BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 004491
         (749 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2P10|A Chain A, Crystal Structure Of A Putative Phosphonopyruvate
           Hydrolase (Mll9387) From Mesorhizobium Loti Maff303099
           At 2.15 A Resolution
 pdb|2P10|B Chain B, Crystal Structure Of A Putative Phosphonopyruvate
           Hydrolase (Mll9387) From Mesorhizobium Loti Maff303099
           At 2.15 A Resolution
 pdb|2P10|C Chain C, Crystal Structure Of A Putative Phosphonopyruvate
           Hydrolase (Mll9387) From Mesorhizobium Loti Maff303099
           At 2.15 A Resolution
 pdb|2P10|D Chain D, Crystal Structure Of A Putative Phosphonopyruvate
           Hydrolase (Mll9387) From Mesorhizobium Loti Maff303099
           At 2.15 A Resolution
 pdb|2P10|E Chain E, Crystal Structure Of A Putative Phosphonopyruvate
           Hydrolase (Mll9387) From Mesorhizobium Loti Maff303099
           At 2.15 A Resolution
 pdb|2P10|F Chain F, Crystal Structure Of A Putative Phosphonopyruvate
           Hydrolase (Mll9387) From Mesorhizobium Loti Maff303099
           At 2.15 A Resolution
          Length = 286

 Score =  273 bits (698), Expect = 3e-73,   Method: Compositional matrix adjust.
 Identities = 139/266 (52%), Positives = 174/266 (65%)

Query: 481 ILSKLKYQIDKGLPXXXXXXXXXXXXKFEEAGGVDLIVLYNSGRFRMAGRGSLAGLLPFA 540
           ++ + + +I  G P            K EEAG +DLIV+YNSGR+R AGRGSLAGLL + 
Sbjct: 16  LVDRFQKKIRAGEPIIGGGAGTGLSAKSEEAGDIDLIVIYNSGRYRXAGRGSLAGLLAYG 75

Query: 541 DANAVVLEMANXXXXXXXXXXXXAGVCGTDPFRRVDYFLKQLESIGFFGVQNFPTVGLFD 600
           +AN +V++ A             AGV GTDPF     FL++L+ IGF GVQNFPTVGL D
Sbjct: 76  NANQIVVDXAREVLPVVRHTPVLAGVNGTDPFXVXSTFLRELKEIGFAGVQNFPTVGLID 135

Query: 601 GNFRQNLEETGMGYGLEVEMIDKAHKMGLLTTPYAFNEGEAVKMAKAGADIIVAHMGLTT 660
           G FRQNLEETG  Y  EVE I +AHK+ LLTTPY F+  +AV  AKAGADI+V H GLTT
Sbjct: 136 GLFRQNLEETGXSYAQEVEXIAEAHKLDLLTTPYVFSPEDAVAXAKAGADILVCHXGLTT 195

Query: 661 SGSIGAKTALSLDESVDRVQAIADAAHRINPDAIVLCHGGPISSPSEAEFILKRTKGVHG 720
            G+IGA++  S D+ V  +    +AA  I  D I+L HGGPI++P +A FIL   +G HG
Sbjct: 196 GGAIGARSGKSXDDCVSLINECIEAARTIRDDIIILSHGGPIANPEDARFILDSCQGCHG 255

Query: 721 FYGASSMERLPVEQAITSTMRQYKSI 746
           FYGASS ERLP E+AI S    +K+I
Sbjct: 256 FYGASSXERLPAEEAIRSQTLAFKAI 281


>pdb|3Q13|A Chain A, The Structure Of The Ca2+-Binding, Glycosylated F-Spondin
           Domain Of F- Spondin, A C2-Domain Variant From
           Extracellular Matrix
          Length = 258

 Score = 34.7 bits (78), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 19/55 (34%), Positives = 30/55 (54%), Gaps = 6/55 (10%)

Query: 363 LPQNGI---SALDAPGKPFYDPEATGTLISELRTLIQ--TNEDRQVKVYPHNIND 412
           +PQ  I   ++LD P  PFYDPE  G++    R +I+    +  Q  + P N++D
Sbjct: 187 IPQEKIRPLTSLDHPQSPFYDPEG-GSITQVARVVIERIARKGEQCNIVPDNVDD 240


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.318    0.135    0.383 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 18,804,486
Number of Sequences: 62578
Number of extensions: 698719
Number of successful extensions: 2130
Number of sequences better than 100.0: 4
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 2128
Number of HSP's gapped (non-prelim): 5
length of query: 749
length of database: 14,973,337
effective HSP length: 106
effective length of query: 643
effective length of database: 8,340,069
effective search space: 5362664367
effective search space used: 5362664367
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)