BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 004490
         (749 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3SKS|A Chain A, Crystal Structure Of A Putative Oligoendopeptidase F From
           Bacillus Anthracis Str. Ames
          Length = 567

 Score = 33.5 bits (75), Expect = 0.40,   Method: Compositional matrix adjust.
 Identities = 23/68 (33%), Positives = 34/68 (50%), Gaps = 6/68 (8%)

Query: 403 QHSSSTGDGMQRMAECFADGLEARLAGSGTQIYTALISKHTSAADVLKAYH---LF-LAA 458
           +HS  T D   +  + F D     + G GT+ Y ALI  H+   + L+AY+   LF LA 
Sbjct: 63  RHSVDTTDAFYKEEQDFFDEFSPVVQGYGTKYYNALI--HSPFREELEAYYGKQLFALAE 120

Query: 459 CPFRKLSN 466
           C  +  S+
Sbjct: 121 CDLKTYSD 128


>pdb|1FP8|A Chain A, Structure Of The Amylomaltase From Thermus Thermophilus
           Hb8 In Space Group P21212
 pdb|1FP9|A Chain A, Structure Of Amylomaltase From Thermus Thermophilus Hb8 In
           Space Group C2
          Length = 500

 Score = 32.0 bits (71), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 13/52 (25%), Positives = 26/52 (50%), Gaps = 11/52 (21%)

Query: 459 CPFRKLSNFFSNKTIMNLAEKATRLHI-----------IDFGIMYGFQWPCL 499
            P++  S F  N  +++L   A R ++           +D+G++Y ++WP L
Sbjct: 57  SPYQSFSAFAGNPYLIDLRPLAERGYVRLEDPGFPQGRVDYGLLYAWKWPAL 108


>pdb|2OWC|A Chain A, Structure Of A Covalent Intermediate In Thermus
           Thermophilus Amylomaltase
 pdb|2OWW|A Chain A, Covalent Intermediate In Amylomaltase In Complex With The
           Acceptor Analog 4-Deoxyglucose
 pdb|2OWX|A Chain A, Thermus Thermophilus Amylomaltase At Ph 5.6
          Length = 502

 Score = 32.0 bits (71), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 13/52 (25%), Positives = 26/52 (50%), Gaps = 11/52 (21%)

Query: 459 CPFRKLSNFFSNKTIMNLAEKATRLHI-----------IDFGIMYGFQWPCL 499
            P++  S F  N  +++L   A R ++           +D+G++Y ++WP L
Sbjct: 60  SPYQSFSAFAGNPYLIDLRPLAERGYVRLEDPGFPQGRVDYGLLYAWKWPAL 111


>pdb|1CWY|A Chain A, Crystal Structure Of Amylomaltase From Thermus Aquaticus,
           A Glycosyltransferase Catalysing The Production Of Large
           Cyclic Glucans
 pdb|1ESW|A Chain A, X-Ray Structure Of Acarbose Bound To Amylomaltase From
           Thermus Aquaticus. Implications For The Synthesis Of
           Large Cyclic Glucans
          Length = 500

 Score = 32.0 bits (71), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 13/52 (25%), Positives = 26/52 (50%), Gaps = 11/52 (21%)

Query: 459 CPFRKLSNFFSNKTIMNLAEKATRLHI-----------IDFGIMYGFQWPCL 499
            P++  S F  N  +++L   A R ++           +D+G++Y ++WP L
Sbjct: 57  SPYQSFSAFAGNPYLIDLRPLAERGYVRLEDPGFPQGRVDYGLLYAWKWPAL 108


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.317    0.133    0.387 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 20,439,222
Number of Sequences: 62578
Number of extensions: 813666
Number of successful extensions: 2115
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 2115
Number of HSP's gapped (non-prelim): 6
length of query: 749
length of database: 14,973,337
effective HSP length: 106
effective length of query: 643
effective length of database: 8,340,069
effective search space: 5362664367
effective search space used: 5362664367
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)