Query 004488
Match_columns 749
No_of_seqs 242 out of 718
Neff 4.9
Searched_HMMs 29240
Date Tue Mar 26 17:43:08 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/004488.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_1797-1801//hhsearch_pdb/004488hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4gek_A TRNA (CMO5U34)-methyltr 1.0 1 1 45.6 11.9 170 480-701 69-242 (261)
2 3htx_A HEN1; HEN1, small RNA m 1.0 1 1 38.6 11.9 128 471-622 711-841 (950)
3 3dtn_A Putative methyltransfer 1.0 1 1 38.6 9.7 176 471-701 33-211 (234)
4 2aot_A HMT, histamine N-methyl 1.0 1 1 34.4 14.7 154 444-614 11-170 (292)
5 4a6d_A Hydroxyindole O-methylt 1.0 1 1 34.4 9.8 161 469-701 167-331 (353)
6 1vl5_A Unknown conserved prote 1.0 1 1 31.8 13.6 110 472-614 28-138 (260)
7 3dp7_A SAM-dependent methyltra 1.0 1 1 30.8 13.0 167 472-702 170-340 (363)
8 3dlc_A Putative S-adenosyl-L-m 1.0 1 1 30.1 12.9 111 469-613 32-145 (219)
9 3mgg_A Methyltransferase; NYSG 1.0 1 1 29.6 11.6 102 480-613 36-139 (276)
10 3mcz_A O-methyltransferase; ad 1.0 1 1 28.7 10.5 113 471-613 168-284 (352)
No 1
>4gek_A TRNA (CMO5U34)-methyltransferase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, rossmann fold; HET: GEK; 1.50A {Escherichia coli} PDB: 1im8_A*
Probab=1.00 E-value=1 Score=45.64 Aligned_cols=170 Identities=18% Similarity=0.230 Sum_probs=88.7
Q ss_pred CCEEEEEEECCCCCCCHHHHHHHHHCCCCCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCC
Q ss_conf 77129977003566650899999744999999089956249999999848999999999999885797689987156733
Q 004488 480 ATRLHIIDFGIMYGFQWPCLIQRLSSRPGGAPKLRITGIDLPQPGFKPAERVEETGRRLAKYAETFKVPFEFNAIAQKWD 559 (749)
Q Consensus 480 ~~~VHIIDfgI~~G~QWpsLiq~LA~R~gGPP~LRITgI~~p~~gf~pae~leetG~RL~~~A~~lgVpFeF~~Ia~~~E 559 (749)
..--+|+|+|.|.|. +...|+.+ .++|..+|||||.. .+-|+.+.+++..+.. ..+.+|.. ...+
T Consensus 69 ~~~~~vLDlGcGtG~----~~~~la~~-~~~~~~~v~gvD~s------~~ml~~A~~~~~~~~~--~~~v~~~~--~D~~ 133 (261)
T 4gek_A 69 QPGTQVYDLGCSLGA----ATLSVRRN-IHHDNCKIIAIDNS------PAMIERCRRHIDAYKA--PTPVDVIE--GDIR 133 (261)
T ss_dssp CTTCEEEEETCTTTH----HHHHHHHT-CCSSSCEEEEEESC------HHHHHHHHHHHHTSCC--SSCEEEEE--SCTT
T ss_pred CCCCEEEEEECCCCH----HHHHHHHH-CCCCCCEEEEEECC------HHHHHHHHHHHHHHCC--CCEEEEEE--CCCC
T ss_conf 997989999478998----99999985-48899889999898------9999999987775245--73079963--3322
Q ss_pred CCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCHHHHHHHH-HHCCCCE-EEEEEECCCCCCCCHHHHHHHHHHHHH
Q ss_conf 34732455568966999733322322224445678089999999-9509978-999874288895716999999997799
Q 004488 560 TIQIEDLNIDSGEVLVVNCLYRFRNLLDETVVVDCPRNIVLNLI-RKMNPDV-FVLGIVNGAHSAPFFITRFREALFFYS 637 (749)
Q Consensus 560 ~i~~edL~i~~dEvLaVN~~~~L~~L~desv~~~spRd~vL~~I-R~L~P~V-fv~~e~ng~~nsp~F~tRF~EAL~~YS 637 (749)
++ ...+ .=+|-|.+.||++.++ -|..+|+.| |.|+|.- +++.+..... .+.+...+.+....
T Consensus 134 ~~-----~~~~--~d~v~~~~~l~~~~~~------~~~~~l~~i~~~LkpGG~lii~e~~~~~-~~~~~~~~~~~~~~-- 197 (261)
T 4gek_A 134 DI-----AIEN--ASMVVLNFTLQFLEPS------ERQALLDKIYQGLNPGGALVLSEKFSFE-DAKVGELLFNMHHD-- 197 (261)
T ss_dssp TC-----CCCS--EEEEEEESCGGGSCHH------HHHHHHHHHHHHEEEEEEEEEEEEBCCS-SHHHHHHHHHHHHH--
T ss_pred CC-----CCCC--CCCCEEEEEEEECCCH------HHHHHHHHHHHHCCCCCEEEEEECCCCC-CHHHHHHHHHHHHH--
T ss_conf 22-----3343--4511256552106715------6769999999873998389999646778-87787899999999--
Q ss_pred HHHHHHHHCCC-CCCH-HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCCCCCC
Q ss_conf 99997651199-9998-8999999999999967564038865446535435999998489820369
Q 004488 638 TLFDMLETNVP-REIP-ERMLIEREIFGREAMNVIACEGAERIERPETYKQWQVRNMRAGFTQLPL 701 (749)
Q Consensus 638 AlFDsLda~~p-r~~~-eR~~iEr~~lGreI~NvVAcEG~eRvER~Ety~qWq~R~~rAGF~~~pL 701 (749)
|-. ....+ .+.. .|..+ +++.++.+...++.++..|||..+.+
T Consensus 198 --~~~-~~g~s~~ei~~~~~~l------------------~~~~~~~s~~~~~~~L~~AGF~~ve~ 242 (261)
T 4gek_A 198 --FKR-ANGYSELEISQKRSML------------------ENVMLTDSVETHKARLHKAGFEHSEL 242 (261)
T ss_dssp --HHH-HTTGGGSTTHHHHHHH------------------HHHCCCBCHHHHHHHHHHHTCSEEEE
T ss_pred --HHH-HCCCCHHHHHHHHHHH------------------CCCCCCCCHHHHHHHHHHCCCCEEEE
T ss_conf --998-7599889998777654------------------03656899999999999859983899
No 2
>3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana}
Probab=1.00 E-value=1 Score=38.63 Aligned_cols=128 Identities=13% Similarity=0.190 Sum_probs=77.6
Q ss_pred HHHHHHHHCCCEEEEEEECCCCCCCHHHHHHHHHCCCCCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHHH--HHCCCC
Q ss_conf 999975420771299770035666508999997449999990899562499999998489999999999998--857976
Q 004488 471 KTIMNLAEKATRLHIIDFGIMYGFQWPCLIQRLSSRPGGAPKLRITGIDLPQPGFKPAERVEETGRRLAKYA--ETFKVP 548 (749)
Q Consensus 471 qaILeA~~g~~~VHIIDfgI~~G~QWpsLiq~LA~R~gGPP~LRITgI~~p~~gf~pae~leetG~RL~~~A--~~lgVp 548 (749)
+.|++.+.....-.|+|+|.|.|. +...|+.+ ++|.-++||||.. .+.++.+.+||.... +..+++
T Consensus 711 e~LLelL~~~~g~rVLDVGCGTG~----lai~LAr~--g~p~a~VtGVDIS------~emLe~AReRLa~~lnAkr~gl~ 778 (950)
T 3htx_A 711 EYALKHIRESSASTLVDFGCGSGS----LLDSLLDY--PTSLQTIIGVDIS------PKGLARAAKMLHVKLNKEACNVK 778 (950)
T ss_dssp HHHHHHHHHSCCSEEEEETCSSSH----HHHHHTSS--CCCCCEEEEEESC------HHHHHHHHHHHHHHTTTTCSSCS
T ss_pred HHHHHHHCCCCCCEEEEECCCCCH----HHHHHHHH--CCCCCEEEEEECC------HHHHHHHHHHHHHCCCHHHCCCC
T ss_conf 999997404698989997998789----99999984--8997769999899------99999999875430111323788
Q ss_pred EEEEECCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCHHHHHHH-HHHCCCCEEEEEEECCCCCC
Q ss_conf 899871567333473245556896699973332232222444567808999999-99509978999874288895
Q 004488 549 FEFNAIAQKWDTIQIEDLNIDSGEVLVVNCLYRFRNLLDETVVVDCPRNIVLNL-IRKMNPDVFVLGIVNGAHSA 622 (749)
Q Consensus 549 FeF~~Ia~~~E~i~~edL~i~~dEvLaVN~~~~L~~L~desv~~~spRd~vL~~-IR~L~P~Vfv~~e~ng~~ns 622 (749)
....+....+++.. ..+.+=+|-|..-++|+.+. .+..++.. .|.|+|.++++...|..+|.
T Consensus 779 -nVefiqGDa~dLp~-----~d~sFDlVV~~eVLeHL~dp------~l~~~L~eI~RvLKPG~LIISTPN~eyN~ 841 (950)
T 3htx_A 779 -SATLYDGSILEFDS-----RLHDVDIGTCLEVIEHMEED------QACEFGEKVLSLFHPKLLIVSTPNYEFNT 841 (950)
T ss_dssp -EEEEEESCTTSCCT-----TSCSCCEEEEESCGGGSCHH------HHHHHHHHHHHTTCCSEEEEEECBGGGHH
T ss_pred -CEEEEECCHHHCCC-----CCCCEEEEEEECCHHHCCHH------HHHHHHHHHHHHCCCCEEEEEECCCHHHH
T ss_conf -54999876675874-----56983499990742307848------99999999999729987999806701225
No 3
>3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei}
Probab=1.00 E-value=1 Score=38.61 Aligned_cols=176 Identities=14% Similarity=0.150 Sum_probs=89.9
Q ss_pred HHHHHHHH-CCCEEEEEEECCCCCCCHHHHHHHHHCCCCCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHCCCCE
Q ss_conf 99997542-07712997700356665089999974499999908995624999999984899999999999988579768
Q 004488 471 KTIMNLAE-KATRLHIIDFGIMYGFQWPCLIQRLSSRPGGAPKLRITGIDLPQPGFKPAERVEETGRRLAKYAETFKVPF 549 (749)
Q Consensus 471 qaILeA~~-g~~~VHIIDfgI~~G~QWpsLiq~LA~R~gGPP~LRITgI~~p~~gf~pae~leetG~RL~~~A~~lgVpF 549 (749)
+.+++.+. ......|+|+|.+.|.-- ..|+.+- |..++||||.. ...++.+.+++. ..+ ..
T Consensus 33 ~~~~~~~~~~~~~~~vLDiG~G~G~~~----~~l~~~~---~~~~v~~vD~s------~~~~~~a~~~~~----~~~-~~ 94 (234)
T 3dtn_A 33 GVSVSIASVDTENPDILDLGAGTGLLS----AFLMEKY---PEATFTLVDMS------EKMLEIAKNRFR----GNL-KV 94 (234)
T ss_dssp HHHHHTCCCSCSSCEEEEETCTTSHHH----HHHHHHC---TTCEEEEEESC------HHHHHHHHHHTC----SCT-TE
T ss_pred HHHHHHHHCCCCCCEEEEECCCCCHHH----HHHHHHC---CCCEEEEEECC------HHHHHHHHHHHC----CCC-CE
T ss_conf 999998425789985999569887999----9999849---99839999799------999999998616----489-88
Q ss_pred EEEECCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCHHHHHHHH-HHCCCCEEEEEEECCCCCCCCHHHH
Q ss_conf 998715673334732455568966999733322322224445678089999999-9509978999874288895716999
Q 004488 550 EFNAIAQKWDTIQIEDLNIDSGEVLVVNCLYRFRNLLDETVVVDCPRNIVLNLI-RKMNPDVFVLGIVNGAHSAPFFITR 628 (749)
Q Consensus 550 eF~~Ia~~~E~i~~edL~i~~dEvLaVN~~~~L~~L~desv~~~spRd~vL~~I-R~L~P~Vfv~~e~ng~~nsp~F~tR 628 (749)
+|.. ...+++.. . +..=+|-|..-++++.+. .+..+|+.+ |.|+|.-.++.......+.+.+...
T Consensus 95 ~~~~--~d~~~~~~-----~-~~fD~v~~~~~l~~~~~~------~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~ 160 (234)
T 3dtn_A 95 KYIE--ADYSKYDF-----E-EKYDMVVSALSIHHLEDE------DKKELYKRSYSILKESGIFINADLVHGETAFIENL 160 (234)
T ss_dssp EEEE--SCTTTCCC-----C-SCEEEEEEESCGGGSCHH------HHHHHHHHHHHHEEEEEEEEEEEECBCSSHHHHHH
T ss_pred EEEE--CCHHCCCC-----C-CCCEEEEEECCCCCCCHH------HHHHHHHHHHHHCCCCCEEEEEEECCCCCHHHHHH
T ss_conf 9995--74101687-----7-880599995721028978------99999999998568995899988347897135568
Q ss_pred HHHHHHHHHHHHHHHHH-CCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCCCCCC
Q ss_conf 99999779999997651-19999988999999999999967564038865446535435999998489820369
Q 004488 629 FREALFFYSTLFDMLET-NVPREIPERMLIEREIFGREAMNVIACEGAERIERPETYKQWQVRNMRAGFTQLPL 701 (749)
Q Consensus 629 F~EAL~~YSAlFDsLda-~~pr~~~eR~~iEr~~lGreI~NvVAcEG~eRvER~Ety~qWq~R~~rAGF~~~pL 701 (749)
+...+..+ +.. .++ .. ++.+.... ....++-+...|...+..|||+.+..
T Consensus 161 ~~~~~~~~------~~~~~~~---~~-----------~~~~~~~~---~~~~~~~~~~~~~~ll~~aGF~~v~~ 211 (234)
T 3dtn_A 161 NKTIWRQY------VENSGLT---EE-----------EIAAGYER---SKLDKDIEMNQQLNWLKEAGFRDVSC 211 (234)
T ss_dssp HHHHHHHH------HHTSSCC---HH-----------HHHTTC-------CCCCCBHHHHHHHHHHTTCEEEEE
T ss_pred HHHHHHHH------HHHCCCC---HH-----------HHHHHHHH---CCCCCCCCHHHHHHHHHHCCCCCEEE
T ss_conf 99999999------9836999---89-----------99999871---03346658999999999859970641
No 4
>2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold, protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A* 2aox_A* 1jqe_A* 2aow_A*
Probab=1.00 E-value=1 Score=34.42 Aligned_cols=154 Identities=12% Similarity=0.114 Sum_probs=76.0
Q ss_pred CHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH----CCCEEEEEEECCCCCCCHHHHHHHHHCCCCCCCEEEEEEEC
Q ss_conf 97889999999763078654145867699997542----07712997700356665089999974499999908995624
Q 004488 444 SAADVLKAYHLFLAACPFRKLSNFFSNKTIMNLAE----KATRLHIIDFGIMYGFQWPCLIQRLSSRPGGAPKLRITGID 519 (749)
Q Consensus 444 s~~~~lkAy~~f~~~cPf~kfa~f~ANqaILeA~~----g~~~VHIIDfgI~~G~QWpsLiq~LA~R~gGPP~LRITgI~ 519 (749)
....+...|+.|...+.-.+...-.-.+.+-+.++ .....+|+|+|.|.|.--..++..|+.+..+ ..+.+||||
T Consensus 11 d~~~y~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~VLDiG~GtG~~~~~~l~~l~~~~~~-~~v~~~~vD 89 (292)
T 2aot_A 11 DHGKYVESFRRFLNHSTEHQCMQEFMDKKLPGIIGRIGDTKSEIKILSIGGGAGEIDLQILSKVQAQYPG-VCINNEVVE 89 (292)
T ss_dssp CHHHHHHHHHHHHTTBSHHHHHHHHHHHTHHHHSSSTTTTCSEEEEEEETCTTSHHHHHHHHHHHHHSTT-CEEEEEEEC
T ss_pred CHHHHHHHHHHHHHHCCHHHHHHHHHHHHCHHHHHHCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHCCC-CEEEEEEEE
T ss_conf 5889999999999831277899999998642677514578999869997677888799999998754898-534479992
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCC-CCCCCCCEEEEEECCCCCCCCCCCCCCCCCHHH
Q ss_conf 9999999848999999999999885797689987156733347324-555689669997333223222244456780899
Q 004488 520 LPQPGFKPAERVEETGRRLAKYAETFKVPFEFNAIAQKWDTIQIED-LNIDSGEVLVVNCLYRFRNLLDETVVVDCPRNI 598 (749)
Q Consensus 520 ~p~~gf~pae~leetG~RL~~~A~~lgVpFeF~~Ia~~~E~i~~ed-L~i~~dEvLaVN~~~~L~~L~desv~~~spRd~ 598 (749)
.. .+-++...+++.+....-++.|+|... ..+++.... ....++..=+|.|..-||++.| + ..
T Consensus 90 ~S------~~ml~~a~~~~~~~~~~~~v~~~~~~~--~~~~~~~~~~~~~~~~~fD~V~~~~~l~~~~d-------~-~~ 153 (292)
T 2aot_A 90 PS------AEQIAKYKELVAKTSNLENVKFAWHKE--TSSEYQSRMLEKKELQKWDFIHMIQMLYYVKD-------I-PA 153 (292)
T ss_dssp SC------HHHHHHHHHHHHTCSSCTTEEEEEECS--CHHHHHHHHHTTTCCCCEEEEEEESCGGGCSC-------H-HH
T ss_pred CC------HHHHHHHHHHHHHCCCCCCCEEEEEEC--CHHHHHHHHCCCCCCCCEEEEEEEEEEEECCC-------H-HH
T ss_conf 99------999999999987466878505999826--65653122014467885549989136552699-------9-99
Q ss_pred HHHHH-HHCCCCEEEEE
Q ss_conf 99999-95099789998
Q 004488 599 VLNLI-RKMNPDVFVLG 614 (749)
Q Consensus 599 vL~~I-R~L~P~Vfv~~ 614 (749)
+|+.+ |-|+|.-.++.
T Consensus 154 ~l~~~~r~LkpgG~l~i 170 (292)
T 2aot_A 154 TLKFFHSLLGTNAKMLI 170 (292)
T ss_dssp HHHHHHHTEEEEEEEEE
T ss_pred HHHHHHHHCCCCCEEEE
T ss_conf 99999997088968999
No 5
>4a6d_A Hydroxyindole O-methyltransferase; melatonin, circadian clock; HET: SAM; 2.40A {Homo sapiens} PDB: 4a6e_A*
Probab=1.00 E-value=1 Score=34.41 Aligned_cols=161 Identities=18% Similarity=0.244 Sum_probs=84.1
Q ss_pred HHHHHHHHHHCCCEEEEEEECCCCCCCHHHHHHHHHCCCCCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 76999975420771299770035666508999997449999990899562499999998489999999999998857976
Q 004488 469 SNKTIMNLAEKATRLHIIDFGIMYGFQWPCLIQRLSSRPGGAPKLRITGIDLPQPGFKPAERVEETGRRLAKYAETFKVP 548 (749)
Q Consensus 469 ANqaILeA~~g~~~VHIIDfgI~~G~QWpsLiq~LA~R~gGPP~LRITgI~~p~~gf~pae~leetG~RL~~~A~~lgVp 548 (749)
....|+++..-...-+|||+|-+.|. ++.+|+.+- |.+|+|..++| +.++.+.+++. .+ ..=.
T Consensus 167 ~~~~~~~~~~~~~~~~v~DvGgG~G~----~~~~l~~~~---p~~~~~~~dlp-------~v~~~a~~~~~-~~--~~~r 229 (353)
T 4a6d_A 167 NGRSVLTAFDLSVFPLMCDLGGGAGA----LAKECMSLY---PGCKITVFDIP-------EVVWTAKQHFS-FQ--EEEQ 229 (353)
T ss_dssp HHHHHHHSSCGGGCSEEEEETCTTSH----HHHHHHHHC---SSCEEEEEECH-------HHHHHHHHHSC-C----CCS
T ss_pred HHHHHHHHCCCCCCCEEEEECCCCCH----HHHHHHHHC---CCCEEEECCCH-------HHHHHHHHHHH-HC--CCCC
T ss_conf 99999986375568768763898778----999999868---98526752578-------88999998666-40--3675
Q ss_pred EEEEECCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCHHHHHHHH-HHCCCCEEEE-EEE--CCCCCCCC
Q ss_conf 8998715673334732455568966999733322322224445678089999999-9509978999-874--28889571
Q 004488 549 FEFNAIAQKWDTIQIEDLNIDSGEVLVVNCLYRFRNLLDETVVVDCPRNIVLNLI-RKMNPDVFVL-GIV--NGAHSAPF 624 (749)
Q Consensus 549 FeF~~Ia~~~E~i~~edL~i~~dEvLaVN~~~~L~~L~desv~~~spRd~vL~~I-R~L~P~Vfv~-~e~--ng~~nsp~ 624 (749)
.+|.+- .. +.-...++=+|-+..-||+..|+. ...+|+.| +.|+|.--++ .+. +.+...|.
T Consensus 230 v~~~~g--D~-------~~~~~~~~D~~~~~~vlh~~~d~~------~~~iL~~~~~al~pgg~lli~e~~~~~~~~~~~ 294 (353)
T 4a6d_A 230 IDFQEG--DF-------FKDPLPEADLYILARVLHDWADGK------CSHLLERIYHTCKPGGGILVIESLLDEDRRGPL 294 (353)
T ss_dssp EEEEES--CT-------TTSCCCCCSEEEEESSGGGSCHHH------HHHHHHHHHHHCCTTCEEEEEECCCCTTSCCCH
T ss_pred EEEECC--CC-------CCCCCCCCEEEEEEEECCCCCHHH------HHHHHHHHHHHCCCCCEEEEEEEEECCCCCCCH
T ss_conf 366337--52-------457777741898620101599899------999999999507999889999850089999977
Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCCCCCC
Q ss_conf 69999999977999999765119999988999999999999967564038865446535435999998489820369
Q 004488 625 FITRFREALFFYSTLFDMLETNVPREIPERMLIEREIFGREAMNVIACEGAERIERPETYKQWQVRNMRAGFTQLPL 701 (749)
Q Consensus 625 F~tRF~EAL~~YSAlFDsLda~~pr~~~eR~~iEr~~lGreI~NvVAcEG~eRvER~Ety~qWq~R~~rAGF~~~pL 701 (749)
+ .++||. .=.+.+.|.+| |..+|+..+..|||+.+.+
T Consensus 295 ~-----------~~~~dl------------------------~ml~~~~g~er-----t~~e~~~ll~~AGf~~v~v 331 (353)
T 4a6d_A 295 L-----------TQLYSL------------------------NMLVQTEGQER-----TPTHYHMLLSSAGFRDFQF 331 (353)
T ss_dssp H-----------HHHHHH------------------------HHHHSSSCCCC-----CHHHHHHHHHHHTCEEEEE
T ss_pred H-----------HHHHHH------------------------HHHHHCCCCCC-----CHHHHHHHHHHCCCCEEEE
T ss_conf 8-----------999989------------------------99872899078-----9999999999779945899
No 6
>1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41
Probab=1.00 E-value=1 Score=31.80 Aligned_cols=110 Identities=13% Similarity=0.189 Sum_probs=62.3
Q ss_pred HHHHHHHCCCEEEEEEECCCCCCCHHHHHHHHHCCCCCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHCCCC-EE
Q ss_conf 99975420771299770035666508999997449999990899562499999998489999999999998857976-89
Q 004488 472 TIMNLAEKATRLHIIDFGIMYGFQWPCLIQRLSSRPGGAPKLRITGIDLPQPGFKPAERVEETGRRLAKYAETFKVP-FE 550 (749)
Q Consensus 472 aILeA~~g~~~VHIIDfgI~~G~QWpsLiq~LA~R~gGPP~LRITgI~~p~~gf~pae~leetG~RL~~~A~~lgVp-Fe 550 (749)
.|++.+.....-+|+|+|.+.|. +...|+.+- + ++||||.. .+.++.+.+++ +..+++ .+
T Consensus 28 ~l~~~l~~~~~~~vLDiGcG~G~----~~~~l~~~~--~---~v~gvD~s------~~~l~~a~~~~----~~~~~~~v~ 88 (260)
T 1vl5_A 28 KLMQIAALKGNEEVLDVATGGGH----VANAFAPFV--K---KVVAFDLT------EDILKVARAFI----EGNGHQQVE 88 (260)
T ss_dssp HHHHHHTCCSCCEEEEETCTTCH----HHHHHGGGS--S---EEEEEESC------HHHHHHHHHHH----HHTTCCSEE
T ss_pred HHHHHHCCCCCCEEEEEECCCCH----HHHHHHHHC--C---EEEEEECC------HHHHHHHHHHH----HHCCCCCEE
T ss_conf 99997188889979998278898----999999758--9---79999099------99999999999----865999649
Q ss_pred EEECCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEE
Q ss_conf 9871567333473245556896699973332232222444567808999999995099789998
Q 004488 551 FNAIAQKWDTIQIEDLNIDSGEVLVVNCLYRFRNLLDETVVVDCPRNIVLNLIRKMNPDVFVLG 614 (749)
Q Consensus 551 F~~Ia~~~E~i~~edL~i~~dEvLaVN~~~~L~~L~desv~~~spRd~vL~~IR~L~P~Vfv~~ 614 (749)
|.. ...++ +...++..=+|.|.+.++++.| +...+-+..|.|+|.-.+..
T Consensus 89 ~~~--~d~~~-----l~~~~~~fD~V~~~~~l~~~~d-------~~~~l~~~~r~LkpgG~l~~ 138 (260)
T 1vl5_A 89 YVQ--GDAEQ-----MPFTDERFHIVTCRIAAHHFPN-------PASFVSEAYRVLKKGGQLLL 138 (260)
T ss_dssp EEE--CCC-C-----CCSCTTCEEEEEEESCGGGCSC-------HHHHHHHHHHHEEEEEEEEE
T ss_pred EEE--ECHHH-----CCCCCCCEEEEEEHHHHHHCCC-------HHHHHHHHHHHCCCCCEEEE
T ss_conf 999--05776-----9999997789988435672689-------99999999998677978999
No 7
>3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus}
Probab=1.00 E-value=1 Score=30.79 Aligned_cols=167 Identities=10% Similarity=0.013 Sum_probs=80.0
Q ss_pred HHHHHHHCCCEEEEEEECCCCCCCHHHHHHHHHCCCCCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHCCC--CE
Q ss_conf 9997542077129977003566650899999744999999089956249999999848999999999999885797--68
Q 004488 472 TIMNLAEKATRLHIIDFGIMYGFQWPCLIQRLSSRPGGAPKLRITGIDLPQPGFKPAERVEETGRRLAKYAETFKV--PF 549 (749)
Q Consensus 472 aILeA~~g~~~VHIIDfgI~~G~QWpsLiq~LA~R~gGPP~LRITgI~~p~~gf~pae~leetG~RL~~~A~~lgV--pF 549 (749)
.+++.......-+|+|+|.+.|.- ...|+.+- |.+++|++|.| +.++.+.+++ +..++ ..
T Consensus 170 ~~l~~~~~~~~~~vlDvG~G~G~~----~~~l~~~~---p~~~~~~~D~~-------~~~~~a~~~~----~~~~~~~~v 231 (363)
T 3dp7_A 170 KALEIVFSHHPKRLLDIGGNTGKW----ATQCVQYN---KEVEVTIVDLP-------QQLEMMRKQT----AGLSGSERI 231 (363)
T ss_dssp HHHHHHGGGCCSEEEEESCTTCHH----HHHHHHHS---TTCEEEEEECH-------HHHHHHHHHH----TTCTTGGGE
T ss_pred HHHHHHCCCCCCEEEEECCCCCHH----HHHHHHHC---CCCEEEEEECH-------HHHHHHHHHH----HHCCCCCCE
T ss_conf 999874136899899938976899----99999859---99879998688-------8999999989----855855643
Q ss_pred EEEECCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCHHHHHHHH-HHCCCCEEEE-EEECCCCCCCCHHH
Q ss_conf 998715673334732455568966999733322322224445678089999999-9509978999-87428889571699
Q 004488 550 EFNAIAQKWDTIQIEDLNIDSGEVLVVNCLYRFRNLLDETVVVDCPRNIVLNLI-RKMNPDVFVL-GIVNGAHSAPFFIT 627 (749)
Q Consensus 550 eF~~Ia~~~E~i~~edL~i~~dEvLaVN~~~~L~~L~desv~~~spRd~vL~~I-R~L~P~Vfv~-~e~ng~~nsp~F~t 627 (749)
+|..- ...+.. +.+. +..=+|-+..-||++.++. ...+|+.+ +.|+|.-.++ .+...... +.. .
T Consensus 232 ~~~~~--d~~~~~---~~~p-~~~D~v~~~~vlh~~~~~~------~~~~l~~~~~~L~pgG~l~i~e~~~~~~-~~~-~ 297 (363)
T 3dp7_A 232 HGHGA--NLLDRD---VPFP-TGFDAVWMSQFLDCFSEEE------VISILTRVAQSIGKDSKVYIMETLWDRQ-RYE-T 297 (363)
T ss_dssp EEEEC--CCCSSS---CCCC-CCCSEEEEESCSTTSCHHH------HHHHHHHHHHHCCTTCEEEEEECCTTSC-SSH-H
T ss_pred EEEEC--CCCCCC---CCCC-CCCCEEEEECHHHHCCHHH------HHHHHHHHHHHCCCCCEEEEEEECCCCC-CCC-C
T ss_conf 89973--612467---7899-9847899833134399899------9999999999609896899986056876-443-1
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCC
Q ss_conf 999999779999997651199999889999999999999675640388654465354359999984898203699
Q 004488 628 RFREALFFYSTLFDMLETNVPREIPERMLIEREIFGREAMNVIACEGAERIERPETYKQWQVRNMRAGFTQLPLN 702 (749)
Q Consensus 628 RF~EAL~~YSAlFDsLda~~pr~~~eR~~iEr~~lGreI~NvVAcEG~eRvER~Ety~qWq~R~~rAGF~~~pLs 702 (749)
. ..+........ .+. ..+.. |.-+..+|+..+..|||+.+...
T Consensus 298 ~---------------------------~~~~~~~~~~~-~~~-~~~~~---~~~t~~e~~~ll~~AGf~~v~~~ 340 (363)
T 3dp7_A 298 A---------------------------SYCLTQISLYF-TAM-ANGNS---KMFHSDDLIRCIENAGLEVEEIQ 340 (363)
T ss_dssp H---------------------------HHHHHHHHHHH-HHS-SCSSC---CSCCHHHHHHHHHTTTEEESCCC
T ss_pred H---------------------------HHHHHHHHHHH-HHH-HCCCC---CCCCHHHHHHHHHHCCCEEEEEE
T ss_conf 2---------------------------25788740567-764-07887---63699999999998699289999
No 8
>3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis}
Probab=1.00 E-value=1 Score=30.13 Aligned_cols=111 Identities=14% Similarity=0.087 Sum_probs=62.1
Q ss_pred HHHHHHHHHHCCCEEEEEEECCCCCCCHHHHHHHHHCCCCCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 76999975420771299770035666508999997449999990899562499999998489999999999998857976
Q 004488 469 SNKTIMNLAEKATRLHIIDFGIMYGFQWPCLIQRLSSRPGGAPKLRITGIDLPQPGFKPAERVEETGRRLAKYAETFKVP 548 (749)
Q Consensus 469 ANqaILeA~~g~~~VHIIDfgI~~G~QWpsLiq~LA~R~gGPP~LRITgI~~p~~gf~pae~leetG~RL~~~A~~lgVp 548 (749)
....|++.+..... +|+|+|.+.|. +...|+.+ |..++||||.. ...++.+.+++. ..++.
T Consensus 32 ~~~~~~~~~~~~~~-~vLdiG~G~G~----~~~~l~~~----~~~~v~~~D~s------~~~~~~a~~~~~----~~~~~ 92 (219)
T 3dlc_A 32 IAENIINRFGITAG-TCIDIGSGPGA----LSIALAKQ----SDFSIRALDFS------KHMNEIALKNIA----DANLN 92 (219)
T ss_dssp HHHHHHHHHCCCEE-EEEEETCTTSH----HHHHHHHH----SEEEEEEEESC------HHHHHHHHHHHH----HTTCT
T ss_pred HHHHHHHHCCCCCC-EEEEECCCCCH----HHHHHHHC----CCCEEEEEECC------HHHHHHHHHHHH----HCCCC
T ss_conf 99999996089999-79997898878----89999975----79839999899------999999999987----50646
Q ss_pred --EEEEECCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCHHHHHHH-HHHCCCCEEEE
Q ss_conf --899871567333473245556896699973332232222444567808999999-99509978999
Q 004488 549 --FEFNAIAQKWDTIQIEDLNIDSGEVLVVNCLYRFRNLLDETVVVDCPRNIVLNL-IRKMNPDVFVL 613 (749)
Q Consensus 549 --FeF~~Ia~~~E~i~~edL~i~~dEvLaVN~~~~L~~L~desv~~~spRd~vL~~-IR~L~P~Vfv~ 613 (749)
.+|.. ...+++ ....+..=+|-|..-++++.+ +. .+|+. .+.|+|.-.++
T Consensus 93 ~~~~~~~--~d~~~~-----~~~~~~~D~v~~~~~l~~~~~-------~~-~~l~~~~~~L~pgG~l~ 145 (219)
T 3dlc_A 93 DRIQIVQ--GDVHNI-----PIEDNYADLIVSRGSVFFWED-------VA-TAFREIYRILKSGGKTY 145 (219)
T ss_dssp TTEEEEE--CBTTBC-----SSCTTCEEEEEEESCGGGCSC-------HH-HHHHHHHHHEEEEEEEE
T ss_pred CCEEEEE--CCHHHC-----CCCCCCCCEEEECCHHHHCCC-------HH-HHHHHHHHHCCCCCEEE
T ss_conf 7639998--188987-----988666338998763763368-------99-99999997678997899
No 9
>3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei}
Probab=1.00 E-value=1 Score=29.59 Aligned_cols=102 Identities=17% Similarity=0.254 Sum_probs=55.8
Q ss_pred CCEEEEEEECCCCCCCHHHHHHHHHCCCCCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHCCCC-EEEEECCCCC
Q ss_conf 771299770035666508999997449999990899562499999998489999999999998857976-8998715673
Q 004488 480 ATRLHIIDFGIMYGFQWPCLIQRLSSRPGGAPKLRITGIDLPQPGFKPAERVEETGRRLAKYAETFKVP-FEFNAIAQKW 558 (749)
Q Consensus 480 ~~~VHIIDfgI~~G~QWpsLiq~LA~R~gGPP~LRITgI~~p~~gf~pae~leetG~RL~~~A~~lgVp-FeF~~Ia~~~ 558 (749)
...-+|+|+|.+.|. +...|+.+. |..++||||.. ...++.+.+++ ...+++ .+|.. ...
T Consensus 36 ~~~~~vLDiG~G~G~----~~~~l~~~~---~~~~v~~vD~s------~~~~~~a~~~~----~~~~~~~~~~~~--~d~ 96 (276)
T 3mgg_A 36 PPGAKVLEAGCGIGA----QTVILAKNN---PDAEITSIDIS------PESLEKARENT----EKNGIKNVKFLQ--ANI 96 (276)
T ss_dssp CTTCEEEETTCTTSH----HHHHHHHHC---TTSEEEEEESC------HHHHHHHHHHH----HHTTCCSEEEEE--CCG
T ss_pred CCCCEEEEECCCCCH----HHHHHHHHC---CCCEEEEEECC------HHHHHHHHHHH----HHCCCCCCEEEE--CCC
T ss_conf 999969995688889----999999858---99879999899------99999999999----975998718998--466
Q ss_pred CCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCHHHHHHHH-HHCCCCEEEE
Q ss_conf 334732455568966999733322322224445678089999999-9509978999
Q 004488 559 DTIQIEDLNIDSGEVLVVNCLYRFRNLLDETVVVDCPRNIVLNLI-RKMNPDVFVL 613 (749)
Q Consensus 559 E~i~~edL~i~~dEvLaVN~~~~L~~L~desv~~~spRd~vL~~I-R~L~P~Vfv~ 613 (749)
++ +....+..=+|.|..-|+++.+ +. .+|+.+ +.|+|.-.++
T Consensus 97 ~~-----~~~~~~~fD~v~~~~~l~~~~~-------~~-~~l~~~~~~L~pgG~l~ 139 (276)
T 3mgg_A 97 FS-----LPFEDSSFDHIFVCFVLEHLQS-------PE-EALKSLKKVLKPGGTIT 139 (276)
T ss_dssp GG-----CCSCTTCEEEEEEESCGGGCSC-------HH-HHHHHHHHHEEEEEEEE
T ss_pred CC-----CCCCCCCEEEEEEECHHHHCCC-------HH-HHHHHHHHHCCCCCEEE
T ss_conf 66-----8888897559999061440289-------99-99999998748796899
No 10
>3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis}
Probab=1.00 E-value=1 Score=28.71 Aligned_cols=113 Identities=15% Similarity=0.123 Sum_probs=62.4
Q ss_pred HHHHHHHHCCC-EEEEEEECCCCCCCHHHHHHHHHCCCCCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHCCCC-
Q ss_conf 99997542077-1299770035666508999997449999990899562499999998489999999999998857976-
Q 004488 471 KTIMNLAEKAT-RLHIIDFGIMYGFQWPCLIQRLSSRPGGAPKLRITGIDLPQPGFKPAERVEETGRRLAKYAETFKVP- 548 (749)
Q Consensus 471 qaILeA~~g~~-~VHIIDfgI~~G~QWpsLiq~LA~R~gGPP~LRITgI~~p~~gf~pae~leetG~RL~~~A~~lgVp- 548 (749)
..|++...-.. ..+|+|+|.+.|. +...|+.+- |.+++|++|.| +.++.+.+++. ..++.
T Consensus 168 ~~~l~~~~~~~~~~~vlDvG~G~G~----~~~~l~~~~---p~~~~~~~D~~-------~~~~~a~~~~~----~~~~~~ 229 (352)
T 3mcz_A 168 VDVVSELGVFARARTVIDLAGGHGT----YLAQVLRRH---PQLTGQIWDLP-------TTRDAARKTIH----AHDLGG 229 (352)
T ss_dssp HHHHHTCGGGTTCCEEEEETCTTCH----HHHHHHHHC---TTCEEEEEECG-------GGHHHHHHHHH----HTTCGG
T ss_pred HHHHHHCCCCCCCCEEEEECCCCCH----HHHHHHHHC---CCCEEEEEECH-------HHHHHHHHHHH----HCCCCC
T ss_conf 9999848876788889996897479----999999869---99859999777-------88999999998----669888
Q ss_pred -EEEEECCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCHHHHHHHH-HHCCCCEEEE
Q ss_conf -8998715673334732455568966999733322322224445678089999999-9509978999
Q 004488 549 -FEFNAIAQKWDTIQIEDLNIDSGEVLVVNCLYRFRNLLDETVVVDCPRNIVLNLI-RKMNPDVFVL 613 (749)
Q Consensus 549 -FeF~~Ia~~~E~i~~edL~i~~dEvLaVN~~~~L~~L~desv~~~spRd~vL~~I-R~L~P~Vfv~ 613 (749)
.+|..- .+.+... ..++.+=+|-|..-||++.++. ...+|+.+ +.|+|.-.++
T Consensus 230 ~v~~~~~--d~~~~~~----~~~~~~D~v~~~~vlh~~~~~~------~~~~l~~~~~~L~pgG~l~ 284 (352)
T 3mcz_A 230 RVEFFEK--NLLDARN----FEGGAADVVMLNDCLHYFDARE------AREVIGHAAGLVKPGGALL 284 (352)
T ss_dssp GEEEEEC--CTTCGGG----GTTCCEEEEEEESCGGGSCHHH------HHHHHHHHHHTEEEEEEEE
T ss_pred CEEEEEC--CCCCCCC----CCCCCCCEEEEECCCCCCCHHH------HHHHHHHHHHHCCCCCEEE
T ss_conf 6389807--7466754----4899833899846100499999------9999999999739997899
Done!