Query 004490
Match_columns 749
No_of_seqs 252 out of 718
Neff 4.9
Searched_HMMs 46136
Date Fri Mar 29 00:17:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004490.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/004490hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF03514 GRAS: GRAS domain fam 100.0 6E-111 1E-115 916.3 40.1 370 375-746 1-374 (374)
2 PRK15451 tRNA cmo(5)U34 methyl 97.0 0.039 8.4E-07 57.7 17.7 191 457-699 34-226 (247)
3 TIGR02752 MenG_heptapren 2-hep 96.1 0.7 1.5E-05 47.1 19.4 179 471-701 35-216 (231)
4 TIGR00740 methyltransferase, p 95.6 0.51 1.1E-05 48.8 16.0 105 481-613 53-158 (239)
5 PLN02233 ubiquinone biosynthes 94.8 3.6 7.8E-05 43.7 20.0 113 472-610 64-176 (261)
6 PRK14103 trans-aconitate 2-met 94.4 0.95 2.1E-05 47.3 14.3 114 472-623 20-133 (255)
7 TIGR02716 C20_methyl_CrtF C-20 93.5 1 2.3E-05 48.4 12.9 114 470-616 138-255 (306)
8 PF13489 Methyltransf_23: Meth 93.4 1 2.2E-05 42.4 11.3 97 479-618 20-118 (161)
9 PRK06202 hypothetical protein; 92.5 2.1 4.5E-05 44.1 12.9 143 443-613 22-164 (232)
10 TIGR01934 MenG_MenH_UbiE ubiqu 92.1 14 0.0003 36.9 19.8 113 470-613 28-140 (223)
11 PF13847 Methyltransf_31: Meth 91.5 1.5 3.2E-05 42.0 9.8 105 480-613 2-107 (152)
12 COG2226 UbiE Methylase involve 90.3 20 0.00044 38.2 17.7 138 454-623 23-163 (238)
13 PRK08317 hypothetical protein; 89.1 25 0.00054 35.2 16.8 111 473-613 11-121 (241)
14 PF01209 Ubie_methyltran: ubiE 89.1 2.3 5E-05 44.7 9.6 110 472-610 38-147 (233)
15 PRK00216 ubiE ubiquinone/menaq 88.6 29 0.00063 35.0 17.6 43 473-521 43-85 (239)
16 PF13649 Methyltransf_25: Meth 88.5 1.7 3.6E-05 38.8 7.0 97 485-608 1-99 (101)
17 PLN02396 hexaprenyldihydroxybe 88.0 9.6 0.00021 42.2 13.9 101 482-616 132-236 (322)
18 PRK01683 trans-aconitate 2-met 86.0 22 0.00049 36.9 14.8 45 470-521 20-64 (258)
19 PLN02585 magnesium protoporphy 86.0 16 0.00035 40.3 14.2 103 481-614 144-248 (315)
20 PTZ00098 phosphoethanolamine N 85.6 29 0.00062 36.9 15.5 48 466-521 37-84 (263)
21 TIGR00477 tehB tellurite resis 84.6 8.9 0.00019 38.7 10.7 111 468-611 17-128 (195)
22 PF09243 Rsm22: Mitochondrial 84.1 6.8 0.00015 42.1 10.0 140 464-633 12-156 (274)
23 PRK05785 hypothetical protein; 82.8 57 0.0012 34.0 15.9 92 482-613 52-144 (226)
24 PRK12335 tellurite resistance 81.7 14 0.0003 39.7 11.3 95 484-611 123-218 (287)
25 PF12847 Methyltransf_18: Meth 81.5 3.9 8.4E-05 36.5 6.0 103 484-613 4-108 (112)
26 smart00138 MeTrc Methyltransfe 81.3 2.3 5E-05 45.3 5.2 42 480-521 98-141 (264)
27 PLN02336 phosphoethanolamine N 81.2 40 0.00087 38.6 15.5 111 471-613 256-366 (475)
28 PF08241 Methyltransf_11: Meth 80.9 6.6 0.00014 33.3 7.0 92 486-612 1-93 (95)
29 TIGR03438 probable methyltrans 80.2 19 0.00041 39.0 11.8 110 482-614 64-176 (301)
30 PRK11036 putative S-adenosyl-L 78.4 36 0.00079 35.6 12.9 111 472-613 36-146 (255)
31 PRK05134 bifunctional 3-demeth 78.1 68 0.0015 32.8 14.6 101 479-612 46-147 (233)
32 PLN02244 tocopherol O-methyltr 77.3 27 0.00059 38.6 12.1 97 481-610 118-217 (340)
33 TIGR02072 BioC biotin biosynth 76.6 87 0.0019 31.4 17.8 44 471-521 21-67 (240)
34 PRK11207 tellurite resistance 76.5 26 0.00057 35.4 10.9 109 470-611 19-129 (197)
35 COG2227 UbiG 2-polyprenyl-3-me 75.5 7.7 0.00017 41.5 6.8 99 480-611 58-156 (243)
36 PRK11873 arsM arsenite S-adeno 75.2 1.1E+02 0.0024 32.2 15.5 97 482-610 78-177 (272)
37 PF02353 CMAS: Mycolic acid cy 73.8 22 0.00048 38.4 10.0 108 471-610 52-160 (273)
38 PLN02336 phosphoethanolamine N 73.5 41 0.00088 38.6 12.7 113 471-614 27-140 (475)
39 PF03291 Pox_MCEL: mRNA cappin 70.7 25 0.00055 39.1 9.8 132 468-618 45-189 (331)
40 PRK10258 biotin biosynthesis p 70.2 1E+02 0.0022 32.0 13.7 43 470-521 31-73 (251)
41 TIGR02021 BchM-ChlM magnesium 68.4 58 0.0012 33.2 11.2 58 466-538 38-97 (219)
42 TIGR02081 metW methionine bios 66.8 69 0.0015 32.1 11.3 39 472-520 6-44 (194)
43 PRK15068 tRNA mo(5)U34 methylt 65.9 2E+02 0.0044 31.7 15.6 139 443-612 71-222 (322)
44 PF00891 Methyltransf_2: O-met 65.6 43 0.00094 34.6 9.8 43 472-521 91-133 (241)
45 PF03848 TehB: Tellurite resis 62.8 1.6E+02 0.0035 30.5 13.1 108 471-611 20-128 (192)
46 TIGR03587 Pse_Me-ase pseudamin 61.7 74 0.0016 32.7 10.5 99 484-617 46-144 (204)
47 PRK00274 ksgA 16S ribosomal RN 61.4 31 0.00066 36.9 8.0 56 457-521 13-73 (272)
48 TIGR00138 gidB 16S rRNA methyl 59.2 81 0.0018 31.8 10.1 97 482-615 43-141 (181)
49 PLN02490 MPBQ/MSBQ methyltrans 57.8 1.6E+02 0.0035 33.1 13.0 33 481-520 113-145 (340)
50 COG2230 Cfa Cyclopropane fatty 56.8 1.5E+02 0.0034 32.5 12.3 114 471-616 62-178 (283)
51 PRK15001 SAM-dependent 23S rib 55.8 1.1E+02 0.0023 34.9 11.4 109 484-616 231-340 (378)
52 PF13679 Methyltransf_32: Meth 49.2 45 0.00098 32.0 6.2 41 478-521 22-62 (141)
53 TIGR00091 tRNA (guanine-N(7)-) 49.1 84 0.0018 31.7 8.4 32 482-520 17-48 (194)
54 TIGR00452 methyltransferase, p 48.4 1.6E+02 0.0034 32.7 10.9 41 472-520 112-152 (314)
55 PRK09489 rsmC 16S ribosomal RN 47.4 2.1E+02 0.0047 31.9 12.0 106 484-617 199-304 (342)
56 TIGR03439 methyl_EasF probable 47.3 2.2E+02 0.0048 31.7 11.9 149 472-641 69-233 (319)
57 smart00650 rADc Ribosomal RNA 45.2 1E+02 0.0023 30.1 8.2 42 471-521 3-44 (169)
58 PRK06922 hypothetical protein; 44.7 1.5E+02 0.0032 36.4 10.7 111 482-614 419-536 (677)
59 PTZ00338 dimethyladenosine tra 44.5 72 0.0016 34.9 7.6 44 469-521 20-67 (294)
60 PRK07580 Mg-protoporphyrin IX 44.3 1.6E+02 0.0035 29.7 9.7 44 480-538 62-105 (230)
61 PRK10909 rsmD 16S rRNA m(2)G96 44.3 2.7E+02 0.0059 28.7 11.3 105 483-620 55-163 (199)
62 PRK00107 gidB 16S rRNA methylt 43.4 3.8E+02 0.0081 27.4 13.2 97 482-615 46-144 (187)
63 TIGR02469 CbiT precorrin-6Y C5 41.9 85 0.0018 28.0 6.5 32 483-521 21-52 (124)
64 PRK11705 cyclopropane fatty ac 39.0 2.6E+02 0.0056 31.7 11.1 53 472-538 158-210 (383)
65 PRK11088 rrmA 23S rRNA methylt 37.9 1.2E+02 0.0026 32.2 7.8 70 446-521 52-121 (272)
66 COG1341 Predicted GTPase or GT 37.0 2.9E+02 0.0062 32.0 10.9 154 467-668 92-254 (398)
67 smart00828 PKS_MT Methyltransf 36.4 2.1E+02 0.0045 29.0 9.1 98 484-612 2-100 (224)
68 COG2242 CobL Precorrin-6B meth 35.6 60 0.0013 33.6 4.9 53 474-542 27-82 (187)
69 TIGR03534 RF_mod_PrmC protein- 34.3 1.9E+02 0.0042 29.5 8.5 79 481-582 87-166 (251)
70 PRK04148 hypothetical protein; 33.0 2.5E+02 0.0055 27.6 8.5 41 473-521 8-48 (134)
71 COG4106 Tam Trans-aconitate me 32.2 1.7E+02 0.0036 31.6 7.5 112 477-624 26-137 (257)
72 PF05175 MTS: Methyltransferas 30.6 1.9E+02 0.0042 28.4 7.5 117 468-612 18-136 (170)
73 PF13552 DUF4127: Protein of u 30.4 90 0.002 36.7 5.9 69 581-652 78-154 (497)
74 PRK14896 ksgA 16S ribosomal RN 30.1 2E+02 0.0044 30.4 8.0 46 467-521 11-60 (258)
75 TIGR00755 ksgA dimethyladenosi 29.9 3.9E+02 0.0086 28.0 10.1 41 472-521 20-60 (253)
76 KOG4300 Predicted methyltransf 29.4 7.5E+02 0.016 26.7 12.4 124 475-631 70-196 (252)
77 TIGR03183 DNA_S_dndC putative 29.2 1.5E+02 0.0032 34.7 7.2 81 471-555 3-91 (447)
78 PRK14968 putative methyltransf 28.0 5.6E+02 0.012 24.7 12.2 43 481-538 23-65 (188)
79 TIGR01983 UbiG ubiquinone bios 27.1 6.5E+02 0.014 25.2 14.4 100 481-613 45-146 (224)
80 PRK00121 trmB tRNA (guanine-N( 26.2 6.4E+02 0.014 25.6 10.6 34 481-521 40-73 (202)
81 TIGR00406 prmA ribosomal prote 25.8 7E+02 0.015 26.9 11.3 66 468-551 144-211 (288)
82 KOG1270 Methyltransferases [Co 25.1 1.5E+02 0.0033 32.5 6.0 100 485-615 93-196 (282)
83 TIGR01716 RGG_Cterm transcript 25.1 1.7E+02 0.0036 29.6 6.1 55 375-429 127-182 (220)
84 TIGR02129 hisA_euk phosphoribo 24.7 80 0.0017 34.1 3.8 26 478-507 50-75 (253)
85 PRK13168 rumA 23S rRNA m(5)U19 23.5 7.6E+02 0.016 28.4 11.6 101 480-614 296-398 (443)
86 PLN02446 (5-phosphoribosyl)-5- 23.5 82 0.0018 34.2 3.6 27 478-505 55-81 (262)
87 TIGR03533 L3_gln_methyl protei 22.8 9.8E+02 0.021 25.8 13.6 50 482-548 122-171 (284)
88 PRK09328 N5-glutamine S-adenos 22.7 8.8E+02 0.019 25.2 13.2 48 479-539 106-153 (275)
89 TIGR01626 ytfJ_HI0045 conserve 22.0 1.9E+02 0.0042 29.7 5.8 90 481-582 59-159 (184)
90 PF11020 DUF2610: Domain of un 21.7 97 0.0021 28.1 3.1 22 529-550 48-69 (82)
91 PRK10867 signal recognition pa 21.7 5.7E+02 0.012 29.8 10.1 53 377-429 29-88 (433)
92 PHA03411 putative methyltransf 21.6 1.7E+02 0.0036 32.2 5.5 62 452-521 34-97 (279)
93 KOG2324 Prolyl-tRNA synthetase 21.4 1.1E+02 0.0023 35.0 4.1 38 534-572 375-413 (457)
94 PF07521 RMMBL: RNA-metabolisi 21.4 1.8E+02 0.0039 22.7 4.3 37 572-613 1-37 (43)
95 PRK03522 rumB 23S rRNA methylu 21.4 1E+03 0.022 26.0 11.6 98 482-614 174-272 (315)
96 PRK07402 precorrin-6B methylas 20.9 3.3E+02 0.0071 27.3 7.2 65 466-547 25-89 (196)
97 COG2942 N-acyl-D-glucosamine 2 20.8 6.6E+02 0.014 29.0 10.1 89 448-555 179-285 (388)
98 PRK01544 bifunctional N5-gluta 20.7 1.4E+03 0.031 26.9 16.2 44 482-538 139-182 (506)
99 smart00857 Resolvase Resolvase 20.7 7E+02 0.015 23.3 9.5 95 531-634 17-120 (148)
100 cd01822 Lysophospholipase_L1_l 20.5 7.4E+02 0.016 23.5 10.6 20 596-615 90-109 (177)
101 PRK10507 bifunctional glutathi 20.1 3E+02 0.0064 33.6 7.6 85 488-584 353-443 (619)
No 1
>PF03514 GRAS: GRAS domain family; InterPro: IPR005202 Sequence analysis of the products of the GRAS (GAI, RGA, SCR) gene family indicates that they share a variable N terminus and a highly conserved C terminus that contains five recognizable motifs []. Proteins in the GRAS family are transcription factors that seem to be involved in development and other processes. Mutation of the SCARECROW (SCR) gene results in a radial pattern defect, loss of a ground tissue layer, in the root. The PAT1 protein is involved in phytochrome A signal transduction []. GRAS proteins contain a conserved region of about 350 amino acids that can be divided in 5 motifs, found in the following order: leucine heptad repeat I, the VHIID motif, leucine heptad repeat II, the PFYRE motif and the SAW motif [, ]. Plant specific GRAS proteins have parallels in their motif structure to the animal Signal Transducers and Activators of Transcription (STAT) family of proteins [] which suggests also some parallels in their functions.
Probab=100.00 E-value=5.7e-111 Score=916.32 Aligned_cols=370 Identities=47% Similarity=0.823 Sum_probs=357.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHHHhcCCCCCcccccccCCCC---HHHHHHH
Q 004490 375 LRTLLTLCAQAVAANDRRNAYELLKQIRQHSSSTGDGMQRMAECFADGLEARLAGSGTQIYTALISKHTS---AADVLKA 451 (749)
Q Consensus 375 L~~LLl~CAqAVa~gd~~~A~~lL~~Irq~sSp~GD~~QRLA~yFaeAL~aRL~gtg~~~y~~l~s~~~s---~~e~lkA 451 (749)
|++||++||+||+.||...|+.+|++|++++||+||++||||+||++||.+||.+++++.|..+.....+ ..+++.|
T Consensus 1 L~~lLl~cA~Av~~~~~~~A~~lL~~l~~~as~~g~~~qRla~yF~eAL~~Rl~~~~~~~~~~~~~~~~~~~~~~~~~~a 80 (374)
T PF03514_consen 1 LVQLLLACAEAVAAGDFARAQELLARLRQLASPTGDPMQRLAAYFAEALAARLSGSGPGLYSALPPSSPSPSESSEQLAA 80 (374)
T ss_pred CHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHhhHHHHHhccCcccccCCCCccccccchHHHHHH
Confidence 6899999999999999999999999999999999999999999999999999999999999887554443 6789999
Q ss_pred HHHHhhhCCccchhhHhHhHHHHHhhhcCCeeEEEEeccccccchHHHHHHHhcCCCCCCeEEEeeecCCCCCCCChHHH
Q 004490 452 YHLFLAACPFRKLSNFFSNKTIMNLAEKATRLHIIDFGIMYGFQWPCLIQRLSSRPGGAPKLRITGIDLPQPGFKPAERV 531 (749)
Q Consensus 452 y~~f~~~~Pf~kfa~ftANqaILeA~~g~~~VHIIDfgI~~G~QWP~Liq~LA~R~gGPP~LRITgI~~p~~gfrpae~l 531 (749)
|++|+++|||.||||||||||||||++|+++||||||||++|+|||+|||+||.|++|||+||||||+.|.++ +...+
T Consensus 81 ~~~~~~~~P~~~fa~~taNqaIleA~~g~~~vHIID~~i~~G~QW~~LiqaLa~R~~gpp~LrIT~i~~~~~~--~~~~l 158 (374)
T PF03514_consen 81 YQLFYELSPFLKFAHFTANQAILEAFEGERRVHIIDFGIGFGVQWPSLIQALASRPGGPPSLRITGIGPPNSG--SADEL 158 (374)
T ss_pred HHHHHHHhhHHhhhhhchhHHHHHHhccCcceEEEeccCCcchHHHHHHHHHhcCCCCCCeEEEEeccCCCCC--cHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999887 68899
Q ss_pred HHHHHHHHHHHHhCCCcEEEEEc-ccCccccCcccccccCCceEEEEeccccccccccccccCCcHHHHHHHHHhcCCCE
Q 004490 532 EETGRRLAKYAETFKVPFEFNAI-AQKWDTIQIEDLNIDSGEVLVVNCLYRFRNLLDETVVVDCPRNIVLNLIRKMNPDV 610 (749)
Q Consensus 532 eeTGrRL~~~A~~~gVpFeF~~I-a~~~E~l~~edL~i~~dE~LaVN~~~~Lh~L~desv~~~spRd~vL~~IR~L~P~V 610 (749)
++||+||.+||+++||||||++| ..+||++++++|++++||+|||||+|+||||++++....+||+.||+.||+|+|+|
T Consensus 159 ~~~g~rL~~fA~~lgv~fef~~v~~~~~e~l~~~~l~~~~~E~laVn~~~~Lh~l~~~~~~~~~~~~~~L~~ir~L~P~v 238 (374)
T PF03514_consen 159 QETGRRLAEFARSLGVPFEFHPVVVESLEDLDPSMLRLRPGEALAVNCMFQLHHLLDESGALENPRDAFLRVIRSLNPKV 238 (374)
T ss_pred HHHHHHHHHHHHHcCccEEEEecccCchhhCCHHHhCccCCcEEEEEeehhhhhhccccccccchHHHHHHHHHhcCCCE
Confidence 99999999999999999999996 57999999999999999999999999999999998888889999999999999999
Q ss_pred EEEEEecCCCCcCchHHHHHHHHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHHhHhhhccCCcccccccchhhHHHH
Q 004490 611 FVLGIVNGAHSAPFFITRFREALFFYSTLFDMLETNVPREIPERMLIEREIFGREAMNVIACEGAERIERPETYKQWQVR 690 (749)
Q Consensus 611 fv~~e~ng~~nsp~F~~RF~EAL~~YSAlFDsLda~~pr~~~eR~~iEr~~fgreI~NvVAcEG~eRvER~Et~~qWq~R 690 (749)
||++|+|++||+|+|++||.|||+||+|+|||||+++|+++++|+.+|+.+||++|+|||||||.+|+||||++++|+.|
T Consensus 239 vv~~E~ea~~n~~~F~~RF~eal~yYsalfdsle~~~~~~~~~r~~~E~~~~~~eI~niVa~eg~~R~eR~e~~~~W~~r 318 (374)
T PF03514_consen 239 VVLVEQEADHNSPSFLERFREALHYYSALFDSLEACLPRDSEERLAVERLFFGREIMNIVACEGEERVERHERLEQWRRR 318 (374)
T ss_pred EEEEeecCCCCCCchHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHhhhHHHHhhhcccccccccccchhHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhCCCccccCCHHHHHHHHHHHhhcCCCCcEEEeCCCEEEEeECCceeEEEeeee
Q 004490 691 NMRAGFTQLPLNEEIMKMAKERVDTNYHKDFVIDEDSQWLLQGWKGRIVYALSTWK 746 (749)
Q Consensus 691 ~~rAGF~~lpLs~~~v~qak~ll~~~y~~~f~v~ed~~~LlLgWKgr~L~a~SaW~ 746 (749)
|.+|||+++||+..++.|||.+|+.++++||.|+++++||+|||||+||+++|+||
T Consensus 319 ~~~aGF~~~~ls~~~~~qa~~ll~~~~~~g~~v~~~~~~l~L~Wk~~pL~~~SaWr 374 (374)
T PF03514_consen 319 MRRAGFRPVPLSEFAVSQAKLLLRKFPGDGYTVEEDGGCLLLGWKGRPLVAASAWR 374 (374)
T ss_pred HHhcCCeecCCCHHHHHHHHHHHhccCCCCeEEEEcCCEEEEEeCCcEEEEEeCcC
Confidence 99999999999999999999999986668999999999999999999999999997
No 2
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=97.01 E-value=0.039 Score=57.71 Aligned_cols=191 Identities=15% Similarity=0.171 Sum_probs=96.7
Q ss_pred hhCCccchhhHhHhHHHHHhhhcCCeeEEEEeccccccchHHHHHHHhcCCCCCCeEEEeeecCCCCCCCChHHHHHHHH
Q 004490 457 AACPFRKLSNFFSNKTIMNLAEKATRLHIIDFGIMYGFQWPCLIQRLSSRPGGAPKLRITGIDLPQPGFKPAERVEETGR 536 (749)
Q Consensus 457 ~~~Pf~kfa~ftANqaILeA~~g~~~VHIIDfgI~~G~QWP~Liq~LA~R~gGPP~LRITgI~~p~~gfrpae~leeTGr 536 (749)
...|.....|-.+...+-..+. ..-+|+|+|.+.|.--.. |+.+- ..|..++||||.. .+.++.+.+
T Consensus 34 ~~~p~y~~~~~~~~~~~~~~~~--~~~~vLDlGcGtG~~~~~----l~~~~-~~~~~~v~gvD~S------~~ml~~A~~ 100 (247)
T PRK15451 34 RSVPGYSNIISMIGMLAERFVQ--PGTQVYDLGCSLGAATLS----VRRNI-HHDNCKIIAIDNS------PAMIERCRR 100 (247)
T ss_pred hcCCChHHHHHHHHHHHHHhCC--CCCEEEEEcccCCHHHHH----HHHhc-CCCCCeEEEEeCC------HHHHHHHHH
Confidence 3456666555554443222222 335799999999963333 33321 1245799999963 345666656
Q ss_pred HHHHHHHhCCCcEEEEEcccCccccCcccccccCCceEEEEeccccccccccccccCCcHHHHHHHH-HhcCCC-EEEEE
Q 004490 537 RLAKYAETFKVPFEFNAIAQKWDTIQIEDLNIDSGEVLVVNCLYRFRNLLDETVVVDCPRNIVLNLI-RKMNPD-VFVLG 614 (749)
Q Consensus 537 RL~~~A~~~gVpFeF~~Ia~~~E~l~~edL~i~~dE~LaVN~~~~Lh~L~desv~~~spRd~vL~~I-R~L~P~-Vfv~~ 614 (749)
++.++.. ...++|. ...++++.. ....+++ |.+.|||+.++ .+..+|+.| +.|+|. +++++
T Consensus 101 ~~~~~~~--~~~v~~~--~~d~~~~~~-----~~~D~vv--~~~~l~~l~~~------~~~~~l~~i~~~LkpGG~l~l~ 163 (247)
T PRK15451 101 HIDAYKA--PTPVDVI--EGDIRDIAI-----ENASMVV--LNFTLQFLEPS------ERQALLDKIYQGLNPGGALVLS 163 (247)
T ss_pred HHHhcCC--CCCeEEE--eCChhhCCC-----CCCCEEe--hhhHHHhCCHH------HHHHHHHHHHHhcCCCCEEEEE
Confidence 5544321 1134443 233333322 2223433 45678887542 245666665 678997 45555
Q ss_pred EecCCCCcCchHHHHHHHHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHHhHhhhccCCcccccccchhhHHHHHHhC
Q 004490 615 IVNGAHSAPFFITRFREALFFYSTLFDMLETNVPREIPERMLIEREIFGREAMNVIACEGAERIERPETYKQWQVRNMRA 694 (749)
Q Consensus 615 e~ng~~nsp~F~~RF~EAL~~YSAlFDsLda~~pr~~~eR~~iEr~~fgreI~NvVAcEG~eRvER~Et~~qWq~R~~rA 694 (749)
+.-... .+....++.+....|. .....+ ...+++. .... +++-++++..+...++++|
T Consensus 164 e~~~~~-~~~~~~~~~~~~~~~~-----~~~g~s-----~~ei~~~--~~~~---------~~~~~~~~~~~~~~~L~~a 221 (247)
T PRK15451 164 EKFSFE-DAKVGELLFNMHHDFK-----RANGYS-----ELEISQK--RSML---------ENVMLTDSVETHKARLHKA 221 (247)
T ss_pred EecCCC-cchhHHHHHHHHHHHH-----HHcCCC-----HHHHHHH--HHHH---------HhhcccCCHHHHHHHHHHc
Confidence 532222 2222333333222221 111221 1122221 1112 2345678888899999999
Q ss_pred CCccc
Q 004490 695 GFTQL 699 (749)
Q Consensus 695 GF~~l 699 (749)
||+.+
T Consensus 222 GF~~v 226 (247)
T PRK15451 222 GFEHS 226 (247)
T ss_pred CchhH
Confidence 99974
No 3
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase. MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.
Probab=96.09 E-value=0.7 Score=47.13 Aligned_cols=179 Identities=15% Similarity=0.180 Sum_probs=85.9
Q ss_pred HHHHHhhhcCCeeEEEEeccccccchHHHHHHHhcCCCCCCeEEEeeecCCCCCCCChHHHHHHHHHHHHHHHhCCCc-E
Q 004490 471 KTIMNLAEKATRLHIIDFGIMYGFQWPCLIQRLSSRPGGAPKLRITGIDLPQPGFKPAERVEETGRRLAKYAETFKVP-F 549 (749)
Q Consensus 471 qaILeA~~g~~~VHIIDfgI~~G~QWP~Liq~LA~R~gGPP~LRITgI~~p~~gfrpae~leeTGrRL~~~A~~~gVp-F 549 (749)
+.++..+.-...-+|+|+|.+.|.- ...|+.+ .+|..+|||||.. .+.++.+.+++. ..+++ .
T Consensus 35 ~~~l~~l~~~~~~~vLDiGcG~G~~----~~~la~~--~~~~~~v~gvD~s------~~~~~~a~~~~~----~~~~~~v 98 (231)
T TIGR02752 35 KDTMKRMNVQAGTSALDVCCGTADW----SIALAEA--VGPEGHVIGLDFS------ENMLSVGRQKVK----DAGLHNV 98 (231)
T ss_pred HHHHHhcCCCCCCEEEEeCCCcCHH----HHHHHHH--hCCCCEEEEEECC------HHHHHHHHHHHH----hcCCCce
Confidence 4455555434445899999999962 2334433 1245689999963 344555554443 23332 2
Q ss_pred EEEEcccCccccCcccccccCCceEEEEeccccccccccccccCCcHHHHHH-HHHhcCCCEEEEEEecCCCCcCchHHH
Q 004490 550 EFNAIAQKWDTIQIEDLNIDSGEVLVVNCLYRFRNLLDETVVVDCPRNIVLN-LIRKMNPDVFVLGIVNGAHSAPFFITR 628 (749)
Q Consensus 550 eF~~Ia~~~E~l~~edL~i~~dE~LaVN~~~~Lh~L~desv~~~spRd~vL~-~IR~L~P~Vfv~~e~ng~~nsp~F~~R 628 (749)
+| +....+++.. ....=++|+ +.+.+||+.+ + ..+|+ ..|.|+|.-.++....+..+.+.
T Consensus 99 ~~--~~~d~~~~~~---~~~~fD~V~--~~~~l~~~~~-------~-~~~l~~~~~~Lk~gG~l~~~~~~~~~~~~---- 159 (231)
T TIGR02752 99 EL--VHGNAMELPF---DDNSFDYVT--IGFGLRNVPD-------Y-MQVLREMYRVVKPGGKVVCLETSQPTIPG---- 159 (231)
T ss_pred EE--EEechhcCCC---CCCCccEEE--EecccccCCC-------H-HHHHHHHHHHcCcCeEEEEEECCCCCChH----
Confidence 22 2222222221 111113444 3455677643 2 34555 45779998655443333333332
Q ss_pred HHHHHHHHHH-HHHHhhhcCCCCCHHHHHHHHHHHHHHHhHhhhccCCcccccccchhhHHHHHHhCCCccccC
Q 004490 629 FREALFFYST-LFDMLETNVPREIPERMLIEREIFGREAMNVIACEGAERIERPETYKQWQVRNMRAGFTQLPL 701 (749)
Q Consensus 629 F~EAL~~YSA-lFDsLda~~pr~~~eR~~iEr~~fgreI~NvVAcEG~eRvER~Et~~qWq~R~~rAGF~~lpL 701 (749)
++..+.+|.. +.-.+...+.+.. .+...+...+ .+.-+.++++..+..|||..+.+
T Consensus 160 ~~~~~~~~~~~~~p~~~~~~~~~~-----~~~~~~~~~~------------~~~~~~~~l~~~l~~aGf~~~~~ 216 (231)
T TIGR02752 160 FKQLYFFYFKYIMPLFGKLFAKSY-----KEYSWLQEST------------RDFPGMDELAEMFQEAGFKDVEV 216 (231)
T ss_pred HHHHHHHHHcChhHHhhHHhcCCH-----HHHHHHHHHH------------HHcCCHHHHHHHHHHcCCCeeEE
Confidence 3443333321 1111222221111 1111111221 22335578999999999987644
No 4
>TIGR00740 methyltransferase, putative. A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.
Probab=95.57 E-value=0.51 Score=48.82 Aligned_cols=105 Identities=22% Similarity=0.351 Sum_probs=59.2
Q ss_pred CeeEEEEeccccccchHHHHHHHhcCCCCCCeEEEeeecCCCCCCCChHHHHHHHHHHHHHHHhCCCcEEEEEcccCccc
Q 004490 481 TRLHIIDFGIMYGFQWPCLIQRLSSRPGGAPKLRITGIDLPQPGFKPAERVEETGRRLAKYAETFKVPFEFNAIAQKWDT 560 (749)
Q Consensus 481 ~~VHIIDfgI~~G~QWP~Liq~LA~R~gGPP~LRITgI~~p~~gfrpae~leeTGrRL~~~A~~~gVpFeF~~Ia~~~E~ 560 (749)
..-+|+|+|.+.|. ++..|+.+- ..|..++||||+. .+.++.+.+++.++.. +...+|. ...+++
T Consensus 53 ~~~~iLDlGcG~G~----~~~~l~~~~-~~p~~~v~gvD~s------~~ml~~a~~~~~~~~~--~~~v~~~--~~d~~~ 117 (239)
T TIGR00740 53 PDSNVYDLGCSRGA----ATLSARRNI-NQPNVKIIGIDNS------QPMVERCRQHIAAYHS--EIPVEIL--CNDIRH 117 (239)
T ss_pred CCCEEEEecCCCCH----HHHHHHHhc-CCCCCeEEEEeCC------HHHHHHHHHHHHhcCC--CCCeEEE--ECChhh
Confidence 44589999999994 444455442 1256899999963 3456666666544321 2234443 233433
Q ss_pred cCcccccccCCceEEEEeccccccccccccccCCcHHHHHHHH-HhcCCCEEEE
Q 004490 561 IQIEDLNIDSGEVLVVNCLYRFRNLLDETVVVDCPRNIVLNLI-RKMNPDVFVL 613 (749)
Q Consensus 561 l~~edL~i~~dE~LaVN~~~~Lh~L~desv~~~spRd~vL~~I-R~L~P~Vfv~ 613 (749)
+.. .... +|-|.+.|||+.++ .+..+|+.| |.|+|.-.++
T Consensus 118 ~~~-----~~~d--~v~~~~~l~~~~~~------~~~~~l~~i~~~LkpgG~l~ 158 (239)
T TIGR00740 118 VEI-----KNAS--MVILNFTLQFLPPE------DRIALLTKIYEGLNPNGVLV 158 (239)
T ss_pred CCC-----CCCC--EEeeecchhhCCHH------HHHHHHHHHHHhcCCCeEEE
Confidence 332 2223 34466678888543 134566655 6789986443
No 5
>PLN02233 ubiquinone biosynthesis methyltransferase
Probab=94.82 E-value=3.6 Score=43.67 Aligned_cols=113 Identities=18% Similarity=0.223 Sum_probs=62.3
Q ss_pred HHHHhhhcCCeeEEEEeccccccchHHHHHHHhcCCCCCCeEEEeeecCCCCCCCChHHHHHHHHHHHHHHHhCCCcEEE
Q 004490 472 TIMNLAEKATRLHIIDFGIMYGFQWPCLIQRLSSRPGGAPKLRITGIDLPQPGFKPAERVEETGRRLAKYAETFKVPFEF 551 (749)
Q Consensus 472 aILeA~~g~~~VHIIDfgI~~G~QWP~Liq~LA~R~gGPP~LRITgI~~p~~gfrpae~leeTGrRL~~~A~~~gVpFeF 551 (749)
.+++.+.-...-+|+|+|.|.|. +...|+.+- +|.-+|||||.. .+.++.+.++....++...-..+|
T Consensus 64 ~~~~~~~~~~~~~VLDlGcGtG~----~~~~la~~~--~~~~~V~gvD~S------~~ml~~A~~r~~~~~~~~~~~i~~ 131 (261)
T PLN02233 64 MAVSWSGAKMGDRVLDLCCGSGD----LAFLLSEKV--GSDGKVMGLDFS------SEQLAVAASRQELKAKSCYKNIEW 131 (261)
T ss_pred HHHHHhCCCCCCEEEEECCcCCH----HHHHHHHHh--CCCCEEEEEECC------HHHHHHHHHHhhhhhhccCCCeEE
Confidence 33444433445689999999997 334555542 234589999963 455666655543222222223333
Q ss_pred EEcccCccccCcccccccCCceEEEEeccccccccccccccCCcHHHHHHHHHhcCCCE
Q 004490 552 NAIAQKWDTIQIEDLNIDSGEVLVVNCLYRFRNLLDETVVVDCPRNIVLNLIRKMNPDV 610 (749)
Q Consensus 552 ~~Ia~~~E~l~~edL~i~~dE~LaVN~~~~Lh~L~desv~~~spRd~vL~~IR~L~P~V 610 (749)
.. ...+ ++....+.+=+|-|.+.|||+.| |...+-+..|-|+|.-
T Consensus 132 ~~--~d~~-----~lp~~~~sfD~V~~~~~l~~~~d-------~~~~l~ei~rvLkpGG 176 (261)
T PLN02233 132 IE--GDAT-----DLPFDDCYFDAITMGYGLRNVVD-------RLKAMQEMYRVLKPGS 176 (261)
T ss_pred EE--cccc-----cCCCCCCCEeEEEEecccccCCC-------HHHHHHHHHHHcCcCc
Confidence 22 2223 23333344545667788888753 3444444557899984
No 6
>PRK14103 trans-aconitate 2-methyltransferase; Provisional
Probab=94.38 E-value=0.95 Score=47.33 Aligned_cols=114 Identities=18% Similarity=0.212 Sum_probs=62.9
Q ss_pred HHHHhhhcCCeeEEEEeccccccchHHHHHHHhcCCCCCCeEEEeeecCCCCCCCChHHHHHHHHHHHHHHHhCCCcEEE
Q 004490 472 TIMNLAEKATRLHIIDFGIMYGFQWPCLIQRLSSRPGGAPKLRITGIDLPQPGFKPAERVEETGRRLAKYAETFKVPFEF 551 (749)
Q Consensus 472 aILeA~~g~~~VHIIDfgI~~G~QWP~Liq~LA~R~gGPP~LRITgI~~p~~gfrpae~leeTGrRL~~~A~~~gVpFeF 551 (749)
.+++.+.-...-+|+|+|.+.|. +...|+.+- |..++||||.. ...+ +.|+..++.|.
T Consensus 20 ~ll~~l~~~~~~~vLDlGcG~G~----~~~~l~~~~---p~~~v~gvD~s------~~~~--------~~a~~~~~~~~- 77 (255)
T PRK14103 20 DLLARVGAERARRVVDLGCGPGN----LTRYLARRW---PGAVIEALDSS------PEMV--------AAARERGVDAR- 77 (255)
T ss_pred HHHHhCCCCCCCEEEEEcCCCCH----HHHHHHHHC---CCCEEEEEECC------HHHH--------HHHHhcCCcEE-
Confidence 45666654556789999999993 455666653 34689999963 2223 33344455542
Q ss_pred EEcccCccccCcccccccCCceEEEEeccccccccccccccCCcHHHHHHHHHhcCCCEEEEEEecCCCCcC
Q 004490 552 NAIAQKWDTIQIEDLNIDSGEVLVVNCLYRFRNLLDETVVVDCPRNIVLNLIRKMNPDVFVLGIVNGAHSAP 623 (749)
Q Consensus 552 ~~Ia~~~E~l~~edL~i~~dE~LaVN~~~~Lh~L~desv~~~spRd~vL~~IR~L~P~Vfv~~e~ng~~nsp 623 (749)
. ...+++. ..+.+=+|-|.+.|||+.| +...+-+..+.|+|.-.++....++...+
T Consensus 78 -~--~d~~~~~------~~~~fD~v~~~~~l~~~~d-------~~~~l~~~~~~LkpgG~l~~~~~~~~~~~ 133 (255)
T PRK14103 78 -T--GDVRDWK------PKPDTDVVVSNAALQWVPE-------HADLLVRWVDELAPGSWIAVQVPGNFDAP 133 (255)
T ss_pred -E--cChhhCC------CCCCceEEEEehhhhhCCC-------HHHHHHHHHHhCCCCcEEEEEcCCCcCCh
Confidence 1 1222221 1123334445556778753 33444445577999865544444443444
No 7
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU. Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.
Probab=93.48 E-value=1 Score=48.37 Aligned_cols=114 Identities=13% Similarity=0.100 Sum_probs=62.6
Q ss_pred hHHHHHhhhcCCeeEEEEeccccccchHHHHHHHhcCCCCCCeEEEeeecCCCCCCCChHHHHHHHHHHHHHHHhCCCc-
Q 004490 470 NKTIMNLAEKATRLHIIDFGIMYGFQWPCLIQRLSSRPGGAPKLRITGIDLPQPGFKPAERVEETGRRLAKYAETFKVP- 548 (749)
Q Consensus 470 NqaILeA~~g~~~VHIIDfgI~~G~QWP~Liq~LA~R~gGPP~LRITgI~~p~~gfrpae~leeTGrRL~~~A~~~gVp- 548 (749)
.+.|++.+.-...-+|+|+|-+.|. +...++++. |.+++|+++.| +.++.+.++ ++..|+.
T Consensus 138 ~~~l~~~~~~~~~~~vlDiG~G~G~----~~~~~~~~~---p~~~~~~~D~~-------~~~~~a~~~----~~~~gl~~ 199 (306)
T TIGR02716 138 IQLLLEEAKLDGVKKMIDVGGGIGD----ISAAMLKHF---PELDSTILNLP-------GAIDLVNEN----AAEKGVAD 199 (306)
T ss_pred HHHHHHHcCCCCCCEEEEeCCchhH----HHHHHHHHC---CCCEEEEEecH-------HHHHHHHHH----HHhCCccc
Confidence 5667777765566799999999993 444555553 67899999863 345544443 4444543
Q ss_pred -EEEEEcccCccccCcccccccCCceEEEEeccccccccccccccCCcHHHHHHHH-HhcCCC-EEEEEEe
Q 004490 549 -FEFNAIAQKWDTIQIEDLNIDSGEVLVVNCLYRFRNLLDETVVVDCPRNIVLNLI-RKMNPD-VFVLGIV 616 (749)
Q Consensus 549 -FeF~~Ia~~~E~l~~edL~i~~dE~LaVN~~~~Lh~L~desv~~~spRd~vL~~I-R~L~P~-Vfv~~e~ 616 (749)
++|... ...+. .+...+++++. ..||+..++ ....+|+.+ +.|+|. .+++.+.
T Consensus 200 rv~~~~~--d~~~~-----~~~~~D~v~~~--~~lh~~~~~------~~~~il~~~~~~L~pgG~l~i~d~ 255 (306)
T TIGR02716 200 RMRGIAV--DIYKE-----SYPEADAVLFC--RILYSANEQ------LSTIMCKKAFDAMRSGGRLLILDM 255 (306)
T ss_pred eEEEEec--CccCC-----CCCCCCEEEeE--hhhhcCChH------HHHHHHHHHHHhcCCCCEEEEEEe
Confidence 344332 22111 11123343332 345555432 124567665 689996 3444443
No 8
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C ....
Probab=93.43 E-value=1 Score=42.42 Aligned_cols=97 Identities=24% Similarity=0.399 Sum_probs=55.0
Q ss_pred cCCeeEEEEeccccccchHHHHHHHhcCCCCCCeEEEeeecCCCCCCCChHHHHHHHHHHHHHHHhCCCcEEEEEcccCc
Q 004490 479 KATRLHIIDFGIMYGFQWPCLIQRLSSRPGGAPKLRITGIDLPQPGFKPAERVEETGRRLAKYAETFKVPFEFNAIAQKW 558 (749)
Q Consensus 479 g~~~VHIIDfgI~~G~QWP~Liq~LA~R~gGPP~LRITgI~~p~~gfrpae~leeTGrRL~~~A~~~gVpFeF~~Ia~~~ 558 (749)
..+.-.|+|+|.+.| .| .+.|+.+ |. ++|||+.. ...++. ..+.+.-....
T Consensus 20 ~~~~~~vLDiGcG~G-~~---~~~l~~~--~~---~~~g~D~~------~~~~~~-----------~~~~~~~~~~~--- 70 (161)
T PF13489_consen 20 LKPGKRVLDIGCGTG-SF---LRALAKR--GF---EVTGVDIS------PQMIEK-----------RNVVFDNFDAQ--- 70 (161)
T ss_dssp TTTTSEEEEESSTTS-HH---HHHHHHT--TS---EEEEEESS------HHHHHH-----------TTSEEEEEECH---
T ss_pred cCCCCEEEEEcCCCC-HH---HHHHHHh--CC---EEEEEECC------HHHHhh-----------hhhhhhhhhhh---
Confidence 466779999999999 44 4445544 22 99999953 222222 22332221111
Q ss_pred cccCcccccccCCceEEEEeccccccccccccccCCcHHHHHHHH-HhcCCCE-EEEEEecC
Q 004490 559 DTIQIEDLNIDSGEVLVVNCLYRFRNLLDETVVVDCPRNIVLNLI-RKMNPDV-FVLGIVNG 618 (749)
Q Consensus 559 E~l~~edL~i~~dE~LaVN~~~~Lh~L~desv~~~spRd~vL~~I-R~L~P~V-fv~~e~ng 618 (749)
+.....+-+=+|-|...|+|+.| |. .+|+.| +.|+|.- +++.+.+.
T Consensus 71 ------~~~~~~~~fD~i~~~~~l~~~~d-------~~-~~l~~l~~~LkpgG~l~~~~~~~ 118 (161)
T PF13489_consen 71 ------DPPFPDGSFDLIICNDVLEHLPD-------PE-EFLKELSRLLKPGGYLVISDPNR 118 (161)
T ss_dssp ------THHCHSSSEEEEEEESSGGGSSH-------HH-HHHHHHHHCEEEEEEEEEEEEBT
T ss_pred ------hhhccccchhhHhhHHHHhhccc-------HH-HHHHHHHHhcCCCCEEEEEEcCC
Confidence 11122344556667788999874 34 455555 6699964 44445544
No 9
>PRK06202 hypothetical protein; Provisional
Probab=92.49 E-value=2.1 Score=44.09 Aligned_cols=143 Identities=17% Similarity=0.100 Sum_probs=70.1
Q ss_pred CCHHHHHHHHHHHhhhCCccchhhHhHhHHHHHhhhcCCeeEEEEeccccccchHHHHHHHhcCCCCCCeEEEeeecCCC
Q 004490 443 TSAADVLKAYHLFLAACPFRKLSNFFSNKTIMNLAEKATRLHIIDFGIMYGFQWPCLIQRLSSRPGGAPKLRITGIDLPQ 522 (749)
Q Consensus 443 ~s~~e~lkAy~~f~~~~Pf~kfa~ftANqaILeA~~g~~~VHIIDfgI~~G~QWP~Liq~LA~R~gGPP~LRITgI~~p~ 522 (749)
..+.++.+.|+.|-.+-++..--+-+-.+.+...+...+...|+|+|.|.|. +...|.....+ .| |..+|||||..
T Consensus 22 ~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~l~~~~~~~iLDlGcG~G~-~~~~L~~~~~~-~g-~~~~v~gvD~s- 97 (232)
T PRK06202 22 CDPARLDRTYAGFRRVNRIVAGWRGLYRRLLRPALSADRPLTLLDIGCGGGD-LAIDLARWARR-DG-LRLEVTAIDPD- 97 (232)
T ss_pred cCHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHhcCCCCCcEEEEeccCCCH-HHHHHHHHHHh-CC-CCcEEEEEcCC-
Confidence 3455565666555444333221112222333223333456789999999996 33333322221 12 45799999963
Q ss_pred CCCCChHHHHHHHHHHHHHHHhCCCcEEEEEcccCccccCcccccccCCceEEEEeccccccccccccccCCcHHHHHHH
Q 004490 523 PGFKPAERVEETGRRLAKYAETFKVPFEFNAIAQKWDTIQIEDLNIDSGEVLVVNCLYRFRNLLDETVVVDCPRNIVLNL 602 (749)
Q Consensus 523 ~gfrpae~leeTGrRL~~~A~~~gVpFeF~~Ia~~~E~l~~edL~i~~dE~LaVN~~~~Lh~L~desv~~~spRd~vL~~ 602 (749)
.+.++.+.+++ ..-++.+..... +. +...++.+=+|-|.+.|||+.|+. ...+|+.
T Consensus 98 -----~~~l~~a~~~~----~~~~~~~~~~~~----~~-----l~~~~~~fD~V~~~~~lhh~~d~~------~~~~l~~ 153 (232)
T PRK06202 98 -----PRAVAFARANP----RRPGVTFRQAVS----DE-----LVAEGERFDVVTSNHFLHHLDDAE------VVRLLAD 153 (232)
T ss_pred -----HHHHHHHHhcc----ccCCCeEEEEec----cc-----ccccCCCccEEEECCeeecCChHH------HHHHHHH
Confidence 23343333221 122455443211 11 111223444555667799997631 3457777
Q ss_pred HHhcCCCEEEE
Q 004490 603 IRKMNPDVFVL 613 (749)
Q Consensus 603 IR~L~P~Vfv~ 613 (749)
+.++--.++++
T Consensus 154 ~~r~~~~~~~i 164 (232)
T PRK06202 154 SAALARRLVLH 164 (232)
T ss_pred HHHhcCeeEEE
Confidence 76544345544
No 10
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.
Probab=92.11 E-value=14 Score=36.87 Aligned_cols=113 Identities=16% Similarity=0.285 Sum_probs=58.9
Q ss_pred hHHHHHhhhcCCeeEEEEeccccccchHHHHHHHhcCCCCCCeEEEeeecCCCCCCCChHHHHHHHHHHHHHHHhCCCcE
Q 004490 470 NKTIMNLAEKATRLHIIDFGIMYGFQWPCLIQRLSSRPGGAPKLRITGIDLPQPGFKPAERVEETGRRLAKYAETFKVPF 549 (749)
Q Consensus 470 NqaILeA~~g~~~VHIIDfgI~~G~QWP~Liq~LA~R~gGPP~LRITgI~~p~~gfrpae~leeTGrRL~~~A~~~gVpF 549 (749)
-+.+++.+.-....+|+|+|.+.|. +...++.+ +|+..++|||+.. ...++.+.+++. .+-..
T Consensus 28 ~~~~~~~~~~~~~~~vldiG~G~G~----~~~~~~~~--~~~~~~~~~iD~~------~~~~~~~~~~~~-----~~~~i 90 (223)
T TIGR01934 28 RRRAVKLIGVFKGQKVLDVACGTGD----LAIELAKS--APDRGKVTGVDFS------SEMLEVAKKKSE-----LPLNI 90 (223)
T ss_pred HHHHHHHhccCCCCeEEEeCCCCCh----hHHHHHHh--cCCCceEEEEECC------HHHHHHHHHHhc-----cCCCc
Confidence 3455666655567899999999985 33334433 2334789999863 233444444432 22223
Q ss_pred EEEEcccCccccCcccccccCCceEEEEeccccccccccccccCCcHHHHHHHHHhcCCCEEEE
Q 004490 550 EFNAIAQKWDTIQIEDLNIDSGEVLVVNCLYRFRNLLDETVVVDCPRNIVLNLIRKMNPDVFVL 613 (749)
Q Consensus 550 eF~~Ia~~~E~l~~edL~i~~dE~LaVN~~~~Lh~L~desv~~~spRd~vL~~IR~L~P~Vfv~ 613 (749)
.|.. ....++. ...+.+=+|-|.+.+||+.+ +...+-+..+.|+|.-.++
T Consensus 91 ~~~~--~d~~~~~-----~~~~~~D~i~~~~~~~~~~~-------~~~~l~~~~~~L~~gG~l~ 140 (223)
T TIGR01934 91 EFIQ--ADAEALP-----FEDNSFDAVTIAFGLRNVTD-------IQKALREMYRVLKPGGRLV 140 (223)
T ss_pred eEEe--cchhcCC-----CCCCcEEEEEEeeeeCCccc-------HHHHHHHHHHHcCCCcEEE
Confidence 3332 1222221 12223334445566677643 3443444556789985443
No 11
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A ....
Probab=91.45 E-value=1.5 Score=42.01 Aligned_cols=105 Identities=21% Similarity=0.351 Sum_probs=57.9
Q ss_pred CCeeEEEEeccccccchHHHHHHHhcCCCCCCeEEEeeecCCCCCCCChHHHHHHHHHHHHHHHhCCCc-EEEEEcccCc
Q 004490 480 ATRLHIIDFGIMYGFQWPCLIQRLSSRPGGAPKLRITGIDLPQPGFKPAERVEETGRRLAKYAETFKVP-FEFNAIAQKW 558 (749)
Q Consensus 480 ~~~VHIIDfgI~~G~QWP~Liq~LA~R~gGPP~LRITgI~~p~~gfrpae~leeTGrRL~~~A~~~gVp-FeF~~Ia~~~ 558 (749)
.+..+|+|+|.+.|..=. .|+.+- .|..+|||||.. .+.+ .+..+.+++.+++ .+|.. ..+
T Consensus 2 ~~~~~iLDlGcG~G~~~~----~l~~~~--~~~~~i~gvD~s------~~~i----~~a~~~~~~~~~~ni~~~~--~d~ 63 (152)
T PF13847_consen 2 KSNKKILDLGCGTGRLLI----QLAKEL--NPGAKIIGVDIS------EEMI----EYAKKRAKELGLDNIEFIQ--GDI 63 (152)
T ss_dssp TTTSEEEEET-TTSHHHH----HHHHHS--TTTSEEEEEESS------HHHH----HHHHHHHHHTTSTTEEEEE--SBT
T ss_pred CCCCEEEEecCcCcHHHH----HHHHhc--CCCCEEEEEECc------HHHH----HHhhcccccccccccceEE--eeh
Confidence 356799999999995433 344221 124569999963 3333 4445566777887 55544 344
Q ss_pred cccCcccccccCCceEEEEeccccccccccccccCCcHHHHHHHHHhcCCCEEEE
Q 004490 559 DTIQIEDLNIDSGEVLVVNCLYRFRNLLDETVVVDCPRNIVLNLIRKMNPDVFVL 613 (749)
Q Consensus 559 E~l~~edL~i~~dE~LaVN~~~~Lh~L~desv~~~spRd~vL~~IR~L~P~Vfv~ 613 (749)
+++... +. +.+=+|.+...++|+.+ +...+-+.++.|+|...++
T Consensus 64 ~~l~~~-~~---~~~D~I~~~~~l~~~~~-------~~~~l~~~~~~lk~~G~~i 107 (152)
T PF13847_consen 64 EDLPQE-LE---EKFDIIISNGVLHHFPD-------PEKVLKNIIRLLKPGGILI 107 (152)
T ss_dssp TCGCGC-SS---TTEEEEEEESTGGGTSH-------HHHHHHHHHHHEEEEEEEE
T ss_pred hccccc-cC---CCeeEEEEcCchhhccC-------HHHHHHHHHHHcCCCcEEE
Confidence 443322 22 32333444444466643 3344445578899986543
No 12
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
Probab=90.32 E-value=20 Score=38.16 Aligned_cols=138 Identities=18% Similarity=0.229 Sum_probs=84.1
Q ss_pred HHhhhCCccchhh-HhHhHHHHHhhhcCCeeEEEEeccccccchHHHHHHHhcCCCCCCeEEEeeecCCCCCCCChHHHH
Q 004490 454 LFLAACPFRKLSN-FFSNKTIMNLAEKATRLHIIDFGIMYGFQWPCLIQRLSSRPGGAPKLRITGIDLPQPGFKPAERVE 532 (749)
Q Consensus 454 ~f~~~~Pf~kfa~-ftANqaILeA~~g~~~VHIIDfgI~~G~QWP~Liq~LA~R~gGPP~LRITgI~~p~~gfrpae~le 532 (749)
.|-....++.|+. .+=+++..+.+.-.+--+|+|.+.|-| .|.-+ |+++-| .-+|||||.. ...|+
T Consensus 23 ~YD~~n~~~S~g~~~~Wr~~~i~~~~~~~g~~vLDva~GTG-d~a~~---~~k~~g---~g~v~~~D~s------~~ML~ 89 (238)
T COG2226 23 KYDLMNDLMSFGLHRLWRRALISLLGIKPGDKVLDVACGTG-DMALL---LAKSVG---TGEVVGLDIS------ESMLE 89 (238)
T ss_pred HHHhhcccccCcchHHHHHHHHHhhCCCCCCEEEEecCCcc-HHHHH---HHHhcC---CceEEEEECC------HHHHH
Confidence 3334456666654 445555555554346899999999988 34433 444433 6899999963 45555
Q ss_pred HHHHHHHHHHHhCCCc-EEEEEcccCccccCcccccccCCceEEEEeccccccccccccccCCcHHHHHHHH-HhcCCCE
Q 004490 533 ETGRRLAKYAETFKVP-FEFNAIAQKWDTIQIEDLNIDSGEVLVVNCLYRFRNLLDETVVVDCPRNIVLNLI-RKMNPDV 610 (749)
Q Consensus 533 eTGrRL~~~A~~~gVp-FeF~~Ia~~~E~l~~edL~i~~dE~LaVN~~~~Lh~L~desv~~~spRd~vL~~I-R~L~P~V 610 (749)
...+|+.+ .|+- ++|. ...- +.|....+-+=+|.|.|.|||+.| .+.+|+-+ |=|+|..
T Consensus 90 ~a~~k~~~----~~~~~i~fv--~~dA-----e~LPf~D~sFD~vt~~fglrnv~d--------~~~aL~E~~RVlKpgG 150 (238)
T COG2226 90 VAREKLKK----KGVQNVEFV--VGDA-----ENLPFPDNSFDAVTISFGLRNVTD--------IDKALKEMYRVLKPGG 150 (238)
T ss_pred HHHHHhhc----cCccceEEE--Eech-----hhCCCCCCccCEEEeeehhhcCCC--------HHHHHHHHHHhhcCCe
Confidence 55555543 2222 4442 2233 344455566678999999999975 45677655 6799998
Q ss_pred EEEEEecCCCCcC
Q 004490 611 FVLGIVNGAHSAP 623 (749)
Q Consensus 611 fv~~e~ng~~nsp 623 (749)
.+++..=.....+
T Consensus 151 ~~~vle~~~p~~~ 163 (238)
T COG2226 151 RLLVLEFSKPDNP 163 (238)
T ss_pred EEEEEEcCCCCch
Confidence 6655444444444
No 13
>PRK08317 hypothetical protein; Provisional
Probab=89.13 E-value=25 Score=35.17 Aligned_cols=111 Identities=21% Similarity=0.230 Sum_probs=56.2
Q ss_pred HHHhhhcCCeeEEEEeccccccchHHHHHHHhcCCCCCCeEEEeeecCCCCCCCChHHHHHHHHHHHHHHHhCCCcEEEE
Q 004490 473 IMNLAEKATRLHIIDFGIMYGFQWPCLIQRLSSRPGGAPKLRITGIDLPQPGFKPAERVEETGRRLAKYAETFKVPFEFN 552 (749)
Q Consensus 473 ILeA~~g~~~VHIIDfgI~~G~QWP~Liq~LA~R~gGPP~LRITgI~~p~~gfrpae~leeTGrRL~~~A~~~gVpFeF~ 552 (749)
+++.+.-...-+|+|+|.+.|. |.. .++.+- +|.-++|||+.. ...++.+.++. ...+...+|.
T Consensus 11 ~~~~~~~~~~~~vLdiG~G~G~-~~~---~~a~~~--~~~~~v~~~d~~------~~~~~~a~~~~----~~~~~~~~~~ 74 (241)
T PRK08317 11 TFELLAVQPGDRVLDVGCGPGN-DAR---ELARRV--GPEGRVVGIDRS------EAMLALAKERA----AGLGPNVEFV 74 (241)
T ss_pred HHHHcCCCCCCEEEEeCCCCCH-HHH---HHHHhc--CCCcEEEEEeCC------HHHHHHHHHHh----hCCCCceEEE
Confidence 4566655566789999999884 333 333332 245699999963 33344433331 1122233443
Q ss_pred EcccCccccCcccccccCCceEEEEeccccccccccccccCCcHHHHHHHHHhcCCCEEEE
Q 004490 553 AIAQKWDTIQIEDLNIDSGEVLVVNCLYRFRNLLDETVVVDCPRNIVLNLIRKMNPDVFVL 613 (749)
Q Consensus 553 ~Ia~~~E~l~~edL~i~~dE~LaVN~~~~Lh~L~desv~~~spRd~vL~~IR~L~P~Vfv~ 613 (749)
.. ..+.+. ...+.+=+|-+...++|+.+ |...+-+..+.|+|.-.++
T Consensus 75 ~~--d~~~~~-----~~~~~~D~v~~~~~~~~~~~-------~~~~l~~~~~~L~~gG~l~ 121 (241)
T PRK08317 75 RG--DADGLP-----FPDGSFDAVRSDRVLQHLED-------PARALAEIARVLRPGGRVV 121 (241)
T ss_pred ec--ccccCC-----CCCCCceEEEEechhhccCC-------HHHHHHHHHHHhcCCcEEE
Confidence 32 122211 11222223344455666643 3444445557799986443
No 14
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []. Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.
Probab=89.07 E-value=2.3 Score=44.65 Aligned_cols=110 Identities=21% Similarity=0.329 Sum_probs=60.2
Q ss_pred HHHHhhhcCCeeEEEEeccccccchHHHHHHHhcCCCCCCeEEEeeecCCCCCCCChHHHHHHHHHHHHHHHhCCCcEEE
Q 004490 472 TIMNLAEKATRLHIIDFGIMYGFQWPCLIQRLSSRPGGAPKLRITGIDLPQPGFKPAERVEETGRRLAKYAETFKVPFEF 551 (749)
Q Consensus 472 aILeA~~g~~~VHIIDfgI~~G~QWP~Liq~LA~R~gGPP~LRITgI~~p~~gfrpae~leeTGrRL~~~A~~~gVpFeF 551 (749)
.+++.+...+-.+|+|.+.|.|--+.. |+.+-+ |.-+|||+|.. .+-++.+.+++.+.... + .+|
T Consensus 38 ~~~~~~~~~~g~~vLDv~~GtG~~~~~----l~~~~~--~~~~v~~vD~s------~~ML~~a~~k~~~~~~~-~--i~~ 102 (233)
T PF01209_consen 38 KLIKLLGLRPGDRVLDVACGTGDVTRE----LARRVG--PNGKVVGVDIS------PGMLEVARKKLKREGLQ-N--IEF 102 (233)
T ss_dssp HHHHHHT--S--EEEEET-TTSHHHHH----HGGGSS-----EEEEEES-------HHHHHHHHHHHHHTT---S--EEE
T ss_pred HHHhccCCCCCCEEEEeCCChHHHHHH----HHHHCC--CccEEEEecCC------HHHHHHHHHHHHhhCCC-C--eeE
Confidence 445556666777999999999954444 444322 34599999963 45566666666654432 3 333
Q ss_pred EEcccCccccCcccccccCCceEEEEeccccccccccccccCCcHHHHHHHHHhcCCCE
Q 004490 552 NAIAQKWDTIQIEDLNIDSGEVLVVNCLYRFRNLLDETVVVDCPRNIVLNLIRKMNPDV 610 (749)
Q Consensus 552 ~~Ia~~~E~l~~edL~i~~dE~LaVN~~~~Lh~L~desv~~~spRd~vL~~IR~L~P~V 610 (749)
.. -+.++|....+.+=+|-|.|.||++.| +...+-...|-|+|.-
T Consensus 103 v~-------~da~~lp~~d~sfD~v~~~fglrn~~d-------~~~~l~E~~RVLkPGG 147 (233)
T PF01209_consen 103 VQ-------GDAEDLPFPDNSFDAVTCSFGLRNFPD-------RERALREMYRVLKPGG 147 (233)
T ss_dssp EE--------BTTB--S-TT-EEEEEEES-GGG-SS-------HHHHHHHHHHHEEEEE
T ss_pred EE-------cCHHHhcCCCCceeEEEHHhhHHhhCC-------HHHHHHHHHHHcCCCe
Confidence 22 234456666677889999999999975 2334445567899964
No 15
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=88.64 E-value=29 Score=34.98 Aligned_cols=43 Identities=14% Similarity=0.155 Sum_probs=27.0
Q ss_pred HHHhhhcCCeeEEEEeccccccchHHHHHHHhcCCCCCCeEEEeeecCC
Q 004490 473 IMNLAEKATRLHIIDFGIMYGFQWPCLIQRLSSRPGGAPKLRITGIDLP 521 (749)
Q Consensus 473 ILeA~~g~~~VHIIDfgI~~G~QWP~Liq~LA~R~gGPP~LRITgI~~p 521 (749)
+++.+.-....+|+|+|.+.|. +...|+.+ +|+..++|+++..
T Consensus 43 ~~~~~~~~~~~~vldiG~G~G~----~~~~l~~~--~~~~~~v~~~D~s 85 (239)
T PRK00216 43 TIKWLGVRPGDKVLDLACGTGD----LAIALAKA--VGKTGEVVGLDFS 85 (239)
T ss_pred HHHHhCCCCCCeEEEeCCCCCH----HHHHHHHH--cCCCCeEEEEeCC
Confidence 3444433345789999999984 23333333 2346899999963
No 16
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A.
Probab=88.51 E-value=1.7 Score=38.76 Aligned_cols=97 Identities=25% Similarity=0.398 Sum_probs=51.4
Q ss_pred EEEeccccccchHHHHHHHhcCCCCCCeEEEeeecCCCCCCCChHHHHHHHHHHHHHHHhCCCcEEEEEcccCccccCcc
Q 004490 485 IIDFGIMYGFQWPCLIQRLSSRPGGAPKLRITGIDLPQPGFKPAERVEETGRRLAKYAETFKVPFEFNAIAQKWDTIQIE 564 (749)
Q Consensus 485 IIDfgI~~G~QWP~Liq~LA~R~gGPP~LRITgI~~p~~gfrpae~leeTGrRL~~~A~~~gVpFeF~~Ia~~~E~l~~e 564 (749)
|+|+|.+.|.-=-.|.+.+ .. | |..++||||.. .+.++.+.++..+ .+++.+|.. ..+.+
T Consensus 1 ILDlgcG~G~~~~~l~~~~--~~-~-~~~~~~gvD~s------~~~l~~~~~~~~~----~~~~~~~~~--~D~~~---- 60 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRF--DA-G-PSSRVIGVDIS------PEMLELAKKRFSE----DGPKVRFVQ--ADARD---- 60 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS---------SEEEEEES-------HHHHHHHHHHSHH----TTTTSEEEE--SCTTC----
T ss_pred CEEeecCCcHHHHHHHHHh--hh-c-ccceEEEEECC------HHHHHHHHHhchh----cCCceEEEE--CCHhH----
Confidence 7999999997666666665 22 2 56999999963 4455554444433 455666633 22322
Q ss_pred cccccCCceEEEEe-ccccccccccccccCCcHHHHHHHHHh-cCC
Q 004490 565 DLNIDSGEVLVVNC-LYRFRNLLDETVVVDCPRNIVLNLIRK-MNP 608 (749)
Q Consensus 565 dL~i~~dE~LaVN~-~~~Lh~L~desv~~~spRd~vL~~IR~-L~P 608 (749)
+....+.+=+|-| ..-++|+.++. +..+|+.+.+ ++|
T Consensus 61 -l~~~~~~~D~v~~~~~~~~~~~~~~------~~~ll~~~~~~l~p 99 (101)
T PF13649_consen 61 -LPFSDGKFDLVVCSGLSLHHLSPEE------LEALLRRIARLLRP 99 (101)
T ss_dssp -HHHHSSSEEEEEE-TTGGGGSSHHH------HHHHHHHHHHTEEE
T ss_pred -CcccCCCeeEEEEcCCccCCCCHHH------HHHHHHHHHHHhCC
Confidence 2223334444545 44488875432 4456665543 444
No 17
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase
Probab=88.00 E-value=9.6 Score=42.16 Aligned_cols=101 Identities=21% Similarity=0.254 Sum_probs=55.0
Q ss_pred eeEEEEeccccccchHHHHHHHhcCCCCCCeEEEeeecCCCCCCCChHHHHHHHHHHHHHHHhCCC--cEEEEEcccCcc
Q 004490 482 RLHIIDFGIMYGFQWPCLIQRLSSRPGGAPKLRITGIDLPQPGFKPAERVEETGRRLAKYAETFKV--PFEFNAIAQKWD 559 (749)
Q Consensus 482 ~VHIIDfgI~~G~QWP~Liq~LA~R~gGPP~LRITgI~~p~~gfrpae~leeTGrRL~~~A~~~gV--pFeF~~Ia~~~E 559 (749)
...|+|+|.|.|. +...|+.+ | .++||||.. .+.++...++ ++.-++ ..+|.. ...+
T Consensus 132 g~~ILDIGCG~G~----~s~~La~~-g----~~V~GID~s------~~~i~~Ar~~----~~~~~~~~~i~~~~--~dae 190 (322)
T PLN02396 132 GLKFIDIGCGGGL----LSEPLARM-G----ATVTGVDAV------DKNVKIARLH----ADMDPVTSTIEYLC--TTAE 190 (322)
T ss_pred CCEEEEeeCCCCH----HHHHHHHc-C----CEEEEEeCC------HHHHHHHHHH----HHhcCcccceeEEe--cCHH
Confidence 3579999999996 45567643 3 489999953 3334333322 222121 233433 2223
Q ss_pred ccCcccccccCCceEEEEeccccccccccccccCCcHHHHHHHH-HhcCCCEE-EEEEe
Q 004490 560 TIQIEDLNIDSGEVLVVNCLYRFRNLLDETVVVDCPRNIVLNLI-RKMNPDVF-VLGIV 616 (749)
Q Consensus 560 ~l~~edL~i~~dE~LaVN~~~~Lh~L~desv~~~spRd~vL~~I-R~L~P~Vf-v~~e~ 616 (749)
++. ...+.+=+|-|..-|+|+.| | ..+|+.| +-|+|.-. ++...
T Consensus 191 ~l~-----~~~~~FD~Vi~~~vLeHv~d-------~-~~~L~~l~r~LkPGG~liist~ 236 (322)
T PLN02396 191 KLA-----DEGRKFDAVLSLEVIEHVAN-------P-AEFCKSLSALTIPNGATVLSTI 236 (322)
T ss_pred Hhh-----hccCCCCEEEEhhHHHhcCC-------H-HHHHHHHHHHcCCCcEEEEEEC
Confidence 332 12233445666778889875 2 3566665 56899754 34433
No 18
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=86.03 E-value=22 Score=36.94 Aligned_cols=45 Identities=27% Similarity=0.337 Sum_probs=30.8
Q ss_pred hHHHHHhhhcCCeeEEEEeccccccchHHHHHHHhcCCCCCCeEEEeeecCC
Q 004490 470 NKTIMNLAEKATRLHIIDFGIMYGFQWPCLIQRLSSRPGGAPKLRITGIDLP 521 (749)
Q Consensus 470 NqaILeA~~g~~~VHIIDfgI~~G~QWP~Liq~LA~R~gGPP~LRITgI~~p 521 (749)
+..|++.+.-...-+|+|+|.+.| .+...|+.+. |..+++|||..
T Consensus 20 ~~~ll~~~~~~~~~~vLDiGcG~G----~~~~~la~~~---~~~~v~gvD~s 64 (258)
T PRK01683 20 ARDLLARVPLENPRYVVDLGCGPG----NSTELLVERW---PAARITGIDSS 64 (258)
T ss_pred HHHHHhhCCCcCCCEEEEEcccCC----HHHHHHHHHC---CCCEEEEEECC
Confidence 455666665455678999999999 2344556553 34699999963
No 19
>PLN02585 magnesium protoporphyrin IX methyltransferase
Probab=86.02 E-value=16 Score=40.29 Aligned_cols=103 Identities=18% Similarity=0.259 Sum_probs=58.2
Q ss_pred CeeEEEEeccccccchHHHHHHHhcCCCCCCeEEEeeecCCCCCCCChHHHHHHHHHHHHHHH-hC-CCcEEEEEcccCc
Q 004490 481 TRLHIIDFGIMYGFQWPCLIQRLSSRPGGAPKLRITGIDLPQPGFKPAERVEETGRRLAKYAE-TF-KVPFEFNAIAQKW 558 (749)
Q Consensus 481 ~~VHIIDfgI~~G~QWP~Liq~LA~R~gGPP~LRITgI~~p~~gfrpae~leeTGrRL~~~A~-~~-gVpFeF~~Ia~~~ 558 (749)
+...|+|+|.|.|. +...|+.+ | .+|||||.. ...++...++....-. .. +...+|... .+
T Consensus 144 ~~~~VLDlGcGtG~----~a~~la~~-g----~~V~gvD~S------~~ml~~A~~~~~~~~~~~~~~~~~~f~~~--Dl 206 (315)
T PLN02585 144 AGVTVCDAGCGTGS----LAIPLALE-G----AIVSASDIS------AAMVAEAERRAKEALAALPPEVLPKFEAN--DL 206 (315)
T ss_pred CCCEEEEecCCCCH----HHHHHHHC-C----CEEEEEECC------HHHHHHHHHHHHhcccccccccceEEEEc--ch
Confidence 45689999999995 44556654 2 489999964 4455555555432210 01 233444332 23
Q ss_pred cccCcccccccCCceEEEEeccccccccccccccCCcHHHHHHHHHhcCCCEEEEE
Q 004490 559 DTIQIEDLNIDSGEVLVVNCLYRFRNLLDETVVVDCPRNIVLNLIRKMNPDVFVLG 614 (749)
Q Consensus 559 E~l~~edL~i~~dE~LaVN~~~~Lh~L~desv~~~spRd~vL~~IR~L~P~Vfv~~ 614 (749)
+++ . +..=+|-|...|+|+.++ ....+++.++++.|..+++.
T Consensus 207 ~~l-----~---~~fD~Vv~~~vL~H~p~~------~~~~ll~~l~~l~~g~liIs 248 (315)
T PLN02585 207 ESL-----S---GKYDTVTCLDVLIHYPQD------KADGMIAHLASLAEKRLIIS 248 (315)
T ss_pred hhc-----C---CCcCEEEEcCEEEecCHH------HHHHHHHHHHhhcCCEEEEE
Confidence 322 1 111133366667787653 23467788888888877663
No 20
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=85.58 E-value=29 Score=36.95 Aligned_cols=48 Identities=17% Similarity=0.283 Sum_probs=32.4
Q ss_pred hHhHhHHHHHhhhcCCeeEEEEeccccccchHHHHHHHhcCCCCCCeEEEeeecCC
Q 004490 466 NFFSNKTIMNLAEKATRLHIIDFGIMYGFQWPCLIQRLSSRPGGAPKLRITGIDLP 521 (749)
Q Consensus 466 ~ftANqaILeA~~g~~~VHIIDfgI~~G~QWP~Liq~LA~R~gGPP~LRITgI~~p 521 (749)
-+-+.+.|++.+.-...-+|+|+|.+.|.-. ..|+.+.+ .++|||+..
T Consensus 37 g~~~~~~~l~~l~l~~~~~VLDiGcG~G~~a----~~la~~~~----~~v~giD~s 84 (263)
T PTZ00098 37 GIEATTKILSDIELNENSKVLDIGSGLGGGC----KYINEKYG----AHVHGVDIC 84 (263)
T ss_pred chHHHHHHHHhCCCCCCCEEEEEcCCCChhh----HHHHhhcC----CEEEEEECC
Confidence 3445566777775566678999999999732 34444332 489999963
No 21
>TIGR00477 tehB tellurite resistance protein TehB. Part of a tellurite-reducing operon tehA and tehB
Probab=84.64 E-value=8.9 Score=38.75 Aligned_cols=111 Identities=13% Similarity=0.167 Sum_probs=61.3
Q ss_pred hHhHHHHHhhhcCCeeEEEEeccccccchHHHHHHHhcCCCCCCeEEEeeecCCCCCCCChHHHHHHHHHHHHHHHhCCC
Q 004490 468 FSNKTIMNLAEKATRLHIIDFGIMYGFQWPCLIQRLSSRPGGAPKLRITGIDLPQPGFKPAERVEETGRRLAKYAETFKV 547 (749)
Q Consensus 468 tANqaILeA~~g~~~VHIIDfgI~~G~QWP~Liq~LA~R~gGPP~LRITgI~~p~~gfrpae~leeTGrRL~~~A~~~gV 547 (749)
.+...|++++.-...-+|+|+|.|.|.--. .||.+ | .++||||.. ...++.+ .+.++..|+
T Consensus 17 ~~~~~l~~~~~~~~~~~vLDiGcG~G~~a~----~la~~-g----~~V~~iD~s------~~~l~~a----~~~~~~~~~ 77 (195)
T TIGR00477 17 TTHSAVREAVKTVAPCKTLDLGCGQGRNSL----YLSLA-G----YDVRAWDHN------PASIASV----LDMKARENL 77 (195)
T ss_pred CchHHHHHHhccCCCCcEEEeCCCCCHHHH----HHHHC-C----CeEEEEECC------HHHHHHH----HHHHHHhCC
Confidence 456677888765556799999999996333 34444 3 489999963 2333333 334455577
Q ss_pred cEEEEEcccCccccCcccccccCCceEEEEeccccccccccccccCCcHHHHHHHH-HhcCCCEE
Q 004490 548 PFEFNAIAQKWDTIQIEDLNIDSGEVLVVNCLYRFRNLLDETVVVDCPRNIVLNLI-RKMNPDVF 611 (749)
Q Consensus 548 pFeF~~Ia~~~E~l~~edL~i~~dE~LaVN~~~~Lh~L~desv~~~spRd~vL~~I-R~L~P~Vf 611 (749)
+..+... .++... +. ..=++++.+ .-|||+..+ .+..+++.+ |.|+|.-.
T Consensus 78 ~v~~~~~--d~~~~~---~~-~~fD~I~~~--~~~~~~~~~------~~~~~l~~~~~~LkpgG~ 128 (195)
T TIGR00477 78 PLRTDAY--DINAAA---LN-EDYDFIFST--VVFMFLQAG------RVPEIIANMQAHTRPGGY 128 (195)
T ss_pred CceeEec--cchhcc---cc-CCCCEEEEe--cccccCCHH------HHHHHHHHHHHHhCCCcE
Confidence 6544332 122111 11 111344333 345666432 245666665 67899854
No 22
>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation
Probab=84.06 E-value=6.8 Score=42.10 Aligned_cols=140 Identities=18% Similarity=0.238 Sum_probs=74.7
Q ss_pred hhhHhHhHHHHHhhhc----CCeeEEEEeccccccchHHHHHHHhcCCCCCCeEEEeeecCCCCCCCChHHHHHHHHHHH
Q 004490 464 LSNFFSNKTIMNLAEK----ATRLHIIDFGIMYGFQWPCLIQRLSSRPGGAPKLRITGIDLPQPGFKPAERVEETGRRLA 539 (749)
Q Consensus 464 fa~ftANqaILeA~~g----~~~VHIIDfgI~~G~QWP~Liq~LA~R~gGPP~LRITgI~~p~~gfrpae~leeTGrRL~ 539 (749)
-+++.+-..||+.+.. -.--+|+|||-|-|. .+.-+...- +-..++|.||. ...+.+.|++|.
T Consensus 12 p~~YA~~~~vl~El~~r~p~f~P~~vLD~GsGpGt---a~wAa~~~~---~~~~~~~~vd~-------s~~~~~l~~~l~ 78 (274)
T PF09243_consen 12 PATYAAVYRVLSELRKRLPDFRPRSVLDFGSGPGT---ALWAAREVW---PSLKEYTCVDR-------SPEMLELAKRLL 78 (274)
T ss_pred hHHHHHHHHHHHHHHHhCcCCCCceEEEecCChHH---HHHHHHHHh---cCceeeeeecC-------CHHHHHHHHHHH
Confidence 3566777777777753 355699999999884 222111111 13468999984 344667888876
Q ss_pred HHHHhCCCcEEEEEcccCccccCcccccccCCceEEEEeccccccccccccccCCcHHHHHHHH-HhcCCCEEEEEEecC
Q 004490 540 KYAETFKVPFEFNAIAQKWDTIQIEDLNIDSGEVLVVNCLYRFRNLLDETVVVDCPRNIVLNLI-RKMNPDVFVLGIVNG 618 (749)
Q Consensus 540 ~~A~~~gVpFeF~~Ia~~~E~l~~edL~i~~dE~LaVN~~~~Lh~L~desv~~~spRd~vL~~I-R~L~P~Vfv~~e~ng 618 (749)
+-....... +.. ..+..+.+.+.+.+.|+ +.|.|..|.+ ..|..++..+ +++++ ++|+ +..|
T Consensus 79 ~~~~~~~~~-~~~------~~~~~~~~~~~~~DLvi--~s~~L~EL~~------~~r~~lv~~LW~~~~~-~LVl-VEpG 141 (274)
T PF09243_consen 79 RAGPNNRNA-EWR------RVLYRDFLPFPPDDLVI--ASYVLNELPS------AARAELVRSLWNKTAP-VLVL-VEPG 141 (274)
T ss_pred hcccccccc-hhh------hhhhcccccCCCCcEEE--EehhhhcCCc------hHHHHHHHHHHHhccC-cEEE-EcCC
Confidence 543221100 000 11112223333333333 2334444433 2466777766 66777 4444 3456
Q ss_pred CCCcCchHHHHHHHH
Q 004490 619 AHSAPFFITRFREAL 633 (749)
Q Consensus 619 ~~nsp~F~~RF~EAL 633 (749)
+...-..+.+.|+.|
T Consensus 142 t~~Gf~~i~~aR~~l 156 (274)
T PF09243_consen 142 TPAGFRRIAEARDQL 156 (274)
T ss_pred ChHHHHHHHHHHHHH
Confidence 655555677777777
No 23
>PRK05785 hypothetical protein; Provisional
Probab=82.76 E-value=57 Score=33.95 Aligned_cols=92 Identities=10% Similarity=0.040 Sum_probs=51.4
Q ss_pred eeEEEEeccccccchHHHHHHHhcCCCCCCeEEEeeecCCCCCCCChHHHHHHHHHHHHHHHhCCCcEEEEEcccCcccc
Q 004490 482 RLHIIDFGIMYGFQWPCLIQRLSSRPGGAPKLRITGIDLPQPGFKPAERVEETGRRLAKYAETFKVPFEFNAIAQKWDTI 561 (749)
Q Consensus 482 ~VHIIDfgI~~G~QWP~Liq~LA~R~gGPP~LRITgI~~p~~gfrpae~leeTGrRL~~~A~~~gVpFeF~~Ia~~~E~l 561 (749)
.-.|+|+|.|.|.- ...|+.+.+ .+|||||.. .+.++....+ .++ +....++
T Consensus 52 ~~~VLDlGcGtG~~----~~~l~~~~~----~~v~gvD~S------~~Ml~~a~~~---------~~~----~~~d~~~- 103 (226)
T PRK05785 52 PKKVLDVAAGKGEL----SYHFKKVFK----YYVVALDYA------ENMLKMNLVA---------DDK----VVGSFEA- 103 (226)
T ss_pred CCeEEEEcCCCCHH----HHHHHHhcC----CEEEEECCC------HHHHHHHHhc---------cce----EEechhh-
Confidence 45899999999943 334454432 489999963 2333332211 111 2222233
Q ss_pred CcccccccCCceEEEEeccccccccccccccCCcHHHHHHHH-HhcCCCEEEE
Q 004490 562 QIEDLNIDSGEVLVVNCLYRFRNLLDETVVVDCPRNIVLNLI-RKMNPDVFVL 613 (749)
Q Consensus 562 ~~edL~i~~dE~LaVN~~~~Lh~L~desv~~~spRd~vL~~I-R~L~P~Vfv~ 613 (749)
+....+.+=+|-|.+.|||+.| .+.+|+.+ |-++|.++++
T Consensus 104 ----lp~~d~sfD~v~~~~~l~~~~d--------~~~~l~e~~RvLkp~~~il 144 (226)
T PRK05785 104 ----LPFRDKSFDVVMSSFALHASDN--------IEKVIAEFTRVSRKQVGFI 144 (226)
T ss_pred ----CCCCCCCEEEEEecChhhccCC--------HHHHHHHHHHHhcCceEEE
Confidence 3333454556667778888754 24566655 6789965444
No 24
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=81.70 E-value=14 Score=39.70 Aligned_cols=95 Identities=16% Similarity=0.237 Sum_probs=52.5
Q ss_pred EEEEeccccccchHHHHHHHhcCCCCCCeEEEeeecCCCCCCCChHHHHHHHHHHHHHHHhCCCcEEEEEcccCccccCc
Q 004490 484 HIIDFGIMYGFQWPCLIQRLSSRPGGAPKLRITGIDLPQPGFKPAERVEETGRRLAKYAETFKVPFEFNAIAQKWDTIQI 563 (749)
Q Consensus 484 HIIDfgI~~G~QWP~Liq~LA~R~gGPP~LRITgI~~p~~gfrpae~leeTGrRL~~~A~~~gVpFeF~~Ia~~~E~l~~ 563 (749)
+|+|+|.|.|. +...||.+ | .++||||.. ...++ .+.+.|+..++.+++... .++...
T Consensus 123 ~vLDlGcG~G~----~~~~la~~-g----~~V~avD~s------~~ai~----~~~~~~~~~~l~v~~~~~--D~~~~~- 180 (287)
T PRK12335 123 KALDLGCGQGR----NSLYLALL-G----FDVTAVDIN------QQSLE----NLQEIAEKENLNIRTGLY--DINSAS- 180 (287)
T ss_pred CEEEeCCCCCH----HHHHHHHC-C----CEEEEEECC------HHHHH----HHHHHHHHcCCceEEEEe--chhccc-
Confidence 89999999996 34455654 2 589999963 23333 344556666776655432 222111
Q ss_pred ccccccCCceEEEEeccccccccccccccCCcHHHHHHHH-HhcCCCEE
Q 004490 564 EDLNIDSGEVLVVNCLYRFRNLLDETVVVDCPRNIVLNLI-RKMNPDVF 611 (749)
Q Consensus 564 edL~i~~dE~LaVN~~~~Lh~L~desv~~~spRd~vL~~I-R~L~P~Vf 611 (749)
+. ..=++++.+ .-||++.++ .+..+|+.+ +.++|.-.
T Consensus 181 --~~-~~fD~I~~~--~vl~~l~~~------~~~~~l~~~~~~LkpgG~ 218 (287)
T PRK12335 181 --IQ-EEYDFILST--VVLMFLNRE------RIPAIIKNMQEHTNPGGY 218 (287)
T ss_pred --cc-CCccEEEEc--chhhhCCHH------HHHHHHHHHHHhcCCCcE
Confidence 10 111344434 345666432 234566655 67899754
No 25
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=81.54 E-value=3.9 Score=36.45 Aligned_cols=103 Identities=22% Similarity=0.287 Sum_probs=54.9
Q ss_pred EEEEeccccccchHHHHHHHhcCCCCCCeEEEeeecCCCCCCCChHHHHHHHHHHHHHHHhCCCcEEEEEcccCccccCc
Q 004490 484 HIIDFGIMYGFQWPCLIQRLSSRPGGAPKLRITGIDLPQPGFKPAERVEETGRRLAKYAETFKVPFEFNAIAQKWDTIQI 563 (749)
Q Consensus 484 HIIDfgI~~G~QWP~Liq~LA~R~gGPP~LRITgI~~p~~gfrpae~leeTGrRL~~~A~~~gVpFeF~~Ia~~~E~l~~ 563 (749)
+|+|+|.+.|. +...|+++. |..||||||.. .+.++.+.+++.+....-+ .+|.. ..+ .
T Consensus 4 ~vLDlGcG~G~----~~~~l~~~~---~~~~v~gvD~s------~~~~~~a~~~~~~~~~~~~--i~~~~--~d~----~ 62 (112)
T PF12847_consen 4 RVLDLGCGTGR----LSIALARLF---PGARVVGVDIS------PEMLEIARERAAEEGLSDR--ITFVQ--GDA----E 62 (112)
T ss_dssp EEEEETTTTSH----HHHHHHHHH---TTSEEEEEESS------HHHHHHHHHHHHHTTTTTT--EEEEE--SCC----H
T ss_pred EEEEEcCcCCH----HHHHHHhcC---CCCEEEEEeCC------HHHHHHHHHHHHhcCCCCC--eEEEE--Ccc----c
Confidence 68999999993 333444421 34689999963 4566767666644333333 33333 122 0
Q ss_pred ccccc-cCCceEEEEeccccccccccccccCCcHHHHHHHH-HhcCCCEEEE
Q 004490 564 EDLNI-DSGEVLVVNCLYRFRNLLDETVVVDCPRNIVLNLI-RKMNPDVFVL 613 (749)
Q Consensus 564 edL~i-~~dE~LaVN~~~~Lh~L~desv~~~spRd~vL~~I-R~L~P~Vfv~ 613 (749)
..... .+=++++.+. +.++++.+. ..+..+|+.+ +.|+|.-.++
T Consensus 63 ~~~~~~~~~D~v~~~~-~~~~~~~~~-----~~~~~~l~~~~~~L~pgG~lv 108 (112)
T PF12847_consen 63 FDPDFLEPFDLVICSG-FTLHFLLPL-----DERRRVLERIRRLLKPGGRLV 108 (112)
T ss_dssp GGTTTSSCEEEEEECS-GSGGGCCHH-----HHHHHHHHHHHHHEEEEEEEE
T ss_pred cCcccCCCCCEEEECC-Cccccccch-----hHHHHHHHHHHHhcCCCcEEE
Confidence 11111 1123444444 456666542 1245667655 5789976544
No 26
>smart00138 MeTrc Methyltransferase, chemotaxis proteins. Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.
Probab=81.32 E-value=2.3 Score=45.32 Aligned_cols=42 Identities=21% Similarity=0.229 Sum_probs=30.5
Q ss_pred CCeeEEEEeccccccchHHHHHHHhcCCC--CCCeEEEeeecCC
Q 004490 480 ATRLHIIDFGIMYGFQWPCLIQRLSSRPG--GAPKLRITGIDLP 521 (749)
Q Consensus 480 ~~~VHIIDfgI~~G~QWP~Liq~LA~R~g--GPP~LRITgI~~p 521 (749)
.+.++|.|.|.+.|--+-+|--.|+..-. ..+..+|+|+|..
T Consensus 98 ~~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis 141 (264)
T smart00138 98 GRRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDID 141 (264)
T ss_pred CCCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECC
Confidence 45799999999999876666555554321 2347899999974
No 27
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=81.20 E-value=40 Score=38.58 Aligned_cols=111 Identities=15% Similarity=0.151 Sum_probs=60.5
Q ss_pred HHHHHhhhcCCeeEEEEeccccccchHHHHHHHhcCCCCCCeEEEeeecCCCCCCCChHHHHHHHHHHHHHHHhCCCcEE
Q 004490 471 KTIMNLAEKATRLHIIDFGIMYGFQWPCLIQRLSSRPGGAPKLRITGIDLPQPGFKPAERVEETGRRLAKYAETFKVPFE 550 (749)
Q Consensus 471 qaILeA~~g~~~VHIIDfgI~~G~QWP~Liq~LA~R~gGPP~LRITgI~~p~~gfrpae~leeTGrRL~~~A~~~gVpFe 550 (749)
..+++.+.-...-+|+|+|.|.|. +...|+.+.+ .++|||++. .+.++.+.++. ...+...+
T Consensus 256 e~l~~~~~~~~~~~vLDiGcG~G~----~~~~la~~~~----~~v~gvDiS------~~~l~~A~~~~----~~~~~~v~ 317 (475)
T PLN02336 256 KEFVDKLDLKPGQKVLDVGCGIGG----GDFYMAENFD----VHVVGIDLS------VNMISFALERA----IGRKCSVE 317 (475)
T ss_pred HHHHHhcCCCCCCEEEEEeccCCH----HHHHHHHhcC----CEEEEEECC------HHHHHHHHHHh----hcCCCceE
Confidence 334444432344589999999994 4455676543 489999964 34444443332 23333455
Q ss_pred EEEcccCccccCcccccccCCceEEEEeccccccccccccccCCcHHHHHHHHHhcCCCEEEE
Q 004490 551 FNAIAQKWDTIQIEDLNIDSGEVLVVNCLYRFRNLLDETVVVDCPRNIVLNLIRKMNPDVFVL 613 (749)
Q Consensus 551 F~~Ia~~~E~l~~edL~i~~dE~LaVN~~~~Lh~L~desv~~~spRd~vL~~IR~L~P~Vfv~ 613 (749)
|... .+.++ .+..+.+=+|-|...++|+.| |...+-...|.|+|.-.++
T Consensus 318 ~~~~--d~~~~-----~~~~~~fD~I~s~~~l~h~~d-------~~~~l~~~~r~LkpgG~l~ 366 (475)
T PLN02336 318 FEVA--DCTKK-----TYPDNSFDVIYSRDTILHIQD-------KPALFRSFFKWLKPGGKVL 366 (475)
T ss_pred EEEc--CcccC-----CCCCCCEEEEEECCcccccCC-------HHHHHHHHHHHcCCCeEEE
Confidence 5432 22221 122233445556667788753 3344444557899986543
No 28
>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....
Probab=80.92 E-value=6.6 Score=33.25 Aligned_cols=92 Identities=25% Similarity=0.268 Sum_probs=52.3
Q ss_pred EEeccccccchHHHHHHHhcCCCCCCeEEEeeecCCCCCCCChHHHHHHHHHHHHHHHhCCCcEEEEEcccCccccCccc
Q 004490 486 IDFGIMYGFQWPCLIQRLSSRPGGAPKLRITGIDLPQPGFKPAERVEETGRRLAKYAETFKVPFEFNAIAQKWDTIQIED 565 (749)
Q Consensus 486 IDfgI~~G~QWP~Liq~LA~R~gGPP~LRITgI~~p~~gfrpae~leeTGrRL~~~A~~~gVpFeF~~Ia~~~E~l~~ed 565 (749)
+|+|.+.|.....|.+. +-.++||||.. .+.++.+ .+..+..++. | ...+.++
T Consensus 1 LdiG~G~G~~~~~l~~~--------~~~~v~~~D~~------~~~~~~~----~~~~~~~~~~--~-------~~~d~~~ 53 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKR--------GGASVTGIDIS------EEMLEQA----RKRLKNEGVS--F-------RQGDAED 53 (95)
T ss_dssp EEET-TTSHHHHHHHHT--------TTCEEEEEES-------HHHHHHH----HHHTTTSTEE--E-------EESBTTS
T ss_pred CEecCcCCHHHHHHHhc--------cCCEEEEEeCC------HHHHHHH----HhcccccCch--h-------eeehHHh
Confidence 58899999776666654 34799999953 2333333 3333334444 1 1223445
Q ss_pred ccccCCceEEEEeccccccccccccccCCcHHHHHH-HHHhcCCCEEE
Q 004490 566 LNIDSGEVLVVNCLYRFRNLLDETVVVDCPRNIVLN-LIRKMNPDVFV 612 (749)
Q Consensus 566 L~i~~dE~LaVN~~~~Lh~L~desv~~~spRd~vL~-~IR~L~P~Vfv 612 (749)
+.+..+-+=+|-|...+||+. .+..+|+ ..|-|+|.-+.
T Consensus 54 l~~~~~sfD~v~~~~~~~~~~--------~~~~~l~e~~rvLk~gG~l 93 (95)
T PF08241_consen 54 LPFPDNSFDVVFSNSVLHHLE--------DPEAALREIYRVLKPGGRL 93 (95)
T ss_dssp SSS-TT-EEEEEEESHGGGSS--------HHHHHHHHHHHHEEEEEEE
T ss_pred Cccccccccccccccceeecc--------CHHHHHHHHHHHcCcCeEE
Confidence 555566676788888888882 1344554 45778887543
No 29
>TIGR03438 probable methyltransferase. This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases
Probab=80.18 E-value=19 Score=39.03 Aligned_cols=110 Identities=17% Similarity=0.204 Sum_probs=65.6
Q ss_pred eeEEEEeccccccchHHHHHHHhcCCCCCCeEEEeeecCCCCCCCChHHHHHHHHHHHHHHHhCCCcEEEEEcccCccc-
Q 004490 482 RLHIIDFGIMYGFQWPCLIQRLSSRPGGAPKLRITGIDLPQPGFKPAERVEETGRRLAKYAETFKVPFEFNAIAQKWDT- 560 (749)
Q Consensus 482 ~VHIIDfgI~~G~QWP~Liq~LA~R~gGPP~LRITgI~~p~~gfrpae~leeTGrRL~~~A~~~gVpFeF~~Ia~~~E~- 560 (749)
..+|||+|.|.|.-=..|+++|.. ..++||||+. .+.|+.+.++|..- .-++++++ |.....+
T Consensus 64 ~~~iLELGcGtG~~t~~Ll~~l~~------~~~~~~iDiS------~~mL~~a~~~l~~~--~p~~~v~~--i~gD~~~~ 127 (301)
T TIGR03438 64 GCELVELGSGSSRKTRLLLDALRQ------PARYVPIDIS------ADALKESAAALAAD--YPQLEVHG--ICADFTQP 127 (301)
T ss_pred CCeEEecCCCcchhHHHHHHhhcc------CCeEEEEECC------HHHHHHHHHHHHhh--CCCceEEE--EEEcccch
Confidence 357999999999766667777642 3789999974 56678888877641 12344443 3332221
Q ss_pred cCcccccccCCceEEEEeccccccccccccccCCcHHHHHHHH-HhcCCC-EEEEE
Q 004490 561 IQIEDLNIDSGEVLVVNCLYRFRNLLDETVVVDCPRNIVLNLI-RKMNPD-VFVLG 614 (749)
Q Consensus 561 l~~edL~i~~dE~LaVN~~~~Lh~L~desv~~~spRd~vL~~I-R~L~P~-Vfv~~ 614 (749)
+..-. ....+..+++.+-..++|+..+. ...+|+.| +.|+|. +|+++
T Consensus 128 ~~~~~-~~~~~~~~~~~~gs~~~~~~~~e------~~~~L~~i~~~L~pgG~~lig 176 (301)
T TIGR03438 128 LALPP-EPAAGRRLGFFPGSTIGNFTPEE------AVAFLRRIRQLLGPGGGLLIG 176 (301)
T ss_pred hhhhc-ccccCCeEEEEecccccCCCHHH------HHHHHHHHHHhcCCCCEEEEe
Confidence 11000 01112466776666777775432 34677777 468996 55553
No 30
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=78.38 E-value=36 Score=35.64 Aligned_cols=111 Identities=17% Similarity=0.141 Sum_probs=60.0
Q ss_pred HHHHhhhcCCeeEEEEeccccccchHHHHHHHhcCCCCCCeEEEeeecCCCCCCCChHHHHHHHHHHHHHHHhCCCcEEE
Q 004490 472 TIMNLAEKATRLHIIDFGIMYGFQWPCLIQRLSSRPGGAPKLRITGIDLPQPGFKPAERVEETGRRLAKYAETFKVPFEF 551 (749)
Q Consensus 472 aILeA~~g~~~VHIIDfgI~~G~QWP~Liq~LA~R~gGPP~LRITgI~~p~~gfrpae~leeTGrRL~~~A~~~gVpFeF 551 (749)
.|++.+. .+.-+|+|+|.+.|. +...|+.+ | .++||||.. .+.++.+.+++ +..|+.-..
T Consensus 36 ~~l~~l~-~~~~~vLDiGcG~G~----~a~~la~~-g----~~v~~vD~s------~~~l~~a~~~~----~~~g~~~~v 95 (255)
T PRK11036 36 RLLAELP-PRPLRVLDAGGGEGQ----TAIKLAEL-G----HQVILCDLS------AEMIQRAKQAA----EAKGVSDNM 95 (255)
T ss_pred HHHHhcC-CCCCEEEEeCCCchH----HHHHHHHc-C----CEEEEEECC------HHHHHHHHHHH----HhcCCccce
Confidence 4566654 345699999999993 45566665 2 489999953 34455444443 344543222
Q ss_pred EEcccCccccCcccccccCCceEEEEeccccccccccccccCCcHHHHHHHHHhcCCCEEEE
Q 004490 552 NAIAQKWDTIQIEDLNIDSGEVLVVNCLYRFRNLLDETVVVDCPRNIVLNLIRKMNPDVFVL 613 (749)
Q Consensus 552 ~~Ia~~~E~l~~edL~i~~dE~LaVN~~~~Lh~L~desv~~~spRd~vL~~IR~L~P~Vfv~ 613 (749)
..+....+++.. ..++.+=+|-|...|+|+.+ |...+-...+-|+|.-.+.
T Consensus 96 ~~~~~d~~~l~~----~~~~~fD~V~~~~vl~~~~~-------~~~~l~~~~~~LkpgG~l~ 146 (255)
T PRK11036 96 QFIHCAAQDIAQ----HLETPVDLILFHAVLEWVAD-------PKSVLQTLWSVLRPGGALS 146 (255)
T ss_pred EEEEcCHHHHhh----hcCCCCCEEEehhHHHhhCC-------HHHHHHHHHHHcCCCeEEE
Confidence 222223333221 11122223335566777743 4444555567899986543
No 31
>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional
Probab=78.13 E-value=68 Score=32.76 Aligned_cols=101 Identities=20% Similarity=0.339 Sum_probs=51.0
Q ss_pred cCCeeEEEEeccccccchHHHHHHHhcCCCCCCeEEEeeecCCCCCCCChHHHHHHHHHHHHHHHhCCCcEEEEEcccCc
Q 004490 479 KATRLHIIDFGIMYGFQWPCLIQRLSSRPGGAPKLRITGIDLPQPGFKPAERVEETGRRLAKYAETFKVPFEFNAIAQKW 558 (749)
Q Consensus 479 g~~~VHIIDfgI~~G~QWP~Liq~LA~R~gGPP~LRITgI~~p~~gfrpae~leeTGrRL~~~A~~~gVpFeF~~Ia~~~ 558 (749)
.....+|+|+|.+.|. +...|+.+ + .++|+|+.. ...++.+.+++. ..++..+|... .+
T Consensus 46 ~~~~~~vLdiG~G~G~----~~~~l~~~-~----~~v~~iD~s------~~~~~~a~~~~~----~~~~~~~~~~~--~~ 104 (233)
T PRK05134 46 GLFGKRVLDVGCGGGI----LSESMARL-G----ADVTGIDAS------EENIEVARLHAL----ESGLKIDYRQT--TA 104 (233)
T ss_pred CCCCCeEEEeCCCCCH----HHHHHHHc-C----CeEEEEcCC------HHHHHHHHHHHH----HcCCceEEEec--CH
Confidence 3456789999999885 33344443 2 469999863 334444444432 23444555432 22
Q ss_pred cccCcccccccCCceEEEEeccccccccccccccCCcHHHHHHH-HHhcCCCEEE
Q 004490 559 DTIQIEDLNIDSGEVLVVNCLYRFRNLLDETVVVDCPRNIVLNL-IRKMNPDVFV 612 (749)
Q Consensus 559 E~l~~edL~i~~dE~LaVN~~~~Lh~L~desv~~~spRd~vL~~-IR~L~P~Vfv 612 (749)
+.+... ..+-+=+|-|..-++|+.+ +. .+|+. .+-|+|.-.+
T Consensus 105 ~~~~~~----~~~~fD~Ii~~~~l~~~~~-------~~-~~l~~~~~~L~~gG~l 147 (233)
T PRK05134 105 EELAAE----HPGQFDVVTCMEMLEHVPD-------PA-SFVRACAKLVKPGGLV 147 (233)
T ss_pred HHhhhh----cCCCccEEEEhhHhhccCC-------HH-HHHHHHHHHcCCCcEE
Confidence 222100 1121223334445566542 33 45554 4668897433
No 32
>PLN02244 tocopherol O-methyltransferase
Probab=77.26 E-value=27 Score=38.58 Aligned_cols=97 Identities=18% Similarity=0.196 Sum_probs=54.8
Q ss_pred CeeEEEEeccccccchHHHHHHHhcCCCCCCeEEEeeecCCCCCCCChHHHHHHHHHHHHHHHhCCC--cEEEEEcccCc
Q 004490 481 TRLHIIDFGIMYGFQWPCLIQRLSSRPGGAPKLRITGIDLPQPGFKPAERVEETGRRLAKYAETFKV--PFEFNAIAQKW 558 (749)
Q Consensus 481 ~~VHIIDfgI~~G~QWP~Liq~LA~R~gGPP~LRITgI~~p~~gfrpae~leeTGrRL~~~A~~~gV--pFeF~~Ia~~~ 558 (749)
..-+|+|+|.|.|. +...|+.+.| .++|||+.. ...++.. .+.++..|+ ..+|..- ..
T Consensus 118 ~~~~VLDiGCG~G~----~~~~La~~~g----~~v~gvD~s------~~~i~~a----~~~~~~~g~~~~v~~~~~--D~ 177 (340)
T PLN02244 118 RPKRIVDVGCGIGG----SSRYLARKYG----ANVKGITLS------PVQAARA----NALAAAQGLSDKVSFQVA--DA 177 (340)
T ss_pred CCCeEEEecCCCCH----HHHHHHHhcC----CEEEEEECC------HHHHHHH----HHHHHhcCCCCceEEEEc--Cc
Confidence 34579999999994 4556666543 489999963 2323322 233444454 2444332 22
Q ss_pred cccCcccccccCCceEEEEeccccccccccccccCCcHHHHHH-HHHhcCCCE
Q 004490 559 DTIQIEDLNIDSGEVLVVNCLYRFRNLLDETVVVDCPRNIVLN-LIRKMNPDV 610 (749)
Q Consensus 559 E~l~~edL~i~~dE~LaVN~~~~Lh~L~desv~~~spRd~vL~-~IR~L~P~V 610 (749)
+++ ....+.+=+|-|...++|+.| + ..+|. ..|-|+|.-
T Consensus 178 ~~~-----~~~~~~FD~V~s~~~~~h~~d-------~-~~~l~e~~rvLkpGG 217 (340)
T PLN02244 178 LNQ-----PFEDGQFDLVWSMESGEHMPD-------K-RKFVQELARVAAPGG 217 (340)
T ss_pred ccC-----CCCCCCccEEEECCchhccCC-------H-HHHHHHHHHHcCCCc
Confidence 222 222344445566777888864 2 34554 457899974
No 33
>TIGR02072 BioC biotin biosynthesis protein BioC. This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.
Probab=76.65 E-value=87 Score=31.41 Aligned_cols=44 Identities=20% Similarity=0.394 Sum_probs=27.3
Q ss_pred HHHHHhhhc---CCeeEEEEeccccccchHHHHHHHhcCCCCCCeEEEeeecCC
Q 004490 471 KTIMNLAEK---ATRLHIIDFGIMYGFQWPCLIQRLSSRPGGAPKLRITGIDLP 521 (749)
Q Consensus 471 qaILeA~~g---~~~VHIIDfgI~~G~QWP~Liq~LA~R~gGPP~LRITgI~~p 521 (749)
..+++.+.. .+..+|+|+|.+.|.- ...|+.+ + |..++|||+..
T Consensus 21 ~~l~~~~~~~~~~~~~~vLDlG~G~G~~----~~~l~~~--~-~~~~~~~~D~~ 67 (240)
T TIGR02072 21 KRLLALLKEKGIFIPASVLDIGCGTGYL----TRALLKR--F-PQAEFIALDIS 67 (240)
T ss_pred HHHHHHhhhhccCCCCeEEEECCCccHH----HHHHHHh--C-CCCcEEEEeCh
Confidence 334444443 3347899999999952 3333433 1 45789999963
No 34
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=76.53 E-value=26 Score=35.43 Aligned_cols=109 Identities=10% Similarity=0.146 Sum_probs=57.5
Q ss_pred hHHHHHhhhcCCeeEEEEeccccccchHHHHHHHhcCCCCCCeEEEeeecCCCCCCCChHHHHHHHHHHHHHHHhCCCc-
Q 004490 470 NKTIMNLAEKATRLHIIDFGIMYGFQWPCLIQRLSSRPGGAPKLRITGIDLPQPGFKPAERVEETGRRLAKYAETFKVP- 548 (749)
Q Consensus 470 NqaILeA~~g~~~VHIIDfgI~~G~QWP~Liq~LA~R~gGPP~LRITgI~~p~~gfrpae~leeTGrRL~~~A~~~gVp- 548 (749)
.+.+++.+.....-+|+|+|.|.|. +...||.+ | .+|||||.. .+.++...+ + ++..++.
T Consensus 19 ~~~l~~~l~~~~~~~vLDiGcG~G~----~a~~La~~-g----~~V~gvD~S------~~~i~~a~~-~---~~~~~~~~ 79 (197)
T PRK11207 19 HSEVLEAVKVVKPGKTLDLGCGNGR----NSLYLAAN-G----FDVTAWDKN------PMSIANLER-I---KAAENLDN 79 (197)
T ss_pred hHHHHHhcccCCCCcEEEECCCCCH----HHHHHHHC-C----CEEEEEeCC------HHHHHHHHH-H---HHHcCCCc
Confidence 4455566554455689999999996 33456655 2 489999963 233443332 2 3334554
Q ss_pred EEEEEcccCccccCcccccccCCceEEEEeccccccccccccccCCcHHHHHHHH-HhcCCCEE
Q 004490 549 FEFNAIAQKWDTIQIEDLNIDSGEVLVVNCLYRFRNLLDETVVVDCPRNIVLNLI-RKMNPDVF 611 (749)
Q Consensus 549 FeF~~Ia~~~E~l~~edL~i~~dE~LaVN~~~~Lh~L~desv~~~spRd~vL~~I-R~L~P~Vf 611 (749)
.++.. ..++++.. . ..=.+|+.+ +.+|++.++ .+..+++.| +.|+|.-.
T Consensus 80 v~~~~--~d~~~~~~---~-~~fD~I~~~--~~~~~~~~~------~~~~~l~~i~~~LkpgG~ 129 (197)
T PRK11207 80 LHTAV--VDLNNLTF---D-GEYDFILST--VVLMFLEAK------TIPGLIANMQRCTKPGGY 129 (197)
T ss_pred ceEEe--cChhhCCc---C-CCcCEEEEe--cchhhCCHH------HHHHHHHHHHHHcCCCcE
Confidence 33322 23333221 1 111334433 445666432 245566655 67899864
No 35
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=75.47 E-value=7.7 Score=41.49 Aligned_cols=99 Identities=24% Similarity=0.386 Sum_probs=65.9
Q ss_pred CCeeEEEEeccccccchHHHHHHHhcCCCCCCeEEEeeecCCCCCCCChHHHHHHHHHHHHHHHhCCCcEEEEEcccCcc
Q 004490 480 ATRLHIIDFGIMYGFQWPCLIQRLSSRPGGAPKLRITGIDLPQPGFKPAERVEETGRRLAKYAETFKVPFEFNAIAQKWD 559 (749)
Q Consensus 480 ~~~VHIIDfgI~~G~QWP~Liq~LA~R~gGPP~LRITgI~~p~~gfrpae~leeTGrRL~~~A~~~gVpFeF~~Ia~~~E 559 (749)
-..+-|+|+|.+-| .|-+.||+. | .++||||... +.|+.. ...|.+-||-.+|...
T Consensus 58 l~g~~vLDvGCGgG----~Lse~mAr~-G----a~VtgiD~se------~~I~~A----k~ha~e~gv~i~y~~~----- 113 (243)
T COG2227 58 LPGLRVLDVGCGGG----ILSEPLARL-G----ASVTGIDASE------KPIEVA----KLHALESGVNIDYRQA----- 113 (243)
T ss_pred CCCCeEEEecCCcc----HhhHHHHHC-C----CeeEEecCCh------HHHHHH----HHhhhhccccccchhh-----
Confidence 46678999999988 777888854 3 8999999631 223222 2345566777666554
Q ss_pred ccCcccccccCCceEEEEeccccccccccccccCCcHHHHHHHHHhcCCCEE
Q 004490 560 TIQIEDLNIDSGEVLVVNCLYRFRNLLDETVVVDCPRNIVLNLIRKMNPDVF 611 (749)
Q Consensus 560 ~l~~edL~i~~dE~LaVN~~~~Lh~L~desv~~~spRd~vL~~IR~L~P~Vf 611 (749)
..++|.-..+-.=||-|+=-|+|+.| |..-+....+.++|.-.
T Consensus 114 --~~edl~~~~~~FDvV~cmEVlEHv~d-------p~~~~~~c~~lvkP~G~ 156 (243)
T COG2227 114 --TVEDLASAGGQFDVVTCMEVLEHVPD-------PESFLRACAKLVKPGGI 156 (243)
T ss_pred --hHHHHHhcCCCccEEEEhhHHHccCC-------HHHHHHHHHHHcCCCcE
Confidence 34444433355668889999999876 45545556688999743
No 36
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=75.21 E-value=1.1e+02 Score=32.20 Aligned_cols=97 Identities=20% Similarity=0.372 Sum_probs=49.5
Q ss_pred eeEEEEeccccccchHHHHHHHhcCCCCCCeEEEeeecCCCCCCCChHHHHHHHHHHHHHHHhCCCc-EEEEEcccCccc
Q 004490 482 RLHIIDFGIMYGFQWPCLIQRLSSRPGGAPKLRITGIDLPQPGFKPAERVEETGRRLAKYAETFKVP-FEFNAIAQKWDT 560 (749)
Q Consensus 482 ~VHIIDfgI~~G~QWP~Liq~LA~R~gGPP~LRITgI~~p~~gfrpae~leeTGrRL~~~A~~~gVp-FeF~~Ia~~~E~ 560 (749)
.=+|+|+|.+-|.- ..+ ++... | +.-+|||||.. .+.++.+.++. +.+|++ .+| +...+++
T Consensus 78 g~~VLDiG~G~G~~-~~~---~a~~~-g-~~~~v~gvD~s------~~~l~~A~~~~----~~~g~~~v~~--~~~d~~~ 139 (272)
T PRK11873 78 GETVLDLGSGGGFD-CFL---AARRV-G-PTGKVIGVDMT------PEMLAKARANA----RKAGYTNVEF--RLGEIEA 139 (272)
T ss_pred CCEEEEeCCCCCHH-HHH---HHHHh-C-CCCEEEEECCC------HHHHHHHHHHH----HHcCCCCEEE--EEcchhh
Confidence 34899999998842 222 22221 1 34589999953 34444444332 334543 333 2223443
Q ss_pred cCcccccccCC--ceEEEEeccccccccccccccCCcHHHHHHHHHhcCCCE
Q 004490 561 IQIEDLNIDSG--EVLVVNCLYRFRNLLDETVVVDCPRNIVLNLIRKMNPDV 610 (749)
Q Consensus 561 l~~edL~i~~d--E~LaVN~~~~Lh~L~desv~~~spRd~vL~~IR~L~P~V 610 (749)
+. +..+ .+|+.||.+ |+..+ +...+=...|-|+|.-
T Consensus 140 l~-----~~~~~fD~Vi~~~v~--~~~~d-------~~~~l~~~~r~LkpGG 177 (272)
T PRK11873 140 LP-----VADNSVDVIISNCVI--NLSPD-------KERVFKEAFRVLKPGG 177 (272)
T ss_pred CC-----CCCCceeEEEEcCcc--cCCCC-------HHHHHHHHHHHcCCCc
Confidence 32 2222 355556654 45433 2334445568899984
No 37
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=73.79 E-value=22 Score=38.39 Aligned_cols=108 Identities=15% Similarity=0.184 Sum_probs=57.5
Q ss_pred HHHHHhhhcCCeeEEEEeccccccchHHHHHHHhcCCCCCCeEEEeeecCCCCCCCChHHHHHHHHHHHHHHHhCCCcEE
Q 004490 471 KTIMNLAEKATRLHIIDFGIMYGFQWPCLIQRLSSRPGGAPKLRITGIDLPQPGFKPAERVEETGRRLAKYAETFKVPFE 550 (749)
Q Consensus 471 qaILeA~~g~~~VHIIDfgI~~G~QWP~Liq~LA~R~gGPP~LRITgI~~p~~gfrpae~leeTGrRL~~~A~~~gVpFe 550 (749)
..|++.+.=+.-=||+|+|.| |=.+...+|++.| .++|||.+. .+.. +...+.++..|++=.
T Consensus 52 ~~~~~~~~l~~G~~vLDiGcG----wG~~~~~~a~~~g----~~v~gitlS------~~Q~----~~a~~~~~~~gl~~~ 113 (273)
T PF02353_consen 52 DLLCEKLGLKPGDRVLDIGCG----WGGLAIYAAERYG----CHVTGITLS------EEQA----EYARERIREAGLEDR 113 (273)
T ss_dssp HHHHTTTT--TT-EEEEES-T----TSHHHHHHHHHH------EEEEEES-------HHHH----HHHHHHHHCSTSSST
T ss_pred HHHHHHhCCCCCCEEEEeCCC----ccHHHHHHHHHcC----cEEEEEECC------HHHH----HHHHHHHHhcCCCCc
Confidence 345666544455689999877 5588888998863 699999863 2333 334455566787622
Q ss_pred EEEcccCccccCcccccccCCceEEEEeccccccccccccccCCcHHHHHHHH-HhcCCCE
Q 004490 551 FNAIAQKWDTIQIEDLNIDSGEVLVVNCLYRFRNLLDETVVVDCPRNIVLNLI-RKMNPDV 610 (749)
Q Consensus 551 F~~Ia~~~E~l~~edL~i~~dE~LaVN~~~~Lh~L~desv~~~spRd~vL~~I-R~L~P~V 610 (749)
-..+...+.++.. .=|-++ ++-.+.|+..+ -...+++.| +-|+|.-
T Consensus 114 v~v~~~D~~~~~~-----~fD~Iv---Si~~~Ehvg~~------~~~~~f~~~~~~LkpgG 160 (273)
T PF02353_consen 114 VEVRLQDYRDLPG-----KFDRIV---SIEMFEHVGRK------NYPAFFRKISRLLKPGG 160 (273)
T ss_dssp EEEEES-GGG--------S-SEEE---EESEGGGTCGG------GHHHHHHHHHHHSETTE
T ss_pred eEEEEeeccccCC-----CCCEEE---EEechhhcChh------HHHHHHHHHHHhcCCCc
Confidence 2222233433332 112222 33446666432 246788887 5699974
No 38
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=73.54 E-value=41 Score=38.55 Aligned_cols=113 Identities=13% Similarity=0.202 Sum_probs=58.8
Q ss_pred HHHHHhhhcCCeeEEEEeccccccchHHHHHHHhcCCCCCCeEEEeeecCCCCCCCChHHHHHHHHHHHHHHHhCCCcEE
Q 004490 471 KTIMNLAEKATRLHIIDFGIMYGFQWPCLIQRLSSRPGGAPKLRITGIDLPQPGFKPAERVEETGRRLAKYAETFKVPFE 550 (749)
Q Consensus 471 qaILeA~~g~~~VHIIDfgI~~G~QWP~Liq~LA~R~gGPP~LRITgI~~p~~gfrpae~leeTGrRL~~~A~~~gVpFe 550 (749)
..|++.+.....-+|+|+|.|.|.- ...|+.+. -+|||||.. .+.++.. +.+. . ..-..+
T Consensus 27 ~~il~~l~~~~~~~vLDlGcG~G~~----~~~la~~~-----~~v~giD~s------~~~l~~a-~~~~---~-~~~~i~ 86 (475)
T PLN02336 27 PEILSLLPPYEGKSVLELGAGIGRF----TGELAKKA-----GQVIALDFI------ESVIKKN-ESIN---G-HYKNVK 86 (475)
T ss_pred hHHHhhcCccCCCEEEEeCCCcCHH----HHHHHhhC-----CEEEEEeCC------HHHHHHH-HHHh---c-cCCceE
Confidence 4556666544445899999999943 34455442 178999953 2334322 2111 1 111233
Q ss_pred EEEcccCccccCcccccccCCceEEEEeccccccccccccccCCcHHHHHHHH-HhcCCCEEEEE
Q 004490 551 FNAIAQKWDTIQIEDLNIDSGEVLVVNCLYRFRNLLDETVVVDCPRNIVLNLI-RKMNPDVFVLG 614 (749)
Q Consensus 551 F~~Ia~~~E~l~~edL~i~~dE~LaVN~~~~Lh~L~desv~~~spRd~vL~~I-R~L~P~Vfv~~ 614 (749)
|... ..++ .++....+.+=+|-|.+.|||+.++. ...+|..+ |-|+|.-.++.
T Consensus 87 ~~~~--d~~~---~~~~~~~~~fD~I~~~~~l~~l~~~~------~~~~l~~~~r~Lk~gG~l~~ 140 (475)
T PLN02336 87 FMCA--DVTS---PDLNISDGSVDLIFSNWLLMYLSDKE------VENLAERMVKWLKVGGYIFF 140 (475)
T ss_pred EEEe--cccc---cccCCCCCCEEEEehhhhHHhCCHHH------HHHHHHHHHHhcCCCeEEEE
Confidence 3221 1111 11222233344555667788986532 34566655 55899876543
No 39
>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes. The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.
Probab=70.73 E-value=25 Score=39.07 Aligned_cols=132 Identities=20% Similarity=0.250 Sum_probs=70.8
Q ss_pred hHhHHHHHhhhc----CCeeEEEEeccccccchHHHHHHHhcCCCCCCeEEEeeecCCCCCCCChHHHHHHHHHHHHHHH
Q 004490 468 FSNKTIMNLAEK----ATRLHIIDFGIMYGFQWPCLIQRLSSRPGGAPKLRITGIDLPQPGFKPAERVEETGRRLAKYAE 543 (749)
Q Consensus 468 tANqaILeA~~g----~~~VHIIDfgI~~G~QWP~Liq~LA~R~gGPP~LRITgI~~p~~gfrpae~leeTGrRL~~~A~ 543 (749)
.-..-|-+.+.. ....+|+|+|.|.|. .|......+. =++.|||+. .+.|+++.+|..+.-+
T Consensus 45 vKs~LI~~~~~~~~~~~~~~~VLDl~CGkGG---DL~Kw~~~~i-----~~~vg~Dis------~~si~ea~~Ry~~~~~ 110 (331)
T PF03291_consen 45 VKSVLIQKYAKKVKQNRPGLTVLDLCCGKGG---DLQKWQKAKI-----KHYVGIDIS------EESIEEARERYKQLKK 110 (331)
T ss_dssp HHHHHHHHHCHCCCCTTTT-EEEEET-TTTT---THHHHHHTT------SEEEEEES-------HHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhhhccCCCCeEEEecCCCch---hHHHHHhcCC-----CEEEEEeCC------HHHHHHHHHHHHHhcc
Confidence 333444444432 277999999999983 3444443332 367888863 6789999999866553
Q ss_pred hC-----C--CcEEEEEcccCccccCcccccccCCceEEEEeccccccccccccccCCcHHHHHHHH-HhcCCCE-EEEE
Q 004490 544 TF-----K--VPFEFNAIAQKWDTIQIEDLNIDSGEVLVVNCLYRFRNLLDETVVVDCPRNIVLNLI-RKMNPDV-FVLG 614 (749)
Q Consensus 544 ~~-----g--VpFeF~~Ia~~~E~l~~edL~i~~dE~LaVN~~~~Lh~L~desv~~~spRd~vL~~I-R~L~P~V-fv~~ 614 (749)
.. + .+-+|.....-++.|. +.+.-....+=+|+|+|.||+...-. ... ..+|++| +.|+|.- ||-+
T Consensus 111 ~~~~~~~~~~f~a~f~~~D~f~~~l~-~~~~~~~~~FDvVScQFalHY~Fese---~~a-r~~l~Nvs~~Lk~GG~FIgT 185 (331)
T PF03291_consen 111 RNNSKQYRFDFIAEFIAADCFSESLR-EKLPPRSRKFDVVSCQFALHYAFESE---EKA-RQFLKNVSSLLKPGGYFIGT 185 (331)
T ss_dssp STT-HTSEECCEEEEEESTTCCSHHH-CTSSSTTS-EEEEEEES-GGGGGSSH---HHH-HHHHHHHHHTEEEEEEEEEE
T ss_pred ccccccccccchhheeccccccchhh-hhccccCCCcceeehHHHHHHhcCCH---HHH-HHHHHHHHHhcCCCCEEEEE
Confidence 21 1 2223332211111111 11222234788999999999997421 122 3455555 6799974 5555
Q ss_pred EecC
Q 004490 615 IVNG 618 (749)
Q Consensus 615 e~ng 618 (749)
.+++
T Consensus 186 ~~d~ 189 (331)
T PF03291_consen 186 TPDS 189 (331)
T ss_dssp EE-H
T ss_pred ecCH
Confidence 5554
No 40
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=70.17 E-value=1e+02 Score=32.01 Aligned_cols=43 Identities=21% Similarity=0.434 Sum_probs=28.8
Q ss_pred hHHHHHhhhcCCeeEEEEeccccccchHHHHHHHhcCCCCCCeEEEeeecCC
Q 004490 470 NKTIMNLAEKATRLHIIDFGIMYGFQWPCLIQRLSSRPGGAPKLRITGIDLP 521 (749)
Q Consensus 470 NqaILeA~~g~~~VHIIDfgI~~G~QWP~Liq~LA~R~gGPP~LRITgI~~p 521 (749)
-+.+++.+.....-+|+|+|.+.|. +.+.|+.+ + -++||||..
T Consensus 31 a~~l~~~l~~~~~~~vLDiGcG~G~----~~~~l~~~-~----~~v~~~D~s 73 (251)
T PRK10258 31 ADALLAMLPQRKFTHVLDAGCGPGW----MSRYWRER-G----SQVTALDLS 73 (251)
T ss_pred HHHHHHhcCccCCCeEEEeeCCCCH----HHHHHHHc-C----CeEEEEECC
Confidence 3444555554444579999999993 55666654 2 489999963
No 41
>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase. This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.
Probab=68.38 E-value=58 Score=33.15 Aligned_cols=58 Identities=16% Similarity=0.244 Sum_probs=36.8
Q ss_pred hHhHhHHHHHhhh--cCCeeEEEEeccccccchHHHHHHHhcCCCCCCeEEEeeecCCCCCCCChHHHHHHHHHH
Q 004490 466 NFFSNKTIMNLAE--KATRLHIIDFGIMYGFQWPCLIQRLSSRPGGAPKLRITGIDLPQPGFKPAERVEETGRRL 538 (749)
Q Consensus 466 ~ftANqaILeA~~--g~~~VHIIDfgI~~G~QWP~Liq~LA~R~gGPP~LRITgI~~p~~gfrpae~leeTGrRL 538 (749)
+-.....+++.+. ..+.-+|+|+|.+.|. +...|+.+. .+|||||.. .+.++...+++
T Consensus 38 ~~~~~~~~~~~l~~~~~~~~~vLDiGcG~G~----~~~~la~~~-----~~v~gvD~s------~~~i~~a~~~~ 97 (219)
T TIGR02021 38 RAAMRRKLLDWLPKDPLKGKRVLDAGCGTGL----LSIELAKRG-----AIVKAVDIS------EQMVQMARNRA 97 (219)
T ss_pred HHHHHHHHHHHHhcCCCCCCEEEEEeCCCCH----HHHHHHHCC-----CEEEEEECC------HHHHHHHHHHH
Confidence 3444556666665 2456799999999994 555666542 389999963 34454444444
No 42
>TIGR02081 metW methionine biosynthesis protein MetW. This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.
Probab=66.85 E-value=69 Score=32.06 Aligned_cols=39 Identities=28% Similarity=0.449 Sum_probs=25.3
Q ss_pred HHHHhhhcCCeeEEEEeccccccchHHHHHHHhcCCCCCCeEEEeeecC
Q 004490 472 TIMNLAEKATRLHIIDFGIMYGFQWPCLIQRLSSRPGGAPKLRITGIDL 520 (749)
Q Consensus 472 aILeA~~g~~~VHIIDfgI~~G~QWP~Liq~LA~R~gGPP~LRITgI~~ 520 (749)
.|.+.+.. .-+|+|+|.+.|. ++..|+.+. ..+++||+.
T Consensus 6 ~i~~~i~~--~~~iLDiGcG~G~----~~~~l~~~~----~~~~~giD~ 44 (194)
T TIGR02081 6 SILNLIPP--GSRVLDLGCGDGE----LLALLRDEK----QVRGYGIEI 44 (194)
T ss_pred HHHHhcCC--CCEEEEeCCCCCH----HHHHHHhcc----CCcEEEEeC
Confidence 34444432 2379999999994 556676553 236799985
No 43
>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional
Probab=65.93 E-value=2e+02 Score=31.67 Aligned_cols=139 Identities=14% Similarity=0.108 Sum_probs=67.9
Q ss_pred CCHHHHHHHHHHHhhhCCccchhhHhH-------------hHHHHHhhhcCCeeEEEEeccccccchHHHHHHHhcCCCC
Q 004490 443 TSAADVLKAYHLFLAACPFRKLSNFFS-------------NKTIMNLAEKATRLHIIDFGIMYGFQWPCLIQRLSSRPGG 509 (749)
Q Consensus 443 ~s~~e~lkAy~~f~~~~Pf~kfa~ftA-------------NqaILeA~~g~~~VHIIDfgI~~G~QWP~Liq~LA~R~gG 509 (749)
.+..+....|..+....||.|-.+-.- -+.|+..+..-+--+|+|+|.+.|. +...++.+ |
T Consensus 71 ~~~~~~~~l~~~l~~~~pwrkg~~~~~~~~~~~ew~s~~k~~~l~~~l~~l~g~~VLDIGCG~G~----~~~~la~~--g 144 (322)
T PRK15068 71 LSEGQRKRIENLLRALMPWRKGPFSLFGIHIDTEWRSDWKWDRVLPHLSPLKGRTVLDVGCGNGY----HMWRMLGA--G 144 (322)
T ss_pred CCHHHHHHHHHHHHhhcCcccCCccccCeeecceehHHhHHHHHHHhhCCCCCCEEEEeccCCcH----HHHHHHHc--C
Confidence 344444455666666677765544321 2233444432233489999999994 22345544 3
Q ss_pred CCeEEEeeecCCCCCCCChHHHHHHHHHHHHHHHhCCCcEEEEEcccCccccCcccccccCCceEEEEeccccccccccc
Q 004490 510 APKLRITGIDLPQPGFKPAERVEETGRRLAKYAETFKVPFEFNAIAQKWDTIQIEDLNIDSGEVLVVNCLYRFRNLLDET 589 (749)
Q Consensus 510 PP~LRITgI~~p~~gfrpae~leeTGrRL~~~A~~~gVpFeF~~Ia~~~E~l~~edL~i~~dE~LaVN~~~~Lh~L~des 589 (749)
+- +++|||.. ...+.+ .+...+++.. ..+.+|... .++++.. ++-+=+|-|+..|||+.
T Consensus 145 ~~--~V~GiD~S------~~~l~q-~~a~~~~~~~-~~~i~~~~~--d~e~lp~------~~~FD~V~s~~vl~H~~--- 203 (322)
T PRK15068 145 AK--LVVGIDPS------QLFLCQ-FEAVRKLLGN-DQRAHLLPL--GIEQLPA------LKAFDTVFSMGVLYHRR--- 203 (322)
T ss_pred CC--EEEEEcCC------HHHHHH-HHHHHHhcCC-CCCeEEEeC--CHHHCCC------cCCcCEEEECChhhccC---
Confidence 32 59999942 111211 1111222211 223444332 3343322 12222333555577753
Q ss_pred cccCCcHHHHHHHHHhcCCCEEE
Q 004490 590 VVVDCPRNIVLNLIRKMNPDVFV 612 (749)
Q Consensus 590 v~~~spRd~vL~~IR~L~P~Vfv 612 (749)
+|.+.+-+.-+.|+|.-.+
T Consensus 204 ----dp~~~L~~l~~~LkpGG~l 222 (322)
T PRK15068 204 ----SPLDHLKQLKDQLVPGGEL 222 (322)
T ss_pred ----CHHHHHHHHHHhcCCCcEE
Confidence 4666555666789998533
No 44
>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....
Probab=65.56 E-value=43 Score=34.57 Aligned_cols=43 Identities=26% Similarity=0.326 Sum_probs=27.5
Q ss_pred HHHHhhhcCCeeEEEEeccccccchHHHHHHHhcCCCCCCeEEEeeecCC
Q 004490 472 TIMNLAEKATRLHIIDFGIMYGFQWPCLIQRLSSRPGGAPKLRITGIDLP 521 (749)
Q Consensus 472 aILeA~~g~~~VHIIDfgI~~G~QWP~Liq~LA~R~gGPP~LRITgI~~p 521 (749)
.++++..=...-+|||+|-+.| .+..+|+.+. |.||+|..|+|
T Consensus 91 ~~~~~~d~~~~~~vvDvGGG~G----~~~~~l~~~~---P~l~~~v~Dlp 133 (241)
T PF00891_consen 91 ILLEAFDFSGFKTVVDVGGGSG----HFAIALARAY---PNLRATVFDLP 133 (241)
T ss_dssp HHHHHSTTTTSSEEEEET-TTS----HHHHHHHHHS---TTSEEEEEE-H
T ss_pred hhhccccccCccEEEeccCcch----HHHHHHHHHC---CCCcceeeccH
Confidence 3444444344458999999999 3444455444 78999999986
No 45
>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB. When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.
Probab=62.83 E-value=1.6e+02 Score=30.47 Aligned_cols=108 Identities=15% Similarity=0.196 Sum_probs=64.9
Q ss_pred HHHHHhhhcCCeeEEEEeccccccchHHHHHHHhcCCCCCCeEEEeeecCCCCCCCChHHHHHHHHHHHHHHHhCCCcEE
Q 004490 471 KTIMNLAEKATRLHIIDFGIMYGFQWPCLIQRLSSRPGGAPKLRITGIDLPQPGFKPAERVEETGRRLAKYAETFKVPFE 550 (749)
Q Consensus 471 qaILeA~~g~~~VHIIDfgI~~G~QWP~Liq~LA~R~gGPP~LRITgI~~p~~gfrpae~leeTGrRL~~~A~~~gVpFe 550 (749)
..|++|+.--+.-.++|+|.|.|-= --.||++- ..+|+||.. .. .-.+|.+.|++-+++.+
T Consensus 20 s~v~~a~~~~~~g~~LDlgcG~GRN----alyLA~~G-----~~VtAvD~s------~~----al~~l~~~a~~~~l~i~ 80 (192)
T PF03848_consen 20 SEVLEAVPLLKPGKALDLGCGEGRN----ALYLASQG-----FDVTAVDIS------PV----ALEKLQRLAEEEGLDIR 80 (192)
T ss_dssp HHHHHHCTTS-SSEEEEES-TTSHH----HHHHHHTT------EEEEEESS------HH----HHHHHHHHHHHTT-TEE
T ss_pred HHHHHHHhhcCCCcEEEcCCCCcHH----HHHHHHCC-----CeEEEEECC------HH----HHHHHHHHHhhcCceeE
Confidence 4567777666677899999999931 12366653 789999964 22 23457888999999976
Q ss_pred EEEcccCccccCcccccccCCceEEEEeccccccccccccccCCcHHHHHHHHH-hcCCCEE
Q 004490 551 FNAIAQKWDTIQIEDLNIDSGEVLVVNCLYRFRNLLDETVVVDCPRNIVLNLIR-KMNPDVF 611 (749)
Q Consensus 551 F~~Ia~~~E~l~~edL~i~~dE~LaVN~~~~Lh~L~desv~~~spRd~vL~~IR-~L~P~Vf 611 (749)
.... .+++ ..+. ++.=+|.+...|++|..+ -++.+++.|+ .++|--+
T Consensus 81 ~~~~--Dl~~-----~~~~-~~yD~I~st~v~~fL~~~------~~~~i~~~m~~~~~pGG~ 128 (192)
T PF03848_consen 81 TRVA--DLND-----FDFP-EEYDFIVSTVVFMFLQRE------LRPQIIENMKAATKPGGY 128 (192)
T ss_dssp EEE---BGCC-----BS-T-TTEEEEEEESSGGGS-GG------GHHHHHHHHHHTEEEEEE
T ss_pred EEEe--cchh-----cccc-CCcCEEEEEEEeccCCHH------HHHHHHHHHHhhcCCcEE
Confidence 6543 2222 2332 344456666777788644 2567777775 4788744
No 46
>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase. Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme
Probab=61.70 E-value=74 Score=32.66 Aligned_cols=99 Identities=12% Similarity=0.105 Sum_probs=51.1
Q ss_pred EEEEeccccccchHHHHHHHhcCCCCCCeEEEeeecCCCCCCCChHHHHHHHHHHHHHHHhCCCcEEEEEcccCccccCc
Q 004490 484 HIIDFGIMYGFQWPCLIQRLSSRPGGAPKLRITGIDLPQPGFKPAERVEETGRRLAKYAETFKVPFEFNAIAQKWDTIQI 563 (749)
Q Consensus 484 HIIDfgI~~G~QWP~Liq~LA~R~gGPP~LRITgI~~p~~gfrpae~leeTGrRL~~~A~~~gVpFeF~~Ia~~~E~l~~ 563 (749)
.|+|+|.+.|..-..|.+.+ |..++|||+.. .+.++.+.+++. ++.+. .. ...+
T Consensus 46 ~VLDiGCG~G~~~~~L~~~~-------~~~~v~giDiS------~~~l~~A~~~~~------~~~~~--~~--d~~~--- 99 (204)
T TIGR03587 46 SILELGANIGMNLAALKRLL-------PFKHIYGVEIN------EYAVEKAKAYLP------NINII--QG--SLFD--- 99 (204)
T ss_pred cEEEEecCCCHHHHHHHHhC-------CCCeEEEEECC------HHHHHHHHhhCC------CCcEE--Ee--eccC---
Confidence 59999999995554443322 23589999963 344544433221 23221 11 1111
Q ss_pred ccccccCCceEEEEeccccccccccccccCCcHHHHHHHHHhcCCCEEEEEEec
Q 004490 564 EDLNIDSGEVLVVNCLYRFRNLLDETVVVDCPRNIVLNLIRKMNPDVFVLGIVN 617 (749)
Q Consensus 564 edL~i~~dE~LaVN~~~~Lh~L~desv~~~spRd~vL~~IR~L~P~Vfv~~e~n 617 (749)
....+.+=+|-|..-|+|+..+ -+..+++.+.+..=+.+++++..
T Consensus 100 ---~~~~~sfD~V~~~~vL~hl~p~------~~~~~l~el~r~~~~~v~i~e~~ 144 (204)
T TIGR03587 100 ---PFKDNFFDLVLTKGVLIHINPD------NLPTAYRELYRCSNRYILIAEYY 144 (204)
T ss_pred ---CCCCCCEEEEEECChhhhCCHH------HHHHHHHHHHhhcCcEEEEEEee
Confidence 1112233334455667787321 24556666666555666666653
No 47
>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed
Probab=61.44 E-value=31 Score=36.91 Aligned_cols=56 Identities=18% Similarity=0.371 Sum_probs=38.7
Q ss_pred hhCCccchhh-HhHhHHHHHhh----hcCCeeEEEEeccccccchHHHHHHHhcCCCCCCeEEEeeecCC
Q 004490 457 AACPFRKLSN-FFSNKTIMNLA----EKATRLHIIDFGIMYGFQWPCLIQRLSSRPGGAPKLRITGIDLP 521 (749)
Q Consensus 457 ~~~Pf~kfa~-ftANqaILeA~----~g~~~VHIIDfgI~~G~QWP~Liq~LA~R~gGPP~LRITgI~~p 521 (749)
...|=.++++ |..|+.|++.+ .-.+.-+|+|+|.|.| .+...|+.+ ++ ++|||+..
T Consensus 13 ~~~~~k~~gq~fl~~~~i~~~i~~~l~~~~~~~VLEiG~G~G----~lt~~L~~~--~~---~v~avE~d 73 (272)
T PRK00274 13 GHRAKKSLGQNFLIDENILDKIVDAAGPQPGDNVLEIGPGLG----ALTEPLLER--AA---KVTAVEID 73 (272)
T ss_pred CCCCCcccCcCcCCCHHHHHHHHHhcCCCCcCeEEEeCCCcc----HHHHHHHHh--CC---cEEEEECC
Confidence 4567677776 66676666543 3345568999999998 466667766 22 89999964
No 48
>TIGR00138 gidB 16S rRNA methyltransferase GidB. GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.
Probab=59.15 E-value=81 Score=31.75 Aligned_cols=97 Identities=19% Similarity=0.271 Sum_probs=49.5
Q ss_pred eeEEEEeccccccchHHHHHHHhcCCCCCCeEEEeeecCCCCCCCChHHHHHHHHHHHHHHHhCCCc-EEEEEcccCccc
Q 004490 482 RLHIIDFGIMYGFQWPCLIQRLSSRPGGAPKLRITGIDLPQPGFKPAERVEETGRRLAKYAETFKVP-FEFNAIAQKWDT 560 (749)
Q Consensus 482 ~VHIIDfgI~~G~QWP~Liq~LA~R~gGPP~LRITgI~~p~~gfrpae~leeTGrRL~~~A~~~gVp-FeF~~Ia~~~E~ 560 (749)
.-+|+|+|.|.|. +... ||.+. |..++||||.. .+.++.+ .+.+++.|++ ++| +...+++
T Consensus 43 ~~~vLDiGcGtG~-~s~~---la~~~---~~~~V~~iD~s------~~~~~~a----~~~~~~~~~~~i~~--i~~d~~~ 103 (181)
T TIGR00138 43 GKKVIDIGSGAGF-PGIP---LAIAR---PELKLTLLESN------HKKVAFL----REVKAELGLNNVEI--VNGRAED 103 (181)
T ss_pred CCeEEEecCCCCc-cHHH---HHHHC---CCCeEEEEeCc------HHHHHHH----HHHHHHhCCCCeEE--Eecchhh
Confidence 4589999999993 1221 22211 34689999953 2333333 3344556664 444 3334444
Q ss_pred cCcccccccCCceEEEEeccccccccccccccCCcHHHHHHHH-HhcCCCEEEEEE
Q 004490 561 IQIEDLNIDSGEVLVVNCLYRFRNLLDETVVVDCPRNIVLNLI-RKMNPDVFVLGI 615 (749)
Q Consensus 561 l~~edL~i~~dE~LaVN~~~~Lh~L~desv~~~spRd~vL~~I-R~L~P~Vfv~~e 615 (749)
+.. ..+=++++.|+ ++++ ..++..+ +-|+|.-.++..
T Consensus 104 ~~~----~~~fD~I~s~~---~~~~-----------~~~~~~~~~~LkpgG~lvi~ 141 (181)
T TIGR00138 104 FQH----EEQFDVITSRA---LASL-----------NVLLELTLNLLKVGGYFLAY 141 (181)
T ss_pred ccc----cCCccEEEehh---hhCH-----------HHHHHHHHHhcCCCCEEEEE
Confidence 321 11223566554 3333 2344544 458998655433
No 49
>PLN02490 MPBQ/MSBQ methyltransferase
Probab=57.81 E-value=1.6e+02 Score=33.08 Aligned_cols=33 Identities=21% Similarity=0.251 Sum_probs=22.5
Q ss_pred CeeEEEEeccccccchHHHHHHHhcCCCCCCeEEEeeecC
Q 004490 481 TRLHIIDFGIMYGFQWPCLIQRLSSRPGGAPKLRITGIDL 520 (749)
Q Consensus 481 ~~VHIIDfgI~~G~QWP~Liq~LA~R~gGPP~LRITgI~~ 520 (749)
...+|+|+|.+.|.-... |+.+.++ .++|+||.
T Consensus 113 ~~~~VLDLGcGtG~~~l~----La~~~~~---~~VtgVD~ 145 (340)
T PLN02490 113 RNLKVVDVGGGTGFTTLG----IVKHVDA---KNVTILDQ 145 (340)
T ss_pred CCCEEEEEecCCcHHHHH----HHHHCCC---CEEEEEEC
Confidence 457999999999964333 3433222 58999985
No 50
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=56.85 E-value=1.5e+02 Score=32.54 Aligned_cols=114 Identities=13% Similarity=0.224 Sum_probs=65.9
Q ss_pred HHHHHhhhcCCeeEEEEeccccccchHHHHHHHhcCCCCCCeEEEeeecCCCCCCCChHHHHHHHHHHHHHHHhCCCcEE
Q 004490 471 KTIMNLAEKATRLHIIDFGIMYGFQWPCLIQRLSSRPGGAPKLRITGIDLPQPGFKPAERVEETGRRLAKYAETFKVPFE 550 (749)
Q Consensus 471 qaILeA~~g~~~VHIIDfgI~~G~QWP~Liq~LA~R~gGPP~LRITgI~~p~~gfrpae~leeTGrRL~~~A~~~gVpFe 550 (749)
..|++-+.=+.--||.|+|.| |=.|+...|.+-| +++|||++. .+..+...+| ++..|++=.
T Consensus 62 ~~~~~kl~L~~G~~lLDiGCG----WG~l~~~aA~~y~----v~V~GvTlS------~~Q~~~~~~r----~~~~gl~~~ 123 (283)
T COG2230 62 DLILEKLGLKPGMTLLDIGCG----WGGLAIYAAEEYG----VTVVGVTLS------EEQLAYAEKR----IAARGLEDN 123 (283)
T ss_pred HHHHHhcCCCCCCEEEEeCCC----hhHHHHHHHHHcC----CEEEEeeCC------HHHHHHHHHH----HHHcCCCcc
Confidence 334444444667799999876 6689999998864 799999974 3333333333 444566533
Q ss_pred EEEcccCccccCcccccccCCceEEEEeccccccccccccccCCcHHHHHHHHHh-cCCC--EEEEEEe
Q 004490 551 FNAIAQKWDTIQIEDLNIDSGEVLVVNCLYRFRNLLDETVVVDCPRNIVLNLIRK-MNPD--VFVLGIV 616 (749)
Q Consensus 551 F~~Ia~~~E~l~~edL~i~~dE~LaVN~~~~Lh~L~desv~~~spRd~vL~~IR~-L~P~--Vfv~~e~ 616 (749)
-+.+.+.|.++... +=.|-++=.+.|+..+. -+.+++.+++ |+|+ ++.|++.
T Consensus 124 v~v~l~d~rd~~e~--------fDrIvSvgmfEhvg~~~------~~~ff~~~~~~L~~~G~~llh~I~ 178 (283)
T COG2230 124 VEVRLQDYRDFEEP--------FDRIVSVGMFEHVGKEN------YDDFFKKVYALLKPGGRMLLHSIT 178 (283)
T ss_pred cEEEeccccccccc--------cceeeehhhHHHhCccc------HHHHHHHHHhhcCCCceEEEEEec
Confidence 33334455544432 11233444566775432 4678888755 7776 3344443
No 51
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=55.85 E-value=1.1e+02 Score=34.93 Aligned_cols=109 Identities=12% Similarity=0.088 Sum_probs=57.9
Q ss_pred EEEEeccccccchHHHHHHHhcCCCCCCeEEEeeecCCCCCCCChHHHHHHHHHHHHHHHhCCCcEEEEEcccCccccCc
Q 004490 484 HIIDFGIMYGFQWPCLIQRLSSRPGGAPKLRITGIDLPQPGFKPAERVEETGRRLAKYAETFKVPFEFNAIAQKWDTIQI 563 (749)
Q Consensus 484 HIIDfgI~~G~QWP~Liq~LA~R~gGPP~LRITgI~~p~~gfrpae~leeTGrRL~~~A~~~gVpFeF~~Ia~~~E~l~~ 563 (749)
+|+|+|.|.|. +--.|+.+. |..+||+||.. ...++-+.+++......-...++|..- .-++.+.
T Consensus 231 ~VLDLGCGtGv----i~i~la~~~---P~~~V~~vD~S------~~Av~~A~~N~~~n~~~~~~~v~~~~~-D~l~~~~- 295 (378)
T PRK15001 231 EIVDLGCGNGV----IGLTLLDKN---PQAKVVFVDES------PMAVASSRLNVETNMPEALDRCEFMIN-NALSGVE- 295 (378)
T ss_pred eEEEEeccccH----HHHHHHHhC---CCCEEEEEECC------HHHHHHHHHHHHHcCcccCceEEEEEc-cccccCC-
Confidence 79999999996 334555553 56899999964 455666655554332110012344321 1111111
Q ss_pred ccccccCCceEEEEeccccccccccccccCCcHHHHHH-HHHhcCCCEEEEEEe
Q 004490 564 EDLNIDSGEVLVVNCLYRFRNLLDETVVVDCPRNIVLN-LIRKMNPDVFVLGIV 616 (749)
Q Consensus 564 edL~i~~dE~LaVN~~~~Lh~L~desv~~~spRd~vL~-~IR~L~P~Vfv~~e~ 616 (749)
-..=++|+.|-.|+..+-..+. -...++. .-+.|+|.-.+..+.
T Consensus 296 ----~~~fDlIlsNPPfh~~~~~~~~-----ia~~l~~~a~~~LkpGG~L~iV~ 340 (378)
T PRK15001 296 ----PFRFNAVLCNPPFHQQHALTDN-----VAWEMFHHARRCLKINGELYIVA 340 (378)
T ss_pred ----CCCEEEEEECcCcccCccCCHH-----HHHHHHHHHHHhcccCCEEEEEE
Confidence 1122577888888654422211 1223444 446789986554443
No 52
>PF13679 Methyltransf_32: Methyltransferase domain
Probab=49.21 E-value=45 Score=31.96 Aligned_cols=41 Identities=29% Similarity=0.503 Sum_probs=27.1
Q ss_pred hcCCeeEEEEeccccccchHHHHHHHhcCCCCCCeEEEeeecCC
Q 004490 478 EKATRLHIIDFGIMYGFQWPCLIQRLSSRPGGAPKLRITGIDLP 521 (749)
Q Consensus 478 ~g~~~VHIIDfgI~~G~QWP~Liq~LA~R~gGPP~LRITgI~~p 521 (749)
...+..||||+|-|.|.==-.|-..|... .+.++|+|||..
T Consensus 22 ~~~~~~~vvD~GsG~GyLs~~La~~l~~~---~~~~~v~~iD~~ 62 (141)
T PF13679_consen 22 ESKRCITVVDLGSGKGYLSRALAHLLCNS---SPNLRVLGIDCN 62 (141)
T ss_pred ccCCCCEEEEeCCChhHHHHHHHHHHHhc---CCCCeEEEEECC
Confidence 44789999999999995222222222222 277999999964
No 53
>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase. In E. coli, this protein flanks the DNA repair protein MutY, also called micA.
Probab=49.12 E-value=84 Score=31.66 Aligned_cols=32 Identities=16% Similarity=0.336 Sum_probs=23.2
Q ss_pred eeEEEEeccccccchHHHHHHHhcCCCCCCeEEEeeecC
Q 004490 482 RLHIIDFGIMYGFQWPCLIQRLSSRPGGAPKLRITGIDL 520 (749)
Q Consensus 482 ~VHIIDfgI~~G~QWP~Liq~LA~R~gGPP~LRITgI~~ 520 (749)
.--|+|+|.|.|. ++-.||.+. |...++||+.
T Consensus 17 ~~~ilDiGcG~G~----~~~~la~~~---p~~~v~gvD~ 48 (194)
T TIGR00091 17 APLHLEIGCGKGR----FLIDMAKQN---PDKNFLGIEI 48 (194)
T ss_pred CceEEEeCCCccH----HHHHHHHhC---CCCCEEEEEe
Confidence 3469999999983 444556553 5578999996
No 54
>TIGR00452 methyltransferase, putative. Known examples to date are restricted to the proteobacteria.
Probab=48.39 E-value=1.6e+02 Score=32.73 Aligned_cols=41 Identities=24% Similarity=0.383 Sum_probs=25.6
Q ss_pred HHHHhhhcCCeeEEEEeccccccchHHHHHHHhcCCCCCCeEEEeeecC
Q 004490 472 TIMNLAEKATRLHIIDFGIMYGFQWPCLIQRLSSRPGGAPKLRITGIDL 520 (749)
Q Consensus 472 aILeA~~g~~~VHIIDfgI~~G~QWP~Liq~LA~R~gGPP~LRITgI~~ 520 (749)
+|+..+...+.-+|+|+|.+.|. ++..++.+ |+ -+++|||.
T Consensus 112 ~~l~~l~~~~g~~VLDvGCG~G~----~~~~~~~~--g~--~~v~GiDp 152 (314)
T TIGR00452 112 RVLPHLSPLKGRTILDVGCGSGY----HMWRMLGH--GA--KSLVGIDP 152 (314)
T ss_pred HHHHhcCCCCCCEEEEeccCCcH----HHHHHHHc--CC--CEEEEEcC
Confidence 34554433333489999999996 34444443 33 27899985
No 55
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=47.44 E-value=2.1e+02 Score=31.92 Aligned_cols=106 Identities=21% Similarity=0.275 Sum_probs=57.5
Q ss_pred EEEEeccccccchHHHHHHHhcCCCCCCeEEEeeecCCCCCCCChHHHHHHHHHHHHHHHhCCCcEEEEEcccCccccCc
Q 004490 484 HIIDFGIMYGFQWPCLIQRLSSRPGGAPKLRITGIDLPQPGFKPAERVEETGRRLAKYAETFKVPFEFNAIAQKWDTIQI 563 (749)
Q Consensus 484 HIIDfgI~~G~QWP~Liq~LA~R~gGPP~LRITgI~~p~~gfrpae~leeTGrRL~~~A~~~gVpFeF~~Ia~~~E~l~~ 563 (749)
+|+|+|.|.|. +-..|+.+. |..++|+||.. ...++.+.+++.. .++..++... ...
T Consensus 199 ~VLDlGCG~G~----ls~~la~~~---p~~~v~~vDis------~~Al~~A~~nl~~----n~l~~~~~~~--D~~---- 255 (342)
T PRK09489 199 KVLDVGCGAGV----LSAVLARHS---PKIRLTLSDVS------AAALESSRATLAA----NGLEGEVFAS--NVF---- 255 (342)
T ss_pred eEEEeccCcCH----HHHHHHHhC---CCCEEEEEECC------HHHHHHHHHHHHH----cCCCCEEEEc--ccc----
Confidence 69999999996 444555552 45789999964 4556666555543 3555554321 111
Q ss_pred ccccccCCceEEEEeccccccccccccccCCcHHHHHHHHHhcCCCEEEEEEec
Q 004490 564 EDLNIDSGEVLVVNCLYRFRNLLDETVVVDCPRNIVLNLIRKMNPDVFVLGIVN 617 (749)
Q Consensus 564 edL~i~~dE~LaVN~~~~Lh~L~desv~~~spRd~vL~~IR~L~P~Vfv~~e~n 617 (749)
+.+ -.+=++++.|-.| |...+.. .+...+.+-...+.|+|.-.+..+.|
T Consensus 256 ~~~-~~~fDlIvsNPPF--H~g~~~~--~~~~~~~i~~a~~~LkpgG~L~iVan 304 (342)
T PRK09489 256 SDI-KGRFDMIISNPPF--HDGIQTS--LDAAQTLIRGAVRHLNSGGELRIVAN 304 (342)
T ss_pred ccc-CCCccEEEECCCc--cCCcccc--HHHHHHHHHHHHHhcCcCCEEEEEEe
Confidence 111 1223677777665 3332211 01123333344567999865544444
No 56
>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family. This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).
Probab=47.33 E-value=2.2e+02 Score=31.73 Aligned_cols=149 Identities=11% Similarity=0.100 Sum_probs=84.5
Q ss_pred HHHHhhhcCCeeEEEEeccccccchHHHHHHHhcCCCCCCeEEEeeecCCCCCCCChHHHHHHHHHHHHHHHhCCCc-EE
Q 004490 472 TIMNLAEKATRLHIIDFGIMYGFQWPCLIQRLSSRPGGAPKLRITGIDLPQPGFKPAERVEETGRRLAKYAETFKVP-FE 550 (749)
Q Consensus 472 aILeA~~g~~~VHIIDfgI~~G~QWP~Liq~LA~R~gGPP~LRITgI~~p~~gfrpae~leeTGrRL~~~A~~~gVp-Fe 550 (749)
.|..++. ....|||||.|.|..=..||++|..+ +. ..+-.+||+. .+.|+++.++|. .+ ..| .+
T Consensus 69 ~Ia~~i~--~~~~lIELGsG~~~Kt~~LL~aL~~~-~~--~~~Y~plDIS------~~~L~~a~~~L~--~~--~~p~l~ 133 (319)
T TIGR03439 69 DIAASIP--SGSMLVELGSGNLRKVGILLEALERQ-KK--SVDYYALDVS------RSELQRTLAELP--LG--NFSHVR 133 (319)
T ss_pred HHHHhcC--CCCEEEEECCCchHHHHHHHHHHHhc-CC--CceEEEEECC------HHHHHHHHHhhh--hc--cCCCeE
Confidence 3444442 33479999999999999999999732 22 3677999974 577899988887 11 235 77
Q ss_pred EEEcccCcccc-C-cccccccCCceEEEEeccccccccccccccCCcHHHHHHHHHh--cCCC-EEEEEEe--------c
Q 004490 551 FNAIAQKWDTI-Q-IEDLNIDSGEVLVVNCLYRFRNLLDETVVVDCPRNIVLNLIRK--MNPD-VFVLGIV--------N 617 (749)
Q Consensus 551 F~~Ia~~~E~l-~-~edL~i~~dE~LaVN~~~~Lh~L~desv~~~spRd~vL~~IR~--L~P~-Vfv~~e~--------n 617 (749)
+++|....++. . +..-.+...-.++.-.-..+.|+..+ -...||+.|++ |+|. .|+++.- .
T Consensus 134 v~~l~gdy~~~l~~l~~~~~~~~~r~~~flGSsiGNf~~~------ea~~fL~~~~~~~l~~~d~lLiG~D~~k~~~~l~ 207 (319)
T TIGR03439 134 CAGLLGTYDDGLAWLKRPENRSRPTTILWLGSSIGNFSRP------EAAAFLAGFLATALSPSDSFLIGLDGCKDPDKVL 207 (319)
T ss_pred EEEEEecHHHHHhhcccccccCCccEEEEeCccccCCCHH------HHHHHHHHHHHhhCCCCCEEEEecCCCCCHHHHH
Confidence 77775433221 1 00001111122333333344454322 13468999987 8885 5555431 2
Q ss_pred CCCCcCc--hHHHHHHHHHHHHHHHH
Q 004490 618 GAHSAPF--FITRFREALFFYSTLFD 641 (749)
Q Consensus 618 g~~nsp~--F~~RF~EAL~~YSAlFD 641 (749)
..||.+. ......+.|.|--..++
T Consensus 208 ~AY~d~~gvTa~FnlN~L~~~Nr~Lg 233 (319)
T TIGR03439 208 RAYNDPGGVTRRFVLNGLVHANEILG 233 (319)
T ss_pred HHhcCCcchhHHHHHHHHHHHHHHhC
Confidence 3455432 22234556666655554
No 57
>smart00650 rADc Ribosomal RNA adenine dimethylases.
Probab=45.19 E-value=1e+02 Score=30.12 Aligned_cols=42 Identities=24% Similarity=0.352 Sum_probs=28.7
Q ss_pred HHHHHhhhcCCeeEEEEeccccccchHHHHHHHhcCCCCCCeEEEeeecCC
Q 004490 471 KTIMNLAEKATRLHIIDFGIMYGFQWPCLIQRLSSRPGGAPKLRITGIDLP 521 (749)
Q Consensus 471 qaILeA~~g~~~VHIIDfgI~~G~QWP~Liq~LA~R~gGPP~LRITgI~~p 521 (749)
+.|++.+.-...-+|+|+|.|.|. |...|+.+ + -++|+|+..
T Consensus 3 ~~i~~~~~~~~~~~vLEiG~G~G~----lt~~l~~~-~----~~v~~vE~~ 44 (169)
T smart00650 3 DKIVRAANLRPGDTVLEIGPGKGA----LTEELLER-A----ARVTAIEID 44 (169)
T ss_pred HHHHHhcCCCCcCEEEEECCCccH----HHHHHHhc-C----CeEEEEECC
Confidence 345666543444489999999984 55556666 2 389999964
No 58
>PRK06922 hypothetical protein; Provisional
Probab=44.65 E-value=1.5e+02 Score=36.38 Aligned_cols=111 Identities=12% Similarity=0.174 Sum_probs=57.2
Q ss_pred eeEEEEeccccccchHHHHHHHhcCCCCCCeEEEeeecCCCCCCCChHHHHHHHHHHHHHHHhCCCcEEEEEcccCcccc
Q 004490 482 RLHIIDFGIMYGFQWPCLIQRLSSRPGGAPKLRITGIDLPQPGFKPAERVEETGRRLAKYAETFKVPFEFNAIAQKWDTI 561 (749)
Q Consensus 482 ~VHIIDfgI~~G~QWP~Liq~LA~R~gGPP~LRITgI~~p~~gfrpae~leeTGrRL~~~A~~~gVpFeF~~Ia~~~E~l 561 (749)
.-.|+|+|.|.|. ++..|+.+. |..++||||.+ ...++.+.+++ +..+.++++ +.....++
T Consensus 419 g~rVLDIGCGTG~----ls~~LA~~~---P~~kVtGIDIS------~~MLe~Ararl----~~~g~~ie~--I~gDa~dL 479 (677)
T PRK06922 419 GDTIVDVGAGGGV----MLDMIEEET---EDKRIYGIDIS------ENVIDTLKKKK----QNEGRSWNV--IKGDAINL 479 (677)
T ss_pred CCEEEEeCCCCCH----HHHHHHHhC---CCCEEEEEECC------HHHHHHHHHHh----hhcCCCeEE--EEcchHhC
Confidence 3579999999993 445566553 46899999974 34455554443 223455444 22222111
Q ss_pred CcccccccCCceEEEEecccccccccc----cc--ccCCcHHHHHHHHHhcCCCE-EEEE
Q 004490 562 QIEDLNIDSGEVLVVNCLYRFRNLLDE----TV--VVDCPRNIVLNLIRKMNPDV-FVLG 614 (749)
Q Consensus 562 ~~edL~i~~dE~LaVN~~~~Lh~L~de----sv--~~~spRd~vL~~IR~L~P~V-fv~~ 614 (749)
. + .+.++.+=+|-|.+-+|++.+- .. ....+...+-+..|.|+|.- |+++
T Consensus 480 p--~-~fedeSFDvVVsn~vLH~L~syIp~~g~~f~~edl~kiLreI~RVLKPGGrLII~ 536 (677)
T PRK06922 480 S--S-SFEKESVDTIVYSSILHELFSYIEYEGKKFNHEVIKKGLQSAYEVLKPGGRIIIR 536 (677)
T ss_pred c--c-ccCCCCEEEEEEchHHHhhhhhcccccccccHHHHHHHHHHHHHHcCCCcEEEEE
Confidence 1 0 1233444444455667776421 00 01122333334457899974 4443
No 59
>PTZ00338 dimethyladenosine transferase-like protein; Provisional
Probab=44.47 E-value=72 Score=34.89 Aligned_cols=44 Identities=16% Similarity=0.271 Sum_probs=26.7
Q ss_pred HhHHHHH----hhhcCCeeEEEEeccccccchHHHHHHHhcCCCCCCeEEEeeecCC
Q 004490 469 SNKTIMN----LAEKATRLHIIDFGIMYGFQWPCLIQRLSSRPGGAPKLRITGIDLP 521 (749)
Q Consensus 469 ANqaILe----A~~g~~~VHIIDfgI~~G~QWP~Liq~LA~R~gGPP~LRITgI~~p 521 (749)
.|..|++ ++.-...=.|+|+|.|.|. |-..|+.+. -+++||+..
T Consensus 20 ~d~~i~~~Iv~~~~~~~~~~VLEIG~G~G~----LT~~Ll~~~-----~~V~avEiD 67 (294)
T PTZ00338 20 KNPLVLDKIVEKAAIKPTDTVLEIGPGTGN----LTEKLLQLA-----KKVIAIEID 67 (294)
T ss_pred CCHHHHHHHHHhcCCCCcCEEEEecCchHH----HHHHHHHhC-----CcEEEEECC
Confidence 4444444 3333344479999999885 444455442 269999864
No 60
>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated
Probab=44.34 E-value=1.6e+02 Score=29.69 Aligned_cols=44 Identities=32% Similarity=0.413 Sum_probs=27.4
Q ss_pred CCeeEEEEeccccccchHHHHHHHhcCCCCCCeEEEeeecCCCCCCCChHHHHHHHHHH
Q 004490 480 ATRLHIIDFGIMYGFQWPCLIQRLSSRPGGAPKLRITGIDLPQPGFKPAERVEETGRRL 538 (749)
Q Consensus 480 ~~~VHIIDfgI~~G~QWP~Liq~LA~R~gGPP~LRITgI~~p~~gfrpae~leeTGrRL 538 (749)
....+|+|+|.+.|.- ...|+.+ + .++|||+.. ...++.+.+++
T Consensus 62 ~~~~~vLDvGcG~G~~----~~~l~~~--~---~~v~~~D~s------~~~i~~a~~~~ 105 (230)
T PRK07580 62 LTGLRILDAGCGVGSL----SIPLARR--G---AKVVASDIS------PQMVEEARERA 105 (230)
T ss_pred CCCCEEEEEeCCCCHH----HHHHHHc--C---CEEEEEECC------HHHHHHHHHHH
Confidence 3456899999999953 3345543 2 349999963 34455554443
No 61
>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional
Probab=44.34 E-value=2.7e+02 Score=28.73 Aligned_cols=105 Identities=12% Similarity=0.062 Sum_probs=57.1
Q ss_pred eEEEEeccccccchHHHHHHHhcCCCCCCeEEEeeecCCCCCCCChHHHHHHHHHHHHHHHhCCCc-EEEEEcccCcccc
Q 004490 483 LHIIDFGIMYGFQWPCLIQRLSSRPGGAPKLRITGIDLPQPGFKPAERVEETGRRLAKYAETFKVP-FEFNAIAQKWDTI 561 (749)
Q Consensus 483 VHIIDfgI~~G~QWP~Liq~LA~R~gGPP~LRITgI~~p~~gfrpae~leeTGrRL~~~A~~~gVp-FeF~~Ia~~~E~l 561 (749)
-.|+|+|.+.| .--|.+|+.. . -+||+|+.. .+.++.+.+. ++..|+. .+| +...+...
T Consensus 55 ~~vLDl~~GsG---~l~l~~lsr~---a--~~V~~vE~~------~~a~~~a~~N----l~~~~~~~v~~--~~~D~~~~ 114 (199)
T PRK10909 55 ARCLDCFAGSG---ALGLEALSRY---A--AGATLLEMD------RAVAQQLIKN----LATLKAGNARV--VNTNALSF 114 (199)
T ss_pred CEEEEcCCCcc---HHHHHHHHcC---C--CEEEEEECC------HHHHHHHHHH----HHHhCCCcEEE--EEchHHHH
Confidence 47999999998 3334455532 1 389999853 2333333333 3334442 333 22222211
Q ss_pred CcccccccCCceEEEEeccccccccccccccCCcHHHHHHHHHh---cCCCEEEEEEecCCC
Q 004490 562 QIEDLNIDSGEVLVVNCLYRFRNLLDETVVVDCPRNIVLNLIRK---MNPDVFVLGIVNGAH 620 (749)
Q Consensus 562 ~~edL~i~~dE~LaVN~~~~Lh~L~desv~~~spRd~vL~~IR~---L~P~Vfv~~e~ng~~ 620 (749)
-. .. -.+=++|++|=.|+- .-...++..|.. +.|+-+|.++.+...
T Consensus 115 l~-~~-~~~fDlV~~DPPy~~-----------g~~~~~l~~l~~~~~l~~~~iv~ve~~~~~ 163 (199)
T PRK10909 115 LA-QP-GTPHNVVFVDPPFRK-----------GLLEETINLLEDNGWLADEALIYVESEVEN 163 (199)
T ss_pred Hh-hc-CCCceEEEECCCCCC-----------ChHHHHHHHHHHCCCcCCCcEEEEEecCCC
Confidence 00 01 112357788877641 123467788877 699988888876543
No 62
>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed
Probab=43.36 E-value=3.8e+02 Score=27.35 Aligned_cols=97 Identities=15% Similarity=0.246 Sum_probs=51.4
Q ss_pred eeEEEEeccccccchHHHHHHHhcCCCCCCeEEEeeecCCCCCCCChHHHHHHHHHHHHHHHhCCCc-EEEEEcccCccc
Q 004490 482 RLHIIDFGIMYGFQWPCLIQRLSSRPGGAPKLRITGIDLPQPGFKPAERVEETGRRLAKYAETFKVP-FEFNAIAQKWDT 560 (749)
Q Consensus 482 ~VHIIDfgI~~G~QWP~Liq~LA~R~gGPP~LRITgI~~p~~gfrpae~leeTGrRL~~~A~~~gVp-FeF~~Ia~~~E~ 560 (749)
.-.|+|+|.+.|. .++ .++.+. |..++||||.. .+.++.+. +.++..|++ ++|.. ...++
T Consensus 46 g~~VLDiGcGtG~--~al--~la~~~---~~~~V~giD~s------~~~l~~A~----~~~~~~~l~~i~~~~--~d~~~ 106 (187)
T PRK00107 46 GERVLDVGSGAGF--PGI--PLAIAR---PELKVTLVDSL------GKKIAFLR----EVAAELGLKNVTVVH--GRAEE 106 (187)
T ss_pred CCeEEEEcCCCCH--HHH--HHHHHC---CCCeEEEEeCc------HHHHHHHH----HHHHHcCCCCEEEEe--ccHhh
Confidence 4579999999993 222 223221 34699999853 23343333 344455664 44433 23333
Q ss_pred cCcccccccCCceEEEEeccccccccccccccCCcHHHHHHH-HHhcCCCEEEEEE
Q 004490 561 IQIEDLNIDSGEVLVVNCLYRFRNLLDETVVVDCPRNIVLNL-IRKMNPDVFVLGI 615 (749)
Q Consensus 561 l~~edL~i~~dE~LaVN~~~~Lh~L~desv~~~spRd~vL~~-IR~L~P~Vfv~~e 615 (749)
+.. -.+=++++.|+. . +.+.+++. .+.|+|.-.++.+
T Consensus 107 ~~~----~~~fDlV~~~~~-------------~-~~~~~l~~~~~~LkpGG~lv~~ 144 (187)
T PRK00107 107 FGQ----EEKFDVVTSRAV-------------A-SLSDLVELCLPLLKPGGRFLAL 144 (187)
T ss_pred CCC----CCCccEEEEccc-------------c-CHHHHHHHHHHhcCCCeEEEEE
Confidence 322 123346666541 1 23445655 5789998665544
No 63
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=41.94 E-value=85 Score=28.00 Aligned_cols=32 Identities=19% Similarity=0.113 Sum_probs=21.9
Q ss_pred eEEEEeccccccchHHHHHHHhcCCCCCCeEEEeeecCC
Q 004490 483 LHIIDFGIMYGFQWPCLIQRLSSRPGGAPKLRITGIDLP 521 (749)
Q Consensus 483 VHIIDfgI~~G~QWP~Liq~LA~R~gGPP~LRITgI~~p 521 (749)
=+|+|+|.+.|.. ...|+.+. |..++||||..
T Consensus 21 ~~vldlG~G~G~~----~~~l~~~~---~~~~v~~vD~s 52 (124)
T TIGR02469 21 DVLWDIGAGSGSI----TIEAARLV---PNGRVYAIERN 52 (124)
T ss_pred CEEEEeCCCCCHH----HHHHHHHC---CCceEEEEcCC
Confidence 3899999999843 33344442 33789999963
No 64
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=38.98 E-value=2.6e+02 Score=31.72 Aligned_cols=53 Identities=19% Similarity=0.328 Sum_probs=31.9
Q ss_pred HHHHhhhcCCeeEEEEeccccccchHHHHHHHhcCCCCCCeEEEeeecCCCCCCCChHHHHHHHHHH
Q 004490 472 TIMNLAEKATRLHIIDFGIMYGFQWPCLIQRLSSRPGGAPKLRITGIDLPQPGFKPAERVEETGRRL 538 (749)
Q Consensus 472 aILeA~~g~~~VHIIDfgI~~G~QWP~Liq~LA~R~gGPP~LRITgI~~p~~gfrpae~leeTGrRL 538 (749)
.|++.+.-...-+|+|+|.+.|. +...|+++.| .+||||+.. .+.++.+.+++
T Consensus 158 ~l~~~l~l~~g~rVLDIGcG~G~----~a~~la~~~g----~~V~giDlS------~~~l~~A~~~~ 210 (383)
T PRK11705 158 LICRKLQLKPGMRVLDIGCGWGG----LARYAAEHYG----VSVVGVTIS------AEQQKLAQERC 210 (383)
T ss_pred HHHHHhCCCCCCEEEEeCCCccH----HHHHHHHHCC----CEEEEEeCC------HHHHHHHHHHh
Confidence 34444433344589999998774 4455665543 489999863 34455444443
No 65
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=37.88 E-value=1.2e+02 Score=32.22 Aligned_cols=70 Identities=17% Similarity=0.338 Sum_probs=36.7
Q ss_pred HHHHHHHHHHhhhCCccchhhHhHhHHHHHhhhcCCeeEEEEeccccccchHHHHHHHhcCCCCCCeEEEeeecCC
Q 004490 446 ADVLKAYHLFLAACPFRKLSNFFSNKTIMNLAEKATRLHIIDFGIMYGFQWPCLIQRLSSRPGGAPKLRITGIDLP 521 (749)
Q Consensus 446 ~e~lkAy~~f~~~~Pf~kfa~ftANqaILeA~~g~~~VHIIDfgI~~G~QWP~Liq~LA~R~gGPP~LRITgI~~p 521 (749)
.++++|.+.|.+.-=|..+....+ ..|.+.+ ....-+|+|+|.|.|.--..|.+.+... ....|+|||..
T Consensus 52 ~~~~~ar~~fl~~g~y~~l~~~i~-~~l~~~l-~~~~~~vLDiGcG~G~~~~~l~~~~~~~----~~~~v~giD~s 121 (272)
T PRK11088 52 KEMMQARRAFLDAGHYQPLRDAVA-NLLAERL-DEKATALLDIGCGEGYYTHALADALPEI----TTMQLFGLDIS 121 (272)
T ss_pred HHHHHHHHHHHHCCChHHHHHHHH-HHHHHhc-CCCCCeEEEECCcCCHHHHHHHHhcccc----cCCeEEEECCC
Confidence 456666666655432222222211 1222222 2344679999999996444444433221 12579999963
No 66
>COG1341 Predicted GTPase or GTP-binding protein [General function prediction only]
Probab=36.97 E-value=2.9e+02 Score=31.96 Aligned_cols=154 Identities=18% Similarity=0.182 Sum_probs=85.3
Q ss_pred HhHhHHHHHhhhcCCeeEEEEeccccc-cchHHHHHHHh--------cCCCCCCeEEEeeecCCCCCCCChHHHHHHHHH
Q 004490 467 FFSNKTIMNLAEKATRLHIIDFGIMYG-FQWPCLIQRLS--------SRPGGAPKLRITGIDLPQPGFKPAERVEETGRR 537 (749)
Q Consensus 467 ftANqaILeA~~g~~~VHIIDfgI~~G-~QWP~Liq~LA--------~R~gGPP~LRITgI~~p~~gfrpae~leeTGrR 537 (749)
+.||.. ++.-.+|-|||.|+++- .-=|..|- |+ -+...|++...-|.-.|+. .+...+ .--.|
T Consensus 92 ~LaN~~----l~rG~~v~iiDaDvGQ~ei~pPg~IS-L~~~~s~~~~L~~l~~~~~~FvG~isP~~--~~~~~i-~~v~r 163 (398)
T COG1341 92 YLANKL----LARGRKVAIIDADVGQSEIGPPGFIS-LAFPESPVISLSELEPFTLYFVGSISPQG--FPGRYI-AGVAR 163 (398)
T ss_pred HHHHHH----hhcCceEEEEeCCCCCcccCCCceEE-eecccCCCCCHHHcCccceEEEeccCCCC--ChHHHH-HHHHH
Confidence 455543 33345699999998853 22222221 11 1223566777777666665 233333 34478
Q ss_pred HHHHHHhCCCcEEEEEcccCccccCcccccccCCceEEEEeccccccccccccccCCcHHHHHHHHHhcCCCEEEEEEec
Q 004490 538 LAKYAETFKVPFEFNAIAQKWDTIQIEDLNIDSGEVLVVNCLYRFRNLLDETVVVDCPRNIVLNLIRKMNPDVFVLGIVN 617 (749)
Q Consensus 538 L~~~A~~~gVpFeF~~Ia~~~E~l~~edL~i~~dE~LaVN~~~~Lh~L~desv~~~spRd~vL~~IR~L~P~Vfv~~e~n 617 (749)
|.++|++. -++++||+.=..+ --...+--..+|+..+|++++..+.+
T Consensus 164 L~~~a~~~-------------------------~~~ilIdT~GWi~--------G~~g~elk~~li~~ikP~~Ii~l~~~ 210 (398)
T COG1341 164 LVDLAKKE-------------------------ADFILIDTDGWIK--------GWGGLELKRALIDAIKPDLIIALERA 210 (398)
T ss_pred HHHHhhcc-------------------------CCEEEEcCCCcee--------CchHHHHHHHHHhhcCCCEEEEeccc
Confidence 88888754 1255666642211 11335556678899999998876554
Q ss_pred CCCCcCchHHHHHHHHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHHhH
Q 004490 618 GAHSAPFFITRFREALFFYSTLFDMLETNVPREIPERMLIEREIFGREAMN 668 (749)
Q Consensus 618 g~~nsp~F~~RF~EAL~~YSAlFDsLda~~pr~~~eR~~iEr~~fgreI~N 668 (749)
.. ..++-+=.+...| ....|+..++.-++|..+=.+-+.|.+.+
T Consensus 211 ~~---~~~l~~~~~~~~~----~~~~~~~~~~sR~ER~~~R~e~~~ryf~~ 254 (398)
T COG1341 211 NE---LSPLLEGVESIVY----LKVPDAVAPRSREERKELREEKYRRYFEG 254 (398)
T ss_pred cc---cchhhhcccCceE----EeccccccccChhHHHHHHHHHHHHhccC
Confidence 32 2223333344433 33345566777677766544456777665
No 67
>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes.
Probab=36.37 E-value=2.1e+02 Score=28.97 Aligned_cols=98 Identities=18% Similarity=0.302 Sum_probs=49.6
Q ss_pred EEEEeccccccchHHHHHHHhcCCCCCCeEEEeeecCCCCCCCChHHHHHHHHHHHHHHHhCCCcEEEEEcccCccccCc
Q 004490 484 HIIDFGIMYGFQWPCLIQRLSSRPGGAPKLRITGIDLPQPGFKPAERVEETGRRLAKYAETFKVPFEFNAIAQKWDTIQI 563 (749)
Q Consensus 484 HIIDfgI~~G~QWP~Liq~LA~R~gGPP~LRITgI~~p~~gfrpae~leeTGrRL~~~A~~~gVpFeF~~Ia~~~E~l~~ 563 (749)
+|+|+|.+.|. ++..|+.+- |..++|||++. .+.++...+++ +..|+.-....+....+....
T Consensus 2 ~vLDiGcG~G~----~~~~la~~~---~~~~v~gid~s------~~~~~~a~~~~----~~~gl~~~i~~~~~d~~~~~~ 64 (224)
T smart00828 2 RVLDFGCGYGS----DLIDLAERH---PHLQLHGYTIS------PEQAEVGRERI----RALGLQGRIRIFYRDSAKDPF 64 (224)
T ss_pred eEEEECCCCCH----HHHHHHHHC---CCCEEEEEECC------HHHHHHHHHHH----HhcCCCcceEEEecccccCCC
Confidence 68999999884 344555543 34689999963 34444444443 333443322222222211111
Q ss_pred ccccccCCceEEEEeccccccccccccccCCcHHHHHHHH-HhcCCCEEE
Q 004490 564 EDLNIDSGEVLVVNCLYRFRNLLDETVVVDCPRNIVLNLI-RKMNPDVFV 612 (749)
Q Consensus 564 edL~i~~dE~LaVN~~~~Lh~L~desv~~~spRd~vL~~I-R~L~P~Vfv 612 (749)
. ..=++ |-+...++|+.+ ...+|+.+ +-|+|.-.+
T Consensus 65 ~----~~fD~--I~~~~~l~~~~~--------~~~~l~~~~~~LkpgG~l 100 (224)
T smart00828 65 P----DTYDL--VFGFEVIHHIKD--------KMDLFSNISRHLKDGGHL 100 (224)
T ss_pred C----CCCCE--eehHHHHHhCCC--------HHHHHHHHHHHcCCCCEE
Confidence 1 11122 224445566632 34566666 569998443
No 68
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=35.59 E-value=60 Score=33.62 Aligned_cols=53 Identities=23% Similarity=0.431 Sum_probs=36.4
Q ss_pred HHhhhcCCeeEEEEeccccc---cchHHHHHHHhcCCCCCCeEEEeeecCCCCCCCChHHHHHHHHHHHHHH
Q 004490 474 MNLAEKATRLHIIDFGIMYG---FQWPCLIQRLSSRPGGAPKLRITGIDLPQPGFKPAERVEETGRRLAKYA 542 (749)
Q Consensus 474 LeA~~g~~~VHIIDfgI~~G---~QWP~Liq~LA~R~gGPP~LRITgI~~p~~gfrpae~leeTGrRL~~~A 542 (749)
|-+++=.+.=|++|+|-+-| .+|. ++ .|..|+++|+ +..++++-|.+++.+|.
T Consensus 27 ls~L~~~~g~~l~DIGaGtGsi~iE~a-~~---------~p~~~v~AIe------~~~~a~~~~~~N~~~fg 82 (187)
T COG2242 27 LSKLRPRPGDRLWDIGAGTGSITIEWA-LA---------GPSGRVIAIE------RDEEALELIERNAARFG 82 (187)
T ss_pred HHhhCCCCCCEEEEeCCCccHHHHHHH-Hh---------CCCceEEEEe------cCHHHHHHHHHHHHHhC
Confidence 44444445559999999987 4665 22 2788999998 44667777777766554
No 69
>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.
Probab=34.33 E-value=1.9e+02 Score=29.53 Aligned_cols=79 Identities=22% Similarity=0.368 Sum_probs=42.5
Q ss_pred CeeEEEEeccccccchHHHHHHHhcCCCCCCeEEEeeecCCCCCCCChHHHHHHHHHHHHHHHhCCCc-EEEEEcccCcc
Q 004490 481 TRLHIIDFGIMYGFQWPCLIQRLSSRPGGAPKLRITGIDLPQPGFKPAERVEETGRRLAKYAETFKVP-FEFNAIAQKWD 559 (749)
Q Consensus 481 ~~VHIIDfgI~~G~QWP~Liq~LA~R~gGPP~LRITgI~~p~~gfrpae~leeTGrRL~~~A~~~gVp-FeF~~Ia~~~E 559 (749)
...+|+|+|.|.| .+...|+.+. |..++|||+.. ...++.+.+ .++..+++ .+| +...+.
T Consensus 87 ~~~~ilDig~G~G----~~~~~l~~~~---~~~~v~~iD~~------~~~~~~a~~----~~~~~~~~~~~~--~~~d~~ 147 (251)
T TIGR03534 87 GPLRVLDLGTGSG----AIALALAKER---PDARVTAVDIS------PEALAVARK----NAARLGLDNVTF--LQSDWF 147 (251)
T ss_pred CCCeEEEEeCcHh----HHHHHHHHHC---CCCEEEEEECC------HHHHHHHHH----HHHHcCCCeEEE--EECchh
Confidence 3468999999999 3444444432 45699999953 333443333 33445665 333 222332
Q ss_pred ccCcccccccCCceEEEEecccc
Q 004490 560 TIQIEDLNIDSGEVLVVNCLYRF 582 (749)
Q Consensus 560 ~l~~edL~i~~dE~LaVN~~~~L 582 (749)
+ .+.-.+=++|+.|-.|..
T Consensus 148 ~----~~~~~~fD~Vi~npPy~~ 166 (251)
T TIGR03534 148 E----PLPGGKFDLIVSNPPYIP 166 (251)
T ss_pred c----cCcCCceeEEEECCCCCc
Confidence 1 111123357777776653
No 70
>PRK04148 hypothetical protein; Provisional
Probab=32.98 E-value=2.5e+02 Score=27.55 Aligned_cols=41 Identities=27% Similarity=0.498 Sum_probs=26.3
Q ss_pred HHHhhhcCCeeEEEEeccccccchHHHHHHHhcCCCCCCeEEEeeecCC
Q 004490 473 IMNLAEKATRLHIIDFGIMYGFQWPCLIQRLSSRPGGAPKLRITGIDLP 521 (749)
Q Consensus 473 ILeA~~g~~~VHIIDfgI~~G~QWP~Liq~LA~R~gGPP~LRITgI~~p 521 (749)
|.+.....+...|+|.|+|+|+. +-+.|++. | ..+|+||..
T Consensus 8 l~~~~~~~~~~kileIG~GfG~~---vA~~L~~~-G----~~ViaIDi~ 48 (134)
T PRK04148 8 IAENYEKGKNKKIVELGIGFYFK---VAKKLKES-G----FDVIVIDIN 48 (134)
T ss_pred HHHhcccccCCEEEEEEecCCHH---HHHHHHHC-C----CEEEEEECC
Confidence 44444444456799999998853 44455533 2 488999863
No 71
>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]
Probab=32.21 E-value=1.7e+02 Score=31.60 Aligned_cols=112 Identities=21% Similarity=0.321 Sum_probs=67.9
Q ss_pred hhcCCeeEEEEeccccccchHHHHHHHhcCCCCCCeEEEeeecCCCCCCCChHHHHHHHHHHHHHHHhCCCcEEEEEccc
Q 004490 477 AEKATRLHIIDFGIMYGFQWPCLIQRLSSRPGGAPKLRITGIDLPQPGFKPAERVEETGRRLAKYAETFKVPFEFNAIAQ 556 (749)
Q Consensus 477 ~~g~~~VHIIDfgI~~G~QWP~Liq~LA~R~gGPP~LRITgI~~p~~gfrpae~leeTGrRL~~~A~~~gVpFeF~~Ia~ 556 (749)
+.-+.--.|+|+|.|-|-+=- -|+.|= |--.|||||. ..+.|+++.+||- ++.|+---| .
T Consensus 26 Vp~~~~~~v~DLGCGpGnsTe----lL~~Rw---P~A~i~GiDs------S~~Mla~Aa~rlp------~~~f~~aDl-~ 85 (257)
T COG4106 26 VPLERPRRVVDLGCGPGNSTE----LLARRW---PDAVITGIDS------SPAMLAKAAQRLP------DATFEEADL-R 85 (257)
T ss_pred CCccccceeeecCCCCCHHHH----HHHHhC---CCCeEeeccC------CHHHHHHHHHhCC------CCceecccH-h
Confidence 334555679999999996544 455554 4568999985 3565666555542 333432111 1
Q ss_pred CccccCcccccccCCceEEEEeccccccccccccccCCcHHHHHHHHHhcCCCEEEEEEecCCCCcCc
Q 004490 557 KWDTIQIEDLNIDSGEVLVVNCLYRFRNLLDETVVVDCPRNIVLNLIRKMNPDVFVLGIVNGAHSAPF 624 (749)
Q Consensus 557 ~~E~l~~edL~i~~dE~LaVN~~~~Lh~L~desv~~~spRd~vL~~IR~L~P~Vfv~~e~ng~~nsp~ 624 (749)
.|.-- .+-.+|.-|..|+ -|.|. -+.+-+++-.|.|.-++-+-+-.++..|.
T Consensus 86 ~w~p~-------~~~dllfaNAvlq--WlpdH-------~~ll~rL~~~L~Pgg~LAVQmPdN~deps 137 (257)
T COG4106 86 TWKPE-------QPTDLLFANAVLQ--WLPDH-------PELLPRLVSQLAPGGVLAVQMPDNLDEPS 137 (257)
T ss_pred hcCCC-------Cccchhhhhhhhh--hcccc-------HHHHHHHHHhhCCCceEEEECCCccCchh
Confidence 23211 1224566677654 56653 24566888999999888777777777664
No 72
>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....
Probab=30.59 E-value=1.9e+02 Score=28.41 Aligned_cols=117 Identities=18% Similarity=0.277 Sum_probs=60.3
Q ss_pred hHhHHHHHhhhcCCeeEEEEeccccccchHHHHHHHhcCCCCCCeEEEeeecCCCCCCCChHHHHHHHHHHHHHHHhCCC
Q 004490 468 FSNKTIMNLAEKATRLHIIDFGIMYGFQWPCLIQRLSSRPGGAPKLRITGIDLPQPGFKPAERVEETGRRLAKYAETFKV 547 (749)
Q Consensus 468 tANqaILeA~~g~~~VHIIDfgI~~G~QWP~Liq~LA~R~gGPP~LRITgI~~p~~gfrpae~leeTGrRL~~~A~~~gV 547 (749)
.+-..+++.+.....=+|+|+|.|.|.- =-.|+.+. |..+||++|.. ...++-+.+. ++..++
T Consensus 18 ~~t~lL~~~l~~~~~~~vLDlG~G~G~i----~~~la~~~---~~~~v~~vDi~------~~a~~~a~~n----~~~n~~ 80 (170)
T PF05175_consen 18 AGTRLLLDNLPKHKGGRVLDLGCGSGVI----SLALAKRG---PDAKVTAVDIN------PDALELAKRN----AERNGL 80 (170)
T ss_dssp HHHHHHHHHHHHHTTCEEEEETSTTSHH----HHHHHHTS---TCEEEEEEESB------HHHHHHHHHH----HHHTTC
T ss_pred HHHHHHHHHHhhccCCeEEEecCChHHH----HHHHHHhC---CCCEEEEEcCC------HHHHHHHHHH----HHhcCc
Confidence 4556778887766777899999999932 22344442 57889999963 3334333333 445566
Q ss_pred c-EEEEEcccC-ccccCcccccccCCceEEEEeccccccccccccccCCcHHHHHHHHHhcCCCEEE
Q 004490 548 P-FEFNAIAQK-WDTIQIEDLNIDSGEVLVVNCLYRFRNLLDETVVVDCPRNIVLNLIRKMNPDVFV 612 (749)
Q Consensus 548 p-FeF~~Ia~~-~E~l~~edL~i~~dE~LaVN~~~~Lh~L~desv~~~spRd~vL~~IR~L~P~Vfv 612 (749)
. .++ +... .+.+. -.+=++++.|=.+. .-.++.. +--++.+-..-+-|+|.-.+
T Consensus 81 ~~v~~--~~~d~~~~~~-----~~~fD~Iv~NPP~~--~~~~~~~--~~~~~~i~~a~~~Lk~~G~l 136 (170)
T PF05175_consen 81 ENVEV--VQSDLFEALP-----DGKFDLIVSNPPFH--AGGDDGL--DLLRDFIEQARRYLKPGGRL 136 (170)
T ss_dssp TTEEE--EESSTTTTCC-----TTCEEEEEE---SB--TTSHCHH--HHHHHHHHHHHHHEEEEEEE
T ss_pred ccccc--cccccccccc-----ccceeEEEEccchh--cccccch--hhHHHHHHHHHHhccCCCEE
Confidence 5 443 3222 22222 11224777776632 2222110 01123333445679998644
No 73
>PF13552 DUF4127: Protein of unknown function (DUF4127)
Probab=30.44 E-value=90 Score=36.73 Aligned_cols=69 Identities=23% Similarity=0.326 Sum_probs=47.9
Q ss_pred ccccccccccccCCcHHHHHHHHHhcCCCEEE--E-EEe-----cCCCCcCchHHHHHHHHHHHHHHHHHhhhcCCCCCH
Q 004490 581 RFRNLLDETVVVDCPRNIVLNLIRKMNPDVFV--L-GIV-----NGAHSAPFFITRFREALFFYSTLFDMLETNVPREIP 652 (749)
Q Consensus 581 ~Lh~L~desv~~~spRd~vL~~IR~L~P~Vfv--~-~e~-----ng~~nsp~F~~RF~EAL~~YSAlFDsLda~~pr~~~ 652 (749)
|.|++..+.+ --|-.+|+.+|+.+|++=| + +++ +++...|..-..+...++.|+.+.|-.+...+.+..
T Consensus 78 R~~~~~~~~~---~~rl~~l~~lk~~~p~~~iyaf~~ImR~~~~~~~~eep~yy~~yg~~i~~~~~l~dk~~~~~~~e~~ 154 (497)
T PF13552_consen 78 RIHHLSLEEA---LERLERLRELKARNPNLPIYAFSTIMRTPPYSSSDEEPDYYADYGRKIFRYSQLLDKEEGLSEEERK 154 (497)
T ss_pred cCCCCCHHHH---HHHHHHHHHHHHHCCCCeEEEEEEEeccCCCCCCCCCcHHHHHHHHHHHHHHHhhhhhhhcchhhHH
Confidence 6677655432 2366789999999998533 2 222 345567888899999999999999998843333333
No 74
>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional
Probab=30.13 E-value=2e+02 Score=30.41 Aligned_cols=46 Identities=17% Similarity=0.336 Sum_probs=29.7
Q ss_pred HhHhHHHHHhhh----cCCeeEEEEeccccccchHHHHHHHhcCCCCCCeEEEeeecCC
Q 004490 467 FFSNKTIMNLAE----KATRLHIIDFGIMYGFQWPCLIQRLSSRPGGAPKLRITGIDLP 521 (749)
Q Consensus 467 ftANqaILeA~~----g~~~VHIIDfgI~~G~QWP~Liq~LA~R~gGPP~LRITgI~~p 521 (749)
|..++.|++.+. -.+.=+|+|+|.|.|. |...|+.+. .++|||+..
T Consensus 11 fl~d~~~~~~iv~~~~~~~~~~VLEIG~G~G~----lt~~L~~~~-----~~v~~vEid 60 (258)
T PRK14896 11 FLIDDRVVDRIVEYAEDTDGDPVLEIGPGKGA----LTDELAKRA-----KKVYAIELD 60 (258)
T ss_pred ccCCHHHHHHHHHhcCCCCcCeEEEEeCccCH----HHHHHHHhC-----CEEEEEECC
Confidence 445555555443 2344579999999994 555566662 279999964
No 75
>TIGR00755 ksgA dimethyladenosine transferase. Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase
Probab=29.93 E-value=3.9e+02 Score=28.02 Aligned_cols=41 Identities=22% Similarity=0.339 Sum_probs=27.6
Q ss_pred HHHHhhhcCCeeEEEEeccccccchHHHHHHHhcCCCCCCeEEEeeecCC
Q 004490 472 TIMNLAEKATRLHIIDFGIMYGFQWPCLIQRLSSRPGGAPKLRITGIDLP 521 (749)
Q Consensus 472 aILeA~~g~~~VHIIDfgI~~G~QWP~Liq~LA~R~gGPP~LRITgI~~p 521 (749)
.|++++...+.=.|+|+|.|.|. |...|+.+. + ++++|+..
T Consensus 20 ~i~~~~~~~~~~~VLEiG~G~G~----lt~~L~~~~--~---~v~~iE~d 60 (253)
T TIGR00755 20 KIVEAANVLEGDVVLEIGPGLGA----LTEPLLKRA--K---KVTAIEID 60 (253)
T ss_pred HHHHhcCCCCcCEEEEeCCCCCH----HHHHHHHhC--C---cEEEEECC
Confidence 34444444455689999999996 666666653 2 39999853
No 76
>KOG4300 consensus Predicted methyltransferase [General function prediction only]
Probab=29.38 E-value=7.5e+02 Score=26.71 Aligned_cols=124 Identities=22% Similarity=0.288 Sum_probs=66.2
Q ss_pred HhhhcCCeeEEEEeccccccchHHHHHHHhcCCCCC--CeEEEeeecCCCCCCCChHHHHHHHHHHHHHHHhCCCcEEEE
Q 004490 475 NLAEKATRLHIIDFGIMYGFQWPCLIQRLSSRPGGA--PKLRITGIDLPQPGFKPAERVEETGRRLAKYAETFKVPFEFN 552 (749)
Q Consensus 475 eA~~g~~~VHIIDfgI~~G~QWP~Liq~LA~R~gGP--P~LRITgI~~p~~gfrpae~leeTGrRL~~~A~~~gVpFeF~ 552 (749)
.-+....++-+...|++-|--.+- -| |-.|||+|| |.+.+++..+. .+|+.--..|++-
T Consensus 70 ~~~gk~~K~~vLEvgcGtG~Nfkf----------y~~~p~~svt~lD-------pn~~mee~~~k--s~~E~k~~~~~~f 130 (252)
T KOG4300|consen 70 YFLGKSGKGDVLEVGCGTGANFKF----------YPWKPINSVTCLD-------PNEKMEEIADK--SAAEKKPLQVERF 130 (252)
T ss_pred HHhcccCccceEEecccCCCCccc----------ccCCCCceEEEeC-------CcHHHHHHHHH--HHhhccCcceEEE
Confidence 344456789999999998832211 23 678999998 35667766543 3344433334433
Q ss_pred EcccCccccCcccccccCCceEEEEeccccccccccccccCCcHHHHHHHHHh-cCCCEEEEEEecCCCCcCchHHHHHH
Q 004490 553 AIAQKWDTIQIEDLNIDSGEVLVVNCLYRFRNLLDETVVVDCPRNIVLNLIRK-MNPDVFVLGIVNGAHSAPFFITRFRE 631 (749)
Q Consensus 553 ~Ia~~~E~l~~edL~i~~dE~LaVN~~~~Lh~L~desv~~~spRd~vL~~IR~-L~P~Vfv~~e~ng~~nsp~F~~RF~E 631 (749)
.++ ..|++. .+..+-+=+|-|.|.|=. +.+|+. .|+.+|+ |+|+-.++-+..+.--- .|..|+..
T Consensus 131 vva-~ge~l~----~l~d~s~DtVV~TlvLCS-------ve~~~k-~L~e~~rlLRpgG~iifiEHva~~y-~~~n~i~q 196 (252)
T KOG4300|consen 131 VVA-DGENLP----QLADGSYDTVVCTLVLCS-------VEDPVK-QLNEVRRLLRPGGRIIFIEHVAGEY-GFWNRILQ 196 (252)
T ss_pred Eee-chhcCc----ccccCCeeeEEEEEEEec-------cCCHHH-HHHHHHHhcCCCcEEEEEecccccc-hHHHHHHH
Confidence 333 444443 122233334445444321 345665 6666655 89996655555443221 24555543
No 77
>TIGR03183 DNA_S_dndC putative sulfurtransferase DndC. Members of this protein family are the DndC protein from the dnd (degradation during electrophoresis) operon. The dnd phenotype reflects a sulfur-containing modification to DNA. This operon is sparsely and sporadically distributed among bactera; among the first eight examples are members from the Actinobacteria, Firmicutes, Gammaproteobacteria, Cyanobacteria. DndC is suggested to be a sulfurtransferase.
Probab=29.17 E-value=1.5e+02 Score=34.70 Aligned_cols=81 Identities=15% Similarity=0.130 Sum_probs=49.8
Q ss_pred HHHHHhhhcCCeeEEEEeccccccchH--HHHHHHhcC--CCCCCeEEE----eeecCCCCCCCChHHHHHHHHHHHHHH
Q 004490 471 KTIMNLAEKATRLHIIDFGIMYGFQWP--CLIQRLSSR--PGGAPKLRI----TGIDLPQPGFKPAERVEETGRRLAKYA 542 (749)
Q Consensus 471 qaILeA~~g~~~VHIIDfgI~~G~QWP--~Liq~LA~R--~gGPP~LRI----TgI~~p~~gfrpae~leeTGrRL~~~A 542 (749)
.+|-++.....+-+||=|.-|---.=. -...+|... .+..+.+.| ||++.|.. .+.++.+-+++.++|
T Consensus 3 ~~i~~~y~~~~~p~vV~fSGGKDSta~L~Lv~~Al~~lp~e~~~k~v~VI~~DTgvE~Pe~----~~~v~~~l~~i~~~a 78 (447)
T TIGR03183 3 EEIQELYLSDDIPWVVGYSGGKDSTAVLQLIWNALAALPAEQRTKKIHVISTDTLVENPIV----AAWVNASLERMQEAA 78 (447)
T ss_pred HHHHHHHHhcCCceEEEeCCCHHHHHHHHHHHHHHHhccccccCcceEEEECcCCCccHHH----HHHHHHHHHHHHHHH
Confidence 345555555566677777654211100 011233321 122356777 77877643 567888899999999
Q ss_pred HhCCCcEEEEEcc
Q 004490 543 ETFKVPFEFNAIA 555 (749)
Q Consensus 543 ~~~gVpFeF~~Ia 555 (749)
++.|+||..+.+.
T Consensus 79 ~~~~lpi~~~~v~ 91 (447)
T TIGR03183 79 QDQGLPIEPHRLT 91 (447)
T ss_pred HHcCCCeEEEecC
Confidence 9999999998774
No 78
>PRK14968 putative methyltransferase; Provisional
Probab=27.99 E-value=5.6e+02 Score=24.73 Aligned_cols=43 Identities=16% Similarity=0.265 Sum_probs=28.5
Q ss_pred CeeEEEEeccccccchHHHHHHHhcCCCCCCeEEEeeecCCCCCCCChHHHHHHHHHH
Q 004490 481 TRLHIIDFGIMYGFQWPCLIQRLSSRPGGAPKLRITGIDLPQPGFKPAERVEETGRRL 538 (749)
Q Consensus 481 ~~VHIIDfgI~~G~QWP~Liq~LA~R~gGPP~LRITgI~~p~~gfrpae~leeTGrRL 538 (749)
+.-.|+|+|.+.|. +...|+.+ + .+||||+.. .+.++.+.+++
T Consensus 23 ~~~~vLd~G~G~G~----~~~~l~~~-~----~~v~~~D~s------~~~~~~a~~~~ 65 (188)
T PRK14968 23 KGDRVLEVGTGSGI----VAIVAAKN-G----KKVVGVDIN------PYAVECAKCNA 65 (188)
T ss_pred CCCEEEEEccccCH----HHHHHHhh-c----ceEEEEECC------HHHHHHHHHHH
Confidence 34469999999997 45556655 2 589999953 34455554444
No 79
>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase. This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.
Probab=27.14 E-value=6.5e+02 Score=25.25 Aligned_cols=100 Identities=18% Similarity=0.275 Sum_probs=49.4
Q ss_pred CeeEEEEeccccccchHHHHHHHhcCCCCCCeEEEeeecCCCCCCCChHHHHHHHHHHHHHHHhCCC-cEEEEEcccCcc
Q 004490 481 TRLHIIDFGIMYGFQWPCLIQRLSSRPGGAPKLRITGIDLPQPGFKPAERVEETGRRLAKYAETFKV-PFEFNAIAQKWD 559 (749)
Q Consensus 481 ~~VHIIDfgI~~G~QWP~Liq~LA~R~gGPP~LRITgI~~p~~gfrpae~leeTGrRL~~~A~~~gV-pFeF~~Ia~~~E 559 (749)
....|+|+|.+.|. +...|+.. + .++|+|+.. ...++...+++. ..++ .+.|... ..+
T Consensus 45 ~~~~vLdlG~G~G~----~~~~l~~~--~---~~v~~iD~s------~~~~~~a~~~~~----~~~~~~~~~~~~--d~~ 103 (224)
T TIGR01983 45 FGLRVLDVGCGGGL----LSEPLARL--G---ANVTGIDAS------EENIEVAKLHAK----KDPLLKIEYRCT--SVE 103 (224)
T ss_pred CCCeEEEECCCCCH----HHHHHHhc--C---CeEEEEeCC------HHHHHHHHHHHH----HcCCCceEEEeC--CHH
Confidence 36789999999884 33344443 2 249999863 334444444433 2344 3444332 222
Q ss_pred ccCcccccccCCceEEEEeccccccccccccccCCcHHHHHHH-HHhcCCCEEEE
Q 004490 560 TIQIEDLNIDSGEVLVVNCLYRFRNLLDETVVVDCPRNIVLNL-IRKMNPDVFVL 613 (749)
Q Consensus 560 ~l~~edL~i~~dE~LaVN~~~~Lh~L~desv~~~spRd~vL~~-IR~L~P~Vfv~ 613 (749)
++.... -.+-.+++.+ ..++|.. +|. .+|.. .+.|+|.-+++
T Consensus 104 ~~~~~~--~~~~D~i~~~--~~l~~~~-------~~~-~~l~~~~~~L~~gG~l~ 146 (224)
T TIGR01983 104 DLAEKG--AKSFDVVTCM--EVLEHVP-------DPQ-AFIRACAQLLKPGGILF 146 (224)
T ss_pred HhhcCC--CCCccEEEeh--hHHHhCC-------CHH-HHHHHHHHhcCCCcEEE
Confidence 221111 0122344433 3445543 344 45554 46789986544
No 80
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=26.25 E-value=6.4e+02 Score=25.56 Aligned_cols=34 Identities=15% Similarity=0.231 Sum_probs=23.7
Q ss_pred CeeEEEEeccccccchHHHHHHHhcCCCCCCeEEEeeecCC
Q 004490 481 TRLHIIDFGIMYGFQWPCLIQRLSSRPGGAPKLRITGIDLP 521 (749)
Q Consensus 481 ~~VHIIDfgI~~G~QWP~Liq~LA~R~gGPP~LRITgI~~p 521 (749)
..-.|+|+|.+.|.-...|.+ +. |..+|||||..
T Consensus 40 ~~~~VLDiGcGtG~~~~~la~----~~---p~~~v~gVD~s 73 (202)
T PRK00121 40 DAPIHLEIGFGKGEFLVEMAK----AN---PDINFIGIEVH 73 (202)
T ss_pred CCCeEEEEccCCCHHHHHHHH----HC---CCccEEEEEec
Confidence 456799999999965544433 32 34689999963
No 81
>TIGR00406 prmA ribosomal protein L11 methyltransferase. Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.
Probab=25.77 E-value=7e+02 Score=26.87 Aligned_cols=66 Identities=23% Similarity=0.266 Sum_probs=37.6
Q ss_pred hHhHHHHHhhhc--CCeeEEEEeccccccchHHHHHHHhcCCCCCCeEEEeeecCCCCCCCChHHHHHHHHHHHHHHHhC
Q 004490 468 FSNKTIMNLAEK--ATRLHIIDFGIMYGFQWPCLIQRLSSRPGGAPKLRITGIDLPQPGFKPAERVEETGRRLAKYAETF 545 (749)
Q Consensus 468 tANqaILeA~~g--~~~VHIIDfgI~~G~QWP~Liq~LA~R~gGPP~LRITgI~~p~~gfrpae~leeTGrRL~~~A~~~ 545 (749)
.+.+..+++++. ...-.|+|+|.|.|. |...++.+ | + -+++|||.. ...++.+.+++ +..
T Consensus 144 ~tt~l~l~~l~~~~~~g~~VLDvGcGsG~----lai~aa~~-g-~--~~V~avDid------~~al~~a~~n~----~~n 205 (288)
T TIGR00406 144 PTTSLCLEWLEDLDLKDKNVIDVGCGSGI----LSIAALKL-G-A--AKVVGIDID------PLAVESARKNA----ELN 205 (288)
T ss_pred HHHHHHHHHHHhhcCCCCEEEEeCCChhH----HHHHHHHc-C-C--CeEEEEECC------HHHHHHHHHHH----HHc
Confidence 444555555542 234589999999984 33445543 2 2 389999963 34555555443 334
Q ss_pred CCcEEE
Q 004490 546 KVPFEF 551 (749)
Q Consensus 546 gVpFeF 551 (749)
++...+
T Consensus 206 ~~~~~~ 211 (288)
T TIGR00406 206 QVSDRL 211 (288)
T ss_pred CCCcce
Confidence 554333
No 82
>KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism]
Probab=25.11 E-value=1.5e+02 Score=32.50 Aligned_cols=100 Identities=29% Similarity=0.487 Sum_probs=59.3
Q ss_pred EEEeccccccchHHHHHHHhcCCCCCCeEEEeeecCCCCCCCChHHHHHHHHHHHHHHHhCCCcEEEEEccc--CccccC
Q 004490 485 IIDFGIMYGFQWPCLIQRLSSRPGGAPKLRITGIDLPQPGFKPAERVEETGRRLAKYAETFKVPFEFNAIAQ--KWDTIQ 562 (749)
Q Consensus 485 IIDfgI~~G~QWP~Liq~LA~R~gGPP~LRITgI~~p~~gfrpae~leeTGrRL~~~A~~~gVpFeF~~Ia~--~~E~l~ 562 (749)
|+|+|.|-|. |=+-|| |.| --|||||.. .+.++.+... + ++. |..=.+|+- ..|+.+
T Consensus 93 ilDvGCGgGL----LSepLA-rlg----a~V~GID~s------~~~V~vA~~h-~----~~d-P~~~~~~~y~l~~~~~~ 151 (282)
T KOG1270|consen 93 ILDVGCGGGL----LSEPLA-RLG----AQVTGIDAS------DDMVEVANEH-K----KMD-PVLEGAIAYRLEYEDTD 151 (282)
T ss_pred EEEeccCccc----cchhhH-hhC----CeeEeeccc------HHHHHHHHHh-h----hcC-chhccccceeeehhhcc
Confidence 9999999884 233444 333 569999963 3445554433 1 222 222222221 233444
Q ss_pred cccccccCCceEEEEeccccccccccccccCCcHHHHHHHHHhcCCC--EEEEEE
Q 004490 563 IEDLNIDSGEVLVVNCLYRFRNLLDETVVVDCPRNIVLNLIRKMNPD--VFVLGI 615 (749)
Q Consensus 563 ~edL~i~~dE~LaVN~~~~Lh~L~desv~~~spRd~vL~~IR~L~P~--Vfv~~e 615 (749)
.|++. +..=||-|+-.++|.-| |.+-.-.+++.++|. +||-.+
T Consensus 152 ~E~~~---~~fDaVvcsevleHV~d-------p~~~l~~l~~~lkP~G~lfitti 196 (282)
T KOG1270|consen 152 VEGLT---GKFDAVVCSEVLEHVKD-------PQEFLNCLSALLKPNGRLFITTI 196 (282)
T ss_pred hhhcc---cccceeeeHHHHHHHhC-------HHHHHHHHHHHhCCCCceEeeeh
Confidence 44443 44668889999999854 666666778999997 565443
No 83
>TIGR01716 RGG_Cterm transcriptional activator, Rgg/GadR/MutR family, C-terminal domain. This model describes the whole, except for a 60 residue N-terminal helix-turn-helix DNA-binding domain (PFAM pfam01381) of the family of proteins related to the transcriptional regulator Rgg, also called RopB. Rgg is required for secretion of several proteins, including a cysteine proteinase associated with virulence. GadR is a positive regulator of a glutamate-dependent acid resistance mechanism. MutR is a transcriptional activator for mutacin biosynthesis genes in Streptococcus mutans. This family appears restricted to the low-GC Gram-positive bacteria, including at least eight members in Lactococcus lactis.
Probab=25.06 E-value=1.7e+02 Score=29.63 Aligned_cols=55 Identities=20% Similarity=0.187 Sum_probs=45.9
Q ss_pred HHHHHHHHH-HHHHcCCHHHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHHHhcC
Q 004490 375 LRTLLTLCA-QAVAANDRRNAYELLKQIRQHSSSTGDGMQRMAECFADGLEARLAG 429 (749)
Q Consensus 375 L~~LLl~CA-qAVa~gd~~~A~~lL~~Irq~sSp~GD~~QRLA~yFaeAL~aRL~g 429 (749)
+..+|+.|. ..+..++...|..+|..|.++..|..+...|+...|.+||-.=+.|
T Consensus 127 i~~il~N~~~~~i~~~~~~~a~~~l~~l~~l~~~~~~~~~ki~~~f~~~l~~y~~g 182 (220)
T TIGR01716 127 VIQLLLNIAVLLIEKNEFSYAQYFLEKLEKILDPEDDLYERILFNFLKGIILYKEG 182 (220)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHHHHcC
Confidence 556666665 6677889999999999999999888888899999999999765544
No 84
>TIGR02129 hisA_euk phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase, eukaryotic type. This enzyme acts in the biosynthesis of histidine and has been characterized in S. cerevisiae and Arabidopsis where it complements the E. coli HisA gene. In eukaryotes the gene is known as HIS6. In bacteria, this gene is found in Fibrobacter succinogenes, presumably due to lateral gene transfer from plants in the rumen gut.
Probab=24.70 E-value=80 Score=34.14 Aligned_cols=26 Identities=8% Similarity=-0.123 Sum_probs=18.7
Q ss_pred hcCCeeEEEEeccccccchHHHHHHHhcCC
Q 004490 478 EKATRLHIIDFGIMYGFQWPCLIQRLSSRP 507 (749)
Q Consensus 478 ~g~~~VHIIDfgI~~G~QWP~Liq~LA~R~ 507 (749)
.|++.|||||+ +.+ ++ .+|..+....
T Consensus 50 ~Ga~~lHvVDL--g~~-n~-~~i~~i~~~~ 75 (253)
T TIGR02129 50 DGVKGCHVIML--GPN-ND-DAAKEALHAY 75 (253)
T ss_pred cCCCEEEEEEC--CCC-cH-HHHHHHHHhC
Confidence 58999999999 444 66 5566666543
No 85
>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed
Probab=23.50 E-value=7.6e+02 Score=28.36 Aligned_cols=101 Identities=11% Similarity=0.115 Sum_probs=53.6
Q ss_pred CCeeEEEEeccccccchHHHHHHHhcCCCCCCeEEEeeecCCCCCCCChHHHHHHHHHHHHHHHhCCCc-EEEEEcccCc
Q 004490 480 ATRLHIIDFGIMYGFQWPCLIQRLSSRPGGAPKLRITGIDLPQPGFKPAERVEETGRRLAKYAETFKVP-FEFNAIAQKW 558 (749)
Q Consensus 480 ~~~VHIIDfgI~~G~QWP~Liq~LA~R~gGPP~LRITgI~~p~~gfrpae~leeTGrRL~~~A~~~gVp-FeF~~Ia~~~ 558 (749)
...-+|+|+|.|.|. +--.||.+- -+++|||.. .+.++.+.+++ +..|+. .+|.. ..+
T Consensus 296 ~~~~~VLDlgcGtG~----~sl~la~~~-----~~V~gvD~s------~~al~~A~~n~----~~~~~~~v~~~~--~d~ 354 (443)
T PRK13168 296 QPGDRVLDLFCGLGN----FTLPLARQA-----AEVVGVEGV------EAMVERARENA----RRNGLDNVTFYH--ANL 354 (443)
T ss_pred CCCCEEEEEeccCCH----HHHHHHHhC-----CEEEEEeCC------HHHHHHHHHHH----HHcCCCceEEEE--eCh
Confidence 344689999999994 333466542 389999963 44555554433 333442 44432 223
Q ss_pred cccCcc-cccccCCceEEEEeccccccccccccccCCcHHHHHHHHHhcCCCEEEEE
Q 004490 559 DTIQIE-DLNIDSGEVLVVNCLYRFRNLLDETVVVDCPRNIVLNLIRKMNPDVFVLG 614 (749)
Q Consensus 559 E~l~~e-dL~i~~dE~LaVN~~~~Lh~L~desv~~~spRd~vL~~IR~L~P~Vfv~~ 614 (749)
++.-.. .+.-..=++|++|=.+. -.+.++..|.+++|+-+|.+
T Consensus 355 ~~~l~~~~~~~~~fD~Vi~dPPr~-------------g~~~~~~~l~~~~~~~ivyv 398 (443)
T PRK13168 355 EEDFTDQPWALGGFDKVLLDPPRA-------------GAAEVMQALAKLGPKRIVYV 398 (443)
T ss_pred HHhhhhhhhhcCCCCEEEECcCCc-------------ChHHHHHHHHhcCCCeEEEE
Confidence 221100 01001124555554332 02356788889999987654
No 86
>PLN02446 (5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase
Probab=23.46 E-value=82 Score=34.22 Aligned_cols=27 Identities=19% Similarity=0.176 Sum_probs=20.9
Q ss_pred hcCCeeEEEEeccccccchHHHHHHHhc
Q 004490 478 EKATRLHIIDFGIMYGFQWPCLIQRLSS 505 (749)
Q Consensus 478 ~g~~~VHIIDfgI~~G~QWP~Liq~LA~ 505 (749)
.|++.|||||++-+.+-+ -.+|.++++
T Consensus 55 ~Ga~~lHvVDLdgg~~~n-~~~i~~i~~ 81 (262)
T PLN02446 55 DGLTGGHVIMLGADDASL-AAALEALRA 81 (262)
T ss_pred CCCCEEEEEECCCCCccc-HHHHHHHHh
Confidence 589999999998766666 455666766
No 87
>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific. Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.
Probab=22.81 E-value=9.8e+02 Score=25.81 Aligned_cols=50 Identities=12% Similarity=0.175 Sum_probs=31.8
Q ss_pred eeEEEEeccccccchHHHHHHHhcCCCCCCeEEEeeecCCCCCCCChHHHHHHHHHHHHHHHhCCCc
Q 004490 482 RLHIIDFGIMYGFQWPCLIQRLSSRPGGAPKLRITGIDLPQPGFKPAERVEETGRRLAKYAETFKVP 548 (749)
Q Consensus 482 ~VHIIDfgI~~G~QWP~Liq~LA~R~gGPP~LRITgI~~p~~gfrpae~leeTGrRL~~~A~~~gVp 548 (749)
..+|+|+|.|.|. +.-.|+.+. |..++||||.. ...++.+.++ |+..|+.
T Consensus 122 ~~~vLDlG~GsG~----i~~~la~~~---~~~~v~avDis------~~al~~A~~n----~~~~~~~ 171 (284)
T TIGR03533 122 VKRILDLCTGSGC----IAIACAYAF---PEAEVDAVDIS------PDALAVAEIN----IERHGLE 171 (284)
T ss_pred CCEEEEEeCchhH----HHHHHHHHC---CCCEEEEEECC------HHHHHHHHHH----HHHcCCC
Confidence 4689999999994 444555442 35799999964 3445555444 3445553
No 88
>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=22.70 E-value=8.8e+02 Score=25.21 Aligned_cols=48 Identities=21% Similarity=0.374 Sum_probs=29.8
Q ss_pred cCCeeEEEEeccccccchHHHHHHHhcCCCCCCeEEEeeecCCCCCCCChHHHHHHHHHHH
Q 004490 479 KATRLHIIDFGIMYGFQWPCLIQRLSSRPGGAPKLRITGIDLPQPGFKPAERVEETGRRLA 539 (749)
Q Consensus 479 g~~~VHIIDfgI~~G~QWP~Liq~LA~R~gGPP~LRITgI~~p~~gfrpae~leeTGrRL~ 539 (749)
..+..+|+|+|.+.|. +...|+..- |..++||||.. ...++.+.+++.
T Consensus 106 ~~~~~~vLDiG~GsG~----~~~~la~~~---~~~~v~~iDis------~~~l~~a~~n~~ 153 (275)
T PRK09328 106 LKEPLRVLDLGTGSGA----IALALAKER---PDAEVTAVDIS------PEALAVARRNAK 153 (275)
T ss_pred ccCCCEEEEEcCcHHH----HHHHHHHHC---CCCEEEEEECC------HHHHHHHHHHHH
Confidence 4456789999999995 333333332 45789999963 344555544443
No 89
>TIGR01626 ytfJ_HI0045 conserved hypothetical protein YtfJ-family, TIGR01626. This model represents sequences from gamma proteobacteria that are related to the E. coli protein, YtfJ.
Probab=22.00 E-value=1.9e+02 Score=29.70 Aligned_cols=90 Identities=11% Similarity=0.056 Sum_probs=56.6
Q ss_pred CeeEEEEecccc---ccchHHHHHHHhcCCCCCCeEEE------eeecCCCCCCCChHHHHHHHHHHHHHHHhCCCcEEE
Q 004490 481 TRLHIIDFGIMY---GFQWPCLIQRLSSRPGGAPKLRI------TGIDLPQPGFKPAERVEETGRRLAKYAETFKVPFEF 551 (749)
Q Consensus 481 ~~VHIIDfgI~~---G~QWP~Liq~LA~R~gGPP~LRI------TgI~~p~~gfrpae~leeTGrRL~~~A~~~gVpFeF 551 (749)
-+||||.|=-+. +-.=-.+|.+|+.+. +.| |||.. .+....++.-+.+|+++.++.|-|
T Consensus 59 GKV~lvn~~Aswc~~c~~e~P~l~~l~~~~-----~~~~~y~~t~~IN~-------dd~~~~~~~fVk~fie~~~~~~P~ 126 (184)
T TIGR01626 59 GKVRVVHHIAGRTSAKEXNASLIDAIKAAK-----FPPVKYQTTTIINA-------DDAIVGTGMFVKSSAKKGKKENPW 126 (184)
T ss_pred CCEEEEEEEecCCChhhccchHHHHHHHcC-----CCcccccceEEEEC-------ccchhhHHHHHHHHHHHhcccCCc
Confidence 689999986543 235567899996552 777 88874 234677889999999999888776
Q ss_pred EEcccCccccCcccccccCC-ce-EEEEecccc
Q 004490 552 NAIAQKWDTIQIEDLNIDSG-EV-LVVNCLYRF 582 (749)
Q Consensus 552 ~~Ia~~~E~l~~edL~i~~d-E~-LaVN~~~~L 582 (749)
..+...-+........+..- ++ .+||-.=++
T Consensus 127 ~~vllD~~g~v~~~~gv~~~P~T~fVIDk~GkV 159 (184)
T TIGR01626 127 SQVVLDDKGAVKNAWQLNSEDSAIIVLDKTGKV 159 (184)
T ss_pred ceEEECCcchHHHhcCCCCCCceEEEECCCCcE
Confidence 65542112222223444332 55 566655433
No 90
>PF11020 DUF2610: Domain of unknown function (DUF2610); InterPro: IPR021277 This family is conserved in Proteobacteria. One member is annotated as being elongation factor P but this could not be confirmed.
Probab=21.72 E-value=97 Score=28.08 Aligned_cols=22 Identities=36% Similarity=0.465 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHhCCCcEE
Q 004490 529 ERVEETGRRLAKYAETFKVPFE 550 (749)
Q Consensus 529 e~leeTGrRL~~~A~~~gVpFe 550 (749)
+.+.+.-.+|.+.|++-||||+
T Consensus 48 ~~V~~sl~kL~~La~~N~v~fe 69 (82)
T PF11020_consen 48 EKVMDSLSKLYKLAKENNVSFE 69 (82)
T ss_pred HHHHHHHHHHHHHHHHcCCCHH
Confidence 4577788899999999999986
No 91
>PRK10867 signal recognition particle protein; Provisional
Probab=21.71 E-value=5.7e+02 Score=29.80 Aligned_cols=53 Identities=13% Similarity=0.174 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHcC--CHHHHHHHHHHHhhccCC----CC-ChhhHHHHHHHHHHHHHhcC
Q 004490 377 TLLTLCAQAVAAN--DRRNAYELLKQIRQHSSS----TG-DGMQRMAECFADGLEARLAG 429 (749)
Q Consensus 377 ~LLl~CAqAVa~g--d~~~A~~lL~~Irq~sSp----~G-D~~QRLA~yFaeAL~aRL~g 429 (749)
..|-+--.|.-.. +...|.+++++|++.+.- .+ ++.|.+..+..+.|...|.+
T Consensus 29 ~~l~ei~~~Ll~aDV~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~el~~~l~~ 88 (433)
T PRK10867 29 EALREVRLALLEADVNLPVVKDFIARVKEKAVGQEVLKSLTPGQQVIKIVNDELVEILGG 88 (433)
T ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHhhccccccCCcHHHHHHHHHHHHHHHhCC
Confidence 4444444444333 568899999999876432 22 45677888888888887754
No 92
>PHA03411 putative methyltransferase; Provisional
Probab=21.65 E-value=1.7e+02 Score=32.24 Aligned_cols=62 Identities=15% Similarity=0.146 Sum_probs=41.6
Q ss_pred HHHHhhhCCccchhhHhHhHHHHHhh--hcCCeeEEEEeccccccchHHHHHHHhcCCCCCCeEEEeeecCC
Q 004490 452 YHLFLAACPFRKLSNFFSNKTIMNLA--EKATRLHIIDFGIMYGFQWPCLIQRLSSRPGGAPKLRITGIDLP 521 (749)
Q Consensus 452 y~~f~~~~Pf~kfa~ftANqaILeA~--~g~~~VHIIDfgI~~G~QWP~Liq~LA~R~gGPP~LRITgI~~p 521 (749)
|..|..-+ +...+.||+.+.|+..+ .....-+|+|+|.+.|. +...++.+.+ ..+||||+..
T Consensus 34 ~~~~~g~~-~~~~G~FfTP~~i~~~f~~~~~~~grVLDLGcGsGi----lsl~la~r~~---~~~V~gVDis 97 (279)
T PHA03411 34 YNNYHGDG-LGGSGAFFTPEGLAWDFTIDAHCTGKVLDLCAGIGR----LSFCMLHRCK---PEKIVCVELN 97 (279)
T ss_pred HHhccccc-ccCceeEcCCHHHHHHHHhccccCCeEEEcCCCCCH----HHHHHHHhCC---CCEEEEEECC
Confidence 55556666 77778888888888543 23334579999999993 3334444432 2699999963
No 93
>KOG2324 consensus Prolyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=21.44 E-value=1.1e+02 Score=35.04 Aligned_cols=38 Identities=32% Similarity=0.517 Sum_probs=23.4
Q ss_pred HHHHHHHHHHhCCCcEEEEEcc-cCccccCcccccccCCc
Q 004490 534 TGRRLAKYAETFKVPFEFNAIA-QKWDTIQIEDLNIDSGE 572 (749)
Q Consensus 534 TGrRL~~~A~~~gVpFeF~~Ia-~~~E~l~~edL~i~~dE 572 (749)
+|.||. -|+++|+||-..+=. ..|+....|-..++.||
T Consensus 375 iG~Ri~-dA~~lG~PfviVvg~s~~~~~~~~EV~~~~~ge 413 (457)
T KOG2324|consen 375 IGKRIK-DANRLGIPFVIVVGNSASWDNPEIEVRTIRWGE 413 (457)
T ss_pred hHHhhh-hHHhcCCCEEEEEcccccCCCceEEEEEeecCc
Confidence 456654 589999999875553 35666555444444443
No 94
>PF07521 RMMBL: RNA-metabolising metallo-beta-lactamase; InterPro: IPR011108 The metallo-beta-lactamase fold contains five sequence motifs. The first four motifs are found in IPR001279 from INTERPRO and are common to all metallo-beta-lactamases. The fifth motif appears to be specific to function. This entry represents the fifth motif from metallo-beta-lactamases involved in RNA metabolism [].; PDB: 3ZQ4_D 2I7T_A 2I7V_A 2YCB_B 3BK1_A 3T3N_A 3BK2_A 3T3O_A 3AF5_A 3AF6_A ....
Probab=21.40 E-value=1.8e+02 Score=22.72 Aligned_cols=37 Identities=22% Similarity=0.378 Sum_probs=22.6
Q ss_pred ceEEEEeccccccccccccccCCcHHHHHHHHHhcCCCEEEE
Q 004490 572 EVLVVNCLYRFRNLLDETVVVDCPRNIVLNLIRKMNPDVFVL 613 (749)
Q Consensus 572 E~LaVN~~~~Lh~L~desv~~~spRd~vL~~IR~L~P~Vfv~ 613 (749)
|.+-|||....-++.. -..++.++..|+.++|+.+++
T Consensus 1 e~i~v~a~v~~~~fSg-----Had~~~L~~~i~~~~p~~vil 37 (43)
T PF07521_consen 1 EMIPVRARVEQIDFSG-----HADREELLEFIEQLNPRKVIL 37 (43)
T ss_dssp CEEE--SEEEESGCSS-----S-BHHHHHHHHHHHCSSEEEE
T ss_pred CEEEeEEEEEEEeecC-----CCCHHHHHHHHHhcCCCEEEE
Confidence 3556776433222322 245889999999999997765
No 95
>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed
Probab=21.36 E-value=1e+03 Score=25.96 Aligned_cols=98 Identities=16% Similarity=0.233 Sum_probs=53.8
Q ss_pred eeEEEEeccccccchHHHHHHHhcCCCCCCeEEEeeecCCCCCCCChHHHHHHHHHHHHHHHhCCCc-EEEEEcccCccc
Q 004490 482 RLHIIDFGIMYGFQWPCLIQRLSSRPGGAPKLRITGIDLPQPGFKPAERVEETGRRLAKYAETFKVP-FEFNAIAQKWDT 560 (749)
Q Consensus 482 ~VHIIDfgI~~G~QWP~Liq~LA~R~gGPP~LRITgI~~p~~gfrpae~leeTGrRL~~~A~~~gVp-FeF~~Ia~~~E~ 560 (749)
.-+|+|+|.|.|. +--.||.+ + -+++|||.. ...++.+.+. |+..|++ .+|... ..++
T Consensus 174 ~~~VLDl~cG~G~----~sl~la~~-~----~~V~gvD~s------~~av~~A~~n----~~~~~l~~v~~~~~--D~~~ 232 (315)
T PRK03522 174 PRSMWDLFCGVGG----FGLHCATP-G----MQLTGIEIS------AEAIACAKQS----AAELGLTNVQFQAL--DSTQ 232 (315)
T ss_pred CCEEEEccCCCCH----HHHHHHhc-C----CEEEEEeCC------HHHHHHHHHH----HHHcCCCceEEEEc--CHHH
Confidence 3589999999994 33445553 2 389999963 3445444333 3455664 555432 2322
Q ss_pred cCcccccccCCceEEEEeccccccccccccccCCcHHHHHHHHHhcCCCEEEEE
Q 004490 561 IQIEDLNIDSGEVLVVNCLYRFRNLLDETVVVDCPRNIVLNLIRKMNPDVFVLG 614 (749)
Q Consensus 561 l~~edL~i~~dE~LaVN~~~~Lh~L~desv~~~spRd~vL~~IR~L~P~Vfv~~ 614 (749)
+... . ...-++|++|=... .--..++..|.+++|+-+|.+
T Consensus 233 ~~~~-~-~~~~D~Vv~dPPr~------------G~~~~~~~~l~~~~~~~ivyv 272 (315)
T PRK03522 233 FATA-Q-GEVPDLVLVNPPRR------------GIGKELCDYLSQMAPRFILYS 272 (315)
T ss_pred HHHh-c-CCCCeEEEECCCCC------------CccHHHHHHHHHcCCCeEEEE
Confidence 2111 1 01124666663210 112357788899999877653
No 96
>PRK07402 precorrin-6B methylase; Provisional
Probab=20.87 E-value=3.3e+02 Score=27.26 Aligned_cols=65 Identities=20% Similarity=0.146 Sum_probs=36.4
Q ss_pred hHhHhHHHHHhhhcCCeeEEEEeccccccchHHHHHHHhcCCCCCCeEEEeeecCCCCCCCChHHHHHHHHHHHHHHHhC
Q 004490 466 NFFSNKTIMNLAEKATRLHIIDFGIMYGFQWPCLIQRLSSRPGGAPKLRITGIDLPQPGFKPAERVEETGRRLAKYAETF 545 (749)
Q Consensus 466 ~ftANqaILeA~~g~~~VHIIDfgI~~G~QWP~Liq~LA~R~gGPP~LRITgI~~p~~gfrpae~leeTGrRL~~~A~~~ 545 (749)
.--....|++.+.-...=.|+|+|-+.|. +... ++.+. |..+||+||.. .+.++.+.+++ +++
T Consensus 25 ~~~v~~~l~~~l~~~~~~~VLDiG~G~G~-~~~~---la~~~---~~~~V~~vD~s------~~~~~~a~~n~----~~~ 87 (196)
T PRK07402 25 KREVRLLLISQLRLEPDSVLWDIGAGTGT-IPVE---AGLLC---PKGRVIAIERD------EEVVNLIRRNC----DRF 87 (196)
T ss_pred HHHHHHHHHHhcCCCCCCEEEEeCCCCCH-HHHH---HHHHC---CCCEEEEEeCC------HHHHHHHHHHH----HHh
Confidence 34444455666643344579999999996 2222 23221 22589999953 34455444444 445
Q ss_pred CC
Q 004490 546 KV 547 (749)
Q Consensus 546 gV 547 (749)
++
T Consensus 88 ~~ 89 (196)
T PRK07402 88 GV 89 (196)
T ss_pred CC
Confidence 55
No 97
>COG2942 N-acyl-D-glucosamine 2-epimerase [Carbohydrate transport and metabolism]
Probab=20.83 E-value=6.6e+02 Score=29.02 Aligned_cols=89 Identities=21% Similarity=0.235 Sum_probs=59.9
Q ss_pred HHHHHHHHhhhC---CccchhhHhHhHHHHHhhhcCC---eeEE-------EEe-----ccccccchHHHHHHHhcCCCC
Q 004490 448 VLKAYHLFLAAC---PFRKLSNFFSNKTIMNLAEKAT---RLHI-------IDF-----GIMYGFQWPCLIQRLSSRPGG 509 (749)
Q Consensus 448 ~lkAy~~f~~~~---Pf~kfa~ftANqaILeA~~g~~---~VHI-------IDf-----gI~~G~QWP~Liq~LA~R~gG 509 (749)
++.|+-+-+++. .|...|.-+|.-+|-+-+.+++ +=|. -.| --+++|-|..||-.++.|.+
T Consensus 179 l~EA~LA~~e~~~~~~~~~~A~~ia~l~~~rf~d~~~g~v~E~fd~dW~p~~~frg~~~ePGH~fEW~~Lll~~a~~~~- 257 (388)
T COG2942 179 LLEAMLAAYEATGEKTWLDRADRIADLIISRFADAESGLVREHFDHDWNPAHGFRGRGIEPGHQFEWAWLLLDIARRRG- 257 (388)
T ss_pred HHHHHHHHHhccCchhHHHHHHHHHHHHHHHhhhcccCcHhhhccccCCcCCCcccCCCCCchHHHHHHHHHHHHHHhc-
Confidence 444444444554 5677788888888877765443 1121 122 23577889999999998753
Q ss_pred CCeEEEeeecCCCCCCCChHHHHHHHHHHHHHHHhCCCcEEEEEcc
Q 004490 510 APKLRITGIDLPQPGFKPAERVEETGRRLAKYAETFKVPFEFNAIA 555 (749)
Q Consensus 510 PP~LRITgI~~p~~gfrpae~leeTGrRL~~~A~~~gVpFeF~~Ia 555 (749)
...+.+..++|-.-|-..|+.-++..+.
T Consensus 258 ------------------~~~l~~~A~~lf~~a~~~g~d~~~gg~~ 285 (388)
T COG2942 258 ------------------RAWLIEAARRLFDIAVADGWDPERGGAY 285 (388)
T ss_pred ------------------hhHHHHHHHHHHHHHHHhccCcccCeEE
Confidence 2457788899999999999887776553
No 98
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=20.71 E-value=1.4e+03 Score=26.91 Aligned_cols=44 Identities=20% Similarity=0.411 Sum_probs=28.3
Q ss_pred eeEEEEeccccccchHHHHHHHhcCCCCCCeEEEeeecCCCCCCCChHHHHHHHHHH
Q 004490 482 RLHIIDFGIMYGFQWPCLIQRLSSRPGGAPKLRITGIDLPQPGFKPAERVEETGRRL 538 (749)
Q Consensus 482 ~VHIIDfgI~~G~QWP~Liq~LA~R~gGPP~LRITgI~~p~~gfrpae~leeTGrRL 538 (749)
...|+|+|.|.| .+.-.|+.+- |..++||||.. ...++.+.+++
T Consensus 139 ~~~VLDlG~GsG----~iai~la~~~---p~~~v~avDis------~~al~~A~~N~ 182 (506)
T PRK01544 139 FLNILELGTGSG----CIAISLLCEL---PNANVIATDIS------LDAIEVAKSNA 182 (506)
T ss_pred CCEEEEccCchh----HHHHHHHHHC---CCCeEEEEECC------HHHHHHHHHHH
Confidence 357999999988 3444555442 34699999963 34455555443
No 99
>smart00857 Resolvase Resolvase, N terminal domain. The N-terminal domain of the resolvase family contains the active site and the dimer interface. The extended arm at the C-terminus of this domain connects to the C-terminal helix-turn-helix domain of resolvase.
Probab=20.69 E-value=7e+02 Score=23.32 Aligned_cols=95 Identities=19% Similarity=0.215 Sum_probs=50.3
Q ss_pred HHHHHHHHHHHHHhCCCcEE--EEEcccCccccCcccc-----cccCCc--eEEEEeccccccccccccccCCcHHHHHH
Q 004490 531 VEETGRRLAKYAETFKVPFE--FNAIAQKWDTIQIEDL-----NIDSGE--VLVVNCLYRFRNLLDETVVVDCPRNIVLN 601 (749)
Q Consensus 531 leeTGrRL~~~A~~~gVpFe--F~~Ia~~~E~l~~edL-----~i~~dE--~LaVN~~~~Lh~L~desv~~~spRd~vL~ 601 (749)
++.--+.|.+||++.|.++. |.-...+-.......| .+..|+ +|+|--.-+|-+-..+ .-.++.
T Consensus 17 ~~~Q~~~~~~~a~~~g~~i~~~~~d~~~Sg~~~~Rp~l~~ll~~~~~g~~~~ivv~~~~Rl~R~~~~-------~~~~~~ 89 (148)
T smart00857 17 LERQLEALRAYAKANGWEVVRIYEDEGVSGKKADRPGLQRLLADLRAGDIDVLVVYKLDRLGRSLRD-------LLALLE 89 (148)
T ss_pred HHHHHHHHHHHHHHCCCEEEEEEEeCCCcCCCCCCHHHHHHHHHHHcCCCCEEEEeccchhhCcHHH-------HHHHHH
Confidence 55556779999999998753 3332111111111122 256677 8888877776553221 234677
Q ss_pred HHHhcCCCEEEEEEecCCCCcCchHHHHHHHHH
Q 004490 602 LIRKMNPDVFVLGIVNGAHSAPFFITRFREALF 634 (749)
Q Consensus 602 ~IR~L~P~Vfv~~e~ng~~nsp~F~~RF~EAL~ 634 (749)
.++..+=.|++.. ++-.+......++...+.
T Consensus 90 ~l~~~gi~l~~~~--~~~~~~~~~~~~~~~~i~ 120 (148)
T smart00857 90 LLEKKGVRLVSVT--EGIEDTSTPAGRLMLDIL 120 (148)
T ss_pred HHHHCCCEEEECc--CCCCCCCCHHHHHHHHHH
Confidence 7888875555432 332232233455444333
No 100
>cd01822 Lysophospholipase_L1_like Lysophospholipase L1-like subgroup of SGNH-hydrolases. The best characterized member in this family is TesA, an E. coli periplasmic protein with thioesterase, esterase, arylesterase, protease and lysophospholipase activity.
Probab=20.47 E-value=7.4e+02 Score=23.48 Aligned_cols=20 Identities=10% Similarity=0.283 Sum_probs=14.7
Q ss_pred HHHHHHHHHhcCCCEEEEEE
Q 004490 596 RNIVLNLIRKMNPDVFVLGI 615 (749)
Q Consensus 596 Rd~vL~~IR~L~P~Vfv~~e 615 (749)
...+++.+|+-+++|++++.
T Consensus 90 l~~li~~~~~~~~~vil~~~ 109 (177)
T cd01822 90 LRQMIETAQARGAPVLLVGM 109 (177)
T ss_pred HHHHHHHHHHCCCeEEEEec
Confidence 35677778877888887754
No 101
>PRK10507 bifunctional glutathionylspermidine amidase/glutathionylspermidine synthetase; Provisional
Probab=20.12 E-value=3e+02 Score=33.62 Aligned_cols=85 Identities=14% Similarity=0.107 Sum_probs=54.4
Q ss_pred eccccc-cchHHHHHHHhc---CCCCCCeEEEeeecCCCCCCCChHHHHHHHHHHHHHHHhCCCcEEEEE-cccCccccC
Q 004490 488 FGIMYG-FQWPCLIQRLSS---RPGGAPKLRITGIDLPQPGFKPAERVEETGRRLAKYAETFKVPFEFNA-IAQKWDTIQ 562 (749)
Q Consensus 488 fgI~~G-~QWP~Liq~LA~---R~gGPP~LRITgI~~p~~gfrpae~leeTGrRL~~~A~~~gVpFeF~~-Ia~~~E~l~ 562 (749)
+|+..| -||-+|.++|.. +.++.|.+-|+..+.. .+.. |-+-|.++|+.-|++-+|.. | ++|.
T Consensus 353 ~g~~~~~dq~n~L~e~Lv~aw~~~~~~~~vhf~~~~d~------eED~--T~~YL~d~a~qAG~~t~~~~~i----edL~ 420 (619)
T PRK10507 353 GYKGNGHNPAEGLINELAGAWKHSRARPFVHIMQDKDI------EENY--HAQFMQQALHQAGFETKILRGL----DELR 420 (619)
T ss_pred cCCCCcccHHHHHHHHHHHHHHhcCCCCcEEEEECCCC------CcHH--HHHHHHHHHHHCCCceEEecCH----HHeE
Confidence 344444 588888777764 2334478889877532 2222 77789999999999988863 4 3343
Q ss_pred cc-cccccCCceEEEEecccccc
Q 004490 563 IE-DLNIDSGEVLVVNCLYRFRN 584 (749)
Q Consensus 563 ~e-dL~i~~dE~LaVN~~~~Lh~ 584 (749)
.. +=.+-..+-..|.++|+|..
T Consensus 421 ~d~~G~~~D~dg~~I~~vfKlyP 443 (619)
T PRK10507 421 WDAAGQLIDGDGRLVNCVWKTWA 443 (619)
T ss_pred ECCCCcEECCCCCEeeeeeeccc
Confidence 32 11233345567899998764
Done!