AGQWESVSQVKKAMRERGVRKVTA 616 (749)
Q Consensus 541 ~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~g~~~~a~~~~~~m~~~g~~~~~~ 616 (749)
..|+...+..+...+...|++++|...++++++..| +...+..+...+.. .|+.+++..+++.|.+++++++|.
T Consensus 278 ~~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~P--~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~ 354 (389)
T PRK11788 278 EYPGADLLLALAQLLEEQEGPEAAQALLREQLRRHP--SLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKPR 354 (389)
T ss_pred hCCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHhCc--CHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCCCC
Confidence 567777778888899999999999999999999988 44566666666554 569999999999999999998887
No 16
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.81 E-value=2.5e-17 Score=165.31 Aligned_cols=418 Identities=14% Similarity=0.162 Sum_probs=328.9
Q ss_pred HHHHHHhCCCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHcCCChHHHHHHHccCCC---CCcchHHHHHHHHHhcCC
Q 004487 179 AALSAGVGLADIALGRQVHAFVVKTNFVENVFVANALLDLYSKHDCVVEARKLFGEMPE---VDGVSYNVMITCYAWNEQ 255 (749)
Q Consensus 179 ~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~ 255 (749)
.+..-..+.|++..|++--..+-... +.+....-.+-..+....+.+....--..... .-..+|+.+...+-..|+
T Consensus 53 ~lah~~yq~gd~~~a~~h~nmv~~~d-~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~~q~ae~ysn~aN~~kerg~ 131 (966)
T KOG4626|consen 53 ELAHRLYQGGDYKQAEKHCNMVGQED-PTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRKNPQGAEAYSNLANILKERGQ 131 (966)
T ss_pred HHHHHHHhccCHHHHHHHHhHhhccC-CCcccceeeehhhhhcccchhhhhhhhhhhhhccchHHHHHHHHHHHHHHhch
Confidence 34444556678887776554443322 22222222333455555555554332222222 234578889999999999
Q ss_pred hhHHHHHHHHHHHCCCCCC-cchHHHHHHHHHccCChHHHHHHHHHHHHhcCCcch-hHHHHHHHHHHhcCCHHHHHHHH
Q 004487 256 YKESLKLFRELQFTRFDRS-QFPFSTLLSVVANKLDLQIGRQIHTQTIVTTAISEV-KVANSLVDMYAKCGRFEEAKEIF 333 (749)
Q Consensus 256 ~~~A~~~~~~m~~~~~~p~-~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~-~~~~~li~~~~~~g~~~~A~~~~ 333 (749)
.++|+.+++.+.+. +|+ ...|..+-.++...|+.+.|.+.+...++.. |+. .+.+.+.......|++.+|...+
T Consensus 132 ~~~al~~y~~aiel--~p~fida~inla~al~~~~~~~~a~~~~~~alqln--P~l~ca~s~lgnLlka~Grl~ea~~cY 207 (966)
T KOG4626|consen 132 LQDALALYRAAIEL--KPKFIDAYINLAAALVTQGDLELAVQCFFEALQLN--PDLYCARSDLGNLLKAEGRLEEAKACY 207 (966)
T ss_pred HHHHHHHHHHHHhc--CchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcC--cchhhhhcchhHHHHhhcccchhHHHH
Confidence 99999999999875 443 4568888889999999999999999888753 433 33445666667789999999988
Q ss_pred HhcCC--CC-cccHHHHHHHHHhCCChhHHHHHHHHHHHCCCCcC-HHhHHHHHHHhcccCcHHHHHHHHHHHHHhCCCC
Q 004487 334 ANLSH--IS-TVPWTAMISAYVQKGNLEEALNLFIEMCRANISAD-QATFASILRASAELASLSLGKQLHSFVIRSGFMS 409 (749)
Q Consensus 334 ~~~~~--~~-~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~ 409 (749)
.+..+ +. .+.|+.|-..+-..|+...|+..|++... +.|+ ...|..+-..+...+.++.|...+....... +.
T Consensus 208 lkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvk--ldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lr-pn 284 (966)
T KOG4626|consen 208 LKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVK--LDPNFLDAYINLGNVYKEARIFDRAVSCYLRALNLR-PN 284 (966)
T ss_pred HHHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhc--CCCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcC-Cc
Confidence 77654 32 35599999999999999999999999876 4565 3567777778888888888887776665543 23
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHhhCCC--CC-cchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHH
Q 004487 410 NVFSGSALLDMYAKSGSLKDAIQTFKEMPE--RN-IVSWNALISACAQNGDAQATLKSFEDMVQSGYQPDSV-SLLSVLS 485 (749)
Q Consensus 410 ~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~ 485 (749)
...++..|...|...|.++-|...+++..+ |+ ...|+.|..++...|+..+|...|.+.+. +.|+.. +.+.|..
T Consensus 285 ~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~--l~p~hadam~NLgn 362 (966)
T KOG4626|consen 285 HAVAHGNLACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALR--LCPNHADAMNNLGN 362 (966)
T ss_pred chhhccceEEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHHHH--hCCccHHHHHHHHH
Confidence 456677788889999999999999998874 44 56899999999999999999999999998 678765 8899999
Q ss_pred HHhccCCHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC-HHhHHHHHHHHHhcCCHH
Q 004487 486 ACSHCGLIEEGLQYFNSMTQKYKLRPK-KEHYASMVDILCRSGCFDEAEKLMAQM-PFEPD-EIMWSSVINSCRIHKNLE 562 (749)
Q Consensus 486 a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~ 562 (749)
.|...|.+++|..+|.... .+.|. ....+.|...|-..|++++|..-+++. .++|+ ...++.+...|...|+++
T Consensus 363 i~~E~~~~e~A~~ly~~al---~v~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAda~~NmGnt~ke~g~v~ 439 (966)
T KOG4626|consen 363 IYREQGKIEEATRLYLKAL---EVFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFADALSNMGNTYKEMGDVS 439 (966)
T ss_pred HHHHhccchHHHHHHHHHH---hhChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchHHHHHHhcchHHHHhhhHH
Confidence 9999999999999998877 45665 457889999999999999999999988 88897 789999999999999999
Q ss_pred HHHHHHHHHhcCCCCCCchhHHHHHHHHHHcCCchhHHHHHHHHHhCC
Q 004487 563 FAKKAADQLFKMEKLRDAAPYVAMSNIYAVAGQWESVSQVKKAMRERG 610 (749)
Q Consensus 563 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 610 (749)
.|.+.+.+++...| .-..++..|+.+|-.+|+..+|..-++...+..
T Consensus 440 ~A~q~y~rAI~~nP-t~AeAhsNLasi~kDsGni~~AI~sY~~aLklk 486 (966)
T KOG4626|consen 440 AAIQCYTRAIQINP-TFAEAHSNLASIYKDSGNIPEAIQSYRTALKLK 486 (966)
T ss_pred HHHHHHHHHHhcCc-HHHHHHhhHHHHhhccCCcHHHHHHHHHHHccC
Confidence 99999999999999 889999999999999999999999999876543
No 17
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.81 E-value=4.1e-16 Score=174.24 Aligned_cols=418 Identities=11% Similarity=0.045 Sum_probs=262.2
Q ss_pred HHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHhCCCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHc
Q 004487 142 FNALITGFAKEGLNEEAIKLFVEMQHLGFKPSDFTFAAALSAGVGLADIALGRQVHAFVVKTNFVENVFVANALLDLYSK 221 (749)
Q Consensus 142 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~ 221 (749)
+......+.+.|++++|+..|++... +.|+...|..+-.++...|+++.|...+..+++.. +.+...+..+..+|..
T Consensus 130 ~k~~G~~~~~~~~~~~Ai~~y~~al~--~~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a~~~~a~a~~~ 206 (615)
T TIGR00990 130 LKEKGNKAYRNKDFNKAIKLYSKAIE--CKPDPVYYSNRAACHNALGDWEKVVEDTTAALELD-PDYSKALNRRANAYDG 206 (615)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHh--cCCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHH
Confidence 44556677788888888888888765 45666666666666666777777776666666543 2234455556666666
Q ss_pred CCChHHHHHHHccCCCCC---cchHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCcchHHHHHHHHHccCChHHHHHHH
Q 004487 222 HDCVVEARKLFGEMPEVD---GVSYNVMITCYAWNEQYKESLKLFRELQFTRFDRSQFPFSTLLSVVANKLDLQIGRQIH 298 (749)
Q Consensus 222 ~g~~~~A~~~f~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~ 298 (749)
.|++++|...|......+ ......++..+.. ..+.....+.... .|
T Consensus 207 lg~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~----~~a~~~~~~~l~~--~~------------------------- 255 (615)
T TIGR00990 207 LGKYADALLDLTASCIIDGFRNEQSAQAVERLLK----KFAESKAKEILET--KP------------------------- 255 (615)
T ss_pred cCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHH----HHHHHHHHHHHhc--CC-------------------------
Confidence 666666665553322111 0001111111000 1111111111111 01
Q ss_pred HHHHHhcCCcchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCCcc---cHHHHHHH---HHhCCChhHHHHHHHHHHHCC-
Q 004487 299 TQTIVTTAISEVKVANSLVDMYAKCGRFEEAKEIFANLSHISTV---PWTAMISA---YVQKGNLEEALNLFIEMCRAN- 371 (749)
Q Consensus 299 ~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~---~~~~li~~---~~~~g~~~~A~~l~~~m~~~g- 371 (749)
.+...+..+.. |......+.+..-+....+.+.. .+..+... ....+++++|++.|++....+
T Consensus 256 ---------~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~ 325 (615)
T TIGR00990 256 ---------ENLPSVTFVGN-YLQSFRPKPRPAGLEDSNELDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGK 325 (615)
T ss_pred ---------CCCCCHHHHHH-HHHHccCCcchhhhhcccccccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCC
Confidence 01111111111 11111111111111111111111 11111111 122457778888888877654
Q ss_pred CCcC-HHhHHHHHHHhcccCcHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCC---CCcchHHH
Q 004487 372 ISAD-QATFASILRASAELASLSLGKQLHSFVIRSGFMSNVFSGSALLDMYAKSGSLKDAIQTFKEMPE---RNIVSWNA 447 (749)
Q Consensus 372 ~~p~-~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~ 447 (749)
..|+ ...+..+...+...|+++.|...+...++.. +.....+..+...|...|++++|...|++..+ .+...|..
T Consensus 326 ~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~-P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~ 404 (615)
T TIGR00990 326 LGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELD-PRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYH 404 (615)
T ss_pred CChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 2343 3455555566667788888888887777653 22355677788888899999999999987653 45678888
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHHc
Q 004487 448 LISACAQNGDAQATLKSFEDMVQSGYQPD-SVSLLSVLSACSHCGLIEEGLQYFNSMTQKYKLRPKKEHYASMVDILCRS 526 (749)
Q Consensus 448 li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~ 526 (749)
+...+...|++++|+..|++.++ +.|+ ...+..+..++...|++++|+..|+...+. .+.+...+..+..++...
T Consensus 405 lg~~~~~~g~~~~A~~~~~kal~--l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~--~P~~~~~~~~lg~~~~~~ 480 (615)
T TIGR00990 405 RAQLHFIKGEFAQAGKDYQKSID--LDPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKN--FPEAPDVYNYYGELLLDQ 480 (615)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHH--cCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHc
Confidence 88999999999999999999988 4565 456777788899999999999999988753 233467888899999999
Q ss_pred CCHHHHHHHHHhC-CCCCCH-H-------hHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHcCCch
Q 004487 527 GCFDEAEKLMAQM-PFEPDE-I-------MWSSVINSCRIHKNLEFAKKAADQLFKMEKLRDAAPYVAMSNIYAVAGQWE 597 (749)
Q Consensus 527 g~~~~A~~~~~~~-~~~p~~-~-------~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 597 (749)
|++++|.+.|++. ...|+. . .++..+..+...|++++|+..++++++++| .+...+..++.+|...|+++
T Consensus 481 g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p-~~~~a~~~la~~~~~~g~~~ 559 (615)
T TIGR00990 481 NKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIIDP-ECDIAVATMAQLLLQQGDVD 559 (615)
T ss_pred cCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCC-CcHHHHHHHHHHHHHccCHH
Confidence 9999999999886 444431 1 122222233446999999999999999999 88889999999999999999
Q ss_pred hHHHHHHHHHhC
Q 004487 598 SVSQVKKAMRER 609 (749)
Q Consensus 598 ~a~~~~~~m~~~ 609 (749)
+|.+.+++..+.
T Consensus 560 eAi~~~e~A~~l 571 (615)
T TIGR00990 560 EALKLFERAAEL 571 (615)
T ss_pred HHHHHHHHHHHH
Confidence 999999988654
No 18
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.81 E-value=4.1e-17 Score=173.06 Aligned_cols=289 Identities=15% Similarity=0.183 Sum_probs=197.7
Q ss_pred HHHhcCChhHHHHHHHHHHHCCCCCC-cchHHHHHHHHHccCChHHHHHHHHHHHHhcCCc---chhHHHHHHHHHHhcC
Q 004487 249 CYAWNEQYKESLKLFRELQFTRFDRS-QFPFSTLLSVVANKLDLQIGRQIHTQTIVTTAIS---EVKVANSLVDMYAKCG 324 (749)
Q Consensus 249 ~~~~~g~~~~A~~~~~~m~~~~~~p~-~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~---~~~~~~~li~~~~~~g 324 (749)
.+...|++++|+..|.++...+ |+ ..++..+...+...|+++.|..+++.+++.+..+ ....+..+...|.+.|
T Consensus 44 ~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g 121 (389)
T PRK11788 44 NFLLNEQPDKAIDLFIEMLKVD--PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAG 121 (389)
T ss_pred HHHhcCChHHHHHHHHHHHhcC--cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCC
Confidence 3455666777777777766542 22 2234444444455555555555555444432111 1234555666666666
Q ss_pred CHHHHHHHHHhcCC---CCcccHHHHHHHHHhCCChhHHHHHHHHHHHCCCCcCHHhHHHHHHHhcccCcHHHHHHHHHH
Q 004487 325 RFEEAKEIFANLSH---ISTVPWTAMISAYVQKGNLEEALNLFIEMCRANISADQATFASILRASAELASLSLGKQLHSF 401 (749)
Q Consensus 325 ~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~ 401 (749)
++++|..+|+++.+ .+..+++.++..+.+.|++++|++.++.+.+.+..++...
T Consensus 122 ~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~----------------------- 178 (389)
T PRK11788 122 LLDRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVE----------------------- 178 (389)
T ss_pred CHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHH-----------------------
Confidence 66666666666543 2333456666666666666666666666654321111000
Q ss_pred HHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCC--C-CcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC--
Q 004487 402 VIRSGFMSNVFSGSALLDMYAKSGSLKDAIQTFKEMPE--R-NIVSWNALISACAQNGDAQATLKSFEDMVQSGYQPD-- 476 (749)
Q Consensus 402 ~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-- 476 (749)
....+..+...+.+.|++++|.+.|+++.+ | +...+..+...|.+.|++++|+++|+++.+. .|+
T Consensus 179 --------~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--~p~~~ 248 (389)
T PRK11788 179 --------IAHFYCELAQQALARGDLDAARALLKKALAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQ--DPEYL 248 (389)
T ss_pred --------HHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--ChhhH
Confidence 012345677778889999999999988763 3 3557778889999999999999999999984 344
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCCHHhHHHHHHHH
Q 004487 477 SVSLLSVLSACSHCGLIEEGLQYFNSMTQKYKLRPKKEHYASMVDILCRSGCFDEAEKLMAQM-PFEPDEIMWSSVINSC 555 (749)
Q Consensus 477 ~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~ll~~~ 555 (749)
..++..+..+|...|++++|.+.++.+.+. .|+...+..++..+.+.|++++|.++++++ ...|+...++.++..+
T Consensus 249 ~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~---~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~~~~~l~~~~ 325 (389)
T PRK11788 249 SEVLPKLMECYQALGDEAEGLEFLRRALEE---YPGADLLLALAQLLEEQEGPEAAQALLREQLRRHPSLRGFHRLLDYH 325 (389)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHHHHHHHHHHh
Confidence 356788899999999999999999998853 677777788999999999999999999877 6679999999888876
Q ss_pred Hh---cCCHHHHHHHHHHHhcCC
Q 004487 556 RI---HKNLEFAKKAADQLFKME 575 (749)
Q Consensus 556 ~~---~g~~~~a~~~~~~~~~~~ 575 (749)
.. +|+.+++...++++++..
T Consensus 326 ~~~~~~g~~~~a~~~~~~~~~~~ 348 (389)
T PRK11788 326 LAEAEEGRAKESLLLLRDLVGEQ 348 (389)
T ss_pred hhccCCccchhHHHHHHHHHHHH
Confidence 54 568889999999888644
No 19
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.76 E-value=3.4e-14 Score=161.77 Aligned_cols=392 Identities=10% Similarity=0.028 Sum_probs=181.2
Q ss_pred HHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHhCCCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHcC
Q 004487 143 NALITGFAKEGLNEEAIKLFVEMQHLGFKPSDFTFAAALSAGVGLADIALGRQVHAFVVKTNFVENVFVANALLDLYSKH 222 (749)
Q Consensus 143 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~ 222 (749)
.-.+......|+.++|++++.+..... ..+...+..+..++...++++.|.+++...++.. +.+......+...+.+.
T Consensus 19 ~d~~~ia~~~g~~~~A~~~~~~~~~~~-~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~l~~~ 96 (765)
T PRK10049 19 ADWLQIALWAGQDAEVITVYNRYRVHM-QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLE-PQNDDYQRGLILTLADA 96 (765)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHC
Confidence 334455566777777777777766421 2233345555555556666666666666555442 22233344455555555
Q ss_pred CChHHHHHHHccCCC--C-CcchHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCcchHHHHHHHHHccCChHHHHHHHH
Q 004487 223 DCVVEARKLFGEMPE--V-DGVSYNVMITCYAWNEQYKESLKLFRELQFTRFDRSQFPFSTLLSVVANKLDLQIGRQIHT 299 (749)
Q Consensus 223 g~~~~A~~~f~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~ 299 (749)
|+.++|...++...+ | +.. |..+...+...|+.++|+..+++...
T Consensus 97 g~~~eA~~~l~~~l~~~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~------------------------------- 144 (765)
T PRK10049 97 GQYDEALVKAKQLVSGAPDKAN-LLALAYVYKRAGRHWDELRAMTQALP------------------------------- 144 (765)
T ss_pred CCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHH-------------------------------
Confidence 555555555554432 1 222 44444455555555555555555443
Q ss_pred HHHHhcCCcchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCCcc--------cHHHHHHHHH-----hCCCh---hHHHHH
Q 004487 300 QTIVTTAISEVKVANSLVDMYAKCGRFEEAKEIFANLSHISTV--------PWTAMISAYV-----QKGNL---EEALNL 363 (749)
Q Consensus 300 ~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~--------~~~~li~~~~-----~~g~~---~~A~~l 363 (749)
.. +.+..++..+..++.+.+..+.|.+.++.... ++. ....++..+. ..+++ ++|++.
T Consensus 145 ----~~-P~~~~~~~~la~~l~~~~~~e~Al~~l~~~~~-~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~ 218 (765)
T PRK10049 145 ----RA-PQTQQYPTEYVQALRNNRLSAPALGAIDDANL-TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQ 218 (765)
T ss_pred ----hC-CCCHHHHHHHHHHHHHCCChHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHH
Confidence 22 12333334455556666667777776665554 111 1111111111 11122 445555
Q ss_pred HHHHHHC-CCCcCHH-hHHHHHHHhcccCcHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCCCC
Q 004487 364 FIEMCRA-NISADQA-TFASILRASAELASLSLGKQLHSFVIRSGFMSNVFSGSALLDMYAKSGSLKDAIQTFKEMPERN 441 (749)
Q Consensus 364 ~~~m~~~-g~~p~~~-t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~ 441 (749)
++.+... ...|+.. .+... ....+.++...|++++|.+.|+.+.+.+
T Consensus 219 ~~~ll~~~~~~p~~~~~~~~a-------------------------------~~d~l~~Ll~~g~~~eA~~~~~~ll~~~ 267 (765)
T PRK10049 219 YDALEALWHDNPDATADYQRA-------------------------------RIDRLGALLARDRYKDVISEYQRLKAEG 267 (765)
T ss_pred HHHHHhhcccCCccchHHHHH-------------------------------HHHHHHHHHHhhhHHHHHHHHHHhhccC
Confidence 5555432 1122111 10000 0000112223345555555555544211
Q ss_pred --cch--HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-----HHHHHHHHHHHhccCCHHHHHHHHHHhHHhcC----
Q 004487 442 --IVS--WNALISACAQNGDAQATLKSFEDMVQSGYQPD-----SVSLLSVLSACSHCGLIEEGLQYFNSMTQKYK---- 508 (749)
Q Consensus 442 --~~~--~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-----~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~---- 508 (749)
... -..+...|...|++++|+..|+++.+.. |. ......+..++...|++++|.++++.+.....
T Consensus 268 ~~~P~~a~~~la~~yl~~g~~e~A~~~l~~~l~~~--p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~ 345 (765)
T PRK10049 268 QIIPPWAQRWVASAYLKLHQPEKAQSILTELFYHP--ETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLR 345 (765)
T ss_pred CCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcC--CCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEe
Confidence 010 1112334455555555555555544321 11 12233334444555555555555555443210
Q ss_pred ------CCCC---hHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHhHHHHHHHHHhcCCHHHHHHHHHHHhcCCCC
Q 004487 509 ------LRPK---KEHYASMVDILCRSGCFDEAEKLMAQM-PFEP-DEIMWSSVINSCRIHKNLEFAKKAADQLFKMEKL 577 (749)
Q Consensus 509 ------~~p~---~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~ 577 (749)
-.|+ ...+..+..++...|++++|++.++++ ...| +...+..+...+...|+.++|+..+++++++.|
T Consensus 346 ~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~P- 424 (765)
T PRK10049 346 LYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPGNQGLRIDYASVLQARGWPRAAENELKKAEVLEP- 424 (765)
T ss_pred ecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCC-
Confidence 0111 122334455555556666666665554 2223 344555555555556666666666666666665
Q ss_pred CCchhHHHHHHHHHHcCCchhHHHHHHHHHh
Q 004487 578 RDAAPYVAMSNIYAVAGQWESVSQVKKAMRE 608 (749)
Q Consensus 578 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 608 (749)
.+...+..++..+...|+|++|..+++.+.+
T Consensus 425 d~~~l~~~~a~~al~~~~~~~A~~~~~~ll~ 455 (765)
T PRK10049 425 RNINLEVEQAWTALDLQEWRQMDVLTDDVVA 455 (765)
T ss_pred CChHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 5555555555556666666666665555543
No 20
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.75 E-value=6.7e-14 Score=148.67 Aligned_cols=538 Identities=14% Similarity=0.119 Sum_probs=345.8
Q ss_pred hhHHHHHHHHhHhcCCCCCCcchHHHHHHhc--CCCCChHHHHHHHHHHHHhCC--CCchhHHHHHHHHhHcCCChhHHH
Q 004487 53 FREAFKLFVDMRTDGGSDPDYVTFATLLSGC--SEPDTANELIQVHADIIKFGY--NSILIICNSLVDSYCKIRCLDLAR 128 (749)
Q Consensus 53 ~~~a~~l~~~m~~~~g~~p~~~~~~~ll~~~--~~~~~~~~a~~~~~~~~~~g~--~~~~~~~~~li~~~~~~g~~~~A~ 128 (749)
.+.|...|....+. .++|.-.+ +.+|| -..+++..|..+|..++.... .||+.+. +-..+.++|+.+.|.
T Consensus 146 ~~~A~a~F~~Vl~~--sp~Nil~L--lGkA~i~ynkkdY~~al~yyk~al~inp~~~aD~rIg--ig~Cf~kl~~~~~a~ 219 (1018)
T KOG2002|consen 146 MDDADAQFHFVLKQ--SPDNILAL--LGKARIAYNKKDYRGALKYYKKALRINPACKADVRIG--IGHCFWKLGMSEKAL 219 (1018)
T ss_pred HHHHHHHHHHHHhh--CCcchHHH--HHHHHHHhccccHHHHHHHHHHHHhcCcccCCCccch--hhhHHHhccchhhHH
Confidence 46777777777654 34443333 33443 355688888888888766543 4555432 224556788888888
Q ss_pred HHHccCCCCCcchHHHHHHHHH------hCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHhCCCChHHHHHHHHHHHH
Q 004487 129 RVFKEMPQKDSVSFNALITGFA------KEGLNEEAIKLFVEMQHLGFKPSDFTFAAALSAGVGLADIALGRQVHAFVVK 202 (749)
Q Consensus 129 ~~~~~m~~~~~~~~~~li~~~~------~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~ 202 (749)
..|.+..+-|...-++++.... ....+..++.++...-... .-++...+.|..-+.-.++...+..+...+.+
T Consensus 220 ~a~~ralqLdp~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n-~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~ 298 (1018)
T KOG2002|consen 220 LAFERALQLDPTCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKEN-NENPVALNHLANHFYFKKDYERVWHLAEHAIK 298 (1018)
T ss_pred HHHHHHHhcChhhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhc-CCCcHHHHHHHHHHhhcccHHHHHHHHHHHHH
Confidence 8888877765554454443221 1123345555555443321 23556667777777888888888888887776
Q ss_pred cCCCC--ChhHHHHHHHHHHcCCChHHHHHHHccCCC--CC--cchHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCc-
Q 004487 203 TNFVE--NVFVANALLDLYSKHDCVVEARKLFGEMPE--VD--GVSYNVMITCYAWNEQYKESLKLFRELQFTRFDRSQ- 275 (749)
Q Consensus 203 ~g~~~--~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~--~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~- 275 (749)
..... -...|--+..+|-..|++++|...|..... +| +..+--+...|.+.|+.+.+...|+..... .||.
T Consensus 299 ~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~--~p~~~ 376 (1018)
T KOG2002|consen 299 NTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQ--LPNNY 376 (1018)
T ss_pred hhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHh--CcchH
Confidence 54221 223456677888888888888888876654 22 334455677888888888888888887654 3443
Q ss_pred chHHHHHHHHHccC----ChHHHHHHHHHHHHhcCCcchhHHHHHHHHHHhcCCHH------HHHHHHHhcC-CCCcccH
Q 004487 276 FPFSTLLSVVANKL----DLQIGRQIHTQTIVTTAISEVKVANSLVDMYAKCGRFE------EAKEIFANLS-HISTVPW 344 (749)
Q Consensus 276 ~t~~~ll~~~~~~~----~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~------~A~~~~~~~~-~~~~~~~ 344 (749)
.|...+-..++..+ ..+.|..+.....+.. +.|...|-.+..+|-...-+. .|..++..-. ...+...
T Consensus 377 etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~-~~d~~a~l~laql~e~~d~~~sL~~~~~A~d~L~~~~~~ip~E~L 455 (1018)
T KOG2002|consen 377 ETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQT-PVDSEAWLELAQLLEQTDPWASLDAYGNALDILESKGKQIPPEVL 455 (1018)
T ss_pred HHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcc-cccHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHcCCCCCHHHH
Confidence 34444444444443 3455555555555443 456667777766666544332 2333332222 2233337
Q ss_pred HHHHHHHHhCCChhHHHHHHHHHHHC---CCCcCH-----HhHH-HHHHHhcccCcHHHHHHHHHHHHHhCCCCchhHHH
Q 004487 345 TAMISAYVQKGNLEEALNLFIEMCRA---NISADQ-----ATFA-SILRASAELASLSLGKQLHSFVIRSGFMSNVFSGS 415 (749)
Q Consensus 345 ~~li~~~~~~g~~~~A~~l~~~m~~~---g~~p~~-----~t~~-~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 415 (749)
|.+..-+...|++++|...|...... ...+|. .|.. .+-...-..++.+.|.+.+..+.+.. -
T Consensus 456 NNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkeh--------p 527 (1018)
T KOG2002|consen 456 NNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEH--------P 527 (1018)
T ss_pred HhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHC--------c
Confidence 88888888888898888888887654 123333 2222 23334455668888888888887753 1
Q ss_pred HHHHHHHhc-------CCHHHHHHHHhhCC---CCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCCCHHHHHHHH
Q 004487 416 ALLDMYAKS-------GSLKDAIQTFKEMP---ERNIVSWNALISACAQNGDAQATLKSFEDMVQSG-YQPDSVSLLSVL 484 (749)
Q Consensus 416 ~li~~y~~~-------g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~t~~~ll 484 (749)
..|++|.+. +...+|...+.... ..++..|+-+...+.....+..|.+-|+...+.- ..+|..+..+|.
T Consensus 528 ~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLG 607 (1018)
T KOG2002|consen 528 GYIDAYLRLGCMARDKNNLYEASLLLKDALNIDSSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALG 607 (1018)
T ss_pred hhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcccCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhh
Confidence 234444443 56677888877765 4567777777778888888888888776665532 236777777777
Q ss_pred HHHhc------------cCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHhC--CCCCCHHhHHH
Q 004487 485 SACSH------------CGLIEEGLQYFNSMTQKYKLRPKKEHYASMVDILCRSGCFDEAEKLMAQM--PFEPDEIMWSS 550 (749)
Q Consensus 485 ~a~~~------------~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~ 550 (749)
+.|.. .+..++|+++|....+. -+.+...-+-+.-.++..|++.+|.++|.+. ....+..+|-.
T Consensus 608 N~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~--dpkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~~~~dv~lN 685 (1018)
T KOG2002|consen 608 NVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRN--DPKNMYAANGIGIVLAEKGRFSEARDIFSQVREATSDFEDVWLN 685 (1018)
T ss_pred HHHHHHhcccccChHHHHHHHHHHHHHHHHHHhc--CcchhhhccchhhhhhhccCchHHHHHHHHHHHHHhhCCceeee
Confidence 76543 34567788887777642 2335556666777788899999999998887 22234568888
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhcC-CCCCCchhHHHHHHHHHHcCCchhHHHHHHHHHhCC
Q 004487 551 VINSCRIHKNLEFAKKAADQLFKM-EKLRDAAPYVAMSNIYAVAGQWESVSQVKKAMRERG 610 (749)
Q Consensus 551 ll~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 610 (749)
+...|...|++..|+++|+..++. .+..++.....|+.++.+.|+|.+|.+.........
T Consensus 686 lah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~~ 746 (1018)
T KOG2002|consen 686 LAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHLA 746 (1018)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhC
Confidence 888999999999999999888764 344677888889999999999999988887766543
No 21
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.75 E-value=8.4e-14 Score=147.97 Aligned_cols=574 Identities=11% Similarity=0.062 Sum_probs=389.5
Q ss_pred hHHHHHHHhcCCC--C-CcchHHHHHHHHHcCCChhHHHHHHHHhHhc-CCCCCCcchHHHHHHhcCCCCChHHHHHHHH
Q 004487 22 LATARELFNSMVD--R-TAVSWTILIGGYSQKNQFREAFKLFVDMRTD-GGSDPDYVTFATLLSGCSEPDTANELIQVHA 97 (749)
Q Consensus 22 ~~~A~~~f~~~~~--~-~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~-~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~ 97 (749)
++.|...|..... | |+-..-.-.......+++..|+.+|...... +..+||+..- +-.++.+.++.+.|...|.
T Consensus 146 ~~~A~a~F~~Vl~~sp~Nil~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~aD~rIg--ig~Cf~kl~~~~~a~~a~~ 223 (1018)
T KOG2002|consen 146 MDDADAQFHFVLKQSPDNILALLGKARIAYNKKDYRGALKYYKKALRINPACKADVRIG--IGHCFWKLGMSEKALLAFE 223 (1018)
T ss_pred HHHHHHHHHHHHhhCCcchHHHHHHHHHHhccccHHHHHHHHHHHHhcCcccCCCccch--hhhHHHhccchhhHHHHHH
Confidence 5889999988744 3 3433333334445778999999999995432 2456666432 1234567888999999999
Q ss_pred HHHHhCCCCchhHHHHHHHHh---HcC---CChhHHHHHHccCC---CCCcchHHHHHHHHHhCCChhHHHHHHHHHHHC
Q 004487 98 DIIKFGYNSILIICNSLVDSY---CKI---RCLDLARRVFKEMP---QKDSVSFNALITGFAKEGLNEEAIKLFVEMQHL 168 (749)
Q Consensus 98 ~~~~~g~~~~~~~~~~li~~~---~~~---g~~~~A~~~~~~m~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 168 (749)
..++..+ ...++++... ... ..+..+..++...- ..|++..+.|..-|...|++..+..+...+...
T Consensus 224 ralqLdp----~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~ 299 (1018)
T KOG2002|consen 224 RALQLDP----TCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKENNENPVALNHLANHFYFKKDYERVWHLAEHAIKN 299 (1018)
T ss_pred HHHhcCh----hhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHh
Confidence 8887653 3333333222 112 23445555554432 257888999999999999999999999988765
Q ss_pred CCC--CChhhHHHHHHHHhCCCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHcCCChHHHHHHHccCCCC---CcchH
Q 004487 169 GFK--PSDFTFAAALSAGVGLADIALGRQVHAFVVKTNFVENVFVANALLDLYSKHDCVVEARKLFGEMPEV---DGVSY 243 (749)
Q Consensus 169 g~~--p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~---~~~~~ 243 (749)
... .-...|-.+-+++-..|+++.|.+.+....+.....-+..+-.|..+|.+.|+++.+...|+.+... +..+.
T Consensus 300 t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm 379 (1018)
T KOG2002|consen 300 TENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETM 379 (1018)
T ss_pred hhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhCcchHHHH
Confidence 311 1234577888999999999999999988887654333455567899999999999999999998763 33455
Q ss_pred HHHHHHHHhcC----ChhHHHHHHHHHHHCCCCCCcchHHHHHHHHHccCChHHHHHHHH----HHHHhcCCcchhHHHH
Q 004487 244 NVMITCYAWNE----QYKESLKLFRELQFTRFDRSQFPFSTLLSVVANKLDLQIGRQIHT----QTIVTTAISEVKVANS 315 (749)
Q Consensus 244 ~~li~~~~~~g----~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~----~~~~~g~~~~~~~~~~ 315 (749)
..+...|+..+ ..+.|..++.+....- ..|...|..+-..+.. ++.......+. .+...+..+.+.+.|.
T Consensus 380 ~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~-~~d~~a~l~laql~e~-~d~~~sL~~~~~A~d~L~~~~~~ip~E~LNN 457 (1018)
T KOG2002|consen 380 KILGCLYAHSAKKQEKRDKASNVLGKVLEQT-PVDSEAWLELAQLLEQ-TDPWASLDAYGNALDILESKGKQIPPEVLNN 457 (1018)
T ss_pred HHHHhHHHhhhhhhHHHHHHHHHHHHHHhcc-cccHHHHHHHHHHHHh-cChHHHHHHHHHHHHHHHHcCCCCCHHHHHh
Confidence 55556666664 3455666665554432 2334445444444433 33333344444 4445666788999999
Q ss_pred HHHHHHhcCCHHHHHHHHHhcCC-------CCcc------c-HHHHHHHHHhCCChhHHHHHHHHHHHCCCCcCHHh-HH
Q 004487 316 LVDMYAKCGRFEEAKEIFANLSH-------ISTV------P-WTAMISAYVQKGNLEEALNLFIEMCRANISADQAT-FA 380 (749)
Q Consensus 316 li~~~~~~g~~~~A~~~~~~~~~-------~~~~------~-~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t-~~ 380 (749)
+...+...|++..|...|+.... ++.. . || +...+-..++++.|.+.|...... .|+-+. |.
T Consensus 458 vaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YN-larl~E~l~~~~~A~e~Yk~Ilke--hp~YId~yl 534 (1018)
T KOG2002|consen 458 VASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYN-LARLLEELHDTEVAEEMYKSILKE--HPGYIDAYL 534 (1018)
T ss_pred HHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHH-HHHHHHhhhhhhHHHHHHHHHHHH--CchhHHHHH
Confidence 99999999999999999987642 2221 1 33 344556677899999999998875 455443 32
Q ss_pred HHHHHhcccCcHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCC-----CCCcchHHHHHHHHHh-
Q 004487 381 SILRASAELASLSLGKQLHSFVIRSGFMSNVFSGSALLDMYAKSGSLKDAIQTFKEMP-----ERNIVSWNALISACAQ- 454 (749)
Q Consensus 381 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~-----~~~~~~~~~li~~~~~- 454 (749)
-++......+...++...+..+.... ..++.+.+.+.+.|.+...+..|.+-|+.+. .+|+.+.-+|.+.|.+
T Consensus 535 Rl~~ma~~k~~~~ea~~~lk~~l~~d-~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~ 613 (1018)
T KOG2002|consen 535 RLGCMARDKNNLYEASLLLKDALNID-SSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQA 613 (1018)
T ss_pred HhhHHHHhccCcHHHHHHHHHHHhcc-cCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHH
Confidence 33222223456777777777766543 3456666667778888888888888666554 2344444444443332
Q ss_pred -----------cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHH
Q 004487 455 -----------NGDAQATLKSFEDMVQSGYQPDSVSLLSVLSACSHCGLIEEGLQYFNSMTQKYKLRPKKEHYASMVDIL 523 (749)
Q Consensus 455 -----------~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~ 523 (749)
.+..++|+++|.+.+... +-|...-+.+.-.++..|++.+|..+|.+..+. ......+|-.+.+.|
T Consensus 614 l~~~~rn~ek~kk~~~KAlq~y~kvL~~d-pkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa--~~~~~dv~lNlah~~ 690 (1018)
T KOG2002|consen 614 LHNPSRNPEKEKKHQEKALQLYGKVLRND-PKNMYAANGIGIVLAEKGRFSEARDIFSQVREA--TSDFEDVWLNLAHCY 690 (1018)
T ss_pred hcccccChHHHHHHHHHHHHHHHHHHhcC-cchhhhccchhhhhhhccCchHHHHHHHHHHHH--HhhCCceeeeHHHHH
Confidence 245778999999888842 335567777777889999999999999988865 233455678888999
Q ss_pred HHcCCHHHHHHHHHhC----CCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCchhHHHHHHHH---------
Q 004487 524 CRSGCFDEAEKLMAQM----PFEPDEIMWSSVINSCRIHKNLEFAKKAADQLFKMEKLRDAAPYVAMSNIY--------- 590 (749)
Q Consensus 524 ~~~g~~~~A~~~~~~~----~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~--------- 590 (749)
..+|++..|++.|+.. .-+.+..+.+.|..++...|.+.+|...+..+..+.| .|+..-..++-..
T Consensus 691 ~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~~p-~~~~v~FN~a~v~kkla~s~lr 769 (1018)
T KOG2002|consen 691 VEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHLAP-SNTSVKFNLALVLKKLAESILR 769 (1018)
T ss_pred HHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCC-ccchHHhHHHHHHHHHHHHHHh
Confidence 9999999999999876 2234678888999999999999999999999999999 6666554444333
Q ss_pred ----------HHcCCchhHHHHHHHHHhCCC
Q 004487 591 ----------AVAGQWESVSQVKKAMRERGV 611 (749)
Q Consensus 591 ----------~~~g~~~~a~~~~~~m~~~g~ 611 (749)
...+..+.|.++|..|.+.+-
T Consensus 770 ~~k~t~eev~~a~~~le~a~r~F~~ls~~~d 800 (1018)
T KOG2002|consen 770 LEKRTLEEVLEAVKELEEARRLFTELSKNGD 800 (1018)
T ss_pred cccccHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 233445667777777766544
No 22
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.75 E-value=8.2e-15 Score=163.08 Aligned_cols=347 Identities=11% Similarity=0.074 Sum_probs=254.1
Q ss_pred cCCChHHHHHHHccCCC------CCcchHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCcchHHHHHHHHHccCChHHH
Q 004487 221 KHDCVVEARKLFGEMPE------VDGVSYNVMITCYAWNEQYKESLKLFRELQFTRFDRSQFPFSTLLSVVANKLDLQIG 294 (749)
Q Consensus 221 ~~g~~~~A~~~f~~~~~------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a 294 (749)
+..+++.---.|..-++ .+....-.++..+.+.|++++|+.+++........+.... ..+..+....|+.+.|
T Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~~~~~l-~~l~~~~l~~g~~~~A 95 (656)
T PRK15174 17 KQEDWEGLCLYFSQHPEKVRDSAGNEQNIILFAIACLRKDETDVGLTLLSDRVLTAKNGRDLL-RRWVISPLASSQPDAV 95 (656)
T ss_pred hhhchhhHhHHhhcccHhhhhhcccccCHHHHHHHHHhcCCcchhHHHhHHHHHhCCCchhHH-HHHhhhHhhcCCHHHH
Confidence 33444444444444443 1223345566777888888888888888877654443333 3334555568888888
Q ss_pred HHHHHHHHHhcCCcchhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CCcccHHHHHHHHHhCCChhHHHHHHHHHHHCC
Q 004487 295 RQIHTQTIVTTAISEVKVANSLVDMYAKCGRFEEAKEIFANLSH---ISTVPWTAMISAYVQKGNLEEALNLFIEMCRAN 371 (749)
Q Consensus 295 ~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g 371 (749)
...++.++... +.+...+..+...+.+.|++++|...|++... .+...|..+...+.+.|++++|...++.+....
T Consensus 96 ~~~l~~~l~~~-P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~ 174 (656)
T PRK15174 96 LQVVNKLLAVN-VCQPEDVLLVASVLLKSKQYATVADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQAISLARTQAQEV 174 (656)
T ss_pred HHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhC
Confidence 88888887764 34556777888889999999999999988764 334458888888999999999999998886643
Q ss_pred CCcCHHhHHHHHHHhcccCcHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCC---CCcchHHHH
Q 004487 372 ISADQATFASILRASAELASLSLGKQLHSFVIRSGFMSNVFSGSALLDMYAKSGSLKDAIQTFKEMPE---RNIVSWNAL 448 (749)
Q Consensus 372 ~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~l 448 (749)
..+ ...+.. +..+...|++++|...+..+.+....++......+...+.+.|+.++|...|++..+ .+...+..+
T Consensus 175 P~~-~~a~~~-~~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~~~~~~~~L 252 (656)
T PRK15174 175 PPR-GDMIAT-CLSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLDGAALRRSL 252 (656)
T ss_pred CCC-HHHHHH-HHHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHH
Confidence 222 222222 334677899999999888877765444444555667788899999999999988763 356677888
Q ss_pred HHHHHhcCCHHH----HHHHHHHHHHCCCCCCH-HHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHH
Q 004487 449 ISACAQNGDAQA----TLKSFEDMVQSGYQPDS-VSLLSVLSACSHCGLIEEGLQYFNSMTQKYKLRPK-KEHYASMVDI 522 (749)
Q Consensus 449 i~~~~~~g~~~~----A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~ 522 (749)
...+.+.|++++ |+..|++..+ ..|+. ..+..+...+...|++++|...++..... .|+ ...+..+..+
T Consensus 253 g~~l~~~G~~~eA~~~A~~~~~~Al~--l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l---~P~~~~a~~~La~~ 327 (656)
T PRK15174 253 GLAYYQSGRSREAKLQAAEHWRHALQ--FNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLAT---HPDLPYVRAMYARA 327 (656)
T ss_pred HHHHHHcCCchhhHHHHHHHHHHHHh--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHH
Confidence 888999999885 7999999988 45654 47888888899999999999999988753 454 4566778889
Q ss_pred HHHcCCHHHHHHHHHhC-CCCCCHHhHH-HHHHHHHhcCCHHHHHHHHHHHhcCCC
Q 004487 523 LCRSGCFDEAEKLMAQM-PFEPDEIMWS-SVINSCRIHKNLEFAKKAADQLFKMEK 576 (749)
Q Consensus 523 ~~~~g~~~~A~~~~~~~-~~~p~~~~~~-~ll~~~~~~g~~~~a~~~~~~~~~~~~ 576 (749)
|.+.|++++|.+.++++ ...|+...+. .+..++...|+.++|...++++++..|
T Consensus 328 l~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~P 383 (656)
T PRK15174 328 LRQVGQYTAASDEFVQLAREKGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQARA 383 (656)
T ss_pred HHHCCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCh
Confidence 99999999999999887 4566654443 345678889999999999999999988
No 23
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.75 E-value=4.9e-14 Score=157.57 Aligned_cols=442 Identities=12% Similarity=0.065 Sum_probs=264.8
Q ss_pred HHHHHHHhHcCCChhHHHHHHccCCC--CCcchHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCC-hhhHHHHHHHHhCC
Q 004487 111 CNSLVDSYCKIRCLDLARRVFKEMPQ--KDSVSFNALITGFAKEGLNEEAIKLFVEMQHLGFKPS-DFTFAAALSAGVGL 187 (749)
Q Consensus 111 ~~~li~~~~~~g~~~~A~~~~~~m~~--~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~ 187 (749)
+...-..|.+.|+++.|...|++... |+...|..+..+|.+.|++++|++.++..++. .|+ ...+..+-.++...
T Consensus 130 ~k~~G~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l--~p~~~~a~~~~a~a~~~l 207 (615)
T TIGR00990 130 LKEKGNKAYRNKDFNKAIKLYSKAIECKPDPVYYSNRAACHNALGDWEKVVEDTTAALEL--DPDYSKALNRRANAYDGL 207 (615)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHc
Confidence 34555677788999999999988654 67777888888899999999999999988774 443 45677788888889
Q ss_pred CChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHcCCChHHHHHHHccCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHH
Q 004487 188 ADIALGRQVHAFVVKTNFVENVFVANALLDLYSKHDCVVEARKLFGEMPEVDGVSYNVMITCYAWNEQYKESLKLFRELQ 267 (749)
Q Consensus 188 ~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 267 (749)
|+++.|..-+..+.......+... ..++.-+.+......+...++.-+ .+..++..+.. |........+..-+.+-.
T Consensus 208 g~~~eA~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~a~~~~~~~l~~~~-~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 284 (615)
T TIGR00990 208 GKYADALLDLTASCIIDGFRNEQS-AQAVERLLKKFAESKAKEILETKP-ENLPSVTFVGN-YLQSFRPKPRPAGLEDSN 284 (615)
T ss_pred CCHHHHHHHHHHHHHhCCCccHHH-HHHHHHHHHHHHHHHHHHHHhcCC-CCCCCHHHHHH-HHHHccCCcchhhhhccc
Confidence 999988877766554432222221 112221111112334444444332 23334443322 222222222221111110
Q ss_pred HCCCCCCcc-hHHHHHHHHHccCChHHHHHHHHHHHHhcCCcchhHHHHHHHHHHhcCCHHHHHHHHHhcCCC------C
Q 004487 268 FTRFDRSQF-PFSTLLSVVANKLDLQIGRQIHTQTIVTTAISEVKVANSLVDMYAKCGRFEEAKEIFANLSHI------S 340 (749)
Q Consensus 268 ~~~~~p~~~-t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~------~ 340 (749)
. ..|... .+..+..... -....+++++|.+.|+...+. .
T Consensus 285 ~--~~~~~~~~~~~l~~~~~--------------------------------e~~~~~~y~~A~~~~~~al~~~~~~~~~ 330 (615)
T TIGR00990 285 E--LDEETGNGQLQLGLKSP--------------------------------ESKADESYEEAARAFEKALDLGKLGEKE 330 (615)
T ss_pred c--cccccccchHHHHHHHH--------------------------------HhhhhhhHHHHHHHHHHHHhcCCCChhh
Confidence 0 011100 0000000000 001123444555555444321 1
Q ss_pred cccHHHHHHHHHhCCChhHHHHHHHHHHHCCCCcC-HHhHHHHHHHhcccCcHHHHHHHHHHHHHhCCCCchhHHHHHHH
Q 004487 341 TVPWTAMISAYVQKGNLEEALNLFIEMCRANISAD-QATFASILRASAELASLSLGKQLHSFVIRSGFMSNVFSGSALLD 419 (749)
Q Consensus 341 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 419 (749)
...|+.+...+...|++++|+..|++.... .|+ ...|..+...+...|+++.|...+..+++.. +.+..++..+..
T Consensus 331 a~a~~~lg~~~~~~g~~~eA~~~~~kal~l--~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~lg~ 407 (615)
T TIGR00990 331 AIALNLRGTFKCLKGKHLEALADLSKSIEL--DPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLN-SEDPDIYYHRAQ 407 (615)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 122444555555566666666666555543 333 3344455555555666666666665555543 234566777788
Q ss_pred HHHhcCCHHHHHHHHhhCCC---CCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCCHHH
Q 004487 420 MYAKSGSLKDAIQTFKEMPE---RNIVSWNALISACAQNGDAQATLKSFEDMVQSGYQPD-SVSLLSVLSACSHCGLIEE 495 (749)
Q Consensus 420 ~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~ 495 (749)
.|...|++++|...|++..+ .+...|..+...+.+.|++++|+..|++... ..|+ ...+..+..++...|++++
T Consensus 408 ~~~~~g~~~~A~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~--~~P~~~~~~~~lg~~~~~~g~~~~ 485 (615)
T TIGR00990 408 LHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGSIASSMATFRRCKK--NFPEAPDVYNYYGELLLDQNKFDE 485 (615)
T ss_pred HHHHcCCHHHHHHHHHHHHHcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCChHHHHHHHHHHHHccCHHH
Confidence 88888888888888887763 3456677788888899999999999999887 3454 5577888888999999999
Q ss_pred HHHHHHHhHHhcCCCCCh-H-------HHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC-HHhHHHHHHHHHhcCCHHHHH
Q 004487 496 GLQYFNSMTQKYKLRPKK-E-------HYASMVDILCRSGCFDEAEKLMAQM-PFEPD-EIMWSSVINSCRIHKNLEFAK 565 (749)
Q Consensus 496 a~~~~~~m~~~~~~~p~~-~-------~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~~a~ 565 (749)
|+..|+.... +.|+. . .++.....+...|++++|.+++++. ...|+ ...+..+...+...|++++|.
T Consensus 486 A~~~~~~Al~---l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~~eAi 562 (615)
T TIGR00990 486 AIEKFDTAIE---LEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIIDPECDIAVATMAQLLLQQGDVDEAL 562 (615)
T ss_pred HHHHHHHHHh---cCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccCHHHHH
Confidence 9999988764 34431 1 1122223344579999999999886 55565 557888999999999999999
Q ss_pred HHHHHHhcCCCCCCchhHHHHHHHHHHcCCchhHHHHHHHHHh
Q 004487 566 KAADQLFKMEKLRDAAPYVAMSNIYAVAGQWESVSQVKKAMRE 608 (749)
Q Consensus 566 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 608 (749)
..++++.++.+ ..... .....|.+|.++....++
T Consensus 563 ~~~e~A~~l~~-~~~e~--------~~a~~~~~a~~~~~~~~~ 596 (615)
T TIGR00990 563 KLFERAAELAR-TEGEL--------VQAISYAEATRTQIQVQE 596 (615)
T ss_pred HHHHHHHHHhc-cHHHH--------HHHHHHHHHHHHHHHHHH
Confidence 99999999877 32221 123345556666554443
No 24
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.75 E-value=8.5e-14 Score=134.32 Aligned_cols=443 Identities=15% Similarity=0.141 Sum_probs=276.3
Q ss_pred chHHHHHHHHHcCCChhHHHHHHHHhHhcCCCCCCcchHHHHHHhcC--CCCChH-HHHHHHHHHHHhCCCCchhHHHHH
Q 004487 38 VSWTILIGGYSQKNQFREAFKLFVDMRTDGGSDPDYVTFATLLSGCS--EPDTAN-ELIQVHADIIKFGYNSILIICNSL 114 (749)
Q Consensus 38 ~~~~~li~~~~~~g~~~~a~~l~~~m~~~~g~~p~~~~~~~ll~~~~--~~~~~~-~a~~~~~~~~~~g~~~~~~~~~~l 114 (749)
++=|.|+.. ..+|...++.-+|+.|+.. |++.+...-..|++..+ ....+- .-++-|-.|.+.|-.. ..+|
T Consensus 117 ~~E~nL~km-IS~~EvKDs~ilY~~m~~e-~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~S-~~sW--- 190 (625)
T KOG4422|consen 117 ETENNLLKM-ISSREVKDSCILYERMRSE-NVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGEDS-TSSW--- 190 (625)
T ss_pred cchhHHHHH-HhhcccchhHHHHHHHHhc-CCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhcccccccc-cccc---
Confidence 345555543 4577888888899999988 77777665555544322 222222 1223344444444322 2222
Q ss_pred HHHhHcCCChhHHHHHHccCCCCCcchHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHhCCCChHHHH
Q 004487 115 VDSYCKIRCLDLARRVFKEMPQKDSVSFNALITGFAKEGLNEEAIKLFVEMQHLGFKPSDFTFAAALSAGVGLADIALGR 194 (749)
Q Consensus 115 i~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~ 194 (749)
+.|++.+ -+|+..| +...++..||.++++--..+.|.++|++-.....+.+..+||.+|.+.+- ..++
T Consensus 191 -----K~G~vAd--L~~E~~P-KT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~----~~~K 258 (625)
T KOG4422|consen 191 -----KSGAVAD--LLFETLP-KTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSY----SVGK 258 (625)
T ss_pred -----ccccHHH--HHHhhcC-CCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHh----hccH
Confidence 3454433 4555555 45678999999999999999999999999998899999999999987653 3448
Q ss_pred HHHHHHHHcCCCCChhHHHHHHHHHHcCCChHHHHHHHccCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC
Q 004487 195 QVHAFVVKTNFVENVFVANALLDLYSKHDCVVEARKLFGEMPEVDGVSYNVMITCYAWNEQYKESLKLFRELQFTRFDRS 274 (749)
Q Consensus 195 ~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~ 274 (749)
.+..+|+.....||..|+|+++...++.|+++.|++. |++++.+|++-|+.|.
T Consensus 259 ~Lv~EMisqkm~Pnl~TfNalL~c~akfg~F~~ar~a---------------------------alqil~EmKeiGVePs 311 (625)
T KOG4422|consen 259 KLVAEMISQKMTPNLFTFNALLSCAAKFGKFEDARKA---------------------------ALQILGEMKEIGVEPS 311 (625)
T ss_pred HHHHHHHHhhcCCchHhHHHHHHHHHHhcchHHHHHH---------------------------HHHHHHHHHHhCCCcc
Confidence 8999999999999999999999999999999988755 3555566666666666
Q ss_pred cchHHHHHHHHHccCChHH-HHHHHHHHHH----hcCCc----chhHHHHHHHHHHhcCCHHHHHHHHHhcCCC------
Q 004487 275 QFPFSTLLSVVANKLDLQI-GRQIHTQTIV----TTAIS----EVKVANSLVDMYAKCGRFEEAKEIFANLSHI------ 339 (749)
Q Consensus 275 ~~t~~~ll~~~~~~~~~~~-a~~~~~~~~~----~g~~~----~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~------ 339 (749)
..+|..+|..+.+.++... +..+...+.. ..+.| |...+...++.+.+..+.+-|.++-.-....
T Consensus 312 LsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~i 391 (625)
T KOG4422|consen 312 LSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFI 391 (625)
T ss_pred hhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhc
Confidence 6666666665555554432 2222222222 11211 3334444555555555555555554433321
Q ss_pred --C---cccHHHHHHHHHhCCChhHHHHHHHHHHHCCCCcCHHhHHHHHHHhcccCcHHHHHHHHHHHHHhCCCCchhHH
Q 004487 340 --S---TVPWTAMISAYVQKGNLEEALNLFIEMCRANISADQATFASILRASAELASLSLGKQLHSFVIRSGFMSNVFSG 414 (749)
Q Consensus 340 --~---~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 414 (749)
+ ..-|..+....++....+.-+..|+.|.-.-+-|+..+...+++|....+.++...+++..++..|........
T Consensus 392 g~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~ 471 (625)
T KOG4422|consen 392 GPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLR 471 (625)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHH
Confidence 1 11156677778888888999999999988888899999999999999999999999999988887754433333
Q ss_pred HHHHHHHHhcCCHHHHHHHHhhCCCCCcchHHHHHHHHHhc-CCHHH-HHHHHHHHHHCCCCCCHHHHHHHHHHHhccCC
Q 004487 415 SALLDMYAKSGSLKDAIQTFKEMPERNIVSWNALISACAQN-GDAQA-TLKSFEDMVQSGYQPDSVSLLSVLSACSHCGL 492 (749)
Q Consensus 415 ~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~-g~~~~-A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~ 492 (749)
--++..+++.. +.|+...-..+-.+.++. -++.+ ....-.+|.+....|. ..+.++-.+.+.|.
T Consensus 472 eeil~~L~~~k------------~hp~tp~r~Ql~~~~ak~aad~~e~~e~~~~R~r~~~~~~t--~l~~ia~Ll~R~G~ 537 (625)
T KOG4422|consen 472 EEILMLLARDK------------LHPLTPEREQLQVAFAKCAADIKEAYESQPIRQRAQDWPAT--SLNCIAILLLRAGR 537 (625)
T ss_pred HHHHHHHhcCC------------CCCCChHHHHHHHHHHHHHHHHHHHHHhhHHHHHhccCChh--HHHHHHHHHHHcch
Confidence 22222222211 122222111111111110 01111 1222334555444443 34444445678888
Q ss_pred HHHHHHHHHHhHHhcCCCCChHHHHH---HHHHHHHcCCHHHHHHHHHhC
Q 004487 493 IEEGLQYFNSMTQKYKLRPKKEHYAS---MVDILCRSGCFDEAEKLMAQM 539 (749)
Q Consensus 493 ~~~a~~~~~~m~~~~~~~p~~~~~~~---li~~~~~~g~~~~A~~~~~~~ 539 (749)
.++|.++|..+.++.+-.|.....++ +++.-.+....-.|...++-|
T Consensus 538 ~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~~spsqA~~~lQ~a 587 (625)
T KOG4422|consen 538 TQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKVSNSPSQAIEVLQLA 587 (625)
T ss_pred HHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 88888888877655554555444554 445556667777777777766
No 25
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.74 E-value=3.6e-14 Score=161.57 Aligned_cols=363 Identities=12% Similarity=0.075 Sum_probs=217.9
Q ss_pred HHHHHHcCCChHHHHHHHccCCC---CCcchHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC-cchHHHHHHHHHccCC
Q 004487 215 LLDLYSKHDCVVEARKLFGEMPE---VDGVSYNVMITCYAWNEQYKESLKLFRELQFTRFDRS-QFPFSTLLSVVANKLD 290 (749)
Q Consensus 215 Li~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~t~~~ll~~~~~~~~ 290 (749)
.+......|+.++|.+++.+... .+...+..+...+.+.|++++|..++++.... .|+ ......+...+...|+
T Consensus 21 ~~~ia~~~g~~~~A~~~~~~~~~~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~la~~l~~~g~ 98 (765)
T PRK10049 21 WLQIALWAGQDAEVITVYNRYRVHMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSL--EPQNDDYQRGLILTLADAGQ 98 (765)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCC
Confidence 33344444555555555544432 12223445555555555555555555554432 222 1222233333444444
Q ss_pred hHHHHHHHHHHHHhcCCcchhHHHHHHHHHHhcCCHHHHHHHHHhcCCC---CcccHHHHHHHHHhCCChhHHHHHHHHH
Q 004487 291 LQIGRQIHTQTIVTTAISEVKVANSLVDMYAKCGRFEEAKEIFANLSHI---STVPWTAMISAYVQKGNLEEALNLFIEM 367 (749)
Q Consensus 291 ~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m 367 (749)
.+.|...++.+++.. +.+.. +..+..++...|+.++|...++++.+. +...+..+...+...+..++|++.++..
T Consensus 99 ~~eA~~~l~~~l~~~-P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~~~~~e~Al~~l~~~ 176 (765)
T PRK10049 99 YDEALVKAKQLVSGA-PDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQTQQYPTEYVQALRNNRLSAPALGAIDDA 176 (765)
T ss_pred HHHHHHHHHHHHHhC-CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHhC
Confidence 444444444444441 22333 566677777788888888888776542 2233555666777777778787777654
Q ss_pred HHCCCCcCHHhHHHHHHHhcccCcHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCH---HHHHHHHhhCCC-----
Q 004487 368 CRANISADQATFASILRASAELASLSLGKQLHSFVIRSGFMSNVFSGSALLDMYAKSGSL---KDAIQTFKEMPE----- 439 (749)
Q Consensus 368 ~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~---~~A~~~~~~~~~----- 439 (749)
.. .|+.... + ....+. ...+ ..+.......+++ ++|.+.++.+.+
T Consensus 177 ~~---~p~~~~~---l-------~~~~~~----~~~r----------~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~ 229 (765)
T PRK10049 177 NL---TPAEKRD---L-------EADAAA----ELVR----------LSFMPTRSEKERYAIADRALAQYDALEALWHDN 229 (765)
T ss_pred CC---CHHHHHH---H-------HHHHHH----HHHH----------hhcccccChhHHHHHHHHHHHHHHHHHhhcccC
Confidence 32 3331000 0 000000 0000 0000111122223 566666665551
Q ss_pred CCcc-hH----HHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCC--
Q 004487 440 RNIV-SW----NALISACAQNGDAQATLKSFEDMVQSGYQ-PDSVSLLSVLSACSHCGLIEEGLQYFNSMTQKYKLRP-- 511 (749)
Q Consensus 440 ~~~~-~~----~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-- 511 (749)
|+.. .+ ...+.++...|++++|+..|+++.+.+.+ |+.. ...+..+|...|++++|+.+|+.+.+.....+
T Consensus 230 p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~a-~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~ 308 (765)
T PRK10049 230 PDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPWA-QRWVASAYLKLHQPEKAQSILTELFYHPETIADL 308 (765)
T ss_pred CccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHHH-HHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCC
Confidence 2211 11 11133456779999999999999987532 4432 22356689999999999999999875321111
Q ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-------------C---HHhHHHHHHHHHhcCCHHHHHHHHHHHhcC
Q 004487 512 KKEHYASMVDILCRSGCFDEAEKLMAQM-PFEP-------------D---EIMWSSVINSCRIHKNLEFAKKAADQLFKM 574 (749)
Q Consensus 512 ~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-------------~---~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 574 (749)
.......+..++...|++++|.++++++ ...| + ...+..+...+...|+.++|+..++++.+.
T Consensus 309 ~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~ 388 (765)
T PRK10049 309 SDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYN 388 (765)
T ss_pred ChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 1355677778899999999999999988 2223 2 224455667788999999999999999999
Q ss_pred CCCCCchhHHHHHHHHHHcCCchhHHHHHHHHHhCC
Q 004487 575 EKLRDAAPYVAMSNIYAVAGQWESVSQVKKAMRERG 610 (749)
Q Consensus 575 ~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 610 (749)
.| .+...+..++.++...|+.++|.+.+++..+..
T Consensus 389 ~P-~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~ 423 (765)
T PRK10049 389 AP-GNQGLRIDYASVLQARGWPRAAENELKKAEVLE 423 (765)
T ss_pred CC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC
Confidence 99 999999999999999999999999999987754
No 26
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.72 E-value=3.8e-14 Score=157.78 Aligned_cols=324 Identities=12% Similarity=0.031 Sum_probs=261.9
Q ss_pred chHHHHHHHHHccCChHHHHHHHHHHHHhcCCcchhHHHHHHHHHHhcCCHHHHHHHHHhcCCC---CcccHHHHHHHHH
Q 004487 276 FPFSTLLSVVANKLDLQIGRQIHTQTIVTTAISEVKVANSLVDMYAKCGRFEEAKEIFANLSHI---STVPWTAMISAYV 352 (749)
Q Consensus 276 ~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~ 352 (749)
.-...++..+.+.|+.+.|..++..++.....+.... ..++......|+.++|...|+.+... +...|..+...+.
T Consensus 43 ~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~~~~~l-~~l~~~~l~~g~~~~A~~~l~~~l~~~P~~~~a~~~la~~l~ 121 (656)
T PRK15174 43 QNIILFAIACLRKDETDVGLTLLSDRVLTAKNGRDLL-RRWVISPLASSQPDAVLQVVNKLLAVNVCQPEDVLLVASVLL 121 (656)
T ss_pred cCHHHHHHHHHhcCCcchhHHHhHHHHHhCCCchhHH-HHHhhhHhhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Confidence 3455677788899999999999999988865554444 44556667799999999999998643 3445888889999
Q ss_pred hCCChhHHHHHHHHHHHCCCCc-CHHhHHHHHHHhcccCcHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHH
Q 004487 353 QKGNLEEALNLFIEMCRANISA-DQATFASILRASAELASLSLGKQLHSFVIRSGFMSNVFSGSALLDMYAKSGSLKDAI 431 (749)
Q Consensus 353 ~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~ 431 (749)
+.|++++|+..|++.... .| +...+..+...+...|+.+.|...+..+......+.. .+..+ ..+.+.|++++|.
T Consensus 122 ~~g~~~~Ai~~l~~Al~l--~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~~~-a~~~~-~~l~~~g~~~eA~ 197 (656)
T PRK15174 122 KSKQYATVADLAEQAWLA--FSGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPPRGD-MIATC-LSFLNKSRLPEDH 197 (656)
T ss_pred HcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCCHH-HHHHH-HHHHHcCCHHHHH
Confidence 999999999999999874 45 4567778888899999999999999887766543333 33333 3478899999999
Q ss_pred HHHhhCCCC----CcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCCHHH----HHHHHHH
Q 004487 432 QTFKEMPER----NIVSWNALISACAQNGDAQATLKSFEDMVQSGYQPD-SVSLLSVLSACSHCGLIEE----GLQYFNS 502 (749)
Q Consensus 432 ~~~~~~~~~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~----a~~~~~~ 502 (749)
..++.+.+. +...+..+...+...|++++|+..|+++.+. .|+ ...+..+..++...|++++ |...|+.
T Consensus 198 ~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~--~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~ 275 (656)
T PRK15174 198 DLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALAR--GLDGAALRRSLGLAYYQSGRSREAKLQAAEHWRH 275 (656)
T ss_pred HHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHH
Confidence 999987642 2334455567888999999999999999984 454 4577788889999999986 8999998
Q ss_pred hHHhcCCCC-ChHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC-HHhHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCC
Q 004487 503 MTQKYKLRP-KKEHYASMVDILCRSGCFDEAEKLMAQM-PFEPD-EIMWSSVINSCRIHKNLEFAKKAADQLFKMEKLRD 579 (749)
Q Consensus 503 m~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~ 579 (749)
..+ +.| +...+..+...+.+.|++++|...+++. ...|+ ...+..+..++...|++++|...++++.+..| .+
T Consensus 276 Al~---l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P-~~ 351 (656)
T PRK15174 276 ALQ---FNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYARALRQVGQYTAASDEFVQLAREKG-VT 351 (656)
T ss_pred HHh---hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCc-cc
Confidence 884 355 4678889999999999999999999988 55564 66778888899999999999999999999999 77
Q ss_pred chhHHHHHHHHHHcCCchhHHHHHHHHHhCC
Q 004487 580 AAPYVAMSNIYAVAGQWESVSQVKKAMRERG 610 (749)
Q Consensus 580 ~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 610 (749)
...+..++.++...|++++|...++...+..
T Consensus 352 ~~~~~~~a~al~~~G~~deA~~~l~~al~~~ 382 (656)
T PRK15174 352 SKWNRYAAAALLQAGKTSEAESVFEHYIQAR 382 (656)
T ss_pred hHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 6667778899999999999999999987654
No 27
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.71 E-value=2.5e-13 Score=151.47 Aligned_cols=426 Identities=11% Similarity=0.084 Sum_probs=206.6
Q ss_pred hHcCCChhHHHHHHccCCCCCcc---hHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHH---HHHHHHhCCCChH
Q 004487 118 YCKIRCLDLARRVFKEMPQKDSV---SFNALITGFAKEGLNEEAIKLFVEMQHLGFKPSDFTFA---AALSAGVGLADIA 191 (749)
Q Consensus 118 ~~~~g~~~~A~~~~~~m~~~~~~---~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~---~ll~a~~~~~~~~ 191 (749)
.++.|+++.|+..|++..+.+.. ....++..+...|+.++|+..+++.. .|+...+. .+...+...|+++
T Consensus 44 ~~r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~----~p~n~~~~~llalA~ly~~~gdyd 119 (822)
T PRK14574 44 RARAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQ----SSMNISSRGLASAARAYRNEKRWD 119 (822)
T ss_pred HHhCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhc----cCCCCCHHHHHHHHHHHHHcCCHH
Confidence 45666666666666666542222 12256666666666666666666655 23222221 1223444455555
Q ss_pred HHHHHHHHHHHcCCCCChhHHHHHHHHHHcCCChHHHHHHHccCCCCCcchHHHHHHHHHh--cCChhHHHHHHHHHHHC
Q 004487 192 LGRQVHAFVVKTNFVENVFVANALLDLYSKHDCVVEARKLFGEMPEVDGVSYNVMITCYAW--NEQYKESLKLFRELQFT 269 (749)
Q Consensus 192 ~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~--~g~~~~A~~~~~~m~~~ 269 (749)
.|.++++.+++.... +..++..|+..|...++.++|.+.++.+...+......+..+|.. .++..+|++.++++
T Consensus 120 ~Aiely~kaL~~dP~-n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~l~layL~~~~~~~~~AL~~~ekl--- 195 (822)
T PRK14574 120 QALALWQSSLKKDPT-NPDLISGMIMTQADAGRGGVVLKQATELAERDPTVQNYMTLSYLNRATDRNYDALQASSEA--- 195 (822)
T ss_pred HHHHHHHHHHhhCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHHHHHHHHHHhcchHHHHHHHHHHH---
Confidence 555555555554322 233334445555555555555555555444222211112222222 22232344444444
Q ss_pred CCCCCcchHHHHHHHHHccCChHHHHHHHHHHHHhcCCcchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCCccc---HHH
Q 004487 270 RFDRSQFPFSTLLSVVANKLDLQIGRQIHTQTIVTTAISEVKVANSLVDMYAKCGRFEEAKEIFANLSHISTVP---WTA 346 (749)
Q Consensus 270 ~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~ 346 (749)
++.. +.+...+..++....+.|-...|.++.++-+. ..+ +.-
T Consensus 196 --------------------------------l~~~-P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~--~f~~~~~~~ 240 (822)
T PRK14574 196 --------------------------------VRLA-PTSEEVLKNHLEILQRNRIVEPALRLAKENPN--LVSAEHYRQ 240 (822)
T ss_pred --------------------------------HHhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCcc--ccCHHHHHH
Confidence 3332 44566777888888888888888887776542 222 111
Q ss_pred HHHHHHhCCChhHHHHHHHHHHHCCCCcCHHhHHHHHHHhcccCc---HHHHHHHHHHHHHh-CCCCc-hhH-HHH---H
Q 004487 347 MISAYVQKGNLEEALNLFIEMCRANISADQATFASILRASAELAS---LSLGKQLHSFVIRS-GFMSN-VFS-GSA---L 417 (749)
Q Consensus 347 li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~---~~~a~~~~~~~~~~-~~~~~-~~~-~~~---l 417 (749)
+ .. +.|-+ +++.+..|+. ....+ .+.+..-++.+... +-.|. ... ..+ .
T Consensus 241 l-~~-------~~~a~----~vr~a~~~~~----------~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Dr 298 (822)
T PRK14574 241 L-ER-------DAAAE----QVRMAVLPTR----------SETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDR 298 (822)
T ss_pred H-HH-------HHHHH----HHhhcccccc----------cchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHH
Confidence 1 00 00000 0000000000 00001 12222222222221 11111 011 111 2
Q ss_pred HHHHHhcCCHHHHHHHHhhCCCCC--cc--hHHHHHHHHHhcCCHHHHHHHHHHHHHCC-----CCCCHHHHHHHHHHHh
Q 004487 418 LDMYAKSGSLKDAIQTFKEMPERN--IV--SWNALISACAQNGDAQATLKSFEDMVQSG-----YQPDSVSLLSVLSACS 488 (749)
Q Consensus 418 i~~y~~~g~~~~A~~~~~~~~~~~--~~--~~~~li~~~~~~g~~~~A~~~~~~m~~~g-----~~p~~~t~~~ll~a~~ 488 (749)
+-++.+.|+..++.+.|+.+..+. +. +-.++.++|...+++++|+.+|+++.... ..++......|..++.
T Consensus 299 l~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~l 378 (822)
T PRK14574 299 LGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLN 378 (822)
T ss_pred HHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHH
Confidence 233445566666666666665211 12 33345556666666666666666654432 1112222345566666
Q ss_pred ccCCHHHHHHHHHHhHHhcC----------CCCCh---HHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHhHHHHHH
Q 004487 489 HCGLIEEGLQYFNSMTQKYK----------LRPKK---EHYASMVDILCRSGCFDEAEKLMAQM-PFEP-DEIMWSSVIN 553 (749)
Q Consensus 489 ~~g~~~~a~~~~~~m~~~~~----------~~p~~---~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~ 553 (749)
..+++++|..+++.+.+... -.|+. ..+..++..+...|++.+|++.++++ ...| |..++..+..
T Consensus 379 d~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~aP~n~~l~~~~A~ 458 (822)
T PRK14574 379 ESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTAPANQNLRIALAS 458 (822)
T ss_pred hcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 66666666666666654200 01111 22334455566666666666666666 2333 4556666666
Q ss_pred HHHhcCCHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHcCCchhHHHHHHHHHhC
Q 004487 554 SCRIHKNLEFAKKAADQLFKMEKLRDAAPYVAMSNIYAVAGQWESVSQVKKAMRER 609 (749)
Q Consensus 554 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 609 (749)
.++..|....|+..++.+..++| .+......++..+...|+|++|.++.....+.
T Consensus 459 v~~~Rg~p~~A~~~~k~a~~l~P-~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~~ 513 (822)
T PRK14574 459 IYLARDLPRKAEQELKAVESLAP-RSLILERAQAETAMALQEWHQMELLTDDVISR 513 (822)
T ss_pred HHHhcCCHHHHHHHHHHHhhhCC-ccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhh
Confidence 66666666666666666666666 66666666666666666666666666555443
No 28
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.71 E-value=5.1e-13 Score=148.97 Aligned_cols=439 Identities=8% Similarity=-0.000 Sum_probs=298.7
Q ss_pred CCCCChHHHHHHHHHHHHhCCCCchhHHHHHHHHhHcCCChhHHHHHHccCCCCCcchH-HHH--HHHHHhCCChhHHHH
Q 004487 84 SEPDTANELIQVHADIIKFGYNSILIICNSLVDSYCKIRCLDLARRVFKEMPQKDSVSF-NAL--ITGFAKEGLNEEAIK 160 (749)
Q Consensus 84 ~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~-~~l--i~~~~~~g~~~~A~~ 160 (749)
.+.|++..|...+.++++........++ .++..+...|+.++|+..+++...|+...+ ..+ ...|...|++++|++
T Consensus 45 ~r~Gd~~~Al~~L~qaL~~~P~~~~av~-dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~llalA~ly~~~gdyd~Aie 123 (822)
T PRK14574 45 ARAGDTAPVLDYLQEESKAGPLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLASAARAYRNEKRWDQALA 123 (822)
T ss_pred HhCCCHHHHHHHHHHHHhhCccchhhHH-HHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 4677778888888888777543323344 788888888999999999999887644443 333 446778899999999
Q ss_pred HHHHHHHCCCCCChhhHHHHHHHHhCCCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHcCCChHHHHHHHccCCC--C
Q 004487 161 LFVEMQHLGFKPSDFTFAAALSAGVGLADIALGRQVHAFVVKTNFVENVFVANALLDLYSKHDCVVEARKLFGEMPE--V 238 (749)
Q Consensus 161 l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~--~ 238 (749)
+|+++.+.. +-+...+..+...+...++.+.|.+.+..+.+.. |+...+..++..+...++..+|.+.++++.+ |
T Consensus 124 ly~kaL~~d-P~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~d--p~~~~~l~layL~~~~~~~~~AL~~~ekll~~~P 200 (822)
T PRK14574 124 LWQSSLKKD-PTNPDLISGMIMTQADAGRGGVVLKQATELAERD--PTVQNYMTLSYLNRATDRNYDALQASSEAVRLAP 200 (822)
T ss_pred HHHHHHhhC-CCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccC--cchHHHHHHHHHHHhcchHHHHHHHHHHHHHhCC
Confidence 999998863 2234556677778888899999999998887763 4455555566666556777679999998876 3
Q ss_pred -CcchHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCcchHHHHHHHHHccCChHHHHHHHHHHHHhcCCcchhHHHHHH
Q 004487 239 -DGVSYNVMITCYAWNEQYKESLKLFRELQFTRFDRSQFPFSTLLSVVANKLDLQIGRQIHTQTIVTTAISEVKVANSLV 317 (749)
Q Consensus 239 -~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li 317 (749)
+...+..+...+.+.|-...|+++..+ .|+.++-. . ..
T Consensus 201 ~n~e~~~~~~~~l~~~~~~~~a~~l~~~------~p~~f~~~------------------------------~-----~~ 239 (822)
T PRK14574 201 TSEEVLKNHLEILQRNRIVEPALRLAKE------NPNLVSAE------------------------------H-----YR 239 (822)
T ss_pred CCHHHHHHHHHHHHHcCCcHHHHHHHHh------CccccCHH------------------------------H-----HH
Confidence 445667777888888888888877665 23322210 0 00
Q ss_pred HHHHhcCCHHHHHHHHHhcCCCCcccHHHHHHHHHhCCChhHHHHHHHHHHHC-CCCcCH-Hh----HHHHHHHhcccCc
Q 004487 318 DMYAKCGRFEEAKEIFANLSHISTVPWTAMISAYVQKGNLEEALNLFIEMCRA-NISADQ-AT----FASILRASAELAS 391 (749)
Q Consensus 318 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~-g~~p~~-~t----~~~ll~~~~~~~~ 391 (749)
. =+.+.|.+..+....+... .-. +---.+.|+.-++.+... +-.|.. .- ..--+-++...++
T Consensus 240 ~-----l~~~~~a~~vr~a~~~~~~----~~~---r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r 307 (822)
T PRK14574 240 Q-----LERDAAAEQVRMAVLPTRS----ETE---RFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQ 307 (822)
T ss_pred H-----HHHHHHHHHHhhccccccc----chh---hHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhh
Confidence 0 0112222222211100000 000 000124455555554431 112321 11 1233456677777
Q ss_pred HHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCCC---------CcchHHHHHHHHHhcCCHHHHH
Q 004487 392 LSLGKQLHSFVIRSGFMSNVFSGSALLDMYAKSGSLKDAIQTFKEMPER---------NIVSWNALISACAQNGDAQATL 462 (749)
Q Consensus 392 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~---------~~~~~~~li~~~~~~g~~~~A~ 462 (749)
...+...++.+...+.+....+--++.++|...+++++|..+|+.+... +......|.-+|...+++++|.
T Consensus 308 ~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~ 387 (822)
T PRK14574 308 TADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAY 387 (822)
T ss_pred HHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHH
Confidence 8888888888877776656667788888888888888888888877431 1222466788888899999999
Q ss_pred HHHHHHHHCC-------------CCCCHH-HHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHHcCC
Q 004487 463 KSFEDMVQSG-------------YQPDSV-SLLSVLSACSHCGLIEEGLQYFNSMTQKYKLRPKKEHYASMVDILCRSGC 528 (749)
Q Consensus 463 ~~~~~m~~~g-------------~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~ 528 (749)
.+++++.+.- ..||-. .+..+...+...|++.+|++.++.+... -+-|......+.+.+...|.
T Consensus 388 ~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~--aP~n~~l~~~~A~v~~~Rg~ 465 (822)
T PRK14574 388 QFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSST--APANQNLRIALASIYLARDL 465 (822)
T ss_pred HHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhcCC
Confidence 9999888731 112333 3445566788999999999999999753 34478889999999999999
Q ss_pred HHHHHHHHHhC-CCCCC-HHhHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCchh
Q 004487 529 FDEAEKLMAQM-PFEPD-EIMWSSVINSCRIHKNLEFAKKAADQLFKMEKLRDAAP 582 (749)
Q Consensus 529 ~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 582 (749)
+.+|++.++.. ...|+ ..+...+..+....+++++|..+.+.+.+..| .+..+
T Consensus 466 p~~A~~~~k~a~~l~P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~~~P-e~~~~ 520 (822)
T PRK14574 466 PRKAEQELKAVESLAPRSLILERAQAETAMALQEWHQMELLTDDVISRSP-EDIPS 520 (822)
T ss_pred HHHHHHHHHHHhhhCCccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhCC-CchhH
Confidence 99999999777 55675 55666777788888999999999999999999 66643
No 29
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.67 E-value=2.9e-13 Score=130.68 Aligned_cols=266 Identities=19% Similarity=0.227 Sum_probs=182.8
Q ss_pred HHHhcCCCCCcchHHHHHHHHHcCCChhHHHHHHHHhHhcCCCCCCcchHHHHHHhcCCCCChHHHHHHHHHHHHhCCCC
Q 004487 27 ELFNSMVDRTAVSWTILIGGYSQKNQFREAFKLFVDMRTDGGSDPDYVTFATLLSGCSEPDTANELIQVHADIIKFGYNS 106 (749)
Q Consensus 27 ~~f~~~~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~ 106 (749)
-+|+..|+ ...+|.+||+++++--..+.|.++|++.... ..+.+..+||.+|.+.+- ..++.+..+|+.....|
T Consensus 198 L~~E~~PK-T~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~-k~kv~~~aFN~lI~~~S~----~~~K~Lv~EMisqkm~P 271 (625)
T KOG4422|consen 198 LLFETLPK-TDETVSIMIAGLCKFSSLERARELYKEHRAA-KGKVYREAFNGLIGASSY----SVGKKLVAEMISQKMTP 271 (625)
T ss_pred HHHhhcCC-CchhHHHHHHHHHHHHhHHHHHHHHHHHHHh-hheeeHHhhhhhhhHHHh----hccHHHHHHHHHhhcCC
Confidence 44444443 4557888999999888888999999888877 678888889888876543 33477888888888889
Q ss_pred chhHHHHHHHHhHcCCChhHHHHHH----ccCC----CCCcchHHHHHHHHHhCCChhH-HHHHHHHHHH----CCCCC-
Q 004487 107 ILIICNSLVDSYCKIRCLDLARRVF----KEMP----QKDSVSFNALITGFAKEGLNEE-AIKLFVEMQH----LGFKP- 172 (749)
Q Consensus 107 ~~~~~~~li~~~~~~g~~~~A~~~~----~~m~----~~~~~~~~~li~~~~~~g~~~~-A~~l~~~m~~----~g~~p- 172 (749)
|..|+|++++..++.|+++.|++.+ .+|. +|...+|..+|..+.+.+++.+ |..++.+... ..++|
T Consensus 272 nl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~ 351 (625)
T KOG4422|consen 272 NLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPI 351 (625)
T ss_pred chHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCC
Confidence 9999999998888888887776544 3332 3666777777777777766643 3334444332 11222
Q ss_pred ---ChhhHHHHHHHHhCCCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHcCCChHHHHHHHccCCCCCcchHHHHHHH
Q 004487 173 ---SDFTFAAALSAGVGLADIALGRQVHAFVVKTNFVENVFVANALLDLYSKHDCVVEARKLFGEMPEVDGVSYNVMITC 249 (749)
Q Consensus 173 ---~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~ 249 (749)
|...|...+..|.+..+.+.|.+++.......- |...|.. + ....-|.-+...
T Consensus 352 ~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N-------------~~~ig~~------~-----~~~fYyr~~~~l 407 (625)
T KOG4422|consen 352 TPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDN-------------WKFIGPD------Q-----HRNFYYRKFFDL 407 (625)
T ss_pred CCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCc-------------hhhcChH------H-----HHHHHHHHHHHH
Confidence 344566677777777777777777665432110 0000000 0 112235556677
Q ss_pred HHhcCChhHHHHHHHHHHHCCCCCCcchHHHHHHHHHccCChHHHHHHHHHHHHhcCCcchhHHHHHHHHHHh
Q 004487 250 YAWNEQYKESLKLFRELQFTRFDRSQFPFSTLLSVVANKLDLQIGRQIHTQTIVTTAISEVKVANSLVDMYAK 322 (749)
Q Consensus 250 ~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~ 322 (749)
.++....+.-+..|+.|.-.-.-|+..+...+++|....+.++...+++..++..|.........-++...++
T Consensus 408 icq~es~~~~~~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~ 480 (625)
T KOG4422|consen 408 ICQMESIDVTLKWYEDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLAR 480 (625)
T ss_pred HHHHHHHHHHHHHHHHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhc
Confidence 7888888889999999988888899999999999999999999999999999888865555444444444443
No 30
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.67 E-value=2.1e-11 Score=129.27 Aligned_cols=587 Identities=14% Similarity=0.073 Sum_probs=381.3
Q ss_pred HHcCCChHHHHHHHhcCCC---CCcchHHHHHHHHHcCCChhHHHHHHHHhHhcCCCCCCcchHHHHHHhcCCCCChHHH
Q 004487 16 YVKSGNLATARELFNSMVD---RTAVSWTILIGGYSQKNQFREAFKLFVDMRTDGGSDPDYVTFATLLSGCSEPDTANEL 92 (749)
Q Consensus 16 ~~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~g~~p~~~~~~~ll~~~~~~~~~~~a 92 (749)
+...|++++|.+++.++.. ++..+|.+|-..|-+.|+.++++..+-..-- -.+-|...|..+-.-....|.+..|
T Consensus 149 lfarg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAH--L~p~d~e~W~~ladls~~~~~i~qA 226 (895)
T KOG2076|consen 149 LFARGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAH--LNPKDYELWKRLADLSEQLGNINQA 226 (895)
T ss_pred HHHhCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHh--cCCCChHHHHHHHHHHHhcccHHHH
Confidence 3345999999999999855 3567899999999999999999987655432 3455667888888888899999999
Q ss_pred HHHHHHHHHhCCCCchhHHHHHHHHhHcCCChhHHHHHHccCCCCCc-c-------hHHHHHHHHHhCCChhHHHHHHHH
Q 004487 93 IQVHADIIKFGYNSILIICNSLVDSYCKIRCLDLARRVFKEMPQKDS-V-------SFNALITGFAKEGLNEEAIKLFVE 164 (749)
Q Consensus 93 ~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-~-------~~~~li~~~~~~g~~~~A~~l~~~ 164 (749)
.-.+..+++.... +....---+..|-+.|+...|..-|.++-+.+. + .--.++..+...++-+.|++.++.
T Consensus 227 ~~cy~rAI~~~p~-n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~ 305 (895)
T KOG2076|consen 227 RYCYSRAIQANPS-NWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEG 305 (895)
T ss_pred HHHHHHHHhcCCc-chHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 9999999998743 444444557788999999999888877765322 1 122345667777777999998888
Q ss_pred HHHCC-CCCChhhHHHHHHHHhCCCChHHHHHHHHHHHH---------------------------cCCCCChhH-HHHH
Q 004487 165 MQHLG-FKPSDFTFAAALSAGVGLADIALGRQVHAFVVK---------------------------TNFVENVFV-ANAL 215 (749)
Q Consensus 165 m~~~g-~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~---------------------------~g~~~~~~~-~~~L 215 (749)
....+ -..+..+++.++..+.+...++.+......... .+..++..+ ...+
T Consensus 306 ~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~i 385 (895)
T KOG2076|consen 306 ALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIRLMI 385 (895)
T ss_pred HHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhHhHhh
Confidence 76632 233445566666666666666666555444443 112233333 2222
Q ss_pred HHHHHcCCChHHHHHHHccCC----CCCcchHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCcchHHHHHHHHHccCCh
Q 004487 216 LDLYSKHDCVVEARKLFGEMP----EVDGVSYNVMITCYAWNEQYKESLKLFRELQFTRFDRSQFPFSTLLSVVANKLDL 291 (749)
Q Consensus 216 i~~y~~~g~~~~A~~~f~~~~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~ 291 (749)
.-.-.+.+...++..-|-... .-++..|.-+..+|.+.|.+.+|+.+|..+......-+.+.|-.+-.++-..+..
T Consensus 386 cL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~ 465 (895)
T KOG2076|consen 386 CLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEY 465 (895)
T ss_pred hhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhH
Confidence 222233444444444442222 2345578888899999999999999999998877667777888889999999999
Q ss_pred HHHHHHHHHHHHhcCCcchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCCccc-----H-------HHHHHHHHhCCChhH
Q 004487 292 QIGRQIHTQTIVTTAISEVKVANSLVDMYAKCGRFEEAKEIFANLSHISTVP-----W-------TAMISAYVQKGNLEE 359 (749)
Q Consensus 292 ~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~-----~-------~~li~~~~~~g~~~~ 359 (749)
+.|.+.+..++... +.+..+--.|...|-+.|+.++|.+.+..+..+|... | ......+.+.|+.++
T Consensus 466 e~A~e~y~kvl~~~-p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk~E~ 544 (895)
T KOG2076|consen 466 EEAIEFYEKVLILA-PDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVGKREE 544 (895)
T ss_pred HHHHHHHHHHHhcC-CCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhhhHHH
Confidence 99999999998864 4455666788889999999999999999987666322 1 223456777888877
Q ss_pred HHHHHHHHHHCC-----CCc-----------------CHHhHHHHHHHhcccCcHHHHHHH------HHHHHHhCCCCch
Q 004487 360 ALNLFIEMCRAN-----ISA-----------------DQATFASILRASAELASLSLGKQL------HSFVIRSGFMSNV 411 (749)
Q Consensus 360 A~~l~~~m~~~g-----~~p-----------------~~~t~~~ll~~~~~~~~~~~a~~~------~~~~~~~~~~~~~ 411 (749)
=+.+-.+|.... +-| ...+...+..+-.+.++....+.- .......|+..+.
T Consensus 545 fi~t~~~Lv~~~~~~~~~f~~~~k~r~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~d~~~~~~~e~~~Lsidd 624 (895)
T KOG2076|consen 545 FINTASTLVDDFLKKRYIFPRNKKKRRRAIAGTTSKRYSELLKQIIRAREKATDDNVMEKALSDGTEFRAVELRGLSIDD 624 (895)
T ss_pred HHHHHHHHHHHHHHHHHhcchHHHHHHHhhccccccccchhHHHHHHHHhccCchHHhhhcccchhhhhhhhhccCcHHH
Confidence 666655554321 111 112222222232222221111111 1111112222221
Q ss_pred --hHHHHHHHHHHhcCCHHHHHHHHhhCCCCCc---------chHHHHHHHHHhcCCHHHHHHHHHHHHHC-C--CCCCH
Q 004487 412 --FSGSALLDMYAKSGSLKDAIQTFKEMPERNI---------VSWNALISACAQNGDAQATLKSFEDMVQS-G--YQPDS 477 (749)
Q Consensus 412 --~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~---------~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g--~~p~~ 477 (749)
..+.-++...++.+++++|..+...+...++ ..-..++.+....+++..|...++.|... + ..|..
T Consensus 625 wfel~~e~i~~L~k~~r~qeAl~vv~~a~~~~~f~~~~~~~k~l~~~~l~~s~~~~d~~~a~~~lR~~i~~~~~~~~~~q 704 (895)
T KOG2076|consen 625 WFELFRELILSLAKLQRVQEALSVVFTALEAYIFFQDSEIRKELQFLGLKASLYARDPGDAFSYLRSVITQFQFYLDVYQ 704 (895)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhhhhhHH
Confidence 3455678888999999999998887764221 12345666777889999999999998874 1 13333
Q ss_pred H-HHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHH--HHHHHHHcCCHHHHHHHHHhC-CCCCCHHhHHHHHH
Q 004487 478 V-SLLSVLSACSHCGLIEEGLQYFNSMTQKYKLRPKKEHYAS--MVDILCRSGCFDEAEKLMAQM-PFEPDEIMWSSVIN 553 (749)
Q Consensus 478 ~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~--li~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~ll~ 553 (749)
. .|+..++.....|+-.--.+++.... ...|+-.+.-+ ....+..++.+.-|+..+-+. ...||....+.+++
T Consensus 705 ~~l~n~~~s~~~~~~q~v~~~R~~~~~~---~~~~~~~~~l~~i~gh~~~~~~s~~~Al~~y~ra~~~~pd~Pl~nl~lg 781 (895)
T KOG2076|consen 705 LNLWNLDFSYFSKYGQRVCYLRLIMRLL---VKNKDDTPPLALIYGHNLFVNASFKHALQEYMRAFRQNPDSPLINLCLG 781 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh---ccCccCCcceeeeechhHhhccchHHHHHHHHHHHHhCCCCcHHHHHHH
Confidence 3 34445555555554333333333322 22232212222 234456678888888766554 44466444444433
Q ss_pred H-H----------HhcCCHHHHHHHHHHHhcCCCCC--CchhHHHHHHHHHHcCCchhHHHHHHHHHhCC
Q 004487 554 S-C----------RIHKNLEFAKKAADQLFKMEKLR--DAAPYVAMSNIYAVAGQWESVSQVKKAMRERG 610 (749)
Q Consensus 554 ~-~----------~~~g~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 610 (749)
. + .+|-.+-.|..++++..++.. . .-.++..++.+|-..|-..-|..++++..+-.
T Consensus 782 lafih~a~qr~v~~Rh~~i~qG~afL~RY~~lR~-~~~~QEa~YNigRayh~~gl~~LA~~YYekvL~~~ 850 (895)
T KOG2076|consen 782 LAFIHLALQRRVSNRHAQIAQGFAFLKRYKELRR-CEEKQEAFYNIGRAYHQIGLVHLAVSYYEKVLEVS 850 (895)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhc-cHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhCCC
Confidence 2 2 233356777888888877765 4 56788899999999999999999999987643
No 31
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.65 E-value=3.2e-13 Score=141.78 Aligned_cols=449 Identities=13% Similarity=0.013 Sum_probs=250.8
Q ss_pred CCcchHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHhCCCChHHHHHHHHHHHHcCCCCChhHHHHHH
Q 004487 137 KDSVSFNALITGFAKEGLNEEAIKLFVEMQHLGFKPSDFTFAAALSAGVGLADIALGRQVHAFVVKTNFVENVFVANALL 216 (749)
Q Consensus 137 ~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li 216 (749)
++..+|.+++.+-.-+|+.+.|..++.+|++.|++.+..-|..+|-+ .++......+..-|...|+.|+..|+..-+
T Consensus 202 ~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyv 278 (1088)
T KOG4318|consen 202 PTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYV 278 (1088)
T ss_pred CChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHH
Confidence 57778999999999999999999999999999999998888888766 788888889999999999999999998877
Q ss_pred HHHHcCCChHHHHHHHccCCCCCcchHHHHHHHHHh-----cCChhHHHHHHHHHHHCCCCCCcchHHHHHHHHHccCCh
Q 004487 217 DLYSKHDCVVEARKLFGEMPEVDGVSYNVMITCYAW-----NEQYKESLKLFRELQFTRFDRSQFPFSTLLSVVANKLDL 291 (749)
Q Consensus 217 ~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~-----~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~ 291 (749)
-.+.+.|....+....+.-..-....+..+..+... .....-....+.+..-.|+......|...... ...|.-
T Consensus 279 ip~l~N~~t~~~~e~sq~~hg~tAavrsaa~rg~~a~k~l~~nl~~~v~~s~k~~fLlg~d~~~aiws~c~~l-~hQgk~ 357 (1088)
T KOG4318|consen 279 IPQLSNGQTKYGEEGSQLAHGFTAAVRSAACRGLLANKRLRQNLRKSVIGSTKKLFLLGTDILEAIWSMCEKL-RHQGKG 357 (1088)
T ss_pred HhhhcchhhhhcccccchhhhhhHHHHHHHhcccHhHHHHHHHHHHHHHHHhhHHHHhccccchHHHHHHHHH-HHcCCC
Confidence 777776553332222111100011112222222110 11111112222222222332222222222211 113333
Q ss_pred HHHHHHHHHHHHhcCC---cchhHHHHHHHHHHhcC----------------------------------CHHHHHHHHH
Q 004487 292 QIGRQIHTQTIVTTAI---SEVKVANSLVDMYAKCG----------------------------------RFEEAKEIFA 334 (749)
Q Consensus 292 ~~a~~~~~~~~~~g~~---~~~~~~~~li~~~~~~g----------------------------------~~~~A~~~~~ 334 (749)
+...++-..+..-... .++..+..++.-|.+.- +...+.+-+.
T Consensus 358 e~veqlvg~l~npt~r~s~~~V~a~~~~lrqyFrr~e~~~~~~i~~~~qgls~~l~se~tp~vsell~~lrkns~lr~lv 437 (1088)
T KOG4318|consen 358 EEVEQLVGQLLNPTLRDSGQNVDAFGALLRQYFRRIERHICSRIYYAGQGLSLNLNSEDTPRVSELLENLRKNSFLRQLV 437 (1088)
T ss_pred chHHHHHhhhcCCccccCcchHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhchhhhHHHHHHHHHhCcchHHHHHh
Confidence 3333333333222111 11222222222222111 1111111111
Q ss_pred hcC----CCCccc-----------HHHHHHHHHhCCChhHHHHHHHHHHHCCCCcCHHhHHHHHHHhcccCcHHHHHHHH
Q 004487 335 NLS----HISTVP-----------WTAMISAYVQKGNLEEALNLFIEMCRANISADQATFASILRASAELASLSLGKQLH 399 (749)
Q Consensus 335 ~~~----~~~~~~-----------~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~ 399 (749)
... .+...+ -+.++..++..-+..+++..-+..... .-| ..|..++.-|.....++.|..+.
T Consensus 438 ~Lss~Eler~he~~~~~~h~irdi~~ql~l~l~se~n~lK~l~~~ekye~~-lf~--g~ya~Li~l~~~hdkle~Al~~~ 514 (1088)
T KOG4318|consen 438 GLSSTELERSHEPWPLIAHLIRDIANQLHLTLNSEYNKLKILCDEEKYEDL-LFA--GLYALLIKLMDLHDKLEYALSFV 514 (1088)
T ss_pred hhhHHHHhcccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-Hhh--hHHHHHhhhHHHHHHHHHHHhch
Confidence 110 011112 233444444444445554333322221 111 45778888888888888888888
Q ss_pred HHHHHh--CCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCC-----CC-cchHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 004487 400 SFVIRS--GFMSNVFSGSALLDMYAKSGSLKDAIQTFKEMPE-----RN-IVSWNALISACAQNGDAQATLKSFEDMVQS 471 (749)
Q Consensus 400 ~~~~~~--~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~-----~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 471 (749)
+++... .+..|...+..+.+...+.+.+.++..++.++.+ ++ ..+.--++++.+..|+.+...++++-+...
T Consensus 515 ~e~d~~d~s~~Ld~~~m~~l~dLL~r~~~l~dl~tiL~e~ks~a~n~~~~a~~~f~~lns~a~agqqe~Lkkl~d~lvsl 594 (1088)
T KOG4318|consen 515 DEIDTRDESIHLDLPLMTSLQDLLQRLAILYDLSTILYEDKSSAENEPLVAIILFPLLNSGAPAGQQEKLKKLADILVSL 594 (1088)
T ss_pred hhhcccchhhhcccHhHHHHHHHHHHhHHHHHHHHHHhhhhHHhhCCchHHHHHHHHHhhhhhccCHHHHHHHHHHHHHh
Confidence 776543 4556777788888999999999999999888874 21 223444667777888888888888888777
Q ss_pred CCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCh-HHHHHHHH------------------HHHHcCCHHHH
Q 004487 472 GYQPDSVSLLSVLSACSHCGLIEEGLQYFNSMTQKYKLRPKK-EHYASMVD------------------ILCRSGCFDEA 532 (749)
Q Consensus 472 g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~-~~~~~li~------------------~~~~~g~~~~A 532 (749)
|+.-. .-+.....+.++...+++.++...++|.+.|.. +.+..++. .|.+.|++.+|
T Consensus 595 gl~et----gPl~~vhLrkdd~s~a~ea~e~~~qkyk~~P~~~e~lcrlv~ke~td~~qk~mDls~~iq~f~k~g~~~~a 670 (1088)
T KOG4318|consen 595 GLSET----GPLWMVHLRKDDQSAAQEAPEPEEQKYKPYPKDLEGLCRLVYKETTDSPQKTMDLSIPIQKFEKLGSCVDA 670 (1088)
T ss_pred hhhhc----ccceEEEeeccchhhhhhcchHHHHHhcCChHHHHHHHHHHHhhccccHHHHHhhcchhHHHHhcccccch
Confidence 75442 223344556778888888888887777666632 23333322 24555555555
Q ss_pred HHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHcCCchhHHHHHHHHH
Q 004487 533 EKLMAQMPFEPDEIMWSSVINSCRIHKNLEFAKKAADQLFKMEKLRDAAPYVAMSNIYAVAGQWESVSQVKKAMR 607 (749)
Q Consensus 533 ~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 607 (749)
.++.+.-+..-.. -| ..|...|.+.--+...+.+.+++. ...|...|-+.|+|+.|..++.+|.
T Consensus 671 ~di~etpG~r~r~-~R----Dr~~de~e~~~lEll~elt~~lg~------~dRLL~sy~~~g~~erA~glwnK~Q 734 (1088)
T KOG4318|consen 671 GDITETPGVRCRN-GR----DRDTDEGEIVPLELLLELTHELGK------NDRLLQSYLEEGRIERASGLWNKDQ 734 (1088)
T ss_pred hhccccCcccccC-CC----ccccccCccccHHHHHHHHhHhHH------HHHHHHHHHhhhHHHHHHhHHhhCc
Confidence 5555443211000 00 223334444333344444333333 3448889999999999999999886
No 32
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.62 E-value=2.4e-10 Score=116.69 Aligned_cols=509 Identities=11% Similarity=0.051 Sum_probs=341.3
Q ss_pred HHHHHHhHhcCCCCCCcchHHHHHHhcCCCCChHHHHHHHHHHHHhCCCCchhHHHHHHHHhHcCCChhHHHHHHccCCC
Q 004487 57 FKLFVDMRTDGGSDPDYVTFATLLSGCSEPDTANELIQVHADIIKFGYNSILIICNSLVDSYCKIRCLDLARRVFKEMPQ 136 (749)
Q Consensus 57 ~~l~~~m~~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 136 (749)
.+++++..+. ++-++..|-.. ......+.|+-++....+.- +.+.. |.-+|++...++.|.++++...+
T Consensus 366 ~RVlRKALe~--iP~sv~LWKaA----VelE~~~darilL~rAvecc-p~s~d----LwlAlarLetYenAkkvLNkaRe 434 (913)
T KOG0495|consen 366 KRVLRKALEH--IPRSVRLWKAA----VELEEPEDARILLERAVECC-PQSMD----LWLALARLETYENAKKVLNKARE 434 (913)
T ss_pred HHHHHHHHHh--CCchHHHHHHH----HhccChHHHHHHHHHHHHhc-cchHH----HHHHHHHHHHHHHHHHHHHHHHh
Confidence 3445555443 33333333332 33445555666666666553 22233 33345555667777777765543
Q ss_pred ---CCcchHHHHHHHHHhCCChhHHHHHHHH----HHHCCCCCChhhHHHHHHHHhCCCChHHHHHHHHHHHHcCCCCC-
Q 004487 137 ---KDSVSFNALITGFAKEGLNEEAIKLFVE----MQHLGFKPSDFTFAAALSAGVGLADIALGRQVHAFVVKTNFVEN- 208 (749)
Q Consensus 137 ---~~~~~~~~li~~~~~~g~~~~A~~l~~~----m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~- 208 (749)
.+...|-+-...=-.+|+.+....+..+ +...|+..+...|..=..+|-..|..-.+..+...++..|.+..
T Consensus 435 ~iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed 514 (913)
T KOG0495|consen 435 IIPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEED 514 (913)
T ss_pred hCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccch
Confidence 4566676655555667777777766654 44567777777777777777777777777767666666665432
Q ss_pred -hhHHHHHHHHHHcCCChHHHHHHHccCCC---CCcchHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCcchHHHHHHH
Q 004487 209 -VFVANALLDLYSKHDCVVEARKLFGEMPE---VDGVSYNVMITCYAWNEQYKESLKLFRELQFTRFDRSQFPFSTLLSV 284 (749)
Q Consensus 209 -~~~~~~Li~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~ 284 (749)
..+|+.-.+.+.+.+.++-|+.+|....+ .+...|...+..=-..|..++-..+|++....
T Consensus 515 ~~~tw~~da~~~~k~~~~~carAVya~alqvfp~k~slWlra~~~ek~hgt~Esl~Allqkav~~--------------- 579 (913)
T KOG0495|consen 515 RKSTWLDDAQSCEKRPAIECARAVYAHALQVFPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQ--------------- 579 (913)
T ss_pred hHhHHhhhHHHHHhcchHHHHHHHHHHHHhhccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHh---------------
Confidence 34555556666666666666666655443 23334544444444445555555555554432
Q ss_pred HHccCChHHHHHHHHHHHHhcCCcchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCC---cccHHHHHHHHHhCCChhHHH
Q 004487 285 VANKLDLQIGRQIHTQTIVTTAISEVKVANSLVDMYAKCGRFEEAKEIFANLSHIS---TVPWTAMISAYVQKGNLEEAL 361 (749)
Q Consensus 285 ~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~ 361 (749)
-. -....+-....-+-..|+...|+.++...-+.+ ...|-+-+.....+.++++|.
T Consensus 580 --------------------~p-kae~lwlM~ake~w~agdv~~ar~il~~af~~~pnseeiwlaavKle~en~e~eraR 638 (913)
T KOG0495|consen 580 --------------------CP-KAEILWLMYAKEKWKAGDVPAARVILDQAFEANPNSEEIWLAAVKLEFENDELERAR 638 (913)
T ss_pred --------------------CC-cchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHH
Confidence 21 122233333444455677777777776665433 333777777777788888888
Q ss_pred HHHHHHHHCCCCcCHHhHHHHHHHhcccCcHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCC--
Q 004487 362 NLFIEMCRANISADQATFASILRASAELASLSLGKQLHSFVIRSGFMSNVFSGSALLDMYAKSGSLKDAIQTFKEMPE-- 439 (749)
Q Consensus 362 ~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~-- 439 (749)
.+|.+... ..|+...|.--+..---++..++|.++++..++. ++.-...|-.+...+-+.++++.|.+.|..-.+
T Consensus 639 ~llakar~--~sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~-fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~c 715 (913)
T KOG0495|consen 639 DLLAKARS--ISGTERVWMKSANLERYLDNVEEALRLLEEALKS-FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKC 715 (913)
T ss_pred HHHHHHhc--cCCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh-CCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccC
Confidence 88877765 4566666655555555567778888887776664 333445677777888888999999988876653
Q ss_pred C-CcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHH
Q 004487 440 R-NIVSWNALISACAQNGDAQATLKSFEDMVQSGYQPDSVSLLSVLSACSHCGLIEEGLQYFNSMTQKYKLRPKKEHYAS 518 (749)
Q Consensus 440 ~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~ 518 (749)
| .+..|-.|...--+.|+.-.|..++++..-.+ +-|...|...+..=.+.|+.+.|..+..+..++ .+.+...|.-
T Consensus 716 P~~ipLWllLakleEk~~~~~rAR~ildrarlkN-Pk~~~lwle~Ir~ElR~gn~~~a~~lmakALQe--cp~sg~LWaE 792 (913)
T KOG0495|consen 716 PNSIPLWLLLAKLEEKDGQLVRARSILDRARLKN-PKNALLWLESIRMELRAGNKEQAELLMAKALQE--CPSSGLLWAE 792 (913)
T ss_pred CCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcC-CCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCccchhHHH
Confidence 3 45578888777778889999999999988753 345668888999999999999999998888875 5566778888
Q ss_pred HHHHHHHcCCHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHcCCchh
Q 004487 519 MVDILCRSGCFDEAEKLMAQMPFEPDEIMWSSVINSCRIHKNLEFAKKAADQLFKMEKLRDAAPYVAMSNIYAVAGQWES 598 (749)
Q Consensus 519 li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 598 (749)
-|.+..+.++-..+.+.+++.. .|+.+.-+....+....+++.|..-|+++++.+| ++..+|..+-..+.+.|.-++
T Consensus 793 aI~le~~~~rkTks~DALkkce--~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~-d~GD~wa~fykfel~hG~eed 869 (913)
T KOG0495|consen 793 AIWLEPRPQRKTKSIDALKKCE--HDPHVLLAIAKLFWSEKKIEKAREWFERAVKKDP-DNGDAWAWFYKFELRHGTEED 869 (913)
T ss_pred HHHhccCcccchHHHHHHHhcc--CCchhHHHHHHHHHHHHHHHHHHHHHHHHHccCC-ccchHHHHHHHHHHHhCCHHH
Confidence 8888888888888888888764 3555666677778888899999999999999999 999999999999999999999
Q ss_pred HHHHHHHHHhCCCccCCceeEEEeC
Q 004487 599 VSQVKKAMRERGVRKVTAYSWVELK 623 (749)
Q Consensus 599 a~~~~~~m~~~g~~~~~~~s~~~~~ 623 (749)
-.+++++-.... |.-|..|..+.
T Consensus 870 ~kev~~~c~~~E--P~hG~~W~avS 892 (913)
T KOG0495|consen 870 QKEVLKKCETAE--PTHGELWQAVS 892 (913)
T ss_pred HHHHHHHHhccC--CCCCcHHHHHh
Confidence 999998876553 44566665443
No 33
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.61 E-value=2.5e-12 Score=125.00 Aligned_cols=270 Identities=13% Similarity=0.111 Sum_probs=197.8
Q ss_pred HHHhcCCHHHHHHHHHhcCCCCcccH----HHHH-HHHHhCC-ChhHHHHHHHHHHHCCCCcCHHhHHHHHHHhcccCcH
Q 004487 319 MYAKCGRFEEAKEIFANLSHISTVPW----TAMI-SAYVQKG-NLEEALNLFIEMCRANISADQATFASILRASAELASL 392 (749)
Q Consensus 319 ~~~~~g~~~~A~~~~~~~~~~~~~~~----~~li-~~~~~~g-~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~ 392 (749)
-|.+.|+++.|.++++-....|..+- |.|- --|.+-| ++..|.+.-+...... +-+....+.--+.....|++
T Consensus 428 ~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~d-ryn~~a~~nkgn~~f~ngd~ 506 (840)
T KOG2003|consen 428 ELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNID-RYNAAALTNKGNIAFANGDL 506 (840)
T ss_pred HHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhccc-ccCHHHhhcCCceeeecCcH
Confidence 36788888888888887776665442 2221 1233333 4555555544433211 11222222222223446888
Q ss_pred HHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCC---CCCcchHHHHHHHHHhcCCHHHHHHHHHHHH
Q 004487 393 SLGKQLHSFVIRSGFMSNVFSGSALLDMYAKSGSLKDAIQTFKEMP---ERNIVSWNALISACAQNGDAQATLKSFEDMV 469 (749)
Q Consensus 393 ~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 469 (749)
+.|.+.+.......-.-....|| +.-.+-+.|++++|++.|-++. ..++...-.+.+.|-...+..+|++++.+..
T Consensus 507 dka~~~ykeal~ndasc~ealfn-iglt~e~~~~ldeald~f~klh~il~nn~evl~qianiye~led~aqaie~~~q~~ 585 (840)
T KOG2003|consen 507 DKAAEFYKEALNNDASCTEALFN-IGLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPAQAIELLMQAN 585 (840)
T ss_pred HHHHHHHHHHHcCchHHHHHHHH-hcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhc
Confidence 88888888887665433333343 3345678899999999997765 4566666677888888999999999998876
Q ss_pred HCCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcC-CCCChHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCCHH
Q 004487 470 QSGYQP-DSVSLLSVLSACSHCGLIEEGLQYFNSMTQKYK-LRPKKEHYASMVDILCRSGCFDEAEKLMAQM-PFEPDEI 546 (749)
Q Consensus 470 ~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~-~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~~ 546 (749)
. +.| |...+.-|...|-+.|+-.+|.+.+-.- |. ++-+.++...|..-|....-+++|+.+|++. -+.|+..
T Consensus 586 s--lip~dp~ilskl~dlydqegdksqafq~~yds---yryfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~~ 660 (840)
T KOG2003|consen 586 S--LIPNDPAILSKLADLYDQEGDKSQAFQCHYDS---YRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQS 660 (840)
T ss_pred c--cCCCCHHHHHHHHHHhhcccchhhhhhhhhhc---ccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccHH
Confidence 6 555 5557778888999999999999887543 33 3447889889999999999999999999998 6789999
Q ss_pred hHHHHHHHH-HhcCCHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHcCCc
Q 004487 547 MWSSVINSC-RIHKNLEFAKKAADQLFKMEKLRDAAPYVAMSNIYAVAGQW 596 (749)
Q Consensus 547 ~~~~ll~~~-~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 596 (749)
-|..++..| ++.|++..|..+++.....-| .|......|..++...|..
T Consensus 661 kwqlmiasc~rrsgnyqka~d~yk~~hrkfp-edldclkflvri~~dlgl~ 710 (840)
T KOG2003|consen 661 KWQLMIASCFRRSGNYQKAFDLYKDIHRKFP-EDLDCLKFLVRIAGDLGLK 710 (840)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHHhCc-cchHHHHHHHHHhccccch
Confidence 999999887 789999999999999999999 9999999999999988853
No 34
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.58 E-value=1.5e-11 Score=129.42 Aligned_cols=354 Identities=11% Similarity=-0.020 Sum_probs=196.2
Q ss_pred CCcchHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCcchHHHHHHHHHccCChHHHHHHHHHHHHhcCCcchhHHHHHH
Q 004487 238 VDGVSYNVMITCYAWNEQYKESLKLFRELQFTRFDRSQFPFSTLLSVVANKLDLQIGRQIHTQTIVTTAISEVKVANSLV 317 (749)
Q Consensus 238 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li 317 (749)
++..++.+.+..-.-+|+.+.|..++.+|++.|+..+.+-|..++-+ .++......+..-|...|+.|+..++.-.+
T Consensus 202 ~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyv 278 (1088)
T KOG4318|consen 202 PTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYV 278 (1088)
T ss_pred CChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHH
Confidence 77888888888888888888888888888888888888877777665 677777788888888888888888877776
Q ss_pred HHHHhcCCHHHHHHHHHhcCCCCcccHHHHHHHHHhCCCh-----hHHHHHHHHHHHCCCCcCHHhHHHHHHHhcccCcH
Q 004487 318 DMYAKCGRFEEAKEIFANLSHISTVPWTAMISAYVQKGNL-----EEALNLFIEMCRANISADQATFASILRASAELASL 392 (749)
Q Consensus 318 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~-----~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~ 392 (749)
-...+.|....+.+..+.-.......+..+..+...+.+. .-....+.+..-.|+......|..... ....|.-
T Consensus 279 ip~l~N~~t~~~~e~sq~~hg~tAavrsaa~rg~~a~k~l~~nl~~~v~~s~k~~fLlg~d~~~aiws~c~~-l~hQgk~ 357 (1088)
T KOG4318|consen 279 IPQLSNGQTKYGEEGSQLAHGFTAAVRSAACRGLLANKRLRQNLRKSVIGSTKKLFLLGTDILEAIWSMCEK-LRHQGKG 357 (1088)
T ss_pred HhhhcchhhhhcccccchhhhhhHHHHHHHhcccHhHHHHHHHHHHHHHHHhhHHHHhccccchHHHHHHHH-HHHcCCC
Confidence 6666655432222211110000001122222221111111 111122222222333333323322222 1224455
Q ss_pred HHHHHHHHHHHHhCCCC---chhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCcc-hHHHHHHHHHh---cC---------
Q 004487 393 SLGKQLHSFVIRSGFMS---NVFSGSALLDMYAKSGSLKDAIQTFKEMPERNIV-SWNALISACAQ---NG--------- 456 (749)
Q Consensus 393 ~~a~~~~~~~~~~~~~~---~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~-~~~~li~~~~~---~g--------- 456 (749)
+..+++...+....... ++..+..+ +.+.|.+...+... .++ .-.+... ..
T Consensus 358 e~veqlvg~l~npt~r~s~~~V~a~~~~------------lrqyFrr~e~~~~~~i~~-~~qgls~~l~se~tp~vsell 424 (1088)
T KOG4318|consen 358 EEVEQLVGQLLNPTLRDSGQNVDAFGAL------------LRQYFRRIERHICSRIYY-AGQGLSLNLNSEDTPRVSELL 424 (1088)
T ss_pred chHHHHHhhhcCCccccCcchHHHHHHH------------HHHHHHHHHhhHHHHHHH-HHHHHHhhhchhhhHHHHHHH
Confidence 55555554443321111 12222222 33334433322111 111 0011111 01
Q ss_pred ---CHHHHHHHHHH-----HHHCCCCC-------CHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHH
Q 004487 457 ---DAQATLKSFED-----MVQSGYQP-------DSVSLLSVLSACSHCGLIEEGLQYFNSMTQKYKLRPKKEHYASMVD 521 (749)
Q Consensus 457 ---~~~~A~~~~~~-----m~~~g~~p-------~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~ 521 (749)
+...+++-+.. ..+. +.| =...-+.++..|...-+..+++..-+..... - -| ..|..||+
T Consensus 425 ~~lrkns~lr~lv~Lss~Eler~-he~~~~~~h~irdi~~ql~l~l~se~n~lK~l~~~ekye~~-l-f~--g~ya~Li~ 499 (1088)
T KOG4318|consen 425 ENLRKNSFLRQLVGLSSTELERS-HEPWPLIAHLIRDIANQLHLTLNSEYNKLKILCDEEKYEDL-L-FA--GLYALLIK 499 (1088)
T ss_pred HHhCcchHHHHHhhhhHHHHhcc-cccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-H-hh--hHHHHHhh
Confidence 11111111111 1111 111 1113345555666666666666554443321 1 22 67899999
Q ss_pred HHHHcCCHHHHHHHHHhCC-----CCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHhcCCCC--CCchhHHHHHHHHHHcC
Q 004487 522 ILCRSGCFDEAEKLMAQMP-----FEPDEIMWSSVINSCRIHKNLEFAKKAADQLFKMEKL--RDAAPYVAMSNIYAVAG 594 (749)
Q Consensus 522 ~~~~~g~~~~A~~~~~~~~-----~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g 594 (749)
.+.+....++|..+.++.. +.-|..-+..+.+...+++....+..+++++.+.-.. .-..+...+.+.-+..|
T Consensus 500 l~~~hdkle~Al~~~~e~d~~d~s~~Ld~~~m~~l~dLL~r~~~l~dl~tiL~e~ks~a~n~~~~a~~~f~~lns~a~ag 579 (1088)
T KOG4318|consen 500 LMDLHDKLEYALSFVDEIDTRDESIHLDLPLMTSLQDLLQRLAILYDLSTILYEDKSSAENEPLVAIILFPLLNSGAPAG 579 (1088)
T ss_pred hHHHHHHHHHHHhchhhhcccchhhhcccHhHHHHHHHHHHhHHHHHHHHHHhhhhHHhhCCchHHHHHHHHHhhhhhcc
Confidence 9999999999999999882 3345566778888888999999999999988773320 22456667888888999
Q ss_pred CchhHHHHHHHHHhCCCcc
Q 004487 595 QWESVSQVKKAMRERGVRK 613 (749)
Q Consensus 595 ~~~~a~~~~~~m~~~g~~~ 613 (749)
.-+...++.+-+...|+.-
T Consensus 580 qqe~Lkkl~d~lvslgl~e 598 (1088)
T KOG4318|consen 580 QQEKLKKLADILVSLGLSE 598 (1088)
T ss_pred CHHHHHHHHHHHHHhhhhh
Confidence 9999999999999888865
No 35
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.53 E-value=9.2e-09 Score=105.38 Aligned_cols=416 Identities=11% Similarity=0.057 Sum_probs=297.3
Q ss_pred HHHHHHHHHHCCCCCChhhHHHHHHHHhCCCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHcCCChHHHHHHHccCCC
Q 004487 158 AIKLFVEMQHLGFKPSDFTFAAALSAGVGLADIALGRQVHAFVVKTNFVENVFVANALLDLYSKHDCVVEARKLFGEMPE 237 (749)
Q Consensus 158 A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~ 237 (749)
=.+++++.++. -|+... |=++.....+.+.|+.++...++.- +.+ ..|.-+|++..-++.|.+++....+
T Consensus 365 K~RVlRKALe~--iP~sv~---LWKaAVelE~~~darilL~rAvecc-p~s----~dLwlAlarLetYenAkkvLNkaRe 434 (913)
T KOG0495|consen 365 KKRVLRKALEH--IPRSVR---LWKAAVELEEPEDARILLERAVECC-PQS----MDLWLALARLETYENAKKVLNKARE 434 (913)
T ss_pred HHHHHHHHHHh--CCchHH---HHHHHHhccChHHHHHHHHHHHHhc-cch----HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34455555543 344332 2344555666666777777776542 222 2344556666777888888776654
Q ss_pred ---CCcchHHHHHHHHHhcCChhHHHHHHHH----HHHCCCCCCcchHHHHHHHHHccCChHHHHHHHHHHHHhcCCcc-
Q 004487 238 ---VDGVSYNVMITCYAWNEQYKESLKLFRE----LQFTRFDRSQFPFSTLLSVVANKLDLQIGRQIHTQTIVTTAISE- 309 (749)
Q Consensus 238 ---~~~~~~~~li~~~~~~g~~~~A~~~~~~----m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~- 309 (749)
.+...|.+-..-=-.+|+.+....++++ +...|+..+...|..=-.+|-..|..-.+..|...++..|+...
T Consensus 435 ~iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed 514 (913)
T KOG0495|consen 435 IIPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEED 514 (913)
T ss_pred hCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccch
Confidence 4666776666656677888777777654 56778888888888888888888888888888888888887553
Q ss_pred -hhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CCcccHHHHHHHHHhCCChhHHHHHHHHHHHCCCCcCHHhHHHHHHH
Q 004487 310 -VKVANSLVDMYAKCGRFEEAKEIFANLSH---ISTVPWTAMISAYVQKGNLEEALNLFIEMCRANISADQATFASILRA 385 (749)
Q Consensus 310 -~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~ 385 (749)
..+++.-.+.+.+.+.++-|+.+|....+ .+...|...+..--..|..++-..+|++.... .+-....+......
T Consensus 515 ~~~tw~~da~~~~k~~~~~carAVya~alqvfp~k~slWlra~~~ek~hgt~Esl~Allqkav~~-~pkae~lwlM~ake 593 (913)
T KOG0495|consen 515 RKSTWLDDAQSCEKRPAIECARAVYAHALQVFPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQ-CPKAEILWLMYAKE 593 (913)
T ss_pred hHhHHhhhHHHHHhcchHHHHHHHHHHHHhhccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHh-CCcchhHHHHHHHH
Confidence 45677777888888999999998887654 33444877777777788888888888888775 23344555555566
Q ss_pred hcccCcHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCC--CCCcchHHHHHHHHHhcCCHHHHHH
Q 004487 386 SAELASLSLGKQLHSFVIRSGFMSNVFSGSALLDMYAKSGSLKDAIQTFKEMP--ERNIVSWNALISACAQNGDAQATLK 463 (749)
Q Consensus 386 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~ 463 (749)
.-..|+...|+.++..+.+.... +..++-+-+..-....+++.|+.+|.+.. .+....|.--+....-.+..++|++
T Consensus 594 ~w~agdv~~ar~il~~af~~~pn-seeiwlaavKle~en~e~eraR~llakar~~sgTeRv~mKs~~~er~ld~~eeA~r 672 (913)
T KOG0495|consen 594 KWKAGDVPAARVILDQAFEANPN-SEEIWLAAVKLEFENDELERARDLLAKARSISGTERVWMKSANLERYLDNVEEALR 672 (913)
T ss_pred HHhcCCcHHHHHHHHHHHHhCCC-cHHHHHHHHHHhhccccHHHHHHHHHHHhccCCcchhhHHHhHHHHHhhhHHHHHH
Confidence 66678899999988888876543 67778888888888889999999998776 4666777766666677788899999
Q ss_pred HHHHHHHCCCCCCHH-HHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHhCCC-
Q 004487 464 SFEDMVQSGYQPDSV-SLLSVLSACSHCGLIEEGLQYFNSMTQKYKLRPKKEHYASMVDILCRSGCFDEAEKLMAQMPF- 541 (749)
Q Consensus 464 ~~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~- 541 (749)
++++.++ .-|+-. .|..+...+.+.++++.|...|..=.+ ..+-.+..|-.|.++=-+.|.+-.|..++++...
T Consensus 673 llEe~lk--~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k--~cP~~ipLWllLakleEk~~~~~rAR~ildrarlk 748 (913)
T KOG0495|consen 673 LLEEALK--SFPDFHKLWLMLGQIEEQMENIEMAREAYLQGTK--KCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLK 748 (913)
T ss_pred HHHHHHH--hCCchHHHHHHHhHHHHHHHHHHHHHHHHHhccc--cCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhc
Confidence 9988887 567765 666666678888888888887765442 2334556788888888888888899999988832
Q ss_pred CC-CHHhHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCchhHHHHHHHH
Q 004487 542 EP-DEIMWSSVINSCRIHKNLEFAKKAADQLFKMEKLRDAAPYVAMSNIY 590 (749)
Q Consensus 542 ~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 590 (749)
.| +...|-..+..-.++|+.+.|..+..++++--| .+...|.--+.+.
T Consensus 749 NPk~~~lwle~Ir~ElR~gn~~~a~~lmakALQecp-~sg~LWaEaI~le 797 (913)
T KOG0495|consen 749 NPKNALLWLESIRMELRAGNKEQAELLMAKALQECP-SSGLLWAEAIWLE 797 (913)
T ss_pred CCCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-ccchhHHHHHHhc
Confidence 24 678888888888888999998888887776555 4444444333333
No 36
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.51 E-value=1.7e-09 Score=115.10 Aligned_cols=516 Identities=12% Similarity=0.091 Sum_probs=277.0
Q ss_pred CChHHHHHHHHHHHHhCCCCchhHHHHHHHHhHcCCChhHHHHHHccC---CCCCcchHHHHHHHHHhCCChhHHHHHHH
Q 004487 87 DTANELIQVHADIIKFGYNSILIICNSLVDSYCKIRCLDLARRVFKEM---PQKDSVSFNALITGFAKEGLNEEAIKLFV 163 (749)
Q Consensus 87 ~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m---~~~~~~~~~~li~~~~~~g~~~~A~~l~~ 163 (749)
|+.+.|..++.++++... .+...|-.|-..|-..|+.+++...+-.. ...|..-|-.+-.-..+.|++++|.-.|.
T Consensus 153 g~~eeA~~i~~EvIkqdp-~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~i~qA~~cy~ 231 (895)
T KOG2076|consen 153 GDLEEAEEILMEVIKQDP-RNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGNINQARYCYS 231 (895)
T ss_pred CCHHHHHHHHHHHHHhCc-cchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcccHHHHHHHHH
Confidence 555555555555555542 23444555555555555555554433221 12344445555555555555555555555
Q ss_pred HHHHCCCCCChhhHHHHHHHHhCCCChHHHHHHHHHHHHcCCCCChhHHHH----HHHHHHcCCChHHHHHHHccCCC--
Q 004487 164 EMQHLGFKPSDFTFAAALSAGVGLADIALGRQVHAFVVKTNFVENVFVANA----LLDLYSKHDCVVEARKLFGEMPE-- 237 (749)
Q Consensus 164 ~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~----Li~~y~~~g~~~~A~~~f~~~~~-- 237 (749)
+..+.. +++...+--=...|-+.|+...|..-+..+.....+.|..-.-. .+..|...++-+.|.+.++....
T Consensus 232 rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s~~ 310 (895)
T KOG2076|consen 232 RAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGALSKE 310 (895)
T ss_pred HHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhc
Confidence 555431 11212222222334445555555555555544433222222222 23344445555666666655543
Q ss_pred ---CCcchHHHHHHHHHhcCChhHHHHHHHHHHHCCCC----------------------CCcchHH----HHHHHHHcc
Q 004487 238 ---VDGVSYNVMITCYAWNEQYKESLKLFRELQFTRFD----------------------RSQFPFS----TLLSVVANK 288 (749)
Q Consensus 238 ---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~----------------------p~~~t~~----~ll~~~~~~ 288 (749)
-+...++.++..|.+...++.|......+...... |+...|. .+.-+....
T Consensus 311 ~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~icL~~L 390 (895)
T KOG2076|consen 311 KDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIRLMICLVHL 390 (895)
T ss_pred cccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhHhHhhhhhcc
Confidence 23335667777777777777777777666551111 1111111 222334455
Q ss_pred CChHHHHHHHHHHHHhc--CCcchhHHHHHHHHHHhcCCHHHHHHHHHhcCC----CCcccHHHHHHHHHhCCChhHHHH
Q 004487 289 LDLQIGRQIHTQTIVTT--AISEVKVANSLVDMYAKCGRFEEAKEIFANLSH----ISTVPWTAMISAYVQKGNLEEALN 362 (749)
Q Consensus 289 ~~~~~a~~~~~~~~~~g--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~g~~~~A~~ 362 (749)
...+....+.....+.. ..-++..+.-+.++|...|++.+|.++|..+.. .+...|-.+..+|...|.+++|++
T Consensus 391 ~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~A~e 470 (895)
T KOG2076|consen 391 KERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYEEAIE 470 (895)
T ss_pred cccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHHHHHH
Confidence 56666666666666666 344567778888888888888888888887753 344558888888888888888888
Q ss_pred HHHHHHHCCCCcCH-HhHHHHHHHhcccCcHHHHHHHHHHHH--------HhCCCCchhHHHHHHHHHHhcCCHHHHHHH
Q 004487 363 LFIEMCRANISADQ-ATFASILRASAELASLSLGKQLHSFVI--------RSGFMSNVFSGSALLDMYAKSGSLKDAIQT 433 (749)
Q Consensus 363 l~~~m~~~g~~p~~-~t~~~ll~~~~~~~~~~~a~~~~~~~~--------~~~~~~~~~~~~~li~~y~~~g~~~~A~~~ 433 (749)
.|...... .|+. ..-.+|-..+.+.|+.++|.+.+..+. ..+..|+....--..+.|.+.|+.++=..+
T Consensus 471 ~y~kvl~~--~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk~E~fi~t 548 (895)
T KOG2076|consen 471 FYEKVLIL--APDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVGKREEFINT 548 (895)
T ss_pred HHHHHHhc--CCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 88887763 4433 233344445567788888877776633 234455555555666777777776653333
Q ss_pred HhhCCC--------------------------CCcchHHHHHHHHHhcCCHHHHHH------HHHHHHHCCCCCCHH--H
Q 004487 434 FKEMPE--------------------------RNIVSWNALISACAQNGDAQATLK------SFEDMVQSGYQPDSV--S 479 (749)
Q Consensus 434 ~~~~~~--------------------------~~~~~~~~li~~~~~~g~~~~A~~------~~~~m~~~g~~p~~~--t 479 (749)
-..|.. .....--.++.+-.+.++.....+ .+.--...|+..+.. .
T Consensus 549 ~~~Lv~~~~~~~~~f~~~~k~r~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~d~~~~~~~e~~~Lsiddwfel 628 (895)
T KOG2076|consen 549 ASTLVDDFLKKRYIFPRNKKKRRRAIAGTTSKRYSELLKQIIRAREKATDDNVMEKALSDGTEFRAVELRGLSIDDWFEL 628 (895)
T ss_pred HHHHHHHHHHHHHhcchHHHHHHHhhccccccccchhHHHHHHHHhccCchHHhhhcccchhhhhhhhhccCcHHHHHHH
Confidence 222220 011111122222222222111111 111111223333332 4
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChH----HHHHHHHHHHHcCCHHHHHHHHHhC----CC--CC-CHHhH
Q 004487 480 LLSVLSACSHCGLIEEGLQYFNSMTQKYKLRPKKE----HYASMVDILCRSGCFDEAEKLMAQM----PF--EP-DEIMW 548 (749)
Q Consensus 480 ~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~----~~~~li~~~~~~g~~~~A~~~~~~~----~~--~p-~~~~~ 548 (749)
|.-++.+.++.+.+++|..+...+...+-+..+.. .-.+++.+....+++.+|.+.++.| ++ .| -...|
T Consensus 629 ~~e~i~~L~k~~r~qeAl~vv~~a~~~~~f~~~~~~~k~l~~~~l~~s~~~~d~~~a~~~lR~~i~~~~~~~~~~q~~l~ 708 (895)
T KOG2076|consen 629 FRELILSLAKLQRVQEALSVVFTALEAYIFFQDSEIRKELQFLGLKASLYARDPGDAFSYLRSVITQFQFYLDVYQLNLW 708 (895)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhhhhhHHHHHH
Confidence 55566667777777888777776665433333332 2344556666777777777777766 11 22 24566
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHcCCchhHHHHHHHH
Q 004487 549 SSVINSCRIHKNLEFAKKAADQLFKMEKLRDAAPYVAMSNIYAVAGQWESVSQVKKAM 606 (749)
Q Consensus 549 ~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 606 (749)
+...+...++++-..-.+.+..+....|..++..+..-+......+.|..|...+-..
T Consensus 709 n~~~s~~~~~~q~v~~~R~~~~~~~~~~~~~~~l~~i~gh~~~~~~s~~~Al~~y~ra 766 (895)
T KOG2076|consen 709 NLDFSYFSKYGQRVCYLRLIMRLLVKNKDDTPPLALIYGHNLFVNASFKHALQEYMRA 766 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCccCCcceeeeechhHhhccchHHHHHHHHHH
Confidence 6656666666655555555555555555233555556666667777777777755544
No 37
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.48 E-value=1.4e-13 Score=137.91 Aligned_cols=253 Identities=13% Similarity=0.178 Sum_probs=112.5
Q ss_pred HHHHhCCChhHHHHHHHHHHHCCCCcCHHhHHHHHH-HhcccCcHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCH
Q 004487 349 SAYVQKGNLEEALNLFIEMCRANISADQATFASILR-ASAELASLSLGKQLHSFVIRSGFMSNVFSGSALLDMYAKSGSL 427 (749)
Q Consensus 349 ~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~-~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~ 427 (749)
..+.+.|++++|++++++.......|+...|-.++. .+...++.+.|.+.+..+...+.. ++..+..++.. ...+++
T Consensus 16 ~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~~~~ 93 (280)
T PF13429_consen 16 RLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQDGDP 93 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc-cccccc
Confidence 344455555555555544333221333333333222 333455566666666666554432 44456666666 678888
Q ss_pred HHHHHHHhhCC--CCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHhccCCHHHHHHHHHHhH
Q 004487 428 KDAIQTFKEMP--ERNIVSWNALISACAQNGDAQATLKSFEDMVQSG-YQPDSVSLLSVLSACSHCGLIEEGLQYFNSMT 504 (749)
Q Consensus 428 ~~A~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~ 504 (749)
++|.+++...- .++...+..++..+.+.++++++.++++++.... .+++...|..+...+.+.|+.++|.+.++...
T Consensus 94 ~~A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al 173 (280)
T PF13429_consen 94 EEALKLAEKAYERDGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKAL 173 (280)
T ss_dssp ------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred cccccccccccccccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 88888887664 3566778888888999999999999999987643 34566677788888999999999999999998
Q ss_pred HhcCCCCC-hHHHHHHHHHHHHcCCHHHHHHHHHhC--CCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCch
Q 004487 505 QKYKLRPK-KEHYASMVDILCRSGCFDEAEKLMAQM--PFEPDEIMWSSVINSCRIHKNLEFAKKAADQLFKMEKLRDAA 581 (749)
Q Consensus 505 ~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 581 (749)
+. .|+ ......++..+...|+.+++.++++.. ....|+..|..+..++...|+.++|...++++.+..| .|+.
T Consensus 174 ~~---~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p-~d~~ 249 (280)
T PF13429_consen 174 EL---DPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNP-DDPL 249 (280)
T ss_dssp HH----TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHST-T-HH
T ss_pred Hc---CCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhccccccccccccccccccccc-cccc
Confidence 54 564 777888999999999999988888776 2234667889999999999999999999999999999 9999
Q ss_pred hHHHHHHHHHHcCCchhHHHHHHHHH
Q 004487 582 PYVAMSNIYAVAGQWESVSQVKKAMR 607 (749)
Q Consensus 582 ~~~~l~~~~~~~g~~~~a~~~~~~m~ 607 (749)
....+++++...|+.++|.+++.+.-
T Consensus 250 ~~~~~a~~l~~~g~~~~A~~~~~~~~ 275 (280)
T PF13429_consen 250 WLLAYADALEQAGRKDEALRLRRQAL 275 (280)
T ss_dssp HHHHHHHHHT----------------
T ss_pred cccccccccccccccccccccccccc
Confidence 99999999999999999999988764
No 38
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.43 E-value=9.4e-10 Score=108.84 Aligned_cols=212 Identities=12% Similarity=0.148 Sum_probs=168.2
Q ss_pred cCcHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCC---CCCcchHHHHHHHHHhcCCHHHHHHHH
Q 004487 389 LASLSLGKQLHSFVIRSGFMSNVFSGSALLDMYAKSGSLKDAIQTFKEMP---ERNIVSWNALISACAQNGDAQATLKSF 465 (749)
Q Consensus 389 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~ 465 (749)
.|+.-.+.+-++.+++....+. ..|--+..+|....+.++-.+.|+... ..|..+|..-...+.-.+++++|..=|
T Consensus 339 ~g~~~~a~~d~~~~I~l~~~~~-~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~aDF 417 (606)
T KOG0547|consen 339 KGDSLGAQEDFDAAIKLDPAFN-SLYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIADF 417 (606)
T ss_pred cCCchhhhhhHHHHHhcCcccc-hHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHHHH
Confidence 3566666677777766553332 225566678889999999999998776 345667777666667778899999999
Q ss_pred HHHHHCCCCCCHH-HHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC
Q 004487 466 EDMVQSGYQPDSV-SLLSVLSACSHCGLIEEGLQYFNSMTQKYKLRPKKEHYASMVDILCRSGCFDEAEKLMAQM-PFEP 543 (749)
Q Consensus 466 ~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p 543 (749)
++.++ +.|+.+ .|..+-.+.-+.+.++++...|++..++ ++--++.|+-....+...+++++|.+.|+.. ..+|
T Consensus 418 ~Kai~--L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk--FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~ 493 (606)
T KOG0547|consen 418 QKAIS--LDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKK--FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEP 493 (606)
T ss_pred HHHhh--cChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhcc
Confidence 99988 677654 7888888888899999999999999875 4556788999999999999999999999887 4444
Q ss_pred C---------HHhHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHcCCchhHHHHHHHHH
Q 004487 544 D---------EIMWSSVINSCRIHKNLEFAKKAADQLFKMEKLRDAAPYVAMSNIYAVAGQWESVSQVKKAMR 607 (749)
Q Consensus 544 ~---------~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 607 (749)
+ +.+-.+++-. +-.+|+..|+.+++++++++| ....+|..|+.+-.+.|+.++|.++|++..
T Consensus 494 ~~~~~~v~~~plV~Ka~l~~-qwk~d~~~a~~Ll~KA~e~Dp-kce~A~~tlaq~~lQ~~~i~eAielFEksa 564 (606)
T KOG0547|consen 494 REHLIIVNAAPLVHKALLVL-QWKEDINQAENLLRKAIELDP-KCEQAYETLAQFELQRGKIDEAIELFEKSA 564 (606)
T ss_pred ccccccccchhhhhhhHhhh-chhhhHHHHHHHHHHHHccCc-hHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 4 2333333333 344899999999999999999 999999999999999999999999999753
No 39
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.42 E-value=2.3e-08 Score=98.67 Aligned_cols=480 Identities=11% Similarity=0.079 Sum_probs=333.9
Q ss_pred cCCChhHHHHHHccCCC---CCcchHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHhCCCChHHHHHH
Q 004487 120 KIRCLDLARRVFKEMPQ---KDSVSFNALITGFAKEGLNEEAIKLFVEMQHLGFKPSDFTFAAALSAGVGLADIALGRQV 196 (749)
Q Consensus 120 ~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~ 196 (749)
..+++..|+++|++... ++...|--.+..=.++.....|..++++....=.+.|..-|- -+..=-..|+...|+++
T Consensus 85 sq~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWyK-Y~ymEE~LgNi~gaRqi 163 (677)
T KOG1915|consen 85 SQKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWYK-YIYMEEMLGNIAGARQI 163 (677)
T ss_pred hHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHHH-HHHHHHHhcccHHHHHH
Confidence 34667778888877664 456667777777778888888888887776532222332221 22222345778888888
Q ss_pred HHHHHHcCCCCChhHHHHHHHHHHcCCChHHHHHHHccCC--CCCcchHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC
Q 004487 197 HAFVVKTNFVENVFVANALLDLYSKHDCVVEARKLFGEMP--EVDGVSYNVMITCYAWNEQYKESLKLFRELQFTRFDRS 274 (749)
Q Consensus 197 ~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~ 274 (749)
|..... ..|+...|++.|++=.+-..++.|+.++++.. .|++.+|--....=.++|+...|..+|...... -.|
T Consensus 164 ferW~~--w~P~eqaW~sfI~fElRykeieraR~IYerfV~~HP~v~~wikyarFE~k~g~~~~aR~VyerAie~--~~~ 239 (677)
T KOG1915|consen 164 FERWME--WEPDEQAWLSFIKFELRYKEIERARSIYERFVLVHPKVSNWIKYARFEEKHGNVALARSVYERAIEF--LGD 239 (677)
T ss_pred HHHHHc--CCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHheecccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH--hhh
Confidence 887764 46788888888888888888888888887754 478888877777777888888888777766432 112
Q ss_pred cchHHHHHHHH----HccCChHHHHHHHHHHHHhcCCc-chhHHHHHHHHHHhcCCHHHHHHHH--------HhcCC---
Q 004487 275 QFPFSTLLSVV----ANKLDLQIGRQIHTQTIVTTAIS-EVKVANSLVDMYAKCGRFEEAKEIF--------ANLSH--- 338 (749)
Q Consensus 275 ~~t~~~ll~~~----~~~~~~~~a~~~~~~~~~~g~~~-~~~~~~~li~~~~~~g~~~~A~~~~--------~~~~~--- 338 (749)
...-..++.++ .+....+.|+.++..+++.-... ...+|..++..--+.|+.....+.. +.+..
T Consensus 240 d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~np 319 (677)
T KOG1915|consen 240 DEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKNP 319 (677)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhCC
Confidence 22223333343 35667888999999988875333 2456666666666677755444432 22222
Q ss_pred CCcccHHHHHHHHHhCCChhHHHHHHHHHHHCCCCcCH-------HhHHHHHHHh---cccCcHHHHHHHHHHHHHhCCC
Q 004487 339 ISTVPWTAMISAYVQKGNLEEALNLFIEMCRANISADQ-------ATFASILRAS---AELASLSLGKQLHSFVIRSGFM 408 (749)
Q Consensus 339 ~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-------~t~~~ll~~~---~~~~~~~~a~~~~~~~~~~~~~ 408 (749)
.|-.+|--.+..-...|+.+...++|+..... ++|-. ..|.-+=-+| ....+.+.+++++...++ -++
T Consensus 320 ~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~-lIP 397 (677)
T KOG1915|consen 320 YNYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLD-LIP 397 (677)
T ss_pred CCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh-hcC
Confidence 34556777777778889999999999998864 55532 1222222222 346788999999999888 455
Q ss_pred CchhHHHHHHHHHH----hcCCHHHHHHHHhhCC--CCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHH
Q 004487 409 SNVFSGSALLDMYA----KSGSLKDAIQTFKEMP--ERNIVSWNALISACAQNGDAQATLKSFEDMVQSGYQP-DSVSLL 481 (749)
Q Consensus 409 ~~~~~~~~li~~y~----~~g~~~~A~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~ 481 (749)
....++.-+--+|+ ++.++..|.+++-... -|...+|...|..-.+.++++....+|++.++ ..| |..+|.
T Consensus 398 HkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~KlFk~YIelElqL~efDRcRkLYEkfle--~~Pe~c~~W~ 475 (677)
T KOG1915|consen 398 HKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDKLFKGYIELELQLREFDRCRKLYEKFLE--FSPENCYAWS 475 (677)
T ss_pred cccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHh--cChHhhHHHH
Confidence 66677777666665 6789999999998776 47778888889888999999999999999999 455 456887
Q ss_pred HHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCCHHhHHHHHHHHH----
Q 004487 482 SVLSACSHCGLIEEGLQYFNSMTQKYKLRPKKEHYASMVDILCRSGCFDEAEKLMAQM-PFEPDEIMWSSVINSCR---- 556 (749)
Q Consensus 482 ~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~ll~~~~---- 556 (749)
.....=...|+.+.|..+|.-..+...+......|-+.|+.=...|.++.|..++++. ...+...+|-++..--.
T Consensus 476 kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt~h~kvWisFA~fe~s~~~ 555 (677)
T KOG1915|consen 476 KYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDRTQHVKVWISFAKFEASASE 555 (677)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhcccchHHHhHHHHhccccc
Confidence 7777777899999999999988865444445567788888888999999999999998 44556668877765332
Q ss_pred -hcC-----------CHHHHHHHHHHHhc----CCCCCC-chhHHHHHHHHHHcCCchhHHHHHHHHHh
Q 004487 557 -IHK-----------NLEFAKKAADQLFK----MEKLRD-AAPYVAMSNIYAVAGQWESVSQVKKAMRE 608 (749)
Q Consensus 557 -~~g-----------~~~~a~~~~~~~~~----~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 608 (749)
+.+ ++..|..+|+++.. .+|+.. .......-+.-...|...+...+-+.|.+
T Consensus 556 ~~~~~~~~~~e~~~~~~~~AR~iferAn~~~k~~~~KeeR~~LLEaw~~~E~~~G~~~d~~~V~s~mPk 624 (677)
T KOG1915|consen 556 GQEDEDLAELEITDENIKRARKIFERANTYLKESTPKEERLMLLEAWKNMEETFGTEGDVERVQSKMPK 624 (677)
T ss_pred cccccchhhhhcchhHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCchhhHHHHHHhccH
Confidence 344 67788889988754 333111 12233445555667887788888777743
No 40
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.41 E-value=1.2e-09 Score=107.46 Aligned_cols=247 Identities=13% Similarity=0.180 Sum_probs=185.7
Q ss_pred HHhCCChhHHHHHHHHHHHCCC--CcCHHhHHHHHHHhcccCcHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHH
Q 004487 351 YVQKGNLEEALNLFIEMCRANI--SADQATFASILRASAELASLSLGKQLHSFVIRSGFMSNVFSGSALLDMYAKSGSLK 428 (749)
Q Consensus 351 ~~~~g~~~~A~~l~~~m~~~g~--~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~ 428 (749)
.-...++++|+.+|+++.+... --|..||+.++-.-.....+..--+....+- +--+.+...+.+.|+-.++.+
T Consensus 272 ~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~skLs~LA~~v~~id----KyR~ETCCiIaNYYSlr~eHE 347 (559)
T KOG1155|consen 272 SYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSKLSYLAQNVSNID----KYRPETCCIIANYYSLRSEHE 347 (559)
T ss_pred HhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHHHHHHHHHHHHhc----cCCccceeeehhHHHHHHhHH
Confidence 3345566777777777665421 1145677766654333222221111111111 123456677888999999999
Q ss_pred HHHHHHhhCCC---CCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHhH
Q 004487 429 DAIQTFKEMPE---RNIVSWNALISACAQNGDAQATLKSFEDMVQSGYQP-DSVSLLSVLSACSHCGLIEEGLQYFNSMT 504 (749)
Q Consensus 429 ~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~ 504 (749)
+|...|++..+ .....|+.|..-|....+...|++-++..++ +.| |...|-.|..+|.-.+...-|+-+|++..
T Consensus 348 KAv~YFkRALkLNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvd--i~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~ 425 (559)
T KOG1155|consen 348 KAVMYFKRALKLNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVD--INPRDYRAWYGLGQAYEIMKMHFYALYYFQKAL 425 (559)
T ss_pred HHHHHHHHHHhcCcchhHHHHHhhHHHHHhcccHHHHHHHHHHHh--cCchhHHHHhhhhHHHHHhcchHHHHHHHHHHH
Confidence 99999998874 3456899999999999999999999999998 555 66799999999999999999999999887
Q ss_pred HhcCCCC-ChHHHHHHHHHHHHcCCHHHHHHHHHhC--CCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHhc-------C
Q 004487 505 QKYKLRP-KKEHYASMVDILCRSGCFDEAEKLMAQM--PFEPDEIMWSSVINSCRIHKNLEFAKKAADQLFK-------M 574 (749)
Q Consensus 505 ~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~-------~ 574 (749)
.++| |...|.+|.+.|.+.++.++|++-|.+. .-..+...+..|...+-+.++.++|...+++.++ .
T Consensus 426 ---~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~ 502 (559)
T KOG1155|consen 426 ---ELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEI 502 (559)
T ss_pred ---hcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhccc
Confidence 4566 6789999999999999999999999988 2223457888999999999999999999999887 2
Q ss_pred CCCCCchhHHHHHHHHHHcCCchhHHHHHHHHH
Q 004487 575 EKLRDAAPYVAMSNIYAVAGQWESVSQVKKAMR 607 (749)
Q Consensus 575 ~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 607 (749)
+| ....+-.-|+.-+.+.++|++|........
T Consensus 503 ~~-~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~ 534 (559)
T KOG1155|consen 503 DD-ETIKARLFLAEYFKKMKDFDEASYYATLVL 534 (559)
T ss_pred ch-HHHHHHHHHHHHHHhhcchHHHHHHHHHHh
Confidence 33 334455568888999999999998776543
No 41
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.40 E-value=3.2e-10 Score=119.12 Aligned_cols=225 Identities=12% Similarity=0.100 Sum_probs=144.5
Q ss_pred HHHHHhcCCHHHHHHHHHhcCCC---CcccHHHHHHHHHhCCChhHHHHHHHHHHHCCCCcCHHhHHHHHHHhcccCcHH
Q 004487 317 VDMYAKCGRFEEAKEIFANLSHI---STVPWTAMISAYVQKGNLEEALNLFIEMCRANISADQATFASILRASAELASLS 393 (749)
Q Consensus 317 i~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~ 393 (749)
...+...|+.+.|...++.+.+. +......+...|.+.|++++|.+++..+.+.+..++. ....+-
T Consensus 160 a~l~l~~g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~-~~~~l~---------- 228 (398)
T PRK10747 160 VRIQLARNENHAARHGVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEE-HRAMLE---------- 228 (398)
T ss_pred HHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHH-HHHHHH----------
Confidence 45667777777777777776543 2333666777778888888888888888776543221 111000
Q ss_pred HHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCC---CCCcchHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004487 394 LGKQLHSFVIRSGFMSNVFSGSALLDMYAKSGSLKDAIQTFKEMP---ERNIVSWNALISACAQNGDAQATLKSFEDMVQ 470 (749)
Q Consensus 394 ~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 470 (749)
...+..++....+..+.+...++++.++ ..++.....+..++...|+.++|.+++++..+
T Consensus 229 -----------------~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~ 291 (398)
T PRK10747 229 -----------------QQAWIGLMDQAMADQGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLK 291 (398)
T ss_pred -----------------HHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 0011222222233344555556666655 24566677777778888888888888877776
Q ss_pred CCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCCHHhHH
Q 004487 471 SGYQPDSVSLLSVLSACSHCGLIEEGLQYFNSMTQKYKLRPKKEHYASMVDILCRSGCFDEAEKLMAQM-PFEPDEIMWS 549 (749)
Q Consensus 471 ~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~ 549 (749)
.+||.... ++.+....++.+++++..+...+++ +-|...+.++..++.+.|++++|.+.|++. ...|+...+.
T Consensus 292 --~~~~~~l~--~l~~~l~~~~~~~al~~~e~~lk~~--P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~~~~~ 365 (398)
T PRK10747 292 --RQYDERLV--LLIPRLKTNNPEQLEKVLRQQIKQH--GDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDAYDYA 365 (398)
T ss_pred --cCCCHHHH--HHHhhccCCChHHHHHHHHHHHhhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHH
Confidence 34444211 2333344577888888887777542 234556677788888888888888888777 6678877777
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhcCC
Q 004487 550 SVINSCRIHKNLEFAKKAADQLFKME 575 (749)
Q Consensus 550 ~ll~~~~~~g~~~~a~~~~~~~~~~~ 575 (749)
.|...+...|+.++|...+++.+.+-
T Consensus 366 ~La~~~~~~g~~~~A~~~~~~~l~~~ 391 (398)
T PRK10747 366 WLADALDRLHKPEEAAAMRRDGLMLT 391 (398)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence 78888888888888888888876643
No 42
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.40 E-value=4.9e-11 Score=122.71 Aligned_cols=160 Identities=13% Similarity=0.178 Sum_probs=88.7
Q ss_pred CcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHH
Q 004487 441 NIVSWNALISACAQNGDAQATLKSFEDMVQSGYQP-DSVSLLSVLSACSHCGLIEEGLQYFNSMTQKYKLRPKKEHYASM 519 (749)
Q Consensus 441 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l 519 (749)
.+.+|-++.+.|.-+++.+.|++.|++.++ +.| ...+|+.+..-+.....+|.|...|+... ..++.||+++
T Consensus 420 sPesWca~GNcfSLQkdh~~Aik~f~RAiQ--ldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al-----~~~~rhYnAw 492 (638)
T KOG1126|consen 420 SPESWCALGNCFSLQKDHDTAIKCFKRAIQ--LDPRFAYAYTLLGHESIATEEFDKAMKSFRKAL-----GVDPRHYNAW 492 (638)
T ss_pred CcHHHHHhcchhhhhhHHHHHHHHHHHhhc--cCCccchhhhhcCChhhhhHHHHhHHHHHHhhh-----cCCchhhHHH
Confidence 345666666666666666666666666555 444 23355555555555555666666654332 3444555543
Q ss_pred ---HHHHHHcCCHHHHHHHHHhC-CCCCC-HHhHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHcC
Q 004487 520 ---VDILCRSGCFDEAEKLMAQM-PFEPD-EIMWSSVINSCRIHKNLEFAKKAADQLFKMEKLRDAAPYVAMSNIYAVAG 594 (749)
Q Consensus 520 ---i~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 594 (749)
.-.|.+.++++.|+-.|+++ .+.|. .++.-.+...+.+.|+.|+|++++++++.++| .|+-.-+..+.++...+
T Consensus 493 YGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~-kn~l~~~~~~~il~~~~ 571 (638)
T KOG1126|consen 493 YGLGTVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDP-KNPLCKYHRASILFSLG 571 (638)
T ss_pred HhhhhheeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCC-CCchhHHHHHHHHHhhc
Confidence 23455666666666666555 45553 33334444445555666666666666666666 55555555566666666
Q ss_pred CchhHHHHHHHHHh
Q 004487 595 QWESVSQVKKAMRE 608 (749)
Q Consensus 595 ~~~~a~~~~~~m~~ 608 (749)
++++|.+.++++++
T Consensus 572 ~~~eal~~LEeLk~ 585 (638)
T KOG1126|consen 572 RYVEALQELEELKE 585 (638)
T ss_pred chHHHHHHHHHHHH
Confidence 66666666666554
No 43
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.39 E-value=1.9e-07 Score=95.89 Aligned_cols=444 Identities=13% Similarity=0.169 Sum_probs=222.0
Q ss_pred chhHHHHHHHHcCCChHHHHHHHhcCCCC-----CcchHHHHHHHHHcCCChhHHHHHHHHhHhcCCCCCCcchHHHHHH
Q 004487 7 VSTNMLISGYVKSGNLATARELFNSMVDR-----TAVSWTILIGGYSQKNQFREAFKLFVDMRTDGGSDPDYVTFATLLS 81 (749)
Q Consensus 7 ~~~~~ll~~~~~~g~~~~A~~~f~~~~~~-----~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~g~~p~~~~~~~ll~ 81 (749)
.+|-..+..+.++|++..-+..|++.... -...|...+.-....|-++-++.+|++..+- .|. .-.--+.
T Consensus 103 RIwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~---~P~--~~eeyie 177 (835)
T KOG2047|consen 103 RIWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKV---APE--AREEYIE 177 (835)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhc---CHH--HHHHHHH
Confidence 34555566666677777777777654221 2224666666666666666677777766542 222 2344445
Q ss_pred hcCCCCChHHHHHHHHHHHHhC------CCCchhHHHHHHHHhHcCCC---hhHHHHHHccCCC--CCc--chHHHHHHH
Q 004487 82 GCSEPDTANELIQVHADIIKFG------YNSILIICNSLVDSYCKIRC---LDLARRVFKEMPQ--KDS--VSFNALITG 148 (749)
Q Consensus 82 ~~~~~~~~~~a~~~~~~~~~~g------~~~~~~~~~~li~~~~~~g~---~~~A~~~~~~m~~--~~~--~~~~~li~~ 148 (749)
.+...+++++|.+.++.++... .+.+-..|+-+-+..++.-+ --....+++.+.. +|. ..|++|.+-
T Consensus 178 ~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~rftDq~g~Lw~SLAdY 257 (835)
T KOG2047|consen 178 YLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRRFTDQLGFLWCSLADY 257 (835)
T ss_pred HHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcccCcHHHHHHHHHHHHH
Confidence 5556666777666666655321 13344455555555544322 2223344444443 232 357777777
Q ss_pred HHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHhCCCChHHHHHHHHHHH-HcCCCCChhHHHHHHHHHHcCCChHH
Q 004487 149 FAKEGLNEEAIKLFVEMQHLGFKPSDFTFAAALSAGVGLADIALGRQVHAFVV-KTNFVENVFVANALLDLYSKHDCVVE 227 (749)
Q Consensus 149 ~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~-~~g~~~~~~~~~~Li~~y~~~g~~~~ 227 (749)
|.+.|.+++|.++|++-.+. ..+...|+.+.++|+.......+..+- ... +.+-+.+.. +++-
T Consensus 258 YIr~g~~ekarDvyeeai~~--v~tvrDFt~ifd~Ya~FEE~~~~~~me-~a~~~~~n~ed~~-------------dl~~ 321 (835)
T KOG2047|consen 258 YIRSGLFEKARDVYEEAIQT--VMTVRDFTQIFDAYAQFEESCVAAKME-LADEESGNEEDDV-------------DLEL 321 (835)
T ss_pred HHHhhhhHHHHHHHHHHHHh--heehhhHHHHHHHHHHHHHHHHHHHHh-hhhhcccChhhhh-------------hHHH
Confidence 77777777777777765553 223344555555555433222211111 000 011111111 1111
Q ss_pred HHHHHccCCC---------------CCcchHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCcchHHHHHHHHHccCChH
Q 004487 228 ARKLFGEMPE---------------VDGVSYNVMITCYAWNEQYKESLKLFRELQFTRFDRSQFPFSTLLSVVANKLDLQ 292 (749)
Q Consensus 228 A~~~f~~~~~---------------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~ 292 (749)
...-|+.+.. .++..|..-+. ...|+..+-...|.+..+. +.|...
T Consensus 322 ~~a~~e~lm~rr~~~lNsVlLRQn~~nV~eW~kRV~--l~e~~~~~~i~tyteAv~~-vdP~ka---------------- 382 (835)
T KOG2047|consen 322 HMARFESLMNRRPLLLNSVLLRQNPHNVEEWHKRVK--LYEGNAAEQINTYTEAVKT-VDPKKA---------------- 382 (835)
T ss_pred HHHHHHHHHhccchHHHHHHHhcCCccHHHHHhhhh--hhcCChHHHHHHHHHHHHc-cCcccC----------------
Confidence 2222222221 12223333222 2234455555555554332 112111
Q ss_pred HHHHHHHHHHHhcCCcchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCCccc-------HHHHHHHHHhCCChhHHHHHHH
Q 004487 293 IGRQIHTQTIVTTAISEVKVANSLVDMYAKCGRFEEAKEIFANLSHISTVP-------WTAMISAYVQKGNLEEALNLFI 365 (749)
Q Consensus 293 ~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~-------~~~li~~~~~~g~~~~A~~l~~ 365 (749)
...-...|..+.+.|-..|+++.|+.+|++..+.+-.+ |-.-...-.+..+++.|+++.+
T Consensus 383 -------------~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~ 449 (835)
T KOG2047|consen 383 -------------VGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMR 449 (835)
T ss_pred -------------CCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 00112334455555555555555555555554332222 2222223334445555555544
Q ss_pred HHHHC----------CCC-------cCHHhHHHHHHHhcccCcHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHH
Q 004487 366 EMCRA----------NIS-------ADQATFASILRASAELASLSLGKQLHSFVIRSGFMSNVFSGSALLDMYAKSGSLK 428 (749)
Q Consensus 366 ~m~~~----------g~~-------p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~ 428 (749)
..... |-. -+...|+..+..--..|-++..+.+++.+++..+.....+.| ....+-...-++
T Consensus 450 ~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLriaTPqii~N-yAmfLEeh~yfe 528 (835)
T KOG2047|consen 450 RATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIATPQIIIN-YAMFLEEHKYFE 528 (835)
T ss_pred hhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCHHHHHH-HHHHHHhhHHHH
Confidence 43221 000 122334444444445667788888888888876543222222 223344556678
Q ss_pred HHHHHHhhCCC----CCc-chHHHHHHHHHh---cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH--HhccCCHHHHHH
Q 004487 429 DAIQTFKEMPE----RNI-VSWNALISACAQ---NGDAQATLKSFEDMVQSGYQPDSVSLLSVLSA--CSHCGLIEEGLQ 498 (749)
Q Consensus 429 ~A~~~~~~~~~----~~~-~~~~~li~~~~~---~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a--~~~~g~~~~a~~ 498 (749)
++.+++++-.. |++ ..||..+.-+.+ ....+.|..+|++.++ |.+|...-+..|+-| =..-|....|+.
T Consensus 529 esFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~-~Cpp~~aKtiyLlYA~lEEe~GLar~ams 607 (835)
T KOG2047|consen 529 ESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALD-GCPPEHAKTIYLLYAKLEEEHGLARHAMS 607 (835)
T ss_pred HHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 88888887652 443 478887766554 2357889999999988 677776544444433 223577788888
Q ss_pred HHHHhHH
Q 004487 499 YFNSMTQ 505 (749)
Q Consensus 499 ~~~~m~~ 505 (749)
++++...
T Consensus 608 iyerat~ 614 (835)
T KOG2047|consen 608 IYERATS 614 (835)
T ss_pred HHHHHHh
Confidence 8877653
No 44
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.39 E-value=2.8e-09 Score=105.00 Aligned_cols=416 Identities=12% Similarity=0.116 Sum_probs=300.9
Q ss_pred cCCChHHHHHHHccCCC---CCcchHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCcchHHHHHHHHHccCChHHHHHH
Q 004487 221 KHDCVVEARKLFGEMPE---VDGVSYNVMITCYAWNEQYKESLKLFRELQFTRFDRSQFPFSTLLSVVANKLDLQIGRQI 297 (749)
Q Consensus 221 ~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~ 297 (749)
..+++..|+.+|++..+ +++..|--.+..=.++.+...|..++++....-...|..-| .-+..--..|++..|+++
T Consensus 85 sq~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWy-KY~ymEE~LgNi~gaRqi 163 (677)
T KOG1915|consen 85 SQKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWY-KYIYMEEMLGNIAGARQI 163 (677)
T ss_pred hHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHH-HHHHHHHHhcccHHHHHH
Confidence 34567778888888776 55667777777888888888888888887654333333332 223344567899999999
Q ss_pred HHHHHHhcCCcchhHHHHHHHHHHhcCCHHHHHHHHHhcC--CCCcccHHHHHHHHHhCCChhHHHHHHHHHHHCCCCcC
Q 004487 298 HTQTIVTTAISEVKVANSLVDMYAKCGRFEEAKEIFANLS--HISTVPWTAMISAYVQKGNLEEALNLFIEMCRANISAD 375 (749)
Q Consensus 298 ~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~ 375 (749)
|..-.+. .|+...|.+.|+.-.+-+.++.|+.++++.. .|++.+|--...--.++|+..-|..+|....+. -.|
T Consensus 164 ferW~~w--~P~eqaW~sfI~fElRykeieraR~IYerfV~~HP~v~~wikyarFE~k~g~~~~aR~VyerAie~--~~~ 239 (677)
T KOG1915|consen 164 FERWMEW--EPDEQAWLSFIKFELRYKEIERARSIYERFVLVHPKVSNWIKYARFEEKHGNVALARSVYERAIEF--LGD 239 (677)
T ss_pred HHHHHcC--CCcHHHHHHHHHHHHHhhHHHHHHHHHHHHheecccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH--hhh
Confidence 9887764 8999999999999999999999999999864 688888888888888899999999999887763 123
Q ss_pred HHhHHHHHHHh----cccCcHHHHHHHHHHHHHhCCCC-chhHHHHHHHHHHhcCCH---HHHHHHHhhC-----CC---
Q 004487 376 QATFASILRAS----AELASLSLGKQLHSFVIRSGFMS-NVFSGSALLDMYAKSGSL---KDAIQTFKEM-----PE--- 439 (749)
Q Consensus 376 ~~t~~~ll~~~----~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~li~~y~~~g~~---~~A~~~~~~~-----~~--- 439 (749)
...-..++.++ .+...++.|+-++...++.-... ....|..+...=-+-|+. +++.--=.++ ..
T Consensus 240 d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~np 319 (677)
T KOG1915|consen 240 DEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKNP 319 (677)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhCC
Confidence 33333344444 34567788888998888763322 234454444444444554 3333222222 22
Q ss_pred CCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH-------HHHHHHHHH---hccCCHHHHHHHHHHhHHhcCC
Q 004487 440 RNIVSWNALISACAQNGDAQATLKSFEDMVQSGYQPDSV-------SLLSVLSAC---SHCGLIEEGLQYFNSMTQKYKL 509 (749)
Q Consensus 440 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-------t~~~ll~a~---~~~g~~~~a~~~~~~m~~~~~~ 509 (749)
-|-.+|--.+..-...|+.+...++|++.+.. ++|-.. .|.-+=-+| ....+++.+.++++...+ -|
T Consensus 320 ~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~--lI 396 (677)
T KOG1915|consen 320 YNYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLD--LI 396 (677)
T ss_pred CCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh--hc
Confidence 35678888888888889999999999999985 666321 222222222 347899999999999884 24
Q ss_pred CCChHHHHHHHHHH----HHcCCHHHHHHHHHhC-CCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCchhHH
Q 004487 510 RPKKEHYASMVDIL----CRSGCFDEAEKLMAQM-PFEPDEIMWSSVINSCRIHKNLEFAKKAADQLFKMEKLRDAAPYV 584 (749)
Q Consensus 510 ~p~~~~~~~li~~~----~~~g~~~~A~~~~~~~-~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 584 (749)
+....+++-+--+| .|+.++..|.+++... |.-|..-++...|..-.+.++++....++++.++-+| .|..++.
T Consensus 397 PHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~P-e~c~~W~ 475 (677)
T KOG1915|consen 397 PHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFSP-ENCYAWS 475 (677)
T ss_pred CcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcCh-HhhHHHH
Confidence 44556777665554 4788999999999877 8889999999999999999999999999999999999 9999999
Q ss_pred HHHHHHHHcCCchhHHHHHHHHHhCCCccCCceeEEEeCCEEEEEEeCCCCCcChHHHHHHHHHH
Q 004487 585 AMSNIYAVAGQWESVSQVKKAMRERGVRKVTAYSWVELKSKVHVFTANDELHPQTNEIRRKIENL 649 (749)
Q Consensus 585 ~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~s~~~~~~~~~~f~~~~~~~~~~~~~~~~l~~l 649 (749)
-.+.+-...|+++.|..+++...++...-.|..-|- ..-.|.....-+..+..+|..+.+.
T Consensus 476 kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwk----aYIdFEi~~~E~ekaR~LYerlL~r 536 (677)
T KOG1915|consen 476 KYAELETSLGDTDRARAIFELAISQPALDMPELLWK----AYIDFEIEEGEFEKARALYERLLDR 536 (677)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHH----HhhhhhhhcchHHHHHHHHHHHHHh
Confidence 999999999999999999999988866555555442 1112333334455566666665543
No 45
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.38 E-value=3.2e-10 Score=119.10 Aligned_cols=274 Identities=10% Similarity=0.111 Sum_probs=202.9
Q ss_pred cCCHHHHHHHHHhcCCCC-ccc--HHHHHHHHHhCCChhHHHHHHHHHHHCCCCcCHHhHH--HHHHHhcccCcHHHHHH
Q 004487 323 CGRFEEAKEIFANLSHIS-TVP--WTAMISAYVQKGNLEEALNLFIEMCRANISADQATFA--SILRASAELASLSLGKQ 397 (749)
Q Consensus 323 ~g~~~~A~~~~~~~~~~~-~~~--~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~--~ll~~~~~~~~~~~a~~ 397 (749)
.|+++.|++.+....+.. ... +........+.|++++|...|.++.+. .|+..... .....+...|+.+.|..
T Consensus 97 eGd~~~A~k~l~~~~~~~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~Al~ 174 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHAEQPVVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAARH 174 (398)
T ss_pred CCCHHHHHHHHHHHHhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHHHH
Confidence 588888888887765432 122 322233447888899999999888763 45544333 23456677888999988
Q ss_pred HHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCc-----------chHHHHHHHHHhcCCHHHHHHHHH
Q 004487 398 LHSFVIRSGFMSNVFSGSALLDMYAKSGSLKDAIQTFKEMPERNI-----------VSWNALISACAQNGDAQATLKSFE 466 (749)
Q Consensus 398 ~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~-----------~~~~~li~~~~~~g~~~~A~~~~~ 466 (749)
.++.+.+.. +.++.+...+...|.+.|++++|.+++..+.+... ..|..++.......+.+...++++
T Consensus 175 ~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~ 253 (398)
T PRK10747 175 GVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWK 253 (398)
T ss_pred HHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 888887766 44677888889999999999999999888874222 133344444445556667777777
Q ss_pred HHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC-
Q 004487 467 DMVQSGYQPDSVSLLSVLSACSHCGLIEEGLQYFNSMTQKYKLRPKKEHYASMVDILCRSGCFDEAEKLMAQM-PFEPD- 544 (749)
Q Consensus 467 ~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~- 544 (749)
.+.+. .+.+......+..++...|+.++|.+.+++..+ ..|+.... ++.+....++.+++.+.+++. ...|+
T Consensus 254 ~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~---~~~~~~l~--~l~~~l~~~~~~~al~~~e~~lk~~P~~ 327 (398)
T PRK10747 254 NQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLK---RQYDERLV--LLIPRLKTNNPEQLEKVLRQQIKQHGDT 327 (398)
T ss_pred hCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh---cCCCHHHH--HHHhhccCCChHHHHHHHHHHHhhCCCC
Confidence 76443 345677888899999999999999999988875 35555322 223333559999999999888 55565
Q ss_pred HHhHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHcCCchhHHHHHHHHH
Q 004487 545 EIMWSSVINSCRIHKNLEFAKKAADQLFKMEKLRDAAPYVAMSNIYAVAGQWESVSQVKKAMR 607 (749)
Q Consensus 545 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 607 (749)
+..+.++...|...+++++|...|+++++..| +...|..|+.++.+.|+.++|.+++++-.
T Consensus 328 ~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P--~~~~~~~La~~~~~~g~~~~A~~~~~~~l 388 (398)
T PRK10747 328 PLLWSTLGQLLMKHGEWQEASLAFRAALKQRP--DAYDYAWLADALDRLHKPEEAAAMRRDGL 388 (398)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 56677888899999999999999999999998 67778899999999999999999988753
No 46
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.37 E-value=1.1e-10 Score=120.16 Aligned_cols=274 Identities=14% Similarity=0.119 Sum_probs=211.4
Q ss_pred CHHHHHHHHHhcCC--CCcccH--HHHHHHHHhCCChhHHHHHHHHHHHCC--CCcCHHhHHHHHHHhcccCcHHHHHHH
Q 004487 325 RFEEAKEIFANLSH--ISTVPW--TAMISAYVQKGNLEEALNLFIEMCRAN--ISADQATFASILRASAELASLSLGKQL 398 (749)
Q Consensus 325 ~~~~A~~~~~~~~~--~~~~~~--~~li~~~~~~g~~~~A~~l~~~m~~~g--~~p~~~t~~~ll~~~~~~~~~~~a~~~ 398 (749)
+.++|...|..+++ .|+. | ..+-.+|...+++++|.++|+...+.. ..-+...|+++|--+-+. .+...
T Consensus 334 ~~~~A~~~~~klp~h~~nt~-wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~----v~Ls~ 408 (638)
T KOG1126|consen 334 NCREALNLFEKLPSHHYNTG-WVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDE----VALSY 408 (638)
T ss_pred HHHHHHHHHHhhHHhcCCch-HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhh----HHHHH
Confidence 46788899988664 3333 4 456678999999999999999998742 112556787777644321 11222
Q ss_pred H-HHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCCC---CcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 004487 399 H-SFVIRSGFMSNVFSGSALLDMYAKSGSLKDAIQTFKEMPER---NIVSWNALISACAQNGDAQATLKSFEDMVQSGYQ 474 (749)
Q Consensus 399 ~-~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 474 (749)
+ ..+++ --+..+.+|.++.+.|.-.++.+.|.+.|++..+- ...+|+.+..-+.....++.|...|+..+. +.
T Consensus 409 Laq~Li~-~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~--~~ 485 (638)
T KOG1126|consen 409 LAQDLID-TDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALG--VD 485 (638)
T ss_pred HHHHHHh-hCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhc--CC
Confidence 2 22222 23457889999999999999999999999998854 456777777778888999999999999876 56
Q ss_pred CCHH-HHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHhHHH
Q 004487 475 PDSV-SLLSVLSACSHCGLIEEGLQYFNSMTQKYKLRPK-KEHYASMVDILCRSGCFDEAEKLMAQM-PFEP-DEIMWSS 550 (749)
Q Consensus 475 p~~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ 550 (749)
|+.. .|..+...|.+.++++.|.-.|+... .+.|. .....++...+-+.|+.++|+++++++ ...| |+-.---
T Consensus 486 ~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~---~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~ 562 (638)
T KOG1126|consen 486 PRHYNAWYGLGTVYLKQEKLEFAEFHFQKAV---EINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYH 562 (638)
T ss_pred chhhHHHHhhhhheeccchhhHHHHHHHhhh---cCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHH
Confidence 6554 77788889999999999999999887 57784 456677888999999999999999998 4444 3222222
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHcCCchhHHHHHHHHHhCC
Q 004487 551 VINSCRIHKNLEFAKKAADQLFKMEKLRDAAPYVAMSNIYAVAGQWESVSQVKKAMRERG 610 (749)
Q Consensus 551 ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 610 (749)
-...+...+++++|...++++.++-| .+...|.+++.+|-+.|+.+.|..-+.-|.+..
T Consensus 563 ~~~il~~~~~~~eal~~LEeLk~~vP-~es~v~~llgki~k~~~~~~~Al~~f~~A~~ld 621 (638)
T KOG1126|consen 563 RASILFSLGRYVEALQELEELKELVP-QESSVFALLGKIYKRLGNTDLALLHFSWALDLD 621 (638)
T ss_pred HHHHHHhhcchHHHHHHHHHHHHhCc-chHHHHHHHHHHHHHHccchHHHHhhHHHhcCC
Confidence 34445667899999999999999999 999999999999999999999999888776543
No 47
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.36 E-value=8.6e-09 Score=101.59 Aligned_cols=253 Identities=11% Similarity=0.108 Sum_probs=193.3
Q ss_pred HHHHhCCChhHHHHHHHHHHHCCCCcCHHhHHHHHHHhcccCcHHHHHHHHHHHHHhCC--CCchhHHHHHHHHHHhcCC
Q 004487 349 SAYVQKGNLEEALNLFIEMCRANISADQATFASILRASAELASLSLGKQLHSFVIRSGF--MSNVFSGSALLDMYAKSGS 426 (749)
Q Consensus 349 ~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~li~~y~~~g~ 426 (749)
.+|-...+.++++.-.......|+.-+...-+....+.-...+++.|+.+|+.+.+... -.|..+|+.++-.-..+.+
T Consensus 235 ~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~sk 314 (559)
T KOG1155|consen 235 KAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSK 314 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHH
Confidence 44555556777777777777777655555444444555667788888888888887642 1356666665533222222
Q ss_pred HHH-HHHHHhhCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHhccCCHHHHHHHHHHhH
Q 004487 427 LKD-AIQTFKEMPERNIVSWNALISACAQNGDAQATLKSFEDMVQSGYQPDSV-SLLSVLSACSHCGLIEEGLQYFNSMT 504 (749)
Q Consensus 427 ~~~-A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~m~ 504 (749)
+.- |..++ .+.+-.+.|.-.+.+-|+-.++.++|...|++.++ +.|... .|+.+..-|....+...|.+-++...
T Consensus 315 Ls~LA~~v~-~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALk--LNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAv 391 (559)
T KOG1155|consen 315 LSYLAQNVS-NIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALK--LNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAV 391 (559)
T ss_pred HHHHHHHHH-HhccCCccceeeehhHHHHHHhHHHHHHHHHHHHh--cCcchhHHHHHhhHHHHHhcccHHHHHHHHHHH
Confidence 222 22222 23333445556667778888999999999999998 567654 67777778999999999999999887
Q ss_pred HhcCCCC-ChHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHhHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCch
Q 004487 505 QKYKLRP-KKEHYASMVDILCRSGCFDEAEKLMAQM-PFEP-DEIMWSSVINSCRIHKNLEFAKKAADQLFKMEKLRDAA 581 (749)
Q Consensus 505 ~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 581 (749)
.+.| |-..|-.|..+|.-.+...-|+-+|++. ..+| |...|.+|...|.+.++.++|++.|.+++..+- .+..
T Consensus 392 ---di~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~d-te~~ 467 (559)
T KOG1155|consen 392 ---DINPRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGD-TEGS 467 (559)
T ss_pred ---hcCchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccc-cchH
Confidence 4556 5678888999999999999999999998 7777 689999999999999999999999999999988 7889
Q ss_pred hHHHHHHHHHHcCCchhHHHHHHHHHh
Q 004487 582 PYVAMSNIYAVAGQWESVSQVKKAMRE 608 (749)
Q Consensus 582 ~~~~l~~~~~~~g~~~~a~~~~~~m~~ 608 (749)
.|..|+++|-+.++.++|...+++-.+
T Consensus 468 ~l~~LakLye~l~d~~eAa~~yek~v~ 494 (559)
T KOG1155|consen 468 ALVRLAKLYEELKDLNEAAQYYEKYVE 494 (559)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 999999999999999999999988755
No 48
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.34 E-value=8.2e-10 Score=107.81 Aligned_cols=256 Identities=11% Similarity=0.105 Sum_probs=175.9
Q ss_pred HHHHhCCChhHHHHHHHHHHHCCCCcCHHh--HHHHHHHhcccCcHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCC
Q 004487 349 SAYVQKGNLEEALNLFIEMCRANISADQAT--FASILRASAELASLSLGKQLHSFVIRSGFMSNVFSGSALLDMYAKSGS 426 (749)
Q Consensus 349 ~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t--~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~ 426 (749)
..|.++|+++.|+++++-+.+..-+.-... -.+.+.-.-.-.++..|.++-+..+...- -+....+.-.+.-...|+
T Consensus 427 ~~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dr-yn~~a~~nkgn~~f~ngd 505 (840)
T KOG2003|consen 427 GELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDR-YNAAALTNKGNIAFANGD 505 (840)
T ss_pred HHHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccc-cCHHHhhcCCceeeecCc
Confidence 347889999999999988876533222221 12233333333456666666655543321 111111111222345689
Q ss_pred HHHHHHHHhhCCCCCcchHHHHHH---HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHh
Q 004487 427 LKDAIQTFKEMPERNIVSWNALIS---ACAQNGDAQATLKSFEDMVQSGYQPDSVSLLSVLSACSHCGLIEEGLQYFNSM 503 (749)
Q Consensus 427 ~~~A~~~~~~~~~~~~~~~~~li~---~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m 503 (749)
+++|.+.+.+....|...-.+|.+ .+-..|+.++|++.|-++..- +.-+...+..+.+.|....+..+|++++...
T Consensus 506 ~dka~~~ykeal~ndasc~ealfniglt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie~~~q~ 584 (840)
T KOG2003|consen 506 LDKAAEFYKEALNNDASCTEALFNIGLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIELLMQA 584 (840)
T ss_pred HHHHHHHHHHHHcCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHHHHHHh
Confidence 999999999998777665554433 366789999999999888662 2334557778888899999999999998665
Q ss_pred HHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHh-CCCCC-CHHhHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCch
Q 004487 504 TQKYKLRPKKEHYASMVDILCRSGCFDEAEKLMAQ-MPFEP-DEIMWSSVINSCRIHKNLEFAKKAADQLFKMEKLRDAA 581 (749)
Q Consensus 504 ~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~-~~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 581 (749)
.. -++.|+...+.|.++|-+.|+-.+|.+..-. ...-| +..+..-|..-|....=.++++..|+++--+.| ....
T Consensus 585 ~s--lip~dp~ilskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp-~~~k 661 (840)
T KOG2003|consen 585 NS--LIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQP-NQSK 661 (840)
T ss_pred cc--cCCCCHHHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCc-cHHH
Confidence 42 3555788999999999999999999987544 34334 444544455556666778999999999999998 4444
Q ss_pred hHHHHHHHHHHcCCchhHHHHHHHHHhC
Q 004487 582 PYVAMSNIYAVAGQWESVSQVKKAMRER 609 (749)
Q Consensus 582 ~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 609 (749)
--..++.++.+.|++.+|..+++..-.+
T Consensus 662 wqlmiasc~rrsgnyqka~d~yk~~hrk 689 (840)
T KOG2003|consen 662 WQLMIASCFRRSGNYQKAFDLYKDIHRK 689 (840)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHHh
Confidence 4445566788999999999999887543
No 49
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.33 E-value=3.2e-09 Score=112.25 Aligned_cols=289 Identities=13% Similarity=0.089 Sum_probs=139.2
Q ss_pred hcCChhHHHHHHHHHHHCCCCCCcch-HHHHHHHHHccCChHHHHHHHHHHHHhcCCcchhHHHHHHHHHHhcCCHHHHH
Q 004487 252 WNEQYKESLKLFRELQFTRFDRSQFP-FSTLLSVVANKLDLQIGRQIHTQTIVTTAISEVKVANSLVDMYAKCGRFEEAK 330 (749)
Q Consensus 252 ~~g~~~~A~~~~~~m~~~~~~p~~~t-~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~ 330 (749)
..|+++.|.+.+.+..+. .|++.. +...-.+....|+.+.+.+.+....+....+...+.......+...|+++.|.
T Consensus 96 ~~g~~~~A~~~l~~~~~~--~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al 173 (409)
T TIGR00540 96 AEGDYAKAEKLIAKNADH--AAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAAR 173 (409)
T ss_pred hCCCHHHHHHHHHHHhhc--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHH
Confidence 467777777777665543 233222 22223334445666666666655544332222223333345555555555555
Q ss_pred HHHHhcCCC---CcccHHHHHHHHHhCCChhHHHHHHHHHHHCCCCcCHHhHHHHHHHhcccCcHHHHHHHHHHHHHhCC
Q 004487 331 EIFANLSHI---STVPWTAMISAYVQKGNLEEALNLFIEMCRANISADQATFASILRASAELASLSLGKQLHSFVIRSGF 407 (749)
Q Consensus 331 ~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 407 (749)
..++.+.+. +...+..+...|.+.|++++|.+++..+.+.++.+. ..+..+-.
T Consensus 174 ~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~-~~~~~l~~----------------------- 229 (409)
T TIGR00540 174 HGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDD-EEFADLEQ----------------------- 229 (409)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCH-HHHHHHHH-----------------------
Confidence 555554432 222244455555555555555555555555432211 11100000
Q ss_pred CCchhHHHHHHHHHHhcCCHHHHHHHHhhCCC---CCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH---H
Q 004487 408 MSNVFSGSALLDMYAKSGSLKDAIQTFKEMPE---RNIVSWNALISACAQNGDAQATLKSFEDMVQSGYQPDSVSL---L 481 (749)
Q Consensus 408 ~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~---~ 481 (749)
..+..+++.-......+...+.++..++ .+...+..+...+...|+.++|.+++++..+. .||.... .
T Consensus 230 ----~a~~~~l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~--~pd~~~~~~~~ 303 (409)
T TIGR00540 230 ----KAEIGLLDEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKK--LGDDRAISLPL 303 (409)
T ss_pred ----HHHHHHHHHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhh--CCCcccchhHH
Confidence 0011111111112223344444444442 36667777777777778888888877777773 4444321 1
Q ss_pred HHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHh--C-CCCCCHHhHHHHHHHHHhc
Q 004487 482 SVLSACSHCGLIEEGLQYFNSMTQKYKLRPKKEHYASMVDILCRSGCFDEAEKLMAQ--M-PFEPDEIMWSSVINSCRIH 558 (749)
Q Consensus 482 ~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~--~-~~~p~~~~~~~ll~~~~~~ 558 (749)
.........++.+.+.+.++...+...-.|+.....++...+.+.|++++|.+.|+. . ...|+...+..+...+.+.
T Consensus 304 l~~~~~l~~~~~~~~~~~~e~~lk~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~ 383 (409)
T TIGR00540 304 CLPIPRLKPEDNEKLEKLIEKQAKNVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQA 383 (409)
T ss_pred HHHhhhcCCCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHc
Confidence 111122234555666666655554322222113344555555666666666666652 2 3445555555555555666
Q ss_pred CCHHHHHHHHHHHh
Q 004487 559 KNLEFAKKAADQLF 572 (749)
Q Consensus 559 g~~~~a~~~~~~~~ 572 (749)
|+.++|.+++++.+
T Consensus 384 g~~~~A~~~~~~~l 397 (409)
T TIGR00540 384 GDKAEAAAMRQDSL 397 (409)
T ss_pred CCHHHHHHHHHHHH
Confidence 66666666555543
No 50
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.33 E-value=1.1e-09 Score=115.73 Aligned_cols=282 Identities=11% Similarity=0.051 Sum_probs=195.1
Q ss_pred HcCCChHHHHHHHccCCCC--Ccc-hHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCcc--hHHHHHHHHHccCChHHH
Q 004487 220 SKHDCVVEARKLFGEMPEV--DGV-SYNVMITCYAWNEQYKESLKLFRELQFTRFDRSQF--PFSTLLSVVANKLDLQIG 294 (749)
Q Consensus 220 ~~~g~~~~A~~~f~~~~~~--~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~--t~~~ll~~~~~~~~~~~a 294 (749)
...|+++.|++.+....+. +.. .+-.....+.+.|+++.|.+.+.+..+.. |+.. ............|+.+.|
T Consensus 95 ~~~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~--p~~~l~~~~~~a~l~l~~~~~~~A 172 (409)
T TIGR00540 95 LAEGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELA--GNDNILVEIARTRILLAQNELHAA 172 (409)
T ss_pred HhCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CcCchHHHHHHHHHHHHCCCHHHH
Confidence 4689999999999887653 322 23334467788899999999999987643 4443 333346677789999999
Q ss_pred HHHHHHHHHhcCCcchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCCccc---HHHHH-H---HHHhCCChhHHHHHHHHH
Q 004487 295 RQIHTQTIVTTAISEVKVANSLVDMYAKCGRFEEAKEIFANLSHISTVP---WTAMI-S---AYVQKGNLEEALNLFIEM 367 (749)
Q Consensus 295 ~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~li-~---~~~~~g~~~~A~~l~~~m 367 (749)
...++.+.+.. +.+..+...+...|.+.|+++.|.+.+..+.+.++.+ +..+- . +....+..+++.+.+..+
T Consensus 173 l~~l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~ 251 (409)
T TIGR00540 173 RHGVDKLLEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNW 251 (409)
T ss_pred HHHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 99999999886 5566788999999999999999999999887654322 21110 0 111111111111122222
Q ss_pred HHCCCCcCHHhHHHHHHHhcccCcHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCC--CCcch-
Q 004487 368 CRANISADQATFASILRASAELASLSLGKQLHSFVIRSGFMSNVFSGSALLDMYAKSGSLKDAIQTFKEMPE--RNIVS- 444 (749)
Q Consensus 368 ~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~~~~~- 444 (749)
... .- ...+.++..+..+...+...|+.++|.+++++..+ ||...
T Consensus 252 ~~~-------------------------------~p-~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~ 299 (409)
T TIGR00540 252 WKN-------------------------------QP-RHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAI 299 (409)
T ss_pred HHH-------------------------------CC-HHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccc
Confidence 111 00 00123667777888888899999999998888764 44331
Q ss_pred --HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH---HHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHH
Q 004487 445 --WNALISACAQNGDAQATLKSFEDMVQSGYQPDSV---SLLSVLSACSHCGLIEEGLQYFNSMTQKYKLRPKKEHYASM 519 (749)
Q Consensus 445 --~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~---t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l 519 (749)
+..........++.+.+++.+++..+ ..|+.. ...++...|.+.|++++|.++|+.... +...|+...+..+
T Consensus 300 ~~~~l~~~~~l~~~~~~~~~~~~e~~lk--~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a-~~~~p~~~~~~~L 376 (409)
T TIGR00540 300 SLPLCLPIPRLKPEDNEKLEKLIEKQAK--NVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAA-CKEQLDANDLAMA 376 (409)
T ss_pred hhHHHHHhhhcCCCChHHHHHHHHHHHH--hCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHH-hhcCCCHHHHHHH
Confidence 12222223445788899999988887 456655 445778889999999999999984332 2568999999999
Q ss_pred HHHHHHcCCHHHHHHHHHhC
Q 004487 520 VDILCRSGCFDEAEKLMAQM 539 (749)
Q Consensus 520 i~~~~~~g~~~~A~~~~~~~ 539 (749)
...+.+.|+.++|.+++++.
T Consensus 377 a~ll~~~g~~~~A~~~~~~~ 396 (409)
T TIGR00540 377 ADAFDQAGDKAEAAAMRQDS 396 (409)
T ss_pred HHHHHHcCCHHHHHHHHHHH
Confidence 99999999999999999874
No 51
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.30 E-value=4.1e-09 Score=106.49 Aligned_cols=195 Identities=13% Similarity=0.103 Sum_probs=148.9
Q ss_pred CCchhHHHHHHHHHHhcCCHHHHHHHHhhCCCCC---cchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 004487 408 MSNVFSGSALLDMYAKSGSLKDAIQTFKEMPERN---IVSWNALISACAQNGDAQATLKSFEDMVQSGYQPDSVSLLSVL 484 (749)
Q Consensus 408 ~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll 484 (749)
+..+.+|-++.-.|.-.|+..+|++.|.+...-| ...|-.....|+-.|..++|+..+...-+. ++-....+.-+.
T Consensus 309 P~~a~sW~aVg~YYl~i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl-~~G~hlP~LYlg 387 (611)
T KOG1173|consen 309 PSKALSWFAVGCYYLMIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARL-MPGCHLPSLYLG 387 (611)
T ss_pred CCCCcchhhHHHHHHHhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHh-ccCCcchHHHHH
Confidence 4455666777777777788888888887765322 357888888899999999999888877662 121222344455
Q ss_pred HHHhccCCHHHHHHHHHHhHHhcCCCC-ChHHHHHHHHHHHHcCCHHHHHHHHHhC--C------CCC-CHHhHHHHHHH
Q 004487 485 SACSHCGLIEEGLQYFNSMTQKYKLRP-KKEHYASMVDILCRSGCFDEAEKLMAQM--P------FEP-DEIMWSSVINS 554 (749)
Q Consensus 485 ~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~--~------~~p-~~~~~~~ll~~ 554 (749)
--|.+.++.+.|.++|.... ++-| |+...+-+.-.....+.+.+|..+|+.. + -++ -..+|+.|..+
T Consensus 388 mey~~t~n~kLAe~Ff~~A~---ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~ 464 (611)
T KOG1173|consen 388 MEYMRTNNLKLAEKFFKQAL---AIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHA 464 (611)
T ss_pred HHHHHhccHHHHHHHHHHHH---hcCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHH
Confidence 56888899999999998766 5666 4555555655666778888888888766 1 111 24567888899
Q ss_pred HHhcCCHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHcCCchhHHHHHHHHH
Q 004487 555 CRIHKNLEFAKKAADQLFKMEKLRDAAPYVAMSNIYAVAGQWESVSQVKKAMR 607 (749)
Q Consensus 555 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 607 (749)
|++.+.+++|+..+++.+.+.| .+..+|..++-+|...|+++.|...+.+..
T Consensus 465 ~Rkl~~~~eAI~~~q~aL~l~~-k~~~~~asig~iy~llgnld~Aid~fhKaL 516 (611)
T KOG1173|consen 465 YRKLNKYEEAIDYYQKALLLSP-KDASTHASIGYIYHLLGNLDKAIDHFHKAL 516 (611)
T ss_pred HHHHhhHHHHHHHHHHHHHcCC-CchhHHHHHHHHHHHhcChHHHHHHHHHHH
Confidence 9999999999999999999999 999999999999999999999999998764
No 52
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.29 E-value=1.3e-11 Score=123.72 Aligned_cols=252 Identities=13% Similarity=0.226 Sum_probs=107.1
Q ss_pred HHHHHHHhcCCHHHHHHHHHhc-CC----CCcccHHHHHHHHHhCCChhHHHHHHHHHHHCCCCcCHHhHHHHHHHhccc
Q 004487 315 SLVDMYAKCGRFEEAKEIFANL-SH----ISTVPWTAMISAYVQKGNLEEALNLFIEMCRANISADQATFASILRASAEL 389 (749)
Q Consensus 315 ~li~~~~~~g~~~~A~~~~~~~-~~----~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~ 389 (749)
.+..++.+.|++++|.++++.. .. .+..-|..+.......+++++|...++++...+.. +...+..++.. ...
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~ 90 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQD 90 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc-ccc
Confidence 3466677788888888888432 22 23333666666666778888888888888765422 34445555555 577
Q ss_pred CcHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCC-----CCCcchHHHHHHHHHhcCCHHHHHHH
Q 004487 390 ASLSLGKQLHSFVIRSGFMSNVFSGSALLDMYAKSGSLKDAIQTFKEMP-----ERNIVSWNALISACAQNGDAQATLKS 464 (749)
Q Consensus 390 ~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~-----~~~~~~~~~li~~~~~~g~~~~A~~~ 464 (749)
++++.|.++.....+.. +++..+..++..|.+.++++++.++++.+. +.+...|..+...+.+.|+.++|++.
T Consensus 91 ~~~~~A~~~~~~~~~~~--~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~ 168 (280)
T PF13429_consen 91 GDPEEALKLAEKAYERD--GDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRD 168 (280)
T ss_dssp -----------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHH
T ss_pred ccccccccccccccccc--cccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 78888887776554433 455666778888899999999999888744 35667888888999999999999999
Q ss_pred HHHHHHCCCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHhC-CCC
Q 004487 465 FEDMVQSGYQPD-SVSLLSVLSACSHCGLIEEGLQYFNSMTQKYKLRPKKEHYASMVDILCRSGCFDEAEKLMAQM-PFE 542 (749)
Q Consensus 465 ~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~ 542 (749)
+++..+ ..|+ ......++..+...|+.+++.+++....+. .+.++..+..+..+|...|+.++|...+++. ...
T Consensus 169 ~~~al~--~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~--~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~ 244 (280)
T PF13429_consen 169 YRKALE--LDPDDPDARNALAWLLIDMGDYDEAREALKRLLKA--APDDPDLWDALAAAYLQLGRYEEALEYLEKALKLN 244 (280)
T ss_dssp HHHHHH--H-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH---HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHS
T ss_pred HHHHHH--cCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHH--CcCHHHHHHHHHHHhcccccccccccccccccccc
Confidence 999999 5676 557778888999999999999999888765 2556677888999999999999999999988 434
Q ss_pred C-CHHhHHHHHHHHHhcCCHHHHHHHHHHHhcC
Q 004487 543 P-DEIMWSSVINSCRIHKNLEFAKKAADQLFKM 574 (749)
Q Consensus 543 p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 574 (749)
| |+.+...+..++...|+.++|..+.+++++.
T Consensus 245 p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~~ 277 (280)
T PF13429_consen 245 PDDPLWLLAYADALEQAGRKDEALRLRRQALRL 277 (280)
T ss_dssp TT-HHHHHHHHHHHT------------------
T ss_pred ccccccccccccccccccccccccccccccccc
Confidence 5 6777788889999999999999999887653
No 53
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.27 E-value=1.1e-09 Score=107.00 Aligned_cols=199 Identities=14% Similarity=0.118 Sum_probs=165.1
Q ss_pred CchhHHHHHHHHHHhcCCHHHHHHHHhhCCC---CCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 004487 409 SNVFSGSALLDMYAKSGSLKDAIQTFKEMPE---RNIVSWNALISACAQNGDAQATLKSFEDMVQSGYQPDSVSLLSVLS 485 (749)
Q Consensus 409 ~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~ 485 (749)
.....+..+...|.+.|++++|.+.|++..+ .+...+..+...+...|++++|.+.+++..+.. +.+...+..+..
T Consensus 29 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~ 107 (234)
T TIGR02521 29 KAAKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGT 107 (234)
T ss_pred cHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHH
Confidence 3456677888999999999999999997753 345678888889999999999999999998853 334567777888
Q ss_pred HHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHhHHHHHHHHHhcCCHHH
Q 004487 486 ACSHCGLIEEGLQYFNSMTQKYKLRPKKEHYASMVDILCRSGCFDEAEKLMAQM-PFEP-DEIMWSSVINSCRIHKNLEF 563 (749)
Q Consensus 486 a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~ 563 (749)
.+...|++++|.+.++..............+..+...+...|++++|.+.+++. ...| +...|..+...+...|++++
T Consensus 108 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~ 187 (234)
T TIGR02521 108 FLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKD 187 (234)
T ss_pred HHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHH
Confidence 899999999999999998854222234556777889999999999999999887 4444 46678888889999999999
Q ss_pred HHHHHHHHhcCCCCCCchhHHHHHHHHHHcCCchhHHHHHHHHHhC
Q 004487 564 AKKAADQLFKMEKLRDAAPYVAMSNIYAVAGQWESVSQVKKAMRER 609 (749)
Q Consensus 564 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 609 (749)
|...++++.+..| .+...+..++.++...|++++|..+.+.+...
T Consensus 188 A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 232 (234)
T TIGR02521 188 ARAYLERYQQTYN-QTAESLWLGIRIARALGDVAAAQRYGAQLQKL 232 (234)
T ss_pred HHHHHHHHHHhCC-CCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhh
Confidence 9999999999977 78888889999999999999999998887543
No 54
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.26 E-value=1.3e-08 Score=95.82 Aligned_cols=311 Identities=14% Similarity=0.177 Sum_probs=187.1
Q ss_pred hcCChhHHHHHHHHHHHCCCCCCcchHHHHHHHHHccCChHHHHHHHHHHHHhcCCc---chhHHHHHHHHHHhcCCHHH
Q 004487 252 WNEQYKESLKLFRELQFTRFDRSQFPFSTLLSVVANKLDLQIGRQIHTQTIVTTAIS---EVKVANSLVDMYAKCGRFEE 328 (749)
Q Consensus 252 ~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~---~~~~~~~li~~~~~~g~~~~ 328 (749)
-++++++|.++|-+|.+.. +.+..+-.++-+.+.+.|..+.|.++|..+.++.--+ .....-.|..-|...|-+|.
T Consensus 47 Ls~Q~dKAvdlF~e~l~~d-~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DR 125 (389)
T COG2956 47 LSNQPDKAVDLFLEMLQED-PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDR 125 (389)
T ss_pred hhcCcchHHHHHHHHHhcC-chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhH
Confidence 3567888888888887631 1112223345566777788888888887777653211 12334456677888888888
Q ss_pred HHHHHHhcCCCCccc---HHHHHHHHHhCCChhHHHHHHHHHHHCCCCcCHHhHHHHHHHhcccCcHHHHHHHHHHHHHh
Q 004487 329 AKEIFANLSHISTVP---WTAMISAYVQKGNLEEALNLFIEMCRANISADQATFASILRASAELASLSLGKQLHSFVIRS 405 (749)
Q Consensus 329 A~~~~~~~~~~~~~~---~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~ 405 (749)
|+.+|..+.+.+... .-.|+..|-+..+|++|++.-+++.+.+-.+..+-.
T Consensus 126 AE~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eI-------------------------- 179 (389)
T COG2956 126 AEDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEI-------------------------- 179 (389)
T ss_pred HHHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHH--------------------------
Confidence 888888877644333 566788888888888888888877776544432221
Q ss_pred CCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCCCC---cchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 004487 406 GFMSNVFSGSALLDMYAKSGSLKDAIQTFKEMPERN---IVSWNALISACAQNGDAQATLKSFEDMVQSGYQPDSVSLLS 482 (749)
Q Consensus 406 ~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ 482 (749)
...|.-|...+....+++.|..++.+..+.| +..=-.+...+...|+++.|++.++...+.+..--..+...
T Consensus 180 -----AqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~ 254 (389)
T COG2956 180 -----AQFYCELAQQALASSDVDRARELLKKALQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEM 254 (389)
T ss_pred -----HHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHH
Confidence 1223445555555667777777777666322 22223344567788888888888888887542222346667
Q ss_pred HHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHH-HhCCCCCCHHhHHHHHHHHHhcCCH
Q 004487 483 VLSACSHCGLIEEGLQYFNSMTQKYKLRPKKEHYASMVDILCRSGCFDEAEKLM-AQMPFEPDEIMWSSVINSCRIHKNL 561 (749)
Q Consensus 483 ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~-~~~~~~p~~~~~~~ll~~~~~~g~~ 561 (749)
|..+|.+.|+.+++...+..+.+. .+....-..+.+......-.++|...+ ++..-+|+...+.-|+..-...
T Consensus 255 L~~~Y~~lg~~~~~~~fL~~~~~~---~~g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r~Pt~~gf~rl~~~~l~d--- 328 (389)
T COG2956 255 LYECYAQLGKPAEGLNFLRRAMET---NTGADAELMLADLIELQEGIDAAQAYLTRQLRRKPTMRGFHRLMDYHLAD--- 328 (389)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHc---cCCccHHHHHHHHHHHhhChHHHHHHHHHHHhhCCcHHHHHHHHHhhhcc---
Confidence 778888888888888888877743 344333333444333333334444433 2234455544444444321111
Q ss_pred HHHHHHHHHHhcCCCCCCchhHHHHHHHHHHcCCchhHHHHHHHHHhCCCccCCceeEEEeCCEEEEE
Q 004487 562 EFAKKAADQLFKMEKLRDAAPYVAMSNIYAVAGQWESVSQVKKAMRERGVRKVTAYSWVELKSKVHVF 629 (749)
Q Consensus 562 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~s~~~~~~~~~~f 629 (749)
+.-|++.+...++..|....++..|.+.--.-+-+.|.|
T Consensus 329 -----------------------------aeeg~~k~sL~~lr~mvge~l~~~~~YRC~~CGF~a~~l 367 (389)
T COG2956 329 -----------------------------AEEGRAKESLDLLRDMVGEQLRRKPRYRCQNCGFTAHTL 367 (389)
T ss_pred -----------------------------ccccchhhhHHHHHHHHHHHHhhcCCceecccCCcceee
Confidence 123456677777777877767666655544444444554
No 55
>PF13041 PPR_2: PPR repeat family
Probab=99.26 E-value=1.4e-11 Score=86.18 Aligned_cols=50 Identities=40% Similarity=0.700 Sum_probs=48.1
Q ss_pred CCcchHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHhC
Q 004487 137 KDSVSFNALITGFAKEGLNEEAIKLFVEMQHLGFKPSDFTFAAALSAGVG 186 (749)
Q Consensus 137 ~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~ 186 (749)
||+++||++|.+|++.|++++|+++|++|.+.|++||..||+.+|++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 78999999999999999999999999999999999999999999999874
No 56
>PF13041 PPR_2: PPR repeat family
Probab=99.24 E-value=2.4e-11 Score=84.96 Aligned_cols=50 Identities=28% Similarity=0.530 Sum_probs=47.2
Q ss_pred CCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc
Q 004487 440 RNIVSWNALISACAQNGDAQATLKSFEDMVQSGYQPDSVSLLSVLSACSH 489 (749)
Q Consensus 440 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~ 489 (749)
||+++||++|.+|++.|++++|.++|++|.+.|++||..||+.++++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 78999999999999999999999999999999999999999999999874
No 57
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.22 E-value=2.9e-07 Score=93.86 Aligned_cols=431 Identities=16% Similarity=0.187 Sum_probs=248.2
Q ss_pred HHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHhCCCChHHHHHHHHHHHHcCCCCChhHHHH--HHHHHH--cC
Q 004487 147 TGFAKEGLNEEAIKLFVEMQHLGFKPSDFTFAAALSAGVGLADIALGRQVHAFVVKTNFVENVFVANA--LLDLYS--KH 222 (749)
Q Consensus 147 ~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~--Li~~y~--~~ 222 (749)
.-+.++|++++|+....++...+ +-|...+..=+-+..+.+.++.|..+.. +.+. ..+++. +=.+|+ +.
T Consensus 20 n~~~~~~e~e~a~k~~~Kil~~~-pdd~~a~~cKvValIq~~ky~~ALk~ik---k~~~---~~~~~~~~fEKAYc~Yrl 92 (652)
T KOG2376|consen 20 NRHGKNGEYEEAVKTANKILSIV-PDDEDAIRCKVVALIQLDKYEDALKLIK---KNGA---LLVINSFFFEKAYCEYRL 92 (652)
T ss_pred HHhccchHHHHHHHHHHHHHhcC-CCcHhhHhhhHhhhhhhhHHHHHHHHHH---hcch---hhhcchhhHHHHHHHHHc
Confidence 34445556666666666555443 2233444444455555555555543222 1111 011111 234443 67
Q ss_pred CChHHHHHHHccCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCcchH-HHHHHHHHccCChHHHHHHHH-H
Q 004487 223 DCVVEARKLFGEMPEVDGVSYNVMITCYAWNEQYKESLKLFRELQFTRFDRSQFPF-STLLSVVANKLDLQIGRQIHT-Q 300 (749)
Q Consensus 223 g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~-~~ll~~~~~~~~~~~a~~~~~-~ 300 (749)
+..++|...++.....|..+...-...+.+.|++++|+++|+.+.+.+..--..-. ..++.+-+. .-. .
T Consensus 93 nk~Dealk~~~~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~---------l~~~~ 163 (652)
T KOG2376|consen 93 NKLDEALKTLKGLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAA---------LQVQL 163 (652)
T ss_pred ccHHHHHHHHhcccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHh---------hhHHH
Confidence 88999999988665556556666677888999999999999999776543222221 122221111 111 1
Q ss_pred HHHhcCCc--chhHHHHHHHHHHhcCCHHHHHHHHHhc--------CCCCcc-----c-----HHHHHHHHHhCCChhHH
Q 004487 301 TIVTTAIS--EVKVANSLVDMYAKCGRFEEAKEIFANL--------SHISTV-----P-----WTAMISAYVQKGNLEEA 360 (749)
Q Consensus 301 ~~~~g~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~~--------~~~~~~-----~-----~~~li~~~~~~g~~~~A 360 (749)
+......| +-..+-.....++..|++.+|+++++.. .+.|.- . --.|...+...|+.++|
T Consensus 164 ~q~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea 243 (652)
T KOG2376|consen 164 LQSVPEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEA 243 (652)
T ss_pred HHhccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHH
Confidence 11111222 1112222334567789999999998876 222211 1 23455667789999999
Q ss_pred HHHHHHHHHCCCCcCHHhHHHH---HHHhcccCcHHHH--------------HHHHHHHHHhCCCCchhHHHHHHHHHHh
Q 004487 361 LNLFIEMCRANISADQATFASI---LRASAELASLSLG--------------KQLHSFVIRSGFMSNVFSGSALLDMYAK 423 (749)
Q Consensus 361 ~~l~~~m~~~g~~p~~~t~~~l---l~~~~~~~~~~~a--------------~~~~~~~~~~~~~~~~~~~~~li~~y~~ 423 (749)
.+++...+... .+|....... |.+.....++..+ ......+. ..-...+..-++++.+|.
T Consensus 244 ~~iy~~~i~~~-~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls-~~qk~~i~~N~~lL~l~t- 320 (652)
T KOG2376|consen 244 SSIYVDIIKRN-PADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLS-KKQKQAIYRNNALLALFT- 320 (652)
T ss_pred HHHHHHHHHhc-CCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHH-HHHHHHHHHHHHHHHHHh-
Confidence 99999998864 3343222221 2222222222110 11111111 111112333456666665
Q ss_pred cCCHHHHHHHHhhCCCCC-cchHHHHHHHHH--hcCCHHHHHHHHHHHHHCCCCCCHH--HHHHHHHHHhccCCHHHHHH
Q 004487 424 SGSLKDAIQTFKEMPERN-IVSWNALISACA--QNGDAQATLKSFEDMVQSGYQPDSV--SLLSVLSACSHCGLIEEGLQ 498 (749)
Q Consensus 424 ~g~~~~A~~~~~~~~~~~-~~~~~~li~~~~--~~g~~~~A~~~~~~m~~~g~~p~~~--t~~~ll~a~~~~g~~~~a~~ 498 (749)
+..+.+.++-...+... ...+.+++.... +.....+|.+++...-+. .|... .....+.--...|+++.|.+
T Consensus 321 -nk~~q~r~~~a~lp~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~--~p~~s~~v~L~~aQl~is~gn~~~A~~ 397 (652)
T KOG2376|consen 321 -NKMDQVRELSASLPGMSPESLFPILLQEATKVREKKHKKAIELLLQFADG--HPEKSKVVLLLRAQLKISQGNPEVALE 397 (652)
T ss_pred -hhHHHHHHHHHhCCccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhcc--CCchhHHHHHHHHHHHHhcCCHHHHHH
Confidence 45667777777776432 334444444332 233577888888777663 45543 33344445778999999999
Q ss_pred HHH--------HhHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHhC--------CCCCC-HHhHHHHHHHHHhcCCH
Q 004487 499 YFN--------SMTQKYKLRPKKEHYASMVDILCRSGCFDEAEKLMAQM--------PFEPD-EIMWSSVINSCRIHKNL 561 (749)
Q Consensus 499 ~~~--------~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~--------~~~p~-~~~~~~ll~~~~~~g~~ 561 (749)
++. .+. .+.-.+.+..+++.++.+.++-+-|..++.+. ..++. ..+|.-+..--.++|+-
T Consensus 398 il~~~~~~~~ss~~---~~~~~P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~ 474 (652)
T KOG2376|consen 398 ILSLFLESWKSSIL---EAKHLPGTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNE 474 (652)
T ss_pred HHHHHhhhhhhhhh---hhccChhHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCch
Confidence 998 443 23445567788999999999877777776655 22222 23444444445678999
Q ss_pred HHHHHHHHHHhcCCCCCCchhHHHHHHHHHHcCCchhHHHHHH
Q 004487 562 EFAKKAADQLFKMEKLRDAAPYVAMSNIYAVAGQWESVSQVKK 604 (749)
Q Consensus 562 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 604 (749)
++|...++++++..| ++......++.+|++.. .+.|..+-+
T Consensus 475 ~ea~s~leel~k~n~-~d~~~l~~lV~a~~~~d-~eka~~l~k 515 (652)
T KOG2376|consen 475 EEASSLLEELVKFNP-NDTDLLVQLVTAYARLD-PEKAESLSK 515 (652)
T ss_pred HHHHHHHHHHHHhCC-chHHHHHHHHHHHHhcC-HHHHHHHhh
Confidence 999999999999999 99999999999998764 455655543
No 58
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.20 E-value=4.6e-08 Score=95.20 Aligned_cols=286 Identities=12% Similarity=0.116 Sum_probs=161.7
Q ss_pred cCChhHHHHHHHHHHHCCCCCCcchHHHHHHHHHccCChHHHHHHHHHHHHhcCCcchhHHHHHHHHHHhcCCHHHHHHH
Q 004487 253 NEQYKESLKLFRELQFTRFDRSQFPFSTLLSVVANKLDLQIGRQIHTQTIVTTAISEVKVANSLVDMYAKCGRFEEAKEI 332 (749)
Q Consensus 253 ~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~ 332 (749)
.|+|..|.++..+-.+.+-.|- ..|.....+....|+.+.+-+...++.+..-.++..+.-+........|+.+.|+.-
T Consensus 97 eG~~~qAEkl~~rnae~~e~p~-l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~ 175 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQPV-LAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAAREN 175 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcchH-HHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHH
Confidence 3555555555555443332221 223333334445555555555555555544445555566666667777777777776
Q ss_pred HHhcC---CCCcccHHHHHHHHHhCCChhHHHHHHHHHHHCCCCcCHHhHHHHHHHhcccCcHHHHHHHHHHHHHhCCCC
Q 004487 333 FANLS---HISTVPWTAMISAYVQKGNLEEALNLFIEMCRANISADQATFASILRASAELASLSLGKQLHSFVIRSGFMS 409 (749)
Q Consensus 333 ~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~ 409 (749)
.+++. ..++........+|.+.|++.+...++..|.+.|+--|+..- ++
T Consensus 176 v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~-----------------~l----------- 227 (400)
T COG3071 176 VDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAA-----------------RL----------- 227 (400)
T ss_pred HHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHH-----------------HH-----------
Confidence 66554 345555777788888888888888888888887754443211 00
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHhhCC---CCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 004487 410 NVFSGSALLDMYAKSGSLKDAIQTFKEMP---ERNIVSWNALISACAQNGDAQATLKSFEDMVQSGYQPDSVSLLSVLSA 486 (749)
Q Consensus 410 ~~~~~~~li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a 486 (749)
...+++.+++-....+..+.-...++..+ +.++..-.+++.-+.+.|+.++|.++.++..+.+..|+- ..+-.
T Consensus 228 e~~a~~glL~q~~~~~~~~gL~~~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L----~~~~~ 303 (400)
T COG3071 228 EQQAWEGLLQQARDDNGSEGLKTWWKNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRL----CRLIP 303 (400)
T ss_pred HHHHHHHHHHHHhccccchHHHHHHHhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhH----HHHHh
Confidence 11222333333333333333334444444 234555555666667777777777777777776666552 22234
Q ss_pred HhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCCHHhHHHHHHHHHhcCCHHHHH
Q 004487 487 CSHCGLIEEGLQYFNSMTQKYKLRPKKEHYASMVDILCRSGCFDEAEKLMAQM-PFEPDEIMWSSVINSCRIHKNLEFAK 565 (749)
Q Consensus 487 ~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~ll~~~~~~g~~~~a~ 565 (749)
+.+.++...-++..+.-.+.++-.| ..+.+|...|.+.+.+.+|.+.|+.. ...|+...|+-+..++-+.|+.++|.
T Consensus 304 ~l~~~d~~~l~k~~e~~l~~h~~~p--~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~~~~~~la~~~~~~g~~~~A~ 381 (400)
T COG3071 304 RLRPGDPEPLIKAAEKWLKQHPEDP--LLLSTLGRLALKNKLWGKASEALEAALKLRPSASDYAELADALDQLGEPEEAE 381 (400)
T ss_pred hcCCCCchHHHHHHHHHHHhCCCCh--hHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHcCChHHHH
Confidence 5556666666665555554444333 45556666666666666666666655 55566666666666666666666666
Q ss_pred HHHHHHhc
Q 004487 566 KAADQLFK 573 (749)
Q Consensus 566 ~~~~~~~~ 573 (749)
+..++.+.
T Consensus 382 ~~r~e~L~ 389 (400)
T COG3071 382 QVRREALL 389 (400)
T ss_pred HHHHHHHH
Confidence 66665553
No 59
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.14 E-value=9.1e-06 Score=83.93 Aligned_cols=559 Identities=11% Similarity=0.126 Sum_probs=330.5
Q ss_pred CcchHHHHHHHHHcCCChhHHHHHHHHhHhcCCCCCCcchHHHHHHh--------cCCCCChHHHHHHHHHHHHhCCCCc
Q 004487 36 TAVSWTILIGGYSQKNQFREAFKLFVDMRTDGGSDPDYVTFATLLSG--------CSEPDTANELIQVHADIIKFGYNSI 107 (749)
Q Consensus 36 ~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~g~~p~~~~~~~ll~~--------~~~~~~~~~a~~~~~~~~~~g~~~~ 107 (749)
++.+|---|..... ....+...+|++.... ++-+...|..-|++ |-....+......|+..+..- ..-
T Consensus 26 svk~W~RYIe~k~~-sp~k~~~~lYERal~~--lp~sykiW~~YL~~R~~~vk~~~~T~~~~~~vn~c~er~lv~m-Hkm 101 (835)
T KOG2047|consen 26 SVKCWLRYIEHKAG-SPDKQRNLLYERALKE--LPGSYKIWYDYLKARRAQVKHLCPTDPAYESVNNCFERCLVFM-HKM 101 (835)
T ss_pred hHHHHHHHHHHHcc-CChHHHHHHHHHHHHH--CCCchHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHHHHH-hcC
Confidence 34456555554443 3334455567766653 44444444444421 222222233333333322211 134
Q ss_pred hhHHHHHHHHhHcCCChhHHHHHHccCCC-----CCcchHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHH
Q 004487 108 LIICNSLVDSYCKIRCLDLARRVFKEMPQ-----KDSVSFNALITGFAKEGLNEEAIKLFVEMQHLGFKPSDFTFAAALS 182 (749)
Q Consensus 108 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~ 182 (749)
+.+|-..+....+.|++...+..|++... ..-..|...+.-....|-++-++.+|++.++. .|. .-.--+.
T Consensus 102 pRIwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~--~P~--~~eeyie 177 (835)
T KOG2047|consen 102 PRIWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKV--APE--AREEYIE 177 (835)
T ss_pred CHHHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhc--CHH--HHHHHHH
Confidence 56788888888999999999999987543 23446999999889999999999999998874 343 3566677
Q ss_pred HHhCCCChHHHHHHHHHHHHcC------CCCChhHHHHHHHHHHcCCChH---HHHHHHccCCC--CC--cchHHHHHHH
Q 004487 183 AGVGLADIALGRQVHAFVVKTN------FVENVFVANALLDLYSKHDCVV---EARKLFGEMPE--VD--GVSYNVMITC 249 (749)
Q Consensus 183 a~~~~~~~~~a~~~~~~~~~~g------~~~~~~~~~~Li~~y~~~g~~~---~A~~~f~~~~~--~~--~~~~~~li~~ 249 (749)
-++..++++++.+.+..++... .+.+...|..+.+..++.-+.- ....+++.+.. +| ...|++|...
T Consensus 178 ~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~rftDq~g~Lw~SLAdY 257 (835)
T KOG2047|consen 178 YLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRRFTDQLGFLWCSLADY 257 (835)
T ss_pred HHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcccCcHHHHHHHHHHHHH
Confidence 7888999999999988876432 3456667777777776654322 34445555543 23 3479999999
Q ss_pred HHhcCChhHHHHHHHHHHHCCCCCCcchHHHHHHHHHccCC----------------------hHHHHHHHHHHHHhcC-
Q 004487 250 YAWNEQYKESLKLFRELQFTRFDRSQFPFSTLLSVVANKLD----------------------LQIGRQIHTQTIVTTA- 306 (749)
Q Consensus 250 ~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~----------------------~~~a~~~~~~~~~~g~- 306 (749)
|.+.|.+++|-++|++-.+.- .+..-|+.+..+|+.-.. ++....-++.++....
T Consensus 258 YIr~g~~ekarDvyeeai~~v--~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~ 335 (835)
T KOG2047|consen 258 YIRSGLFEKARDVYEEAIQTV--MTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRPL 335 (835)
T ss_pred HHHhhhhHHHHHHHHHHHHhh--eehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccch
Confidence 999999999999999876543 233345555555543222 1112222222222110
Q ss_pred ----------CcchhHHHHHHHHHHhcCCHHHHHHHHHhcC-------CCCcc--cHHHHHHHHHhCCChhHHHHHHHHH
Q 004487 307 ----------ISEVKVANSLVDMYAKCGRFEEAKEIFANLS-------HISTV--PWTAMISAYVQKGNLEEALNLFIEM 367 (749)
Q Consensus 307 ----------~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~-------~~~~~--~~~~li~~~~~~g~~~~A~~l~~~m 367 (749)
+.++..|..-+.. ..|+..+-...+.+.. ..+.. .|..+..-|-.+|+.+.|..+|++.
T Consensus 336 ~lNsVlLRQn~~nV~eW~kRV~l--~e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka 413 (835)
T KOG2047|consen 336 LLNSVLLRQNPHNVEEWHKRVKL--YEGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKA 413 (835)
T ss_pred HHHHHHHhcCCccHHHHHhhhhh--hcCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHh
Confidence 1111112111111 1233444444444432 11111 1888888889999999999999887
Q ss_pred HHCCCCcC---HHhHHHHHHHhcccCcHHHHHHHHHHHHHh-----------CCCC------chhHHHHHHHHHHhcCCH
Q 004487 368 CRANISAD---QATFASILRASAELASLSLGKQLHSFVIRS-----------GFMS------NVFSGSALLDMYAKSGSL 427 (749)
Q Consensus 368 ~~~g~~p~---~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~-----------~~~~------~~~~~~~li~~y~~~g~~ 427 (749)
.+...+-- ..+|..-...=.+..+++.|..+...+... +.++ +..+++..++.--..|-+
T Consensus 414 ~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtf 493 (835)
T KOG2047|consen 414 TKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTF 493 (835)
T ss_pred hcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccH
Confidence 65432211 122222222223344556666655544321 1111 234555566666778888
Q ss_pred HHHHHHHhhCCCCCcchHHHHHH---HHHhcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHhc---cCCHHHHHHHH
Q 004487 428 KDAIQTFKEMPERNIVSWNALIS---ACAQNGDAQATLKSFEDMVQSGYQPDSV-SLLSVLSACSH---CGLIEEGLQYF 500 (749)
Q Consensus 428 ~~A~~~~~~~~~~~~~~~~~li~---~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~---~g~~~~a~~~~ 500 (749)
+....+++++.+-.+.|=..+++ .+-.+.-++++.+.|++-+..=-.|+.. .|+..|.-+.+ .-.++.|..+|
T Consensus 494 estk~vYdriidLriaTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLF 573 (835)
T KOG2047|consen 494 ESTKAVYDRIIDLRIATPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLF 573 (835)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHH
Confidence 88888888887543333333322 2345666888888888766542345543 55555544332 34689999999
Q ss_pred HHhHHhcCCCCCh--HHHHHHHHHHHHcCCHHHHHHHHHhC--CCCCC--HHhHHHHHHHHHhcCCHHHHHHHHHHHhcC
Q 004487 501 NSMTQKYKLRPKK--EHYASMVDILCRSGCFDEAEKLMAQM--PFEPD--EIMWSSVINSCRIHKNLEFAKKAADQLFKM 574 (749)
Q Consensus 501 ~~m~~~~~~~p~~--~~~~~li~~~~~~g~~~~A~~~~~~~--~~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 574 (749)
++..+ +.+|.. ..|-.....=-+-|....|++++++. .+++. ...|+..|.--...=-+..-..+|+++++.
T Consensus 574 EqaL~--~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~~v~~a~~l~myni~I~kaae~yGv~~TR~iYekaIe~ 651 (835)
T KOG2047|consen 574 EQALD--GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATSAVKEAQRLDMYNIYIKKAAEIYGVPRTREIYEKAIES 651 (835)
T ss_pred HHHHh--cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHh
Confidence 99985 666642 22333333344668888999999998 44443 457787775432222245567889999998
Q ss_pred CCCCCc-hhHHHHHHHHHHcCCchhHHHHHHHHHh
Q 004487 575 EKLRDA-APYVAMSNIYAVAGQWESVSQVKKAMRE 608 (749)
Q Consensus 575 ~~~~~~-~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 608 (749)
-|..+. ....-.+.+-.+.|..+.|..++..-.+
T Consensus 652 Lp~~~~r~mclrFAdlEtklGEidRARaIya~~sq 686 (835)
T KOG2047|consen 652 LPDSKAREMCLRFADLETKLGEIDRARAIYAHGSQ 686 (835)
T ss_pred CChHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhh
Confidence 772222 3345667788899999999998876543
No 60
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.14 E-value=1e-07 Score=92.77 Aligned_cols=285 Identities=13% Similarity=0.055 Sum_probs=182.8
Q ss_pred CCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHhCCCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHcCCChHHHHHH
Q 004487 152 EGLNEEAIKLFVEMQHLGFKPSDFTFAAALSAGVGLADIALGRQVHAFVVKTNFVENVFVANALLDLYSKHDCVVEARKL 231 (749)
Q Consensus 152 ~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~ 231 (749)
.|++.+|.++..+-.+.+-.| ...|.....+.-+.|+.+.+-..+..+.+..-.++..+.-+........|+.+.|+.-
T Consensus 97 eG~~~qAEkl~~rnae~~e~p-~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~ 175 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQP-VLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAAREN 175 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcch-HHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHH
Confidence 578888888877766655333 3445556666677788888888887777765566667777777778888888888777
Q ss_pred HccCCC---CCcchHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCcchHHHHHHHHHccCChHHHHHHHHHHHHhcCCc
Q 004487 232 FGEMPE---VDGVSYNVMITCYAWNEQYKESLKLFRELQFTRFDRSQFPFSTLLSVVANKLDLQIGRQIHTQTIVTTAIS 308 (749)
Q Consensus 232 f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~ 308 (749)
.+...+ ++.........+|.+.|++.+...++.+|.+.|.--++.. .++
T Consensus 176 v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~-----------------~~l----------- 227 (400)
T COG3071 176 VDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEA-----------------ARL----------- 227 (400)
T ss_pred HHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHH-----------------HHH-----------
Confidence 665543 5677788888999999999999999999988876544321 111
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CCcccHHHHHHHHHhCCChhHHHHHHHHHHHCCCCcCHHhHHHHHHH
Q 004487 309 EVKVANSLVDMYAKCGRFEEAKEIFANLSH---ISTVPWTAMISAYVQKGNLEEALNLFIEMCRANISADQATFASILRA 385 (749)
Q Consensus 309 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~ 385 (749)
...+++.+++-....+..+.-...++..+. .++..-.+++.-+.+.|+.++|.++..+..+.+..|+..+ +-.
T Consensus 228 e~~a~~glL~q~~~~~~~~gL~~~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L~~----~~~ 303 (400)
T COG3071 228 EQQAWEGLLQQARDDNGSEGLKTWWKNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRLCR----LIP 303 (400)
T ss_pred HHHHHHHHHHHHhccccchHHHHHHHhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhHHH----HHh
Confidence 112334444444444444444445555542 3444466677778888888888888888888776666222 223
Q ss_pred hcccCcHHHHHHHHHHHHH-hCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCC--CCCcchHHHHHHHHHhcCCHHHHH
Q 004487 386 SAELASLSLGKQLHSFVIR-SGFMSNVFSGSALLDMYAKSGSLKDAIQTFKEMP--ERNIVSWNALISACAQNGDAQATL 462 (749)
Q Consensus 386 ~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~ 462 (749)
+.+.++.+.-.+..+...+ .+-. +..+.+|...|.+.+.+.+|...|+... .|+..+|+.+..+|.+.|+..+|.
T Consensus 304 ~l~~~d~~~l~k~~e~~l~~h~~~--p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~~~~~~la~~~~~~g~~~~A~ 381 (400)
T COG3071 304 RLRPGDPEPLIKAAEKWLKQHPED--PLLLSTLGRLALKNKLWGKASEALEAALKLRPSASDYAELADALDQLGEPEEAE 381 (400)
T ss_pred hcCCCCchHHHHHHHHHHHhCCCC--hhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHcCChHHHH
Confidence 4455555544444433333 3333 3556666677777777777777776544 466666666666677777766666
Q ss_pred HHHHHHHHC
Q 004487 463 KSFEDMVQS 471 (749)
Q Consensus 463 ~~~~~m~~~ 471 (749)
+.+++....
T Consensus 382 ~~r~e~L~~ 390 (400)
T COG3071 382 QVRREALLL 390 (400)
T ss_pred HHHHHHHHH
Confidence 666665543
No 61
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.13 E-value=2.3e-08 Score=104.49 Aligned_cols=232 Identities=16% Similarity=0.198 Sum_probs=172.6
Q ss_pred HHhHHHHHHHhcccCcHHHHHHHHHHHHHh-----CC-CCch-hHHHHHHHHHHhcCCHHHHHHHHhhCCC-------C-
Q 004487 376 QATFASILRASAELASLSLGKQLHSFVIRS-----GF-MSNV-FSGSALLDMYAKSGSLKDAIQTFKEMPE-------R- 440 (749)
Q Consensus 376 ~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~-----~~-~~~~-~~~~~li~~y~~~g~~~~A~~~~~~~~~-------~- 440 (749)
..|...+...|...|+++.|..++...++. |. .|.+ ...+.+..+|...+++.+|..+|+++.. +
T Consensus 199 ~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~ 278 (508)
T KOG1840|consen 199 LRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGED 278 (508)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCC
Confidence 346666778888888888888888777664 21 1222 2334577889999999999999988762 1
Q ss_pred ---CcchHHHHHHHHHhcCCHHHHHHHHHHHHH-----CCCC-CCHH-HHHHHHHHHhccCCHHHHHHHHHHhHHhcC--
Q 004487 441 ---NIVSWNALISACAQNGDAQATLKSFEDMVQ-----SGYQ-PDSV-SLLSVLSACSHCGLIEEGLQYFNSMTQKYK-- 508 (749)
Q Consensus 441 ---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~g~~-p~~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~-- 508 (749)
-..+++.|..+|...|++++|...+++..+ .|.. |... -++.+...|...+.+++|..+++...+.+.
T Consensus 279 h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~ 358 (508)
T KOG1840|consen 279 HPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDA 358 (508)
T ss_pred CHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhh
Confidence 234677888889999999998888877654 2222 2333 455666679999999999999988765543
Q ss_pred CCCC----hHHHHHHHHHHHHcCCHHHHHHHHHhC---------CCCCC-HHhHHHHHHHHHhcCCHHHHHHHHHHHhc-
Q 004487 509 LRPK----KEHYASMVDILCRSGCFDEAEKLMAQM---------PFEPD-EIMWSSVINSCRIHKNLEFAKKAADQLFK- 573 (749)
Q Consensus 509 ~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~~---------~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~- 573 (749)
..++ ..+++.|...|...|++++|+++++++ ...+. ...++.|..+|.+.++.++|.++|.+...
T Consensus 359 ~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i 438 (508)
T KOG1840|consen 359 PGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDI 438 (508)
T ss_pred ccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHH
Confidence 2222 367899999999999999999999887 11222 45667788899999999999998887654
Q ss_pred ---CCC--CCCchhHHHHHHHHHHcCCchhHHHHHHHHH
Q 004487 574 ---MEK--LRDAAPYVAMSNIYAVAGQWESVSQVKKAMR 607 (749)
Q Consensus 574 ---~~~--~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 607 (749)
.+| ..-..+|..|+.+|.+.|++++|.++.+...
T Consensus 439 ~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 439 MKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred HHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 344 1345778899999999999999999988874
No 62
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.12 E-value=8.1e-07 Score=86.59 Aligned_cols=304 Identities=12% Similarity=0.025 Sum_probs=209.4
Q ss_pred CCCcchHHHHHHHHHc--cCChHHHHHHH-HHHHHhcCCcchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCCcccHHHH-
Q 004487 272 DRSQFPFSTLLSVVAN--KLDLQIGRQIH-TQTIVTTAISEVKVANSLVDMYAKCGRFEEAKEIFANLSHISTVPWTAM- 347 (749)
Q Consensus 272 ~p~~~t~~~ll~~~~~--~~~~~~a~~~~-~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l- 347 (749)
.|+..+...-+.+++. .++-..+.+.+ ..-....++.++....++.+.|...|+.++|...|++..-.|+.+...|
T Consensus 191 ~~~~dwls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD 270 (564)
T KOG1174|consen 191 PDHFDWLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMD 270 (564)
T ss_pred CCCccHHHHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhHH
Confidence 3444444444444432 23333333333 3333455788899999999999999999999999998876555543322
Q ss_pred --HHHHHhCCChhHHHHHHHHHHHCCCCcCHHhHHHHHHHhcccCcHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcC
Q 004487 348 --ISAYVQKGNLEEALNLFIEMCRANISADQATFASILRASAELASLSLGKQLHSFVIRSGFMSNVFSGSALLDMYAKSG 425 (749)
Q Consensus 348 --i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g 425 (749)
.--+.+.|++++...+...+.... .-+...|..-....-...+++.|..+-+..++..- .+...+-.-...+...|
T Consensus 271 ~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~-r~~~alilKG~lL~~~~ 348 (564)
T KOG1174|consen 271 LYAVLLGQEGGCEQDSALMDYLFAKV-KYTASHWFVHAQLLYDEKKFERALNFVEKCIDSEP-RNHEALILKGRLLIALE 348 (564)
T ss_pred HHHHHHHhccCHhhHHHHHHHHHhhh-hcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccCc-ccchHHHhccHHHHhcc
Confidence 233467888888888777775531 11222222222233445677777777776666542 23333333345677889
Q ss_pred CHHHHHHHHhhCC---CCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH-HHHh-ccCCHHHHHHHH
Q 004487 426 SLKDAIQTFKEMP---ERNIVSWNALISACAQNGDAQATLKSFEDMVQSGYQPDSVSLLSVL-SACS-HCGLIEEGLQYF 500 (749)
Q Consensus 426 ~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll-~a~~-~~g~~~~a~~~~ 500 (749)
++++|.-.|+... .-+..+|.-|+..|...|.+.+|..+-+..... ++-+..+...+. ..|. ....-++|.+++
T Consensus 349 R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ 427 (564)
T KOG1174|consen 349 RHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFA 427 (564)
T ss_pred chHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHH
Confidence 9999999998765 357889999999999999999999888776653 344555555442 2333 333457888888
Q ss_pred HHhHHhcCCCCC-hHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCC
Q 004487 501 NSMTQKYKLRPK-KEHYASMVDILCRSGCFDEAEKLMAQM-PFEPDEIMWSSVINSCRIHKNLEFAKKAADQLFKMEKLR 578 (749)
Q Consensus 501 ~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~ 578 (749)
++-. .+.|+ ....+.+..++.+.|..+++..++++. ...||....+.|....+..+.+.+|...|..++.++| .
T Consensus 428 ek~L---~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP-~ 503 (564)
T KOG1174|consen 428 EKSL---KINPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQDP-K 503 (564)
T ss_pred Hhhh---ccCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhhccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCc-c
Confidence 8665 46776 345667788999999999999999887 6678999999999999999999999999999999999 5
Q ss_pred Cchh
Q 004487 579 DAAP 582 (749)
Q Consensus 579 ~~~~ 582 (749)
|..+
T Consensus 504 ~~~s 507 (564)
T KOG1174|consen 504 SKRT 507 (564)
T ss_pred chHH
Confidence 5443
No 63
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.12 E-value=4.2e-06 Score=90.30 Aligned_cols=570 Identities=14% Similarity=0.143 Sum_probs=308.0
Q ss_pred hHHHHHHHHcCCChHHHHHHHhcC-CCCCcchHHHHHHHHHcCCChhHHHHHHHHhHhcCCCCCCcch------------
Q 004487 9 TNMLISGYVKSGNLATARELFNSM-VDRTAVSWTILIGGYSQKNQFREAFKLFVDMRTDGGSDPDYVT------------ 75 (749)
Q Consensus 9 ~~~ll~~~~~~g~~~~A~~~f~~~-~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~g~~p~~~~------------ 75 (749)
-+..+..|+.+|.++++.-...+. ..|| |-.+|+...+ -.++.+.++...|.+..+...|...
T Consensus 484 p~KVi~cfAE~Gqf~KiilY~kKvGyTPd---ymflLq~l~r-~sPD~~~qFa~~l~Q~~~~~~die~I~DlFme~N~iQ 559 (1666)
T KOG0985|consen 484 PAKVIQCFAETGQFKKIILYAKKVGYTPD---YMFLLQQLKR-SSPDQALQFAMMLVQDEEPLADIEQIVDLFMELNLIQ 559 (1666)
T ss_pred cHHHHHHHHHhcchhHHHHHHHHcCCCcc---HHHHHHHHHc-cChhHHHHHHHHhhccCCCcccHHHHHHHHHHHHhhh
Confidence 466788999999999988777665 3344 3445565555 5677788777777664221112211
Q ss_pred --HHHHHHhcCCCCChHHHH---HHHHHHHHhCCC----------CchhHHHHHHHHhHcCCChhHHHHHHccCCC--CC
Q 004487 76 --FATLLSGCSEPDTANELI---QVHADIIKFGYN----------SILIICNSLVDSYCKIRCLDLARRVFKEMPQ--KD 138 (749)
Q Consensus 76 --~~~ll~~~~~~~~~~~a~---~~~~~~~~~g~~----------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~~ 138 (749)
-..+|.+ .+...++.+. .+++.-...+++ .+.+-+..+...|.+.|-...|++.+..+.. +.
T Consensus 560 q~TSFLLda-LK~~~Pd~g~LQTrLLE~NL~~aPqVADAILgN~mFtHyDra~IAqLCEKAGL~qraLehytDl~DIKR~ 638 (1666)
T KOG0985|consen 560 QCTSFLLDA-LKLNSPDEGHLQTRLLEMNLVHAPQVADAILGNDMFTHYDRAEIAQLCEKAGLLQRALEHYTDLYDIKRV 638 (1666)
T ss_pred hhHHHHHHH-hcCCChhhhhHHHHHHHHHhccchHHHHHHHhccccccccHHHHHHHHHhcchHHHHHHhcccHHHHHHH
Confidence 1111222 1222232221 222222222211 1112255667778888999999988877654 21
Q ss_pred cchHH----HHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHhCCCChHHHHHHHHHHHH-----------c
Q 004487 139 SVSFN----ALITGFAKEGLNEEAIKLFVEMQHLGFKPSDFTFAAALSAGVGLADIALGRQVHAFVVK-----------T 203 (749)
Q Consensus 139 ~~~~~----~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~-----------~ 203 (749)
++.-+ --+..|.-.-.++.+++.++.|...+++-+..+...+..-+...-..+...++|+.... -
T Consensus 639 vVhth~L~pEwLv~yFg~lsve~s~eclkaml~~NirqNlQi~VQvatky~eqlg~~~li~lFE~fks~eGL~yfLgSiv 718 (1666)
T KOG0985|consen 639 VVHTHLLNPEWLVNYFGSLSVEDSLECLKAMLSANIRQNLQIVVQVATKYHEQLGAQALIELFESFKSYEGLYYFLGSIV 718 (1666)
T ss_pred HHHhccCCHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCHHHHHHHHHhhccchhHHHHHHHHh
Confidence 11111 01234555567889999999999988888877766666555544333444444443322 1
Q ss_pred CCCCChhHHHHHHHHHHcCCChHHHHHHHccCCC---------------C----------------CcchH------HHH
Q 004487 204 NFVENVFVANALLDLYSKHDCVVEARKLFGEMPE---------------V----------------DGVSY------NVM 246 (749)
Q Consensus 204 g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~---------------~----------------~~~~~------~~l 246 (749)
++..|..+.-..|.+.++.|++.+.+++-++-.- . |.+.| --.
T Consensus 719 n~seDpevh~KYIqAA~kt~QikEvERicresn~YdpErvKNfLkeAkL~DqlPLiiVCDRf~fVhdlvlYLyrnn~~ky 798 (1666)
T KOG0985|consen 719 NFSEDPEVHFKYIQAACKTGQIKEVERICRESNCYDPERVKNFLKEAKLTDQLPLIIVCDRFDFVHDLVLYLYRNNLQKY 798 (1666)
T ss_pred ccccCchHHHHHHHHHHhhccHHHHHHHHhccccCCHHHHHHHHHhccccccCceEEEecccccHHHHHHHHHHhhHHHH
Confidence 2455666677889999999999998888765421 1 11111 112
Q ss_pred HHHHHhcCChhHHHHHHHHHHHCCCCC-----------CcchHHHHHHHHHccCChHHHHHHHHHHHHhcCCcchhHHHH
Q 004487 247 ITCYAWNEQYKESLKLFRELQFTRFDR-----------SQFPFSTLLSVVANKLDLQIGRQIHTQTIVTTAISEVKVANS 315 (749)
Q Consensus 247 i~~~~~~g~~~~A~~~~~~m~~~~~~p-----------~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ 315 (749)
|..|.+.=++...-.+...+..-.... ..+...-+..-+.+.+.+..-...++..+..| ..|+.++|+
T Consensus 799 IE~yVQkvNps~~p~VvG~LLD~dC~E~~ik~Li~~v~gq~~~deLv~EvEkRNRLklLlp~LE~~i~eG-~~d~a~hnA 877 (1666)
T KOG0985|consen 799 IEIYVQKVNPSRTPQVVGALLDVDCSEDFIKNLILSVRGQFPVDELVEEVEKRNRLKLLLPWLESLIQEG-SQDPATHNA 877 (1666)
T ss_pred HHHHHhhcCCcccchhhhhhhcCCCcHHHHHHHHHHHhccCChHHHHHHHHhhhhHHHHHHHHHHHHhcc-CcchHHHhh
Confidence 344444433333222222222111000 01111122222333444444445555555555 446777888
Q ss_pred HHHHHHhcCCHHHH----------HHHHHhcCCCCccc-------------------HHHHHHH----HHhCCCh---hH
Q 004487 316 LVDMYAKCGRFEEA----------KEIFANLSHISTVP-------------------WTAMISA----YVQKGNL---EE 359 (749)
Q Consensus 316 li~~~~~~g~~~~A----------~~~~~~~~~~~~~~-------------------~~~li~~----~~~~g~~---~~ 359 (749)
|...|...++-.+- .-+=+-.+++|+.. -|+|... +....+. .+
T Consensus 878 laKIyIDSNNnPE~fLkeN~yYDs~vVGkYCEKRDP~lA~vaYerGqcD~elI~vcNeNSlfK~~aRYlv~R~D~~LW~~ 957 (1666)
T KOG0985|consen 878 LAKIYIDSNNNPERFLKENPYYDSKVVGKYCEKRDPHLACVAYERGQCDLELINVCNENSLFKSQARYLVERSDPDLWAK 957 (1666)
T ss_pred hhheeecCCCChHHhcccCCcchhhHHhhhhcccCCceEEEeecccCCcHHHHHhcCchhHHHHHHHHHHhccChHHHHH
Confidence 77777654331110 00000001111100 0111111 1111111 11
Q ss_pred H--------HHHHHHHHHCCCC--cCHHhHHHHHHHhcccCcHHHHHHHHHHHHHh--CCCCchhHHHHHH---------
Q 004487 360 A--------LNLFIEMCRANIS--ADQATFASILRASAELASLSLGKQLHSFVIRS--GFMSNVFSGSALL--------- 418 (749)
Q Consensus 360 A--------~~l~~~m~~~g~~--p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~li--------- 418 (749)
. ..+.++....++. -|+...+..+.++...+-..+-.++++.++-. .+..+...-|.|+
T Consensus 958 VL~e~n~~rRqLiDqVv~tal~E~~dPe~vS~tVkAfMtadLp~eLIELLEKIvL~~S~Fse~~nLQnLLiLtAikad~t 1037 (1666)
T KOG0985|consen 958 VLNEENPYRRQLIDQVVQTALPETQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSENRNLQNLLILTAIKADRT 1037 (1666)
T ss_pred HHhccChHHHHHHHHHHHhcCCccCChHHHHHHHHHHHhcCCcHHHHHHHHHHhcCCcccccchhhhhhHHHHHhhcChH
Confidence 1 1122222222211 12223333333333333333333333322211 0111111111111
Q ss_pred ------------------HHHHhcCCHHHHHHHHhhCCC-------------------------CCcchHHHHHHHHHhc
Q 004487 419 ------------------DMYAKSGSLKDAIQTFKEMPE-------------------------RNIVSWNALISACAQN 455 (749)
Q Consensus 419 ------------------~~y~~~g~~~~A~~~~~~~~~-------------------------~~~~~~~~li~~~~~~ 455 (749)
......+-+++|..+|+.... ..+..|..+..+-.+.
T Consensus 1038 rVm~YI~rLdnyDa~~ia~iai~~~LyEEAF~ifkkf~~n~~A~~VLie~i~~ldRA~efAe~~n~p~vWsqlakAQL~~ 1117 (1666)
T KOG0985|consen 1038 RVMEYINRLDNYDAPDIAEIAIENQLYEEAFAIFKKFDMNVSAIQVLIENIGSLDRAYEFAERCNEPAVWSQLAKAQLQG 1117 (1666)
T ss_pred HHHHHHHHhccCCchhHHHHHhhhhHHHHHHHHHHHhcccHHHHHHHHHHhhhHHHHHHHHHhhCChHHHHHHHHHHHhc
Confidence 111222334455555543320 2345799999999999
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHH
Q 004487 456 GDAQATLKSFEDMVQSGYQPDSVSLLSVLSACSHCGLIEEGLQYFNSMTQKYKLRPKKEHYASMVDILCRSGCFDEAEKL 535 (749)
Q Consensus 456 g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~ 535 (749)
|...+|++-|-+. -|...|..++.++++.|.+++-.+++...+++ .-+|..+ +.|+-+|++.+++.|-+++
T Consensus 1118 ~~v~dAieSyika------dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk-~~E~~id--~eLi~AyAkt~rl~elE~f 1188 (1666)
T KOG0985|consen 1118 GLVKDAIESYIKA------DDPSNYLEVIDVASRTGKYEDLVKYLLMARKK-VREPYID--SELIFAYAKTNRLTELEEF 1188 (1666)
T ss_pred CchHHHHHHHHhc------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHh-hcCccch--HHHHHHHHHhchHHHHHHH
Confidence 9999998877542 35668999999999999999999999766554 6666655 4689999999999998888
Q ss_pred HHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHcCCchhHHHHHHHH
Q 004487 536 MAQMPFEPDEIMWSSVINSCRIHKNLEFAKKAADQLFKMEKLRDAAPYVAMSNIYAVAGQWESVSQVKKAM 606 (749)
Q Consensus 536 ~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 606 (749)
+. -|+..-......-|...|.++.|.-+|. +...|..|+..+...|.+..|...-++.
T Consensus 1189 i~----gpN~A~i~~vGdrcf~~~~y~aAkl~y~---------~vSN~a~La~TLV~LgeyQ~AVD~aRKA 1246 (1666)
T KOG0985|consen 1189 IA----GPNVANIQQVGDRCFEEKMYEAAKLLYS---------NVSNFAKLASTLVYLGEYQGAVDAARKA 1246 (1666)
T ss_pred hc----CCCchhHHHHhHHHhhhhhhHHHHHHHH---------HhhhHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 85 3777777888899999999999988874 5667778888888888888887665544
No 64
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.12 E-value=4.9e-08 Score=92.00 Aligned_cols=220 Identities=10% Similarity=0.131 Sum_probs=133.1
Q ss_pred CCChhHHHHHHHHHHHCCCCCC-hhhHHHHHHHHhCCCChHHHHHHHHHHHHcCCCC---ChhHHHHHHHHHHcCCChHH
Q 004487 152 EGLNEEAIKLFVEMQHLGFKPS-DFTFAAALSAGVGLADIALGRQVHAFVVKTNFVE---NVFVANALLDLYSKHDCVVE 227 (749)
Q Consensus 152 ~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~---~~~~~~~Li~~y~~~g~~~~ 227 (749)
+.++++|+++|-+|.+. .|. ..+-.++-+-+.+.|..+.|..+|+.+.++.--+ -....-.|..-|.+.|-+|.
T Consensus 48 s~Q~dKAvdlF~e~l~~--d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DR 125 (389)
T COG2956 48 SNQPDKAVDLFLEMLQE--DPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDR 125 (389)
T ss_pred hcCcchHHHHHHHHHhc--CchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhH
Confidence 46777777777777763 221 2222344445566677777777777766543211 12344567777888999999
Q ss_pred HHHHHccCCCCCcc---hHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCcchHHHHHHHHHccCChHHHHHHHHHHHHh
Q 004487 228 ARKLFGEMPEVDGV---SYNVMITCYAWNEQYKESLKLFRELQFTRFDRSQFPFSTLLSVVANKLDLQIGRQIHTQTIVT 304 (749)
Q Consensus 228 A~~~f~~~~~~~~~---~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~ 304 (749)
|+.+|..+.+.+.. +.-.|+..|-+..+|++|++.-+++...+..+..+-..
T Consensus 126 AE~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIA------------------------- 180 (389)
T COG2956 126 AEDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIA------------------------- 180 (389)
T ss_pred HHHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHH-------------------------
Confidence 99999888774443 45567888999999999999998887766554433221
Q ss_pred cCCcchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCCccc---HHHHHHHHHhCCChhHHHHHHHHHHHCCCCcCHHhHHH
Q 004487 305 TAISEVKVANSLVDMYAKCGRFEEAKEIFANLSHISTVP---WTAMISAYVQKGNLEEALNLFIEMCRANISADQATFAS 381 (749)
Q Consensus 305 g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ 381 (749)
..|..|...+....+.+.|...+.+..+.|... --.+-..+...|+++.|.+.++...+.+..--..+...
T Consensus 181 ------qfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~ 254 (389)
T COG2956 181 ------QFYCELAQQALASSDVDRARELLKKALQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEM 254 (389)
T ss_pred ------HHHHHHHHHHhhhhhHHHHHHHHHHHHhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHH
Confidence 123344445555666777777776665433332 22233556677777777777777766543333334444
Q ss_pred HHHHhcccCcHHHHHHHHHHHHH
Q 004487 382 ILRASAELASLSLGKQLHSFVIR 404 (749)
Q Consensus 382 ll~~~~~~~~~~~a~~~~~~~~~ 404 (749)
+..+|.+.|+.+++...+..+.+
T Consensus 255 L~~~Y~~lg~~~~~~~fL~~~~~ 277 (389)
T COG2956 255 LYECYAQLGKPAEGLNFLRRAME 277 (389)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHH
Confidence 44555555555555554444443
No 65
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=99.07 E-value=1.2e-06 Score=91.03 Aligned_cols=491 Identities=15% Similarity=0.136 Sum_probs=294.2
Q ss_pred CCChHHHHHHHhcCCC-CCcc-hHHHHHHHHHcCCChhHHHHHHHHhHhcCCCCCCcchHHHHHHhcCCCCChHHHHHHH
Q 004487 19 SGNLATARELFNSMVD-RTAV-SWTILIGGYSQKNQFREAFKLFVDMRTDGGSDPDYVTFATLLSGCSEPDTANELIQVH 96 (749)
Q Consensus 19 ~g~~~~A~~~f~~~~~-~~~~-~~~~li~~~~~~g~~~~a~~l~~~m~~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~ 96 (749)
.|+++.|..+++.... |+.. .|..+...-...|+..-|.+.|. ..|++..++.+|
T Consensus 457 ~~df~ra~afles~~~~~da~amw~~laelale~~nl~iaercfa-----------------------ai~dvak~r~lh 513 (1636)
T KOG3616|consen 457 DGDFDRATAFLESLEMGPDAEAMWIRLAELALEAGNLFIAERCFA-----------------------AIGDVAKARFLH 513 (1636)
T ss_pred cCchHHHHHHHHhhccCccHHHHHHHHHHHHHHhccchHHHHHHH-----------------------HHHHHHHHHHHH
Confidence 4566666666665532 3333 35554444444454444444333 334555666665
Q ss_pred HHHH-------HhC-CCCchhHHHHHHHHhHcCCChhHHHHHHccCCCCCcchHHHHHHHHHhCCChhHHHHHHHHHHHC
Q 004487 97 ADII-------KFG-YNSILIICNSLVDSYCKIRCLDLARRVFKEMPQKDSVSFNALITGFAKEGLNEEAIKLFVEMQHL 168 (749)
Q Consensus 97 ~~~~-------~~g-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 168 (749)
+... +.| -..+.+-..+++.++. .++.+|+.+|-+-. + -..-|..|....++++|+.+-+. .
T Consensus 514 d~~eiadeas~~~ggdgt~fykvra~lail~--kkfk~ae~ifleqn--~---te~aigmy~~lhkwde~i~lae~---~ 583 (1636)
T KOG3616|consen 514 DILEIADEASIEIGGDGTDFYKVRAMLAILE--KKFKEAEMIFLEQN--A---TEEAIGMYQELHKWDEAIALAEA---K 583 (1636)
T ss_pred HHHHHHHHHhHhhCCCCchHHHHHHHHHHHH--hhhhHHHHHHHhcc--c---HHHHHHHHHHHHhHHHHHHHHHh---c
Confidence 5432 122 1223333344444433 46778888775421 1 22346666677778888877543 2
Q ss_pred CCCCChhhHHHHHHHHhCCCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHcCCChHHHHHHHccC--CCCCcchHHHH
Q 004487 169 GFKPSDFTFAAALSAGVGLADIALGRQVHAFVVKTNFVENVFVANALLDLYSKHDCVVEARKLFGEM--PEVDGVSYNVM 246 (749)
Q Consensus 169 g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~--~~~~~~~~~~l 246 (749)
|.+.-...-.+-++++...|+-+.|-++- .+....-+-|..|.|.|....|.+.-..- ...|......+
T Consensus 584 ~~p~~eklk~sy~q~l~dt~qd~ka~elk---------~sdgd~laaiqlyika~~p~~a~~~a~n~~~l~~de~il~~i 654 (1636)
T KOG3616|consen 584 GHPALEKLKRSYLQALMDTGQDEKAAELK---------ESDGDGLAAIQLYIKAGKPAKAARAALNDEELLADEEILEHI 654 (1636)
T ss_pred CChHHHHHHHHHHHHHHhcCchhhhhhhc---------cccCccHHHHHHHHHcCCchHHHHhhcCHHHhhccHHHHHHH
Confidence 22111122233445555555544443321 11222345688899999888877664322 22455556666
Q ss_pred HHHHHhcCChhHHHHHHHHHHHCCCCCCcchHHHHHHHHHccCChHHHHHHHHHHHHhcCCcchh-HHHHHHHHHHhcCC
Q 004487 247 ITCYAWNEQYKESLKLFRELQFTRFDRSQFPFSTLLSVVANKLDLQIGRQIHTQTIVTTAISEVK-VANSLVDMYAKCGR 325 (749)
Q Consensus 247 i~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~-~~~~li~~~~~~g~ 325 (749)
..++.+...+++|-++|+++.. +...+..+.+...+..|.++-... ++..+. .-..-.+-+...|+
T Consensus 655 a~alik~elydkagdlfeki~d---------~dkale~fkkgdaf~kaielarfa----fp~evv~lee~wg~hl~~~~q 721 (1636)
T KOG3616|consen 655 AAALIKGELYDKAGDLFEKIHD---------FDKALECFKKGDAFGKAIELARFA----FPEEVVKLEEAWGDHLEQIGQ 721 (1636)
T ss_pred HHHHHhhHHHHhhhhHHHHhhC---------HHHHHHHHHcccHHHHHHHHHHhh----CcHHHhhHHHHHhHHHHHHHh
Confidence 6777777778888888887642 222333333333334444433222 121111 11223334456677
Q ss_pred HHHHHHHHHhcCCCCcccHHHHHHHHHhCCChhHHHHHHHHHHHCCCCcCHHhHHHHHHHhcccCcHHHHHHHHHHHHHh
Q 004487 326 FEEAKEIFANLSHISTVPWTAMISAYVQKGNLEEALNLFIEMCRANISADQATFASILRASAELASLSLGKQLHSFVIRS 405 (749)
Q Consensus 326 ~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~ 405 (749)
++.|...|-+... .-.-|.+-....++.+|+.+++.++.... -..-|..+..-|+..|+++.|++++-..
T Consensus 722 ~daainhfiea~~-----~~kaieaai~akew~kai~ildniqdqk~--~s~yy~~iadhyan~~dfe~ae~lf~e~--- 791 (1636)
T KOG3616|consen 722 LDAAINHFIEANC-----LIKAIEAAIGAKEWKKAISILDNIQDQKT--ASGYYGEIADHYANKGDFEIAEELFTEA--- 791 (1636)
T ss_pred HHHHHHHHHHhhh-----HHHHHHHHhhhhhhhhhHhHHHHhhhhcc--ccccchHHHHHhccchhHHHHHHHHHhc---
Confidence 8888777754321 12234566778899999999998887532 3345667778899999999999988532
Q ss_pred CCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCCC--CcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 004487 406 GFMSNVFSGSALLDMYAKSGSLKDAIQTFKEMPER--NIVSWNALISACAQNGDAQATLKSFEDMVQSGYQPDSVSLLSV 483 (749)
Q Consensus 406 ~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l 483 (749)
..++--|+||.+.|++++|.++-.+...| .+.+|-+-..-+-.+|++.+|.++|-... .|+. .
T Consensus 792 ------~~~~dai~my~k~~kw~da~kla~e~~~~e~t~~~yiakaedldehgkf~eaeqlyiti~----~p~~-----a 856 (1636)
T KOG3616|consen 792 ------DLFKDAIDMYGKAGKWEDAFKLAEECHGPEATISLYIAKAEDLDEHGKFAEAEQLYITIG----EPDK-----A 856 (1636)
T ss_pred ------chhHHHHHHHhccccHHHHHHHHHHhcCchhHHHHHHHhHHhHHhhcchhhhhheeEEcc----CchH-----H
Confidence 23567799999999999999998877654 45566666667788999999998886542 3553 3
Q ss_pred HHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHH
Q 004487 484 LSACSHCGLIEEGLQYFNSMTQKYKLRPKKEHYASMVDILCRSGCFDEAEKLMAQMPFEPDEIMWSSVINSCRIHKNLEF 563 (749)
Q Consensus 484 l~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~ 563 (749)
+..|-+.|..++.+++..+-.- ..-.++.-.+..-|...|++.+|++-|-+.+ -|.+.++.|...+-+++
T Consensus 857 iqmydk~~~~ddmirlv~k~h~----d~l~dt~~~f~~e~e~~g~lkaae~~flea~------d~kaavnmyk~s~lw~d 926 (1636)
T KOG3616|consen 857 IQMYDKHGLDDDMIRLVEKHHG----DHLHDTHKHFAKELEAEGDLKAAEEHFLEAG------DFKAAVNMYKASELWED 926 (1636)
T ss_pred HHHHHhhCcchHHHHHHHHhCh----hhhhHHHHHHHHHHHhccChhHHHHHHHhhh------hHHHHHHHhhhhhhHHH
Confidence 5678889999998887754321 1222344556777888999999999887654 47778888888888887
Q ss_pred HHHHHHHHhcCCCCCCchhHHHHHHHHHHcCCchhHHHHHHH
Q 004487 564 AKKAADQLFKMEKLRDAAPYVAMSNIYAVAGQWESVSQVKKA 605 (749)
Q Consensus 564 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 605 (749)
|-++.+ ..+. .|..-.+...++-+-.| +.|.+++++
T Consensus 927 ayriak---tegg-~n~~k~v~flwaksigg--daavkllnk 962 (1636)
T KOG3616|consen 927 AYRIAK---TEGG-ANAEKHVAFLWAKSIGG--DAAVKLLNK 962 (1636)
T ss_pred HHHHHh---cccc-ccHHHHHHHHHHHhhCc--HHHHHHHHh
Confidence 766654 3333 45555555555544444 577777776
No 66
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.06 E-value=1.1e-06 Score=87.69 Aligned_cols=218 Identities=12% Similarity=0.083 Sum_probs=168.7
Q ss_pred HhCCChhHHHHHHHHHHHCCCCcCHHhHHHHHHHhcccCcHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHH
Q 004487 352 VQKGNLEEALNLFIEMCRANISADQATFASILRASAELASLSLGKQLHSFVIRSGFMSNVFSGSALLDMYAKSGSLKDAI 431 (749)
Q Consensus 352 ~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~ 431 (749)
.-.|+.-.|...|+..+.....++.. |.-+-..+....+.++..+.|....+.+. -++.+|.--..++.-.+++++|.
T Consensus 337 fL~g~~~~a~~d~~~~I~l~~~~~~l-yI~~a~~y~d~~~~~~~~~~F~~A~~ldp-~n~dvYyHRgQm~flL~q~e~A~ 414 (606)
T KOG0547|consen 337 FLKGDSLGAQEDFDAAIKLDPAFNSL-YIKRAAAYADENQSEKMWKDFNKAEDLDP-ENPDVYYHRGQMRFLLQQYEEAI 414 (606)
T ss_pred hhcCCchhhhhhHHHHHhcCcccchH-HHHHHHHHhhhhccHHHHHHHHHHHhcCC-CCCchhHhHHHHHHHHHHHHHHH
Confidence 34688889999999988765444332 66666678888888999999988888763 35667777778888889999999
Q ss_pred HHHhhCCC---CCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcC
Q 004487 432 QTFKEMPE---RNIVSWNALISACAQNGDAQATLKSFEDMVQSGYQPDSVSLLSVLSACSHCGLIEEGLQYFNSMTQKYK 508 (749)
Q Consensus 432 ~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~ 508 (749)
.=|++... .++..|-.+-.+.-+.++++++...|++.+.. ++--...|+.....+...+++++|.+.|+....
T Consensus 415 aDF~Kai~L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~--- 490 (606)
T KOG0547|consen 415 ADFQKAISLDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIE--- 490 (606)
T ss_pred HHHHHHhhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHh---
Confidence 99998874 34566767777777888999999999999884 444455888889999999999999999998773
Q ss_pred CCCCh---------HHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC-HHhHHHHHHHHHhcCCHHHHHHHHHHHhcCCC
Q 004487 509 LRPKK---------EHYASMVDILCRSGCFDEAEKLMAQM-PFEPD-EIMWSSVINSCRIHKNLEFAKKAADQLFKMEK 576 (749)
Q Consensus 509 ~~p~~---------~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~ 576 (749)
+.|+. .+.-+++- +.-.+++.+|.+++++. .+.|. ...+.+|...-.+.|++++|+++|++...+..
T Consensus 491 LE~~~~~~~v~~~plV~Ka~l~-~qwk~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa~lAr 568 (606)
T KOG0547|consen 491 LEPREHLIIVNAAPLVHKALLV-LQWKEDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKSAQLAR 568 (606)
T ss_pred hccccccccccchhhhhhhHhh-hchhhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 45541 11112221 22458999999999998 66674 77889999999999999999999999877654
No 67
>PRK12370 invasion protein regulator; Provisional
Probab=99.05 E-value=4.3e-08 Score=107.78 Aligned_cols=244 Identities=11% Similarity=0.051 Sum_probs=174.7
Q ss_pred ChhHHHHHHHHHHHCCCCcCHH-hHHHHHHHhc---------ccCcHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcC
Q 004487 356 NLEEALNLFIEMCRANISADQA-TFASILRASA---------ELASLSLGKQLHSFVIRSGFMSNVFSGSALLDMYAKSG 425 (749)
Q Consensus 356 ~~~~A~~l~~~m~~~g~~p~~~-t~~~ll~~~~---------~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g 425 (749)
..++|+.+|++..+. .|+.. .+..+..++. ..++.+.|...++.+++.. +.+...+..+...+...|
T Consensus 276 ~~~~A~~~~~~Al~l--dP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ld-P~~~~a~~~lg~~~~~~g 352 (553)
T PRK12370 276 SLQQALKLLTQCVNM--SPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELD-HNNPQALGLLGLINTIHS 352 (553)
T ss_pred HHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcc
Confidence 346777777777653 45432 3333322221 3345778888888877765 335677778888899999
Q ss_pred CHHHHHHHHhhCCC--C-CcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHhccCCHHHHHHHHH
Q 004487 426 SLKDAIQTFKEMPE--R-NIVSWNALISACAQNGDAQATLKSFEDMVQSGYQPDSV-SLLSVLSACSHCGLIEEGLQYFN 501 (749)
Q Consensus 426 ~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~ 501 (749)
++++|...|++..+ | +...|..+...+...|++++|+..+++..+ +.|+.. .+..++..+...|++++|...++
T Consensus 353 ~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~--l~P~~~~~~~~~~~~~~~~g~~eeA~~~~~ 430 (553)
T PRK12370 353 EYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLK--LDPTRAAAGITKLWITYYHTGIDDAIRLGD 430 (553)
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCCCChhhHHHHHHHHHhccCHHHHHHHHH
Confidence 99999999998763 3 355788888899999999999999999998 556643 33344555667899999999998
Q ss_pred HhHHhcCCCC-ChHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC-HHhHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCC
Q 004487 502 SMTQKYKLRP-KKEHYASMVDILCRSGCFDEAEKLMAQM-PFEPD-EIMWSSVINSCRIHKNLEFAKKAADQLFKMEKLR 578 (749)
Q Consensus 502 ~m~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~ 578 (749)
+.... ..| +...+..+..+|...|++++|...+++. +..|+ ...++.+...+...| +.|...++++++... .
T Consensus 431 ~~l~~--~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~~~-~ 505 (553)
T PRK12370 431 ELRSQ--HLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQNS--ERALPTIREFLESEQ-R 505 (553)
T ss_pred HHHHh--ccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhccH--HHHHHHHHHHHHHhh-H
Confidence 87753 234 3455777888899999999999999987 55555 444555555667777 488888888777554 3
Q ss_pred CchhHHHHHHHHHHcCCchhHHHHHHHHHhCC
Q 004487 579 DAAPYVAMSNIYAVAGQWESVSQVKKAMRERG 610 (749)
Q Consensus 579 ~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 610 (749)
....+..+..+|+-.|+-+.+..+ +++.+.+
T Consensus 506 ~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~ 536 (553)
T PRK12370 506 IDNNPGLLPLVLVAHGEAIAEKMW-NKFKNED 536 (553)
T ss_pred hhcCchHHHHHHHHHhhhHHHHHH-HHhhccc
Confidence 344444488888889998888777 7776654
No 68
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.01 E-value=2.4e-06 Score=81.67 Aligned_cols=151 Identities=19% Similarity=0.164 Sum_probs=95.5
Q ss_pred HHHHHHHHhhCCC-----CCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHH
Q 004487 427 LKDAIQTFKEMPE-----RNIVSWNALISACAQNGDAQATLKSFEDMVQSGYQPDSVSLLSVLSACSHCGLIEEGLQYFN 501 (749)
Q Consensus 427 ~~~A~~~~~~~~~-----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~ 501 (749)
+.-|.+.|+-..+ ..+.--.+|.+.+.-..++++.+-.+.....- +.-|...-..+..|.+..|.+.+|.++|-
T Consensus 339 lKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sY-F~NdD~Fn~N~AQAk~atgny~eaEelf~ 417 (557)
T KOG3785|consen 339 LKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESY-FTNDDDFNLNLAQAKLATGNYVEAEELFI 417 (557)
T ss_pred HHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHH-hcCcchhhhHHHHHHHHhcChHHHHHHHh
Confidence 4445555554332 22333455666666666677777777766653 33333333456678888888888888886
Q ss_pred HhHHhcCCC-CChHHHHH-HHHHHHHcCCHHHHHHHHHhCCCCCCHHhHHHHH-HHHHhcCCHHHHHHHHHHHhcCCCCC
Q 004487 502 SMTQKYKLR-PKKEHYAS-MVDILCRSGCFDEAEKLMAQMPFEPDEIMWSSVI-NSCRIHKNLEFAKKAADQLFKMEKLR 578 (749)
Q Consensus 502 ~m~~~~~~~-p~~~~~~~-li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll-~~~~~~g~~~~a~~~~~~~~~~~~~~ 578 (749)
.+. +.+ .+..+|.+ |...|.+++..+-|.+++-++.-..+..+.-.+| .-|.+.+.+=-|-++|+.+-.++|
T Consensus 418 ~is---~~~ikn~~~Y~s~LArCyi~nkkP~lAW~~~lk~~t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~lDP-- 492 (557)
T KOG3785|consen 418 RIS---GPEIKNKILYKSMLARCYIRNKKPQLAWDMMLKTNTPSERFSLLQLIANDCYKANEFYYAAKAFDELEILDP-- 492 (557)
T ss_pred hhc---ChhhhhhHHHHHHHHHHHHhcCCchHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHccCC--
Confidence 654 222 34455554 4577888888888888888875444455444444 458888888888888888888887
Q ss_pred CchhH
Q 004487 579 DAAPY 583 (749)
Q Consensus 579 ~~~~~ 583 (749)
++..|
T Consensus 493 ~pEnW 497 (557)
T KOG3785|consen 493 TPENW 497 (557)
T ss_pred Ccccc
Confidence 44444
No 69
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.00 E-value=5.2e-08 Score=97.88 Aligned_cols=211 Identities=13% Similarity=0.076 Sum_probs=150.1
Q ss_pred CcHHHHHHHHHHHHHhC-CCC--chhHHHHHHHHHHhcCCHHHHHHHHhhCCC---CCcchHHHHHHHHHhcCCHHHHHH
Q 004487 390 ASLSLGKQLHSFVIRSG-FMS--NVFSGSALLDMYAKSGSLKDAIQTFKEMPE---RNIVSWNALISACAQNGDAQATLK 463 (749)
Q Consensus 390 ~~~~~a~~~~~~~~~~~-~~~--~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~ 463 (749)
+..+.+..-+..++... ..| ....+..+...|.+.|+.++|...|++..+ .+...|+.+...+...|++++|++
T Consensus 40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~ 119 (296)
T PRK11189 40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYE 119 (296)
T ss_pred hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 34455555555555432 222 245577788889999999999999988763 456789999999999999999999
Q ss_pred HHHHHHHCCCCCCH-HHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHhC--C
Q 004487 464 SFEDMVQSGYQPDS-VSLLSVLSACSHCGLIEEGLQYFNSMTQKYKLRPKKEHYASMVDILCRSGCFDEAEKLMAQM--P 540 (749)
Q Consensus 464 ~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~--~ 540 (749)
.|++..+ +.|+. .++..+..++...|++++|.+.|+...+ ..|+..........+...++.++|.+.+++. .
T Consensus 120 ~~~~Al~--l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~---~~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~ 194 (296)
T PRK11189 120 AFDSVLE--LDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQ---DDPNDPYRALWLYLAESKLDPKQAKENLKQRYEK 194 (296)
T ss_pred HHHHHHH--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHccCCHHHHHHHHHHHHhh
Confidence 9999998 66764 5778888889999999999999998875 3565432222233455678899999999665 2
Q ss_pred CCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHh-------cCCCCCCchhHHHHHHHHHHcCCchhHHHHHHHHHhCC
Q 004487 541 FEPDEIMWSSVINSCRIHKNLEFAKKAADQLF-------KMEKLRDAAPYVAMSNIYAVAGQWESVSQVKKAMRERG 610 (749)
Q Consensus 541 ~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~-------~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 610 (749)
..|+. |.. .......|+...+ ..++.+. ++.| ....+|..++.+|...|++++|...+++..+..
T Consensus 195 ~~~~~--~~~-~~~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~-~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~ 266 (296)
T PRK11189 195 LDKEQ--WGW-NIVEFYLGKISEE-TLMERLKAGATDNTELAE-RLCETYFYLAKYYLSLGDLDEAAALFKLALANN 266 (296)
T ss_pred CCccc--cHH-HHHHHHccCCCHH-HHHHHHHhcCCCcHHHHH-HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 33333 331 1222334555443 2444443 3444 556789999999999999999999999987654
No 70
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.00 E-value=1.3e-06 Score=88.84 Aligned_cols=281 Identities=14% Similarity=0.092 Sum_probs=149.5
Q ss_pred cchHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCcchHHHHHHHHHccCChHHHHHHHHHHHHhcCCcchhHHHHHHHH
Q 004487 240 GVSYNVMITCYAWNEQYKESLKLFRELQFTRFDRSQFPFSTLLSVVANKLDLQIGRQIHTQTIVTTAISEVKVANSLVDM 319 (749)
Q Consensus 240 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~ 319 (749)
+...-.-..-+...+++.+..++++...+.. ++....+..=|.++...|+...-.-+-..+++. .+....+|-++.-.
T Consensus 244 ~dll~~~ad~~y~~c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~-yP~~a~sW~aVg~Y 321 (611)
T KOG1173|consen 244 LDLLAEKADRLYYGCRFKECLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDL-YPSKALSWFAVGCY 321 (611)
T ss_pred HHHHHHHHHHHHHcChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHHHh-CCCCCcchhhHHHH
Confidence 3333344445556666667776666664431 222222322333333444433322222222222 24455566666667
Q ss_pred HHhcCCHHHHHHHHHhcCCCCc---ccHHHHHHHHHhCCChhHHHHHHHHHHHCCCCcCHHhHHHHHHHhcccCcHHHHH
Q 004487 320 YAKCGRFEEAKEIFANLSHIST---VPWTAMISAYVQKGNLEEALNLFIEMCRANISADQATFASILRASAELASLSLGK 396 (749)
Q Consensus 320 ~~~~g~~~~A~~~~~~~~~~~~---~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~ 396 (749)
|.-.|...+|++.|......|. ..|-....+|+-.|..++|+..+...-+.- +-...-+.-+---|.+.+.++.|.
T Consensus 322 Yl~i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~-~G~hlP~LYlgmey~~t~n~kLAe 400 (611)
T KOG1173|consen 322 YLMIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLM-PGCHLPSLYLGMEYMRTNNLKLAE 400 (611)
T ss_pred HHHhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhc-cCCcchHHHHHHHHHHhccHHHHH
Confidence 7777888888888877654332 338888888888888888888776665421 111111111222344455555555
Q ss_pred HHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHC----C
Q 004487 397 QLHSFVIRSGFMSNVFSGSALLDMYAKSGSLKDAIQTFKEMPERNIVSWNALISACAQNGDAQATLKSFEDMVQS----G 472 (749)
Q Consensus 397 ~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g 472 (749)
+.+.+..... +.|+.+.+-+.-+..+.+ .+.+|..+|+..+.. +
T Consensus 401 ~Ff~~A~ai~-P~Dplv~~Elgvvay~~~-------------------------------~y~~A~~~f~~~l~~ik~~~ 448 (611)
T KOG1173|consen 401 KFFKQALAIA-PSDPLVLHELGVVAYTYE-------------------------------EYPEALKYFQKALEVIKSVL 448 (611)
T ss_pred HHHHHHHhcC-CCcchhhhhhhheeehHh-------------------------------hhHHHHHHHHHHHHHhhhcc
Confidence 5554443322 234444444444444444 444555444444310 0
Q ss_pred -CC-CCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCCHHhHH
Q 004487 473 -YQ-PDSVSLLSVLSACSHCGLIEEGLQYFNSMTQKYKLRPKKEHYASMVDILCRSGCFDEAEKLMAQM-PFEPDEIMWS 549 (749)
Q Consensus 473 -~~-p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~ 549 (749)
-. --..+++.|..+|.+.+.+++|+..++..... .+.+..+++++.-.|...|+++.|.+.|.+. ..+||..+-.
T Consensus 449 ~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l--~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n~~~~ 526 (611)
T KOG1173|consen 449 NEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLL--SPKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPDNIFIS 526 (611)
T ss_pred ccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHc--CCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccHHHH
Confidence 01 12345666666677777777777777666532 3345666666666677777777777777665 6667666666
Q ss_pred HHHHHHHh
Q 004487 550 SVINSCRI 557 (749)
Q Consensus 550 ~ll~~~~~ 557 (749)
.+++.+..
T Consensus 527 ~lL~~aie 534 (611)
T KOG1173|consen 527 ELLKLAIE 534 (611)
T ss_pred HHHHHHHH
Confidence 66655443
No 71
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=99.00 E-value=7.2e-05 Score=78.34 Aligned_cols=194 Identities=12% Similarity=0.162 Sum_probs=136.1
Q ss_pred HHHcCCChHHHHHHHhcCCCCCcch--HHHHHHHHHcCCChhHHHHHHHHhHhcCCCCCCcchHHHHHHhcCCCCChHHH
Q 004487 15 GYVKSGNLATARELFNSMVDRTAVS--WTILIGGYSQKNQFREAFKLFVDMRTDGGSDPDYVTFATLLSGCSEPDTANEL 92 (749)
Q Consensus 15 ~~~~~g~~~~A~~~f~~~~~~~~~~--~~~li~~~~~~g~~~~a~~l~~~m~~~~g~~p~~~~~~~ll~~~~~~~~~~~a 92 (749)
+-.....+.+|+.+++.++.+++.+ |..+..-|+..|+++.|.++|-+.- .|+-.|..|.+.|.|..|
T Consensus 741 aai~akew~kai~ildniqdqk~~s~yy~~iadhyan~~dfe~ae~lf~e~~----------~~~dai~my~k~~kw~da 810 (1636)
T KOG3616|consen 741 AAIGAKEWKKAISILDNIQDQKTASGYYGEIADHYANKGDFEIAEELFTEAD----------LFKDAIDMYGKAGKWEDA 810 (1636)
T ss_pred HHhhhhhhhhhHhHHHHhhhhccccccchHHHHHhccchhHHHHHHHHHhcc----------hhHHHHHHHhccccHHHH
Confidence 3345567788888888887766554 6677778888888888888886531 245667778888888888
Q ss_pred HHHHHHHHHhCCCCchhHHHHHHHHhHcCCChhHHHHHHccCCCCCcchHHHHHHHHHhCCChhHHHHHHHHHHHCCCCC
Q 004487 93 IQVHADIIKFGYNSILIICNSLVDSYCKIRCLDLARRVFKEMPQKDSVSFNALITGFAKEGLNEEAIKLFVEMQHLGFKP 172 (749)
Q Consensus 93 ~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p 172 (749)
..+-+.. .|.+.....|-+-..-+-+.|++.+|++++-.+..|+. -|..|-+.|..+..+++..+-... .
T Consensus 811 ~kla~e~--~~~e~t~~~yiakaedldehgkf~eaeqlyiti~~p~~-----aiqmydk~~~~ddmirlv~k~h~d---~ 880 (1636)
T KOG3616|consen 811 FKLAEEC--HGPEATISLYIAKAEDLDEHGKFAEAEQLYITIGEPDK-----AIQMYDKHGLDDDMIRLVEKHHGD---H 880 (1636)
T ss_pred HHHHHHh--cCchhHHHHHHHhHHhHHhhcchhhhhheeEEccCchH-----HHHHHHhhCcchHHHHHHHHhChh---h
Confidence 7765543 34455555666666666778888888888888887775 377788888888888877664321 1
Q ss_pred ChhhHHHHHHHHhCCCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHcCCChHHHHHHHccCCC
Q 004487 173 SDFTFAAALSAGVGLADIALGRQVHAFVVKTNFVENVFVANALLDLYSKHDCVVEARKLFGEMPE 237 (749)
Q Consensus 173 ~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~ 237 (749)
-..|-..+.+-+-..|++..|..-+-... -|.+-++||-..+.+++|.++-..-..
T Consensus 881 l~dt~~~f~~e~e~~g~lkaae~~flea~---------d~kaavnmyk~s~lw~dayriaktegg 936 (1636)
T KOG3616|consen 881 LHDTHKHFAKELEAEGDLKAAEEHFLEAG---------DFKAAVNMYKASELWEDAYRIAKTEGG 936 (1636)
T ss_pred hhHHHHHHHHHHHhccChhHHHHHHHhhh---------hHHHHHHHhhhhhhHHHHHHHHhcccc
Confidence 13455556666777888888876654332 356778899888999999888765443
No 72
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=98.99 E-value=7.3e-06 Score=86.62 Aligned_cols=398 Identities=12% Similarity=0.091 Sum_probs=255.5
Q ss_pred cCCCCChhHHHHHHHHHHcCCChHHHHHHHccCCC---CCcchHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCcchHH
Q 004487 203 TNFVENVFVANALLDLYSKHDCVVEARKLFGEMPE---VDGVSYNVMITCYAWNEQYKESLKLFRELQFTRFDRSQFPFS 279 (749)
Q Consensus 203 ~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~ 279 (749)
..+..|..+|..|.-+...+|+++.+-+.|++... .....|+.+-..|.-.|.-..|+.++++-......|+..+--
T Consensus 317 ~~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~ 396 (799)
T KOG4162|consen 317 KKFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVL 396 (799)
T ss_pred hhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHH
Confidence 34567889999999999999999999999988754 345579999999999999999999999876655445544433
Q ss_pred HHH-HHHH-ccCChHHHHHHHHHHHHh--cC--CcchhHHHHHHHHHHhc----C-------CHHHHHHHHHhcCCCCcc
Q 004487 280 TLL-SVVA-NKLDLQIGRQIHTQTIVT--TA--ISEVKVANSLVDMYAKC----G-------RFEEAKEIFANLSHISTV 342 (749)
Q Consensus 280 ~ll-~~~~-~~~~~~~a~~~~~~~~~~--g~--~~~~~~~~~li~~~~~~----g-------~~~~A~~~~~~~~~~~~~ 342 (749)
.+. ..|. +.+..+.+...-..+++. +. ......+-.+.-+|... . ...++...+++..+.+..
T Consensus 397 Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~ 476 (799)
T KOG4162|consen 397 LMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPT 476 (799)
T ss_pred HHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCC
Confidence 333 3343 567777777776666662 21 12233444444444432 1 133455566666443322
Q ss_pred cHHH---HHHHHHhCCChhHHHHHHHHHHHCCCCcCHHhHHHHHHHhcccCcHHHHHHHHHHHHHh-CCCCchhHHHHHH
Q 004487 343 PWTA---MISAYVQKGNLEEALNLFIEMCRANISADQATFASILRASAELASLSLGKQLHSFVIRS-GFMSNVFSGSALL 418 (749)
Q Consensus 343 ~~~~---li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~li 418 (749)
-++. +.--|+-.++.+.|++..++....+-.-+...|..+.-.++..+++..|+.+.+..... |......... +
T Consensus 477 dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~~l~~~~--~ 554 (799)
T KOG4162|consen 477 DPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNHVLMDGK--I 554 (799)
T ss_pred CchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhhchhh--h
Confidence 2222 23346677889999999999988766777888888887888888999998887765542 2211000000 0
Q ss_pred HHHHhcCCHHHHHHH--------------------------HhhCC----C-CC-cchHHHHHHHHHhcCCHHHHHHHHH
Q 004487 419 DMYAKSGSLKDAIQT--------------------------FKEMP----E-RN-IVSWNALISACAQNGDAQATLKSFE 466 (749)
Q Consensus 419 ~~y~~~g~~~~A~~~--------------------------~~~~~----~-~~-~~~~~~li~~~~~~g~~~~A~~~~~ 466 (749)
..-..-++.++|... +..+. + .+ +.++..+..-....+ ..+..-..
T Consensus 555 ~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~--~~~~se~~ 632 (799)
T KOG4162|consen 555 HIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQL--KSAGSELK 632 (799)
T ss_pred hhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhh--hhcccccc
Confidence 001112333333222 22221 0 01 122222221111111 00000000
Q ss_pred HHHHCCCCC--CH------HHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCC-ChHHHHHHHHHHHHcCCHHHHHHHHH
Q 004487 467 DMVQSGYQP--DS------VSLLSVLSACSHCGLIEEGLQYFNSMTQKYKLRP-KKEHYASMVDILCRSGCFDEAEKLMA 537 (749)
Q Consensus 467 ~m~~~g~~p--~~------~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~ 537 (749)
|...-+.| +. ..|......+...+..++|...+.+.. ++.| ....|.-....+...|.++||.+.|.
T Consensus 633 -Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~---~~~~l~~~~~~~~G~~~~~~~~~~EA~~af~ 708 (799)
T KOG4162|consen 633 -LPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEAS---KIDPLSASVYYLRGLLLEVKGQLEEAKEAFL 708 (799)
T ss_pred -cCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHH---hcchhhHHHHHHhhHHHHHHHhhHHHHHHHH
Confidence 11111222 21 234445556788888999988777665 3444 44566666788889999999999988
Q ss_pred hC-CCCCC-HHhHHHHHHHHHhcCCHHHHHH--HHHHHhcCCCCCCchhHHHHHHHHHHcCCchhHHHHHHHHHhC
Q 004487 538 QM-PFEPD-EIMWSSVINSCRIHKNLEFAKK--AADQLFKMEKLRDAAPYVAMSNIYAVAGQWESVSQVKKAMRER 609 (749)
Q Consensus 538 ~~-~~~p~-~~~~~~ll~~~~~~g~~~~a~~--~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 609 (749)
.. -+.|+ +.+..++...+.+.|+-..|.. ++..+++.+| .++..|..|+.++...|+.++|.+.+....+-
T Consensus 709 ~Al~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp-~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qL 783 (799)
T KOG4162|consen 709 VALALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDP-LNHEAWYYLGEVFKKLGDSKQAAECFQAALQL 783 (799)
T ss_pred HHHhcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCC-CCHHHHHHHHHHHHHccchHHHHHHHHHHHhh
Confidence 77 67786 6778888888999999888888 9999999999 99999999999999999999999999987654
No 73
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=98.98 E-value=1.3e-07 Score=92.09 Aligned_cols=194 Identities=18% Similarity=0.200 Sum_probs=117.1
Q ss_pred HHHHHHHHHhCCChhHHHHHHHHHHHCCCCcCHHhHHHHHHHhcccCcHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHh
Q 004487 344 WTAMISAYVQKGNLEEALNLFIEMCRANISADQATFASILRASAELASLSLGKQLHSFVIRSGFMSNVFSGSALLDMYAK 423 (749)
Q Consensus 344 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~ 423 (749)
+..+...|...|++++|.+.+++..+.. |+ +...+..+...|..
T Consensus 34 ~~~la~~~~~~~~~~~A~~~~~~~l~~~--p~----------------------------------~~~~~~~la~~~~~ 77 (234)
T TIGR02521 34 RVQLALGYLEQGDLEVAKENLDKALEHD--PD----------------------------------DYLAYLALALYYQQ 77 (234)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC--cc----------------------------------cHHHHHHHHHHHHH
Confidence 6667777778888888888887776532 22 22333444455555
Q ss_pred cCCHHHHHHHHhhCC---CCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCCHHHHHHH
Q 004487 424 SGSLKDAIQTFKEMP---ERNIVSWNALISACAQNGDAQATLKSFEDMVQSGYQP-DSVSLLSVLSACSHCGLIEEGLQY 499 (749)
Q Consensus 424 ~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~ 499 (749)
.|++++|.+.|++.. ..+...+..+...+...|++++|.+.|++.......| +...+..+..++...|++++|.+.
T Consensus 78 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 157 (234)
T TIGR02521 78 LGELEKAEDSFRRALTLNPNNGDVLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKY 157 (234)
T ss_pred cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHH
Confidence 555555555555443 2233455556666666677777777777766532222 223455555666777777777777
Q ss_pred HHHhHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHhHHHHHHHHHhcCCHHHHHHHHHHHhcCC
Q 004487 500 FNSMTQKYKLRPKKEHYASMVDILCRSGCFDEAEKLMAQM-PFEP-DEIMWSSVINSCRIHKNLEFAKKAADQLFKME 575 (749)
Q Consensus 500 ~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 575 (749)
++..... .+.+...+..+...+...|++++|.+.+++. ...| +...+..+...+...|+.+.|....+.+....
T Consensus 158 ~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 233 (234)
T TIGR02521 158 LTRALQI--DPQRPESLLELAELYYLRGQYKDARAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQKLF 233 (234)
T ss_pred HHHHHHh--CcCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhC
Confidence 7766643 1223456666777777777777777777665 2223 34555556666677777777777777665543
No 74
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=98.96 E-value=1.2e-07 Score=99.27 Aligned_cols=236 Identities=17% Similarity=0.225 Sum_probs=152.6
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhcCCC----------Cccc-HHHHHHHHHhCCChhHHHHHHHHHHHCCCCcCHHh
Q 004487 310 VKVANSLVDMYAKCGRFEEAKEIFANLSHI----------STVP-WTAMISAYVQKGNLEEALNLFIEMCRANISADQAT 378 (749)
Q Consensus 310 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----------~~~~-~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t 378 (749)
..+...|..+|...|+++.|..+++...+. .+.+ .+.+...|...+++.+|..+|+++..-
T Consensus 199 ~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i-------- 270 (508)
T KOG1840|consen 199 LRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTI-------- 270 (508)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH--------
Confidence 345555777888888888888877665421 1111 334555677778888888888777541
Q ss_pred HHHHHHHhcccCcHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCC----------CCCcc-hHHH
Q 004487 379 FASILRASAELASLSLGKQLHSFVIRSGFMSNVFSGSALLDMYAKSGSLKDAIQTFKEMP----------ERNIV-SWNA 447 (749)
Q Consensus 379 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~----------~~~~~-~~~~ 447 (749)
.........+.-..+++.|..+|.+.|++++|...++... .+.+. ..+.
T Consensus 271 --------------------~e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~ 330 (508)
T KOG1840|consen 271 --------------------REEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSE 330 (508)
T ss_pred --------------------HHHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHH
Confidence 0000000111112334445555666666655555554432 12222 3455
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHC---CCCCCH----HHHHHHHHHHhccCCHHHHHHHHHHhHHhc----C-CCC-ChH
Q 004487 448 LISACAQNGDAQATLKSFEDMVQS---GYQPDS----VSLLSVLSACSHCGLIEEGLQYFNSMTQKY----K-LRP-KKE 514 (749)
Q Consensus 448 li~~~~~~g~~~~A~~~~~~m~~~---g~~p~~----~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~----~-~~p-~~~ 514 (749)
++..+...+++++|..++....+. -+.++. .++..|...|.+.|++++|.++|++..... + ..+ ...
T Consensus 331 ~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~ 410 (508)
T KOG1840|consen 331 LAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGK 410 (508)
T ss_pred HHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhH
Confidence 666677788888888888765442 123333 378888889999999999999998876542 1 122 234
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHhC--------CCCCC-HHhHHHHHHHHHhcCCHHHHHHHHHHHhc
Q 004487 515 HYASMVDILCRSGCFDEAEKLMAQM--------PFEPD-EIMWSSVINSCRIHKNLEFAKKAADQLFK 573 (749)
Q Consensus 515 ~~~~li~~~~~~g~~~~A~~~~~~~--------~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 573 (749)
.++.|...|.+.+.+.+|.++|.+. +..|+ ..+|..|...|...|++|.|+++.+.+..
T Consensus 411 ~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~ 478 (508)
T KOG1840|consen 411 PLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLN 478 (508)
T ss_pred HHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 6677888899999999888888775 33454 57899999999999999999999988863
No 75
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.96 E-value=1.1e-05 Score=77.15 Aligned_cols=192 Identities=16% Similarity=0.178 Sum_probs=128.4
Q ss_pred HHHHHHHHhcCCHHHHHHHHhhCCCCCcchHHHHHHHHHhcCC-------HHHHHHHHHHHHHCCCCCCHH-HHHHHHHH
Q 004487 415 SALLDMYAKSGSLKDAIQTFKEMPERNIVSWNALISACAQNGD-------AQATLKSFEDMVQSGYQPDSV-SLLSVLSA 486 (749)
Q Consensus 415 ~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~-------~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a 486 (749)
-.|+-.|.+.+++.+|..+.+++....+.-|-.-.-.++..|+ ..-|.+.|+-.-+++..-|.+ --.++.++
T Consensus 289 lNL~iYyL~q~dVqeA~~L~Kdl~PttP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~ 368 (557)
T KOG3785|consen 289 LNLIIYYLNQNDVQEAISLCKDLDPTTPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASY 368 (557)
T ss_pred hhheeeecccccHHHHHHHHhhcCCCChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHH
Confidence 3466678999999999999998875444444322222344443 344555555544555544433 34455566
Q ss_pred HhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHhC-CCC-CCHHhHHHHHHHH-HhcCCHHH
Q 004487 487 CSHCGLIEEGLQYFNSMTQKYKLRPKKEHYASMVDILCRSGCFDEAEKLMAQM-PFE-PDEIMWSSVINSC-RIHKNLEF 563 (749)
Q Consensus 487 ~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~-p~~~~~~~ll~~~-~~~g~~~~ 563 (749)
+.-..++++.+-+++.+.. |-...|...+ .+..+++..|.+.+|+++|-+. +.+ .|..+|.+++.-| .+.+..+.
T Consensus 369 fFL~~qFddVl~YlnSi~s-YF~NdD~Fn~-N~AQAk~atgny~eaEelf~~is~~~ikn~~~Y~s~LArCyi~nkkP~l 446 (557)
T KOG3785|consen 369 FFLSFQFDDVLTYLNSIES-YFTNDDDFNL-NLAQAKLATGNYVEAEELFIRISGPEIKNKILYKSMLARCYIRNKKPQL 446 (557)
T ss_pred HHHHHHHHHHHHHHHHHHH-HhcCcchhhh-HHHHHHHHhcChHHHHHHHhhhcChhhhhhHHHHHHHHHHHHhcCCchH
Confidence 6667788999999988873 4444555554 4788999999999999999887 222 4778888877765 56677777
Q ss_pred HHHHHHHHhcCCCCC-CchhHHHHHHHHHHcCCchhHHHHHHHHHhCCC
Q 004487 564 AKKAADQLFKMEKLR-DAAPYVAMSNIYAVAGQWESVSQVKKAMRERGV 611 (749)
Q Consensus 564 a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~ 611 (749)
|..++ ++.+... .-...-.+++-|..++.+--|.+.+..+.....
T Consensus 447 AW~~~---lk~~t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~lDP 492 (557)
T KOG3785|consen 447 AWDMM---LKTNTPSERFSLLQLIANDCYKANEFYYAAKAFDELEILDP 492 (557)
T ss_pred HHHHH---HhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHccCC
Confidence 66554 4444312 234455678889999999999999988866543
No 76
>PRK12370 invasion protein regulator; Provisional
Probab=98.93 E-value=1.1e-07 Score=104.63 Aligned_cols=211 Identities=17% Similarity=0.095 Sum_probs=160.5
Q ss_pred CcHHHHHHHHHHHHHhCCCCchhHHHHHHHHHH---------hcCCHHHHHHHHhhCCC---CCcchHHHHHHHHHhcCC
Q 004487 390 ASLSLGKQLHSFVIRSGFMSNVFSGSALLDMYA---------KSGSLKDAIQTFKEMPE---RNIVSWNALISACAQNGD 457 (749)
Q Consensus 390 ~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~---------~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~ 457 (749)
++++.|...++..++.... +...+..+..+|. ..+++++|...+++..+ .+...|..+...+...|+
T Consensus 275 ~~~~~A~~~~~~Al~ldP~-~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g~ 353 (553)
T PRK12370 275 YSLQQALKLLTQCVNMSPN-SIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNNPQALGLLGLINTIHSE 353 (553)
T ss_pred HHHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccC
Confidence 3467888888888775422 3445555555443 23458899999998773 356678888888899999
Q ss_pred HHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChH-HHHHHHHHHHHcCCHHHHHHH
Q 004487 458 AQATLKSFEDMVQSGYQPDS-VSLLSVLSACSHCGLIEEGLQYFNSMTQKYKLRPKKE-HYASMVDILCRSGCFDEAEKL 535 (749)
Q Consensus 458 ~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~-~~~~li~~~~~~g~~~~A~~~ 535 (749)
+++|...|++..+ ..|+. ..+..+..++...|++++|...++...+ +.|+.. .+..+...+...|++++|.+.
T Consensus 354 ~~~A~~~~~~Al~--l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~---l~P~~~~~~~~~~~~~~~~g~~eeA~~~ 428 (553)
T PRK12370 354 YIVGSLLFKQANL--LSPISADIKYYYGWNLFMAGQLEEALQTINECLK---LDPTRAAAGITKLWITYYHTGIDDAIRL 428 (553)
T ss_pred HHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh---cCCCChhhHHHHHHHHHhccCHHHHHHH
Confidence 9999999999999 55764 4777788889999999999999999884 456532 333445557778999999999
Q ss_pred HHhC--CCCCC-HHhHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHcCCchhHHHHHHHHHhC
Q 004487 536 MAQM--PFEPD-EIMWSSVINSCRIHKNLEFAKKAADQLFKMEKLRDAAPYVAMSNIYAVAGQWESVSQVKKAMRER 609 (749)
Q Consensus 536 ~~~~--~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 609 (749)
+++. ...|+ +..+..+...+...|+.++|...++++....| .+......+...|...| ++|...++.+.+.
T Consensus 429 ~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~ 502 (553)
T PRK12370 429 GDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEI-TGLIAVNLLYAEYCQNS--ERALPTIREFLES 502 (553)
T ss_pred HHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccc-hhHHHHHHHHHHHhccH--HHHHHHHHHHHHH
Confidence 9887 22354 45566777778899999999999999988888 77777888888888888 5888877776554
No 77
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.91 E-value=0.00014 Score=79.01 Aligned_cols=113 Identities=14% Similarity=0.215 Sum_probs=77.7
Q ss_pred ccHHHHHHHHHhCCChhHHHHHHHHHHHCCCCcCHHhHHHHHHHhcccCcHHHHHHHHHHHHHhCCCCchhHHHHHHHHH
Q 004487 342 VPWTAMISAYVQKGNLEEALNLFIEMCRANISADQATFASILRASAELASLSLGKQLHSFVIRSGFMSNVFSGSALLDMY 421 (749)
Q Consensus 342 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y 421 (749)
..|+.+..+-.+.|...+|++-|-+. -|+..|..++..+.+.|.++.-..++..+.+..-+|.+. +.||-+|
T Consensus 1105 ~vWsqlakAQL~~~~v~dAieSyika------dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id--~eLi~Ay 1176 (1666)
T KOG0985|consen 1105 AVWSQLAKAQLQGGLVKDAIESYIKA------DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYID--SELIFAY 1176 (1666)
T ss_pred HHHHHHHHHHHhcCchHHHHHHHHhc------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccch--HHHHHHH
Confidence 34888888888888888888776432 367788888999999999988888888887777666554 6788888
Q ss_pred HhcCCHHHHHHHHhhCCCCCcchHHHHHHHHHhcCCHHHHHHHH
Q 004487 422 AKSGSLKDAIQTFKEMPERNIVSWNALISACAQNGDAQATLKSF 465 (749)
Q Consensus 422 ~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 465 (749)
++.+++.+-++++. .||+.-...+.+-|...|.++.|.-+|
T Consensus 1177 Akt~rl~elE~fi~---gpN~A~i~~vGdrcf~~~~y~aAkl~y 1217 (1666)
T KOG0985|consen 1177 AKTNRLTELEEFIA---GPNVANIQQVGDRCFEEKMYEAAKLLY 1217 (1666)
T ss_pred HHhchHHHHHHHhc---CCCchhHHHHhHHHhhhhhhHHHHHHH
Confidence 88888887766543 234433334444444444444444333
No 78
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=98.90 E-value=1.3e-07 Score=85.17 Aligned_cols=161 Identities=14% Similarity=0.163 Sum_probs=134.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCC-ChHHHHHHHHH
Q 004487 445 WNALISACAQNGDAQATLKSFEDMVQSGYQPDSV-SLLSVLSACSHCGLIEEGLQYFNSMTQKYKLRP-KKEHYASMVDI 522 (749)
Q Consensus 445 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~ 522 (749)
...|.-+|.+.|+...|..-+++.++ ..|+.. ++..+...|.+.|..+.|.+.|+... .+.| +.++.|...--
T Consensus 38 rlqLal~YL~~gd~~~A~~nlekAL~--~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAl---sl~p~~GdVLNNYG~F 112 (250)
T COG3063 38 RLQLALGYLQQGDYAQAKKNLEKALE--HDPSYYLAHLVRAHYYQKLGENDLADESYRKAL---SLAPNNGDVLNNYGAF 112 (250)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHH--hCcccHHHHHHHHHHHHHcCChhhHHHHHHHHH---hcCCCccchhhhhhHH
Confidence 44567788899999999999999988 567655 88888888999999999999998877 3456 45677888888
Q ss_pred HHHcCCHHHHHHHHHhCCCCCC----HHhHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHcCCchh
Q 004487 523 LCRSGCFDEAEKLMAQMPFEPD----EIMWSSVINSCRIHKNLEFAKKAADQLFKMEKLRDAAPYVAMSNIYAVAGQWES 598 (749)
Q Consensus 523 ~~~~g~~~~A~~~~~~~~~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 598 (749)
+|..|++++|...|++.-..|+ ..+|..+.....+.|+.+.|...+++.++.+| ..+.+...+.......|++-.
T Consensus 113 LC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp-~~~~~~l~~a~~~~~~~~y~~ 191 (250)
T COG3063 113 LCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDP-QFPPALLELARLHYKAGDYAP 191 (250)
T ss_pred HHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCc-CCChHHHHHHHHHHhcccchH
Confidence 8999999999999988833332 56788887777889999999999999999999 999999999999999999999
Q ss_pred HHHHHHHHHhCCC
Q 004487 599 VSQVKKAMRERGV 611 (749)
Q Consensus 599 a~~~~~~m~~~g~ 611 (749)
|..+++....++.
T Consensus 192 Ar~~~~~~~~~~~ 204 (250)
T COG3063 192 ARLYLERYQQRGG 204 (250)
T ss_pred HHHHHHHHHhccc
Confidence 9999998877654
No 79
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=98.89 E-value=3.9e-05 Score=81.32 Aligned_cols=492 Identities=15% Similarity=0.085 Sum_probs=258.6
Q ss_pred cCCChhHHHHHHHHhHhcCCCCCCcchHHHHHHhcC---CCCChHHH-------------------HH----HHHHHHHh
Q 004487 49 QKNQFREAFKLFVDMRTDGGSDPDYVTFATLLSGCS---EPDTANEL-------------------IQ----VHADIIKF 102 (749)
Q Consensus 49 ~~g~~~~a~~l~~~m~~~~g~~p~~~~~~~ll~~~~---~~~~~~~a-------------------~~----~~~~~~~~ 102 (749)
..++.++++.-+...... +...+..++..+..... ..++.++. .. .+.++...
T Consensus 239 ~~~~~~~~i~s~~~~l~~-~w~~~~l~ka~l~~~~~~f~~~~~~Ee~~Lllli~es~i~Re~~~d~ilslm~~~~k~r~~ 317 (799)
T KOG4162|consen 239 KLSGPKEAIKSYRRALLR-SWSLDPLTKARLYKGFALFLPKSGQEEVILLLLIEESLIPRENIEDAILSLMLLLRKLRLK 317 (799)
T ss_pred CCCCchHHHHhhhHHhhc-ccccchhHHHHHhhcccccCCCCcHHHHHHHHHHHhhccccccHHHHHHHHHHHHHHHHHh
Confidence 445566666666666655 56666666666554432 23333333 11 11112222
Q ss_pred CCCCchhHHHHHHHHhHcCCChhHHHHHHccCCC---CCcchHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCC-hhhHH
Q 004487 103 GYNSILIICNSLVDSYCKIRCLDLARRVFKEMPQ---KDSVSFNALITGFAKEGLNEEAIKLFVEMQHLGFKPS-DFTFA 178 (749)
Q Consensus 103 g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~ 178 (749)
.++-|..+|-.|.-+...+|+++.+-+.|++... .....|+.+-..|.-.|.-..|+.+++.-....-.|+ ...+.
T Consensus 318 ~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~L 397 (799)
T KOG4162|consen 318 KFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLL 397 (799)
T ss_pred hhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHH
Confidence 3445666777777777777777777777766543 2334577777777777777777777765443221232 22232
Q ss_pred HHHHHHh-CCCChHHHHHHHHHHHHcC--C--CCChhHHHHHHHHHHcCCChHHHHHHHccCCCCCcchHHHHHHHHHhc
Q 004487 179 AALSAGV-GLADIALGRQVHAFVVKTN--F--VENVFVANALLDLYSKHDCVVEARKLFGEMPEVDGVSYNVMITCYAWN 253 (749)
Q Consensus 179 ~ll~a~~-~~~~~~~a~~~~~~~~~~g--~--~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~ 253 (749)
..-+.|. +.+..+.+...-..++... . ......+-.+.-+|...- ....++. -+.
T Consensus 398 masklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A--------------~~a~~~s------eR~ 457 (799)
T KOG4162|consen 398 MASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQA--------------RQANLKS------ERD 457 (799)
T ss_pred HHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHh--------------hcCCChH------HHH
Confidence 2223333 2233333333333333210 0 001111111211221100 0000000 011
Q ss_pred CChhHHHHHHHHHHHCC-CCCCcchHHHHHHHHHccCChHHHHHHHHHHHHhcCCcchhHHHHHHHHHHhcCCHHHHHHH
Q 004487 254 EQYKESLKLFRELQFTR-FDRSQFPFSTLLSVVANKLDLQIGRQIHTQTIVTTAISEVKVANSLVDMYAKCGRFEEAKEI 332 (749)
Q Consensus 254 g~~~~A~~~~~~m~~~~-~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~ 332 (749)
....++++.+++..+.+ -.|+..-|.++- ++..++++.|.+...+.++.+-..+...+..|.-.+.-.+++.+|+.+
T Consensus 458 ~~h~kslqale~av~~d~~dp~~if~lalq--~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~v 535 (799)
T KOG4162|consen 458 ALHKKSLQALEEAVQFDPTDPLVIFYLALQ--YAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDV 535 (799)
T ss_pred HHHHHHHHHHHHHHhcCCCCchHHHHHHHH--HHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHH
Confidence 12345666666664432 334333333332 334556677777777777766666666676666667777777777777
Q ss_pred HHhcCCCCcccHH---HHHHHHHhCCChhHHHHHHHHHHHCC--CCcCHHhHHHHHHHhcccCcHHHHHHHHHHHH--Hh
Q 004487 333 FANLSHISTVPWT---AMISAYVQKGNLEEALNLFIEMCRAN--ISADQATFASILRASAELASLSLGKQLHSFVI--RS 405 (749)
Q Consensus 333 ~~~~~~~~~~~~~---~li~~~~~~g~~~~A~~l~~~m~~~g--~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~--~~ 405 (749)
.+...+.-...++ .-+..-..-++.++|+.+...+..-- ..|-..+ ++-....+....+. ..
T Consensus 536 vd~al~E~~~N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~-----------~~~g~~~~lk~~l~la~~ 604 (799)
T KOG4162|consen 536 VDAALEEFGDNHVLMDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQT-----------LDEGKLLRLKAGLHLALS 604 (799)
T ss_pred HHHHHHHhhhhhhhchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhh-----------hhhhhhhhhhcccccCcc
Confidence 6654321111111 11222223566666666665554310 0000000 00000000000000 00
Q ss_pred CCCCchhHHHHHHHHHH---hcCCHHHHHHHHhhCCCCC------cchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 004487 406 GFMSNVFSGSALLDMYA---KSGSLKDAIQTFKEMPERN------IVSWNALISACAQNGDAQATLKSFEDMVQSGYQPD 476 (749)
Q Consensus 406 ~~~~~~~~~~~li~~y~---~~g~~~~A~~~~~~~~~~~------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 476 (749)
.....+.++..+..... +.-..+.....+...+.|+ ...|......+...++.++|...+.+... +.|-
T Consensus 605 q~~~a~s~sr~ls~l~a~~~~~~~se~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~--~~~l 682 (799)
T KOG4162|consen 605 QPTDAISTSRYLSSLVASQLKSAGSELKLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASK--IDPL 682 (799)
T ss_pred cccccchhhHHHHHHHHhhhhhcccccccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHh--cchh
Confidence 11111222222222221 1111111122222222333 23466667778888999999888877766 4444
Q ss_pred H-HHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHHHcCCHHHHHH--HHHhC-CCCC-CHHhHHH
Q 004487 477 S-VSLLSVLSACSHCGLIEEGLQYFNSMTQKYKLRPK-KEHYASMVDILCRSGCFDEAEK--LMAQM-PFEP-DEIMWSS 550 (749)
Q Consensus 477 ~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~--~~~~~-~~~p-~~~~~~~ 550 (749)
. ..|......+...|.+++|.+.|.... .+.|+ +....++..++.+.|+..-|.+ ++..+ .+.| +...|-.
T Consensus 683 ~~~~~~~~G~~~~~~~~~~EA~~af~~Al---~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~ 759 (799)
T KOG4162|consen 683 SASVYYLRGLLLEVKGQLEEAKEAFLVAL---ALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYY 759 (799)
T ss_pred hHHHHHHhhHHHHHHHhhHHHHHHHHHHH---hcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHH
Confidence 3 355555567788899999999998766 56775 5677889999999998777777 77766 6667 5889999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhcCCCCCCc
Q 004487 551 VINSCRIHKNLEFAKKAADQLFKMEKLRDA 580 (749)
Q Consensus 551 ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 580 (749)
|.....+.|+.+.|...|+.+.++++ .++
T Consensus 760 LG~v~k~~Gd~~~Aaecf~aa~qLe~-S~P 788 (799)
T KOG4162|consen 760 LGEVFKKLGDSKQAAECFQAALQLEE-SNP 788 (799)
T ss_pred HHHHHHHccchHHHHHHHHHHHhhcc-CCC
Confidence 99999999999999999999999988 444
No 80
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=98.85 E-value=4e-05 Score=79.64 Aligned_cols=424 Identities=13% Similarity=0.076 Sum_probs=224.3
Q ss_pred CCChHHHHHHHHHHHHhCCCCchhHHHHHHHHhHcCCChhHHHHHHccCCC---CCcchHHHHHHHHHhCCChhHHHHHH
Q 004487 86 PDTANELIQVHADIIKFGYNSILIICNSLVDSYCKIRCLDLARRVFKEMPQ---KDSVSFNALITGFAKEGLNEEAIKLF 162 (749)
Q Consensus 86 ~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~ 162 (749)
.+++..+..+.+.+++. .+....+....--.+...|+-++|......-.+ ++.+.|..+.-.+-...++++|+..|
T Consensus 20 ~kQYkkgLK~~~~iL~k-~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK~Y~eaiKcy 98 (700)
T KOG1156|consen 20 TKQYKKGLKLIKQILKK-FPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDKKYDEAIKCY 98 (700)
T ss_pred HHHHHhHHHHHHHHHHh-CCccchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHHhhhhhHHHHHHHH
Confidence 34555566666666652 221222222111123345788888877766554 45678999888888889999999999
Q ss_pred HHHHHCCCCCChhhHHHHHHHHhCCCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHcCCChHHHHHHHccCC---CCC
Q 004487 163 VEMQHLGFKPSDFTFAAALSAGVGLADIALGRQVHAFVVKTNFVENVFVANALLDLYSKHDCVVEARKLFGEMP---EVD 239 (749)
Q Consensus 163 ~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~---~~~ 239 (749)
+..... .||.... +..|.-.-+..|+++-....-.... ...
T Consensus 99 ~nAl~~--~~dN~qi----------------------------------lrDlslLQ~QmRd~~~~~~tr~~LLql~~~~ 142 (700)
T KOG1156|consen 99 RNALKI--EKDNLQI----------------------------------LRDLSLLQIQMRDYEGYLETRNQLLQLRPSQ 142 (700)
T ss_pred HHHHhc--CCCcHHH----------------------------------HHHHHHHHHHHHhhhhHHHHHHHHHHhhhhh
Confidence 988764 4543221 1111111111222222211111111 124
Q ss_pred cchHHHHHHHHHhcCChhHHHHHHHHHHHCC-CCCCcchHHHHHHHHHccCChHHHHHHHHHHHHhcCCcchhHHHHHHH
Q 004487 240 GVSYNVMITCYAWNEQYKESLKLFRELQFTR-FDRSQFPFSTLLSVVANKLDLQIGRQIHTQTIVTTAISEVKVANSLVD 318 (749)
Q Consensus 240 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~ 318 (749)
...|..+..++.-.|++..|..++++..+.. -.|+...+....... --..
T Consensus 143 ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~L-----------------------------y~n~ 193 (700)
T KOG1156|consen 143 RASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLL-----------------------------YQNQ 193 (700)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHH-----------------------------HHHH
Confidence 5578888888889999999999998886654 244444443221111 0112
Q ss_pred HHHhcCCHHHHHHHHHhcCCC--Cccc-HHHHHHHHHhCCChhHHHHHHHHHHHCCCCcCHHhHHHHHHHhcc--cCcHH
Q 004487 319 MYAKCGRFEEAKEIFANLSHI--STVP-WTAMISAYVQKGNLEEALNLFIEMCRANISADQATFASILRASAE--LASLS 393 (749)
Q Consensus 319 ~~~~~g~~~~A~~~~~~~~~~--~~~~-~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~--~~~~~ 393 (749)
...+.|..+.|.+.+...+.. |-.. --+....+.+.++.++|..++..+... .||..-|...+..+.- .+..+
T Consensus 194 i~~E~g~~q~ale~L~~~e~~i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~r--nPdn~~Yy~~l~~~lgk~~d~~~ 271 (700)
T KOG1156|consen 194 ILIEAGSLQKALEHLLDNEKQIVDKLAFEETKADLLMKLGQLEEAVKVYRRLLER--NPDNLDYYEGLEKALGKIKDMLE 271 (700)
T ss_pred HHHHcccHHHHHHHHHhhhhHHHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhh--CchhHHHHHHHHHHHHHHhhhHH
Confidence 245667777777776655431 1111 234456677889999999999998875 5777776655544331 11111
Q ss_pred HHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCcchHHHHHHHHHhcC-CHHHHHHHHHHHHHCC
Q 004487 394 LGKQLHSFVIRSGFMSNVFSGSALLDMYAKSGSLKDAIQTFKEMPERNIVSWNALISACAQNG-DAQATLKSFEDMVQSG 472 (749)
Q Consensus 394 ~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~g 472 (749)
....++....+.-.... .|--...+ ..... -.+..-+.+..+.+.|
T Consensus 272 ~lk~ly~~ls~~y~r~e----------------------------~p~Rlpls-----vl~~eel~~~vdkyL~~~l~Kg 318 (700)
T KOG1156|consen 272 ALKALYAILSEKYPRHE----------------------------CPRRLPLS-----VLNGEELKEIVDKYLRPLLSKG 318 (700)
T ss_pred HHHHHHHHHhhcCcccc----------------------------cchhccHH-----HhCcchhHHHHHHHHHHHhhcC
Confidence 11122222211100000 00000000 01111 1223334455556666
Q ss_pred CCCCHHHHHHHHHHHhccCCHHH-HHHHHHHhHHh--------cC-CCCChHHH--HHHHHHHHHcCCHHHHHHHHHhC-
Q 004487 473 YQPDSVSLLSVLSACSHCGLIEE-GLQYFNSMTQK--------YK-LRPKKEHY--ASMVDILCRSGCFDEAEKLMAQM- 539 (749)
Q Consensus 473 ~~p~~~t~~~ll~a~~~~g~~~~-a~~~~~~m~~~--------~~-~~p~~~~~--~~li~~~~~~g~~~~A~~~~~~~- 539 (749)
+++-...+.++..-=-+..-+++ +..+...+... .. -+|+...| -.++..+-+.|+++.|..+++..
T Consensus 319 ~p~vf~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AI 398 (700)
T KOG1156|consen 319 VPSVFKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAI 398 (700)
T ss_pred CCchhhhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHh
Confidence 55433333332221000000111 11111111100 00 13444333 35667778888888888888777
Q ss_pred CCCCC-HHhHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHcCCchhHHHHHHHHHhCCC
Q 004487 540 PFEPD-EIMWSSVINSCRIHKNLEFAKKAADQLFKMEKLRDAAPYVAMSNIYAVAGQWESVSQVKKAMRERGV 611 (749)
Q Consensus 540 ~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~ 611 (749)
...|+ +..|..-...+...|++++|-..++++.+++. +|...-.--++-..++.+.++|.++.......|.
T Consensus 399 dHTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD~-aDR~INsKcAKYmLrAn~i~eA~~~~skFTr~~~ 470 (700)
T KOG1156|consen 399 DHTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELDT-ADRAINSKCAKYMLRANEIEEAEEVLSKFTREGF 470 (700)
T ss_pred ccCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhccc-hhHHHHHHHHHHHHHccccHHHHHHHHHhhhccc
Confidence 55565 33444444567777888888888888888887 6666655666666778888888888877766654
No 81
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.85 E-value=1.8e-07 Score=88.14 Aligned_cols=230 Identities=12% Similarity=0.099 Sum_probs=138.5
Q ss_pred HHHHHHHHhCCChhHHHHHHHHHHHCCCCcCHHhHHHHHHHhcccCcHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhc
Q 004487 345 TAMISAYVQKGNLEEALNLFIEMCRANISADQATFASILRASAELASLSLGKQLHSFVIRSGFMSNVFSGSALLDMYAKS 424 (749)
Q Consensus 345 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~ 424 (749)
+.|-.+|.+.|.+.+|.+.|+.-.+. .|-..||..+-++|.+..+...|..++..-.+. ++.++....-+...+...
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~-fP~~VT~l~g~ARi~eam 303 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS-FPFDVTYLLGQARIHEAM 303 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc-CCchhhhhhhhHHHHHHH
Confidence 45667777777777777777666554 344445555555555555555555554443332 122333333334444444
Q ss_pred CCHHHHHHHHhhCCC---CCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHH
Q 004487 425 GSLKDAIQTFKEMPE---RNIVSWNALISACAQNGDAQATLKSFEDMVQSGYQPDSVSLLSVLSACSHCGLIEEGLQYFN 501 (749)
Q Consensus 425 g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~ 501 (749)
++.++|.++++...+ .++.+.-++..+|.-.++++-|+..|+++.+.|+. +...|..+.-+|...+++|-++.-|+
T Consensus 304 ~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~L~sf~ 382 (478)
T KOG1129|consen 304 EQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLVLPSFQ 382 (478)
T ss_pred HhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhhHHHHH
Confidence 555555555554442 23333344444555555566666666666555543 33344444445555555555554444
Q ss_pred HhHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCch
Q 004487 502 SMTQKYKLRPKKEHYASMVDILCRSGCFDEAEKLMAQMPFEPDEIMWSSVINSCRIHKNLEFAKKAADQLFKMEKLRDAA 581 (749)
Q Consensus 502 ~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 581 (749)
+.... .-+.++ -..+|-.|.......||+..|.+.|+-++..++ .+..
T Consensus 383 RAlst-------------------at~~~~------------aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~-~h~e 430 (478)
T KOG1129|consen 383 RALST-------------------ATQPGQ------------AADVWYNLGFVAVTIGDFNLAKRCFRLALTSDA-QHGE 430 (478)
T ss_pred HHHhh-------------------ccCcch------------hhhhhhccceeEEeccchHHHHHHHHHHhccCc-chHH
Confidence 33321 111111 245666666666778999999999999999999 9999
Q ss_pred hHHHHHHHHHHcCCchhHHHHHHHHHhCC
Q 004487 582 PYVAMSNIYAVAGQWESVSQVKKAMRERG 610 (749)
Q Consensus 582 ~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 610 (749)
+++.|+-+-.+.|+.++|..+++..++..
T Consensus 431 alnNLavL~~r~G~i~~Arsll~~A~s~~ 459 (478)
T KOG1129|consen 431 ALNNLAVLAARSGDILGARSLLNAAKSVM 459 (478)
T ss_pred HHHhHHHHHhhcCchHHHHHHHHHhhhhC
Confidence 99999999999999999999999887653
No 82
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.84 E-value=0.00023 Score=73.39 Aligned_cols=118 Identities=16% Similarity=0.231 Sum_probs=69.3
Q ss_pred HHHHHcCCChhHHHHHHHHhHhcCCCCCCcchHHHHHHhcCCCCChHHHHHHHHHHHHhCCCCchhHHHH--HHHHhH--
Q 004487 44 IGGYSQKNQFREAFKLFVDMRTDGGSDPDYVTFATLLSGCSEPDTANELIQVHADIIKFGYNSILIICNS--LVDSYC-- 119 (749)
Q Consensus 44 i~~~~~~g~~~~a~~l~~~m~~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~--li~~~~-- 119 (749)
+.-+..+|++++|.....++... .+-|...+..-+-++...+.+++|..+. .+.+. ..+.+. +=.+||
T Consensus 19 ln~~~~~~e~e~a~k~~~Kil~~--~pdd~~a~~cKvValIq~~ky~~ALk~i---kk~~~---~~~~~~~~fEKAYc~Y 90 (652)
T KOG2376|consen 19 LNRHGKNGEYEEAVKTANKILSI--VPDDEDAIRCKVVALIQLDKYEDALKLI---KKNGA---LLVINSFFFEKAYCEY 90 (652)
T ss_pred HHHhccchHHHHHHHHHHHHHhc--CCCcHhhHhhhHhhhhhhhHHHHHHHHH---Hhcch---hhhcchhhHHHHHHHH
Confidence 45556777788888888877753 3445555666666667777777666332 22221 011111 234443
Q ss_pred cCCChhHHHHHHccCCCCCcchHHHHHHHHHhCCChhHHHHHHHHHHHCC
Q 004487 120 KIRCLDLARRVFKEMPQKDSVSFNALITGFAKEGLNEEAIKLFVEMQHLG 169 (749)
Q Consensus 120 ~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g 169 (749)
+.+..++|...++...+.|..+...=.+.+.+.|++++|+++|+.+.+.+
T Consensus 91 rlnk~Dealk~~~~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~ 140 (652)
T KOG2376|consen 91 RLNKLDEALKTLKGLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNN 140 (652)
T ss_pred HcccHHHHHHHHhcccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 45677777777775444444455555566667777777777777776654
No 83
>PRK11189 lipoprotein NlpI; Provisional
Probab=98.78 E-value=2.6e-06 Score=85.67 Aligned_cols=196 Identities=10% Similarity=-0.067 Sum_probs=130.5
Q ss_pred HHHHHHHhcccCcHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCC--C-CcchHHHHHHHHHhc
Q 004487 379 FASILRASAELASLSLGKQLHSFVIRSGFMSNVFSGSALLDMYAKSGSLKDAIQTFKEMPE--R-NIVSWNALISACAQN 455 (749)
Q Consensus 379 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~ 455 (749)
|...-..+...|+.+.|...+...++.. +.+...++.+...|...|++++|.+.|+...+ | +...|..+...+...
T Consensus 67 ~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~ 145 (296)
T PRK11189 67 HYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAYLNRGIALYYG 145 (296)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHC
Confidence 3344444555566666666665555543 23567788888889999999999999988763 3 456788888888899
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHHcCCHHHH--H
Q 004487 456 GDAQATLKSFEDMVQSGYQPDSVSLLSVLSACSHCGLIEEGLQYFNSMTQKYKLRPKKEHYASMVDILCRSGCFDEA--E 533 (749)
Q Consensus 456 g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A--~ 533 (749)
|++++|++.|++..+ ..|+..........+...++.++|...|...... ..|+... ..++. ...|++.++ .
T Consensus 146 g~~~eA~~~~~~al~--~~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~--~~~~~~~-~~~~~--~~lg~~~~~~~~ 218 (296)
T PRK11189 146 GRYELAQDDLLAFYQ--DDPNDPYRALWLYLAESKLDPKQAKENLKQRYEK--LDKEQWG-WNIVE--FYLGKISEETLM 218 (296)
T ss_pred CCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHccCCHHHHHHHHHHHHhh--CCccccH-HHHHH--HHccCCCHHHHH
Confidence 999999999999988 5566543222233345677899999999765532 2333222 22333 335555443 3
Q ss_pred HHHHhC-CC----CC-CHHhHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCchhH
Q 004487 534 KLMAQM-PF----EP-DEIMWSSVINSCRIHKNLEFAKKAADQLFKMEKLRDAAPY 583 (749)
Q Consensus 534 ~~~~~~-~~----~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 583 (749)
+.+.+. .. .| ....|..+...+...|+.++|+..|+++++.+| ++..-+
T Consensus 219 ~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~-~~~~e~ 273 (296)
T PRK11189 219 ERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNV-YNFVEH 273 (296)
T ss_pred HHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-chHHHH
Confidence 333221 11 12 245788999999999999999999999999998 554443
No 84
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.76 E-value=0.00013 Score=71.62 Aligned_cols=384 Identities=8% Similarity=0.026 Sum_probs=192.3
Q ss_pred ChhHHHHHHHHHHcCCChHHHHHHHccCCCCC-cchHHHHHHHHHhcCC-hhHHHHHHHHHHHCCCCCCcchHHHHHHHH
Q 004487 208 NVFVANALLDLYSKHDCVVEARKLFGEMPEVD-GVSYNVMITCYAWNEQ-YKESLKLFRELQFTRFDRSQFPFSTLLSVV 285 (749)
Q Consensus 208 ~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~-~~~~~~li~~~~~~g~-~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~ 285 (749)
+...-.-.+..|-..++-++|.....+.+..- ..--|.|+.-+-+.|- -.++.--+.+....-+ ..+ ..|.+.
T Consensus 96 ~~e~~r~~aecy~~~~n~~~Ai~~l~~~p~t~r~p~inlMla~l~~~g~r~~~~vl~ykevvrecp----~aL-~~i~~l 170 (564)
T KOG1174|consen 96 DAEQRRRAAECYRQIGNTDMAIETLLQVPPTLRSPRINLMLARLQHHGSRHKEAVLAYKEVIRECP----MAL-QVIEAL 170 (564)
T ss_pred cHHHHHHHHHHHHHHccchHHHHHHhcCCccccchhHHHHHHHHHhccccccHHHHhhhHHHHhcc----hHH-HHHHHH
Confidence 44455667888888899999999888887643 3334444444433332 2222222222221110 000 000000
Q ss_pred HccCChHHHHHHHHHHHHhcCCcchhHHHHHHHHHHhc--CCHHHHHHHHHhcC-----CCCcccHHHHHHHHHhCCChh
Q 004487 286 ANKLDLQIGRQIHTQTIVTTAISEVKVANSLVDMYAKC--GRFEEAKEIFANLS-----HISTVPWTAMISAYVQKGNLE 358 (749)
Q Consensus 286 ~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~--g~~~~A~~~~~~~~-----~~~~~~~~~li~~~~~~g~~~ 358 (749)
...+ +..+..--..+-+....+.......-+.+|+.+ ++...|...+-.+. ..|+.....+...+...|+..
T Consensus 171 l~l~-v~g~e~~S~~m~~~~~~~~~dwls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~ 249 (564)
T KOG1174|consen 171 LELG-VNGNEINSLVMHAATVPDHFDWLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYF 249 (564)
T ss_pred HHHh-hcchhhhhhhhhheecCCCccHHHHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCch
Confidence 0000 000000000111112223233333334444443 33333333332222 233444666677777777777
Q ss_pred HHHHHHHHHHHCCCCcCHHhHHHH-HHHhcccCcHHHHHHHHHHHHHhC-CCCchhHHHHHHHHHHhcCCHHHHHHHHhh
Q 004487 359 EALNLFIEMCRANISADQATFASI-LRASAELASLSLGKQLHSFVIRSG-FMSNVFSGSALLDMYAKSGSLKDAIQTFKE 436 (749)
Q Consensus 359 ~A~~l~~~m~~~g~~p~~~t~~~l-l~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~li~~y~~~g~~~~A~~~~~~ 436 (749)
+|...|++.+. +.|+..+-.-+ .-.+.+.|+++....+...+.... ......+ . -........+++.|..+-++
T Consensus 250 ~a~~~Fe~~~~--~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~~~ta~~wf-V-~~~~l~~~K~~~rAL~~~eK 325 (564)
T KOG1174|consen 250 QAEDIFSSTLC--ANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKVKYTASHWF-V-HAQLLYDEKKFERALNFVEK 325 (564)
T ss_pred HHHHHHHHHhh--CChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhhhcchhhhh-h-hhhhhhhhhhHHHHHHHHHH
Confidence 77777777654 33433321111 112245566666666555554432 1111111 1 11122234556666666665
Q ss_pred CCCCC---cchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCC
Q 004487 437 MPERN---IVSWNALISACAQNGDAQATLKSFEDMVQSGYQP-DSVSLLSVLSACSHCGLIEEGLQYFNSMTQKYKLRPK 512 (749)
Q Consensus 437 ~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~ 512 (749)
..+.| +..+-.-...+.+.|+.++|.-.|+..+. +.| +-..|..|+..|...|...+|.-.-+...+. +..+
T Consensus 326 ~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~--Lap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~--~~~s 401 (564)
T KOG1174|consen 326 CIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQM--LAPYRLEIYRGLFHSYLAQKRFKEANALANWTIRL--FQNS 401 (564)
T ss_pred HhccCcccchHHHhccHHHHhccchHHHHHHHHHHHh--cchhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH--hhcc
Confidence 55333 33333223456667777777777777766 444 3457777777777777777776655544432 1222
Q ss_pred hHHHHHH---HHHHHHcCCHHHHHHHHHhC-CCCCC-HHhHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCchhHHHHH
Q 004487 513 KEHYASM---VDILCRSGCFDEAEKLMAQM-PFEPD-EIMWSSVINSCRIHKNLEFAKKAADQLFKMEKLRDAAPYVAMS 587 (749)
Q Consensus 513 ~~~~~~l---i~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 587 (749)
..+...+ |...-- .--++|.+++++. ..+|+ ...-+.+...|...|..+.++.++++.+...| |....+.|+
T Consensus 402 A~~LtL~g~~V~~~dp-~~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~--D~~LH~~Lg 478 (564)
T KOG1174|consen 402 ARSLTLFGTLVLFPDP-RMREKAKKFAEKSLKINPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIFP--DVNLHNHLG 478 (564)
T ss_pred hhhhhhhcceeeccCc-hhHHHHHHHHHhhhccCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhhcc--ccHHHHHHH
Confidence 2222222 111111 1225677777766 56666 33445555667777777777777777777766 677777777
Q ss_pred HHHHHcCCchhHHHHHHHHHh
Q 004487 588 NIYAVAGQWESVSQVKKAMRE 608 (749)
Q Consensus 588 ~~~~~~g~~~~a~~~~~~m~~ 608 (749)
+++...+.+.+|...+.....
T Consensus 479 d~~~A~Ne~Q~am~~y~~ALr 499 (564)
T KOG1174|consen 479 DIMRAQNEPQKAMEYYYKALR 499 (564)
T ss_pred HHHHHhhhHHHHHHHHHHHHh
Confidence 777777777777777766543
No 85
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.74 E-value=3.8e-05 Score=83.41 Aligned_cols=277 Identities=12% Similarity=0.080 Sum_probs=157.3
Q ss_pred HHHHHHHHhcC---CCCcccHHHHHHHHHhCCChhHHHHHHHHHHHCCCCcCHHhHHHHHHHhcccCcHHHHHHHHHHHH
Q 004487 327 EEAKEIFANLS---HISTVPWTAMISAYVQKGNLEEALNLFIEMCRANISADQATFASILRASAELASLSLGKQLHSFVI 403 (749)
Q Consensus 327 ~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~ 403 (749)
..|...+.... ..+...||.|--. ...|++.-|..-|-+-... -+-+..+|..+--.|....+.+.|.+.+....
T Consensus 800 ~~Ai~c~KkaV~L~ann~~~WnaLGVl-sg~gnva~aQHCfIks~~s-ep~~~~~W~NlgvL~l~n~d~E~A~~af~~~q 877 (1238)
T KOG1127|consen 800 CTAIRCCKKAVSLCANNEGLWNALGVL-SGIGNVACAQHCFIKSRFS-EPTCHCQWLNLGVLVLENQDFEHAEPAFSSVQ 877 (1238)
T ss_pred HHHHHHHHHHHHHhhccHHHHHHHHHh-hccchhhhhhhhhhhhhhc-cccchhheeccceeEEecccHHHhhHHHHhhh
Confidence 35556665543 3455667776544 5556666666666544432 12355677777777778888888888887776
Q ss_pred HhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhC-----C---CCCcchHHHHHHHHHhcCCHHHHHHHHHHHHH-----
Q 004487 404 RSGFMSNVFSGSALLDMYAKSGSLKDAIQTFKEM-----P---ERNIVSWNALISACAQNGDAQATLKSFEDMVQ----- 470 (749)
Q Consensus 404 ~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~-----~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~----- 470 (749)
.... .+...+--....-...|+.-++..+|..- . -++..-|-.-..-..++|+.++-+...+.+-.
T Consensus 878 SLdP-~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~te~h~~Ng~~e~~I~t~~ki~sAs~al 956 (1238)
T KOG1127|consen 878 SLDP-LNLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCATEIHLQNGNIEESINTARKISSASLAL 956 (1238)
T ss_pred hcCc-hhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHHHHHHHhccchHHHHHHhhhhhhhHHHH
Confidence 5432 22222222222233556677777777652 1 14444555544555667766554444333222
Q ss_pred ----CCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHH----HHHHHHHcCCHHHHHHHHHhCCCC
Q 004487 471 ----SGYQPDSVSLLSVLSACSHCGLIEEGLQYFNSMTQKYKLRPKKEHYAS----MVDILCRSGCFDEAEKLMAQMPFE 542 (749)
Q Consensus 471 ----~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~----li~~~~~~g~~~~A~~~~~~~~~~ 542 (749)
.|.+-+...|........+.+....+.+...+...-...+-+...|+. ....+...|.++.|..-+...+.+
T Consensus 957 ~~yf~~~p~~~fAy~~~gstlEhL~ey~~a~ela~RliglLe~k~d~sqynvak~~~gRL~lslgefe~A~~a~~~~~~e 1036 (1238)
T KOG1127|consen 957 SYYFLGHPQLCFAYAANGSTLEHLEEYRAALELATRLIGLLELKLDESQYNVAKPDAGRLELSLGEFESAKKASWKEWME 1036 (1238)
T ss_pred HHHHhcCcchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhhcchhhHhhhhcccchh
Confidence 123344567777777777777777777666554321112234444442 344566678888777777666555
Q ss_pred CCHHhHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCchh---HHHHHHHHHHcCCchhHHHHHHHHHh
Q 004487 543 PDEIMWSSVINSCRIHKNLEFAKKAADQLFKMEKLRDAAP---YVAMSNIYAVAGQWESVSQVKKAMRE 608 (749)
Q Consensus 543 p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~---~~~l~~~~~~~g~~~~a~~~~~~m~~ 608 (749)
.|..+-.+-+..+ -.++++++...|++++.+.. .+... ...++.....++.-+.|...+-+...
T Consensus 1037 vdEdi~gt~l~lF-fkndf~~sl~~fe~aLsis~-se~d~vvLl~kva~~~g~~~~k~~A~~lLfe~~~ 1103 (1238)
T KOG1127|consen 1037 VDEDIRGTDLTLF-FKNDFFSSLEFFEQALSISN-SESDKVVLLCKVAVCMGLARQKNDAQFLLFEVKS 1103 (1238)
T ss_pred HHHHHhhhhHHHH-HHhHHHHHHHHHHHHhhhcc-cccchhhhhHHHHHHHhhcccchHHHHHHHHHHH
Confidence 5555555555543 34788899999999888765 33332 22333344455666666665554443
No 86
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.69 E-value=0.00061 Score=72.72 Aligned_cols=116 Identities=12% Similarity=0.048 Sum_probs=60.5
Q ss_pred cchhHHHHHHHHcCCChHHHHHHHhcCCC-C----------CcchHHHHHH-HHHcCCChhHHHHHHHHhHhcCCCCCCc
Q 004487 6 TVSTNMLISGYVKSGNLATARELFNSMVD-R----------TAVSWTILIG-GYSQKNQFREAFKLFVDMRTDGGSDPDY 73 (749)
Q Consensus 6 ~~~~~~ll~~~~~~g~~~~A~~~f~~~~~-~----------~~~~~~~li~-~~~~~g~~~~a~~l~~~m~~~~g~~p~~ 73 (749)
-.+|..+-+++.+..+++=|.-.+-.|.. + |..--.+-.. .-.+-|-.++|..+|++-++.
T Consensus 757 ~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~e~eakvAvLAieLgMlEeA~~lYr~ckR~------- 829 (1416)
T KOG3617|consen 757 DSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGEEDEAKVAVLAIELGMLEEALILYRQCKRY------- 829 (1416)
T ss_pred hHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCcchhhHHHHHHHHHhhHHHHHHHHHHHHHH-------
Confidence 35677777788887777777666666632 0 1100011111 123456677777777766542
Q ss_pred chHHHHHHhcCCCCChHHHHHHHHHHHHhCCCCchhHHHHHHHHhHcCCChhHHHHHHccC
Q 004487 74 VTFATLLSGCSEPDTANELIQVHADIIKFGYNSILIICNSLVDSYCKIRCLDLARRVFKEM 134 (749)
Q Consensus 74 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 134 (749)
..+=+.|-..|.|++|.++-+.--+-.+. .||-....-+-..++.+.|++.|++-
T Consensus 830 ---DLlNKlyQs~g~w~eA~eiAE~~DRiHLr---~Tyy~yA~~Lear~Di~~AleyyEK~ 884 (1416)
T KOG3617|consen 830 ---DLLNKLYQSQGMWSEAFEIAETKDRIHLR---NTYYNYAKYLEARRDIEAALEYYEKA 884 (1416)
T ss_pred ---HHHHHHHHhcccHHHHHHHHhhccceehh---hhHHHHHHHHHhhccHHHHHHHHHhc
Confidence 22223344566777777665543322222 23333333334456666666666654
No 87
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.69 E-value=6.7e-07 Score=84.43 Aligned_cols=226 Identities=15% Similarity=0.124 Sum_probs=180.1
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhcCC--CCcccHHHHHHHHHhCCChhHHHHHHHHHHHCCCCcCHHhHH-HHHHHhcccC
Q 004487 314 NSLVDMYAKCGRFEEAKEIFANLSH--ISTVPWTAMISAYVQKGNLEEALNLFIEMCRANISADQATFA-SILRASAELA 390 (749)
Q Consensus 314 ~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~-~ll~~~~~~~ 390 (749)
+-+..+|.+.|.+.+|.+.|+...+ +-+.+|-.|-..|.+..+++.|+.+|.+-.+. .|-.+||. ...+.+-..+
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q~~~~dTfllLskvY~ridQP~~AL~~~~~gld~--fP~~VT~l~g~ARi~eam~ 304 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQFPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS--FPFDVTYLLGQARIHEAME 304 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhcCCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc--CCchhhhhhhhHHHHHHHH
Confidence 5678889999999999999987653 56677888889999999999999999988764 67777765 4556667788
Q ss_pred cHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCC---CCCcchHHHHHHHHHhcCCHHHHHHHHHH
Q 004487 391 SLSLGKQLHSFVIRSGFMSNVFSGSALLDMYAKSGSLKDAIQTFKEMP---ERNIVSWNALISACAQNGDAQATLKSFED 467 (749)
Q Consensus 391 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 467 (749)
..+.+.++++.+.+.. +.++....++...|.-.++.+-|...++++. -.+...|+.+.-+|.-.++++-++.-|++
T Consensus 305 ~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~speLf~NigLCC~yaqQ~D~~L~sf~R 383 (478)
T KOG1129|consen 305 QQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQSPELFCNIGLCCLYAQQIDLVLPSFQR 383 (478)
T ss_pred hHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHHhcCCChHHHhhHHHHHHhhcchhhhHHHHHH
Confidence 8999999999888764 3355555667777888899999999999876 46777888888888889999999999999
Q ss_pred HHHCCCCCCHH--HHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC
Q 004487 468 MVQSGYQPDSV--SLLSVLSACSHCGLIEEGLQYFNSMTQKYKLRPKKEHYASMVDILCRSGCFDEAEKLMAQM-PFEPD 544 (749)
Q Consensus 468 m~~~g~~p~~~--t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~ 544 (749)
.+..--.|+.. .|..+.......|++..|.+.|+-.... -....+.++.|.-+-.|.|++++|..+++.. ...|+
T Consensus 384 Alstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~--d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~~P~ 461 (478)
T KOG1129|consen 384 ALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTS--DAQHGEALNNLAVLAARSGDILGARSLLNAAKSVMPD 461 (478)
T ss_pred HHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhcc--CcchHHHHHhHHHHHhhcCchHHHHHHHHHhhhhCcc
Confidence 88865556654 5666777778899999999999876632 2334677888888888999999999999887 44455
No 88
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=98.68 E-value=2.1e-05 Score=83.73 Aligned_cols=282 Identities=16% Similarity=0.167 Sum_probs=152.9
Q ss_pred HHhcCCHHHHHHHHHhcCC--CCccc-HHHHHHHHHhCCChhHHHHHHHHHHHCCCCcCHHhHHHHHHHhc----c--cC
Q 004487 320 YAKCGRFEEAKEIFANLSH--ISTVP-WTAMISAYVQKGNLEEALNLFIEMCRANISADQATFASILRASA----E--LA 390 (749)
Q Consensus 320 ~~~~g~~~~A~~~~~~~~~--~~~~~-~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~----~--~~ 390 (749)
+...|+.++|.+.++.-.. .|..+ .......+.+.|+.++|..+++.+.+. .|+...|-..+..|. . ..
T Consensus 14 l~e~g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~r--NPdn~~Yy~~L~~~~g~~~~~~~~ 91 (517)
T PF12569_consen 14 LEEAGDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDR--NPDNYDYYRGLEEALGLQLQLSDE 91 (517)
T ss_pred HHHCCCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHhhhcccccc
Confidence 4556666666666655432 23223 334445566666666666666666664 355555554444443 1 11
Q ss_pred cHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHH-HHHHHHhhCCCCCc-chHHHHHHHHHhcCCHHHHHHHHHHH
Q 004487 391 SLSLGKQLHSFVIRSGFMSNVFSGSALLDMYAKSGSLK-DAIQTFKEMPERNI-VSWNALISACAQNGDAQATLKSFEDM 468 (749)
Q Consensus 391 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~-~A~~~~~~~~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~m 468 (749)
+.+...++++.+...-.. ......+.-.+.....+. .+...+..+..+.+ .+|+.+-..|.......-..+++...
T Consensus 92 ~~~~~~~~y~~l~~~yp~--s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPslF~~lk~Ly~d~~K~~~i~~l~~~~ 169 (517)
T PF12569_consen 92 DVEKLLELYDELAEKYPR--SDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPSLFSNLKPLYKDPEKAAIIESLVEEY 169 (517)
T ss_pred cHHHHHHHHHHHHHhCcc--ccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHcChhHHHHHHHHHHHH
Confidence 344444555544333211 111111111111111111 12222233333332 34555555555444444444455444
Q ss_pred HHC----C----------CCCCHH--HHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHHHcCCHHH
Q 004487 469 VQS----G----------YQPDSV--SLLSVLSACSHCGLIEEGLQYFNSMTQKYKLRPK-KEHYASMVDILCRSGCFDE 531 (749)
Q Consensus 469 ~~~----g----------~~p~~~--t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~~ 531 (749)
... | -.|... ++..+...|.+.|++++|+++.+.... ..|+ ++.|..-...|-+.|++++
T Consensus 170 ~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~---htPt~~ely~~KarilKh~G~~~~ 246 (517)
T PF12569_consen 170 VNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIE---HTPTLVELYMTKARILKHAGDLKE 246 (517)
T ss_pred HHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHh---cCCCcHHHHHHHHHHHHHCCCHHH
Confidence 332 1 123332 444455567788888888888887774 3565 6777778888888888888
Q ss_pred HHHHHHhC-CCCC-CHHhHHHHHHHHHhcCCHHHHHHHHHHHhcCCC--CCCc------hhHHHHHHHHHHcCCchhHHH
Q 004487 532 AEKLMAQM-PFEP-DEIMWSSVINSCRIHKNLEFAKKAADQLFKMEK--LRDA------APYVAMSNIYAVAGQWESVSQ 601 (749)
Q Consensus 532 A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~--~~~~------~~~~~l~~~~~~~g~~~~a~~ 601 (749)
|.+.++.. ...+ |..+-+-....+.+.|++++|+.++......+. ..|. ....-.+.+|.+.|++..|.+
T Consensus 247 Aa~~~~~Ar~LD~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk 326 (517)
T PF12569_consen 247 AAEAMDEARELDLADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALK 326 (517)
T ss_pred HHHHHHHHHhCChhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 88888877 3333 444444455566788888888888887766552 1111 112356778888888888888
Q ss_pred HHHHHHh
Q 004487 602 VKKAMRE 608 (749)
Q Consensus 602 ~~~~m~~ 608 (749)
.+....+
T Consensus 327 ~~~~v~k 333 (517)
T PF12569_consen 327 RFHAVLK 333 (517)
T ss_pred HHHHHHH
Confidence 7766543
No 89
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.67 E-value=0.00086 Score=79.78 Aligned_cols=195 Identities=11% Similarity=0.090 Sum_probs=99.9
Q ss_pred HHHHHHHHhcCCHHHHHHHHhhCCC-------CC----cchHHHHHHHHHhcCCHHHHHHHHHHHHHCC--CCCC--HHH
Q 004487 415 SALLDMYAKSGSLKDAIQTFKEMPE-------RN----IVSWNALISACAQNGDAQATLKSFEDMVQSG--YQPD--SVS 479 (749)
Q Consensus 415 ~~li~~y~~~g~~~~A~~~~~~~~~-------~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g--~~p~--~~t 479 (749)
..+...+...|+++.|...+++... ++ ...+..+...+...|++++|...+.+..... ..+. ..+
T Consensus 535 ~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~ 614 (903)
T PRK04841 535 LQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQC 614 (903)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHH
Confidence 3344455555666666555544321 01 1122333344555577777776666654421 1121 123
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHH-----HHHHHHHHHcCCHHHHHHHHHhCCC-C-CCH----HhH
Q 004487 480 LLSVLSACSHCGLIEEGLQYFNSMTQKYKLRPKKEHY-----ASMVDILCRSGCFDEAEKLMAQMPF-E-PDE----IMW 548 (749)
Q Consensus 480 ~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~-----~~li~~~~~~g~~~~A~~~~~~~~~-~-p~~----~~~ 548 (749)
+..+.......|+.++|.+.+.....-.........+ ......+...|+.++|.+.+..... . ... ..+
T Consensus 615 ~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~ 694 (903)
T PRK04841 615 LAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQW 694 (903)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHH
Confidence 3334445566777777777666654321111100001 0112334456777777777666521 1 111 113
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhcCCCC-----CCchhHHHHHHHHHHcCCchhHHHHHHHHHhC
Q 004487 549 SSVINSCRIHKNLEFAKKAADQLFKMEKL-----RDAAPYVAMSNIYAVAGQWESVSQVKKAMRER 609 (749)
Q Consensus 549 ~~ll~~~~~~g~~~~a~~~~~~~~~~~~~-----~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 609 (749)
..+..++...|+.++|...++++.+.... ....++..++.+|...|+.++|...+.+..+.
T Consensus 695 ~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~l 760 (903)
T PRK04841 695 RNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKL 760 (903)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 34555566777777777777777654210 12235667777777888888887777777654
No 90
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=98.67 E-value=4.5e-06 Score=75.56 Aligned_cols=192 Identities=13% Similarity=0.113 Sum_probs=151.2
Q ss_pred HHHHHHHHhcCCHHHHHHHHhhCCCC---CcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHhcc
Q 004487 415 SALLDMYAKSGSLKDAIQTFKEMPER---NIVSWNALISACAQNGDAQATLKSFEDMVQSGYQPDSV-SLLSVLSACSHC 490 (749)
Q Consensus 415 ~~li~~y~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~ 490 (749)
..|.-.|...|+...|.+-+++..+. +..+|..+...|.+.|+.+.|.+.|++..+ +.|+.- ..|....-+|..
T Consensus 39 lqLal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAls--l~p~~GdVLNNYG~FLC~q 116 (250)
T COG3063 39 LQLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALS--LAPNNGDVLNNYGAFLCAQ 116 (250)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHh--cCCCccchhhhhhHHHHhC
Confidence 45667788999999999999888743 345788888888999999999999999888 566543 566666667788
Q ss_pred CCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC-HHhHHHHHHHHHhcCCHHHHHHHH
Q 004487 491 GLIEEGLQYFNSMTQKYKLRPKKEHYASMVDILCRSGCFDEAEKLMAQM-PFEPD-EIMWSSVINSCRIHKNLEFAKKAA 568 (749)
Q Consensus 491 g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~ 568 (749)
|.+++|.+.|+.....-...-...+|..++-+-.+.|+.+.|.+.+++. ...|+ ..+.-.+.......|++-.|...+
T Consensus 117 g~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~Ar~~~ 196 (250)
T COG3063 117 GRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAPARLYL 196 (250)
T ss_pred CChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchHHHHHH
Confidence 8999999999888765333334567888888888999999999999887 44453 556667777788889999999999
Q ss_pred HHHhcCCCCCCchhHHHHHHHHHHcCCchhHHHHHHHHHhC
Q 004487 569 DQLFKMEKLRDAAPYVAMSNIYAVAGQWESVSQVKKAMRER 609 (749)
Q Consensus 569 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 609 (749)
++.....+ .+.....+.+.+-.+.|+-+.+.+.-..+...
T Consensus 197 ~~~~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~ 236 (250)
T COG3063 197 ERYQQRGG-AQAESLLLGIRIAKRLGDRAAAQRYQAQLQRL 236 (250)
T ss_pred HHHHhccc-ccHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 99988888 88888888888888999988888877776543
No 91
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.66 E-value=4.6e-07 Score=89.61 Aligned_cols=148 Identities=10% Similarity=0.087 Sum_probs=100.2
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHH---HHHHHHHHHHcCC
Q 004487 452 CAQNGDAQATLKSFEDMVQSGYQPDSVSLLSVLSACSHCGLIEEGLQYFNSMTQKYKLRPKKEH---YASMVDILCRSGC 528 (749)
Q Consensus 452 ~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~---~~~li~~~~~~g~ 528 (749)
+...|++++|++++++- .+.......+..|...++++.|.+.++.|.+ +..|... ..+++..+.-.+.
T Consensus 112 ~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~---~~eD~~l~qLa~awv~l~~g~e~ 182 (290)
T PF04733_consen 112 LFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNMQQ---IDEDSILTQLAEAWVNLATGGEK 182 (290)
T ss_dssp HCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHC---CSCCHHHHHHHHHHHHHHHTTTC
T ss_pred HHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHHHh---cCCcHHHHHHHHHHHHHHhCchh
Confidence 34456777777666532 2444555566667777777777777777762 3344321 2233443333346
Q ss_pred HHHHHHHHHhC--CCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHcCCc-hhHHHHHHH
Q 004487 529 FDEAEKLMAQM--PFEPDEIMWSSVINSCRIHKNLEFAKKAADQLFKMEKLRDAAPYVAMSNIYAVAGQW-ESVSQVKKA 605 (749)
Q Consensus 529 ~~~A~~~~~~~--~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~a~~~~~~ 605 (749)
+.+|..+|+++ ...+++.+.+.+..++...|++++|+.+++++++.+| .++.+...++-+....|+. +.+.+++.+
T Consensus 183 ~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~-~~~d~LaNliv~~~~~gk~~~~~~~~l~q 261 (290)
T PF04733_consen 183 YQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDP-NDPDTLANLIVCSLHLGKPTEAAERYLSQ 261 (290)
T ss_dssp CCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-C-CHHHHHHHHHHHHHHTT-TCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhcc-CCHHHHHHHHHHHHHhCCChhHHHHHHHH
Confidence 88888888888 4456778888888888999999999999999999999 8888988999888899988 667788888
Q ss_pred HHhC
Q 004487 606 MRER 609 (749)
Q Consensus 606 m~~~ 609 (749)
+++.
T Consensus 262 L~~~ 265 (290)
T PF04733_consen 262 LKQS 265 (290)
T ss_dssp CHHH
T ss_pred HHHh
Confidence 7654
No 92
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.65 E-value=1.2e-06 Score=89.44 Aligned_cols=245 Identities=12% Similarity=0.104 Sum_probs=163.1
Q ss_pred CcHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCC---CCcchHHHHHHHHHhcCCHHHHHHHHH
Q 004487 390 ASLSLGKQLHSFVIRSGFMSNVFSGSALLDMYAKSGSLKDAIQTFKEMPE---RNIVSWNALISACAQNGDAQATLKSFE 466 (749)
Q Consensus 390 ~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~ 466 (749)
|++.+|.-.++..++.. +.+...|--|...-+..++-..|+..+++..+ .|....-+|.-.|...|.-.+|+..++
T Consensus 299 G~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~Al~~L~ 377 (579)
T KOG1125|consen 299 GDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQALKMLD 377 (579)
T ss_pred CCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHHHHHHHH
Confidence 33444444444443332 22344444444445555555555555555543 334455555666777777778888777
Q ss_pred HHHHCCCC-----C---CHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHh
Q 004487 467 DMVQSGYQ-----P---DSVSLLSVLSACSHCGLIEEGLQYFNSMTQKYKLRPKKEHYASMVDILCRSGCFDEAEKLMAQ 538 (749)
Q Consensus 467 ~m~~~g~~-----p---~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 538 (749)
.-+....+ + +..+-.. ....+...+....++|-.+....+..+|++++.+|.-+|.-.|++++|.+-|+.
T Consensus 378 ~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDcf~~ 455 (579)
T KOG1125|consen 378 KWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDCFEA 455 (579)
T ss_pred HHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHHHHH
Confidence 76553210 0 0000000 122233345566677777776667678899999999999999999999999999
Q ss_pred C-CCCC-CHHhHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHcCCchhHHHHHHHHHhCCCccCCc
Q 004487 539 M-PFEP-DEIMWSSVINSCRIHKNLEFAKKAADQLFKMEKLRDAAPYVAMSNIYAVAGQWESVSQVKKAMRERGVRKVTA 616 (749)
Q Consensus 539 ~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~ 616 (749)
+ .++| |...||-|...+......++|+.+|++++++.| .-......|+-.|...|.+++|.+.+-......-+.
T Consensus 456 AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP-~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~mq~ks--- 531 (579)
T KOG1125|consen 456 ALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQP-GYVRVRYNLGISCMNLGAYKEAVKHLLEALSMQRKS--- 531 (579)
T ss_pred HHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCC-CeeeeehhhhhhhhhhhhHHHHHHHHHHHHHhhhcc---
Confidence 8 7788 588999999999999999999999999999999 888888899999999999999999887765432111
Q ss_pred eeEEEeCCEEEEEEeCCCCCcChHHHHHHHHHHHHHHH
Q 004487 617 YSWVELKSKVHVFTANDELHPQTNEIRRKIENLMQEMK 654 (749)
Q Consensus 617 ~s~~~~~~~~~~f~~~~~~~~~~~~~~~~l~~l~~~m~ 654 (749)
....+..++ .+.|+..|...+..|.
T Consensus 532 ------------~~~~~~~~~-se~iw~tLR~als~~~ 556 (579)
T KOG1125|consen 532 ------------RNHNKAPMA-SENIWQTLRLALSAMN 556 (579)
T ss_pred ------------cccccCCcc-hHHHHHHHHHHHHHcC
Confidence 001112233 5778888876666654
No 93
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=98.64 E-value=1.2e-05 Score=85.66 Aligned_cols=256 Identities=11% Similarity=0.069 Sum_probs=181.0
Q ss_pred HHHHhCCChhHHHHHHHHHHHCCCCcCHHhH-HHHHHHhcccCcHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhc---
Q 004487 349 SAYVQKGNLEEALNLFIEMCRANISADQATF-ASILRASAELASLSLGKQLHSFVIRSGFMSNVFSGSALLDMYAKS--- 424 (749)
Q Consensus 349 ~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~-~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~--- 424 (749)
..+...|++++|++.+..-.. ..+|..++ ......+.++|+.++|..++..+++.+. .+..-|..|..+..-.
T Consensus 12 ~il~e~g~~~~AL~~L~~~~~--~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNP-dn~~Yy~~L~~~~g~~~~~ 88 (517)
T PF12569_consen 12 SILEEAGDYEEALEHLEKNEK--QILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNP-DNYDYYRGLEEALGLQLQL 88 (517)
T ss_pred HHHHHCCCHHHHHHHHHhhhh--hCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCC-CcHHHHHHHHHHHhhhccc
Confidence 456788999999999977543 35565544 4566778999999999999999999874 3555566666665322
Q ss_pred --CCHHHHHHHHhhCCC--CCcchHHHHHHHHHhcCCH-HHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHH
Q 004487 425 --GSLKDAIQTFKEMPE--RNIVSWNALISACAQNGDA-QATLKSFEDMVQSGYQPDSVSLLSVLSACSHCGLIEEGLQY 499 (749)
Q Consensus 425 --g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~-~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~ 499 (749)
...+...++++++.+ |.......+.-.+.....+ ..+...+..+...|+++ +|+.|-..|......+-..++
T Consensus 89 ~~~~~~~~~~~y~~l~~~yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPs---lF~~lk~Ly~d~~K~~~i~~l 165 (517)
T PF12569_consen 89 SDEDVEKLLELYDELAEKYPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPS---LFSNLKPLYKDPEKAAIIESL 165 (517)
T ss_pred ccccHHHHHHHHHHHHHhCccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCch---HHHHHHHHHcChhHHHHHHHH
Confidence 256777788887753 2222222222222222223 24556677788888765 455555556555555555555
Q ss_pred HHHhHHhc-------------CCCCChHHH--HHHHHHHHHcCCHHHHHHHHHhC-CCCCC-HHhHHHHHHHHHhcCCHH
Q 004487 500 FNSMTQKY-------------KLRPKKEHY--ASMVDILCRSGCFDEAEKLMAQM-PFEPD-EIMWSSVINSCRIHKNLE 562 (749)
Q Consensus 500 ~~~m~~~~-------------~~~p~~~~~--~~li~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~ 562 (749)
+....... .-.|+...| .-+...|.+.|++++|++++++. ...|+ +..|..-...+.+.|+++
T Consensus 166 ~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~~~ 245 (517)
T PF12569_consen 166 VEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARILKHAGDLK 245 (517)
T ss_pred HHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHH
Confidence 55544321 012333333 45678899999999999999987 66776 667777888899999999
Q ss_pred HHHHHHHHHhcCCCCCCchhHHHHHHHHHHcCCchhHHHHHHHHHhCCC
Q 004487 563 FAKKAADQLFKMEKLRDAAPYVAMSNIYAVAGQWESVSQVKKAMRERGV 611 (749)
Q Consensus 563 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~ 611 (749)
+|...++.+.++++ .|.....-.+.-+.++|+.++|.++.......+.
T Consensus 246 ~Aa~~~~~Ar~LD~-~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~ 293 (517)
T PF12569_consen 246 EAAEAMDEARELDL-ADRYINSKCAKYLLRAGRIEEAEKTASLFTREDV 293 (517)
T ss_pred HHHHHHHHHHhCCh-hhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCC
Confidence 99999999999999 9999999999999999999999999998866654
No 94
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=98.63 E-value=0.0002 Score=74.67 Aligned_cols=379 Identities=14% Similarity=0.130 Sum_probs=217.9
Q ss_pred CChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHcCCChHHHHHHHccCCC---CCcchHHHHHHHHHhcCChhHHHHHHH
Q 004487 188 ADIALGRQVHAFVVKTNFVENVFVANALLDLYSKHDCVVEARKLFGEMPE---VDGVSYNVMITCYAWNEQYKESLKLFR 264 (749)
Q Consensus 188 ~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~ 264 (749)
+++..+.+..+.+++ +.+....+.....-.+...|+-++|......-.. ++.+.|..+.-.+-...++++|+..|+
T Consensus 21 kQYkkgLK~~~~iL~-k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK~Y~eaiKcy~ 99 (700)
T KOG1156|consen 21 KQYKKGLKLIKQILK-KFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDKKYDEAIKCYR 99 (700)
T ss_pred HHHHhHHHHHHHHHH-hCCccchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHHhhhhhHHHHHHHHH
Confidence 344444444444444 2222222222222234456777777776665544 456778888777777788899999888
Q ss_pred HHHHCCCCCCcchHHHHHHHHHccCChHHHHHHHHHHHHhcCCcchhHHHHHHHHHHhcCCHHHHHHHHHhcC---CCCc
Q 004487 265 ELQFTRFDRSQFPFSTLLSVVANKLDLQIGRQIHTQTIVTTAISEVKVANSLVDMYAKCGRFEEAKEIFANLS---HIST 341 (749)
Q Consensus 265 ~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~ 341 (749)
..... .||. ..++.-|.-.-++.++++.....-.... ....
T Consensus 100 nAl~~--~~dN----------------------------------~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~~r 143 (700)
T KOG1156|consen 100 NALKI--EKDN----------------------------------LQILRDLSLLQIQMRDYEGYLETRNQLLQLRPSQR 143 (700)
T ss_pred HHHhc--CCCc----------------------------------HHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhH
Confidence 87654 2332 2223333333344444444444333332 2344
Q ss_pred ccHHHHHHHHHhCCChhHHHHHHHHHHHCC-CCcCHHhHHHHHH------HhcccCcHHHHHHHHHHHHHhCCCCchhHH
Q 004487 342 VPWTAMISAYVQKGNLEEALNLFIEMCRAN-ISADQATFASILR------ASAELASLSLGKQLHSFVIRSGFMSNVFSG 414 (749)
Q Consensus 342 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g-~~p~~~t~~~ll~------~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 414 (749)
..|..+..++.-.|++..|..+.++..+.. -.|+...+..... .....|.++.+.+.+...... +......-
T Consensus 144 a~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~-i~Dkla~~ 222 (700)
T KOG1156|consen 144 ASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQ-IVDKLAFE 222 (700)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhH-HHHHHHHh
Confidence 568888889999999999999998887754 2456555543322 234556666666554433221 11122223
Q ss_pred HHHHHHHHhcCCHHHHHHHHhhCCC--CCcchHHHHH-HHHHhcCCHHHHH-HHHHHHHHCCCCCCHHHHH-HHHHHHhc
Q 004487 415 SALLDMYAKSGSLKDAIQTFKEMPE--RNIVSWNALI-SACAQNGDAQATL-KSFEDMVQSGYQPDSVSLL-SVLSACSH 489 (749)
Q Consensus 415 ~~li~~y~~~g~~~~A~~~~~~~~~--~~~~~~~~li-~~~~~~g~~~~A~-~~~~~m~~~g~~p~~~t~~-~ll~a~~~ 489 (749)
-.-.+.+.+.+++++|..++..+.. ||-.-|.-.. .++.+-.+.-+++ .+|....+. .|-...-. .=++....
T Consensus 223 e~ka~l~~kl~~lEeA~~~y~~Ll~rnPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~--y~r~e~p~Rlplsvl~~ 300 (700)
T KOG1156|consen 223 ETKADLLMKLGQLEEAVKVYRRLLERNPDNLDYYEGLEKALGKIKDMLEALKALYAILSEK--YPRHECPRRLPLSVLNG 300 (700)
T ss_pred hhHHHHHHHHhhHHhHHHHHHHHHhhCchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhc--CcccccchhccHHHhCc
Confidence 3456678889999999999998874 5545554443 3443333444444 666666552 22221111 11111222
Q ss_pred cCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHHcCCHHH----HHHHHHhC-C------------CCCCHHhHHHH-
Q 004487 490 CGLIEEGLQYFNSMTQKYKLRPKKEHYASMVDILCRSGCFDE----AEKLMAQM-P------------FEPDEIMWSSV- 551 (749)
Q Consensus 490 ~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~----A~~~~~~~-~------------~~p~~~~~~~l- 551 (749)
....+..-.++..+.++ |+++- +..+...|-.-...+- +.++...+ + -.|....|...
T Consensus 301 eel~~~vdkyL~~~l~K-g~p~v---f~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~ 376 (700)
T KOG1156|consen 301 EELKEIVDKYLRPLLSK-GVPSV---FKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYF 376 (700)
T ss_pred chhHHHHHHHHHHHhhc-CCCch---hhhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHH
Confidence 22233344445455443 66542 3333333332221111 22222222 1 25677778764
Q ss_pred -HHHHHhcCCHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHcCCchhHHHHHHHHHhCCC
Q 004487 552 -INSCRIHKNLEFAKKAADQLFKMEKLRDAAPYVAMSNIYAVAGQWESVSQVKKAMRERGV 611 (749)
Q Consensus 552 -l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~ 611 (749)
...+-..|+++.|+...+.+++--| .-...|..-+.++..+|..++|..+++..++...
T Consensus 377 laqh~D~~g~~~~A~~yId~AIdHTP-TliEly~~KaRI~kH~G~l~eAa~~l~ea~elD~ 436 (700)
T KOG1156|consen 377 LAQHYDKLGDYEVALEYIDLAIDHTP-TLIELYLVKARIFKHAGLLDEAAAWLDEAQELDT 436 (700)
T ss_pred HHHHHHHcccHHHHHHHHHHHhccCc-hHHHHHHHHHHHHHhcCChHHHHHHHHHHHhccc
Confidence 4457788999999999999999888 7778888888999999999999999999877543
No 95
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.60 E-value=9e-05 Score=77.44 Aligned_cols=295 Identities=11% Similarity=-0.019 Sum_probs=177.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhcC---CCCccc---HHHHHHHHHhCCChhHHHHHHHHHHHCCCCcCH-HhHHH---H
Q 004487 313 ANSLVDMYAKCGRFEEAKEIFANLS---HISTVP---WTAMISAYVQKGNLEEALNLFIEMCRANISADQ-ATFAS---I 382 (749)
Q Consensus 313 ~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~---~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~---l 382 (749)
+..+...+...|+.+.+.+.+.... ..+... .......+...|++++|.+.+++..+. .|+. ..+.. .
T Consensus 9 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~--~P~~~~a~~~~~~~ 86 (355)
T cd05804 9 HAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDD--YPRDLLALKLHLGA 86 (355)
T ss_pred HHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCcHHHHHHhHHH
Confidence 3444455555666666555544432 122222 222234566788999999999888775 3433 33331 1
Q ss_pred HHHhcccCcHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCC---CCcchHHHHHHHHHhcCCHH
Q 004487 383 LRASAELASLSLGKQLHSFVIRSGFMSNVFSGSALLDMYAKSGSLKDAIQTFKEMPE---RNIVSWNALISACAQNGDAQ 459 (749)
Q Consensus 383 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~ 459 (749)
.......+....+.+.... .....+........+...+...|++++|.+.+++..+ .+...+..+...+...|+++
T Consensus 87 ~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~ 165 (355)
T cd05804 87 FGLGDFSGMRDHVARVLPL-WAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFK 165 (355)
T ss_pred HHhcccccCchhHHHHHhc-cCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHH
Confidence 1112223444555554443 1112222334445566788899999999999998763 44567788888899999999
Q ss_pred HHHHHHHHHHHCCC-CCCH--HHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHH-H--HHHHHHHHcCCHHHHH
Q 004487 460 ATLKSFEDMVQSGY-QPDS--VSLLSVLSACSHCGLIEEGLQYFNSMTQKYKLRPKKEHY-A--SMVDILCRSGCFDEAE 533 (749)
Q Consensus 460 ~A~~~~~~m~~~g~-~p~~--~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~-~--~li~~~~~~g~~~~A~ 533 (749)
+|...+++...... .|+. ..+..+...+...|++++|..+++.........+..... + .+...+...|....+.
T Consensus 166 eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~ 245 (355)
T cd05804 166 EGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGD 245 (355)
T ss_pred HHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHH
Confidence 99999998887422 2332 234567778889999999999999875321111111111 1 3334444555433333
Q ss_pred HH---HHhC-CCCCC---HHhHHHHHHHHHhcCCHHHHHHHHHHHhcCCCC--------CCchhHHHHHHHHHHcCCchh
Q 004487 534 KL---MAQM-PFEPD---EIMWSSVINSCRIHKNLEFAKKAADQLFKMEKL--------RDAAPYVAMSNIYAVAGQWES 598 (749)
Q Consensus 534 ~~---~~~~-~~~p~---~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~--------~~~~~~~~l~~~~~~~g~~~~ 598 (749)
+. .... +..|. .........++...|+.+.|...++.+...... .........+.++...|++++
T Consensus 246 ~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~ 325 (355)
T cd05804 246 RWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYAT 325 (355)
T ss_pred HHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHH
Confidence 32 2211 11111 222234566678889999999999888664321 134556678888999999999
Q ss_pred HHHHHHHHHhCC
Q 004487 599 VSQVKKAMRERG 610 (749)
Q Consensus 599 a~~~~~~m~~~g 610 (749)
|.+.+......+
T Consensus 326 A~~~L~~al~~a 337 (355)
T cd05804 326 ALELLGPVRDDL 337 (355)
T ss_pred HHHHHHHHHHHH
Confidence 999999887654
No 96
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.53 E-value=0.00039 Score=66.76 Aligned_cols=290 Identities=13% Similarity=0.139 Sum_probs=200.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhcCCCCcccHHHHH---HHHHhCCChhHHHHHHHHHHHCCCCcCHHhHHH-HHHHhcc
Q 004487 313 ANSLVDMYAKCGRFEEAKEIFANLSHISTVPWTAMI---SAYVQKGNLEEALNLFIEMCRANISADQATFAS-ILRASAE 388 (749)
Q Consensus 313 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li---~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~-ll~~~~~ 388 (749)
.-.|...+.-.|++.+|..-|....+.|+..|-++. ..|...|+..-|+.-|....+ ++||-..-.. --..+.+
T Consensus 41 hlElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVle--lKpDF~~ARiQRg~vllK 118 (504)
T KOG0624|consen 41 HLELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLE--LKPDFMAARIQRGVVLLK 118 (504)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHh--cCccHHHHHHHhchhhhh
Confidence 334555666778888888888888887777776654 467788888888887877766 4676433221 1223567
Q ss_pred cCcHHHHHHHHHHHHHhCCCCc----h----------hHHHHHHHHHHhcCCHHHHHHHHhhCCC---CCcchHHHHHHH
Q 004487 389 LASLSLGKQLHSFVIRSGFMSN----V----------FSGSALLDMYAKSGSLKDAIQTFKEMPE---RNIVSWNALISA 451 (749)
Q Consensus 389 ~~~~~~a~~~~~~~~~~~~~~~----~----------~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~ 451 (749)
.|.++.|..=|..+++...... . ......+..+...|+...|+.....+.+ .|...|..-..+
T Consensus 119 ~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~~Wda~l~~~Rakc 198 (504)
T KOG0624|consen 119 QGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQPWDASLRQARAKC 198 (504)
T ss_pred cccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcCcchhHHHHHHHHH
Confidence 7888888888887777543211 1 1112233445667888888888877663 566777777888
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHH----HHHH---H----
Q 004487 452 CAQNGDAQATLKSFEDMVQSGYQPDSVSLLSVLSACSHCGLIEEGLQYFNSMTQKYKLRPKKEH----YASM---V---- 520 (749)
Q Consensus 452 ~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~----~~~l---i---- 520 (749)
|...|++..|+.=++...+.. .-|..++--+-..+...|+.+.++....+.. .+.|+... |-.| +
T Consensus 199 ~i~~~e~k~AI~Dlk~askLs-~DnTe~~ykis~L~Y~vgd~~~sL~~iRECL---KldpdHK~Cf~~YKklkKv~K~le 274 (504)
T KOG0624|consen 199 YIAEGEPKKAIHDLKQASKLS-QDNTEGHYKISQLLYTVGDAENSLKEIRECL---KLDPDHKLCFPFYKKLKKVVKSLE 274 (504)
T ss_pred HHhcCcHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHhhhhHHHHHHHHHHHH---ccCcchhhHHHHHHHHHHHHHHHH
Confidence 999999999988777665531 2334466666667788899988888887776 46676432 2211 1
Q ss_pred --HHHHHcCCHHHHHHHHHhC-CCCCC--HH---hHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHH
Q 004487 521 --DILCRSGCFDEAEKLMAQM-PFEPD--EI---MWSSVINSCRIHKNLEFAKKAADQLFKMEKLRDAAPYVAMSNIYAV 592 (749)
Q Consensus 521 --~~~~~~g~~~~A~~~~~~~-~~~p~--~~---~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 592 (749)
....+.+++.++.+-.+.. ...|. .+ .+..+-..++..+++.+|++...++++.+| +|..++.--+.+|..
T Consensus 275 s~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~-~dv~~l~dRAeA~l~ 353 (504)
T KOG0624|consen 275 SAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDIDP-DDVQVLCDRAEAYLG 353 (504)
T ss_pred HHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcCc-hHHHHHHHHHHHHhh
Confidence 2244566777766666554 44454 22 333344455788899999999999999999 999999999999999
Q ss_pred cCCchhHHHHHHHHHhC
Q 004487 593 AGQWESVSQVKKAMRER 609 (749)
Q Consensus 593 ~g~~~~a~~~~~~m~~~ 609 (749)
...+++|..-++...+.
T Consensus 354 dE~YD~AI~dye~A~e~ 370 (504)
T KOG0624|consen 354 DEMYDDAIHDYEKALEL 370 (504)
T ss_pred hHHHHHHHHHHHHHHhc
Confidence 99999999999888664
No 97
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.53 E-value=0.0027 Score=68.05 Aligned_cols=50 Identities=4% Similarity=0.084 Sum_probs=36.0
Q ss_pred CHHHHHHHHHHHhcCC----CCCCchhHHHHHHHHHHcCCchhHHHHHHHHHhC
Q 004487 560 NLEFAKKAADQLFKME----KLRDAAPYVAMSNIYAVAGQWESVSQVKKAMRER 609 (749)
Q Consensus 560 ~~~~a~~~~~~~~~~~----~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 609 (749)
|..+++.-.+.+++.. |.+-...|..|+..|....+|..|-+.++.|..+
T Consensus 1306 D~~~~i~qc~~lleep~ld~~Ir~~~~~a~lie~~v~~k~y~~AyRal~el~~k 1359 (1416)
T KOG3617|consen 1306 DAADGIRQCTTLLEEPILDDIIRCTRLFALLIEDHVSRKNYKPAYRALTELQKK 1359 (1416)
T ss_pred hHHHHHHHHHHHhhCcCCCCcchhHHHHHHHHHHHHhhhhccHHHHHHHHHhhc
Confidence 4455555555555432 2233567889999999999999999999999765
No 98
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.51 E-value=5.7e-06 Score=81.90 Aligned_cols=222 Identities=14% Similarity=0.135 Sum_probs=141.4
Q ss_pred HHHHHHHHHhCCChhHHHHHHHHHHHCCCCcCHHhHHHHHHHhcccCcHHHHHHHHHHHHHhCCC-CchhHHHHHHHHHH
Q 004487 344 WTAMISAYVQKGNLEEALNLFIEMCRANISADQATFASILRASAELASLSLGKQLHSFVIRSGFM-SNVFSGSALLDMYA 422 (749)
Q Consensus 344 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~li~~y~ 422 (749)
..-+.++|...|+++.++. +.... -.|....+..+...+....+-+.+..-+......... .+..+......+|.
T Consensus 38 ~~~~~Rs~iAlg~~~~vl~---ei~~~-~~~~l~av~~la~y~~~~~~~e~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~ 113 (290)
T PF04733_consen 38 DFYQYRSYIALGQYDSVLS---EIKKS-SSPELQAVRLLAEYLSSPSDKESALEELKELLADQAGESNEIVQLLAATILF 113 (290)
T ss_dssp HHHHHHHHHHTT-HHHHHH---HS-TT-SSCCCHHHHHHHHHHCTSTTHHCHHHHHHHCCCTS---CHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHcCChhHHHH---HhccC-CChhHHHHHHHHHHHhCccchHHHHHHHHHHHHhccccccHHHHHHHHHHHH
Confidence 3445567777777665443 22222 2555555544444444433333333322222222222 23344444456677
Q ss_pred hcCCHHHHHHHHhhCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc----cCCHHHHHH
Q 004487 423 KSGSLKDAIQTFKEMPERNIVSWNALISACAQNGDAQATLKSFEDMVQSGYQPDSVSLLSVLSACSH----CGLIEEGLQ 498 (749)
Q Consensus 423 ~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~----~g~~~~a~~ 498 (749)
..|++++|.+++... .+.......+..|.+.++++.|.+.++.|.+ +..|. +...+..++.. ...+.+|..
T Consensus 114 ~~~~~~~AL~~l~~~--~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~--~~eD~-~l~qLa~awv~l~~g~e~~~~A~y 188 (290)
T PF04733_consen 114 HEGDYEEALKLLHKG--GSLELLALAVQILLKMNRPDLAEKELKNMQQ--IDEDS-ILTQLAEAWVNLATGGEKYQDAFY 188 (290)
T ss_dssp CCCHHHHHHCCCTTT--TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHC--CSCCH-HHHHHHHHHHHHHHTTTCCCHHHH
T ss_pred HcCCHHHHHHHHHcc--CcccHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCcH-HHHHHHHHHHHHHhCchhHHHHHH
Confidence 889999999888876 4556666678889999999999999999987 44454 34444444332 346899999
Q ss_pred HHHHhHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHhHHHHHHHHHhcCCH-HHHHHHHHHHhcCC
Q 004487 499 YFNSMTQKYKLRPKKEHYASMVDILCRSGCFDEAEKLMAQM-PFEP-DEIMWSSVINSCRIHKNL-EFAKKAADQLFKME 575 (749)
Q Consensus 499 ~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~-~~a~~~~~~~~~~~ 575 (749)
+|+++..+ ..+++.+.+.+.-+....|++++|.+++++. ...| |+.++..++..+...|+. +.+.+.++++....
T Consensus 189 ~f~El~~~--~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~~ 266 (290)
T PF04733_consen 189 IFEELSDK--FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQSN 266 (290)
T ss_dssp HHHHHHCC--S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHHT
T ss_pred HHHHHHhc--cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHHhC
Confidence 99998764 4578888888999999999999999998886 4445 466777777777777876 67788888888888
Q ss_pred C
Q 004487 576 K 576 (749)
Q Consensus 576 ~ 576 (749)
|
T Consensus 267 p 267 (290)
T PF04733_consen 267 P 267 (290)
T ss_dssp T
T ss_pred C
Confidence 7
No 99
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.50 E-value=9.7e-05 Score=69.32 Aligned_cols=388 Identities=12% Similarity=0.059 Sum_probs=193.7
Q ss_pred hhHHHHHHHHhCCCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHcCCChHHHHHHHccCCC--CCcchHHHH-HHHHH
Q 004487 175 FTFAAALSAGVGLADIALGRQVHAFVVKTNFVENVFVANALLDLYSKHDCVVEARKLFGEMPE--VDGVSYNVM-ITCYA 251 (749)
Q Consensus 175 ~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~--~~~~~~~~l-i~~~~ 251 (749)
--+.+++..+.+..++..+.+++....+.. +.+....+.|...|-...++..|-..++.+.. |...-|... ...+.
T Consensus 11 Geftaviy~lI~d~ry~DaI~~l~s~~Er~-p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY 89 (459)
T KOG4340|consen 11 GEFTAVVYRLIRDARYADAIQLLGSELERS-PRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLY 89 (459)
T ss_pred CchHHHHHHHHHHhhHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHH
Confidence 334555555555555555555555444332 11333444555555555556655555555433 222222211 23444
Q ss_pred hcCChhHHHHHHHHHHHCCCCCCcchHHHHHHHHHccCChHHHHHHHHHHHHhcCCcchhHHHHHHHHHHhcCCHHHHHH
Q 004487 252 WNEQYKESLKLFRELQFTRFDRSQFPFSTLLSVVANKLDLQIGRQIHTQTIVTTAISEVKVANSLVDMYAKCGRFEEAKE 331 (749)
Q Consensus 252 ~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~ 331 (749)
+.+.+.+|+++...|... |+...-..-+.+. ..-..+++..++.
T Consensus 90 ~A~i~ADALrV~~~~~D~---~~L~~~~lqLqaA---------------------------------IkYse~Dl~g~rs 133 (459)
T KOG4340|consen 90 KACIYADALRVAFLLLDN---PALHSRVLQLQAA---------------------------------IKYSEGDLPGSRS 133 (459)
T ss_pred HhcccHHHHHHHHHhcCC---HHHHHHHHHHHHH---------------------------------HhcccccCcchHH
Confidence 555555666655555321 1111000001100 1123455555555
Q ss_pred HHHhcCC-CCcccHHHHHHHHHhCCChhHHHHHHHHHHHCCCCcCHHhHHHHHHHhcccCcHHHHHHHHHHHHHhCCCCc
Q 004487 332 IFANLSH-ISTVPWTAMISAYVQKGNLEEALNLFIEMCRANISADQATFASILRASAELASLSLGKQLHSFVIRSGFMSN 410 (749)
Q Consensus 332 ~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~ 410 (749)
+.++.+. .+..+.+.......+.|++++|++-|+...+-+---....|+..+.- .+.++.+.|....+.++++|+...
T Consensus 134 LveQlp~en~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyqpllAYniALaH-y~~~qyasALk~iSEIieRG~r~H 212 (459)
T KOG4340|consen 134 LVEQLPSENEADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQPLLAYNLALAH-YSSRQYASALKHISEIIERGIRQH 212 (459)
T ss_pred HHHhccCCCccchhccchheeeccccHHHHHHHHHHHHhhcCCCchhHHHHHHHH-HhhhhHHHHHHHHHHHHHhhhhcC
Confidence 5555552 33333333333344566666666666655543222223444443332 334555666666555555543311
Q ss_pred ----------------------------hhHHHHHHHHHHhcCCHHHHHHHHhhCCC-----CCcchHHHHHHHHHhcCC
Q 004487 411 ----------------------------VFSGSALLDMYAKSGSLKDAIQTFKEMPE-----RNIVSWNALISACAQNGD 457 (749)
Q Consensus 411 ----------------------------~~~~~~li~~y~~~g~~~~A~~~~~~~~~-----~~~~~~~~li~~~~~~g~ 457 (749)
+..+|.-...+.+.|+.+.|.+.+..|+. .|++|...+.-. -..++
T Consensus 213 PElgIGm~tegiDvrsvgNt~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~-n~~~~ 291 (459)
T KOG4340|consen 213 PELGIGMTTEGIDVRSVGNTLVLHQSALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALM-NMDAR 291 (459)
T ss_pred CccCccceeccCchhcccchHHHHHHHHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHh-cccCC
Confidence 12233333456788999999999999983 467776655322 22345
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCC-CCChHHHHHHHHHHHHc-CCHHHHHHH
Q 004487 458 AQATLKSFEDMVQSGYQPDSVSLLSVLSACSHCGLIEEGLQYFNSMTQKYKL-RPKKEHYASMVDILCRS-GCFDEAEKL 535 (749)
Q Consensus 458 ~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~-~p~~~~~~~li~~~~~~-g~~~~A~~~ 535 (749)
+.+..+-+.-+.... +-...||..++-.|++..-++-|-.++.+=... .. -.+...|+ |++++..+ -..++|++-
T Consensus 292 p~~g~~KLqFLL~~n-PfP~ETFANlLllyCKNeyf~lAADvLAEn~~l-Tyk~L~~Yly~-LLdaLIt~qT~pEea~KK 368 (459)
T KOG4340|consen 292 PTEGFEKLQFLLQQN-PFPPETFANLLLLYCKNEYFDLAADVLAENAHL-TYKFLTPYLYD-LLDALITCQTAPEEAFKK 368 (459)
T ss_pred ccccHHHHHHHHhcC-CCChHHHHHHHHHHhhhHHHhHHHHHHhhCcch-hHHHhhHHHHH-HHHHHHhCCCCHHHHHHH
Confidence 555555555555532 234569999999999999999888877431100 00 01222333 34444433 356666666
Q ss_pred HHhCCCCCCHHhHHHHHHH--HHhcCC---HHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHcCCchhHHHHHHHHHh
Q 004487 536 MAQMPFEPDEIMWSSVINS--CRIHKN---LEFAKKAADQLFKMEKLRDAAPYVAMSNIYAVAGQWESVSQVKKAMRE 608 (749)
Q Consensus 536 ~~~~~~~p~~~~~~~ll~~--~~~~g~---~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 608 (749)
++.....-....-...+.. -+..++ +..+++-+++.+++.. .....-+++|++..++..+.+.+..-.+
T Consensus 369 L~~La~~l~~kLRklAi~vQe~r~~~dd~a~R~ai~~Yd~~LE~YL----PVlMa~AkiyW~~~Dy~~vEk~Fr~Sve 442 (459)
T KOG4340|consen 369 LDGLAGMLTEKLRKLAIQVQEARHNRDDEAIRKAVNEYDETLEKYL----PVLMAQAKIYWNLEDYPMVEKIFRKSVE 442 (459)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHH----HHHHHHHHhhccccccHHHHHHHHHHHh
Confidence 5554100000001111111 111221 2334444555555432 2455677889999999999999887654
No 100
>PF12854 PPR_1: PPR repeat
Probab=98.49 E-value=1.5e-07 Score=58.83 Aligned_cols=33 Identities=36% Similarity=0.640 Sum_probs=25.4
Q ss_pred CCCCchhHHHHHHHHhHcCCChhHHHHHHccCC
Q 004487 103 GYNSILIICNSLVDSYCKIRCLDLARRVFKEMP 135 (749)
Q Consensus 103 g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 135 (749)
|+.||..+||+||++|++.|++++|.++|++|+
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 667777777777777777777777777777774
No 101
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.45 E-value=1.4e-05 Score=89.49 Aligned_cols=201 Identities=12% Similarity=0.103 Sum_probs=168.5
Q ss_pred CCchhHHHHHHHHHHhcCCHHHHHHHHhhCCC--------CCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH
Q 004487 408 MSNVFSGSALLDMYAKSGSLKDAIQTFKEMPE--------RNIVSWNALISACAQNGDAQATLKSFEDMVQSGYQPDSVS 479 (749)
Q Consensus 408 ~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t 479 (749)
+.+...|-..+......+++++|++++++... .-...|.++++.-...|.-+...++|+++.+. --....
T Consensus 1455 PNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqy--cd~~~V 1532 (1710)
T KOG1070|consen 1455 PNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQY--CDAYTV 1532 (1710)
T ss_pred CCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHh--cchHHH
Confidence 33455666777778889999999999998763 23458999999988999889999999999883 333457
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC---HHhHHHHHHHH
Q 004487 480 LLSVLSACSHCGLIEEGLQYFNSMTQKYKLRPKKEHYASMVDILCRSGCFDEAEKLMAQM-PFEPD---EIMWSSVINSC 555 (749)
Q Consensus 480 ~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~---~~~~~~ll~~~ 555 (749)
|..|+..|...+..++|-++++.|.++++ .....|..+++.+.+..+-++|..++.++ ..-|. .....-.+..-
T Consensus 1533 ~~~L~~iy~k~ek~~~A~ell~~m~KKF~--q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLE 1610 (1710)
T KOG1070|consen 1533 HLKLLGIYEKSEKNDEADELLRLMLKKFG--QTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLE 1610 (1710)
T ss_pred HHHHHHHHHHhhcchhHHHHHHHHHHHhc--chhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHH
Confidence 88999999999999999999999999876 66778999999999999999999999887 33343 44444455556
Q ss_pred HhcCCHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHcCCchhHHHHHHHHHhCCCcc
Q 004487 556 RIHKNLEFAKKAADQLFKMEKLRDAAPYVAMSNIYAVAGQWESVSQVKKAMRERGVRK 613 (749)
Q Consensus 556 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~ 613 (749)
.++||.+.|..+|+.++.-.| .....|..+++.-.+.|..+.+..++++....++.+
T Consensus 1611 Fk~GDaeRGRtlfEgll~ayP-KRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~ 1667 (1710)
T KOG1070|consen 1611 FKYGDAERGRTLFEGLLSAYP-KRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSI 1667 (1710)
T ss_pred hhcCCchhhHHHHHHHHhhCc-cchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCh
Confidence 789999999999999999999 889999999999999999999999999998887643
No 102
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.45 E-value=1.9e-05 Score=76.93 Aligned_cols=180 Identities=10% Similarity=0.031 Sum_probs=112.7
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHhhCCC--CC-c---chHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH----H
Q 004487 410 NVFSGSALLDMYAKSGSLKDAIQTFKEMPE--RN-I---VSWNALISACAQNGDAQATLKSFEDMVQSGYQPDSV----S 479 (749)
Q Consensus 410 ~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~~-~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~----t 479 (749)
....+..+...|.+.|++++|...|+++.+ |+ . ..|..+..++.+.|++++|+..++++.+. .|+.. +
T Consensus 32 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~a 109 (235)
T TIGR03302 32 PAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRL--HPNHPDADYA 109 (235)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--CcCCCchHHH
Confidence 344555666677777777777777776652 22 1 34556667777777777777777777763 33322 3
Q ss_pred HHHHHHHHhcc--------CCHHHHHHHHHHhHHhcCCCCChH-HHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHHhHHH
Q 004487 480 LLSVLSACSHC--------GLIEEGLQYFNSMTQKYKLRPKKE-HYASMVDILCRSGCFDEAEKLMAQMPFEPDEIMWSS 550 (749)
Q Consensus 480 ~~~ll~a~~~~--------g~~~~a~~~~~~m~~~~~~~p~~~-~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ 550 (749)
+..+..++... |+.++|.+.|+.+... .|+.. .+..+... +...... ......
T Consensus 110 ~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~---~p~~~~~~~a~~~~----~~~~~~~-----------~~~~~~ 171 (235)
T TIGR03302 110 YYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR---YPNSEYAPDAKKRM----DYLRNRL-----------AGKELY 171 (235)
T ss_pred HHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH---CCCChhHHHHHHHH----HHHHHHH-----------HHHHHH
Confidence 44444444443 5677777777776643 34322 11111111 0000000 001123
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhcCCCC--CCchhHHHHHHHHHHcCCchhHHHHHHHHHhC
Q 004487 551 VINSCRIHKNLEFAKKAADQLFKMEKL--RDAAPYVAMSNIYAVAGQWESVSQVKKAMRER 609 (749)
Q Consensus 551 ll~~~~~~g~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 609 (749)
+...+...|+.++|...++++++..|. .....+..++.+|...|++++|...++.+..+
T Consensus 172 ~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 172 VARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 455678889999999999999998761 23478899999999999999999999888654
No 103
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.40 E-value=0.0038 Score=64.01 Aligned_cols=173 Identities=12% Similarity=0.091 Sum_probs=106.4
Q ss_pred hhHHHHHHHHHHHCCCCcCHHhHHHHHHHhcccCcHHHHHHHHHHHHHhCCCC-chhHHHHHHHHHHhcCCHHHHHHHHh
Q 004487 357 LEEALNLFIEMCRANISADQATFASILRASAELASLSLGKQLHSFVIRSGFMS-NVFSGSALLDMYAKSGSLKDAIQTFK 435 (749)
Q Consensus 357 ~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~li~~y~~~g~~~~A~~~~~ 435 (749)
.+.....+.+....-..--..+|...++...+..-++.|+.+|..+.+.+..+ ++.++++++..|+ .++.+-|.++|+
T Consensus 347 ~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~c-skD~~~AfrIFe 425 (656)
T KOG1914|consen 347 EKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYC-SKDKETAFRIFE 425 (656)
T ss_pred hhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHh-cCChhHHHHHHH
Confidence 34444455554443222223456666666677777777777777777766655 7777777777666 366677777777
Q ss_pred hCCC--CCc-chHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHhccCCHHHHHHHHHHhHHhcC--
Q 004487 436 EMPE--RNI-VSWNALISACAQNGDAQATLKSFEDMVQSGYQPDS--VSLLSVLSACSHCGLIEEGLQYFNSMTQKYK-- 508 (749)
Q Consensus 436 ~~~~--~~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~-- 508 (749)
--.+ +|. .--+..+.-+...++-..|..+|++.+..++.||. ..|..+|.-=+..|++..+.++-+++...+.
T Consensus 426 LGLkkf~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~af~~~ 505 (656)
T KOG1914|consen 426 LGLKKFGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTAFPAD 505 (656)
T ss_pred HHHHhcCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHhcchh
Confidence 4432 333 33344555566667777777777777777666665 3677777777777777777777766665443
Q ss_pred CCCChHHHHHHHHHHHHcCCHH
Q 004487 509 LRPKKEHYASMVDILCRSGCFD 530 (749)
Q Consensus 509 ~~p~~~~~~~li~~~~~~g~~~ 530 (749)
..|...+-..+++.|.-.+...
T Consensus 506 qe~~~~~~~~~v~RY~~~d~~~ 527 (656)
T KOG1914|consen 506 QEYEGNETALFVDRYGILDLYP 527 (656)
T ss_pred hcCCCChHHHHHHHHhhccccc
Confidence 3433344445566665555443
No 104
>PF12854 PPR_1: PPR repeat
Probab=98.39 E-value=4.9e-07 Score=56.48 Aligned_cols=33 Identities=33% Similarity=0.601 Sum_probs=25.1
Q ss_pred CCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCC
Q 004487 406 GFMSNVFSGSALLDMYAKSGSLKDAIQTFKEMP 438 (749)
Q Consensus 406 ~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~ 438 (749)
|+.||..+||+||++|++.|++++|.++|++|+
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 567777777777777777777777777777774
No 105
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.39 E-value=0.00038 Score=75.98 Aligned_cols=378 Identities=12% Similarity=0.080 Sum_probs=208.4
Q ss_pred hhHHHHHHHHHHcCCChHHHHHHHccCCC---CCcchHHHHHHHHHhcCChhHHHHHHHHHHHCC-CCCCcchHHHHHHH
Q 004487 209 VFVANALLDLYSKHDCVVEARKLFGEMPE---VDGVSYNVMITCYAWNEQYKESLKLFRELQFTR-FDRSQFPFSTLLSV 284 (749)
Q Consensus 209 ~~~~~~Li~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-~~p~~~t~~~ll~~ 284 (749)
...|..|...|....++..|.+.|+..-+ .|..+|......|+....+++|..+.-.--+.. ...-...|...--.
T Consensus 492 apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~~~qka~a~~~k~nW~~rG~y 571 (1238)
T KOG1127|consen 492 APAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLRAAQKAPAFACKENWVQRGPY 571 (1238)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHHHhhhchHHHHHhhhhhcccc
Confidence 34678888888887788899999988765 456688889999999999999998832221110 00001112222223
Q ss_pred HHccCChHHHHHHHHHHHHhcCCcchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCCcccHHH-H--HHHHHhCCChhHHH
Q 004487 285 VANKLDLQIGRQIHTQTIVTTAISEVKVANSLVDMYAKCGRFEEAKEIFANLSHISTVPWTA-M--ISAYVQKGNLEEAL 361 (749)
Q Consensus 285 ~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-l--i~~~~~~g~~~~A~ 361 (749)
+...++...+..-++...+.. +-|...|..|..+|..+|+...|.++|.+....++.+|-. . ...-+.+|.+.+|+
T Consensus 572 yLea~n~h~aV~~fQsALR~d-PkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~y~~fk~A~~ecd~GkYkeal 650 (1238)
T KOG1127|consen 572 YLEAHNLHGAVCEFQSALRTD-PKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSKYGRFKEAVMECDNGKYKEAL 650 (1238)
T ss_pred ccCccchhhHHHHHHHHhcCC-chhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhHHHHHHHHHHHHHhhhHHHHH
Confidence 345566666666666555443 4477888999999999999999999998887666655322 1 22345688899998
Q ss_pred HHHHHHHHC------CCCcCHHhHHHHHHHhcccCcH-------HHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHH
Q 004487 362 NLFIEMCRA------NISADQATFASILRASAELASL-------SLGKQLHSFVIRSGFMSNVFSGSALLDMYAKSGSLK 428 (749)
Q Consensus 362 ~l~~~m~~~------g~~p~~~t~~~ll~~~~~~~~~-------~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~ 428 (749)
..+...... +..--..++......+...|-. +...+.+..........+...+-.+ .
T Consensus 651 d~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h~~~~~~~~Wi~a----------s 720 (1238)
T KOG1127|consen 651 DALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIHSLQSDRLQWIVA----------S 720 (1238)
T ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhhhHHHHHHH----------h
Confidence 888776542 1111112222222222222222 2222222222222212222222211 1
Q ss_pred HHHHHHhhCCCCCcc--hHHHHHHH-HHhcCCH---H---HHHHHHHHHHHCCCCCCHHHHHHHHHHHhc----c---C-
Q 004487 429 DAIQTFKEMPERNIV--SWNALISA-CAQNGDA---Q---ATLKSFEDMVQSGYQPDSVSLLSVLSACSH----C---G- 491 (749)
Q Consensus 429 ~A~~~~~~~~~~~~~--~~~~li~~-~~~~g~~---~---~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~----~---g- 491 (749)
+|..+|-... |+.+ .+..++.. .-..+.. + -+.+.+-.-+. ...+..+|..+...|.+ . +
T Consensus 721 dac~~f~q~e-~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hls--l~~~~~~WyNLGinylr~f~~l~et~~ 797 (1238)
T KOG1127|consen 721 DACYIFSQEE-PSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLS--LAIHMYPWYNLGINYLRYFLLLGETMK 797 (1238)
T ss_pred HHHHHHHHhc-ccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHH--HhhccchHHHHhHHHHHHHHHcCCcch
Confidence 2333333332 3311 11111111 1111111 1 11111111111 11223334333333222 1 1
Q ss_pred CHHHHHHHHHHhHHhcCCCCCh-HHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHhHHHHHHHHHhcCCHHHHHHHH
Q 004487 492 LIEEGLQYFNSMTQKYKLRPKK-EHYASMVDILCRSGCFDEAEKLMAQM-PFEP-DEIMWSSVINSCRIHKNLEFAKKAA 568 (749)
Q Consensus 492 ~~~~a~~~~~~m~~~~~~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~ 568 (749)
+...|+..+....+ +..+. ..|+.| ..+.-.|.+.-|.--|-+. -..| ...+|..+...|....|++.|..+|
T Consensus 798 ~~~~Ai~c~KkaV~---L~ann~~~WnaL-GVlsg~gnva~aQHCfIks~~sep~~~~~W~NlgvL~l~n~d~E~A~~af 873 (1238)
T KOG1127|consen 798 DACTAIRCCKKAVS---LCANNEGLWNAL-GVLSGIGNVACAQHCFIKSRFSEPTCHCQWLNLGVLVLENQDFEHAEPAF 873 (1238)
T ss_pred hHHHHHHHHHHHHH---HhhccHHHHHHH-HHhhccchhhhhhhhhhhhhhccccchhheeccceeEEecccHHHhhHHH
Confidence 22355666655543 23333 344444 3445556777666655443 3334 5788888888888999999999999
Q ss_pred HHHhcCCCCCCchhHHHHHHHHHHcCCchhHHHHHHH
Q 004487 569 DQLFKMEKLRDAAPYVAMSNIYAVAGQWESVSQVKKA 605 (749)
Q Consensus 569 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 605 (749)
.+...++| .|...+.-.+-+-...|+.-++..++..
T Consensus 874 ~~~qSLdP-~nl~~WlG~Ali~eavG~ii~~~~lfaH 909 (1238)
T KOG1127|consen 874 SSVQSLDP-LNLVQWLGEALIPEAVGRIIERLILFAH 909 (1238)
T ss_pred HhhhhcCc-hhhHHHHHHHHhHHHHHHHHHHHHHHHh
Confidence 99999999 8888888888888888887777777665
No 106
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.35 E-value=1.2e-05 Score=70.93 Aligned_cols=121 Identities=11% Similarity=0.056 Sum_probs=89.5
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCC-ChHHHHHHHHHHHHcCCHHHHHHHHHhC-C
Q 004487 463 KSFEDMVQSGYQPDSVSLLSVLSACSHCGLIEEGLQYFNSMTQKYKLRP-KKEHYASMVDILCRSGCFDEAEKLMAQM-P 540 (749)
Q Consensus 463 ~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~-~ 540 (749)
.+|++..+ +.|+. +..+..++...|++++|...|+.... +.| +...|..+..++.+.|++++|...|++. .
T Consensus 14 ~~~~~al~--~~p~~--~~~~g~~~~~~g~~~~A~~~~~~al~---~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~ 86 (144)
T PRK15359 14 DILKQLLS--VDPET--VYASGYASWQEGDYSRAVIDFSWLVM---AQPWSWRAHIALAGTWMMLKEYTTAINFYGHALM 86 (144)
T ss_pred HHHHHHHH--cCHHH--HHHHHHHHHHcCCHHHHHHHHHHHHH---cCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 45555555 45554 44456677788888888888887763 344 5667777888888888888888888887 4
Q ss_pred CCC-CHHhHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCchhHHHHHHHHH
Q 004487 541 FEP-DEIMWSSVINSCRIHKNLEFAKKAADQLFKMEKLRDAAPYVAMSNIYA 591 (749)
Q Consensus 541 ~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 591 (749)
..| +...|..+..++...|+.++|+..++++++..| .++..+...+++..
T Consensus 87 l~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p-~~~~~~~~~~~~~~ 137 (144)
T PRK15359 87 LDASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSY-ADASWSEIRQNAQI 137 (144)
T ss_pred cCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHH
Confidence 445 567777888888888888888888888888888 88888877766553
No 107
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.34 E-value=2.8e-05 Score=72.57 Aligned_cols=118 Identities=8% Similarity=0.098 Sum_probs=87.7
Q ss_pred cCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHhHHHHHHH-HHhcCC--HHHH
Q 004487 490 CGLIEEGLQYFNSMTQKYKLRPKKEHYASMVDILCRSGCFDEAEKLMAQM-PFEP-DEIMWSSVINS-CRIHKN--LEFA 564 (749)
Q Consensus 490 ~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~-~~~~g~--~~~a 564 (749)
.++.+++...++...+. -+.+...|..+...|...|++++|...+++. ...| +..++..+..+ +...|+ .++|
T Consensus 52 ~~~~~~~i~~l~~~L~~--~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A 129 (198)
T PRK10370 52 QQTPEAQLQALQDKIRA--NPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQT 129 (198)
T ss_pred chhHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHH
Confidence 55566666666665542 2345677777788888888888888888777 5555 46667666665 356666 4888
Q ss_pred HHHHHHHhcCCCCCCchhHHHHHHHHHHcCCchhHHHHHHHHHhCC
Q 004487 565 KKAADQLFKMEKLRDAAPYVAMSNIYAVAGQWESVSQVKKAMRERG 610 (749)
Q Consensus 565 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 610 (749)
..+++++++.+| .+..++..++..+...|++++|...++++.+..
T Consensus 130 ~~~l~~al~~dP-~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~ 174 (198)
T PRK10370 130 REMIDKALALDA-NEVTALMLLASDAFMQADYAQAIELWQKVLDLN 174 (198)
T ss_pred HHHHHHHHHhCC-CChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 888888888888 888888888888888888888888888887653
No 108
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.34 E-value=0.00055 Score=70.04 Aligned_cols=213 Identities=14% Similarity=0.155 Sum_probs=128.9
Q ss_pred HHHHhcccCcHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCcc---hHHH-------HHHH
Q 004487 382 ILRASAELASLSLGKQLHSFVIRSGFMSNVFSGSALLDMYAKSGSLKDAIQTFKEMPERNIV---SWNA-------LISA 451 (749)
Q Consensus 382 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~---~~~~-------li~~ 451 (749)
+.++..+..+++.+.+-+....... .++.-++....+|...|.+......-+...+..-. -|+. +..+
T Consensus 230 lgnaaykkk~f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r~g~a 307 (539)
T KOG0548|consen 230 LGNAAYKKKDFETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALARLGNA 307 (539)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHHhhhh
Confidence 4444444555556666555555544 45555566666676666666555544443321111 1121 2334
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHH-HHHHHHHHHHcCCHH
Q 004487 452 CAQNGDAQATLKSFEDMVQSGYQPDSVSLLSVLSACSHCGLIEEGLQYFNSMTQKYKLRPKKEH-YASMVDILCRSGCFD 530 (749)
Q Consensus 452 ~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~-~~~li~~~~~~g~~~ 530 (749)
|.+.++++.|+..|.+.......||..+ +....+++....+... -+.|.... ...=...+.+.|++.
T Consensus 308 ~~k~~~~~~ai~~~~kaLte~Rt~~~ls---------~lk~~Ek~~k~~e~~a---~~~pe~A~e~r~kGne~Fk~gdy~ 375 (539)
T KOG0548|consen 308 YTKREDYEGAIKYYQKALTEHRTPDLLS---------KLKEAEKALKEAERKA---YINPEKAEEEREKGNEAFKKGDYP 375 (539)
T ss_pred hhhHHhHHHHHHHHHHHhhhhcCHHHHH---------HHHHHHHHHHHHHHHH---hhChhHHHHHHHHHHHHHhccCHH
Confidence 5556677777777777665444443221 1222333333332221 23343211 111145566788888
Q ss_pred HHHHHHHhC-CCCC-CHHhHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHcCCchhHHHHHHHHHh
Q 004487 531 EAEKLMAQM-PFEP-DEIMWSSVINSCRIHKNLEFAKKAADQLFKMEKLRDAAPYVAMSNIYAVAGQWESVSQVKKAMRE 608 (749)
Q Consensus 531 ~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 608 (749)
+|.+.+.++ ...| |...|.....+|.+.|++..|+.-.+..++++| +....|..=+.++....+|++|.+.+.+..+
T Consensus 376 ~Av~~YteAIkr~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p-~~~kgy~RKg~al~~mk~ydkAleay~eale 454 (539)
T KOG0548|consen 376 EAVKHYTEAIKRDPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDP-NFIKAYLRKGAALRAMKEYDKALEAYQEALE 454 (539)
T ss_pred HHHHHHHHHHhcCCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCc-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 888888887 4445 577888888888888888888888888888888 8888888888888888888888888887655
Q ss_pred C
Q 004487 609 R 609 (749)
Q Consensus 609 ~ 609 (749)
.
T Consensus 455 ~ 455 (539)
T KOG0548|consen 455 L 455 (539)
T ss_pred c
Confidence 4
No 109
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.34 E-value=0.0014 Score=68.53 Aligned_cols=54 Identities=7% Similarity=-0.024 Sum_probs=26.1
Q ss_pred HHHHHhCCChhHHHHHHHHHHHCCCCcC-HHhHHHHHHHhcccCcHHHHHHHHHHHH
Q 004487 348 ISAYVQKGNLEEALNLFIEMCRANISAD-QATFASILRASAELASLSLGKQLHSFVI 403 (749)
Q Consensus 348 i~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~~~~~~~~~~~a~~~~~~~~ 403 (749)
...+...|++++|...+++..+. .|+ ...+..+-..+...|+++++...+....
T Consensus 121 a~~~~~~G~~~~A~~~~~~al~~--~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l 175 (355)
T cd05804 121 AFGLEEAGQYDRAEEAARRALEL--NPDDAWAVHAVAHVLEMQGRFKEGIAFMESWR 175 (355)
T ss_pred HHHHHHcCCHHHHHHHHHHHHhh--CCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhh
Confidence 34556666666666666666553 232 2233333334444444444444444333
No 110
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.32 E-value=0.00015 Score=68.03 Aligned_cols=83 Identities=11% Similarity=0.139 Sum_probs=65.0
Q ss_pred HHHHHcCCHHHHHHHHHhCC----CCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHcCCc
Q 004487 521 DILCRSGCFDEAEKLMAQMP----FEPDEIMWSSVINSCRIHKNLEFAKKAADQLFKMEKLRDAAPYVAMSNIYAVAGQW 596 (749)
Q Consensus 521 ~~~~~~g~~~~A~~~~~~~~----~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 596 (749)
..+.+.|+++.|.+.+..|| .+.|++|...+.-. -..++...+.+-++-++++.| -...++..+.-+|++..-+
T Consensus 249 AIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~-n~~~~p~~g~~KLqFLL~~nP-fP~ETFANlLllyCKNeyf 326 (459)
T KOG4340|consen 249 AIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALM-NMDARPTEGFEKLQFLLQQNP-FPPETFANLLLLYCKNEYF 326 (459)
T ss_pred hhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHh-cccCCccccHHHHHHHHhcCC-CChHHHHHHHHHHhhhHHH
Confidence 34668899999999999994 23467777654322 345667777888888999999 8889999999999999999
Q ss_pred hhHHHHHHH
Q 004487 597 ESVSQVKKA 605 (749)
Q Consensus 597 ~~a~~~~~~ 605 (749)
+-|..++-+
T Consensus 327 ~lAADvLAE 335 (459)
T KOG4340|consen 327 DLAADVLAE 335 (459)
T ss_pred hHHHHHHhh
Confidence 999888754
No 111
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.30 E-value=0.0025 Score=65.44 Aligned_cols=429 Identities=13% Similarity=0.053 Sum_probs=234.8
Q ss_pred HHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHhCCCChHHHHHHHHHHHHcCCCCC-hhHHHHHHHHHHcCCCh
Q 004487 147 TGFAKEGLNEEAIKLFVEMQHLGFKPSDFTFAAALSAGVGLADIALGRQVHAFVVKTNFVEN-VFVANALLDLYSKHDCV 225 (749)
Q Consensus 147 ~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~-~~~~~~Li~~y~~~g~~ 225 (749)
.+....|+++.|+.+|.+..... ++|...|+.=..+++..++++.|.+=-...++. .|+ .--|+.+..+..-.|++
T Consensus 10 naa~s~~d~~~ai~~~t~ai~l~-p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l--~p~w~kgy~r~Gaa~~~lg~~ 86 (539)
T KOG0548|consen 10 NAAFSSGDFETAIRLFTEAIMLS-PTNHVLYSNRSAAYASLGSYEKALKDATKTRRL--NPDWAKGYSRKGAALFGLGDY 86 (539)
T ss_pred HhhcccccHHHHHHHHHHHHccC-CCccchhcchHHHHHHHhhHHHHHHHHHHHHhc--CCchhhHHHHhHHHHHhcccH
Confidence 34567899999999998877653 347777888888888888888776555554443 333 23466667777777888
Q ss_pred HHHHHHHccCCCC---CcchHHHHHHHHHhcCChhHH-HHHHHHH-HHCCCCCCcchHHHHHHHHHccCChHHHHHHHHH
Q 004487 226 VEARKLFGEMPEV---DGVSYNVMITCYAWNEQYKES-LKLFREL-QFTRFDRSQFPFSTLLSVVANKLDLQIGRQIHTQ 300 (749)
Q Consensus 226 ~~A~~~f~~~~~~---~~~~~~~li~~~~~~g~~~~A-~~~~~~m-~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~ 300 (749)
++|...|.+-.+. |...++-+..++ ..+.+ .+.|..- .-.++.-++.|-..+-+. .+ ..+...
T Consensus 87 ~eA~~ay~~GL~~d~~n~~L~~gl~~a~----~~~~~~~~~~~~p~~~~~l~~~p~t~~~~~~~-----~~---~~~l~~ 154 (539)
T KOG0548|consen 87 EEAILAYSEGLEKDPSNKQLKTGLAQAY----LEDYAADQLFTKPYFHEKLANLPLTNYSLSDP-----AY---VKILEI 154 (539)
T ss_pred HHHHHHHHHHhhcCCchHHHHHhHHHhh----hHHHHhhhhccCcHHHHHhhcChhhhhhhccH-----HH---HHHHHH
Confidence 8888888776653 333455555544 11111 1111100 000111111111111110 00 011111
Q ss_pred HHHh------cCCcchhHHHHHHHHHHhcCCHHHHHHHH--HhcCCC-----Cc-----------------ccHHHHHHH
Q 004487 301 TIVT------TAISEVKVANSLVDMYAKCGRFEEAKEIF--ANLSHI-----ST-----------------VPWTAMISA 350 (749)
Q Consensus 301 ~~~~------g~~~~~~~~~~li~~~~~~g~~~~A~~~~--~~~~~~-----~~-----------------~~~~~li~~ 350 (749)
+.+. -+. |..+-.++.......-....+.... ..+..| +. ...-.+..+
T Consensus 155 ~~~~p~~l~~~l~-d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgna 233 (539)
T KOG0548|consen 155 IQKNPTSLKLYLN-DPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNA 233 (539)
T ss_pred hhcCcHhhhcccc-cHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHH
Confidence 1110 000 1111111111000000000000000 000000 00 003445566
Q ss_pred HHhCCChhHHHHHHHHHHHCCCCcCHHhHHHHHHHhcccCcHHHHHHHHHHHHHhCCCCc------hhHHHHHHHHHHhc
Q 004487 351 YVQKGNLEEALNLFIEMCRANISADQATFASILRASAELASLSLGKQLHSFVIRSGFMSN------VFSGSALLDMYAKS 424 (749)
Q Consensus 351 ~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~------~~~~~~li~~y~~~ 424 (749)
..+..+++.|++-+....... -+..-++..-.++...|........-...++.|...- ......+..+|.+.
T Consensus 234 aykkk~f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r~g~a~~k~ 311 (539)
T KOG0548|consen 234 AYKKKDFETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALARLGNAYTKR 311 (539)
T ss_pred HHHhhhHHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHHhhhhhhhH
Confidence 666777888888887776643 2333334444556667766666555544444442210 11112244578888
Q ss_pred CCHHHHHHHHhhCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHhccCCHHHHHHHHHHh
Q 004487 425 GSLKDAIQTFKEMPERNIVSWNALISACAQNGDAQATLKSFEDMVQSGYQPDSV-SLLSVLSACSHCGLIEEGLQYFNSM 503 (749)
Q Consensus 425 g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~m 503 (749)
++++.|...|++...+... -....+....++++...+...- +.|+.. -...-.+.+.+.|++..|...+.++
T Consensus 312 ~~~~~ai~~~~kaLte~Rt-----~~~ls~lk~~Ek~~k~~e~~a~--~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteA 384 (539)
T KOG0548|consen 312 EDYEGAIKYYQKALTEHRT-----PDLLSKLKEAEKALKEAERKAY--INPEKAEEEREKGNEAFKKGDYPEAVKHYTEA 384 (539)
T ss_pred HhHHHHHHHHHHHhhhhcC-----HHHHHHHHHHHHHHHHHHHHHh--hChhHHHHHHHHHHHHHhccCHHHHHHHHHHH
Confidence 9999999999885521111 1112333445666666655554 445542 2223356788999999999999998
Q ss_pred HHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC-HHhHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCch
Q 004487 504 TQKYKLRPKKEHYASMVDILCRSGCFDEAEKLMAQM-PFEPD-EIMWSSVINSCRIHKNLEFAKKAADQLFKMEKLRDAA 581 (749)
Q Consensus 504 ~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 581 (749)
+.. -+-|...|+...-+|.+.|.+.+|++-.+.. ...|+ ...|.-=..++....+++.|...|++.++.+| .+..
T Consensus 385 Ikr--~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~eale~dp-~~~e 461 (539)
T KOG0548|consen 385 IKR--DPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEALELDP-SNAE 461 (539)
T ss_pred Hhc--CCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc-hhHH
Confidence 864 2446778999999999999999998877666 44554 33444444455666789999999999999999 7777
Q ss_pred hHHHHHHHHHHcCCchhHHHHH
Q 004487 582 PYVAMSNIYAVAGQWESVSQVK 603 (749)
Q Consensus 582 ~~~~l~~~~~~~g~~~~a~~~~ 603 (749)
.-..+..++......+...++.
T Consensus 462 ~~~~~~rc~~a~~~~~~~ee~~ 483 (539)
T KOG0548|consen 462 AIDGYRRCVEAQRGDETPEETK 483 (539)
T ss_pred HHHHHHHHHHHhhcCCCHHHHH
Confidence 7777776665543333333333
No 112
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.30 E-value=0.002 Score=76.62 Aligned_cols=321 Identities=11% Similarity=-0.009 Sum_probs=167.9
Q ss_pred hCCCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHcCCChHHHHHHHccCCC----CC---c---c--hHHHHHHHHHh
Q 004487 185 VGLADIALGRQVHAFVVKTNFVENVFVANALLDLYSKHDCVVEARKLFGEMPE----VD---G---V--SYNVMITCYAW 252 (749)
Q Consensus 185 ~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~----~~---~---~--~~~~li~~~~~ 252 (749)
...|+.+.....+..+.......+..........+...|++++|...++.... .+ . . ....+...+..
T Consensus 385 ~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 464 (903)
T PRK04841 385 FNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAIN 464 (903)
T ss_pred HhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHh
Confidence 34455555555554432111111222223344445566777777666654321 11 1 1 11112234556
Q ss_pred cCChhHHHHHHHHHHHCCCCCCc----chHHHHHHHHHccCChHHHHHHHHHHHHhcCC-----cchhHHHHHHHHHHhc
Q 004487 253 NEQYKESLKLFRELQFTRFDRSQ----FPFSTLLSVVANKLDLQIGRQIHTQTIVTTAI-----SEVKVANSLVDMYAKC 323 (749)
Q Consensus 253 ~g~~~~A~~~~~~m~~~~~~p~~----~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~-----~~~~~~~~li~~~~~~ 323 (749)
.|++++|...+++....-...+. .....+-..+...|+++.+...+.......-. ........+...+...
T Consensus 465 ~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~ 544 (903)
T PRK04841 465 DGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQ 544 (903)
T ss_pred CCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHC
Confidence 78888888888776553111111 12233334455678888888777776643211 1123445566677788
Q ss_pred CCHHHHHHHHHhcCC----C---Cc----ccHHHHHHHHHhCCChhHHHHHHHHHHHCC--CCcC--HHhHHHHHHHhcc
Q 004487 324 GRFEEAKEIFANLSH----I---ST----VPWTAMISAYVQKGNLEEALNLFIEMCRAN--ISAD--QATFASILRASAE 388 (749)
Q Consensus 324 g~~~~A~~~~~~~~~----~---~~----~~~~~li~~~~~~g~~~~A~~l~~~m~~~g--~~p~--~~t~~~ll~~~~~ 388 (749)
|+++.|...+++... . +. ..+..+...+...|++++|...+.+..... ..+. ...+..+......
T Consensus 545 G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~ 624 (903)
T PRK04841 545 GFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLA 624 (903)
T ss_pred CCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHH
Confidence 888888887766432 1 11 113334455666788888888887765421 1121 2233334445566
Q ss_pred cCcHHHHHHHHHHHHHhCCC--Cch---h-HHHHHHHHHHhcCCHHHHHHHHhhCCCCCcc-------hHHHHHHHHHhc
Q 004487 389 LASLSLGKQLHSFVIRSGFM--SNV---F-SGSALLDMYAKSGSLKDAIQTFKEMPERNIV-------SWNALISACAQN 455 (749)
Q Consensus 389 ~~~~~~a~~~~~~~~~~~~~--~~~---~-~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~-------~~~~li~~~~~~ 455 (749)
.|+.+.|...+.......-. ... . .....+..+...|+.+.|.+.+.....+... .+..+..++...
T Consensus 625 ~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 704 (903)
T PRK04841 625 RGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILL 704 (903)
T ss_pred cCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHc
Confidence 77777777776665442110 000 0 0011223445567777777777665532211 123445556677
Q ss_pred CCHHHHHHHHHHHHHC----CCCCCH-HHHHHHHHHHhccCCHHHHHHHHHHhHH
Q 004487 456 GDAQATLKSFEDMVQS----GYQPDS-VSLLSVLSACSHCGLIEEGLQYFNSMTQ 505 (749)
Q Consensus 456 g~~~~A~~~~~~m~~~----g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 505 (749)
|++++|...+++.... |..++. .+...+..++...|+.++|...+.+..+
T Consensus 705 g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~ 759 (903)
T PRK04841 705 GQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALK 759 (903)
T ss_pred CCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 7777777777766542 222222 2444555566677777777777766654
No 113
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=98.30 E-value=1.7e-05 Score=68.51 Aligned_cols=118 Identities=14% Similarity=0.130 Sum_probs=99.7
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHhHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCchhHHHHHHHH
Q 004487 513 KEHYASMVDILCRSGCFDEAEKLMAQM-PFEP-DEIMWSSVINSCRIHKNLEFAKKAADQLFKMEKLRDAAPYVAMSNIY 590 (749)
Q Consensus 513 ~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 590 (749)
.+..-.+...+...|++++|.++|+-. ...| +..-|-.|...|...|++++|+..|.++..++| +++.++..++.+|
T Consensus 35 l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~-ddp~~~~~ag~c~ 113 (157)
T PRK15363 35 LNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKI-DAPQAPWAAAECY 113 (157)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCchHHHHHHHHH
Confidence 344455667788899999999999888 5556 577888999999999999999999999999999 9999999999999
Q ss_pred HHcCCchhHHHHHHHHHhCCCccCCceeEEEeCCEEEEEEeCCCCCcChHHHHHHHHHHHHHHH
Q 004487 591 AVAGQWESVSQVKKAMRERGVRKVTAYSWVELKSKVHVFTANDELHPQTNEIRRKIENLMQEMK 654 (749)
Q Consensus 591 ~~~g~~~~a~~~~~~m~~~g~~~~~~~s~~~~~~~~~~f~~~~~~~~~~~~~~~~l~~l~~~m~ 654 (749)
...|+.+.|.+.|+...... ..+|+..++..+.+..+..+.
T Consensus 114 L~lG~~~~A~~aF~~Ai~~~-----------------------~~~~~~~~l~~~A~~~L~~l~ 154 (157)
T PRK15363 114 LACDNVCYAIKALKAVVRIC-----------------------GEVSEHQILRQRAEKMLQQLS 154 (157)
T ss_pred HHcCCHHHHHHHHHHHHHHh-----------------------ccChhHHHHHHHHHHHHHHhh
Confidence 99999999999999876542 136777888888877776664
No 114
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.28 E-value=0.0014 Score=66.65 Aligned_cols=140 Identities=17% Similarity=0.156 Sum_probs=106.3
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH-HHHHhccCCHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHHH
Q 004487 448 LISACAQNGDAQATLKSFEDMVQSGYQPDSVSLLSV-LSACSHCGLIEEGLQYFNSMTQKYKLRPK-KEHYASMVDILCR 525 (749)
Q Consensus 448 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l-l~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~ 525 (749)
..-.+...|++++|+..++.+.. -.||...|..+ ...+...++.++|.+.++.+.. ..|+ ....-.+..+|.+
T Consensus 312 ~A~~~~~~~~~d~A~~~l~~L~~--~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~---l~P~~~~l~~~~a~all~ 386 (484)
T COG4783 312 RALQTYLAGQYDEALKLLQPLIA--AQPDNPYYLELAGDILLEANKAKEAIERLKKALA---LDPNSPLLQLNLAQALLK 386 (484)
T ss_pred HHHHHHHhcccchHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHh---cCCCccHHHHHHHHHHHh
Confidence 33445667888999999999887 46766655544 4468888999999999988874 4666 4455567788889
Q ss_pred cCCHHHHHHHHHhC--CCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHcCCchhHHHHH
Q 004487 526 SGCFDEAEKLMAQM--PFEPDEIMWSSVINSCRIHKNLEFAKKAADQLFKMEKLRDAAPYVAMSNIYAVAGQWESVSQVK 603 (749)
Q Consensus 526 ~g~~~~A~~~~~~~--~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 603 (749)
.|++.+|..+++.. ..+-|+..|..|..+|...|+..++.... +..|+..|+|++|....
T Consensus 387 ~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~------------------AE~~~~~G~~~~A~~~l 448 (484)
T COG4783 387 GGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLAR------------------AEGYALAGRLEQAIIFL 448 (484)
T ss_pred cCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHH------------------HHHHHhCCCHHHHHHHH
Confidence 99999999988887 33346888999999999998877776654 44677788999999998
Q ss_pred HHHHhCC
Q 004487 604 KAMRERG 610 (749)
Q Consensus 604 ~~m~~~g 610 (749)
...+++.
T Consensus 449 ~~A~~~~ 455 (484)
T COG4783 449 MRASQQV 455 (484)
T ss_pred HHHHHhc
Confidence 8887764
No 115
>PLN02789 farnesyltranstransferase
Probab=98.26 E-value=0.00027 Score=71.04 Aligned_cols=181 Identities=10% Similarity=0.128 Sum_probs=122.4
Q ss_pred HHhcC-CHHHHHHHHhhCCC---CCcchHHHHHHHHHhcCCH--HHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCCH
Q 004487 421 YAKSG-SLKDAIQTFKEMPE---RNIVSWNALISACAQNGDA--QATLKSFEDMVQSGYQP-DSVSLLSVLSACSHCGLI 493 (749)
Q Consensus 421 y~~~g-~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~--~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~ 493 (749)
+.+.| .+++++..++++.+ .+..+|+.....+.+.|+. ++++.+++++.+ ..| |..+|.....++.+.|++
T Consensus 81 L~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~~~~el~~~~kal~--~dpkNy~AW~~R~w~l~~l~~~ 158 (320)
T PLN02789 81 LEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDAANKELEFTRKILS--LDAKNYHAWSHRQWVLRTLGGW 158 (320)
T ss_pred HHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchhhHHHHHHHHHHHH--hCcccHHHHHHHHHHHHHhhhH
Confidence 33444 45777777766552 3445666554445555543 677888888887 444 455788777788888888
Q ss_pred HHHHHHHHHhHHhcCCCCChHHHHHHHHHHHHc---CCH----HHHHHHHHhC-CCCC-CHHhHHHHHHHHHhc----CC
Q 004487 494 EEGLQYFNSMTQKYKLRPKKEHYASMVDILCRS---GCF----DEAEKLMAQM-PFEP-DEIMWSSVINSCRIH----KN 560 (749)
Q Consensus 494 ~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~---g~~----~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~----g~ 560 (749)
+++++.++.+.+. + .-+...|+.....+.+. |.+ +++.++..++ ...| |...|+.+.+.+... ++
T Consensus 159 ~eeL~~~~~~I~~-d-~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~ 236 (320)
T PLN02789 159 EDELEYCHQLLEE-D-VRNNSAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAILANPRNESPWRYLRGLFKDDKEALVS 236 (320)
T ss_pred HHHHHHHHHHHHH-C-CCchhHHHHHHHHHHhccccccccccHHHHHHHHHHHHHhCCCCcCHHHHHHHHHhcCCccccc
Confidence 9999988888754 1 22344555554444443 222 4566666444 5556 588999999888774 34
Q ss_pred HHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHcC------------------CchhHHHHHHHH
Q 004487 561 LEFAKKAADQLFKMEKLRDAAPYVAMSNIYAVAG------------------QWESVSQVKKAM 606 (749)
Q Consensus 561 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g------------------~~~~a~~~~~~m 606 (749)
..+|...+.++++.+| .++.+...|+++|+... ..++|.++.+.+
T Consensus 237 ~~~~~~~~~~~~~~~~-~s~~al~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~l 299 (320)
T PLN02789 237 DPEVSSVCLEVLSKDS-NHVFALSDLLDLLCEGLQPTAEFRDTVDTLAEELSDSTLAQAVCSEL 299 (320)
T ss_pred chhHHHHHHHhhcccC-CcHHHHHHHHHHHHhhhccchhhhhhhhccccccccHHHHHHHHHHH
Confidence 5679999999999998 89999999999998743 235677777776
No 116
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.25 E-value=3e-05 Score=81.72 Aligned_cols=217 Identities=17% Similarity=0.141 Sum_probs=126.7
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhcCCCCcccHHHHHHHHHhCCChhHHHHHHHHHHHCCCCcCHHhHHHHHHHhccc
Q 004487 310 VKVANSLVDMYAKCGRFEEAKEIFANLSHISTVPWTAMISAYVQKGNLEEALNLFIEMCRANISADQATFASILRASAEL 389 (749)
Q Consensus 310 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~ 389 (749)
-..-..+...+.++|-...|..+|+++. .|...|..|...|+..+|..+..+-.+
T Consensus 398 Wq~q~~laell~slGitksAl~I~Erle-----mw~~vi~CY~~lg~~~kaeei~~q~le-------------------- 452 (777)
T KOG1128|consen 398 WQLQRLLAELLLSLGITKSALVIFERLE-----MWDPVILCYLLLGQHGKAEEINRQELE-------------------- 452 (777)
T ss_pred chHHHHHHHHHHHcchHHHHHHHHHhHH-----HHHHHHHHHHHhcccchHHHHHHHHhc--------------------
Confidence 3344455555556666666666665432 344555555555555555555544443
Q ss_pred CcHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHH
Q 004487 390 ASLSLGKQLHSFVIRSGFMSNVFSGSALLDMYAKSGSLKDAIQTFKEMPERNIVSWNALISACAQNGDAQATLKSFEDMV 469 (749)
Q Consensus 390 ~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 469 (749)
-+||...|..+.+......-+++|.++++....+--..|+.+ ..+.++++++.+.|+.-.
T Consensus 453 -----------------k~~d~~lyc~LGDv~~d~s~yEkawElsn~~sarA~r~~~~~---~~~~~~fs~~~~hle~sl 512 (777)
T KOG1128|consen 453 -----------------KDPDPRLYCLLGDVLHDPSLYEKAWELSNYISARAQRSLALL---ILSNKDFSEADKHLERSL 512 (777)
T ss_pred -----------------CCCcchhHHHhhhhccChHHHHHHHHHhhhhhHHHHHhhccc---cccchhHHHHHHHHHHHh
Confidence 234444455555544444445666666655432211111111 223577788888877766
Q ss_pred HCCCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHHHcCCHHHHHHHHHhC-CC-CCCH
Q 004487 470 QSGYQPD-SVSLLSVLSACSHCGLIEEGLQYFNSMTQKYKLRPK-KEHYASMVDILCRSGCFDEAEKLMAQM-PF-EPDE 545 (749)
Q Consensus 470 ~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~-~~-~p~~ 545 (749)
+ +.|= ..||-.+..+..+.++++.+.+.|.... .+.|+ .+.|+.+-.+|.+.|+..+|...+++. .. .-+.
T Consensus 513 ~--~nplq~~~wf~~G~~ALqlek~q~av~aF~rcv---tL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~w 587 (777)
T KOG1128|consen 513 E--INPLQLGTWFGLGCAALQLEKEQAAVKAFHRCV---TLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQHW 587 (777)
T ss_pred h--cCccchhHHHhccHHHHHHhhhHHHHHHHHHHh---hcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCCC
Confidence 6 3333 3467777777777788888888777666 34554 456777777777777777777777666 22 2235
Q ss_pred HhHHHHHHHHHhcCCHHHHHHHHHHHhcCCC
Q 004487 546 IMWSSVINSCRIHKNLEFAKKAADQLFKMEK 576 (749)
Q Consensus 546 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~ 576 (749)
.+|...+-....-|.++.|.+++.++.++..
T Consensus 588 ~iWENymlvsvdvge~eda~~A~~rll~~~~ 618 (777)
T KOG1128|consen 588 QIWENYMLVSVDVGEFEDAIKAYHRLLDLRK 618 (777)
T ss_pred eeeechhhhhhhcccHHHHHHHHHHHHHhhh
Confidence 5666666666777777777777777766543
No 117
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.24 E-value=6.8e-05 Score=77.10 Aligned_cols=214 Identities=14% Similarity=0.161 Sum_probs=160.5
Q ss_pred HccCChHHHHHHHHHHHHhcCCcchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCCc---ccHHHHHHHHHhCCChhHHHH
Q 004487 286 ANKLDLQIGRQIHTQTIVTTAISEVKVANSLVDMYAKCGRFEEAKEIFANLSHIST---VPWTAMISAYVQKGNLEEALN 362 (749)
Q Consensus 286 ~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~li~~~~~~g~~~~A~~ 362 (749)
-+.|++..|.-.++..++.. +.+...|.-|....+..++-..|+..+++..+.|+ ...-+|.-.|...|.-.+|+.
T Consensus 296 m~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~Al~ 374 (579)
T KOG1125|consen 296 MKNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQALK 374 (579)
T ss_pred HhcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHHHHH
Confidence 35677777777777777765 45778888888888888888889999888876544 446666778999999999999
Q ss_pred HHHHHHHCCCC-----c---CHHhHHHHHHHhcccCcHHHHHHHH-HHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHH
Q 004487 363 LFIEMCRANIS-----A---DQATFASILRASAELASLSLGKQLH-SFVIRSGFMSNVFSGSALLDMYAKSGSLKDAIQT 433 (749)
Q Consensus 363 l~~~m~~~g~~-----p---~~~t~~~ll~~~~~~~~~~~a~~~~-~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~ 433 (749)
.++.-.....+ + +..+-.. ........+....++| +.....+..+|+.+...|.-.|--.|++++|...
T Consensus 375 ~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDc 452 (579)
T KOG1125|consen 375 MLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDC 452 (579)
T ss_pred HHHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHH
Confidence 99888653210 0 0000000 1222233344455544 4445556668888899999999999999999999
Q ss_pred HhhCC---CCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHhccCCHHHHHHHHHHhH
Q 004487 434 FKEMP---ERNIVSWNALISACAQNGDAQATLKSFEDMVQSGYQPDSV-SLLSVLSACSHCGLIEEGLQYFNSMT 504 (749)
Q Consensus 434 ~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~m~ 504 (749)
|+... ..|...||-|...++...+.++|++.|.+.++ ++|+.+ ....|.-+|...|.+++|.++|-...
T Consensus 453 f~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALq--LqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL 525 (579)
T KOG1125|consen 453 FEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQ--LQPGYVRVRYNLGISCMNLGAYKEAVKHLLEAL 525 (579)
T ss_pred HHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHh--cCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHH
Confidence 99876 34678999999999999999999999999999 899976 55567778999999999999886554
No 118
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.24 E-value=0.0025 Score=61.40 Aligned_cols=328 Identities=15% Similarity=0.144 Sum_probs=197.3
Q ss_pred HHHHHHHcCCChHHHHHHHccCCCCCcchHHHHH---HHHHhcCChhHHHHHHHHHHHCCCCCCcchHHHHHHHHHccCC
Q 004487 214 ALLDLYSKHDCVVEARKLFGEMPEVDGVSYNVMI---TCYAWNEQYKESLKLFRELQFTRFDRSQFPFSTLLSVVANKLD 290 (749)
Q Consensus 214 ~Li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li---~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~ 290 (749)
-|...+...|++.+|..-|....+-|+..|-++. ..|...|+..-|+.=+.+..+. +||-..-
T Consensus 43 ElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel--KpDF~~A------------ 108 (504)
T KOG0624|consen 43 ELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLEL--KPDFMAA------------ 108 (504)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhc--CccHHHH------------
Confidence 3455556678888888888888887887777765 3677778777777777766542 4442110
Q ss_pred hHHHHHHHHHHHHhcCCcchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCCcccHHHHHHHHHhCCChhHHHHHHHHHHHC
Q 004487 291 LQIGRQIHTQTIVTTAISEVKVANSLVDMYAKCGRFEEAKEIFANLSHISTVPWTAMISAYVQKGNLEEALNLFIEMCRA 370 (749)
Q Consensus 291 ~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 370 (749)
+ +. -...+.|.|.++.|..-|+.+.+.++.- +....++.+.-..++-..
T Consensus 109 ----R------iQ------------Rg~vllK~Gele~A~~DF~~vl~~~~s~-~~~~eaqskl~~~~e~~~-------- 157 (504)
T KOG0624|consen 109 ----R------IQ------------RGVVLLKQGELEQAEADFDQVLQHEPSN-GLVLEAQSKLALIQEHWV-------- 157 (504)
T ss_pred ----H------HH------------hchhhhhcccHHHHHHHHHHHHhcCCCc-chhHHHHHHHHhHHHHHH--------
Confidence 0 00 1123567777777777777765433211 011111111111111111
Q ss_pred CCCcCHHhHHHHHHHhcccCcHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCC---CCCcchHHH
Q 004487 371 NISADQATFASILRASAELASLSLGKQLHSFVIRSGFMSNVFSGSALLDMYAKSGSLKDAIQTFKEMP---ERNIVSWNA 447 (749)
Q Consensus 371 g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~ 447 (749)
....+..+...|+...+......+++.. +.|...+..-..+|...|++..|+.-+.... ..+....--
T Consensus 158 --------l~~ql~s~~~~GD~~~ai~~i~~llEi~-~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~DnTe~~yk 228 (504)
T KOG0624|consen 158 --------LVQQLKSASGSGDCQNAIEMITHLLEIQ-PWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQDNTEGHYK 228 (504)
T ss_pred --------HHHHHHHHhcCCchhhHHHHHHHHHhcC-cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhccccchHHHHH
Confidence 1122223344556666666665555532 3466666677778888888888776555433 455666666
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH----HHHH-------H--HHHhccCCHHHHHHHHHHhHHhcCCCCC--
Q 004487 448 LISACAQNGDAQATLKSFEDMVQSGYQPDSVS----LLSV-------L--SACSHCGLIEEGLQYFNSMTQKYKLRPK-- 512 (749)
Q Consensus 448 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t----~~~l-------l--~a~~~~g~~~~a~~~~~~m~~~~~~~p~-- 512 (749)
+-..+.+.|+.+.++...++-++ +.||... |..| - ......+.|.++++-.+...+. .|.
T Consensus 229 is~L~Y~vgd~~~sL~~iRECLK--ldpdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~---ep~~~ 303 (504)
T KOG0624|consen 229 ISQLLYTVGDAENSLKEIRECLK--LDPDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKN---EPEET 303 (504)
T ss_pred HHHHHHhhhhHHHHHHHHHHHHc--cCcchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhc---CCccc
Confidence 66677778888888887777776 6677542 1111 0 1123355666666666655532 444
Q ss_pred ---hHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC-HHhHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCchhHHHHH
Q 004487 513 ---KEHYASMVDILCRSGCFDEAEKLMAQM-PFEPD-EIMWSSVINSCRIHKNLEFAKKAADQLFKMEKLRDAAPYVAMS 587 (749)
Q Consensus 513 ---~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 587 (749)
...+..+-..+...|++.+|++.-.+. .+.|| +.++---..+|.....++.|+.-|+++.+.++ .|..+-.
T Consensus 304 ~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n~-sn~~~re--- 379 (504)
T KOG0624|consen 304 MIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDIDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELNE-SNTRARE--- 379 (504)
T ss_pred ceeeeeeheeeecccccCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCc-ccHHHHH---
Confidence 223345556777888999999888776 66776 77777777888888999999999999999998 6554432
Q ss_pred HHHHHcCCchhHHHHHHHHHhCCC
Q 004487 588 NIYAVAGQWESVSQVKKAMRERGV 611 (749)
Q Consensus 588 ~~~~~~g~~~~a~~~~~~m~~~g~ 611 (749)
| .+.|.++.+...++..
T Consensus 380 ------G-le~Akrlkkqs~kRDY 396 (504)
T KOG0624|consen 380 ------G-LERAKRLKKQSGKRDY 396 (504)
T ss_pred ------H-HHHHHHHHHHhccchH
Confidence 2 2556666655544433
No 119
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.22 E-value=7.6e-05 Score=72.72 Aligned_cols=182 Identities=12% Similarity=0.069 Sum_probs=126.7
Q ss_pred cCHHhHHHHHHHhcccCcHHHHHHHHHHHHHhCCC-C-chhHHHHHHHHHHhcCCHHHHHHHHhhCCC--CC-cc---hH
Q 004487 374 ADQATFASILRASAELASLSLGKQLHSFVIRSGFM-S-NVFSGSALLDMYAKSGSLKDAIQTFKEMPE--RN-IV---SW 445 (749)
Q Consensus 374 p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~-~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~~-~~---~~ 445 (749)
.....+......+...|+++.|...+..+.+.... + ....+..+...|.+.|++++|...|+++.+ |+ .. .+
T Consensus 31 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~ 110 (235)
T TIGR03302 31 WPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAY 110 (235)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHH
Confidence 34566777778889999999999999988775432 1 124667788999999999999999998863 32 22 45
Q ss_pred HHHHHHHHhc--------CCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHH
Q 004487 446 NALISACAQN--------GDAQATLKSFEDMVQSGYQPDSV-SLLSVLSACSHCGLIEEGLQYFNSMTQKYKLRPKKEHY 516 (749)
Q Consensus 446 ~~li~~~~~~--------g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~ 516 (749)
..+..++.+. |+.++|.+.|+++.. ..|+.. ....+..... ... ... ...
T Consensus 111 ~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~--~~p~~~~~~~a~~~~~~----~~~------~~~---------~~~ 169 (235)
T TIGR03302 111 YLRGLSNYNQIDRVDRDQTAAREAFEAFQELIR--RYPNSEYAPDAKKRMDY----LRN------RLA---------GKE 169 (235)
T ss_pred HHHHHHHHHhcccccCCHHHHHHHHHHHHHHHH--HCCCChhHHHHHHHHHH----HHH------HHH---------HHH
Confidence 5555556554 788999999999988 456543 2222211100 000 000 112
Q ss_pred HHHHHHHHHcCCHHHHHHHHHhC----CCCC-CHHhHHHHHHHHHhcCCHHHHHHHHHHHhcCCC
Q 004487 517 ASMVDILCRSGCFDEAEKLMAQM----PFEP-DEIMWSSVINSCRIHKNLEFAKKAADQLFKMEK 576 (749)
Q Consensus 517 ~~li~~~~~~g~~~~A~~~~~~~----~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~ 576 (749)
..+.+.|.+.|++++|...+++. |-.| ....|..+..++...|+.++|...++.+....|
T Consensus 170 ~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~~ 234 (235)
T TIGR03302 170 LYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANYP 234 (235)
T ss_pred HHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 24667788999999999988887 2233 356888899999999999999998888776554
No 120
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.20 E-value=1.8e-05 Score=69.86 Aligned_cols=99 Identities=8% Similarity=0.024 Sum_probs=88.4
Q ss_pred CCCChHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHhHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCchhHHHH
Q 004487 509 LRPKKEHYASMVDILCRSGCFDEAEKLMAQM-PFEP-DEIMWSSVINSCRIHKNLEFAKKAADQLFKMEKLRDAAPYVAM 586 (749)
Q Consensus 509 ~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 586 (749)
+.|+ .+..+...+...|++++|.+.|+.. ...| +...|..+..++...|++++|...|+++++++| .++..+..+
T Consensus 22 ~~p~--~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p-~~~~a~~~l 98 (144)
T PRK15359 22 VDPE--TVYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDA-SHPEPVYQT 98 (144)
T ss_pred cCHH--HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCcHHHHHH
Confidence 4454 3556788899999999999999998 5556 688999999999999999999999999999999 999999999
Q ss_pred HHHHHHcCCchhHHHHHHHHHhCC
Q 004487 587 SNIYAVAGQWESVSQVKKAMRERG 610 (749)
Q Consensus 587 ~~~~~~~g~~~~a~~~~~~m~~~g 610 (749)
+.++...|++++|...+....+..
T Consensus 99 g~~l~~~g~~~eAi~~~~~Al~~~ 122 (144)
T PRK15359 99 GVCLKMMGEPGLAREAFQTAIKMS 122 (144)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC
Confidence 999999999999999999987653
No 121
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.18 E-value=0.00013 Score=80.93 Aligned_cols=140 Identities=13% Similarity=0.041 Sum_probs=116.9
Q ss_pred CCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCC-hHHHH
Q 004487 440 RNIVSWNALISACAQNGDAQATLKSFEDMVQSGYQPDSV-SLLSVLSACSHCGLIEEGLQYFNSMTQKYKLRPK-KEHYA 517 (749)
Q Consensus 440 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~ 517 (749)
.++..+-.|.....+.|.+++|..+++...+ +.||.. .+..+..++.+.+.+++|+...++... ..|+ .....
T Consensus 84 ~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~--~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~---~~p~~~~~~~ 158 (694)
T PRK15179 84 HTELFQVLVARALEAAHRSDEGLAVWRGIHQ--RFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFS---GGSSSAREIL 158 (694)
T ss_pred ccHHHHHHHHHHHHHcCCcHHHHHHHHHHHh--hCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhh---cCCCCHHHHH
Confidence 3467778888888999999999999999999 788876 777888899999999999999988874 4564 56777
Q ss_pred HHHHHHHHcCCHHHHHHHHHhC-CCCCC-HHhHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCchhHHH
Q 004487 518 SMVDILCRSGCFDEAEKLMAQM-PFEPD-EIMWSSVINSCRIHKNLEFAKKAADQLFKMEKLRDAAPYVA 585 (749)
Q Consensus 518 ~li~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 585 (749)
.+..++...|++++|..+|++. ...|+ ..+|-++..++...|+.++|...|+++++... +....|..
T Consensus 159 ~~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~-~~~~~~~~ 227 (694)
T PRK15179 159 LEAKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIG-DGARKLTR 227 (694)
T ss_pred HHHHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhC-cchHHHHH
Confidence 8889999999999999999998 33444 78899999999999999999999999999876 44455443
No 122
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.15 E-value=0.00061 Score=77.08 Aligned_cols=212 Identities=12% Similarity=0.145 Sum_probs=164.2
Q ss_pred CCc-chHHHHHHHHHccCChHHHHHHHHHHHHhc-C---CcchhHHHHHHHHHHhcCCHHHHHHHHHhcCCC-Cc-ccHH
Q 004487 273 RSQ-FPFSTLLSVVANKLDLQIGRQIHTQTIVTT-A---ISEVKVANSLVDMYAKCGRFEEAKEIFANLSHI-ST-VPWT 345 (749)
Q Consensus 273 p~~-~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g-~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~~-~~~~ 345 (749)
||+ ..|..-|....+.++.+.|+.+.+.+++.- + .--..+|.+++++-.--|.-+...++|++..+- |. ..|.
T Consensus 1455 PNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqycd~~~V~~ 1534 (1710)
T KOG1070|consen 1455 PNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYCDAYTVHL 1534 (1710)
T ss_pred CCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhcchHHHHH
Confidence 443 345555666667777777777777777653 1 123467888888888888888899999988763 33 3388
Q ss_pred HHHHHHHhCCChhHHHHHHHHHHHCCCCcCHHhHHHHHHHhcccCcHHHHHHHHHHHHHhCC-CCchhHHHHHHHHHHhc
Q 004487 346 AMISAYVQKGNLEEALNLFIEMCRANISADQATFASILRASAELASLSLGKQLHSFVIRSGF-MSNVFSGSALLDMYAKS 424 (749)
Q Consensus 346 ~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~li~~y~~~ 424 (749)
.|...|.+.+.+++|-++|+.|.+. ..-....|...+..+.+..+-+.|..++..+.+.-. .-.+.+..-.+.+-.++
T Consensus 1535 ~L~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~ 1613 (1710)
T KOG1070|consen 1535 KLLGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFKY 1613 (1710)
T ss_pred HHHHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhc
Confidence 9999999999999999999999875 335667888888888888888899998888777532 23456667778888999
Q ss_pred CCHHHHHHHHhhCCC---CCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH--HHHHHHH
Q 004487 425 GSLKDAIQTFKEMPE---RNIVSWNALISACAQNGDAQATLKSFEDMVQSGYQPDSV--SLLSVLS 485 (749)
Q Consensus 425 g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~--t~~~ll~ 485 (749)
|+.+.++.+|+.... .-...|+..|..-.++|+.+.+..+|++....++.|-.. .|.-.|.
T Consensus 1614 GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLe 1679 (1710)
T KOG1070|consen 1614 GDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLE 1679 (1710)
T ss_pred CCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHH
Confidence 999999999998873 457899999999999999999999999999998887653 4444443
No 123
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.15 E-value=6.3e-05 Score=79.33 Aligned_cols=189 Identities=15% Similarity=0.142 Sum_probs=111.3
Q ss_pred CCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 004487 406 GFMSNVFSGSALLDMYAKSGSLKDAIQTFKEMPERNIVSWNALISACAQNGDAQATLKSFEDMVQSGYQPDSVSLLSVLS 485 (749)
Q Consensus 406 ~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~ 485 (749)
+++|--..-..+...+.++|-...|..+|++. ..|--.|.+|...|+..+|..+..+-.+ -+||..-|..+.+
T Consensus 393 ~lpp~Wq~q~~laell~slGitksAl~I~Erl-----emw~~vi~CY~~lg~~~kaeei~~q~le--k~~d~~lyc~LGD 465 (777)
T KOG1128|consen 393 HLPPIWQLQRLLAELLLSLGITKSALVIFERL-----EMWDPVILCYLLLGQHGKAEEINRQELE--KDPDPRLYCLLGD 465 (777)
T ss_pred CCCCcchHHHHHHHHHHHcchHHHHHHHHHhH-----HHHHHHHHHHHHhcccchHHHHHHHHhc--CCCcchhHHHhhh
Confidence 34555555566777777778888888877764 3566677777777777777777777666 4677777777777
Q ss_pred HHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHhHHHHHHHHHhcCCHHH
Q 004487 486 ACSHCGLIEEGLQYFNSMTQKYKLRPKKEHYASMVDILCRSGCFDEAEKLMAQM-PFEP-DEIMWSSVINSCRIHKNLEF 563 (749)
Q Consensus 486 a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~ 563 (749)
..-...-+++|+++++....+ .-..+.....+.+++.++.+.++.- .+.| ...+|-.+..+..+.++++.
T Consensus 466 v~~d~s~yEkawElsn~~sar--------A~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~ 537 (777)
T KOG1128|consen 466 VLHDPSLYEKAWELSNYISAR--------AQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQA 537 (777)
T ss_pred hccChHHHHHHHHHhhhhhHH--------HHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHH
Confidence 766666677777776654432 0001111122345555555555443 3333 24455555555555555555
Q ss_pred HHHHHHHHhcCCCCCCchhHHHHHHHHHHcCCchhHHHHHHHHHhCC
Q 004487 564 AKKAADQLFKMEKLRDAAPYVAMSNIYAVAGQWESVSQVKKAMRERG 610 (749)
Q Consensus 564 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 610 (749)
|.+.|...+.++| .+...|+.++.+|.+.|+-.+|...+++..+..
T Consensus 538 av~aF~rcvtL~P-d~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn 583 (777)
T KOG1128|consen 538 AVKAFHRCVTLEP-DNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN 583 (777)
T ss_pred HHHHHHHHhhcCC-CchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC
Confidence 5555555555555 555555555555555555555555555554443
No 124
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.15 E-value=0.00029 Score=65.84 Aligned_cols=155 Identities=11% Similarity=0.172 Sum_probs=116.0
Q ss_pred HHHHHhcCCHHHHHHHHhhCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHH
Q 004487 418 LDMYAKSGSLKDAIQTFKEMPERNIVSWNALISACAQNGDAQATLKSFEDMVQSGYQPDSVSLLSVLSACSHCGLIEEGL 497 (749)
Q Consensus 418 i~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~ 497 (749)
+-.|.+.|+++......+.+..+. ..+...++.++++..+++..+.. +.|...|..+...|...|++++|.
T Consensus 23 ~~~Y~~~g~~~~v~~~~~~~~~~~--------~~~~~~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~~A~ 93 (198)
T PRK10370 23 VGSYLLSPKWQAVRAEYQRLADPL--------HQFASQQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDYDNAL 93 (198)
T ss_pred HHHHHHcchHHHHHHHHHHHhCcc--------ccccCchhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHH
Confidence 456788888777655544332221 01223567788888888877742 445668888888999999999999
Q ss_pred HHHHHhHHhcCCCC-ChHHHHHHHHHH-HHcCC--HHHHHHHHHhC-CCCC-CHHhHHHHHHHHHhcCCHHHHHHHHHHH
Q 004487 498 QYFNSMTQKYKLRP-KKEHYASMVDIL-CRSGC--FDEAEKLMAQM-PFEP-DEIMWSSVINSCRIHKNLEFAKKAADQL 571 (749)
Q Consensus 498 ~~~~~m~~~~~~~p-~~~~~~~li~~~-~~~g~--~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 571 (749)
..|+...+ +.| +...+..+..++ .+.|+ .++|.+++++. ...| +...+..+...+...|++++|+..++++
T Consensus 94 ~a~~~Al~---l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~a 170 (198)
T PRK10370 94 LAYRQALQ---LRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKV 170 (198)
T ss_pred HHHHHHHH---hCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 99998874 455 567788888764 67787 59999999998 5566 5778888888999999999999999999
Q ss_pred hcCCCCCCchhHHH
Q 004487 572 FKMEKLRDAAPYVA 585 (749)
Q Consensus 572 ~~~~~~~~~~~~~~ 585 (749)
+++.| ++..-+..
T Consensus 171 L~l~~-~~~~r~~~ 183 (198)
T PRK10370 171 LDLNS-PRVNRTQL 183 (198)
T ss_pred HhhCC-CCccHHHH
Confidence 99999 66555443
No 125
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.12 E-value=4.3e-06 Score=53.22 Aligned_cols=35 Identities=46% Similarity=0.746 Sum_probs=32.7
Q ss_pred chHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCh
Q 004487 140 VSFNALITGFAKEGLNEEAIKLFVEMQHLGFKPSD 174 (749)
Q Consensus 140 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~ 174 (749)
++||++|.+|++.|++++|.++|++|.+.|+.||.
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 47999999999999999999999999999999973
No 126
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.12 E-value=5.2e-06 Score=52.83 Aligned_cols=34 Identities=32% Similarity=0.714 Sum_probs=31.4
Q ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 004487 443 VSWNALISACAQNGDAQATLKSFEDMVQSGYQPD 476 (749)
Q Consensus 443 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 476 (749)
.+||+||.+|++.|++++|.++|++|.+.|++||
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 4799999999999999999999999999999997
No 127
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.11 E-value=0.0002 Score=66.71 Aligned_cols=135 Identities=14% Similarity=0.136 Sum_probs=101.6
Q ss_pred CCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHhC--CCCCCHHhHHH
Q 004487 473 YQPDSVSLLSVLSACSHCGLIEEGLQYFNSMTQKYKLRPKKEHYASMVDILCRSGCFDEAEKLMAQM--PFEPDEIMWSS 550 (749)
Q Consensus 473 ~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~ 550 (749)
..|+......+-.++...|+-+....+....... -..+......++....+.|++.+|...+.+. +-.||...|+.
T Consensus 62 ~~p~d~~i~~~a~a~~~~G~a~~~l~~~~~~~~~--~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~ 139 (257)
T COG5010 62 RNPEDLSIAKLATALYLRGDADSSLAVLQKSAIA--YPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNL 139 (257)
T ss_pred cCcchHHHHHHHHHHHhcccccchHHHHhhhhcc--CcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChhhhhH
Confidence 3454433355556677777777777777665432 2334455566888888888888888888887 44457888888
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHcCCchhHHHHHHHHHhCC
Q 004487 551 VINSCRIHKNLEFAKKAADQLFKMEKLRDAAPYVAMSNIYAVAGQWESVSQVKKAMRERG 610 (749)
Q Consensus 551 ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 610 (749)
+..+|-+.|+.++|...|.+++++.| .++..+..|+-.|.-.|+.++|..++......+
T Consensus 140 lgaaldq~Gr~~~Ar~ay~qAl~L~~-~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~ 198 (257)
T COG5010 140 LGAALDQLGRFDEARRAYRQALELAP-NEPSIANNLGMSLLLRGDLEDAETLLLPAYLSP 198 (257)
T ss_pred HHHHHHHccChhHHHHHHHHHHHhcc-CCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCC
Confidence 88888888888888888888888888 888888888888888888888888888776554
No 128
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.06 E-value=0.0019 Score=65.58 Aligned_cols=178 Identities=11% Similarity=0.068 Sum_probs=129.1
Q ss_pred CCHHHHHHHHhhCCC------CCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHH
Q 004487 425 GSLKDAIQTFKEMPE------RNIVSWNALISACAQNGDAQATLKSFEDMVQSGYQPDSVSLLSVLSACSHCGLIEEGLQ 498 (749)
Q Consensus 425 g~~~~A~~~~~~~~~------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~ 498 (749)
.++.+++..-+.++. ++...+...+.+.........+..++. +... +--........-.+...|..++|+.
T Consensus 251 ~RIa~lr~ra~q~p~~~~~d~~~~~~~~~r~~~~~~~~~~~~~~~~~~-~~~~--~~~~aa~YG~A~~~~~~~~~d~A~~ 327 (484)
T COG4783 251 ERIADLRNRAEQSPPYNKLDSPDFQLARARIRAKYEALPNQQAADLLA-KRSK--RGGLAAQYGRALQTYLAGQYDEALK 327 (484)
T ss_pred hHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHhccccccchHHHHH-HHhC--ccchHHHHHHHHHHHHhcccchHHH
Confidence 345566666666662 344455555554433333223332222 2222 1111222223334567899999999
Q ss_pred HHHHhHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC-HHhHHHHHHHHHhcCCHHHHHHHHHHHhcCCC
Q 004487 499 YFNSMTQKYKLRPKKEHYASMVDILCRSGCFDEAEKLMAQM-PFEPD-EIMWSSVINSCRIHKNLEFAKKAADQLFKMEK 576 (749)
Q Consensus 499 ~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~ 576 (749)
.++.+... .+-|+.......+.+.+.++.++|.+.++++ ...|+ ...+-++..++.+.|+..+|+.+++.....+|
T Consensus 328 ~l~~L~~~--~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~all~~g~~~eai~~L~~~~~~~p 405 (484)
T COG4783 328 LLQPLIAA--QPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQALLKGGKPQEAIRILNRYLFNDP 405 (484)
T ss_pred HHHHHHHh--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHhcCChHHHHHHHHHHhhcCC
Confidence 99998864 3345666677889999999999999999998 66776 77788889999999999999999999999999
Q ss_pred CCCchhHHHHHHHHHHcCCchhHHHHHHHHHh
Q 004487 577 LRDAAPYVAMSNIYAVAGQWESVSQVKKAMRE 608 (749)
Q Consensus 577 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 608 (749)
.|+..|..|+..|...|+..++..-+.++-.
T Consensus 406 -~dp~~w~~LAqay~~~g~~~~a~~A~AE~~~ 436 (484)
T COG4783 406 -EDPNGWDLLAQAYAELGNRAEALLARAEGYA 436 (484)
T ss_pred -CCchHHHHHHHHHHHhCchHHHHHHHHHHHH
Confidence 9999999999999999999999998887643
No 129
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.02 E-value=0.00056 Score=63.75 Aligned_cols=117 Identities=15% Similarity=0.146 Sum_probs=58.0
Q ss_pred HHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHhHHHHHHHHHhcCC
Q 004487 483 VLSACSHCGLIEEGLQYFNSMTQKYKLRPKKEHYASMVDILCRSGCFDEAEKLMAQM-PFEP-DEIMWSSVINSCRIHKN 560 (749)
Q Consensus 483 ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~ 560 (749)
........|++.+|...|++... .-++|.+.|+.+.-+|.+.|++++|..-|.+. .+.| ++...+.|...+...||
T Consensus 106 ~gk~~~~~g~~~~A~~~~rkA~~--l~p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd 183 (257)
T COG5010 106 QGKNQIRNGNFGEAVSVLRKAAR--LAPTDWEAWNLLGAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGD 183 (257)
T ss_pred HHHHHHHhcchHHHHHHHHHHhc--cCCCChhhhhHHHHHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCC
Confidence 44444445555555555544442 22334445555555555555555555444444 2333 24444555555555555
Q ss_pred HHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHcCCchhHHHH
Q 004487 561 LEFAKKAADQLFKMEKLRDAAPYVAMSNIYAVAGQWESVSQV 602 (749)
Q Consensus 561 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 602 (749)
.+.|+.++.......+ .+...-..|.-.....|++++|..+
T Consensus 184 ~~~A~~lll~a~l~~~-ad~~v~~NLAl~~~~~g~~~~A~~i 224 (257)
T COG5010 184 LEDAETLLLPAYLSPA-ADSRVRQNLALVVGLQGDFREAEDI 224 (257)
T ss_pred HHHHHHHHHHHHhCCC-CchHHHHHHHHHHhhcCChHHHHhh
Confidence 5555555555555554 4555555555555555555555544
No 130
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.01 E-value=0.00022 Score=73.11 Aligned_cols=123 Identities=13% Similarity=0.165 Sum_probs=102.0
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHhHHHHHHHHH
Q 004487 479 SLLSVLSACSHCGLIEEGLQYFNSMTQKYKLRPKKEHYASMVDILCRSGCFDEAEKLMAQM-PFEP-DEIMWSSVINSCR 556 (749)
Q Consensus 479 t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~ 556 (749)
-...|+..+...++++.|.++|+++.+. .|+ ....++..+...++-.+|.+++++. ...| |...+......|.
T Consensus 171 Lv~~Ll~~l~~t~~~~~ai~lle~L~~~---~pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl 245 (395)
T PF09295_consen 171 LVDTLLKYLSLTQRYDEAIELLEKLRER---DPE--VAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLL 245 (395)
T ss_pred HHHHHHHHHhhcccHHHHHHHHHHHHhc---CCc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 4456667777888999999999998854 355 4455788888888888999998887 3334 5666666667788
Q ss_pred hcCCHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHcCCchhHHHHHHHHH
Q 004487 557 IHKNLEFAKKAADQLFKMEKLRDAAPYVAMSNIYAVAGQWESVSQVKKAMR 607 (749)
Q Consensus 557 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 607 (749)
..++.+.|+.+++++.++.| .+..+|..|+.+|...|++++|...++.+.
T Consensus 246 ~k~~~~lAL~iAk~av~lsP-~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 246 SKKKYELALEIAKKAVELSP-SEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred hcCCHHHHHHHHHHHHHhCc-hhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 99999999999999999999 999999999999999999999999998774
No 131
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.00 E-value=0.00081 Score=74.75 Aligned_cols=142 Identities=9% Similarity=0.139 Sum_probs=116.2
Q ss_pred CCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCC--CC-cchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH-HHH
Q 004487 406 GFMSNVFSGSALLDMYAKSGSLKDAIQTFKEMPE--RN-IVSWNALISACAQNGDAQATLKSFEDMVQSGYQPDSV-SLL 481 (749)
Q Consensus 406 ~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~ 481 (749)
....+...+-.|.......|.+++|..+++...+ || ...+..+...+.+.+++++|+..+++... ..|+.. ...
T Consensus 81 ~~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~--~~p~~~~~~~ 158 (694)
T PRK15179 81 RYPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFS--GGSSSAREIL 158 (694)
T ss_pred hccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhh--cCCCCHHHHH
Confidence 3455688888899999999999999999998873 44 55777788999999999999999999998 567766 555
Q ss_pred HHHHHHhccCCHHHHHHHHHHhHHhcCCCC-ChHHHHHHHHHHHHcCCHHHHHHHHHhC--CCCCCHHhHHHHH
Q 004487 482 SVLSACSHCGLIEEGLQYFNSMTQKYKLRP-KKEHYASMVDILCRSGCFDEAEKLMAQM--PFEPDEIMWSSVI 552 (749)
Q Consensus 482 ~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~ll 552 (749)
.+..++.+.|.+++|..+|++.... .| +...+..+..++-..|+.++|...|++. ...|....|+.++
T Consensus 159 ~~a~~l~~~g~~~~A~~~y~~~~~~---~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~~~~~~~ 229 (694)
T PRK15179 159 LEAKSWDEIGQSEQADACFERLSRQ---HPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGARKLTRRL 229 (694)
T ss_pred HHHHHHHHhcchHHHHHHHHHHHhc---CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchHHHHHHH
Confidence 6666788999999999999999852 34 3678888999999999999999999988 3445555655554
No 132
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=97.99 E-value=1.2e-05 Score=50.76 Aligned_cols=34 Identities=41% Similarity=0.653 Sum_probs=31.2
Q ss_pred cchHHHHHHHHHhCCChhHHHHHHHHHHHCCCCC
Q 004487 139 SVSFNALITGFAKEGLNEEAIKLFVEMQHLGFKP 172 (749)
Q Consensus 139 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p 172 (749)
+.+||.+|.+|++.|+++.|.++|++|.+.|++|
T Consensus 1 v~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 1 VHTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred CcHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 3689999999999999999999999999999887
No 133
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=97.98 E-value=0.0001 Score=64.51 Aligned_cols=95 Identities=23% Similarity=0.351 Sum_probs=74.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHhHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCchhHHHHHHHHH
Q 004487 514 EHYASMVDILCRSGCFDEAEKLMAQM-PFEP-DEIMWSSVINSCRIHKNLEFAKKAADQLFKMEKLRDAAPYVAMSNIYA 591 (749)
Q Consensus 514 ~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 591 (749)
.....+...+...|++++|.+.++.. ...| +...|..+...+...|+++.|...++++++.+| .+...+..++.+|.
T Consensus 18 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p-~~~~~~~~la~~~~ 96 (135)
T TIGR02552 18 EQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDP-DDPRPYFHAAECLL 96 (135)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-CChHHHHHHHHHHH
Confidence 44556667777788888888887776 3344 466777777778888888888888888888888 88888888888888
Q ss_pred HcCCchhHHHHHHHHHhC
Q 004487 592 VAGQWESVSQVKKAMRER 609 (749)
Q Consensus 592 ~~g~~~~a~~~~~~m~~~ 609 (749)
..|++++|.+.++...+.
T Consensus 97 ~~g~~~~A~~~~~~al~~ 114 (135)
T TIGR02552 97 ALGEPESALKALDLAIEI 114 (135)
T ss_pred HcCCHHHHHHHHHHHHHh
Confidence 888888888888877664
No 134
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=97.95 E-value=1.6e-05 Score=50.06 Aligned_cols=33 Identities=42% Similarity=0.851 Sum_probs=27.1
Q ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 004487 443 VSWNALISACAQNGDAQATLKSFEDMVQSGYQP 475 (749)
Q Consensus 443 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 475 (749)
.+||++|.+|++.|+++.|.++|++|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 578888888888888888888888888888777
No 135
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=97.94 E-value=0.0028 Score=71.34 Aligned_cols=232 Identities=9% Similarity=0.129 Sum_probs=113.8
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHHhcCC--CCccc-HHHHHHHHHhCCChhHHHHHHHHHHHCCCCcCHHhHHHHHHH
Q 004487 309 EVKVANSLVDMYAKCGRFEEAKEIFANLSH--ISTVP-WTAMISAYVQKGNLEEALNLFIEMCRANISADQATFASILRA 385 (749)
Q Consensus 309 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~-~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~ 385 (749)
+...+..|+..|...+++++|.++.+...+ |+... |-.+...+.+.++..++..+ . ++..
T Consensus 30 n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~---------------~l~~ 92 (906)
T PRK14720 30 KFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL--N---------------LIDS 92 (906)
T ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh--h---------------hhhh
Confidence 345556666667677777777776665432 22222 22222244555554444333 1 2222
Q ss_pred hcccCcHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCC---CCcchHHHHHHHHHhcCCHHHHH
Q 004487 386 SAELASLSLGKQLHSFVIRSGFMSNVFSGSALLDMYAKSGSLKDAIQTFKEMPE---RNIVSWNALISACAQNGDAQATL 462 (749)
Q Consensus 386 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~ 462 (749)
.....+......++..+.+.+ .+...+..|..+|-+.|+.++|..+++++.+ .|+...|.+.-.|+.. +.++|+
T Consensus 93 ~~~~~~~~~ve~~~~~i~~~~--~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~-dL~KA~ 169 (906)
T PRK14720 93 FSQNLKWAIVEHICDKILLYG--ENKLALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE-DKEKAI 169 (906)
T ss_pred cccccchhHHHHHHHHHHhhh--hhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh-hHHHHH
Confidence 222222222223333333321 2233445556666666666666666665552 3445555555555555 666666
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHHHcCCHHHHHHHHHhCCC
Q 004487 463 KSFEDMVQSGYQPDSVSLLSVLSACSHCGLIEEGLQYFNSMTQKYKLRPK-KEHYASMVDILCRSGCFDEAEKLMAQMPF 541 (749)
Q Consensus 463 ~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 541 (749)
+++.+.... +....++..+.++|..+.. ..|+ ...+--+..... ...+.
T Consensus 170 ~m~~KAV~~---------------~i~~kq~~~~~e~W~k~~~---~~~~d~d~f~~i~~ki~------------~~~~~ 219 (906)
T PRK14720 170 TYLKKAIYR---------------FIKKKQYVGIEEIWSKLVH---YNSDDFDFFLRIERKVL------------GHREF 219 (906)
T ss_pred HHHHHHHHH---------------HHhhhcchHHHHHHHHHHh---cCcccchHHHHHHHHHH------------hhhcc
Confidence 666555442 3334455555555555552 1222 111111111111 11111
Q ss_pred CCCHHhHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCchhHHHHHHHHH
Q 004487 542 EPDEIMWSSVINSCRIHKNLEFAKKAADQLFKMEKLRDAAPYVAMSNIYA 591 (749)
Q Consensus 542 ~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 591 (749)
.--..+|--|-.-|...++++++..+++.+++.+| .|..+..-++..|.
T Consensus 220 ~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~-~n~~a~~~l~~~y~ 268 (906)
T PRK14720 220 TRLVGLLEDLYEPYKALEDWDEVIYILKKILEHDN-KNNKAREELIRFYK 268 (906)
T ss_pred chhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCC-cchhhHHHHHHHHH
Confidence 22233444455556667777777777777777777 66666666666665
No 136
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=97.87 E-value=0.00048 Score=70.68 Aligned_cols=128 Identities=16% Similarity=0.177 Sum_probs=100.1
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHhhCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhcc
Q 004487 412 FSGSALLDMYAKSGSLKDAIQTFKEMPERNIVSWNALISACAQNGDAQATLKSFEDMVQSGYQP-DSVSLLSVLSACSHC 490 (749)
Q Consensus 412 ~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~ 490 (749)
....+|+..+...++++.|.++|+++.+.++..+..|+..+...++..+|++++++.... .| |...+..-...|...
T Consensus 170 yLv~~Ll~~l~~t~~~~~ai~lle~L~~~~pev~~~LA~v~l~~~~E~~AI~ll~~aL~~--~p~d~~LL~~Qa~fLl~k 247 (395)
T PF09295_consen 170 YLVDTLLKYLSLTQRYDEAIELLEKLRERDPEVAVLLARVYLLMNEEVEAIRLLNEALKE--NPQDSELLNLQAEFLLSK 247 (395)
T ss_pred HHHHHHHHHHhhcccHHHHHHHHHHHHhcCCcHHHHHHHHHHhcCcHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhc
Confidence 334456667777888999999999988777777777888888888888999999888863 34 444555555568888
Q ss_pred CCHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCC
Q 004487 491 GLIEEGLQYFNSMTQKYKLRPK-KEHYASMVDILCRSGCFDEAEKLMAQMPFEPD 544 (749)
Q Consensus 491 g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~ 544 (749)
++.+.|+++.+++.. +.|+ ..+|..|+..|...|++++|+-.++.+|+.|.
T Consensus 248 ~~~~lAL~iAk~av~---lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm~~~ 299 (395)
T PF09295_consen 248 KKYELALEIAKKAVE---LSPSEFETWYQLAECYIQLGDFENALLALNSCPMLTY 299 (395)
T ss_pred CCHHHHHHHHHHHHH---hCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCcCCCC
Confidence 999999999988874 4665 45888999999999999999999998876543
No 137
>PLN02789 farnesyltranstransferase
Probab=97.83 E-value=0.001 Score=66.90 Aligned_cols=187 Identities=12% Similarity=0.123 Sum_probs=132.4
Q ss_pred HHHHHHHhcCCHHHHHHHHhhCCC---CCcchHHHHHHHHHhcC-CHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHhcc
Q 004487 416 ALLDMYAKSGSLKDAIQTFKEMPE---RNIVSWNALISACAQNG-DAQATLKSFEDMVQSGYQPDS-VSLLSVLSACSHC 490 (749)
Q Consensus 416 ~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~ 490 (749)
.+-..+.+.+..++|....+++.+ .+...|+..-..+...| ++++++..++++.+. .|+. .+|......+.+.
T Consensus 42 ~~ra~l~~~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~--npknyqaW~~R~~~l~~l 119 (320)
T PLN02789 42 YFRAVYASDERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAED--NPKNYQIWHHRRWLAEKL 119 (320)
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHH--CCcchHHhHHHHHHHHHc
Confidence 334445566778888888887764 23456666655666666 679999999999984 4443 3565554445555
Q ss_pred CC--HHHHHHHHHHhHHhcCCCC-ChHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHhHHHHHHHHHhc---CC--
Q 004487 491 GL--IEEGLQYFNSMTQKYKLRP-KKEHYASMVDILCRSGCFDEAEKLMAQM-PFEP-DEIMWSSVINSCRIH---KN-- 560 (749)
Q Consensus 491 g~--~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~---g~-- 560 (749)
|. .++++.+++.+.+ +.| +...|+...-++.+.|++++|++.++++ ...| |..+|+......... |.
T Consensus 120 ~~~~~~~el~~~~kal~---~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~~~l~~~~ 196 (320)
T PLN02789 120 GPDAANKELEFTRKILS---LDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSAWNQRYFVITRSPLLGGLE 196 (320)
T ss_pred CchhhHHHHHHHHHHHH---hCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhHHHHHHHHHHhcccccccc
Confidence 65 3678888888874 345 5667887888888899999999999998 4444 577888776665443 22
Q ss_pred --HHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHc----CCchhHHHHHHHHHh
Q 004487 561 --LEFAKKAADQLFKMEKLRDAAPYVAMSNIYAVA----GQWESVSQVKKAMRE 608 (749)
Q Consensus 561 --~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----g~~~~a~~~~~~m~~ 608 (749)
.+.+.....++++..| .|..+|..+..++... ++..+|.++.....+
T Consensus 197 ~~~e~el~y~~~aI~~~P-~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~ 249 (320)
T PLN02789 197 AMRDSELKYTIDAILANP-RNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLS 249 (320)
T ss_pred ccHHHHHHHHHHHHHhCC-CCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhc
Confidence 3567788889999999 9999999999999873 445567666665433
No 138
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=97.80 E-value=0.00065 Score=59.44 Aligned_cols=113 Identities=13% Similarity=0.148 Sum_probs=85.1
Q ss_pred HHHHHHHCCCCCCHH-HHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHhC-CC
Q 004487 464 SFEDMVQSGYQPDSV-SLLSVLSACSHCGLIEEGLQYFNSMTQKYKLRPKKEHYASMVDILCRSGCFDEAEKLMAQM-PF 541 (749)
Q Consensus 464 ~~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~ 541 (749)
.+++... ..|+.. ....+...+...|++++|.+.|+.+... -+.+...+..+...+.+.|++++|.+.+++. ..
T Consensus 5 ~~~~~l~--~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 80 (135)
T TIGR02552 5 TLKDLLG--LDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAY--DPYNSRYWLGLAACCQMLKEYEEAIDAYALAAAL 80 (135)
T ss_pred hHHHHHc--CChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4555555 455543 4556666788889999999998887753 2335677788888888999999999888877 44
Q ss_pred CC-CHHhHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCch
Q 004487 542 EP-DEIMWSSVINSCRIHKNLEFAKKAADQLFKMEKLRDAA 581 (749)
Q Consensus 542 ~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 581 (749)
.| +...|..+...+...|+.+.|...++++++..| .+..
T Consensus 81 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~ 120 (135)
T TIGR02552 81 DPDDPRPYFHAAECLLALGEPESALKALDLAIEICG-ENPE 120 (135)
T ss_pred CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcc-ccch
Confidence 45 467777778888999999999999999999998 5544
No 139
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.77 E-value=0.013 Score=54.80 Aligned_cols=115 Identities=9% Similarity=0.098 Sum_probs=77.0
Q ss_pred ccCCHHHHHHHHHHhHHhcCCCCChHHHH----HHHHHHHHcCCHHHHHHHHHhC--CCCCCHHhHHHHHHHHHhcCCHH
Q 004487 489 HCGLIEEGLQYFNSMTQKYKLRPKKEHYA----SMVDILCRSGCFDEAEKLMAQM--PFEPDEIMWSSVINSCRIHKNLE 562 (749)
Q Consensus 489 ~~g~~~~a~~~~~~m~~~~~~~p~~~~~~----~li~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~ll~~~~~~g~~~ 562 (749)
+..+.+-|.+.++.|.+ +. +..+.+ ++|....-.+.+.+|.-+|++| ...|+..+.+.....|...|+++
T Consensus 149 k~~r~d~A~~~lk~mq~---id-ed~tLtQLA~awv~la~ggek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~e 224 (299)
T KOG3081|consen 149 KMHRFDLAEKELKKMQQ---ID-EDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYE 224 (299)
T ss_pred HHHHHHHHHHHHHHHHc---cc-hHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHH
Confidence 34455555555555542 11 222222 3333333445677777777777 35677788888888888899999
Q ss_pred HHHHHHHHHhcCCCCCCchhHHHHHHHHHHcCCchhH-HHHHHHHHh
Q 004487 563 FAKKAADQLFKMEKLRDAAPYVAMSNIYAVAGQWESV-SQVKKAMRE 608 (749)
Q Consensus 563 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a-~~~~~~m~~ 608 (749)
+|+.+++.++..++ .++.+...++-+-...|+-.++ .+.+.+++.
T Consensus 225 eAe~lL~eaL~kd~-~dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk~ 270 (299)
T KOG3081|consen 225 EAESLLEEALDKDA-KDPETLANLIVLALHLGKDAEVTERNLSQLKL 270 (299)
T ss_pred HHHHHHHHHHhccC-CCHHHHHHHHHHHHHhCCChHHHHHHHHHHHh
Confidence 99999999999998 8888888888877788876554 455555543
No 140
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.73 E-value=4.1e-05 Score=46.98 Aligned_cols=31 Identities=45% Similarity=0.800 Sum_probs=27.1
Q ss_pred chHHHHHHHHHhCCChhHHHHHHHHHHHCCC
Q 004487 140 VSFNALITGFAKEGLNEEAIKLFVEMQHLGF 170 (749)
Q Consensus 140 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~ 170 (749)
++||+||++|++.|++++|.++|++|.+.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 4799999999999999999999999988764
No 141
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=97.72 E-value=0.12 Score=56.82 Aligned_cols=160 Identities=10% Similarity=0.053 Sum_probs=90.2
Q ss_pred hHHHHHHHHHhcCCHH---HHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHH
Q 004487 444 SWNALISACAQNGDAQ---ATLKSFEDMVQSGYQPDSVSLLSVLSACSHCGLIEEGLQYFNSMTQKYKLRPKKEHYASMV 520 (749)
Q Consensus 444 ~~~~li~~~~~~g~~~---~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li 520 (749)
+-|.|+..+.+.++.. +|+-+++.-... -+-|..+-..++..|+-.|-...|.+++..+.-+ .|..|.--|- +.
T Consensus 438 av~~Lid~~rktnd~~~l~eaI~LLE~glt~-s~hnf~~KLlLiriY~~lGa~p~a~~~y~tLdIK-~IQ~DTlgh~-~~ 514 (932)
T KOG2053|consen 438 AVNHLIDLWRKTNDLTDLFEAITLLENGLTK-SPHNFQTKLLLIRIYSYLGAFPDAYELYKTLDIK-NIQTDTLGHL-IF 514 (932)
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHHHhhc-CCccHHHHHHHHHHHHHhcCChhHHHHHHhcchH-HhhhccchHH-HH
Confidence 4567888888888765 455555555542 2335557778889999999999999999988765 5666543332 23
Q ss_pred HHHHHcCCHHHHHHHHHhC-CC-CCC-HHhHHHHHHHHHhcCCHHHHHHHHHHHhcCCC---CCCchhHHHHHHHHHHcC
Q 004487 521 DILCRSGCFDEAEKLMAQM-PF-EPD-EIMWSSVINSCRIHKNLEFAKKAADQLFKMEK---LRDAAPYVAMSNIYAVAG 594 (749)
Q Consensus 521 ~~~~~~g~~~~A~~~~~~~-~~-~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~g 594 (749)
..+...|++..|...++.. .+ ..+ ..+-. +|..-.++|.+..-.++..-=-.+.. ..-..+=..........+
T Consensus 515 ~~~~t~g~~~~~s~~~~~~lkfy~~~~kE~~e-yI~~AYr~g~ySkI~em~~fr~rL~~S~q~~a~~VE~~~l~ll~~~~ 593 (932)
T KOG2053|consen 515 RRAETSGRSSFASNTFNEHLKFYDSSLKETPE-YIALAYRRGAYSKIPEMLAFRDRLMHSLQKWACRVENLQLSLLCNAD 593 (932)
T ss_pred HHHHhcccchhHHHHHHHHHHHHhhhhhhhHH-HHHHHHHcCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 4455566766666555443 00 000 01111 22222345655555444322112211 011222234556667778
Q ss_pred CchhHHHHHHHHH
Q 004487 595 QWESVSQVKKAMR 607 (749)
Q Consensus 595 ~~~~a~~~~~~m~ 607 (749)
+.+.-.+.++.|+
T Consensus 594 ~~~q~~~~~~~~~ 606 (932)
T KOG2053|consen 594 RGTQLLKLLESMK 606 (932)
T ss_pred cHHHHHHHHhccc
Confidence 8877777777775
No 142
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.72 E-value=0.0026 Score=58.92 Aligned_cols=181 Identities=14% Similarity=0.186 Sum_probs=119.0
Q ss_pred cCCHHHHHHHHhhCCC--------CCcc-hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH-HHhccCCH
Q 004487 424 SGSLKDAIQTFKEMPE--------RNIV-SWNALISACAQNGDAQATLKSFEDMVQSGYQPDSVSLLSVLS-ACSHCGLI 493 (749)
Q Consensus 424 ~g~~~~A~~~~~~~~~--------~~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~-a~~~~g~~ 493 (749)
..+.++..+++.++.. ++.. .|..++-+....|+.+.|...++++... + |...-...+-. -+...|.+
T Consensus 25 ~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~-f-p~S~RV~~lkam~lEa~~~~ 102 (289)
T KOG3060|consen 25 VRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDR-F-PGSKRVGKLKAMLLEATGNY 102 (289)
T ss_pred ccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHh-C-CCChhHHHHHHHHHHHhhch
Confidence 3567777777776651 2221 3334455556677888888888887774 3 55432222211 24557888
Q ss_pred HHHHHHHHHhHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHhC--CCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHH
Q 004487 494 EEGLQYFNSMTQKYKLRPKKEHYASMVDILCRSGCFDEAEKLMAQM--PFEPDEIMWSSVINSCRIHKNLEFAKKAADQL 571 (749)
Q Consensus 494 ~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 571 (749)
++|.++++.+.++ -+.|..++--=+-++-..|+--+|++-+... .+..|...|.-|...|...|+++.|.-.++++
T Consensus 103 ~~A~e~y~~lL~d--dpt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ 180 (289)
T KOG3060|consen 103 KEAIEYYESLLED--DPTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEEL 180 (289)
T ss_pred hhHHHHHHHHhcc--CcchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHH
Confidence 8888888888764 1334455555556666677766777666555 45567888888888888888888888888888
Q ss_pred hcCCCCCCchhHHHHHHHHHHcC---CchhHHHHHHHHHhC
Q 004487 572 FKMEKLRDAAPYVAMSNIYAVAG---QWESVSQVKKAMRER 609 (749)
Q Consensus 572 ~~~~~~~~~~~~~~l~~~~~~~g---~~~~a~~~~~~m~~~ 609 (749)
+-..| .++..+-.++..+...| +.+-+.+++.+..+.
T Consensus 181 ll~~P-~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl 220 (289)
T KOG3060|consen 181 LLIQP-FNPLYFQRLAEVLYTQGGAENLELARKYYERALKL 220 (289)
T ss_pred HHcCC-CcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHh
Confidence 88888 88888888888776666 344455555555443
No 143
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=97.71 E-value=0.0013 Score=58.23 Aligned_cols=52 Identities=13% Similarity=0.142 Sum_probs=25.2
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHcCCchhHHHHHH
Q 004487 551 VINSCRIHKNLEFAKKAADQLFKMEKLRDAAPYVAMSNIYAVAGQWESVSQVKK 604 (749)
Q Consensus 551 ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 604 (749)
|...+...|++++|+..++.. .-.+ ..+..+..++++|.+.|++++|...++
T Consensus 91 LA~~~~~~~~~d~Al~~L~~~-~~~~-~~~~~~~~~Gdi~~~~g~~~~A~~~y~ 142 (145)
T PF09976_consen 91 LARILLQQGQYDEALATLQQI-PDEA-FKALAAELLGDIYLAQGDYDEARAAYQ 142 (145)
T ss_pred HHHHHHHcCCHHHHHHHHHhc-cCcc-hHHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 334444555555555555442 1122 334445555555555555555555554
No 144
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.70 E-value=5.1e-05 Score=46.53 Aligned_cols=31 Identities=32% Similarity=0.621 Sum_probs=25.7
Q ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 004487 443 VSWNALISACAQNGDAQATLKSFEDMVQSGY 473 (749)
Q Consensus 443 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 473 (749)
++||+||++|++.|++++|.++|++|.+.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 4788888888888888888888888888764
No 145
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.67 E-value=0.0091 Score=55.42 Aligned_cols=163 Identities=15% Similarity=0.241 Sum_probs=113.5
Q ss_pred HHHhcCCHHHHHHHHhhCCCCCcchHHHH---HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHH
Q 004487 420 MYAKSGSLKDAIQTFKEMPERNIVSWNAL---ISACAQNGDAQATLKSFEDMVQSGYQPDSVSLLSVLSACSHCGLIEEG 496 (749)
Q Consensus 420 ~y~~~g~~~~A~~~~~~~~~~~~~~~~~l---i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a 496 (749)
+..-+|+.+.|..+++.+...=+.++... ..-+-..|++++|+++++...+.. +.|.+++..=+...-..|.--+|
T Consensus 61 AAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~a 139 (289)
T KOG3060|consen 61 AALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEA 139 (289)
T ss_pred HHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhhHHHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHH
Confidence 34455677777777766553212222211 112345788999999999998865 55666777666666677777788
Q ss_pred HHHHHHhHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHhHHHHHHHHHh---cCCHHHHHHHHHHH
Q 004487 497 LQYFNSMTQKYKLRPKKEHYASMVDILCRSGCFDEAEKLMAQM-PFEP-DEIMWSSVINSCRI---HKNLEFAKKAADQL 571 (749)
Q Consensus 497 ~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~---~g~~~~a~~~~~~~ 571 (749)
++-+....+. +..|.+.|.-+.++|...|++++|.--++++ -..| ++..+..+...+.- ..|++.+.+.|.+.
T Consensus 140 Ik~ln~YL~~--F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~a 217 (289)
T KOG3060|consen 140 IKELNEYLDK--FMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLELARKYYERA 217 (289)
T ss_pred HHHHHHHHHH--hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 8888888764 5678899999999999999999999999888 3445 34455555555433 33789999999999
Q ss_pred hcCCCCCCchhHHHH
Q 004487 572 FKMEKLRDAAPYVAM 586 (749)
Q Consensus 572 ~~~~~~~~~~~~~~l 586 (749)
+++.| .+...+.-+
T Consensus 218 lkl~~-~~~ral~GI 231 (289)
T KOG3060|consen 218 LKLNP-KNLRALFGI 231 (289)
T ss_pred HHhCh-HhHHHHHHH
Confidence 99988 665554433
No 146
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.64 E-value=0.007 Score=56.62 Aligned_cols=148 Identities=16% Similarity=0.124 Sum_probs=111.3
Q ss_pred cCCHHH-HHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHHcCCHHHHH
Q 004487 455 NGDAQA-TLKSFEDMVQSGYQPDSVSLLSVLSACSHCGLIEEGLQYFNSMTQKYKLRPKKEHYASMVDILCRSGCFDEAE 533 (749)
Q Consensus 455 ~g~~~~-A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~ 533 (749)
-++-+. --++.+.+.......|......-...|.+.|+.++|++.... .-+.+....=+..+.|..+++-|.
T Consensus 85 e~~~~~~~~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~-------~~~lE~~Al~VqI~lk~~r~d~A~ 157 (299)
T KOG3081|consen 85 ESNKKSILASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHL-------GENLEAAALNVQILLKMHRFDLAE 157 (299)
T ss_pred cchhHHHHHHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhc-------cchHHHHHHHHHHHHHHHHHHHHH
Confidence 344333 344556666655555545444455569999999999998854 234555656677888999999999
Q ss_pred HHHHhCCCCCCHHhHHHHHHHHH----hcCCHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHcCCchhHHHHHHHHHhC
Q 004487 534 KLMAQMPFEPDEIMWSSVINSCR----IHKNLEFAKKAADQLFKMEKLRDAAPYVAMSNIYAVAGQWESVSQVKKAMRER 609 (749)
Q Consensus 534 ~~~~~~~~~p~~~~~~~ll~~~~----~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 609 (749)
+.+++|..-.+..+.+.|..++. -.+.+..|.-+|+++-+.-| +.+.+.+..+.++...|+|++|..+++...++
T Consensus 158 ~~lk~mq~ided~tLtQLA~awv~la~ggek~qdAfyifeE~s~k~~-~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~k 236 (299)
T KOG3081|consen 158 KELKKMQQIDEDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEKTP-PTPLLLNGQAVCHLQLGRYEEAESLLEEALDK 236 (299)
T ss_pred HHHHHHHccchHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcccC-CChHHHccHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 99999954445666666666653 23468999999999999888 89999999999999999999999999998776
Q ss_pred C
Q 004487 610 G 610 (749)
Q Consensus 610 g 610 (749)
.
T Consensus 237 d 237 (299)
T KOG3081|consen 237 D 237 (299)
T ss_pred c
Confidence 3
No 147
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.62 E-value=0.00055 Score=55.16 Aligned_cols=92 Identities=15% Similarity=0.257 Sum_probs=69.5
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHhC-CCCCC-HHhHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHc
Q 004487 516 YASMVDILCRSGCFDEAEKLMAQM-PFEPD-EIMWSSVINSCRIHKNLEFAKKAADQLFKMEKLRDAAPYVAMSNIYAVA 593 (749)
Q Consensus 516 ~~~li~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 593 (749)
+..+...+...|++++|.+.+++. ...|+ ...|..+...+...++++.|...+++..+..| .+...+..++.++...
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 81 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDP-DNAKAYYNLGLAYYKL 81 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-cchhHHHHHHHHHHHH
Confidence 344566677778888888887776 33343 45666677777788888888888888888888 7777888888888888
Q ss_pred CCchhHHHHHHHHHh
Q 004487 594 GQWESVSQVKKAMRE 608 (749)
Q Consensus 594 g~~~~a~~~~~~m~~ 608 (749)
|++++|...+....+
T Consensus 82 ~~~~~a~~~~~~~~~ 96 (100)
T cd00189 82 GKYEEALEAYEKALE 96 (100)
T ss_pred HhHHHHHHHHHHHHc
Confidence 888888888877654
No 148
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=97.62 E-value=0.0032 Score=55.76 Aligned_cols=123 Identities=19% Similarity=0.209 Sum_probs=77.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCh--HHHHH
Q 004487 445 WNALISACAQNGDAQATLKSFEDMVQSGYQPDS----VSLLSVLSACSHCGLIEEGLQYFNSMTQKYKLRPKK--EHYAS 518 (749)
Q Consensus 445 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~----~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~--~~~~~ 518 (749)
|..++..+ ..++...+.+.++.+.... |+. .....+...+...|++++|...|+..... .-.|.. ...-.
T Consensus 15 y~~~~~~~-~~~~~~~~~~~~~~l~~~~--~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~-~~d~~l~~~a~l~ 90 (145)
T PF09976_consen 15 YEQALQAL-QAGDPAKAEAAAEQLAKDY--PSSPYAALAALQLAKAAYEQGDYDEAKAALEKALAN-APDPELKPLARLR 90 (145)
T ss_pred HHHHHHHH-HCCCHHHHHHHHHHHHHHC--CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh-CCCHHHHHHHHHH
Confidence 33444444 3677777777777777742 332 23333445677778888888888877754 222221 22334
Q ss_pred HHHHHHHcCCHHHHHHHHHhCCCC-CCHHhHHHHHHHHHhcCCHHHHHHHHHHH
Q 004487 519 MVDILCRSGCFDEAEKLMAQMPFE-PDEIMWSSVINSCRIHKNLEFAKKAADQL 571 (749)
Q Consensus 519 li~~~~~~g~~~~A~~~~~~~~~~-p~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 571 (749)
|...+...|++++|+..++..+.. .....+..+...+...|+.++|...|+++
T Consensus 91 LA~~~~~~~~~d~Al~~L~~~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 91 LARILLQQGQYDEALATLQQIPDEAFKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHHHHHHcCCHHHHHHHHHhccCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 567777888888888888775322 23455666667788888888888888765
No 149
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=97.58 E-value=0.045 Score=62.00 Aligned_cols=168 Identities=11% Similarity=0.079 Sum_probs=91.3
Q ss_pred CcchHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCcchHHHHHHHHHccCChHHHHHHHHHHHHhcCCcchhHHHHHHH
Q 004487 239 DGVSYNVMITCYAWNEQYKESLKLFRELQFTRFDRSQFPFSTLLSVVANKLDLQIGRQIHTQTIVTTAISEVKVANSLVD 318 (749)
Q Consensus 239 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~ 318 (749)
+...|..|+..|...+++++|.++.+..... .|+...+-..+ ..
T Consensus 30 n~~a~~~Li~~~~~~~~~deai~i~~~~l~~--~P~~i~~yy~~----------------------------------G~ 73 (906)
T PRK14720 30 KFKELDDLIDAYKSENLTDEAKDICEEHLKE--HKKSISALYIS----------------------------------GI 73 (906)
T ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CCcceehHHHH----------------------------------HH
Confidence 4557888888888888899988888865543 45444332111 11
Q ss_pred HHHhcCCHHHHHHHHHhcCCCCcccHHHHHHHHHhCCChhHHHHHHHHHHHCCCCcCHHhHHHHHHHhcccCcHHHHHHH
Q 004487 319 MYAKCGRFEEAKEIFANLSHISTVPWTAMISAYVQKGNLEEALNLFIEMCRANISADQATFASILRASAELASLSLGKQL 398 (749)
Q Consensus 319 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~ 398 (749)
.|.+.++.+++..+ .++.......++.-...+...|... .-+...+..+..+|.+.|..+++..+
T Consensus 74 l~~q~~~~~~~~lv-------------~~l~~~~~~~~~~~ve~~~~~i~~~--~~~k~Al~~LA~~Ydk~g~~~ka~~~ 138 (906)
T PRK14720 74 LSLSRRPLNDSNLL-------------NLIDSFSQNLKWAIVEHICDKILLY--GENKLALRTLAEAYAKLNENKKLKGV 138 (906)
T ss_pred HHHhhcchhhhhhh-------------hhhhhcccccchhHHHHHHHHHHhh--hhhhHHHHHHHHHHHHcCChHHHHHH
Confidence 23333333333222 1222222222232222222223221 12233445555556666666666666
Q ss_pred HHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004487 399 HSFVIRSGFMSNVFSGSALLDMYAKSGSLKDAIQTFKEMPERNIVSWNALISACAQNGDAQATLKSFEDMVQ 470 (749)
Q Consensus 399 ~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 470 (749)
++.+++.. +.++.+.|.+...|+.. ++++|.+++.+. +..|...+++.++.++|.++..
T Consensus 139 yer~L~~D-~~n~~aLNn~AY~~ae~-dL~KA~~m~~KA-----------V~~~i~~kq~~~~~e~W~k~~~ 197 (906)
T PRK14720 139 WERLVKAD-RDNPEIVKKLATSYEEE-DKEKAITYLKKA-----------IYRFIKKKQYVGIEEIWSKLVH 197 (906)
T ss_pred HHHHHhcC-cccHHHHHHHHHHHHHh-hHHHHHHHHHHH-----------HHHHHhhhcchHHHHHHHHHHh
Confidence 66666655 45666677777777777 777777766553 2235556677777777777766
No 150
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.58 E-value=0.00095 Score=68.85 Aligned_cols=82 Identities=12% Similarity=0.142 Sum_probs=38.8
Q ss_pred HcCCHHHHHHHHHhC-CCCC-CHHhHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHcCCchhHHHH
Q 004487 525 RSGCFDEAEKLMAQM-PFEP-DEIMWSSVINSCRIHKNLEFAKKAADQLFKMEKLRDAAPYVAMSNIYAVAGQWESVSQV 602 (749)
Q Consensus 525 ~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 602 (749)
..|++++|++.++++ ...| +...|..+..++...|++++|+..++++++++| .+...|..++.+|...|++++|...
T Consensus 14 ~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P-~~~~a~~~lg~~~~~lg~~~eA~~~ 92 (356)
T PLN03088 14 VDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDP-SLAKAYLRKGTACMKLEEYQTAKAA 92 (356)
T ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-CCHHHHHHHHHHHHHhCCHHHHHHH
Confidence 344444444444444 2223 233444444444445555555555555555555 4444555555555555555555555
Q ss_pred HHHHH
Q 004487 603 KKAMR 607 (749)
Q Consensus 603 ~~~m~ 607 (749)
++...
T Consensus 93 ~~~al 97 (356)
T PLN03088 93 LEKGA 97 (356)
T ss_pred HHHHH
Confidence 54443
No 151
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.56 E-value=9.1e-05 Score=58.43 Aligned_cols=77 Identities=12% Similarity=0.213 Sum_probs=40.9
Q ss_pred CCHHHHHHHHHhC-CCCC---CHHhHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHcCCchhHHHH
Q 004487 527 GCFDEAEKLMAQM-PFEP---DEIMWSSVINSCRIHKNLEFAKKAADQLFKMEKLRDAAPYVAMSNIYAVAGQWESVSQV 602 (749)
Q Consensus 527 g~~~~A~~~~~~~-~~~p---~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 602 (749)
|++++|+.+++++ ...| +...|-.+...+.+.|++++|..++++ .+.++ .+......++.+|...|++++|.++
T Consensus 3 ~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~-~~~~~~~l~a~~~~~l~~y~eAi~~ 80 (84)
T PF12895_consen 3 GNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDP-SNPDIHYLLARCLLKLGKYEEAIKA 80 (84)
T ss_dssp T-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHH-CHHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred ccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCC-CCHHHHHHHHHHHHHhCCHHHHHHH
Confidence 4445555555444 1112 333444455556666666666666666 55555 4445555556666666666666666
Q ss_pred HHH
Q 004487 603 KKA 605 (749)
Q Consensus 603 ~~~ 605 (749)
+++
T Consensus 81 l~~ 83 (84)
T PF12895_consen 81 LEK 83 (84)
T ss_dssp HHH
T ss_pred Hhc
Confidence 653
No 152
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.51 E-value=0.0013 Score=56.03 Aligned_cols=91 Identities=11% Similarity=0.057 Sum_probs=43.7
Q ss_pred HHHHHHHHcCCHHHHHHHHHhC-CCCCC----HHhHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCC---chhHHHHHHH
Q 004487 518 SMVDILCRSGCFDEAEKLMAQM-PFEPD----EIMWSSVINSCRIHKNLEFAKKAADQLFKMEKLRD---AAPYVAMSNI 589 (749)
Q Consensus 518 ~li~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~ 589 (749)
.++..+.+.|++++|.+.++++ ...|+ ...+..+...+...|+++.|...++++....| .+ ...+..++.+
T Consensus 7 ~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p-~~~~~~~~~~~~~~~ 85 (119)
T TIGR02795 7 DAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYP-KSPKAPDALLKLGMS 85 (119)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCC-CCCcccHHHHHHHHH
Confidence 3344444445555555544444 11121 22333344455555555555555555555544 21 3345555555
Q ss_pred HHHcCCchhHHHHHHHHHhC
Q 004487 590 YAVAGQWESVSQVKKAMRER 609 (749)
Q Consensus 590 ~~~~g~~~~a~~~~~~m~~~ 609 (749)
+...|++++|.+.++.+.+.
T Consensus 86 ~~~~~~~~~A~~~~~~~~~~ 105 (119)
T TIGR02795 86 LQELGDKEKAKATLQQVIKR 105 (119)
T ss_pred HHHhCChHHHHHHHHHHHHH
Confidence 55555555555555555443
No 153
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.51 E-value=0.0019 Score=54.84 Aligned_cols=101 Identities=16% Similarity=0.101 Sum_probs=55.4
Q ss_pred HHHHHHHhccCCHHHHHHHHHHhHHhcCCCC-ChHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC----HHhHHHHHHH
Q 004487 481 LSVLSACSHCGLIEEGLQYFNSMTQKYKLRP-KKEHYASMVDILCRSGCFDEAEKLMAQM-PFEPD----EIMWSSVINS 554 (749)
Q Consensus 481 ~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~ll~~ 554 (749)
..+...+...|++++|.+.|+.+...+.-.| ....+..+..++.+.|++++|.+.+++. ...|+ ..++..+...
T Consensus 6 ~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~ 85 (119)
T TIGR02795 6 YDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGMS 85 (119)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHHH
Confidence 3344445555555555555555554321111 1223444555666666666666666554 22222 3455566666
Q ss_pred HHhcCCHHHHHHHHHHHhcCCCCCCchh
Q 004487 555 CRIHKNLEFAKKAADQLFKMEKLRDAAP 582 (749)
Q Consensus 555 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 582 (749)
+...|+.+.|...++++++..| .+...
T Consensus 86 ~~~~~~~~~A~~~~~~~~~~~p-~~~~~ 112 (119)
T TIGR02795 86 LQELGDKEKAKATLQQVIKRYP-GSSAA 112 (119)
T ss_pred HHHhCChHHHHHHHHHHHHHCc-CChhH
Confidence 6777777777777777777777 55443
No 154
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.49 E-value=0.14 Score=51.48 Aligned_cols=106 Identities=20% Similarity=0.215 Sum_probs=65.2
Q ss_pred HHHHHHHhcCCHHHHHHHHhhCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHH
Q 004487 416 ALLDMYAKSGSLKDAIQTFKEMPERNIVSWNALISACAQNGDAQATLKSFEDMVQSGYQPDSVSLLSVLSACSHCGLIEE 495 (749)
Q Consensus 416 ~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~ 495 (749)
.-|.-+...|+...|.++-.+..-||..-|-..+.+++..+++++-.++... .- .++-|..++.+|...|...+
T Consensus 182 ~Ti~~li~~~~~k~A~kl~k~Fkv~dkrfw~lki~aLa~~~~w~eL~~fa~s----kK--sPIGyepFv~~~~~~~~~~e 255 (319)
T PF04840_consen 182 DTIRKLIEMGQEKQAEKLKKEFKVPDKRFWWLKIKALAENKDWDELEKFAKS----KK--SPIGYEPFVEACLKYGNKKE 255 (319)
T ss_pred HHHHHHHHCCCHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCCHHHHHHHHhC----CC--CCCChHHHHHHHHHCCCHHH
Confidence 3344455667777777777766667777777777777777777665554321 11 23556666777777777777
Q ss_pred HHHHHHHhHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHh
Q 004487 496 GLQYFNSMTQKYKLRPKKEHYASMVDILCRSGCFDEAEKLMAQ 538 (749)
Q Consensus 496 a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 538 (749)
|..+...+. +..-+.+|.++|++.+|.+.--+
T Consensus 256 A~~yI~k~~-----------~~~rv~~y~~~~~~~~A~~~A~~ 287 (319)
T PF04840_consen 256 ASKYIPKIP-----------DEERVEMYLKCGDYKEAAQEAFK 287 (319)
T ss_pred HHHHHHhCC-----------hHHHHHHHHHCCCHHHHHHHHHH
Confidence 776665421 13346667777777776665444
No 155
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.46 E-value=0.00031 Score=52.91 Aligned_cols=64 Identities=13% Similarity=0.185 Sum_probs=58.2
Q ss_pred CHHhHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHcC-CchhHHHHHHHHHh
Q 004487 544 DEIMWSSVINSCRIHKNLEFAKKAADQLFKMEKLRDAAPYVAMSNIYAVAG-QWESVSQVKKAMRE 608 (749)
Q Consensus 544 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~a~~~~~~m~~ 608 (749)
++.+|..+...+...|++++|+..|+++++.+| .++..|..++.+|...| ++++|.+.+++..+
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p-~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDP-NNAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHST-THHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 467888899999999999999999999999999 99999999999999999 79999999988754
No 156
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.45 E-value=0.00079 Score=64.06 Aligned_cols=109 Identities=12% Similarity=0.141 Sum_probs=81.8
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHHHcCCHHHHHHHHHh
Q 004487 460 ATLKSFEDMVQSGYQPDSVSLLSVLSACSHCGLIEEGLQYFNSMTQKYKLRPK-KEHYASMVDILCRSGCFDEAEKLMAQ 538 (749)
Q Consensus 460 ~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~ 538 (749)
+...+-++++..| .-..+.+++.+|+..|...+ .+.|+ ...|..-..+|.+.|.++.|.+-.+.
T Consensus 76 e~~~~AE~LK~eG------------N~~m~~~~Y~eAv~kY~~AI---~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~ 140 (304)
T KOG0553|consen 76 EDKALAESLKNEG------------NKLMKNKDYQEAVDKYTEAI---ELDPTNAVYYCNRAAAYSKLGEYEDAVKDCES 140 (304)
T ss_pred hHHHHHHHHHHHH------------HHHHHhhhHHHHHHHHHHHH---hcCCCcchHHHHHHHHHHHhcchHHHHHHHHH
Confidence 3455555555555 34667888999999888887 45664 44555667888999999988888877
Q ss_pred C-CCCCC-HHhHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCchhHH
Q 004487 539 M-PFEPD-EIMWSSVINSCRIHKNLEFAKKAADQLFKMEKLRDAAPYV 584 (749)
Q Consensus 539 ~-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 584 (749)
. .+.|. ..+|..|..+|...|++++|++.|+++++++| .+.....
T Consensus 141 Al~iDp~yskay~RLG~A~~~~gk~~~A~~aykKaLeldP-~Ne~~K~ 187 (304)
T KOG0553|consen 141 ALSIDPHYSKAYGRLGLAYLALGKYEEAIEAYKKALELDP-DNESYKS 187 (304)
T ss_pred HHhcChHHHHHHHHHHHHHHccCcHHHHHHHHHhhhccCC-CcHHHHH
Confidence 6 66665 67888888889999999999999999999998 6664333
No 157
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.38 E-value=0.0069 Score=65.34 Aligned_cols=43 Identities=9% Similarity=0.101 Sum_probs=28.0
Q ss_pred CCCcchHHHHHHHHHh--c---CCHHHHHHHHHHHHHCCCCCCHH-HHHHH
Q 004487 439 ERNIVSWNALISACAQ--N---GDAQATLKSFEDMVQSGYQPDSV-SLLSV 483 (749)
Q Consensus 439 ~~~~~~~~~li~~~~~--~---g~~~~A~~~~~~m~~~g~~p~~~-t~~~l 483 (749)
..+...|...+.+... . ++...|..+|++..+ ..||.. .+..+
T Consensus 334 ~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~--ldP~~a~a~A~l 382 (517)
T PRK10153 334 PHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILK--SEPDFTYAQAEK 382 (517)
T ss_pred CCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH--hCCCcHHHHHHH
Confidence 4566777777776433 2 236688899999888 677754 34433
No 158
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.38 E-value=0.0032 Score=60.07 Aligned_cols=96 Identities=19% Similarity=0.320 Sum_probs=79.9
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHHHcC
Q 004487 450 SACAQNGDAQATLKSFEDMVQSGYQP-DSVSLLSVLSACSHCGLIEEGLQYFNSMTQKYKLRPK-KEHYASMVDILCRSG 527 (749)
Q Consensus 450 ~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g 527 (749)
.-+.+.+++.+|+..|.+.++ +.| |.+-|..-..||++.|.++.|++-.+... .+.|. ...|..|..+|...|
T Consensus 89 N~~m~~~~Y~eAv~kY~~AI~--l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al---~iDp~yskay~RLG~A~~~~g 163 (304)
T KOG0553|consen 89 NKLMKNKDYQEAVDKYTEAIE--LDPTNAVYYCNRAAAYSKLGEYEDAVKDCESAL---SIDPHYSKAYGRLGLAYLALG 163 (304)
T ss_pred HHHHHhhhHHHHHHHHHHHHh--cCCCcchHHHHHHHHHHHhcchHHHHHHHHHHH---hcChHHHHHHHHHHHHHHccC
Confidence 446778999999999999999 666 45667777889999999999999887666 46675 468999999999999
Q ss_pred CHHHHHHHHHhC-CCCCCHHhHHH
Q 004487 528 CFDEAEKLMAQM-PFEPDEIMWSS 550 (749)
Q Consensus 528 ~~~~A~~~~~~~-~~~p~~~~~~~ 550 (749)
++++|.+.|++. .+.|+..+|.+
T Consensus 164 k~~~A~~aykKaLeldP~Ne~~K~ 187 (304)
T KOG0553|consen 164 KYEEAIEAYKKALELDPDNESYKS 187 (304)
T ss_pred cHHHHHHHHHhhhccCCCcHHHHH
Confidence 999999999988 88898666543
No 159
>PRK15331 chaperone protein SicA; Provisional
Probab=97.38 E-value=0.0023 Score=55.84 Aligned_cols=108 Identities=16% Similarity=0.199 Sum_probs=87.8
Q ss_pred HHHHHHcCCHHHHHHHHHhC-CCCC-CHHhHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHcCCch
Q 004487 520 VDILCRSGCFDEAEKLMAQM-PFEP-DEIMWSSVINSCRIHKNLEFAKKAADQLFKMEKLRDAAPYVAMSNIYAVAGQWE 597 (749)
Q Consensus 520 i~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 597 (749)
.--+...|++++|..+|+-+ -..| +..-|..|...|...++++.|+..|..+..+++ .|+.++...+.+|...|+.+
T Consensus 44 Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~-~dp~p~f~agqC~l~l~~~~ 122 (165)
T PRK15331 44 AYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLK-NDYRPVFFTGQCQLLMRKAA 122 (165)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc-CCCCccchHHHHHHHhCCHH
Confidence 34455789999999998877 2223 455688888889999999999999999999999 99999999999999999999
Q ss_pred hHHHHHHHHHhCCCccCCceeEEEeCCEEEEEEeCCCCCcChHHHHHHHHHHHHHHHH
Q 004487 598 SVSQVKKAMRERGVRKVTAYSWVELKSKVHVFTANDELHPQTNEIRRKIENLMQEMKK 655 (749)
Q Consensus 598 ~a~~~~~~m~~~g~~~~~~~s~~~~~~~~~~f~~~~~~~~~~~~~~~~l~~l~~~m~~ 655 (749)
.|...++...+ +|+..++..+...+++.+++
T Consensus 123 ~A~~~f~~a~~---------------------------~~~~~~l~~~A~~~L~~l~~ 153 (165)
T PRK15331 123 KARQCFELVNE---------------------------RTEDESLRAKALVYLEALKT 153 (165)
T ss_pred HHHHHHHHHHh---------------------------CcchHHHHHHHHHHHHHHHc
Confidence 99999998765 24455666677777766654
No 160
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=97.35 E-value=0.042 Score=57.71 Aligned_cols=196 Identities=19% Similarity=0.236 Sum_probs=102.6
Q ss_pred HHHHHHhcCCHHHHHHHHHhcCCCCcccHHHHHHHHHhCCChhHHHHHHHHHHHCCCCcCHHhHHHHHHHhcccCcHHHH
Q 004487 316 LVDMYAKCGRFEEAKEIFANLSHISTVPWTAMISAYVQKGNLEEALNLFIEMCRANISADQATFASILRASAELASLSLG 395 (749)
Q Consensus 316 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a 395 (749)
+.+.++-.|.+.+|.++|.+ +|....|+++|..|..-. ...-+...|+.++-
T Consensus 638 lA~~~Ay~gKF~EAAklFk~------------------~G~enRAlEmyTDlRMFD----------~aQE~~~~g~~~eK 689 (1081)
T KOG1538|consen 638 LADVFAYQGKFHEAAKLFKR------------------SGHENRALEMYTDLRMFD----------YAQEFLGSGDPKEK 689 (1081)
T ss_pred HHHHHHhhhhHHHHHHHHHH------------------cCchhhHHHHHHHHHHHH----------HHHHHhhcCChHHH
Confidence 34445667778888777754 566677777777664311 11122233333333
Q ss_pred HHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 004487 396 KQLHSFVIRSGFMSNVFSGSALLDMYAKSGSLKDAIQTFKEMPERNIVSWNALISACAQNGDAQATLKSFEDMVQSGYQP 475 (749)
Q Consensus 396 ~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 475 (749)
+.+...-.+. .-++.--.+-..++..+|+.++|..+ +..+|-.+-+.++-+++-. .
T Consensus 690 KmL~RKRA~W--Ar~~kePkaAAEmLiSaGe~~KAi~i------------------~~d~gW~d~lidI~rkld~----~ 745 (1081)
T KOG1538|consen 690 KMLIRKRADW--ARNIKEPKAAAEMLISAGEHVKAIEI------------------CGDHGWVDMLIDIARKLDK----A 745 (1081)
T ss_pred HHHHHHHHHH--hhhcCCcHHHHHHhhcccchhhhhhh------------------hhcccHHHHHHHHHhhcch----h
Confidence 3332211111 01111112345566667777776544 3344545555555444322 2
Q ss_pred CHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHhCC-CCCCHHh-------
Q 004487 476 DSVSLLSVLSACSHCGLIEEGLQYFNSMTQKYKLRPKKEHYASMVDILCRSGCFDEAEKLMAQMP-FEPDEIM------- 547 (749)
Q Consensus 476 ~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~-~~p~~~~------- 547 (749)
+..+...+..-+-+...+.-|-++|.+|-. ...++++....+++++|..+-++.| +.||+..
T Consensus 746 ere~l~~~a~ylk~l~~~gLAaeIF~k~gD----------~ksiVqlHve~~~W~eAFalAe~hPe~~~dVy~pyaqwLA 815 (1081)
T KOG1538|consen 746 EREPLLLCATYLKKLDSPGLAAEIFLKMGD----------LKSLVQLHVETQRWDEAFALAEKHPEFKDDVYMPYAQWLA 815 (1081)
T ss_pred hhhHHHHHHHHHhhccccchHHHHHHHhcc----------HHHHhhheeecccchHhHhhhhhCccccccccchHHHHhh
Confidence 333444444444555666777777776642 2457788888888888888888873 4455321
Q ss_pred ----HHHHHHHHHhcCCHHHHHHHHHHHhc
Q 004487 548 ----WSSVINSCRIHKNLEFAKKAADQLFK 573 (749)
Q Consensus 548 ----~~~ll~~~~~~g~~~~a~~~~~~~~~ 573 (749)
+.-.-.++.+.|+..+|.++++++..
T Consensus 816 E~DrFeEAqkAfhkAGr~~EA~~vLeQLtn 845 (1081)
T KOG1538|consen 816 ENDRFEEAQKAFHKAGRQREAVQVLEQLTN 845 (1081)
T ss_pred hhhhHHHHHHHHHHhcchHHHHHHHHHhhh
Confidence 11112344555666666666666543
No 161
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.33 E-value=0.00069 Score=50.27 Aligned_cols=58 Identities=12% Similarity=0.149 Sum_probs=47.1
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHcCCchhHHHHHHHHHhC
Q 004487 551 VINSCRIHKNLEFAKKAADQLFKMEKLRDAAPYVAMSNIYAVAGQWESVSQVKKAMRER 609 (749)
Q Consensus 551 ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 609 (749)
+...+...|++++|+..++++++..| .+...+..++.++...|++++|..+++.+.+.
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P-~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~ 60 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDP-DNPEAWYLLGRILYQQGRYDEALAYYERALEL 60 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCST-THHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 34566778888888888888888888 88888888888888888888888888887654
No 162
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.33 E-value=0.0065 Score=55.59 Aligned_cols=129 Identities=14% Similarity=0.225 Sum_probs=81.5
Q ss_pred cchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCC-ChHHHHH
Q 004487 442 IVSWNALISACAQNGDAQATLKSFEDMVQSGYQPD--SVSLLSVLSACSHCGLIEEGLQYFNSMTQKYKLRP-KKEHYAS 518 (749)
Q Consensus 442 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~ 518 (749)
...+..+...+...|++++|+..|++..+....++ ...+..+...+.+.|++++|...+++.... .| +...+..
T Consensus 35 a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~ 111 (172)
T PRK02603 35 AFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALEL---NPKQPSALNN 111 (172)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CcccHHHHHH
Confidence 34566666677777888888888888776433222 245666667777788888888877777642 34 3445555
Q ss_pred HHHHHHHcCCHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHcCC
Q 004487 519 MVDILCRSGCFDEAEKLMAQMPFEPDEIMWSSVINSCRIHKNLEFAKKAADQLFKMEKLRDAAPYVAMSNIYAVAGQ 595 (749)
Q Consensus 519 li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 595 (749)
+..++...|+...+..-++.. ...+++|.+.++++++.+| .+ |..+...+...|+
T Consensus 112 lg~~~~~~g~~~~a~~~~~~A------------------~~~~~~A~~~~~~a~~~~p-~~---~~~~~~~~~~~~~ 166 (172)
T PRK02603 112 IAVIYHKRGEKAEEAGDQDEA------------------EALFDKAAEYWKQAIRLAP-NN---YIEAQNWLKTTGR 166 (172)
T ss_pred HHHHHHHcCChHhHhhCHHHH------------------HHHHHHHHHHHHHHHhhCc-hh---HHHHHHHHHhcCc
Confidence 566666666655544332221 1226778888888888888 44 5556666655554
No 163
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=97.31 E-value=0.29 Score=50.90 Aligned_cols=211 Identities=11% Similarity=0.087 Sum_probs=142.1
Q ss_pred HHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcC---CHHHHHHHHhhCC----CCCcchHHHHHHHHHhcCCHHHHHHHH
Q 004487 393 SLGKQLHSFVIRSGFMSNVFSGSALLDMYAKSG---SLKDAIQTFKEMP----ERNIVSWNALISACAQNGDAQATLKSF 465 (749)
Q Consensus 393 ~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g---~~~~A~~~~~~~~----~~~~~~~~~li~~~~~~g~~~~A~~~~ 465 (749)
+++..+++..+..-...+..+|.++.+.=-..- ..+.....+++.. ..-..+|-.+++.-.+..-...|..+|
T Consensus 310 ~e~~~~yEr~I~~l~~~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF 389 (656)
T KOG1914|consen 310 DEAASIYERAIEGLLKENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIF 389 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHH
Confidence 445555555554433334445544443221111 1334444444443 223456777888777777789999999
Q ss_pred HHHHHCCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHhC---CC
Q 004487 466 EDMVQSGYQP-DSVSLLSVLSACSHCGLIEEGLQYFNSMTQKYKLRPKKEHYASMVDILCRSGCFDEAEKLMAQM---PF 541 (749)
Q Consensus 466 ~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~---~~ 541 (749)
.+..+.+..+ +.....+++.-+ ..++.+-|.++|+.=.+++|- ++.--.+.++-+.+.++-..|..+|++. ..
T Consensus 390 ~kaR~~~r~~hhVfVa~A~mEy~-cskD~~~AfrIFeLGLkkf~d--~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l 466 (656)
T KOG1914|consen 390 KKAREDKRTRHHVFVAAALMEYY-CSKDKETAFRIFELGLKKFGD--SPEYVLKYLDFLSHLNDDNNARALFERVLTSVL 466 (656)
T ss_pred HHHhhccCCcchhhHHHHHHHHH-hcCChhHHHHHHHHHHHhcCC--ChHHHHHHHHHHHHhCcchhHHHHHHHHHhccC
Confidence 9999998888 444666666644 467889999999887766543 3445567889999999999999999998 23
Q ss_pred CCC--HHhHHHHHHHHHhcCCHHHHHHHHHHHhcCCC--CC-CchhHHHHHHHHHHcCCchhHHHHHHHH
Q 004487 542 EPD--EIMWSSVINSCRIHKNLEFAKKAADQLFKMEK--LR-DAAPYVAMSNIYAVAGQWESVSQVKKAM 606 (749)
Q Consensus 542 ~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~--~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~m 606 (749)
.|| ..+|..++.--..-||+..+.++-++....-| .. ....-..+.+.|.-.+.+..-..-++.|
T Consensus 467 ~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~af~~~qe~~~~~~~~~v~RY~~~d~~~c~~~elk~l 536 (656)
T KOG1914|consen 467 SADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTAFPADQEYEGNETALFVDRYGILDLYPCSLDELKFL 536 (656)
T ss_pred ChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHhcchhhcCCCChHHHHHHHHhhcccccccHHHHHhh
Confidence 444 57999999998999999999999888776555 11 1234446677787777776665555554
No 164
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=97.28 E-value=0.45 Score=52.60 Aligned_cols=212 Identities=13% Similarity=0.088 Sum_probs=120.9
Q ss_pred cCCChHHHHHHHhcCCC--CCcchHHHHHHHH--HcCCChhHHHHHHHHhHhcCCCCCCcchHHHHHHhcCCCCChHHHH
Q 004487 18 KSGNLATARELFNSMVD--RTAVSWTILIGGY--SQKNQFREAFKLFVDMRTDGGSDPDYVTFATLLSGCSEPDTANELI 93 (749)
Q Consensus 18 ~~g~~~~A~~~f~~~~~--~~~~~~~~li~~~--~~~g~~~~a~~l~~~m~~~~g~~p~~~~~~~ll~~~~~~~~~~~a~ 93 (749)
..+++..|+...+++.. ||. .|...+.++ .+.|+.++|..+++..... +.. |..|..++-..+...+..+++.
T Consensus 21 d~~qfkkal~~~~kllkk~Pn~-~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~-~~~-D~~tLq~l~~~y~d~~~~d~~~ 97 (932)
T KOG2053|consen 21 DSSQFKKALAKLGKLLKKHPNA-LYAKVLKALSLFRLGKGDEALKLLEALYGL-KGT-DDLTLQFLQNVYRDLGKLDEAV 97 (932)
T ss_pred hhHHHHHHHHHHHHHHHHCCCc-HHHHHHHHHHHHHhcCchhHHHHHhhhccC-CCC-chHHHHHHHHHHHHHhhhhHHH
Confidence 45677777777777643 332 344555544 5788888888877776544 222 6677777778888888888888
Q ss_pred HHHHHHHHhCCCCchhHHHHHHHHhHcCCCh----hHHHHHHccCCCCCcchHHHHHHHHHhC-CChh---------HHH
Q 004487 94 QVHADIIKFGYNSILIICNSLVDSYCKIRCL----DLARRVFKEMPQKDSVSFNALITGFAKE-GLNE---------EAI 159 (749)
Q Consensus 94 ~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~----~~A~~~~~~m~~~~~~~~~~li~~~~~~-g~~~---------~A~ 159 (749)
.++++..... |+......+..+|++.+++ ..|.+++...|++--.-|+.+ +.+.+. ..++ -|.
T Consensus 98 ~~Ye~~~~~~--P~eell~~lFmayvR~~~yk~qQkaa~~LyK~~pk~~yyfWsV~-Slilqs~~~~~~~~~~i~l~LA~ 174 (932)
T KOG2053|consen 98 HLYERANQKY--PSEELLYHLFMAYVREKSYKKQQKAALQLYKNFPKRAYYFWSVI-SLILQSIFSENELLDPILLALAE 174 (932)
T ss_pred HHHHHHHhhC--CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccchHHHHH-HHHHHhccCCcccccchhHHHHH
Confidence 8888877664 4466666677777776655 456777777666555556543 333222 1221 233
Q ss_pred HHHHHHHHCC-CCCChhhHHHHHHHHhCCCChHHHHHHHHHHHHcC-CCCChhHHHHHHHHHHcCCChHHHHHHHccC
Q 004487 160 KLFVEMQHLG-FKPSDFTFAAALSAGVGLADIALGRQVHAFVVKTN-FVENVFVANALLDLYSKHDCVVEARKLFGEM 235 (749)
Q Consensus 160 ~l~~~m~~~g-~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g-~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~ 235 (749)
+.++.+.+.+ ---+..-...-+..+...+.+++|..++..-.... ..-+...-+.-++++.+++++.+..++-.++
T Consensus 175 ~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~L 252 (932)
T KOG2053|consen 175 KMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRL 252 (932)
T ss_pred HHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHH
Confidence 4444444433 11111112222223345566777777764333222 2334444455667777777766655544443
No 165
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.25 E-value=0.0028 Score=57.76 Aligned_cols=93 Identities=13% Similarity=-0.075 Sum_probs=72.4
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC----HHhHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCchhHHHHH
Q 004487 513 KEHYASMVDILCRSGCFDEAEKLMAQM-PFEPD----EIMWSSVINSCRIHKNLEFAKKAADQLFKMEKLRDAAPYVAMS 587 (749)
Q Consensus 513 ~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 587 (749)
...|..++..+...|++++|...+++. ...|+ ..+|..+...+...|+.++|+..+++++++.| ....++..++
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~-~~~~~~~~la 113 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNP-FLPQALNNMA 113 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-CcHHHHHHHH
Confidence 445566667777788888888888776 23232 35788888889999999999999999999998 8888888888
Q ss_pred HHHH-------HcCCchhHHHHHHHH
Q 004487 588 NIYA-------VAGQWESVSQVKKAM 606 (749)
Q Consensus 588 ~~~~-------~~g~~~~a~~~~~~m 606 (749)
.+|. ..|++++|...+++.
T Consensus 114 ~i~~~~~~~~~~~g~~~~A~~~~~~a 139 (168)
T CHL00033 114 VICHYRGEQAIEQGDSEIAEAWFDQA 139 (168)
T ss_pred HHHHHhhHHHHHcccHHHHHHHHHHH
Confidence 8888 778888666665544
No 166
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.23 E-value=0.0097 Score=59.16 Aligned_cols=143 Identities=13% Similarity=0.170 Sum_probs=103.9
Q ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH-HhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHH
Q 004487 443 VSWNALISACAQNGDAQATLKSFEDMVQSGYQPDSVSLLSVLSA-CSHCGLIEEGLQYFNSMTQKYKLRPKKEHYASMVD 521 (749)
Q Consensus 443 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a-~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~ 521 (749)
.+|..++....+.+..+.|..+|.+..+.+ ..+...|...... +...++.+.|..+|+...+.+ ..+...|...++
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f--~~~~~~~~~Y~~ 78 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKF--PSDPDFWLEYLD 78 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHH--TT-HHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHC--CCCHHHHHHHHH
Confidence 468888888888888999999999998543 2233344444333 444677777999999998764 456778889999
Q ss_pred HHHHcCCHHHHHHHHHhC-CCCCCH----HhHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCchhHHHHHHHH
Q 004487 522 ILCRSGCFDEAEKLMAQM-PFEPDE----IMWSSVINSCRIHKNLEFAKKAADQLFKMEKLRDAAPYVAMSNIY 590 (749)
Q Consensus 522 ~~~~~g~~~~A~~~~~~~-~~~p~~----~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 590 (749)
.+.+.|+.+.|..+|++. ..-|.. .+|...+.--...|+++....+.+++.+.-| . ......+++-|
T Consensus 79 ~l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~-~-~~~~~~f~~ry 150 (280)
T PF05843_consen 79 FLIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFP-E-DNSLELFSDRY 150 (280)
T ss_dssp HHHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTT-T-S-HHHHHHCCT
T ss_pred HHHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhh-h-hhHHHHHHHHh
Confidence 999999999999999998 333433 5999999999999999999999999999887 3 33444444444
No 167
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.23 E-value=0.0036 Score=57.33 Aligned_cols=80 Identities=14% Similarity=0.099 Sum_probs=58.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC----HHhHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCchhHHHHHHH
Q 004487 515 HYASMVDILCRSGCFDEAEKLMAQM-PFEPD----EIMWSSVINSCRIHKNLEFAKKAADQLFKMEKLRDAAPYVAMSNI 589 (749)
Q Consensus 515 ~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 589 (749)
.+..+...+.+.|++++|...+++. ...|+ ...|..+...+...|++++|...++++++..| .+...+..++.+
T Consensus 37 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~ 115 (172)
T PRK02603 37 VYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNP-KQPSALNNIAVI 115 (172)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-ccHHHHHHHHHH
Confidence 4455556666667777777666655 22222 35677777788888888888888888888888 778888888888
Q ss_pred HHHcCC
Q 004487 590 YAVAGQ 595 (749)
Q Consensus 590 ~~~~g~ 595 (749)
|...|+
T Consensus 116 ~~~~g~ 121 (172)
T PRK02603 116 YHKRGE 121 (172)
T ss_pred HHHcCC
Confidence 888776
No 168
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.23 E-value=0.023 Score=56.56 Aligned_cols=161 Identities=12% Similarity=0.109 Sum_probs=117.3
Q ss_pred chHHHHH-HHHHhcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHH--
Q 004487 443 VSWNALI-SACAQNGDAQATLKSFEDMVQSGYQPDS-VSLLSVLSACSHCGLIEEGLQYFNSMTQKYKLRPKKEHYAS-- 518 (749)
Q Consensus 443 ~~~~~li-~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~-- 518 (749)
.+|-.+- ..+.-.|++++|.+.-....+. .++. .....--.++-..++.+.+...|++.. .+.|+...-..
T Consensus 169 ~~a~~lka~cl~~~~~~~~a~~ea~~ilkl--d~~n~~al~vrg~~~yy~~~~~ka~~hf~qal---~ldpdh~~sk~~~ 243 (486)
T KOG0550|consen 169 FKAKLLKAECLAFLGDYDEAQSEAIDILKL--DATNAEALYVRGLCLYYNDNADKAINHFQQAL---RLDPDHQKSKSAS 243 (486)
T ss_pred hHHHHhhhhhhhhcccchhHHHHHHHHHhc--ccchhHHHHhcccccccccchHHHHHHHhhhh---ccChhhhhHHhHh
Confidence 4444432 3456778999998887776663 3322 222222224556788899999998766 45565322221
Q ss_pred -----------HHHHHHHcCCHHHHHHHHHhC-CCCC-----CHHhHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCch
Q 004487 519 -----------MVDILCRSGCFDEAEKLMAQM-PFEP-----DEIMWSSVINSCRIHKNLEFAKKAADQLFKMEKLRDAA 581 (749)
Q Consensus 519 -----------li~~~~~~g~~~~A~~~~~~~-~~~p-----~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 581 (749)
=.+-..+.|++.+|.+.+.+. .+.| ++-.|.....+..+.|+.++|+.-.+.++++++ .-..
T Consensus 244 ~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~-syik 322 (486)
T KOG0550|consen 244 MMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDS-SYIK 322 (486)
T ss_pred hhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCH-HHHH
Confidence 123467899999999999887 5444 455666666778899999999999999999999 8889
Q ss_pred hHHHHHHHHHHcCCchhHHHHHHHHHhC
Q 004487 582 PYVAMSNIYAVAGQWESVSQVKKAMRER 609 (749)
Q Consensus 582 ~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 609 (749)
.|..-+++|...++|++|.+-+++..+.
T Consensus 323 all~ra~c~l~le~~e~AV~d~~~a~q~ 350 (486)
T KOG0550|consen 323 ALLRRANCHLALEKWEEAVEDYEKAMQL 350 (486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 9999999999999999999999987654
No 169
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.14 E-value=0.092 Score=52.45 Aligned_cols=111 Identities=18% Similarity=0.346 Sum_probs=49.9
Q ss_pred HHHHHHhcCCHHHHHHHHhhCCCCCcchHHHHHHHHHhc-CCHHHHHHHHHHHHHC----CCCCC--HHHHHHHHHHHhc
Q 004487 417 LLDMYAKSGSLKDAIQTFKEMPERNIVSWNALISACAQN-GDAQATLKSFEDMVQS----GYQPD--SVSLLSVLSACSH 489 (749)
Q Consensus 417 li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~-g~~~~A~~~~~~m~~~----g~~p~--~~t~~~ll~a~~~ 489 (749)
.++.|.+.|++..|-+++.. +...|-.. |++++|++.|++..+. | .+. ...+..+...+..
T Consensus 100 A~~~y~~~G~~~~aA~~~~~-----------lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~-~~~~a~~~~~~~A~l~~~ 167 (282)
T PF14938_consen 100 AIEIYREAGRFSQAAKCLKE-----------LAEIYEEQLGDYEKAIEYYQKAAELYEQEG-SPHSAAECLLKAADLYAR 167 (282)
T ss_dssp HHHHHHHCT-HHHHHHHHHH-----------HHHHHCCTT--HHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCcHHHHHHHHHH-----------HHHHHHHHcCCHHHHHHHHHHHHHHHHHCC-ChhhHHHHHHHHHHHHHH
Confidence 34455555555555444333 33444444 5666666666555431 2 111 1234445555666
Q ss_pred cCCHHHHHHHHHHhHHhcCCCC----Ch-HHHHHHHHHHHHcCCHHHHHHHHHhC
Q 004487 490 CGLIEEGLQYFNSMTQKYKLRP----KK-EHYASMVDILCRSGCFDEAEKLMAQM 539 (749)
Q Consensus 490 ~g~~~~a~~~~~~m~~~~~~~p----~~-~~~~~li~~~~~~g~~~~A~~~~~~~ 539 (749)
.|++++|.++|++.....--.+ +. ..+-..+-++...|+...|.+.+++.
T Consensus 168 l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~ 222 (282)
T PF14938_consen 168 LGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERY 222 (282)
T ss_dssp TT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred hCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 6666666666666554311111 11 12222233444456666666666654
No 170
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.12 E-value=0.0074 Score=62.31 Aligned_cols=98 Identities=14% Similarity=0.114 Sum_probs=50.5
Q ss_pred hccCCHHHHHHHHHHhHHhcCCCC-ChHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHhHHHHHHHHHhcCCHHHH
Q 004487 488 SHCGLIEEGLQYFNSMTQKYKLRP-KKEHYASMVDILCRSGCFDEAEKLMAQM-PFEP-DEIMWSSVINSCRIHKNLEFA 564 (749)
Q Consensus 488 ~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a 564 (749)
...|++++|+++|+...+. .| +...|..+..+|.+.|++++|+..++++ ...| +...|..+..+|...|++++|
T Consensus 13 ~~~~~~~~Ai~~~~~Al~~---~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~~~eA 89 (356)
T PLN03088 13 FVDDDFALAVDLYTQAIDL---DPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEYQTA 89 (356)
T ss_pred HHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCCHHHH
Confidence 3444555555555544421 22 2334444445555555555555555554 3333 344555555556666666666
Q ss_pred HHHHHHHhcCCCCCCchhHHHHHHH
Q 004487 565 KKAADQLFKMEKLRDAAPYVAMSNI 589 (749)
Q Consensus 565 ~~~~~~~~~~~~~~~~~~~~~l~~~ 589 (749)
+..++++++++| .+......+..+
T Consensus 90 ~~~~~~al~l~P-~~~~~~~~l~~~ 113 (356)
T PLN03088 90 KAALEKGASLAP-GDSRFTKLIKEC 113 (356)
T ss_pred HHHHHHHHHhCC-CCHHHHHHHHHH
Confidence 666666666666 555555444444
No 171
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.11 E-value=0.0058 Score=48.93 Aligned_cols=58 Identities=21% Similarity=0.275 Sum_probs=28.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHhH
Q 004487 445 WNALISACAQNGDAQATLKSFEDMVQSGYQPD-SVSLLSVLSACSHCGLIEEGLQYFNSMT 504 (749)
Q Consensus 445 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~ 504 (749)
|..+...+...|++++|+..+++..+. .|+ ...+..+...+...|++++|.+.++...
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 61 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALEL--DPDNADAYYNLAAAYYKLGKYEEALEDYEKAL 61 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555556666666666555552 222 2344444444555555555555554443
No 172
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=97.09 E-value=0.56 Score=50.20 Aligned_cols=284 Identities=15% Similarity=0.161 Sum_probs=129.9
Q ss_pred HHHHHcCCChHHHHHHHccCCCC-----CcchHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCcchHHHHHHHHHccCC
Q 004487 216 LDLYSKHDCVVEARKLFGEMPEV-----DGVSYNVMITCYAWNEQYKESLKLFRELQFTRFDRSQFPFSTLLSVVANKLD 290 (749)
Q Consensus 216 i~~y~~~g~~~~A~~~f~~~~~~-----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~ 290 (749)
|.++.+.|++-...++++.-... -..+|+.+...++....|++|.+.|..-.. ....+.++-+...
T Consensus 767 ielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~---------~e~~~ecly~le~ 837 (1189)
T KOG2041|consen 767 IELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGD---------TENQIECLYRLEL 837 (1189)
T ss_pred HHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc---------hHhHHHHHHHHHh
Confidence 55566666666666665443221 123566666666666666666666654311 0111222222222
Q ss_pred hHHHHHHHHHHHHhcCCcchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCCcccHHHHHHHHHhCCChhHHHHHHHHHHHC
Q 004487 291 LQIGRQIHTQTIVTTAISEVKVANSLVDMYAKCGRFEEAKEIFANLSHISTVPWTAMISAYVQKGNLEEALNLFIEMCRA 370 (749)
Q Consensus 291 ~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 370 (749)
++.-+. ....++.+....-.+.+|+.+.|.-++|.+.|-+...+. +.+..|...+++.+|.++-+..+-
T Consensus 838 f~~LE~-----la~~Lpe~s~llp~~a~mf~svGMC~qAV~a~Lr~s~pk-----aAv~tCv~LnQW~~avelaq~~~l- 906 (1189)
T KOG2041|consen 838 FGELEV-----LARTLPEDSELLPVMADMFTSVGMCDQAVEAYLRRSLPK-----AAVHTCVELNQWGEAVELAQRFQL- 906 (1189)
T ss_pred hhhHHH-----HHHhcCcccchHHHHHHHHHhhchHHHHHHHHHhccCcH-----HHHHHHHHHHHHHHHHHHHHhccc-
Confidence 221111 112234455555666677777777777766655443332 234555666666666666544322
Q ss_pred CCCcCHHhHHHHHHHhcccCcHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCCCC---cchHHH
Q 004487 371 NISADQATFASILRASAELASLSLGKQLHSFVIRSGFMSNVFSGSALLDMYAKSGSLKDAIQTFKEMPERN---IVSWNA 447 (749)
Q Consensus 371 g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~---~~~~~~ 447 (749)
|...|+ +. ..+-+++ ..+ .+ ---|.++.+.|..-+|.+++.+|.++. -+.|--
T Consensus 907 ---~qv~tl---ia--------k~aaqll----~~~-----~~-~eaIe~~Rka~~~~daarll~qmae~e~~K~~p~lr 962 (1189)
T KOG2041|consen 907 ---PQVQTL---IA--------KQAAQLL----ADA-----NH-MEAIEKDRKAGRHLDAARLLSQMAEREQEKYVPYLR 962 (1189)
T ss_pred ---hhHHHH---HH--------HHHHHHH----hhc-----ch-HHHHHHhhhcccchhHHHHHHHHhHHHhhccCCHHH
Confidence 222221 11 0111111 111 00 123566777777777777776665311 111111
Q ss_pred HHHHH----HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHH
Q 004487 448 LISAC----AQNGDAQATLKSFEDMVQSGYQPDSVSLLSVLSACSHCGLIEEGLQYFNSMTQKYKLRPKKEHYASMVDIL 523 (749)
Q Consensus 448 li~~~----~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~ 523 (749)
+-..| .-..+..++++-.++....|...|... +...|...++-++.+..-+ -....||-.|..--
T Consensus 963 ~KklYVL~AlLvE~h~~~ik~~~~~~~~g~~~dat~-------lles~~l~~~~ri~~n~Wr----gAEAyHFmilAQrq 1031 (1189)
T KOG2041|consen 963 LKKLYVLGALLVENHRQTIKELRKIDKHGFLEDATD-------LLESGLLAEQSRILENTWR----GAEAYHFMILAQRQ 1031 (1189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhcCcchhhhh-------hhhhhhhhhHHHHHHhhhh----hHHHHHHHHHHHHH
Confidence 11111 111223344444444444454333221 1223333343333332221 12344555555666
Q ss_pred HHcCCHHHHHHHHHhC----CCCCCHHhHHHHHHH
Q 004487 524 CRSGCFDEAEKLMAQM----PFEPDEIMWSSVINS 554 (749)
Q Consensus 524 ~~~g~~~~A~~~~~~~----~~~p~~~~~~~ll~~ 554 (749)
...|.++.|++---.+ .+-|-..+|+.|.-+
T Consensus 1032 l~eg~v~~Al~Tal~L~DYEd~lpP~eiySllALa 1066 (1189)
T KOG2041|consen 1032 LFEGRVKDALQTALILSDYEDFLPPAEIYSLLALA 1066 (1189)
T ss_pred HHhchHHHHHHHHhhhccHhhcCCHHHHHHHHHHH
Confidence 6778888887654333 344555666655433
No 173
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.09 E-value=0.33 Score=48.93 Aligned_cols=106 Identities=19% Similarity=0.222 Sum_probs=73.9
Q ss_pred HHHHHHHHHHcCCChHHHHHHHccCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCcchHHHHHHHHHccCC
Q 004487 211 VANALLDLYSKHDCVVEARKLFGEMPEVDGVSYNVMITCYAWNEQYKESLKLFRELQFTRFDRSQFPFSTLLSVVANKLD 290 (749)
Q Consensus 211 ~~~~Li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~ 290 (749)
+.+..|.-+...|+...|.++-.+..-||..-|-..|.+++..++|++-..+... +-++.-|..++.+|...|+
T Consensus 179 Sl~~Ti~~li~~~~~k~A~kl~k~Fkv~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~~~~~ 252 (319)
T PF04840_consen 179 SLNDTIRKLIEMGQEKQAEKLKKEFKVPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACLKYGN 252 (319)
T ss_pred CHHHHHHHHHHCCCHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHHHCCC
Confidence 4455566677788889999998888888888899999999999999877765432 2234667777777777777
Q ss_pred hHHHHHHHHHHHHhcCCcchhHHHHHHHHHHhcCCHHHHHHH
Q 004487 291 LQIGRQIHTQTIVTTAISEVKVANSLVDMYAKCGRFEEAKEI 332 (749)
Q Consensus 291 ~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~ 332 (749)
...|..+...+ .+..-+.+|.++|++.+|.+.
T Consensus 253 ~~eA~~yI~k~----------~~~~rv~~y~~~~~~~~A~~~ 284 (319)
T PF04840_consen 253 KKEASKYIPKI----------PDEERVEMYLKCGDYKEAAQE 284 (319)
T ss_pred HHHHHHHHHhC----------ChHHHHHHHHHCCCHHHHHHH
Confidence 66666555441 114456666777776666544
No 174
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.08 E-value=0.0016 Score=51.29 Aligned_cols=80 Identities=21% Similarity=0.364 Sum_probs=43.2
Q ss_pred cCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHHHcCCHHHH
Q 004487 455 NGDAQATLKSFEDMVQSGYQ-PDSVSLLSVLSACSHCGLIEEGLQYFNSMTQKYKLRPK-KEHYASMVDILCRSGCFDEA 532 (749)
Q Consensus 455 ~g~~~~A~~~~~~m~~~g~~-p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~~A 532 (749)
.|+++.|+.+++++.+.... |+...+..+..++.+.|++++|..+++. . ...|+ ....-.+..++.+.|++++|
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~---~~~~~~~~~~~l~a~~~~~l~~y~eA 77 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-L---KLDPSNPDIHYLLARCLLKLGKYEEA 77 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-H---THHHCHHHHHHHHHHHHHHTT-HHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-h---CCCCCCHHHHHHHHHHHHHhCCHHHH
Confidence 46677777777777664321 1333444456667777777777777765 2 12222 22223345666666666666
Q ss_pred HHHHHh
Q 004487 533 EKLMAQ 538 (749)
Q Consensus 533 ~~~~~~ 538 (749)
++.+++
T Consensus 78 i~~l~~ 83 (84)
T PF12895_consen 78 IKALEK 83 (84)
T ss_dssp HHHHHH
T ss_pred HHHHhc
Confidence 666654
No 175
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.07 E-value=0.0013 Score=49.22 Aligned_cols=52 Identities=8% Similarity=0.224 Sum_probs=39.7
Q ss_pred hcCCHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHcCCchhHHHHHHHHHhC
Q 004487 557 IHKNLEFAKKAADQLFKMEKLRDAAPYVAMSNIYAVAGQWESVSQVKKAMRER 609 (749)
Q Consensus 557 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 609 (749)
..|++++|+..++++++..| .+...+..++.+|.+.|++++|.++++.+...
T Consensus 3 ~~~~~~~A~~~~~~~l~~~p-~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~ 54 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQRNP-DNPEARLLLAQCYLKQGQYDEAEELLERLLKQ 54 (68)
T ss_dssp HTTHHHHHHHHHHHHHHHTT-TSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG
T ss_pred hccCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 46778888888888888888 77788888888888888888888887766543
No 176
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.07 E-value=0.091 Score=46.50 Aligned_cols=151 Identities=10% Similarity=0.107 Sum_probs=106.6
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCC-CCChHHHHHHHHHHHHcCCHHH
Q 004487 453 AQNGDAQATLKSFEDMVQSGYQPDSVSLLSVLSACSHCGLIEEGLQYFNSMTQKYKL-RPKKEHYASMVDILCRSGCFDE 531 (749)
Q Consensus 453 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~-~p~~~~~~~li~~~~~~g~~~~ 531 (749)
.+.=+++...+-..+-.+ ..|...--..|..+....|+..+|...|++... |+ --|....-.+..+....+++.+
T Consensus 67 ~q~ldP~R~~Rea~~~~~--~ApTvqnr~rLa~al~elGr~~EA~~hy~qals--G~fA~d~a~lLglA~Aqfa~~~~A~ 142 (251)
T COG4700 67 QQKLDPERHLREATEELA--IAPTVQNRYRLANALAELGRYHEAVPHYQQALS--GIFAHDAAMLLGLAQAQFAIQEFAA 142 (251)
T ss_pred HHhcChhHHHHHHHHHHh--hchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhc--cccCCCHHHHHHHHHHHHhhccHHH
Confidence 333344444333333333 567777777788888889999999998887764 43 3456667777788888889999
Q ss_pred HHHHHHhC-CCCC---CHHhHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHcCCchhHHHHHHHHH
Q 004487 532 AEKLMAQM-PFEP---DEIMWSSVINSCRIHKNLEFAKKAADQLFKMEKLRDAAPYVAMSNIYAVAGQWESVSQVKKAMR 607 (749)
Q Consensus 532 A~~~~~~~-~~~p---~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 607 (749)
|...++.. ...| ++...-.+...+...|..+.|+..|+.++...| ++..-......++++|+.+++..-...+.
T Consensus 143 a~~tLe~l~e~~pa~r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~yp--g~~ar~~Y~e~La~qgr~~ea~aq~~~v~ 220 (251)
T COG4700 143 AQQTLEDLMEYNPAFRSPDGHLLFARTLAAQGKYADAESAFEVAISYYP--GPQARIYYAEMLAKQGRLREANAQYVAVV 220 (251)
T ss_pred HHHHHHHHhhcCCccCCCCchHHHHHHHHhcCCchhHHHHHHHHHHhCC--CHHHHHHHHHHHHHhcchhHHHHHHHHHH
Confidence 88888876 2222 123344566778889999999999999999888 55555666788899999888877666654
Q ss_pred hC
Q 004487 608 ER 609 (749)
Q Consensus 608 ~~ 609 (749)
+.
T Consensus 221 d~ 222 (251)
T COG4700 221 DT 222 (251)
T ss_pred HH
Confidence 43
No 177
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=97.05 E-value=0.4 Score=47.72 Aligned_cols=272 Identities=16% Similarity=0.195 Sum_probs=171.7
Q ss_pred cCCHHHHHHHHHhcC---CCCcccHHHHHHH--HHhCCChhHHHHHHHHHHHCCCCcCH--HhHHHHHHHhcccCcHHHH
Q 004487 323 CGRFEEAKEIFANLS---HISTVPWTAMISA--YVQKGNLEEALNLFIEMCRANISADQ--ATFASILRASAELASLSLG 395 (749)
Q Consensus 323 ~g~~~~A~~~~~~~~---~~~~~~~~~li~~--~~~~g~~~~A~~l~~~m~~~g~~p~~--~t~~~ll~~~~~~~~~~~a 395 (749)
.|+-..|++.-.+.. ..|-.+.-.++.+ -.-.|+++.|.+-|+.|... |.. .-+..+.-..-+.|+.+.+
T Consensus 97 AGda~lARkmt~~~~~llssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~d---PEtRllGLRgLyleAqr~GareaA 173 (531)
T COG3898 97 AGDASLARKMTARASKLLSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDD---PETRLLGLRGLYLEAQRLGAREAA 173 (531)
T ss_pred cCchHHHHHHHHHHHhhhhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcC---hHHHHHhHHHHHHHHHhcccHHHH
Confidence 345555555443322 2333333333332 23467778888888877652 211 1222333334566777777
Q ss_pred HHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCC-----CCCcc--hHHHHHHHHHh---cCCHHHHHHHH
Q 004487 396 KQLHSFVIRSGFMSNVFSGSALLDMYAKSGSLKDAIQTFKEMP-----ERNIV--SWNALISACAQ---NGDAQATLKSF 465 (749)
Q Consensus 396 ~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~-----~~~~~--~~~~li~~~~~---~g~~~~A~~~~ 465 (749)
+++-+..-..- +.-.....+.+...+..|+++.|+++.+.-. ++++. .--.|+.+-+. .-+...|...-
T Consensus 174 r~yAe~Aa~~A-p~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A 252 (531)
T COG3898 174 RHYAERAAEKA-PQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDA 252 (531)
T ss_pred HHHHHHHHhhc-cCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHH
Confidence 77666554432 1224456778888889999999999888654 34432 22233333221 23456666665
Q ss_pred HHHHHCCCCCCHH-HHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHhC----C
Q 004487 466 EDMVQSGYQPDSV-SLLSVLSACSHCGLIEEGLQYFNSMTQKYKLRPKKEHYASMVDILCRSGCFDEAEKLMAQM----P 540 (749)
Q Consensus 466 ~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~----~ 540 (749)
.+..+ +.||.+ .-..-..++.+.|++.++-.+++.+-+ ..|.+..+...+ +.|.|+ .+++-+++. .
T Consensus 253 ~~a~K--L~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK---~ePHP~ia~lY~--~ar~gd--ta~dRlkRa~~L~s 323 (531)
T COG3898 253 LEANK--LAPDLVPAAVVAARALFRDGNLRKGSKILETAWK---AEPHPDIALLYV--RARSGD--TALDRLKRAKKLES 323 (531)
T ss_pred HHHhh--cCCccchHHHHHHHHHHhccchhhhhhHHHHHHh---cCCChHHHHHHH--HhcCCC--cHHHHHHHHHHHHh
Confidence 55555 788866 444556689999999999999999874 477776654433 344554 333333332 4
Q ss_pred CCCC-HHhHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHc-CCchhHHHHHHHHHhC
Q 004487 541 FEPD-EIMWSSVINSCRIHKNLEFAKKAADQLFKMEKLRDAAPYVAMSNIYAVA-GQWESVSQVKKAMRER 609 (749)
Q Consensus 541 ~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~a~~~~~~m~~~ 609 (749)
++|| ..+-.++..+-...|++..|..-.+.+....| ....|.+|+++-... |+-.++...+.+....
T Consensus 324 lk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~~p--res~~lLlAdIeeAetGDqg~vR~wlAqav~A 392 (531)
T COG3898 324 LKPNNAESSLAVAEAALDAGEFSAARAKAEAAAREAP--RESAYLLLADIEEAETGDQGKVRQWLAQAVKA 392 (531)
T ss_pred cCccchHHHHHHHHHHHhccchHHHHHHHHHHhhhCc--hhhHHHHHHHHHhhccCchHHHHHHHHHHhcC
Confidence 5665 55666667778889999999999999999998 778899999987655 9988888888776654
No 178
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=97.03 E-value=0.019 Score=55.28 Aligned_cols=102 Identities=6% Similarity=-0.008 Sum_probs=85.5
Q ss_pred CCChHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHhHHHHHHHHHh---cCCHHHHHHHHHHHhcCCCCCCchhHH
Q 004487 510 RPKKEHYASMVDILCRSGCFDEAEKLMAQM-PFEP-DEIMWSSVINSCRI---HKNLEFAKKAADQLFKMEKLRDAAPYV 584 (749)
Q Consensus 510 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~---~g~~~~a~~~~~~~~~~~~~~~~~~~~ 584 (749)
+-|.+.|--|...|.+.|++..|..-|.+. .+.| ++..+..+..++.. .....++..++++++.++| .|..+..
T Consensus 153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~-~~iral~ 231 (287)
T COG4235 153 PGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDP-ANIRALS 231 (287)
T ss_pred CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCC-ccHHHHH
Confidence 346788999999999999999999999887 4444 46677777766432 2357889999999999999 9999999
Q ss_pred HHHHHHHHcCCchhHHHHHHHHHhCCCc
Q 004487 585 AMSNIYAVAGQWESVSQVKKAMRERGVR 612 (749)
Q Consensus 585 ~l~~~~~~~g~~~~a~~~~~~m~~~g~~ 612 (749)
.|+..+...|++.+|...++.|.+....
T Consensus 232 lLA~~afe~g~~~~A~~~Wq~lL~~lp~ 259 (287)
T COG4235 232 LLAFAAFEQGDYAEAAAAWQMLLDLLPA 259 (287)
T ss_pred HHHHHHHHcccHHHHHHHHHHHHhcCCC
Confidence 9999999999999999999999887543
No 179
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.01 E-value=0.014 Score=53.38 Aligned_cols=123 Identities=16% Similarity=0.170 Sum_probs=77.5
Q ss_pred cCHHhHHHHHHHhc-----ccCcHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCcchHHHH
Q 004487 374 ADQATFASILRASA-----ELASLSLGKQLHSFVIRSGFMSNVFSGSALLDMYAKSGSLKDAIQTFKEMPERNIVSWNAL 448 (749)
Q Consensus 374 p~~~t~~~ll~~~~-----~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~l 448 (749)
.|..+|..++..+. +.|..+-....+..|.+.|+.-|..+|+.|++.+=| |.+- -.. .+.++
T Consensus 45 k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPK-g~fv-p~n-----------~fQ~~ 111 (228)
T PF06239_consen 45 KDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPK-GKFV-PRN-----------FFQAE 111 (228)
T ss_pred ccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCC-CCcc-ccc-----------HHHHH
Confidence 34455555555443 235555556667778888888888888888887754 2221 011 11111
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCC-HHHHHHHHHHhHHhcCCCC
Q 004487 449 ISACAQNGDAQATLKSFEDMVQSGYQPDSVSLLSVLSACSHCGL-IEEGLQYFNSMTQKYKLRP 511 (749)
Q Consensus 449 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~-~~~a~~~~~~m~~~~~~~p 511 (749)
..- ...+.+-|++++++|...|+-||..|+..+++.+.+.+. +.+.++..-.|-+-.++.|
T Consensus 112 F~h--yp~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~p~~K~~rmmYWmpkfk~~nP 173 (228)
T PF06239_consen 112 FMH--YPRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSHPMKKYRRMMYWMPKFKNINP 173 (228)
T ss_pred hcc--CcHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccHHHHHHHHHHHHHHHHhccCC
Confidence 111 124567899999999999999999999999999988765 3444454444544333443
No 180
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.01 E-value=0.0024 Score=47.31 Aligned_cols=60 Identities=15% Similarity=0.221 Sum_probs=47.1
Q ss_pred HHHHHHHcCCHHHHHHHHHhC-CCCC-CHHhHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCC
Q 004487 519 MVDILCRSGCFDEAEKLMAQM-PFEP-DEIMWSSVINSCRIHKNLEFAKKAADQLFKMEKLRD 579 (749)
Q Consensus 519 li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~ 579 (749)
+...+.+.|++++|.+.|++. ...| +...|..+...+...|++++|...++++++..| .+
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P-~~ 64 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDP-DN 64 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHST-T-
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc-CC
Confidence 345677888888888888887 5556 477888888888999999999999999999888 54
No 181
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.00 E-value=0.0064 Score=48.91 Aligned_cols=81 Identities=15% Similarity=0.189 Sum_probs=67.3
Q ss_pred hHHHHHHHHHcCCChhHHHHHHHHhHhcCCC-CCCcchHHHHHHhcCCCC--------ChHHHHHHHHHHHHhCCCCchh
Q 004487 39 SWTILIGGYSQKNQFREAFKLFVDMRTDGGS-DPDYVTFATLLSGCSEPD--------TANELIQVHADIIKFGYNSILI 109 (749)
Q Consensus 39 ~~~~li~~~~~~g~~~~a~~l~~~m~~~~g~-~p~~~~~~~ll~~~~~~~--------~~~~a~~~~~~~~~~g~~~~~~ 109 (749)
|-...|..+...+++.....+|+.+++. |+ .|+..+|+.+|.+..+.. .+-....+++.|+..++.|+..
T Consensus 27 t~i~~I~~~~~~~d~N~I~~lYqslkRN-~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~e 105 (120)
T PF08579_consen 27 TQIDNINSCFENEDYNIINPLYQSLKRN-GITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDE 105 (120)
T ss_pred HHHHHHHHHHhhcchHHHHHHHHHHHhc-CCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHH
Confidence 3455677777789999999999999998 88 999999999999876543 2445678899999999999999
Q ss_pred HHHHHHHHhHc
Q 004487 110 ICNSLVDSYCK 120 (749)
Q Consensus 110 ~~~~li~~~~~ 120 (749)
+|+.++..+.+
T Consensus 106 tYnivl~~Llk 116 (120)
T PF08579_consen 106 TYNIVLGSLLK 116 (120)
T ss_pred HHHHHHHHHHH
Confidence 99999887654
No 182
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=96.99 E-value=0.016 Score=59.95 Aligned_cols=121 Identities=12% Similarity=0.087 Sum_probs=92.4
Q ss_pred CCCCcCHHhHHHHHHHhcccCcHHHHHHHHHHHHHh--CCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCC----CCcc
Q 004487 370 ANISADQATFASILRASAELASLSLGKQLHSFVIRS--GFMSNVFSGSALLDMYAKSGSLKDAIQTFKEMPE----RNIV 443 (749)
Q Consensus 370 ~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~----~~~~ 443 (749)
.+...+...+..++..+....+++.++.++-..... ....-..+..++|..|.+.|..+.+..+++.=.. ||..
T Consensus 60 ~~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~ 139 (429)
T PF10037_consen 60 RKKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNF 139 (429)
T ss_pred cCCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChh
Confidence 345567778888888888888888888877666654 2223344456888888888888888888876543 7888
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcc
Q 004487 444 SWNALISACAQNGDAQATLKSFEDMVQSGYQPDSVSLLSVLSACSHC 490 (749)
Q Consensus 444 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~ 490 (749)
++|.|+..+.+.|++..|.++..+|...+...+..|+...+.+|.+.
T Consensus 140 s~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 140 SFNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred hHHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 88888888888888888888888888877777777777777776655
No 183
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.95 E-value=0.71 Score=50.10 Aligned_cols=116 Identities=16% Similarity=0.147 Sum_probs=89.3
Q ss_pred CCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHHhHHHHHH
Q 004487 474 QPDSVSLLSVLSACSHCGLIEEGLQYFNSMTQKYKLRPKKEHYASMVDILCRSGCFDEAEKLMAQMPFEPDEIMWSSVIN 553 (749)
Q Consensus 474 ~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~ 553 (749)
.-...|.+--+.-+...|+..+|.++-.+.+ -||...|-.=+.+++..+++++-+++-+++. .+.-|.-...
T Consensus 681 ~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fk-----ipdKr~~wLk~~aLa~~~kweeLekfAkskk---sPIGy~PFVe 752 (829)
T KOG2280|consen 681 SFVDLSLHDTVTTLILIGQNKRAEQLKSDFK-----IPDKRLWWLKLTALADIKKWEELEKFAKSKK---SPIGYLPFVE 752 (829)
T ss_pred ccccCcHHHHHHHHHHccchHHHHHHHHhcC-----CcchhhHHHHHHHHHhhhhHHHHHHHHhccC---CCCCchhHHH
Confidence 3444466666777888899999988775443 5888888888899999999999999888773 2455667889
Q ss_pred HHHhcCCHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHcCCchhHHHHHHHH
Q 004487 554 SCRIHKNLEFAKKAADQLFKMEKLRDAAPYVAMSNIYAVAGQWESVSQVKKAM 606 (749)
Q Consensus 554 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 606 (749)
+|.+.|+.++|.+.+-+.-.+ .-...+|.+.|++.+|.++--+-
T Consensus 753 ~c~~~~n~~EA~KYiprv~~l---------~ekv~ay~~~~~~~eAad~A~~~ 796 (829)
T KOG2280|consen 753 ACLKQGNKDEAKKYIPRVGGL---------QEKVKAYLRVGDVKEAADLAAEH 796 (829)
T ss_pred HHHhcccHHHHhhhhhccCCh---------HHHHHHHHHhccHHHHHHHHHHh
Confidence 999999999999988664322 25778999999999998875543
No 184
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=96.94 E-value=0.013 Score=47.18 Aligned_cols=79 Identities=19% Similarity=0.316 Sum_probs=62.6
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHhccC--------CHHHHHHHHHHhHHhcCCCCChHHH
Q 004487 446 NALISACAQNGDAQATLKSFEDMVQSGY-QPDSVSLLSVLSACSHCG--------LIEEGLQYFNSMTQKYKLRPKKEHY 516 (749)
Q Consensus 446 ~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~~t~~~ll~a~~~~g--------~~~~a~~~~~~m~~~~~~~p~~~~~ 516 (749)
...|..+...+++.....+|+.+++.|+ .|+..+|+.+|.+..+.. .+-+.+.+++.|... +++|+.++|
T Consensus 29 i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~-~lKP~~etY 107 (120)
T PF08579_consen 29 IDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSN-KLKPNDETY 107 (120)
T ss_pred HHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHh-ccCCcHHHH
Confidence 3456666667999999999999999999 899999999999866532 345677888888865 789999999
Q ss_pred HHHHHHHHH
Q 004487 517 ASMVDILCR 525 (749)
Q Consensus 517 ~~li~~~~~ 525 (749)
+.++..+.+
T Consensus 108 nivl~~Llk 116 (120)
T PF08579_consen 108 NIVLGSLLK 116 (120)
T ss_pred HHHHHHHHH
Confidence 888877654
No 185
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=96.92 E-value=0.0028 Score=48.24 Aligned_cols=57 Identities=11% Similarity=0.131 Sum_probs=50.0
Q ss_pred HHHHhcCCHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHcCCchhHHHHHHHHHhCC
Q 004487 553 NSCRIHKNLEFAKKAADQLFKMEKLRDAAPYVAMSNIYAVAGQWESVSQVKKAMRERG 610 (749)
Q Consensus 553 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 610 (749)
..+...++++.|...++++++++| .++..+...+.+|...|++++|.+.++...+.+
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p-~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~ 59 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDP-DDPELWLQRARCLFQLGRYEEALEDLERALELS 59 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCc-ccchhhHHHHHHHHHhccHHHHHHHHHHHHHHC
Confidence 457788999999999999999999 899999999999999999999999999887654
No 186
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=96.85 E-value=0.15 Score=53.80 Aligned_cols=261 Identities=14% Similarity=0.159 Sum_probs=127.0
Q ss_pred cchHHHHHHHHHcCCChhHHHHHH---------HHhHhcCCCCCCcchHHHHHHhcCCCCChHHHHHH--HHHHHHhCCC
Q 004487 37 AVSWTILIGGYSQKNQFREAFKLF---------VDMRTDGGSDPDYVTFATLLSGCSEPDTANELIQV--HADIIKFGYN 105 (749)
Q Consensus 37 ~~~~~~li~~~~~~g~~~~a~~l~---------~~m~~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~--~~~~~~~g~~ 105 (749)
.+.+.+-+-.|...|.+++|.++- +.+... ..+.-.|+..=.+|.+.++..-.+-+ ++++.+.|-.
T Consensus 556 evp~~~~m~q~Ieag~f~ea~~iaclgVv~~DW~~LA~~---ALeAL~f~~ARkAY~rVRdl~~L~li~EL~~~k~rge~ 632 (1081)
T KOG1538|consen 556 EVPQSAPMYQYIERGLFKEAYQIACLGVTDTDWRELAME---ALEALDFETARKAYIRVRDLRYLELISELEERKKRGET 632 (1081)
T ss_pred cccccccchhhhhccchhhhhcccccceecchHHHHHHH---HHhhhhhHHHHHHHHHHhccHHHHHHHHHHHHHhcCCC
Confidence 345566666777888888877642 111111 12334455555666666665544433 3456667777
Q ss_pred CchhHHHHHHHHhHcCCChhHHHHHHccCCCCCcchHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHh
Q 004487 106 SILIICNSLVDSYCKIRCLDLARRVFKEMPQKDSVSFNALITGFAKEGLNEEAIKLFVEMQHLGFKPSDFTFAAALSAGV 185 (749)
Q Consensus 106 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~ 185 (749)
|+... +...++-.|++.+|-++|.+ +|.-..|+++|..|+--. ...-+.
T Consensus 633 P~~iL---lA~~~Ay~gKF~EAAklFk~------------------~G~enRAlEmyTDlRMFD----------~aQE~~ 681 (1081)
T KOG1538|consen 633 PNDLL---LADVFAYQGKFHEAAKLFKR------------------SGHENRALEMYTDLRMFD----------YAQEFL 681 (1081)
T ss_pred chHHH---HHHHHHhhhhHHHHHHHHHH------------------cCchhhHHHHHHHHHHHH----------HHHHHh
Confidence 77654 34455667888888888865 444455555555543210 111122
Q ss_pred CCCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHcCCChHHHHHHHccCCCCCcchHHHHHHHHHhcCChhHHHHHHHH
Q 004487 186 GLADIALGRQVHAFVVKTNFVENVFVANALLDLYSKHDCVVEARKLFGEMPEVDGVSYNVMITCYAWNEQYKESLKLFRE 265 (749)
Q Consensus 186 ~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 265 (749)
..|+.++-+.+...-... ..++.--.+-..++...|+.++|..+. ..+|-.+-+.++-++
T Consensus 682 ~~g~~~eKKmL~RKRA~W--Ar~~kePkaAAEmLiSaGe~~KAi~i~------------------~d~gW~d~lidI~rk 741 (1081)
T KOG1538|consen 682 GSGDPKEKKMLIRKRADW--ARNIKEPKAAAEMLISAGEHVKAIEIC------------------GDHGWVDMLIDIARK 741 (1081)
T ss_pred hcCChHHHHHHHHHHHHH--hhhcCCcHHHHHHhhcccchhhhhhhh------------------hcccHHHHHHHHHhh
Confidence 223322222222111100 000000123345555666666665543 122222223333332
Q ss_pred HHHCCCCCCcchHHHHHHHHHccCChHHHHHHHHHHHHhcCCcchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCCcccHH
Q 004487 266 LQFTRFDRSQFPFSTLLSVVANKLDLQIGRQIHTQTIVTTAISEVKVANSLVDMYAKCGRFEEAKEIFANLSHISTVPWT 345 (749)
Q Consensus 266 m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 345 (749)
+- ..+..+...+-..+-+...+..|.++|..+-+. .+++++....+++++|..+-++.++--...|-
T Consensus 742 ld----~~ere~l~~~a~ylk~l~~~gLAaeIF~k~gD~---------ksiVqlHve~~~W~eAFalAe~hPe~~~dVy~ 808 (1081)
T KOG1538|consen 742 LD----KAEREPLLLCATYLKKLDSPGLAAEIFLKMGDL---------KSLVQLHVETQRWDEAFALAEKHPEFKDDVYM 808 (1081)
T ss_pred cc----hhhhhHHHHHHHHHhhccccchHHHHHHHhccH---------HHHhhheeecccchHhHhhhhhCccccccccc
Confidence 21 112223333333344455555566666554332 35777888889999999988888763332222
Q ss_pred HHHHHHHhCCChhHHHHHH
Q 004487 346 AMISAYVQKGNLEEALNLF 364 (749)
Q Consensus 346 ~li~~~~~~g~~~~A~~l~ 364 (749)
....-++...++++|.+.|
T Consensus 809 pyaqwLAE~DrFeEAqkAf 827 (1081)
T KOG1538|consen 809 PYAQWLAENDRFEEAQKAF 827 (1081)
T ss_pred hHHHHhhhhhhHHHHHHHH
Confidence 2223333344444444333
No 187
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=96.85 E-value=0.01 Score=58.97 Aligned_cols=129 Identities=14% Similarity=0.144 Sum_probs=99.9
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHH-cCCHHHHHHHHHhC--CCCCCHHhHHHHHHH
Q 004487 478 VSLLSVLSACSHCGLIEEGLQYFNSMTQKYKLRPKKEHYASMVDILCR-SGCFDEAEKLMAQM--PFEPDEIMWSSVINS 554 (749)
Q Consensus 478 ~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~-~g~~~~A~~~~~~~--~~~p~~~~~~~ll~~ 554 (749)
.+|..++...-+.+..+.|..+|....+.. .-+...|.....+-.+ .++.+.|.++|+.. .+..+...|...+.-
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~--~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~ 79 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDK--RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDF 79 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC--CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCC--CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Confidence 467888888889999999999999998432 2234556555555444 56666699999998 444578899999999
Q ss_pred HHhcCCHHHHHHHHHHHhcCCCCCC---chhHHHHHHHHHHcCCchhHHHHHHHHHhC
Q 004487 555 CRIHKNLEFAKKAADQLFKMEKLRD---AAPYVAMSNIYAVAGQWESVSQVKKAMRER 609 (749)
Q Consensus 555 ~~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 609 (749)
+...++.+.|..+|++.+..-+ .+ ...|...+..-.+.|+++.+.++.+++.+.
T Consensus 80 l~~~~d~~~aR~lfer~i~~l~-~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~ 136 (280)
T PF05843_consen 80 LIKLNDINNARALFERAISSLP-KEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL 136 (280)
T ss_dssp HHHTT-HHHHHHHHHHHCCTSS-CHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred HHHhCcHHHHHHHHHHHHHhcC-chhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 9999999999999999998765 33 358889999999999999999999998775
No 188
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=96.82 E-value=0.066 Score=48.71 Aligned_cols=80 Identities=14% Similarity=0.196 Sum_probs=51.1
Q ss_pred cchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCC-hHHHHH
Q 004487 442 IVSWNALISACAQNGDAQATLKSFEDMVQSGYQPD--SVSLLSVLSACSHCGLIEEGLQYFNSMTQKYKLRPK-KEHYAS 518 (749)
Q Consensus 442 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~ 518 (749)
...|..+...+...|++++|+..|++.......|. ..++..+...+.+.|+.++|+..++..... .|+ ...+..
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~---~~~~~~~~~~ 111 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALER---NPFLPQALNN 111 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CcCcHHHHHH
Confidence 34566666777778888888888888876432221 236667777788888888888888776632 332 334444
Q ss_pred HHHHHH
Q 004487 519 MVDILC 524 (749)
Q Consensus 519 li~~~~ 524 (749)
+...+.
T Consensus 112 la~i~~ 117 (168)
T CHL00033 112 MAVICH 117 (168)
T ss_pred HHHHHH
Confidence 554554
No 189
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=96.77 E-value=0.17 Score=49.01 Aligned_cols=52 Identities=17% Similarity=0.154 Sum_probs=36.2
Q ss_pred HHHhcCCHHHHHHHHHhcCCCCccc------HHHHHHHHHhCCChhHHHHHHHHHHHC
Q 004487 319 MYAKCGRFEEAKEIFANLSHISTVP------WTAMISAYVQKGNLEEALNLFIEMCRA 370 (749)
Q Consensus 319 ~~~~~g~~~~A~~~~~~~~~~~~~~------~~~li~~~~~~g~~~~A~~l~~~m~~~ 370 (749)
.+.+.|++++|.+.|+.+....+.+ .-.+..+|.+.+++++|...|++..+.
T Consensus 41 ~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~ 98 (243)
T PRK10866 41 QKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRL 98 (243)
T ss_pred HHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence 3456788888888888876533332 123456777888888888888888774
No 190
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=96.77 E-value=0.018 Score=57.16 Aligned_cols=130 Identities=9% Similarity=0.089 Sum_probs=93.8
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHh---HHhcCCCC-ChHHHHHHHHHHHHcCCHHHHHHHHHhC-------CC-CCCHH
Q 004487 479 SLLSVLSACSHCGLIEEGLQYFNSM---TQKYKLRP-KKEHYASMVDILCRSGCFDEAEKLMAQM-------PF-EPDEI 546 (749)
Q Consensus 479 t~~~ll~a~~~~g~~~~a~~~~~~m---~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~-------~~-~p~~~ 546 (749)
.|..|.+.|.-.|+++.|+..++.- .+++|-.. ....++.+..++.-.|+++.|.+.++.. +- ...+.
T Consensus 197 a~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQ 276 (639)
T KOG1130|consen 197 AYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQ 276 (639)
T ss_pred hhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHH
Confidence 4556666666788999999877642 33444333 2356778888999999999999988765 21 12344
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHhcCC-----CCCCchhHHHHHHHHHHcCCchhHHHHHHHHHh
Q 004487 547 MWSSVINSCRIHKNLEFAKKAADQLFKME-----KLRDAAPYVAMSNIYAVAGQWESVSQVKKAMRE 608 (749)
Q Consensus 547 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 608 (749)
+.-+|.+.|....+++.|+..+++-+.+. ......+|..|+++|...|..++|..+.+.-.+
T Consensus 277 scYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~ 343 (639)
T KOG1130|consen 277 SCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLR 343 (639)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 55678888888889999998887655421 124567899999999999999999988776543
No 191
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=96.76 E-value=0.022 Score=59.01 Aligned_cols=110 Identities=13% Similarity=0.035 Sum_probs=53.8
Q ss_pred CCCChhhHHHHHHHHhCCCChHHHHHHHHHHHHcC--CCCChhHHHHHHHHHHcCCChHHHHHHHccCCC----CCcchH
Q 004487 170 FKPSDFTFAAALSAGVGLADIALGRQVHAFVVKTN--FVENVFVANALLDLYSKHDCVVEARKLFGEMPE----VDGVSY 243 (749)
Q Consensus 170 ~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g--~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~----~~~~~~ 243 (749)
.+.+...+..++..+....+++.++.++-...... ...-..+..+++..|.+.|..+.+..++..=.. +|..++
T Consensus 62 ~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~ 141 (429)
T PF10037_consen 62 KPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSF 141 (429)
T ss_pred CCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhH
Confidence 44466666666666666666666666655554431 111122333445555555544444444443322 444444
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHCCCCCCcchHH
Q 004487 244 NVMITCYAWNEQYKESLKLFRELQFTRFDRSQFPFS 279 (749)
Q Consensus 244 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~ 279 (749)
|.++..+.+.|++..|.++..+|...+...+..|+.
T Consensus 142 n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~ 177 (429)
T PF10037_consen 142 NLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQA 177 (429)
T ss_pred HHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHH
Confidence 444444444455555555444444444444444443
No 192
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=96.75 E-value=0.0033 Score=47.26 Aligned_cols=64 Identities=14% Similarity=0.232 Sum_probs=48.6
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHhHHHHHHHHHhcC-CHHHHHHHHHHHhcCCC
Q 004487 513 KEHYASMVDILCRSGCFDEAEKLMAQM-PFEP-DEIMWSSVINSCRIHK-NLEFAKKAADQLFKMEK 576 (749)
Q Consensus 513 ~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g-~~~~a~~~~~~~~~~~~ 576 (749)
...|..+...+...|++++|++.|++. ...| +...|..+..++...| +.++|+..++++++++|
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 455666777777788888888877776 4445 3667777888888888 68888888888888876
No 193
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=96.73 E-value=0.037 Score=48.23 Aligned_cols=94 Identities=9% Similarity=0.116 Sum_probs=69.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhhCC--C-CCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHh
Q 004487 413 SGSALLDMYAKSGSLKDAIQTFKEMP--E-RNIVSWNALISACAQNGDAQATLKSFEDMVQSGYQPD-SVSLLSVLSACS 488 (749)
Q Consensus 413 ~~~~li~~y~~~g~~~~A~~~~~~~~--~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~ 488 (749)
..-.+...+...|++++|.++|+-+. . .+..-|-.|...+-..|++++|+..|...... .|| ..++-.+..++.
T Consensus 37 ~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L--~~ddp~~~~~ag~c~L 114 (157)
T PRK15363 37 TLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQI--KIDAPQAPWAAAECYL 114 (157)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc--CCCCchHHHHHHHHHH
Confidence 33445556677888888888888765 2 34566777888888888888888888888884 454 457777777888
Q ss_pred ccCCHHHHHHHHHHhHHhcC
Q 004487 489 HCGLIEEGLQYFNSMTQKYK 508 (749)
Q Consensus 489 ~~g~~~~a~~~~~~m~~~~~ 508 (749)
..|+.+.|++.|+......+
T Consensus 115 ~lG~~~~A~~aF~~Ai~~~~ 134 (157)
T PRK15363 115 ACDNVCYAIKALKAVVRICG 134 (157)
T ss_pred HcCCHHHHHHHHHHHHHHhc
Confidence 88888888888887775433
No 194
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=96.69 E-value=0.0028 Score=47.44 Aligned_cols=59 Identities=22% Similarity=0.432 Sum_probs=32.3
Q ss_pred ccCCHHHHHHHHHHhHHhcCCCC-ChHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCCHHhHHH
Q 004487 489 HCGLIEEGLQYFNSMTQKYKLRP-KKEHYASMVDILCRSGCFDEAEKLMAQM-PFEPDEIMWSS 550 (749)
Q Consensus 489 ~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~ 550 (749)
..|++++|+++|+.+... .| +...+..+..+|.+.|++++|.++++++ ...|+...|..
T Consensus 3 ~~~~~~~A~~~~~~~l~~---~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~ 63 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQR---NPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQ 63 (68)
T ss_dssp HTTHHHHHHHHHHHHHHH---TTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHH
T ss_pred hccCHHHHHHHHHHHHHH---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHH
Confidence 456666666666666543 23 4455555666666666666666666666 34455333333
No 195
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=96.69 E-value=0.041 Score=46.18 Aligned_cols=91 Identities=14% Similarity=0.173 Sum_probs=67.9
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCC-ChHHHHHHHHHHH
Q 004487 448 LISACAQNGDAQATLKSFEDMVQSGYQPDS--VSLLSVLSACSHCGLIEEGLQYFNSMTQKYKLRP-KKEHYASMVDILC 524 (749)
Q Consensus 448 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~ 524 (749)
+..++-..|+.++|+.+|++....|..... ..+..+.+++...|++++|..+|+.....+.-.+ +......+..++.
T Consensus 7 ~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~ 86 (120)
T PF12688_consen 7 LAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALY 86 (120)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHH
Confidence 456677889999999999999998876653 3677788889999999999999998886532111 1222233445778
Q ss_pred HcCCHHHHHHHHHh
Q 004487 525 RSGCFDEAEKLMAQ 538 (749)
Q Consensus 525 ~~g~~~~A~~~~~~ 538 (749)
..|+.++|.+.+-.
T Consensus 87 ~~gr~~eAl~~~l~ 100 (120)
T PF12688_consen 87 NLGRPKEALEWLLE 100 (120)
T ss_pred HCCCHHHHHHHHHH
Confidence 88999999887754
No 196
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=96.63 E-value=0.072 Score=57.66 Aligned_cols=134 Identities=10% Similarity=0.094 Sum_probs=97.6
Q ss_pred CCCCCHHHHHHHHHHHhc--c---CCHHHHHHHHHHhHHhcCCCCCh-HHHHHHHHHHHHc--------CCHHHHHHHHH
Q 004487 472 GYQPDSVSLLSVLSACSH--C---GLIEEGLQYFNSMTQKYKLRPKK-EHYASMVDILCRS--------GCFDEAEKLMA 537 (749)
Q Consensus 472 g~~p~~~t~~~ll~a~~~--~---g~~~~a~~~~~~m~~~~~~~p~~-~~~~~li~~~~~~--------g~~~~A~~~~~ 537 (749)
+.+.|...|...+.+... . +..++|..+|++..+ +.|+- ..|..+..++... ++++++.+..+
T Consensus 332 ~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~---ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~ 408 (517)
T PRK10153 332 GLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILK---SEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELD 408 (517)
T ss_pred cCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH---hCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHH
Confidence 456677888888887543 2 337799999999884 57864 3444433333221 12344555555
Q ss_pred hC---C-CCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHcCCchhHHHHHHHHHhCC
Q 004487 538 QM---P-FEPDEIMWSSVINSCRIHKNLEFAKKAADQLFKMEKLRDAAPYVAMSNIYAVAGQWESVSQVKKAMRERG 610 (749)
Q Consensus 538 ~~---~-~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 610 (749)
+. + ...+..+|.++.-.....|++++|...++++++++| +...|..++.+|...|+.++|.+.+++.....
T Consensus 409 ~a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~p--s~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~ 483 (517)
T PRK10153 409 NIVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEM--SWLNYVLLGKVYELKGDNRLAADAYSTAFNLR 483 (517)
T ss_pred HhhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 53 1 223567788777777778999999999999999998 57899999999999999999999999886654
No 197
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.58 E-value=1.5 Score=47.65 Aligned_cols=338 Identities=14% Similarity=0.052 Sum_probs=162.3
Q ss_pred HCCCCCChhhHHH-----HHHHHhCCCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHcCC---ChHHHHHHHccCCC-
Q 004487 167 HLGFKPSDFTFAA-----ALSAGVGLADIALGRQVHAFVVKTNFVENVFVANALLDLYSKHD---CVVEARKLFGEMPE- 237 (749)
Q Consensus 167 ~~g~~p~~~t~~~-----ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g---~~~~A~~~f~~~~~- 237 (749)
.-|++.+..-|.. +++-+...+.+..|.++-..+--.-... ..++.....-+.+.. +-+-+..+=+++..
T Consensus 425 ~~gIplT~~qy~~l~~~~vi~Rl~~r~~Y~vaIQva~~l~~p~~~~-~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~~ 503 (829)
T KOG2280|consen 425 RIGIPLTHEQYRHLSEEVVIDRLVDRHLYSVAIQVAKLLNLPESQG-DRVLLEWARRKIKQSDKMDEEVLDKIDEKLSAK 503 (829)
T ss_pred ccCccccHHHHhhhchhhhhHHHHhcchhHHHHHHHHHhCCccccc-cHHHHHHHHHHHhccCccchHHHHHHHHHhccc
Confidence 3456655554443 4555556666677776665553211111 456666666666553 23334444444444
Q ss_pred -CCcchHHHHHHHHHhcCChhHHHHHHHHHHHCCC----CCCcchHHHHHHHHHccCChHHHHHHHHHHHHhcCCcchhH
Q 004487 238 -VDGVSYNVMITCYAWNEQYKESLKLFRELQFTRF----DRSQFPFSTLLSVVANKLDLQIGRQIHTQTIVTTAISEVKV 312 (749)
Q Consensus 238 -~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~----~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~ 312 (749)
.+-++|..+.+.-.+.|+++.|..+++.=...+- -.+..-+...+.-+...|+.+...++.-++...-...
T Consensus 504 ~~~~iSy~~iA~~Ay~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~~~~s---- 579 (829)
T KOG2280|consen 504 LTPGISYAAIARRAYQEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNKLNRS---- 579 (829)
T ss_pred CCCceeHHHHHHHHHhcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHHHHHH----
Confidence 5667788888887888888888887764222110 1122234445555566666666555554444321000
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhcCC-CCcccHHHHHHHHHhCCChhHHHHHHHHH------HHCCCCcCHHhHHHHHHH
Q 004487 313 ANSLVDMYAKCGRFEEAKEIFANLSH-ISTVPWTAMISAYVQKGNLEEALNLFIEM------CRANISADQATFASILRA 385 (749)
Q Consensus 313 ~~~li~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~l~~~m------~~~g~~p~~~t~~~ll~~ 385 (749)
+......+...|..++..... .|..+ +..+-+.++-.+++.-|..= ...|..|+.. ..-.+
T Consensus 580 -----~l~~~l~~~p~a~~lY~~~~r~~~~~~----l~d~y~q~dn~~~~a~~~~q~~~~~~~~~~r~~~lk---~~a~~ 647 (829)
T KOG2280|consen 580 -----SLFMTLRNQPLALSLYRQFMRHQDRAT----LYDFYNQDDNHQALASFHLQASYAAETIEGRIPALK---TAANA 647 (829)
T ss_pred -----HHHHHHHhchhhhHHHHHHHHhhchhh----hhhhhhcccchhhhhhhhhhhhhhhhhhcccchhHH---HHHHH
Confidence 001111122233333333221 11111 11111222222222222110 0122333322 22333
Q ss_pred hcccCcHHHHHH----------HHHHHH-HhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCcchHHHHHHHHHh
Q 004487 386 SAELASLSLGKQ----------LHSFVI-RSGFMSNVFSGSALLDMYAKSGSLKDAIQTFKEMPERNIVSWNALISACAQ 454 (749)
Q Consensus 386 ~~~~~~~~~a~~----------~~~~~~-~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~ 454 (749)
|++........+ +...+. +.|....-.+.+--+.-+...|+..+|.++-.+.+-||-..|-.=+.+++.
T Consensus 648 ~a~sk~~s~e~ka~ed~~kLl~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~FkipdKr~~wLk~~aLa~ 727 (829)
T KOG2280|consen 648 FAKSKEKSFEAKALEDQMKLLKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFKIPDKRLWWLKLTALAD 727 (829)
T ss_pred HhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhccccccCcHHHHHHHHHHccchHHHHHHHHhcCCcchhhHHHHHHHHHh
Confidence 433333111111 111111 112222222233334445556777777777777777777777777777777
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHHcCCHHHHHH
Q 004487 455 NGDAQATLKSFEDMVQSGYQPDSVSLLSVLSACSHCGLIEEGLQYFNSMTQKYKLRPKKEHYASMVDILCRSGCFDEAEK 534 (749)
Q Consensus 455 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~ 534 (749)
.+++++-+++-+.+.. .+-|.-...+|.+.|+.++|.+++.+.. |.. -.+.+|.+.|++.+|.+
T Consensus 728 ~~kweeLekfAkskks------PIGy~PFVe~c~~~~n~~EA~KYiprv~---~l~-------ekv~ay~~~~~~~eAad 791 (829)
T KOG2280|consen 728 IKKWEELEKFAKSKKS------PIGYLPFVEACLKQGNKDEAKKYIPRVG---GLQ-------EKVKAYLRVGDVKEAAD 791 (829)
T ss_pred hhhHHHHHHHHhccCC------CCCchhHHHHHHhcccHHHHhhhhhccC---ChH-------HHHHHHHHhccHHHHHH
Confidence 7777666555444321 3345556677777777777777775432 111 35667777777777766
Q ss_pred HHH
Q 004487 535 LMA 537 (749)
Q Consensus 535 ~~~ 537 (749)
+--
T Consensus 792 ~A~ 794 (829)
T KOG2280|consen 792 LAA 794 (829)
T ss_pred HHH
Confidence 543
No 198
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=96.57 E-value=0.02 Score=52.33 Aligned_cols=96 Identities=15% Similarity=0.238 Sum_probs=72.0
Q ss_pred HHHhhC--CCCCcchHHHHHHHHHh-----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcc--------------
Q 004487 432 QTFKEM--PERNIVSWNALISACAQ-----NGDAQATLKSFEDMVQSGYQPDSVSLLSVLSACSHC-------------- 490 (749)
Q Consensus 432 ~~~~~~--~~~~~~~~~~li~~~~~-----~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~-------------- 490 (749)
..|+.. ..++..+|..++..|.+ .|..+=....+..|.+-|+.-|..+|+.||+.+=+.
T Consensus 35 ~~f~~~~~~~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~h 114 (228)
T PF06239_consen 35 ELFERAPGQAKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMH 114 (228)
T ss_pred HHHHHHhhccccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhcc
Confidence 444444 35666777777777764 467777778888899999999999999999886542
Q ss_pred --CCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHHcCC
Q 004487 491 --GLIEEGLQYFNSMTQKYKLRPKKEHYASMVDILCRSGC 528 (749)
Q Consensus 491 --g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~ 528 (749)
.+-+-|++++++|.. +|+.||.+++..+++.+++.+.
T Consensus 115 yp~Qq~c~i~lL~qME~-~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 115 YPRQQECAIDLLEQMEN-NGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred CcHHHHHHHHHHHHHHH-cCCCCcHHHHHHHHHHhccccH
Confidence 234678888888874 5888888888888888877665
No 199
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=96.54 E-value=0.002 Score=40.12 Aligned_cols=33 Identities=18% Similarity=0.431 Sum_probs=30.7
Q ss_pred HHHHhcCCCCCCchhHHHHHHHHHHcCCchhHHH
Q 004487 568 ADQLFKMEKLRDAAPYVAMSNIYAVAGQWESVSQ 601 (749)
Q Consensus 568 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 601 (749)
|+++++++| .++.+|..|+.+|...|++++|++
T Consensus 2 y~kAie~~P-~n~~a~~nla~~~~~~g~~~~A~~ 34 (34)
T PF13431_consen 2 YKKAIELNP-NNAEAYNNLANLYLNQGDYEEAIA 34 (34)
T ss_pred hHHHHHHCC-CCHHHHHHHHHHHHHCcCHHhhcC
Confidence 688999999 999999999999999999999863
No 200
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=96.54 E-value=0.071 Score=47.14 Aligned_cols=107 Identities=14% Similarity=0.202 Sum_probs=92.4
Q ss_pred hHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHhC---CCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHhcCCCC-C
Q 004487 503 MTQKYKLRPKKEHYASMVDILCRSGCFDEAEKLMAQM---PFEPDEIMWSSVINSCRIHKNLEFAKKAADQLFKMEKL-R 578 (749)
Q Consensus 503 m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~---~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~-~ 578 (749)
..++..+-|+..+--.|..++.+.|+..||...|++. .+.-|....-.+..+....++...|...++++.+..|. .
T Consensus 79 a~~~~~~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r 158 (251)
T COG4700 79 ATEELAIAPTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFR 158 (251)
T ss_pred HHHHHhhchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccC
Confidence 3344467889888889999999999999999999988 45668888888999999999999999999999998772 2
Q ss_pred CchhHHHHHHHHHHcCCchhHHHHHHHHHhC
Q 004487 579 DAAPYVAMSNIYAVAGQWESVSQVKKAMRER 609 (749)
Q Consensus 579 ~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 609 (749)
++.+...++..|...|+..+|+.-++...+.
T Consensus 159 ~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~ 189 (251)
T COG4700 159 SPDGHLLFARTLAAQGKYADAESAFEVAISY 189 (251)
T ss_pred CCCchHHHHHHHHhcCCchhHHHHHHHHHHh
Confidence 5677888999999999999999999988765
No 201
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=96.53 E-value=0.38 Score=40.10 Aligned_cols=141 Identities=13% Similarity=0.160 Sum_probs=86.6
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHHcCCHHH
Q 004487 452 CAQNGDAQATLKSFEDMVQSGYQPDSVSLLSVLSACSHCGLIEEGLQYFNSMTQKYKLRPKKEHYASMVDILCRSGCFDE 531 (749)
Q Consensus 452 ~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~ 531 (749)
+.-.|..++..++..+...+. +..-++.++.--..+-+-+-..++++.+-+-+.+.|-. ..-.++..|.+.|..
T Consensus 12 ~ildG~V~qGveii~k~v~Ss---ni~E~NWvICNiiDaa~C~yvv~~LdsIGkiFDis~C~-NlKrVi~C~~~~n~~-- 85 (161)
T PF09205_consen 12 RILDGDVKQGVEIIEKTVNSS---NIKEYNWVICNIIDAADCDYVVETLDSIGKIFDISKCG-NLKRVIECYAKRNKL-- 85 (161)
T ss_dssp HHHTT-HHHHHHHHHHHHHHS----HHHHTHHHHHHHHH--HHHHHHHHHHHGGGS-GGG-S--THHHHHHHHHTT----
T ss_pred HHHhchHHHHHHHHHHHcCcC---CccccceeeeecchhhchhHHHHHHHHHhhhcCchhhc-chHHHHHHHHHhcch--
Confidence 344678888888888877642 44455666655455555566666666665443333311 122344444444432
Q ss_pred HHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHcCCchhHHHHHHHHHhCCC
Q 004487 532 AEKLMAQMPFEPDEIMWSSVINSCRIHKNLEFAKKAADQLFKMEKLRDAAPYVAMSNIYAVAGQWESVSQVKKAMRERGV 611 (749)
Q Consensus 532 A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~ 611 (749)
..-....++.....|.-+.-.++++.+.+.+. .++....-++++|.+.|+..++.+++.+.-++|+
T Consensus 86 -------------se~vD~ALd~lv~~~kkDqLdki~~~l~kn~~-~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~ 151 (161)
T PF09205_consen 86 -------------SEYVDLALDILVKQGKKDQLDKIYNELKKNEE-INPEFLVKIANAYKKLGNTREANELLKEACEKGL 151 (161)
T ss_dssp --------------HHHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-
T ss_pred -------------HHHHHHHHHHHHHhccHHHHHHHHHHHhhccC-CCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhch
Confidence 23344567777888999999999999987665 7999999999999999999999999999999997
Q ss_pred c
Q 004487 612 R 612 (749)
Q Consensus 612 ~ 612 (749)
+
T Consensus 152 k 152 (161)
T PF09205_consen 152 K 152 (161)
T ss_dssp H
T ss_pred H
Confidence 5
No 202
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=96.53 E-value=0.38 Score=48.89 Aligned_cols=158 Identities=15% Similarity=0.153 Sum_probs=103.1
Q ss_pred HHHHHHHhcCCHHHHHHHHhhCCCC-C------cchHHHHHHHHHh---cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 004487 416 ALLDMYAKSGSLKDAIQTFKEMPER-N------IVSWNALISACAQ---NGDAQATLKSFEDMVQSGYQPDSVSLLSVLS 485 (749)
Q Consensus 416 ~li~~y~~~g~~~~A~~~~~~~~~~-~------~~~~~~li~~~~~---~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~ 485 (749)
.++-.|-...+++...++.+.+... + ...-....-++.+ .|+.++|++++..+....-.++..|+..+..
T Consensus 146 ~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GR 225 (374)
T PF13281_consen 146 NLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGR 225 (374)
T ss_pred HHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHH
Confidence 4445677888888888888887743 1 1122233445556 7899999999999776667778888877777
Q ss_pred HHhc---------cCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHHcCCHHH----HHHHH---Hh-----CC--CC
Q 004487 486 ACSH---------CGLIEEGLQYFNSMTQKYKLRPKKEHYASMVDILCRSGCFDE----AEKLM---AQ-----MP--FE 542 (749)
Q Consensus 486 a~~~---------~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~----A~~~~---~~-----~~--~~ 542 (749)
.|-. ...+++|...+.+. +.+.|+..+--.++-++...|...+ ..++- .. -. -.
T Consensus 226 IyKD~~~~s~~~d~~~ldkAi~~Y~kg---Fe~~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~~ 302 (374)
T PF13281_consen 226 IYKDLFLESNFTDRESLDKAIEWYRKG---FEIEPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEKM 302 (374)
T ss_pred HHHHHHHHcCccchHHHHHHHHHHHHH---HcCCccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhcccccc
Confidence 6532 23467777776543 4566765544445555555554222 22222 11 11 22
Q ss_pred CCHHhHHHHHHHHHhcCCHHHHHHHHHHHhcCCC
Q 004487 543 PDEIMWSSVINSCRIHKNLEFAKKAADQLFKMEK 576 (749)
Q Consensus 543 p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~ 576 (749)
.|--.+.+++.++.-.||.+.|.+.+++++++.|
T Consensus 303 ~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~ 336 (374)
T PF13281_consen 303 QDYWDVATLLEASVLAGDYEKAIQAAEKAFKLKP 336 (374)
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCC
Confidence 3455567899999999999999999999999877
No 203
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=96.51 E-value=1.3 Score=47.54 Aligned_cols=127 Identities=13% Similarity=0.104 Sum_probs=69.6
Q ss_pred CCChhHHHHHHccCCCCCcchHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCC----hhhHHHHHHHHhCCCChHHHHHH
Q 004487 121 IRCLDLARRVFKEMPQKDSVSFNALITGFAKEGLNEEAIKLFVEMQHLGFKPS----DFTFAAALSAGVGLADIALGRQV 196 (749)
Q Consensus 121 ~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~----~~t~~~ll~a~~~~~~~~~a~~~ 196 (749)
.|.+++|++++-.|.++|.. |..+.+.|++-...++++. -|-..| ...++.+-..++....++.|.+.
T Consensus 747 ~g~feeaek~yld~drrDLA-----ielr~klgDwfrV~qL~r~---g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~y 818 (1189)
T KOG2041|consen 747 YGEFEEAEKLYLDADRRDLA-----IELRKKLGDWFRVYQLIRN---GGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKY 818 (1189)
T ss_pred hcchhHhhhhhhccchhhhh-----HHHHHhhhhHHHHHHHHHc---cCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 37888888888888777653 5556667777666666542 111111 12344455555555555555555
Q ss_pred HHHHHHcCCCCChhHHHHHHHHHHcCCChHHHHHHHccCCCCCcchHHHHHHHHHhcCChhHHHHHHHH
Q 004487 197 HAFVVKTNFVENVFVANALLDLYSKHDCVVEARKLFGEMPEVDGVSYNVMITCYAWNEQYKESLKLFRE 265 (749)
Q Consensus 197 ~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 265 (749)
+..--.. ..+++.|.+...+++-+.+-..+++ |......|...+...|.-++|.+.|-+
T Consensus 819 Y~~~~~~---------e~~~ecly~le~f~~LE~la~~Lpe-~s~llp~~a~mf~svGMC~qAV~a~Lr 877 (1189)
T KOG2041|consen 819 YSYCGDT---------ENQIECLYRLELFGELEVLARTLPE-DSELLPVMADMFTSVGMCDQAVEAYLR 877 (1189)
T ss_pred HHhccch---------HhHHHHHHHHHhhhhHHHHHHhcCc-ccchHHHHHHHHHhhchHHHHHHHHHh
Confidence 5432111 2344555555555555555555554 333444555666666666666665543
No 204
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.49 E-value=0.26 Score=46.30 Aligned_cols=135 Identities=14% Similarity=0.136 Sum_probs=90.7
Q ss_pred HHHHHHHHhCCChhHHHHHHHHHHHCCCCcCHHhHHHHHHHhcccCcHHHHHHHHHHHHHhC-----CCCchhHHHHHHH
Q 004487 345 TAMISAYVQKGNLEEALNLFIEMCRANISADQATFASILRASAELASLSLGKQLHSFVIRSG-----FMSNVFSGSALLD 419 (749)
Q Consensus 345 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~-----~~~~~~~~~~li~ 419 (749)
+.++..+...|.+.-.+.++++.++...+.++...+.+.+.-.+.|+.+.+...++...+.. +.....+......
T Consensus 181 y~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~ 260 (366)
T KOG2796|consen 181 YSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAF 260 (366)
T ss_pred HHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhh
Confidence 45666666677777788888888876656677777778888888888888888888776643 2333333334444
Q ss_pred HHHhcCCHHHHHHHHhhCCC---CCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 004487 420 MYAKSGSLKDAIQTFKEMPE---RNIVSWNALISACAQNGDAQATLKSFEDMVQSGYQPDSVSLL 481 (749)
Q Consensus 420 ~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~ 481 (749)
.|.-++++..|...|++++. .|++.-|.-.-...-.|+..+|++..+.|.. ..|...+-.
T Consensus 261 i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~--~~P~~~l~e 323 (366)
T KOG2796|consen 261 LHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQ--QDPRHYLHE 323 (366)
T ss_pred heecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhc--cCCccchhh
Confidence 56667778888888877764 3444555444444556788888888888887 455554444
No 205
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=96.38 E-value=0.045 Score=54.85 Aligned_cols=84 Identities=8% Similarity=0.143 Sum_probs=73.7
Q ss_pred HHhHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHcCCchhHHHHHHHHHhCCCccCCceeEEEeCC
Q 004487 545 EIMWSSVINSCRIHKNLEFAKKAADQLFKMEKLRDAAPYVAMSNIYAVAGQWESVSQVKKAMRERGVRKVTAYSWVELKS 624 (749)
Q Consensus 545 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~s~~~~~~ 624 (749)
..++..|...|.+.+++..|+...++.++++| +|.-..+.-+.+|...|.++.|...++++.+.
T Consensus 257 ~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~-~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~--------------- 320 (397)
T KOG0543|consen 257 LACHLNLAACYLKLKEYKEAIESCNKVLELDP-NNVKALYRRGQALLALGEYDLARDDFQKALKL--------------- 320 (397)
T ss_pred HHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCC-CchhHHHHHHHHHHhhccHHHHHHHHHHHHHh---------------
Confidence 34667777888999999999999999999999 99999999999999999999999999999764
Q ss_pred EEEEEEeCCCCCcChHHHHHHHHHHHHHHHH
Q 004487 625 KVHVFTANDELHPQTNEIRRKIENLMQEMKK 655 (749)
Q Consensus 625 ~~~~f~~~~~~~~~~~~~~~~l~~l~~~m~~ 655 (749)
.|.+++|...+..+.+++++
T Consensus 321 -----------~P~Nka~~~el~~l~~k~~~ 340 (397)
T KOG0543|consen 321 -----------EPSNKAARAELIKLKQKIRE 340 (397)
T ss_pred -----------CCCcHHHHHHHHHHHHHHHH
Confidence 56778888888888777764
No 206
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=96.38 E-value=0.04 Score=46.24 Aligned_cols=84 Identities=12% Similarity=-0.064 Sum_probs=50.7
Q ss_pred HHHHHcCCHHHHHHHHHhC---CCCCC--HHhHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCC---CchhHHHHHHHHHH
Q 004487 521 DILCRSGCFDEAEKLMAQM---PFEPD--EIMWSSVINSCRIHKNLEFAKKAADQLFKMEKLR---DAAPYVAMSNIYAV 592 (749)
Q Consensus 521 ~~~~~~g~~~~A~~~~~~~---~~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~ 592 (749)
.++-..|+.++|+.++++. +.... ...+-.+.+.++..|++++|+.++++.....| . +......++-++..
T Consensus 9 ~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p-~~~~~~~l~~f~Al~L~~ 87 (120)
T PF12688_consen 9 WAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFP-DDELNAALRVFLALALYN 87 (120)
T ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCC-CccccHHHHHHHHHHHHH
Confidence 3445556666666666554 22111 23444556667777777777777777776655 4 44455556667777
Q ss_pred cCCchhHHHHHHH
Q 004487 593 AGQWESVSQVKKA 605 (749)
Q Consensus 593 ~g~~~~a~~~~~~ 605 (749)
.|++++|.+.+-.
T Consensus 88 ~gr~~eAl~~~l~ 100 (120)
T PF12688_consen 88 LGRPKEALEWLLE 100 (120)
T ss_pred CCCHHHHHHHHHH
Confidence 7777777776544
No 207
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.30 E-value=2.4 Score=46.85 Aligned_cols=116 Identities=13% Similarity=0.090 Sum_probs=78.3
Q ss_pred HHHHHHHcCCChHHHHHHHhcCCCCCcchHHHHHH----HHHcCCChhHHHHHHHHhHhcCCCCCCcchHHHHHHhcCCC
Q 004487 11 MLISGYVKSGNLATARELFNSMVDRTAVSWTILIG----GYSQKNQFREAFKLFVDMRTDGGSDPDYVTFATLLSGCSEP 86 (749)
Q Consensus 11 ~ll~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~----~~~~~g~~~~a~~l~~~m~~~~g~~p~~~~~~~ll~~~~~~ 86 (749)
.-|+++.+...++-|..+-..-..+ ...-..+.+ -+.+.|++++|..-|-+-... +.| ..+++-+...
T Consensus 339 ~kL~iL~kK~ly~~Ai~LAk~~~~d-~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~--le~-----s~Vi~kfLda 410 (933)
T KOG2114|consen 339 TKLDILFKKNLYKVAINLAKSQHLD-EDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF--LEP-----SEVIKKFLDA 410 (933)
T ss_pred HHHHHHHHhhhHHHHHHHHHhcCCC-HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc--CCh-----HHHHHHhcCH
Confidence 3466777777777787777654432 222233333 345789999998877665432 333 2345555666
Q ss_pred CChHHHHHHHHHHHHhCCCCchhHHHHHHHHhHcCCChhHHHHHHccCC
Q 004487 87 DTANELIQVHADIIKFGYNSILIICNSLVDSYCKIRCLDLARRVFKEMP 135 (749)
Q Consensus 87 ~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 135 (749)
.........++.+.+.|+. +...-+.|+..|.+.++.+.-.++.+...
T Consensus 411 q~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~efI~~~~ 458 (933)
T KOG2114|consen 411 QRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLTEFISKCD 458 (933)
T ss_pred HHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHHHHHhcCC
Confidence 6777777788888888875 44555788999999999998888887766
No 208
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=96.29 E-value=0.031 Score=54.55 Aligned_cols=56 Identities=11% Similarity=-0.050 Sum_probs=25.6
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhcCCCCC---CchhHHHHHHHHHHcCCchhHHHHHHHHH
Q 004487 551 VINSCRIHKNLEFAKKAADQLFKMEKLR---DAAPYVAMSNIYAVAGQWESVSQVKKAMR 607 (749)
Q Consensus 551 ll~~~~~~g~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 607 (749)
+...+...|++++|...|+++++..| . .+..+..++.+|...|++++|.++++...
T Consensus 186 LG~~y~~~g~~~~A~~~f~~vv~~yP-~s~~~~dAl~klg~~~~~~g~~~~A~~~~~~vi 244 (263)
T PRK10803 186 LGQLNYNKGKKDDAAYYFASVVKNYP-KSPKAADAMFKVGVIMQDKGDTAKAKAVYQQVI 244 (263)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCC-CCcchhHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 33444444555555555555544444 2 12333334444445555555555554443
No 209
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=96.18 E-value=0.021 Score=58.62 Aligned_cols=63 Identities=6% Similarity=-0.080 Sum_probs=30.2
Q ss_pred HHhHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCch---hHHHHHHHHHHcCCchhHHHHHHHHHh
Q 004487 545 EIMWSSVINSCRIHKNLEFAKKAADQLFKMEKLRDAA---PYVAMSNIYAVAGQWESVSQVKKAMRE 608 (749)
Q Consensus 545 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~---~~~~l~~~~~~~g~~~~a~~~~~~m~~ 608 (749)
...|+.+..+|...|++++|+..|+++++++| .+.. +|..++.+|...|+.++|...+++..+
T Consensus 75 a~a~~NLG~AL~~lGryeEAIa~f~rALeL~P-d~aeA~~A~yNLAcaya~LGr~dEAla~LrrALe 140 (453)
T PLN03098 75 AEDAVNLGLSLFSKGRVKDALAQFETALELNP-NPDEAQAAYYNKACCHAYREEGKKAADCLRTALR 140 (453)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC-CchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34444444445555555555555555555544 3332 244455555555555555554444443
No 210
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.15 E-value=0.14 Score=48.03 Aligned_cols=170 Identities=9% Similarity=0.005 Sum_probs=105.7
Q ss_pred hHHHHHHHHcCCChHHHHHHHhcCCCC--C--------cchHHHHHHHHHcCCChhHHHHHHHHhHhcCCCCCCcchHHH
Q 004487 9 TNMLISGYVKSGNLATARELFNSMVDR--T--------AVSWTILIGGYSQKNQFREAFKLFVDMRTDGGSDPDYVTFAT 78 (749)
Q Consensus 9 ~~~ll~~~~~~g~~~~A~~~f~~~~~~--~--------~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~g~~p~~~~~~~ 78 (749)
+++|++.+.-..-+++-...|+.-..| . ...-+.++..+.-.|.+.-...++.+..+. ..+.++.....
T Consensus 139 qesLdRl~~L~~~V~~ii~~~e~~~~~ESsv~lW~KRl~~Vmy~~~~~llG~kEy~iS~d~~~~vi~~-~~e~~p~L~s~ 217 (366)
T KOG2796|consen 139 QESLDRLHKLKTVVSKILANLEQGLAEESSIRLWRKRLGRVMYSMANCLLGMKEYVLSVDAYHSVIKY-YPEQEPQLLSG 217 (366)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHhcchhhhhhHHHHHHHHHh-CCcccHHHHHH
Confidence 566666665555555555555544332 1 123356777777778888888888887775 44556666666
Q ss_pred HHHhcCCCCChHHHHHHHHHHHHhCCCCc-----hhHHHHHHHHhHcCCChhHHHHHHccCCCC---CcchHHHHHHHHH
Q 004487 79 LLSGCSEPDTANELIQVHADIIKFGYNSI-----LIICNSLVDSYCKIRCLDLARRVFKEMPQK---DSVSFNALITGFA 150 (749)
Q Consensus 79 ll~~~~~~~~~~~a~~~~~~~~~~g~~~~-----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---~~~~~~~li~~~~ 150 (749)
|.+.-.+.||.+.+...++.+.+..-..| ..+.......|.-..++..|.+.|+++++. |.+.-|.-.-+..
T Consensus 218 Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcll 297 (366)
T KOG2796|consen 218 LGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLL 297 (366)
T ss_pred HHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHH
Confidence 66777778888888888887776533333 333333344455567778888888777763 4444444444444
Q ss_pred hCCChhHHHHHHHHHHHCCCCCChhhHHHHH
Q 004487 151 KEGLNEEAIKLFVEMQHLGFKPSDFTFAAAL 181 (749)
Q Consensus 151 ~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll 181 (749)
-.|+...|++..+.|.+. .|...+-++++
T Consensus 298 Ylg~l~DAiK~~e~~~~~--~P~~~l~es~~ 326 (366)
T KOG2796|consen 298 YLGKLKDALKQLEAMVQQ--DPRHYLHESVL 326 (366)
T ss_pred HHHHHHHHHHHHHHHhcc--CCccchhhhHH
Confidence 567888888888888764 45555444443
No 211
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=96.04 E-value=2.1 Score=43.83 Aligned_cols=188 Identities=12% Similarity=0.112 Sum_probs=106.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhhCC--CCCcc-------hHHHHHHHHH----hcCCHHHHHHHHHHHHHCCCCCCHHH
Q 004487 413 SGSALLDMYAKSGSLKDAIQTFKEMP--ERNIV-------SWNALISACA----QNGDAQATLKSFEDMVQSGYQPDSVS 479 (749)
Q Consensus 413 ~~~~li~~y~~~g~~~~A~~~~~~~~--~~~~~-------~~~~li~~~~----~~g~~~~A~~~~~~m~~~g~~p~~~t 479 (749)
.+..++....+.++...|.+.+.-+. +|+.. +-..+-+..+ .+-+..+=+.+|++.....+.-..-.
T Consensus 300 ~F~~~Ls~~Vk~~~T~~a~q~l~lL~~ldp~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~DiDrqQLv 379 (549)
T PF07079_consen 300 RFGNLLSFKVKQVQTEEAKQYLALLKILDPRISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSYDIDRQQLV 379 (549)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHhcCCcchhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhcccHHHHH
Confidence 34455555566666666666555443 23221 0011111111 12233444566666666433221111
Q ss_pred HHHHHH--HHhccCC-HHHHHHHHHHhHHhcCCCC-ChHHHHHHHHHHHHc--------C---CHHHHHHHHHhCCCCC-
Q 004487 480 LLSVLS--ACSHCGL-IEEGLQYFNSMTQKYKLRP-KKEHYASMVDILCRS--------G---CFDEAEKLMAQMPFEP- 543 (749)
Q Consensus 480 ~~~ll~--a~~~~g~-~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~--------g---~~~~A~~~~~~~~~~p- 543 (749)
...+-. -+-+.|. -++|+++++.+.+ +.| |.+.-| .+-.+.+. . ++-+-+.++++.++.|
T Consensus 380 h~L~~~Ak~lW~~g~~dekalnLLk~il~---ft~yD~ec~n-~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i 455 (549)
T PF07079_consen 380 HYLVFGAKHLWEIGQCDEKALNLLKLILQ---FTNYDIECEN-IVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPI 455 (549)
T ss_pred HHHHHHHHHHHhcCCccHHHHHHHHHHHH---hccccHHHHH-HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcc
Confidence 111111 2444554 7778888877763 333 222222 22211111 1 1123344566666655
Q ss_pred ---CHHhHHHHHHH--HHhcCCHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHcCCchhHHHHHHHH
Q 004487 544 ---DEIMWSSVINS--CRIHKNLEFAKKAADQLFKMEKLRDAAPYVAMSNIYAVAGQWESVSQVKKAM 606 (749)
Q Consensus 544 ---~~~~~~~ll~~--~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 606 (749)
+...-|.|..| ...+|++.++.-...=+.+..| ++.+|..++-+.....++++|..++..+
T Consensus 456 ~i~e~eian~LaDAEyLysqgey~kc~~ys~WL~~iaP--S~~~~RLlGl~l~e~k~Y~eA~~~l~~L 521 (549)
T PF07079_consen 456 TISEEEIANFLADAEYLYSQGEYHKCYLYSSWLTKIAP--SPQAYRLLGLCLMENKRYQEAWEYLQKL 521 (549)
T ss_pred cccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCC--cHHHHHHHHHHHHHHhhHHHHHHHHHhC
Confidence 35566777777 4789999999988888888988 9999999999999999999999999865
No 212
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=96.02 E-value=0.35 Score=46.85 Aligned_cols=172 Identities=15% Similarity=0.145 Sum_probs=99.7
Q ss_pred HHHHHHHhcCCHHHHHHHHhhCCC--CCcc-hH---HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH--HHHHHHHHHH
Q 004487 416 ALLDMYAKSGSLKDAIQTFKEMPE--RNIV-SW---NALISACAQNGDAQATLKSFEDMVQSGYQPDS--VSLLSVLSAC 487 (749)
Q Consensus 416 ~li~~y~~~g~~~~A~~~~~~~~~--~~~~-~~---~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~t~~~ll~a~ 487 (749)
.....+.+.|++++|.+.|+.+.. |+.. .- -.+..+|.+.+++++|...|++..+. .|+. ..+...+.+.
T Consensus 37 ~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~--~P~~~~~~~a~Y~~g~ 114 (243)
T PRK10866 37 ATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRL--NPTHPNIDYVLYMRGL 114 (243)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CcCCCchHHHHHHHHH
Confidence 344555667888888888887763 2221 11 23456667788888888888888773 3432 2333333333
Q ss_pred hc--cC---------------C---HHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHHh
Q 004487 488 SH--CG---------------L---IEEGLQYFNSMTQKYKLRPKKEHYASMVDILCRSGCFDEAEKLMAQMPFEPDEIM 547 (749)
Q Consensus 488 ~~--~g---------------~---~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~ 547 (749)
+. .+ + ..+|.+.|+.+.++| |+. .-..+|.+.+..+...--..-
T Consensus 115 ~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~y---P~S-------------~ya~~A~~rl~~l~~~la~~e 178 (243)
T PRK10866 115 TNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGY---PNS-------------QYTTDATKRLVFLKDRLAKYE 178 (243)
T ss_pred hhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHC---cCC-------------hhHHHHHHHHHHHHHHHHHHH
Confidence 21 10 1 223444555554432 332 222333333322210000000
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhcCCCCC---CchhHHHHHHHHHHcCCchhHHHHHHHHH
Q 004487 548 WSSVINSCRIHKNLEFAKKAADQLFKMEKLR---DAAPYVAMSNIYAVAGQWESVSQVKKAMR 607 (749)
Q Consensus 548 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 607 (749)
-....-|.+.|.+.-|..-++.+++.-| . ...+...+..+|...|..++|.++...+.
T Consensus 179 -~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp-~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~ 239 (243)
T PRK10866 179 -LSVAEYYTKRGAYVAVVNRVEQMLRDYP-DTQATRDALPLMENAYRQLQLNAQADKVAKIIA 239 (243)
T ss_pred -HHHHHHHHHcCchHHHHHHHHHHHHHCC-CCchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence 0233447788999999999999998777 4 34567788899999999999999887664
No 213
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=96.02 E-value=1.9 Score=43.05 Aligned_cols=95 Identities=8% Similarity=0.095 Sum_probs=55.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-----CCHH-HHHHHHHHHhccCCHHHHHHHHHHhHHhc-CCCCC--hHH
Q 004487 445 WNALISACAQNGDAQATLKSFEDMVQSGYQ-----PDSV-SLLSVLSACSHCGLIEEGLQYFNSMTQKY-KLRPK--KEH 515 (749)
Q Consensus 445 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-----p~~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~~-~~~p~--~~~ 515 (749)
+..+...+.+.|++++|+++|++....-.. ++.. .|...+-++...|++..|.+.|+...... ++..+ ...
T Consensus 158 ~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~ 237 (282)
T PF14938_consen 158 LLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKF 237 (282)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHH
Confidence 344667788888999999999888764322 1222 23333445667888999999888876321 22223 234
Q ss_pred HHHHHHHHHH--cCCHHHHHHHHHhC
Q 004487 516 YASMVDILCR--SGCFDEAEKLMAQM 539 (749)
Q Consensus 516 ~~~li~~~~~--~g~~~~A~~~~~~~ 539 (749)
...|++++-. ...+++|..-|+++
T Consensus 238 ~~~l~~A~~~~D~e~f~~av~~~d~~ 263 (282)
T PF14938_consen 238 LEDLLEAYEEGDVEAFTEAVAEYDSI 263 (282)
T ss_dssp HHHHHHHHHTT-CCCHHHHCHHHTTS
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHccc
Confidence 4555666543 23455666666666
No 214
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=95.96 E-value=0.014 Score=39.06 Aligned_cols=42 Identities=12% Similarity=0.276 Sum_probs=36.3
Q ss_pred HhHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCchhHHHHHH
Q 004487 546 IMWSSVINSCRIHKNLEFAKKAADQLFKMEKLRDAAPYVAMSN 588 (749)
Q Consensus 546 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 588 (749)
.+|..+..++...|+.++|++.++++++..| .|+..+..|+.
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P-~~~~a~~~La~ 43 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDP-DDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc-CCHHHHHHhhh
Confidence 3677888899999999999999999999999 88888877764
No 215
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=95.95 E-value=0.087 Score=44.71 Aligned_cols=47 Identities=19% Similarity=0.292 Sum_probs=25.1
Q ss_pred CCCChHHHHHHHHHHHHcCCHHHHHHHHHhC----CCCCCHHhHHHHHHHH
Q 004487 509 LRPKKEHYASMVDILCRSGCFDEAEKLMAQM----PFEPDEIMWSSVINSC 555 (749)
Q Consensus 509 ~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~----~~~p~~~~~~~ll~~~ 555 (749)
+.|+..+..+++.+|+..|++..|+++++.. +++-+..+|..|+.-+
T Consensus 48 l~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~ 98 (126)
T PF12921_consen 48 LYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWA 98 (126)
T ss_pred CCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 3455555555555555555555555555444 3333455555555543
No 216
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=95.92 E-value=0.026 Score=42.77 Aligned_cols=62 Identities=15% Similarity=0.252 Sum_probs=46.8
Q ss_pred HHHHHcCCHHHHHHHHHhC-CCCC-CHHhHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCchhH
Q 004487 521 DILCRSGCFDEAEKLMAQM-PFEP-DEIMWSSVINSCRIHKNLEFAKKAADQLFKMEKLRDAAPY 583 (749)
Q Consensus 521 ~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 583 (749)
.+|.+.+++++|.+.++++ ...| +...|......+...|++++|...++++++..| .+....
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p-~~~~~~ 66 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSP-DDPDAR 66 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCC-CcHHHH
Confidence 4677788888888888877 4445 466677777778888888888888888888888 555443
No 217
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=95.87 E-value=0.092 Score=51.26 Aligned_cols=26 Identities=19% Similarity=-0.038 Sum_probs=16.2
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhcCCC
Q 004487 551 VINSCRIHKNLEFAKKAADQLFKMEK 576 (749)
Q Consensus 551 ll~~~~~~g~~~~a~~~~~~~~~~~~ 576 (749)
+...+...|+.+.|...++++++..|
T Consensus 223 lg~~~~~~g~~~~A~~~~~~vi~~yP 248 (263)
T PRK10803 223 VGVIMQDKGDTAKAKAVYQQVIKKYP 248 (263)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCc
Confidence 34445556666666666666666666
No 218
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=95.82 E-value=0.1 Score=44.23 Aligned_cols=99 Identities=17% Similarity=0.187 Sum_probs=70.8
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcc
Q 004487 411 VFSGSALLDMYAKSGSLKDAIQTFKEMPERNIVSWNALISACAQNGDAQATLKSFEDMVQSGYQPDSVSLLSVLSACSHC 490 (749)
Q Consensus 411 ~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~ 490 (749)
..++.+++-++++.|+++....+++..=..|+. +-...+. --......|+..+..+++.+|+..
T Consensus 2 e~~~~~ii~al~r~g~~~~i~~~i~~~WgI~~~-------~~~~~~~---------~~~~spl~Pt~~lL~AIv~sf~~n 65 (126)
T PF12921_consen 2 EELLCNIIYALGRSGQLDSIKSYIKSVWGIDVN-------GKKKEGD---------YPPSSPLYPTSRLLIAIVHSFGYN 65 (126)
T ss_pred hHHHHHHHHHHhhcCCHHHHHHHHHHhcCCCCC-------CccccCc---------cCCCCCCCCCHHHHHHHHHHHHhc
Confidence 456677777788888887777777654322111 0011111 112234789999999999999999
Q ss_pred CCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHH
Q 004487 491 GLIEEGLQYFNSMTQKYKLRPKKEHYASMVDILCR 525 (749)
Q Consensus 491 g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~ 525 (749)
|++..|+++.+...+.|+++-+...|..|+.-...
T Consensus 66 ~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~~v 100 (126)
T PF12921_consen 66 GDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWAYV 100 (126)
T ss_pred ccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Confidence 99999999999999999988888899888764433
No 219
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=95.76 E-value=0.14 Score=45.36 Aligned_cols=61 Identities=13% Similarity=0.152 Sum_probs=52.4
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHcCCchhHHHHHHHHHh
Q 004487 547 MWSSVINSCRIHKNLEFAKKAADQLFKMEKLRDAAPYVAMSNIYAVAGQWESVSQVKKAMRE 608 (749)
Q Consensus 547 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 608 (749)
+...++..+...|+.+.|...+++++..+| .+...|..++.+|...|+..+|.++++.++.
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP-~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~ 124 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALDP-YDEEAYRLLMRALAAQGRRAEALRVYERYRR 124 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHST-T-HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 455677778889999999999999999999 9999999999999999999999999988743
No 220
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=95.69 E-value=3 Score=42.82 Aligned_cols=199 Identities=18% Similarity=0.148 Sum_probs=104.0
Q ss_pred ccHHHHHHHHHhCCChhHHHHHHHHHHHCCCCcCHH----------hHHHHHHHhcccCcHHHH---HHHHHHHHHhCCC
Q 004487 342 VPWTAMISAYVQKGNLEEALNLFIEMCRANISADQA----------TFASILRASAELASLSLG---KQLHSFVIRSGFM 408 (749)
Q Consensus 342 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~----------t~~~ll~~~~~~~~~~~a---~~~~~~~~~~~~~ 408 (749)
.++..++....+.++..+|-+.+.-+.- +.|+.. ++..++ |....++..- ..++..+...++.
T Consensus 299 ~~F~~~Ls~~Vk~~~T~~a~q~l~lL~~--ldp~~svs~Kllls~~~lq~Iv--~~DD~~~Tklr~yL~lwe~~qs~DiD 374 (549)
T PF07079_consen 299 DRFGNLLSFKVKQVQTEEAKQYLALLKI--LDPRISVSEKLLLSPKVLQDIV--CEDDESYTKLRDYLNLWEEIQSYDID 374 (549)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHh--cCCcchhhhhhhcCHHHHHHHH--hcchHHHHHHHHHHHHHHHHHhhccc
Confidence 3477777888888888888877766544 233322 111111 1111111111 2233333333222
Q ss_pred CchhHHHHHH---HHHHhcCC-HHHHHHHHhhCCC---CCcchHHHHH----HHHHhc---CCHHHHHHHHHHHHHCCCC
Q 004487 409 SNVFSGSALL---DMYAKSGS-LKDAIQTFKEMPE---RNIVSWNALI----SACAQN---GDAQATLKSFEDMVQSGYQ 474 (749)
Q Consensus 409 ~~~~~~~~li---~~y~~~g~-~~~A~~~~~~~~~---~~~~~~~~li----~~~~~~---g~~~~A~~~~~~m~~~g~~ 474 (749)
.- ....-|+ .-+-+.|. -++|.++++.+.+ -|..+-|... .+|.+. .....-+.+-+-..+.|+.
T Consensus 375 rq-QLvh~L~~~Ak~lW~~g~~dekalnLLk~il~ft~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~ 453 (549)
T PF07079_consen 375 RQ-QLVHYLVFGAKHLWEIGQCDEKALNLLKLILQFTNYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLT 453 (549)
T ss_pred HH-HHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCC
Confidence 11 1111111 22233344 6777777776652 3444444322 223221 2233334444445566776
Q ss_pred CCHH----HHHHHHHH--HhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHHhH
Q 004487 475 PDSV----SLLSVLSA--CSHCGLIEEGLQYFNSMTQKYKLRPKKEHYASMVDILCRSGCFDEAEKLMAQMPFEPDEIMW 548 (749)
Q Consensus 475 p~~~----t~~~ll~a--~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~ 548 (749)
|-.+ .-+.|..| ....|++.++.-+-..+. .+.|++.+|.-+.-.+....+++||.+++...| |+..+|
T Consensus 454 ~i~i~e~eian~LaDAEyLysqgey~kc~~ys~WL~---~iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~LP--~n~~~~ 528 (549)
T PF07079_consen 454 PITISEEEIANFLADAEYLYSQGEYHKCYLYSSWLT---KIAPSPQAYRLLGLCLMENKRYQEAWEYLQKLP--PNERMR 528 (549)
T ss_pred cccccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHH---HhCCcHHHHHHHHHHHHHHhhHHHHHHHHHhCC--CchhhH
Confidence 6433 23333333 445678888776665554 478888888888777788888888888888875 466666
Q ss_pred HH
Q 004487 549 SS 550 (749)
Q Consensus 549 ~~ 550 (749)
++
T Consensus 529 ds 530 (549)
T PF07079_consen 529 DS 530 (549)
T ss_pred HH
Confidence 54
No 221
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=95.49 E-value=0.13 Score=42.49 Aligned_cols=88 Identities=17% Similarity=0.253 Sum_probs=68.6
Q ss_pred HHHHcCCHHHHHHHHHhC-CCCC-CHHhHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCC----chhHHHHHHHHHHcCC
Q 004487 522 ILCRSGCFDEAEKLMAQM-PFEP-DEIMWSSVINSCRIHKNLEFAKKAADQLFKMEKLRD----AAPYVAMSNIYAVAGQ 595 (749)
Q Consensus 522 ~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~ 595 (749)
++...|+++.|++.|.+. .+-| .+..||.-..+++-.|+.++|..-+++++++.. +. ...|+.-+.+|...|+
T Consensus 52 alaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag-~~trtacqa~vQRg~lyRl~g~ 130 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAG-DQTRTACQAFVQRGLLYRLLGN 130 (175)
T ss_pred HHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHHHhCc
Confidence 566778888888888776 3333 577888888888999999999999999888754 32 3457788888999999
Q ss_pred chhHHHHHHHHHhCC
Q 004487 596 WESVSQVKKAMRERG 610 (749)
Q Consensus 596 ~~~a~~~~~~m~~~g 610 (749)
-++|..-|+..-+.|
T Consensus 131 dd~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 131 DDAARADFEAAAQLG 145 (175)
T ss_pred hHHHHHhHHHHHHhC
Confidence 999988888876665
No 222
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=95.47 E-value=0.023 Score=43.83 Aligned_cols=62 Identities=10% Similarity=0.085 Sum_probs=41.7
Q ss_pred HhHHHHHHHHHhcCCHHHHHHHHHHHhcC----CCC--CCchhHHHHHHHHHHcCCchhHHHHHHHHH
Q 004487 546 IMWSSVINSCRIHKNLEFAKKAADQLFKM----EKL--RDAAPYVAMSNIYAVAGQWESVSQVKKAMR 607 (749)
Q Consensus 546 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~----~~~--~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 607 (749)
.+++.+...+...|++++|+..+++++++ ++. .-..++..++.+|...|++++|.+++++..
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al 73 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKAL 73 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 45666666677777777777777776643 210 124567788888888888888888887754
No 223
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=95.47 E-value=0.021 Score=44.10 Aligned_cols=29 Identities=7% Similarity=-0.101 Sum_probs=18.7
Q ss_pred HHhHHHHHHHHHhcCCHHHHHHHHHHHhc
Q 004487 545 EIMWSSVINSCRIHKNLEFAKKAADQLFK 573 (749)
Q Consensus 545 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 573 (749)
..++..+...+...|++++|+..+++.++
T Consensus 46 a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 46 ANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 34555666666677777777777766654
No 224
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=95.07 E-value=2.6 Score=42.46 Aligned_cols=154 Identities=10% Similarity=-0.024 Sum_probs=92.3
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHH----HHCCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHhHHh---cC-CCCChH
Q 004487 444 SWNALISACAQNGDAQATLKSFEDM----VQSGYQP-DSVSLLSVLSACSHCGLIEEGLQYFNSMTQK---YK-LRPKKE 514 (749)
Q Consensus 444 ~~~~li~~~~~~g~~~~A~~~~~~m----~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~---~~-~~p~~~ 514 (749)
.|..|-+.|.-.|+++.|+..-+.= ++-|-+. ....+..+.+++.-.|+++.|.++++....- .| -.....
T Consensus 197 a~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQ 276 (639)
T KOG1130|consen 197 AYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQ 276 (639)
T ss_pred hhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHH
Confidence 4555556666677888887665432 2223222 2236677777888888888888887654321 01 111233
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHhC-------C-CCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHhcCC-----CCCCch
Q 004487 515 HYASMVDILCRSGCFDEAEKLMAQM-------P-FEPDEIMWSSVINSCRIHKNLEFAKKAADQLFKME-----KLRDAA 581 (749)
Q Consensus 515 ~~~~li~~~~~~g~~~~A~~~~~~~-------~-~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~-----~~~~~~ 581 (749)
..-+|...|.-..++++|+.++.+- + ..-....+-+|..++...|+.++|..+.+..++.. +.....
T Consensus 277 scYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~~s~ev~D~sgelT 356 (639)
T KOG1130|consen 277 SCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLRSSLEVNDTSGELT 356 (639)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhCCcchhhh
Confidence 4445677777777788888776553 1 11134566678888888899999888887766532 211233
Q ss_pred hHHHHHHHHHHcCCch
Q 004487 582 PYVAMSNIYAVAGQWE 597 (749)
Q Consensus 582 ~~~~l~~~~~~~g~~~ 597 (749)
.-..|++.-...|.-+
T Consensus 357 ar~Nlsdl~~~lG~~d 372 (639)
T KOG1130|consen 357 ARDNLSDLILELGQED 372 (639)
T ss_pred hhhhhHHHHHHhCCCc
Confidence 4455666666666544
No 225
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=95.06 E-value=3.3 Score=39.42 Aligned_cols=194 Identities=16% Similarity=0.141 Sum_probs=127.6
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHhhCC-----CCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 004487 411 VFSGSALLDMYAKSGSLKDAIQTFKEMP-----ERNIVSWNALISACAQNGDAQATLKSFEDMVQSGYQPDSVSLLSVLS 485 (749)
Q Consensus 411 ~~~~~~li~~y~~~g~~~~A~~~~~~~~-----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~ 485 (749)
..........+...+.+..+...+.... ......+..+...+...+++..+.+.+.........+. ........
T Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 137 (291)
T COG0457 59 AGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPD-LAEALLAL 137 (291)
T ss_pred hHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcc-hHHHHHHH
Confidence 4555666667777777777777766543 23344555566666677777888888887776433331 12222222
Q ss_pred -HHhccCCHHHHHHHHHHhHHhcCCCC----ChHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC--HHhHHHHHHHHHh
Q 004487 486 -ACSHCGLIEEGLQYFNSMTQKYKLRP----KKEHYASMVDILCRSGCFDEAEKLMAQM-PFEPD--EIMWSSVINSCRI 557 (749)
Q Consensus 486 -a~~~~g~~~~a~~~~~~m~~~~~~~p----~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~--~~~~~~ll~~~~~ 557 (749)
++...|+++.+...+..... ..| ....+......+...++.++|...+.+. ...|+ ...+..+...+..
T Consensus 138 ~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (291)
T COG0457 138 GALYELGDYEEALELYEKALE---LDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLK 214 (291)
T ss_pred HHHHHcCCHHHHHHHHHHHHh---cCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHH
Confidence 67788888888888887743 233 2333444444466778888888888777 33333 5667777777888
Q ss_pred cCCHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHcCCchhHHHHHHHHHhC
Q 004487 558 HKNLEFAKKAADQLFKMEKLRDAAPYVAMSNIYAVAGQWESVSQVKKAMRER 609 (749)
Q Consensus 558 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 609 (749)
.++.+.|...+.......| .....+..+...+...|.++++...+......
T Consensus 215 ~~~~~~a~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (291)
T COG0457 215 LGKYEEALEYYEKALELDP-DNAEALYNLALLLLELGRYEEALEALEKALEL 265 (291)
T ss_pred cccHHHHHHHHHHHHhhCc-ccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 8888888888888888887 55566667777777777788888777776554
No 226
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=95.01 E-value=0.5 Score=48.94 Aligned_cols=197 Identities=12% Similarity=0.103 Sum_probs=108.2
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHHcCCHHH
Q 004487 452 CAQNGDAQATLKSFEDMVQSGYQPDSVSLLSVLSACSHCGLIEEGLQYFNSMTQKYKLRPKKEHYASMVDILCRSGCFDE 531 (749)
Q Consensus 452 ~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~ 531 (749)
.-+..+.+.-+++-++..+ +.||-.+-..++ +-..+..+.++.+++++..+. + ...+..- ......|..
T Consensus 178 AWRERnp~aRIkaA~eALe--i~pdCAdAYILL-AEEeA~Ti~Eae~l~rqAvkA-g----E~~lg~s-~~~~~~g~~-- 246 (539)
T PF04184_consen 178 AWRERNPQARIKAAKEALE--INPDCADAYILL-AEEEASTIVEAEELLRQAVKA-G----EASLGKS-QFLQHHGHF-- 246 (539)
T ss_pred HHhcCCHHHHHHHHHHHHH--hhhhhhHHHhhc-ccccccCHHHHHHHHHHHHHH-H----HHhhchh-hhhhcccch--
Confidence 3445666777777777777 677765444433 333455678888888776542 1 0000000 000011111
Q ss_pred HHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHhcCCCC-CCchhHHHHHHHHHHcCCchhHHHHHHHHHhCC
Q 004487 532 AEKLMAQMPFEPDEIMWSSVINSCRIHKNLEFAKKAADQLFKMEKL-RDAAPYVAMSNIYAVAGQWESVSQVKKAMRERG 610 (749)
Q Consensus 532 A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 610 (749)
.+.+.+-...|-..+=..|...+++.|..++|++.++++++..|. ++-.....|+..+...+++.++..++.+-.+..
T Consensus 247 -~e~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~ 325 (539)
T PF04184_consen 247 -WEAWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDIS 325 (539)
T ss_pred -hhhhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhcccc
Confidence 111111111222333345666778889999999999999887663 245678889999999999999999998876544
Q ss_pred CccCCceeEEEeCCEEEEEEeCCCCCcCh-------HHHHHHHHHHHHHHHHcCCcCCC
Q 004487 611 VRKVTAYSWVELKSKVHVFTANDELHPQT-------NEIRRKIENLMQEMKKEGYKPDT 662 (749)
Q Consensus 611 ~~~~~~~s~~~~~~~~~~f~~~~~~~~~~-------~~~~~~l~~l~~~m~~~g~~pd~ 662 (749)
.++....+|..- -+.....+|+..|.. ......++.+.+-++-..++|+-
T Consensus 326 lpkSAti~YTaA--LLkaRav~d~fs~e~a~rRGls~ae~~aveAi~RAvefNPHVp~Y 382 (539)
T PF04184_consen 326 LPKSATICYTAA--LLKARAVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNPHVPKY 382 (539)
T ss_pred CCchHHHHHHHH--HHHHHhhccccCchhhhhcCCChhHHHHHHHHHHHHHhCCCCchh
Confidence 444333333210 000111233333321 12223455677777777777763
No 227
>PRK11906 transcriptional regulator; Provisional
Probab=94.99 E-value=1.9 Score=44.86 Aligned_cols=157 Identities=12% Similarity=0.100 Sum_probs=99.3
Q ss_pred chH--HHHHHHHHhc-----CCHHHHHHHHHHHHH-CCCCCCHH-HHHHHHHHHhc---------cCCHHHHHHHHHHhH
Q 004487 443 VSW--NALISACAQN-----GDAQATLKSFEDMVQ-SGYQPDSV-SLLSVLSACSH---------CGLIEEGLQYFNSMT 504 (749)
Q Consensus 443 ~~~--~~li~~~~~~-----g~~~~A~~~~~~m~~-~g~~p~~~-t~~~ll~a~~~---------~g~~~~a~~~~~~m~ 504 (749)
..| ..++.|.... -..+.|+.+|.+... +.+.|+.. .|..+..++.. .....+|.++-+...
T Consensus 252 ~a~~~d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAv 331 (458)
T PRK11906 252 NHYLSDEMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVS 331 (458)
T ss_pred cchhhHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHH
Confidence 456 5555554441 135678888998882 22667654 44333332211 234456666665555
Q ss_pred HhcCCCC-ChHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC-HHhHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCch
Q 004487 505 QKYKLRP-KKEHYASMVDILCRSGCFDEAEKLMAQM-PFEPD-EIMWSSVINSCRIHKNLEFAKKAADQLFKMEKLRDAA 581 (749)
Q Consensus 505 ~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 581 (749)
+ +.| |......+..++.-.|+++.|..+|++. ...|| +.+|-.....+...|+.++|.+.+++.++++| ....
T Consensus 332 e---ld~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP-~~~~ 407 (458)
T PRK11906 332 D---ITTVDGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEP-RRRK 407 (458)
T ss_pred h---cCCCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCc-hhhH
Confidence 3 344 5556666677777788899999999988 66776 66676666677788999999999999999999 4433
Q ss_pred hHH--HHHHHHHHcCCchhHHHHHH
Q 004487 582 PYV--AMSNIYAVAGQWESVSQVKK 604 (749)
Q Consensus 582 ~~~--~l~~~~~~~g~~~~a~~~~~ 604 (749)
.-. ..++.|+..+ .++|.+++-
T Consensus 408 ~~~~~~~~~~~~~~~-~~~~~~~~~ 431 (458)
T PRK11906 408 AVVIKECVDMYVPNP-LKNNIKLYY 431 (458)
T ss_pred HHHHHHHHHHHcCCc-hhhhHHHHh
Confidence 322 3333565554 466666654
No 228
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=94.95 E-value=6.3 Score=42.15 Aligned_cols=182 Identities=10% Similarity=0.107 Sum_probs=122.9
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHhhCCCCC---cchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 004487 410 NVFSGSALLDMYAKSGSLKDAIQTFKEMPERN---IVSWNALISACAQNGDAQATLKSFEDMVQSGYQPDSVSLLSVLSA 486 (749)
Q Consensus 410 ~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a 486 (749)
+..+|..-++.-.+.|+.+.+.-.|+...-|- ...|--.+.-....|+.+-|..++....+--++-...+...-..-
T Consensus 296 ql~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f 375 (577)
T KOG1258|consen 296 QLKNWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEARF 375 (577)
T ss_pred HHHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHH
Confidence 45677777787888899988888888876432 234555555445558888887777665553232222232222233
Q ss_pred HhccCCHHHHHHHHHHhHHhcCCCCCh-HHHHHHHHHHHHcCCHHHHH---HHHHhC-CCCCCHHhHHHHHH-----HHH
Q 004487 487 CSHCGLIEEGLQYFNSMTQKYKLRPKK-EHYASMVDILCRSGCFDEAE---KLMAQM-PFEPDEIMWSSVIN-----SCR 556 (749)
Q Consensus 487 ~~~~g~~~~a~~~~~~m~~~~~~~p~~-~~~~~li~~~~~~g~~~~A~---~~~~~~-~~~p~~~~~~~ll~-----~~~ 556 (749)
+-..|+.+.|..+++.+..++ |+. ..-.--+....|.|..+.+. +++... +.+-+..+...+.- -+.
T Consensus 376 ~e~~~n~~~A~~~lq~i~~e~---pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~~~~~i~~~l~~~~~r~~~~ 452 (577)
T KOG1258|consen 376 EESNGNFDDAKVILQRIESEY---PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGKENNGILEKLYVKFARLRYK 452 (577)
T ss_pred HHhhccHHHHHHHHHHHHhhC---CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcccccCcchhHHHHHHHHHHHHH
Confidence 667889999999999998763 553 33334466778889988888 555444 33333333333332 245
Q ss_pred hcCCHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHcCC
Q 004487 557 IHKNLEFAKKAADQLFKMEKLRDAAPYVAMSNIYAVAGQ 595 (749)
Q Consensus 557 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 595 (749)
..++.+.|..++.++.+..| ++...|..+++.....+.
T Consensus 453 i~~d~~~a~~~l~~~~~~~~-~~k~~~~~~~~~~~~~~~ 490 (577)
T KOG1258|consen 453 IREDADLARIILLEANDILP-DCKVLYLELIRFELIQPS 490 (577)
T ss_pred HhcCHHHHHHHHHHhhhcCC-ccHHHHHHHHHHHHhCCc
Confidence 67899999999999999999 999999999998877663
No 229
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=94.69 E-value=0.21 Score=51.49 Aligned_cols=62 Identities=10% Similarity=0.057 Sum_probs=35.5
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCCH----HhHHHHHHHHHhcCCHHHHHHHHHHHhcC
Q 004487 513 KEHYASMVDILCRSGCFDEAEKLMAQM-PFEPDE----IMWSSVINSCRIHKNLEFAKKAADQLFKM 574 (749)
Q Consensus 513 ~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~----~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 574 (749)
...++.+..+|...|++++|+..|++. .+.|+. .+|..+..+|...|+.++|+..+++++++
T Consensus 75 a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 75 AEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 344555555555566666666665553 444542 23566666666666666666666666664
No 230
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=94.66 E-value=0.26 Score=46.69 Aligned_cols=100 Identities=14% Similarity=0.135 Sum_probs=80.3
Q ss_pred HHHHHhhCC--CCCcchHHHHHHHHHhc-----CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccC-----------
Q 004487 430 AIQTFKEMP--ERNIVSWNALISACAQN-----GDAQATLKSFEDMVQSGYQPDSVSLLSVLSACSHCG----------- 491 (749)
Q Consensus 430 A~~~~~~~~--~~~~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g----------- 491 (749)
.++.|.... ++|-.+|-+++..+..+ ++.+-....++.|.+-|+.-|..+|..||+.+-+..
T Consensus 53 ~e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F 132 (406)
T KOG3941|consen 53 VEKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVF 132 (406)
T ss_pred hhhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHH
Confidence 455666666 67888898888888754 566777777889999999999999999999875532
Q ss_pred -----CHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHHcCCHH
Q 004487 492 -----LIEEGLQYFNSMTQKYKLRPKKEHYASMVDILCRSGCFD 530 (749)
Q Consensus 492 -----~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~ 530 (749)
+-+-++.++++|. .+|+.||.++-..|+.+++|.|..-
T Consensus 133 ~HYP~QQ~C~I~vLeqME-~hGVmPdkE~e~~lvn~FGr~~~p~ 175 (406)
T KOG3941|consen 133 LHYPQQQNCAIKVLEQME-WHGVMPDKEIEDILVNAFGRWNFPT 175 (406)
T ss_pred hhCchhhhHHHHHHHHHH-HcCCCCchHHHHHHHHHhccccccH
Confidence 2355788999997 5699999999999999999988643
No 231
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=94.53 E-value=0.21 Score=52.84 Aligned_cols=132 Identities=18% Similarity=0.272 Sum_probs=82.9
Q ss_pred HHhcCCHHHHHHHHHH-HHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHHcCCHH
Q 004487 452 CAQNGDAQATLKSFED-MVQSGYQPDSVSLLSVLSACSHCGLIEEGLQYFNSMTQKYKLRPKKEHYASMVDILCRSGCFD 530 (749)
Q Consensus 452 ~~~~g~~~~A~~~~~~-m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~ 530 (749)
..-.|+++++.++... -.-..++ ..-...++.-+.+.|..+.|+++-..-.. -.++..+.|+++
T Consensus 271 av~~~d~~~v~~~i~~~~ll~~i~--~~~~~~i~~fL~~~G~~e~AL~~~~D~~~-------------rFeLAl~lg~L~ 335 (443)
T PF04053_consen 271 AVLRGDFEEVLRMIAASNLLPNIP--KDQGQSIARFLEKKGYPELALQFVTDPDH-------------RFELALQLGNLD 335 (443)
T ss_dssp HHHTT-HHH-----HHHHTGGG----HHHHHHHHHHHHHTT-HHHHHHHSS-HHH-------------HHHHHHHCT-HH
T ss_pred HHHcCChhhhhhhhhhhhhcccCC--hhHHHHHHHHHHHCCCHHHHHhhcCChHH-------------HhHHHHhcCCHH
Confidence 4456777777666641 1111122 33456677777778888888876643322 246667888888
Q ss_pred HHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHcCCchhHHHHHHHHHhCC
Q 004487 531 EAEKLMAQMPFEPDEIMWSSVINSCRIHKNLEFAKKAADQLFKMEKLRDAAPYVAMSNIYAVAGQWESVSQVKKAMRERG 610 (749)
Q Consensus 531 ~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 610 (749)
.|.++.++.. +...|..|......+||++.|+..+++..+ +..|+-+|...|+.+.-.++.+....+|
T Consensus 336 ~A~~~a~~~~---~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~~~~ 403 (443)
T PF04053_consen 336 IALEIAKELD---DPEKWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAEERG 403 (443)
T ss_dssp HHHHHCCCCS---THHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHHTT
T ss_pred HHHHHHHhcC---cHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHHHcc
Confidence 8888877653 677898888888888999888888887443 4457778888888877777777766665
No 232
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=94.49 E-value=2.6 Score=39.57 Aligned_cols=141 Identities=18% Similarity=0.177 Sum_probs=76.8
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCC-CC-HHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHH
Q 004487 448 LISACAQNGDAQATLKSFEDMVQSGYQ-PD-SVSLLSVLSACSHCGLIEEGLQYFNSMTQKYKLRPKKEHYASMVDILCR 525 (749)
Q Consensus 448 li~~~~~~g~~~~A~~~~~~m~~~g~~-p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~ 525 (749)
....+.+.|++.+|++.|+++...-.. |- ......+..++...|++++|...++...+.+.-.|... +.....+.+.
T Consensus 11 ~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~-~A~Y~~g~~~ 89 (203)
T PF13525_consen 11 KALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKAD-YALYMLGLSY 89 (203)
T ss_dssp HHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHH-HHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchh-hHHHHHHHHH
Confidence 445567788888888888888874211 11 23555667778888888888888888887765555432 2211211111
Q ss_pred cCCHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCchh-----------------HHHHHH
Q 004487 526 SGCFDEAEKLMAQMPFEPDEIMWSSVINSCRIHKNLEFAKKAADQLFKMEKLRDAAP-----------------YVAMSN 588 (749)
Q Consensus 526 ~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~-----------------~~~l~~ 588 (749)
...... .+ .. .+..+....|...|+.+++.-| .+... -..++.
T Consensus 90 ~~~~~~---~~---~~-------------~~D~~~~~~A~~~~~~li~~yP-~S~y~~~A~~~l~~l~~~la~~e~~ia~ 149 (203)
T PF13525_consen 90 YKQIPG---IL---RS-------------DRDQTSTRKAIEEFEELIKRYP-NSEYAEEAKKRLAELRNRLAEHELYIAR 149 (203)
T ss_dssp HHHHHH---HH----T-------------T---HHHHHHHHHHHHHHHH-T-TSTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhCcc---ch---hc-------------ccChHHHHHHHHHHHHHHHHCc-CchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111000 00 00 1122234455555555555555 33222 225788
Q ss_pred HHHHcCCchhHHHHHHHHHhC
Q 004487 589 IYAVAGQWESVSQVKKAMRER 609 (749)
Q Consensus 589 ~~~~~g~~~~a~~~~~~m~~~ 609 (749)
.|.+.|.+..|..-++.+.+.
T Consensus 150 ~Y~~~~~y~aA~~r~~~v~~~ 170 (203)
T PF13525_consen 150 FYYKRGKYKAAIIRFQYVIEN 170 (203)
T ss_dssp HHHCTT-HHHHHHHHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHHH
Confidence 899999999999999988765
No 233
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=94.35 E-value=0.43 Score=42.10 Aligned_cols=70 Identities=17% Similarity=0.256 Sum_probs=42.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhH----HhcCCCCChHH
Q 004487 445 WNALISACAQNGDAQATLKSFEDMVQSGYQPDSVSLLSVLSACSHCGLIEEGLQYFNSMT----QKYKLRPKKEH 515 (749)
Q Consensus 445 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~----~~~~~~p~~~~ 515 (749)
...++..+...|++++|+.+.+.+.... +-|...+..++.++...|+..+|.++|+.+. ++.|+.|+..+
T Consensus 65 ~~~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~ 138 (146)
T PF03704_consen 65 LERLAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPET 138 (146)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHH
T ss_pred HHHHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHH
Confidence 3445566667777777777777777732 3355577777777888888777777776653 24577777654
No 234
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=94.30 E-value=6.8 Score=45.36 Aligned_cols=23 Identities=22% Similarity=0.255 Sum_probs=12.5
Q ss_pred HHHHHHHHHcCCHHHHHHHHHhC
Q 004487 517 ASMVDILCRSGCFDEAEKLMAQM 539 (749)
Q Consensus 517 ~~li~~~~~~g~~~~A~~~~~~~ 539 (749)
..|+..+...++.-+|-++..+.
T Consensus 1003 ~~L~s~L~e~~kh~eAa~il~e~ 1025 (1265)
T KOG1920|consen 1003 EELVSRLVEQRKHYEAAKILLEY 1025 (1265)
T ss_pred HHHHHHHHHcccchhHHHHHHHH
Confidence 34555555555555555555554
No 235
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=94.10 E-value=1.3 Score=41.68 Aligned_cols=176 Identities=17% Similarity=0.229 Sum_probs=82.8
Q ss_pred HHHhcCCHHHHHHHHHhcCCCCcc------cHHHHHHHHHhCCChhHHHHHHHHHHHCCCCcCHH--hHHHHHHHhcccC
Q 004487 319 MYAKCGRFEEAKEIFANLSHISTV------PWTAMISAYVQKGNLEEALNLFIEMCRANISADQA--TFASILRASAELA 390 (749)
Q Consensus 319 ~~~~~g~~~~A~~~~~~~~~~~~~------~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~--t~~~ll~~~~~~~ 390 (749)
.+...|++++|.+.|+.+...-+. ..-.++.++-+.|++++|...|++..+. -|+.. -+...+.+.+...
T Consensus 14 ~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~--yP~~~~~~~A~Y~~g~~~~~ 91 (203)
T PF13525_consen 14 EALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKL--YPNSPKADYALYMLGLSYYK 91 (203)
T ss_dssp HHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH---TT-TTHHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCCcchhhHHHHHHHHHHH
Confidence 345677788888777777532111 1445667777888888888888887664 23221 1221121111100
Q ss_pred cHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004487 391 SLSLGKQLHSFVIRSGFMSNVFSGSALLDMYAKSGSLKDAIQTFKEMPERNIVSWNALISACAQNGDAQATLKSFEDMVQ 470 (749)
Q Consensus 391 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 470 (749)
.... .+ .. ....+...+|...| ..++.-|=......+|.....++.+
T Consensus 92 ~~~~---~~------~~-------------~~D~~~~~~A~~~~-----------~~li~~yP~S~y~~~A~~~l~~l~~ 138 (203)
T PF13525_consen 92 QIPG---IL------RS-------------DRDQTSTRKAIEEF-----------EELIKRYPNSEYAEEAKKRLAELRN 138 (203)
T ss_dssp HHHH---HH-------T-------------T---HHHHHHHHHH-----------HHHHHH-TTSTTHHHHHHHHHHHHH
T ss_pred hCcc---ch------hc-------------ccChHHHHHHHHHH-----------HHHHHHCcCchHHHHHHHHHHHHHH
Confidence 0000 00 00 01111222333333 3344444445555555554444433
Q ss_pred CCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHHHcCCHHHHH
Q 004487 471 SGYQPDSVSLLSVLSACSHCGLIEEGLQYFNSMTQKYKLRPK-KEHYASMVDILCRSGCFDEAE 533 (749)
Q Consensus 471 ~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~ 533 (749)
. .-. --..+..-|.+.|.+..|..-++.+.+.|.-.|. .+....|+.+|.+.|..+.|.
T Consensus 139 ~---la~-~e~~ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a~ 198 (203)
T PF13525_consen 139 R---LAE-HELYIARFYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAAD 198 (203)
T ss_dssp H---HHH-HHHHHHHHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHHH
T ss_pred H---HHH-HHHHHHHHHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHHH
Confidence 1 000 1112445577777888888777777776533332 234456777777777776443
No 236
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=93.90 E-value=0.93 Score=44.00 Aligned_cols=26 Identities=12% Similarity=-0.021 Sum_probs=13.5
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhcCCC
Q 004487 551 VINSCRIHKNLEFAKKAADQLFKMEK 576 (749)
Q Consensus 551 ll~~~~~~g~~~~a~~~~~~~~~~~~ 576 (749)
|..++...|++.+|...++.|++..|
T Consensus 233 LA~~afe~g~~~~A~~~Wq~lL~~lp 258 (287)
T COG4235 233 LAFAAFEQGDYAEAAAAWQMLLDLLP 258 (287)
T ss_pred HHHHHHHcccHHHHHHHHHHHHhcCC
Confidence 33345555555555555555555554
No 237
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=93.63 E-value=7.1 Score=39.99 Aligned_cols=162 Identities=17% Similarity=0.126 Sum_probs=102.4
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCC--CCCHH-HHHHHHHHHhc---cCCHHHHHHHHHHhHHhcCCCCChHHHHHHH
Q 004487 447 ALISACAQNGDAQATLKSFEDMVQSGY--QPDSV-SLLSVLSACSH---CGLIEEGLQYFNSMTQKYKLRPKKEHYASMV 520 (749)
Q Consensus 447 ~li~~~~~~g~~~~A~~~~~~m~~~g~--~p~~~-t~~~ll~a~~~---~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li 520 (749)
.|+-+|....+++..+++++.|...-- .++.. .--...-|+.+ .|+.++|++++..+... .-.+++++|..+.
T Consensus 146 ~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~-~~~~~~d~~gL~G 224 (374)
T PF13281_consen 146 NLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLES-DENPDPDTLGLLG 224 (374)
T ss_pred HHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhc-cCCCChHHHHHHH
Confidence 455569999999999999999987410 11111 11123335566 89999999999985544 5567788887776
Q ss_pred HHH----HHc-----CCHHHHHHHHHhC-CCCCCHHh---HHHHHHHHHhcC-CHHHHHHHH----HHHhcC---CCCCC
Q 004487 521 DIL----CRS-----GCFDEAEKLMAQM-PFEPDEIM---WSSVINSCRIHK-NLEFAKKAA----DQLFKM---EKLRD 579 (749)
Q Consensus 521 ~~~----~~~-----g~~~~A~~~~~~~-~~~p~~~~---~~~ll~~~~~~g-~~~~a~~~~----~~~~~~---~~~~~ 579 (749)
..| ... ..+++|.+.+.+. ..+||... +-+|+......- .-.+..++. ..+.+. ++..+
T Consensus 225 RIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~~~d 304 (374)
T PF13281_consen 225 RIYKDLFLESNFTDRESLDKAIEWYRKGFEIEPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEKMQD 304 (374)
T ss_pred HHHHHHHHHcCccchHHHHHHHHHHHHHHcCCccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhcccccccc
Confidence 554 332 2477888888887 66666432 233333322211 112222322 222222 23345
Q ss_pred chhHHHHHHHHHHcCCchhHHHHHHHHHhC
Q 004487 580 AAPYVAMSNIYAVAGQWESVSQVKKAMRER 609 (749)
Q Consensus 580 ~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 609 (749)
--.+.++..++.-.|+.++|.+..+.|...
T Consensus 305 YWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l 334 (374)
T PF13281_consen 305 YWDVATLLEASVLAGDYEKAIQAAEKAFKL 334 (374)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHhhc
Confidence 666778899999999999999999999865
No 238
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=93.62 E-value=9.9 Score=39.13 Aligned_cols=399 Identities=10% Similarity=0.084 Sum_probs=209.5
Q ss_pred CCChhHHHHHHHHHHcCCChHHHHHHHccCCCCCcc---hHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCcchHHHHH
Q 004487 206 VENVFVANALLDLYSKHDCVVEARKLFGEMPEVDGV---SYNVMITCYAWNEQYKESLKLFRELQFTRFDRSQFPFSTLL 282 (749)
Q Consensus 206 ~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~~~---~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll 282 (749)
+.|...|-.|+.-|...|.+++.++++++|..|-+. +|...+++=....++.....+|.+.+......| .|..-+
T Consensus 39 PtnI~S~fqLiq~~~tq~s~~~~re~yeq~~~pfp~~~~aw~ly~s~ELA~~df~svE~lf~rCL~k~l~ld--LW~lYl 116 (660)
T COG5107 39 PTNILSYFQLIQYLETQESMDAEREMYEQLSSPFPIMEHAWRLYMSGELARKDFRSVESLFGRCLKKSLNLD--LWMLYL 116 (660)
T ss_pred chhHHHHHHHHHHHhhhhhHHHHHHHHHHhcCCCccccHHHHHHhcchhhhhhHHHHHHHHHHHHhhhccHh--HHHHHH
Confidence 557788888999998889999999999988876543 688888887788888888888888876655433 333334
Q ss_pred HHHHccCChH------HHHHHHHHHHH-hcCCc-chhHHHHHHHHHH---------hcCCHHHHHHHHHhcCCCCccc--
Q 004487 283 SVVANKLDLQ------IGRQIHTQTIV-TTAIS-EVKVANSLVDMYA---------KCGRFEEAKEIFANLSHISTVP-- 343 (749)
Q Consensus 283 ~~~~~~~~~~------~a~~~~~~~~~-~g~~~-~~~~~~~li~~~~---------~~g~~~~A~~~~~~~~~~~~~~-- 343 (749)
.-..+....- ...+.++..+. .++.| ....|+..++..- ...++|..++.+.++.......
T Consensus 117 ~YIRr~n~~~tGq~r~~i~~ayefv~~~~~~e~~s~~~W~ey~~fle~~~~~~kwEeQqrid~iR~~Y~ral~tP~~nle 196 (660)
T COG5107 117 EYIRRVNNLITGQKRFKIYEAYEFVLGCAIFEPQSENYWDEYGLFLEYIEELGKWEEQQRIDKIRNGYMRALQTPMGNLE 196 (660)
T ss_pred HHHHhhCcccccchhhhhHHHHHHHHhcccccccccchHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHcCccccHH
Confidence 3333332211 11233333333 23333 2334444444322 1234555666666665321111
Q ss_pred --HHH------HHHHH-Hh--CC----ChhHHHHHHHHHHH--CCCCc----CHHhHHHHHHH-hcc-------------
Q 004487 344 --WTA------MISAY-VQ--KG----NLEEALNLFIEMCR--ANISA----DQATFASILRA-SAE------------- 388 (749)
Q Consensus 344 --~~~------li~~~-~~--~g----~~~~A~~l~~~m~~--~g~~p----~~~t~~~ll~~-~~~------------- 388 (749)
|+- =+... ++ .| -+..|...+++... .|++. +..|++-+-+. .++
T Consensus 197 klW~dy~~fE~e~N~~TarKfvge~sp~ym~ar~~yqe~~nlt~Gl~v~~~~~~Rt~nK~~r~s~S~WlNwIkwE~en~l 276 (660)
T COG5107 197 KLWKDYENFELELNKITARKFVGETSPIYMSARQRYQEIQNLTRGLSVKNPINLRTANKAARTSDSNWLNWIKWEMENGL 276 (660)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHhccccccCchhhhhhccccccccchhhhHhhHhhcCCc
Confidence 211 11111 10 11 23456666666543 34322 22333322110 000
Q ss_pred --cCc--HHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCC--CCcc------------------h
Q 004487 389 --LAS--LSLGKQLHSFVIRSGFMSNVFSGSALLDMYAKSGSLKDAIQTFKEMPE--RNIV------------------S 444 (749)
Q Consensus 389 --~~~--~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~~~~------------------~ 444 (749)
.++ .....-+|.+.... +.....+|----..+...++-+.|.+....-.+ |... +
T Consensus 277 ~L~~~~~~qRi~y~~~q~~~y-~~~~~evw~dys~Y~~~isd~q~al~tv~rg~~~spsL~~~lse~yel~nd~e~v~~~ 355 (660)
T COG5107 277 KLGGRPHEQRIHYIHNQILDY-FYYAEEVWFDYSEYLIGISDKQKALKTVERGIEMSPSLTMFLSEYYELVNDEEAVYGC 355 (660)
T ss_pred ccCCCcHHHHHHHHHHHHHHH-hhhhHHHHHHHHHHHhhccHHHHHHHHHHhcccCCCchheeHHHHHhhcccHHHHhhh
Confidence 000 01111122222221 111222222222333455666777766654332 2210 1
Q ss_pred HHHHHHHHHh---cCCHHHHHHH------HHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcC-CCCChH
Q 004487 445 WNALISACAQ---NGDAQATLKS------FEDMVQSGYQPDSVSLLSVLSACSHCGLIEEGLQYFNSMTQKYK-LRPKKE 514 (749)
Q Consensus 445 ~~~li~~~~~---~g~~~~A~~~------~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~-~~p~~~ 514 (749)
|..++..+.+ .++.+.+... ..+..-....-=...|...+++-.+..-++.|..+|-++.+. + +.+++.
T Consensus 356 fdk~~q~L~r~ys~~~s~~~s~~D~N~e~~~Ell~kr~~k~t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~-~~~~h~vy 434 (660)
T COG5107 356 FDKCTQDLKRKYSMGESESASKVDNNFEYSKELLLKRINKLTFVFCVHLNYVLRKRGLEAARKLFIKLRKE-GIVGHHVY 434 (660)
T ss_pred HHHHHHHHHHHHhhhhhhhhccccCCccccHHHHHHHHhhhhhHHHHHHHHHHHHhhHHHHHHHHHHHhcc-CCCCccee
Confidence 1112221111 1111111111 011110000111234556667777777889999999988865 5 677888
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHhC-CCCCCHHhH-HHHHHHHHhcCCHHHHHHHHHHHhcCCC-CCCchhHHHHHHHHH
Q 004487 515 HYASMVDILCRSGCFDEAEKLMAQM-PFEPDEIMW-SSVINSCRIHKNLEFAKKAADQLFKMEK-LRDAAPYVAMSNIYA 591 (749)
Q Consensus 515 ~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~~~~-~~ll~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~ 591 (749)
.+++++.-++ .|+..-|.++|+-- ..-||...| .-.+.-+...++-+.|..+|+..++.-. ..-...|..++.--.
T Consensus 435 i~~A~~E~~~-~~d~~ta~~ifelGl~~f~d~~~y~~kyl~fLi~inde~naraLFetsv~r~~~~q~k~iy~kmi~YEs 513 (660)
T COG5107 435 IYCAFIEYYA-TGDRATAYNIFELGLLKFPDSTLYKEKYLLFLIRINDEENARALFETSVERLEKTQLKRIYDKMIEYES 513 (660)
T ss_pred eeHHHHHHHh-cCCcchHHHHHHHHHHhCCCchHHHHHHHHHHHHhCcHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHH
Confidence 9999998665 68888899998764 334665554 3345556677888889999986654322 012567888887777
Q ss_pred HcCCchhHHHHHHHHHhC
Q 004487 592 VAGQWESVSQVKKAMRER 609 (749)
Q Consensus 592 ~~g~~~~a~~~~~~m~~~ 609 (749)
.-|+...|..+-+.|.+.
T Consensus 514 ~~G~lN~v~sLe~rf~e~ 531 (660)
T COG5107 514 MVGSLNNVYSLEERFREL 531 (660)
T ss_pred hhcchHHHHhHHHHHHHH
Confidence 888888887777777553
No 239
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=93.50 E-value=10 Score=38.99 Aligned_cols=90 Identities=11% Similarity=0.089 Sum_probs=68.1
Q ss_pred HHHHHHhcCCC-C-CcchHHHHHHHHHcCCChhHHHHHHHHhHhcCCCCCCcchHHHHHHhcCCCCChHHHHHHHHHHHH
Q 004487 24 TARELFNSMVD-R-TAVSWTILIGGYSQKNQFREAFKLFVDMRTDGGSDPDYVTFATLLSGCSEPDTANELIQVHADIIK 101 (749)
Q Consensus 24 ~A~~~f~~~~~-~-~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 101 (749)
+-+++=+++++ | |+.+|-.||.-|..+|..++..+++++|... .+--...|..-+++-....++.....+|.+-++
T Consensus 27 D~lrLRerIkdNPtnI~S~fqLiq~~~tq~s~~~~re~yeq~~~p--fp~~~~aw~ly~s~ELA~~df~svE~lf~rCL~ 104 (660)
T COG5107 27 DELRLRERIKDNPTNILSYFQLIQYLETQESMDAEREMYEQLSSP--FPIMEHAWRLYMSGELARKDFRSVESLFGRCLK 104 (660)
T ss_pred hHHHHHHHhhcCchhHHHHHHHHHHHhhhhhHHHHHHHHHHhcCC--CccccHHHHHHhcchhhhhhHHHHHHHHHHHHh
Confidence 44466666655 3 7889999999999999999999999999763 455556677777776677888889999998887
Q ss_pred hCCCCchhHHHHHHHH
Q 004487 102 FGYNSILIICNSLVDS 117 (749)
Q Consensus 102 ~g~~~~~~~~~~li~~ 117 (749)
..+. +..|...++-
T Consensus 105 k~l~--ldLW~lYl~Y 118 (660)
T COG5107 105 KSLN--LDLWMLYLEY 118 (660)
T ss_pred hhcc--HhHHHHHHHH
Confidence 7654 5556655553
No 240
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=93.39 E-value=8.3 Score=37.56 Aligned_cols=155 Identities=11% Similarity=0.157 Sum_probs=102.9
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHHcCCH
Q 004487 450 SACAQNGDAQATLKSFEDMVQSGYQPDSVSLLSVLSACSHCGLIEEGLQYFNSMTQKYKLRPKKEHYASMVDILCRSGCF 529 (749)
Q Consensus 450 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~ 529 (749)
......|++.+|..+|....... +-+...-..+..+|...|+++.|..++..+-.+. -.........-+..+.+....
T Consensus 142 ~~~~~~e~~~~a~~~~~~al~~~-~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~-~~~~~~~l~a~i~ll~qaa~~ 219 (304)
T COG3118 142 KELIEAEDFGEAAPLLKQALQAA-PENSEAKLLLAECLLAAGDVEAAQAILAALPLQA-QDKAAHGLQAQIELLEQAAAT 219 (304)
T ss_pred hhhhhccchhhHHHHHHHHHHhC-cccchHHHHHHHHHHHcCChHHHHHHHHhCcccc-hhhHHHHHHHHHHHHHHHhcC
Confidence 34567888999999998888742 2233456677788899999999999998765331 111111123456677777777
Q ss_pred HHHHHHHHhCCCCC-CHHhHHHHHHHHHhcCCHHHHHHHHHHHhcCCC-CCCchhHHHHHHHHHHcCCchh-HHHHHHHH
Q 004487 530 DEAEKLMAQMPFEP-DEIMWSSVINSCRIHKNLEFAKKAADQLFKMEK-LRDAAPYVAMSNIYAVAGQWES-VSQVKKAM 606 (749)
Q Consensus 530 ~~A~~~~~~~~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~-a~~~~~~m 606 (749)
.+..++-.+..-.| |...--.|...+...|+.+.|...+=.+++.+. ..|...-..|+.++...|.-+. +.+.+++|
T Consensus 220 ~~~~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g~~Dp~~~~~RRkL 299 (304)
T COG3118 220 PEIQDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFGPADPLVLAYRRKL 299 (304)
T ss_pred CCHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence 77777777765556 455556677778888999988887777766532 1466777778888877774443 34444444
No 241
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=93.29 E-value=2.2 Score=45.20 Aligned_cols=101 Identities=13% Similarity=0.065 Sum_probs=60.5
Q ss_pred HHHHHcCCChHHHHHHHccCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCcchHHHHHHHHHccCChHHHH
Q 004487 216 LDLYSKHDCVVEARKLFGEMPEVDGVSYNVMITCYAWNEQYKESLKLFRELQFTRFDRSQFPFSTLLSVVANKLDLQIGR 295 (749)
Q Consensus 216 i~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~ 295 (749)
.+...++|+++.|.++-+... +...|..|.....+.|+++-|.+.|.+... +..++-.+...|+.+.-.
T Consensus 325 FeLAl~lg~L~~A~~~a~~~~--~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~ 393 (443)
T PF04053_consen 325 FELALQLGNLDIALEIAKELD--DPEKWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLS 393 (443)
T ss_dssp HHHHHHCT-HHHHHHHCCCCS--THHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHH
T ss_pred hHHHHhcCCHHHHHHHHHhcC--cHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHH
Confidence 345567888888888877765 556888888888888888888888887642 455555555556655555
Q ss_pred HHHHHHHHhcCCcchhHHHHHHHHHHhcCCHHHHHHHH
Q 004487 296 QIHTQTIVTTAISEVKVANSLVDMYAKCGRFEEAKEIF 333 (749)
Q Consensus 296 ~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~ 333 (749)
++-......|- +|....++...|+.++..+++
T Consensus 394 kl~~~a~~~~~------~n~af~~~~~lgd~~~cv~lL 425 (443)
T PF04053_consen 394 KLAKIAEERGD------INIAFQAALLLGDVEECVDLL 425 (443)
T ss_dssp HHHHHHHHTT-------HHHHHHHHHHHT-HHHHHHHH
T ss_pred HHHHHHHHccC------HHHHHHHHHHcCCHHHHHHHH
Confidence 55544444331 223333334445555444444
No 242
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=93.14 E-value=4.3 Score=43.73 Aligned_cols=158 Identities=14% Similarity=0.132 Sum_probs=100.6
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCC-CCCCH-----HHHHHHHHHHh----ccCCHHHHHHHHHHhHHhcCCCCChHHH
Q 004487 447 ALISACAQNGDAQATLKSFEDMVQSG-YQPDS-----VSLLSVLSACS----HCGLIEEGLQYFNSMTQKYKLRPKKEHY 516 (749)
Q Consensus 447 ~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~-----~t~~~ll~a~~----~~g~~~~a~~~~~~m~~~~~~~p~~~~~ 516 (749)
.+++...-.||-+.+++++.+..+.+ +.-.. -+|..++..+. .....+.+.++++.+.+. -|+...|
T Consensus 193 kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~---yP~s~lf 269 (468)
T PF10300_consen 193 KLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR---YPNSALF 269 (468)
T ss_pred HHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh---CCCcHHH
Confidence 34455555677777777766654432 11111 12333333222 245788899999998865 4766555
Q ss_pred HHH-HHHHHHcCCHHHHHHHHHhCC-CCC-----CHHhHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCchhHH-HHHH
Q 004487 517 ASM-VDILCRSGCFDEAEKLMAQMP-FEP-----DEIMWSSVINSCRIHKNLEFAKKAADQLFKMEKLRDAAPYV-AMSN 588 (749)
Q Consensus 517 ~~l-i~~~~~~g~~~~A~~~~~~~~-~~p-----~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~-~l~~ 588 (749)
.-. ...+...|++++|.+.|++.- .+. ....+--+...+....++++|...+.++.+... .+...|. ..+-
T Consensus 270 l~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~-WSka~Y~Y~~a~ 348 (468)
T PF10300_consen 270 LFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESK-WSKAFYAYLAAA 348 (468)
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhccc-cHHHHHHHHHHH
Confidence 433 456778899999999998752 111 122333345556778899999999999999887 5555544 5555
Q ss_pred HHHHcCCc-------hhHHHHHHHHHh
Q 004487 589 IYAVAGQW-------ESVSQVKKAMRE 608 (749)
Q Consensus 589 ~~~~~g~~-------~~a~~~~~~m~~ 608 (749)
+|...|+. ++|.+++.+...
T Consensus 349 c~~~l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 349 CLLMLGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred HHHhhccchhhhhhHHHHHHHHHHHHH
Confidence 67888988 777777777644
No 243
>PRK11906 transcriptional regulator; Provisional
Probab=93.12 E-value=1.7 Score=45.16 Aligned_cols=117 Identities=11% Similarity=0.038 Sum_probs=87.5
Q ss_pred CHHHHHHHHHHhHHhcCCCCCh-HHHHHHHHHHH---------HcCCHHHHHHHHHhC-CCCC-CHHhHHHHHHHHHhcC
Q 004487 492 LIEEGLQYFNSMTQKYKLRPKK-EHYASMVDILC---------RSGCFDEAEKLMAQM-PFEP-DEIMWSSVINSCRIHK 559 (749)
Q Consensus 492 ~~~~a~~~~~~m~~~~~~~p~~-~~~~~li~~~~---------~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g 559 (749)
..+.|+.+|.+......+.|+- ..|..+...+. ......+|.++.++. ...| |+.....+..+....+
T Consensus 273 ~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~Da~a~~~~g~~~~~~~ 352 (458)
T PRK11906 273 SIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTVDGKILAIMGLITGLSG 352 (458)
T ss_pred HHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhc
Confidence 4577888898887555677763 34444333222 122345677777666 4445 5777777777777788
Q ss_pred CHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHcCCchhHHHHHHHHHhC
Q 004487 560 NLEFAKKAADQLFKMEKLRDAAPYVAMSNIYAVAGQWESVSQVKKAMRER 609 (749)
Q Consensus 560 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 609 (749)
+.+.|...|+++..+.| +...+|...+....-.|+.++|.+.+++..+.
T Consensus 353 ~~~~a~~~f~rA~~L~P-n~A~~~~~~~~~~~~~G~~~~a~~~i~~alrL 401 (458)
T PRK11906 353 QAKVSHILFEQAKIHST-DIASLYYYRALVHFHNEKIEEARICIDKSLQL 401 (458)
T ss_pred chhhHHHHHHHHhhcCC-ccHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc
Confidence 89999999999999999 99999999999999999999999999885443
No 244
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=93.03 E-value=5.6 Score=34.61 Aligned_cols=42 Identities=2% Similarity=0.082 Sum_probs=18.9
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc
Q 004487 447 ALISACAQNGDAQATLKSFEDMVQSGYQPDSVSLLSVLSACSH 489 (749)
Q Consensus 447 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~ 489 (749)
.++..+.+.+.......+++.+...+ ..+...++.++..|++
T Consensus 12 ~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~ 53 (140)
T smart00299 12 EVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAK 53 (140)
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHH
Confidence 34444444444555555555544443 2333344444444443
No 245
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=92.93 E-value=1.1 Score=37.59 Aligned_cols=67 Identities=7% Similarity=-0.069 Sum_probs=48.4
Q ss_pred CCHHhHHHHHHHHHh---cCCHHHHHHHHHHHhc-CCCCCCchhHHHHHHHHHHcCCchhHHHHHHHHHhC
Q 004487 543 PDEIMWSSVINSCRI---HKNLEFAKKAADQLFK-MEKLRDAAPYVAMSNIYAVAGQWESVSQVKKAMRER 609 (749)
Q Consensus 543 p~~~~~~~ll~~~~~---~g~~~~a~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 609 (749)
++..+--.+..+... ..++.+++.+++.+.+ -.|.........|+-.+++.|+++++.++.+...+.
T Consensus 30 ~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~ 100 (149)
T KOG3364|consen 30 VSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLET 100 (149)
T ss_pred chHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhh
Confidence 333344444555443 3467889999999997 555445666777888999999999999999988664
No 246
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=92.71 E-value=2.2 Score=36.70 Aligned_cols=66 Identities=18% Similarity=0.220 Sum_probs=40.4
Q ss_pred HHcCCHHHHHHHHHhC----CCCC-CHHhHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCchhHHHHHHH
Q 004487 524 CRSGCFDEAEKLMAQM----PFEP-DEIMWSSVINSCRIHKNLEFAKKAADQLFKMEKLRDAAPYVAMSNI 589 (749)
Q Consensus 524 ~~~g~~~~A~~~~~~~----~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 589 (749)
.+.|++++|.+.|+.+ |..| ....--.|+.++.+.+++++|...+++.+++.|......|.....+
T Consensus 21 l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~g 91 (142)
T PF13512_consen 21 LQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRG 91 (142)
T ss_pred HHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHH
Confidence 3566666776666665 3222 2334445667777777777777777777777774444445444444
No 247
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=92.66 E-value=6.4 Score=34.27 Aligned_cols=81 Identities=14% Similarity=0.125 Sum_probs=35.2
Q ss_pred HHHHHccCChHHHHHHHHHHHHhcCCcchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCCcccHHHHHHHHHhCCChhHHH
Q 004487 282 LSVVANKLDLQIGRQIHTQTIVTTAISEVKVANSLVDMYAKCGRFEEAKEIFANLSHISTVPWTAMISAYVQKGNLEEAL 361 (749)
Q Consensus 282 l~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 361 (749)
+..+...+.......+++.+++.+ ..+....+.++..|++.+ .++..+.++. ..+.......+..|.+.+.++++.
T Consensus 14 v~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~~-~~~ll~~l~~--~~~~yd~~~~~~~c~~~~l~~~~~ 89 (140)
T smart00299 14 VELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKYD-PQKEIERLDN--KSNHYDIEKVGKLCEKAKLYEEAV 89 (140)
T ss_pred HHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHHC-HHHHHHHHHh--ccccCCHHHHHHHHHHcCcHHHHH
Confidence 333333333444444444444443 244556666777776653 2333333331 122222333444444444444444
Q ss_pred HHHHH
Q 004487 362 NLFIE 366 (749)
Q Consensus 362 ~l~~~ 366 (749)
-++.+
T Consensus 90 ~l~~k 94 (140)
T smart00299 90 ELYKK 94 (140)
T ss_pred HHHHh
Confidence 44433
No 248
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.58 E-value=20 Score=39.79 Aligned_cols=46 Identities=15% Similarity=0.116 Sum_probs=25.7
Q ss_pred HHHHHHHHHcCCChHHHHHHHccCCCCCcchHHHHHHHHHhcCChh
Q 004487 212 ANALLDLYSKHDCVVEARKLFGEMPEVDGVSYNVMITCYAWNEQYK 257 (749)
Q Consensus 212 ~~~Li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~ 257 (749)
+..+|+.+.-.|++++|-...-.|-..+..-|.-.+..+...++..
T Consensus 395 ~~~yI~HLl~~~~y~~Aas~~p~m~gn~~~eWe~~V~~f~e~~~l~ 440 (846)
T KOG2066|consen 395 GKTYIDHLLFEGKYDEAASLCPKMLGNNAAEWELWVFKFAELDQLT 440 (846)
T ss_pred HHHHHHHHHhcchHHHHHhhhHHHhcchHHHHHHHHHHhccccccc
Confidence 3445555555666666666666665555555555555555555443
No 249
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.38 E-value=3.7 Score=40.37 Aligned_cols=112 Identities=13% Similarity=0.197 Sum_probs=56.8
Q ss_pred cCCHHHHHHHHhhCC---CCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH----HHHhccCCHHHH
Q 004487 424 SGSLKDAIQTFKEMP---ERNIVSWNALISACAQNGDAQATLKSFEDMVQSGYQPDSVSLLSVL----SACSHCGLIEEG 496 (749)
Q Consensus 424 ~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll----~a~~~~g~~~~a 496 (749)
.|+..+|...++++. ..|..+|+--=.+|...|+...-...+++.... ..||...|..+= -++...|-+++|
T Consensus 116 ~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~g~y~dA 194 (491)
T KOG2610|consen 116 RGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEECGIYDDA 194 (491)
T ss_pred cccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHhccchhH
Confidence 455555555555544 235555655556666666666666666665543 234443222221 123445666666
Q ss_pred HHHHHHhHHhcCCCC-ChHHHHHHHHHHHHcCCHHHHHHHHHhC
Q 004487 497 LQYFNSMTQKYKLRP-KKEHYASMVDILCRSGCFDEAEKLMAQM 539 (749)
Q Consensus 497 ~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~ 539 (749)
.+.-++.. .+.| |.-...+....+.-.|++.++.+++.+-
T Consensus 195 Ek~A~ral---qiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~t 235 (491)
T KOG2610|consen 195 EKQADRAL---QINRFDCWASHAKAHVLEMNGRHKEGKEFMYKT 235 (491)
T ss_pred HHHHHhhc---cCCCcchHHHHHHHHHHHhcchhhhHHHHHHhc
Confidence 66554443 2333 2222334555556666666666666554
No 250
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.37 E-value=9.9 Score=35.82 Aligned_cols=87 Identities=16% Similarity=0.163 Sum_probs=46.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHhCC-------CCCCH-HhHHHHHHHHHhcCCHHHHHHHHHHHhcCC----CCCCchh
Q 004487 515 HYASMVDILCRSGCFDEAEKLMAQMP-------FEPDE-IMWSSVINSCRIHKNLEFAKKAADQLFKME----KLRDAAP 582 (749)
Q Consensus 515 ~~~~li~~~~~~g~~~~A~~~~~~~~-------~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~----~~~~~~~ 582 (749)
.|......|.|..+++||-..+.+-+ --|+. ..+-++|-.+....|+..|+..++.--+.+ + .+..+
T Consensus 152 l~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~s-ed~r~ 230 (308)
T KOG1585|consen 152 LYGKCSRVLVRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKS-EDSRS 230 (308)
T ss_pred HHHHhhhHhhhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccCh-HHHHH
Confidence 34444555666666666665554431 11221 123334444455557777777777654432 3 45556
Q ss_pred HHHHHHHHHHcCCchhHHHHH
Q 004487 583 YVAMSNIYAVAGQWESVSQVK 603 (749)
Q Consensus 583 ~~~l~~~~~~~g~~~~a~~~~ 603 (749)
...|+.+| ..|+.+++.++.
T Consensus 231 lenLL~ay-d~gD~E~~~kvl 250 (308)
T KOG1585|consen 231 LENLLTAY-DEGDIEEIKKVL 250 (308)
T ss_pred HHHHHHHh-ccCCHHHHHHHH
Confidence 66666655 566666665554
No 251
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=92.28 E-value=1.4 Score=42.18 Aligned_cols=92 Identities=22% Similarity=0.282 Sum_probs=47.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCh-HHHHHH
Q 004487 445 WNALISACAQNGDAQATLKSFEDMVQSGYQPDS----VSLLSVLSACSHCGLIEEGLQYFNSMTQKYKLRPKK-EHYASM 519 (749)
Q Consensus 445 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~----~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~-~~~~~l 519 (749)
|+.-+.. .+.|++..|...|...++.. |+. ..+-.|..++...|++++|..+|..+.+.|+-.|.. +.+--|
T Consensus 145 Y~~A~~~-~ksgdy~~A~~~F~~fi~~Y--P~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKl 221 (262)
T COG1729 145 YNAALDL-YKSGDYAEAEQAFQAFIKKY--PNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKL 221 (262)
T ss_pred HHHHHHH-HHcCCHHHHHHHHHHHHHcC--CCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHH
Confidence 5544443 33455666666666666632 221 133345566666666666666666666555444432 444444
Q ss_pred HHHHHHcCCHHHHHHHHHhC
Q 004487 520 VDILCRSGCFDEAEKLMAQM 539 (749)
Q Consensus 520 i~~~~~~g~~~~A~~~~~~~ 539 (749)
.....+.|+.++|...+++.
T Consensus 222 g~~~~~l~~~d~A~atl~qv 241 (262)
T COG1729 222 GVSLGRLGNTDEACATLQQV 241 (262)
T ss_pred HHHHHHhcCHHHHHHHHHHH
Confidence 44555555555554444444
No 252
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=92.23 E-value=14 Score=37.33 Aligned_cols=209 Identities=18% Similarity=0.170 Sum_probs=124.3
Q ss_pred hcCCHHHHHHHHHhcCCCCc---ccHHHHHHHHHhCCChhHHHHHHHHHHHCC-CCcCHH--hHHHHHHHhcc---cCcH
Q 004487 322 KCGRFEEAKEIFANLSHIST---VPWTAMISAYVQKGNLEEALNLFIEMCRAN-ISADQA--TFASILRASAE---LASL 392 (749)
Q Consensus 322 ~~g~~~~A~~~~~~~~~~~~---~~~~~li~~~~~~g~~~~A~~l~~~m~~~g-~~p~~~--t~~~ll~~~~~---~~~~ 392 (749)
+.|..+.|+..-+...+.-. -.|.+.+...+..|+++.|+++++.-.... +.++.. .-..+|.+-+. ..+.
T Consensus 166 r~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp 245 (531)
T COG3898 166 RLGAREAARHYAERAAEKAPQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADP 245 (531)
T ss_pred hcccHHHHHHHHHHHHhhccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCCh
Confidence 45666666666655543222 226778888899999999999888765532 444432 12233332211 1234
Q ss_pred HHHHHHHHHHHHhCCCCchhHH-HHHHHHHHhcCCHHHHHHHHhhCCC--CCcchHHHHHHHHHhcCCHHHHHHHHHHHH
Q 004487 393 SLGKQLHSFVIRSGFMSNVFSG-SALLDMYAKSGSLKDAIQTFKEMPE--RNIVSWNALISACAQNGDAQATLKSFEDMV 469 (749)
Q Consensus 393 ~~a~~~~~~~~~~~~~~~~~~~-~~li~~y~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 469 (749)
..++..-.+..+ +.||..-. -.-...|.+.|++.++-.+++.+-+ |.+..|.. -.+++.|+ .++.-+++..
T Consensus 246 ~~Ar~~A~~a~K--L~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP~ia~l--Y~~ar~gd--ta~dRlkRa~ 319 (531)
T COG3898 246 ASARDDALEANK--LAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHPDIALL--YVRARSGD--TALDRLKRAK 319 (531)
T ss_pred HHHHHHHHHHhh--cCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCChHHHHH--HHHhcCCC--cHHHHHHHHH
Confidence 444444333333 33332221 1234678889999999999888864 44444432 22344554 3443333332
Q ss_pred HC-CCCCCHH-HHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHHc-CCHHHHHHHHHhC
Q 004487 470 QS-GYQPDSV-SLLSVLSACSHCGLIEEGLQYFNSMTQKYKLRPKKEHYASMVDILCRS-GCFDEAEKLMAQM 539 (749)
Q Consensus 470 ~~-g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~-g~~~~A~~~~~~~ 539 (749)
.. .++||.. +...+..+-...|++..|..--+... ...|....|..|.+.-... |+-.++...+.+.
T Consensus 320 ~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~---r~~pres~~lLlAdIeeAetGDqg~vR~wlAqa 389 (531)
T COG3898 320 KLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAA---REAPRESAYLLLADIEEAETGDQGKVRQWLAQA 389 (531)
T ss_pred HHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHh---hhCchhhHHHHHHHHHhhccCchHHHHHHHHHH
Confidence 21 2667654 66677778888888888777655544 4678888888887776554 8888888888776
No 253
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=92.22 E-value=1.7 Score=44.05 Aligned_cols=138 Identities=12% Similarity=0.079 Sum_probs=93.2
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHHcCC
Q 004487 449 ISACAQNGDAQATLKSFEDMVQSGYQPDSVSLLSVLSACSHCGLIEEGLQYFNSMTQKYKLRPKKEHYASMVDILCRSGC 528 (749)
Q Consensus 449 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~ 528 (749)
.+.|.+.|++..|...|++.... |. +...-+.++...... .-...+..+.-.+.+.++
T Consensus 215 Gn~~fK~gk~~~A~~~Yerav~~------------l~-~~~~~~~ee~~~~~~---------~k~~~~lNlA~c~lKl~~ 272 (397)
T KOG0543|consen 215 GNVLFKEGKFKLAKKRYERAVSF------------LE-YRRSFDEEEQKKAEA---------LKLACHLNLAACYLKLKE 272 (397)
T ss_pred hhHHHhhchHHHHHHHHHHHHHH------------hh-ccccCCHHHHHHHHH---------HHHHHhhHHHHHHHhhhh
Confidence 35677778888888887776551 00 111111122222211 112345667778888899
Q ss_pred HHHHHHHHHhC-CCCC-CHHhHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHcCCchhH-HHHHHH
Q 004487 529 FDEAEKLMAQM-PFEP-DEIMWSSVINSCRIHKNLEFAKKAADQLFKMEKLRDAAPYVAMSNIYAVAGQWESV-SQVKKA 605 (749)
Q Consensus 529 ~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a-~~~~~~ 605 (749)
+.+|++.-++. ...| |.-..--=..+|...|+++.|+..|+++++++| .|..+-.-|+.+-.+..+..+. .+++..
T Consensus 273 ~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P-~Nka~~~el~~l~~k~~~~~~kekk~y~~ 351 (397)
T KOG0543|consen 273 YKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEP-SNKAARAELIKLKQKIREYEEKEKKMYAN 351 (397)
T ss_pred HHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99988887776 4444 444444446678889999999999999999999 9988888888887777766555 778888
Q ss_pred HHhC
Q 004487 606 MRER 609 (749)
Q Consensus 606 m~~~ 609 (749)
|-..
T Consensus 352 mF~k 355 (397)
T KOG0543|consen 352 MFAK 355 (397)
T ss_pred Hhhc
Confidence 8554
No 254
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=92.10 E-value=1.5 Score=42.05 Aligned_cols=101 Identities=20% Similarity=0.166 Sum_probs=67.4
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCC-ChHHHHHHHHHHHHcCCHHHHHHHHHhC----CCCCC-HHhHHHHH
Q 004487 479 SLLSVLSACSHCGLIEEGLQYFNSMTQKYKLRP-KKEHYASMVDILCRSGCFDEAEKLMAQM----PFEPD-EIMWSSVI 552 (749)
Q Consensus 479 t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~----~~~p~-~~~~~~ll 552 (749)
.|+.-+. +...|++.+|.+-|....++|.-.+ ....+-.|...+...|++++|...|..+ |-.|. +..+--|.
T Consensus 144 ~Y~~A~~-~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg 222 (262)
T COG1729 144 LYNAALD-LYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLG 222 (262)
T ss_pred HHHHHHH-HHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHH
Confidence 4554444 3456678888888888887652211 2344556788888888888888887776 33332 34555566
Q ss_pred HHHHhcCCHHHHHHHHHHHhcCCCCCCch
Q 004487 553 NSCRIHKNLEFAKKAADQLFKMEKLRDAA 581 (749)
Q Consensus 553 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 581 (749)
......|+.++|...++++.+..| ..+.
T Consensus 223 ~~~~~l~~~d~A~atl~qv~k~YP-~t~a 250 (262)
T COG1729 223 VSLGRLGNTDEACATLQQVIKRYP-GTDA 250 (262)
T ss_pred HHHHHhcCHHHHHHHHHHHHHHCC-CCHH
Confidence 667778888888888888888887 4433
No 255
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=92.08 E-value=7.1 Score=37.23 Aligned_cols=50 Identities=24% Similarity=0.327 Sum_probs=36.9
Q ss_pred HhcCCHHHHHHHHHhcCCCCccc------HHHHHHHHHhCCChhHHHHHHHHHHHC
Q 004487 321 AKCGRFEEAKEIFANLSHISTVP------WTAMISAYVQKGNLEEALNLFIEMCRA 370 (749)
Q Consensus 321 ~~~g~~~~A~~~~~~~~~~~~~~------~~~li~~~~~~g~~~~A~~l~~~m~~~ 370 (749)
.+.|++++|.+.|+.+....+.+ --.++.++-+.+++++|+..+++....
T Consensus 45 L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~l 100 (254)
T COG4105 45 LQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRL 100 (254)
T ss_pred HhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHh
Confidence 56788999999998887543333 334556777888999999888887764
No 256
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=91.89 E-value=11 Score=35.48 Aligned_cols=163 Identities=15% Similarity=0.146 Sum_probs=111.9
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHhhCCC--CCc-chHHHHHH-HHHhcCCHHHHHHHHHHHHHCCCCC----CHHHHH
Q 004487 410 NVFSGSALLDMYAKSGSLKDAIQTFKEMPE--RNI-VSWNALIS-ACAQNGDAQATLKSFEDMVQSGYQP----DSVSLL 481 (749)
Q Consensus 410 ~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~~~-~~~~~li~-~~~~~g~~~~A~~~~~~m~~~g~~p----~~~t~~ 481 (749)
....+..+...+...+....+.+.+..... ++. ..+..... .+...|+++.|...+.+... ..| ....+.
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~ 171 (291)
T COG0457 94 LAEALLNLGLLLEALGKYEEALELLEKALALDPDPDLAEALLALGALYELGDYEEALELYEKALE--LDPELNELAEALL 171 (291)
T ss_pred hHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCCccchHHHHH
Confidence 334444555556666667777777766553 221 22333333 67888999999999998865 333 233444
Q ss_pred HHHHHHhccCCHHHHHHHHHHhHHhcCCCC-ChHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC-HHhHHHHHHHHHhc
Q 004487 482 SVLSACSHCGLIEEGLQYFNSMTQKYKLRP-KKEHYASMVDILCRSGCFDEAEKLMAQM-PFEPD-EIMWSSVINSCRIH 558 (749)
Q Consensus 482 ~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~ 558 (749)
.....+...++.+.+...+...... ... ....+..+...+...+.+++|...+... ...|+ ...+..+...+...
T Consensus 172 ~~~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (291)
T COG0457 172 ALGALLEALGRYEEALELLEKALKL--NPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPDNAEALYNLALLLLEL 249 (291)
T ss_pred HhhhHHHHhcCHHHHHHHHHHHHhh--CcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHc
Confidence 4444567788999999999888743 222 3667778888888899999999998887 44454 45555555565577
Q ss_pred CCHHHHHHHHHHHhcCCC
Q 004487 559 KNLEFAKKAADQLFKMEK 576 (749)
Q Consensus 559 g~~~~a~~~~~~~~~~~~ 576 (749)
++.+.+...+++..+..|
T Consensus 250 ~~~~~~~~~~~~~~~~~~ 267 (291)
T COG0457 250 GRYEEALEALEKALELDP 267 (291)
T ss_pred CCHHHHHHHHHHHHHhCc
Confidence 789999999999999888
No 257
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=91.77 E-value=0.27 Score=30.35 Aligned_cols=31 Identities=10% Similarity=0.020 Sum_probs=24.0
Q ss_pred HhHHHHHHHHHhcCCHHHHHHHHHHHhcCCC
Q 004487 546 IMWSSVINSCRIHKNLEFAKKAADQLFKMEK 576 (749)
Q Consensus 546 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~ 576 (749)
.+|..+...+...|++++|+..++++++++|
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p 32 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDP 32 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCc
Confidence 4677777788888888888888888888877
No 258
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=91.67 E-value=4.2 Score=43.82 Aligned_cols=81 Identities=19% Similarity=0.202 Sum_probs=37.7
Q ss_pred CCHHHHHHHHhhCCC--CCcchHHHHH-HHHHhcCCHHHHHHHHHHHHHCCC---CCCHHHHHHHHHHHhccCCHHHHHH
Q 004487 425 GSLKDAIQTFKEMPE--RNIVSWNALI-SACAQNGDAQATLKSFEDMVQSGY---QPDSVSLLSVLSACSHCGLIEEGLQ 498 (749)
Q Consensus 425 g~~~~A~~~~~~~~~--~~~~~~~~li-~~~~~~g~~~~A~~~~~~m~~~g~---~p~~~t~~~ll~a~~~~g~~~~a~~ 498 (749)
...+.|.++++.+.+ |+...|.-.- ..+...|+.++|++.|++...... +.....+--+...+.-.++|++|.+
T Consensus 247 ~~~~~a~~lL~~~~~~yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~ 326 (468)
T PF10300_consen 247 VPLEEAEELLEEMLKRYPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAE 326 (468)
T ss_pred CCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHH
Confidence 345556666655553 5544444332 223445666666666665432110 1112223333334445555555555
Q ss_pred HHHHhHH
Q 004487 499 YFNSMTQ 505 (749)
Q Consensus 499 ~~~~m~~ 505 (749)
.|..+.+
T Consensus 327 ~f~~L~~ 333 (468)
T PF10300_consen 327 YFLRLLK 333 (468)
T ss_pred HHHHHHh
Confidence 5555554
No 259
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=91.55 E-value=6.3 Score=33.99 Aligned_cols=108 Identities=17% Similarity=0.156 Sum_probs=57.9
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHHcC
Q 004487 451 ACAQNGDAQATLKSFEDMVQSGYQPD---SVSLLSVLSACSHCGLIEEGLQYFNSMTQKYKLRPKKEHYASMVDILCRSG 527 (749)
Q Consensus 451 ~~~~~g~~~~A~~~~~~m~~~g~~p~---~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g 527 (749)
...+.|++++|.+.|+.+... .+.. ...-..++.+|...|++++|...+++..+-+.-.|++ .|.....+++.-.
T Consensus 19 ~~l~~~~Y~~A~~~le~L~~r-yP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~v-dYa~Y~~gL~~~~ 96 (142)
T PF13512_consen 19 EALQKGNYEEAIKQLEALDTR-YPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNV-DYAYYMRGLSYYE 96 (142)
T ss_pred HHHHhCCHHHHHHHHHHHHhc-CCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCc-cHHHHHHHHHHHH
Confidence 345567777777777777664 2211 2345556667777777777777777776544333332 2333333333222
Q ss_pred CHHHHHHHHHhC-CCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHhcCCC
Q 004487 528 CFDEAEKLMAQM-PFEPDEIMWSSVINSCRIHKNLEFAKKAADQLFKMEK 576 (749)
Q Consensus 528 ~~~~A~~~~~~~-~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~ 576 (749)
..+ ..+..+ +.+ +..+....|...|+++++.-|
T Consensus 97 ~~~---~~~~~~~~~d-------------rD~~~~~~A~~~f~~lv~~yP 130 (142)
T PF13512_consen 97 QDE---GSLQSFFRSD-------------RDPTPARQAFRDFEQLVRRYP 130 (142)
T ss_pred Hhh---hHHhhhcccc-------------cCcHHHHHHHHHHHHHHHHCc
Confidence 221 111111 111 122346678888888888887
No 260
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=91.49 E-value=0.42 Score=29.38 Aligned_cols=30 Identities=13% Similarity=0.149 Sum_probs=21.7
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHhcCCC
Q 004487 547 MWSSVINSCRIHKNLEFAKKAADQLFKMEK 576 (749)
Q Consensus 547 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~ 576 (749)
.|..+...+...|++++|+..++++++++|
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~l~p 32 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALELDP 32 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHCc
Confidence 456666777777778888888887777777
No 261
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=91.42 E-value=1.5 Score=36.50 Aligned_cols=88 Identities=14% Similarity=0.088 Sum_probs=48.3
Q ss_pred HHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHhC----CCCCCHH---hHHHHHHHHHhc
Q 004487 486 ACSHCGLIEEGLQYFNSMTQKYKLRPKKEHYASMVDILCRSGCFDEAEKLMAQM----PFEPDEI---MWSSVINSCRIH 558 (749)
Q Consensus 486 a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~----~~~p~~~---~~~~ll~~~~~~ 558 (749)
+.+..|+++.|++.|.....- .+.....||.-..++.-.|+.++|++-+++. +-+ ... .|-.-...|+..
T Consensus 52 alaE~g~Ld~AlE~F~qal~l--~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~-trtacqa~vQRg~lyRl~ 128 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCL--APERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQ-TRTACQAFVQRGLLYRLL 128 (175)
T ss_pred HHHhccchHHHHHHHHHHHHh--cccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHHHHh
Confidence 345556666666666555421 2224455666666666666666666655554 111 111 122222346777
Q ss_pred CCHHHHHHHHHHHhcCCC
Q 004487 559 KNLEFAKKAADQLFKMEK 576 (749)
Q Consensus 559 g~~~~a~~~~~~~~~~~~ 576 (749)
|+.+.|..-|+.+-+++.
T Consensus 129 g~dd~AR~DFe~AA~LGS 146 (175)
T KOG4555|consen 129 GNDDAARADFEAAAQLGS 146 (175)
T ss_pred CchHHHHHhHHHHHHhCC
Confidence 788888887777777665
No 262
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=91.19 E-value=2.1 Score=38.72 Aligned_cols=87 Identities=15% Similarity=0.206 Sum_probs=66.4
Q ss_pred HHHcCCHHHHHHHHHhC----CCCC---CHHhHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHcCC
Q 004487 523 LCRSGCFDEAEKLMAQM----PFEP---DEIMWSSVINSCRIHKNLEFAKKAADQLFKMEKLRDAAPYVAMSNIYAVAGQ 595 (749)
Q Consensus 523 ~~~~g~~~~A~~~~~~~----~~~p---~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 595 (749)
+.+.|++++|..-|... |..| ..+.|..-..+..+.+..+.|+.-..+++++.| ....+...-+.+|.+..+
T Consensus 105 ~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~p-ty~kAl~RRAeayek~ek 183 (271)
T KOG4234|consen 105 LFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNP-TYEKALERRAEAYEKMEK 183 (271)
T ss_pred hhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCc-hhHHHHHHHHHHHHhhhh
Confidence 45567777777666655 2111 134455555667888999999999999999999 777888888999999999
Q ss_pred chhHHHHHHHHHhCC
Q 004487 596 WESVSQVKKAMRERG 610 (749)
Q Consensus 596 ~~~a~~~~~~m~~~g 610 (749)
+++|.+-++++.+..
T Consensus 184 ~eealeDyKki~E~d 198 (271)
T KOG4234|consen 184 YEEALEDYKKILESD 198 (271)
T ss_pred HHHHHHHHHHHHHhC
Confidence 999999999987754
No 263
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=91.18 E-value=8.9 Score=35.38 Aligned_cols=159 Identities=14% Similarity=0.124 Sum_probs=91.9
Q ss_pred cchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHH
Q 004487 442 IVSWNALISACAQNGDAQATLKSFEDMVQSGYQPDS-VSLLSVLSACSHCGLIEEGLQYFNSMTQKYKLRPKKEHYASMV 520 (749)
Q Consensus 442 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li 520 (749)
+..||-+.--+...|+++.|.+.|+...+ +.|.. .++..-.-++-..|+++-|.+-|...-+ -.|+.. |.+|.
T Consensus 99 ~~vfNyLG~Yl~~a~~fdaa~eaFds~~E--LDp~y~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ---~D~~DP-fR~LW 172 (297)
T COG4785 99 PEVFNYLGIYLTQAGNFDAAYEAFDSVLE--LDPTYNYAHLNRGIALYYGGRYKLAQDDLLAFYQ---DDPNDP-FRSLW 172 (297)
T ss_pred HHHHHHHHHHHHhcccchHHHHHhhhHhc--cCCcchHHHhccceeeeecCchHhhHHHHHHHHh---cCCCCh-HHHHH
Confidence 35677776667788888888888888877 34432 2333333345567888877765544332 233321 22222
Q ss_pred -HHHHHcCCHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCC-------CchhHHHHHHHHHH
Q 004487 521 -DILCRSGCFDEAEKLMAQMPFEPDEIMWSSVINSCRIHKNLEFAKKAADQLFKMEKLR-------DAAPYVAMSNIYAV 592 (749)
Q Consensus 521 -~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~-------~~~~~~~l~~~~~~ 592 (749)
-.-.+.-+..+|..-+.+--...|..-|+.-|-.+.- |.+. .+.+++++.+-.. + -..+|..|+.-|..
T Consensus 173 LYl~E~k~dP~~A~tnL~qR~~~~d~e~WG~~iV~~yL-gkiS-~e~l~~~~~a~a~-~n~~~Ae~LTEtyFYL~K~~l~ 249 (297)
T COG4785 173 LYLNEQKLDPKQAKTNLKQRAEKSDKEQWGWNIVEFYL-GKIS-EETLMERLKADAT-DNTSLAEHLTETYFYLGKYYLS 249 (297)
T ss_pred HHHHHhhCCHHHHHHHHHHHHHhccHhhhhHHHHHHHH-hhcc-HHHHHHHHHhhcc-chHHHHHHHHHHHHHHHHHHhc
Confidence 1222344566666544332223456667766655432 1111 1233333333222 2 25688999999999
Q ss_pred cCCchhHHHHHHHHHhC
Q 004487 593 AGQWESVSQVKKAMRER 609 (749)
Q Consensus 593 ~g~~~~a~~~~~~m~~~ 609 (749)
.|..++|..+++.....
T Consensus 250 ~G~~~~A~~LfKLaian 266 (297)
T COG4785 250 LGDLDEATALFKLAVAN 266 (297)
T ss_pred cccHHHHHHHHHHHHHH
Confidence 99999999999987654
No 264
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=91.18 E-value=17 Score=36.10 Aligned_cols=19 Identities=16% Similarity=-0.041 Sum_probs=13.4
Q ss_pred HHHhcCCHHHHHHHHHHHh
Q 004487 554 SCRIHKNLEFAKKAADQLF 572 (749)
Q Consensus 554 ~~~~~g~~~~a~~~~~~~~ 572 (749)
.+.+.++++.|...|+-.+
T Consensus 255 ~~~~~k~y~~A~~w~~~al 273 (278)
T PF08631_consen 255 KHYKAKNYDEAIEWYELAL 273 (278)
T ss_pred HHHhhcCHHHHHHHHHHHH
Confidence 4566778888888877543
No 265
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.07 E-value=30 Score=38.79 Aligned_cols=117 Identities=15% Similarity=0.140 Sum_probs=66.6
Q ss_pred HHHHHHhHcCCChhHHHHHHccCCCCCcchHHHHH----HHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHhCC
Q 004487 112 NSLVDSYCKIRCLDLARRVFKEMPQKDSVSFNALI----TGFAKEGLNEEAIKLFVEMQHLGFKPSDFTFAAALSAGVGL 187 (749)
Q Consensus 112 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li----~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~ 187 (749)
..-+++..+...++.|..+-+.-.- |...-..+. .-+.+.|++++|...|-+-... +.|. .+++-+-..
T Consensus 338 e~kL~iL~kK~ly~~Ai~LAk~~~~-d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~s-----~Vi~kfLda 410 (933)
T KOG2114|consen 338 ETKLDILFKKNLYKVAINLAKSQHL-DEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEPS-----EVIKKFLDA 410 (933)
T ss_pred HHHHHHHHHhhhHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CChH-----HHHHHhcCH
Confidence 3445556666666777766654332 222222222 2344678888888877665432 2332 234444333
Q ss_pred CChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHcCCChHHHHHHHccCC
Q 004487 188 ADIALGRQVHAFVVKTNFVENVFVANALLDLYSKHDCVVEARKLFGEMP 236 (749)
Q Consensus 188 ~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~ 236 (749)
.....-...++.+.+.|+..... -+.|+..|.|.++.+.-.++.+...
T Consensus 411 q~IknLt~YLe~L~~~gla~~dh-ttlLLncYiKlkd~~kL~efI~~~~ 458 (933)
T KOG2114|consen 411 QRIKNLTSYLEALHKKGLANSDH-TTLLLNCYIKLKDVEKLTEFISKCD 458 (933)
T ss_pred HHHHHHHHHHHHHHHcccccchh-HHHHHHHHHHhcchHHHHHHHhcCC
Confidence 44444445566666777654333 3678888888888888777776655
No 266
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=91.06 E-value=9.3 Score=38.14 Aligned_cols=127 Identities=17% Similarity=0.096 Sum_probs=76.1
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCC-----CHHHHHHHHHHHhccCCHHHHHHHHHHh---HHhcCCCCChHHHHH
Q 004487 447 ALISACAQNGDAQATLKSFEDMVQSGYQP-----DSVSLLSVLSACSHCGLIEEGLQYFNSM---TQKYKLRPKKEHYAS 518 (749)
Q Consensus 447 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p-----~~~t~~~ll~a~~~~g~~~~a~~~~~~m---~~~~~~~p~~~~~~~ 518 (749)
+|..++...+.++++++.|+...+---.. .-..+..|-+-|....++++|.-+.... .+.+++..-..-|.+
T Consensus 127 ~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~ 206 (518)
T KOG1941|consen 127 SMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRA 206 (518)
T ss_pred hHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHH
Confidence 35556666677888888887766521111 1235777777788888888877655432 334444333333333
Q ss_pred H-----HHHHHHcCCHHHHHHHHHhC-------CCCC-CHHhHHHHHHHHHhcCCHHHHHHHHHHHhc
Q 004487 519 M-----VDILCRSGCFDEAEKLMAQM-------PFEP-DEIMWSSVINSCRIHKNLEFAKKAADQLFK 573 (749)
Q Consensus 519 l-----i~~~~~~g~~~~A~~~~~~~-------~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 573 (749)
+ .-+|...|++.+|.+.-++. +-.| .......+.+.|+..|+.|.|..-|+.+..
T Consensus 207 ~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am~ 274 (518)
T KOG1941|consen 207 MSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQAMG 274 (518)
T ss_pred HHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHH
Confidence 3 33456666666555555443 4333 244556677788888888888888877654
No 267
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.03 E-value=2.5 Score=41.47 Aligned_cols=161 Identities=12% Similarity=0.065 Sum_probs=119.3
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHH----HHHHHHHcCCH
Q 004487 454 QNGDAQATLKSFEDMVQSGYQPDSVSLLSVLSACSHCGLIEEGLQYFNSMTQKYKLRPKKEHYAS----MVDILCRSGCF 529 (749)
Q Consensus 454 ~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~----li~~~~~~g~~ 529 (749)
-.|+..+|-..++++.+. .+.|...+.-.=.+|...|+.+.....++++..+ ..|+...|.- +.-++..+|-+
T Consensus 115 ~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~--wn~dlp~~sYv~GmyaFgL~E~g~y 191 (491)
T KOG2610|consen 115 GRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK--WNADLPCYSYVHGMYAFGLEECGIY 191 (491)
T ss_pred ccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhccc--cCCCCcHHHHHHHHHHhhHHHhccc
Confidence 468888999999999885 6777788888889999999999999999888754 3566544443 33456689999
Q ss_pred HHHHHHHHhC-CCCC-CHHhHHHHHHHHHhcCCHHHHHHHHHHHhcCCC---CCCchhHHHHHHHHHHcCCchhHHHHHH
Q 004487 530 DEAEKLMAQM-PFEP-DEIMWSSVINSCRIHKNLEFAKKAADQLFKMEK---LRDAAPYVAMSNIYAVAGQWESVSQVKK 604 (749)
Q Consensus 530 ~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 604 (749)
++|++.-++. .+.| |.-.-.++.......|+..++.++.++--..=. -.-...|-..+-.|...+.++.|.+++.
T Consensus 192 ~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD 271 (491)
T KOG2610|consen 192 DDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIYD 271 (491)
T ss_pred hhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHHH
Confidence 9999999887 5555 444556677778888999999988776543211 0224556777788888899999999998
Q ss_pred HHHhCCCccCCce
Q 004487 605 AMRERGVRKVTAY 617 (749)
Q Consensus 605 ~m~~~g~~~~~~~ 617 (749)
.=.-..+.++.++
T Consensus 272 ~ei~k~l~k~Da~ 284 (491)
T KOG2610|consen 272 REIWKRLEKDDAV 284 (491)
T ss_pred HHHHHHhhccchh
Confidence 7544445555553
No 268
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=90.84 E-value=1.6 Score=41.64 Aligned_cols=98 Identities=16% Similarity=0.202 Sum_probs=60.4
Q ss_pred HHHHHhcCC--CCCcchHHHHHHHHHcC-----CChhHHHHHHHHhHhcCCCCCCcchHHHHHHhcCCCC----------
Q 004487 25 ARELFNSMV--DRTAVSWTILIGGYSQK-----NQFREAFKLFVDMRTDGGSDPDYVTFATLLSGCSEPD---------- 87 (749)
Q Consensus 25 A~~~f~~~~--~~~~~~~~~li~~~~~~-----g~~~~a~~l~~~m~~~~g~~p~~~~~~~ll~~~~~~~---------- 87 (749)
..+.|...+ ++|-.+|-+++..+... +..+=....++.|++- |+.-|..+|+.||+.+-+..
T Consensus 53 ~e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~ey-GVerDl~vYk~LlnvfPKgkfiP~nvfQ~~ 131 (406)
T KOG3941|consen 53 VEKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEY-GVERDLDVYKGLLNVFPKGKFIPQNVFQKV 131 (406)
T ss_pred hhhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHh-cchhhHHHHHHHHHhCcccccccHHHHHHH
Confidence 345565555 56667777777766543 3444455556667766 78888888888877654432
Q ss_pred ------ChHHHHHHHHHHHHhCCCCchhHHHHHHHHhHcCCC
Q 004487 88 ------TANELIQVHADIIKFGYNSILIICNSLVDSYCKIRC 123 (749)
Q Consensus 88 ------~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~ 123 (749)
.-.-+..++++|.-.|+.||..+-..|++++.+.+-
T Consensus 132 F~HYP~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~ 173 (406)
T KOG3941|consen 132 FLHYPQQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNF 173 (406)
T ss_pred HhhCchhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhccccc
Confidence 122345566666666666666666666666665543
No 269
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=90.77 E-value=0.25 Score=43.48 Aligned_cols=84 Identities=20% Similarity=0.269 Sum_probs=61.2
Q ss_pred HHHhcCCCCChHHHHHHHHHHHHhCCCCchhHHHHHHHHhHcCCChhHHHHHHccCCCCCcchHHHHHHHHHhCCChhHH
Q 004487 79 LLSGCSEPDTANELIQVHADIIKFGYNSILIICNSLVDSYCKIRCLDLARRVFKEMPQKDSVSFNALITGFAKEGLNEEA 158 (749)
Q Consensus 79 ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A 158 (749)
++..+.+.+.+......++.+.+.+...+....+.|+..|++.++.+...++++.... .-...++..+-+.|.+++|
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~~---yd~~~~~~~c~~~~l~~~a 89 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTSNN---YDLDKALRLCEKHGLYEEA 89 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSSS---S-CTHHHHHHHTTTSHHHH
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccccc---cCHHHHHHHHHhcchHHHH
Confidence 4566677778888888888888877777888999999999999888888888884333 3345566666777777777
Q ss_pred HHHHHHH
Q 004487 159 IKLFVEM 165 (749)
Q Consensus 159 ~~l~~~m 165 (749)
.-++.++
T Consensus 90 ~~Ly~~~ 96 (143)
T PF00637_consen 90 VYLYSKL 96 (143)
T ss_dssp HHHHHCC
T ss_pred HHHHHHc
Confidence 7766654
No 270
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=89.89 E-value=0.58 Score=29.45 Aligned_cols=26 Identities=15% Similarity=0.271 Sum_probs=20.3
Q ss_pred hHHHHHHHHHHcCCchhHHHHHHHHH
Q 004487 582 PYVAMSNIYAVAGQWESVSQVKKAMR 607 (749)
Q Consensus 582 ~~~~l~~~~~~~g~~~~a~~~~~~m~ 607 (749)
+|..|+++|.+.|+|++|.+++++..
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 46778888999999999988888743
No 271
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=88.92 E-value=8.5 Score=38.45 Aligned_cols=92 Identities=16% Similarity=0.342 Sum_probs=55.6
Q ss_pred HHHHHHHHhhCCC-------CCcchHHHHHHHHHhcCC----HHHHHHHHHHHHHCCCCCCHH-H-HHHHHHHHhccCC-
Q 004487 427 LKDAIQTFKEMPE-------RNIVSWNALISACAQNGD----AQATLKSFEDMVQSGYQPDSV-S-LLSVLSACSHCGL- 492 (749)
Q Consensus 427 ~~~A~~~~~~~~~-------~~~~~~~~li~~~~~~g~----~~~A~~~~~~m~~~g~~p~~~-t-~~~ll~a~~~~g~- 492 (749)
..+|..+|+.|++ ++-.++..|+.. ..++ .+.+..+|+.+.+.|+..+.. . ...+|..+.....
T Consensus 119 ~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~ 196 (297)
T PF13170_consen 119 IQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDVEELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQE 196 (297)
T ss_pred HHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccHHHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchH
Confidence 4456667777663 344455555443 2222 356777888888888776544 3 3334433332222
Q ss_pred -HHHHHHHHHHhHHhcCCCCChHHHHHHHH
Q 004487 493 -IEEGLQYFNSMTQKYKLRPKKEHYASMVD 521 (749)
Q Consensus 493 -~~~a~~~~~~m~~~~~~~p~~~~~~~li~ 521 (749)
+.++.++++.+.+. ++++...+|..+.-
T Consensus 197 ~v~r~~~l~~~l~~~-~~kik~~~yp~lGl 225 (297)
T PF13170_consen 197 KVARVIELYNALKKN-GVKIKYMHYPTLGL 225 (297)
T ss_pred HHHHHHHHHHHHHHc-CCccccccccHHHH
Confidence 45788888888765 89888888876643
No 272
>PRK15331 chaperone protein SicA; Provisional
Probab=88.83 E-value=6.4 Score=34.87 Aligned_cols=82 Identities=13% Similarity=0.011 Sum_probs=42.1
Q ss_pred HhcCCHHHHHHHHhhCC---CCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHH
Q 004487 422 AKSGSLKDAIQTFKEMP---ERNIVSWNALISACAQNGDAQATLKSFEDMVQSGYQPDSVSLLSVLSACSHCGLIEEGLQ 498 (749)
Q Consensus 422 ~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~ 498 (749)
...|++++|..+|+-+. .-+..-|..|...+-..+++++|+..|......+. -|...+-....++...|+.+.|+.
T Consensus 48 y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~-~dp~p~f~agqC~l~l~~~~~A~~ 126 (165)
T PRK15331 48 YNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLK-NDYRPVFFTGQCQLLMRKAAKARQ 126 (165)
T ss_pred HHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc-CCCCccchHHHHHHHhCCHHHHHH
Confidence 34566666666665443 12333455555555556666666666655544321 122233334445555666666666
Q ss_pred HHHHhH
Q 004487 499 YFNSMT 504 (749)
Q Consensus 499 ~~~~m~ 504 (749)
.|+...
T Consensus 127 ~f~~a~ 132 (165)
T PRK15331 127 CFELVN 132 (165)
T ss_pred HHHHHH
Confidence 665544
No 273
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=88.33 E-value=33 Score=35.22 Aligned_cols=149 Identities=9% Similarity=0.018 Sum_probs=85.2
Q ss_pred hcccCcHHHHHHHHHHHHHhCCC-CchhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCcc---------------hHHHHH
Q 004487 386 SAELASLSLGKQLHSFVIRSGFM-SNVFSGSALLDMYAKSGSLKDAIQTFKEMPERNIV---------------SWNALI 449 (749)
Q Consensus 386 ~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~---------------~~~~li 449 (749)
+...++.+.+.++-..+.+..-. .+....+. .++.-.++.+.|...|++...-|+. .|.-=.
T Consensus 179 l~~~~~~~~a~~ea~~ilkld~~n~~al~vrg--~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~g 256 (486)
T KOG0550|consen 179 LAFLGDYDEAQSEAIDILKLDATNAEALYVRG--LCLYYNDNADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKKERG 256 (486)
T ss_pred hhhcccchhHHHHHHHHHhcccchhHHHHhcc--cccccccchHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHHhhh
Confidence 35567777777766666554311 11111111 1222346778888888877643222 122223
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCC---CCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCh-HHHHHHHHHHHH
Q 004487 450 SACAQNGDAQATLKSFEDMVQSG---YQPDSVSLLSVLSACSHCGLIEEGLQYFNSMTQKYKLRPKK-EHYASMVDILCR 525 (749)
Q Consensus 450 ~~~~~~g~~~~A~~~~~~m~~~g---~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~-~~~~~li~~~~~ 525 (749)
+-..+.|++..|.+.|.+.+... .+|+...|.....+..+.|+.++|+.--+... .+.|.- ..|-.-..++.-
T Consensus 257 N~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al---~iD~syikall~ra~c~l~ 333 (486)
T KOG0550|consen 257 NDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEAL---KIDSSYIKALLRRANCHLA 333 (486)
T ss_pred hhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhh---hcCHHHHHHHHHHHHHHHH
Confidence 34567788888888888887621 33444456566666778888888888776554 333321 122222334455
Q ss_pred cCCHHHHHHHHHhC
Q 004487 526 SGCFDEAEKLMAQM 539 (749)
Q Consensus 526 ~g~~~~A~~~~~~~ 539 (749)
.+++++|.+-+++.
T Consensus 334 le~~e~AV~d~~~a 347 (486)
T KOG0550|consen 334 LEKWEEAVEDYEKA 347 (486)
T ss_pred HHHHHHHHHHHHHH
Confidence 66788888877776
No 274
>PRK09687 putative lyase; Provisional
Probab=88.24 E-value=29 Score=34.47 Aligned_cols=235 Identities=10% Similarity=-0.015 Sum_probs=106.9
Q ss_pred cchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCCcccHHHHHHHHHhCCCh----hHHHHHHHHHHHCCCCcCHHhHHHHH
Q 004487 308 SEVKVANSLVDMYAKCGRFEEAKEIFANLSHISTVPWTAMISAYVQKGNL----EEALNLFIEMCRANISADQATFASIL 383 (749)
Q Consensus 308 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~----~~A~~l~~~m~~~g~~p~~~t~~~ll 383 (749)
+|..+....+..+.+.|..+....+..-+...|...-...+.++.+.|+. .+++..+..+... .|+...-...+
T Consensus 35 ~d~~vR~~A~~aL~~~~~~~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~--D~d~~VR~~A~ 112 (280)
T PRK09687 35 HNSLKRISSIRVLQLRGGQDVFRLAIELCSSKNPIERDIGADILSQLGMAKRCQDNVFNILNNLALE--DKSACVRASAI 112 (280)
T ss_pred CCHHHHHHHHHHHHhcCcchHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhc--CCCHHHHHHHH
Confidence 34444455555555555433333333333344444444455556666653 3566666655332 34544444444
Q ss_pred HHhcccCcHHH--HHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCcchHHHHHHHHHhcC-CHHH
Q 004487 384 RASAELASLSL--GKQLHSFVIRSGFMSNVFSGSALLDMYAKSGSLKDAIQTFKEMPERNIVSWNALISACAQNG-DAQA 460 (749)
Q Consensus 384 ~~~~~~~~~~~--a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g-~~~~ 460 (749)
.++...+.... .......+...-..++..+-...+.++++.|+.+....+..-+..+|...-..-+.++.+.+ +...
T Consensus 113 ~aLG~~~~~~~~~~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~~~~~ai~~L~~~L~d~~~~VR~~A~~aLg~~~~~~~~ 192 (280)
T PRK09687 113 NATGHRCKKNPLYSPKIVEQSQITAFDKSTNVRFAVAFALSVINDEAAIPLLINLLKDPNGDVRNWAAFALNSNKYDNPD 192 (280)
T ss_pred HHHhcccccccccchHHHHHHHHHhhCCCHHHHHHHHHHHhccCCHHHHHHHHHHhcCCCHHHHHHHHHHHhcCCCCCHH
Confidence 44444332110 11112222222223344555556666666665433333333333444444444444444432 1334
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHhC-
Q 004487 461 TLKSFEDMVQSGYQPDSVSLLSVLSACSHCGLIEEGLQYFNSMTQKYKLRPKKEHYASMVDILCRSGCFDEAEKLMAQM- 539 (749)
Q Consensus 461 A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~- 539 (749)
+...+..+.. .+|...-...+.+..+.|+ .++...+-...+. ++ .....+.+++..|.. +|...+.++
T Consensus 193 ~~~~L~~~L~---D~~~~VR~~A~~aLg~~~~-~~av~~Li~~L~~----~~--~~~~a~~ALg~ig~~-~a~p~L~~l~ 261 (280)
T PRK09687 193 IREAFVAMLQ---DKNEEIRIEAIIGLALRKD-KRVLSVLIKELKK----GT--VGDLIIEAAGELGDK-TLLPVLDTLL 261 (280)
T ss_pred HHHHHHHHhc---CCChHHHHHHHHHHHccCC-hhHHHHHHHHHcC----Cc--hHHHHHHHHHhcCCH-hHHHHHHHHH
Confidence 5555555543 3455555556666666665 3444444333321 12 223455666666663 455555554
Q ss_pred CCCCCHHhHHHHHHHH
Q 004487 540 PFEPDEIMWSSVINSC 555 (749)
Q Consensus 540 ~~~p~~~~~~~ll~~~ 555 (749)
.-.||..+-...+.+|
T Consensus 262 ~~~~d~~v~~~a~~a~ 277 (280)
T PRK09687 262 YKFDDNEIITKAIDKL 277 (280)
T ss_pred hhCCChhHHHHHHHHH
Confidence 2234544444444443
No 275
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=88.09 E-value=18 Score=36.11 Aligned_cols=147 Identities=13% Similarity=0.208 Sum_probs=81.7
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc--cC----CHHHHHHHHHHhHHhcCCCC--ChHHHHHHHHHHHHcCCH
Q 004487 458 AQATLKSFEDMVQSGYQPDSVSLLSVLSACSH--CG----LIEEGLQYFNSMTQKYKLRP--KKEHYASMVDILCRSGCF 529 (749)
Q Consensus 458 ~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~--~g----~~~~a~~~~~~m~~~~~~~p--~~~~~~~li~~~~~~g~~ 529 (749)
+++.+.+++.|.+.|++-+..+|.+....... .. ...++..+++.|++++..-- +...+..|+.. +.++.
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~ 155 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDV 155 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccH
Confidence 44567788999999998888777664433322 22 35678899999998765433 33444444332 44444
Q ss_pred HH----HHHHHHhC---CCCC-CHHhH-HHHHHHHHhcCC--HHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHcCCchh
Q 004487 530 DE----AEKLMAQM---PFEP-DEIMW-SSVINSCRIHKN--LEFAKKAADQLFKMEKLRDAAPYVAMSNIYAVAGQWES 598 (749)
Q Consensus 530 ~~----A~~~~~~~---~~~p-~~~~~-~~ll~~~~~~g~--~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 598 (749)
++ ++..++.+ ++.. |..-+ ..++..+-...+ +..+..+++.+.+.+.+.....|-.++-+-.-.+..++
T Consensus 156 e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~lGlLall~~~~~~ 235 (297)
T PF13170_consen 156 EELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTLGLLALLEDPEEK 235 (297)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHHHHHHhcCCchHH
Confidence 33 33334333 5554 33333 333333322222 45677888888887774555556655544434444424
Q ss_pred HHHHHHHH
Q 004487 599 VSQVKKAM 606 (749)
Q Consensus 599 a~~~~~~m 606 (749)
...-+..+
T Consensus 236 ~~~~i~ev 243 (297)
T PF13170_consen 236 IVEEIKEV 243 (297)
T ss_pred HHHHHHHH
Confidence 44444443
No 276
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=88.09 E-value=15 Score=31.05 Aligned_cols=139 Identities=12% Similarity=0.199 Sum_probs=68.3
Q ss_pred HhCCChhHHHHHHHHHHHCCCCcCHHhHHHHHHHhcccCcHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHH
Q 004487 352 VQKGNLEEALNLFIEMCRANISADQATFASILRASAELASLSLGKQLHSFVIRSGFMSNVFSGSALLDMYAKSGSLKDAI 431 (749)
Q Consensus 352 ~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~ 431 (749)
.-.|..++..++..+...+ .+..-++.++--.....+-+...+.++ .-|-..|.. .||++....
T Consensus 13 ildG~V~qGveii~k~v~S---sni~E~NWvICNiiDaa~C~yvv~~Ld---sIGkiFDis----------~C~NlKrVi 76 (161)
T PF09205_consen 13 ILDGDVKQGVEIIEKTVNS---SNIKEYNWVICNIIDAADCDYVVETLD---SIGKIFDIS----------KCGNLKRVI 76 (161)
T ss_dssp HHTT-HHHHHHHHHHHHHH---S-HHHHTHHHHHHHHH--HHHHHHHHH---HHGGGS-GG----------G-S-THHHH
T ss_pred HHhchHHHHHHHHHHHcCc---CCccccceeeeecchhhchhHHHHHHH---HHhhhcCch----------hhcchHHHH
Confidence 3456777777777776653 234444444433333333333333222 222222221 233333333
Q ss_pred HHHhhCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCC
Q 004487 432 QTFKEMPERNIVSWNALISACAQNGDAQATLKSFEDMVQSGYQPDSVSLLSVLSACSHCGLIEEGLQYFNSMTQKYKL 509 (749)
Q Consensus 432 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~ 509 (749)
..+-.+. .+......-+..+...|+-++-.+++.++... -+|+......+..||.+.|+..++.+++.+..++ |+
T Consensus 77 ~C~~~~n-~~se~vD~ALd~lv~~~kkDqLdki~~~l~kn-~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACek-G~ 151 (161)
T PF09205_consen 77 ECYAKRN-KLSEYVDLALDILVKQGKKDQLDKIYNELKKN-EEINPEFLVKIANAYKKLGNTREANELLKEACEK-GL 151 (161)
T ss_dssp HHHHHTT----HHHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHT-T-
T ss_pred HHHHHhc-chHHHHHHHHHHHHHhccHHHHHHHHHHHhhc-cCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHh-ch
Confidence 3333222 12223344566677778888877888777653 4677777778888888888888888888777654 44
No 277
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=87.91 E-value=63 Score=38.03 Aligned_cols=79 Identities=16% Similarity=0.238 Sum_probs=38.7
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH--HHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHHc
Q 004487 449 ISACAQNGDAQATLKSFEDMVQSGYQPDSVS--LLSVLSACSHCGLIEEGLQYFNSMTQKYKLRPKKEHYASMVDILCRS 526 (749)
Q Consensus 449 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t--~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~ 526 (749)
+.+|...|++.+|+.+..+|.. .-|... -..|.+-+...++.-+|-++...... .| .--+..|+++
T Consensus 972 l~a~~~~~dWr~~l~~a~ql~~---~~de~~~~a~~L~s~L~e~~kh~eAa~il~e~~s----d~-----~~av~ll~ka 1039 (1265)
T KOG1920|consen 972 LKAYKECGDWREALSLAAQLSE---GKDELVILAEELVSRLVEQRKHYEAAKILLEYLS----DP-----EEAVALLCKA 1039 (1265)
T ss_pred HHHHHHhccHHHHHHHHHhhcC---CHHHHHHHHHHHHHHHHHcccchhHHHHHHHHhc----CH-----HHHHHHHhhH
Confidence 4445555555555555554422 112211 13445555666666666655544332 12 1234556666
Q ss_pred CCHHHHHHHHHhC
Q 004487 527 GCFDEAEKLMAQM 539 (749)
Q Consensus 527 g~~~~A~~~~~~~ 539 (749)
..+++|..+....
T Consensus 1040 ~~~~eAlrva~~~ 1052 (1265)
T KOG1920|consen 1040 KEWEEALRVASKA 1052 (1265)
T ss_pred hHHHHHHHHHHhc
Confidence 6666666665544
No 278
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=87.83 E-value=0.84 Score=28.68 Aligned_cols=28 Identities=14% Similarity=0.083 Sum_probs=21.3
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHhcC
Q 004487 547 MWSSVINSCRIHKNLEFAKKAADQLFKM 574 (749)
Q Consensus 547 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 574 (749)
+|..|...|...|++++|+.++++++.+
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l 28 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALAL 28 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 4677888888888888888888885543
No 279
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=87.83 E-value=1.6 Score=28.93 Aligned_cols=33 Identities=21% Similarity=0.400 Sum_probs=21.2
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH
Q 004487 444 SWNALISACAQNGDAQATLKSFEDMVQSGYQPDSV 478 (749)
Q Consensus 444 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 478 (749)
+|..+...|.+.|++++|.++|++.++ ..|+..
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~--~~P~~~ 35 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALA--LDPDDP 35 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH--HCcCCH
Confidence 455666667777777777777777766 345443
No 280
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=87.67 E-value=27 Score=33.48 Aligned_cols=57 Identities=7% Similarity=0.046 Sum_probs=46.0
Q ss_pred HHHHHhcCCHHHHHHHHHHHhcCCCCCC---chhHHHHHHHHHHcCCchhHHHHHHHHHhC
Q 004487 552 INSCRIHKNLEFAKKAADQLFKMEKLRD---AAPYVAMSNIYAVAGQWESVSQVKKAMRER 609 (749)
Q Consensus 552 l~~~~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 609 (749)
..-|.+.|.+.-|..-++++++.-| .. ...+..|..+|...|..++|.+..+-+...
T Consensus 174 aryY~kr~~~~AA~nR~~~v~e~y~-~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~N 233 (254)
T COG4105 174 ARYYLKRGAYVAAINRFEEVLENYP-DTSAVREALARLEEAYYALGLTDEAKKTAKVLGAN 233 (254)
T ss_pred HHHHHHhcChHHHHHHHHHHHhccc-cccchHHHHHHHHHHHHHhCChHHHHHHHHHHHhc
Confidence 3457788999999999999998866 43 345667888999999999999998887654
No 281
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=87.57 E-value=8.4 Score=34.19 Aligned_cols=118 Identities=14% Similarity=0.210 Sum_probs=51.2
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHH-----HHHHHHc
Q 004487 453 AQNGDAQATLKSFEDMVQSGYQPDSV-SLLSVLSACSHCGLIEEGLQYFNSMTQKYKLRPKKEHYASM-----VDILCRS 526 (749)
Q Consensus 453 ~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l-----i~~~~~~ 526 (749)
++.+..++|+.-|.++.+.|..-=.+ ............|+-..|...|+++-.. .|.+....-+ .-++...
T Consensus 69 A~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~d---t~~P~~~rd~ARlraa~lLvD~ 145 (221)
T COG4649 69 AQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAAD---TSIPQIGRDLARLRAAYLLVDN 145 (221)
T ss_pred HHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhcc---CCCcchhhHHHHHHHHHHHhcc
Confidence 34444555555555555544322111 1111222244455555555555555433 1111111111 1123445
Q ss_pred CCHHHHHHHHHhCCCC--C-CHHhHHHHHHHHHhcCCHHHHHHHHHHHhc
Q 004487 527 GCFDEAEKLMAQMPFE--P-DEIMWSSVINSCRIHKNLEFAKKAADQLFK 573 (749)
Q Consensus 527 g~~~~A~~~~~~~~~~--p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 573 (749)
|.+++.....+.+... | ....-.+|.-+-.+.|++..|...|+.+..
T Consensus 146 gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 146 GSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred ccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 5555555555554211 1 122334444455566666666666666554
No 282
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=87.51 E-value=3.8 Score=39.98 Aligned_cols=76 Identities=17% Similarity=0.314 Sum_probs=60.6
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhcCCC---CcccHHHHHHHHHhCCChhHHHHHHHHHHH-----CCCCcCHHhHHH
Q 004487 310 VKVANSLVDMYAKCGRFEEAKEIFANLSHI---STVPWTAMISAYVQKGNLEEALNLFIEMCR-----ANISADQATFAS 381 (749)
Q Consensus 310 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~-----~g~~p~~~t~~~ 381 (749)
..++..++..+..+|+.+.+.+.++++.+. +...|..++.+|.++|+...|+..|+++.+ .|+.|...+...
T Consensus 153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~ 232 (280)
T COG3629 153 IKALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRAL 232 (280)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHH
Confidence 345677889999999999999999988754 445599999999999999999999999866 567776665544
Q ss_pred HHHH
Q 004487 382 ILRA 385 (749)
Q Consensus 382 ll~~ 385 (749)
....
T Consensus 233 y~~~ 236 (280)
T COG3629 233 YEEI 236 (280)
T ss_pred HHHH
Confidence 4433
No 283
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=87.40 E-value=4.1 Score=28.33 Aligned_cols=51 Identities=16% Similarity=0.191 Sum_probs=37.1
Q ss_pred hHHHHHHHHHHcCCchhHHHHHHHHHhCCCccCCceeEEEeCCEEEEEEeCCCCCcChHHHHHHHHHHHHHHHHcCC
Q 004487 582 PYVAMSNIYAVAGQWESVSQVKKAMRERGVRKVTAYSWVELKSKVHVFTANDELHPQTNEIRRKIENLMQEMKKEGY 658 (749)
Q Consensus 582 ~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~s~~~~~~~~~~f~~~~~~~~~~~~~~~~l~~l~~~m~~~g~ 658 (749)
....++-++.+.|++++|.+..+.+.+. +|...+.......+.++|++.|.
T Consensus 3 ~lY~lAig~ykl~~Y~~A~~~~~~lL~~--------------------------eP~N~Qa~~L~~~i~~~i~kdgl 53 (53)
T PF14853_consen 3 CLYYLAIGHYKLGEYEKARRYCDALLEI--------------------------EPDNRQAQSLKELIEDKIQKDGL 53 (53)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHH--------------------------TTS-HHHHHHHHHHHHHHHHTTT
T ss_pred hHHHHHHHHHHhhhHHHHHHHHHHHHhh--------------------------CCCcHHHHHHHHHHHHHHhccCC
Confidence 3557888999999999999999998764 45555555555667777877774
No 284
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=87.28 E-value=9.1 Score=38.18 Aligned_cols=162 Identities=12% Similarity=0.136 Sum_probs=99.6
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHH-CCCCCCH---HHHHHHHHHHhccCCHHHHHHHHHHhHHhcCC--CC--ChHH
Q 004487 444 SWNALISACAQNGDAQATLKSFEDMVQ-SGYQPDS---VSLLSVLSACSHCGLIEEGLQYFNSMTQKYKL--RP--KKEH 515 (749)
Q Consensus 444 ~~~~li~~~~~~g~~~~A~~~~~~m~~-~g~~p~~---~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~--~p--~~~~ 515 (749)
.|-.+..++-+.-++.+++.+-..-.. .|..|.. ....++..|....+.++++++.|+...+-..- .| ...+
T Consensus 85 a~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqv 164 (518)
T KOG1941|consen 85 AYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQV 164 (518)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeeh
Confidence 344444555444455555554433222 2333311 23334566677777899999999877642111 12 2357
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHhC-------CCCCCHHhHH-----HHHHHHHhcCCHHHHHHHHHHHhcCCCC-CC---
Q 004487 516 YASMVDILCRSGCFDEAEKLMAQM-------PFEPDEIMWS-----SVINSCRIHKNLEFAKKAADQLFKMEKL-RD--- 579 (749)
Q Consensus 516 ~~~li~~~~~~g~~~~A~~~~~~~-------~~~p~~~~~~-----~ll~~~~~~g~~~~a~~~~~~~~~~~~~-~~--- 579 (749)
|..|...|.+..++++|.-+..+. +++.=..-|. -+.-+++..|.+-.|.+..+++.++... .|
T Consensus 165 cv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~ 244 (518)
T KOG1941|consen 165 CVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRAL 244 (518)
T ss_pred hhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHH
Confidence 889999999999999876554443 3332122333 2345789999999999998888664320 23
Q ss_pred -chhHHHHHHHHHHcCCchhHHHHHHH
Q 004487 580 -AAPYVAMSNIYAVAGQWESVSQVKKA 605 (749)
Q Consensus 580 -~~~~~~l~~~~~~~g~~~~a~~~~~~ 605 (749)
......++++|...|+.|.|-.-++.
T Consensus 245 ~arc~~~~aDIyR~~gd~e~af~rYe~ 271 (518)
T KOG1941|consen 245 QARCLLCFADIYRSRGDLERAFRRYEQ 271 (518)
T ss_pred HHHHHHHHHHHHHhcccHhHHHHHHHH
Confidence 34455899999999998887665554
No 285
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=87.17 E-value=44 Score=35.38 Aligned_cols=96 Identities=11% Similarity=0.229 Sum_probs=64.5
Q ss_pred HHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHhCC-C-CCC--HHhHHHHHHHHH
Q 004487 481 LSVLSACSHCGLIEEGLQYFNSMTQKYKLRPKKEHYASMVDILCRSGCFDEAEKLMAQMP-F-EPD--EIMWSSVINSCR 556 (749)
Q Consensus 481 ~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~-~-~p~--~~~~~~ll~~~~ 556 (749)
..+..++-+.|+.++|.+.|.+|.+.+...-.......|+..|...+.+.++..++.+-. + -|. ...|++.+-..+
T Consensus 263 rRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti~YTaALLkaR 342 (539)
T PF04184_consen 263 RRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSATICYTAALLKAR 342 (539)
T ss_pred HHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHHHHHHHHHHHH
Confidence 345556677899999999999998664322234456678899999999999999988873 1 233 455665554444
Q ss_pred hcCC---------------HHHHHHHHHHHhcCCC
Q 004487 557 IHKN---------------LEFAKKAADQLFKMEK 576 (749)
Q Consensus 557 ~~g~---------------~~~a~~~~~~~~~~~~ 576 (749)
.-++ -..|.+++.++++.+|
T Consensus 343 av~d~fs~e~a~rRGls~ae~~aveAi~RAvefNP 377 (539)
T PF04184_consen 343 AVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNP 377 (539)
T ss_pred hhccccCchhhhhcCCChhHHHHHHHHHHHHHhCC
Confidence 3333 1235577888877776
No 286
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=87.07 E-value=21 Score=31.57 Aligned_cols=87 Identities=14% Similarity=0.124 Sum_probs=45.7
Q ss_pred HhccCCHHHHHHHHHHhHHhcCCCCChH-HHHHHHHHHHHcCCHHHHHHHHHhC-CCCCCHHhHHHHHHHHHhcCCHHHH
Q 004487 487 CSHCGLIEEGLQYFNSMTQKYKLRPKKE-HYASMVDILCRSGCFDEAEKLMAQM-PFEPDEIMWSSVINSCRIHKNLEFA 564 (749)
Q Consensus 487 ~~~~g~~~~a~~~~~~m~~~~~~~p~~~-~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~ll~~~~~~g~~~~a 564 (749)
-...++.+++..+++.+. -+.|... +-..-.-.+.+.|++.+|..++++. .-.|....-.+|+.-|.....-..=
T Consensus 20 al~~~~~~D~e~lL~ALr---vLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~~~D~~W 96 (160)
T PF09613_consen 20 ALRLGDPDDAEALLDALR---VLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLYALGDPSW 96 (160)
T ss_pred HHccCChHHHHHHHHHHH---HhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHHcCChHH
Confidence 445566777777776665 3445432 2122233456677777777777776 2233333444555555444333333
Q ss_pred HHHHHHHhcCCC
Q 004487 565 KKAADQLFKMEK 576 (749)
Q Consensus 565 ~~~~~~~~~~~~ 576 (749)
....+++++.++
T Consensus 97 r~~A~evle~~~ 108 (160)
T PF09613_consen 97 RRYADEVLESGA 108 (160)
T ss_pred HHHHHHHHhcCC
Confidence 344555555554
No 287
>PRK09687 putative lyase; Provisional
Probab=87.05 E-value=34 Score=33.98 Aligned_cols=75 Identities=9% Similarity=-0.032 Sum_probs=41.4
Q ss_pred CcchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCCcccHHHHHHHHHhCCChhHHHHHHHHHHHCCCCcCHHhHHHHHHHh
Q 004487 307 ISEVKVANSLVDMYAKCGRFEEAKEIFANLSHISTVPWTAMISAYVQKGNLEEALNLFIEMCRANISADQATFASILRAS 386 (749)
Q Consensus 307 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~ 386 (749)
.++..+....+.++++.|+.+....+.+.+...+ ..-..+.++...|.. +|+..+.++... .||...-...+.+|
T Consensus 203 D~~~~VR~~A~~aLg~~~~~~av~~Li~~L~~~~--~~~~a~~ALg~ig~~-~a~p~L~~l~~~--~~d~~v~~~a~~a~ 277 (280)
T PRK09687 203 DKNEEIRIEAIIGLALRKDKRVLSVLIKELKKGT--VGDLIIEAAGELGDK-TLLPVLDTLLYK--FDDNEIITKAIDKL 277 (280)
T ss_pred CCChHHHHHHHHHHHccCChhHHHHHHHHHcCCc--hHHHHHHHHHhcCCH-hHHHHHHHHHhh--CCChhHHHHHHHHH
Confidence 3455555666666666666443333333333333 234566777777774 677777777653 34555554444444
No 288
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=87.04 E-value=31 Score=33.58 Aligned_cols=57 Identities=11% Similarity=-0.013 Sum_probs=51.2
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHcCCchhHHHHHHHHHh
Q 004487 551 VINSCRIHKNLEFAKKAADQLFKMEKLRDAAPYVAMSNIYAVAGQWESVSQVKKAMRE 608 (749)
Q Consensus 551 ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 608 (749)
....|...|++.+|.++.++++.++| -+...+..|.+.++..|+--.|.+-++.+.+
T Consensus 285 va~~yle~g~~neAi~l~qr~ltldp-L~e~~nk~lm~~la~~gD~is~~khyerya~ 341 (361)
T COG3947 285 VARAYLEAGKPNEAIQLHQRALTLDP-LSEQDNKGLMASLATLGDEISAIKHYERYAE 341 (361)
T ss_pred HHHHHHHcCChHHHHHHHHHHhhcCh-hhhHHHHHHHHHHHHhccchhhhhHHHHHHH
Confidence 34568899999999999999999999 9999999999999999998888888887744
No 289
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=86.85 E-value=10 Score=34.59 Aligned_cols=92 Identities=16% Similarity=0.183 Sum_probs=39.7
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH--HHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCC------hHHHH
Q 004487 446 NALISACAQNGDAQATLKSFEDMVQSGYQPDSV--SLLSVLSACSHCGLIEEGLQYFNSMTQKYKLRPK------KEHYA 517 (749)
Q Consensus 446 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~--t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~------~~~~~ 517 (749)
..+..-|.+.|+.++|++.|.++.+....|... .+..++..+...+++..+..+..+...-..-..+ ...|.
T Consensus 40 ~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk~~~ 119 (177)
T PF10602_consen 40 EDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLKVYE 119 (177)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHH
Confidence 334444444555555555555544443333332 2334444444455555544444443321100001 12222
Q ss_pred HHHHHHHHcCCHHHHHHHHHhC
Q 004487 518 SMVDILCRSGCFDEAEKLMAQM 539 (749)
Q Consensus 518 ~li~~~~~~g~~~~A~~~~~~~ 539 (749)
.+. +...+++.+|-+.|-..
T Consensus 120 gL~--~l~~r~f~~AA~~fl~~ 139 (177)
T PF10602_consen 120 GLA--NLAQRDFKEAAELFLDS 139 (177)
T ss_pred HHH--HHHhchHHHHHHHHHcc
Confidence 222 22356777776666555
No 290
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=86.08 E-value=33 Score=35.36 Aligned_cols=68 Identities=15% Similarity=0.215 Sum_probs=56.7
Q ss_pred CHHhHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCC---CchhHHHHHHHHHHcCCchhHHHHHHHHHhCCC
Q 004487 544 DEIMWSSVINSCRIHKNLEFAKKAADQLFKMEKLR---DAAPYVAMSNIYAVAGQWESVSQVKKAMRERGV 611 (749)
Q Consensus 544 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~ 611 (749)
...+|..+...++++|+++.|...+.++.+..+.. .+.....-+......|+.++|...++...+..+
T Consensus 145 ~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~ 215 (352)
T PF02259_consen 145 LAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRL 215 (352)
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHh
Confidence 46789999999999999999999999999876322 456777779999999999999999988877433
No 291
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=85.92 E-value=33 Score=32.82 Aligned_cols=243 Identities=13% Similarity=0.229 Sum_probs=144.2
Q ss_pred hcCCHHHHHHHHHhcCCC-------CcccHHHHHHHHHhCCChhHHHHHHHHHHH---CCC--CcCHHhHHHHHHHhccc
Q 004487 322 KCGRFEEAKEIFANLSHI-------STVPWTAMISAYVQKGNLEEALNLFIEMCR---ANI--SADQATFASILRASAEL 389 (749)
Q Consensus 322 ~~g~~~~A~~~~~~~~~~-------~~~~~~~li~~~~~~g~~~~A~~l~~~m~~---~g~--~p~~~t~~~ll~~~~~~ 389 (749)
+..++++|..-|+.+.+. +....-.||..+.+.+++++.+..+.+|.. +.+ .-+..+.++++...+..
T Consensus 39 ~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS 118 (440)
T KOG1464|consen 39 KEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTS 118 (440)
T ss_pred cccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhh
Confidence 345678888888876532 222345688999999999999999998864 222 23556777777776666
Q ss_pred CcHHHHHHHHHHHHHh-----CCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCC--------CC-------cchHHHHH
Q 004487 390 ASLSLGKQLHSFVIRS-----GFMSNVFSGSALLDMYAKSGSLKDAIQTFKEMPE--------RN-------IVSWNALI 449 (749)
Q Consensus 390 ~~~~~a~~~~~~~~~~-----~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--------~~-------~~~~~~li 449 (749)
.+.+.-..+++...+. +-..--.+-+-|...|...|++.+-.+++.++.+ .| ...|..=|
T Consensus 119 ~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEI 198 (440)
T KOG1464|consen 119 KNMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEI 198 (440)
T ss_pred hhhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHh
Confidence 6655555554433221 1111222334567778888888888888776641 11 23566667
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHh-----ccCCHHHHHHHHHHhHHhcCC--CCCh---HHHHHH
Q 004487 450 SACAQNGDAQATLKSFEDMVQSGYQPDSVSLLSVLSACS-----HCGLIEEGLQYFNSMTQKYKL--RPKK---EHYASM 519 (749)
Q Consensus 450 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~-----~~g~~~~a~~~~~~m~~~~~~--~p~~---~~~~~l 519 (749)
..|....+-.+-..+|++...-.-.........+++-|. +.|.+++|-.-|-+..+.|.- .|.. --|-.|
T Consensus 199 QmYT~qKnNKkLK~lYeqalhiKSAIPHPlImGvIRECGGKMHlreg~fe~AhTDFFEAFKNYDEsGspRRttCLKYLVL 278 (440)
T KOG1464|consen 199 QMYTEQKNNKKLKALYEQALHIKSAIPHPLIMGVIRECGGKMHLREGEFEKAHTDFFEAFKNYDESGSPRRTTCLKYLVL 278 (440)
T ss_pred hhhhhhcccHHHHHHHHHHHHhhccCCchHHHhHHHHcCCccccccchHHHHHhHHHHHHhcccccCCcchhHHHHHHHH
Confidence 778888888888888888765332222334445666664 568888876544444444432 2322 224556
Q ss_pred HHHHHHcCCHHHHHHHHHhC---CCC--CCHHhHHHHHHHHHhcCCHHHHHHHHHH
Q 004487 520 VDILCRSGCFDEAEKLMAQM---PFE--PDEIMWSSVINSCRIHKNLEFAKKAADQ 570 (749)
Q Consensus 520 i~~~~~~g~~~~A~~~~~~~---~~~--p~~~~~~~ll~~~~~~g~~~~a~~~~~~ 570 (749)
..++.+.|-- -|+.- |.+ |.......|+.+|.. +++.+-++++..
T Consensus 279 ANMLmkS~iN-----PFDsQEAKPyKNdPEIlAMTnlv~aYQ~-NdI~eFE~Il~~ 328 (440)
T KOG1464|consen 279 ANMLMKSGIN-----PFDSQEAKPYKNDPEILAMTNLVAAYQN-NDIIEFERILKS 328 (440)
T ss_pred HHHHHHcCCC-----CCcccccCCCCCCHHHHHHHHHHHHHhc-ccHHHHHHHHHh
Confidence 6777776621 11111 333 445666788888755 455555554443
No 292
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=85.35 E-value=70 Score=36.00 Aligned_cols=49 Identities=24% Similarity=0.245 Sum_probs=35.1
Q ss_pred cchHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHhCCCC
Q 004487 139 SVSFNALITGFAKEGLNEEAIKLFVEMQHLGFKPSDFTFAAALSAGVGLAD 189 (749)
Q Consensus 139 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~ 189 (749)
...| ++|--+.+.|++++|.++..+... ........|...+..+....+
T Consensus 112 ~p~W-a~Iyy~LR~G~~~~A~~~~~~~~~-~~~~~~~~f~~~l~~~~~s~~ 160 (613)
T PF04097_consen 112 DPIW-ALIYYCLRCGDYDEALEVANENRN-QFQKIERSFPTYLKAYASSPD 160 (613)
T ss_dssp EEHH-HHHHHHHTTT-HHHHHHHHHHTGG-GS-TTTTHHHHHHHHCTTTTS
T ss_pred CccH-HHHHHHHhcCCHHHHHHHHHHhhh-hhcchhHHHHHHHHHHHhCCC
Confidence 3456 567788999999999999855543 356667788889999877643
No 293
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=85.27 E-value=27 Score=31.24 Aligned_cols=55 Identities=13% Similarity=0.170 Sum_probs=30.4
Q ss_pred HHHHHHHhcCCHHHHHHHHHhcCCCCcccHHHHHHHHHhCCChhHHHHHHHHHHH
Q 004487 315 SLVDMYAKCGRFEEAKEIFANLSHISTVPWTAMISAYVQKGNLEEALNLFIEMCR 369 (749)
Q Consensus 315 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 369 (749)
.+++.+...|++-+|.+..+.....+.++-..++.+-.+.++..-=..+|+-..+
T Consensus 94 ~iievLL~~g~vl~ALr~ar~~~~~~~~~~~~fLeAA~~~~D~~lf~~V~~ff~~ 148 (167)
T PF07035_consen 94 EIIEVLLSKGQVLEALRYARQYHKVDSVPARKFLEAAANSNDDQLFYAVFRFFEE 148 (167)
T ss_pred HHHHHHHhCCCHHHHHHHHHHcCCcccCCHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3455566666666666666665544445555555555555555444444444433
No 294
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=84.57 E-value=1.5 Score=26.92 Aligned_cols=30 Identities=7% Similarity=0.024 Sum_probs=21.1
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHhcCCC
Q 004487 547 MWSSVINSCRIHKNLEFAKKAADQLFKMEK 576 (749)
Q Consensus 547 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~ 576 (749)
+|..+...+...|+.++|...+++.+++.|
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~ 32 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALELNP 32 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 455666667777777777777777777666
No 295
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=84.28 E-value=78 Score=35.64 Aligned_cols=86 Identities=14% Similarity=0.136 Sum_probs=42.2
Q ss_pred HHHHHhCCChhHHHHHHHHHHHCCCCcCHHhHHHHHHHhcccCcHHHHHHHHHHHHHhC-CCCchhHHHHHHHHHHh---
Q 004487 348 ISAYVQKGNLEEALNLFIEMCRANISADQATFASILRASAELASLSLGKQLHSFVIRSG-FMSNVFSGSALLDMYAK--- 423 (749)
Q Consensus 348 i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~li~~y~~--- 423 (749)
...+.-.|+++.|++.+.+ ..+...|.+.+...+..+.-+.-.+... ..+.... -.+...-+..||..|.+
T Consensus 265 f~~LlLtgqFE~AI~~L~~--~~~~~~dAVH~AIaL~~~gLL~~~~~~~---~~lls~~~~~~~~ln~arLI~~Y~~~F~ 339 (613)
T PF04097_consen 265 FQVLLLTGQFEAAIEFLYR--NEFNRVDAVHFAIALAYYGLLRVSDSSS---APLLSVDPGDPPPLNFARLIGQYTRSFE 339 (613)
T ss_dssp HHHHHHTT-HHHHHHHHHT----T-HHHHHHHHHHHHHTT---------------------------HHHHHHHHHHTTT
T ss_pred HHHHHHHhhHHHHHHHHHh--hccCcccHHHHHHHHHHcCCCCCCCccc---cceeeecCCCCCCcCHHHHHHHHHHHHh
Confidence 4556678999999998876 3445678888887777664443322221 1111111 11112445677777775
Q ss_pred cCCHHHHHHHHhhCC
Q 004487 424 SGSLKDAIQTFKEMP 438 (749)
Q Consensus 424 ~g~~~~A~~~~~~~~ 438 (749)
..+..+|.+.|--+.
T Consensus 340 ~td~~~Al~Y~~li~ 354 (613)
T PF04097_consen 340 ITDPREALQYLYLIC 354 (613)
T ss_dssp TT-HHHHHHHHHGGG
T ss_pred ccCHHHHHHHHHHHH
Confidence 356777777776554
No 296
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=84.09 E-value=55 Score=33.73 Aligned_cols=148 Identities=11% Similarity=0.054 Sum_probs=76.0
Q ss_pred CCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC---CHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCC--hH
Q 004487 440 RNIVSWNALISACAQNGDAQATLKSFEDMVQSGYQP---DSVSLLSVLSACSHCGLIEEGLQYFNSMTQKYKLRPK--KE 514 (749)
Q Consensus 440 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p---~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~--~~ 514 (749)
....+|..++..+.+.|+++.|...+.++...+..+ +......-....-..|+-.+|...++..... .+..+ ..
T Consensus 144 ~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~-~~~~~~~~~ 222 (352)
T PF02259_consen 144 ELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKC-RLSKNIDSI 222 (352)
T ss_pred HHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHH-Hhhhccccc
Confidence 445677888888888888888888888877643211 2223333344455677778888877776652 11111 11
Q ss_pred HHHHHHHHHHHcCCHHHHHHH-HHhCCCCCCHHhHHHHHHHHHh------cCCHHHHHHHHHHHhcCCCCCCchhHHHHH
Q 004487 515 HYASMVDILCRSGCFDEAEKL-MAQMPFEPDEIMWSSVINSCRI------HKNLEFAKKAADQLFKMEKLRDAAPYVAMS 587 (749)
Q Consensus 515 ~~~~li~~~~~~g~~~~A~~~-~~~~~~~p~~~~~~~ll~~~~~------~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 587 (749)
....+...+.. ..+..... ........-..++..+..-+.. .++.+++...|+++.++.| .....|..++
T Consensus 223 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~-~~~k~~~~~a 299 (352)
T PF02259_consen 223 SNAELKSGLLE--SLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDP-SWEKAWHSWA 299 (352)
T ss_pred cHHHHhhcccc--ccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhCh-hHHHHHHHHH
Confidence 11111100000 00000000 0000000001222222222333 3788999999999999999 7777777777
Q ss_pred HHHH
Q 004487 588 NIYA 591 (749)
Q Consensus 588 ~~~~ 591 (749)
..+.
T Consensus 300 ~~~~ 303 (352)
T PF02259_consen 300 LFND 303 (352)
T ss_pred HHHH
Confidence 6653
No 297
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=83.85 E-value=9.8 Score=30.06 Aligned_cols=50 Identities=10% Similarity=0.183 Sum_probs=38.0
Q ss_pred HhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCchhHHHHH
Q 004487 537 AQMPFEPDEIMWSSVINSCRIHKNLEFAKKAADQLFKMEKLRDAAPYVAMS 587 (749)
Q Consensus 537 ~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 587 (749)
-.+...|++.+..+.+.||++-+|+..|.++++.+...-. .+...|-.++
T Consensus 34 ~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~~-~~~~~y~~~l 83 (103)
T cd00923 34 FGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKCG-AHKEIYPYIL 83 (103)
T ss_pred hccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcc-CchhhHHHHH
Confidence 3346779999999999999999999999999998875443 2444555444
No 298
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=83.70 E-value=5.2 Score=39.12 Aligned_cols=61 Identities=10% Similarity=0.250 Sum_probs=47.4
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHcCCchhHHHHHHHHHh
Q 004487 547 MWSSVINSCRIHKNLEFAKKAADQLFKMEKLRDAAPYVAMSNIYAVAGQWESVSQVKKAMRE 608 (749)
Q Consensus 547 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 608 (749)
++..++..+...|+.+.+...+++++..+| -+...|..+..+|.+.|+...|...++.+.+
T Consensus 155 ~l~~lae~~~~~~~~~~~~~~l~~Li~~dp-~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~ 215 (280)
T COG3629 155 ALTKLAEALIACGRADAVIEHLERLIELDP-YDEPAYLRLMEAYLVNGRQSAAIRAYRQLKK 215 (280)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhcCc-cchHHHHHHHHHHHHcCCchHHHHHHHHHHH
Confidence 445566666777778888888888888888 7888888888888888888888888877765
No 299
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=83.67 E-value=47 Score=32.62 Aligned_cols=117 Identities=13% Similarity=0.115 Sum_probs=69.3
Q ss_pred hcccCcHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCCC-CcchHH---HHHHHHHhcCCHHHH
Q 004487 386 SAELASLSLGKQLHSFVIRSGFMSNVFSGSALLDMYAKSGSLKDAIQTFKEMPER-NIVSWN---ALISACAQNGDAQAT 461 (749)
Q Consensus 386 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~-~~~~~~---~li~~~~~~g~~~~A 461 (749)
....++...+..+++......-.. ....-.++..|...|+.+.|..++..++.. ...-|. +-|..+.+.....+.
T Consensus 144 ~~~~e~~~~a~~~~~~al~~~~~~-~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~~~ 222 (304)
T COG3118 144 LIEAEDFGEAAPLLKQALQAAPEN-SEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATPEI 222 (304)
T ss_pred hhhccchhhHHHHHHHHHHhCccc-chHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCCCH
Confidence 345566667777666666544332 344556788899999999999999998832 111222 223333333333333
Q ss_pred HHHHHHHHHCCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHhHHh
Q 004487 462 LKSFEDMVQSGYQP-DSVSLLSVLSACSHCGLIEEGLQYFNSMTQK 506 (749)
Q Consensus 462 ~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~ 506 (749)
..+-.+.-. .| |...-..+...+...|+.++|.+.+-.+.++
T Consensus 223 ~~l~~~~aa---dPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~ 265 (304)
T COG3118 223 QDLQRRLAA---DPDDVEAALALADQLHLVGRNEAALEHLLALLRR 265 (304)
T ss_pred HHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 333333332 35 4445556667788888888888776666544
No 300
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=83.10 E-value=2.5 Score=25.83 Aligned_cols=31 Identities=26% Similarity=0.435 Sum_probs=21.5
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 004487 444 SWNALISACAQNGDAQATLKSFEDMVQSGYQPD 476 (749)
Q Consensus 444 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 476 (749)
+|..+...|...|++++|+..|++.++ +.|+
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~--~~p~ 33 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALE--LDPD 33 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH--HSTT
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHH--HCcC
Confidence 566677777777788888887777776 4454
No 301
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=82.61 E-value=5.4 Score=35.13 Aligned_cols=70 Identities=14% Similarity=0.042 Sum_probs=34.4
Q ss_pred HcCCHHHHHHHHHhC-CCCCCHHhHHHHH-HHHHhcCCHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHcCC
Q 004487 525 RSGCFDEAEKLMAQM-PFEPDEIMWSSVI-NSCRIHKNLEFAKKAADQLFKMEKLRDAAPYVAMSNIYAVAGQ 595 (749)
Q Consensus 525 ~~g~~~~A~~~~~~~-~~~p~~~~~~~ll-~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 595 (749)
+.++.+++..+++.+ -..|.......+- ..+...|++.+|..+++.+.+..| ..+..-..++.++...|+
T Consensus 22 ~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~-~~p~~kALlA~CL~~~~D 93 (160)
T PF09613_consen 22 RLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAP-GFPYAKALLALCLYALGD 93 (160)
T ss_pred ccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCC-CChHHHHHHHHHHHHcCC
Confidence 455566666666555 3334322222221 224455666666666666555555 444444444444444443
No 302
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=82.27 E-value=9.5 Score=37.29 Aligned_cols=100 Identities=14% Similarity=0.195 Sum_probs=70.9
Q ss_pred hCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCC-------CCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH
Q 004487 405 SGFMSNVFSGSALLDMYAKSGSLKDAIQTFKEMPE-------RNIVSWNALISACAQNGDAQATLKSFEDMVQSGYQPDS 477 (749)
Q Consensus 405 ~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~-------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 477 (749)
.|.+.+..+...+++.-....+++++...+-++.. ++... .+.+..+. .-++++++.++..=++.|+-||.
T Consensus 58 ~g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~-~~~irlll-ky~pq~~i~~l~npIqYGiF~dq 135 (418)
T KOG4570|consen 58 RGLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTI-HTWIRLLL-KYDPQKAIYTLVNPIQYGIFPDQ 135 (418)
T ss_pred cCCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccH-HHHHHHHH-ccChHHHHHHHhCcchhccccch
Confidence 35555566666677766777788888877766652 22111 12233222 34677999998888899999999
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHhHHh
Q 004487 478 VSLLSVLSACSHCGLIEEGLQYFNSMTQK 506 (749)
Q Consensus 478 ~t~~~ll~a~~~~g~~~~a~~~~~~m~~~ 506 (749)
.|+..+++.+.+.+++.+|.++.-.|...
T Consensus 136 f~~c~l~D~flk~~n~~~aa~vvt~~~~q 164 (418)
T KOG4570|consen 136 FTFCLLMDSFLKKENYKDAASVVTEVMMQ 164 (418)
T ss_pred hhHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 99999999999999999988887766543
No 303
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=82.00 E-value=41 Score=30.78 Aligned_cols=112 Identities=12% Similarity=0.076 Sum_probs=70.1
Q ss_pred HHHHHHHHHHHCCCCCCHHHHH--HHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHH-----HHHHHHcCCHHHH
Q 004487 460 ATLKSFEDMVQSGYQPDSVSLL--SVLSACSHCGLIEEGLQYFNSMTQKYKLRPKKEHYASM-----VDILCRSGCFDEA 532 (749)
Q Consensus 460 ~A~~~~~~m~~~g~~p~~~t~~--~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l-----i~~~~~~g~~~~A 532 (749)
+.....+++....-+....++. .+..++...|++++|...++.... .|..+.+..+ .......|.+++|
T Consensus 70 ~~~~~~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~----~t~De~lk~l~~lRLArvq~q~~k~D~A 145 (207)
T COG2976 70 KSIAAAEKFVQANGKTIYAVLAALELAKAEVEANNLDKAEAQLKQALA----QTKDENLKALAALRLARVQLQQKKADAA 145 (207)
T ss_pred hhHHHHHHHHhhccccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHc----cchhHHHHHHHHHHHHHHHHHhhhHHHH
Confidence 5555556665542122222232 233457888999999988876652 2444445444 4567788999999
Q ss_pred HHHHHhCCCCCC--HHhHHHHHHHHHhcCCHHHHHHHHHHHhcCCC
Q 004487 533 EKLMAQMPFEPD--EIMWSSVINSCRIHKNLEFAKKAADQLFKMEK 576 (749)
Q Consensus 533 ~~~~~~~~~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~ 576 (749)
++.++...- ++ ...-..-...+...|+-++|...|++.++.++
T Consensus 146 L~~L~t~~~-~~w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~~ 190 (207)
T COG2976 146 LKTLDTIKE-ESWAAIVAELRGDILLAKGDKQEARAAYEKALESDA 190 (207)
T ss_pred HHHHhcccc-ccHHHHHHHHhhhHHHHcCchHHHHHHHHHHHHccC
Confidence 999987521 11 11122233567888999999999999998865
No 304
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=81.90 E-value=38 Score=30.35 Aligned_cols=53 Identities=17% Similarity=0.213 Sum_probs=27.4
Q ss_pred HHHHHHHcCCChHHHHHHHccCCCCCcchHHHHHHHHHhcCChhHHHHHHHHH
Q 004487 214 ALLDLYSKHDCVVEARKLFGEMPEVDGVSYNVMITCYAWNEQYKESLKLFREL 266 (749)
Q Consensus 214 ~Li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 266 (749)
.+++.+...|++-+|.++.......+...-..++.+-.+.++...-..+|+-.
T Consensus 94 ~iievLL~~g~vl~ALr~ar~~~~~~~~~~~~fLeAA~~~~D~~lf~~V~~ff 146 (167)
T PF07035_consen 94 EIIEVLLSKGQVLEALRYARQYHKVDSVPARKFLEAAANSNDDQLFYAVFRFF 146 (167)
T ss_pred HHHHHHHhCCCHHHHHHHHHHcCCcccCCHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 34455555666666666665544444444455555555555544444444333
No 305
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=81.54 E-value=22 Score=28.31 Aligned_cols=62 Identities=19% Similarity=0.288 Sum_probs=45.6
Q ss_pred HHHHHhcCCHHHHHHHHhhCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 004487 418 LDMYAKSGSLKDAIQTFKEMPERNIVSWNALISACAQNGDAQATLKSFEDMVQSGYQPDSVSLLS 482 (749)
Q Consensus 418 i~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ 482 (749)
+..+...|++++|..+.+.+.-||...|-+|-. .+.|..+++..-+.+|..+| .|...+|..
T Consensus 46 lsSLmNrG~Yq~Al~l~~~~~~pdlepw~ALce--~rlGl~s~l~~rl~rla~sg-~p~lq~Faa 107 (115)
T TIGR02508 46 LSSLMNRGDYQSALQLGNKLCYPDLEPWLALCE--WRLGLGSALESRLNRLAASG-DPRLQTFVA 107 (115)
T ss_pred HHHHHccchHHHHHHhcCCCCCchHHHHHHHHH--HhhccHHHHHHHHHHHHhCC-CHHHHHHHH
Confidence 345667899999999999888899999877754 46677777777777787776 455555543
No 306
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=81.47 E-value=2.9 Score=41.08 Aligned_cols=111 Identities=13% Similarity=0.120 Sum_probs=77.4
Q ss_pred HHHhccCCHHHHHHHHHHhHHhcCCCC-ChHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHhHHHHHHHHHhcCCH
Q 004487 485 SACSHCGLIEEGLQYFNSMTQKYKLRP-KKEHYASMVDILCRSGCFDEAEKLMAQM-PFEP-DEIMWSSVINSCRIHKNL 561 (749)
Q Consensus 485 ~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~ 561 (749)
+-|.+.|.+++|+..+..-. .+.| ++..+..-..+|.+..++..|+.-.+.. .+.. -.-.|.--+.+-...|+.
T Consensus 105 N~yFKQgKy~EAIDCYs~~i---a~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg~~ 181 (536)
T KOG4648|consen 105 NTYFKQGKYEEAIDCYSTAI---AVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLGNN 181 (536)
T ss_pred hhhhhccchhHHHHHhhhhh---ccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHhhH
Confidence 46999999999999998766 4566 7778888888999999998887766554 1110 123444444444567889
Q ss_pred HHHHHHHHHHhcCCCCCCchhHHHHHHHHHHcCCchhHHHHH
Q 004487 562 EFAKKAADQLFKMEKLRDAAPYVAMSNIYAVAGQWESVSQVK 603 (749)
Q Consensus 562 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 603 (749)
++|.+-++.+++++| .+. -|-..|++.....++.-+.
T Consensus 182 ~EAKkD~E~vL~LEP-~~~----ELkK~~a~i~Sl~E~~I~~ 218 (536)
T KOG4648|consen 182 MEAKKDCETVLALEP-KNI----ELKKSLARINSLRERKIAT 218 (536)
T ss_pred HHHHHhHHHHHhhCc-ccH----HHHHHHHHhcchHhhhHHh
Confidence 999999999999999 432 3445565655555554443
No 307
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=81.04 E-value=22 Score=32.43 Aligned_cols=94 Identities=19% Similarity=0.133 Sum_probs=66.4
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHhhCCCCC------cchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC---HHHHHH
Q 004487 412 FSGSALLDMYAKSGSLKDAIQTFKEMPERN------IVSWNALISACAQNGDAQATLKSFEDMVQSGYQPD---SVSLLS 482 (749)
Q Consensus 412 ~~~~~li~~y~~~g~~~~A~~~~~~~~~~~------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~---~~t~~~ 482 (749)
..+..+.+.|.+.|+.+.|.+.|.++.+.. +..+-.+|......+++..+.....+....--.+. ...-..
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk 116 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLK 116 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHH
Confidence 456778999999999999999999988543 34566788888889999999888877665322222 222222
Q ss_pred HHH--HHhccCCHHHHHHHHHHhHH
Q 004487 483 VLS--ACSHCGLIEEGLQYFNSMTQ 505 (749)
Q Consensus 483 ll~--a~~~~g~~~~a~~~~~~m~~ 505 (749)
+.. ++...+++.+|-+.|-....
T Consensus 117 ~~~gL~~l~~r~f~~AA~~fl~~~~ 141 (177)
T PF10602_consen 117 VYEGLANLAQRDFKEAAELFLDSLS 141 (177)
T ss_pred HHHHHHHHHhchHHHHHHHHHccCc
Confidence 222 24567899999988866553
No 308
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=79.40 E-value=99 Score=33.57 Aligned_cols=129 Identities=9% Similarity=0.040 Sum_probs=87.9
Q ss_pred CcchHHHHHHHHHcCCChhHHHHHHHHhHhcCCCCCCcch-HHHHHHhcCCCCChHHHHHHHHHHHHhCCCCchhHHHHH
Q 004487 36 TAVSWTILIGGYSQKNQFREAFKLFVDMRTDGGSDPDYVT-FATLLSGCSEPDTANELIQVHADIIKFGYNSILIICNSL 114 (749)
Q Consensus 36 ~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~g~~p~~~~-~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l 114 (749)
+...|+.+|.---.....+.+...+..+... -|-.+- |-....-=.+.|..+.+..+|+.-+. |++..+..|...
T Consensus 44 ~f~~wt~li~~~~~~~~~~~~r~~y~~fL~k---yPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~-aip~SvdlW~~Y 119 (577)
T KOG1258|consen 44 DFDAWTTLIQENDSIEDVDALREVYDIFLSK---YPLCYGYWKKFADYEYKLGNAENSVKVFERGVQ-AIPLSVDLWLSY 119 (577)
T ss_pred cccchHHHHhccCchhHHHHHHHHHHHHHhh---CccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH-hhhhHHHHHHHH
Confidence 4556888886655555566677777777644 344332 22222333466778888888887765 455677778777
Q ss_pred HHHhHc-CCChhHHHHHHccCCC------CCcchHHHHHHHHHhCCChhHHHHHHHHHHHC
Q 004487 115 VDSYCK-IRCLDLARRVFKEMPQ------KDSVSFNALITGFAKEGLNEEAIKLFVEMQHL 168 (749)
Q Consensus 115 i~~~~~-~g~~~~A~~~~~~m~~------~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 168 (749)
+..... .|+.+..++.|+.... .....|...|.--..++++.....+|++.++.
T Consensus 120 ~~f~~n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRilei 180 (577)
T KOG1258|consen 120 LAFLKNNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEI 180 (577)
T ss_pred HHHHhccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhh
Confidence 766544 4777888888876553 24446888888888889999999999998874
No 309
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=79.32 E-value=22 Score=30.89 Aligned_cols=78 Identities=9% Similarity=0.188 Sum_probs=54.3
Q ss_pred HHHHHHHHhHcCCChhHHHHHHccCCC---------CCcchHHHHHHHHHhCCC-hhHHHHHHHHHHHCCCCCChhhHHH
Q 004487 110 ICNSLVDSYCKIRCLDLARRVFKEMPQ---------KDSVSFNALITGFAKEGL-NEEAIKLFVEMQHLGFKPSDFTFAA 179 (749)
Q Consensus 110 ~~~~li~~~~~~g~~~~A~~~~~~m~~---------~~~~~~~~li~~~~~~g~-~~~A~~l~~~m~~~g~~p~~~t~~~ 179 (749)
..|.++.-.+..+++....++++.+.. .+-.+|++++.+.++..- ---+..+|.-|.+.+.+++..-|..
T Consensus 41 fiN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~ 120 (145)
T PF13762_consen 41 FINCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSC 120 (145)
T ss_pred HHHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHH
Confidence 355666655666666666666655532 355678888888866655 3456778888888788888888888
Q ss_pred HHHHHhCC
Q 004487 180 ALSAGVGL 187 (749)
Q Consensus 180 ll~a~~~~ 187 (749)
++++|.+.
T Consensus 121 li~~~l~g 128 (145)
T PF13762_consen 121 LIKAALRG 128 (145)
T ss_pred HHHHHHcC
Confidence 88887764
No 310
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=79.09 E-value=4.2 Score=24.70 Aligned_cols=27 Identities=26% Similarity=0.442 Sum_probs=17.6
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004487 444 SWNALISACAQNGDAQATLKSFEDMVQ 470 (749)
Q Consensus 444 ~~~~li~~~~~~g~~~~A~~~~~~m~~ 470 (749)
.|..+...+.+.|++++|++.|++..+
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 355566667777777777777777666
No 311
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=78.77 E-value=1.2e+02 Score=34.13 Aligned_cols=48 Identities=13% Similarity=0.131 Sum_probs=29.9
Q ss_pred HHHHHHHHhHcCCChhHHHHHHccCCCCCcchHHHHHHHHHhCCChhH
Q 004487 110 ICNSLVDSYCKIRCLDLARRVFKEMPQKDSVSFNALITGFAKEGLNEE 157 (749)
Q Consensus 110 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~ 157 (749)
++..+|..+.-.|++++|-.+.-.|-..+..-|..-+.-+...++...
T Consensus 394 v~~~yI~HLl~~~~y~~Aas~~p~m~gn~~~eWe~~V~~f~e~~~l~~ 441 (846)
T KOG2066|consen 394 VGKTYIDHLLFEGKYDEAASLCPKMLGNNAAEWELWVFKFAELDQLTD 441 (846)
T ss_pred HHHHHHHHHHhcchHHHHHhhhHHHhcchHHHHHHHHHHhccccccch
Confidence 445556666666667777666666666666666666666666555443
No 312
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=78.72 E-value=3.6 Score=26.48 Aligned_cols=28 Identities=18% Similarity=0.361 Sum_probs=22.5
Q ss_pred hhHHHHHHHHHHcCCchhHHHHHHHHHh
Q 004487 581 APYVAMSNIYAVAGQWESVSQVKKAMRE 608 (749)
Q Consensus 581 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 608 (749)
.++..|+..|...|++++|..++++..+
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 4678889999999999999998888754
No 313
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=78.19 E-value=12 Score=34.30 Aligned_cols=76 Identities=13% Similarity=0.150 Sum_probs=54.5
Q ss_pred HHcCCHHHHHHHHHhCCCCC--CHHhHHHHHHHHHhcCCHHHHHHHHHHHhcCCCC---CCchhHHHHHHHHHHcCCchh
Q 004487 524 CRSGCFDEAEKLMAQMPFEP--DEIMWSSVINSCRIHKNLEFAKKAADQLFKMEKL---RDAAPYVAMSNIYAVAGQWES 598 (749)
Q Consensus 524 ~~~g~~~~A~~~~~~~~~~p--~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~ 598 (749)
.|.|+ ++|.+.|-++.-.| +.......+..|....|.++++.++.+++++... .|+..+..|+.+|.+.|+++.
T Consensus 118 sr~~d-~~A~~~fL~~E~~~~l~t~elq~aLAtyY~krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~ 196 (203)
T PF11207_consen 118 SRFGD-QEALRRFLQLEGTPELETAELQYALATYYTKRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQ 196 (203)
T ss_pred hccCc-HHHHHHHHHHcCCCCCCCHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhh
Confidence 45555 56777777763222 3344455566666678899999999999886542 468889999999999999888
Q ss_pred HH
Q 004487 599 VS 600 (749)
Q Consensus 599 a~ 600 (749)
|-
T Consensus 197 AY 198 (203)
T PF11207_consen 197 AY 198 (203)
T ss_pred hh
Confidence 74
No 314
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=78.12 E-value=11 Score=32.63 Aligned_cols=51 Identities=8% Similarity=0.046 Sum_probs=25.7
Q ss_pred cCCHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHcCCchhHHHHHHHHHhC
Q 004487 558 HKNLEFAKKAADQLFKMEKLRDAAPYVAMSNIYAVAGQWESVSQVKKAMRER 609 (749)
Q Consensus 558 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 609 (749)
.++.++++.++..+.-+.| .....-..-+.++...|+|++|.++++...+.
T Consensus 23 ~~d~~D~e~lLdALrvLrP-~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~ 73 (153)
T TIGR02561 23 SADPYDAQAMLDALRVLRP-NLKELDMFDGWLLIARGNYDEAARILRELLSS 73 (153)
T ss_pred cCCHHHHHHHHHHHHHhCC-CccccchhHHHHHHHcCCHHHHHHHHHhhhcc
Confidence 4445555555555555555 44444444455555555555555555544433
No 315
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=77.70 E-value=12 Score=30.03 Aligned_cols=51 Identities=10% Similarity=0.205 Sum_probs=35.4
Q ss_pred HHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCchhHHHHH
Q 004487 536 MAQMPFEPDEIMWSSVINSCRIHKNLEFAKKAADQLFKMEKLRDAAPYVAMS 587 (749)
Q Consensus 536 ~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 587 (749)
+-.+-..|++.+..+.+.||++.+|+..|.++++.+...-. +....|-.++
T Consensus 36 l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~-~~~~~Y~~~l 86 (108)
T PF02284_consen 36 LFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCG-NKKEIYPYIL 86 (108)
T ss_dssp HTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTT-T-TTHHHHHH
T ss_pred HhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcc-ChHHHHHHHH
Confidence 33346679999999999999999999999999999876554 3333665554
No 316
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=77.60 E-value=50 Score=36.59 Aligned_cols=182 Identities=16% Similarity=0.258 Sum_probs=104.1
Q ss_pred HHHHHHHHHhCCChhHHHHHHHHHHHCCCCcCHH----------hHHHHHHHhcccCcHHHHHHHHHHHHHh-C-CCCch
Q 004487 344 WTAMISAYVQKGNLEEALNLFIEMCRANISADQA----------TFASILRASAELASLSLGKQLHSFVIRS-G-FMSNV 411 (749)
Q Consensus 344 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~----------t~~~ll~~~~~~~~~~~a~~~~~~~~~~-~-~~~~~ 411 (749)
...++-.|-...+++..+++.+.+..- ||.. .|...++--.+.|+-+.|....--+++. | +.|
T Consensus 204 V~nlmlSyRDvQdY~amirLVe~Lk~i---P~t~~vve~~nv~f~YaFALNRRNr~GDRakAL~~~l~lve~eg~vap-- 278 (1226)
T KOG4279|consen 204 VSNLMLSYRDVQDYDAMIRLVEDLKRI---PDTLKVVETHNVRFHYAFALNRRNRPGDRAKALNTVLPLVEKEGPVAP-- 278 (1226)
T ss_pred HHHHHhhhccccchHHHHHHHHHHHhC---cchhhhhccCceEEEeeehhcccCCCccHHHHHHHHHHHHHhcCCCCC--
Confidence 445566677777788888887777652 3322 2333333334556666666655444433 2 233
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHhhCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH---HHHHHHHHh
Q 004487 412 FSGSALLDMYAKSGSLKDAIQTFKEMPERNIVSWNALISACAQNGDAQATLKSFEDMVQSGYQPDSVS---LLSVLSACS 488 (749)
Q Consensus 412 ~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t---~~~ll~a~~ 488 (749)
++|+-||++- +.|- +-+.|...+..+.|.+.|++.-+ +.|+..+ +..|+.+-.
T Consensus 279 -------Dm~Cl~GRIY------KDmF---------~~S~ytDa~s~~~a~~WyrkaFe--veP~~~sGIN~atLL~aaG 334 (1226)
T KOG4279|consen 279 -------DMYCLCGRIY------KDMF---------IASNYTDAESLNHAIEWYRKAFE--VEPLEYSGINLATLLRAAG 334 (1226)
T ss_pred -------ceeeeechhh------hhhh---------hccCCcchhhHHHHHHHHHHHhc--cCchhhccccHHHHHHHhh
Confidence 3455566532 2221 12334555667788888988877 7777643 444444322
Q ss_pred ccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHH
Q 004487 489 HCGLIEEGLQYFNSMTQKYKLRPKKEHYASMVDILCRSGCFDEAEKLMAQMPFEPDEIMWSSVINSCRIHKNLEFAKKAA 568 (749)
Q Consensus 489 ~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~ 568 (749)
+. ++...++ .. .--.|-.+++|.|.+++-.++++-. ..+.+..-.+|+.+|.++.
T Consensus 335 ~~--Fens~El----q~---------IgmkLn~LlgrKG~leklq~YWdV~----------~y~~asVLAnd~~kaiqAa 389 (1226)
T KOG4279|consen 335 EH--FENSLEL----QQ---------IGMKLNSLLGRKGALEKLQEYWDVA----------TYFEASVLANDYQKAIQAA 389 (1226)
T ss_pred hh--ccchHHH----HH---------HHHHHHHHhhccchHHHHHHHHhHH----------HhhhhhhhccCHHHHHHHH
Confidence 11 1111111 10 1123445678999988877777532 2345556678999999999
Q ss_pred HHHhcCCCCCCc
Q 004487 569 DQLFKMEKLRDA 580 (749)
Q Consensus 569 ~~~~~~~~~~~~ 580 (749)
+.|+++.| +.-
T Consensus 390 e~mfKLk~-P~W 400 (1226)
T KOG4279|consen 390 EMMFKLKP-PVW 400 (1226)
T ss_pred HHHhccCC-cee
Confidence 99999988 543
No 317
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=77.47 E-value=18 Score=29.00 Aligned_cols=60 Identities=15% Similarity=0.303 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHH
Q 004487 460 ATLKSFEDMVQSGYQPDSVSLLSVLSACSHCGLIEEGLQYFNSMTQKYKLRPKKEHYASMVD 521 (749)
Q Consensus 460 ~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~ 521 (749)
+..+-++.+....+.|+.....+.|.||.+.+++..|.++|+.++.+-+ +....|..+++
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~--~~~~~Y~~~lq 87 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCG--NKKEIYPYILQ 87 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTT--T-TTHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcc--ChHHHHHHHHH
Confidence 4555666666777899999999999999999999999999998887644 33447777664
No 318
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=76.96 E-value=21 Score=28.28 Aligned_cols=63 Identities=14% Similarity=0.302 Sum_probs=47.4
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHH
Q 004487 457 DAQATLKSFEDMVQSGYQPDSVSLLSVLSACSHCGLIEEGLQYFNSMTQKYKLRPKKEHYASMVD 521 (749)
Q Consensus 457 ~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~ 521 (749)
+.-++.+-++.+....+.|+.....+.|.||-+.+++.-|.++|+..+.+-+ .+...|..+++
T Consensus 22 D~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~~--~~~~~y~~~lq 84 (103)
T cd00923 22 DGWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKCG--AHKEIYPYILQ 84 (103)
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcc--CchhhHHHHHH
Confidence 3445666667777777899999999999999999999999999988775533 34556766654
No 319
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=76.90 E-value=35 Score=27.25 Aligned_cols=87 Identities=15% Similarity=0.015 Sum_probs=57.7
Q ss_pred ChHHHHHHHHHHHHhCCCCchhHHHHHHHHhHcCCChhHHHHHHccCCCCCcchHHHHHHHHHhCCChhHHHHHHHHHHH
Q 004487 88 TANELIQVHADIIKFGYNSILIICNSLVDSYCKIRCLDLARRVFKEMPQKDSVSFNALITGFAKEGLNEEAIKLFVEMQH 167 (749)
Q Consensus 88 ~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 167 (749)
..++|..|-+.+...+-. ...+--.-+..+...|++++|..+.+.+.-||...|-+|-. .+.|..+++..-+.+|..
T Consensus 20 cHqEA~tIAdwL~~~~~~-~E~v~lIRlsSLmNrG~Yq~Al~l~~~~~~pdlepw~ALce--~rlGl~s~l~~rl~rla~ 96 (115)
T TIGR02508 20 CHQEANTIADWLHLKGES-EEAVQLIRLSSLMNRGDYQSALQLGNKLCYPDLEPWLALCE--WRLGLGSALESRLNRLAA 96 (115)
T ss_pred HHHHHHHHHHHHhcCCch-HHHHHHHHHHHHHccchHHHHHHhcCCCCCchHHHHHHHHH--HhhccHHHHHHHHHHHHh
Confidence 345666666666555422 22222233445667899999999999999999999988765 456777777777777776
Q ss_pred CCCCCChhhHH
Q 004487 168 LGFKPSDFTFA 178 (749)
Q Consensus 168 ~g~~p~~~t~~ 178 (749)
.| .|...+|.
T Consensus 97 sg-~p~lq~Fa 106 (115)
T TIGR02508 97 SG-DPRLQTFV 106 (115)
T ss_pred CC-CHHHHHHH
Confidence 65 44444443
No 320
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=76.74 E-value=21 Score=38.29 Aligned_cols=99 Identities=14% Similarity=0.022 Sum_probs=57.9
Q ss_pred HcCCChHHHHHHHccCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCcchHHHHHHHHHccCChHHHHHHHH
Q 004487 220 SKHDCVVEARKLFGEMPEVDGVSYNVMITCYAWNEQYKESLKLFRELQFTRFDRSQFPFSTLLSVVANKLDLQIGRQIHT 299 (749)
Q Consensus 220 ~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~ 299 (749)
.+.|+++.|.++..+. .+..-|..|..+..+.|++..|.+.|...+. |..++-.+...|+.+....+-.
T Consensus 648 l~lgrl~iA~~la~e~--~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~~la~ 716 (794)
T KOG0276|consen 648 LKLGRLDIAFDLAVEA--NSEVKWRQLGDAALSAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGLAVLAS 716 (794)
T ss_pred hhcCcHHHHHHHHHhh--cchHHHHHHHHHHhhcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHHHHHH
Confidence 3556666666654333 3455677777777777777777777766543 4556666666666555444444
Q ss_pred HHHHhcCCcchhHHHHHHHHHHhcCCHHHHHHHHHh
Q 004487 300 QTIVTTAISEVKVANSLVDMYAKCGRFEEAKEIFAN 335 (749)
Q Consensus 300 ~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 335 (749)
...+.|.. |...-+|...|+++++.+++.+
T Consensus 717 ~~~~~g~~------N~AF~~~~l~g~~~~C~~lLi~ 746 (794)
T KOG0276|consen 717 LAKKQGKN------NLAFLAYFLSGDYEECLELLIS 746 (794)
T ss_pred HHHhhccc------chHHHHHHHcCCHHHHHHHHHh
Confidence 44444421 2233345566666666666544
No 321
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=76.55 E-value=14 Score=38.31 Aligned_cols=118 Identities=18% Similarity=0.193 Sum_probs=58.9
Q ss_pred cCCHHHHH-HHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHHcCCHHHHH
Q 004487 455 NGDAQATL-KSFEDMVQSGYQPDSVSLLSVLSACSHCGLIEEGLQYFNSMTQKYKLRPKKEHYASMVDILCRSGCFDEAE 533 (749)
Q Consensus 455 ~g~~~~A~-~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~ 533 (749)
.|+...|- +++..+....-.|+.+...+.+ ..+.|.++.+.+.+..... -+.....+..+++......|++++|.
T Consensus 302 ~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i--~~~lg~ye~~~~~~s~~~~--~~~s~~~~~~~~~r~~~~l~r~~~a~ 377 (831)
T PRK15180 302 DGDIIAASQQLFAALRNQQQDPVLIQLRSVI--FSHLGYYEQAYQDISDVEK--IIGTTDSTLRCRLRSLHGLARWREAL 377 (831)
T ss_pred ccCHHHHHHHHHHHHHhCCCCchhhHHHHHH--HHHhhhHHHHHHHhhchhh--hhcCCchHHHHHHHhhhchhhHHHHH
Confidence 34444433 3333344333344444333332 4566666666666554432 23334455556666666666666666
Q ss_pred HHHHhC-CCC-CCHHhHHHHHHHHHhcCCHHHHHHHHHHHhcCCC
Q 004487 534 KLMAQM-PFE-PDEIMWSSVINSCRIHKNLEFAKKAADQLFKMEK 576 (749)
Q Consensus 534 ~~~~~~-~~~-p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~ 576 (749)
..-+.| +-+ -++.+.......-.+.|-++++.-.+++++.+.|
T Consensus 378 s~a~~~l~~eie~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~ 422 (831)
T PRK15180 378 STAEMMLSNEIEDEEVLTVAAGSADALQLFDKSYHYWKRVLLLNP 422 (831)
T ss_pred HHHHHHhccccCChhheeeecccHHHHhHHHHHHHHHHHHhccCC
Confidence 666555 111 1233333333334455566666666666666665
No 322
>PRK10941 hypothetical protein; Provisional
Probab=75.90 E-value=19 Score=35.34 Aligned_cols=62 Identities=16% Similarity=0.148 Sum_probs=55.5
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHcCCchhHHHHHHHHHhC
Q 004487 547 MWSSVINSCRIHKNLEFAKKAADQLFKMEKLRDAAPYVAMSNIYAVAGQWESVSQVKKAMRER 609 (749)
Q Consensus 547 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 609 (749)
..+.|-.++.+.++++.|..+.+.++.+.| .++.-+.--+-+|.+.|.+..|..=++...+.
T Consensus 183 ml~nLK~~~~~~~~~~~AL~~~e~ll~l~P-~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~ 244 (269)
T PRK10941 183 LLDTLKAALMEEKQMELALRASEALLQFDP-EDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQ 244 (269)
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHh
Confidence 345677789999999999999999999999 99999999999999999999999988887654
No 323
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=75.88 E-value=3.7 Score=23.45 Aligned_cols=23 Identities=9% Similarity=0.211 Sum_probs=16.2
Q ss_pred hHHHHHHHHHHcCCchhHHHHHH
Q 004487 582 PYVAMSNIYAVAGQWESVSQVKK 604 (749)
Q Consensus 582 ~~~~l~~~~~~~g~~~~a~~~~~ 604 (749)
....|+..+...|++++|..+++
T Consensus 3 a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 3 ARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHh
Confidence 45567777777777777777654
No 324
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=75.87 E-value=33 Score=33.56 Aligned_cols=106 Identities=12% Similarity=0.115 Sum_probs=51.9
Q ss_pred CHHHHHHHHHHHHH-CCCCCCHHHHHHHHHHHhc-cC-CHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHHcCCHHHHH
Q 004487 457 DAQATLKSFEDMVQ-SGYQPDSVSLLSVLSACSH-CG-LIEEGLQYFNSMTQKYKLRPKKEHYASMVDILCRSGCFDEAE 533 (749)
Q Consensus 457 ~~~~A~~~~~~m~~-~g~~p~~~t~~~ll~a~~~-~g-~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~ 533 (749)
...+|+++|+.... ..+--|......+++.... .+ ....-.++.+-+...++-.++..+..++++.++..+++.+-.
T Consensus 143 ~Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~kl~ 222 (292)
T PF13929_consen 143 IVVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWNKLF 222 (292)
T ss_pred HHHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHHHHH
Confidence 34556666652211 1233445555555544333 11 222223333344444455566666666666666666666666
Q ss_pred HHHHhC--C--CCCCHHhHHHHHHHHHhcCCHH
Q 004487 534 KLMAQM--P--FEPDEIMWSSVINSCRIHKNLE 562 (749)
Q Consensus 534 ~~~~~~--~--~~p~~~~~~~ll~~~~~~g~~~ 562 (749)
++++.. . ...|...|..+|..-..+||..
T Consensus 223 ~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~ 255 (292)
T PF13929_consen 223 QFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQE 255 (292)
T ss_pred HHHHHhcccCCCCCCCchHHHHHHHHHHcCCHH
Confidence 666554 1 1224455555555555555543
No 325
>PRK11619 lytic murein transglycosylase; Provisional
Probab=75.43 E-value=1.5e+02 Score=33.56 Aligned_cols=115 Identities=13% Similarity=0.107 Sum_probs=62.9
Q ss_pred cCCHHHHHHHHHHHHHCC-CCCCHH--HHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHHcCCHHH
Q 004487 455 NGDAQATLKSFEDMVQSG-YQPDSV--SLLSVLSACSHCGLIEEGLQYFNSMTQKYKLRPKKEHYASMVDILCRSGCFDE 531 (749)
Q Consensus 455 ~g~~~~A~~~~~~m~~~g-~~p~~~--t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~ 531 (749)
..+.+.|..++....... +.+... ....+.......+..+++...++..... ..+......-+..-.+.++++.
T Consensus 254 r~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~---~~~~~~~e~r~r~Al~~~dw~~ 330 (644)
T PRK11619 254 RQDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMR---SQSTSLLERRVRMALGTGDRRG 330 (644)
T ss_pred HhCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhcccc---cCCcHHHHHHHHHHHHccCHHH
Confidence 345677888887764432 333322 2223322222322255666666543321 2244445555555568888888
Q ss_pred HHHHHHhCCCC-CCHHhHHH-HHHHHHhcCCHHHHHHHHHHHh
Q 004487 532 AEKLMAQMPFE-PDEIMWSS-VINSCRIHKNLEFAKKAADQLF 572 (749)
Q Consensus 532 A~~~~~~~~~~-p~~~~~~~-ll~~~~~~g~~~~a~~~~~~~~ 572 (749)
+...|..|+.. .+...|.- +..+....|+.++|...|+++.
T Consensus 331 ~~~~i~~L~~~~~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a 373 (644)
T PRK11619 331 LNTWLARLPMEAKEKDEWRYWQADLLLEQGRKAEAEEILRQLM 373 (644)
T ss_pred HHHHHHhcCHhhccCHhhHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 88888887321 12233333 3345455788888888888874
No 326
>KOG1498 consensus 26S proteasome regulatory complex, subunit RPN5/PSMD12 [Posttranslational modification, protein turnover, chaperones]
Probab=75.33 E-value=1e+02 Score=31.58 Aligned_cols=110 Identities=17% Similarity=0.243 Sum_probs=78.9
Q ss_pred HHHHHHHHcCCHHHHHHHHHhCCCCCCHHhHHHH------------HHHHHhcCCHHHHHHHHHHHhcCCCC-CC-----
Q 004487 518 SMVDILCRSGCFDEAEKLMAQMPFEPDEIMWSSV------------INSCRIHKNLEFAKKAADQLFKMEKL-RD----- 579 (749)
Q Consensus 518 ~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l------------l~~~~~~g~~~~a~~~~~~~~~~~~~-~~----- 579 (749)
.|...+-.+|++++|.+++.+.+++ ||+++ +.-|...+|+-.|.-+-+++...-.. ++
T Consensus 136 ~L~~ike~~Gdi~~Aa~il~el~VE----Tygsm~~~ekV~fiLEQmrKOG~~~D~vra~i~skKI~~K~F~~~~~~~lK 211 (439)
T KOG1498|consen 136 MLAKIKEEQGDIAEAADILCELQVE----TYGSMEKSEKVAFILEQMRLCLLRLDYVRAQIISKKINKKFFEKPDVQELK 211 (439)
T ss_pred HHHHHHHHcCCHHHHHHHHHhcchh----hhhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhHHhcCCccHHHHH
Confidence 4566788899999999999988543 34333 45688889999988887777553320 12
Q ss_pred chhHHHHHHHHHHcCCchhHHHHHHHHHhCCCccCCceeEEEeCCEEEEEEe
Q 004487 580 AAPYVAMSNIYAVAGQWESVSQVKKAMRERGVRKVTAYSWVELKSKVHVFTA 631 (749)
Q Consensus 580 ~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~s~~~~~~~~~~f~~ 631 (749)
...|..++.+....+.+=++.+.++..-+.|-.+...--|+++-..+-.|..
T Consensus 212 lkyY~lmI~l~lh~~~Yl~v~~~Yraiy~t~~vk~d~~kw~~vL~~iv~f~~ 263 (439)
T KOG1498|consen 212 LKYYELMIRLGLHDRAYLNVCRSYRAIYDTGNVKEDPEKWIEVLRSIVSFCV 263 (439)
T ss_pred HHHHHHHHHhcccccchhhHHHHHHHHhcccccccChhhhhhhhhhheeEEe
Confidence 3458899999999999999999999998877666544457765544444443
No 327
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=74.97 E-value=6.2 Score=24.00 Aligned_cols=28 Identities=21% Similarity=0.382 Sum_probs=25.1
Q ss_pred hhHHHHHHHHHHcCCchhHHHHHHHHHh
Q 004487 581 APYVAMSNIYAVAGQWESVSQVKKAMRE 608 (749)
Q Consensus 581 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 608 (749)
.+|..++.+|...|++++|.+.+++..+
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~ 29 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 4688999999999999999999998765
No 328
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=74.96 E-value=2.5 Score=37.02 Aligned_cols=84 Identities=19% Similarity=0.125 Sum_probs=55.6
Q ss_pred HHHHHhCCCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHcCCChHHHHHHHccCCCCCcchHHHHHHHHHhcCChhHH
Q 004487 180 ALSAGVGLADIALGRQVHAFVVKTNFVENVFVANALLDLYSKHDCVVEARKLFGEMPEVDGVSYNVMITCYAWNEQYKES 259 (749)
Q Consensus 180 ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A 259 (749)
++..+.+.+.+......++.+.+.+...+....+.|+..|++.++.++..++++.... .-...++..+.+.|.+++|
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~~---yd~~~~~~~c~~~~l~~~a 89 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTSNN---YDLDKALRLCEKHGLYEEA 89 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSSS---S-CTHHHHHHHTTTSHHHH
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccccc---cCHHHHHHHHHhcchHHHH
Confidence 3444555555666666666666666566777888899999998888888888874433 3345566667777777777
Q ss_pred HHHHHHH
Q 004487 260 LKLFREL 266 (749)
Q Consensus 260 ~~~~~~m 266 (749)
.-++.++
T Consensus 90 ~~Ly~~~ 96 (143)
T PF00637_consen 90 VYLYSKL 96 (143)
T ss_dssp HHHHHCC
T ss_pred HHHHHHc
Confidence 7777665
No 329
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=74.62 E-value=26 Score=30.48 Aligned_cols=65 Identities=14% Similarity=0.251 Sum_probs=37.7
Q ss_pred HhccCCHHHHHHHHHHhHHhcCCCCCh---HHHHHHHHHHHHcCCHHHHHHHHHhCCCCC-CHHhHHHHHHHHH
Q 004487 487 CSHCGLIEEGLQYFNSMTQKYKLRPKK---EHYASMVDILCRSGCFDEAEKLMAQMPFEP-DEIMWSSVINSCR 556 (749)
Q Consensus 487 ~~~~g~~~~a~~~~~~m~~~~~~~p~~---~~~~~li~~~~~~g~~~~A~~~~~~~~~~p-~~~~~~~ll~~~~ 556 (749)
-...++.+++..+++.|. -+.|+. .++. +-.+.+.|++++|..+|++..-.+ ....-..|+.-|.
T Consensus 20 aL~~~d~~D~e~lLdALr---vLrP~~~e~d~~d--g~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL 88 (153)
T TIGR02561 20 ALRSADPYDAQAMLDALR---VLRPNLKELDMFD--GWLLIARGNYDEAARILRELLSSAGAPPYGKALLALCL 88 (153)
T ss_pred HHhcCCHHHHHHHHHHHH---HhCCCccccchhH--HHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHH
Confidence 344677888888887776 345543 3333 334567788888888888773332 3222334444443
No 330
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=73.40 E-value=34 Score=36.85 Aligned_cols=100 Identities=20% Similarity=0.219 Sum_probs=56.1
Q ss_pred HHhcCCHHHHHHHHHhcCCCCcccHHHHHHHHHhCCChhHHHHHHHHHHHCCCCcCHHhHHHHHHHhcccCcHHHHHHHH
Q 004487 320 YAKCGRFEEAKEIFANLSHISTVPWTAMISAYVQKGNLEEALNLFIEMCRANISADQATFASILRASAELASLSLGKQLH 399 (749)
Q Consensus 320 ~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~ 399 (749)
..+.|+++.|.++..+. .+..-|..|-.+..+.+++..|.+.|..... |..|+-.+...|+.+....+-
T Consensus 647 al~lgrl~iA~~la~e~--~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~~la 715 (794)
T KOG0276|consen 647 ALKLGRLDIAFDLAVEA--NSEVKWRQLGDAALSAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGLAVLA 715 (794)
T ss_pred hhhcCcHHHHHHHHHhh--cchHHHHHHHHHHhhcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHHHHH
Confidence 35667777777665442 2444588888888888888888777766543 344555555555554444444
Q ss_pred HHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhh
Q 004487 400 SFVIRSGFMSNVFSGSALLDMYAKSGSLKDAIQTFKE 436 (749)
Q Consensus 400 ~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~ 436 (749)
....+.|.. |.-..+|...|+++++.+++.+
T Consensus 716 ~~~~~~g~~------N~AF~~~~l~g~~~~C~~lLi~ 746 (794)
T KOG0276|consen 716 SLAKKQGKN------NLAFLAYFLSGDYEECLELLIS 746 (794)
T ss_pred HHHHhhccc------chHHHHHHHcCCHHHHHHHHHh
Confidence 444444322 2222344455666555555543
No 331
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=73.39 E-value=2.9e+02 Score=35.84 Aligned_cols=63 Identities=11% Similarity=0.073 Sum_probs=54.3
Q ss_pred HHhHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHcCCchhHHHHHHHHHhCC
Q 004487 545 EIMWSSVINSCRIHKNLEFAKKAADQLFKMEKLRDAAPYVAMSNIYAVAGQWESVSQVKKAMRERG 610 (749)
Q Consensus 545 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 610 (749)
..+|-.....++..|.++.|....=.+.+..+ +..+.-.+......|+-..|..+++.-.+..
T Consensus 1670 ge~wLqsAriaR~aG~~q~A~nall~A~e~r~---~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~ 1732 (2382)
T KOG0890|consen 1670 GECWLQSARIARLAGHLQRAQNALLNAKESRL---PEIVLERAKLLWQTGDELNALSVLQEILSKN 1732 (2382)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHhhhhccc---chHHHHHHHHHHhhccHHHHHHHHHHHHHhh
Confidence 56899999999999999999988877777664 6788889999999999999999999877543
No 332
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=73.09 E-value=19 Score=35.39 Aligned_cols=102 Identities=17% Similarity=0.152 Sum_probs=70.5
Q ss_pred hCCCCchhHHHHHHHHhHcCCChhHHHHHHccCCC-CCc-----chHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChh
Q 004487 102 FGYNSILIICNSLVDSYCKIRCLDLARRVFKEMPQ-KDS-----VSFNALITGFAKEGLNEEAIKLFVEMQHLGFKPSDF 175 (749)
Q Consensus 102 ~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-~~~-----~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ 175 (749)
.|......+...++..-.....++++...+-+... |+. .+-.+.++-+. .-++++++.++..=.+.|+-||.+
T Consensus 58 ~g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~~~irlll-ky~pq~~i~~l~npIqYGiF~dqf 136 (418)
T KOG4570|consen 58 RGLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIHTWIRLLL-KYDPQKAIYTLVNPIQYGIFPDQF 136 (418)
T ss_pred cCCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHHHHHHHHH-ccChHHHHHHHhCcchhccccchh
Confidence 34444555556666666666778888877666543 221 11222333333 347778999888888899999999
Q ss_pred hHHHHHHHHhCCCChHHHHHHHHHHHHcC
Q 004487 176 TFAAALSAGVGLADIALGRQVHAFVVKTN 204 (749)
Q Consensus 176 t~~~ll~a~~~~~~~~~a~~~~~~~~~~g 204 (749)
|+..+|+.+.+.++...|.++.-.++...
T Consensus 137 ~~c~l~D~flk~~n~~~aa~vvt~~~~qe 165 (418)
T KOG4570|consen 137 TFCLLMDSFLKKENYKDAASVVTEVMMQE 165 (418)
T ss_pred hHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 99999999999999888888877776544
No 333
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=72.84 E-value=1.9e+02 Score=33.63 Aligned_cols=58 Identities=17% Similarity=0.174 Sum_probs=40.8
Q ss_pred hHHHHHHHHcCCChHHHHHHHhcCCCCCcch-----HHHHHH---HHHcCCChhHHHHHHHHhHhc
Q 004487 9 TNMLISGYVKSGNLATARELFNSMVDRTAVS-----WTILIG---GYSQKNQFREAFKLFVDMRTD 66 (749)
Q Consensus 9 ~~~ll~~~~~~g~~~~A~~~f~~~~~~~~~~-----~~~li~---~~~~~g~~~~a~~l~~~m~~~ 66 (749)
+-.-+..+....++++|..+-+....|++.. ...+.. -+..+|++++|.++|.++..+
T Consensus 310 ~~~qi~~lL~~k~fe~ai~L~e~~~~~~p~~~~~i~~~~~l~~a~~lf~q~~f~ea~~~F~~~~~d 375 (877)
T KOG2063|consen 310 FEKQIQDLLQEKSFEEAISLAEILDSPNPKEKRQISCIKILIDAFELFLQKQFEEAMSLFEKSEID 375 (877)
T ss_pred hHHHHHHHHHhhhHHHHHHHHhccCCCChHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhccC
Confidence 4445667777778999999988877665542 222332 256789999999999987654
No 334
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=72.78 E-value=39 Score=33.10 Aligned_cols=121 Identities=17% Similarity=0.163 Sum_probs=85.7
Q ss_pred HHHHHHHHHcCCChhHHHHHHHHhHhcCCCCCCcchHHHHHHhcCC-CC-ChHHHHHHHHHHHH-hCCCCchhHHHHHHH
Q 004487 40 WTILIGGYSQKNQFREAFKLFVDMRTDGGSDPDYVTFATLLSGCSE-PD-TANELIQVHADIIK-FGYNSILIICNSLVD 116 (749)
Q Consensus 40 ~~~li~~~~~~g~~~~a~~l~~~m~~~~g~~p~~~~~~~ll~~~~~-~~-~~~~a~~~~~~~~~-~g~~~~~~~~~~li~ 116 (749)
|..|+. ++....+|+.+|+....+..+--|..+...+|+.... .+ .+...-++.+.+.. .|-.++..+....|.
T Consensus 134 Y~~LVk---~N~~Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~ 210 (292)
T PF13929_consen 134 YWDLVK---RNKIVVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILE 210 (292)
T ss_pred HHHHHH---hhHHHHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHH
Confidence 665553 3455678888888543212466788888888877665 22 34444455555553 245778888899999
Q ss_pred HhHcCCChhHHHHHHccCCC-----CCcchHHHHHHHHHhCCChhHHHHHHH
Q 004487 117 SYCKIRCLDLARRVFKEMPQ-----KDSVSFNALITGFAKEGLNEEAIKLFV 163 (749)
Q Consensus 117 ~~~~~g~~~~A~~~~~~m~~-----~~~~~~~~li~~~~~~g~~~~A~~l~~ 163 (749)
.+++.+++..-.++++.... .|...|..+|......|+..-...+.+
T Consensus 211 ~L~~~~dW~kl~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~ 262 (292)
T PF13929_consen 211 ILAESRDWNKLFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIID 262 (292)
T ss_pred HHHhcccHHHHHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhh
Confidence 99999999999999876543 488899999999999999865555444
No 335
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=72.51 E-value=7.6 Score=24.87 Aligned_cols=28 Identities=14% Similarity=0.163 Sum_probs=19.2
Q ss_pred HhHHHHHHHHHhcCCHHHHHHHHHHHhc
Q 004487 546 IMWSSVINSCRIHKNLEFAKKAADQLFK 573 (749)
Q Consensus 546 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 573 (749)
.+++.|...|...|++++|+.+++++++
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 4566677777777777777777777665
No 336
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=72.40 E-value=68 Score=33.56 Aligned_cols=140 Identities=14% Similarity=0.123 Sum_probs=95.2
Q ss_pred hccCCHHHHH-HHHHHhHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHhC--CCCCCHHhHHHHHHHHHhcCCHHHH
Q 004487 488 SHCGLIEEGL-QYFNSMTQKYKLRPKKEHYASMVDILCRSGCFDEAEKLMAQM--PFEPDEIMWSSVINSCRIHKNLEFA 564 (749)
Q Consensus 488 ~~~g~~~~a~-~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~ll~~~~~~g~~~~a 564 (749)
...|++-.|- +++..+ +.+.-.|+.... ........|.++.|.+.+... -+.....+...++......|.+++|
T Consensus 300 ~~~gd~~aas~~~~~~l-r~~~~~p~~i~l--~~~i~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l~r~~~a 376 (831)
T PRK15180 300 LADGDIIAASQQLFAAL-RNQQQDPVLIQL--RSVIFSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLARWREA 376 (831)
T ss_pred hhccCHHHHHHHHHHHH-HhCCCCchhhHH--HHHHHHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhchhhHHHH
Confidence 3456665554 455444 444445554333 334567889999999998776 2334567788899999999999999
Q ss_pred HHHHHHHhcCCCCCCchhHHHHHHHHHHcCCchhHHHHHHHHHhCCCccCCceeEEEeCCEEEEEEeCC
Q 004487 565 KKAADQLFKMEKLRDAAPYVAMSNIYAVAGQWESVSQVKKAMRERGVRKVTAYSWVELKSKVHVFTAND 633 (749)
Q Consensus 565 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~s~~~~~~~~~~f~~~~ 633 (749)
....+.|+.-+. .++.....-+..--..|-++++.-.+++...-. ++....|+..-.....|..|.
T Consensus 377 ~s~a~~~l~~ei-e~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~--~~~~~g~v~~~~~~~~~~~~~ 442 (831)
T PRK15180 377 LSTAEMMLSNEI-EDEEVLTVAAGSADALQLFDKSYHYWKRVLLLN--PETQSGWVNFLSSTQYFNDGN 442 (831)
T ss_pred HHHHHHHhcccc-CChhheeeecccHHHHhHHHHHHHHHHHHhccC--ChhcccceeeeccceeccCcc
Confidence 999999998877 777666655555567788999999999886543 333445665544445554443
No 337
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=71.68 E-value=5.3 Score=23.98 Aligned_cols=28 Identities=11% Similarity=0.260 Sum_probs=23.4
Q ss_pred hHHHHHHHHHHcCCchhHHHHHHHHHhC
Q 004487 582 PYVAMSNIYAVAGQWESVSQVKKAMRER 609 (749)
Q Consensus 582 ~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 609 (749)
++..++.+|...|++++|.+.++.+.+.
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~ 29 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKR 29 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 4567888999999999999999988764
No 338
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=71.39 E-value=10 Score=35.07 Aligned_cols=87 Identities=15% Similarity=0.193 Sum_probs=45.9
Q ss_pred HhccCCHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC-HHhHHHHHHHHHhcCCHHH
Q 004487 487 CSHCGLIEEGLQYFNSMTQKYKLRPK-KEHYASMVDILCRSGCFDEAEKLMAQM-PFEPD-EIMWSSVINSCRIHKNLEF 563 (749)
Q Consensus 487 ~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~~ 563 (749)
|-..|.+.-|+--|.... .+.|+ ++.||-|.--+...|+++.|.+.|+.. ...|. ..+...-.-++.--|+++.
T Consensus 75 YDSlGL~~LAR~DftQaL---ai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~YY~gR~~L 151 (297)
T COG4785 75 YDSLGLRALARNDFSQAL---AIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRYKL 151 (297)
T ss_pred hhhhhHHHHHhhhhhhhh---hcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceeeeecCchHh
Confidence 555566666665555444 35554 345555555566666666666666665 44442 1111111112233456666
Q ss_pred HHHHHHHHhcCCC
Q 004487 564 AKKAADQLFKMEK 576 (749)
Q Consensus 564 a~~~~~~~~~~~~ 576 (749)
|.+-+.+..+-+|
T Consensus 152 Aq~d~~~fYQ~D~ 164 (297)
T COG4785 152 AQDDLLAFYQDDP 164 (297)
T ss_pred hHHHHHHHHhcCC
Confidence 6666666666666
No 339
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=70.97 E-value=39 Score=31.16 Aligned_cols=74 Identities=12% Similarity=0.034 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcC--CCCChHHHHHHHHHHHHcCCHHHHH
Q 004487 459 QATLKSFEDMVQSGYQPDSVSLLSVLSACSHCGLIEEGLQYFNSMTQKYK--LRPKKEHYASMVDILCRSGCFDEAE 533 (749)
Q Consensus 459 ~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~--~~p~~~~~~~li~~~~~~g~~~~A~ 533 (749)
+.|++.|-++...+.--+......|. .|-...+.+++++++....+-+. -.+|++.+.+|+..+.+.|+++.|.
T Consensus 123 ~~A~~~fL~~E~~~~l~t~elq~aLA-tyY~krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~AY 198 (203)
T PF11207_consen 123 QEALRRFLQLEGTPELETAELQYALA-TYYTKRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQAY 198 (203)
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHH-HHHHccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhhh
Confidence 45666666666655433333333333 33335566677766666554322 2455666666666666666666553
No 340
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=70.94 E-value=97 Score=29.38 Aligned_cols=58 Identities=12% Similarity=0.024 Sum_probs=32.0
Q ss_pred HHHHHHHc-CCHHHHHHHHHhC-----CCCCCHHhHHHHHHH---HHhcCCHHHHHHHHHHHhcCCC
Q 004487 519 MVDILCRS-GCFDEAEKLMAQM-----PFEPDEIMWSSVINS---CRIHKNLEFAKKAADQLFKMEK 576 (749)
Q Consensus 519 li~~~~~~-g~~~~A~~~~~~~-----~~~p~~~~~~~ll~~---~~~~g~~~~a~~~~~~~~~~~~ 576 (749)
+.+.|-.. .++++|+..++.. +-+.+...-..++.. -...+++.+|+.+|+++.....
T Consensus 119 iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~ 185 (288)
T KOG1586|consen 119 IAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSL 185 (288)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34444433 4555555555554 122233333344432 2466788999999998876554
No 341
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=70.71 E-value=19 Score=35.75 Aligned_cols=86 Identities=14% Similarity=0.135 Sum_probs=61.1
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHHc-
Q 004487 449 ISACAQNGDAQATLKSFEDMVQSGYQP-DSVSLLSVLSACSHCGLIEEGLQYFNSMTQKYKLRPKKEHYASMVDILCRS- 526 (749)
Q Consensus 449 i~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~- 526 (749)
.+-|.+.|.+++|+..|..-.. +.| |.+++..-..||.+...+..|..-...... . -...+.+|.|.
T Consensus 104 GN~yFKQgKy~EAIDCYs~~ia--~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~Aia-----L----d~~Y~KAYSRR~ 172 (536)
T KOG4648|consen 104 GNTYFKQGKYEEAIDCYSTAIA--VYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIA-----L----DKLYVKAYSRRM 172 (536)
T ss_pred hhhhhhccchhHHHHHhhhhhc--cCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHH-----h----hHHHHHHHHHHH
Confidence 3569999999999999999887 667 899999999999999888877765554432 1 12345566655
Q ss_pred ------CCHHHHHHHHHhC-CCCCCH
Q 004487 527 ------GCFDEAEKLMAQM-PFEPDE 545 (749)
Q Consensus 527 ------g~~~~A~~~~~~~-~~~p~~ 545 (749)
|...||.+-.+.. .++|+.
T Consensus 173 ~AR~~Lg~~~EAKkD~E~vL~LEP~~ 198 (536)
T KOG4648|consen 173 QARESLGNNMEAKKDCETVLALEPKN 198 (536)
T ss_pred HHHHHHhhHHHHHHhHHHHHhhCccc
Confidence 4555665555554 566763
No 342
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=70.49 E-value=1.2e+02 Score=33.75 Aligned_cols=26 Identities=15% Similarity=0.215 Sum_probs=17.4
Q ss_pred cchHHHHHHHHHcCCChhHHHHHHHHh
Q 004487 37 AVSWTILIGGYSQKNQFREAFKLFVDM 63 (749)
Q Consensus 37 ~~~~~~li~~~~~~g~~~~a~~l~~~m 63 (749)
..-|+ .+..+.-.|.+++|.+++...
T Consensus 149 p~FW~-~v~~lvlrG~~~~a~~lL~~~ 174 (566)
T PF07575_consen 149 PDFWD-YVQRLVLRGLFDQARQLLRLH 174 (566)
T ss_dssp HHHHH-HHHHHHHTT-HHHHHHHH-TT
T ss_pred hhHHH-HHHHHHHcCCHHHHHHHHHhc
Confidence 44465 677778888888888888544
No 343
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=70.31 E-value=10 Score=26.41 Aligned_cols=32 Identities=16% Similarity=0.154 Sum_probs=24.4
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhcCCCCCCchhH
Q 004487 551 VINSCRIHKNLEFAKKAADQLFKMEKLRDAAPY 583 (749)
Q Consensus 551 ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 583 (749)
+.-++.+.|+++.|.+..+.+++.+| .|..+-
T Consensus 7 lAig~ykl~~Y~~A~~~~~~lL~~eP-~N~Qa~ 38 (53)
T PF14853_consen 7 LAIGHYKLGEYEKARRYCDALLEIEP-DNRQAQ 38 (53)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHHHHTT-S-HHHH
T ss_pred HHHHHHHhhhHHHHHHHHHHHHhhCC-CcHHHH
Confidence 45577889999999999999999999 665543
No 344
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=70.06 E-value=8.6 Score=22.18 Aligned_cols=29 Identities=7% Similarity=0.024 Sum_probs=14.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhcCCC
Q 004487 548 WSSVINSCRIHKNLEFAKKAADQLFKMEK 576 (749)
Q Consensus 548 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~ 576 (749)
|..+...+...|+.+.|...+++.++..|
T Consensus 4 ~~~~a~~~~~~~~~~~a~~~~~~~~~~~~ 32 (34)
T smart00028 4 LYNLGNAYLKLGDYDEALEYYEKALELDP 32 (34)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHccCC
Confidence 33444444555555555555555555444
No 345
>PRK12798 chemotaxis protein; Reviewed
Probab=70.01 E-value=1.4e+02 Score=31.01 Aligned_cols=205 Identities=15% Similarity=0.232 Sum_probs=134.5
Q ss_pred cCCHHHHHHHHhhCCC----CCcchHHHHHHHH-HhcCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHhccCCHH
Q 004487 424 SGSLKDAIQTFKEMPE----RNIVSWNALISAC-AQNGDAQATLKSFEDMVQSGYQPDS----VSLLSVLSACSHCGLIE 494 (749)
Q Consensus 424 ~g~~~~A~~~~~~~~~----~~~~~~~~li~~~-~~~g~~~~A~~~~~~m~~~g~~p~~----~t~~~ll~a~~~~g~~~ 494 (749)
.|+.++|.+.+..+.. +....+-.|+.+- ....++.+|+++|++..- ..|.. .....-+......|+.+
T Consensus 125 ~Gr~~~a~~~La~i~~~~l~~~lg~~laLv~a~l~~~~dP~~Al~~lD~aRL--laPGTLvEEAALRRsi~la~~~g~~~ 202 (421)
T PRK12798 125 SGRGREARKLLAGVAPEYLPAELGAYLALVQGNLMVATDPATALKLLDQARL--LAPGTLVEEAALRRSLFIAAQLGDAD 202 (421)
T ss_pred cCCHHHHHHHhhcCChhhcCchhhhHHHHHHHHHhcccCHHHHHHHHHHHHH--hCCchHHHHHHHHHhhHHHHhcCcHH
Confidence 5889999999988873 4556677777664 456789999999998876 45543 34444455678899999
Q ss_pred HHHHHHHHhHHhcCCCCChHHHHH-HHHHHHHcC---CHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHH
Q 004487 495 EGLQYFNSMTQKYKLRPKKEHYAS-MVDILCRSG---CFDEAEKLMAQMPFEPDEIMWSSVINSCRIHKNLEFAKKAADQ 570 (749)
Q Consensus 495 ~a~~~~~~m~~~~~~~p~~~~~~~-li~~~~~~g---~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~ 570 (749)
++..+-......|.-.|=...|.. ++..+.+.+ ..+.-..++..|.-.--..+|-.+...-...|+.+.|....++
T Consensus 203 rf~~la~~Y~rRF~~S~YA~~F~~~F~~~~~~~~d~~~~~~l~~~ls~~d~~~q~~lYL~iAR~Ali~Gk~~lA~~As~~ 282 (421)
T PRK12798 203 KFEALARNYLRRFRHSPYASQFAQRFVDLVVRLDDEIRDARLVEILSFMDPERQRELYLRIARAALIDGKTELARFASER 282 (421)
T ss_pred HHHHHHHHHHHHhccCchHHHHHHHHHHHHHhccccccHHHHHHHHHhcCchhHHHHHHHHHHHHHHcCcHHHHHHHHHH
Confidence 998888887777666664433332 333333333 3444555566653222356888888888899999999999999
Q ss_pred HhcCCCCCCchhHHHHHHHHHHc-----CCchhHHHHHHHHHhCCCccCCceeEEEeCCEEEEEEeCCCCCcChHHHHHH
Q 004487 571 LFKMEKLRDAAPYVAMSNIYAVA-----GQWESVSQVKKAMRERGVRKVTAYSWVELKSKVHVFTANDELHPQTNEIRRK 645 (749)
Q Consensus 571 ~~~~~~~~~~~~~~~l~~~~~~~-----g~~~~a~~~~~~m~~~g~~~~~~~s~~~~~~~~~~f~~~~~~~~~~~~~~~~ 645 (749)
+..+.. . ...-...+.+|... .+.+++.+.+..+-. +..+|+...+...
T Consensus 283 A~~L~~-~-~~~~~~ra~LY~aaa~v~s~~~~~al~~L~~I~~------------------------~~L~~~Dr~Ll~A 336 (421)
T PRK12798 283 ALKLAD-P-DSADAARARLYRGAALVASDDAESALEELSQIDR------------------------DKLSERDRALLEA 336 (421)
T ss_pred HHHhcc-C-CCcchHHHHHHHHHHccCcccHHHHHHHHhcCCh------------------------hhCChhhHHHHHH
Confidence 998875 2 33333445555433 334444444433211 2457777777777
Q ss_pred HHHHHHHHHHc
Q 004487 646 IENLMQEMKKE 656 (749)
Q Consensus 646 l~~l~~~m~~~ 656 (749)
...+...+.+.
T Consensus 337 A~~va~~V~~~ 347 (421)
T PRK12798 337 ARSVARQVRRA 347 (421)
T ss_pred HHHHHHHHhcC
Confidence 77777777664
No 346
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=69.71 E-value=4.2 Score=25.11 Aligned_cols=21 Identities=24% Similarity=0.512 Sum_probs=10.4
Q ss_pred hHHHHHHHHHHHHcCCHHHHH
Q 004487 513 KEHYASMVDILCRSGCFDEAE 533 (749)
Q Consensus 513 ~~~~~~li~~~~~~g~~~~A~ 533 (749)
...|..+...|...|++++|+
T Consensus 13 ~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 13 AEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred HHHHHHHHHHHHHCcCHHhhc
Confidence 344455555555555555443
No 347
>PF13934 ELYS: Nuclear pore complex assembly
Probab=67.74 E-value=1e+02 Score=29.42 Aligned_cols=71 Identities=17% Similarity=0.193 Sum_probs=31.9
Q ss_pred HHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHHhHHHHHHHHHh
Q 004487 483 VLSACSHCGLIEEGLQYFNSMTQKYKLRPKKEHYASMVDILCRSGCFDEAEKLMAQMPFEPDEIMWSSVINSCRI 557 (749)
Q Consensus 483 ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~ 557 (749)
++.++...|+.+.|+.+++.... .-.+.+....+... ..++.+.||..+.+...-.-....|..++..|..
T Consensus 114 Il~~L~~~~~~~lAL~y~~~~~p---~l~s~~~~~~~~~~-La~~~v~EAf~~~R~~~~~~~~~l~e~l~~~~~~ 184 (226)
T PF13934_consen 114 ILQALLRRGDPKLALRYLRAVGP---PLSSPEALTLYFVA-LANGLVTEAFSFQRSYPDELRRRLFEQLLEHCLE 184 (226)
T ss_pred HHHHHHHCCChhHHHHHHHhcCC---CCCCHHHHHHHHHH-HHcCCHHHHHHHHHhCchhhhHHHHHHHHHHHHH
Confidence 44444445666666666654321 11122222222223 3446666666666555321113355555555543
No 348
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=66.93 E-value=14 Score=38.66 Aligned_cols=85 Identities=12% Similarity=0.137 Sum_probs=66.1
Q ss_pred HHHcCCHHHHHHHHHhC-CCCCCHHhHHHHH-HHHHhcCCHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHcCCchhHH
Q 004487 523 LCRSGCFDEAEKLMAQM-PFEPDEIMWSSVI-NSCRIHKNLEFAKKAADQLFKMEKLRDAAPYVAMSNIYAVAGQWESVS 600 (749)
Q Consensus 523 ~~~~g~~~~A~~~~~~~-~~~p~~~~~~~ll-~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 600 (749)
+...+.++.|..++.++ ...|+-..|-+.- .++.+.+++..|+.-+.++++.+| .....|+.-+.++...+++.+|.
T Consensus 14 ~l~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP-~~~K~Y~rrg~a~m~l~~~~~A~ 92 (476)
T KOG0376|consen 14 ALKDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDP-TYIKAYVRRGTAVMALGEFKKAL 92 (476)
T ss_pred hcccchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCc-hhhheeeeccHHHHhHHHHHHHH
Confidence 44556677777777666 6677655443333 677888999999999999999999 88888888889999999999998
Q ss_pred HHHHHHHh
Q 004487 601 QVKKAMRE 608 (749)
Q Consensus 601 ~~~~~m~~ 608 (749)
..++.-..
T Consensus 93 ~~l~~~~~ 100 (476)
T KOG0376|consen 93 LDLEKVKK 100 (476)
T ss_pred HHHHHhhh
Confidence 88876543
No 349
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=66.84 E-value=20 Score=33.24 Aligned_cols=60 Identities=12% Similarity=0.041 Sum_probs=44.2
Q ss_pred HHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHhHHHHHHHHHhcCCHHHHHHHHHHHhcCCC
Q 004487 517 ASMVDILCRSGCFDEAEKLMAQM-PFEP-DEIMWSSVINSCRIHKNLEFAKKAADQLFKMEK 576 (749)
Q Consensus 517 ~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~ 576 (749)
+.-+..+.+.+.+++|+...+.- .-+| |...-..|+.-++..|++++|..-++-+-++.|
T Consensus 5 ~~t~seLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p 66 (273)
T COG4455 5 RDTISELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSP 66 (273)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCc
Confidence 34456677788888888876554 5556 455566677788888888888888888888887
No 350
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=66.36 E-value=1.9e+02 Score=30.95 Aligned_cols=49 Identities=16% Similarity=0.244 Sum_probs=24.6
Q ss_pred cCHHhHHHHHHHhcccCcHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhc
Q 004487 374 ADQATFASILRASAELASLSLGKQLHSFVIRSGFMSNVFSGSALLDMYAKS 424 (749)
Q Consensus 374 p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~ 424 (749)
.|.....+++..+.........+.+...+...| .+...+-.++..|...
T Consensus 64 l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en 112 (711)
T COG1747 64 LDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN 112 (711)
T ss_pred ccchHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc
Confidence 355555566666655555555555555555443 1233344444444444
No 351
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=66.33 E-value=9 Score=22.91 Aligned_cols=26 Identities=12% Similarity=-0.028 Sum_probs=20.4
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhcCCC
Q 004487 551 VINSCRIHKNLEFAKKAADQLFKMEK 576 (749)
Q Consensus 551 ll~~~~~~g~~~~a~~~~~~~~~~~~ 576 (749)
+..++...|+.++|...++++++..|
T Consensus 6 ~a~~~~~~g~~~~A~~~~~~~~~~~P 31 (33)
T PF13174_consen 6 LARCYYKLGDYDEAIEYFQRLIKRYP 31 (33)
T ss_dssp HHHHHHHHCHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHccCHHHHHHHHHHHHHHCc
Confidence 45566777888888888888888777
No 352
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=65.95 E-value=1.1e+02 Score=33.91 Aligned_cols=85 Identities=15% Similarity=0.099 Sum_probs=47.9
Q ss_pred CHHHHHHHHHhCC--CCCCHHhHHHHHHHH--HhcCCHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHcCCchhHHHHH
Q 004487 528 CFDEAEKLMAQMP--FEPDEIMWSSVINSC--RIHKNLEFAKKAADQLFKMEKLRDAAPYVAMSNIYAVAGQWESVSQVK 603 (749)
Q Consensus 528 ~~~~A~~~~~~~~--~~p~~~~~~~ll~~~--~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 603 (749)
+...|.++|.... -.++...+-++.-.+ ....+.+.|...++++-+.++ +....-......+.. ++++.+.-..
T Consensus 343 d~~~A~~yy~~Aa~~G~~~A~~~la~~y~~G~gv~r~~~~A~~~~k~aA~~g~-~~A~~~~~~~~~~g~-~~~~~~~~~~ 420 (552)
T KOG1550|consen 343 DYRRAFEYYSLAAKAGHILAIYRLALCYELGLGVERNLELAFAYYKKAAEKGN-PSAAYLLGAFYEYGV-GRYDTALALY 420 (552)
T ss_pred cHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHHccC-hhhHHHHHHHHHHcc-ccccHHHHHH
Confidence 4556777766651 122333333322222 234478888888888888774 332222222333333 8888888888
Q ss_pred HHHHhCCCccC
Q 004487 604 KAMRERGVRKV 614 (749)
Q Consensus 604 ~~m~~~g~~~~ 614 (749)
..+.+.|.+..
T Consensus 421 ~~~a~~g~~~~ 431 (552)
T KOG1550|consen 421 LYLAELGYEVA 431 (552)
T ss_pred HHHHHhhhhHH
Confidence 88877776543
No 353
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=65.70 E-value=72 Score=28.87 Aligned_cols=45 Identities=9% Similarity=0.180 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHcCCchhHHHHHHHHHhCCCcc
Q 004487 561 LEFAKKAADQLFKMEKLRDAAPYVAMSNIYAVAGQWESVSQVKKAMRERGVRK 613 (749)
Q Consensus 561 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~ 613 (749)
+++|...|+++.+.+| +...|..-..+. ++|-+++.++.+.+...
T Consensus 96 F~kA~~~FqkAv~~~P--~ne~Y~ksLe~~------~kap~lh~e~~~~~~~~ 140 (186)
T PF06552_consen 96 FEKATEYFQKAVDEDP--NNELYRKSLEMA------AKAPELHMEIHKQGLGQ 140 (186)
T ss_dssp HHHHHHHHHHHHHH-T--T-HHHHHHHHHH------HTHHHHHHHHHHSSS--
T ss_pred HHHHHHHHHHHHhcCC--CcHHHHHHHHHH------HhhHHHHHHHHHHHhhh
Confidence 5778888888899998 555665555444 46888888887776644
No 354
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=65.62 E-value=1.3e+02 Score=28.80 Aligned_cols=55 Identities=13% Similarity=0.034 Sum_probs=29.3
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhc----CCCC-CCchhHHHHHHHHHHcCCchhHHHHHHH
Q 004487 551 VINSCRIHKNLEFAKKAADQLFK----MEKL-RDAAPYVAMSNIYAVAGQWESVSQVKKA 605 (749)
Q Consensus 551 ll~~~~~~g~~~~a~~~~~~~~~----~~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 605 (749)
.-..+.+...+++|-..+.+-.. .+.. .-...|+..+-.|....++..|.+.++.
T Consensus 156 ~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~ 215 (308)
T KOG1585|consen 156 CSRVLVRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRD 215 (308)
T ss_pred hhhHhhhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcc
Confidence 33444555556666555544322 1110 1223466666677777777777776653
No 355
>PHA02875 ankyrin repeat protein; Provisional
Probab=65.41 E-value=1.2e+02 Score=32.14 Aligned_cols=77 Identities=9% Similarity=0.008 Sum_probs=34.6
Q ss_pred HcCCChhHHHHHHHHhHhcCCCCCCcch--HHHHHHhcCCCCChHHHHHHHHHHHHhCCCCchh--HHHHHHHHhHcCCC
Q 004487 48 SQKNQFREAFKLFVDMRTDGGSDPDYVT--FATLLSGCSEPDTANELIQVHADIIKFGYNSILI--ICNSLVDSYCKIRC 123 (749)
Q Consensus 48 ~~~g~~~~a~~l~~~m~~~~g~~p~~~~--~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~--~~~~li~~~~~~g~ 123 (749)
++.|+.+-+..++ +. |..|+... ..+.|..++..++.+ +.+.+++.|..|+.. ...+.+...++.|+
T Consensus 10 ~~~g~~~iv~~Ll----~~-g~~~n~~~~~g~tpL~~A~~~~~~~----~v~~Ll~~ga~~~~~~~~~~t~L~~A~~~g~ 80 (413)
T PHA02875 10 ILFGELDIARRLL----DI-GINPNFEIYDGISPIKLAMKFRDSE----AIKLLMKHGAIPDVKYPDIESELHDAVEEGD 80 (413)
T ss_pred HHhCCHHHHHHHH----HC-CCCCCccCCCCCCHHHHHHHcCCHH----HHHHHHhCCCCccccCCCcccHHHHHHHCCC
Confidence 4456654444333 33 65555432 223333334445543 334445555544321 11223334445566
Q ss_pred hhHHHHHHcc
Q 004487 124 LDLARRVFKE 133 (749)
Q Consensus 124 ~~~A~~~~~~ 133 (749)
.+.+..+++.
T Consensus 81 ~~~v~~Ll~~ 90 (413)
T PHA02875 81 VKAVEELLDL 90 (413)
T ss_pred HHHHHHHHHc
Confidence 6665555554
No 356
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=65.03 E-value=1.1e+02 Score=27.62 Aligned_cols=118 Identities=17% Similarity=0.241 Sum_probs=83.4
Q ss_pred HHhcCCHHHHHHHHhhCCCCCcchHHHHH-----HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH---HHhccCC
Q 004487 421 YAKSGSLKDAIQTFKEMPERNIVSWNALI-----SACAQNGDAQATLKSFEDMVQSGYQPDSVSLLSVLS---ACSHCGL 492 (749)
Q Consensus 421 y~~~g~~~~A~~~~~~~~~~~~~~~~~li-----~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~---a~~~~g~ 492 (749)
.++.+..++|..-|..+.+.+...|..|. ...++.|+...|...|++.-...-.|-..-=..-+. .+...|.
T Consensus 68 lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gs 147 (221)
T COG4649 68 LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGS 147 (221)
T ss_pred HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhcccc
Confidence 46778899999999999887777776654 346788999999999999887555554442222222 3567888
Q ss_pred HHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHhC
Q 004487 493 IEEGLQYFNSMTQKYKLRPKKEHYASMVDILCRSGCFDEAEKLMAQM 539 (749)
Q Consensus 493 ~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~ 539 (749)
+++...-.+-+..+ +-+.....-.+|.-+-.+.|++.+|.+.|..+
T Consensus 148 y~dV~srvepLa~d-~n~mR~sArEALglAa~kagd~a~A~~~F~qi 193 (221)
T COG4649 148 YDDVSSRVEPLAGD-GNPMRHSAREALGLAAYKAGDFAKAKSWFVQI 193 (221)
T ss_pred HHHHHHHhhhccCC-CChhHHHHHHHHhHHHHhccchHHHHHHHHHH
Confidence 88887777665432 21112233346777777999999999999887
No 357
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=64.72 E-value=30 Score=32.70 Aligned_cols=65 Identities=8% Similarity=0.020 Sum_probs=44.3
Q ss_pred HhHHHHHHHHHhcCCH-------HHHHHHHHHHhcCCCC-----CCchhHHHHHHHHHHcCCchhHHHHHHHHHhCC
Q 004487 546 IMWSSVINSCRIHKNL-------EFAKKAADQLFKMEKL-----RDAAPYVAMSNIYAVAGQWESVSQVKKAMRERG 610 (749)
Q Consensus 546 ~~~~~ll~~~~~~g~~-------~~a~~~~~~~~~~~~~-----~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 610 (749)
.++.-+...|+..|+- ..|...|+++.+.+.. +.......++.++.+.|+.++|.+.+..+...+
T Consensus 119 ~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~ 195 (214)
T PF09986_consen 119 GLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGSK 195 (214)
T ss_pred HHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCC
Confidence 3444455567777764 4455556666554431 234567789999999999999999999987653
No 358
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=64.54 E-value=4.3e+02 Score=34.43 Aligned_cols=318 Identities=10% Similarity=0.010 Sum_probs=159.2
Q ss_pred HHhcCCCCChHHHHHHHHHH----HHhCCCCchhHHHHHHHHhHcCCChhHHHHHHc-cCCCCCcchHHHHHHHHHhCCC
Q 004487 80 LSGCSEPDTANELIQVHADI----IKFGYNSILIICNSLVDSYCKIRCLDLARRVFK-EMPQKDSVSFNALITGFAKEGL 154 (749)
Q Consensus 80 l~~~~~~~~~~~a~~~~~~~----~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~-~m~~~~~~~~~~li~~~~~~g~ 154 (749)
..+-.+.+.+..|...++.- .+. ......+-.+...|+.-+++|....+.. ....++ ...-|-.....|+
T Consensus 1390 a~aSfrc~~y~RalmylEs~~~~ek~~--~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a~~s---l~~qil~~e~~g~ 1464 (2382)
T KOG0890|consen 1390 ARASFRCKAYARALMYLESHRSTEKEK--ETEEALYFLLQNLYGSIHDPDGVEGVSARRFADPS---LYQQILEHEASGN 1464 (2382)
T ss_pred HHHHHhhHHHHHHHHHHHHhccccchh--HHHHHHHHHHHHHHHhcCCcchhhhHHHHhhcCcc---HHHHHHHHHhhcc
Confidence 33444556666666666652 111 1123344555668999899888887776 333343 2334556677899
Q ss_pred hhHHHHHHHHHHHCCCCCC-hhhHHHHHHHHhCCCChHHHHHHHHHHHHcCCCCChhHHH-HHHHHHHcCCChHHHHHHH
Q 004487 155 NEEAIKLFVEMQHLGFKPS-DFTFAAALSAGVGLADIALGRQVHAFVVKTNFVENVFVAN-ALLDLYSKHDCVVEARKLF 232 (749)
Q Consensus 155 ~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~-~Li~~y~~~g~~~~A~~~f 232 (749)
++.|...|+.+.+.+ |+ ..+++-+++..-..+.+....-..+..... ..+....++ .=+.+--+.++++......
T Consensus 1465 ~~da~~Cye~~~q~~--p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~-~se~~~~~~s~~~eaaW~l~qwD~~e~~l 1541 (2382)
T KOG0890|consen 1465 WADAAACYERLIQKD--PDKEKHHSGVLKSMLAIQHLSTEILHLDGLIIN-RSEEVDELNSLGVEAAWRLSQWDLLESYL 1541 (2382)
T ss_pred HHHHHHHHHHhhcCC--CccccchhhHHHhhhcccchhHHHhhhcchhhc-cCHHHHHHHHHHHHHHhhhcchhhhhhhh
Confidence 999999999998764 44 667887887777777776655433332221 122222222 2234446777777776666
Q ss_pred ccCCCCCcchHHHH-HH-HHHhcCChh--HHHHHHHHHHHCCCCCCcchHHHHHHHHHccCChHHHHHHHHHHHHhcCCc
Q 004487 233 GEMPEVDGVSYNVM-IT-CYAWNEQYK--ESLKLFRELQFTRFDRSQFPFSTLLSVVANKLDLQIGRQIHTQTIVTTAIS 308 (749)
Q Consensus 233 ~~~~~~~~~~~~~l-i~-~~~~~g~~~--~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~ 308 (749)
. +++..+|.+. +. ...+...-+ .-.+..+.+++. +..-+.+|+..+.+.
T Consensus 1542 ~---~~n~e~w~~~~~g~~ll~~~~kD~~~~~~~i~~~r~~--------~i~~lsa~s~~~Sy~---------------- 1594 (2382)
T KOG0890|consen 1542 S---DRNIEYWSVESIGKLLLRNKKKDEIATLDLIENSREL--------VIENLSACSIEGSYV---------------- 1594 (2382)
T ss_pred h---cccccchhHHHHHHHHHhhcccchhhHHHHHHHHHHH--------hhhhHHHhhccchHH----------------
Confidence 5 5667777766 32 222222111 111233333221 111122333332211
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHHhcCCCCc-----ccHHHHHHHHHhCCChhHHHHHHH-HHHHCCCCc-----CHH
Q 004487 309 EVKVANSLVDMYAKCGRFEEAKEIFANLSHIST-----VPWTAMISAYVQKGNLEEALNLFI-EMCRANISA-----DQA 377 (749)
Q Consensus 309 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-----~~~~~li~~~~~~g~~~~A~~l~~-~m~~~g~~p-----~~~ 377 (749)
..|..++....-+.--... +.+......+. .-|-.-+.--....+..+-+--++ .+......| -..
T Consensus 1595 --~~Y~~~~kLH~l~el~~~~-~~l~~~s~~~~s~~~sd~W~~Rl~~tq~s~~~~epILa~RRs~l~~~~~~~~~~~~ge 1671 (2382)
T KOG0890|consen 1595 --RSYEILMKLHLLLELENSI-EELKKVSYDEDSANNSDNWKNRLERTQPSFRIKEPILAFRRSMLDLRMRSNLKSRLGE 1671 (2382)
T ss_pred --HHHHHHHHHHHHHHHHHHH-HHhhccCccccccccchhHHHHHHHhchhHHHHhHHHHHHHHHHHHhccccccchhHH
Confidence 2233333333322211111 22222221111 113332221111111122111111 122211122 235
Q ss_pred hHHHHHHHhcccCcHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCC
Q 004487 378 TFASILRASAELASLSLGKQLHSFVIRSGFMSNVFSGSALLDMYAKSGSLKDAIQTFKEMP 438 (749)
Q Consensus 378 t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~ 438 (749)
+|....+.+...|.++.|....-.+.+.+ .| .++--.....-..|+...|..++++..
T Consensus 1672 ~wLqsAriaR~aG~~q~A~nall~A~e~r-~~--~i~~E~AK~lW~~gd~~~Al~~Lq~~l 1729 (2382)
T KOG0890|consen 1672 CWLQSARIARLAGHLQRAQNALLNAKESR-LP--EIVLERAKLLWQTGDELNALSVLQEIL 1729 (2382)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHhhhhcc-cc--hHHHHHHHHHHhhccHHHHHHHHHHHH
Confidence 67777777778888888887666555555 33 334445566777899999998888654
No 359
>PHA02875 ankyrin repeat protein; Provisional
Probab=63.87 E-value=2e+02 Score=30.43 Aligned_cols=148 Identities=8% Similarity=-0.026 Sum_probs=61.5
Q ss_pred HHHHHcCCChHHHHHHHccCCCC----CcchHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCcch--HHHHHHHHHccC
Q 004487 216 LDLYSKHDCVVEARKLFGEMPEV----DGVSYNVMITCYAWNEQYKESLKLFRELQFTRFDRSQFP--FSTLLSVVANKL 289 (749)
Q Consensus 216 i~~y~~~g~~~~A~~~f~~~~~~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t--~~~ll~~~~~~~ 289 (749)
+...++.|+.+.+..+++.-... +...++ .+...+..|+. ++++.+.+.|..|+... -.+.+...+..|
T Consensus 72 L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t-pL~~A~~~~~~----~iv~~Ll~~gad~~~~~~~g~tpLh~A~~~~ 146 (413)
T PHA02875 72 LHDAVEEGDVKAVEELLDLGKFADDVFYKDGMT-PLHLATILKKL----DIMKLLIARGADPDIPNTDKFSPLHLAVMMG 146 (413)
T ss_pred HHHHHHCCCHHHHHHHHHcCCcccccccCCCCC-HHHHHHHhCCH----HHHHHHHhCCCCCCCCCCCCCCHHHHHHHcC
Confidence 33444556666555555443221 111122 22223344443 34444555565554322 122333444455
Q ss_pred ChHHHHHHHHHHHHhcCCcch--hHHHHHHHHHHhcCCHHHHHHHHHhcCCCCccc---HHHHHHHHHhCCChhHHHHHH
Q 004487 290 DLQIGRQIHTQTIVTTAISEV--KVANSLVDMYAKCGRFEEAKEIFANLSHISTVP---WTAMISAYVQKGNLEEALNLF 364 (749)
Q Consensus 290 ~~~~a~~~~~~~~~~g~~~~~--~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~li~~~~~~g~~~~A~~l~ 364 (749)
+.+..+.+. +.|..++. ....+.+...+..|+.+-+.-+++.-...+... ..+.+...+..|+.+ +.
T Consensus 147 ~~~~v~~Ll----~~g~~~~~~d~~g~TpL~~A~~~g~~eiv~~Ll~~ga~~n~~~~~~~~t~l~~A~~~~~~~----iv 218 (413)
T PHA02875 147 DIKGIELLI----DHKACLDIEDCCGCTPLIIAMAKGDIAICKMLLDSGANIDYFGKNGCVAALCYAIENNKID----IV 218 (413)
T ss_pred CHHHHHHHH----hcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCcCCCCCCchHHHHHHHcCCHH----HH
Confidence 555443333 33332221 111223334455666666655555433332222 123333334445443 33
Q ss_pred HHHHHCCCCcCH
Q 004487 365 IEMCRANISADQ 376 (749)
Q Consensus 365 ~~m~~~g~~p~~ 376 (749)
+.+.+.|..++.
T Consensus 219 ~~Ll~~gad~n~ 230 (413)
T PHA02875 219 RLFIKRGADCNI 230 (413)
T ss_pred HHHHHCCcCcch
Confidence 444556665553
No 360
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=63.54 E-value=80 Score=25.71 Aligned_cols=79 Identities=15% Similarity=0.160 Sum_probs=45.2
Q ss_pred cHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004487 391 SLSLGKQLHSFVIRSGFMSNVFSGSALLDMYAKSGSLKDAIQTFKEMPERNIVSWNALISACAQNGDAQATLKSFEDMVQ 470 (749)
Q Consensus 391 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 470 (749)
..++|..|.+.+...+- ....+.-.-+..+.+.|++++|...=.....||...|-+|-. .+.|..+++...+.++..
T Consensus 21 cH~EA~tIa~wL~~~~~-~~E~v~lIr~~sLmNrG~Yq~ALl~~~~~~~pdL~p~~AL~a--~klGL~~~~e~~l~rla~ 97 (116)
T PF09477_consen 21 CHQEANTIADWLEQEGE-MEEVVALIRLSSLMNRGDYQEALLLPQCHCYPDLEPWAALCA--WKLGLASALESRLTRLAS 97 (116)
T ss_dssp -HHHHHHHHHHHHHTTT-THHHHHHHHHHHHHHTT-HHHHHHHHTTS--GGGHHHHHHHH--HHCT-HHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHhhHHHHHHHHhcccCCCccHHHHHHHHH--HhhccHHHHHHHHHHHHh
Confidence 34566666666655543 222222333445677888888855555555788888876643 467777777777777766
Q ss_pred CC
Q 004487 471 SG 472 (749)
Q Consensus 471 ~g 472 (749)
+|
T Consensus 98 ~g 99 (116)
T PF09477_consen 98 SG 99 (116)
T ss_dssp -S
T ss_pred CC
Confidence 55
No 361
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=61.97 E-value=6.2 Score=39.10 Aligned_cols=87 Identities=17% Similarity=0.226 Sum_probs=51.7
Q ss_pred cCCHHHHHHHHHhC-CCCCC-HHhHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHcCCchhHHHHH
Q 004487 526 SGCFDEAEKLMAQM-PFEPD-EIMWSSVINSCRIHKNLEFAKKAADQLFKMEKLRDAAPYVAMSNIYAVAGQWESVSQVK 603 (749)
Q Consensus 526 ~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 603 (749)
.|.+++|++.+... +..|. ...|.--.+++.+.+....|++-+..++++.| +....|-.-..+....|+|++|.+.+
T Consensus 127 ~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~-Dsa~~ykfrg~A~rllg~~e~aa~dl 205 (377)
T KOG1308|consen 127 DGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINP-DSAKGYKFRGYAERLLGNWEEAAHDL 205 (377)
T ss_pred CcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCc-ccccccchhhHHHHHhhchHHHHHHH
Confidence 44555555555544 33332 33333334445556666666666677777776 66666666666666677777777777
Q ss_pred HHHHhCCCcc
Q 004487 604 KAMRERGVRK 613 (749)
Q Consensus 604 ~~m~~~g~~~ 613 (749)
....+.+...
T Consensus 206 ~~a~kld~dE 215 (377)
T KOG1308|consen 206 ALACKLDYDE 215 (377)
T ss_pred HHHHhccccH
Confidence 6666665544
No 362
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=61.72 E-value=1.7e+02 Score=28.95 Aligned_cols=20 Identities=5% Similarity=0.074 Sum_probs=13.7
Q ss_pred HHHHhcCCHHHHHHHHHHHH
Q 004487 450 SACAQNGDAQATLKSFEDMV 469 (749)
Q Consensus 450 ~~~~~~g~~~~A~~~~~~m~ 469 (749)
..+.+.+++++|.+.|+-..
T Consensus 254 ~~~~~~k~y~~A~~w~~~al 273 (278)
T PF08631_consen 254 KKHYKAKNYDEAIEWYELAL 273 (278)
T ss_pred HHHHhhcCHHHHHHHHHHHH
Confidence 33456788888888887543
No 363
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=61.69 E-value=2.8e+02 Score=31.33 Aligned_cols=45 Identities=22% Similarity=0.349 Sum_probs=23.7
Q ss_pred HhcCCHHHHHHHHHhcCCC----------CcccHHHHHHH--HHhCCChhHHHHHHH
Q 004487 321 AKCGRFEEAKEIFANLSHI----------STVPWTAMISA--YVQKGNLEEALNLFI 365 (749)
Q Consensus 321 ~~~g~~~~A~~~~~~~~~~----------~~~~~~~li~~--~~~~g~~~~A~~l~~ 365 (749)
.-.+++..|...++.+.+. ...++..++.| +...|+.+.|+..|.
T Consensus 372 ~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~ 428 (608)
T PF10345_consen 372 FIRGDWSKATQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQ 428 (608)
T ss_pred HHCcCHHHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHh
Confidence 3456676676666655421 11223333322 334577777777776
No 364
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=60.98 E-value=44 Score=27.48 Aligned_cols=26 Identities=23% Similarity=0.469 Sum_probs=24.3
Q ss_pred HHHHHHHHHhCCChhHHHHHHHHHHH
Q 004487 344 WTAMISAYVQKGNLEEALNLFIEMCR 369 (749)
Q Consensus 344 ~~~li~~~~~~g~~~~A~~l~~~m~~ 369 (749)
|..++.-|...|..++|++++.+...
T Consensus 42 ~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 42 YQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred HHHHHHHHHccCccHHHHHHHHHHhc
Confidence 89999999999999999999999877
No 365
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=60.83 E-value=28 Score=26.46 Aligned_cols=44 Identities=16% Similarity=0.184 Sum_probs=20.2
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHhccCCHHHHHH
Q 004487 455 NGDAQATLKSFEDMVQSGYQPDS--VSLLSVLSACSHCGLIEEGLQ 498 (749)
Q Consensus 455 ~g~~~~A~~~~~~m~~~g~~p~~--~t~~~ll~a~~~~g~~~~a~~ 498 (749)
..+.++|+..|....+.-..|.. .++..++.|++..|.+.++++
T Consensus 19 ~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~ 64 (80)
T PF10579_consen 19 QNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLA 64 (80)
T ss_pred cchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555543222211 144445555555555555444
No 366
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=59.10 E-value=1.5e+02 Score=31.05 Aligned_cols=121 Identities=12% Similarity=0.077 Sum_probs=60.1
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHH--HHHHHHHHHh--ccCCHHHHHHHHHHhHHhcCC-CCChHHHHHHHHHHHHc
Q 004487 452 CAQNGDAQATLKSFEDMVQSGYQPDSV--SLLSVLSACS--HCGLIEEGLQYFNSMTQKYKL-RPKKEHYASMVDILCRS 526 (749)
Q Consensus 452 ~~~~g~~~~A~~~~~~m~~~g~~p~~~--t~~~ll~a~~--~~g~~~~a~~~~~~m~~~~~~-~p~~~~~~~li~~~~~~ 526 (749)
+...+++..|.++|+++... ++++.. .+..+..+|. ..-++++|.+.++........ .-....+..++...-..
T Consensus 141 l~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~~~~l~~~~~~l~~~~~~~~~~ 219 (379)
T PF09670_consen 141 LFNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKRDKALNQEREGLKELVEVLKAL 219 (379)
T ss_pred HHhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhhhhHhHHHHHHHHHHHHHHH
Confidence 34678888888888888876 555554 3334444443 355677888888776643110 01122333333322222
Q ss_pred CCHHHHHHHHHhCCCCCC-HHhHHHHHHHHH--hcCCHHHHHHHHHHHhc
Q 004487 527 GCFDEAEKLMAQMPFEPD-EIMWSSVINSCR--IHKNLEFAKKAADQLFK 573 (749)
Q Consensus 527 g~~~~A~~~~~~~~~~p~-~~~~~~ll~~~~--~~g~~~~a~~~~~~~~~ 573 (749)
..+....+....-+-+|. ..+...+.++-+ ..|+++.|...+-++++
T Consensus 220 ~~~~~~~~~~~~~~~~~~~~ll~dLl~NA~RRa~~gryddAvarlYR~lE 269 (379)
T PF09670_consen 220 ESILSALEDKKQRQKKLYYALLADLLANAERRAAQGRYDDAVARLYRALE 269 (379)
T ss_pred HhhccchhhhhccccccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 222222222111111111 223333444443 46788888776666654
No 367
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=59.05 E-value=87 Score=33.75 Aligned_cols=24 Identities=21% Similarity=0.432 Sum_probs=21.1
Q ss_pred HHHHHHHHhcCCHHHHHHHHhhCC
Q 004487 415 SALLDMYAKSGSLKDAIQTFKEMP 438 (749)
Q Consensus 415 ~~li~~y~~~g~~~~A~~~~~~~~ 438 (749)
..|+.-|.+.+++++|..++..|.
T Consensus 412 ~eL~~~yl~~~qi~eAi~lL~smn 435 (545)
T PF11768_consen 412 VELISQYLRCDQIEEAINLLLSMN 435 (545)
T ss_pred HHHHHHHHhcCCHHHHHHHHHhCC
Confidence 357778999999999999999987
No 368
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=57.70 E-value=24 Score=23.36 Aligned_cols=25 Identities=24% Similarity=0.466 Sum_probs=15.5
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCC
Q 004487 448 LISACAQNGDAQATLKSFEDMVQSG 472 (749)
Q Consensus 448 li~~~~~~g~~~~A~~~~~~m~~~g 472 (749)
+..+|...|+.+.|.+++++....|
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl~~~ 29 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVIEEG 29 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHcC
Confidence 4456666666666666666666543
No 369
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=56.98 E-value=16 Score=40.97 Aligned_cols=96 Identities=18% Similarity=0.305 Sum_probs=57.0
Q ss_pred HHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHH
Q 004487 484 LSACSHCGLIEEGLQYFNSMTQKYKLRPKKEHYASMVDILCRSGCFDEAEKLMAQMPFEPDEIMWSSVINSCRIHKNLEF 563 (749)
Q Consensus 484 l~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~ 563 (749)
|.-+.+.|-.+-|+.+.+.=..+ .++...+|+++.|++.-.+.. |..+|..|...-..+||.+.
T Consensus 627 IaYLqKkgypeiAL~FVkD~~tR-------------F~LaLe~gnle~ale~akkld---d~d~w~rLge~Al~qgn~~I 690 (1202)
T KOG0292|consen 627 IAYLQKKGYPEIALHFVKDERTR-------------FELALECGNLEVALEAAKKLD---DKDVWERLGEEALRQGNHQI 690 (1202)
T ss_pred HHHHHhcCCcceeeeeecCcchh-------------eeeehhcCCHHHHHHHHHhcC---cHHHHHHHHHHHHHhcchHH
Confidence 33344556666666555432222 233445777877777776653 56678888777777788888
Q ss_pred HHHHHHHHhcCCCCCCchhHHHHHHHHHHcCCchhHHHHHH
Q 004487 564 AKKAADQLFKMEKLRDAAPYVAMSNIYAVAGQWESVSQVKK 604 (749)
Q Consensus 564 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 604 (749)
|+..|++...-+. |+-+|.-.|+.++-.++.+
T Consensus 691 aEm~yQ~~knfek---------LsfLYliTgn~eKL~Km~~ 722 (1202)
T KOG0292|consen 691 AEMCYQRTKNFEK---------LSFLYLITGNLEKLSKMMK 722 (1202)
T ss_pred HHHHHHHhhhhhh---------eeEEEEEeCCHHHHHHHHH
Confidence 8777776554333 4455555565554444333
No 370
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=56.83 E-value=43 Score=30.26 Aligned_cols=61 Identities=18% Similarity=0.422 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHhccCC-----------HHHHHHHHHHhHHhcCCCCChHHHHHHHHHH
Q 004487 458 AQATLKSFEDMVQSGYQPDSV-SLLSVLSACSHCGL-----------IEEGLQYFNSMTQKYKLRPKKEHYASMVDIL 523 (749)
Q Consensus 458 ~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~g~-----------~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~ 523 (749)
+++|+.-|++.+. +.|+.. ++..+..|+...+. +++|..+|+.... .+|+.+.|..-+++.
T Consensus 51 iedAisK~eeAL~--I~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~---~~P~ne~Y~ksLe~~ 123 (186)
T PF06552_consen 51 IEDAISKFEEALK--INPNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVD---EDPNNELYRKSLEMA 123 (186)
T ss_dssp HHHHHHHHHHHHH--H-TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH---H-TT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHh--cCCchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHh---cCCCcHHHHHHHHHH
Confidence 3455555666666 778764 77777777665432 3344444444432 356666665554444
No 371
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=56.70 E-value=27 Score=23.14 Aligned_cols=24 Identities=33% Similarity=0.555 Sum_probs=14.5
Q ss_pred HHHHHHhCCChhHHHHHHHHHHHC
Q 004487 347 MISAYVQKGNLEEALNLFIEMCRA 370 (749)
Q Consensus 347 li~~~~~~g~~~~A~~l~~~m~~~ 370 (749)
+..+|...|+.+.|.+++++....
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl~~ 28 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVIEE 28 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHc
Confidence 445566666666666666666543
No 372
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=54.43 E-value=38 Score=25.78 Aligned_cols=47 Identities=15% Similarity=0.189 Sum_probs=31.9
Q ss_pred ccCCHHHHHHHHHHhHHhcCCCCCh-HHHHHHHHHHHHcCCHHHHHHH
Q 004487 489 HCGLIEEGLQYFNSMTQKYKLRPKK-EHYASMVDILCRSGCFDEAEKL 535 (749)
Q Consensus 489 ~~g~~~~a~~~~~~m~~~~~~~p~~-~~~~~li~~~~~~g~~~~A~~~ 535 (749)
+...-++|+..|....++..-.|+. .+..+|+.+|+..|++++++++
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~f 65 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAF 65 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6667778888888777653333332 3566777888888888777665
No 373
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=52.11 E-value=2.7e+02 Score=28.18 Aligned_cols=100 Identities=12% Similarity=0.060 Sum_probs=64.3
Q ss_pred cCCHHHHHHHHHHhHHhcCC---CCChHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHH
Q 004487 490 CGLIEEGLQYFNSMTQKYKL---RPKKEHYASMVDILCRSGCFDEAEKLMAQMPFEPDEIMWSSVINSCRIHKNLEFAKK 566 (749)
Q Consensus 490 ~g~~~~a~~~~~~m~~~~~~---~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~ 566 (749)
.+-.+++.+.|+.......- ..++.....+.....+.|..++-..+++.....++...-..++.+.....+.+.-.+
T Consensus 143 ~~~~~~a~~~~~~~~~~~~~~~~~i~~dlr~~v~~~~~~~g~~~~~~~l~~~~~~~~~~~~k~~~l~aLa~~~d~~~~~~ 222 (324)
T PF11838_consen 143 PECVAEARELFKAWLDGNDSPESSIPPDLRWAVYCAGVRNGDEEEWDFLWELYKNSTSPEEKRRLLSALACSPDPELLKR 222 (324)
T ss_dssp HHHHHHHHHHHHHHHHTTT-TTSTS-HHHHHHHHHHHTTS--HHHHHHHHHHHHTTSTHHHHHHHHHHHTT-S-HHHHHH
T ss_pred hhHHHHHHHHHHHHhcCCcccccccchHHHHHHHHHHHHHhhHhhHHHHHHHHhccCCHHHHHHHHHhhhccCCHHHHHH
Confidence 33467888888888763111 345666677777778888876666666655545677778889999888899999999
Q ss_pred HHHHHhcCCCCCCchhHHHHHHH
Q 004487 567 AADQLFKMEKLRDAAPYVAMSNI 589 (749)
Q Consensus 567 ~~~~~~~~~~~~~~~~~~~l~~~ 589 (749)
+++.++.-+...+...+..+..+
T Consensus 223 ~l~~~l~~~~v~~~d~~~~~~~~ 245 (324)
T PF11838_consen 223 LLDLLLSNDKVRSQDIRYVLAGL 245 (324)
T ss_dssp HHHHHHCTSTS-TTTHHHHHHHH
T ss_pred HHHHHcCCcccccHHHHHHHHHH
Confidence 99999985422444444444444
No 374
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=51.86 E-value=2.9e+02 Score=28.64 Aligned_cols=65 Identities=12% Similarity=0.125 Sum_probs=50.8
Q ss_pred CHHhHHHH---HHHHHhcCCHHHHHHHHHHHhcCCCCCCchhHHHHHHHHH-HcCCchhHHHHHHHHHh
Q 004487 544 DEIMWSSV---INSCRIHKNLEFAKKAADQLFKMEKLRDAAPYVAMSNIYA-VAGQWESVSQVKKAMRE 608 (749)
Q Consensus 544 ~~~~~~~l---l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~a~~~~~~m~~ 608 (749)
|...|.+| +....+.|.+..|.+..+-++.++|..|+......++.|+ +++.++--.++.+....
T Consensus 99 NR~fflal~r~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~ 167 (360)
T PF04910_consen 99 NRQFFLALFRYIQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLA 167 (360)
T ss_pred chHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhh
Confidence 44555555 4467889999999999999999999558888888888885 66778777777776544
No 375
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=51.74 E-value=2.4e+02 Score=27.60 Aligned_cols=51 Identities=10% Similarity=0.168 Sum_probs=33.9
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHH-------HHHHHHHHhccCCHHHHHHHH
Q 004487 450 SACAQNGDAQATLKSFEDMVQSGYQPDSVS-------LLSVLSACSHCGLIEEGLQYF 500 (749)
Q Consensus 450 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t-------~~~ll~a~~~~g~~~~a~~~~ 500 (749)
+-..+.+++++|+..+.+....|+..|..+ ...+...|...|+...-.+..
T Consensus 11 ~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i 68 (421)
T COG5159 11 NNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTI 68 (421)
T ss_pred HHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHH
Confidence 334567788899999999888887776543 444555666666655544433
No 376
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=51.55 E-value=40 Score=26.83 Aligned_cols=54 Identities=15% Similarity=0.146 Sum_probs=38.2
Q ss_pred HHhcCCHHHHHHHHHHHhcCCCCCC--------chhHHHHHHHHHHcCCchhHHHHHHHHHh
Q 004487 555 CRIHKNLEFAKKAADQLFKMEKLRD--------AAPYVAMSNIYAVAGQWESVSQVKKAMRE 608 (749)
Q Consensus 555 ~~~~g~~~~a~~~~~~~~~~~~~~~--------~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 608 (749)
..+.||+..|.+.+.+.++.....+ ..+...++.++...|++++|.+.+++..+
T Consensus 8 ~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~ 69 (94)
T PF12862_consen 8 ALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIR 69 (94)
T ss_pred HHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 3456788888777777766443111 23445678889999999999999988754
No 377
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=51.39 E-value=4.1e+02 Score=30.04 Aligned_cols=57 Identities=11% Similarity=0.276 Sum_probs=34.5
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhcCCCCC---CchhHH-----HHHHHHHHcCCchhHHHHHHHHH
Q 004487 551 VINSCRIHKNLEFAKKAADQLFKMEKLR---DAAPYV-----AMSNIYAVAGQWESVSQVKKAMR 607 (749)
Q Consensus 551 ll~~~~~~g~~~~a~~~~~~~~~~~~~~---~~~~~~-----~l~~~~~~~g~~~~a~~~~~~m~ 607 (749)
+++.-.-.|++.+..........+..+. ....|. .+.+.|...|+.++|.....+..
T Consensus 540 lm~~~lf~~~~~e~~~~s~~a~~~A~k~~d~~~~LW~~v~~~~l~~~~~~~G~~~ka~~~~~~~~ 604 (608)
T PF10345_consen 540 LMGHRLFEGDVGEQAKKSARAFQLAKKSSDYSDQLWHLVASGMLADSYEVQGDRDKAEEARQQLD 604 (608)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHH
Confidence 4443333677777666666565544322 334442 45556778899999988887654
No 378
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=51.29 E-value=1.3e+02 Score=24.49 Aligned_cols=80 Identities=14% Similarity=-0.017 Sum_probs=52.4
Q ss_pred CChHHHHHHHHHHHHhCCCCchhHHHHHHHHhHcCCChhHHHHHHccCCCCCcchHHHHHHHHHhCCChhHHHHHHHHHH
Q 004487 87 DTANELIQVHADIIKFGYNSILIICNSLVDSYCKIRCLDLARRVFKEMPQKDSVSFNALITGFAKEGLNEEAIKLFVEMQ 166 (749)
Q Consensus 87 ~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 166 (749)
...++|..|.+.+...+- ....+.-.-+..+...|++++|...=.....||...|-+|-. .+.|-.+++...+.++-
T Consensus 20 HcH~EA~tIa~wL~~~~~-~~E~v~lIr~~sLmNrG~Yq~ALl~~~~~~~pdL~p~~AL~a--~klGL~~~~e~~l~rla 96 (116)
T PF09477_consen 20 HCHQEANTIADWLEQEGE-MEEVVALIRLSSLMNRGDYQEALLLPQCHCYPDLEPWAALCA--WKLGLASALESRLTRLA 96 (116)
T ss_dssp T-HHHHHHHHHHHHHTTT-THHHHHHHHHHHHHHTT-HHHHHHHHTTS--GGGHHHHHHHH--HHCT-HHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHhhHHHHHHHHhcccCCCccHHHHHHHHH--HhhccHHHHHHHHHHHH
Confidence 356777888887777664 233333334455677899999977767777899999987654 56788888888888776
Q ss_pred HCC
Q 004487 167 HLG 169 (749)
Q Consensus 167 ~~g 169 (749)
..|
T Consensus 97 ~~g 99 (116)
T PF09477_consen 97 SSG 99 (116)
T ss_dssp T-S
T ss_pred hCC
Confidence 655
No 379
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=50.76 E-value=1.9e+02 Score=27.59 Aligned_cols=81 Identities=9% Similarity=0.045 Sum_probs=41.2
Q ss_pred HHhcCCHHHHHHHHhhCC--CCCcc-hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH-HHHHHHHHhccCCHHHH
Q 004487 421 YAKSGSLKDAIQTFKEMP--ERNIV-SWNALISACAQNGDAQATLKSFEDMVQSGYQPDSVS-LLSVLSACSHCGLIEEG 496 (749)
Q Consensus 421 y~~~g~~~~A~~~~~~~~--~~~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t-~~~ll~a~~~~g~~~~a 496 (749)
|.....++.|...+.+.. .|++. -|+.-+..+.+..+++.+.+=-.+.++ +.||.+- ...+..+......+++|
T Consensus 20 ~f~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralq--l~~N~vk~h~flg~~~l~s~~~~ea 97 (284)
T KOG4642|consen 20 CFIPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQ--LDPNLVKAHYFLGQWLLQSKGYDEA 97 (284)
T ss_pred ccchhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHh--cChHHHHHHHHHHHHHHhhccccHH
Confidence 333445556665555443 34442 344455555666666666655555555 5566552 22233334445555555
Q ss_pred HHHHHHh
Q 004487 497 LQYFNSM 503 (749)
Q Consensus 497 ~~~~~~m 503 (749)
+..+++.
T Consensus 98 I~~Lqra 104 (284)
T KOG4642|consen 98 IKVLQRA 104 (284)
T ss_pred HHHHHHH
Confidence 5555544
No 380
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=50.64 E-value=2.6e+02 Score=27.61 Aligned_cols=56 Identities=16% Similarity=0.102 Sum_probs=44.6
Q ss_pred HHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHhHHHHHHHHHhcCCHHHHHHHHHHHh
Q 004487 517 ASMVDILCRSGCFDEAEKLMAQM-PFEP-DEIMWSSVINSCRIHKNLEFAKKAADQLF 572 (749)
Q Consensus 517 ~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 572 (749)
+.....|..+|.+.+|.++.++. ...| +...|..|+..+...||--.+...++++-
T Consensus 283 gkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyerya 340 (361)
T COG3947 283 GKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERYA 340 (361)
T ss_pred HHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHHH
Confidence 34456788999999999999988 5555 68888999999999998777777766653
No 381
>KOG0403 consensus Neoplastic transformation suppressor Pdcd4/MA-3, contains MA3 domain [Signal transduction mechanisms]
Probab=49.57 E-value=3.4e+02 Score=28.57 Aligned_cols=57 Identities=23% Similarity=0.296 Sum_probs=34.4
Q ss_pred HHHHHHHhcCCHHHHHHHHHhcCCC---CcccHHHHHHHHHhCCChhHHHHHHHHHHHCC
Q 004487 315 SLVDMYAKCGRFEEAKEIFANLSHI---STVPWTAMISAYVQKGNLEEALNLFIEMCRAN 371 (749)
Q Consensus 315 ~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g 371 (749)
.|+.-|...|++.+|...++++.-| ..+.+-+++.+.-+.|+....+.++++.-..|
T Consensus 514 ~LLeEY~~~GdisEA~~CikeLgmPfFhHEvVkkAlVm~mEkk~d~t~~ldLLk~cf~sg 573 (645)
T KOG0403|consen 514 MLLEEYELSGDISEACHCIKELGMPFFHHEVVKKALVMVMEKKGDSTMILDLLKECFKSG 573 (645)
T ss_pred HHHHHHHhccchHHHHHHHHHhCCCcchHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcC
Confidence 4555566667777777666665432 23346666666666666666666666665554
No 382
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=49.48 E-value=2.7e+02 Score=27.37 Aligned_cols=92 Identities=8% Similarity=0.051 Sum_probs=48.4
Q ss_pred HHHHHHhccCCHHHHHHHHHHhHH---hcCCCCChHHHH-HHHHHHHHcCCHHHHHHHHHhCC-------CCCCHHhHHH
Q 004487 482 SVLSACSHCGLIEEGLQYFNSMTQ---KYKLRPKKEHYA-SMVDILCRSGCFDEAEKLMAQMP-------FEPDEIMWSS 550 (749)
Q Consensus 482 ~ll~a~~~~g~~~~a~~~~~~m~~---~~~~~p~~~~~~-~li~~~~~~g~~~~A~~~~~~~~-------~~p~~~~~~~ 550 (749)
-++.++.+.|.+.+|+.+.+.+.. ++.-+|+..+.. -=-..|....++.++..-+.... .+|....---
T Consensus 130 Kli~l~y~~~~YsdalalIn~ll~ElKk~DDK~~Li~vhllESKvyh~irnv~KskaSLTaArt~Ans~YCPpqlqa~lD 209 (421)
T COG5159 130 KLIYLLYKTGKYSDALALINPLLHELKKYDDKINLITVHLLESKVYHEIRNVSKSKASLTAARTLANSAYCPPQLQAQLD 209 (421)
T ss_pred HHHHHHHhcccHHHHHHHHHHHHHHHHhhcCccceeehhhhhHHHHHHHHhhhhhhhHHHHHHHHhhccCCCHHHHHHHH
Confidence 356677788888888877665543 234444433222 12344555555666655555551 1222222223
Q ss_pred HHHHH--HhcCCHHHHHHHHHHHhc
Q 004487 551 VINSC--RIHKNLEFAKKAADQLFK 573 (749)
Q Consensus 551 ll~~~--~~~g~~~~a~~~~~~~~~ 573 (749)
|+++- +...|+.-|...|-++++
T Consensus 210 L~sGIlhcdd~dyktA~SYF~Ea~E 234 (421)
T COG5159 210 LLSGILHCDDRDYKTASSYFIEALE 234 (421)
T ss_pred HhccceeeccccchhHHHHHHHHHh
Confidence 34432 334566677766666655
No 383
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=49.19 E-value=63 Score=29.90 Aligned_cols=29 Identities=28% Similarity=0.346 Sum_probs=11.8
Q ss_pred CCChHHHHHHHHHHHHcCCHHHHHHHHHh
Q 004487 510 RPKKEHYASMVDILCRSGCFDEAEKLMAQ 538 (749)
Q Consensus 510 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 538 (749)
.|++..|..++.++...|+.++|.+..++
T Consensus 141 ~P~~~~~~~~a~~l~~~G~~~eA~~~~~~ 169 (193)
T PF11846_consen 141 RPDPNVYQRYALALALLGDPEEARQWLAR 169 (193)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 34444444444444444444444443333
No 384
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=47.73 E-value=1.3e+02 Score=25.40 Aligned_cols=71 Identities=14% Similarity=0.314 Sum_probs=51.8
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHhC
Q 004487 460 ATLKSFEDMVQSGYQPDSVSLLSVLSACSHCGLIEEGLQYFNSMTQKYKLRPKKEHYASMVDILCRSGCFDEAEKLMAQM 539 (749)
Q Consensus 460 ~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~ 539 (749)
+..+-++......+.|+......-|.||-+.+++..|.++|+.++.+ ..+....|..+++ +-..+++++
T Consensus 67 EvrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K--~g~~k~~Y~y~v~---------elkpvl~EL 135 (149)
T KOG4077|consen 67 EVRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDK--CGAQKQVYPYYVK---------ELKPVLNEL 135 (149)
T ss_pred HHHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHh--cccHHHHHHHHHH---------HHHHHHHHh
Confidence 34455566666778999999999999999999999999999988754 4454456766653 445556666
Q ss_pred CC
Q 004487 540 PF 541 (749)
Q Consensus 540 ~~ 541 (749)
++
T Consensus 136 GI 137 (149)
T KOG4077|consen 136 GI 137 (149)
T ss_pred CC
Confidence 43
No 385
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=47.05 E-value=60 Score=30.08 Aligned_cols=37 Identities=11% Similarity=0.050 Sum_probs=31.5
Q ss_pred CCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHhcCCC
Q 004487 540 PFEPDEIMWSSVINSCRIHKNLEFAKKAADQLFKMEK 576 (749)
Q Consensus 540 ~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~ 576 (749)
...|++.++..++.++...|+.++|.+..+++..+-|
T Consensus 139 ~~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP 175 (193)
T PF11846_consen 139 RRRPDPNVYQRYALALALLGDPEEARQWLARARRLYP 175 (193)
T ss_pred HhCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 4568888888888888888999999888888888887
No 386
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=46.55 E-value=35 Score=19.96 Aligned_cols=29 Identities=10% Similarity=0.211 Sum_probs=19.9
Q ss_pred CCHHHHHHHHHHHhcCCCCCCchhHHHHHH
Q 004487 559 KNLEFAKKAADQLFKMEKLRDAAPYVAMSN 588 (749)
Q Consensus 559 g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 588 (749)
|+.+.+..+|++++...| .+...+...+.
T Consensus 1 ~~~~~~r~i~e~~l~~~~-~~~~~W~~y~~ 29 (33)
T smart00386 1 GDIERARKIYERALEKFP-KSVELWLKYAE 29 (33)
T ss_pred CcHHHHHHHHHHHHHHCC-CChHHHHHHHH
Confidence 456777788888887777 66666655543
No 387
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=46.39 E-value=5.9e+02 Score=30.46 Aligned_cols=61 Identities=11% Similarity=0.024 Sum_probs=26.7
Q ss_pred CChHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHh
Q 004487 511 PKKEHYASMVDILCRSGCFDEAEKLMAQMPFEPDEIMWSSVINSCRIHKNLEFAKKAADQLF 572 (749)
Q Consensus 511 p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 572 (749)
++...-.+.+.++++.|..+.+...+..+-..+|..+-...+.++...+. +++...+..++
T Consensus 787 ~d~~VR~aA~~aLg~~g~~~~~~~~l~~aL~d~d~~VR~~Aa~aL~~l~~-~~a~~~L~~~L 847 (897)
T PRK13800 787 PDPLVRAAALAALAELGCPPDDVAAATAALRASAWQVRQGAARALAGAAA-DVAVPALVEAL 847 (897)
T ss_pred CCHHHHHHHHHHHHhcCCcchhHHHHHHHhcCCChHHHHHHHHHHHhccc-cchHHHHHHHh
Confidence 44555555555566555544332323222223444444444445544443 23334433333
No 388
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=46.07 E-value=1.4e+02 Score=23.30 Aligned_cols=39 Identities=10% Similarity=0.126 Sum_probs=29.1
Q ss_pred hcCCHHHHHHHHhhCCCCCcchHHHHHHHHHhcCCHHHHH
Q 004487 423 KSGSLKDAIQTFKEMPERNIVSWNALISACAQNGDAQATL 462 (749)
Q Consensus 423 ~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 462 (749)
..|+.+.|.+++..++ +....|...++++...|+.+-|.
T Consensus 48 ~~g~~~~ar~LL~~L~-rg~~aF~~Fl~aLreT~~~~LA~ 86 (88)
T cd08819 48 NHGNESGARELLKRIV-QKEGWFSKFLQALRETEHHELAR 86 (88)
T ss_pred ccCcHHHHHHHHHHhc-cCCcHHHHHHHHHHHcCchhhhh
Confidence 4577788888888887 77777888888887777765553
No 389
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=45.75 E-value=1.3e+02 Score=24.65 Aligned_cols=28 Identities=18% Similarity=0.323 Sum_probs=24.9
Q ss_pred chHHHHHHHHHhcCChhHHHHHHHHHHH
Q 004487 241 VSYNVMITCYAWNEQYKESLKLFRELQF 268 (749)
Q Consensus 241 ~~~~~li~~~~~~g~~~~A~~~~~~m~~ 268 (749)
.-|..++.-|...|..++|++++.++..
T Consensus 40 ~~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 40 GKYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CCHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 3588999999999999999999999876
No 390
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=44.89 E-value=1.9e+02 Score=26.72 Aligned_cols=23 Identities=9% Similarity=0.104 Sum_probs=18.7
Q ss_pred HHHhcCCHHHHHHHHHHHhcCCC
Q 004487 554 SCRIHKNLEFAKKAADQLFKMEK 576 (749)
Q Consensus 554 ~~~~~g~~~~a~~~~~~~~~~~~ 576 (749)
+|.+...++.|+.-|+++++.+|
T Consensus 177 ayek~ek~eealeDyKki~E~dP 199 (271)
T KOG4234|consen 177 AYEKMEKYEEALEDYKKILESDP 199 (271)
T ss_pred HHHhhhhHHHHHHHHHHHHHhCc
Confidence 45666778888888999999888
No 391
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=44.74 E-value=4.3e+02 Score=28.44 Aligned_cols=156 Identities=16% Similarity=0.161 Sum_probs=94.6
Q ss_pred cHHHHHHHHHhCCChhHHHHHHHHHHHCCCCcCHHhHHHHHHHhcccCcHHHHHHHHHHHHHhCCCCchhHHHHHHHHHH
Q 004487 343 PWTAMISAYVQKGNLEEALNLFIEMCRANISADQATFASILRASAELASLSLGKQLHSFVIRSGFMSNVFSGSALLDMYA 422 (749)
Q Consensus 343 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~ 422 (749)
..-+++..+.++..+.-...+..+|..-| -+...|..++..|... ..+.-..+++.+.+..+. |+....-|++.|-
T Consensus 68 ~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfn-Dvv~~ReLa~~yE 143 (711)
T COG1747 68 CLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFN-DVVIGRELADKYE 143 (711)
T ss_pred HHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcch-hHHHHHHHHHHHH
Confidence 35566777777777777777777777643 4666777777777766 445556677777776654 4555666777777
Q ss_pred hcCCHHHHHHHHhhCCCCCc---------chHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHhccCC
Q 004487 423 KSGSLKDAIQTFKEMPERNI---------VSWNALISACAQNGDAQATLKSFEDMVQS-GYQPDSVSLLSVLSACSHCGL 492 (749)
Q Consensus 423 ~~g~~~~A~~~~~~~~~~~~---------~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~p~~~t~~~ll~a~~~~g~ 492 (749)
+ ++.+.+...|.++..+-+ ..|.-++.. -..+.+..+.+..+.+.. |..--.+.+.-+-.-|+...+
T Consensus 144 k-ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~--i~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys~~eN 220 (711)
T COG1747 144 K-IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPEL--IGDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYSENEN 220 (711)
T ss_pred H-hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHh--ccccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhccccC
Confidence 6 777788777776542111 144444431 123455555555555432 333334455555556667777
Q ss_pred HHHHHHHHHHhHH
Q 004487 493 IEEGLQYFNSMTQ 505 (749)
Q Consensus 493 ~~~a~~~~~~m~~ 505 (749)
+++|++++..+.+
T Consensus 221 ~~eai~Ilk~il~ 233 (711)
T COG1747 221 WTEAIRILKHILE 233 (711)
T ss_pred HHHHHHHHHHHhh
Confidence 7777777766553
No 392
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=44.69 E-value=5.6e+02 Score=29.74 Aligned_cols=219 Identities=15% Similarity=0.096 Sum_probs=112.8
Q ss_pred HHhcCCHHHHHHHHHhcC----CCCcc-------cHHHHHHH-HHhCCChhHHHHHHHHHHHC----CCCcCHHhHHHHH
Q 004487 320 YAKCGRFEEAKEIFANLS----HISTV-------PWTAMISA-YVQKGNLEEALNLFIEMCRA----NISADQATFASIL 383 (749)
Q Consensus 320 ~~~~g~~~~A~~~~~~~~----~~~~~-------~~~~li~~-~~~~g~~~~A~~l~~~m~~~----g~~p~~~t~~~ll 383 (749)
.....++++|..+..+.. .++.. .|+++-.. ....|++++|.++-+..... -..+..+.+..+.
T Consensus 425 ~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~ 504 (894)
T COG2909 425 LASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLG 504 (894)
T ss_pred HHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhh
Confidence 345677888877776653 22222 26655433 34567888888887776553 1233445555666
Q ss_pred HHhcccCcHHHHHHHHHHHHHhCCCCchhHHHHHH-----HHHHhcCCHHHH--HHHHhhCC-----CCCc-----chHH
Q 004487 384 RASAELASLSLGKQLHSFVIRSGFMSNVFSGSALL-----DMYAKSGSLKDA--IQTFKEMP-----ERNI-----VSWN 446 (749)
Q Consensus 384 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li-----~~y~~~g~~~~A--~~~~~~~~-----~~~~-----~~~~ 446 (749)
.+..-.|+++.|..+.....+..-..+...+.... ..+...|+...| ...|.... +... -.+.
T Consensus 505 ~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~ 584 (894)
T COG2909 505 EAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRA 584 (894)
T ss_pred HHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHH
Confidence 66677788888888776665543333333332222 234455633322 33333222 1112 2333
Q ss_pred HHHHHHHhc-CCHHHHHHHHHHHHHCCCCCCHHHH--HHHHHHHhccCCHHHHHHHHHHhHHhcCCCCC-hHHHH---HH
Q 004487 447 ALISACAQN-GDAQATLKSFEDMVQSGYQPDSVSL--LSVLSACSHCGLIEEGLQYFNSMTQKYKLRPK-KEHYA---SM 519 (749)
Q Consensus 447 ~li~~~~~~-g~~~~A~~~~~~m~~~g~~p~~~t~--~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~---~l 519 (749)
.+..++.+. +...++..-++--......|-.... ..|.......|++++|...++++..-. ..++ ..-|. +.
T Consensus 585 ~ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~-~~~~~~~~~~a~~~~ 663 (894)
T COG2909 585 QLLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLL-LNGQYHVDYLAAAYK 663 (894)
T ss_pred HHHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHh-cCCCCCchHHHHHHH
Confidence 444444441 2222333333333332222222222 256667778999999999988887542 2221 11122 22
Q ss_pred HH--HHHHcCCHHHHHHHHHhC
Q 004487 520 VD--ILCRSGCFDEAEKLMAQM 539 (749)
Q Consensus 520 i~--~~~~~g~~~~A~~~~~~~ 539 (749)
+. .....|+.++|.....+-
T Consensus 664 v~~~lwl~qg~~~~a~~~l~~s 685 (894)
T COG2909 664 VKLILWLAQGDKELAAEWLLKS 685 (894)
T ss_pred hhHHHhcccCCHHHHHHHHHhc
Confidence 22 234678888777776663
No 393
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=44.62 E-value=1e+02 Score=26.01 Aligned_cols=48 Identities=10% Similarity=0.179 Sum_probs=37.2
Q ss_pred hCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCchhHHHH
Q 004487 538 QMPFEPDEIMWSSVINSCRIHKNLEFAKKAADQLFKMEKLRDAAPYVAM 586 (749)
Q Consensus 538 ~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 586 (749)
.+.+.|++.+....+.+|++-+|+..|.++++-+...-+ +....|-.+
T Consensus 77 ~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K~g-~~k~~Y~y~ 124 (149)
T KOG4077|consen 77 DYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDKCG-AQKQVYPYY 124 (149)
T ss_pred ccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHhcc-cHHHHHHHH
Confidence 346779999999999999999999999999999876555 333344433
No 394
>KOG4521 consensus Nuclear pore complex, Nup160 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=44.20 E-value=5.2e+02 Score=31.03 Aligned_cols=20 Identities=20% Similarity=0.283 Sum_probs=15.4
Q ss_pred HHHHhcCCHHHHHHHHhhCC
Q 004487 419 DMYAKSGSLKDAIQTFKEMP 438 (749)
Q Consensus 419 ~~y~~~g~~~~A~~~~~~~~ 438 (749)
-+|..+|+.-+|...|.+..
T Consensus 928 ~~yl~tge~~kAl~cF~~a~ 947 (1480)
T KOG4521|consen 928 IAYLGTGEPVKALNCFQSAL 947 (1480)
T ss_pred eeeecCCchHHHHHHHHHHh
Confidence 34778888888888887764
No 395
>PF08225 Antimicrobial19: Pseudin antimicrobial peptide; InterPro: IPR013156 Pseudins are a subfamily of the FSAP family (Frog Secreted Active Peptides) extracted from the skin of the paradoxical frog Pseudis paradoxa (Paradoxical frog). The pseudins belong to the class of cationic, amphipathic-helical antimicrobial peptides [].; GO: 0006952 defense response
Probab=43.90 E-value=13 Score=19.56 Aligned_cols=12 Identities=42% Similarity=0.600 Sum_probs=9.4
Q ss_pred cchhHHHHHhhh
Q 004487 710 TDCHAAIKLISK 721 (749)
Q Consensus 710 ~~~h~~~~~~s~ 721 (749)
...|+++|+||.
T Consensus 10 qglhe~ikli~n 21 (23)
T PF08225_consen 10 QGLHEVIKLINN 21 (23)
T ss_pred HHHHHHHHHHhc
Confidence 457999999874
No 396
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=43.81 E-value=1.5e+02 Score=28.42 Aligned_cols=54 Identities=6% Similarity=-0.027 Sum_probs=45.6
Q ss_pred HHhcCCHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHcCCchhHHHHHHHHHhC
Q 004487 555 CRIHKNLEFAKKAADQLFKMEKLRDAAPYVAMSNIYAVAGQWESVSQVKKAMRER 609 (749)
Q Consensus 555 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 609 (749)
+...|++-++++....++...| .|..+|..-+.+.+..=+.++|..-+....+.
T Consensus 240 ~L~~~e~yevleh~seiL~~~~-~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~l 293 (329)
T KOG0545|consen 240 LLKKEEYYEVLEHCSEILRHHP-GNVKAYFRRAKAHAAVWNEAEAKADLQKVLEL 293 (329)
T ss_pred HhhHHHHHHHHHHHHHHHhcCC-chHHHHHHHHHHHHhhcCHHHHHHHHHHHHhc
Confidence 3567889999999999999999 99999999999988888888888877776543
No 397
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=43.60 E-value=72 Score=30.30 Aligned_cols=68 Identities=6% Similarity=0.032 Sum_probs=43.4
Q ss_pred CCCCCHHhH-HHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHcCCchhHHHHHHHHHh
Q 004487 540 PFEPDEIMW-SSVINSCRIHKNLEFAKKAADQLFKMEKLRDAAPYVAMSNIYAVAGQWESVSQVKKAMRE 608 (749)
Q Consensus 540 ~~~p~~~~~-~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 608 (749)
-+.|+..+| ..=+-.+.+..+++.+..-..+++++.| +.......|+........+++|..++.+..+
T Consensus 38 ~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~-N~vk~h~flg~~~l~s~~~~eaI~~Lqra~s 106 (284)
T KOG4642|consen 38 CINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDP-NLVKAHYFLGQWLLQSKGYDEAIKVLQRAYS 106 (284)
T ss_pred hcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcCh-HHHHHHHHHHHHHHhhccccHHHHHHHHHHH
Confidence 345554333 3333334556667777777777777777 6666677777777777777777777776644
No 398
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=43.40 E-value=1.1e+02 Score=33.21 Aligned_cols=98 Identities=18% Similarity=0.187 Sum_probs=63.5
Q ss_pred cCCHHHHHHHHHHhHHhcCCCCCh--HHHHHHHHHHHHcCCHHHHHHHHHhC-CC-CCCHHhHHHHHHHHHhcCCHHHHH
Q 004487 490 CGLIEEGLQYFNSMTQKYKLRPKK--EHYASMVDILCRSGCFDEAEKLMAQM-PF-EPDEIMWSSVINSCRIHKNLEFAK 565 (749)
Q Consensus 490 ~g~~~~a~~~~~~m~~~~~~~p~~--~~~~~li~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~ll~~~~~~g~~~~a~ 565 (749)
.|+...|...+.... ...|-. .....|...+.+.|...+|-.++.+. .+ ...+.++-++.+++....|++.|+
T Consensus 620 ~gn~~~a~~cl~~a~---~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i~~a~ 696 (886)
T KOG4507|consen 620 VGNSTFAIACLQRAL---NLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNISGAL 696 (886)
T ss_pred cCCcHHHHHHHHHHh---ccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhhHHHH
Confidence 566666766665544 333421 12334556667777777787777654 22 223456667777888888888888
Q ss_pred HHHHHHhcCCCCCCchhHHHHHHHHH
Q 004487 566 KAADQLFKMEKLRDAAPYVAMSNIYA 591 (749)
Q Consensus 566 ~~~~~~~~~~~~~~~~~~~~l~~~~~ 591 (749)
+.++.+++++| .++..-..|..+-+
T Consensus 697 ~~~~~a~~~~~-~~~~~~~~l~~i~c 721 (886)
T KOG4507|consen 697 EAFRQALKLTT-KCPECENSLKLIRC 721 (886)
T ss_pred HHHHHHHhcCC-CChhhHHHHHHHHH
Confidence 88888888888 77777666655444
No 399
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=42.62 E-value=81 Score=21.33 Aligned_cols=34 Identities=26% Similarity=0.325 Sum_probs=24.3
Q ss_pred HHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHH
Q 004487 149 FAKEGLNEEAIKLFVEMQHLGFKPSDFTFAAALS 182 (749)
Q Consensus 149 ~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~ 182 (749)
..+.|-..++..++++|.+.|+..+...|..+++
T Consensus 12 Ak~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L~ 45 (48)
T PF11848_consen 12 AKRRGLISEVKPLLDRLQQAGFRISPKLIEEILR 45 (48)
T ss_pred HHHcCChhhHHHHHHHHHHcCcccCHHHHHHHHH
Confidence 3456777777788888888887777777666654
No 400
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=41.75 E-value=51 Score=32.56 Aligned_cols=41 Identities=20% Similarity=0.372 Sum_probs=33.3
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 004487 444 SWNALISACAQNGDAQATLKSFEDMVQSGYQPDSVSLLSVL 484 (749)
Q Consensus 444 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll 484 (749)
-||..|....+.||+++|+.+++|.++.|+.--..||...+
T Consensus 259 Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tFik~V 299 (303)
T PRK10564 259 YFNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTFISSV 299 (303)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHHHHHh
Confidence 46788999999999999999999999999776666665443
No 401
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=41.54 E-value=1e+02 Score=20.80 Aligned_cols=33 Identities=12% Similarity=0.233 Sum_probs=23.0
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 004487 453 AQNGDAQATLKSFEDMVQSGYQPDSVSLLSVLS 485 (749)
Q Consensus 453 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~ 485 (749)
.+.|-.+++..++++|.+.|+..+...+..++.
T Consensus 13 k~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L~ 45 (48)
T PF11848_consen 13 KRRGLISEVKPLLDRLQQAGFRISPKLIEEILR 45 (48)
T ss_pred HHcCChhhHHHHHHHHHHcCcccCHHHHHHHHH
Confidence 456667777777777777777777666666554
No 402
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=41.50 E-value=2e+02 Score=28.22 Aligned_cols=86 Identities=13% Similarity=0.079 Sum_probs=47.4
Q ss_pred HHHHHHhCCChhHHHHHHHHHHHC--CCCCChhhHHHHHHHHhCCCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHc-
Q 004487 145 LITGFAKEGLNEEAIKLFVEMQHL--GFKPSDFTFAAALSAGVGLADIALGRQVHAFVVKTNFVENVFVANALLDLYSK- 221 (749)
Q Consensus 145 li~~~~~~g~~~~A~~l~~~m~~~--g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~- 221 (749)
=|++++..+++.+++...-+.-+. .++|...-..++ -|++.++.....++-...++..-..+..-|.+++..|..
T Consensus 89 GIQALAEmnrWreVLsWvlqyYq~pEklPpkIleLCIL--LysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~ 166 (309)
T PF07163_consen 89 GIQALAEMNRWREVLSWVLQYYQVPEKLPPKILELCIL--LYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLH 166 (309)
T ss_pred hHHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHHHH--HHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHH
Confidence 367888888888887765444332 233333222222 345666666666666665554333333446666655543
Q ss_pred ----CCChHHHHHHH
Q 004487 222 ----HDCVVEARKLF 232 (749)
Q Consensus 222 ----~g~~~~A~~~f 232 (749)
.|.+++|+++.
T Consensus 167 VLlPLG~~~eAeelv 181 (309)
T PF07163_consen 167 VLLPLGHFSEAEELV 181 (309)
T ss_pred HHhccccHHHHHHHH
Confidence 46666666654
No 403
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=40.94 E-value=2.4e+02 Score=27.70 Aligned_cols=20 Identities=20% Similarity=0.255 Sum_probs=13.0
Q ss_pred HHHHHhcCChhHHHHHHHHH
Q 004487 247 ITCYAWNEQYKESLKLFREL 266 (749)
Q Consensus 247 i~~~~~~g~~~~A~~~~~~m 266 (749)
|.+++..++|.+++...-+-
T Consensus 90 IQALAEmnrWreVLsWvlqy 109 (309)
T PF07163_consen 90 IQALAEMNRWREVLSWVLQY 109 (309)
T ss_pred HHHHHHHhhHHHHHHHHHHH
Confidence 56777777777776655443
No 404
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=40.79 E-value=3.6e+02 Score=27.00 Aligned_cols=54 Identities=13% Similarity=0.102 Sum_probs=32.8
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH---HHHHHHHHHhccCCHHHHHHHHHHh
Q 004487 448 LISACAQNGDAQATLKSFEDMVQSGYQPDSV---SLLSVLSACSHCGLIEEGLQYFNSM 503 (749)
Q Consensus 448 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~---t~~~ll~a~~~~g~~~~a~~~~~~m 503 (749)
|..+-.+.|+..+|.+.|+.+.+. .|=.. ....|+.+|.....+.+...++.+.
T Consensus 281 LAMCARklGrlrEA~K~~RDL~ke--~pl~t~lniheNLiEalLE~QAYADvqavLakY 337 (556)
T KOG3807|consen 281 LAMCARKLGRLREAVKIMRDLMKE--FPLLTMLNIHENLLEALLELQAYADVQAVLAKY 337 (556)
T ss_pred HHHHHHHhhhHHHHHHHHHHHhhh--ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 334445678888888888887663 23111 3345677777766666666555443
No 405
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=40.72 E-value=3.1e+02 Score=29.89 Aligned_cols=53 Identities=15% Similarity=0.162 Sum_probs=32.5
Q ss_pred HHHhcCCHHHHHHHHHHHhcCCCCCCchhHHHHHHHHH-HcCCchhHHHHHHHH
Q 004487 554 SCRIHKNLEFAKKAADQLFKMEKLRDAAPYVAMSNIYA-VAGQWESVSQVKKAM 606 (749)
Q Consensus 554 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~a~~~~~~m 606 (749)
...+.|.+..|.+..+-+++++|..|+.....+++.|+ ++.++.=-+++.+..
T Consensus 351 ~l~~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~ALrareYqwiI~~~~~~ 404 (665)
T KOG2422|consen 351 SLAQRGCWRTALEWCKLLLSLDPSEDPLGILYLIDIYALRAREYQWIIELSNEP 404 (665)
T ss_pred HHHhcCChHHHHHHHHHHhhcCCcCCchhHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 34556667777777777777777446666666666664 444555555555544
No 406
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=40.46 E-value=6e+02 Score=28.85 Aligned_cols=153 Identities=14% Similarity=0.166 Sum_probs=71.5
Q ss_pred HHHHcCCChhHHHHHHHHhHhcCCCCCCcchHHHHHHhcCCC------------C----ChHHHHHHHHHHHHhCCCCch
Q 004487 45 GGYSQKNQFREAFKLFVDMRTDGGSDPDYVTFATLLSGCSEP------------D----TANELIQVHADIIKFGYNSIL 108 (749)
Q Consensus 45 ~~~~~~g~~~~a~~l~~~m~~~~g~~p~~~~~~~ll~~~~~~------------~----~~~~a~~~~~~~~~~g~~~~~ 108 (749)
..|.--|.+++|+++--.......+.++...+.+++.-|... + =-+....+.+.|+...+.-+
T Consensus 67 KVyy~Lgeye~Al~yAL~ag~~F~Vd~~S~y~etivak~id~yi~~~~~~~~~~~~~~~iD~rL~~iv~rmi~kcl~d~- 145 (929)
T KOG2062|consen 67 KVYYYLGEYEDALEYALRAGDDFDVDENSDYVETIVAKCIDMYIETASETYKNPEQKSPIDQRLRDIVERMIQKCLDDN- 145 (929)
T ss_pred HHHHHHHHHHHHHHHHHcCCccccccCccchhhHHHHHHHHHHHHHHHHHhcCccccCCCCHHHHHHHHHHHHHhhhhh-
Confidence 467778889999887666543445667777777766544221 0 01223344444444432211
Q ss_pred hHHHHHHHHhHcCCChhHHHH-HHccCCCCCcc--hHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHh
Q 004487 109 IICNSLVDSYCKIRCLDLARR-VFKEMPQKDSV--SFNALITGFAKEGLNEEAIKLFVEMQHLGFKPSDFTFAAALSAGV 185 (749)
Q Consensus 109 ~~~~~li~~~~~~g~~~~A~~-~~~~m~~~~~~--~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~ 185 (749)
-|-.+|.......+++--.+ +++.-..++.. .++.+++.--..+--.+.+..+-.....+-.|| |..+.+++.
T Consensus 146 -e~~~aiGia~E~~rld~ie~Ail~~d~~~~~~~yll~l~~s~v~~~efR~~vlr~lv~~y~~~~~PD---y~~vc~c~v 221 (929)
T KOG2062|consen 146 -EYKQAIGIAFETRRLDIIEEAILKSDSVIGNLTYLLELLISLVNNREFRNKVLRLLVKTYLKLPSPD---YFSVCQCYV 221 (929)
T ss_pred -HHHHHHhHHhhhhhHHHHHHHhccccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHccCCCCC---eeeeeeeeE
Confidence 12222322222222222222 11111112211 223333322211111222222222222334555 445667777
Q ss_pred CCCChHHHHHHHHHHHH
Q 004487 186 GLADIALGRQVHAFVVK 202 (749)
Q Consensus 186 ~~~~~~~a~~~~~~~~~ 202 (749)
-..+.+.+.+++..+++
T Consensus 222 ~Ldd~~~va~ll~kL~~ 238 (929)
T KOG2062|consen 222 FLDDAEAVADLLEKLVK 238 (929)
T ss_pred EcCCHHHHHHHHHHHHh
Confidence 88888888888888877
No 407
>PF06957 COPI_C: Coatomer (COPI) alpha subunit C-terminus; InterPro: IPR010714 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the C terminus (approximately 500 residues) of the eukaryotic coatomer alpha subunit [, ]. This domain is found along with the IPR006692 from INTERPRO domain. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0005515 protein binding, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030126 COPI vesicle coat; PDB: 3MKR_B 3MV2_E 3MKQ_B 3MV3_A.
Probab=40.08 E-value=1.4e+02 Score=31.42 Aligned_cols=41 Identities=17% Similarity=0.239 Sum_probs=29.9
Q ss_pred HHhCCCCCC--HHhHHHHHHHHHhcCCHHHHHHHHHHHhcCCC
Q 004487 536 MAQMPFEPD--EIMWSSVINSCRIHKNLEFAKKAADQLFKMEK 576 (749)
Q Consensus 536 ~~~~~~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~ 576 (749)
|....+.|. ..++++.++.+.+++|+..|-.+.++++++.|
T Consensus 289 FThc~LQp~H~~LaLr~AM~~~~K~KNf~tAa~FArRLLel~p 331 (422)
T PF06957_consen 289 FTHCKLQPSHLILALRSAMSQAFKLKNFITAASFARRLLELNP 331 (422)
T ss_dssp HCCS---HHHHHHHHHHHHHHCCCTTBHHHHHHHHHHHHCT--
T ss_pred HhcCCCcHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHcCC
Confidence 444455654 45677888889999999999999999999998
No 408
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=40.05 E-value=1.4e+02 Score=30.03 Aligned_cols=86 Identities=7% Similarity=0.079 Sum_probs=67.3
Q ss_pred HHHHHHcCCHHHHHHHHHhC----CCCC--CHHhHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHc
Q 004487 520 VDILCRSGCFDEAEKLMAQM----PFEP--DEIMWSSVINSCRIHKNLEFAKKAADQLFKMEKLRDAAPYVAMSNIYAVA 593 (749)
Q Consensus 520 i~~~~~~g~~~~A~~~~~~~----~~~p--~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 593 (749)
.+-|.+..++..|...|.+. --.| +.+.|+.-..+-...||+..++.-..+++..+| .+...|..=+.++...
T Consensus 88 GN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P-~h~Ka~~R~Akc~~eL 166 (390)
T KOG0551|consen 88 GNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKP-THLKAYIRGAKCLLEL 166 (390)
T ss_pred hHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCc-chhhhhhhhhHHHHHH
Confidence 45577788889999888776 1123 366777766777788999999999999999999 8888888888888888
Q ss_pred CCchhHHHHHHHH
Q 004487 594 GQWESVSQVKKAM 606 (749)
Q Consensus 594 g~~~~a~~~~~~m 606 (749)
.++++|....+..
T Consensus 167 e~~~~a~nw~ee~ 179 (390)
T KOG0551|consen 167 ERFAEAVNWCEEG 179 (390)
T ss_pred HHHHHHHHHHhhh
Confidence 8877777665543
No 409
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=39.78 E-value=1.7e+02 Score=22.85 Aligned_cols=65 Identities=14% Similarity=0.049 Sum_probs=38.4
Q ss_pred HHHHHHHHHHhCCCCchhHHHHHHHHhHcCCChhHHHHHHccCCCCCcchHHHHHHHHHhCCChhHH
Q 004487 92 LIQVHADIIKFGYNSILIICNSLVDSYCKIRCLDLARRVFKEMPQKDSVSFNALITGFAKEGLNEEA 158 (749)
Q Consensus 92 a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A 158 (749)
+.++++..++.|+- +..-...+-..--..|+.+.|+++++.++ +....|..+++++-..|.-+-|
T Consensus 21 ~~~v~d~ll~~~il-T~~d~e~I~aa~~~~g~~~~ar~LL~~L~-rg~~aF~~Fl~aLreT~~~~LA 85 (88)
T cd08819 21 TRDVCDKCLEQGLL-TEEDRNRIEAATENHGNESGARELLKRIV-QKEGWFSKFLQALRETEHHELA 85 (88)
T ss_pred HHHHHHHHHhcCCC-CHHHHHHHHHhccccCcHHHHHHHHHHhc-cCCcHHHHHHHHHHHcCchhhh
Confidence 34566666666642 11222222222224577788888888887 6777777888877777665444
No 410
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=39.55 E-value=60 Score=25.62 Aligned_cols=38 Identities=13% Similarity=0.195 Sum_probs=16.5
Q ss_pred HHHHhcCCCCCCchhHHHHHHHHHHcCCchhHHHHHHHH
Q 004487 568 ADQLFKMEKLRDAAPYVAMSNIYAVAGQWESVSQVKKAM 606 (749)
Q Consensus 568 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 606 (749)
+++.++.+| .|...-..++..+...|++++|.+.+-.+
T Consensus 11 l~~~~a~~P-~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~ 48 (90)
T PF14561_consen 11 LEAALAANP-DDLDARYALADALLAAGDYEEALDQLLEL 48 (90)
T ss_dssp HHHHHHHST-T-HHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHcCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 333344444 44444444444444444444444444444
No 411
>PRK13342 recombination factor protein RarA; Reviewed
Probab=39.35 E-value=4.9e+02 Score=27.58 Aligned_cols=167 Identities=11% Similarity=-0.038 Sum_probs=0.0
Q ss_pred ChhHHHHHHHHHHHC---CC-CCChhhHHHHHHHHhCCCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHcCCChHHHH
Q 004487 154 LNEEAIKLFVEMQHL---GF-KPSDFTFAAALSAGVGLADIALGRQVHAFVVKTNFVENVFVANALLDLYSKHDCVVEAR 229 (749)
Q Consensus 154 ~~~~A~~l~~~m~~~---g~-~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~ 229 (749)
..++...+++..... |+ ..+......++..+ .|+...+..+++.+... .-......+.++.
T Consensus 152 s~e~i~~lL~~~l~~~~~~~i~i~~~al~~l~~~s--~Gd~R~aln~Le~~~~~-------------~~~It~~~v~~~~ 216 (413)
T PRK13342 152 SEEDIEQLLKRALEDKERGLVELDDEALDALARLA--NGDARRALNLLELAALG-------------VDSITLELLEEAL 216 (413)
T ss_pred CHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHhC--CCCHHHHHHHHHHHHHc-------------cCCCCHHHHHHHH
Q ss_pred HHHccCCCCCcchHHHHHHHHHhc---CChhHHHHHHHHHHHCCCCCCcchHHHHHHHHHccC-----ChHHHHHHHHHH
Q 004487 230 KLFGEMPEVDGVSYNVMITCYAWN---EQYKESLKLFRELQFTRFDRSQFPFSTLLSVVANKL-----DLQIGRQIHTQT 301 (749)
Q Consensus 230 ~~f~~~~~~~~~~~~~li~~~~~~---g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~-----~~~~a~~~~~~~ 301 (749)
.......+++......+++++.+. .+++.|+..+..|...|..|....-..+..++...| .+..+...++..
T Consensus 217 ~~~~~~~d~~~~~~~~~isa~~ks~rgsd~~aal~~l~~~l~~G~d~~~i~rrl~~~a~edig~a~~~~~~~~~~~~~~~ 296 (413)
T PRK13342 217 QKRAARYDKDGDEHYDLISALHKSIRGSDPDAALYYLARMLEAGEDPLFIARRLVIIASEDIGLADPNALQVAVAAADAV 296 (413)
T ss_pred hhhhhccCCCccHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhhcccCHHHHHHHHHHHHHH
Q ss_pred HHhcCCcchhHHHHHHHHHHhcCCHHHHHHHHHh
Q 004487 302 IVTTAISEVKVANSLVDMYAKCGRFEEAKEIFAN 335 (749)
Q Consensus 302 ~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 335 (749)
...|++-........+-.++.+-.-..+...++.
T Consensus 297 ~~~g~pe~~~~l~~~~~~l~~~pksn~~~~a~~~ 330 (413)
T PRK13342 297 ERIGMPEGRIALAQAVIYLALAPKSNAAYTAINA 330 (413)
T ss_pred HHhCCcHHHHHHHHHHHHHHcCCCccHHHHHHHH
No 412
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=38.91 E-value=31 Score=29.32 Aligned_cols=33 Identities=21% Similarity=0.400 Sum_probs=25.1
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 004487 453 AQNGDAQATLKSFEDMVQSGYQPDSVSLLSVLSAC 487 (749)
Q Consensus 453 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~ 487 (749)
...|.-.+|..+|++|++.|-+||. |+.|+.++
T Consensus 106 R~ygsk~DaY~VF~kML~~G~pPdd--W~~Ll~~a 138 (140)
T PF11663_consen 106 RAYGSKTDAYAVFRKMLERGNPPDD--WDALLKEA 138 (140)
T ss_pred hhhccCCcHHHHHHHHHhCCCCCcc--HHHHHHHh
Confidence 3456667899999999999999985 55566544
No 413
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=38.83 E-value=3.6e+02 Score=25.79 Aligned_cols=48 Identities=21% Similarity=0.436 Sum_probs=34.8
Q ss_pred HHHHHhhCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH
Q 004487 430 AIQTFKEMPERNIVSWNALISACAQNGDAQATLKSFEDMVQSGYQPDSV 478 (749)
Q Consensus 430 A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 478 (749)
+..+|+-..+|.+.....|+..+. .+++++|.+++.++-+.|+.|...
T Consensus 227 ~enVfKv~d~PhP~~v~~ml~~~~-~~~~~~A~~il~~lw~lgysp~Di 274 (333)
T KOG0991|consen 227 QENVFKVCDEPHPLLVKKMLQACL-KRNIDEALKILAELWKLGYSPEDI 274 (333)
T ss_pred hhhhhhccCCCChHHHHHHHHHHH-hccHHHHHHHHHHHHHcCCCHHHH
Confidence 344555555677777777776654 467899999999999988888654
No 414
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=38.63 E-value=40 Score=28.65 Aligned_cols=32 Identities=28% Similarity=0.416 Sum_probs=24.3
Q ss_pred hCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHH
Q 004487 151 KEGLNEEAIKLFVEMQHLGFKPSDFTFAAALSAG 184 (749)
Q Consensus 151 ~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~ 184 (749)
..|.-..|..+|+.|++.|-+||. |+.|+.++
T Consensus 107 ~ygsk~DaY~VF~kML~~G~pPdd--W~~Ll~~a 138 (140)
T PF11663_consen 107 AYGSKTDAYAVFRKMLERGNPPDD--WDALLKEA 138 (140)
T ss_pred hhccCCcHHHHHHHHHhCCCCCcc--HHHHHHHh
Confidence 346667899999999999999974 55565543
No 415
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=38.60 E-value=92 Score=24.72 Aligned_cols=25 Identities=16% Similarity=0.178 Sum_probs=17.5
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhcCC
Q 004487 551 VINSCRIHKNLEFAKKAADQLFKME 575 (749)
Q Consensus 551 ll~~~~~~g~~~~a~~~~~~~~~~~ 575 (749)
+.......|+.++|...+++++++-
T Consensus 47 lA~~~~~~G~~~~A~~~l~eAi~~A 71 (94)
T PF12862_consen 47 LAELHRRFGHYEEALQALEEAIRLA 71 (94)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 3444567788888888888877654
No 416
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=38.17 E-value=49 Score=23.92 Aligned_cols=30 Identities=13% Similarity=0.129 Sum_probs=21.7
Q ss_pred CchhHHHHHHHHHHcCCchhHHHHHHHHHh
Q 004487 579 DAAPYVAMSNIYAVAGQWESVSQVKKAMRE 608 (749)
Q Consensus 579 ~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 608 (749)
|-.....++.+|...|++++|.++++.+.+
T Consensus 22 D~~NhLqvI~gllqlg~~~~a~eYi~~~~~ 51 (62)
T PF14689_consen 22 DFLNHLQVIYGLLQLGKYEEAKEYIKELSK 51 (62)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 566666777888888888888888777643
No 417
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=37.44 E-value=7.5e+02 Score=29.11 Aligned_cols=128 Identities=13% Similarity=0.202 Sum_probs=62.4
Q ss_pred HHHHHHHHHhCCChhHHHHHHHHHHHCCCCcCHHhHHHHHHHhcccCcHHHHHHHHHHHHHhCCC--CchhHHHHHHHHH
Q 004487 344 WTAMISAYVQKGNLEEALNLFIEMCRANISADQATFASILRASAELASLSLGKQLHSFVIRSGFM--SNVFSGSALLDMY 421 (749)
Q Consensus 344 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~li~~y 421 (749)
|..|+.-|...|+.++|++++.+....--.-|.. ..+.-+.+.+++.+.+-+ +-+..|.. +
T Consensus 507 y~~Li~LY~~kg~h~~AL~ll~~l~d~~~~~d~~-------------~~~~~e~ii~YL~~l~~~~~~Li~~y~~----w 569 (877)
T KOG2063|consen 507 YRELIELYATKGMHEKALQLLRDLVDEDSDTDSF-------------QLDGLEKIIEYLKKLGAENLDLILEYAD----W 569 (877)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHhccccccccc-------------hhhhHHHHHHHHHHhcccchhHHHHHhh----h
Confidence 7788888888888888888888876531000100 011112233333333322 11111111 1
Q ss_pred HhcCCHHHHHHHHhhCCCCCcchHHH-HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHh
Q 004487 422 AKSGSLKDAIQTFKEMPERNIVSWNA-LISACAQNGDAQATLKSFEDMVQSGYQPDSVSLLSVLSACS 488 (749)
Q Consensus 422 ~~~g~~~~A~~~~~~~~~~~~~~~~~-li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~ 488 (749)
.-..+.+...++|..-.+....+.+. -+-.|......+-++..++.+....-.++..-++.++.-|.
T Consensus 570 vl~~~p~~gi~Ift~~~~~~~~sis~~~Vl~~l~~~~~~l~I~YLE~li~~~~~~~~~lht~ll~ly~ 637 (877)
T KOG2063|consen 570 VLNKNPEAGIQIFTSEDKQEAESISRDDVLNYLKSKEPKLLIPYLEHLISDNRLTSTLLHTVLLKLYL 637 (877)
T ss_pred hhccCchhheeeeeccChhhhccCCHHHHHHHhhhhCcchhHHHHHHHhHhccccchHHHHHHHHHHH
Confidence 12344555555555411101111111 22335555666777777777776655556665555555554
No 418
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=37.38 E-value=4.9e+02 Score=26.99 Aligned_cols=88 Identities=16% Similarity=0.155 Sum_probs=53.2
Q ss_pred HHHhccCCHHHHHHHHHHhHHhcCCCCC--hHHHHHHHHHHH-HcCCHHHHHHHHHhCCC---------CCCHHhHHHHH
Q 004487 485 SACSHCGLIEEGLQYFNSMTQKYKLRPK--KEHYASMVDILC-RSGCFDEAEKLMAQMPF---------EPDEIMWSSVI 552 (749)
Q Consensus 485 ~a~~~~g~~~~a~~~~~~m~~~~~~~p~--~~~~~~li~~~~-~~g~~~~A~~~~~~~~~---------~p~~~~~~~ll 552 (749)
....+.|-+..|+++.+-+. .+.|+ +.....+||.|+ ++++++--+++.+.... -|+ ..|+..+
T Consensus 111 ~~L~~RG~~rTAlE~~KlLl---sLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~~~~~~~~~~lPn-~a~S~aL 186 (360)
T PF04910_consen 111 QSLGRRGCWRTALEWCKLLL---SLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLAKCYRNWLSLLPN-FAFSIAL 186 (360)
T ss_pred HHHHhcCcHHHHHHHHHHHH---hcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhhhhhhhhhhhCcc-HHHHHHH
Confidence 35677788888888776665 45554 334444566654 67777777777766422 122 3344444
Q ss_pred HHHHhcCC--------------HHHHHHHHHHHhcCCC
Q 004487 553 NSCRIHKN--------------LEFAKKAADQLFKMEK 576 (749)
Q Consensus 553 ~~~~~~g~--------------~~~a~~~~~~~~~~~~ 576 (749)
.-+...++ .+.|...+++++..-|
T Consensus 187 A~~~l~~~~~~~~~~~~~~~~~~~~A~~~L~~Ai~~fP 224 (360)
T PF04910_consen 187 AYFRLEKEESSQSSAQSGRSENSESADEALQKAILRFP 224 (360)
T ss_pred HHHHhcCccccccccccccccchhHHHHHHHHHHHHhH
Confidence 43333222 3788888888888777
No 419
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=37.08 E-value=75 Score=22.95 Aligned_cols=25 Identities=24% Similarity=0.380 Sum_probs=12.4
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHhH
Q 004487 480 LLSVLSACSHCGLIEEGLQYFNSMT 504 (749)
Q Consensus 480 ~~~ll~a~~~~g~~~~a~~~~~~m~ 504 (749)
...++.++...|++++|.++.+.+.
T Consensus 26 hLqvI~gllqlg~~~~a~eYi~~~~ 50 (62)
T PF14689_consen 26 HLQVIYGLLQLGKYEEAKEYIKELS 50 (62)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 3444555555555555555555444
No 420
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=35.19 E-value=4.1e+02 Score=25.41 Aligned_cols=165 Identities=15% Similarity=0.228 Sum_probs=96.4
Q ss_pred HHHHHHhcCCHHHHHHHHhhCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHH
Q 004487 417 LLDMYAKSGSLKDAIQTFKEMPERNIVSWNALISACAQNGDAQATLKSFEDMVQSGYQPDSVSLLSVLSACSHCGLIEEG 496 (749)
Q Consensus 417 li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a 496 (749)
-+..|.+.-++.-|...++++.+|=. +-- -+--|.+..+.+--.++.+-...++++-+.....+++ +...|++.+|
T Consensus 136 tMEiyS~ttRFalaCN~s~KIiEPIQ-SRC-AiLRysklsd~qiL~Rl~~v~k~Ekv~yt~dgLeaii--fta~GDMRQa 211 (333)
T KOG0991|consen 136 TMEIYSNTTRFALACNQSEKIIEPIQ-SRC-AILRYSKLSDQQILKRLLEVAKAEKVNYTDDGLEAII--FTAQGDMRQA 211 (333)
T ss_pred HHHHHcccchhhhhhcchhhhhhhHH-hhh-HhhhhcccCHHHHHHHHHHHHHHhCCCCCcchHHHhh--hhccchHHHH
Confidence 35566666666666666666665421 111 1223444444444445555555566665555555444 5678888888
Q ss_pred HHHHHHhHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHhcCCC
Q 004487 497 LQYFNSMTQKYKLRPKKEHYASMVDILCRSGCFDEAEKLMAQMPFEPDEIMWSSVINSCRIHKNLEFAKKAADQLFKMEK 576 (749)
Q Consensus 497 ~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~ 576 (749)
+.-++.....+|... +..+|+-. -.|.+.....++..|.. +++++|.+++.++.+++-
T Consensus 212 lNnLQst~~g~g~Vn--------------------~enVfKv~-d~PhP~~v~~ml~~~~~-~~~~~A~~il~~lw~lgy 269 (333)
T KOG0991|consen 212 LNNLQSTVNGFGLVN--------------------QENVFKVC-DEPHPLLVKKMLQACLK-RNIDEALKILAELWKLGY 269 (333)
T ss_pred HHHHHHHhccccccc--------------------hhhhhhcc-CCCChHHHHHHHHHHHh-ccHHHHHHHHHHHHHcCC
Confidence 888877765444322 12223222 24777777778877765 679999999999998876
Q ss_pred CCCchhHHHHHHHHHHcCCchhHHHHH-HHHHhCCC
Q 004487 577 LRDAAPYVAMSNIYAVAGQWESVSQVK-KAMRERGV 611 (749)
Q Consensus 577 ~~~~~~~~~l~~~~~~~g~~~~a~~~~-~~m~~~g~ 611 (749)
.. -..+.+.+....+++-++.++ +.+++-|+
T Consensus 270 -sp---~Dii~~~FRv~K~~~~~E~~rlE~ikeig~ 301 (333)
T KOG0991|consen 270 -SP---EDIITTLFRVVKNMDVAESLRLEFIKEIGL 301 (333)
T ss_pred -CH---HHHHHHHHHHHHhccHHHHHHHHHHHHHhh
Confidence 22 233455565666666555553 33444454
No 421
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=34.50 E-value=74 Score=30.00 Aligned_cols=54 Identities=19% Similarity=0.263 Sum_probs=35.8
Q ss_pred HHHcCCHHHHHHHHHhC-CCCC-CHHhHHHHHHHHHhcCCHHHHHHHHHHHhcCCC
Q 004487 523 LCRSGCFDEAEKLMAQM-PFEP-DEIMWSSVINSCRIHKNLEFAKKAADQLFKMEK 576 (749)
Q Consensus 523 ~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~ 576 (749)
....|+.+.|.+++.+. ...| ....|--+...--+.|+++.|.+.+++.++++|
T Consensus 5 ~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp 60 (287)
T COG4976 5 LAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDP 60 (287)
T ss_pred hcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCc
Confidence 34556666666666665 4444 356666666666777777777777777777776
No 422
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=34.49 E-value=3.2e+02 Score=23.93 Aligned_cols=49 Identities=8% Similarity=0.152 Sum_probs=25.2
Q ss_pred CcchHHHHHHHHHhcCC-HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc
Q 004487 441 NIVSWNALISACAQNGD-AQATLKSFEDMVQSGYQPDSVSLLSVLSACSH 489 (749)
Q Consensus 441 ~~~~~~~li~~~~~~g~-~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~ 489 (749)
+..+|.+++.+.++..- ---+..+|.-|.+.+.+++..-|..++.+|.+
T Consensus 78 ~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~li~~~l~ 127 (145)
T PF13762_consen 78 DNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSCLIKAALR 127 (145)
T ss_pred ccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc
Confidence 44455555555543333 22344555555555555555555555555544
No 423
>PF04034 DUF367: Domain of unknown function (DUF367); InterPro: IPR007177 This domain is found in a family of proteins of unknown function. It appears to be found in eukaryotes and archaebacteria, and occurs associated with a potential metal-binding region in RNase L inhibitor, RLI (IPR007209 from INTERPRO).
Probab=34.47 E-value=2.9e+02 Score=23.44 Aligned_cols=58 Identities=12% Similarity=0.162 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHHhH-HHHHHHHHhcCCHHHHHHHHHHH
Q 004487 514 EHYASMVDILCRSGCFDEAEKLMAQMPFEPDEIMW-SSVINSCRIHKNLEFAKKAADQL 571 (749)
Q Consensus 514 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~-~~ll~~~~~~g~~~~a~~~~~~~ 571 (749)
.+..++..++.=.|..++|.++++..+-.++-... .-++..|....+-++-..+-++.
T Consensus 67 scvEAlAAaLyI~G~~~~A~~lL~~FkWG~~F~~LN~elLe~Y~~~~~~~ev~~~q~~~ 125 (127)
T PF04034_consen 67 SCVEALAAALYILGFKEQAEELLSKFKWGHTFLELNKELLEAYAKCKTSEEVIEIQNEY 125 (127)
T ss_pred cHHHHHHHHHHHcCCHHHHHHHHhcCCCcHHHHHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 44455666666777777777777776444443333 34666676666665555554443
No 424
>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]
Probab=34.37 E-value=3e+02 Score=26.07 Aligned_cols=91 Identities=20% Similarity=0.266 Sum_probs=0.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-----CHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHH
Q 004487 445 WNALISACAQNGDAQATLKSFEDMVQSGYQP-----DSVSLLSVLSACSHCGLIEEGLQYFNSMTQKYKLRPKKEHYASM 519 (749)
Q Consensus 445 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-----~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l 519 (749)
.|.||--|.-+..+.+|.+.|..-.. +.| +...-..-+......|++++|.+..+.+..+ -+.-|.+.+--|
T Consensus 29 ~n~LVmnylv~eg~~EaA~~Fa~e~~--i~~~~~d~~~~~eR~~Ir~~I~~G~Ie~Aie~in~l~Pe-iLd~n~~l~F~L 105 (228)
T KOG2659|consen 29 LNRLVMNYLVHEGYVEAAEKFAKESG--IKPPSIDLDSMDERLQIRRAIEEGQIEEAIEKVNQLNPE-ILDTNRELFFHL 105 (228)
T ss_pred HHHHHHHHHHhccHHHHHHHhccccC--CCCccCchhhHhHHHHHHHHHHhccHHHHHHHHHHhChH-HHccchhHHHHH
Q ss_pred HHH----HHHcCCHHHHHHHHHh
Q 004487 520 VDI----LCRSGCFDEAEKLMAQ 538 (749)
Q Consensus 520 i~~----~~~~g~~~~A~~~~~~ 538 (749)
... +.|.|..++|+++.+.
T Consensus 106 q~q~lIEliR~~~~eeal~F~q~ 128 (228)
T KOG2659|consen 106 QQLHLIELIREGKTEEALEFAQT 128 (228)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHH
No 425
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=34.25 E-value=7e+02 Score=27.86 Aligned_cols=62 Identities=6% Similarity=0.012 Sum_probs=35.9
Q ss_pred chhHHHHHHHHhHcCCChhHHHHHHccCCCCC-cchHHHHHHHHHhCCChhHHHHHHHHHHHCCC
Q 004487 107 ILIICNSLVDSYCKIRCLDLARRVFKEMPQKD-SVSFNALITGFAKEGLNEEAIKLFVEMQHLGF 170 (749)
Q Consensus 107 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~ 170 (749)
....++.|+..+.. =+.+.-.++++++.. . ...|..++++....|-.....-+.+.+....+
T Consensus 309 ~~~~f~~lv~~lR~-~~~e~l~~l~~~~~~-~~~~~r~~~~Dal~~~GT~~a~~~i~~~i~~~~~ 371 (574)
T smart00638 309 AAAKFLRLVRLLRT-LSEEQLEQLWRQLYE-KKKKARRIFLDAVAQAGTPPALKFIKQWIKNKKI 371 (574)
T ss_pred hHHHHHHHHHHHHh-CCHHHHHHHHHHHHh-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCC
Confidence 34455666655433 334555556555544 2 46778888888888776655555555544333
No 426
>PRK10941 hypothetical protein; Provisional
Probab=33.76 E-value=3.9e+02 Score=26.35 Aligned_cols=59 Identities=12% Similarity=0.193 Sum_probs=29.8
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHhccCCHHHHHHHHHHhHHh
Q 004487 446 NALISACAQNGDAQATLKSFEDMVQSGYQPDSV-SLLSVLSACSHCGLIEEGLQYFNSMTQK 506 (749)
Q Consensus 446 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~ 506 (749)
+.+-.+|.+.++++.|++..+.+.. +.|+.. -+.--.-.|.+.|.+..|..=++...+.
T Consensus 185 ~nLK~~~~~~~~~~~AL~~~e~ll~--l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~ 244 (269)
T PRK10941 185 DTLKAALMEEKQMELALRASEALLQ--FDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQ 244 (269)
T ss_pred HHHHHHHHHcCcHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHh
Confidence 3344555566666666666666655 444433 2222333355555555555544444433
No 427
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=33.46 E-value=89 Score=19.63 Aligned_cols=29 Identities=10% Similarity=-0.009 Sum_probs=16.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHH--HHhcCCC
Q 004487 548 WSSVINSCRIHKNLEFAKKAAD--QLFKMEK 576 (749)
Q Consensus 548 ~~~ll~~~~~~g~~~~a~~~~~--~~~~~~~ 576 (749)
|-++...+...|++++|+.+++ -+..+++
T Consensus 4 ~y~~a~~~y~~~ky~~A~~~~~y~~l~~ld~ 34 (36)
T PF07720_consen 4 LYGLAYNFYQKGKYDEAIHFFQYAFLCALDK 34 (36)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHhcc
Confidence 3445555667777777777733 5555544
No 428
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=33.31 E-value=1.7e+02 Score=25.48 Aligned_cols=66 Identities=9% Similarity=0.017 Sum_probs=45.4
Q ss_pred HHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHcCCchhH
Q 004487 530 DEAEKLMAQMPFEPDEIMWSSVINSCRIHKNLEFAKKAADQLFKMEKLRDAAPYVAMSNIYAVAGQWESV 599 (749)
Q Consensus 530 ~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 599 (749)
+.|.++.+-|+- ....-.........|++..|..+.+.++..+| .|...-...+++|.+.|.-.+.
T Consensus 58 ~~A~~~v~l~GG---~d~vl~~A~~~~~~gd~~wA~~L~d~l~~adp-~n~~ar~l~A~al~~lg~~~~~ 123 (141)
T PF14863_consen 58 EEAKRYVELAGG---ADKVLERAQAALAAGDYQWAAELLDHLVFADP-DNEEARQLKADALEQLGYQSEN 123 (141)
T ss_dssp HHHHHHHHHTTC---HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-T-T-HHHHHHHHHHHHHHHHH-SS
T ss_pred HHHHHHHHHcCC---HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCC-CcHHHHHHHHHHHHHHHHhccC
Confidence 467777777742 22333344556678999999999999999999 8888888888888777654443
No 429
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=33.16 E-value=4.3e+02 Score=25.03 Aligned_cols=121 Identities=17% Similarity=0.176 Sum_probs=70.0
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCC----ChHHHHH
Q 004487 444 SWNALISACAQNGDAQATLKSFEDMVQSGYQP-DSVSLLSVLSACSHCGLIEEGLQYFNSMTQKYKLRP----KKEHYAS 518 (749)
Q Consensus 444 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p----~~~~~~~ 518 (749)
|.+.-++.+.+.+..++|+.+.++-++. +| |.-+-..++..++-.|++++|..-++... .+.| ....|..
T Consensus 3 Tl~~t~seLL~~~sL~dai~~a~~qVka--kPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a---~l~p~~t~~a~lyr~ 77 (273)
T COG4455 3 TLRDTISELLDDNSLQDAIGLARDQVKA--KPTDAGGRHFLFQLLCVAGDWEKALAQLNLAA---TLSPQDTVGASLYRH 77 (273)
T ss_pred chHHHHHHHHHhccHHHHHHHHHHHHhc--CCccccchhHHHHHHhhcchHHHHHHHHHHHh---hcCcccchHHHHHHH
Confidence 3445567778888888888888877774 44 44466667778888999999987766544 2344 3455555
Q ss_pred HHHHHHHcCCHHHHH-HHHHhC--CCCC--CHHhHHHHH-HH--HHhcCCHHHHHHHHHHHhcCCC
Q 004487 519 MVDILCRSGCFDEAE-KLMAQM--PFEP--DEIMWSSVI-NS--CRIHKNLEFAKKAADQLFKMEK 576 (749)
Q Consensus 519 li~~~~~~g~~~~A~-~~~~~~--~~~p--~~~~~~~ll-~~--~~~~g~~~~a~~~~~~~~~~~~ 576 (749)
+|.+- .+. ++|..- |.-+ ....|...+ .+ |...|.-+....+-+..++..|
T Consensus 78 lir~e-------a~R~evfag~~~Pgflg~p~p~wva~L~aala~h~dg~gea~~alreqal~aa~ 136 (273)
T COG4455 78 LIRCE-------AARNEVFAGGAVPGFLGGPSPEWVAALLAALALHSDGAGEARTALREQALKAAP 136 (273)
T ss_pred HHHHH-------HHHHHHhccCCCCCCcCCCCHHHHHHHHHHHhcccCCcchHHHHHHHHHHhhCC
Confidence 55431 222 233322 1111 234555444 33 3333344555566667777666
No 430
>PF15161 Neuropep_like: Neuropeptide-like
Probab=32.85 E-value=19 Score=24.65 Aligned_cols=17 Identities=35% Similarity=0.821 Sum_probs=12.1
Q ss_pred eccccCcchhHHHHHhhh
Q 004487 704 KNLRACTDCHAAIKLISK 721 (749)
Q Consensus 704 ~nl~~c~~~h~~~~~~s~ 721 (749)
.--|-|.|||.+- |+.+
T Consensus 11 aesRPCVDCHAFe-fmqR 27 (65)
T PF15161_consen 11 AESRPCVDCHAFE-FMQR 27 (65)
T ss_pred CCCCCchhhHHHH-HHHH
Confidence 4567899999765 5543
No 431
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=31.69 E-value=76 Score=31.39 Aligned_cols=42 Identities=36% Similarity=0.461 Sum_probs=32.4
Q ss_pred CCcch-HHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHH
Q 004487 137 KDSVS-FNALITGFAKEGLNEEAIKLFVEMQHLGFKPSDFTFA 178 (749)
Q Consensus 137 ~~~~~-~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~ 178 (749)
+|..+ ||.-|...++.|++++|+.++++..+.|+.--..||.
T Consensus 254 ~dTe~Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tFi 296 (303)
T PRK10564 254 NDTESYFNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTFI 296 (303)
T ss_pred chHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHHH
Confidence 34443 6788999999999999999999999888765555553
No 432
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=31.54 E-value=6.8e+02 Score=26.86 Aligned_cols=211 Identities=13% Similarity=0.088 Sum_probs=0.0
Q ss_pred HHHHHHHccCCCCC----------cchHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCc---------chHHHHHHHHH
Q 004487 226 VEARKLFGEMPEVD----------GVSYNVMITCYAWNEQYKESLKLFRELQFTRFDRSQ---------FPFSTLLSVVA 286 (749)
Q Consensus 226 ~~A~~~f~~~~~~~----------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~---------~t~~~ll~~~~ 286 (749)
|+|....++.++.| ......++..-.-.|++.+|++-+.+|.+.-..... ..-..+-.-|.
T Consensus 299 De~i~q~eklkq~d~~srilsm~km~~LE~iv~c~lv~~~~~~al~~i~dm~~w~~r~p~~~Llr~~~~~ih~LlGlys~ 378 (629)
T KOG2300|consen 299 DEAIKQTEKLKQADLMSRILSMFKMILLEHIVMCRLVRGDYVEALEEIVDMKNWCTRFPTPLLLRAHEAQIHMLLGLYSH 378 (629)
T ss_pred HHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCchHHHHHhHHHHHHHHhhHhh
Q ss_pred ccCChHHHHHHHHHHHHhcCCcchhHH--HHHHHHHHhcCCHHHHHHHHHhcCCCCccc----------HHHHHHHHHhC
Q 004487 287 NKLDLQIGRQIHTQTIVTTAISEVKVA--NSLVDMYAKCGRFEEAKEIFANLSHISTVP----------WTAMISAYVQK 354 (749)
Q Consensus 287 ~~~~~~~a~~~~~~~~~~g~~~~~~~~--~~li~~~~~~g~~~~A~~~~~~~~~~~~~~----------~~~li~~~~~~ 354 (749)
..+..+.|..-+..+.+..-..|...+ ..+.-.|.+.|+.++-.++++.+..++..+ +-.-.--....
T Consensus 379 sv~~~enAe~hf~~a~k~t~~~dl~a~~nlnlAi~YL~~~~~ed~y~~ld~i~p~nt~s~ssq~l~a~~~~v~glfaf~q 458 (629)
T KOG2300|consen 379 SVNCYENAEFHFIEATKLTESIDLQAFCNLNLAISYLRIGDAEDLYKALDLIGPLNTNSLSSQRLEASILYVYGLFAFKQ 458 (629)
T ss_pred hcchHHHHHHHHHHHHHhhhHHHHHHHHHHhHHHHHHHhccHHHHHHHHHhcCCCCCCcchHHHHHHHHHHHHHHHHHHh
Q ss_pred CChhHHHHHHHHHHHCC-----CCcCHHhHHHHHHHhcccCcHHHHHHHHHHHHHh-----CCCCchhHHHHHHHHHHhc
Q 004487 355 GNLEEALNLFIEMCRAN-----ISADQATFASILRASAELASLSLGKQLHSFVIRS-----GFMSNVFSGSALLDMYAKS 424 (749)
Q Consensus 355 g~~~~A~~l~~~m~~~g-----~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~-----~~~~~~~~~~~li~~y~~~ 424 (749)
+++.||...+++-.+.. .+...-....+-......|+..+++....-..+. ++..-......+-+.|..+
T Consensus 459 n~lnEaK~~l~e~Lkmanaed~~rL~a~~LvLLs~v~lslgn~~es~nmvrpamqlAkKi~Di~vqLws~si~~~L~~a~ 538 (629)
T KOG2300|consen 459 NDLNEAKRFLRETLKMANAEDLNRLTACSLVLLSHVFLSLGNTVESRNMVRPAMQLAKKIPDIPVQLWSSSILTDLYQAL 538 (629)
T ss_pred ccHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHhcchHHHHhccchHHHHHhcCCCchHHHHHHHHHHHHHHHh
Q ss_pred CC--HHHHHHHHhh
Q 004487 425 GS--LKDAIQTFKE 436 (749)
Q Consensus 425 g~--~~~A~~~~~~ 436 (749)
|+ .+...+.|..
T Consensus 539 g~~~~~~e~e~~~~ 552 (629)
T KOG2300|consen 539 GEKGNEMENEAFRK 552 (629)
T ss_pred CcchhhHHHHHHHH
No 433
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=31.30 E-value=3.3e+02 Score=23.12 Aligned_cols=42 Identities=7% Similarity=0.021 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHCCCCCCHH-HHHHHHHHHhccCCHHHHHHHHH
Q 004487 460 ATLKSFEDMVQSGYQPDSV-SLLSVLSACSHCGLIEEGLQYFN 501 (749)
Q Consensus 460 ~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~ 501 (749)
.+.++|..|...|+--... -|..-...+...|++++|.++|+
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~ 123 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQ 123 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 5555555555555444332 33444444455555555555553
No 434
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=30.92 E-value=87 Score=30.80 Aligned_cols=57 Identities=11% Similarity=0.204 Sum_probs=24.8
Q ss_pred HcCCHHHHHHHHHhC-CCCCC-HHhHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCchh
Q 004487 525 RSGCFDEAEKLMAQM-PFEPD-EIMWSSVINSCRIHKNLEFAKKAADQLFKMEKLRDAAP 582 (749)
Q Consensus 525 ~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 582 (749)
+.|+.++|..+|+.. .+.|+ +.+..-+..-.-.++++-+|-+.|-+++...| .+..+
T Consensus 128 ~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP-~nseA 186 (472)
T KOG3824|consen 128 KDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISP-GNSEA 186 (472)
T ss_pred hccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCC-CchHH
Confidence 345555555555443 33332 22222222222334455555555555555555 44443
No 435
>PF08967 DUF1884: Domain of unknown function (DUF1884); InterPro: IPR014418 This group represents an uncharacterised conserved protein.; PDB: 2PK8_A.
Probab=30.37 E-value=59 Score=24.70 Aligned_cols=26 Identities=31% Similarity=0.532 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHcCCcCCCCccc
Q 004487 641 EIRRKIENLMQEMKKEGYKPDTSCAL 666 (749)
Q Consensus 641 ~~~~~l~~l~~~m~~~g~~pd~~~~~ 666 (749)
++...+++...++|..|+.||...+-
T Consensus 9 ~il~~ie~~inELk~dG~ePDivL~G 34 (85)
T PF08967_consen 9 RILELIEEKINELKEDGFEPDIVLVG 34 (85)
T ss_dssp HHHHHHHHHHHHHHHTT----EEEE-
T ss_pred HHHHHHHHHHHHHHhcCCCCCEEEEc
Confidence 46677788889999999999976543
No 436
>PRK11619 lytic murein transglycosylase; Provisional
Probab=30.10 E-value=8.7e+02 Score=27.65 Aligned_cols=189 Identities=10% Similarity=0.013 Sum_probs=92.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhhCCC--CCcchHHH-HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcc
Q 004487 414 GSALLDMYAKSGSLKDAIQTFKEMPE--RNIVSWNA-LISACAQNGDAQATLKSFEDMVQSGYQPDSVSLLSVLSACSHC 490 (749)
Q Consensus 414 ~~~li~~y~~~g~~~~A~~~~~~~~~--~~~~~~~~-li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~ 490 (749)
...-+..-.+.++++.+...|..|++ .+..-|.- +..++...|+.++|...|+++.. .. +|-.++.+ .+.
T Consensus 315 ~e~r~r~Al~~~dw~~~~~~i~~L~~~~~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a~---~~---~fYG~LAa-~~L 387 (644)
T PRK11619 315 LERRVRMALGTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLEQGRKAEAEEILRQLMQ---QR---GFYPMVAA-QRL 387 (644)
T ss_pred HHHHHHHHHHccCHHHHHHHHHhcCHhhccCHhhHHHHHHHHHHcCCHHHHHHHHHHHhc---CC---CcHHHHHH-HHc
Confidence 33344444567777777777777752 22222222 34454556777777777777632 11 23333322 111
Q ss_pred CCHHHH-HHHHHHhHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHH
Q 004487 491 GLIEEG-LQYFNSMTQKYKLRPKKEHYASMVDILCRSGCFDEAEKLMAQMPFEPDEIMWSSVINSCRIHKNLEFAKKAAD 569 (749)
Q Consensus 491 g~~~~a-~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~ 569 (749)
|..-.- ......-.....-.| -..-+..+...|+..+|...+..+-...+......+...-...|..+.++.+..
T Consensus 388 g~~~~~~~~~~~~~~~~~~~~~----~~~ra~~L~~~g~~~~a~~ew~~~~~~~~~~~~~~la~~A~~~g~~~~ai~~~~ 463 (644)
T PRK11619 388 GEEYPLKIDKAPKPDSALTQGP----EMARVRELMYWNMDNTARSEWANLVASRSKTEQAQLARYAFNQQWWDLSVQATI 463 (644)
T ss_pred CCCCCCCCCCCCchhhhhccCh----HHHHHHHHHHCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCHHHHHHHHh
Confidence 211000 000000000000001 112345667788888888888776223455555555555677888888887775
Q ss_pred HHhcCCC--CCCchhHHHHHHHHHHcCCchhHHHHHHHHHhCCCcc
Q 004487 570 QLFKMEK--LRDAAPYVAMSNIYAVAGQWESVSQVKKAMRERGVRK 613 (749)
Q Consensus 570 ~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~ 613 (749)
+....+. ..-+..|.-.+..++..-..+.+.-.--..+|.++.+
T Consensus 464 ~~~~~~~~~~rfp~~~~~~~~~~a~~~~v~~~lv~ai~rqES~f~p 509 (644)
T PRK11619 464 AGKLWDHLEERFPLAWNDEFRRYTSGKGIPQSYAMAIARQESAWNP 509 (644)
T ss_pred hchhHHHHHHhCCcchHHHHHHHHHHcCCCHHHHHHHHHHhcCCCC
Confidence 4432111 0123346556666666556666554333334666644
No 437
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=29.91 E-value=2.8e+02 Score=21.86 Aligned_cols=63 Identities=16% Similarity=0.140 Sum_probs=42.7
Q ss_pred CHHhHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCC-CchhHHHHHHHHHHcCCc-hhHHHHHHHH
Q 004487 544 DEIMWSSVINSCRIHKNLEFAKKAADQLFKMEKLR-DAAPYVAMSNIYAVAGQW-ESVSQVKKAM 606 (749)
Q Consensus 544 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~-~~a~~~~~~m 606 (749)
|....-.+...+...|+++.|...+-.+++.++.. +...-..|+.++...|.- .-+.+.+.+|
T Consensus 21 D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~~~plv~~~RRkL 85 (90)
T PF14561_consen 21 DLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGPGDPLVSEYRRKL 85 (90)
T ss_dssp -HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-TT-HHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCCCChHHHHHHHHH
Confidence 45566667778888899999998888888877633 466667788888777774 3566666655
No 438
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=29.74 E-value=1.2e+02 Score=31.81 Aligned_cols=54 Identities=7% Similarity=0.085 Sum_probs=32.9
Q ss_pred HHHHhcCCHHHHHHHHHHH-------hcCCCCCCchhHHHHHHHHHHcCCchhHHHHHHHH
Q 004487 553 NSCRIHKNLEFAKKAADQL-------FKMEKLRDAAPYVAMSNIYAVAGQWESVSQVKKAM 606 (749)
Q Consensus 553 ~~~~~~g~~~~a~~~~~~~-------~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 606 (749)
+...-.||+..|+++++.+ ...-|.-...+|..++-+|.-.+|+.+|.+.+...
T Consensus 130 Rvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~i 190 (404)
T PF10255_consen 130 RVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQI 190 (404)
T ss_pred HHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334445555555554432 22223245677778888888888888888887765
No 439
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=29.58 E-value=4.6e+02 Score=24.31 Aligned_cols=56 Identities=16% Similarity=0.197 Sum_probs=39.1
Q ss_pred HHHHHHhcCCHHHHHHHHhhCCCCCcch--HHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 004487 417 LLDMYAKSGSLKDAIQTFKEMPERNIVS--WNALISACAQNGDAQATLKSFEDMVQSG 472 (749)
Q Consensus 417 li~~y~~~g~~~~A~~~~~~~~~~~~~~--~~~li~~~~~~g~~~~A~~~~~~m~~~g 472 (749)
|.......|.+++|...++....++-.+ ...-.+.+...|+-++|..-|++.++.+
T Consensus 132 LArvq~q~~k~D~AL~~L~t~~~~~w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 132 LARVQLQQKKADAALKTLDTIKEESWAAIVAELRGDILLAKGDKQEARAAYEKALESD 189 (207)
T ss_pred HHHHHHHhhhHHHHHHHHhccccccHHHHHHHHhhhHHHHcCchHHHHHHHHHHHHcc
Confidence 4455667788888888888777654332 1222356788888888888888888865
No 440
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=29.40 E-value=2.9e+02 Score=25.21 Aligned_cols=14 Identities=21% Similarity=0.458 Sum_probs=7.8
Q ss_pred HHHHHHHHHHhHHh
Q 004487 493 IEEGLQYFNSMTQK 506 (749)
Q Consensus 493 ~~~a~~~~~~m~~~ 506 (749)
++.|+.+|+.+.++
T Consensus 85 LESAl~v~~~I~~E 98 (200)
T cd00280 85 LESALMVLESIEKE 98 (200)
T ss_pred HHHHHHHHHHHHHh
Confidence 35556666655544
No 441
>PF13934 ELYS: Nuclear pore complex assembly
Probab=29.35 E-value=5.1e+02 Score=24.72 Aligned_cols=114 Identities=13% Similarity=0.308 Sum_probs=65.0
Q ss_pred hcCCHHHHHHHHhhCCCCCcchH--HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHH
Q 004487 423 KSGSLKDAIQTFKEMPERNIVSW--NALISACAQNGDAQATLKSFEDMVQSGYQPDSVSLLSVLSACSHCGLIEEGLQYF 500 (749)
Q Consensus 423 ~~g~~~~A~~~~~~~~~~~~~~~--~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~ 500 (749)
-.+++++|.+.+-.- .+..| .-++.++...|+.+.|+.+++.+.-..-. ......++.+ ...+.+.+|..+-
T Consensus 90 D~~~~~~A~~~L~~p---s~~~~~~~~Il~~L~~~~~~~lAL~y~~~~~p~l~s--~~~~~~~~~~-La~~~v~EAf~~~ 163 (226)
T PF13934_consen 90 DHGDFEEALELLSHP---SLIPWFPDKILQALLRRGDPKLALRYLRAVGPPLSS--PEALTLYFVA-LANGLVTEAFSFQ 163 (226)
T ss_pred ChHhHHHHHHHhCCC---CCCcccHHHHHHHHHHCCChhHHHHHHHhcCCCCCC--HHHHHHHHHH-HHcCCHHHHHHHH
Confidence 346677777776433 32222 23777788889999999888875432222 2223333333 5568899998877
Q ss_pred HHhHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHH
Q 004487 501 NSMTQKYKLRPKKEHYASMVDILCRSGCFDEAEKLMAQMPFEPDEI 546 (749)
Q Consensus 501 ~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~ 546 (749)
+..... -....+..++..+.....-....+.+-.+|+.+...
T Consensus 164 R~~~~~----~~~~l~e~l~~~~~~~~~~~~~~~~Ll~LPl~~~EE 205 (226)
T PF13934_consen 164 RSYPDE----LRRRLFEQLLEHCLEECARSGRLDELLSLPLDEEEE 205 (226)
T ss_pred HhCchh----hhHHHHHHHHHHHHHHhhhhhHHHHHHhCCCChHHH
Confidence 655431 113466677766664443333444455556655433
No 442
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=29.16 E-value=9.7e+02 Score=27.93 Aligned_cols=164 Identities=15% Similarity=0.135 Sum_probs=75.4
Q ss_pred hHHHHHHHH-HhcCCHHHHHHHHHHHHHC----CCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHH
Q 004487 444 SWNALISAC-AQNGDAQATLKSFEDMVQS----GYQPDSVSLLSVLSACSHCGLIEEGLQYFNSMTQKYKLRPKKEHYAS 518 (749)
Q Consensus 444 ~~~~li~~~-~~~g~~~~A~~~~~~m~~~----g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~ 518 (749)
.|+++-.-. ...|++++|.++.+..... -..+..+.+..+..+..-.|++++|..+.....+. .-.-+..++..
T Consensus 459 e~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~-a~~~~~~~l~~ 537 (894)
T COG2909 459 EFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGEAAHIRGELTQALALMQQAEQM-ARQHDVYHLAL 537 (894)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhHHHHHhchHHHHHHHHHHHHHH-HHHcccHHHHH
Confidence 444443322 3456677777776665543 11223334445555556667777777665554322 11223333332
Q ss_pred HH-----HHHHHcCCHHHHH--HHHHhC-----CCCC----CHHhHHHHHHHHHhcCCHHHHHHHHHHHhcC----CCCC
Q 004487 519 MV-----DILCRSGCFDEAE--KLMAQM-----PFEP----DEIMWSSVINSCRIHKNLEFAKKAADQLFKM----EKLR 578 (749)
Q Consensus 519 li-----~~~~~~g~~~~A~--~~~~~~-----~~~p----~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~----~~~~ 578 (749)
++ ..+...|+...|. ..+... +.+| -..+...++.++.+ ++.+..-....++. .|.+
T Consensus 538 ~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~~ll~~~~r---~~~~~~ear~~~~~~~~~~~~~ 614 (894)
T COG2909 538 WSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRAQLLRAWLR---LDLAEAEARLGIEVGSVYTPQP 614 (894)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHHHH---HhhhhHHhhhcchhhhhcccch
Confidence 22 2344555332222 222211 1112 12233333444322 34444333333332 2211
Q ss_pred Cc--hhHHHHHHHHHHcCCchhHHHHHHHHHhCCC
Q 004487 579 DA--APYVAMSNIYAVAGQWESVSQVKKAMRERGV 611 (749)
Q Consensus 579 ~~--~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~ 611 (749)
-. ..+..|+.++...|+.++|...+..+.....
T Consensus 615 ~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~ 649 (894)
T COG2909 615 LLSRLALSMLAELEFLRGDLDKALAQLDELERLLL 649 (894)
T ss_pred hHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhc
Confidence 11 2223677777778888888777777765433
No 443
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=28.90 E-value=5.6e+02 Score=25.07 Aligned_cols=83 Identities=17% Similarity=0.195 Sum_probs=44.1
Q ss_pred CchhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHh
Q 004487 409 SNVFSGSALLDMYAKSGSLKDAIQTFKEMPERNIVSWNALISACAQNGDAQATLKSFEDMVQSGYQPDSVSLLSVLSACS 488 (749)
Q Consensus 409 ~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~ 488 (749)
.|+.....+...|.+.|++.+|+..|-.-..++...+-.++.-....|...++ |...-.+++ -|.
T Consensus 88 Gdp~LH~~~a~~~~~e~~~~~A~~Hfl~~~~~~~~~~~~ll~~~~~~~~~~e~--------------dlfi~RaVL-~yL 152 (260)
T PF04190_consen 88 GDPELHHLLAEKLWKEGNYYEAERHFLLGTDPSAFAYVMLLEEWSTKGYPSEA--------------DLFIARAVL-QYL 152 (260)
T ss_dssp --HHHHHHHHHHHHHTT-HHHHHHHHHTS-HHHHHHHHHHHHHHHHHTSS--H--------------HHHHHHHHH-HHH
T ss_pred CCHHHHHHHHHHHHhhccHHHHHHHHHhcCChhHHHHHHHHHHHHHhcCCcch--------------hHHHHHHHH-HHH
Confidence 46777788889999999999998877655433333332222222222222211 111111222 356
Q ss_pred ccCCHHHHHHHHHHhHHh
Q 004487 489 HCGLIEEGLQYFNSMTQK 506 (749)
Q Consensus 489 ~~g~~~~a~~~~~~m~~~ 506 (749)
..+++..|...++...++
T Consensus 153 ~l~n~~~A~~~~~~f~~~ 170 (260)
T PF04190_consen 153 CLGNLRDANELFDTFTSK 170 (260)
T ss_dssp HTTBHHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHH
Confidence 677888888877766654
No 444
>TIGR02328 conserved hypothetical protein. Members of this protein are found in a small number of taxonomically well separated species, yet are strongly conserved, suggesting lateral gene transfer. Members are found in Treponema denticola, Clostridium acetobutylicum, and several of the Firmicutes. The function of this protein is unknown.
Probab=28.22 E-value=68 Score=26.17 Aligned_cols=26 Identities=19% Similarity=0.211 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHHcCCcCCCCcc
Q 004487 640 NEIRRKIENLMQEMKKEGYKPDTSCA 665 (749)
Q Consensus 640 ~~~~~~l~~l~~~m~~~g~~pd~~~~ 665 (749)
...+..-..+..+|++.||+|++.+.
T Consensus 48 ~~L~~yH~lv~~EM~~RGY~~~~~W~ 73 (120)
T TIGR02328 48 YKLFAYHLLVMEEMATRGYHVSKQWL 73 (120)
T ss_pred HHHHHHHHHHHHHHHHcCCCCChhhc
Confidence 44555567799999999999999765
No 445
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=28.08 E-value=2.6e+02 Score=30.90 Aligned_cols=47 Identities=15% Similarity=0.180 Sum_probs=25.2
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCC--CCCCHHHHHHHHHHHhccCCH
Q 004487 447 ALISACAQNGDAQATLKSFEDMVQSG--YQPDSVSLLSVLSACSHCGLI 493 (749)
Q Consensus 447 ~li~~~~~~g~~~~A~~~~~~m~~~g--~~p~~~t~~~ll~a~~~~g~~ 493 (749)
+|..+|..+|++..+.++++.+.... -+.=...++..++...+.|.+
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf 81 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSF 81 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCc
Confidence 56666666666666666666665431 111123455555555555543
No 446
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=27.96 E-value=5.7e+02 Score=24.89 Aligned_cols=119 Identities=14% Similarity=0.129 Sum_probs=66.5
Q ss_pred hCCChhHHHHHHHHHHHCCCCcC---HHhHHHHHHHhcccCcHHHHHHHHHHHHH---hC--CCCchhHHHHHHHHHHhc
Q 004487 353 QKGNLEEALNLFIEMCRANISAD---QATFASILRASAELASLSLGKQLHSFVIR---SG--FMSNVFSGSALLDMYAKS 424 (749)
Q Consensus 353 ~~g~~~~A~~l~~~m~~~g~~p~---~~t~~~ll~~~~~~~~~~~a~~~~~~~~~---~~--~~~~~~~~~~li~~y~~~ 424 (749)
+...+++|+.-|.+..+..-.-. -..+-.++....+++++++....+.++.. +. -.-+....|++++.-+.+
T Consensus 39 ~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS 118 (440)
T KOG1464|consen 39 KEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTS 118 (440)
T ss_pred cccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhh
Confidence 34578899999988876432222 23444556667777777776665554432 11 122344556777766666
Q ss_pred CCHHHHHHHHhhCC-----CCCcchH----HHHHHHHHhcCCHHHHHHHHHHHHHC
Q 004487 425 GSLKDAIQTFKEMP-----ERNIVSW----NALISACAQNGDAQATLKSFEDMVQS 471 (749)
Q Consensus 425 g~~~~A~~~~~~~~-----~~~~~~~----~~li~~~~~~g~~~~A~~~~~~m~~~ 471 (749)
.+.+--..+++.-. ..+...| +-|-..|...|.+.+..++++++..+
T Consensus 119 ~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~S 174 (440)
T KOG1464|consen 119 KNMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQS 174 (440)
T ss_pred hhhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHH
Confidence 66655555554332 1232222 33555566666666666666666553
No 447
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=27.80 E-value=4.7e+02 Score=29.14 Aligned_cols=24 Identities=17% Similarity=0.162 Sum_probs=12.3
Q ss_pred HHHHHHHccCChHHHHHHHHHHHH
Q 004487 280 TLLSVVANKLDLQIGRQIHTQTIV 303 (749)
Q Consensus 280 ~ll~~~~~~~~~~~a~~~~~~~~~ 303 (749)
+++.+|...|++-.+.++++-...
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~ 56 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFID 56 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhc
Confidence 455555555555555555544443
No 448
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=27.68 E-value=6.4e+02 Score=25.35 Aligned_cols=24 Identities=17% Similarity=0.483 Sum_probs=10.6
Q ss_pred HHHHHHHHHhc-C-CCCcccHHHHHH
Q 004487 326 FEEAKEIFANL-S-HISTVPWTAMIS 349 (749)
Q Consensus 326 ~~~A~~~~~~~-~-~~~~~~~~~li~ 349 (749)
...+.+++..+ . +.+..+|..++.
T Consensus 56 ~~~~l~l~~~~~~~E~~~~vw~~~~~ 81 (324)
T PF11838_consen 56 YSDFLDLLEYLLPNETDYVVWSTALS 81 (324)
T ss_dssp HHHHHHHHGGG-GT--SHHHHHHHHH
T ss_pred HHHHHHHHHHhccCCCchHHHHHHHH
Confidence 34445555554 2 344445555444
No 449
>PF11525 CopK: Copper resistance protein K; InterPro: IPR021604 CopK is a periplasmic dimeric protein which is strongly up-regulated in the presence of copper, leading to a high periplasmic accumulation []. CopK has two different binding sites for Cu(I), each with a different affinity for the metal. Binding of the first Cu(I) ion induces a conformational change of CopK which involves dissociation of the dimeric apo-protein. Binding of a second Cu(I) further increases the plasticity of the protein. CopK has features that are common with functionally related proteins such as a structure consisting of an all-beta fold and a methionine-rich Cu(I) binding site []. ; PDB: 3N7E_B 3N7D_B 3DSP_A 3DSO_A 2K0Q_A 2KM0_A 2LEL_A.
Probab=27.58 E-value=23 Score=25.72 Aligned_cols=20 Identities=35% Similarity=0.546 Sum_probs=16.3
Q ss_pred ceEEEccCCccccccccccC
Q 004487 725 REITVRDSSRFHHFKDGFCS 744 (749)
Q Consensus 725 ~~~~~~d~~~~h~~~~g~~s 744 (749)
..|-|.|....|+|+||+-+
T Consensus 8 ksi~LkDGstvyiFKDGKMa 27 (73)
T PF11525_consen 8 KSIPLKDGSTVYIFKDGKMA 27 (73)
T ss_dssp EEEEBTTSEEEEEETTS-EE
T ss_pred eeEecCCCCEEEEEcCCcee
Confidence 46778999999999999865
No 450
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=26.56 E-value=3e+02 Score=24.05 Aligned_cols=41 Identities=7% Similarity=0.115 Sum_probs=16.5
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc
Q 004487 449 ISACAQNGDAQATLKSFEDMVQSGYQPDSVSLLSVLSACSH 489 (749)
Q Consensus 449 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~ 489 (749)
+..+.+.++.-.|.++++++.+.+...+..|....|..+..
T Consensus 27 l~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e 67 (145)
T COG0735 27 LELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLEE 67 (145)
T ss_pred HHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHH
Confidence 33333333334444444444444433333333333333333
No 451
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=26.50 E-value=2e+02 Score=25.97 Aligned_cols=62 Identities=15% Similarity=0.113 Sum_probs=32.7
Q ss_pred HHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHHcCCHHH
Q 004487 468 MVQSGYQPDSVSLLSVLSACSHCGLIEEGLQYFNSMTQKYKLRPKKEHYASMVDILCRSGCFDE 531 (749)
Q Consensus 468 m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~ 531 (749)
+.+.|++++..-. .++......+..-.|.++++.+.+. +..++..+.---++.+.+.|-+.+
T Consensus 17 L~~~GlR~T~qR~-~IL~~l~~~~~hlSa~eI~~~L~~~-~~~is~aTVYRtL~~L~e~Glv~~ 78 (169)
T PRK11639 17 CAQRNVRLTPQRL-EVLRLMSLQPGAISAYDLLDLLREA-EPQAKPPTVYRALDFLLEQGFVHK 78 (169)
T ss_pred HHHcCCCCCHHHH-HHHHHHHhcCCCCCHHHHHHHHHhh-CCCCCcchHHHHHHHHHHCCCEEE
Confidence 3445655554422 3333333344455677777777654 444444444444566777776654
No 452
>PF02847 MA3: MA3 domain; InterPro: IPR003891 This entry represents the MI domain (after MA-3 and eIF4G), it is a protein-protein interaction module of ~130 amino acids [, , ]. It appears in several translation factors and is found in: One copy in plant and animal eIF4G 1 and 2 (DAP-5/NAT1/p97) Two copies in the animal programmed cell death protein 4 (PDCD4) or MA-3 that is induced during programmed cell death and inhibits neoplastic transformation Four tandem-repeated copies in a group of uncharacterised plant proteins The MI domain consists of seven alpha-helices, which pack into a globular form. The packing arrangement consists of repeating pairs of antiparallel helices packed one upon the other such that a superhelical axis is generated perpendicular to the alpha-helical axes []. The MI domain has also been named MA3 domain.; PDB: 2ION_A 2IOL_B 2NSZ_A 3EIQ_C 2HM8_A 2KZT_B 2IOS_A 2RG8_B 2ZU6_E 3EIJ_A ....
Probab=25.93 E-value=2.1e+02 Score=23.50 Aligned_cols=21 Identities=29% Similarity=0.441 Sum_probs=9.6
Q ss_pred HHHHHHhcCCHHHHHHHHHhc
Q 004487 316 LVDMYAKCGRFEEAKEIFANL 336 (749)
Q Consensus 316 li~~~~~~g~~~~A~~~~~~~ 336 (749)
++.-|...|+.++|...+.++
T Consensus 8 ~l~ey~~~~d~~ea~~~l~el 28 (113)
T PF02847_consen 8 ILMEYFSSGDVDEAVECLKEL 28 (113)
T ss_dssp HHHHHHHHT-HHHHHHHHHHT
T ss_pred HHHHHhcCCCHHHHHHHHHHh
Confidence 333444445555555555444
No 453
>PF10155 DUF2363: Uncharacterized conserved protein (DUF2363); InterPro: IPR019312 This entry represents a region of 120 amino acids in proteins conserved from plants to humans. Their function is not known.
Probab=25.50 E-value=4.2e+02 Score=22.52 Aligned_cols=114 Identities=9% Similarity=0.065 Sum_probs=0.0
Q ss_pred CChHHHHHHHhcCCCCCcchHHHHHHHHHcCCChhHHHHHHHHhHhcCCCCCCcc----------hHHHHHHhcCCCCCh
Q 004487 20 GNLATARELFNSMVDRTAVSWTILIGGYSQKNQFREAFKLFVDMRTDGGSDPDYV----------TFATLLSGCSEPDTA 89 (749)
Q Consensus 20 g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~g~~p~~~----------~~~~ll~~~~~~~~~ 89 (749)
.++.-|.+++-+....+ .....++.+....-.-.++++..++... ...|..+ +...+-......+..
T Consensus 3 nNp~IA~~~l~~l~~s~--~~~~yld~lv~~~~sl~s~EvVn~L~~~-~~~p~efl~~yI~~cI~~ce~~kd~~~q~R~V 79 (126)
T PF10155_consen 3 NNPNIAIEILVKLINSP--NFKEYLDVLVSMDMSLHSMEVVNRLTTS-FSLPQEFLHMYISNCIKSCESIKDKYMQNRLV 79 (126)
T ss_pred CcHHHHHHHHHHHcCCc--hHHHHHHHHHcCCCchhHHHHHHHHHcC-CCCcHHHHHHHHHHHHHHHHhhcccccccchh
Q ss_pred HHHHHHHHHHHHhCCCCchhHHHHHHHHhHcCCChhHHHHHHccCCC
Q 004487 90 NELIQVHADIIKFGYNSILIICNSLVDSYCKIRCLDLARRVFKEMPQ 136 (749)
Q Consensus 90 ~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 136 (749)
+..-.+...+++.++......+..+=..+.+-.+..+|..+|+-+.+
T Consensus 80 Rlvcvfl~sLir~~i~~~~~l~~evq~FClefs~i~Ea~~L~kllk~ 126 (126)
T PF10155_consen 80 RLVCVFLQSLIRNKIIDVEDLFIEVQAFCLEFSRIKEASALFKLLKN 126 (126)
T ss_pred hhHHHHHHHHHHcCCCchHHHHhhHHHHHHHHccHHHHHHHHHHHhC
No 454
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=25.41 E-value=2.4e+02 Score=27.40 Aligned_cols=17 Identities=12% Similarity=0.202 Sum_probs=7.4
Q ss_pred HhccCCHHHHHHHHHHh
Q 004487 487 CSHCGLIEEGLQYFNSM 503 (749)
Q Consensus 487 ~~~~g~~~~a~~~~~~m 503 (749)
|.+.|++++|.++|+.+
T Consensus 188 y~~~g~~~~A~~~l~~~ 204 (247)
T PF11817_consen 188 YFRLGDYDKALKLLEPA 204 (247)
T ss_pred HHHCCCHHHHHHHHHHH
Confidence 44444444444444433
No 455
>PF12069 DUF3549: Protein of unknown function (DUF3549); InterPro: IPR021936 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are about 340 amino acids in length. This protein has a conserved LDE sequence motif.
Probab=25.39 E-value=7.4e+02 Score=25.31 Aligned_cols=93 Identities=16% Similarity=0.181 Sum_probs=55.1
Q ss_pred HHHHHHhcCCHHHHHHHHHhcCCCCcccHHHHHHHHHhCCChhHH-HHHHHHHHHCCCCcCHHhHHHHHHHhcccCcHHH
Q 004487 316 LVDMYAKCGRFEEAKEIFANLSHISTVPWTAMISAYVQKGNLEEA-LNLFIEMCRANISADQATFASILRASAELASLSL 394 (749)
Q Consensus 316 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A-~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~ 394 (749)
+.+.+++.++.+.+..+-+.+..-...+..++..++-...-.+.. ..+++..... ||..+...++++.+.......
T Consensus 172 IAD~~aRl~~~~~~~~l~~al~~lP~~vl~aL~~~LEh~~l~~~l~~~l~~~~~~~---~d~~~~~a~lRAls~~~~~~~ 248 (340)
T PF12069_consen 172 IADICARLDQEDNAQLLRKALPHLPPEVLYALCGCLEHQPLPDKLAEALLERLEQA---PDLELLSALLRALSSAPASDL 248 (340)
T ss_pred HHHHHHHhcccchHHHHHHHHhhCChHHHHHHHHHhcCCCCCHHHHHHHHHHHHcC---CCHHHHHHHHHHHcCCCchhH
Confidence 556666666666665555555554444455555555444433333 3334444333 888999999999888777776
Q ss_pred HHHHHHHHHHhCCCCch
Q 004487 395 GKQLHSFVIRSGFMSNV 411 (749)
Q Consensus 395 a~~~~~~~~~~~~~~~~ 411 (749)
....+..+.......+.
T Consensus 249 ~~~~i~~~L~~~~~~~~ 265 (340)
T PF12069_consen 249 VAILIDALLQSPRLCHP 265 (340)
T ss_pred HHHHHHHHhcCcccCCh
Confidence 66656666555433333
No 456
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=24.93 E-value=4.3e+02 Score=29.55 Aligned_cols=28 Identities=18% Similarity=0.157 Sum_probs=20.2
Q ss_pred cchhHHHHHHHHcCCChHHHHHHHhcCCC
Q 004487 6 TVSTNMLISGYVKSGNLATARELFNSMVD 34 (749)
Q Consensus 6 ~~~~~~ll~~~~~~g~~~~A~~~f~~~~~ 34 (749)
+.-|+ .+..+.-+|.++.|..++.....
T Consensus 149 p~FW~-~v~~lvlrG~~~~a~~lL~~~s~ 176 (566)
T PF07575_consen 149 PDFWD-YVQRLVLRGLFDQARQLLRLHSS 176 (566)
T ss_dssp HHHHH-HHHHHHHTT-HHHHHHHH-TTTT
T ss_pred hhHHH-HHHHHHHcCCHHHHHHHHHhccc
Confidence 56676 67778888999999999966543
No 457
>PF14044 NETI: NETI protein
Probab=24.89 E-value=67 Score=22.49 Aligned_cols=18 Identities=44% Similarity=0.731 Sum_probs=14.6
Q ss_pred HHHHHHHHHHcCCcCCCC
Q 004487 646 IENLMQEMKKEGYKPDTS 663 (749)
Q Consensus 646 l~~l~~~m~~~g~~pd~~ 663 (749)
+.+-+.+|++.||.|-..
T Consensus 10 I~~CL~RM~~eGY~PvrR 27 (57)
T PF14044_consen 10 ISDCLARMKKEGYMPVRR 27 (57)
T ss_pred HHHHHHHHHHcCCCceee
Confidence 567788999999998654
No 458
>cd08326 CARD_CASP9 Caspase activation and recruitment domain of Caspase-9. Caspase activation and recruitment domain (CARD) similar to that found in caspase-9 (CASP9, MCH6, APAF3), which interacts with the CARD of apoptotic protease-activating factor 1 (APAF-1). Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Initiator caspases are the first to be activated following death- or inflammation-inducing signals. Caspase-9 is the initiator caspase associated with the intrinsic or mitochondrial pathway of apoptosis, induced by many pro-apoptotic signals. Together with APAF-1, it forms the heptameric 'apoptosome' in response to the release of cytochrome c from mitochondria. Activated caspase-9 cleaves and activates downstream effector caspases, like caspase-3, caspase-6, and caspase-7, resulting in apoptosis. In general, CARDs are death domains (DDs) associated with caspases. They are known to be important in the signaling pathways for apopt
Probab=24.44 E-value=2.1e+02 Score=22.22 Aligned_cols=59 Identities=12% Similarity=0.224 Sum_probs=36.4
Q ss_pred HHHHHHHHhCCCCchhHHHHHHHHhHcCCChhHHHHHHccCCCCCcchHHHHHHHHHhCCChh
Q 004487 94 QVHADIIKFGYNSILIICNSLVDSYCKIRCLDLARRVFKEMPQKDSVSFNALITGFAKEGLNE 156 (749)
Q Consensus 94 ~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~ 156 (749)
.+++.+.+.|+- +..-.-...+.....+.|.++++.++.++..+|.++..++-..|...
T Consensus 20 ~v~~~L~~~~Vl----t~~~~e~I~~~~tr~~q~~~LLd~L~~RG~~AF~~F~~aL~~~~~~~ 78 (84)
T cd08326 20 YLWDHLLSRGVF----TPDMIEEIQAAGSRRDQARQLLIDLETRGKQAFPAFLSALRETGQTD 78 (84)
T ss_pred HHHHHHHhcCCC----CHHHHHHHHcCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCchH
Confidence 455666666532 11222222334456777888888888888888888888777766544
No 459
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=23.60 E-value=6.6e+02 Score=24.12 Aligned_cols=68 Identities=10% Similarity=0.244 Sum_probs=39.1
Q ss_pred HHHHcCCHHHHHHHHHhC---CCCCCHHhHHH---HHH--HHHhc-CCHHHHHHHHHHHhcCCCCC-CchhHHHHHHH
Q 004487 522 ILCRSGCFDEAEKLMAQM---PFEPDEIMWSS---VIN--SCRIH-KNLEFAKKAADQLFKMEKLR-DAAPYVAMSNI 589 (749)
Q Consensus 522 ~~~~~g~~~~A~~~~~~~---~~~p~~~~~~~---ll~--~~~~~-g~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~ 589 (749)
.-+..|++.+|+++|++. .+..+..-|.. ++. .|.-. .|.-.+...+++-.+++|.. ++.-+..|-.+
T Consensus 163 yaa~leqY~~Ai~iyeqva~~s~~n~LLKys~KdyflkAgLChl~~~D~v~a~~ALeky~~~dP~F~dsREckflk~L 240 (288)
T KOG1586|consen 163 YAAQLEQYSKAIDIYEQVARSSLDNNLLKYSAKDYFLKAGLCHLCKADEVNAQRALEKYQELDPAFTDSRECKFLKDL 240 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHhHhcccHHHHHHHHHHHHhcCCcccccHHHHHHHHH
Confidence 344567778888888776 23333333332 222 24333 67777888889999998822 33334444433
No 460
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=23.58 E-value=4e+02 Score=25.78 Aligned_cols=55 Identities=20% Similarity=0.213 Sum_probs=34.4
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHH----CC-CCCCHHHHHHHHHHHhccCCHHHHHHHHHH
Q 004487 448 LISACAQNGDAQATLKSFEDMVQ----SG-YQPDSVSLLSVLSACSHCGLIEEGLQYFNS 502 (749)
Q Consensus 448 li~~~~~~g~~~~A~~~~~~m~~----~g-~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~ 502 (749)
|..-|...|++++|+++|+.+.. .| ..+...+...++.++.+.|+.+....+--+
T Consensus 184 ~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~le 243 (247)
T PF11817_consen 184 MAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLE 243 (247)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 55667778888888888877642 22 223344555666666677777766655433
No 461
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=23.53 E-value=2.9e+02 Score=27.62 Aligned_cols=52 Identities=15% Similarity=0.121 Sum_probs=30.8
Q ss_pred HHHHHHcCCChHHHHHHHccCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHH
Q 004487 215 LLDLYSKHDCVVEARKLFGEMPEVDGVSYNVMITCYAWNEQYKESLKLFRELQF 268 (749)
Q Consensus 215 Li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 268 (749)
++..+.+..++......+..+ ..+..-...+..+...|++..|++++.+...
T Consensus 104 Il~~~rkr~~l~~ll~~L~~i--~~v~~~~~~l~~ll~~~dy~~Al~li~~~~~ 155 (291)
T PF10475_consen 104 ILRLQRKRQNLKKLLEKLEQI--KTVQQTQSRLQELLEEGDYPGALDLIEECQQ 155 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 344444444444444444443 2233344566777888999999998887754
No 462
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=23.46 E-value=7.1e+02 Score=24.38 Aligned_cols=111 Identities=11% Similarity=0.020 Sum_probs=53.6
Q ss_pred HHHhCCChhHHHHHHHHH----HHCCCCCChhhHHHHHHHHhCCCC-----hHHHHHHHHHHHHcCC--CCChhHHHHHH
Q 004487 148 GFAKEGLNEEAIKLFVEM----QHLGFKPSDFTFAAALSAGVGLAD-----IALGRQVHAFVVKTNF--VENVFVANALL 216 (749)
Q Consensus 148 ~~~~~g~~~~A~~l~~~m----~~~g~~p~~~t~~~ll~a~~~~~~-----~~~a~~~~~~~~~~g~--~~~~~~~~~Li 216 (749)
.+.+.|+...|-++-..| .+.++++|......++......+. .....+...+- +.|- .-|......+.
T Consensus 19 ~ll~~~Q~~sg~DL~~lliev~~~~~~~~~~~~~~rl~~l~~~~~~~~p~r~~fi~~ai~WS-~~~~~~~Gdp~LH~~~a 97 (260)
T PF04190_consen 19 ILLKHGQYGSGADLALLLIEVYEKSEDPVDEESIARLIELISLFPPEEPERKKFIKAAIKWS-KFGSYKFGDPELHHLLA 97 (260)
T ss_dssp HHHHTT-HHHHHHHHHHHHHHHHHTT---SHHHHHHHHHHHHHS-TT-TTHHHHHHHHHHHH-HTSS-TT--HHHHHHHH
T ss_pred HHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHH-ccCCCCCCCHHHHHHHH
Confidence 344555555544443333 234555565554444444433321 22233333344 3332 23667788889
Q ss_pred HHHHcCCChHHHHHHHccCCCCCcchHHHHHHHHHhcCChhHH
Q 004487 217 DLYSKHDCVVEARKLFGEMPEVDGVSYNVMITCYAWNEQYKES 259 (749)
Q Consensus 217 ~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A 259 (749)
..|.+.|++.+|+..|-.-.+++...+-.++......|...++
T Consensus 98 ~~~~~e~~~~~A~~Hfl~~~~~~~~~~~~ll~~~~~~~~~~e~ 140 (260)
T PF04190_consen 98 EKLWKEGNYYEAERHFLLGTDPSAFAYVMLLEEWSTKGYPSEA 140 (260)
T ss_dssp HHHHHTT-HHHHHHHHHTS-HHHHHHHHHHHHHHHHHTSS--H
T ss_pred HHHHhhccHHHHHHHHHhcCChhHHHHHHHHHHHHHhcCCcch
Confidence 9999999999999988665544444443344444444544444
No 463
>PF07064 RIC1: RIC1; InterPro: IPR009771 This entry represents RIC1 (Ribosomal control protein1) and has been identified in yeast as a Golgi protein involved in retrograde transport to the cis-Golgi network. It forms a heterodimer with Rgp1 and functions as a guanyl-nucleotide exchange factor [] which activates YPT6 by exchanging bound GDP for free GTP. RIC1 is thereby required for efficient fusion of endosome-derived vesicles with the Golgi. The RIC1-RGP1 complex participates in the recycling of SNC1, presumably by mediating fusion of endosomal vesicles with the Golgi compartment and may also be indirectly involved in the transcription of both ribosomal protein genes and ribosomal RNA [, , ].
Probab=23.13 E-value=7.2e+02 Score=24.34 Aligned_cols=83 Identities=13% Similarity=0.138 Sum_probs=53.3
Q ss_pred HHHHcCCHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCC------CchhHHHHHHHHHHcCC
Q 004487 522 ILCRSGCFDEAEKLMAQMPFEPDEIMWSSVINSCRIHKNLEFAKKAADQLFKMEKLR------DAAPYVAMSNIYAVAGQ 595 (749)
Q Consensus 522 ~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~------~~~~~~~l~~~~~~~g~ 595 (749)
.+.|.=+...=..+|+..+ .|. .|..-|.+.|+++.|-..+--+...+... +...-..|.......|+
T Consensus 162 ~C~RKtE~~~W~~LF~~lg-~P~-----dLf~~cl~~~~l~tAa~yLlVl~~~e~~~~~~~~~~~~~al~LL~~a~~~~~ 235 (258)
T PF07064_consen 162 NCARKTEVRYWPYLFDYLG-SPR-----DLFEECLENGNLKTAASYLLVLQNLEGSSVVKDEESRQCALRLLVMALESGD 235 (258)
T ss_pred HHHHhhHHHHHHHHHHhcC-CHH-----HHHHHHHHcCcHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHHHHHHHhccc
Confidence 3344333333344555554 232 47778888899988887777666555412 23344466777788999
Q ss_pred chhHHHHHHHHHhCC
Q 004487 596 WESVSQVKKAMRERG 610 (749)
Q Consensus 596 ~~~a~~~~~~m~~~g 610 (749)
|+-+.++.+-++.-+
T Consensus 236 w~Lc~eL~RFL~~ld 250 (258)
T PF07064_consen 236 WDLCFELVRFLKALD 250 (258)
T ss_pred HHHHHHHHHHHHHhC
Confidence 999999988886544
No 464
>PF12069 DUF3549: Protein of unknown function (DUF3549); InterPro: IPR021936 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are about 340 amino acids in length. This protein has a conserved LDE sequence motif.
Probab=23.12 E-value=8.2e+02 Score=25.01 Aligned_cols=95 Identities=15% Similarity=0.113 Sum_probs=54.7
Q ss_pred HHHHHhHcCCChhHHHHHHccCCCCCcchHHHHHHHHHhCCChhHHHH-HHHHHHHCCCCCChhhHHHHHHHHhCCCChH
Q 004487 113 SLVDSYCKIRCLDLARRVFKEMPQKDSVSFNALITGFAKEGLNEEAIK-LFVEMQHLGFKPSDFTFAAALSAGVGLADIA 191 (749)
Q Consensus 113 ~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~-l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~ 191 (749)
-+.+.+++.++-+.+..+-+.++.--.....++..++-...-.+...+ +++..... ||..+...++++.+......
T Consensus 171 GIAD~~aRl~~~~~~~~l~~al~~lP~~vl~aL~~~LEh~~l~~~l~~~l~~~~~~~---~d~~~~~a~lRAls~~~~~~ 247 (340)
T PF12069_consen 171 GIADICARLDQEDNAQLLRKALPHLPPEVLYALCGCLEHQPLPDKLAEALLERLEQA---PDLELLSALLRALSSAPASD 247 (340)
T ss_pred HHHHHHHHhcccchHHHHHHHHhhCChHHHHHHHHHhcCCCCCHHHHHHHHHHHHcC---CCHHHHHHHHHHHcCCCchh
Confidence 345666777766666666555555333345555555544443333333 33333333 78888888888888877776
Q ss_pred HHHHHHHHHHHcCCCCChh
Q 004487 192 LGRQVHAFVVKTNFVENVF 210 (749)
Q Consensus 192 ~a~~~~~~~~~~g~~~~~~ 210 (749)
.....+..++......+..
T Consensus 248 ~~~~~i~~~L~~~~~~~~e 266 (340)
T PF12069_consen 248 LVAILIDALLQSPRLCHPE 266 (340)
T ss_pred HHHHHHHHHhcCcccCChH
Confidence 6666566666554333333
No 465
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=23.03 E-value=1.4e+02 Score=29.42 Aligned_cols=51 Identities=12% Similarity=0.108 Sum_probs=42.0
Q ss_pred HHhcCCHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHcCCchhHHHHHHHH
Q 004487 555 CRIHKNLEFAKKAADQLFKMEKLRDAAPYVAMSNIYAVAGQWESVSQVKKAM 606 (749)
Q Consensus 555 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 606 (749)
.++.|+.|+|..+|+.++.+.| .++....-++.......+.-+|.+++-+.
T Consensus 126 ~~~~Gk~ekA~~lfeHAlalaP-~~p~~L~e~G~f~E~~~~iv~ADq~Y~~A 176 (472)
T KOG3824|consen 126 SRKDGKLEKAMTLFEHALALAP-TNPQILIEMGQFREMHNEIVEADQCYVKA 176 (472)
T ss_pred HHhccchHHHHHHHHHHHhcCC-CCHHHHHHHhHHHHhhhhhHhhhhhhhee
Confidence 4678999999999999999999 99999888887777777777777666543
No 466
>cd08326 CARD_CASP9 Caspase activation and recruitment domain of Caspase-9. Caspase activation and recruitment domain (CARD) similar to that found in caspase-9 (CASP9, MCH6, APAF3), which interacts with the CARD of apoptotic protease-activating factor 1 (APAF-1). Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Initiator caspases are the first to be activated following death- or inflammation-inducing signals. Caspase-9 is the initiator caspase associated with the intrinsic or mitochondrial pathway of apoptosis, induced by many pro-apoptotic signals. Together with APAF-1, it forms the heptameric 'apoptosome' in response to the release of cytochrome c from mitochondria. Activated caspase-9 cleaves and activates downstream effector caspases, like caspase-3, caspase-6, and caspase-7, resulting in apoptosis. In general, CARDs are death domains (DDs) associated with caspases. They are known to be important in the signaling pathways for apopt
Probab=22.86 E-value=3.3e+02 Score=21.19 Aligned_cols=39 Identities=18% Similarity=0.268 Sum_probs=26.7
Q ss_pred hcCCHHHHHHHHhhCCCCCcchHHHHHHHHHhcCCHHHH
Q 004487 423 KSGSLKDAIQTFKEMPERNIVSWNALISACAQNGDAQAT 461 (749)
Q Consensus 423 ~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 461 (749)
...+.++|.++++.++.+....|.++..++...|+..-|
T Consensus 42 ~~tr~~q~~~LLd~L~~RG~~AF~~F~~aL~~~~~~~LA 80 (84)
T cd08326 42 AGSRRDQARQLLIDLETRGKQAFPAFLSALRETGQTDLA 80 (84)
T ss_pred CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCchHHH
Confidence 445567777777777777777777777777776655443
No 467
>KOG3507 consensus DNA-directed RNA polymerase, subunit RPB7.0 [Transcription]
Probab=22.61 E-value=27 Score=24.40 Aligned_cols=12 Identities=25% Similarity=0.625 Sum_probs=8.7
Q ss_pred cccCcchhHHHH
Q 004487 706 LRACTDCHAAIK 717 (749)
Q Consensus 706 l~~c~~~h~~~~ 717 (749)
.-+|+|||.--.
T Consensus 20 iYiCgdC~~en~ 31 (62)
T KOG3507|consen 20 IYICGDCGQENT 31 (62)
T ss_pred EEEecccccccc
Confidence 468999996433
No 468
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=22.45 E-value=2.3e+02 Score=20.80 Aligned_cols=48 Identities=17% Similarity=0.140 Sum_probs=25.8
Q ss_pred CCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHh
Q 004487 440 RNIVSWNALISACAQNGDAQATLKSFEDMVQSGYQPDSVSLLSVLSACS 488 (749)
Q Consensus 440 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~ 488 (749)
+....++.++..++...-.++++..+.++...|. .+..+|.--.+.++
T Consensus 6 ~~~~l~~Ql~el~Aed~AieDtiy~L~~al~~g~-I~~d~~lK~vR~La 53 (65)
T PF09454_consen 6 AEDPLSNQLYELVAEDHAIEDTIYYLDRALQRGS-IDLDTFLKQVRSLA 53 (65)
T ss_dssp -SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS-S-HHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHH
Confidence 4445566666666666666666666666666653 33444444444333
No 469
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=22.33 E-value=1e+03 Score=25.87 Aligned_cols=38 Identities=3% Similarity=-0.106 Sum_probs=20.9
Q ss_pred ChhhHHHHHHHHhCCCChHHHHHHHHHHHHcCCCCChh
Q 004487 173 SDFTFAAALSAGVGLADIALGRQVHAFVVKTNFVENVF 210 (749)
Q Consensus 173 ~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~ 210 (749)
+...+..+++++...+....+..+++.+++.|..|..+
T Consensus 247 ~~~~~~~l~~si~~~d~~~~al~~l~~l~~~G~d~~~~ 284 (484)
T PRK14956 247 GIEFLTSFIKSLIDPDNHSKSLEILESLYQEGQDIYKF 284 (484)
T ss_pred CHHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCCHHHH
Confidence 44444555555555444555666666666666555444
No 470
>COG2178 Predicted RNA-binding protein of the translin family [Translation, ribosomal structure and biogenesis]
Probab=21.88 E-value=6.4e+02 Score=23.33 Aligned_cols=50 Identities=12% Similarity=0.159 Sum_probs=27.3
Q ss_pred HhcCCHHHHHHHHhhCCC------CCcchHHHHHH-HHHhcCC--HHHHHHHHHHHHHC
Q 004487 422 AKSGSLKDAIQTFKEMPE------RNIVSWNALIS-ACAQNGD--AQATLKSFEDMVQS 471 (749)
Q Consensus 422 ~~~g~~~~A~~~~~~~~~------~~~~~~~~li~-~~~~~g~--~~~A~~~~~~m~~~ 471 (749)
...|++++|.+-++.+.+ .-...|+.+.. +++.++. +-+|.-++.-....
T Consensus 40 ~H~~~~eeA~~~l~~a~~~v~~Lk~~l~~~pel~~ag~~~~a~QEyvEA~~l~~~l~~~ 98 (204)
T COG2178 40 LHRGDFEEAEKKLKKASEAVEKLKRLLAGFPELYFAGFVTTALQEYVEATLLYSILKDG 98 (204)
T ss_pred HHhccHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhcchHHHHHHHHHHHHHHhcC
Confidence 344666666666665542 23345555554 5666654 44666666655543
No 471
>PF04090 RNA_pol_I_TF: RNA polymerase I specific initiation factor; InterPro: IPR007224 The RNA polymerase I specific transcription initiation factor Rrn11 is a member of a multiprotein complex essential for the initiation of transcription by RNA polymerase I. Binding to the DNA template is dependent on the initial binding of other factors [].
Probab=21.51 E-value=6.7e+02 Score=23.37 Aligned_cols=91 Identities=12% Similarity=0.139 Sum_probs=48.6
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCchh-HHHHHHHHHHcCCchhHHHHHHHHHhCCCccCCceeEEEeCCE
Q 004487 547 MWSSVINSCRIHKNLEFAKKAADQLFKMEKLRDAAP-YVAMSNIYAVAGQWESVSQVKKAMRERGVRKVTAYSWVELKSK 625 (749)
Q Consensus 547 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~s~~~~~~~ 625 (749)
....++..|...||++.|-++|--++...+ .|... +-.=+.++.+.+.-....++++.|...=...........-...
T Consensus 43 ~L~~lLh~~llr~d~~rA~Raf~lLiR~~~-VDiR~~W~iG~eIL~~~~~~~~~~~fl~~l~~~y~~~~~~~~~~~~~~~ 121 (199)
T PF04090_consen 43 VLTDLLHLCLLRGDWDRAYRAFGLLIRCPE-VDIRSLWGIGAEILMRRGEQNSELEFLEWLISFYPSRKAFNQYYNRRII 121 (199)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHcCCC-CChHhcchHHHHHHHcCCCcchHHHHHHHHHHHHHHhhhccchhhhhcc
Confidence 455677777777788888877777777666 44333 3333345555555555446666664321111000000111123
Q ss_pred EEEEEeCCCCCcC
Q 004487 626 VHVFTANDELHPQ 638 (749)
Q Consensus 626 ~~~f~~~~~~~~~ 638 (749)
.+.|..|...|..
T Consensus 122 ~pvfrsGs~t~tp 134 (199)
T PF04090_consen 122 APVFRSGSRTHTP 134 (199)
T ss_pred cccccCCCcccch
Confidence 4778888777743
No 472
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=21.42 E-value=5.1e+02 Score=21.96 Aligned_cols=58 Identities=16% Similarity=0.259 Sum_probs=39.0
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHHHcCCHHHHHHHHHh
Q 004487 478 VSLLSVLSACSHCGLIEEGLQYFNSMTQKYKLRPK-KEHYASMVDILCRSGCFDEAEKLMAQ 538 (749)
Q Consensus 478 ~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~ 538 (749)
.-|..+--.|+..-. .+.++|+.|..+ |+.-. ...|......+...|++++|.++++.
T Consensus 66 ~RylkiWi~ya~~~~--~~~~if~~l~~~-~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~ 124 (126)
T PF08311_consen 66 ERYLKIWIKYADLSS--DPREIFKFLYSK-GIGTKLALFYEEWAEFLEKRGNFKKADEIYQL 124 (126)
T ss_dssp HHHHHHHHHHHTTBS--HHHHHHHHHHHH-TTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcc--CHHHHHHHHHHc-CccHHHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 333333333444333 888889888866 66554 56778888888899999999988864
No 473
>PF02607 B12-binding_2: B12 binding domain; InterPro: IPR003759 Cobalamin-dependent methionine synthase (2.1.1.13 from EC) is a large modular protein that catalyses methyl transfer from methyltetrahydrofolate (CH3-H4folate) to homocysteine. During the catalytic cycle, it supports three distinct methyl transfer reactions, each involving the cobalamin (vitamin B12) cofactor and a substrate bound to its own functional unit []. The cobalamin cofactor plays an essential role in this reaction, accepting the methyl group from CH3-H4folate to form methylcob(III)alamin, and in turn donating the methyl group to homocysteine to generate methionine and cob(I)alamin. Methionine synthase is a large enzyme composed of four structurally and functionally distinct modules: the first two modules bind homocysteine and CH3-H4folate, the third module binds the cobalamin cofactor and the C-terminal module binds S-adenosylmethionine. The cobalamin-binding module is composed of two structurally distinct domains: a 4-helical bundle cap domain (residues 651-740 in the Escherichia coli enzyme) and an alpha/beta B12-binding domain (residues 741-896) (IPR006158 from INTERPRO). The 4-helical bundle forms a cap over the alpha/beta domain, which acts to shield the methyl ligand of cobalamin from solvent []. Furthermore, in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO). The alpha/beta domain is a common cobalamin-binding motif, whereas the 4-helical bundle domain with its methyl cap is a distinctive feature of methionine synthases. This entry represents the 4-helical bundle cap domain. This domain is also present in other shorter proteins that bind to B12, and is always found N terminus to the alpha/beta B12-binding domain.; GO: 0008705 methionine synthase activity, 0031419 cobalamin binding, 0046872 metal ion binding, 0009086 methionine biosynthetic process; PDB: 3EZX_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 2I2X_P.
Probab=21.24 E-value=1.5e+02 Score=22.35 Aligned_cols=39 Identities=21% Similarity=0.395 Sum_probs=29.0
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccC
Q 004487 453 AQNGDAQATLKSFEDMVQSGYQPDSVSLLSVLSACSHCG 491 (749)
Q Consensus 453 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g 491 (749)
...|+.+.+.+++++..+.|..|.......+.-+....|
T Consensus 12 l~~~d~~~~~~~~~~~l~~g~~~~~i~~~~l~p~m~~iG 50 (79)
T PF02607_consen 12 LLAGDEEEAEALLEEALAQGYPPEDIIEEILMPAMEEIG 50 (79)
T ss_dssp HHTT-CCHHHHHHHHHHHCSSSTTHHHHHTHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 446888899999999998888888877766666655444
No 474
>TIGR02414 pepN_proteo aminopeptidase N, Escherichia coli type. The M1 family of zinc metallopeptidases contains a number of distinct, well-separated clades of proteins with aminopeptidase activity. Several are designated aminopeptidase N, EC 3.4.11.2, after the Escherichia coli enzyme, suggesting a similar activity profile. This family consists of all aminopeptidases closely related to E. coli PepN and presumed to have similar (not identical) function. Nearly all are found in Proteobacteria, but members are found also in Cyanobacteria, plants, and apicomplexan parasites. This family differs greatly in sequence from the family of aminopeptidases typified by Streptomyces lividans PepN (TIGR02412), from the membrane bound aminopeptidase N family in animals, etc.
Probab=21.22 E-value=1.4e+03 Score=27.09 Aligned_cols=152 Identities=15% Similarity=0.137 Sum_probs=78.2
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCh-HHHHHHHHHHH
Q 004487 446 NALISACAQNGDAQATLKSFEDMVQSGYQPDSVSLLSVLSACSHCGLIEEGLQYFNSMTQKYKLRPKK-EHYASMVDILC 524 (749)
Q Consensus 446 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~-~~~~~li~~~~ 524 (749)
|..+.-++..++.+......++..+.. |-.--.+-|.++.+.+. .+....++..-+++.-.|-+ .-|-++...-.
T Consensus 676 n~~l~~l~~~~~~~~~~~~~~~~~~a~---~mtd~~~al~~l~~~~~-~~~~~~l~~f~~~~~~~~lv~~kwf~~qa~~~ 751 (863)
T TIGR02414 676 NACLSYLSAADDAEIRNLALEQFKSAD---NMTDRLAALSALVHFES-DFRERALAAFYQKWKDDPLVMDKWFALQATSP 751 (863)
T ss_pred HHHHHHHHhCCChhHHHHHHHHHHhCC---CHHHHHHHHHHHhcCCC-hhHHHHHHHHHHHHCCCchhHHHHHHHHhCCC
Confidence 444444455554433333334444432 22223334444443333 22223333333333333432 22333322222
Q ss_pred HcCCHHHHHHHHHhCCCCC-CHHhHHHHHHHHHhcCC-------HHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHcCCc
Q 004487 525 RSGCFDEAEKLMAQMPFEP-DEIMWSSVINSCRIHKN-------LEFAKKAADQLFKMEKLRDAAPYVAMSNIYAVAGQW 596 (749)
Q Consensus 525 ~~g~~~~A~~~~~~~~~~p-~~~~~~~ll~~~~~~g~-------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 596 (749)
..+-++...++.+.-.+.+ ++.-.++|++++...+. -+.=.-+.+.++++++ .|+.+-..|+..+.+-.++
T Consensus 752 ~~~~~~~v~~l~~h~~f~~~npn~~ral~~~f~~~n~~~fh~~~g~gy~~~~~~i~~ld~-~Np~~aarl~~~~~~w~~~ 830 (863)
T TIGR02414 752 RPDTLERVKALLQHPAFDLKNPNRVRALIGAFANNNLVRFHDISGSGYRFLADQIIAIDR-FNPQVAARLLEPLTRWRKL 830 (863)
T ss_pred cccHHHHHHHHhcCCCCCcCCCcHHHHHHHHHHhcCcccccCCCCcHHHHHHHHHHHhcC-cCHHHHHHHHHHhhhhhcC
Confidence 2233334444443333333 45567889998854332 1223456678889999 9999999999999999999
Q ss_pred hhHHHH
Q 004487 597 ESVSQV 602 (749)
Q Consensus 597 ~~a~~~ 602 (749)
+...+-
T Consensus 831 ~~~r~~ 836 (863)
T TIGR02414 831 DPKRQE 836 (863)
T ss_pred CHHHHH
Confidence 887764
No 475
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=21.17 E-value=8e+02 Score=24.19 Aligned_cols=181 Identities=8% Similarity=-0.024 Sum_probs=0.0
Q ss_pred CCHHHHHHHHhhCCC-----CCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc----cCCHHH
Q 004487 425 GSLKDAIQTFKEMPE-----RNIVSWNALISACAQNGDAQATLKSFEDMVQSGYQPDSVSLLSVLSACSH----CGLIEE 495 (749)
Q Consensus 425 g~~~~A~~~~~~~~~-----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~----~g~~~~ 495 (749)
+.+..|...+..... .....-.....+.....+..+|.++|..+-+.| +......|...|.. ..+..+
T Consensus 55 ~~~~~a~~~~~~a~~~~~~~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~a~~g---~~~a~~~lg~~~~~G~gv~~d~~~ 131 (292)
T COG0790 55 PDYAKALKSYEKAAELGDAAALALLGQMYGAGKGVSRDKTKAADWYRCAAADG---LAEALFNLGLMYANGRGVPLDLVK 131 (292)
T ss_pred ccHHHHHHHHHHhhhcCChHHHHHHHHHHHhccCccccHHHHHHHHHHHhhcc---cHHHHHhHHHHHhcCCCcccCHHH
Q ss_pred HHHHHHHhHHhcCCCCChHHHHHHHHHHHHcC-------CHHHHHHHHHhCCCCCCHHhHHHHHHHH----HhcCCHHHH
Q 004487 496 GLQYFNSMTQKYKLRPKKEHYASMVDILCRSG-------CFDEAEKLMAQMPFEPDEIMWSSVINSC----RIHKNLEFA 564 (749)
Q Consensus 496 a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g-------~~~~A~~~~~~~~~~p~~~~~~~ll~~~----~~~g~~~~a 564 (749)
|..++....+. |..+.......+...|..-. +...|...+.++-..-+......|...| ....|.++|
T Consensus 132 A~~~~~~Aa~~-g~~~a~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~~~~~a~~~lg~~y~~G~Gv~~d~~~A 210 (292)
T COG0790 132 ALKYYEKAAKL-GNVEAALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAELGNPDAQLLLGRMYEKGLGVPRDLKKA 210 (292)
T ss_pred HHHHHHHHHHc-CChhHHHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHHHhcCHHHHHHHHHHHHcCCCCCcCHHHH
Q ss_pred HHHHHHHhcCCCCCCchhHHHHHHHHHHcC---------------CchhHHHHHHHHHhCCCcc
Q 004487 565 KKAADQLFKMEKLRDAAPYVAMSNIYAVAG---------------QWESVSQVKKAMRERGVRK 613 (749)
Q Consensus 565 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---------------~~~~a~~~~~~m~~~g~~~ 613 (749)
...|+++-+.+. ......+. .+...| +...|...+....+.|...
T Consensus 211 ~~wy~~Aa~~g~---~~a~~~~~-~~~~~g~g~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~ 270 (292)
T COG0790 211 FRWYKKAAEQGD---GAACYNLG-LMYLNGEGVKKAAFLTAAKEEDKKQALEWLQKACELGFDN 270 (292)
T ss_pred HHHHHHHHHCCC---HHHHHHHH-HHHhcCCCchhhhhcccccCCCHHHHHHHHHHHHHcCChh
No 476
>PLN03192 Voltage-dependent potassium channel; Provisional
Probab=21.02 E-value=1.4e+03 Score=26.96 Aligned_cols=197 Identities=11% Similarity=0.011 Sum_probs=0.0
Q ss_pred HHHHHHHHHhCCCCchhHHHHHHHHhHcCCChhHHHHHHccCCCCCcchHHHHHHHHHhCCChhHHHHHHHHHHHCCCCC
Q 004487 93 IQVHADIIKFGYNSILIICNSLVDSYCKIRCLDLARRVFKEMPQKDSVSFNALITGFAKEGLNEEAIKLFVEMQHLGFKP 172 (749)
Q Consensus 93 ~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p 172 (749)
.+-+.++++...+-...+.+.++.-..+.++.+...-+.+.-...+......-+...+..|+.+ +.+.+.+.|..|
T Consensus 476 ~~~f~~ll~~~p~d~~~i~~~~l~~~~~l~~l~v~~ll~~~~~~~~~~~~~~~L~~Aa~~g~~~----~l~~Ll~~G~d~ 551 (823)
T PLN03192 476 TSTLIEAMQTRQEDNVVILKNFLQHHKELHDLNVGDLLGDNGGEHDDPNMASNLLTVASTGNAA----LLEELLKAKLDP 551 (823)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHhhhhccccHHHHHhhcccccCCccchhHHHHHHHcCCHH----HHHHHHHCCCCC
Q ss_pred ChhhH--HHHHHHHhCCCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHcCCChHHHHHHHccCCCCCcchHHHHHHHH
Q 004487 173 SDFTF--AAALSAGVGLADIALGRQVHAFVVKTNFVENVFVANALLDLYSKHDCVVEARKLFGEMPEVDGVSYNVMITCY 250 (749)
Q Consensus 173 ~~~t~--~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~ 250 (749)
|.... .+.|...+..|+.+-++.+++. ...+.......++-+...+..|+.+-+.-+++.-...+...-...+...
T Consensus 552 n~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~--gadin~~d~~G~TpL~~A~~~g~~~iv~~L~~~~~~~~~~~~~~~L~~A 629 (823)
T PLN03192 552 DIGDSKGRTPLHIAASKGYEDCVLVLLKH--ACNVHIRDANGNTALWNAISAKHHKIFRILYHFASISDPHAAGDLLCTA 629 (823)
T ss_pred CCCCCCCCCHHHHHHHcChHHHHHHHHhc--CCCCCCcCCCCCCHHHHHHHhCCHHHHHHHHhcCcccCcccCchHHHHH
Q ss_pred HhcCChhHHHHHHHHHHHCCCCCCcchHH--HHHHHHHccCChHHHHHHHH
Q 004487 251 AWNEQYKESLKLFRELQFTRFDRSQFPFS--TLLSVVANKLDLQIGRQIHT 299 (749)
Q Consensus 251 ~~~g~~~~A~~~~~~m~~~~~~p~~~t~~--~ll~~~~~~~~~~~a~~~~~ 299 (749)
+..|+.+ +.+.+.+.|..++..... +.+...+..|+.+.++-+.+
T Consensus 630 a~~g~~~----~v~~Ll~~Gadin~~d~~G~TpLh~A~~~g~~~iv~~Ll~ 676 (823)
T PLN03192 630 AKRNDLT----AMKELLKQGLNVDSEDHQGATALQVAMAEDHVDMVRLLIM 676 (823)
T ss_pred HHhCCHH----HHHHHHHCCCCCCCCCCCCCCHHHHHHHCCcHHHHHHHHH
No 477
>PF14669 Asp_Glu_race_2: Putative aspartate racemase
Probab=21.01 E-value=6.7e+02 Score=23.20 Aligned_cols=29 Identities=17% Similarity=0.189 Sum_probs=13.5
Q ss_pred HHHccCCCCCcchHHHHHHHHHhcCChhH
Q 004487 230 KLFGEMPEVDGVSYNVMITCYAWNEQYKE 258 (749)
Q Consensus 230 ~~f~~~~~~~~~~~~~li~~~~~~g~~~~ 258 (749)
.+..+.+++..+.|-.+..+-++.-+.++
T Consensus 97 ~Ltkd~Kdk~~vPFceFAetV~k~~q~~e 125 (233)
T PF14669_consen 97 ALTKDSKDKPGVPFCEFAETVCKDPQNDE 125 (233)
T ss_pred HHHhcccccCCCCHHHHHHHHhcCCccch
Confidence 33344444444555555555444444443
No 478
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=20.93 E-value=2.3e+02 Score=28.22 Aligned_cols=72 Identities=11% Similarity=0.204 Sum_probs=41.2
Q ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHhHHH-HHHHHHhcCCHHHHHHHHHHHhcCCCCCCchhHH
Q 004487 512 KKEHYASMVDILCRSGCFDEAEKLMAQM-PFEP-DEIMWSS-VINSCRIHKNLEFAKKAADQLFKMEKLRDAAPYV 584 (749)
Q Consensus 512 ~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~-ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 584 (749)
|+..|...+.-..+.|.+.+...++.+. ...| |+..|-. ----+..++|++.+..++.+.+.+.| .++..|.
T Consensus 106 D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~-~~p~iw~ 180 (435)
T COG5191 106 DPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNS-RSPRIWI 180 (435)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCC-CCchHHH
Confidence 3333433333333344444444444444 2233 4555533 22235678889999999999999888 7777665
No 479
>PF14669 Asp_Glu_race_2: Putative aspartate racemase
Probab=20.88 E-value=6.7e+02 Score=23.19 Aligned_cols=94 Identities=14% Similarity=0.159 Sum_probs=52.6
Q ss_pred HHhcCCCCcccHHHHHHHHHhCCChhHHHHHHHHHHHCCCCcCHHhHHHHHHHhcccCcHHHHHHHHHHHHHhCC-----
Q 004487 333 FANLSHISTVPWTAMISAYVQKGNLEEALNLFIEMCRANISADQATFASILRASAELASLSLGKQLHSFVIRSGF----- 407 (749)
Q Consensus 333 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~----- 407 (749)
.++..++-.++|.....+-++.-+.+++-+.|- ...=.+++-.|.+.-++..++.+++.+.+..+
T Consensus 99 tkd~Kdk~~vPFceFAetV~k~~q~~e~dK~~L----------GRiGiS~m~~Yhk~~qW~KGrkvLd~l~el~i~ft~L 168 (233)
T PF14669_consen 99 TKDSKDKPGVPFCEFAETVCKDPQNDEVDKTLL----------GRIGISLMYSYHKTLQWSKGRKVLDKLHELQIHFTSL 168 (233)
T ss_pred HhcccccCCCCHHHHHHHHhcCCccchhhhhhh----------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhc
Confidence 334444555667766666666555555433321 01122445556666777777777766654322
Q ss_pred ---------CCchhHHHHHHHHHHhcCCHHHHHHHHhh
Q 004487 408 ---------MSNVFSGSALLDMYAKSGSLKDAIQTFKE 436 (749)
Q Consensus 408 ---------~~~~~~~~~li~~y~~~g~~~~A~~~~~~ 436 (749)
.+--.+.|.-...+.++|.++.|..++++
T Consensus 169 KGL~g~e~~asrCqivn~AaEiFL~sgsidGA~~vLre 206 (233)
T PF14669_consen 169 KGLTGPEKLASRCQIVNIAAEIFLKSGSIDGALWVLRE 206 (233)
T ss_pred cCccCccccCchhhhHHHHHHHHHHcCCchHHHHHHhc
Confidence 22334556666667777777777777664
No 480
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=20.79 E-value=4e+02 Score=26.65 Aligned_cols=52 Identities=13% Similarity=0.238 Sum_probs=32.1
Q ss_pred HHHHHHhcCCHHHHHHHHHhcCCCCcccHHHHHHHHHhCCChhHHHHHHHHHHH
Q 004487 316 LVDMYAKCGRFEEAKEIFANLSHISTVPWTAMISAYVQKGNLEEALNLFIEMCR 369 (749)
Q Consensus 316 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 369 (749)
++..+.+.+++....+.+..+. .+..-...+..+...|++..|++++.+..+
T Consensus 104 Il~~~rkr~~l~~ll~~L~~i~--~v~~~~~~l~~ll~~~dy~~Al~li~~~~~ 155 (291)
T PF10475_consen 104 ILRLQRKRQNLKKLLEKLEQIK--TVQQTQSRLQELLEEGDYPGALDLIEECQQ 155 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 4444555555555555554442 122234567777889999999998888765
No 481
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=20.63 E-value=8.8e+02 Score=26.61 Aligned_cols=20 Identities=5% Similarity=0.072 Sum_probs=10.6
Q ss_pred CChhHHHHHHHHHHHCCCCC
Q 004487 153 GLNEEAIKLFVEMQHLGFKP 172 (749)
Q Consensus 153 g~~~~A~~l~~~m~~~g~~p 172 (749)
|+.+.++.++++|...|..|
T Consensus 259 ~d~~~~l~~~~~l~~~g~~~ 278 (509)
T PRK14958 259 KAGDRLLGCVTRLVEQGVDF 278 (509)
T ss_pred CCHHHHHHHHHHHHHcCCCH
Confidence 45555555555555555443
No 482
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=20.55 E-value=3.5e+02 Score=24.41 Aligned_cols=31 Identities=10% Similarity=-0.072 Sum_probs=13.6
Q ss_pred HHHHHhCCChhHHHHHHHHHHHCCCCCChhh
Q 004487 146 ITGFAKEGLNEEAIKLFVEMQHLGFKPSDFT 176 (749)
Q Consensus 146 i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t 176 (749)
+..+...++.-.|.++++.+.+.+..++..|
T Consensus 32 L~~l~~~~~hlSa~eI~~~L~~~~~~is~aT 62 (169)
T PRK11639 32 LRLMSLQPGAISAYDLLDLLREAEPQAKPPT 62 (169)
T ss_pred HHHHHhcCCCCCHHHHHHHHHhhCCCCCcch
Confidence 3333333344445555555554444444443
No 483
>PF02847 MA3: MA3 domain; InterPro: IPR003891 This entry represents the MI domain (after MA-3 and eIF4G), it is a protein-protein interaction module of ~130 amino acids [, , ]. It appears in several translation factors and is found in: One copy in plant and animal eIF4G 1 and 2 (DAP-5/NAT1/p97) Two copies in the animal programmed cell death protein 4 (PDCD4) or MA-3 that is induced during programmed cell death and inhibits neoplastic transformation Four tandem-repeated copies in a group of uncharacterised plant proteins The MI domain consists of seven alpha-helices, which pack into a globular form. The packing arrangement consists of repeating pairs of antiparallel helices packed one upon the other such that a superhelical axis is generated perpendicular to the alpha-helical axes []. The MI domain has also been named MA3 domain.; PDB: 2ION_A 2IOL_B 2NSZ_A 3EIQ_C 2HM8_A 2KZT_B 2IOS_A 2RG8_B 2ZU6_E 3EIJ_A ....
Probab=20.52 E-value=1.6e+02 Score=24.21 Aligned_cols=22 Identities=18% Similarity=0.332 Sum_probs=11.6
Q ss_pred HHHHHHHhcCChhHHHHHHHHH
Q 004487 245 VMITCYAWNEQYKESLKLFREL 266 (749)
Q Consensus 245 ~li~~~~~~g~~~~A~~~~~~m 266 (749)
.++..|...++.++|...+.++
T Consensus 7 ~~l~ey~~~~d~~ea~~~l~el 28 (113)
T PF02847_consen 7 SILMEYFSSGDVDEAVECLKEL 28 (113)
T ss_dssp HHHHHHHHHT-HHHHHHHHHHT
T ss_pred HHHHHHhcCCCHHHHHHHHHHh
Confidence 3444555556666666665554
No 484
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=20.39 E-value=1.2e+03 Score=25.91 Aligned_cols=19 Identities=5% Similarity=0.211 Sum_probs=11.7
Q ss_pred HHhcCChhHHHHHHHHHHH
Q 004487 250 YAWNEQYKESLKLFRELQF 268 (749)
Q Consensus 250 ~~~~g~~~~A~~~~~~m~~ 268 (749)
+....+.+.|+..|.....
T Consensus 259 ~g~~~d~e~a~~~l~~aa~ 277 (552)
T KOG1550|consen 259 YGVTQDLESAIEYLKLAAE 277 (552)
T ss_pred ccccccHHHHHHHHHHHHH
Confidence 3455566677777766644
No 485
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=20.09 E-value=1.5e+03 Score=27.02 Aligned_cols=183 Identities=10% Similarity=0.043 Sum_probs=97.3
Q ss_pred cchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCCcccHHHHHHHHHhCCChhHHHHHHHHHHHCCCCcCHHhHHHHHHHhc
Q 004487 308 SEVKVANSLVDMYAKCGRFEEAKEIFANLSHISTVPWTAMISAYVQKGNLEEALNLFIEMCRANISADQATFASILRASA 387 (749)
Q Consensus 308 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~ 387 (749)
+|..+....++.+...+.- ....+...+..+|...-...+.++.+.+..+.. .... -.++...=.....++.
T Consensus 696 ~d~~VR~~A~~aL~~~~~~-~~~~l~~~L~D~d~~VR~~Av~aL~~~~~~~~l----~~~l---~D~~~~VR~~aa~aL~ 767 (897)
T PRK13800 696 PDPVVRAAALDVLRALRAG-DAALFAAALGDPDHRVRIEAVRALVSVDDVESV----AGAA---TDENREVRIAVAKGLA 767 (897)
T ss_pred CCHHHHHHHHHHHHhhccC-CHHHHHHHhcCCCHHHHHHHHHHHhcccCcHHH----HHHh---cCCCHHHHHHHHHHHH
Confidence 4555555555555544321 122344445555555445555555555443221 1111 2344444445555555
Q ss_pred ccCcHHH-HHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHH-HHHhhCCCCCcchHHHHHHHHHhcCCHHHHHHHH
Q 004487 388 ELASLSL-GKQLHSFVIRSGFMSNVFSGSALLDMYAKSGSLKDAI-QTFKEMPERNIVSWNALISACAQNGDAQATLKSF 465 (749)
Q Consensus 388 ~~~~~~~-a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~-~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 465 (749)
..+..+. +...+..+.+ .++..+-.+.+..+.+.|..+.+. .+...+..++...-...+.++...+. .++...+
T Consensus 768 ~~~~~~~~~~~~L~~ll~---D~d~~VR~aA~~aLg~~g~~~~~~~~l~~aL~d~d~~VR~~Aa~aL~~l~~-~~a~~~L 843 (897)
T PRK13800 768 TLGAGGAPAGDAVRALTG---DPDPLVRAAALAALAELGCPPDDVAAATAALRASAWQVRQGAARALAGAAA-DVAVPAL 843 (897)
T ss_pred HhccccchhHHHHHHHhc---CCCHHHHHHHHHHHHhcCCcchhHHHHHHHhcCCChHHHHHHHHHHHhccc-cchHHHH
Confidence 5554322 1222222222 346777778888888888765543 33444445665556666777777665 4566666
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHH
Q 004487 466 EDMVQSGYQPDSVSLLSVLSACSHCGLIEEGLQYFNSMTQ 505 (749)
Q Consensus 466 ~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 505 (749)
..+.+ .|+...-...+.++...+.-..+...+....+
T Consensus 844 ~~~L~---D~~~~VR~~A~~aL~~~~~~~~a~~~L~~al~ 880 (897)
T PRK13800 844 VEALT---DPHLDVRKAAVLALTRWPGDPAARDALTTALT 880 (897)
T ss_pred HHHhc---CCCHHHHHHHHHHHhccCCCHHHHHHHHHHHh
Confidence 66654 46666666677777775434456666665554
No 486
>smart00804 TAP_C C-terminal domain of vertebrate Tap protein. The vertebrate Tap protein is a member of the NXF family of shuttling transport receptors for the nuclear export of mRNA. Its most C-terminal domain is important for binding to FG repeat-containing nuclear pore proteins (FG-nucleoporins) and is sufficient to mediate shuttling. This domain forms a compact four-helix fold related to that of a UBA domain.
Probab=20.01 E-value=94 Score=22.58 Aligned_cols=25 Identities=20% Similarity=0.543 Sum_probs=19.6
Q ss_pred CCChhHHHHHHHHhHhcCCCCCCcc
Q 004487 50 KNQFREAFKLFVDMRTDGGSDPDYV 74 (749)
Q Consensus 50 ~g~~~~a~~l~~~m~~~~g~~p~~~ 74 (749)
.=+++.|+..|.++...+.++|+.+
T Consensus 38 ~Wd~~~Al~~F~~lk~~~~IP~eAF 62 (63)
T smart00804 38 NWDYERALKNFTELKSEGSIPPEAF 62 (63)
T ss_pred CCCHHHHHHHHHHHHhcCCCChhhc
Confidence 4478899999999988756777654
Done!