Query 004487
Match_columns 749
No_of_seqs 745 out of 4304
Neff 10.8
Searched_HMMs 29240
Date Tue Mar 26 18:32:34 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/004487.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_1793-1796//hhsearch_pdb/004487hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xpi_A Anaphase-promoting comp 1.0 1 1 321.8 39.7 482 117-610 62-580 (597)
2 2xpi_A Anaphase-promoting comp 1.0 1 1 316.5 41.3 501 14-592 61-596 (597)
3 4g26_A Pentatricopeptide repea 1.0 1 1 213.1 22.1 45 76-120 29-73 (501)
4 4g26_A Pentatricopeptide repea 1.0 1 1 203.7 22.7 43 41-84 30-72 (501)
5 1w3b_A UDP-N-acetylglucosamine 1.0 1 1 188.1 37.8 369 147-595 7-388 (388)
6 1w3b_A UDP-N-acetylglucosamine 1.0 1 1 183.0 39.5 349 249-609 8-368 (388)
7 2gw1_A Mitochondrial precursor 1.0 1 1 175.6 30.7 225 379-609 240-478 (514)
8 2gw1_A Mitochondrial precursor 1.0 1 1 174.0 31.2 236 346-586 242-489 (514)
9 2y4t_A DNAJ homolog subfamily 1.0 1 1 168.6 30.7 177 410-592 176-375 (450)
10 3fp2_A TPR repeat-containing p 1.0 1 1 163.7 35.3 440 38-609 26-491 (537)
No 1
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=1.00 E-value=1 Score=321.84 Aligned_cols=482 Identities=9% Similarity=-0.034 Sum_probs=411.5
Q ss_pred HHHCCCCHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCHHHHHHH
Q ss_conf 82707990599999702999990039999999990899049999999998779999950499999997278985989999
Q 004487 117 SYCKIRCLDLARRVFKEMPQKDSVSFNALITGFAKEGLNEEAIKLFVEMQHLGFKPSDFTFAAALSAGVGLADIALGRQV 196 (749)
Q Consensus 117 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~ 196 (749)
.+.+.|....+...+..++.++...|+.++..+.+.|++++|+.+|++|.. ..|+..++..+..++...|+++.|..+
T Consensus 62 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~A~~~ 139 (597)
T 2xpi_A 62 NTSTDGSFLKERNAQNTDSLSREDYLRLWRHDALMQQQYKCAAFVGEKVLD--ITGNPNDAFWLAQVYCCTGDYARAKCL 139 (597)
T ss_dssp --------------------CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HHCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHCCCHHHHHHH
T ss_conf 665567667887754663378999999999999874583479999999996--089935799999999974769999999
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHCCCC-CC------------------CCCHHHHHHHHHHHCCCHH
Q ss_conf 9999980989874578899999780799688999873299-99------------------9000999999999459925
Q 004487 197 HAFVVKTNFVENVFVANALLDLYSKHDCVVEARKLFGEMP-EV------------------DGVSYNVMITCYAWNEQYK 257 (749)
Q Consensus 197 ~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~-~~------------------~~~~~~~li~~~~~~g~~~ 257 (749)
+..+... +++..+++.++.+|.++|++++|.++|+++. .. +..+|+.++.+|.+.|+++
T Consensus 140 ~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 217 (597)
T 2xpi_A 140 LTKEDLY--NRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFD 217 (597)
T ss_dssp HHHTCGG--GTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHCC--CCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCHH
T ss_conf 9987335--45650899999999988669999999842488632232343343211235125899999889999839989
Q ss_pred HHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCHHHH---HHH-HHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHH
Q ss_conf 8999999988789999932099899999734894899---999-999998358861368889999999439978999999
Q 004487 258 ESLKLFRELQFTRFDRSQFPFSTLLSVVANKLDLQIG---RQI-HTQTIVTTAISEVKVANSLVDMYAKCGRFEEAKEIF 333 (749)
Q Consensus 258 ~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a---~~~-~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 333 (749)
+|+..|++|...+ |+.......+..+......... ..+ +..+...+......+++.++..|.+.|++++|.++|
T Consensus 218 ~A~~~~~~~~~~~--p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~ 295 (597)
T 2xpi_A 218 RAKECYKEALMVD--AKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYL 295 (597)
T ss_dssp HHHHHHHHHHHHC--TTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHC--CHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHH
T ss_conf 9999999999729--32569999999850346156789998657742344308899999999999980731399999999
Q ss_pred HHCCC--CCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCH
Q ss_conf 72588--9933199999999968994699999999988798868976999999823517479899999999980999725
Q 004487 334 ANLSH--ISTVPWTAMISAYVQKGNLEEALNLFIEMCRANISADQATFASILRASAELASLSLGKQLHSFVIRSGFMSNV 411 (749)
Q Consensus 334 ~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 411 (749)
+.+.+ ++..+|+.++..|.+.|++++|+.+|+++...+ +.+..++..++..+...|+.+.+..++..+.+.. +.+.
T Consensus 296 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~ 373 (597)
T 2xpi_A 296 SSINGLEKSSDLLLCKADTLFVRSRFIDVLAITTKILEID-PYNLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEKA 373 (597)
T ss_dssp HTSTTGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSH
T ss_pred HHHHCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCC-CCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHC-CCCH
T ss_conf 8764388309999999999998468999999999999729-5537999999999998277779999999998518-3547
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHCC---CCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q ss_conf 389999999991399989999984099---99820599999999944998899999999998799989999999999986
Q 004487 412 FSGSALLDMYAKSGSLKDAIQTFKEMP---ERNIVSWNALISACAQNGDAQATLKSFEDMVQSGYQPDSVSLLSVLSACS 488 (749)
Q Consensus 412 ~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~ 488 (749)
.+++.++.+|.+.|++++|.++|+++. ..+..+|+.++.+|.+.|++++|+++|+++...+ +.+..++..++.+|.
T Consensus 374 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~ 452 (597)
T 2xpi_A 374 VTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLFLGMQHM 452 (597)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHH
T ss_conf 9999999999983569999999999987297778999999999997577799999999999868-134389999999999
Q ss_pred CCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHC-------CCCCC--HHHHHHHHHHHHHCC
Q ss_conf 138799999999993884299888589999999999829977899999849-------99999--786999999997159
Q 004487 489 HCGLIEEGLQYFNSMTQKYKLRPKKEHYASMVDILCRSGCFDEAEKLMAQM-------PFEPD--EIMWSSVINSCRIHK 559 (749)
Q Consensus 489 ~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-------~~~p~--~~~~~~l~~~~~~~g 559 (749)
+.|++++|.++|+.+... .+.+...|..++..|.+.|++++|.++++++ +..|+ ..+|..++.+|...|
T Consensus 453 ~~g~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g 530 (597)
T 2xpi_A 453 QLGNILLANEYLQSSYAL--FQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLK 530 (597)
T ss_dssp HHTCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTT
T ss_pred HCCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHC
T ss_conf 857999999999999984--888767999999999981899999999999998532345453549999999999999804
Q ss_pred CHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHCC
Q ss_conf 988999999998627888995259999899887299015999999998679
Q 004487 560 NLEFAKKAADQLFKMEKLRDAAPYVAMSNIYAVAGQWESVSQVKKAMRERG 610 (749)
Q Consensus 560 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 610 (749)
++++|...++++++.+| .+..+|..++.+|...|++++|.+.++++.+..
T Consensus 531 ~~~~A~~~~~~~~~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~ 580 (597)
T 2xpi_A 531 MYDAAIDALNQGLLLST-NDANVHTAIALVYLHKKIPGLAITHLHESLAIS 580 (597)
T ss_dssp CHHHHHHHHHHHHHHSS-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCC
T ss_conf 79999999999997389-973899999999998178999999999997208
No 2
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=1.00 E-value=1 Score=316.52 Aligned_cols=501 Identities=10% Similarity=-0.019 Sum_probs=370.4
Q ss_pred HHHHCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHCCCCCCHHHHH
Q ss_conf 99870899278999986199999025999999998079935899999984744999998602999997508999958999
Q 004487 14 SGYVKSGNLATARELFNSMVDRTAVSWTILIGGYSQKNQFREAFKLFVDMRTDGGSDPDYVTFATLLSGCSEPDTANELI 93 (749)
Q Consensus 14 ~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~g~~p~~~~~~~ll~~~~~~~~~~~a~ 93 (749)
..+.+.|.+..+...|+.++.+++..|+.++..|.+.|++++|..+|++|... .|+..++..+..++...|+++.|.
T Consensus 61 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~---~p~~~~~~~l~~~~~~~g~~~~A~ 137 (597)
T 2xpi_A 61 NNTSTDGSFLKERNAQNTDSLSREDYLRLWRHDALMQQQYKCAAFVGEKVLDI---TGNPNDAFWLAQVYCCTGDYARAK 137 (597)
T ss_dssp ---------------------CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---HCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH---CCCCHHHHHHHHHHHHCCCHHHHH
T ss_conf 56655676678877546633789999999999998745834799999999960---899357999999999747699999
Q ss_pred HHHHHHHHHCCCCCHHHHHHHHHHHHCCCCHHHHHHHHCCCCCC-------------------CCCHHHHHHHHHHHCCC
Q ss_conf 99999999489986668999999827079905999997029999-------------------90039999999990899
Q 004487 94 QVHADIIKFGYNSILIICNSLVDSYCKIRCLDLARRVFKEMPQK-------------------DSVSFNALITGFAKEGL 154 (749)
Q Consensus 94 ~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-------------------~~~~~~~li~~~~~~g~ 154 (749)
.+++.+... ++++.+++.++.+|.++|++++|..+|+++... +..+|+.++.+|.+.|+
T Consensus 138 ~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 215 (597)
T 2xpi_A 138 CLLTKEDLY--NRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSN 215 (597)
T ss_dssp HHHHHTCGG--GTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHCC--CCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCC
T ss_conf 999987335--456508999999999886699999998424886322323433432112351258999998899998399
Q ss_pred HHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHCCCCHHH--HHHH-HHHHHHCCCCCCHHHHHHHHHHHHCCCCHHHHHH
Q ss_conf 049999999998779999950-49999999727898598--9999-9999980989874578899999780799688999
Q 004487 155 NEEAIKLFVEMQHLGFKPSDF-TFAAALSAGVGLADIAL--GRQV-HAFVVKTNFVENVFVANALLDLYSKHDCVVEARK 230 (749)
Q Consensus 155 ~~~A~~l~~~m~~~g~~p~~~-t~~~ll~a~~~~~~~~~--a~~~-~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~ 230 (749)
+++|+++|++|.+.+ |+.. .+..+...+...+.... ...+ +..+...+......+++.++..|.+.|++++|.+
T Consensus 216 ~~~A~~~~~~~~~~~--p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~ 293 (597)
T 2xpi_A 216 FDRAKECYKEALMVD--AKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAED 293 (597)
T ss_dssp HHHHHHHHHHHHHHC--TTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHC--CHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHH
T ss_conf 899999999999729--325699999998503461567899986577423443088999999999999807313999999
Q ss_pred HHCCCCC--CCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCC
Q ss_conf 8732999--99000999999999459925899999998878999993209989999973489489999999999835886
Q 004487 231 LFGEMPE--VDGVSYNVMITCYAWNEQYKESLKLFRELQFTRFDRSQFPFSTLLSVVANKLDLQIGRQIHTQTIVTTAIS 308 (749)
Q Consensus 231 ~f~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~ 308 (749)
+|+.+.+ ++..+|+.++..|.+.|++++|+.+|+++...+. .+..++..+..++...|+.+.+..++..+.+.. +.
T Consensus 294 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~ 371 (597)
T 2xpi_A 294 YLSSINGLEKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDP-YNLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PE 371 (597)
T ss_dssp HHHTSTTGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TT
T ss_pred HHHHHHCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHC-CC
T ss_conf 9987643883099999999999984689999999999997295-537999999999998277779999999998518-35
Q ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCC
Q ss_conf 13688899999994399789999997258899331999999999689946999999999887988689769999998235
Q 004487 309 EVKVANSLVDMYAKCGRFEEAKEIFANLSHISTVPWTAMISAYVQKGNLEEALNLFIEMCRANISADQATFASILRASAE 388 (749)
Q Consensus 309 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~ 388 (749)
+. ..|+.++..|.+.|++++|..+|+++... .
T Consensus 372 ~~-------------------------------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~--------------- 403 (597)
T 2xpi_A 372 KA-------------------------------VTWLAVGIYYLCVNKISEARRYFSKSSTM--D--------------- 403 (597)
T ss_dssp SH-------------------------------HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--C---------------
T ss_pred CH-------------------------------HHHHHHHHHHHHHCCHHHHHHHHHHHHHH--C---------------
T ss_conf 47-------------------------------99999999999835699999999999872--9---------------
Q ss_pred CCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHCC---CCCCCHHHHHHHHHHHCCCHHHHHHHH
Q ss_conf 17479899999999980999725389999999991399989999984099---998205999999999449988999999
Q 004487 389 LASLSLGKQLHSFVIRSGFMSNVFSGSALLDMYAKSGSLKDAIQTFKEMP---ERNIVSWNALISACAQNGDAQATLKSF 465 (749)
Q Consensus 389 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~ 465 (749)
+.+...++.++..|.+.|++++|.++|+++. ..+..+|+.++.+|.+.|++++|.+.|
T Consensus 404 -------------------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 464 (597)
T 2xpi_A 404 -------------------PQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQLGNILLANEYL 464 (597)
T ss_dssp -------------------TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTTCSHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred -------------------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHH
T ss_conf -------------------7778999999999997577799999999999868134389999999999857999999999
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHC---CCCCC--HHHHHHHHHHHHHCCCHHHHHHHHHHC-
Q ss_conf 999987999899999999999861387999999999938842---99888--589999999999829977899999849-
Q 004487 466 EDMVQSGYQPDSVSLLSVLSACSHCGLIEEGLQYFNSMTQKY---KLRPK--KEHYASMVDILCRSGCFDEAEKLMAQM- 539 (749)
Q Consensus 466 ~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~---~~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~~- 539 (749)
+++.+.. +.+..++..+...|.+.|++++|.++|+.+.... +..|+ ...+..++.+|.+.|++++|.+.++++
T Consensus 465 ~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 543 (597)
T 2xpi_A 465 QSSYALF-QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGL 543 (597)
T ss_dssp HHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHC-CCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_conf 9999848-887679999999999818999999999999985323454535499999999999998047999999999999
Q ss_pred CCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHH
Q ss_conf 9999-9786999999997159988999999998627888995259999899887
Q 004487 540 PFEP-DEIMWSSVINSCRIHKNLEFAKKAADQLFKMEKLRDAAPYVAMSNIYAV 592 (749)
Q Consensus 540 ~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 592 (749)
...| +..+|..+...|...|++++|...++++++++| .++..+..++++|..
T Consensus 544 ~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p-~~~~~~~~l~~~~~~ 596 (597)
T 2xpi_A 544 LLSTNDANVHTAIALVYLHKKIPGLAITHLHESLAISP-NEIMASDLLKRALEE 596 (597)
T ss_dssp HHSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHTTC-
T ss_pred HHCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCC-CCHHHHHHHHHHHHC
T ss_conf 73899738999999999981789999999999972088-874899999998743
No 3
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=1.00 E-value=1 Score=213.05 Aligned_cols=45 Identities=16% Similarity=0.126 Sum_probs=16.5
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHC
Q ss_conf 999997508999958999999999994899866689999998270
Q 004487 76 FATLLSGCSEPDTANELIQVHADIIKFGYNSILIICNSLVDSYCK 120 (749)
Q Consensus 76 ~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~ 120 (749)
++.+|.+|++.|+++.|.+++++|.+.|+.||..+||+||.+|++
T Consensus 29 l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~ 73 (501)
T 4g26_A 29 LKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSL 73 (501)
T ss_dssp HHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
T ss_conf 999999998598999999999999981899878399999999985
No 4
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=1.00 E-value=1 Score=203.72 Aligned_cols=43 Identities=26% Similarity=0.386 Sum_probs=14.7
Q ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHCC
Q ss_conf 99999998079935899999984744999998602999997508
Q 004487 41 TILIGGYSQKNQFREAFKLFVDMRTDGGSDPDYVTFATLLSGCS 84 (749)
Q Consensus 41 ~~li~~~~~~g~~~~a~~l~~~m~~~~g~~p~~~~~~~ll~~~~ 84 (749)
+.+|.+|++.|+.++|+++|++|.+. |+.||..+|+++|.+|+
T Consensus 30 ~~~id~c~k~G~~~~A~~lf~~M~~~-Gv~pd~~tyn~Li~~c~ 72 (501)
T 4g26_A 30 KQKLDMCSKKGDVLEALRLYDEARRN-GVQLSQYHYNVLLYVCS 72 (501)
T ss_dssp HHHHHHTTTSCCHHHHHHHHHHHHHH-TCCCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHH
T ss_conf 99999998598999999999999981-89987839999999998
No 5
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=1.00 E-value=1 Score=188.11 Aligned_cols=369 Identities=13% Similarity=0.132 Sum_probs=188.4
Q ss_pred HHHHHCCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCH
Q ss_conf 9999089904999999999877999995-049999999727898598999999999809898745788999997807996
Q 004487 147 TGFAKEGLNEEAIKLFVEMQHLGFKPSD-FTFAAALSAGVGLADIALGRQVHAFVVKTNFVENVFVANALLDLYSKHDCV 225 (749)
Q Consensus 147 ~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~ 225 (749)
..+.+.|++++|.+.+..+... .|+. ..+..+...+...++++.+...+...++.. +.+...+..+...|.+.|++
T Consensus 7 ~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~g~~ 83 (388)
T 1w3b_A 7 HREYQAGDFEAAERHCMQLWRQ--EPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQL 83 (388)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHCCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCC-CCCHHHHHHHHHHHHHCCCH
T ss_conf 9998779999999999999984--97889999999999998689999999999997619-78669999999999877999
Q ss_pred HHHHHHHCCCCC--C-CCCHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHH
Q ss_conf 889998732999--9-9000999999999459925899999998878999993209989999973489489999999999
Q 004487 226 VEARKLFGEMPE--V-DGVSYNVMITCYAWNEQYKESLKLFRELQFTRFDRSQFPFSTLLSVVANKLDLQIGRQIHTQTI 302 (749)
Q Consensus 226 ~~A~~~f~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~ 302 (749)
++|...|+.+.. | +..+|..+...+.+.|++++|+..|.++... .|+
T Consensus 84 ~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~---------------------------- 133 (388)
T 1w3b_A 84 QEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQY--NPD---------------------------- 133 (388)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHH--CTT----------------------------
T ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--CCC----------------------------
T ss_conf 99999999998749653999999999999858999999999999975--989----------------------------
Q ss_pred HHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHCCC---CCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHH
Q ss_conf 835886136888999999943997899999972588---99331999999999689946999999999887988689769
Q 004487 303 VTTAISEVKVANSLVDMYAKCGRFEEAKEIFANLSH---ISTVPWTAMISAYVQKGNLEEALNLFIEMCRANISADQATF 379 (749)
Q Consensus 303 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~ 379 (749)
+...+..+...+...|++++|.+.|+.+.. .+...|..+...+...|++++|...|+++..
T Consensus 134 ------~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~---------- 197 (388)
T 1w3b_A 134 ------LYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVT---------- 197 (388)
T ss_dssp ------CTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH----------
T ss_pred ------CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH----------
T ss_conf ------6899999999999846899999999999872989789999999999985999999999999985----------
Q ss_pred HHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHCC---CCCCCHHHHHHHHHHHCC
Q ss_conf 99999823517479899999999980999725389999999991399989999984099---998205999999999449
Q 004487 380 ASILRASAELASLSLGKQLHSFVIRSGFMSNVFSGSALLDMYAKSGSLKDAIQTFKEMP---ERNIVSWNALISACAQNG 456 (749)
Q Consensus 380 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g 456 (749)
.. +.+...+..+...+...|++++|...|++.. ..+...|..+...+...|
T Consensus 198 -------------------------~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g 251 (388)
T 1w3b_A 198 -------------------------LD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQG 251 (388)
T ss_dssp -------------------------HC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred -------------------------CC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCC
T ss_conf -------------------------59-8867999999999998578999999999998529687899999999999868
Q ss_pred CHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHH
Q ss_conf 98899999999998799989-99999999998613879999999999388429988858999999999982997789999
Q 004487 457 DAQATLKSFEDMVQSGYQPD-SVSLLSVLSACSHCGLIEEGLQYFNSMTQKYKLRPKKEHYASMVDILCRSGCFDEAEKL 535 (749)
Q Consensus 457 ~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~ 535 (749)
++++|+..|+++.+. .|+ ..++..+..++...|++++|...++.+... .+.+...+..+...+...|++++|.+.
T Consensus 252 ~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~ 327 (388)
T 1w3b_A 252 LIDLAIDTYRRAIEL--QPHFPDAYCNLANALKEKGSVAEAEDCYNTALRL--CPTHADSLNNLANIKREQGNIEEAVRL 327 (388)
T ss_dssp CHHHHHHHHHHHHHT--CSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTTTCHHHHHHH
T ss_pred CHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHCCCHHHHHHH
T ss_conf 899999999999864--9998899999999999869979999999999864--944499999999999984899999999
Q ss_pred HHHC-CCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCC
Q ss_conf 9849-9999-9786999999997159988999999998627888995259999899887299
Q 004487 536 MAQM-PFEP-DEIMWSSVINSCRIHKNLEFAKKAADQLFKMEKLRDAAPYVAMSNIYAVAGQ 595 (749)
Q Consensus 536 ~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 595 (749)
++++ ...| +...|..+...+...|+.++|...++++++..| .+...|..++.++...|+
T Consensus 328 ~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p-~~~~a~~~lg~~~~~~~~ 388 (388)
T 1w3b_A 328 YRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISP-TFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp HHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCT-TCHHHHHHHHHHHHHTCC
T ss_pred HHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHCCC
T ss_conf 9999860987399997799999986888999999999986199-978999859999987459
No 6
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=1.00 E-value=1 Score=183.02 Aligned_cols=349 Identities=14% Similarity=0.128 Sum_probs=264.3
Q ss_pred HHHHCCCHHHHHHHHHHHHHCCCCCCCC-HHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHH
Q ss_conf 9994599258999999988789999932-099899999734894899999999998358861368889999999439978
Q 004487 249 CYAWNEQYKESLKLFRELQFTRFDRSQF-PFSTLLSVVANKLDLQIGRQIHTQTIVTTAISEVKVANSLVDMYAKCGRFE 327 (749)
Q Consensus 249 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~-t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 327 (749)
.+.+.|++++|...+.++... .|+.. .+..+...+...++.+.+...+...++.. +.+...+..+...|.+.|+++
T Consensus 8 ~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~g~~~ 84 (388)
T 1w3b_A 8 REYQAGDFEAAERHCMQLWRQ--EPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQLQ 84 (388)
T ss_dssp HHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHCCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCC-CCCHHHHHHHHHHHHHCCCHH
T ss_conf 998779999999999999984--97889999999999998689999999999997619-786699999999998779999
Q ss_pred HHHHHHHHCCC--C-CCCCHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHCCCCCHHHHHHHHHHHH
Q ss_conf 99999972588--9-933199999999968994699999999988798868-9769999998235174798999999999
Q 004487 328 EAKEIFANLSH--I-STVPWTAMISAYVQKGNLEEALNLFIEMCRANISAD-QATFASILRASAELASLSLGKQLHSFVI 403 (749)
Q Consensus 328 ~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~~~~~~a~~~~~~~~ 403 (749)
+|...|+.+.. | +...|..+...+...|++++|...|.++... .|+ ...+..+...+...|+++.|...+..+.
T Consensus 85 ~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 162 (388)
T 1w3b_A 85 EAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQY--NPDLYCVRSDLGNLLKALGRLEEAKACYLKAI 162 (388)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHH--CTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
T ss_conf 9999999998749653999999999999858999999999999975--98968999999999998468999999999998
Q ss_pred HHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHCC---CCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCC-HHH
Q ss_conf 80999725389999999991399989999984099---99820599999999944998899999999998799989-999
Q 004487 404 RSGFMSNVFSGSALLDMYAKSGSLKDAIQTFKEMP---ERNIVSWNALISACAQNGDAQATLKSFEDMVQSGYQPD-SVS 479 (749)
Q Consensus 404 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t 479 (749)
+.. +.+...+..+...|.+.|++++|...|+++. ..+...|..+...+...|++++|+..+++... ..|+ ..+
T Consensus 163 ~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~--~~p~~~~~ 239 (388)
T 1w3b_A 163 ETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALS--LSPNHAVV 239 (388)
T ss_dssp HHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHH--HCTTCHHH
T ss_pred HHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--HCCCCHHH
T ss_conf 729-897899999999999859999999999999855988679999999999985789999999999985--29687899
Q ss_pred HHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHC-CC-CCCHHHHHHHHHHHH
Q ss_conf 99999998613879999999999388429988-8589999999999829977899999849-99-999786999999997
Q 004487 480 LLSVLSACSHCGLIEEGLQYFNSMTQKYKLRP-KKEHYASMVDILCRSGCFDEAEKLMAQM-PF-EPDEIMWSSVINSCR 556 (749)
Q Consensus 480 ~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~~ 556 (749)
+..+..++...|++++|...++.+... .| +...+..+...+.+.|++++|.+.++++ .. +.+..+|..+...+.
T Consensus 240 ~~~l~~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 316 (388)
T 1w3b_A 240 HGNLACVYYEQGLIDLAIDTYRRAIEL---QPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKR 316 (388)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHT---CSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHH---CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
T ss_conf 999999999868899999999999864---99988999999999998699799999999998649444999999999999
Q ss_pred HCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHC
Q ss_conf 15998899999999862788899525999989988729901599999999867
Q 004487 557 IHKNLEFAKKAADQLFKMEKLRDAAPYVAMSNIYAVAGQWESVSQVKKAMRER 609 (749)
Q Consensus 557 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 609 (749)
..|++++|...++++++..| .+...+..++.+|...|++++|...++++.+.
T Consensus 317 ~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 368 (388)
T 1w3b_A 317 EQGNIEEAVRLYRKALEVFP-EFAAAHSNLASVLQQQGKLQEALMHYKEAIRI 368 (388)
T ss_dssp TTTCHHHHHHHHHHHTTSCT-TCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTT
T ss_pred HCCCHHHHHHHHHHHHHCCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_conf 84899999999999986098-73999977999999868889999999999861
No 7
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=1.00 E-value=1 Score=175.63 Aligned_cols=225 Identities=9% Similarity=-0.038 Sum_probs=158.5
Q ss_pred HHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHCC---CCCCCHHHHHHHHHHHC
Q ss_conf 999999823517479899999999980999725389999999991399989999984099---99820599999999944
Q 004487 379 FASILRASAELASLSLGKQLHSFVIRSGFMSNVFSGSALLDMYAKSGSLKDAIQTFKEMP---ERNIVSWNALISACAQN 455 (749)
Q Consensus 379 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~ 455 (749)
+..+...+...|+++.+...+..+.+.... ...+..+...|...|++++|...++.+. ..+...|..+...+...
T Consensus 240 ~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 317 (514)
T 2gw1_A 240 LEHTGIFKFLKNDPLGAHEDIKKAIELFPR--VNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFIL 317 (514)
T ss_dssp HHHHHHHHHHSSCHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTTCTHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH
T ss_conf 999999999878999999999999863864--899999999999888899999999998613867789999999999980
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHH
Q ss_conf 99889999999999879998999999999998613879999999999388429988858999999999982997789999
Q 004487 456 GDAQATLKSFEDMVQSGYQPDSVSLLSVLSACSHCGLIEEGLQYFNSMTQKYKLRPKKEHYASMVDILCRSGCFDEAEKL 535 (749)
Q Consensus 456 g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~ 535 (749)
|++++|+..++++.... +.+...+..+...+...|++++|...++.+... .+.+...+..+...+.+.|++++|.+.
T Consensus 318 ~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~ 394 (514)
T 2gw1_A 318 QNYDQAGKDFDKAKELD-PENIFPYIQLACLAYRENKFDDCETLFSEAKRK--FPEAPEVPNFFAEILTDKNDFDKALKQ 394 (514)
T ss_dssp TCTTHHHHHHHHHHHTC-SSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHH--STTCSHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHC-HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHCCCHHHHHHH
T ss_conf 77999999999998738-502899999999999868999999999999987--546778999999999878899999999
Q ss_pred HHHC----CCCCC----HHHHHHHHHHHHH---CCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHH
Q ss_conf 9849----99999----7869999999971---59988999999998627888995259999899887299015999999
Q 004487 536 MAQM----PFEPD----EIMWSSVINSCRI---HKNLEFAKKAADQLFKMEKLRDAAPYVAMSNIYAVAGQWESVSQVKK 604 (749)
Q Consensus 536 ~~~~----~~~p~----~~~~~~l~~~~~~---~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 604 (749)
++++ +..++ ...|..+...+.. .|++++|...++++++..| .+...+..++.+|...|++++|...++
T Consensus 395 ~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~ 473 (514)
T 2gw1_A 395 YDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDP-RSEQAKIGLAQMKLQQEDIDEAITLFE 473 (514)
T ss_dssp HHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHHCCHHHHHHHHH
T ss_conf 9999976123321789999999999998663325888999999999987585-558999999999998257999999999
Q ss_pred HHHHC
Q ss_conf 99867
Q 004487 605 AMRER 609 (749)
Q Consensus 605 ~m~~~ 609 (749)
+..+.
T Consensus 474 ~a~~~ 478 (514)
T 2gw1_A 474 ESADL 478 (514)
T ss_dssp HHHHH
T ss_pred HHHHH
T ss_conf 99876
No 8
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=1.00 E-value=1 Score=174.03 Aligned_cols=236 Identities=9% Similarity=-0.013 Sum_probs=156.2
Q ss_pred HHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCC
Q ss_conf 99999996899469999999998879886897699999982351747989999999998099972538999999999139
Q 004487 346 AMISAYVQKGNLEEALNLFIEMCRANISADQATFASILRASAELASLSLGKQLHSFVIRSGFMSNVFSGSALLDMYAKSG 425 (749)
Q Consensus 346 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 425 (749)
.+...+...|++++|...|+++.... |+...+..+...+...|+++.+...+..+.+.. +.+...+..+...|...|
T Consensus 242 ~~~~~~~~~~~~~~A~~~~~~~l~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~ 318 (514)
T 2gw1_A 242 HTGIFKFLKNDPLGAHEDIKKAIELF--PRVNSYIYMALIMADRNDSTEYYNYFDKALKLD-SNNSSVYYHRGQMNFILQ 318 (514)
T ss_dssp HHHHHHHHSSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTC-TTCTHHHHHHHHHHHHTT
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCC-CCCHHHHHHHHHHHHHHC
T ss_conf 99999998789999999999998638--648999999999998888999999999986138-677899999999999807
Q ss_pred CHHHHHHHHHHCC---CCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHH
Q ss_conf 9989999984099---9982059999999994499889999999999879998999999999998613879999999999
Q 004487 426 SLKDAIQTFKEMP---ERNIVSWNALISACAQNGDAQATLKSFEDMVQSGYQPDSVSLLSVLSACSHCGLIEEGLQYFNS 502 (749)
Q Consensus 426 ~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~ 502 (749)
++++|...|+... ..+...|..+...+...|++++|+..++++.... +.+...+..+...+...|++++|...++.
T Consensus 319 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~ 397 (514)
T 2gw1_A 319 NYDQAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFSEAKRKF-PEAPEVPNFFAEILTDKNDFDKALKQYDL 397 (514)
T ss_dssp CTTHHHHHHHHHHHTCSSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHH
T ss_conf 79999999999987385028999999999998689999999999999875-46778999999999878899999999999
Q ss_pred HHHHCCCCCC----HHHHHHHHHHHHH---CCCHHHHHHHHHHC-CCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHC
Q ss_conf 3884299888----5899999999998---29977899999849-9999-978699999999715998899999999862
Q 004487 503 MTQKYKLRPK----KEHYASMVDILCR---SGCFDEAEKLMAQM-PFEP-DEIMWSSVINSCRIHKNLEFAKKAADQLFK 573 (749)
Q Consensus 503 m~~~~~~~p~----~~~~~~li~~~~~---~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 573 (749)
+.....-.+. ...+..+...+.. .|++++|.+.++++ ...| +...|..+...+...|+.++|...++++++
T Consensus 398 a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 477 (514)
T 2gw1_A 398 AIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESAD 477 (514)
T ss_dssp HHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_conf 99761233217899999999999986633258889999999999875855589999999999982579999999999987
Q ss_pred CCCCCCCHHHHHH
Q ss_conf 7888995259999
Q 004487 574 MEKLRDAAPYVAM 586 (749)
Q Consensus 574 ~~~~~~~~~~~~l 586 (749)
..| .+...+..+
T Consensus 478 ~~~-~~~~~~~~~ 489 (514)
T 2gw1_A 478 LAR-TMEEKLQAI 489 (514)
T ss_dssp HCS-SHHHHHHHH
T ss_pred HCC-CCHHHHHHH
T ss_conf 661-468899999
No 9
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=1.00 E-value=1 Score=168.61 Aligned_cols=177 Identities=12% Similarity=0.148 Sum_probs=132.3
Q ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHCC---CCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHH-HHHHH--
Q ss_conf 25389999999991399989999984099---9982059999999994499889999999999879998999-99999--
Q 004487 410 NVFSGSALLDMYAKSGSLKDAIQTFKEMP---ERNIVSWNALISACAQNGDAQATLKSFEDMVQSGYQPDSV-SLLSV-- 483 (749)
Q Consensus 410 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~l-- 483 (749)
+...+..+..+|.+.|++++|...|+.+. ..+...|..+...+...|++++|+..|+++.. ..|+.. .+..+
T Consensus 176 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~p~~~~~~~~~~~ 253 (450)
T 2y4t_A 176 DAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLK--LDQDHKRCFAHYKQ 253 (450)
T ss_dssp CHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--HCCCHHHHHHHHHH
T ss_conf 7699999999998779999999999999986889879999999999975999999999999987--59980899999999
Q ss_pred ----------HHHHHCCCCHHHHHHHHHHHHHHCCCCCC-----HHHHHHHHHHHHHCCCHHHHHHHHHHC-CCCC-CHH
Q ss_conf ----------99986138799999999993884299888-----589999999999829977899999849-9999-978
Q 004487 484 ----------LSACSHCGLIEEGLQYFNSMTQKYKLRPK-----KEHYASMVDILCRSGCFDEAEKLMAQM-PFEP-DEI 546 (749)
Q Consensus 484 ----------l~a~~~~g~~~~a~~~~~~m~~~~~~~p~-----~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~ 546 (749)
..+|...|++++|...++.+... .|+ ..++..++.++.+.|++++|.+.++++ ...| +..
T Consensus 254 ~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~---~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~ 330 (450)
T 2y4t_A 254 VKKLNKLIESAEELIRDGRYTDATSKYESVMKT---EPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPDNVN 330 (450)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHC---CCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHH
T ss_conf 999999999999998717999999999999850---87336899999999999999878899999999999884845489
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHH
Q ss_conf 6999999997159988999999998627888995259999899887
Q 004487 547 MWSSVINSCRIHKNLEFAKKAADQLFKMEKLRDAAPYVAMSNIYAV 592 (749)
Q Consensus 547 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 592 (749)
.|..+..+|...|++++|...+++++++.| .+...+..+..+...
T Consensus 331 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~ 375 (450)
T 2y4t_A 331 ALKDRAEAYLIEEMYDEAIQDYETAQEHNE-NDQQIREGLEKAQRL 375 (450)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTSS-SCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHH
T ss_conf 999999999870379999999999988593-529999999999998
No 10
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=1.00 E-value=1 Score=163.73 Aligned_cols=440 Identities=10% Similarity=0.017 Sum_probs=195.7
Q ss_pred CHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHH
Q ss_conf 25999999998079935899999984744999998602999997508999958999999999994899866689999998
Q 004487 38 VSWTILIGGYSQKNQFREAFKLFVDMRTDGGSDPDYVTFATLLSGCSEPDTANELIQVHADIIKFGYNSILIICNSLVDS 117 (749)
Q Consensus 38 ~~~~~li~~~~~~g~~~~a~~l~~~m~~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~ 117 (749)
..|..+...+.+.|++++|...|+++... .+.+...+..+..++...|+++.|...++.+++.. +.+...+..+...
T Consensus 26 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~ 102 (537)
T 3fp2_A 26 VQLKNRGNHFFTAKNFNEAIKYYQYAIEL--DPNEPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRASA 102 (537)
T ss_dssp HHHHHHHHHHHHTTCCC-CHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCHHHHHHHHHHHHHH--CCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHCC-CCHHHHHHHHHHH
T ss_conf 99999999999864299999999999863--89984899999999998689999999999998609-8628999999999
Q ss_pred HHCCCCHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCHHHHHHHH
Q ss_conf 27079905999997029999900399999999908990499999999987799999504999999972789859899999
Q 004487 118 YCKIRCLDLARRVFKEMPQKDSVSFNALITGFAKEGLNEEAIKLFVEMQHLGFKPSDFTFAAALSAGVGLADIALGRQVH 197 (749)
Q Consensus 118 ~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~ 197 (749)
|...|++++|...|+.+. .+....+..+..+...+....|...++.+.... |+..
T Consensus 103 ~~~~g~~~~A~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~--~~~~---------------------- 157 (537)
T 3fp2_A 103 NESLGNFTDAMFDLSVLS-LNGDFDGASIEPMLERNLNKQAMKVLNENLSKD--EGRG---------------------- 157 (537)
T ss_dssp HHHHTCHHHHHHHHHHHC------------CHHHHHHHHHHHHHHHHHCC------------------------------
T ss_pred HHHCCCHHHHHHHHHHHH-CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHC--CCCC----------------------
T ss_conf 998389999999999986-487878588999998778988999999999747--4545----------------------
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCCCC---HHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCC
Q ss_conf 99998098987457889999978079968899987329999900---099999999945992589999999887899999
Q 004487 198 AFVVKTNFVENVFVANALLDLYSKHDCVVEARKLFGEMPEVDGV---SYNVMITCYAWNEQYKESLKLFRELQFTRFDRS 274 (749)
Q Consensus 198 ~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~---~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~ 274 (749)
....|+ ...+..+....+.+.+...+......+.. .+..+...+...+
T Consensus 158 -----~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-------------------- 208 (537)
T 3fp2_A 158 -----SQVLPS----NTSLASFFGIFDSHLEVSSVNTSSNYDTAYALLSDALQRLYSATD-------------------- 208 (537)
T ss_dssp ------CCCCC----HHHHHHHHHTSCHHHHHHTSCCCCSSCSSHHHHHHHHHHHHTCSH--------------------
T ss_pred -----CCCCCH----HHHHHHHHHHCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHH--------------------
T ss_conf -----434506----757999997447499999876325646178999999987887640--------------------
Q ss_pred CCHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCC----------CH
Q ss_conf 32099899999734894899999999998358861368889999999439978999999725889933----------19
Q 004487 275 QFPFSTLLSVVANKLDLQIGRQIHTQTIVTTAISEVKVANSLVDMYAKCGRFEEAKEIFANLSHISTV----------PW 344 (749)
Q Consensus 275 ~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~----------~~ 344 (749)
-......|+++.|...|+.+.+.++. .+
T Consensus 209 ------------------------------------------~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~ 246 (537)
T 3fp2_A 209 ------------------------------------------EGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALAL 246 (537)
T ss_dssp ------------------------------------------HHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHH
T ss_pred ------------------------------------------HHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH
T ss_conf ------------------------------------------20688887999999999999987877404459999999
Q ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHC
Q ss_conf 99999999689946999999999887988689769999998235174798999999999809997253899999999913
Q 004487 345 TAMISAYVQKGNLEEALNLFIEMCRANISADQATFASILRASAELASLSLGKQLHSFVIRSGFMSNVFSGSALLDMYAKS 424 (749)
Q Consensus 345 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 424 (749)
..+...+...|++++|...|.+.... .|+...+..+...+...++++.+...+..+.+.. +.+..++..+...|...
T Consensus 247 ~~~g~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~ 323 (537)
T 3fp2_A 247 CYTGIFHFLKNNLLDAQVLLQESINL--HPTPNSYIFLALTLADKENSQEFFKFFQKAVDLN-PEYPPTYYHRGQMYFIL 323 (537)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH--CCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHC--CCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHHC
T ss_conf 99999987545578999999999866--9874699999999998037999999999975459-99879999999999866
Q ss_pred CCHHHHHHHHHHCC---CCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHH
Q ss_conf 99989999984099---998205999999999449988999999999987999899999999999861387999999999
Q 004487 425 GSLKDAIQTFKEMP---ERNIVSWNALISACAQNGDAQATLKSFEDMVQSGYQPDSVSLLSVLSACSHCGLIEEGLQYFN 501 (749)
Q Consensus 425 g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~ 501 (749)
|++++|...|+... ..+...|..+...+...|++++|...++++.... +.+...+..+...+...|++++|...++
T Consensus 324 ~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 402 (537)
T 3fp2_A 324 QDYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLKF-PTLPEVPTFFAEILTDRGDFDTAIKQYD 402 (537)
T ss_dssp TCHHHHHHHHHHHHHHCTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHCCHHHHHHHHH
T ss_conf 899999999999998599977999999999998477999999999998739-9985999999999988378899999999
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHC----------CCHHHHHHHHHHH
Q ss_conf 938842998885899999999998299778999998499999978699999999715----------9988999999998
Q 004487 502 SMTQKYKLRPKKEHYASMVDILCRSGCFDEAEKLMAQMPFEPDEIMWSSVINSCRIH----------KNLEFAKKAADQL 571 (749)
Q Consensus 502 ~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~----------g~~~~a~~~~~~~ 571 (749)
.+.....-.+.. ......+..+...+... |++++|...++++
T Consensus 403 ~a~~~~~~~~~~----------------------------~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a 454 (537)
T 3fp2_A 403 IAKRLEEVQEKI----------------------------HVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKA 454 (537)
T ss_dssp HHHHHHHHCSSC----------------------------SSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHH
T ss_pred HHHHCCCCCHHH----------------------------HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
T ss_conf 998709762446----------------------------8889999988999999764010022475799999999999
Q ss_pred HCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHC
Q ss_conf 62788899525999989988729901599999999867
Q 004487 572 FKMEKLRDAAPYVAMSNIYAVAGQWESVSQVKKAMRER 609 (749)
Q Consensus 572 ~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 609 (749)
++..| .+...+..++.+|...|++++|...+++..+.
T Consensus 455 ~~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 491 (537)
T 3fp2_A 455 CELDP-RSEQAKIGLAQLKLQMEKIDEAIELFEDSAIL 491 (537)
T ss_dssp HHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHCC-CCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_conf 97499-97899999999999851499999999999986
Done!