Query 004491
Match_columns 749
No_of_seqs 228 out of 416
Neff 4.4
Searched_HMMs 46136
Date Fri Mar 29 00:18:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004491.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/004491hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF06792 UPF0261: Uncharacteri 100.0 2E-154 3E-159 1247.0 46.4 402 5-428 1-403 (403)
2 PRK02399 hypothetical protein; 100.0 5E-153 1E-157 1233.7 45.5 403 5-430 3-405 (406)
3 COG5441 Uncharacterized conser 100.0 2E-137 4E-142 1065.2 37.4 398 5-429 2-400 (401)
4 PF09370 TIM-br_sig_trns: TIM- 100.0 6E-119 1E-123 923.6 23.6 268 479-746 1-268 (268)
5 COG5564 Predicted TIM-barrel e 100.0 1E-102 2E-107 779.8 22.8 273 475-747 3-275 (276)
6 cd04730 NPD_like 2-Nitropropan 98.5 3.7E-06 8.1E-11 85.3 16.5 164 544-741 39-205 (236)
7 PRK00278 trpC indole-3-glycero 98.2 4.7E-05 1E-09 80.2 16.9 186 503-745 73-258 (260)
8 cd00331 IGPS Indole-3-glycerol 98.2 0.00012 2.7E-09 74.0 18.2 171 504-729 35-206 (217)
9 TIGR02320 PEP_mutase phosphoen 98.0 0.00017 3.8E-09 77.2 15.8 203 485-711 1-232 (285)
10 cd06556 ICL_KPHMT Members of t 98.0 9.7E-05 2.1E-09 77.4 13.4 99 483-591 2-107 (240)
11 PRK13111 trpA tryptophan synth 97.9 0.00034 7.4E-09 74.0 15.9 165 546-744 76-253 (258)
12 cd04724 Tryptophan_synthase_al 97.9 0.00056 1.2E-08 71.3 16.5 152 545-731 63-222 (242)
13 PLN02591 tryptophan synthase 97.8 0.00057 1.2E-08 72.1 15.5 168 545-744 65-246 (250)
14 TIGR02321 Pphn_pyruv_hyd phosp 97.8 0.00078 1.7E-08 72.5 16.5 163 483-658 5-189 (290)
15 cd00377 ICL_PEPM Members of th 97.7 0.00064 1.4E-08 71.1 13.9 190 485-711 1-218 (243)
16 PRK11320 prpB 2-methylisocitra 97.7 0.0014 3E-08 70.7 16.4 202 475-711 2-226 (292)
17 PRK00311 panB 3-methyl-2-oxobu 97.6 0.00029 6.2E-09 74.9 10.7 146 482-655 4-181 (264)
18 cd04740 DHOD_1B_like Dihydroor 97.6 0.001 2.3E-08 70.4 14.8 217 493-729 11-265 (296)
19 cd04722 TIM_phosphate_binding 97.6 0.0024 5.1E-08 60.9 15.2 179 505-725 17-200 (200)
20 PRK07259 dihydroorotate dehydr 97.5 0.0019 4E-08 68.9 15.1 215 493-729 13-268 (301)
21 TIGR03151 enACPred_II putative 97.5 0.0016 3.4E-08 70.5 14.3 187 484-727 3-193 (307)
22 PRK00208 thiG thiazole synthas 97.5 0.00046 1E-08 72.7 9.5 105 613-733 105-215 (250)
23 cd04728 ThiG Thiazole synthase 97.4 0.00055 1.2E-08 72.1 9.4 104 614-733 106-215 (248)
24 PRK04302 triosephosphate isome 97.4 0.0014 3.1E-08 67.2 12.1 134 576-731 75-209 (223)
25 cd00429 RPE Ribulose-5-phospha 97.4 0.013 2.8E-07 58.2 18.4 191 506-744 18-211 (211)
26 TIGR01163 rpe ribulose-phospha 97.4 0.012 2.6E-07 58.6 17.3 192 505-744 16-210 (210)
27 PRK01130 N-acetylmannosamine-6 97.3 0.00097 2.1E-08 67.9 9.4 128 576-729 78-207 (221)
28 cd02810 DHOD_DHPD_FMN Dihydroo 97.3 0.0074 1.6E-07 63.6 15.8 207 504-728 24-276 (289)
29 TIGR02319 CPEP_Pphonmut carbox 97.3 0.0099 2.1E-07 64.3 16.5 159 483-655 6-185 (294)
30 TIGR00262 trpA tryptophan synt 97.2 0.007 1.5E-07 63.9 14.6 153 545-729 73-232 (256)
31 PRK05286 dihydroorotate dehydr 97.2 0.026 5.7E-07 61.9 18.9 217 492-726 59-320 (344)
32 cd02809 alpha_hydroxyacid_oxid 97.2 0.0079 1.7E-07 64.5 14.4 179 493-726 65-258 (299)
33 cd06557 KPHMT-like Ketopantoat 97.1 0.0044 9.5E-08 65.7 12.0 143 483-655 2-178 (254)
34 cd04726 KGPDC_HPS 3-Keto-L-gul 97.1 0.0061 1.3E-07 60.6 12.3 135 558-727 52-189 (202)
35 cd00381 IMPDH IMPDH: The catal 97.1 0.019 4E-07 62.7 16.4 187 488-727 30-229 (325)
36 cd04729 NanE N-acetylmannosami 97.1 0.0017 3.6E-08 66.2 7.8 127 577-729 83-211 (219)
37 TIGR01037 pyrD_sub1_fam dihydr 97.1 0.01 2.2E-07 63.2 14.0 154 559-731 90-270 (300)
38 PRK13125 trpA tryptophan synth 97.0 0.014 3E-07 60.9 14.4 169 548-745 64-238 (244)
39 CHL00200 trpA tryptophan synth 97.0 0.02 4.4E-07 61.0 15.2 150 545-727 78-234 (263)
40 cd00945 Aldolase_Class_I Class 96.9 0.023 5E-07 55.2 14.3 138 559-723 48-200 (201)
41 PLN02274 inosine-5'-monophosph 96.9 0.015 3.3E-07 67.0 14.6 162 471-729 207-385 (505)
42 PRK13957 indole-3-glycerol-pho 96.9 0.032 6.9E-07 59.2 15.7 170 505-729 66-235 (247)
43 TIGR02317 prpB methylisocitrat 96.9 0.03 6.6E-07 60.4 15.8 155 483-655 3-181 (285)
44 PF03060 NMO: Nitronate monoox 96.7 0.036 7.9E-07 60.4 14.9 200 484-727 3-222 (330)
45 cd04740 DHOD_1B_like Dihydroor 96.7 0.039 8.4E-07 58.6 14.8 172 479-660 75-265 (296)
46 cd04731 HisF The cyclase subun 96.6 0.046 9.9E-07 56.5 14.1 87 638-739 152-240 (243)
47 TIGR00737 nifR3_yhdG putative 96.6 0.0094 2E-07 64.3 9.5 152 558-727 61-225 (319)
48 TIGR01302 IMP_dehydrog inosine 96.6 0.036 7.9E-07 62.9 14.4 164 470-727 185-359 (450)
49 PRK06843 inosine 5-monophospha 96.5 0.057 1.2E-06 61.0 15.4 83 634-727 201-288 (404)
50 cd04738 DHOD_2_like Dihydrooro 96.5 0.088 1.9E-06 57.4 16.5 216 493-726 50-311 (327)
51 cd02810 DHOD_DHPD_FMN Dihydroo 96.4 0.041 8.9E-07 58.1 12.9 172 478-657 82-274 (289)
52 cd02801 DUS_like_FMN Dihydrour 96.4 0.051 1.1E-06 55.1 13.0 156 558-731 53-220 (231)
53 COG2513 PrpB PEP phosphonomuta 96.4 0.056 1.2E-06 58.4 13.6 159 480-655 5-186 (289)
54 cd00331 IGPS Indole-3-glycerol 96.4 0.08 1.7E-06 53.8 14.3 132 558-721 9-147 (217)
55 cd04739 DHOD_like Dihydroorota 96.3 0.11 2.3E-06 56.8 15.8 216 492-726 12-268 (325)
56 PRK07259 dihydroorotate dehydr 96.2 0.11 2.4E-06 55.4 14.6 192 460-660 58-268 (301)
57 PRK01060 endonuclease IV; Prov 96.2 0.12 2.5E-06 54.0 14.4 131 569-716 8-169 (281)
58 cd04742 NPD_FabD 2-Nitropropan 96.1 0.34 7.3E-06 55.1 18.5 201 484-727 5-251 (418)
59 PF13714 PEP_mutase: Phosphoen 96.1 0.16 3.5E-06 53.5 14.7 152 485-657 1-177 (238)
60 TIGR01303 IMP_DH_rel_1 IMP deh 96.0 0.065 1.4E-06 61.6 12.7 148 472-714 189-349 (475)
61 cd04727 pdxS PdxS is a subunit 96.0 0.26 5.6E-06 53.4 16.1 177 503-728 18-229 (283)
62 PRK05581 ribulose-phosphate 3- 96.0 0.44 9.5E-06 48.1 17.1 192 506-745 22-216 (220)
63 TIGR01182 eda Entner-Doudoroff 95.9 0.2 4.3E-06 51.9 14.5 106 619-745 92-202 (204)
64 PLN02424 ketopantoate hydroxym 95.9 0.026 5.7E-07 62.0 8.6 125 482-659 24-161 (332)
65 PRK00043 thiE thiamine-phospha 95.8 0.29 6.4E-06 48.8 15.0 163 508-729 29-193 (212)
66 PF00218 IGPS: Indole-3-glycer 95.7 0.018 3.9E-07 61.2 6.0 178 505-737 73-252 (254)
67 cd00452 KDPG_aldolase KDPG and 95.7 0.3 6.6E-06 49.0 14.3 154 506-728 22-175 (190)
68 TIGR03128 RuMP_HxlA 3-hexulose 95.7 0.082 1.8E-06 53.0 10.2 162 543-746 40-205 (206)
69 TIGR00735 hisF imidazoleglycer 95.6 0.43 9.3E-06 50.1 15.7 183 505-740 35-247 (254)
70 PRK05567 inosine 5'-monophosph 95.6 0.18 3.8E-06 58.0 13.9 162 471-728 190-364 (486)
71 cd04743 NPD_PKS 2-Nitropropane 95.5 0.11 2.5E-06 56.9 11.6 154 543-727 39-205 (320)
72 PRK08318 dihydropyrimidine deh 95.5 1.4 3E-05 49.6 20.2 159 552-727 92-285 (420)
73 PRK06552 keto-hydroxyglutarate 95.4 0.15 3.2E-06 52.9 11.2 104 619-745 100-207 (213)
74 TIGR01304 IMP_DH_rel_2 IMP deh 95.3 0.23 5.1E-06 55.5 13.3 131 576-744 102-245 (369)
75 PRK07565 dihydroorotate dehydr 95.3 0.51 1.1E-05 51.6 15.7 217 492-727 13-271 (334)
76 PRK06801 hypothetical protein; 95.3 0.8 1.7E-05 49.7 16.8 175 507-725 36-234 (286)
77 TIGR00343 pyridoxal 5'-phospha 95.2 1.4 3.1E-05 47.9 18.3 178 502-727 19-231 (287)
78 PRK05718 keto-hydroxyglutarate 95.2 0.14 3.1E-06 53.1 10.5 111 612-745 94-209 (212)
79 PRK11815 tRNA-dihydrouridine s 95.1 0.17 3.7E-06 55.5 11.2 153 559-727 64-236 (333)
80 cd04724 Tryptophan_synthase_al 95.1 1.1 2.5E-05 46.9 16.7 131 566-717 6-154 (242)
81 TIGR01859 fruc_bis_ald_ fructo 95.0 1.1 2.4E-05 48.4 16.9 179 507-727 34-233 (282)
82 PRK10550 tRNA-dihydrouridine s 95.0 0.5 1.1E-05 51.6 14.3 148 558-724 61-224 (312)
83 PRK07807 inosine 5-monophospha 94.9 0.13 2.8E-06 59.2 10.1 130 573-727 226-362 (479)
84 PRK11840 bifunctional sulfur c 94.9 0.1 2.2E-06 57.4 8.7 101 612-728 178-282 (326)
85 PF00290 Trp_syntA: Tryptophan 94.9 0.2 4.3E-06 53.6 10.7 151 546-730 74-232 (259)
86 TIGR00222 panB 3-methyl-2-oxob 94.9 0.22 4.8E-06 53.4 10.9 143 482-655 4-180 (263)
87 PRK02506 dihydroorotate dehydr 94.8 0.19 4.1E-06 54.6 10.6 168 479-654 77-269 (310)
88 PF04131 NanE: Putative N-acet 94.8 0.13 2.8E-06 52.8 8.6 181 504-745 3-188 (192)
89 cd02940 DHPD_FMN Dihydropyrimi 94.7 0.74 1.6E-05 49.6 14.7 158 552-725 92-282 (299)
90 PRK12738 kbaY tagatose-bisphos 94.7 0.84 1.8E-05 49.6 15.0 193 476-713 4-223 (286)
91 cd04741 DHOD_1A_like Dihydroor 94.7 0.54 1.2E-05 50.7 13.5 172 478-657 73-274 (294)
92 cd00947 TBP_aldolase_IIB Tagat 94.7 0.23 4.9E-06 53.6 10.6 167 507-714 31-218 (276)
93 COG0134 TrpC Indole-3-glycerol 94.7 0.14 3.1E-06 54.6 9.0 178 506-738 72-251 (254)
94 PRK13399 fructose-1,6-bisphosp 94.6 0.61 1.3E-05 51.9 13.8 158 507-701 36-235 (347)
95 COG2070 Dioxygenases related t 94.5 0.097 2.1E-06 57.7 7.5 100 617-727 116-216 (336)
96 TIGR03572 WbuZ glycosyl amidat 94.5 1.2 2.7E-05 45.7 15.0 75 638-727 156-230 (232)
97 cd00945 Aldolase_Class_I Class 94.4 0.93 2E-05 44.0 13.4 149 480-653 35-199 (201)
98 PRK13802 bifunctional indole-3 94.4 0.11 2.4E-06 62.3 8.2 172 505-731 75-247 (695)
99 PRK15063 isocitrate lyase; Pro 94.4 1.2 2.5E-05 51.0 15.7 106 482-591 52-179 (428)
100 PRK10558 alpha-dehydro-beta-de 94.4 1.6 3.4E-05 46.6 15.9 229 477-744 2-255 (256)
101 PRK09427 bifunctional indole-3 94.3 0.12 2.5E-06 59.3 7.9 178 506-739 76-254 (454)
102 PRK07998 gatY putative fructos 94.3 1.1 2.4E-05 48.7 14.8 171 506-721 35-226 (283)
103 PRK10128 2-keto-3-deoxy-L-rham 94.3 2.2 4.7E-05 46.0 16.8 228 481-747 5-258 (267)
104 TIGR00167 cbbA ketose-bisphosp 94.2 1.9 4.1E-05 46.9 16.2 168 507-713 36-227 (288)
105 PRK00278 trpC indole-3-glycero 94.0 0.59 1.3E-05 49.6 11.9 128 558-720 48-185 (260)
106 TIGR01036 pyrD_sub2 dihydrooro 93.9 4.3 9.4E-05 44.8 18.8 208 492-714 56-309 (335)
107 PRK07565 dihydroorotate dehydr 93.9 3.5 7.7E-05 45.1 18.0 155 492-659 101-272 (334)
108 PTZ00314 inosine-5'-monophosph 93.9 0.48 1E-05 54.9 11.7 160 472-658 204-376 (495)
109 TIGR01521 FruBisAldo_II_B fruc 93.9 1.1 2.4E-05 49.9 14.0 164 507-701 34-233 (347)
110 TIGR01304 IMP_DH_rel_2 IMP deh 93.8 1.1 2.5E-05 50.2 14.1 163 548-726 119-286 (369)
111 cd04732 HisA HisA. Phosphorib 93.8 2.1 4.5E-05 43.7 15.1 168 505-727 34-222 (234)
112 PRK07084 fructose-bisphosphate 93.8 1.2 2.6E-05 49.2 14.0 188 476-701 10-226 (321)
113 TIGR00742 yjbN tRNA dihydrouri 93.7 0.81 1.8E-05 50.1 12.6 155 558-724 53-223 (318)
114 TIGR02151 IPP_isom_2 isopenten 93.7 3.1 6.7E-05 45.8 17.1 202 492-726 53-285 (333)
115 PRK05286 dihydroorotate dehydr 93.7 0.43 9.3E-06 52.6 10.5 167 479-655 125-318 (344)
116 PF00478 IMPDH: IMP dehydrogen 93.7 0.9 1.9E-05 50.7 12.9 144 477-713 74-231 (352)
117 cd00956 Transaldolase_FSA Tran 93.7 0.27 5.8E-06 50.8 8.3 114 618-744 91-206 (211)
118 PRK06015 keto-hydroxyglutarate 93.6 0.72 1.6E-05 47.7 11.2 107 619-746 88-199 (201)
119 PF01261 AP_endonuc_2: Xylose 93.6 0.42 9E-06 46.4 9.1 69 642-716 78-155 (213)
120 cd04738 DHOD_2_like Dihydrooro 93.6 0.47 1E-05 51.8 10.5 170 479-657 115-311 (327)
121 PRK13125 trpA tryptophan synth 93.6 0.72 1.6E-05 48.3 11.4 70 634-722 86-156 (244)
122 PRK06806 fructose-bisphosphate 93.5 4.8 0.0001 43.6 17.8 179 507-729 36-235 (281)
123 PRK09195 gatY tagatose-bisphos 93.4 2.4 5.2E-05 46.1 15.3 184 488-713 13-223 (284)
124 TIGR02631 xylA_Arthro xylose i 93.3 1.7 3.6E-05 48.9 14.4 171 565-740 17-234 (382)
125 TIGR00262 trpA tryptophan synt 93.3 0.9 1.9E-05 48.3 11.7 92 604-716 62-164 (256)
126 PRK12857 fructose-1,6-bisphosp 93.3 3.2 6.8E-05 45.1 15.9 166 507-714 36-224 (284)
127 PLN02460 indole-3-glycerol-pho 93.2 0.32 6.9E-06 53.9 8.4 177 505-731 144-324 (338)
128 cd02911 arch_FMN Archeal FMN-b 93.2 1.3 2.8E-05 46.4 12.5 142 559-726 72-222 (233)
129 PRK09997 hydroxypyruvate isome 93.1 1.2 2.7E-05 46.2 12.2 137 573-715 15-168 (258)
130 PRK12595 bifunctional 3-deoxy- 92.9 0.81 1.8E-05 51.1 11.1 84 610-698 164-260 (360)
131 PRK08185 hypothetical protein; 92.8 2.4 5.2E-05 46.0 14.3 165 507-713 31-219 (283)
132 TIGR01858 tag_bisphos_ald clas 92.8 3.7 8.1E-05 44.6 15.7 165 507-713 34-221 (282)
133 PRK10415 tRNA-dihydrouridine s 92.7 3.3 7.3E-05 45.3 15.4 152 558-727 63-227 (321)
134 TIGR00693 thiE thiamine-phosph 92.7 1.4 3E-05 43.9 11.5 161 509-729 22-185 (196)
135 cd04739 DHOD_like Dihydroorota 92.7 1.9 4.1E-05 47.2 13.5 170 479-659 85-270 (325)
136 cd00946 FBP_aldolase_IIA Class 92.7 1.2 2.7E-05 49.6 12.1 181 507-713 34-266 (345)
137 PRK07315 fructose-bisphosphate 92.7 2 4.3E-05 46.8 13.4 200 507-741 36-248 (293)
138 PRK05437 isopentenyl pyrophosp 92.6 8.7 0.00019 42.7 18.6 207 491-727 59-293 (352)
139 PRK08091 ribulose-phosphate 3- 92.6 1.4 3E-05 46.5 11.8 170 553-745 6-225 (228)
140 PRK08649 inosine 5-monophospha 92.5 0.47 1E-05 53.1 8.7 101 620-727 179-288 (368)
141 TIGR00736 nifR3_rel_arch TIM-b 92.5 3.5 7.6E-05 43.5 14.6 152 480-654 55-219 (231)
142 PF01116 F_bP_aldolase: Fructo 92.5 3 6.6E-05 45.3 14.6 170 506-714 34-227 (287)
143 cd00564 TMP_TenI Thiamine mono 92.5 1.2 2.6E-05 43.2 10.6 121 578-730 64-184 (196)
144 PRK09196 fructose-1,6-bisphosp 92.5 2.7 5.9E-05 47.0 14.4 180 491-701 16-235 (347)
145 PRK13210 putative L-xylulose 5 92.4 2.8 6E-05 43.6 13.8 143 564-715 5-172 (284)
146 PRK06256 biotin synthase; Vali 92.4 17 0.00038 39.4 20.3 216 460-725 74-301 (336)
147 cd02801 DUS_like_FMN Dihydrour 92.4 1.5 3.2E-05 44.5 11.5 158 483-658 45-216 (231)
148 cd00019 AP2Ec AP endonuclease 92.3 1.7 3.6E-05 45.6 12.1 132 573-716 10-166 (279)
149 PRK05458 guanosine 5'-monophos 92.3 1.4 3E-05 48.7 11.9 144 487-658 79-233 (326)
150 TIGR00007 phosphoribosylformim 92.3 5.7 0.00012 40.6 15.6 170 505-727 33-221 (230)
151 TIGR00676 fadh2 5,10-methylene 92.2 1.9 4E-05 46.1 12.4 169 510-718 25-210 (272)
152 cd02922 FCB2_FMN Flavocytochro 92.1 4.2 9E-05 45.3 15.4 185 504-722 85-298 (344)
153 TIGR00736 nifR3_rel_arch TIM-b 92.1 2.2 4.8E-05 45.0 12.5 147 558-726 66-222 (231)
154 PF01081 Aldolase: KDPG and KH 92.0 0.55 1.2E-05 48.4 7.8 88 619-727 92-179 (196)
155 cd02803 OYE_like_FMN_family Ol 92.0 6.5 0.00014 42.4 16.4 159 474-654 129-310 (327)
156 cd02930 DCR_FMN 2,4-dienoyl-Co 92.0 4 8.6E-05 45.0 15.0 158 475-654 126-305 (353)
157 PF02219 MTHFR: Methylenetetra 91.9 1.6 3.4E-05 46.8 11.5 206 484-730 1-235 (287)
158 PRK08673 3-deoxy-7-phosphohept 91.8 1.2 2.5E-05 49.5 10.6 130 559-700 93-238 (335)
159 COG1902 NemA NADH:flavin oxido 91.8 1.5 3.2E-05 49.1 11.5 171 459-654 120-317 (363)
160 PRK09856 fructoselysine 3-epim 91.8 3.3 7.2E-05 43.1 13.5 129 574-716 14-172 (275)
161 cd04737 LOX_like_FMN L-Lactate 91.7 4.7 0.0001 45.0 15.3 177 505-722 94-303 (351)
162 PRK12737 gatY tagatose-bisphos 91.7 1.1 2.4E-05 48.6 10.1 166 507-714 36-224 (284)
163 PF01180 DHO_dh: Dihydroorotat 91.7 0.65 1.4E-05 49.6 8.3 173 478-658 77-276 (295)
164 PRK00748 1-(5-phosphoribosyl)- 91.7 4.4 9.5E-05 41.4 14.0 173 506-727 36-223 (233)
165 TIGR02814 pfaD_fam PfaD family 91.7 1.1 2.4E-05 51.5 10.5 95 619-727 158-256 (444)
166 PRK06552 keto-hydroxyglutarate 91.7 4.4 9.6E-05 42.1 14.1 150 480-686 53-209 (213)
167 PRK08610 fructose-bisphosphate 91.6 8.6 0.00019 42.0 16.7 184 490-713 15-224 (286)
168 COG0159 TrpA Tryptophan syntha 91.5 4.7 0.0001 43.6 14.4 171 544-745 79-261 (265)
169 COG0042 tRNA-dihydrouridine sy 91.4 1.4 3E-05 48.5 10.6 158 558-732 65-236 (323)
170 cd04722 TIM_phosphate_binding 91.1 3.6 7.9E-05 39.1 12.0 145 481-654 48-198 (200)
171 TIGR01037 pyrD_sub1_fam dihydr 90.9 2.6 5.6E-05 45.1 11.9 175 478-662 75-270 (300)
172 PRK07695 transcriptional regul 90.8 2.1 4.6E-05 43.2 10.5 101 628-743 95-197 (201)
173 PRK02083 imidazole glycerol ph 90.7 19 0.0004 37.8 17.8 87 638-739 156-244 (253)
174 TIGR00640 acid_CoA_mut_C methy 90.7 3.2 6.8E-05 40.1 11.1 86 636-743 40-127 (132)
175 TIGR01036 pyrD_sub2 dihydrooro 90.7 1.9 4.1E-05 47.6 10.8 166 479-655 122-317 (335)
176 PRK09989 hypothetical protein; 90.6 3.6 7.9E-05 42.7 12.4 165 574-748 16-205 (258)
177 cd02940 DHPD_FMN Dihydropyrimi 90.5 5.7 0.00012 42.8 14.1 162 492-660 99-286 (299)
178 COG3010 NanE Putative N-acetyl 90.4 1.2 2.7E-05 46.5 8.5 183 504-744 37-223 (229)
179 TIGR01334 modD putative molybd 90.4 2.2 4.8E-05 46.2 10.8 197 497-725 43-264 (277)
180 PRK13398 3-deoxy-7-phosphohept 90.1 2.2 4.7E-05 45.8 10.4 130 559-700 27-172 (266)
181 KOG1606 Stationary phase-induc 90.1 1.7 3.7E-05 45.7 9.2 208 483-745 14-263 (296)
182 PRK14057 epimerase; Provisiona 90.0 4.4 9.5E-05 43.6 12.5 170 553-745 13-239 (254)
183 PLN02334 ribulose-phosphate 3- 89.8 17 0.00036 37.7 16.4 173 507-729 27-207 (229)
184 PRK09140 2-dehydro-3-deoxy-6-p 89.8 2.9 6.3E-05 43.2 10.7 105 619-745 95-201 (206)
185 TIGR01520 FruBisAldo_II_A fruc 89.7 11 0.00024 42.5 15.6 217 470-713 5-278 (357)
186 COG2185 Sbm Methylmalonyl-CoA 89.5 3 6.5E-05 41.3 9.9 92 633-745 47-139 (143)
187 cd04734 OYE_like_3_FMN Old yel 89.4 39 0.00084 37.5 20.6 80 641-731 234-322 (343)
188 PRK05458 guanosine 5'-monophos 89.2 1.5 3.3E-05 48.4 8.7 144 561-728 85-234 (326)
189 PRK09920 acetyl-CoA:acetoacety 89.1 2.3 4.9E-05 44.6 9.4 127 207-337 16-157 (219)
190 TIGR02311 HpaI 2,4-dihydroxyhe 88.8 9.1 0.0002 40.6 13.8 37 484-520 2-40 (249)
191 PF00478 IMPDH: IMP dehydrogen 88.8 5.2 0.00011 44.9 12.4 125 559-722 37-175 (352)
192 TIGR00875 fsa_talC_mipB fructo 88.8 1.3 2.9E-05 46.0 7.4 114 618-744 91-210 (213)
193 KOG4201 Anthranilate synthase 88.7 1.5 3.3E-05 46.2 7.7 186 504-739 95-282 (289)
194 PRK13523 NADPH dehydrogenase N 88.7 11 0.00023 41.8 14.8 153 475-654 131-304 (337)
195 PRK07114 keto-hydroxyglutarate 88.6 3.3 7.1E-05 43.5 10.2 103 619-743 103-212 (222)
196 PRK07709 fructose-bisphosphate 88.6 2.3 5.1E-05 46.2 9.4 168 507-714 36-225 (285)
197 PTZ00372 endonuclease 4-like p 88.5 26 0.00056 40.3 17.9 200 470-744 107-333 (413)
198 cd04729 NanE N-acetylmannosami 88.5 10 0.00022 38.8 13.6 121 505-656 84-207 (219)
199 TIGR03234 OH-pyruv-isom hydrox 88.5 4.6 0.0001 41.6 11.2 137 573-715 14-167 (254)
200 PRK13307 bifunctional formalde 88.3 13 0.00027 42.4 15.2 133 558-727 225-361 (391)
201 cd04741 DHOD_1A_like Dihydroor 88.3 27 0.00059 37.8 17.2 202 507-727 27-275 (294)
202 PRK07028 bifunctional hexulose 88.2 2.6 5.6E-05 47.7 9.9 119 577-729 72-195 (430)
203 PRK09722 allulose-6-phosphate 88.2 11 0.00025 39.7 13.9 152 561-726 4-199 (229)
204 PRK12331 oxaloacetate decarbox 88.2 9.1 0.0002 44.2 14.2 113 549-685 65-195 (448)
205 PRK08649 inosine 5-monophospha 88.2 5.4 0.00012 44.8 12.2 167 558-743 46-245 (368)
206 PRK05835 fructose-bisphosphate 87.9 20 0.00043 39.6 16.0 155 506-701 34-213 (307)
207 TIGR02429 pcaI_scoA_fam 3-oxoa 87.9 2.8 6E-05 44.0 9.1 128 207-337 17-160 (222)
208 PRK08255 salicylyl-CoA 5-hydro 87.7 21 0.00045 43.6 17.6 80 641-731 644-724 (765)
209 PRK12656 fructose-6-phosphate 87.6 2.8 6E-05 44.1 8.9 116 618-746 95-216 (222)
210 PRK08883 ribulose-phosphate 3- 87.5 6.2 0.00013 41.2 11.4 167 566-745 6-217 (220)
211 PRK08745 ribulose-phosphate 3- 87.5 13 0.00028 39.1 13.8 168 562-745 6-217 (223)
212 PRK14024 phosphoribosyl isomer 87.4 16 0.00034 38.4 14.4 192 506-738 38-238 (241)
213 cd00381 IMPDH IMPDH: The catal 87.3 15 0.00033 40.4 14.8 155 548-743 22-193 (325)
214 PRK01362 putative translaldola 87.2 2.1 4.5E-05 44.7 7.7 115 618-745 91-211 (214)
215 PRK06852 aldolase; Validated 86.8 5.6 0.00012 43.8 11.0 163 553-741 86-288 (304)
216 cd04735 OYE_like_4_FMN Old yel 86.7 3.9 8.5E-05 45.2 10.0 133 580-725 151-314 (353)
217 TIGR03239 GarL 2-dehydro-3-deo 86.7 24 0.00053 37.5 15.4 222 484-744 2-248 (249)
218 TIGR03217 4OH_2_O_val_ald 4-hy 86.6 21 0.00047 39.5 15.5 168 474-699 19-195 (333)
219 PRK14040 oxaloacetate decarbox 86.5 15 0.00032 43.9 15.1 148 505-686 32-197 (593)
220 PTZ00314 inosine-5'-monophosph 86.5 2.7 5.8E-05 48.8 8.9 140 562-727 230-376 (495)
221 PLN02535 glycolate oxidase 86.3 25 0.00055 39.7 16.0 172 504-714 93-299 (364)
222 COG1082 IolE Sugar phosphate i 86.2 10 0.00022 39.0 12.2 130 571-714 13-166 (274)
223 cd06557 KPHMT-like Ketopantoat 86.0 3.2 6.8E-05 44.5 8.5 97 620-723 3-110 (254)
224 cd02811 IDI-2_FMN Isopentenyl- 86.0 10 0.00022 41.6 12.7 151 559-725 112-285 (326)
225 cd08210 RLP_RrRLP Ribulose bis 86.0 19 0.0004 40.6 14.8 120 464-598 100-231 (364)
226 CHL00200 trpA tryptophan synth 85.9 12 0.00026 40.2 12.8 91 604-716 67-168 (263)
227 TIGR02660 nifV_homocitr homoci 85.8 7 0.00015 43.5 11.4 138 574-729 24-167 (365)
228 PRK08508 biotin synthase; Prov 85.8 55 0.0012 35.2 19.0 203 473-723 37-249 (279)
229 smart00518 AP2Ec AP endonuclea 85.8 13 0.00029 38.6 12.8 126 575-716 12-163 (273)
230 PRK07455 keto-hydroxyglutarate 85.7 3.4 7.4E-05 41.9 8.2 119 560-724 12-134 (187)
231 PRK08318 dihydropyrimidine deh 85.6 12 0.00026 42.2 13.2 162 492-660 99-287 (420)
232 cd00537 MTHFR Methylenetetrahy 85.2 14 0.00031 39.1 12.9 166 510-715 25-211 (274)
233 TIGR03700 mena_SCO4494 putativ 85.2 29 0.00063 38.4 15.7 99 574-703 148-252 (351)
234 TIGR02708 L_lactate_ox L-lacta 85.2 11 0.00024 42.6 12.5 178 504-722 101-310 (367)
235 cd00453 FTBP_aldolase_II Fruct 85.1 41 0.00088 37.9 16.6 187 507-714 31-264 (340)
236 cd03174 DRE_TIM_metallolyase D 84.9 38 0.00082 35.0 15.6 106 576-699 77-197 (265)
237 cd04736 MDH_FMN Mandelate dehy 84.9 19 0.00042 40.5 14.2 118 611-745 222-346 (361)
238 PF00809 Pterin_bind: Pterin b 84.8 6.8 0.00015 40.3 10.0 93 640-744 24-116 (210)
239 PRK05848 nicotinate-nucleotide 84.6 6.8 0.00015 42.4 10.2 196 498-727 42-260 (273)
240 PRK07807 inosine 5-monophospha 84.5 7.5 0.00016 45.2 11.2 156 471-654 190-358 (479)
241 TIGR00433 bioB biotin syntheta 84.3 60 0.0013 34.4 20.7 127 576-710 123-260 (296)
242 PRK13366 protocatechuate 4,5-d 84.1 4.5 9.8E-05 43.9 8.7 178 220-421 33-236 (284)
243 PRK00311 panB 3-methyl-2-oxobu 84.0 4.8 0.0001 43.4 8.7 98 618-722 4-112 (264)
244 cd08601 GDPD_SaGlpQ_like Glyce 83.9 5.4 0.00012 41.6 9.0 90 543-655 156-246 (256)
245 PRK08654 pyruvate carboxylase 83.9 21 0.00046 41.5 14.6 154 506-687 18-189 (499)
246 PRK07455 keto-hydroxyglutarate 83.8 16 0.00035 37.1 12.0 113 572-727 71-183 (187)
247 cd00429 RPE Ribulose-5-phospha 83.5 21 0.00046 35.4 12.6 123 563-714 3-127 (211)
248 cd00311 TIM Triosephosphate is 83.3 2.8 6E-05 44.5 6.6 162 496-728 66-233 (242)
249 PRK05581 ribulose-phosphate 3- 83.2 9.3 0.0002 38.6 10.1 124 562-714 6-131 (220)
250 PRK04180 pyridoxal biosynthesi 83.1 4 8.7E-05 44.6 7.8 179 502-727 26-237 (293)
251 cd01311 PDC_hydrolase 2-pyrone 83.0 13 0.00029 38.9 11.5 145 539-714 53-206 (263)
252 PF01729 QRPTase_C: Quinolinat 83.0 4.2 9.1E-05 41.0 7.4 141 554-726 9-157 (169)
253 cd06298 PBP1_CcpA_like Ligand- 82.8 28 0.00061 34.9 13.3 118 222-365 134-261 (268)
254 cd07939 DRE_TIM_NifV Streptomy 82.7 14 0.0003 39.0 11.4 140 573-730 20-165 (259)
255 PRK06096 molybdenum transport 82.6 11 0.00023 41.2 10.8 85 620-725 179-265 (284)
256 PRK08591 acetyl-CoA carboxylas 82.5 28 0.00061 39.3 14.5 166 495-686 7-188 (451)
257 cd04732 HisA HisA. Phosphorib 82.4 13 0.00028 37.9 10.9 156 479-661 62-225 (234)
258 PRK08195 4-hyroxy-2-oxovalerat 82.4 56 0.0012 36.3 16.5 166 475-699 21-196 (337)
259 COG3836 HpcH 2,4-dihydroxyhept 82.3 40 0.00088 36.3 14.4 168 483-724 6-175 (255)
260 PF07302 AroM: AroM protein; 82.3 9.9 0.00021 40.2 10.0 112 475-656 66-186 (221)
261 CHL00162 thiG thiamin biosynth 82.2 8.5 0.00019 41.6 9.6 96 618-729 124-223 (267)
262 TIGR01305 GMP_reduct_1 guanosi 82.1 8.3 0.00018 43.2 9.8 113 576-713 109-232 (343)
263 PRK14567 triosephosphate isome 82.1 3.5 7.6E-05 44.2 6.8 161 492-728 63-236 (253)
264 cd00452 KDPG_aldolase KDPG and 82.1 22 0.00047 35.8 12.1 122 559-725 3-127 (190)
265 cd01573 modD_like ModD; Quinol 82.0 8.7 0.00019 41.4 9.8 92 613-725 166-259 (272)
266 TIGR03699 mena_SCO4550 menaqui 82.0 51 0.0011 36.0 15.9 143 567-720 135-294 (340)
267 cd04731 HisF The cyclase subun 81.9 30 0.00065 35.9 13.5 159 480-679 61-240 (243)
268 PF01207 Dus: Dihydrouridine s 81.9 3 6.5E-05 45.4 6.4 173 536-726 27-215 (309)
269 PRK01130 N-acetylmannosamine-6 81.9 4.2 9.1E-05 41.6 7.1 94 478-591 107-200 (221)
270 PRK12677 xylose isomerase; Pro 81.7 30 0.00065 39.2 14.2 167 567-740 18-233 (384)
271 TIGR03551 F420_cofH 7,8-dideme 81.3 92 0.002 34.3 18.5 173 543-723 102-300 (343)
272 TIGR00259 thylakoid_BtpA membr 81.2 7.8 0.00017 41.7 9.0 194 477-729 22-232 (257)
273 PLN02389 biotin synthase 81.2 88 0.0019 35.5 17.6 161 544-724 153-329 (379)
274 PRK09197 fructose-bisphosphate 80.6 12 0.00026 42.1 10.5 211 477-713 5-270 (350)
275 cd08607 GDPD_GDE5 Glycerophosp 80.3 6.7 0.00014 41.7 8.2 36 619-654 249-287 (290)
276 PRK07428 nicotinate-nucleotide 80.2 6.1 0.00013 43.1 7.9 201 497-726 53-273 (288)
277 PF02514 CobN-Mg_chel: CobN/Ma 80.2 8.1 0.00017 49.2 10.0 145 207-363 69-256 (1098)
278 cd06306 PBP1_TorT-like TorT-li 80.0 75 0.0016 32.5 17.0 65 224-300 18-87 (268)
279 TIGR00423 radical SAM domain p 79.6 97 0.0021 33.6 17.9 139 575-723 106-264 (309)
280 PRK12653 fructose-6-phosphate 79.6 7.4 0.00016 40.9 8.1 115 618-745 93-213 (220)
281 TIGR02090 LEU1_arch isopropylm 79.6 19 0.00041 40.2 11.7 138 573-728 22-165 (363)
282 cd02932 OYE_YqiM_FMN Old yello 79.6 30 0.00065 37.9 13.1 154 475-653 143-318 (336)
283 cd00959 DeoC 2-deoxyribose-5-p 79.3 33 0.00071 35.0 12.5 113 577-714 73-195 (203)
284 COG0157 NadC Nicotinate-nucleo 79.3 16 0.00034 40.0 10.5 83 619-723 176-261 (280)
285 TIGR00587 nfo apurinic endonuc 79.1 40 0.00086 35.9 13.5 151 575-744 13-202 (274)
286 PRK11858 aksA trans-homoaconit 78.8 20 0.00042 40.3 11.6 138 574-729 27-170 (378)
287 cd02071 MM_CoA_mut_B12_BD meth 78.8 11 0.00023 35.4 8.2 70 639-726 40-111 (122)
288 COG1646 Predicted phosphate-bi 78.6 1.8 4E-05 45.9 3.3 44 611-654 175-219 (240)
289 TIGR01306 GMP_reduct_2 guanosi 78.4 23 0.00049 39.4 11.7 140 487-654 76-226 (321)
290 PLN02495 oxidoreductase, actin 78.4 69 0.0015 36.5 15.7 169 479-657 98-301 (385)
291 cd04747 OYE_like_5_FMN Old yel 78.2 89 0.0019 35.2 16.4 94 475-588 133-250 (361)
292 cd07937 DRE_TIM_PC_TC_5S Pyruv 78.1 44 0.00095 35.9 13.5 90 551-655 62-169 (275)
293 PF01136 Peptidase_U32: Peptid 78.0 9.5 0.00021 39.0 8.2 86 574-700 3-94 (233)
294 TIGR01142 purT phosphoribosylg 78.0 27 0.00058 38.2 12.2 59 624-684 109-170 (380)
295 cd02809 alpha_hydroxyacid_oxid 77.9 6.3 0.00014 42.5 7.2 92 480-591 162-254 (299)
296 COG1830 FbaB DhnA-type fructos 77.7 11 0.00023 41.0 8.6 126 558-713 76-224 (265)
297 TIGR00735 hisF imidazoleglycer 77.7 57 0.0012 34.4 14.0 161 479-680 63-247 (254)
298 PF00834 Ribul_P_3_epim: Ribul 77.6 7.4 0.00016 40.2 7.3 152 563-727 3-197 (201)
299 PF01180 DHO_dh: Dihydroorotat 77.6 13 0.00029 39.8 9.5 189 510-714 32-265 (295)
300 PRK12655 fructose-6-phosphate 77.5 9.2 0.0002 40.2 8.0 116 618-746 93-214 (220)
301 cd04735 OYE_like_4_FMN Old yel 77.5 10 0.00023 41.9 8.9 154 475-654 133-312 (353)
302 TIGR00715 precor6x_red precorr 77.4 6.5 0.00014 42.1 7.0 76 216-300 5-98 (256)
303 PF13407 Peripla_BP_4: Peripla 77.4 84 0.0018 31.6 15.9 169 212-425 1-179 (257)
304 PRK13209 L-xylulose 5-phosphat 77.4 51 0.0011 34.6 13.6 130 573-715 21-177 (283)
305 cd02931 ER_like_FMN Enoate red 77.3 28 0.00062 39.1 12.3 171 461-654 121-334 (382)
306 PLN02540 methylenetetrahydrofo 77.0 53 0.0012 39.3 14.8 158 544-730 44-232 (565)
307 PRK07107 inosine 5-monophospha 76.9 20 0.00043 42.0 11.3 132 557-712 229-371 (502)
308 TIGR01306 GMP_reduct_2 guanosi 76.8 13 0.00029 41.2 9.4 132 560-725 83-228 (321)
309 cd04726 KGPDC_HPS 3-Keto-L-gul 76.5 17 0.00037 36.2 9.3 86 618-721 41-132 (202)
310 TIGR01361 DAHP_synth_Bsub phos 76.3 10 0.00022 40.5 8.2 127 560-698 26-167 (260)
311 cd00439 Transaldolase Transald 76.0 13 0.00028 39.7 8.8 90 618-709 129-223 (252)
312 PRK13017 dihydroxy-acid dehydr 75.8 6.2 0.00013 47.0 6.8 277 208-610 46-364 (596)
313 PRK13396 3-deoxy-7-phosphohept 75.8 16 0.00035 41.1 9.7 125 562-700 104-245 (352)
314 PRK09250 fructose-bisphosphate 75.7 10 0.00022 42.6 8.0 125 579-714 152-303 (348)
315 PLN02858 fructose-bisphosphate 75.7 13 0.00028 48.5 10.2 169 506-713 1131-1322(1378)
316 TIGR00007 phosphoribosylformim 75.6 29 0.00063 35.5 11.0 148 479-659 61-222 (230)
317 cd08564 GDPD_GsGDE_like Glycer 75.5 13 0.00028 39.2 8.6 91 545-655 160-255 (265)
318 PLN02746 hydroxymethylglutaryl 75.5 8.9 0.00019 42.9 7.7 78 633-712 119-200 (347)
319 cd00405 PRAI Phosphoribosylant 75.4 45 0.00097 33.7 12.1 177 505-737 11-194 (203)
320 COG0439 AccC Biotin carboxylas 75.0 33 0.00072 39.8 12.2 141 545-694 40-198 (449)
321 TIGR01305 GMP_reduct_1 guanosi 74.9 31 0.00067 38.8 11.5 125 559-722 45-176 (343)
322 cd01545 PBP1_SalR Ligand-bindi 74.8 97 0.0021 31.1 14.6 183 111-354 54-251 (270)
323 PRK13957 indole-3-glycerol-pho 74.6 56 0.0012 35.2 13.0 127 559-720 40-176 (247)
324 TIGR03550 F420_cofG 7,8-dideme 74.6 22 0.00047 38.9 10.3 144 541-715 35-187 (322)
325 cd07941 DRE_TIM_LeuA3 Desulfob 74.5 72 0.0016 34.2 13.9 136 574-728 21-175 (273)
326 TIGR01769 GGGP geranylgeranylg 74.1 79 0.0017 33.1 13.7 140 566-723 30-204 (205)
327 cd04733 OYE_like_2_FMN Old yel 74.1 20 0.00044 39.3 9.9 134 580-721 156-319 (338)
328 cd02803 OYE_like_FMN_family Ol 74.0 35 0.00075 36.8 11.6 85 636-727 225-314 (327)
329 PRK07114 keto-hydroxyglutarate 73.9 91 0.002 33.0 14.2 199 393-684 10-217 (222)
330 PRK04180 pyridoxal biosynthesi 73.8 74 0.0016 35.2 13.8 165 478-689 62-257 (293)
331 TIGR03249 KdgD 5-dehydro-4-deo 73.8 7.5 0.00016 41.8 6.5 99 476-592 58-163 (296)
332 cd04733 OYE_like_2_FMN Old yel 73.8 1.5E+02 0.0032 32.7 16.7 153 475-654 138-321 (338)
333 PRK07360 FO synthase subunit 2 73.7 65 0.0014 36.1 13.9 58 573-633 160-219 (371)
334 PRK07998 gatY putative fructos 73.5 91 0.002 34.2 14.5 139 571-723 2-182 (283)
335 PLN02826 dihydroorotate dehydr 73.3 33 0.00071 39.3 11.6 156 495-662 188-377 (409)
336 PRK15108 biotin synthase; Prov 73.1 20 0.00044 39.7 9.7 137 571-718 74-212 (345)
337 COG0800 Eda 2-keto-3-deoxy-6-p 73.1 17 0.00036 38.3 8.5 87 619-727 97-184 (211)
338 TIGR03569 NeuB_NnaB N-acetylne 73.0 36 0.00077 38.0 11.5 58 598-655 58-116 (329)
339 cd02911 arch_FMN Archeal FMN-b 73.0 40 0.00088 35.4 11.4 138 492-654 72-219 (233)
340 PF01070 FMN_dh: FMN-dependent 72.9 6.1 0.00013 44.1 5.7 85 612-714 212-301 (356)
341 TIGR00874 talAB transaldolase. 72.7 16 0.00034 40.6 8.6 91 618-710 138-233 (317)
342 PRK04165 acetyl-CoA decarbonyl 72.5 16 0.00035 42.4 9.0 139 479-655 144-297 (450)
343 TIGR00737 nifR3_yhdG putative 72.5 67 0.0015 35.0 13.4 153 490-657 60-224 (319)
344 TIGR03128 RuMP_HxlA 3-hexulose 72.4 28 0.0006 35.0 9.8 61 637-714 63-125 (206)
345 cd00957 Transaldolase_TalAB Tr 72.3 16 0.00035 40.4 8.6 91 618-710 138-233 (313)
346 PRK09989 hypothetical protein; 72.2 22 0.00048 37.0 9.3 94 605-699 6-107 (258)
347 PRK12595 bifunctional 3-deoxy- 72.0 1.8E+02 0.0039 32.9 18.8 268 375-689 42-357 (360)
348 PRK13016 dihydroxy-acid dehydr 71.9 6.6 0.00014 46.6 5.8 274 208-610 41-358 (577)
349 PRK12309 transaldolase/EF-hand 71.9 20 0.00044 40.7 9.5 145 542-710 78-239 (391)
350 cd06319 PBP1_ABC_sugar_binding 71.6 1.2E+02 0.0026 30.7 17.9 100 222-353 16-119 (277)
351 TIGR02712 urea_carbox urea car 71.5 58 0.0013 42.2 14.3 116 568-687 55-187 (1201)
352 cd02812 PcrB_like PcrB_like pr 71.4 15 0.00032 38.8 7.7 79 636-731 132-211 (219)
353 PRK10936 TMAO reductase system 71.4 1.5E+02 0.0034 32.0 15.8 82 208-301 45-135 (343)
354 TIGR00514 accC acetyl-CoA carb 71.3 87 0.0019 35.6 14.4 163 495-686 7-188 (449)
355 PRK08057 cobalt-precorrin-6x r 71.1 16 0.00034 39.1 7.9 76 216-300 7-98 (248)
356 PRK06131 dihydroxy-acid dehydr 71.0 6.7 0.00015 46.5 5.6 273 209-610 38-353 (571)
357 cd00958 DhnA Class I fructose- 70.9 77 0.0017 32.6 12.8 137 571-745 74-232 (235)
358 PRK10355 xylF D-xylose transpo 70.6 15 0.00032 39.7 7.8 83 207-300 23-112 (330)
359 TIGR01108 oadA oxaloacetate de 70.6 36 0.00078 40.7 11.5 113 548-684 59-189 (582)
360 PLN03228 methylthioalkylmalate 70.5 59 0.0013 38.3 13.0 126 560-699 156-293 (503)
361 PRK00911 dihydroxy-acid dehydr 70.5 10 0.00022 45.0 6.8 281 207-610 29-352 (552)
362 PF04055 Radical_SAM: Radical 70.4 9.7 0.00021 35.0 5.6 127 572-713 27-164 (166)
363 PRK08462 biotin carboxylase; V 70.2 1E+02 0.0023 34.8 14.7 149 505-682 19-186 (445)
364 cd01568 QPRTase_NadC Quinolina 70.0 29 0.00063 37.3 9.7 192 497-725 39-256 (269)
365 COG0800 Eda 2-keto-3-deoxy-6-p 69.9 71 0.0015 33.8 12.2 166 393-657 8-181 (211)
366 PRK06256 biotin synthase; Vali 69.9 14 0.00031 40.1 7.5 74 635-714 149-224 (336)
367 cd08555 PI-PLCc_GDPD_SF Cataly 69.9 5.7 0.00012 39.4 4.1 36 619-654 140-177 (179)
368 cd08205 RuBisCO_IV_RLP Ribulos 69.6 1E+02 0.0023 34.7 14.3 120 464-598 104-236 (367)
369 PRK05692 hydroxymethylglutaryl 69.5 37 0.00081 36.8 10.5 123 574-714 27-163 (287)
370 TIGR02025 BchH magnesium chela 69.4 21 0.00045 46.1 9.8 152 208-364 238-424 (1216)
371 cd06348 PBP1_ABC_ligand_bindin 69.2 1.3E+02 0.0028 32.0 14.5 70 222-303 21-99 (344)
372 PRK07094 biotin synthase; Prov 69.1 1.7E+02 0.0038 31.6 17.0 166 544-725 103-281 (323)
373 PRK08385 nicotinate-nucleotide 69.1 23 0.0005 38.6 8.8 192 497-725 41-260 (278)
374 PF00682 HMGL-like: HMGL-like 69.1 68 0.0015 33.0 11.9 65 561-631 56-124 (237)
375 PRK12346 transaldolase A; Prov 68.9 21 0.00045 39.7 8.5 90 618-709 139-233 (316)
376 PRK13111 trpA tryptophan synth 68.9 41 0.0009 36.1 10.6 92 609-722 68-169 (258)
377 cd07948 DRE_TIM_HCS Saccharomy 68.8 57 0.0012 34.9 11.6 124 573-714 22-149 (262)
378 cd00377 ICL_PEPM Members of th 68.8 27 0.00059 36.9 9.1 57 641-698 90-148 (243)
379 PRK11197 lldD L-lactate dehydr 68.2 11 0.00024 42.7 6.4 91 611-714 231-321 (381)
380 cd06282 PBP1_GntR_like_2 Ligan 68.2 1.3E+02 0.0029 29.9 15.2 66 223-300 17-85 (266)
381 cd06305 PBP1_methylthioribose_ 68.1 1.4E+02 0.003 30.1 15.5 67 222-300 16-86 (273)
382 cd06297 PBP1_LacI_like_12 Liga 68.0 26 0.00057 35.8 8.6 77 212-300 2-84 (269)
383 TIGR01303 IMP_DH_rel_1 IMP deh 67.9 45 0.00098 38.9 11.4 89 638-745 227-326 (475)
384 TIGR00110 ilvD dihydroxy-acid 67.9 12 0.00025 44.3 6.7 279 207-610 9-333 (535)
385 TIGR00677 fadh2_euk methylenet 67.9 75 0.0016 34.5 12.4 164 511-718 27-214 (281)
386 cd02808 GltS_FMN Glutamate syn 67.9 13 0.00029 41.9 7.0 62 457-522 182-247 (392)
387 PRK15108 biotin synthase; Prov 67.8 2.1E+02 0.0045 32.0 18.9 146 568-725 129-288 (345)
388 PLN03069 magnesiumprotoporphyr 67.8 24 0.00051 45.7 9.8 153 207-364 264-451 (1220)
389 cd07949 PCA_45_Doxase_B_like_1 67.7 24 0.00053 38.1 8.6 120 288-421 106-235 (276)
390 PRK09549 mtnW 2,3-diketo-5-met 67.7 59 0.0013 37.4 12.0 246 464-748 108-406 (407)
391 PRK13587 1-(5-phosphoribosyl)- 67.6 68 0.0015 33.7 11.7 141 479-654 65-220 (234)
392 PRK12833 acetyl-CoA carboxylas 67.5 1.7E+02 0.0036 33.8 15.7 151 505-683 20-188 (467)
393 PRK10481 hypothetical protein; 67.4 24 0.00053 37.3 8.3 36 475-527 69-104 (224)
394 PF03437 BtpA: BtpA family; I 67.2 32 0.00069 37.1 9.3 196 477-729 23-232 (254)
395 TIGR00433 bioB biotin syntheta 67.2 29 0.00062 36.8 9.0 88 621-713 104-194 (296)
396 PF04481 DUF561: Protein of un 67.0 25 0.00055 37.5 8.2 186 505-745 32-235 (242)
397 TIGR00419 tim triosephosphate 67.0 40 0.00086 35.2 9.7 153 562-726 33-200 (205)
398 PF01884 PcrB: PcrB family; I 66.9 5.5 0.00012 42.2 3.5 46 609-654 160-210 (230)
399 cd06281 PBP1_LacI_like_5 Ligan 66.8 53 0.0012 33.3 10.5 65 223-300 17-85 (269)
400 COG0149 TpiA Triosephosphate i 66.8 39 0.00084 36.5 9.8 179 541-729 18-237 (251)
401 TIGR01302 IMP_dehydrog inosine 66.6 35 0.00076 39.2 10.1 67 636-721 224-290 (450)
402 cd00952 CHBPH_aldolase Trans-o 66.5 15 0.00032 40.1 6.8 100 475-592 60-170 (309)
403 PF02548 Pantoate_transf: Keto 66.5 7.2 0.00016 42.2 4.3 77 480-565 3-83 (261)
404 PRK13397 3-deoxy-7-phosphohept 66.4 65 0.0014 34.8 11.3 126 561-698 17-157 (250)
405 TIGR00674 dapA dihydrodipicoli 66.4 16 0.00035 39.0 7.0 91 475-584 50-150 (285)
406 PRK05096 guanosine 5'-monophos 66.1 29 0.00063 39.1 8.9 87 618-712 139-232 (346)
407 PRK08072 nicotinate-nucleotide 66.0 53 0.0011 35.8 10.7 192 498-725 46-261 (277)
408 TIGR01163 rpe ribulose-phospha 65.8 54 0.0012 32.7 10.2 122 565-714 4-126 (210)
409 TIGR03572 WbuZ glycosyl amidat 65.7 82 0.0018 32.4 11.7 142 479-654 63-226 (232)
410 PRK09426 methylmalonyl-CoA mut 65.7 41 0.00089 41.2 10.9 85 637-743 621-707 (714)
411 cd00954 NAL N-Acetylneuraminic 65.7 16 0.00035 39.1 6.8 93 475-584 53-154 (288)
412 cd00465 URO-D_CIMS_like The UR 65.3 50 0.0011 35.0 10.4 97 592-700 101-209 (306)
413 TIGR00674 dapA dihydrodipicoli 65.3 89 0.0019 33.4 12.3 126 575-722 21-158 (285)
414 PRK08508 biotin synthase; Prov 65.3 66 0.0014 34.5 11.3 126 573-715 40-175 (279)
415 TIGR00343 pyridoxal 5'-phospha 65.2 1.1E+02 0.0024 33.7 12.9 145 480-660 57-233 (287)
416 COG1646 Predicted phosphate-bi 65.0 16 0.00034 39.2 6.3 56 685-745 184-239 (240)
417 cd03332 LMO_FMN L-Lactate 2-mo 64.9 15 0.00032 41.8 6.5 119 612-745 240-365 (383)
418 PTZ00411 transaldolase-like pr 64.8 36 0.00077 38.1 9.4 145 542-710 84-245 (333)
419 TIGR00683 nanA N-acetylneurami 64.5 19 0.0004 38.9 7.0 74 476-563 54-132 (290)
420 PLN02274 inosine-5'-monophosph 64.5 23 0.00049 41.6 8.2 67 636-721 248-314 (505)
421 cd08572 GDPD_GDE5_like Glycero 64.4 11 0.00024 40.7 5.2 96 539-654 184-290 (293)
422 cd02811 IDI-2_FMN Isopentenyl- 64.4 22 0.00048 39.1 7.7 43 480-522 165-211 (326)
423 PTZ00170 D-ribulose-5-phosphat 64.3 28 0.0006 36.4 8.1 121 563-712 10-134 (228)
424 TIGR02313 HpaI-NOT-DapA 2,4-di 64.3 16 0.00034 39.5 6.5 102 474-592 51-163 (294)
425 TIGR00542 hxl6Piso_put hexulos 63.9 1.5E+02 0.0033 31.1 13.6 132 572-715 15-172 (279)
426 cd08574 GDPD_GDE_2_3_6 Glycero 63.9 8.3 0.00018 40.5 4.2 36 619-654 214-250 (252)
427 TIGR01501 MthylAspMutase methy 63.6 83 0.0018 30.9 10.6 93 630-741 33-130 (134)
428 TIGR03586 PseI pseudaminic aci 63.6 70 0.0015 35.7 11.3 54 602-655 64-117 (327)
429 PRK05567 inosine 5'-monophosph 63.4 22 0.00048 41.2 7.8 89 636-743 228-327 (486)
430 PRK08463 acetyl-CoA carboxylas 63.3 1.9E+02 0.004 33.5 15.1 151 504-683 16-185 (478)
431 cd08177 MAR Maleylacetate redu 63.3 8.8 0.00019 42.0 4.4 41 110-152 74-114 (337)
432 cd01424 MGS_CPS_II Methylglyox 63.2 19 0.0004 33.0 5.8 64 230-300 38-101 (110)
433 COG0129 IlvD Dihydroxyacid deh 63.2 20 0.00044 42.6 7.4 284 207-611 40-365 (575)
434 TIGR00035 asp_race aspartate r 63.0 59 0.0013 33.7 10.1 26 564-589 120-145 (229)
435 PLN00106 malate dehydrogenase 62.7 36 0.00077 37.7 8.9 93 645-743 83-179 (323)
436 PRK05269 transaldolase B; Prov 62.5 24 0.00052 39.1 7.5 148 542-710 74-235 (318)
437 cd07943 DRE_TIM_HOA 4-hydroxy- 62.2 1.9E+02 0.0041 30.6 13.9 85 552-654 67-160 (263)
438 PRK12448 dihydroxy-acid dehydr 62.1 14 0.00031 44.1 6.1 376 207-705 31-486 (615)
439 PRK13405 bchH magnesium chelat 62.1 29 0.00062 44.9 9.0 90 208-301 245-344 (1209)
440 cd00959 DeoC 2-deoxyribose-5-p 62.1 73 0.0016 32.5 10.4 142 479-652 38-200 (203)
441 PRK02227 hypothetical protein; 62.0 2.3E+02 0.0051 30.6 16.2 157 480-663 40-216 (238)
442 cd06294 PBP1_ycjW_transcriptio 61.6 1.8E+02 0.0039 29.1 14.4 116 224-365 141-267 (270)
443 TIGR02955 TMAO_TorT TMAO reduc 61.6 2.1E+02 0.0046 29.9 17.0 64 225-300 19-87 (295)
444 PRK14024 phosphoribosyl isomer 61.5 36 0.00079 35.7 8.4 164 479-678 64-238 (241)
445 cd08604 GDPD_SHV3_repeat_2 Gly 61.5 17 0.00037 39.4 6.2 37 619-655 241-292 (300)
446 cd07950 Gallate_Doxase_N The N 61.3 65 0.0014 34.9 10.4 178 220-419 33-234 (277)
447 cd08583 PI-PLCc_GDPD_SF_unchar 61.1 10 0.00022 39.1 4.2 91 542-655 142-233 (237)
448 TIGR02417 fruct_sucro_rep D-fr 61.0 45 0.00097 35.1 9.0 80 209-300 60-146 (327)
449 cd08570 GDPD_YPL206cp_fungi Gl 60.9 10 0.00022 39.0 4.2 36 619-654 195-231 (234)
450 cd00423 Pterin_binding Pterin 60.9 97 0.0021 32.9 11.5 93 638-743 27-119 (258)
451 cd01541 PBP1_AraR Ligand-bindi 60.8 34 0.00075 34.7 7.9 71 222-300 16-89 (273)
452 PRK06843 inosine 5-monophospha 60.8 56 0.0012 37.5 10.2 65 638-721 155-219 (404)
453 COG0859 RfaF ADP-heptose:LPS h 60.8 31 0.00067 37.7 8.0 149 570-729 65-244 (334)
454 PRK09054 phosphogluconate dehy 60.7 20 0.00044 42.9 6.9 304 183-611 43-386 (603)
455 PRK04169 geranylgeranylglycery 60.6 20 0.00043 38.1 6.2 136 566-732 86-221 (232)
456 COG2200 Rtn c-di-GMP phosphodi 60.6 19 0.0004 38.1 6.1 92 561-652 121-231 (256)
457 COG0269 SgbH 3-hexulose-6-phos 60.6 1.1E+02 0.0023 32.7 11.4 98 618-730 96-198 (217)
458 COG0214 SNZ1 Pyridoxine biosyn 60.5 21 0.00046 38.5 6.3 212 482-745 11-262 (296)
459 cd06311 PBP1_ABC_sugar_binding 60.3 2E+02 0.0043 29.2 16.9 78 212-300 2-91 (274)
460 PRK13585 1-(5-phosphoribosyl)- 60.3 1.2E+02 0.0026 31.2 11.9 175 469-680 55-240 (241)
461 cd03174 DRE_TIM_metallolyase D 60.1 80 0.0017 32.6 10.5 144 573-728 19-170 (265)
462 PRK10415 tRNA-dihydrouridine s 59.8 64 0.0014 35.5 10.2 136 505-658 82-227 (321)
463 cd06295 PBP1_CelR Ligand bindi 59.8 36 0.00078 34.6 7.8 67 222-300 27-93 (275)
464 cd02072 Glm_B12_BD B12 binding 59.8 32 0.00069 33.5 7.0 72 503-590 40-112 (128)
465 cd06320 PBP1_allose_binding Pe 59.7 22 0.00048 36.1 6.3 65 224-300 18-88 (275)
466 cd02922 FCB2_FMN Flavocytochro 59.6 18 0.00038 40.4 5.9 119 480-612 203-335 (344)
467 cd00951 KDGDH 5-dehydro-4-deox 59.6 23 0.0005 38.0 6.7 74 474-563 51-129 (289)
468 cd02930 DCR_FMN 2,4-dienoyl-Co 59.6 61 0.0013 35.9 10.1 79 636-722 221-304 (353)
469 COG3867 Arabinogalactan endo-1 59.3 16 0.00035 40.5 5.4 77 634-712 155-235 (403)
470 TIGR01362 KDO8P_synth 3-deoxy- 59.1 84 0.0018 34.2 10.5 91 560-655 3-99 (258)
471 cd08556 GDPD Glycerophosphodie 59.0 13 0.00027 36.0 4.2 37 618-654 150-187 (189)
472 PF02571 CbiJ: Precorrin-6x re 59.0 22 0.00048 37.9 6.3 50 242-299 48-98 (249)
473 cd07947 DRE_TIM_Re_CS Clostrid 59.0 86 0.0019 34.0 10.9 114 571-704 19-141 (279)
474 PRK07178 pyruvate carboxylase 58.9 2.3E+02 0.0049 32.8 14.8 154 505-687 17-188 (472)
475 cd04737 LOX_like_FMN L-Lactate 58.9 21 0.00046 40.0 6.4 92 480-591 211-303 (351)
476 PRK12999 pyruvate carboxylase; 58.9 2.2E+02 0.0048 37.0 15.9 153 506-687 21-193 (1146)
477 PRK07896 nicotinate-nucleotide 58.9 52 0.0011 36.2 9.2 143 552-725 127-275 (289)
478 PRK02506 dihydroorotate dehydr 58.8 60 0.0013 35.5 9.8 173 332-525 98-275 (310)
479 TIGR02690 resist_ArsH arsenica 58.8 29 0.00063 36.5 7.0 111 3-135 25-151 (219)
480 PRK09389 (R)-citramalate synth 58.7 1E+02 0.0023 36.0 12.1 136 575-729 26-168 (488)
481 TIGR03471 HpnJ hopanoid biosyn 58.7 37 0.00079 38.9 8.4 128 572-714 226-361 (472)
482 PRK08462 biotin carboxylase; V 58.5 16 0.00034 41.2 5.4 93 617-725 16-108 (445)
483 PRK05437 isopentenyl pyrophosp 58.4 1.4E+02 0.0031 33.4 12.7 150 492-654 120-289 (352)
484 cd08573 GDPD_GDE1 Glycerophosp 58.3 11 0.00023 39.9 3.8 34 619-653 219-254 (258)
485 cd08563 GDPD_TtGDE_like Glycer 58.1 12 0.00027 38.2 4.2 36 619-654 191-227 (230)
486 PRK15452 putative protease; Pr 57.9 51 0.0011 38.1 9.4 156 494-700 4-168 (443)
487 TIGR02134 transald_staph trans 57.9 88 0.0019 33.5 10.4 100 618-731 102-207 (236)
488 PF02679 ComA: (2R)-phospho-3- 57.9 15 0.00032 39.4 4.8 83 559-656 67-168 (244)
489 cd00408 DHDPS-like Dihydrodipi 57.8 27 0.00057 36.9 6.7 74 474-563 48-127 (281)
490 cd07938 DRE_TIM_HMGL 3-hydroxy 57.8 54 0.0012 35.3 9.0 144 574-730 21-175 (274)
491 PLN02424 ketopantoate hydroxym 57.7 74 0.0016 35.8 10.2 115 617-737 23-148 (332)
492 cd07364 PCA_45_Dioxygenase_B S 57.7 1.8E+02 0.004 31.6 13.0 166 220-393 33-217 (277)
493 COG1794 RacX Aspartate racemas 57.7 54 0.0012 35.1 8.7 128 505-666 67-204 (230)
494 cd06271 PBP1_AglR_RafR_like Li 57.5 42 0.0009 33.6 7.7 68 221-300 19-88 (268)
495 PRK12376 putative translaldola 57.4 57 0.0012 34.8 9.0 99 618-730 102-206 (236)
496 PRK09140 2-dehydro-3-deoxy-6-p 57.3 1.1E+02 0.0025 31.6 11.0 112 571-723 20-132 (206)
497 PRK08227 autoinducer 2 aldolas 57.2 99 0.0021 33.6 10.8 127 553-712 68-212 (264)
498 cd08612 GDPD_GDE4 Glycerophosp 57.1 13 0.00027 40.2 4.2 37 619-655 252-289 (300)
499 PRK05198 2-dehydro-3-deoxyphos 57.1 96 0.0021 33.9 10.6 90 560-654 11-106 (264)
500 cd08575 GDPD_GDE4_like Glycero 57.0 13 0.00027 39.4 4.1 37 619-655 222-259 (264)
No 1
>PF06792 UPF0261: Uncharacterised protein family (UPF0261); InterPro: IPR008322 The proteins in this entry are functionally uncharacterised.
Probab=100.00 E-value=1.6e-154 Score=1247.01 Aligned_cols=402 Identities=48% Similarity=0.780 Sum_probs=384.3
Q ss_pred CCEEEEEEcCcccHHHHHHHHHHHHccccccCCCCCCCCcEEEEeccCCCCCCCCCCCccccChHHHHhhCCCCCCCCCC
Q 004491 5 IPRVFCIGTADTKLEELQFLSGSVRSNLATFSNNSSSKVDVVVVDVSVSGKETENVGDFKFVKRKAVLSCLPESNGKIPD 84 (749)
Q Consensus 5 ~~tV~lIGT~DTK~~E~~ylr~~I~~~~~~~~~~~~~G~~v~~iDvg~~~~~~~~~~D~~~Is~~~Va~~~~~~~~~~~~ 84 (749)
||+|+||||||||++|+.|||++|++ .|++|++||||+.+.++ ..+| ||+++|+++++.+. +.
T Consensus 1 M~tI~iigT~DTK~~E~~yl~~~i~~----------~G~~v~~iDvg~~~~~~-~~~d---i~~~eVa~~~g~~~---~~ 63 (403)
T PF06792_consen 1 MKTIAIIGTLDTKGEELLYLRDQIEA----------QGVEVLLIDVGTLGEPS-FPPD---ISREEVARAAGDSI---EA 63 (403)
T ss_pred CCEEEEEEccCCCHHHHHHHHHHHHH----------CCCcEEEEEcCCCCCCC-CCCC---cCHHHHHHhcCCCh---HH
Confidence 79999999999999999999999999 69999999999998665 4478 99999999987652 23
Q ss_pred c-ccCcHHHHHHHHHHHHHHHHHHhHhcCcccEEEEecCcchhHHHHHHhhhCCCCCCeeEEecccCCCCCCCcccCCce
Q 004491 85 E-LDDDRGKAISFMSKALENFLQIAIEDQVLAGVIGLGGSGGTSLISSAFKSLPIGLPKVIVSTVASGQTEPYIGTSDLI 163 (749)
Q Consensus 85 ~-~~~dRg~Ai~~M~~~~~~~l~~l~~~g~i~GVIglGGs~GT~lat~aMr~LPiG~PKlmVSTmASGd~~pyVG~sDI~ 163 (749)
. ...||++||++|++|+++++++||++|+||||||+|||+||+|++++||+||+||||||||||||||++||||++||+
T Consensus 64 ~~~~~dRg~ai~~M~~ga~~~v~~l~~~g~i~Gvi~~GGs~GT~lat~aMr~LPiG~PKlmVST~ASGd~~~yvg~sDI~ 143 (403)
T PF06792_consen 64 VRSSGDRGEAIEAMARGAARFVSDLYDEGKIDGVIGIGGSGGTALATAAMRALPIGFPKLMVSTMASGDTSPYVGESDIT 143 (403)
T ss_pred hhccCCHHHHHHHHHHHHHHHHHHHHhcCCccEEEEecCCccHHHHHHHHHhCCCCCCeEEEEccCCCCcccccCcCCEE
Confidence 3 346999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeecccccccCcHHHHHHHHHHHHHHhccccchhhhccccCCCCCCcEEEEeccCCchHHHHHHHHHHHhcCccEEEEec
Q 004491 164 LIPSVVDVCGINSVSRVVFANAGAAFAGMVVGRLERLRDFGASKEKCTVGITMFGVTTPCVNAVKERLEKEGYETMVFHA 243 (749)
Q Consensus 164 mm~SVvDIaGLN~Isr~VL~NAA~AiaGMv~~~~~~~~~~~~~~~kp~IgiTMFGvTTp~V~~~r~~Le~~GyEvlVFHA 243 (749)
||||||||+|||+|||+||+|||+||+||++.+... ....+||+|||||||||||||+++|++||++||||+||||
T Consensus 144 mm~SVvDiaGlN~isr~vL~NAA~Ai~GM~~~~~~~----~~~~~kp~I~iTmfGvTTp~V~~~~~~Le~~G~Ev~VFHA 219 (403)
T PF06792_consen 144 MMYSVVDIAGLNSISRRVLSNAAGAIAGMAKAYESP----NQQEDKPLIGITMFGVTTPCVDAIRERLEEEGYEVLVFHA 219 (403)
T ss_pred EeeeccccccCCHHHHHHHHHHHHHHHHHhcccccc----cccCCCcEEEEECCCCcHHHHHHHHHHHHhcCCeEEEEcC
Confidence 999999999999999999999999999999866432 2337899999999999999999999999999999999999
Q ss_pred CCCchHHHHHHHHcCCceEEEeCchhhhhhhhhCCccCCCCchhhhhhhcCCCeEEecCccccccCCCCCCCCccccCCc
Q 004491 244 TGVGGRAMEALVKEGFIQGVLDITTTEVADYVVGGVMACDSSRFDATIEKKIPLVLSVGALDMVNFGAKDTIPSKFQRRK 323 (749)
Q Consensus 244 TG~GGrAME~Li~eG~~~gVlDlTttElaD~l~GGv~saGp~RL~AA~~~GIPqVVspGalDmVnFG~~dtvPe~f~~R~ 323 (749)
||+||||||+||++|+||||||||||||||||+||+++|||+||+||+|+||||||||||||||||||+||||++|++|+
T Consensus 220 tG~GG~aME~Li~~G~~~~VlDlTttEl~d~l~GGv~sagp~Rl~AA~~~GIP~Vvs~GalDmVnFg~~~tvPe~~~~R~ 299 (403)
T PF06792_consen 220 TGTGGRAMERLIREGQFDGVLDLTTTELADELFGGVLSAGPDRLEAAARAGIPQVVSPGALDMVNFGPPDTVPEKFKGRK 299 (403)
T ss_pred CCCchHHHHHHHHcCCcEEEEECcHHHHHHHHhCCCCCCCchHHHHHHHcCCCEEEecCccceeccCCcccCCHhhcCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeecCcceEEecCHHHHHHHHHHHHHHHccCCCCeEEEeeCCCCcccCCCCCCCCChhhhHHHHHHHHHhcccCCCceE
Q 004491 324 IHVHNQQVSLMRTTVDENKKFAAFIANKLNQSSSKIRLCLPQNGISALDAPGKPFYDPEATGTLISELRTLIQTNEDRQV 403 (749)
Q Consensus 324 ~~~HNp~vTlmRTt~eE~~~ig~~iA~kLn~a~gpv~vllP~~G~S~lD~~G~pf~DPeAd~al~~~L~~~l~~~~~~~v 403 (749)
+|+|||+|||||||+|||+++|+|||+|||+++|||+||||+||||++|+||+||||||||++||++||++|++ ..++|
T Consensus 300 ~~~HNp~vTlmRtt~eE~~~~g~~ia~kLn~~~gpv~v~lP~~G~S~~d~~G~~f~Dpead~al~~~l~~~l~~-~~i~v 378 (403)
T PF06792_consen 300 LYEHNPQVTLMRTTPEENRQLGEFIAEKLNRAKGPVRVLLPLGGVSALDRPGGPFYDPEADEALFDALRENLDG-SGIEV 378 (403)
T ss_pred ceecCCceeEeeCCHHHHHHHHHHHHHHHhcCCCCEEEEECCCCCcccCCCCCcCcChhHHHHHHHHHHHhCCC-CCcEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999997 35789
Q ss_pred EecCCCCCCHHHHHHHHHHHHHHHh
Q 004491 404 KVYPHNINDSEFADALVDSFLEISG 428 (749)
Q Consensus 404 ~~~d~hINDp~FA~a~a~~l~~l~~ 428 (749)
+++|+|||||+||++++++|+++|+
T Consensus 379 ~~~~~hIND~~FA~~~~~~l~~~~~ 403 (403)
T PF06792_consen 379 IEVDAHINDPEFADAAAEALLELME 403 (403)
T ss_pred EECCCCCCCHHHHHHHHHHHHHHhC
Confidence 9999999999999999999999984
No 2
>PRK02399 hypothetical protein; Provisional
Probab=100.00 E-value=4.9e-153 Score=1233.72 Aligned_cols=403 Identities=46% Similarity=0.748 Sum_probs=382.5
Q ss_pred CCEEEEEEcCcccHHHHHHHHHHHHccccccCCCCCCCCcEEEEeccCCCCCCCCCCCccccChHHHHhhCCCCCCCCCC
Q 004491 5 IPRVFCIGTADTKLEELQFLSGSVRSNLATFSNNSSSKVDVVVVDVSVSGKETENVGDFKFVKRKAVLSCLPESNGKIPD 84 (749)
Q Consensus 5 ~~tV~lIGT~DTK~~E~~ylr~~I~~~~~~~~~~~~~G~~v~~iDvg~~~~~~~~~~D~~~Is~~~Va~~~~~~~~~~~~ 84 (749)
|++|+||||||||++|+.|||++|++ .|++|++||||+.+.|. +.+| ||+++|+++++.+.. ..
T Consensus 3 ~~~I~iigT~DTK~~E~~yl~~~i~~----------~g~~v~~iDv~~~~~p~-~~~d---is~~~Va~~~g~~~~--~~ 66 (406)
T PRK02399 3 MKRIYIAGTLDTKGEELAYVKDLIEA----------AGLEVVTVDVSGLGEPP-FEPD---ISAEEVAEAAGDGIE--AV 66 (406)
T ss_pred CCEEEEEeccCCcHHHHHHHHHHHHH----------CCCceEEEecCCCCCCC-CCCC---CCHHHHHHHcCCCHH--Hh
Confidence 68999999999999999999999998 69999999999987554 4578 999999999876521 22
Q ss_pred cccCcHHHHHHHHHHHHHHHHHHhHhcCcccEEEEecCcchhHHHHHHhhhCCCCCCeeEEecccCCCCCCCcccCCcee
Q 004491 85 ELDDDRGKAISFMSKALENFLQIAIEDQVLAGVIGLGGSGGTSLISSAFKSLPIGLPKVIVSTVASGQTEPYIGTSDLIL 164 (749)
Q Consensus 85 ~~~~dRg~Ai~~M~~~~~~~l~~l~~~g~i~GVIglGGs~GT~lat~aMr~LPiG~PKlmVSTmASGd~~pyVG~sDI~m 164 (749)
....||++||++|++|+++++++||++|+||||||+|||+||+|++++||+||+||||||||||||||++||||++||+|
T Consensus 67 ~~~~dRg~ai~~M~~ga~~~v~~L~~~g~i~gviglGGs~GT~lat~aMr~LPiG~PKlmVSTmAsg~~~~yvg~sDI~m 146 (406)
T PRK02399 67 FCGGDRGSAMAAMAEGAAAFVRELYERGDVAGVIGLGGSGGTALATPAMRALPIGVPKLMVSTMASGDVSPYVGASDIAM 146 (406)
T ss_pred hcCccHHHHHHHHHHHHHHHHHHHHhcCCccEEEEecCcchHHHHHHHHHhCCCCCCeEEEEccccCCCcCccccCCEEE
Confidence 33469999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eecccccccCcHHHHHHHHHHHHHHhccccchhhhccccCCCCCCcEEEEeccCCchHHHHHHHHHHHhcCccEEEEecC
Q 004491 165 IPSVVDVCGINSVSRVVFANAGAAFAGMVVGRLERLRDFGASKEKCTVGITMFGVTTPCVNAVKERLEKEGYETMVFHAT 244 (749)
Q Consensus 165 m~SVvDIaGLN~Isr~VL~NAA~AiaGMv~~~~~~~~~~~~~~~kp~IgiTMFGvTTp~V~~~r~~Le~~GyEvlVFHAT 244 (749)
|||||||+|||+|||+||+|||+|++||++.... ....+||+||+||||||||||+++|++||++||||+|||||
T Consensus 147 m~SV~DiaGlN~isr~vl~NAA~aiaGm~~~~~~-----~~~~~kp~Ig~TmfGvTtp~v~~~~~~Le~~GyEvlVFHAT 221 (406)
T PRK02399 147 MYSVTDIAGLNRISRQVLSNAAGAIAGMVKFEQP-----APSDDKPLIGLTMFGVTTPCVQAAREELEARGYEVLVFHAT 221 (406)
T ss_pred eccccccccchHHHHHHHHHHHHHHHHHhhcccc-----CCCCCCceEEEecCCCcHHHHHHHHHHHHhCCCeEEEEcCC
Confidence 9999999999999999999999999999974321 13468999999999999999999999999999999999999
Q ss_pred CCchHHHHHHHHcCCceEEEeCchhhhhhhhhCCccCCCCchhhhhhhcCCCeEEecCccccccCCCCCCCCccccCCce
Q 004491 245 GVGGRAMEALVKEGFIQGVLDITTTEVADYVVGGVMACDSSRFDATIEKKIPLVLSVGALDMVNFGAKDTIPSKFQRRKI 324 (749)
Q Consensus 245 G~GGrAME~Li~eG~~~gVlDlTttElaD~l~GGv~saGp~RL~AA~~~GIPqVVspGalDmVnFG~~dtvPe~f~~R~~ 324 (749)
|+||||||+||++|+|+||||||||||||||+||+++|||+||+||+|+|||||||||||||||||++||||++|++|++
T Consensus 222 G~GGraME~Li~~G~~~gVlDlTttEv~d~l~GGv~sagp~Rl~Aa~~~gIP~Vvs~GalDmVnFg~~~tvPe~f~~R~~ 301 (406)
T PRK02399 222 GTGGRAMEKLIDSGLIAGVLDLTTTEVCDELFGGVLAAGPDRLEAAARTGIPQVVSPGALDMVNFGAPDTVPEKFRGRLL 301 (406)
T ss_pred CCchHHHHHHHHcCCceEEEEcchHHHHHHHhCcCccCCccHHHHHHHcCCCEEecCCceeeeecCCcccccHhhcCCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeecCcceEEecCHHHHHHHHHHHHHHHccCCCCeEEEeeCCCCcccCCCCCCCCChhhhHHHHHHHHHhcccCCCceEE
Q 004491 325 HVHNQQVSLMRTTVDENKKFAAFIANKLNQSSSKIRLCLPQNGISALDAPGKPFYDPEATGTLISELRTLIQTNEDRQVK 404 (749)
Q Consensus 325 ~~HNp~vTlmRTt~eE~~~ig~~iA~kLn~a~gpv~vllP~~G~S~lD~~G~pf~DPeAd~al~~~L~~~l~~~~~~~v~ 404 (749)
|+|||+|||||||+|||+++|+|||+|||+++|||+|+||+||||++|+||+||||||||++||++|+++|++ .++|+
T Consensus 302 ~~HNp~vTlmRTt~eE~~~~g~~ia~kLn~a~gpv~vllP~~G~S~~D~~G~~f~Dpead~alf~~l~~~l~~--~~~v~ 379 (406)
T PRK02399 302 YKHNPQVTLMRTTPEENRQIGRWIAEKLNRAKGPVAFLIPLGGVSALDRPGQPFHDPEADAAFFDALEETVTE--TRRLI 379 (406)
T ss_pred eecCCcceeeecCHHHHHHHHHHHHHHHhcCCCCeEEEEeCCCCccccCCCCCccChhHHHHHHHHHHHhCCC--CceEE
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999953 47899
Q ss_pred ecCCCCCCHHHHHHHHHHHHHHHhcc
Q 004491 405 VYPHNINDSEFADALVDSFLEISGKN 430 (749)
Q Consensus 405 ~~d~hINDp~FA~a~a~~l~~l~~~~ 430 (749)
++|+|||||+||+++++.|++++++.
T Consensus 380 ~~~~hIND~~FA~a~~~~l~~~~~~~ 405 (406)
T PRK02399 380 EVPAHINDPEFAEAAVEAFEELMARG 405 (406)
T ss_pred ECCCCCCCHHHHHHHHHHHHHHHhcc
Confidence 99999999999999999999999864
No 3
>COG5441 Uncharacterized conserved protein [Function unknown]
Probab=100.00 E-value=1.7e-137 Score=1065.17 Aligned_cols=398 Identities=48% Similarity=0.782 Sum_probs=380.3
Q ss_pred CCEEEEEEcCcccHHHHHHHHHHHHccccccCCCCCCCCcEEEEeccCCCCCCCCCCCccccChHHHHhhCCCCCCCCCC
Q 004491 5 IPRVFCIGTADTKLEELQFLSGSVRSNLATFSNNSSSKVDVVVVDVSVSGKETENVGDFKFVKRKAVLSCLPESNGKIPD 84 (749)
Q Consensus 5 ~~tV~lIGT~DTK~~E~~ylr~~I~~~~~~~~~~~~~G~~v~~iDvg~~~~~~~~~~D~~~Is~~~Va~~~~~~~~~~~~ 84 (749)
||+|+++||+|||++||.||+++|++ .|..+++||||+.+.+++ .+| ||.++|+.+++++.+ .
T Consensus 2 ~krIyVvgT~DTKg~EL~ylad~I~~----------aG~~~v~vDvs~~~~~~~-~~d---is~~~VA~~hp~~~q---A 64 (401)
T COG5441 2 MKRIYVVGTADTKGEELAYLADLIEA----------AGGSPVLVDVSTLRNPTS-EVD---ISAEDVAGAHPGGRQ---A 64 (401)
T ss_pred CceEEEEecCCCcchhHHHHHHHHHH----------cCCCeEEEEeeccCCCCC-Ccc---cCHHHHhhhCCCcce---e
Confidence 68999999999999999999999999 699999999999866654 489 999999999998743 4
Q ss_pred ccc-CcHHHHHHHHHHHHHHHHHHhHhcCcccEEEEecCcchhHHHHHHhhhCCCCCCeeEEecccCCCCCCCcccCCce
Q 004491 85 ELD-DDRGKAISFMSKALENFLQIAIEDQVLAGVIGLGGSGGTSLISSAFKSLPIGLPKVIVSTVASGQTEPYIGTSDLI 163 (749)
Q Consensus 85 ~~~-~dRg~Ai~~M~~~~~~~l~~l~~~g~i~GVIglGGs~GT~lat~aMr~LPiG~PKlmVSTmASGd~~pyVG~sDI~ 163 (749)
.+. +||++||.+|+.++.+++... ++++|+||+|||+||+|++++||.||+|+||+||||+||||+.||||.+||+
T Consensus 65 v~~~~Drg~AiaaMa~A~~r~l~sR---~dV~gmig~GGsgGT~lit~~m~~LPlgvPK~mVST~Asgdv~pyv~~sDi~ 141 (401)
T COG5441 65 VLDGNDRGSAIAAMAEAFVRFLSSR---GDVAGMIGMGGSGGTALITPAMRRLPLGVPKVMVSTLASGDVAPYVGVSDII 141 (401)
T ss_pred EeccCchhHHHHHHHHHHHHHhhcc---cchhheeecCCCcchHhhhhHHHhcCcCCcceeeeeeeccCcCCCCChhHee
Confidence 444 599999999999999998766 9999999999999999999999999999999999999999999999999999
Q ss_pred eeecccccccCcHHHHHHHHHHHHHHhccccchhhhccccCCCCCCcEEEEeccCCchHHHHHHHHHHHhcCccEEEEec
Q 004491 164 LIPSVVDVCGINSVSRVVFANAGAAFAGMVVGRLERLRDFGASKEKCTVGITMFGVTTPCVNAVKERLEKEGYETMVFHA 243 (749)
Q Consensus 164 mm~SVvDIaGLN~Isr~VL~NAA~AiaGMv~~~~~~~~~~~~~~~kp~IgiTMFGvTTp~V~~~r~~Le~~GyEvlVFHA 243 (749)
|||||.|++|||+|||.||+|||+||+||++-.. .++.+||.||+||||||||||++++++||+. |+|+||||
T Consensus 142 Mm~svtd~aGLNrisR~VLsnAa~aiag~a~~~~------~~sa~kPaiGlTmfGvttpCv~av~~~L~~~-yDclvFHA 214 (401)
T COG5441 142 MMYSVTDMAGLNRISRVVLSNAAHAIAGMAKRPA------EPSAEKPAIGLTMFGVTTPCVQAVKPELEAR-YDCLVFHA 214 (401)
T ss_pred eeeeccccccccHHHHHHHHHHHHHHHHHHhccC------CCCCCCCcceeeecccccHHHHHHHHHHhcc-ccEEEEEe
Confidence 9999999999999999999999999999998432 2345699999999999999999999999987 99999999
Q ss_pred CCCchHHHHHHHHcCCceEEEeCchhhhhhhhhCCccCCCCchhhhhhhcCCCeEEecCccccccCCCCCCCCccccCCc
Q 004491 244 TGVGGRAMEALVKEGFIQGVLDITTTEVADYVVGGVMACDSSRFDATIEKKIPLVLSVGALDMVNFGAKDTIPSKFQRRK 323 (749)
Q Consensus 244 TG~GGrAME~Li~eG~~~gVlDlTttElaD~l~GGv~saGp~RL~AA~~~GIPqVVspGalDmVnFG~~dtvPe~f~~R~ 323 (749)
||+||||||+|.++|.+.||||+||||+||+++|||+.|+||||+|++|.|||||.|||||||||||+|+||||+|++|.
T Consensus 215 TGtGGra~EklAdsgll~gv~D~tttEVcd~l~ggVl~~~pdRf~a~art~lPyvgs~GAlDMVnf~a~~tVPeqyr~R~ 294 (401)
T COG5441 215 TGTGGRAMEKLADSGLLVGVLDITTTEVCDLLFGGVLPCTPDRFGAIARTGLPYVGSCGALDMVNFGAPETVPEQYRDRL 294 (401)
T ss_pred cCCccHHHHHHHhcCCeEEEEEeehHhhhHHHhCCeecCChhhhhhhhhcCCCccccccceeeecCCCcccChHHhcCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeecCcceEEecCHHHHHHHHHHHHHHHccCCCCeEEEeeCCCCcccCCCCCCCCChhhhHHHHHHHHHhcccCCCceE
Q 004491 324 IHVHNQQVSLMRTTVDENKKFAAFIANKLNQSSSKIRLCLPQNGISALDAPGKPFYDPEATGTLISELRTLIQTNEDRQV 403 (749)
Q Consensus 324 ~~~HNp~vTlmRTt~eE~~~ig~~iA~kLn~a~gpv~vllP~~G~S~lD~~G~pf~DPeAd~al~~~L~~~l~~~~~~~v 403 (749)
||.|||||||||||||||+++||||++|||.|.|||+|+||++|||+||+|||||||||||.+||++|++.+.+++++++
T Consensus 295 ~~~HN~~vtlmrtspee~~ai~rwig~kLn~c~gpvrFliPe~GvsalD~~G~pf~dpeA~aa~~~ale~tv~~td~rr~ 374 (401)
T COG5441 295 FYAHNPQVTLMRTSPEECRAIGRWIGAKLNLCAGPVRFLIPEGGVSALDAPGQPFHDPEADAALFEALERTVSGTDKRRV 374 (401)
T ss_pred hhhcCCceeEEeCCHHHHHHHHHHHHHHHhhccCceEEEecCCCcccccCCCCcCCChHHHHHHHHHHHHhhcccccceE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EecCCCCCCHHHHHHHHHHHHHHHhc
Q 004491 404 KVYPHNINDSEFADALVDSFLEISGK 429 (749)
Q Consensus 404 ~~~d~hINDp~FA~a~a~~l~~l~~~ 429 (749)
.++|.|||||+||++++..|.++..+
T Consensus 375 ~~~p~hINdPeFA~~ava~f~~~~~~ 400 (401)
T COG5441 375 ERVPLHINDPEFASAAVANFKEIVNE 400 (401)
T ss_pred EecccccCCHHHHHHHHHHHHHHhcC
Confidence 99999999999999999999998753
No 4
>PF09370 TIM-br_sig_trns: TIM-barrel signal transduction protein; InterPro: IPR009215 Members of this family are predicted to have a TIM barrel fold, based on PSI-BLAST analysis (iteration 4) and on SCOP prediction (using SMART). Interestingly, this novel domain also exists as an N-terminal domain of sigma54-dependent transcriptional activators (enhancer-binding proteins). Because sigma54 dependent activators typically have a three-domain structure: the variable N-terminal regulatory (activation) domain involved in signal recognition/receiving, the central AAA-type ATPase domain, and the DNA-binding domain (see PIRSF003187 from PIRSF, PIRSF005263 from PIRSF, PIRSF003184 from PIRSF, PIRSF005263 from PIRSF, IPR014443 from INTERPRO for details), the proteins of the current entry may be predicted to play a role in signal recognition/receiving and signal transduction.; PDB: 2P10_C.
Probab=100.00 E-value=6.1e-119 Score=923.61 Aligned_cols=268 Identities=70% Similarity=1.141 Sum_probs=224.4
Q ss_pred HHHHHHHHHHhhcCCCeEEeccccchhhhhhhhcCCcEEEEeccccccccCCccccccccccCchHHHHHhhhhhcCCCC
Q 004491 479 QAILSKLKYQIDKGLPIIGAGAGTGISAKFEEAGGVDLIVLYNSGRFRMAGRGSLAGLLPFADANAVVLEMANEVLPVVK 558 (749)
Q Consensus 479 ~~il~~L~~~i~~~~piig~gaGtGlsAk~ae~gGaDli~~ynsGrfR~~G~~SlagllpygdaN~iv~e~~~eilp~v~ 558 (749)
||||++||+||++|+||||+|||||||||++|+||||||++||||||||+||+|++|||||+|||++|+||++||||+|+
T Consensus 1 ~eil~~l~~~i~~~~pIig~gaGtGlsAk~ae~gGaDlI~~ynsGrfR~~G~~SlagllpygnaN~iv~em~~eiLp~v~ 80 (268)
T PF09370_consen 1 KEILDRLRAQIKAGKPIIGAGAGTGLSAKCAEKGGADLILIYNSGRFRMAGRGSLAGLLPYGNANEIVMEMAREILPVVK 80 (268)
T ss_dssp -HHHHHHHHHHHTT--EEEEEESSHHHHHHHHHTT-SEEEE-HHHHHHHTT--GGGGGBTEEEHHHHHHHHHHHHGGG-S
T ss_pred ChHHHHHHHHHhCCCceEEEeeccchhhHHHHhcCCCEEEEecchhHhhCCCcchhhhhcccCHhHHHHHHHHhhhhhcc
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCceEEeeccCCCCCCHHHHHHHHHHcCccceecCCcccccchhhhhhhhhcCCchHHHHHHHHHHHHcCCcccccccCH
Q 004491 559 EVPVLAGVCGTDPFRRVDYFLKQLESIGFFGVQNFPTVGLFDGNFRQNLEETGMGYGLEVEMIDKAHKMGLLTTPYAFNE 638 (749)
Q Consensus 559 ~tPViaGv~atDP~~~~~~~l~~lk~~Gf~GV~NfPTvgliDG~fR~~LEe~G~gy~~EVemi~~A~~~gl~T~~yvf~~ 638 (749)
||||||||||||||++|++||++||++||+|||||||||||||+||++|||+||||++||||||+||++||||+|||||+
T Consensus 81 ~tPViaGv~atDP~~~~~~fl~~lk~~Gf~GV~NfPTvgliDG~fR~~LEe~Gmgy~~EVemi~~A~~~gl~T~~yvf~~ 160 (268)
T PF09370_consen 81 DTPVIAGVCATDPFRDMDRFLDELKELGFSGVQNFPTVGLIDGQFRQNLEETGMGYDREVEMIRKAHEKGLFTTAYVFNE 160 (268)
T ss_dssp SS-EEEEE-TT-TT--HHHHHHHHHHHT-SEEEE-S-GGG--HHHHHHHHHTT--HHHHHHHHHHHHHTT-EE--EE-SH
T ss_pred CCCEEEEecCcCCCCcHHHHHHHHHHhCCceEEECCcceeeccHHHHHHHhcCCCHHHHHHHHHHHHHCCCeeeeeecCH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhccCcEEEeccCCCcccccccccccCHHHHHHHHHHHHHHHHHhCCCeEEEEccCCCCCHHHHHHHHhhCCCc
Q 004491 639 GEAVKMAKAGADIIVAHMGLTTSGSIGAKTALSLDESVDRVQAIADAAHRINPDAIVLCHGGPISSPSEAEFILKRTKGV 718 (749)
Q Consensus 639 eqa~~Ma~AGaDiiv~h~GlT~gG~~Ga~~~~sl~~~~~~~~~i~~aa~~~~pdii~l~hGGPi~~p~d~~~~l~~~~~~ 718 (749)
|||++|++|||||||+|||||+||++|+++++||++|++++|+|+++|+++|||+|||||||||++|+|+||+|++|+++
T Consensus 161 e~A~~M~~AGaDiiv~H~GlT~gG~~Ga~~~~sl~~a~~~~~~i~~aa~~v~~dii~l~hGGPI~~p~D~~~~l~~t~~~ 240 (268)
T PF09370_consen 161 EQARAMAEAGADIIVAHMGLTTGGSIGAKTALSLEEAAERIQEIFDAARAVNPDIIVLCHGGPIATPEDAQYVLRNTKGI 240 (268)
T ss_dssp HHHHHHHHHT-SEEEEE-SS----------S--HHHHHHHHHHHHHHHHCC-TT-EEEEECTTB-SHHHHHHHHHH-TTE
T ss_pred HHHHHHHHcCCCEEEecCCccCCCCcCccccCCHHHHHHHHHHHHHHHHHhCCCeEEEEeCCCCCCHHHHHHHHhcCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cEEecCcccccchHHHHHHHHHHhhccc
Q 004491 719 HGFYGASSMERLPVEQAITSTMRQYKSI 746 (749)
Q Consensus 719 ~Gf~g~Ss~ERlP~E~ai~~~~~~FK~~ 746 (749)
|||||+|||||||+|+||++++++||+|
T Consensus 241 ~Gf~G~Ss~ERlP~E~ai~~~~~~FK~l 268 (268)
T PF09370_consen 241 HGFIGASSMERLPVERAITETVRAFKSL 268 (268)
T ss_dssp EEEEESTTTTHHHHHHHHHHHHHHHHT-
T ss_pred CEEecccchhhccHHHHHHHHHHHhhcC
Confidence 9999999999999999999999999986
No 5
>COG5564 Predicted TIM-barrel enzyme, possibly a dioxygenase [General function prediction only]
Probab=100.00 E-value=1e-102 Score=779.82 Aligned_cols=273 Identities=62% Similarity=1.003 Sum_probs=271.0
Q ss_pred cccHHHHHHHHHHHhhcCCCeEEeccccchhhhhhhhcCCcEEEEeccccccccCCccccccccccCchHHHHHhhhhhc
Q 004491 475 LQRTQAILSKLKYQIDKGLPIIGAGAGTGISAKFEEAGGVDLIVLYNSGRFRMAGRGSLAGLLPFADANAVVLEMANEVL 554 (749)
Q Consensus 475 ~~~r~~il~~L~~~i~~~~piig~gaGtGlsAk~ae~gGaDli~~ynsGrfR~~G~~SlagllpygdaN~iv~e~~~eil 554 (749)
.|.|.||+.++|..|.+++||+|+++||||+||++|+||+|||++||||||||+||+|++|||||+|+|++|+||++|+|
T Consensus 3 ~~~~~ei~~~~r~ti~~~s~iig~~~gTglsAkaeeagg~d~i~~~nsgr~r~ag~~Sl~gLLa~~naN~~vld~a~e~l 82 (276)
T COG5564 3 AMFRVEIVASFRYTIHKGSPIIGGGAGTGLSAKAEEAGGIDLIYIYNSGRYRMAGRGSLAGLLAYGNANDIVLDMAREVL 82 (276)
T ss_pred cchHHHHHHHHHHhhcCCCcccccccccchhhhhhhcCCceEEEEecCccccccccchhhhhhhccCccHHHHHHHHhhC
Confidence 57799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCceEEeeccCCCCCCHHHHHHHHHHcCccceecCCcccccchhhhhhhhhcCCchHHHHHHHHHHHHcCCccccc
Q 004491 555 PVVKEVPVLAGVCGTDPFRRVDYFLKQLESIGFFGVQNFPTVGLFDGNFRQNLEETGMGYGLEVEMIDKAHKMGLLTTPY 634 (749)
Q Consensus 555 p~v~~tPViaGv~atDP~~~~~~~l~~lk~~Gf~GV~NfPTvgliDG~fR~~LEe~G~gy~~EVemi~~A~~~gl~T~~y 634 (749)
|++++|||+||||++|||+.|+.||++||++||+||||||||++|||+||++|||+||||.+||||||+||++||+|+||
T Consensus 83 p~~r~tpv~aGv~~~DPf~~~~~~L~~L~~~gf~gV~NFPTv~~iDG~~R~~lEetGmG~~~Evemlr~A~~k~l~t~~y 162 (276)
T COG5564 83 PVVRQTPVLAGVNGTDPFCRMVDFLKELKTAGFSGVQNFPTVGLIDGRMRASLEETGMGYGLEVEMLREAHAKDLLTTPY 162 (276)
T ss_pred CccccCcceecccCCCcchhHHHHHHHHHhcCCcccccCCeeEEecchhhhhHHHhCcchHHHHHHHHHHHhccccccce
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCHHHHHHHHhccCcEEEeccCCCcccccccccccCHHHHHHHHHHHHHHHHHhCCCeEEEEccCCCCCHHHHHHHHhh
Q 004491 635 AFNEGEAVKMAKAGADIIVAHMGLTTSGSIGAKTALSLDESVDRVQAIADAAHRINPDAIVLCHGGPISSPSEAEFILKR 714 (749)
Q Consensus 635 vf~~eqa~~Ma~AGaDiiv~h~GlT~gG~~Ga~~~~sl~~~~~~~~~i~~aa~~~~pdii~l~hGGPi~~p~d~~~~l~~ 714 (749)
|||++||.+|++|||||||+|||||+||.||+..++|+++|++.++.++++++.+++|+|++||||||++|||++|++++
T Consensus 163 V~s~~eAqa~~~aGadiiv~hmg~ttgG~Igar~~~Sl~~~vel~~~~~~aar~v~kd~i~l~~GGPi~~p~da~yi~d~ 242 (276)
T COG5564 163 VFSFEEAQAMTKAGADIIVAHMGLTTGGLIGARSALSLADCVELIELAAEAARGVRKDVIPLCHGGPISMPEDARYILDR 242 (276)
T ss_pred ecCHHHHHHHHHcCcceeeecccccccceeccccccCHHHHHHHHHHHHHHHhhhhhceeeeccCCCcCCchhhHHHHhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCccEEecCcccccchHHHHHHHHHHhhcccc
Q 004491 715 TKGVHGFYGASSMERLPVEQAITSTMRQYKSIS 747 (749)
Q Consensus 715 ~~~~~Gf~g~Ss~ERlP~E~ai~~~~~~FK~~~ 747 (749)
+++||||||+|||||+|.|.||+++|.+||++.
T Consensus 243 c~~~~gfygassmerlp~e~ai~~~t~~fk~v~ 275 (276)
T COG5564 243 CPGCDGFYGASSMERLPAEAAIRRQTSAFKAVG 275 (276)
T ss_pred CCCCCcccccchhhccchHHHHHHHHHHHhhcc
Confidence 999999999999999999999999999999975
No 6
>cd04730 NPD_like 2-Nitropropane dioxygenase (NPD), one of the nitroalkane oxidizing enzyme families, catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDP is a member of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=98.51 E-value=3.7e-06 Score=85.27 Aligned_cols=164 Identities=20% Similarity=0.227 Sum_probs=114.9
Q ss_pred HHHHHhhhhhcCCCCCCceEEeeccCCCCCCHHHHHHHHHHcCccceecCCcccccchhhhhhhhhcCCchHHHHHHHHH
Q 004491 544 AVVLEMANEVLPVVKEVPVLAGVCGTDPFRRVDYFLKQLESIGFFGVQNFPTVGLFDGNFRQNLEETGMGYGLEVEMIDK 623 (749)
Q Consensus 544 ~iv~e~~~eilp~v~~tPViaGv~atDP~~~~~~~l~~lk~~Gf~GV~NfPTvgliDG~fR~~LEe~G~gy~~EVemi~~ 623 (749)
+.+.+..+++.+.. +.|+.+++...||......+++.+++.|+.||+= | ++ + ..++++.
T Consensus 39 ~~~~~~~~~i~~~~-~~~~~v~~i~~~~~~~~~~~~~~~~~~g~d~v~l-~-----~~------~--------~~~~~~~ 97 (236)
T cd04730 39 EALRAEIRKIRALT-DKPFGVNLLVPSSNPDFEALLEVALEEGVPVVSF-S-----FG------P--------PAEVVER 97 (236)
T ss_pred HHHHHHHHHHHHhc-CCCeEEeEecCCCCcCHHHHHHHHHhCCCCEEEE-c-----CC------C--------CHHHHHH
Confidence 44445555555543 4688889999887667899999999999999982 1 11 0 1356778
Q ss_pred HHHcCCcccccccCHHHHHHHHhccCcEEEeccCCCcccccccccccCHHHHHHHHHHHHHHHHHhCCCeEEEEccCCCC
Q 004491 624 AHKMGLLTTPYAFNEGEAVKMAKAGADIIVAHMGLTTSGSIGAKTALSLDESVDRVQAIADAAHRINPDAIVLCHGGPIS 703 (749)
Q Consensus 624 A~~~gl~T~~yvf~~eqa~~Ma~AGaDiiv~h~GlT~gG~~Ga~~~~sl~~~~~~~~~i~~aa~~~~pdii~l~hGGPi~ 703 (749)
+++.++..++.+.+.++++++.++|+|.|+.|-. .++|..+... .. ..+.++++.+.. ++-+++.|| |.
T Consensus 98 ~~~~~i~~i~~v~~~~~~~~~~~~gad~i~~~~~-~~~G~~~~~~-~~---~~~~i~~i~~~~-----~~Pvi~~GG-I~ 166 (236)
T cd04730 98 LKAAGIKVIPTVTSVEEARKAEAAGADALVAQGA-EAGGHRGTFD-IG---TFALVPEVRDAV-----DIPVIAAGG-IA 166 (236)
T ss_pred HHHcCCEEEEeCCCHHHHHHHHHcCCCEEEEeCc-CCCCCCCccc-cC---HHHHHHHHHHHh-----CCCEEEECC-CC
Confidence 8888999999999999999999999999999865 5555554432 12 133344443322 345666666 99
Q ss_pred CHHHHHHHHhhCCCccEEecCccc---ccchHHHHHHHHHH
Q 004491 704 SPSEAEFILKRTKGVHGFYGASSM---ERLPVEQAITSTMR 741 (749)
Q Consensus 704 ~p~d~~~~l~~~~~~~Gf~g~Ss~---ERlP~E~ai~~~~~ 741 (749)
+|+|+..+++ .+++|..-+|.+ +.-|.+..+++...
T Consensus 167 ~~~~v~~~l~--~GadgV~vgS~l~~~~e~~~~~~~~~~~~ 205 (236)
T cd04730 167 DGRGIAAALA--LGADGVQMGTRFLATEESGASPAYKQALL 205 (236)
T ss_pred CHHHHHHHHH--cCCcEEEEchhhhcCcccCCCHHHHHHHH
Confidence 9999999995 478999999876 33455555555443
No 7
>PRK00278 trpC indole-3-glycerol-phosphate synthase; Reviewed
Probab=98.21 E-value=4.7e-05 Score=80.20 Aligned_cols=186 Identities=23% Similarity=0.261 Sum_probs=124.5
Q ss_pred chhhhhhhhcCCcEEEEeccccccccCCccccccccccCchHHHHHhhhhhcCCCCCCceEEeeccCCCCCCHHHHHHHH
Q 004491 503 GISAKFEEAGGVDLIVLYNSGRFRMAGRGSLAGLLPFADANAVVLEMANEVLPVVKEVPVLAGVCGTDPFRRVDYFLKQL 582 (749)
Q Consensus 503 GlsAk~ae~gGaDli~~ynsGrfR~~G~~SlagllpygdaN~iv~e~~~eilp~v~~tPViaGv~atDP~~~~~~~l~~l 582 (749)
.-.|+..+.+|||-|-++-.-.| |+.+-+.+.+..+. | ++||+. -| |......+++.
T Consensus 73 ~~~A~~~~~~GA~aisvlte~~~-------------f~g~~~~l~~v~~~----v-~iPvl~----kd-fi~~~~qi~~a 129 (260)
T PRK00278 73 VEIAKAYEAGGAACLSVLTDERF-------------FQGSLEYLRAARAA----V-SLPVLR----KD-FIIDPYQIYEA 129 (260)
T ss_pred HHHHHHHHhCCCeEEEEeccccc-------------CCCCHHHHHHHHHh----c-CCCEEe----ee-ecCCHHHHHHH
Confidence 34688999999999966544444 33344444444332 2 589995 66 56666679999
Q ss_pred HHcCccceecCCcccccchhhhhhhhhcCCchHHHHHHHHHHHHcCCcccccccCHHHHHHHHhccCcEEEeccCCCccc
Q 004491 583 ESIGFFGVQNFPTVGLFDGNFRQNLEETGMGYGLEVEMIDKAHKMGLLTTPYAFNEGEAVKMAKAGADIIVAHMGLTTSG 662 (749)
Q Consensus 583 k~~Gf~GV~NfPTvgliDG~fR~~LEe~G~gy~~EVemi~~A~~~gl~T~~yvf~~eqa~~Ma~AGaDiiv~h~GlT~gG 662 (749)
++.|-.+|. +++.+.. .+.=-++++.|+++|+..+.=|.|.+|+++..++|+|+|++| +.+..
T Consensus 130 ~~~GAD~Vl-------Li~~~l~--------~~~l~~li~~a~~lGl~~lvevh~~~E~~~A~~~gadiIgin-~rdl~- 192 (260)
T PRK00278 130 RAAGADAIL-------LIVAALD--------DEQLKELLDYAHSLGLDVLVEVHDEEELERALKLGAPLIGIN-NRNLK- 192 (260)
T ss_pred HHcCCCEEE-------EEeccCC--------HHHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHcCCCEEEEC-CCCcc-
Confidence 999999874 3332211 112236899999999999999999999999999999999987 43321
Q ss_pred ccccccccCHHHHHHHHHHHHHHHHHhCCCeEEEEccCCCCCHHHHHHHHhhCCCccEEecCcccccchHHHHHHHHHHh
Q 004491 663 SIGAKTALSLDESVDRVQAIADAAHRINPDAIVLCHGGPISSPSEAEFILKRTKGVHGFYGASSMERLPVEQAITSTMRQ 742 (749)
Q Consensus 663 ~~Ga~~~~sl~~~~~~~~~i~~aa~~~~pdii~l~hGGPi~~p~d~~~~l~~~~~~~Gf~g~Ss~ERlP~E~ai~~~~~~ 742 (749)
. ....++ ...++ +..+..++.+++-|| |.+|+|+.++++. +++|++-+|++=|-+- +++.+++
T Consensus 193 ~----~~~d~~----~~~~l---~~~~p~~~~vIaegG-I~t~ed~~~~~~~--Gad~vlVGsaI~~~~d---p~~~~~~ 255 (260)
T PRK00278 193 T----FEVDLE----TTERL---APLIPSDRLVVSESG-IFTPEDLKRLAKA--GADAVLVGESLMRADD---PGAALRE 255 (260)
T ss_pred c----ccCCHH----HHHHH---HHhCCCCCEEEEEeC-CCCHHHHHHHHHc--CCCEEEECHHHcCCCC---HHHHHHH
Confidence 0 012233 33444 333434556666544 8899999999954 7899999999776543 3444455
Q ss_pred hcc
Q 004491 743 YKS 745 (749)
Q Consensus 743 FK~ 745 (749)
|+.
T Consensus 256 l~~ 258 (260)
T PRK00278 256 LLG 258 (260)
T ss_pred Hhc
Confidence 543
No 8
>cd00331 IGPS Indole-3-glycerol phosphate synthase (IGPS); an enzyme in the tryptophan biosynthetic pathway, catalyzing the ring closure reaction of 1-(o-carboxyphenylamino)-1-deoxyribulose-5-phosphate (CdRP) to indole-3-glycerol phosphate (IGP), accompanied by the release of carbon dioxide and water. IGPS is active as a separate monomer in most organisms, but is also found fused to other enzymes as part of a bifunctional or multifunctional enzyme involved in tryptophan biosynthesis.
Probab=98.17 E-value=0.00012 Score=74.02 Aligned_cols=171 Identities=21% Similarity=0.266 Sum_probs=109.9
Q ss_pred hhhhhhhhcCCcEEEEeccccccccCCccccccccccCchHHHHHhhhhhcCCCCCCceEEeeccCCCCCCHHHHHHHHH
Q 004491 504 ISAKFEEAGGVDLIVLYNSGRFRMAGRGSLAGLLPFADANAVVLEMANEVLPVVKEVPVLAGVCGTDPFRRVDYFLKQLE 583 (749)
Q Consensus 504 lsAk~ae~gGaDli~~ynsGrfR~~G~~SlagllpygdaN~iv~e~~~eilp~v~~tPViaGv~atDP~~~~~~~l~~lk 583 (749)
-.|+..+.+|||.|-+..--.+ |+.+.+.+....+. + ++||+.+ | |..-+.++++++
T Consensus 35 ~~A~~~~~~GA~~l~v~~~~~~-------------~~g~~~~~~~i~~~----v-~iPi~~~----~-~i~~~~~v~~~~ 91 (217)
T cd00331 35 EIAKAYEKAGAAAISVLTEPKY-------------FQGSLEDLRAVREA----V-SLPVLRK----D-FIIDPYQIYEAR 91 (217)
T ss_pred HHHHHHHHcCCCEEEEEeCccc-------------cCCCHHHHHHHHHh----c-CCCEEEC----C-eecCHHHHHHHH
Confidence 3688899999999955322111 11222223222232 2 6899975 3 333345899999
Q ss_pred HcCccceecC-CcccccchhhhhhhhhcCCchHHHHHHHHHHHHcCCcccccccCHHHHHHHHhccCcEEEeccCCCccc
Q 004491 584 SIGFFGVQNF-PTVGLFDGNFRQNLEETGMGYGLEVEMIDKAHKMGLLTTPYAFNEGEAVKMAKAGADIIVAHMGLTTSG 662 (749)
Q Consensus 584 ~~Gf~GV~Nf-PTvgliDG~fR~~LEe~G~gy~~EVemi~~A~~~gl~T~~yvf~~eqa~~Ma~AGaDiiv~h~GlT~gG 662 (749)
+.|..||.=. +... ...+ -++++.++..|+-+++.+.+.+|+++..+.|+|+++.| +.+
T Consensus 92 ~~Gad~v~l~~~~~~--~~~~--------------~~~~~~~~~~g~~~~v~v~~~~e~~~~~~~g~~~i~~t-~~~--- 151 (217)
T cd00331 92 AAGADAVLLIVAALD--DEQL--------------KELYELARELGMEVLVEVHDEEELERALALGAKIIGIN-NRD--- 151 (217)
T ss_pred HcCCCEEEEeeccCC--HHHH--------------HHHHHHHHHcCCeEEEEECCHHHHHHHHHcCCCEEEEe-CCC---
Confidence 9999999521 1000 0111 35567778999999999999999999999999999887 322
Q ss_pred ccccccccCHHHHHHHHHHHHHHHHHhCCCeEEEEccCCCCCHHHHHHHHhhCCCccEEecCccccc
Q 004491 663 SIGAKTALSLDESVDRVQAIADAAHRINPDAIVLCHGGPISSPSEAEFILKRTKGVHGFYGASSMER 729 (749)
Q Consensus 663 ~~Ga~~~~sl~~~~~~~~~i~~aa~~~~pdii~l~hGGPi~~p~d~~~~l~~~~~~~Gf~g~Ss~ER 729 (749)
+......+ +.++++ .+.+.+++ .++-+|-|.+|+|++.+++. +++|++-+|++=+
T Consensus 152 --~~~~~~~~----~~~~~l---~~~~~~~~-pvia~gGI~s~edi~~~~~~--Ga~gvivGsai~~ 206 (217)
T cd00331 152 --LKTFEVDL----NTTERL---APLIPKDV-ILVSESGISTPEDVKRLAEA--GADAVLIGESLMR 206 (217)
T ss_pred --ccccCcCH----HHHHHH---HHhCCCCC-EEEEEcCCCCHHHHHHHHHc--CCCEEEECHHHcC
Confidence 11222222 333444 33333444 44556669999999999854 7899999999544
No 9
>TIGR02320 PEP_mutase phosphoenolpyruvate phosphomutase. A closely related enzyme, phosphonopyruvate hydrolase from Variovorax sp. Pal2, is excluded from this model.
Probab=97.98 E-value=0.00017 Score=77.25 Aligned_cols=203 Identities=16% Similarity=0.089 Sum_probs=124.1
Q ss_pred HHHHhhcCCCeEEeccccchhhhhhhhc---------CCcEEEEeccccccccCCccccccccccCchHHHHHhhhhhcC
Q 004491 485 LKYQIDKGLPIIGAGAGTGISAKFEEAG---------GVDLIVLYNSGRFRMAGRGSLAGLLPFADANAVVLEMANEVLP 555 (749)
Q Consensus 485 L~~~i~~~~piig~gaGtGlsAk~ae~g---------GaDli~~ynsGrfR~~G~~SlagllpygdaN~iv~e~~~eilp 555 (749)
||+.++++.|++-.++--++|||.+|+. |.|-|-+=..|.--+.|.+-. +++++ +-+++..+.|.+
T Consensus 1 lr~~l~~~~~l~~p~~~D~~SA~~~e~~~~~~~~~~~Gf~ai~~ss~~~a~s~G~pD~-~~~~~----~e~~~~~~~I~~ 75 (285)
T TIGR02320 1 LRQLLHSKPLERLMEAHNGLSALIAEEARVEVGGESLGFDGIWSSSLTDSTSRGVPDI-EEASW----TQRLDVVEFMFD 75 (285)
T ss_pred ChHHhcCCCCEEEecCcCHHHHHHHHHhhhcccCcCCCcCEEEechHHHHHHCCCCCc-CcCCH----HHHHHHHHHHHh
Confidence 6888999999999999999999999999 999777533333222232211 23332 223345678888
Q ss_pred CCCCCceEEeeccCCCCCCHHHHHHHHHHcCccceec----CCcccccchhhhhhhhhcCCchHHHHHHHHHHHHc----
Q 004491 556 VVKEVPVLAGVCGTDPFRRVDYFLKQLESIGFFGVQN----FPTVGLFDGNFRQNLEETGMGYGLEVEMIDKAHKM---- 627 (749)
Q Consensus 556 ~v~~tPViaGv~atDP~~~~~~~l~~lk~~Gf~GV~N----fPTvgliDG~fR~~LEe~G~gy~~EVemi~~A~~~---- 627 (749)
.+ ++||++=.-...=..++.+..+++.+.|.+||+= ||--+-.-|. .=|..=+..+.=++.|+.|++.
T Consensus 76 a~-~~Pv~~D~d~Gg~~~~v~r~V~~l~~aGvaGi~iEDq~~pk~cg~~~~---~~~~~l~s~ee~~~kI~Aa~~a~~~~ 151 (285)
T TIGR02320 76 VT-TKPIILDGDTGGNFEHFRRLVRKLERRGVSAVCIEDKLGLKKNSLFGN---DVAQPQASVEEFCGKIRAGKDAQTTE 151 (285)
T ss_pred hc-CCCEEEecCCCCCHHHHHHHHHHHHHcCCeEEEEeccCCCccccccCC---CCcccccCHHHHHHHHHHHHHhccCC
Confidence 87 5999987655533356777899999999999986 6764332221 0011123455557777777654
Q ss_pred CCccccc----c--cCH----HHHHHHHhccCcEEEeccCCCcccccccccccCHHHHHHHHHHHHHHHHHhCCCeEEEE
Q 004491 628 GLLTTPY----A--FNE----GEAVKMAKAGADIIVAHMGLTTSGSIGAKTALSLDESVDRVQAIADAAHRINPDAIVLC 697 (749)
Q Consensus 628 gl~T~~y----v--f~~----eqa~~Ma~AGaDiiv~h~GlT~gG~~Ga~~~~sl~~~~~~~~~i~~aa~~~~pdii~l~ 697 (749)
+++-++= + ... +-|++..+||||+|.++.++ .|.++..+..+ .....-|++-+++
T Consensus 152 ~~~IiARTDa~~~~~~~~eAi~Ra~ay~eAGAD~ifv~~~~-----------~~~~ei~~~~~----~~~~~~p~~pl~~ 216 (285)
T TIGR02320 152 DFMIIARVESLILGKGMEDALKRAEAYAEAGADGIMIHSRK-----------KDPDEILEFAR----RFRNHYPRTPLVI 216 (285)
T ss_pred CeEEEEecccccccCCHHHHHHHHHHHHHcCCCEEEecCCC-----------CCHHHHHHHHH----HhhhhCCCCCEEE
Confidence 4543332 2 223 44577789999999999432 24444443333 3333334433344
Q ss_pred ccC--CCCCHHHHHHH
Q 004491 698 HGG--PISSPSEAEFI 711 (749)
Q Consensus 698 hGG--Pi~~p~d~~~~ 711 (749)
..+ |..++++.+.+
T Consensus 217 ~~~~~~~~~~~eL~~l 232 (285)
T TIGR02320 217 VPTSYYTTPTDEFRDA 232 (285)
T ss_pred ecCCCCCCCHHHHHHc
Confidence 332 55566665544
No 10
>cd06556 ICL_KPHMT Members of the ICL/PEPM_KPHMT enzyme superfamily catalyze the formation and cleavage of either P-C or C-C bonds. Typical members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), 2-methylisocitrate lyase (MICL), and ketopantoate hydroxymethyltransferase (KPHMT).
Probab=97.98 E-value=9.7e-05 Score=77.36 Aligned_cols=99 Identities=14% Similarity=0.036 Sum_probs=72.2
Q ss_pred HHHHHHhhcCCCeEEeccccchhhhhhhhcCCcEEEEeccccccccCCccccccccccCchHHHHHh----hhhhcCCCC
Q 004491 483 SKLKYQIDKGLPIIGAGAGTGISAKFEEAGGVDLIVLYNSGRFRMAGRGSLAGLLPFADANAVVLEM----ANEVLPVVK 558 (749)
Q Consensus 483 ~~L~~~i~~~~piig~gaGtGlsAk~ae~gGaDli~~ynsGrfR~~G~~SlagllpygdaN~iv~e~----~~eilp~v~ 558 (749)
..|+++-++|+||+..++=-.+||+.+|+.|.|.|.+ |-+..+..+.|-|-+.+.++. ++.|.-.++
T Consensus 2 ~~~~~~~~~~~~i~~~~ayD~~sA~i~e~aG~dai~v---------~~s~~a~~~G~pD~~~vtl~em~~~~~~I~r~~~ 72 (240)
T cd06556 2 WLLQKYKQEKERFATLTAYDYSMAKQFADAGLNVMLV---------GDSQGMTVAGYDDTLPYPVNDVPYHVRAVRRGAP 72 (240)
T ss_pred HhHHHHHhCCCeEEEecCCCHHHHHHHHHcCCCEEEE---------ChHHHHHhcCCCCCCCcCHHHHHHHHHHHHhhCC
Confidence 4566666889999999999999999999999999995 333445556777776555443 355666666
Q ss_pred CCceEEeec---cCCCCCCHHHHHHHHHHcCcccee
Q 004491 559 EVPVLAGVC---GTDPFRRVDYFLKQLESIGFFGVQ 591 (749)
Q Consensus 559 ~tPViaGv~---atDP~~~~~~~l~~lk~~Gf~GV~ 591 (749)
..||++=+- +.+| .+.-+..+++.+.|.+||.
T Consensus 73 ~~pviaD~~~G~g~~~-~~~~~~~~~l~~aGa~gv~ 107 (240)
T cd06556 73 LALIVADLPFGAYGAP-TAAFELAKTFMRAGAAGVK 107 (240)
T ss_pred CCCEEEeCCCCCCcCH-HHHHHHHHHHHHcCCcEEE
Confidence 678887532 1233 4566667888889999985
No 11
>PRK13111 trpA tryptophan synthase subunit alpha; Provisional
Probab=97.89 E-value=0.00034 Score=73.99 Aligned_cols=165 Identities=24% Similarity=0.286 Sum_probs=111.5
Q ss_pred HHHhhhhhcCCCCCCceEEeeccCCCCC-CHHHHHHHHHHcCccceecCCcccccchhhhhhhhhcCCchHHHHHHHHHH
Q 004491 546 VLEMANEVLPVVKEVPVLAGVCGTDPFR-RVDYFLKQLESIGFFGVQNFPTVGLFDGNFRQNLEETGMGYGLEVEMIDKA 624 (749)
Q Consensus 546 v~e~~~eilp~v~~tPViaGv~atDP~~-~~~~~l~~lk~~Gf~GV~NfPTvgliDG~fR~~LEe~G~gy~~EVemi~~A 624 (749)
++++.+++-..-.++|++.=...+.-|. .+++|++++++.|+.||.= | ++.++.--+++..|
T Consensus 76 ~~~~~~~~r~~~~~~p~vlm~Y~N~i~~~G~e~f~~~~~~aGvdGvii-p----------------DLp~ee~~~~~~~~ 138 (258)
T PRK13111 76 VFELVREIREKDPTIPIVLMTYYNPIFQYGVERFAADAAEAGVDGLII-P----------------DLPPEEAEELRAAA 138 (258)
T ss_pred HHHHHHHHHhcCCCCCEEEEecccHHhhcCHHHHHHHHHHcCCcEEEE-C----------------CCCHHHHHHHHHHH
Confidence 4666666553345689663233343354 7999999999999999874 4 56677566888999
Q ss_pred HHcCCccccccc---CHHHHHHHHhccCcEE--EeccCCCcccccccccc--cCHHHHHHHHHHHHHHHHHhCCCeEEEE
Q 004491 625 HKMGLLTTPYAF---NEGEAVKMAKAGADII--VAHMGLTTSGSIGAKTA--LSLDESVDRVQAIADAAHRINPDAIVLC 697 (749)
Q Consensus 625 ~~~gl~T~~yvf---~~eqa~~Ma~AGaDii--v~h~GlT~gG~~Ga~~~--~sl~~~~~~~~~i~~aa~~~~pdii~l~ 697 (749)
++.||-.+++|- +++..+.+++..-+.| +.++|.| |.++. ..+++.+ +.+++.. ++-+++
T Consensus 139 ~~~gl~~I~lvap~t~~eri~~i~~~s~gfIY~vs~~GvT-----G~~~~~~~~~~~~i-------~~vk~~~-~~pv~v 205 (258)
T PRK13111 139 KKHGLDLIFLVAPTTTDERLKKIASHASGFVYYVSRAGVT-----GARSADAADLAELV-------ARLKAHT-DLPVAV 205 (258)
T ss_pred HHcCCcEEEEeCCCCCHHHHHHHHHhCCCcEEEEeCCCCC-----CcccCCCccHHHHH-------HHHHhcC-CCcEEE
Confidence 999999988664 3477888888888876 4566654 33322 2344333 3344444 344444
Q ss_pred ccCCCCCHHHHHHHHhhCCCccEEecCcccccchHH-----HHHHHHHHhhc
Q 004491 698 HGGPISSPSEAEFILKRTKGVHGFYGASSMERLPVE-----QAITSTMRQYK 744 (749)
Q Consensus 698 hGGPi~~p~d~~~~l~~~~~~~Gf~g~Ss~ERlP~E-----~ai~~~~~~FK 744 (749)
|+-|++|+|++.+++. +||.+-||++=|.=-| ..+.+-++++|
T Consensus 206 -GfGI~~~e~v~~~~~~---ADGviVGSaiv~~~~~~~~~~~~~~~~~~~l~ 253 (258)
T PRK13111 206 -GFGISTPEQAAAIAAV---ADGVIVGSALVKIIEENPEALEALAAFVKELK 253 (258)
T ss_pred -EcccCCHHHHHHHHHh---CCEEEEcHHHHHHHHhcchHHHHHHHHHHHHH
Confidence 9999999999999854 6999999998555332 45555555554
No 12
>cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA). TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan.
Probab=97.86 E-value=0.00056 Score=71.27 Aligned_cols=152 Identities=22% Similarity=0.314 Sum_probs=94.9
Q ss_pred HHHHhhhhhcCCCCCCceEEeeccC-CCCCC--HHHHHHHHHHcCccceecCCcccccchhhhhhhhhcCCchHHHHHHH
Q 004491 545 VVLEMANEVLPVVKEVPVLAGVCGT-DPFRR--VDYFLKQLESIGFFGVQNFPTVGLFDGNFRQNLEETGMGYGLEVEMI 621 (749)
Q Consensus 545 iv~e~~~eilp~v~~tPViaGv~at-DP~~~--~~~~l~~lk~~Gf~GV~NfPTvgliDG~fR~~LEe~G~gy~~EVemi 621 (749)
..+++.+++-..+ ++||+ +... +|+.. +++|++++++.|+.||. +|- +-|+.--+++
T Consensus 63 ~~~~~~~~vr~~~-~~pv~--lm~y~n~~~~~G~~~fi~~~~~aG~~gii-ipD----------------l~~ee~~~~~ 122 (242)
T cd04724 63 DVLELVKEIRKKN-TIPIV--LMGYYNPILQYGLERFLRDAKEAGVDGLI-IPD----------------LPPEEAEEFR 122 (242)
T ss_pred HHHHHHHHHhhcC-CCCEE--EEEecCHHHHhCHHHHHHHHHHCCCcEEE-ECC----------------CCHHHHHHHH
Confidence 3445555555544 68965 4445 88766 49999999999999986 331 1233233799
Q ss_pred HHHHHcCCcccccc---cCHHHHHHHHhccCcEE-E-eccCCCcccccccccccCHHHHHHHHHHHHHHHHHhCCCeEEE
Q 004491 622 DKAHKMGLLTTPYA---FNEGEAVKMAKAGADII-V-AHMGLTTSGSIGAKTALSLDESVDRVQAIADAAHRINPDAIVL 696 (749)
Q Consensus 622 ~~A~~~gl~T~~yv---f~~eqa~~Ma~AGaDii-v-~h~GlT~gG~~Ga~~~~sl~~~~~~~~~i~~aa~~~~pdii~l 696 (749)
+++++.|+-.+.++ .+++..+..++...|.+ + ...|. +|+..+. ..++.+ +++++.+ . .++-++
T Consensus 123 ~~~~~~g~~~i~~i~P~T~~~~i~~i~~~~~~~vy~~s~~g~-tG~~~~~--~~~~~~---~i~~lr~----~-~~~pI~ 191 (242)
T cd04724 123 EAAKEYGLDLIFLVAPTTPDERIKKIAELASGFIYYVSRTGV-TGARTEL--PDDLKE---LIKRIRK----Y-TDLPIA 191 (242)
T ss_pred HHHHHcCCcEEEEeCCCCCHHHHHHHHhhCCCCEEEEeCCCC-CCCccCC--ChhHHH---HHHHHHh----c-CCCcEE
Confidence 99999998665544 45567777777445533 3 23333 3333222 123333 3333332 2 144444
Q ss_pred EccCCCCCHHHHHHHHhhCCCccEEecCcccccch
Q 004491 697 CHGGPISSPSEAEFILKRTKGVHGFYGASSMERLP 731 (749)
Q Consensus 697 ~hGGPi~~p~d~~~~l~~~~~~~Gf~g~Ss~ERlP 731 (749)
+ ||-|+++++++.+.+. ++|++-||++=|+=
T Consensus 192 v-ggGI~~~e~~~~~~~~---ADgvVvGSaiv~~~ 222 (242)
T cd04724 192 V-GFGISTPEQAAEVAKY---ADGVIVGSALVKII 222 (242)
T ss_pred E-EccCCCHHHHHHHHcc---CCEEEECHHHHHHH
Confidence 4 8889999999998854 68999999985543
No 13
>PLN02591 tryptophan synthase
Probab=97.79 E-value=0.00057 Score=72.13 Aligned_cols=168 Identities=23% Similarity=0.333 Sum_probs=110.9
Q ss_pred HHHHhhhhhcCCCCCCceEEeeccCCCCC-CHHHHHHHHHHcCccceecCCcccccchhhhhhhhhcCCchHHHHHHHHH
Q 004491 545 VVLEMANEVLPVVKEVPVLAGVCGTDPFR-RVDYFLKQLESIGFFGVQNFPTVGLFDGNFRQNLEETGMGYGLEVEMIDK 623 (749)
Q Consensus 545 iv~e~~~eilp~v~~tPViaGv~atDP~~-~~~~~l~~lk~~Gf~GV~NfPTvgliDG~fR~~LEe~G~gy~~EVemi~~ 623 (749)
-++++.+++-.. .++|++.=...+.-|. -+++|++++++.|+.||. .| .+-|+.--++..+
T Consensus 65 ~~~~~~~~~r~~-~~~p~ilm~Y~N~i~~~G~~~F~~~~~~aGv~Gvi-ip----------------DLP~ee~~~~~~~ 126 (250)
T PLN02591 65 SVISMLKEVAPQ-LSCPIVLFTYYNPILKRGIDKFMATIKEAGVHGLV-VP----------------DLPLEETEALRAE 126 (250)
T ss_pred HHHHHHHHHhcC-CCCCEEEEecccHHHHhHHHHHHHHHHHcCCCEEE-eC----------------CCCHHHHHHHHHH
Confidence 356666676655 3589663333333454 799999999999999987 33 4567777799999
Q ss_pred HHHcCCcccccc-cCH--HHHHHHHhccCcEEE--eccCCCcccccccccccCHHHHHHHHHHHHHHHHHhCCCeEEEEc
Q 004491 624 AHKMGLLTTPYA-FNE--GEAVKMAKAGADIIV--AHMGLTTSGSIGAKTALSLDESVDRVQAIADAAHRINPDAIVLCH 698 (749)
Q Consensus 624 A~~~gl~T~~yv-f~~--eqa~~Ma~AGaDiiv--~h~GlT~gG~~Ga~~~~sl~~~~~~~~~i~~aa~~~~pdii~l~h 698 (749)
|++.||-++.+| -|. +..++.++..-+.|. ..+|.| |.++... ..++++.+.+++. .++-++|
T Consensus 127 ~~~~gl~~I~lv~Ptt~~~ri~~ia~~~~gFIY~Vs~~GvT-----G~~~~~~-----~~~~~~i~~vk~~-~~~Pv~v- 194 (250)
T PLN02591 127 AAKNGIELVLLTTPTTPTERMKAIAEASEGFVYLVSSTGVT-----GARASVS-----GRVESLLQELKEV-TDKPVAV- 194 (250)
T ss_pred HHHcCCeEEEEeCCCCCHHHHHHHHHhCCCcEEEeeCCCCc-----CCCcCCc-----hhHHHHHHHHHhc-CCCceEE-
Confidence 999999999999 444 447777777666654 355555 4333321 1123333334444 3554554
Q ss_pred cCCCCCHHHHHHHHhhCCCccEEecCccc-ccc----hHH---HHHHHHHHhhc
Q 004491 699 GGPISSPSEAEFILKRTKGVHGFYGASSM-ERL----PVE---QAITSTMRQYK 744 (749)
Q Consensus 699 GGPi~~p~d~~~~l~~~~~~~Gf~g~Ss~-ERl----P~E---~ai~~~~~~FK 744 (749)
|--|++|+|++.+++. ++||.+-||.+ .++ ..+ +.+.+-++++|
T Consensus 195 GFGI~~~e~v~~~~~~--GADGvIVGSalVk~i~~~~~~~~~~~~~~~~~~~l~ 246 (250)
T PLN02591 195 GFGISKPEHAKQIAGW--GADGVIVGSAMVKALGEAKSPEEGLKRLEKLAKSLK 246 (250)
T ss_pred eCCCCCHHHHHHHHhc--CCCEEEECHHHHHhhhhccChhHHHHHHHHHHHHHH
Confidence 8899999999998843 57999999999 433 122 34555555554
No 14
>TIGR02321 Pphn_pyruv_hyd phosphonopyruvate hydrolase. This family consists of phosphonopyruvate hydrolase, an enzyme closely related to phosphoenolpyruvate phosphomutase. It cleaves the direct C-P bond of phosphonopyruvate. The characterized example is from Variovorax sp. Pal2.
Probab=97.78 E-value=0.00078 Score=72.53 Aligned_cols=163 Identities=22% Similarity=0.255 Sum_probs=100.1
Q ss_pred HHHHHHhhcCCCeEEeccccchhhhhhhhcCCcEEEEeccccccccCCccccccccccCchHHHHHhhhhhcCCCCCCce
Q 004491 483 SKLKYQIDKGLPIIGAGAGTGISAKFEEAGGVDLIVLYNSGRFRMAGRGSLAGLLPFADANAVVLEMANEVLPVVKEVPV 562 (749)
Q Consensus 483 ~~L~~~i~~~~piig~gaGtGlsAk~ae~gGaDli~~ynsGrfR~~G~~SlagllpygdaN~iv~e~~~eilp~v~~tPV 562 (749)
++||++++++.+++.-|+--+||||.+|+.|.|-|-+=.+|.=-..|.+- .+++++.+-- +..++|.-.+ ++||
T Consensus 5 ~~lr~~l~~~~~~~~pg~~D~lSAri~e~aGf~ai~~ss~~va~slG~pD-~g~l~~~e~~----~~~~~I~~~~-~lPv 78 (290)
T TIGR02321 5 QALRAALDSGRLFTAMAAHNPLVAKLAEQAGFGGIWGSGFELSASYAVPD-ANILSMSTHL----EMMRAIASTV-SIPL 78 (290)
T ss_pred HHHHHHHhCCCCEEeccccCHHHHHHHHHcCCCEEEECHHHHHHHCCCCC-cccCCHHHHH----HHHHHHHhcc-CCCE
Confidence 47999999999999999999999999999999966643333221123221 2444444333 3345566666 6899
Q ss_pred EEeecc--CCCCCCHHHHHHHHHHcCcccee----cCCcccc-c-chhhhhhhhhcCCchHHHHHHHHHHHHc----CCc
Q 004491 563 LAGVCG--TDPFRRVDYFLKQLESIGFFGVQ----NFPTVGL-F-DGNFRQNLEETGMGYGLEVEMIDKAHKM----GLL 630 (749)
Q Consensus 563 iaGv~a--tDP~~~~~~~l~~lk~~Gf~GV~----NfPTvgl-i-DG~fR~~LEe~G~gy~~EVemi~~A~~~----gl~ 630 (749)
++=+-. .||- ++.+-.+++.+.|.+||+ -||--.- . +|. +.| ..-+.=++-|+.|++. +|+
T Consensus 79 ~aD~d~GyG~~~-~v~~tV~~~~~aGvagi~IEDq~~pk~cg~~~~g~--~~l----~~~ee~~~kI~Aa~~a~~~~d~~ 151 (290)
T TIGR02321 79 IADIDTGFGNAV-NVHYVVPQYEAAGASAIVMEDKTFPKDTSLRTDGR--QEL----VRIEEFQGKIAAATAARADRDFV 151 (290)
T ss_pred EEECCCCCCCcH-HHHHHHHHHHHcCCeEEEEeCCCCCcccccccCCC--ccc----cCHHHHHHHHHHHHHhCCCCCEE
Confidence 986422 2444 799999999999999996 2333211 0 110 001 1122224556655543 233
Q ss_pred c----cccc--cCHHH----HHHHHhccCcEEEeccCC
Q 004491 631 T----TPYA--FNEGE----AVKMAKAGADIIVAHMGL 658 (749)
Q Consensus 631 T----~~yv--f~~eq----a~~Ma~AGaDiiv~h~Gl 658 (749)
= =+|. ...+| +++.++||||+|.+|.++
T Consensus 152 I~ARTDa~~~~~g~deAI~Ra~aY~eAGAD~ifv~~~~ 189 (290)
T TIGR02321 152 VIARVEALIAGLGQQEAVRRGQAYEEAGADAILIHSRQ 189 (290)
T ss_pred EEEEeccccccCCHHHHHHHHHHHHHcCCCEEEecCCC
Confidence 2 2231 12233 467789999999999653
No 15
>cd00377 ICL_PEPM Members of the ICL/PEPM enzyme family catalyze either P-C or C-C bond formation/cleavage. Known members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), and 2-methylisocitrate lyase (MICL). Isocitrate lyase (ICL) catalyzes the conversion of isocitrate to succinate and glyoxylate, the first committed step in the glyoxylate pathway. This carbon-conserving pathway is present in most prokaryotes, lower eukaryotes and plants, but has not been observed in vertebrates. PEP mutase (PEPM) turns phosphoenolpyruvate (PEP) into phosphonopyruvate (P-pyr), an important intermediate in the formation of organophosphonates, which function as antibiotics or play a role in pathogenesis or signaling. P-pyr can be hydrolyzed by phosphonopyruvate hydrolase (PPH) to from pyruvate and phosphate. Oxaloacetate acetylhydrolase (OAH) catalyzes the hydrolytic cleavage of oxaloacetate to
Probab=97.69 E-value=0.00064 Score=71.10 Aligned_cols=190 Identities=22% Similarity=0.214 Sum_probs=120.3
Q ss_pred HHHHhhcCCCeEEeccccchhhhhhhhcCCcEEEEeccccccccCCccccccccccCchHHH----HHhhhhhcCCCCCC
Q 004491 485 LKYQIDKGLPIIGAGAGTGISAKFEEAGGVDLIVLYNSGRFRMAGRGSLAGLLPFADANAVV----LEMANEVLPVVKEV 560 (749)
Q Consensus 485 L~~~i~~~~piig~gaGtGlsAk~ae~gGaDli~~ynsGrfR~~G~~SlagllpygdaN~iv----~e~~~eilp~v~~t 560 (749)
||+.+++++||+-.++--++|||.+|+.|.|.|.+=. ...+.-+.|-|-+.+. .+.++.|.+.+ ++
T Consensus 1 ~r~l~~~~~~i~~~~~~D~~sA~~~e~~G~~ai~~s~---------~~~~~s~G~pD~~~~~~~e~~~~~~~I~~~~-~~ 70 (243)
T cd00377 1 LRALLESGGPLVLPGAWDALSARLAERAGFKAIYTSG---------AGVAASLGLPDGGLLTLDEVLAAVRRIARAV-DL 70 (243)
T ss_pred ChhHHhCCCcEEecCCCCHHHHHHHHHcCCCEEEecc---------HHHHHhcCCCCCCcCCHHHHHHHHHHHHhhc-cC
Confidence 4677788999999999999999999999999998533 3333334666665544 33446677776 47
Q ss_pred ceEEeec--cCCCCCCHHHHHHHHHHcCccceec----CCcc-cccchhhhhhhhhcCCchHHHHHHHHHHHH---c--C
Q 004491 561 PVLAGVC--GTDPFRRVDYFLKQLESIGFFGVQN----FPTV-GLFDGNFRQNLEETGMGYGLEVEMIDKAHK---M--G 628 (749)
Q Consensus 561 PViaGv~--atDP~~~~~~~l~~lk~~Gf~GV~N----fPTv-gliDG~fR~~LEe~G~gy~~EVemi~~A~~---~--g 628 (749)
||++=.- -.|+ .+..+..+++.+.|.+||.= +|.- |... |..=+..+.-++.|+.|++ . +
T Consensus 71 Pv~~D~~~G~g~~-~~~~~~v~~~~~~G~~gv~iED~~~~k~~g~~~-------~~~~~~~ee~~~ki~aa~~a~~~~~~ 142 (243)
T cd00377 71 PVIADADTGYGNA-LNVARTVRELEEAGAAGIHIEDQVGPKKCGHHG-------GKVLVPIEEFVAKIKAARDARDDLPD 142 (243)
T ss_pred CEEEEcCCCCCCH-HHHHHHHHHHHHcCCEEEEEecCCCCccccCCC-------CCeecCHHHHHHHHHHHHHHHhccCC
Confidence 8876321 1255 56777788999999999964 3331 1111 2233456666777766655 2 5
Q ss_pred Cccccc-----c--cCHH----HHHHHHhccCcEEEeccCCCcccccccccccCHHHHHHHHHHHHHHHHHhCCCeEEEE
Q 004491 629 LLTTPY-----A--FNEG----EAVKMAKAGADIIVAHMGLTTSGSIGAKTALSLDESVDRVQAIADAAHRINPDAIVLC 697 (749)
Q Consensus 629 l~T~~y-----v--f~~e----qa~~Ma~AGaDiiv~h~GlT~gG~~Ga~~~~sl~~~~~~~~~i~~aa~~~~pdii~l~ 697 (749)
++-++= + ...+ -+++..+||||++.+|... +.++ ++++ +++.+-=+++++
T Consensus 143 ~~IiARTDa~~~~~~~~~eai~Ra~ay~~AGAD~v~v~~~~------------~~~~----~~~~---~~~~~~Pl~~~~ 203 (243)
T cd00377 143 FVIIARTDALLAGEEGLDEAIERAKAYAEAGADGIFVEGLK------------DPEE----IRAF---AEAPDVPLNVNM 203 (243)
T ss_pred eEEEEEcCchhccCCCHHHHHHHHHHHHHcCCCEEEeCCCC------------CHHH----HHHH---HhcCCCCEEEEe
Confidence 665544 3 3444 4566789999999998442 3332 3333 333444455555
Q ss_pred ccCCC-CCHHHHHHH
Q 004491 698 HGGPI-SSPSEAEFI 711 (749)
Q Consensus 698 hGGPi-~~p~d~~~~ 711 (749)
..++- -++++++.+
T Consensus 204 ~~~~~~~~~~~l~~l 218 (243)
T cd00377 204 TPGGNLLTVAELAEL 218 (243)
T ss_pred cCCCCCCCHHHHHHC
Confidence 55542 366666554
No 16
>PRK11320 prpB 2-methylisocitrate lyase; Provisional
Probab=97.67 E-value=0.0014 Score=70.75 Aligned_cols=202 Identities=19% Similarity=0.215 Sum_probs=116.9
Q ss_pred cccHHHHHHHHHHHhhcCCCeEEeccccchhhhhhhhcCCcEEEEeccccc-cccCCccccccccccCchHHHHHhhhhh
Q 004491 475 LQRTQAILSKLKYQIDKGLPIIGAGAGTGISAKFEEAGGVDLIVLYNSGRF-RMAGRGSLAGLLPFADANAVVLEMANEV 553 (749)
Q Consensus 475 ~~~r~~il~~L~~~i~~~~piig~gaGtGlsAk~ae~gGaDli~~ynsGrf-R~~G~~SlagllpygdaN~iv~e~~~ei 553 (749)
||++. .+||+.+++++|++-.++--++|||.+|+.|.|-|-+=.+|.= -+.|.+-+ +++++.. +++.++.|
T Consensus 2 ~~~~~---~~lr~ll~~~~~l~~p~~~Da~SAri~e~~Gf~ai~~Sg~~~a~~~lG~PD~-g~l~~~e----~~~~~~~I 73 (292)
T PRK11320 2 LHSAG---ARFRAALAAEKPLQIVGTINAYHALLAERAGFKAIYLSGGGVAAASLGLPDL-GITTLDD----VLIDVRRI 73 (292)
T ss_pred CCCHH---HHHHHHHcCCCcEEecCCCCHHHHHHHHHcCCCEEEeCHHHHHhHhcCCCCC-CCCCHHH----HHHHHHHH
Confidence 56654 4588888999999999999999999999999997764333221 22232222 2344332 34455666
Q ss_pred cCCCCCCceEEeeccC--CCCCCHHHHHHHHHHcCccceec----CCccc-ccchhhhhhhhhcCCchHHHHHHHHHHHH
Q 004491 554 LPVVKEVPVLAGVCGT--DPFRRVDYFLKQLESIGFFGVQN----FPTVG-LFDGNFRQNLEETGMGYGLEVEMIDKAHK 626 (749)
Q Consensus 554 lp~v~~tPViaGv~at--DP~~~~~~~l~~lk~~Gf~GV~N----fPTvg-liDG~fR~~LEe~G~gy~~EVemi~~A~~ 626 (749)
.-.+ ++||++=+-.. +|. ++.+..+++.+.|.+||+= ||--+ ...|+ .| +..+.=++-|+.|++
T Consensus 74 ~~~~-~iPviaD~d~GyG~~~-~v~r~V~~~~~aGaagi~IEDq~~pK~cg~~~~~---~l----v~~ee~~~kI~Aa~~ 144 (292)
T PRK11320 74 TDAC-DLPLLVDIDTGFGGAF-NIARTVKSMIKAGAAAVHIEDQVGAKRCGHRPNK---EI----VSQEEMVDRIKAAVD 144 (292)
T ss_pred Hhcc-CCCEEEECCCCCCCHH-HHHHHHHHHHHcCCeEEEEecCCCccccCCCCCC---cc----cCHHHHHHHHHHHHH
Confidence 6666 48999853221 555 6778899999999999962 33221 11111 11 122222444444444
Q ss_pred c----CCcccc----cc-cCH----HHHHHHHhccCcEEEeccCCCcccccccccccCHHHHHHHHHHHHHHHHHhCCCe
Q 004491 627 M----GLLTTP----YA-FNE----GEAVKMAKAGADIIVAHMGLTTSGSIGAKTALSLDESVDRVQAIADAAHRINPDA 693 (749)
Q Consensus 627 ~----gl~T~~----yv-f~~----eqa~~Ma~AGaDiiv~h~GlT~gG~~Ga~~~~sl~~~~~~~~~i~~aa~~~~pdi 693 (749)
. +++-++ |. ... +-+++..+||||+|++|. ++ |+++..+.++++ . -|=+
T Consensus 145 a~~~~d~~IiARTDa~~~~g~deAI~Ra~aY~eAGAD~ifi~~-~~-----------~~~~i~~~~~~~----~--~Pl~ 206 (292)
T PRK11320 145 ARTDPDFVIMARTDALAVEGLDAAIERAQAYVEAGADMIFPEA-MT-----------ELEMYRRFADAV----K--VPIL 206 (292)
T ss_pred hccCCCeEEEEecCcccccCHHHHHHHHHHHHHcCCCEEEecC-CC-----------CHHHHHHHHHhc----C--CCEE
Confidence 2 344332 21 112 335677899999999983 32 455554444433 1 2311
Q ss_pred EEE-EccC-CCCCHHHHHHH
Q 004491 694 IVL-CHGG-PISSPSEAEFI 711 (749)
Q Consensus 694 i~l-~hGG-Pi~~p~d~~~~ 711 (749)
..+ .+|. |.-++++++.+
T Consensus 207 ~n~~~~~~~p~~s~~~L~~l 226 (292)
T PRK11320 207 ANITEFGATPLFTTEELASA 226 (292)
T ss_pred EEeccCCCCCCCCHHHHHHc
Confidence 123 3343 66677776553
No 17
>PRK00311 panB 3-methyl-2-oxobutanoate hydroxymethyltransferase; Reviewed
Probab=97.65 E-value=0.00029 Score=74.92 Aligned_cols=146 Identities=21% Similarity=0.229 Sum_probs=98.7
Q ss_pred HHHHHHHhhcCCCeEEeccccchhhhhhhhcCCcEEEEeccccccccCCccccccccccCchHHHHHhh----hhhcCCC
Q 004491 482 LSKLKYQIDKGLPIIGAGAGTGISAKFEEAGGVDLIVLYNSGRFRMAGRGSLAGLLPFADANAVVLEMA----NEVLPVV 557 (749)
Q Consensus 482 l~~L~~~i~~~~piig~gaGtGlsAk~ae~gGaDli~~ynsGrfR~~G~~SlagllpygdaN~iv~e~~----~eilp~v 557 (749)
+.+||+..++++||+-..+=-.+|||.+++.|+|.|++ |-+.-+..|-|.|-+.+.+|.- +.|.-.+
T Consensus 4 ~~~lr~~~~~g~~i~~~tayD~~sArl~e~aG~d~i~v---------Gds~~~~~lG~~Dt~~vtl~em~~h~~~V~r~~ 74 (264)
T PRK00311 4 ISDLQKMKQEGEKIVMLTAYDYPFAKLFDEAGVDVILV---------GDSLGMVVLGYDSTLPVTLDDMIYHTKAVARGA 74 (264)
T ss_pred HHHHHHHHhCCCCEEEEeCCCHHHHHHHHHcCCCEEEE---------CHHHHHHHcCCCCCCCcCHHHHHHHHHHHHhcC
Confidence 57788888899999999999999999999999999973 2222223456777666655543 5666666
Q ss_pred CCCceEEeec----cCCCCCCHHHHHHHHHHcCccceecCCcccccchhhhhhhhhcCCchHHHHHHHHHHHHcCCccc-
Q 004491 558 KEVPVLAGVC----GTDPFRRVDYFLKQLESIGFFGVQNFPTVGLFDGNFRQNLEETGMGYGLEVEMIDKAHKMGLLTT- 632 (749)
Q Consensus 558 ~~tPViaGv~----atDP~~~~~~~l~~lk~~Gf~GV~NfPTvgliDG~fR~~LEe~G~gy~~EVemi~~A~~~gl~T~- 632 (749)
+..||++-+- ..+|..-+.+-.+-+++.|..||. |.|. +.=++.|+.+.+.|+--+
T Consensus 75 ~~p~vvaD~pfg~y~~~~~~av~~a~r~~~~aGa~aVk-------iEdg------------~~~~~~I~al~~agIpV~g 135 (264)
T PRK00311 75 PRALVVADMPFGSYQASPEQALRNAGRLMKEAGAHAVK-------LEGG------------EEVAETIKRLVERGIPVMG 135 (264)
T ss_pred CCCcEEEeCCCCCccCCHHHHHHHHHHHHHHhCCeEEE-------EcCc------------HHHHHHHHHHHHCCCCEee
Confidence 6556887661 112222233345556679999985 3331 233578888888885543
Q ss_pred -------------cccc---C-------HHHHHHHHhccCcEEEec
Q 004491 633 -------------PYAF---N-------EGEAVKMAKAGADIIVAH 655 (749)
Q Consensus 633 -------------~yvf---~-------~eqa~~Ma~AGaDiiv~h 655 (749)
.|.. + .++|+++.+||||.|++=
T Consensus 136 HiGL~pq~~~~~gg~~i~grt~~~a~~~i~ra~a~~eAGA~~i~lE 181 (264)
T PRK00311 136 HLGLTPQSVNVLGGYKVQGRDEEAAEKLLEDAKALEEAGAFALVLE 181 (264)
T ss_pred eecccceeecccCCeeeecCCHHHHHHHHHHHHHHHHCCCCEEEEc
Confidence 2321 1 367888899999999874
No 18
>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=97.64 E-value=0.001 Score=70.42 Aligned_cols=217 Identities=21% Similarity=0.206 Sum_probs=118.3
Q ss_pred CCeEEecccc----chhhhhhhhcCCcEEEEeccccccccCCcc--c----cccc-cccCchHHHHHhhhhhcCCC--CC
Q 004491 493 LPIIGAGAGT----GISAKFEEAGGVDLIVLYNSGRFRMAGRGS--L----AGLL-PFADANAVVLEMANEVLPVV--KE 559 (749)
Q Consensus 493 ~piig~gaGt----GlsAk~ae~gGaDli~~ynsGrfR~~G~~S--l----agll-pygdaN~iv~e~~~eilp~v--~~ 559 (749)
.|| +.+||. ....++++.||++++++=.--.--+.|... + .+++ .++-.|.=+.++.+++.+.. .+
T Consensus 11 nP~-~~aag~~~~~~~~~~~~~~g~~g~v~~~ti~~~~~~~~~~p~~~~~~~~~~n~~g~~~~g~~~~~~~~~~~~~~~~ 89 (296)
T cd04740 11 NPV-ILASGTFGFGEELSRVADLGKLGAIVTKSITLEPREGNPPPRVVETPGGMLNAIGLQNPGVEAFLEELLPWLREFG 89 (296)
T ss_pred CCC-EECCCCCCCHHHHHHHHhcCCceEEEECCcCCCCCCCCCCCeEEecCcceeeecCCCCcCHHHHHHHHHHHhhcCC
Confidence 465 444554 244666778889999973211111112111 1 1111 23444433344444444433 36
Q ss_pred CceEEeeccCCCCCCHHHHHHHHHHcCccce-ecC--CcccccchhhhhhhhhcCCchHHHHHHHHHHHHc-CCccc---
Q 004491 560 VPVLAGVCGTDPFRRVDYFLKQLESIGFFGV-QNF--PTVGLFDGNFRQNLEETGMGYGLEVEMIDKAHKM-GLLTT--- 632 (749)
Q Consensus 560 tPViaGv~atDP~~~~~~~l~~lk~~Gf~GV-~Nf--PTvgliDG~fR~~LEe~G~gy~~EVemi~~A~~~-gl~T~--- 632 (749)
.|+++-+++.+| .++....+++++.||.+| .|| |..-.-...+-++. +.=.|.++..++. ++.-+
T Consensus 90 ~p~ivsi~g~~~-~~~~~~a~~~~~~G~d~iElN~~cP~~~~~g~~~~~~~-------~~~~eiv~~vr~~~~~Pv~vKl 161 (296)
T cd04740 90 TPVIASIAGSTV-EEFVEVAEKLADAGADAIELNISCPNVKGGGMAFGTDP-------EAVAEIVKAVKKATDVPVIVKL 161 (296)
T ss_pred CcEEEEEecCCH-HHHHHHHHHHHHcCCCEEEEECCCCCCCCCcccccCCH-------HHHHHHHHHHHhccCCCEEEEe
Confidence 899999999987 577888889999999999 787 54311111121211 2223566666665 43211
Q ss_pred -ccccCH-HHHHHHHhccCcEEEecc---CC-------------CcccccccccccCHHHHHHHHHHHHHHHHHhCCCeE
Q 004491 633 -PYAFNE-GEAVKMAKAGADIIVAHM---GL-------------TTSGSIGAKTALSLDESVDRVQAIADAAHRINPDAI 694 (749)
Q Consensus 633 -~yvf~~-eqa~~Ma~AGaDiiv~h~---Gl-------------T~gG~~Ga~~~~sl~~~~~~~~~i~~aa~~~~pdii 694 (749)
|..-+. +-|+...++|||.|+++= |. ..||..|... ..-+.+.+.++.++. + +
T Consensus 162 ~~~~~~~~~~a~~~~~~G~d~i~~~nt~~g~~~~~~~~~~~~~~~~gg~sg~~~---~~~~~~~i~~i~~~~-----~-i 232 (296)
T cd04740 162 TPNVTDIVEIARAAEEAGADGLTLINTLKGMAIDIETRKPILGNVTGGLSGPAI---KPIALRMVYQVYKAV-----E-I 232 (296)
T ss_pred CCCchhHHHHHHHHHHcCCCEEEEECCCcccccccccCceeecCCcceecCccc---chHHHHHHHHHHHhc-----C-C
Confidence 111112 336667789999887741 11 1133333211 112344444444432 2 3
Q ss_pred EEEccCCCCCHHHHHHHHhhCCCccEEecCccccc
Q 004491 695 VLCHGGPISSPSEAEFILKRTKGVHGFYGASSMER 729 (749)
Q Consensus 695 ~l~hGGPi~~p~d~~~~l~~~~~~~Gf~g~Ss~ER 729 (749)
-++..|-|.+|+|+..+++ .++++.--++.+=+
T Consensus 233 pii~~GGI~~~~da~~~l~--~GAd~V~igra~l~ 265 (296)
T cd04740 233 PIIGVGGIASGEDALEFLM--AGASAVQVGTANFV 265 (296)
T ss_pred CEEEECCCCCHHHHHHHHH--cCCCEEEEchhhhc
Confidence 4555678999999999995 45788777777544
No 19
>cd04722 TIM_phosphate_binding TIM barrel proteins share a structurally conserved phosphate binding motif and in general share an eight beta/alpha closed barrel structure. Specific for this family is the conserved phosphate binding site at the edges of strands 7 and 8. The phosphate comes either from the substrate, as in the case of inosine monophosphate dehydrogenase (IMPDH), or from ribulose-5-phosphate 3-epimerase (RPE) or from cofactors, like FMN.
Probab=97.60 E-value=0.0024 Score=60.89 Aligned_cols=179 Identities=21% Similarity=0.194 Sum_probs=106.4
Q ss_pred hhhhhhhcCCcEEEEecc-ccccccCCccccccccccCchHHHHHhhhhhcCCCCCCceEEeeccCCCCCCHHHHHHHHH
Q 004491 505 SAKFEEAGGVDLIVLYNS-GRFRMAGRGSLAGLLPFADANAVVLEMANEVLPVVKEVPVLAGVCGTDPFRRVDYFLKQLE 583 (749)
Q Consensus 505 sAk~ae~gGaDli~~yns-GrfR~~G~~SlagllpygdaN~iv~e~~~eilp~v~~tPViaGv~atDP~~~~~~~l~~lk 583 (749)
.++...++|+|+|.+-.. ..+|....... +.+. .+...+ +.|+++.+...||.-......+.++
T Consensus 17 ~~~~~~~~G~~~v~~~~~~~~~~~~~~~~~----------~~~~----~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~ 81 (200)
T cd04722 17 LAKAAAEAGADAIIVGTRSSDPEEAETDDK----------EVLK----EVAAET-DLPLGVQLAINDAAAAVDIAAAAAR 81 (200)
T ss_pred HHHHHHcCCCCEEEEeeEEECcccCCCccc----------cHHH----HHHhhc-CCcEEEEEccCCchhhhhHHHHHHH
Confidence 456677899999987542 22222111100 1222 222232 5799999999998766655567999
Q ss_pred HcCccceecCCcccccchhhhhhhhhcCCchHHHHHHHHHHHHc--CCcccccccCHHHHHH--HHhccCcEEEeccCCC
Q 004491 584 SIGFFGVQNFPTVGLFDGNFRQNLEETGMGYGLEVEMIDKAHKM--GLLTTPYAFNEGEAVK--MAKAGADIIVAHMGLT 659 (749)
Q Consensus 584 ~~Gf~GV~NfPTvgliDG~fR~~LEe~G~gy~~EVemi~~A~~~--gl~T~~yvf~~eqa~~--Ma~AGaDiiv~h~GlT 659 (749)
+.||.+|+=-... +.. .+...++++..++. ++.-...+-..++... +.+.|+|.|+.|.+.-
T Consensus 82 ~~g~d~v~l~~~~----~~~----------~~~~~~~~~~i~~~~~~~~v~~~~~~~~~~~~~~~~~~g~d~i~~~~~~~ 147 (200)
T cd04722 82 AAGADGVEIHGAV----GYL----------AREDLELIRELREAVPDVKVVVKLSPTGELAAAAAEEAGVDEVGLGNGGG 147 (200)
T ss_pred HcCCCEEEEeccC----CcH----------HHHHHHHHHHHHHhcCCceEEEEECCCCccchhhHHHcCCCEEEEcCCcC
Confidence 9999998421111 111 35566778877776 7766555544433333 6899999999998755
Q ss_pred cccccccccccCHHHHHHHHHHHHHHHHHhCCCeEEEEccCCCCCHHHHHHHHhhCCCccEEecCc
Q 004491 660 TSGSIGAKTALSLDESVDRVQAIADAAHRINPDAIVLCHGGPISSPSEAEFILKRTKGVHGFYGAS 725 (749)
Q Consensus 660 ~gG~~Ga~~~~sl~~~~~~~~~i~~aa~~~~pdii~l~hGGPi~~p~d~~~~l~~~~~~~Gf~g~S 725 (749)
++....... . ....+. ..+.++++-+++ .|-|.+|+++..+++. +++|+.=+|
T Consensus 148 ~~~~~~~~~--~---~~~~~~-----~~~~~~~~pi~~-~GGi~~~~~~~~~~~~--Gad~v~vgs 200 (200)
T cd04722 148 GGGGRDAVP--I---ADLLLI-----LAKRGSKVPVIA-GGGINDPEDAAEALAL--GADGVIVGS 200 (200)
T ss_pred CCCCccCch--h---HHHHHH-----HHHhcCCCCEEE-ECCCCCHHHHHHHHHh--CCCEEEecC
Confidence 443322211 0 011111 112344544444 6669999999999965 688887554
No 20
>PRK07259 dihydroorotate dehydrogenase 1B; Reviewed
Probab=97.54 E-value=0.0019 Score=68.89 Aligned_cols=215 Identities=22% Similarity=0.255 Sum_probs=116.4
Q ss_pred CCeEEeccc-cc---hhhhhhhhcCCcEEEEeccccccccCCcc------ccccc-cccCchHHHHHhhhhhcCCCC--C
Q 004491 493 LPIIGAGAG-TG---ISAKFEEAGGVDLIVLYNSGRFRMAGRGS------LAGLL-PFADANAVVLEMANEVLPVVK--E 559 (749)
Q Consensus 493 ~piig~gaG-tG---lsAk~ae~gGaDli~~ynsGrfR~~G~~S------lagll-pygdaN~iv~e~~~eilp~v~--~ 559 (749)
.|| +.++| -+ -..+..++.|+.+|++=.-..-...|... -.+++ .++-.|.=.-++.+++.+..+ +
T Consensus 13 nPv-~~aag~~~~~~~~~~~~~~~g~g~v~~kti~~~~~~g~~~pr~~~~~~~~~n~~g~~~~g~~~~~~~~~~~~~~~~ 91 (301)
T PRK07259 13 NPV-MPASGTFGFGGEYARFYDLNGLGAIVTKSTTLEPREGNPTPRIAETPGGMLNAIGLQNPGVDAFIEEELPWLEEFD 91 (301)
T ss_pred CCc-EECCcCCCCCHHHHHHhhhcCCcEEEeCCCCCCCCCCCCCCcEEecCCceeecCCCCCcCHHHHHHHHHHHHhccC
Confidence 455 44444 33 44566678999999974322222223221 12233 234445333334445555433 6
Q ss_pred CceEEeeccCCCCCCHHHHHHHHHHcC-ccce-ecC--CcccccchhhhhhhhhcCCchHHHHHHHHHHHHcCCcccccc
Q 004491 560 VPVLAGVCGTDPFRRVDYFLKQLESIG-FFGV-QNF--PTVGLFDGNFRQNLEETGMGYGLEVEMIDKAHKMGLLTTPYA 635 (749)
Q Consensus 560 tPViaGv~atDP~~~~~~~l~~lk~~G-f~GV-~Nf--PTvgliDG~fR~~LEe~G~gy~~EVemi~~A~~~gl~T~~yv 635 (749)
.||++=|++.|| -++-+..+++++.| |.|| .|+ |-...-.-.+.+.. +.=.|.++..++.- .+|..
T Consensus 92 ~p~i~si~g~~~-~~~~~~a~~~~~aG~~D~iElN~~cP~~~~gg~~~~~~~-------~~~~eiv~~vr~~~--~~pv~ 161 (301)
T PRK07259 92 TPIIANVAGSTE-EEYAEVAEKLSKAPNVDAIELNISCPNVKHGGMAFGTDP-------ELAYEVVKAVKEVV--KVPVI 161 (301)
T ss_pred CcEEEEeccCCH-HHHHHHHHHHhccCCcCEEEEECCCCCCCCCccccccCH-------HHHHHHHHHHHHhc--CCCEE
Confidence 899999999997 57778888999999 9999 555 43210000111211 23345555555541 23322
Q ss_pred c----CHHH----HHHHHhccCcEEEecc---CC-------------CcccccccccccCHHHHHHHHHHHHHHHHHhCC
Q 004491 636 F----NEGE----AVKMAKAGADIIVAHM---GL-------------TTSGSIGAKTALSLDESVDRVQAIADAAHRINP 691 (749)
Q Consensus 636 f----~~eq----a~~Ma~AGaDiiv~h~---Gl-------------T~gG~~Ga~~~~sl~~~~~~~~~i~~aa~~~~p 691 (749)
. +.++ |+.+.++|+|.|+++- |. ..||..|.... .-+.+.+.+|.++ +
T Consensus 162 vKl~~~~~~~~~~a~~l~~~G~d~i~~~nt~~g~~~~~~~~~~~~~~~~gg~sg~~~~---p~~l~~v~~i~~~---~-- 233 (301)
T PRK07259 162 VKLTPNVTDIVEIAKAAEEAGADGLSLINTLKGMAIDIKTRKPILANVTGGLSGPAIK---PIALRMVYQVYQA---V-- 233 (301)
T ss_pred EEcCCCchhHHHHHHHHHHcCCCEEEEEccccccccccccCceeecCCcCccCCcCcc---cccHHHHHHHHHh---C--
Confidence 2 2233 5667789999987741 11 22333332111 1134444455443 2
Q ss_pred CeEEEEccCCCCCHHHHHHHHhhCCCccEEecCccccc
Q 004491 692 DAIVLCHGGPISSPSEAEFILKRTKGVHGFYGASSMER 729 (749)
Q Consensus 692 dii~l~hGGPi~~p~d~~~~l~~~~~~~Gf~g~Ss~ER 729 (749)
++- ++.-|-|.+++|+..++. .+++..-=++.+=+
T Consensus 234 ~ip-vi~~GGI~~~~da~~~l~--aGAd~V~igr~ll~ 268 (301)
T PRK07259 234 DIP-IIGMGGISSAEDAIEFIM--AGASAVQVGTANFY 268 (301)
T ss_pred CCC-EEEECCCCCHHHHHHHHH--cCCCceeEcHHHhc
Confidence 333 344566999999999995 35677666666544
No 21
>TIGR03151 enACPred_II putative enoyl-(acyl-carrier-protein) reductase II. This oxidoreductase of the 2-nitropropane dioxygenase family (pfam03060) is commonly found in apparent operons with genes involved in fatty acid biosynthesis. Furthermore, this genomic context generally includes the fabG 3-oxoacyl-[ACP] reductase and lacks the fabI enoyl-[ACP] reductase.
Probab=97.52 E-value=0.0016 Score=70.46 Aligned_cols=187 Identities=24% Similarity=0.269 Sum_probs=117.8
Q ss_pred HHHHHhhcCCCeEEeccc----cchhhhhhhhcCCcEEEEeccccccccCCccccccccccCchHHHHHhhhhhcCCCCC
Q 004491 484 KLKYQIDKGLPIIGAGAG----TGISAKFEEAGGVDLIVLYNSGRFRMAGRGSLAGLLPFADANAVVLEMANEVLPVVKE 559 (749)
Q Consensus 484 ~L~~~i~~~~piig~gaG----tGlsAk~ae~gGaDli~~ynsGrfR~~G~~SlagllpygdaN~iv~e~~~eilp~v~~ 559 (749)
+|.+.+.-.-||+.++.+ .-|.+..+++||.=+|=. +++ +. +...+.-+++--. .+
T Consensus 3 ~l~~~lgi~~Pii~apM~~~s~~~la~avs~aGglG~l~~---------------~~~---~~-~~l~~~i~~~~~~-t~ 62 (307)
T TIGR03151 3 RLCDLLGIEYPIFQGGMAWVATGSLAAAVSNAGGLGIIGA---------------GNA---PP-DVVRKEIRKVKEL-TD 62 (307)
T ss_pred hhhHHhCCCCCEEcCCCCCCCCHHHHHHHHhCCCcceecc---------------ccC---CH-HHHHHHHHHHHHh-cC
Confidence 456666778999975543 344555566665443321 111 12 3332332332211 13
Q ss_pred CceEEeeccCCCCCCHHHHHHHHHHcCccceecCCcccccchhhhhhhhhcCCchHHHHHHHHHHHHcCCcccccccCHH
Q 004491 560 VPVLAGVCGTDPFRRVDYFLKQLESIGFFGVQNFPTVGLFDGNFRQNLEETGMGYGLEVEMIDKAHKMGLLTTPYAFNEG 639 (749)
Q Consensus 560 tPViaGv~atDP~~~~~~~l~~lk~~Gf~GV~NfPTvgliDG~fR~~LEe~G~gy~~EVemi~~A~~~gl~T~~yvf~~e 639 (749)
.|+ |++-.=+....+..++.+.+.|-.-|. + +.|.-. ++++..|+.|...++.|.+.+
T Consensus 63 ~pf--gvn~~~~~~~~~~~~~~~~~~~v~~v~------~------------~~g~p~--~~i~~lk~~g~~v~~~v~s~~ 120 (307)
T TIGR03151 63 KPF--GVNIMLLSPFVDELVDLVIEEKVPVVT------T------------GAGNPG--KYIPRLKENGVKVIPVVASVA 120 (307)
T ss_pred CCc--EEeeecCCCCHHHHHHHHHhCCCCEEE------E------------cCCCcH--HHHHHHHHcCCEEEEEcCCHH
Confidence 453 655322222457788888887754443 1 111112 488888999999999999999
Q ss_pred HHHHHHhccCcEEEeccCCCcccccccccccCHHHHHHHHHHHHHHHHHhCCCeEEEEccCCCCCHHHHHHHHhhCCCcc
Q 004491 640 EAVKMAKAGADIIVAHMGLTTSGSIGAKTALSLDESVDRVQAIADAAHRINPDAIVLCHGGPISSPSEAEFILKRTKGVH 719 (749)
Q Consensus 640 qa~~Ma~AGaDiiv~h~GlT~gG~~Ga~~~~sl~~~~~~~~~i~~aa~~~~pdii~l~hGGPi~~p~d~~~~l~~~~~~~ 719 (749)
+|++..++|+|+||+|-- ..||..|... ....++++.++. ++-|+.-|| |.+++|+...+. .+++
T Consensus 121 ~a~~a~~~GaD~Ivv~g~-eagGh~g~~~------~~~ll~~v~~~~-----~iPviaaGG-I~~~~~~~~al~--~GA~ 185 (307)
T TIGR03151 121 LAKRMEKAGADAVIAEGM-ESGGHIGELT------TMALVPQVVDAV-----SIPVIAAGG-IADGRGMAAAFA--LGAE 185 (307)
T ss_pred HHHHHHHcCCCEEEEECc-ccCCCCCCCc------HHHHHHHHHHHh-----CCCEEEECC-CCCHHHHHHHHH--cCCC
Confidence 999999999999999854 7777766321 244555665433 345666665 999999999995 5789
Q ss_pred EEecCccc
Q 004491 720 GFYGASSM 727 (749)
Q Consensus 720 Gf~g~Ss~ 727 (749)
|..-++.|
T Consensus 186 gV~iGt~f 193 (307)
T TIGR03151 186 AVQMGTRF 193 (307)
T ss_pred EeecchHH
Confidence 99988854
No 22
>PRK00208 thiG thiazole synthase; Reviewed
Probab=97.49 E-value=0.00046 Score=72.72 Aligned_cols=105 Identities=20% Similarity=0.309 Sum_probs=77.8
Q ss_pred chHHHHHHHHHHHHc---CCcccccccC-HHHHHHHHhccCcEEEeccCCCcccccccccccCHHHHHHHHHHHHHHHHH
Q 004491 613 GYGLEVEMIDKAHKM---GLLTTPYAFN-EGEAVKMAKAGADIIVAHMGLTTSGSIGAKTALSLDESVDRVQAIADAAHR 688 (749)
Q Consensus 613 gy~~EVemi~~A~~~---gl~T~~yvf~-~eqa~~Ma~AGaDiiv~h~GlT~gG~~Ga~~~~sl~~~~~~~~~i~~aa~~ 688 (749)
-+..=++.++.|+++ ||.++||+.+ +++|+++.++|+|+|-+ -|-.||....++=.+. ++.|.+
T Consensus 105 llpd~~~tv~aa~~L~~~Gf~vlpyc~~d~~~ak~l~~~G~~~vmP-----lg~pIGsg~gi~~~~~---i~~i~e---- 172 (250)
T PRK00208 105 LLPDPIETLKAAEILVKEGFVVLPYCTDDPVLAKRLEEAGCAAVMP-----LGAPIGSGLGLLNPYN---LRIIIE---- 172 (250)
T ss_pred CCcCHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHcCCCEeCC-----CCcCCCCCCCCCCHHH---HHHHHH----
Confidence 355667889999999 9999999985 69999999999999933 2556665544432332 344433
Q ss_pred hCCCeEEEEccCCCCCHHHHHHHHhhCCCccEEecCcccccc--hHH
Q 004491 689 INPDAIVLCHGGPISSPSEAEFILKRTKGVHGFYGASSMERL--PVE 733 (749)
Q Consensus 689 ~~pdii~l~hGGPi~~p~d~~~~l~~~~~~~Gf~g~Ss~ERl--P~E 733 (749)
. +++-|+|- |-|.+|+|+...++. ++||..-+|.+=|- |++
T Consensus 173 ~-~~vpVIve-aGI~tpeda~~Amel--GAdgVlV~SAItka~dP~~ 215 (250)
T PRK00208 173 Q-ADVPVIVD-AGIGTPSDAAQAMEL--GADAVLLNTAIAVAGDPVA 215 (250)
T ss_pred h-cCCeEEEe-CCCCCHHHHHHHHHc--CCCEEEEChHhhCCCCHHH
Confidence 2 46666665 559999999999964 88999999999763 544
No 23
>cd04728 ThiG Thiazole synthase (ThiG) is the tetrameric enzyme that is involved in the formation of the thiazole moiety of thiamin pyrophosphate, an essential ubiquitous cofactor that plays an important role in carbohydrate and amino acid metabolism. ThiG catalyzes the formation of thiazole from 1-deoxy-D-xylulose 5-phosphate (DXP) and dehydroglycine, with the help of the sulfur carrier protein ThiS that carries the sulfur needed for thiazole assembly on its carboxy terminus (ThiS-COSH).
Probab=97.45 E-value=0.00055 Score=72.10 Aligned_cols=104 Identities=20% Similarity=0.330 Sum_probs=76.9
Q ss_pred hHHHHHHHHHHHHc---CCcccccccC-HHHHHHHHhccCcEEEeccCCCcccccccccccCHHHHHHHHHHHHHHHHHh
Q 004491 614 YGLEVEMIDKAHKM---GLLTTPYAFN-EGEAVKMAKAGADIIVAHMGLTTSGSIGAKTALSLDESVDRVQAIADAAHRI 689 (749)
Q Consensus 614 y~~EVemi~~A~~~---gl~T~~yvf~-~eqa~~Ma~AGaDiiv~h~GlT~gG~~Ga~~~~sl~~~~~~~~~i~~aa~~~ 689 (749)
+..=++.|+.|+++ ||.++||+.+ ++.|+++.++|+|++-++ |..||....++=.+.+ +.|.+ .
T Consensus 106 lpd~~~tv~aa~~L~~~Gf~vlpyc~dd~~~ar~l~~~G~~~vmPl-----g~pIGsg~Gi~~~~~I---~~I~e----~ 173 (248)
T cd04728 106 LPDPIETLKAAEILVKEGFTVLPYCTDDPVLAKRLEDAGCAAVMPL-----GSPIGSGQGLLNPYNL---RIIIE----R 173 (248)
T ss_pred ccCHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHcCCCEeCCC-----CcCCCCCCCCCCHHHH---HHHHH----h
Confidence 44557889999999 9999999985 699999999999999332 5556655444333333 34432 2
Q ss_pred CCCeEEEEccCCCCCHHHHHHHHhhCCCccEEecCcccccc--hHH
Q 004491 690 NPDAIVLCHGGPISSPSEAEFILKRTKGVHGFYGASSMERL--PVE 733 (749)
Q Consensus 690 ~pdii~l~hGGPi~~p~d~~~~l~~~~~~~Gf~g~Ss~ERl--P~E 733 (749)
+++-|+|-| -|.+|+|+...++ -++||..-+|.+=|- |+.
T Consensus 174 -~~vpVI~eg-GI~tpeda~~Ame--lGAdgVlV~SAIt~a~dP~~ 215 (248)
T cd04728 174 -ADVPVIVDA-GIGTPSDAAQAME--LGADAVLLNTAIAKAKDPVA 215 (248)
T ss_pred -CCCcEEEeC-CCCCHHHHHHHHH--cCCCEEEEChHhcCCCCHHH
Confidence 456666655 5999999999996 478999999999763 544
No 24
>PRK04302 triosephosphate isomerase; Provisional
Probab=97.43 E-value=0.0014 Score=67.16 Aligned_cols=134 Identities=19% Similarity=0.267 Sum_probs=89.4
Q ss_pred HHHHHHHHHcCccceecCCcccccchhhhhhhhhcCCchHHHH-HHHHHHHHcCCcccccccCHHHHHHHHhccCcEEEe
Q 004491 576 DYFLKQLESIGFFGVQNFPTVGLFDGNFRQNLEETGMGYGLEV-EMIDKAHKMGLLTTPYAFNEGEAVKMAKAGADIIVA 654 (749)
Q Consensus 576 ~~~l~~lk~~Gf~GV~NfPTvgliDG~fR~~LEe~G~gy~~EV-emi~~A~~~gl~T~~yvf~~eqa~~Ma~AGaDiiv~ 654 (749)
+.+.+.|++.|..||. +.+-.-|.. ..|+ +.++.|++.||.++.-+-+.+|+++..+.|.|+|..
T Consensus 75 ~~~~~~l~~~G~~~vi------i~~ser~~~--------~~e~~~~v~~a~~~Gl~~I~~v~~~~~~~~~~~~~~~~I~~ 140 (223)
T PRK04302 75 HILPEAVKDAGAVGTL------INHSERRLT--------LADIEAVVERAKKLGLESVVCVNNPETSAAAAALGPDYVAV 140 (223)
T ss_pred hhHHHHHHHcCCCEEE------EeccccccC--------HHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHhcCCCCEEEE
Confidence 3568888888888872 222222222 2234 689999999999998888889999999999999886
Q ss_pred ccCCCcccccccccccCHHHHHHHHHHHHHHHHHhCCCeEEEEccCCCCCHHHHHHHHhhCCCccEEecCcccccch
Q 004491 655 HMGLTTSGSIGAKTALSLDESVDRVQAIADAAHRINPDAIVLCHGGPISSPSEAEFILKRTKGVHGFYGASSMERLP 731 (749)
Q Consensus 655 h~GlT~gG~~Ga~~~~sl~~~~~~~~~i~~aa~~~~pdii~l~hGGPi~~p~d~~~~l~~~~~~~Gf~g~Ss~ERlP 731 (749)
-.-|-.|-..+..+ .+- +.++++.+..++..+++ .+++||-|.+|++++.+++ .++||++-||++=+.+
T Consensus 141 ~p~~~igt~~~~~~-~~~----~~i~~~~~~ir~~~~~~-pvi~GggI~~~e~~~~~~~--~gadGvlVGsa~l~~~ 209 (223)
T PRK04302 141 EPPELIGTGIPVSK-AKP----EVVEDAVEAVKKVNPDV-KVLCGAGISTGEDVKAALE--LGADGVLLASGVVKAK 209 (223)
T ss_pred eCccccccCCCCCc-CCH----HHHHHHHHHHHhccCCC-EEEEECCCCCHHHHHHHHc--CCCCEEEEehHHhCCc
Confidence 54322211112111 112 23455555566554454 5578999999999999973 5789998888765553
No 25
>cd00429 RPE Ribulose-5-phosphate 3-epimerase (RPE). This enzyme catalyses the interconversion of D-ribulose 5-phosphate (Ru5P) into D-xylulose 5-phosphate, as part of the Calvin cycle (reductive pentose phosphate pathway) in chloroplasts and in the oxidative pentose phosphate pathway. In the Calvin cycle Ru5P is phosphorylated by phosphoribulose kinase to ribulose-1,5-bisphosphate, which in turn is used by RubisCO (ribulose-1,5-bisphosphate carboxylase/oxygenase) to incorporate CO2 as the central step in carbohydrate synthesis.
Probab=97.42 E-value=0.013 Score=58.19 Aligned_cols=191 Identities=12% Similarity=0.167 Sum_probs=113.5
Q ss_pred hhhhhhcCCcEEEEeccccccccCCccccccccccCchHHHHHhhhhhcCCCCCCceEEeeccCCCCCCHHHHHHHHHHc
Q 004491 506 AKFEEAGGVDLIVLYNSGRFRMAGRGSLAGLLPFADANAVVLEMANEVLPVVKEVPVLAGVCGTDPFRRVDYFLKQLESI 585 (749)
Q Consensus 506 Ak~ae~gGaDli~~ynsGrfR~~G~~SlagllpygdaN~iv~e~~~eilp~v~~tPViaGv~atDP~~~~~~~l~~lk~~ 585 (749)
++.+.++|+|+|=+ |++. +++....+ +-+++++++...+ +.|+.+.+...|| .+|++.+.+.
T Consensus 18 ~~~~~~~G~~~i~l------~~~d-~~~~~~~~------~~~~~~~~i~~~~-~~~~~v~l~~~d~----~~~~~~~~~~ 79 (211)
T cd00429 18 LKRLEEAGADWIHI------DVMD-GHFVPNLT------FGPPVVKALRKHT-DLPLDVHLMVENP----ERYIEAFAKA 79 (211)
T ss_pred HHHHHHcCCCEEEE------eccc-CCCCCccc------cCHHHHHHHHhhC-CCcEEEEeeeCCH----HHHHHHHHHc
Confidence 45677888888764 3333 22222222 2244556665555 5677778888888 6789999999
Q ss_pred CccceecCCcccccchhhhhhhhhcCCchHHHHHHHHHHHHcCCcccccccC---HHHHHHHHhccCcEEEeccCCCccc
Q 004491 586 GFFGVQNFPTVGLFDGNFRQNLEETGMGYGLEVEMIDKAHKMGLLTTPYAFN---EGEAVKMAKAGADIIVAHMGLTTSG 662 (749)
Q Consensus 586 Gf~GV~NfPTvgliDG~fR~~LEe~G~gy~~EVemi~~A~~~gl~T~~yvf~---~eqa~~Ma~AGaDiiv~h~GlT~gG 662 (749)
|..||+ +.++.. +...+.++.+++.|+.....+-+ ++..++..+. +|.|.. +++..|+
T Consensus 80 g~dgv~------vh~~~~-----------~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~-~d~i~~-~~~~~g~ 140 (211)
T cd00429 80 GADIIT------FHAEAT-----------DHLHRTIQLIKELGMKAGVALNPGTPVEVLEPYLDE-VDLVLV-MSVNPGF 140 (211)
T ss_pred CCCEEE------ECccch-----------hhHHHHHHHHHHCCCeEEEEecCCCCHHHHHHHHhh-CCEEEE-EEECCCC
Confidence 999974 112221 22245588888888876555532 3445555444 898855 3332222
Q ss_pred ccccccccCHHHHHHHHHHHHHHHHHhCCCeEEEEccCCCCCHHHHHHHHhhCCCccEEecCcccccchHHHHHHHHHHh
Q 004491 663 SIGAKTALSLDESVDRVQAIADAAHRINPDAIVLCHGGPISSPSEAEFILKRTKGVHGFYGASSMERLPVEQAITSTMRQ 742 (749)
Q Consensus 663 ~~Ga~~~~sl~~~~~~~~~i~~aa~~~~pdii~l~hGGPi~~p~d~~~~l~~~~~~~Gf~g~Ss~ERlP~E~ai~~~~~~ 742 (749)
-|.+-.. ...+.++++.+...+.++++-+.+-|| |+ |+++..+++ .+++|++-+|++=+.+- ..+++++
T Consensus 141 -tg~~~~~---~~~~~i~~~~~~~~~~~~~~pi~v~GG-I~-~env~~~~~--~gad~iivgsai~~~~~---~~~~~~~ 209 (211)
T cd00429 141 -GGQKFIP---EVLEKIRKLRELIPENNLNLLIEVDGG-IN-LETIPLLAE--AGADVLVAGSALFGSDD---YAEAIKE 209 (211)
T ss_pred -CCcccCH---HHHHHHHHHHHHHHhcCCCeEEEEECC-CC-HHHHHHHHH--cCCCEEEECHHHhCCCC---HHHHHHH
Confidence 1211112 334555666666655577766666565 65 699999884 46899999999644332 3444455
Q ss_pred hc
Q 004491 743 YK 744 (749)
Q Consensus 743 FK 744 (749)
||
T Consensus 210 ~~ 211 (211)
T cd00429 210 LR 211 (211)
T ss_pred hC
Confidence 53
No 26
>TIGR01163 rpe ribulose-phosphate 3-epimerase. This family consists of Ribulose-phosphate 3-epimerase, also known as pentose-5-phosphate 3-epimerase (PPE). PPE converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. It has been found in a wide range of bacteria, archebacteria, fungi and plants.
Probab=97.35 E-value=0.012 Score=58.62 Aligned_cols=192 Identities=12% Similarity=0.189 Sum_probs=114.1
Q ss_pred hhhhhhhcCCcEEEEe-ccccccccCCccccccccccCchHHHHHhhhhhcCCCCCCceEEeeccCCCCCCHHHHHHHHH
Q 004491 505 SAKFEEAGGVDLIVLY-NSGRFRMAGRGSLAGLLPFADANAVVLEMANEVLPVVKEVPVLAGVCGTDPFRRVDYFLKQLE 583 (749)
Q Consensus 505 sAk~ae~gGaDli~~y-nsGrfR~~G~~SlagllpygdaN~iv~e~~~eilp~v~~tPViaGv~atDP~~~~~~~l~~lk 583 (749)
.++.++++|||.|=+= ..|.| . .|.- ..+++.++|-.. .+.|+.+.+...|| .+|++.++
T Consensus 16 ~~~~~~~~g~d~i~~~~~Dg~~--------~-----~~~~-~~~~~v~~i~~~-~~~~v~v~lm~~~~----~~~~~~~~ 76 (210)
T TIGR01163 16 EVKAVEEAGADWIHVDVMDGHF--------V-----PNLT-FGPPVLEALRKY-TDLPIDVHLMVENP----DRYIEDFA 76 (210)
T ss_pred HHHHHHHcCCCEEEEcCCCCCC--------C-----CCcc-cCHHHHHHHHhc-CCCcEEEEeeeCCH----HHHHHHHH
Confidence 3567778888887541 22222 1 1211 345566666654 34788888888875 68999999
Q ss_pred HcCccceecCCcccccchhhhhhhhhcCCchHHHHHHHHHHHHcCCccccc--ccCHHHHHHHHhccCcEEEeccCCCcc
Q 004491 584 SIGFFGVQNFPTVGLFDGNFRQNLEETGMGYGLEVEMIDKAHKMGLLTTPY--AFNEGEAVKMAKAGADIIVAHMGLTTS 661 (749)
Q Consensus 584 ~~Gf~GV~NfPTvgliDG~fR~~LEe~G~gy~~EVemi~~A~~~gl~T~~y--vf~~eqa~~Ma~AGaDiiv~h~GlT~g 661 (749)
+.|..||+= | ++. .+...+.++.+++.|+-.... ..+.+|..+-...++|.+. ++++..|
T Consensus 77 ~~gadgv~v-h-----~~~-----------~~~~~~~~~~~~~~g~~~~~~~~~~t~~e~~~~~~~~~d~i~-~~~~~~g 138 (210)
T TIGR01163 77 EAGADIITV-H-----PEA-----------SEHIHRLLQLIKDLGAKAGIVLNPATPLEFLEYVLPDVDLVL-LMSVNPG 138 (210)
T ss_pred HcCCCEEEE-c-----cCC-----------chhHHHHHHHHHHcCCcEEEEECCCCCHHHHHHHHhhCCEEE-EEEEcCC
Confidence 999999872 1 111 123346667777777653333 2233444333456799854 4444322
Q ss_pred cccccccccCHHHHHHHHHHHHHHHHHhCCCeEEEEccCCCCCHHHHHHHHhhCCCccEEecCcccccchHHHHHHHHHH
Q 004491 662 GSIGAKTALSLDESVDRVQAIADAAHRINPDAIVLCHGGPISSPSEAEFILKRTKGVHGFYGASSMERLPVEQAITSTMR 741 (749)
Q Consensus 662 G~~Ga~~~~sl~~~~~~~~~i~~aa~~~~pdii~l~hGGPi~~p~d~~~~l~~~~~~~Gf~g~Ss~ERlP~E~ai~~~~~ 741 (749)
+ -|.+ -..+..+.++++.+...+.++.+-+++-|| | +|+.+..+++ .+++|++-+|++=.=| -+++.++
T Consensus 139 ~-tg~~---~~~~~~~~i~~i~~~~~~~~~~~~i~v~GG-I-~~env~~l~~--~gad~iivgsai~~~~---d~~~~~~ 207 (210)
T TIGR01163 139 F-GGQK---FIPDTLEKIREVRKMIDENGLSILIEVDGG-V-NDDNARELAE--AGADILVAGSAIFGAD---DYKEVIR 207 (210)
T ss_pred C-Cccc---ccHHHHHHHHHHHHHHHhcCCCceEEEECC-c-CHHHHHHHHH--cCCCEEEEChHHhCCC---CHHHHHH
Confidence 2 2211 123444566777666666677666666565 6 5899999883 5789999999883322 2445555
Q ss_pred hhc
Q 004491 742 QYK 744 (749)
Q Consensus 742 ~FK 744 (749)
+||
T Consensus 208 ~~~ 210 (210)
T TIGR01163 208 SLR 210 (210)
T ss_pred HhC
Confidence 554
No 27
>PRK01130 N-acetylmannosamine-6-phosphate 2-epimerase; Provisional
Probab=97.33 E-value=0.00097 Score=67.89 Aligned_cols=128 Identities=20% Similarity=0.265 Sum_probs=84.7
Q ss_pred HHHHHHHHHcCccceecCCcccccchhhhhhhhhcCCchHHHHHHHHHHHH-cCCcccccccCHHHHHHHHhccCcEEEe
Q 004491 576 DYFLKQLESIGFFGVQNFPTVGLFDGNFRQNLEETGMGYGLEVEMIDKAHK-MGLLTTPYAFNEGEAVKMAKAGADIIVA 654 (749)
Q Consensus 576 ~~~l~~lk~~Gf~GV~NfPTvgliDG~fR~~LEe~G~gy~~EVemi~~A~~-~gl~T~~yvf~~eqa~~Ma~AGaDiiv~ 654 (749)
.++++++++.|-.=|. +|+...... .| +.--++++.+++ .|+..++-+.+.++++++.++|+|+|+.
T Consensus 78 ~~~v~~a~~aGad~I~-------~d~~~~~~p--~~---~~~~~~i~~~~~~~~i~vi~~v~t~ee~~~a~~~G~d~i~~ 145 (221)
T PRK01130 78 LKEVDALAAAGADIIA-------LDATLRPRP--DG---ETLAELVKRIKEYPGQLLMADCSTLEEGLAAQKLGFDFIGT 145 (221)
T ss_pred HHHHHHHHHcCCCEEE-------EeCCCCCCC--CC---CCHHHHHHHHHhCCCCeEEEeCCCHHHHHHHHHcCCCEEEc
Confidence 4678999999876221 222111000 00 122378999999 8999999999999999999999999988
Q ss_pred c-cCCCcccccccccccCHHHHHHHHHHHHHHHHHhCCCeEEEEccCCCCCHHHHHHHHhhCCCccEEecCccccc
Q 004491 655 H-MGLTTSGSIGAKTALSLDESVDRVQAIADAAHRINPDAIVLCHGGPISSPSEAEFILKRTKGVHGFYGASSMER 729 (749)
Q Consensus 655 h-~GlT~gG~~Ga~~~~sl~~~~~~~~~i~~aa~~~~pdii~l~hGGPi~~p~d~~~~l~~~~~~~Gf~g~Ss~ER 729 (749)
+ .|+|.... ... ......++++.+.. ++-+++ +|-|.+|+|++.+++. +++|+.-||++=+
T Consensus 146 ~~~g~t~~~~---~~~---~~~~~~i~~i~~~~-----~iPvia-~GGI~t~~~~~~~l~~--GadgV~iGsai~~ 207 (221)
T PRK01130 146 TLSGYTEETK---KPE---EPDFALLKELLKAV-----GCPVIA-EGRINTPEQAKKALEL--GAHAVVVGGAITR 207 (221)
T ss_pred CCceeecCCC---CCC---CcCHHHHHHHHHhC-----CCCEEE-ECCCCCHHHHHHHHHC--CCCEEEEchHhcC
Confidence 4 45553221 111 11133445554433 233444 7779999999999964 5899999999866
No 28
>cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of
Probab=97.29 E-value=0.0074 Score=63.63 Aligned_cols=207 Identities=22% Similarity=0.229 Sum_probs=117.7
Q ss_pred hhhhhhhhcCCcEEEEeccccccccCCcc----------------ccccccccCchHHHHHhhhhhcCCCC---CCceEE
Q 004491 504 ISAKFEEAGGVDLIVLYNSGRFRMAGRGS----------------LAGLLPFADANAVVLEMANEVLPVVK---EVPVLA 564 (749)
Q Consensus 504 lsAk~ae~gGaDli~~ynsGrfR~~G~~S----------------lagllpygdaN~iv~e~~~eilp~v~---~tPVia 564 (749)
-..+.....|+.++++-.....-..|..+ .+-+-.+|-.|.-.-++.+++.+..+ +.||++
T Consensus 24 ~~~~~~~~~g~g~vv~kti~~~~~~~n~~pr~~~~~~~~~~~~~~~~~~n~~g~~~~g~~~~~~~i~~~~~~~~~~pvi~ 103 (289)
T cd02810 24 ELIARAAAAGFGAVVYKTVTLHPRPGNPLPRVARLPPEGESYPEQLGILNSFGLPNLGLDVWLQDIAKAKKEFPGQPLIA 103 (289)
T ss_pred HHHHHHHHcCCCeEEeCcccCCCCCCCCCCCEEEeccccccCcccceEeecCCCCCcCHHHHHHHHHHHHhccCCCeEEE
Confidence 33555678899999987665543334332 11112234555555555566666554 689999
Q ss_pred eeccCCCCCCHHHHHHHHHHcCcccee-cC--CcccccchhhhhhhhhcCCchHHH--HHHHHHHHHc-CCc---ccccc
Q 004491 565 GVCGTDPFRRVDYFLKQLESIGFFGVQ-NF--PTVGLFDGNFRQNLEETGMGYGLE--VEMIDKAHKM-GLL---TTPYA 635 (749)
Q Consensus 565 Gv~atDP~~~~~~~l~~lk~~Gf~GV~-Nf--PTvgliDG~fR~~LEe~G~gy~~E--Vemi~~A~~~-gl~---T~~yv 635 (749)
-++++|| .++.+..+.+.+.|+.+|. |+ |.... + |. +..+.+ .|+++..++. ++. =++-.
T Consensus 104 si~g~~~-~~~~~~a~~~~~~G~d~ielN~~cP~~~~--~--~~------~~~~~~~~~eiv~~vr~~~~~pv~vKl~~~ 172 (289)
T cd02810 104 SVGGSSK-EDYVELARKIERAGAKALELNLSCPNVGG--G--RQ------LGQDPEAVANLLKAVKAAVDIPLLVKLSPY 172 (289)
T ss_pred EeccCCH-HHHHHHHHHHHHhCCCEEEEEcCCCCCCC--C--cc------cccCHHHHHHHHHHHHHccCCCEEEEeCCC
Confidence 9999988 4777889999999999984 55 65322 1 11 222222 2445555543 311 12223
Q ss_pred cC----HHHHHHHHhccCcEEEeccCCCccccc-------ccc---cccCH----HHHHHHHHHHHHHHHHhCCCeEEEE
Q 004491 636 FN----EGEAVKMAKAGADIIVAHMGLTTSGSI-------GAK---TALSL----DESVDRVQAIADAAHRINPDAIVLC 697 (749)
Q Consensus 636 f~----~eqa~~Ma~AGaDiiv~h~GlT~gG~~-------Ga~---~~~sl----~~~~~~~~~i~~aa~~~~pdii~l~ 697 (749)
++ .+.++.+.++|||.|++|-++.. ... +.+ ...|- .-+.+.+.+|.+ .+.+++ -++
T Consensus 173 ~~~~~~~~~a~~l~~~Gad~i~~~~~~~~-~~~~~~~~~~~~~~~~~g~sg~~~~~~~~~~v~~i~~---~~~~~i-pii 247 (289)
T cd02810 173 FDLEDIVELAKAAERAGADGLTAINTISG-RVVDLKTVGPGPKRGTGGLSGAPIRPLALRWVARLAA---RLQLDI-PII 247 (289)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEEcccCc-cceecccCccccCCCCCccCcHHHHHHHHHHHHHHHH---hcCCCC-CEE
Confidence 45 45566677899999999965421 110 000 01111 112333333333 333344 445
Q ss_pred ccCCCCCHHHHHHHHhhCCCccEEecCcccc
Q 004491 698 HGGPISSPSEAEFILKRTKGVHGFYGASSME 728 (749)
Q Consensus 698 hGGPi~~p~d~~~~l~~~~~~~Gf~g~Ss~E 728 (749)
-.|-|.+++|+..++. .++++..-++.+=
T Consensus 248 a~GGI~~~~da~~~l~--~GAd~V~vg~a~~ 276 (289)
T cd02810 248 GVGGIDSGEDVLEMLM--AGASAVQVATALM 276 (289)
T ss_pred EECCCCCHHHHHHHHH--cCccHheEcHHHH
Confidence 5667999999999995 4577776666543
No 29
>TIGR02319 CPEP_Pphonmut carboxyvinyl-carboxyphosphonate phosphorylmutase. This family consists of carboxyvinyl-carboxyphosphonate phosphorylmutase (CPEP phosphonomutase), an unusual enzyme involved in the biosynthesis of the antibiotic bialaphos. So far, it is known only in that pathway and only in Streptomyces hygroscopicus. Some related proteins annotated as being functionally equivalent are likely misannotated examples of methylisocitrate lyase, an enzyme of priopionate utilization.
Probab=97.26 E-value=0.0099 Score=64.35 Aligned_cols=159 Identities=21% Similarity=0.285 Sum_probs=97.0
Q ss_pred HHHHHHhhcCCCeEEeccccchhhhhhhhcCCcEEEEecccccc-ccCCccccccccccCchHHHHHhhhhhcCCCCCCc
Q 004491 483 SKLKYQIDKGLPIIGAGAGTGISAKFEEAGGVDLIVLYNSGRFR-MAGRGSLAGLLPFADANAVVLEMANEVLPVVKEVP 561 (749)
Q Consensus 483 ~~L~~~i~~~~piig~gaGtGlsAk~ae~gGaDli~~ynsGrfR-~~G~~SlagllpygdaN~iv~e~~~eilp~v~~tP 561 (749)
.+||+..++++|++-.++--++|||.+|+.|.+-|.+=.|+--- +-|.+-+ +++++..-. +.++.|.-.+ ++|
T Consensus 6 ~~~r~l~~~~~~l~~p~v~Da~SArl~e~aGf~ai~~sg~~~~as~lG~pD~-g~l~~~e~~----~~~~~I~~~~-~lP 79 (294)
T TIGR02319 6 RTFRELMNAPEILVVPSAYDALSAKVIQQAGFPAVHMTGSGTSASMLGLPDL-GFTSVSEQA----INAKNIVLAV-DVP 79 (294)
T ss_pred HHHHHHhcCCCcEEeecCcCHHHHHHHHHcCCCEEEecHHHHHHHHcCCCCc-CCCCHHHHH----HHHHHHHhcc-CCC
Confidence 46888889999999999999999999999999988643333321 2343333 355554333 3335566665 589
Q ss_pred eEEeeccC--CCCCCHHHHHHHHHHcCccceec----CCc-ccccchhhhhhhhhcCCchHHHHHHHHHHHH---c-CCc
Q 004491 562 VLAGVCGT--DPFRRVDYFLKQLESIGFFGVQN----FPT-VGLFDGNFRQNLEETGMGYGLEVEMIDKAHK---M-GLL 630 (749)
Q Consensus 562 ViaGv~at--DP~~~~~~~l~~lk~~Gf~GV~N----fPT-vgliDG~fR~~LEe~G~gy~~EVemi~~A~~---~-gl~ 630 (749)
|++=+-.. +|.- +.+..+++.+.|.+||+= ||- -|..+|+ .| +..+.=++-|+.|++ - +++
T Consensus 80 v~aD~dtGyG~~~~-v~r~V~~~~~aGaagi~IEDq~~pK~cg~~~~k---~l----v~~ee~~~kI~Aa~~A~~~~d~~ 151 (294)
T TIGR02319 80 VIMDADAGYGNAMS-VWRATREFERVGIVGYHLEDQVNPKRCGHLEGK---RL----ISTEEMTGKIEAAVEAREDEDFT 151 (294)
T ss_pred EEEECCCCCCCcHH-HHHHHHHHHHcCCeEEEEECCCCccccCCCCCc---cc----cCHHHHHHHHHHHHHhccCCCeE
Confidence 99864322 3333 788899999999999962 341 2222331 11 111222344444443 2 343
Q ss_pred cccc-----ccCHHH----HHHHHhccCcEEEec
Q 004491 631 TTPY-----AFNEGE----AVKMAKAGADIIVAH 655 (749)
Q Consensus 631 T~~y-----vf~~eq----a~~Ma~AGaDiiv~h 655 (749)
-++= ....+| +++..+||||+|.+|
T Consensus 152 I~ARTDa~~~~g~deaI~Ra~aY~eAGAD~ifi~ 185 (294)
T TIGR02319 152 IIARTDARESFGLDEAIRRSREYVAAGADCIFLE 185 (294)
T ss_pred EEEEecccccCCHHHHHHHHHHHHHhCCCEEEec
Confidence 3221 112333 467789999999998
No 30
>TIGR00262 trpA tryptophan synthase, alpha subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.
Probab=97.22 E-value=0.007 Score=63.94 Aligned_cols=153 Identities=18% Similarity=0.267 Sum_probs=98.3
Q ss_pred HHHHhhhhhcCCCCCCceEEeeccCCCCC--CHHHHHHHHHHcCccceecCCcccccchhhhhhhhhcCCchHHHHHHHH
Q 004491 545 VVLEMANEVLPVVKEVPVLAGVCGTDPFR--RVDYFLKQLESIGFFGVQNFPTVGLFDGNFRQNLEETGMGYGLEVEMID 622 (749)
Q Consensus 545 iv~e~~~eilp~v~~tPViaGv~atDP~~--~~~~~l~~lk~~Gf~GV~NfPTvgliDG~fR~~LEe~G~gy~~EVemi~ 622 (749)
-++++.++|-..-.++|++ -+.-.+|.. -+++|++++++.|+.||. +| | +-++.--++++
T Consensus 73 ~~~~~v~~ir~~~~~~plv-~m~Y~Npi~~~G~e~f~~~~~~aGvdgvi-ip-----D-----------lp~ee~~~~~~ 134 (256)
T TIGR00262 73 KCFELLKKVRQKHPNIPIG-LLTYYNLIFRKGVEEFYAKCKEVGVDGVL-VA-----D-----------LPLEESGDLVE 134 (256)
T ss_pred HHHHHHHHHHhcCCCCCEE-EEEeccHHhhhhHHHHHHHHHHcCCCEEE-EC-----C-----------CChHHHHHHHH
Confidence 3455566665442368977 788888954 478999999999999976 33 1 12343457899
Q ss_pred HHHHcCCcccccc---cCHHHHHHHHhccC--cEEEeccCCCcccccccccccCHHHHHHHHHHHHHHHHHhCCCeEEEE
Q 004491 623 KAHKMGLLTTPYA---FNEGEAVKMAKAGA--DIIVAHMGLTTSGSIGAKTALSLDESVDRVQAIADAAHRINPDAIVLC 697 (749)
Q Consensus 623 ~A~~~gl~T~~yv---f~~eqa~~Ma~AGa--Diiv~h~GlT~gG~~Ga~~~~sl~~~~~~~~~i~~aa~~~~pdii~l~ 697 (749)
.+++.|+-.+.++ .+.+..+..++..- ..++... |..|.++... .+..++++++.+... .| +++
T Consensus 135 ~~~~~gl~~i~lv~P~T~~eri~~i~~~~~gfiy~vs~~-----G~TG~~~~~~-~~~~~~i~~lr~~~~--~p---i~v 203 (256)
T TIGR00262 135 AAKKHGVKPIFLVAPNADDERLKQIAEKSQGFVYLVSRA-----GVTGARNRAA-SALNELVKRLKAYSA--KP---VLV 203 (256)
T ss_pred HHHHCCCcEEEEECCCCCHHHHHHHHHhCCCCEEEEECC-----CCCCCcccCC-hhHHHHHHHHHhhcC--CC---EEE
Confidence 9999997765444 44566666666543 2333333 5555543332 334445555544321 12 333
Q ss_pred ccCCCCCHHHHHHHHhhCCCccEEecCccccc
Q 004491 698 HGGPISSPSEAEFILKRTKGVHGFYGASSMER 729 (749)
Q Consensus 698 hGGPi~~p~d~~~~l~~~~~~~Gf~g~Ss~ER 729 (749)
||-|++|++++.+.+. ++||++-||++=|
T Consensus 204 -gfGI~~~e~~~~~~~~--GADgvVvGSaiv~ 232 (256)
T TIGR00262 204 -GFGISKPEQVKQAIDA--GADGVIVGSAIVK 232 (256)
T ss_pred -eCCCCCHHHHHHHHHc--CCCEEEECHHHHH
Confidence 8889999999998854 6799999999843
No 31
>PRK05286 dihydroorotate dehydrogenase 2; Reviewed
Probab=97.17 E-value=0.026 Score=61.91 Aligned_cols=217 Identities=17% Similarity=0.137 Sum_probs=117.4
Q ss_pred CCCeEEeccccch---hhhhhhhcCCcEEEEeccccccccCCcc---------ccccccccCchHHHHHhhhhhcCCCCC
Q 004491 492 GLPIIGAGAGTGI---SAKFEEAGGVDLIVLYNSGRFRMAGRGS---------LAGLLPFADANAVVLEMANEVLPVVKE 559 (749)
Q Consensus 492 ~~piig~gaGtGl---sAk~ae~gGaDli~~ynsGrfR~~G~~S---------lagllpygdaN~iv~e~~~eilp~v~~ 559 (749)
..|| |.++|.-- ..+.....|+.+|++-.-...=..|... .+-+-.+|-.|.=+-.+.+++.+...+
T Consensus 59 ~nPi-~~AsG~~~~~~~~~~~~~~G~Gavv~ktvt~~p~~gn~~pr~~~~~~~~~~~N~~gl~n~g~~~~~~~l~~~~~~ 137 (344)
T PRK05286 59 PNPV-GLAAGFDKNGEAIDALGALGFGFVEVGTVTPRPQPGNPKPRLFRLPEDEALINRMGFNNDGADALAERLKKAYRG 137 (344)
T ss_pred CCCC-EECCCCCCChHHHHHHHHcCCCEEEeCCcCCCCCCCCCCCCEEecccccccccCCCCCCHhHHHHHHHHHHhcCC
Confidence 3466 44555432 2344567899999886554432233321 111223455565455455555443257
Q ss_pred CceEEeeccCC---CCCCHHHHHHHHHHcC--cccee-cC--Ccc-cccchhhhhhhhhcCCchHHHHHHHHHHHHc---
Q 004491 560 VPVLAGVCGTD---PFRRVDYFLKQLESIG--FFGVQ-NF--PTV-GLFDGNFRQNLEETGMGYGLEVEMIDKAHKM--- 627 (749)
Q Consensus 560 tPViaGv~atD---P~~~~~~~l~~lk~~G--f~GV~-Nf--PTv-gliDG~fR~~LEe~G~gy~~EVemi~~A~~~--- 627 (749)
+||++-|++++ +--..++|.+.+++.+ +.++- || |.+ +.-+++..+.++ .=++.+|.+...
T Consensus 138 ~pvivsI~~~~~~~~~~~~~d~~~~~~~~~~~ad~lelN~scP~~~g~~~~~~~~~~~-------eiv~aVr~~~~~~~~ 210 (344)
T PRK05286 138 IPLGINIGKNKDTPLEDAVDDYLICLEKLYPYADYFTVNISSPNTPGLRDLQYGEALD-------ELLAALKEAQAELHG 210 (344)
T ss_pred CcEEEEEecCCCCCcccCHHHHHHHHHHHHhhCCEEEEEccCCCCCCcccccCHHHHH-------HHHHHHHHHHhcccc
Confidence 99999999864 3457888888888887 76654 66 655 333333333433 113444444431
Q ss_pred CCc-c---cccccCH----HHHHHHHhccCcEEEeccCCC-------------cccccccccccCHHHHHHHHHHHHHHH
Q 004491 628 GLL-T---TPYAFNE----GEAVKMAKAGADIIVAHMGLT-------------TSGSIGAKTALSLDESVDRVQAIADAA 686 (749)
Q Consensus 628 gl~-T---~~yvf~~----eqa~~Ma~AGaDiiv~h~GlT-------------~gG~~Ga~~~~sl~~~~~~~~~i~~aa 686 (749)
++. + .|+ ++. +=|+++.++|||-|++|-++. .||.-|.. ...-+.+.+.++ .
T Consensus 211 ~~PV~vKlsp~-~~~~~~~~ia~~l~~~Gadgi~~~nt~~~~~~~~~~~~~~~~gg~SG~~---~~~~~l~~v~~l---~ 283 (344)
T PRK05286 211 YVPLLVKIAPD-LSDEELDDIADLALEHGIDGVIATNTTLSRDGLKGLPNADEAGGLSGRP---LFERSTEVIRRL---Y 283 (344)
T ss_pred CCceEEEeCCC-CCHHHHHHHHHHHHHhCCcEEEEeCCccccccccccccCCCCCCcccHH---HHHHHHHHHHHH---H
Confidence 121 0 123 332 334556688999999997652 12222210 111233333444 3
Q ss_pred HHhCCCeEEEEccCCCCCHHHHHHHHhhCCCccEEecCcc
Q 004491 687 HRINPDAIVLCHGGPISSPSEAEFILKRTKGVHGFYGASS 726 (749)
Q Consensus 687 ~~~~pdii~l~hGGPi~~p~d~~~~l~~~~~~~Gf~g~Ss 726 (749)
+++++++-++ .-|-|.+++|+..++. .+++..--+|.
T Consensus 284 ~~~~~~ipIi-g~GGI~s~eda~e~l~--aGAd~V~v~~~ 320 (344)
T PRK05286 284 KELGGRLPII-GVGGIDSAEDAYEKIR--AGASLVQIYSG 320 (344)
T ss_pred HHhCCCCCEE-EECCCCCHHHHHHHHH--cCCCHHHHHHH
Confidence 3444454444 4455999999999995 45665544444
No 32
>cd02809 alpha_hydroxyacid_oxid_FMN Family of homologous FMN-dependent alpha-hydroxyacid oxidizing enzymes. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO). In green plants, glycolate oxidase is one of the key enzymes in photorespiration where it oxidizes glycolate to glyoxylate. LMO catalyzes the oxidation of L-lactate to acetate and carbon dioxide. MDH oxidizes (S)-mandelate to phenylglyoxalate. It is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate.
Probab=97.15 E-value=0.0079 Score=64.47 Aligned_cols=179 Identities=20% Similarity=0.206 Sum_probs=111.9
Q ss_pred CCeEEecc-ccc--------hhhhhhhhcCCcEEEEeccccccccCCccccccccccCchHHHHHhhhhhcCCCCCCceE
Q 004491 493 LPIIGAGA-GTG--------ISAKFEEAGGVDLIVLYNSGRFRMAGRGSLAGLLPFADANAVVLEMANEVLPVVKEVPVL 563 (749)
Q Consensus 493 ~piig~ga-GtG--------lsAk~ae~gGaDli~~ynsGrfR~~G~~SlagllpygdaN~iv~e~~~eilp~v~~tPVi 563 (749)
-||+-++. |++ -.|+.+++.|+.+.+--.+. .+ .|.-++.-| .|++
T Consensus 65 ~Pi~iapm~g~~~~~~~~~~~la~aa~~~g~~~~~~~~~~-----------------~~----~~~i~~~~~----~~~~ 119 (299)
T cd02809 65 MPFGIAPTGLQGLAHPDGELATARAAAAAGIPFTLSTVST-----------------TS----LEEVAAAAP----GPRW 119 (299)
T ss_pred CCeeeCcccccccCCchHHHHHHHHHHHcCCCEEecCCCc-----------------CC----HHHHHHhcC----CCeE
Confidence 46665554 233 46888999999887754331 01 222223233 5888
Q ss_pred EeeccC-CCCCCHHHHHHHHHHcCcccee---cCCcccccchhhhhhhhhcCCchHHHHHHHHHHHHc-C-CcccccccC
Q 004491 564 AGVCGT-DPFRRVDYFLKQLESIGFFGVQ---NFPTVGLFDGNFRQNLEETGMGYGLEVEMIDKAHKM-G-LLTTPYAFN 637 (749)
Q Consensus 564 aGv~at-DP~~~~~~~l~~lk~~Gf~GV~---NfPTvgliDG~fR~~LEe~G~gy~~EVemi~~A~~~-g-l~T~~yvf~ 637 (749)
+=+... ||. .+.+.++++++.|+..|. |-|..+-. ...+.|+.-++. + -+.+--|.+
T Consensus 120 ~ql~~~~~~~-~~~~~i~~~~~~g~~~i~l~~~~p~~~~~----------------~~~~~i~~l~~~~~~pvivK~v~s 182 (299)
T cd02809 120 FQLYVPRDRE-ITEDLLRRAEAAGYKALVLTVDTPVLGRR----------------LTWDDLAWLRSQWKGPLILKGILT 182 (299)
T ss_pred EEEeecCCHH-HHHHHHHHHHHcCCCEEEEecCCCCCCCC----------------CCHHHHHHHHHhcCCCEEEeecCC
Confidence 887765 774 456678999999999876 66753311 122456665553 3 334445688
Q ss_pred HHHHHHHHhccCcEEEeccCCCcccccccccccCHHHHHHHHHHHHHHHHHhCCCeEEEEccCCCCCHHHHHHHHhhCCC
Q 004491 638 EGEAVKMAKAGADIIVAHMGLTTSGSIGAKTALSLDESVDRVQAIADAAHRINPDAIVLCHGGPISSPSEAEFILKRTKG 717 (749)
Q Consensus 638 ~eqa~~Ma~AGaDiiv~h~GlT~gG~~Ga~~~~sl~~~~~~~~~i~~aa~~~~pdii~l~hGGPi~~p~d~~~~l~~~~~ 717 (749)
+++|++..++|||.|++|- .||.-.. ...+- .+.+.+..+.+++++-++..|| |.++.|+...+. .+
T Consensus 183 ~~~a~~a~~~G~d~I~v~~---~gG~~~~-~g~~~------~~~l~~i~~~~~~~ipvia~GG-I~~~~d~~kal~--lG 249 (299)
T cd02809 183 PEDALRAVDAGADGIVVSN---HGGRQLD-GAPAT------IDALPEIVAAVGGRIEVLLDGG-IRRGTDVLKALA--LG 249 (299)
T ss_pred HHHHHHHHHCCCCEEEEcC---CCCCCCC-CCcCH------HHHHHHHHHHhcCCCeEEEeCC-CCCHHHHHHHHH--cC
Confidence 9999999999999999973 2343211 11111 2233333444555777777776 999999999994 56
Q ss_pred ccEEecCcc
Q 004491 718 VHGFYGASS 726 (749)
Q Consensus 718 ~~Gf~g~Ss 726 (749)
++|-.=++.
T Consensus 250 Ad~V~ig~~ 258 (299)
T cd02809 250 ADAVLIGRP 258 (299)
T ss_pred CCEEEEcHH
Confidence 787766653
No 33
>cd06557 KPHMT-like Ketopantoate hydroxymethyltransferase (KPHMT) is the first enzyme in the pantothenate biosynthesis pathway. Ketopantoate hydroxymethyltransferase (KPHMT) catalyzes the first committed step in the biosynthesis of pantothenate (vitamin B5), which is a precursor to coenzyme A and is required for penicillin biosynthesis.
Probab=97.13 E-value=0.0044 Score=65.72 Aligned_cols=143 Identities=21% Similarity=0.243 Sum_probs=98.1
Q ss_pred HHHHHHhhcCCCeEEeccccchhhhhhhhcCCcEEEEeccccccccCCccccccccccCchHHHHHhh----hhhcCCCC
Q 004491 483 SKLKYQIDKGLPIIGAGAGTGISAKFEEAGGVDLIVLYNSGRFRMAGRGSLAGLLPFADANAVVLEMA----NEVLPVVK 558 (749)
Q Consensus 483 ~~L~~~i~~~~piig~gaGtGlsAk~ae~gGaDli~~ynsGrfR~~G~~SlagllpygdaN~iv~e~~----~eilp~v~ 558 (749)
..||+..++++||+-..+=..+||+.+++.|.|.|++ |-+.-+..+-|.|-+.+.+|.- +.|.-.++
T Consensus 2 ~~lr~l~~~~~~l~~~~ayD~~sA~l~e~aG~d~i~v---------Gds~~~~~lG~pDt~~vtl~em~~~~~~V~r~~~ 72 (254)
T cd06557 2 PDLQKMKKAGEKIVMLTAYDYPTAKLADEAGVDVILV---------GDSLGMVVLGYDSTLPVTLDEMIYHTRAVRRGAP 72 (254)
T ss_pred hhHHHHHhCCCcEEEEeCCCHHHHHHHHHcCCCEEEE---------CHHHHHHHcCCCCCCCcCHHHHHHHHHHHHhcCC
Confidence 4688888889999999999999999999999999973 3222334456767665555543 45565554
Q ss_pred CCc-eEEeeccCCCCCC-----HHHHHHHHHHcCccceecCCcccccchhhhhhhhhcCCchHHHHHHHHHHHHcCCccc
Q 004491 559 EVP-VLAGVCGTDPFRR-----VDYFLKQLESIGFFGVQNFPTVGLFDGNFRQNLEETGMGYGLEVEMIDKAHKMGLLTT 632 (749)
Q Consensus 559 ~tP-ViaGv~atDP~~~-----~~~~l~~lk~~Gf~GV~NfPTvgliDG~fR~~LEe~G~gy~~EVemi~~A~~~gl~T~ 632 (749)
.| |++-+ ...-|.+ +.+-.+-+++.|..||. |.|. +.-++.|+.+.+.|+-.+
T Consensus 73 -~p~viaD~-~fg~y~~~~~~av~~a~r~~~~aGa~aVk-------iEd~------------~~~~~~I~al~~agipV~ 131 (254)
T cd06557 73 -RALVVADM-PFGSYQTSPEQALRNAARLMKEAGADAVK-------LEGG------------AEVAETIRALVDAGIPVM 131 (254)
T ss_pred -CCeEEEeC-CCCcccCCHHHHHHHHHHHHHHhCCeEEE-------EcCc------------HHHHHHHHHHHHcCCCee
Confidence 57 77655 1111333 55556677779999986 3332 255788999999885322
Q ss_pred --------------ccc---cCH-------HHHHHHHhccCcEEEec
Q 004491 633 --------------PYA---FNE-------GEAVKMAKAGADIIVAH 655 (749)
Q Consensus 633 --------------~yv---f~~-------eqa~~Ma~AGaDiiv~h 655 (749)
.|. .+. ++|+++.+||||.|++=
T Consensus 132 gHiGL~pq~~~~~gg~~~~grt~~~a~~~i~ra~a~~~AGA~~i~lE 178 (254)
T cd06557 132 GHIGLTPQSVNQLGGYKVQGKTEEEAERLLEDALALEEAGAFALVLE 178 (254)
T ss_pred ccccccceeeeccCCceeccCCHHHHHHHHHHHHHHHHCCCCEEEEc
Confidence 121 133 67888999999999984
No 34
>cd04726 KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxylase (KGPDC) and D-arabino-3-hexulose-6-phosphate synthase (HPS). KGPDC catalyzes the formation of L-xylulose 5-phosphate and carbon dioxide from 3-keto-L-gulonate 6-phosphate as part of the anaerobic pathway for L-ascorbate utilization in some eubacteria. HPS catalyzes the formation of D-arabino-3-hexulose-6-phosphate from D-ribulose 5-phosphate and formaldehyde in microorganisms that can use formaldehyde as a carbon source. Both catalyze reactions that involve the Mg2+-assisted formation and stabilization of 1,2-enediolate reaction intermediates.
Probab=97.12 E-value=0.0061 Score=60.58 Aligned_cols=135 Identities=17% Similarity=0.133 Sum_probs=96.3
Q ss_pred CCCceEEeeccCCCCCCHHHHHHHHHHcCccceecCCcccccchhhhhhhhhcCCchHHHHHHHHHHHHcCCccc---cc
Q 004491 558 KEVPVLAGVCGTDPFRRVDYFLKQLESIGFFGVQNFPTVGLFDGNFRQNLEETGMGYGLEVEMIDKAHKMGLLTT---PY 634 (749)
Q Consensus 558 ~~tPViaGv~atDP~~~~~~~l~~lk~~Gf~GV~NfPTvgliDG~fR~~LEe~G~gy~~EVemi~~A~~~gl~T~---~y 634 (749)
.+.|+++..--.||.+ .|++++.+.|..+|. +|... +.+.=-++++.+++.|+... +=
T Consensus 52 ~~~~i~~~~~v~~~~~---~~~~~~~~aGad~i~-~h~~~---------------~~~~~~~~i~~~~~~g~~~~v~~~~ 112 (202)
T cd04726 52 PDKIIVADLKTADAGA---LEAEMAFKAGADIVT-VLGAA---------------PLSTIKKAVKAAKKYGKEVQVDLIG 112 (202)
T ss_pred CCCEEEEEEEeccccH---HHHHHHHhcCCCEEE-EEeeC---------------CHHHHHHHHHHHHHcCCeEEEEEeC
Confidence 4789999988888863 578999999988765 33211 01111347888999998776 56
Q ss_pred ccCHHHHHHHHhccCcEEEeccCCCcccccccccccCHHHHHHHHHHHHHHHHHhCCCeEEEEccCCCCCHHHHHHHHhh
Q 004491 635 AFNEGEAVKMAKAGADIIVAHMGLTTSGSIGAKTALSLDESVDRVQAIADAAHRINPDAIVLCHGGPISSPSEAEFILKR 714 (749)
Q Consensus 635 vf~~eqa~~Ma~AGaDiiv~h~GlT~gG~~Ga~~~~sl~~~~~~~~~i~~aa~~~~pdii~l~hGGPi~~p~d~~~~l~~ 714 (749)
+.|++|+.+..+.|+|.++.|++.+ ++..|. ....+.++++.+. +++.+++-|| | +|+++..+++.
T Consensus 113 ~~t~~e~~~~~~~~~d~v~~~~~~~-~~~~~~------~~~~~~i~~~~~~-----~~~~i~~~GG-I-~~~~i~~~~~~ 178 (202)
T cd04726 113 VEDPEKRAKLLKLGVDIVILHRGID-AQAAGG------WWPEDDLKKVKKL-----LGVKVAVAGG-I-TPDTLPEFKKA 178 (202)
T ss_pred CCCHHHHHHHHHCCCCEEEEcCccc-ccccCC------CCCHHHHHHHHhh-----cCCCEEEECC-c-CHHHHHHHHhc
Confidence 7799999998888999999998754 333331 1233445555443 5777777777 4 59999999854
Q ss_pred CCCccEEecCccc
Q 004491 715 TKGVHGFYGASSM 727 (749)
Q Consensus 715 ~~~~~Gf~g~Ss~ 727 (749)
+++|++.+|++
T Consensus 179 --Gad~vvvGsai 189 (202)
T cd04726 179 --GADIVIVGRAI 189 (202)
T ss_pred --CCCEEEEeehh
Confidence 78999999987
No 35
>cd00381 IMPDH IMPDH: The catalytic domain of the inosine monophosphate dehydrogenase. IMPDH catalyzes the NAD-dependent oxidation of inosine 5'-monophosphate (IMP) to xanthosine 5' monophosphate (XMP). It is a rate-limiting step in the de novo synthesis of the guanine nucleotides. There is often a CBS domain inserted in the middle of this domain, which is proposed to play a regulatory role. IMPDH is a key enzyme in the regulation of cell proliferation and differentiation. It has been identified as an attractive target for developing chemotherapeutic agents.
Probab=97.07 E-value=0.019 Score=62.74 Aligned_cols=187 Identities=22% Similarity=0.215 Sum_probs=107.9
Q ss_pred HhhcCCCeEEeccccchhhh----hhhhcCCcEEEEeccccccccCCccccccccccCchHHHHHhhhhhcCCCCCCc-e
Q 004491 488 QIDKGLPIIGAGAGTGISAK----FEEAGGVDLIVLYNSGRFRMAGRGSLAGLLPFADANAVVLEMANEVLPVVKEVP-V 562 (749)
Q Consensus 488 ~i~~~~piig~gaGtGlsAk----~ae~gGaDli~~ynsGrfR~~G~~SlagllpygdaN~iv~e~~~eilp~v~~tP-V 562 (749)
.+.-..||+.+...+...++ .++.||.-+|- +.++ ..++ .++.++ +|.-+ |
T Consensus 30 ~~~l~~Piv~apM~~vt~~~ma~ava~~GglGvi~----------------~~~~---~~~~-~~~i~~----vk~~l~v 85 (325)
T cd00381 30 NITLNIPLVSAPMDTVTESEMAIAMARLGGIGVIH----------------RNMS---IEEQ-AEEVRK----VKGRLLV 85 (325)
T ss_pred ccccCCCEEecCCCcCCcHHHHHHHHHCCCEEEEe----------------CCCC---HHHH-HHHHHH----hccCceE
Confidence 45668899997766555544 66677766643 1111 1222 223333 23322 3
Q ss_pred EEeeccCCCCCCHHHHHHHHHHcCcccee-cCCcccccchhhhhhhhhcCCchHHHHHHHHHHHHcC--Cccc-ccccCH
Q 004491 563 LAGVCGTDPFRRVDYFLKQLESIGFFGVQ-NFPTVGLFDGNFRQNLEETGMGYGLEVEMIDKAHKMG--LLTT-PYAFNE 638 (749)
Q Consensus 563 iaGv~atDP~~~~~~~l~~lk~~Gf~GV~-NfPTvgliDG~fR~~LEe~G~gy~~EVemi~~A~~~g--l~T~-~yvf~~ 638 (749)
.+.+ +.+ .+....++.|.+.|..-|. |+- + |-. +.=+++|+..++.. +.-+ +.|.+.
T Consensus 86 ~~~~-~~~--~~~~~~~~~l~eagv~~I~vd~~--------~-------G~~-~~~~~~i~~ik~~~p~v~Vi~G~v~t~ 146 (325)
T cd00381 86 GAAV-GTR--EDDKERAEALVEAGVDVIVIDSA--------H-------GHS-VYVIEMIKFIKKKYPNVDVIAGNVVTA 146 (325)
T ss_pred EEec-CCC--hhHHHHHHHHHhcCCCEEEEECC--------C-------CCc-HHHHHHHHHHHHHCCCceEEECCCCCH
Confidence 3333 233 2456788899998887653 331 1 111 22367788888776 5544 689999
Q ss_pred HHHHHHHhccCcEEEeccCC----CcccccccccccCHHHHHHHHHHHHHHHHHhCCCeEEEEccCCCCCHHHHHHHHhh
Q 004491 639 GEAVKMAKAGADIIVAHMGL----TTSGSIGAKTALSLDESVDRVQAIADAAHRINPDAIVLCHGGPISSPSEAEFILKR 714 (749)
Q Consensus 639 eqa~~Ma~AGaDiiv~h~Gl----T~gG~~Ga~~~~sl~~~~~~~~~i~~aa~~~~pdii~l~hGGPi~~p~d~~~~l~~ 714 (749)
++|+++.++|||.|++|+|= ++....|.. ..++ ..+.++.+++++. ++-|+.-|| |.++.|+...+.
T Consensus 147 ~~A~~l~~aGaD~I~vg~g~G~~~~t~~~~g~g-~p~~----~~i~~v~~~~~~~--~vpVIA~GG-I~~~~di~kAla- 217 (325)
T cd00381 147 EAARDLIDAGADGVKVGIGPGSICTTRIVTGVG-VPQA----TAVADVAAAARDY--GVPVIADGG-IRTSGDIVKALA- 217 (325)
T ss_pred HHHHHHHhcCCCEEEECCCCCcCcccceeCCCC-CCHH----HHHHHHHHHHhhc--CCcEEecCC-CCCHHHHHHHHH-
Confidence 99999999999999998752 111111111 1111 2223333444433 455667766 999999999995
Q ss_pred CCCccEEecCccc
Q 004491 715 TKGVHGFYGASSM 727 (749)
Q Consensus 715 ~~~~~Gf~g~Ss~ 727 (749)
.+++|-.-+|.|
T Consensus 218 -~GA~~VmiGt~f 229 (325)
T cd00381 218 -AGADAVMLGSLL 229 (325)
T ss_pred -cCCCEEEecchh
Confidence 466776665544
No 36
>cd04729 NanE N-acetylmannosamine-6-phosphate epimerase (NanE) converts N-acetylmannosamine-6-phosphate to N-acetylglucosamine-6-phosphate. This reaction is part of the pathway that allows the usage of sialic acid as a carbohydrate source. Sialic acids are a family of related sugars that are found as a component of glycoproteins, gangliosides, and other sialoglycoconjugates.
Probab=97.06 E-value=0.0017 Score=66.16 Aligned_cols=127 Identities=24% Similarity=0.230 Sum_probs=82.7
Q ss_pred HHHHHHHHcCccceecCCcccccchhhhhhhhhcCCchHHHHHHHHHHHHcC-CcccccccCHHHHHHHHhccCcEEEe-
Q 004491 577 YFLKQLESIGFFGVQNFPTVGLFDGNFRQNLEETGMGYGLEVEMIDKAHKMG-LLTTPYAFNEGEAVKMAKAGADIIVA- 654 (749)
Q Consensus 577 ~~l~~lk~~Gf~GV~NfPTvgliDG~fR~~LEe~G~gy~~EVemi~~A~~~g-l~T~~yvf~~eqa~~Ma~AGaDiiv~- 654 (749)
.+++.+++.|-.-|.= |...+.. ..+ +.=.++++.+++.+ +..++=+.+++++++..++|+|+|+.
T Consensus 83 ~~~~~a~~aGad~I~~-------~~~~~~~--p~~---~~~~~~i~~~~~~g~~~iiv~v~t~~ea~~a~~~G~d~i~~~ 150 (219)
T cd04729 83 EEVDALAAAGADIIAL-------DATDRPR--PDG---ETLAELIKRIHEEYNCLLMADISTLEEALNAAKLGFDIIGTT 150 (219)
T ss_pred HHHHHHHHcCCCEEEE-------eCCCCCC--CCC---cCHHHHHHHHHHHhCCeEEEECCCHHHHHHHHHcCCCEEEcc
Confidence 3788889998865432 2211110 000 01126888999998 88888899999999999999999987
Q ss_pred ccCCCcccccccccccCHHHHHHHHHHHHHHHHHhCCCeEEEEccCCCCCHHHHHHHHhhCCCccEEecCccccc
Q 004491 655 HMGLTTSGSIGAKTALSLDESVDRVQAIADAAHRINPDAIVLCHGGPISSPSEAEFILKRTKGVHGFYGASSMER 729 (749)
Q Consensus 655 h~GlT~gG~~Ga~~~~sl~~~~~~~~~i~~aa~~~~pdii~l~hGGPi~~p~d~~~~l~~~~~~~Gf~g~Ss~ER 729 (749)
|.|.|.... . ....++ +.++++.+.. ++-+++ +|-|.+|+|++.+++. +++|..-+|++=|
T Consensus 151 ~~g~t~~~~-~-~~~~~~----~~l~~i~~~~-----~ipvia-~GGI~~~~~~~~~l~~--GadgV~vGsal~~ 211 (219)
T cd04729 151 LSGYTEETA-K-TEDPDF----ELLKELRKAL-----GIPVIA-EGRINSPEQAAKALEL--GADAVVVGSAITR 211 (219)
T ss_pred Ccccccccc-C-CCCCCH----HHHHHHHHhc-----CCCEEE-eCCCCCHHHHHHHHHC--CCCEEEEchHHhC
Confidence 567654322 1 111222 2334443322 334444 6679999999999964 5899999998754
No 37
>TIGR01037 pyrD_sub1_fam dihydroorotate dehydrogenase (subfamily 1) family protein. This family includes subfamily 1 dihydroorotate dehydrogenases while excluding the closely related subfamily 2 (TIGR01036). This family also includes a number of uncharacterized proteins and a domain of dihydropyrimidine dehydrogenase. The uncharacterized proteins might all be dihydroorotate dehydrogenase.
Probab=97.05 E-value=0.01 Score=63.20 Aligned_cols=154 Identities=19% Similarity=0.137 Sum_probs=87.1
Q ss_pred CCceEEeeccCCCCCCHHHHHHHHHHcC--cccee-cC--CcccccchhhhhhhhhcCCchHHHHHHHHHHHHc-CCccc
Q 004491 559 EVPVLAGVCGTDPFRRVDYFLKQLESIG--FFGVQ-NF--PTVGLFDGNFRQNLEETGMGYGLEVEMIDKAHKM-GLLTT 632 (749)
Q Consensus 559 ~tPViaGv~atDP~~~~~~~l~~lk~~G--f~GV~-Nf--PTvgliDG~fR~~LEe~G~gy~~EVemi~~A~~~-gl~T~ 632 (749)
++|+++-+++.||- ++-+..+.+++.| +.+|. |+ |..-.....+-++. +.=.|+++..++. ++.-+
T Consensus 90 ~~pl~~qi~g~~~~-~~~~~a~~~~~~~~~~d~ielN~~cP~~~~~g~~l~~~~-------~~~~eiv~~vr~~~~~pv~ 161 (300)
T TIGR01037 90 PTPLIASVYGSSVE-EFAEVAEKLEKAPPYVDAYELNLSCPHVKGGGIAIGQDP-------ELSADVVKAVKDKTDVPVF 161 (300)
T ss_pred CCcEEEEeecCCHH-HHHHHHHHHHhccCccCEEEEECCCCCCCCCccccccCH-------HHHHHHHHHHHHhcCCCEE
Confidence 46999999999983 5666777787764 66653 44 55421122222222 2335667777664 33211
Q ss_pred -ccccCH----HHHHHHHhccCcEEEeccCCC----------------cccccccccccCHHHHHHHHHHHHHHHHHhCC
Q 004491 633 -PYAFNE----GEAVKMAKAGADIIVAHMGLT----------------TSGSIGAKTALSLDESVDRVQAIADAAHRINP 691 (749)
Q Consensus 633 -~yvf~~----eqa~~Ma~AGaDiiv~h~GlT----------------~gG~~Ga~~~~sl~~~~~~~~~i~~aa~~~~p 691 (749)
=.--+. +-|+.+.++|+|.|++|-++- .||..|.. . ..-+.+.+.+|.+ .++
T Consensus 162 vKi~~~~~~~~~~a~~l~~~G~d~i~v~nt~~~~~~~~~~~~~~~~~~~gg~sg~~-~--~~~~l~~v~~i~~---~~~- 234 (300)
T TIGR01037 162 AKLSPNVTDITEIAKAAEEAGADGLTLINTLRGMKIDIKTGKPILANKTGGLSGPA-I--KPIALRMVYDVYK---MVD- 234 (300)
T ss_pred EECCCChhhHHHHHHHHHHcCCCEEEEEccCCccccccccCceeeCCCCccccchh-h--hHHHHHHHHHHHh---cCC-
Confidence 000122 335666789999999985321 11221110 0 0012233333332 233
Q ss_pred CeEEEEccCCCCCHHHHHHHHhhCCCccEEecCcccccch
Q 004491 692 DAIVLCHGGPISSPSEAEFILKRTKGVHGFYGASSMERLP 731 (749)
Q Consensus 692 dii~l~hGGPi~~p~d~~~~l~~~~~~~Gf~g~Ss~ERlP 731 (749)
+-++.-|-|.+|+|++.++. .++++..-++.+=+=|
T Consensus 235 --ipvi~~GGI~s~~da~~~l~--~GAd~V~igr~~l~~p 270 (300)
T TIGR01037 235 --IPIIGVGGITSFEDALEFLM--AGASAVQVGTAVYYRG 270 (300)
T ss_pred --CCEEEECCCCCHHHHHHHHH--cCCCceeecHHHhcCc
Confidence 33445677999999999995 4689988888776666
No 38
>PRK13125 trpA tryptophan synthase subunit alpha; Provisional
Probab=97.02 E-value=0.014 Score=60.90 Aligned_cols=169 Identities=18% Similarity=0.214 Sum_probs=104.0
Q ss_pred HhhhhhcCCCCCCceEEeeccCCCCCCHHHHHHHHHHcCccceecCCcccccchhhhhhhhhcCCchHHHHHHHHHHHHc
Q 004491 548 EMANEVLPVVKEVPVLAGVCGTDPFRRVDYFLKQLESIGFFGVQNFPTVGLFDGNFRQNLEETGMGYGLEVEMIDKAHKM 627 (749)
Q Consensus 548 e~~~eilp~v~~tPViaGv~atDP~~~~~~~l~~lk~~Gf~GV~NfPTvgliDG~fR~~LEe~G~gy~~EVemi~~A~~~ 627 (749)
++.+++-..+ ++|++.=+--++-..+.++|++++++.|..||.-- |=.+ +..| .=-++++.+++.
T Consensus 64 ~~v~~vr~~~-~~Pl~lM~y~n~~~~~~~~~i~~~~~~Gadgvii~------dlp~-e~~~-------~~~~~~~~~~~~ 128 (244)
T PRK13125 64 PLLEEVRKDV-SVPIILMTYLEDYVDSLDNFLNMARDVGADGVLFP------DLLI-DYPD-------DLEKYVEIIKNK 128 (244)
T ss_pred HHHHHHhccC-CCCEEEEEecchhhhCHHHHHHHHHHcCCCEEEEC------CCCC-CcHH-------HHHHHHHHHHHc
Confidence 5666665553 58985323334424589999999999999999852 0000 0111 112689999999
Q ss_pred CCcccccccC---HHHHHHHHhccCcEEEeccCCCcccccccccccCHHHHHHHHHHHHHHHHHhCCCeEEEEccCCCCC
Q 004491 628 GLLTTPYAFN---EGEAVKMAKAGADIIVAHMGLTTSGSIGAKTALSLDESVDRVQAIADAAHRINPDAIVLCHGGPISS 704 (749)
Q Consensus 628 gl~T~~yvf~---~eqa~~Ma~AGaDiiv~h~GlT~gG~~Ga~~~~sl~~~~~~~~~i~~aa~~~~pdii~l~hGGPi~~ 704 (749)
|+-....+-. .+..+..++..-++++. +. .+|+ |.+-..++.+ +++++. +..++.- ++-||-|.+
T Consensus 129 Gl~~~~~v~p~T~~e~l~~~~~~~~~~l~m--sv-~~~~-g~~~~~~~~~---~i~~lr----~~~~~~~-i~v~gGI~~ 196 (244)
T PRK13125 129 GLKPVFFTSPKFPDLLIHRLSKLSPLFIYY--GL-RPAT-GVPLPVSVER---NIKRVR----NLVGNKY-LVVGFGLDS 196 (244)
T ss_pred CCCEEEEECCCCCHHHHHHHHHhCCCEEEE--Ee-CCCC-CCCchHHHHH---HHHHHH----HhcCCCC-EEEeCCcCC
Confidence 9988777665 56778888888888764 32 2333 3322222333 333332 2222221 344788999
Q ss_pred HHHHHHHHhhCCCccEEecCccccc-c--hHHHHHHHHHHhhcc
Q 004491 705 PSEAEFILKRTKGVHGFYGASSMER-L--PVEQAITSTMRQYKS 745 (749)
Q Consensus 705 p~d~~~~l~~~~~~~Gf~g~Ss~ER-l--P~E~ai~~~~~~FK~ 745 (749)
|++++.+++ .++|||+-||++=+ + .-.++..+.++++|.
T Consensus 197 ~e~i~~~~~--~gaD~vvvGSai~~~~~~~~~~~~~~~~~~~~~ 238 (244)
T PRK13125 197 PEDARDALS--AGADGVVVGTAFIEELEKNGVESALNLLKKIRG 238 (244)
T ss_pred HHHHHHHHH--cCCCEEEECHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 999999984 46899999999833 2 112445566666653
No 39
>CHL00200 trpA tryptophan synthase alpha subunit; Provisional
Probab=96.97 E-value=0.02 Score=60.96 Aligned_cols=150 Identities=20% Similarity=0.328 Sum_probs=95.8
Q ss_pred HHHHhhhhhcCCCCCCceEEeeccCCC-CC-CHHHHHHHHHHcCccceecCCcccccchhhhhhhhhcCCchHHHHHHHH
Q 004491 545 VVLEMANEVLPVVKEVPVLAGVCGTDP-FR-RVDYFLKQLESIGFFGVQNFPTVGLFDGNFRQNLEETGMGYGLEVEMID 622 (749)
Q Consensus 545 iv~e~~~eilp~v~~tPViaGv~atDP-~~-~~~~~l~~lk~~Gf~GV~NfPTvgliDG~fR~~LEe~G~gy~~EVemi~ 622 (749)
-++++.+++-.. .++|++. ..=.+| |. -+++|++++++.|+.||. +|=. -++.--+++.
T Consensus 78 ~~~~~~~~~r~~-~~~p~vl-m~Y~N~i~~~G~e~F~~~~~~aGvdgvi-ipDL----------------P~ee~~~~~~ 138 (263)
T CHL00200 78 KILSILSEVNGE-IKAPIVI-FTYYNPVLHYGINKFIKKISQAGVKGLI-IPDL----------------PYEESDYLIS 138 (263)
T ss_pred HHHHHHHHHhcC-CCCCEEE-EecccHHHHhCHHHHHHHHHHcCCeEEE-ecCC----------------CHHHHHHHHH
Confidence 356777776544 5689652 222355 44 689999999999999986 3321 1333447888
Q ss_pred HHHHcCCccccccc---CHHHHHHHHhccCcEE-E-eccCCCcccccccccccCHHHHHHHHHHHHHHHHHhCCCeEEEE
Q 004491 623 KAHKMGLLTTPYAF---NEGEAVKMAKAGADII-V-AHMGLTTSGSIGAKTALSLDESVDRVQAIADAAHRINPDAIVLC 697 (749)
Q Consensus 623 ~A~~~gl~T~~yvf---~~eqa~~Ma~AGaDii-v-~h~GlT~gG~~Ga~~~~sl~~~~~~~~~i~~aa~~~~pdii~l~ 697 (749)
.+++.|+-.++++- +++..+.+++..-..| | ..+|.| |.++.+ .+.+.++.+..++...-.|++
T Consensus 139 ~~~~~gi~~I~lv~PtT~~eri~~i~~~a~gFIY~vS~~GvT-----G~~~~~-----~~~~~~~i~~ir~~t~~Pi~v- 207 (263)
T CHL00200 139 VCNLYNIELILLIAPTSSKSRIQKIARAAPGCIYLVSTTGVT-----GLKTEL-----DKKLKKLIETIKKMTNKPIIL- 207 (263)
T ss_pred HHHHcCCCEEEEECCCCCHHHHHHHHHhCCCcEEEEcCCCCC-----CCCccc-----cHHHHHHHHHHHHhcCCCEEE-
Confidence 99999998777664 4556666665554333 3 345544 444222 223344444455543333443
Q ss_pred ccCCCCCHHHHHHHHhhCCCccEEecCccc
Q 004491 698 HGGPISSPSEAEFILKRTKGVHGFYGASSM 727 (749)
Q Consensus 698 hGGPi~~p~d~~~~l~~~~~~~Gf~g~Ss~ 727 (749)
|+-|++|++++.+.+. ++||++-||++
T Consensus 208 -GFGI~~~e~~~~~~~~--GADGvVVGSal 234 (263)
T CHL00200 208 -GFGISTSEQIKQIKGW--NINGIVIGSAC 234 (263)
T ss_pred -ECCcCCHHHHHHHHhc--CCCEEEECHHH
Confidence 9999999999998743 57999999998
No 40
>cd00945 Aldolase_Class_I Class I aldolases. The class I aldolases use an active-site lysine which stablilzes a reaction intermediates via Schiff base formation, and have TIM beta/alpha barrel fold. The members of this family include 2-keto-3-deoxy-6-phosphogluconate (KDPG) and 2-keto-4-hydroxyglutarate (KHG) aldolases, transaldolase, dihydrodipicolinate synthase sub-family, Type I 3-dehydroquinate dehydratase, DeoC and DhnA proteins, and metal-independent fructose-1,6-bisphosphate aldolase. Although structurally similar, the class II aldolases use a different mechanism and are believed to have an independent evolutionary origin.
Probab=96.94 E-value=0.023 Score=55.16 Aligned_cols=138 Identities=22% Similarity=0.234 Sum_probs=87.9
Q ss_pred CCceEEeeccCC---CCCCHHHHHHHHHHcCccceecCCcccccchhhhhhhhhcCCchHHHHHHHHHHHH---cCCccc
Q 004491 559 EVPVLAGVCGTD---PFRRVDYFLKQLESIGFFGVQNFPTVGLFDGNFRQNLEETGMGYGLEVEMIDKAHK---MGLLTT 632 (749)
Q Consensus 559 ~tPViaGv~atD---P~~~~~~~l~~lk~~Gf~GV~NfPTvgliDG~fR~~LEe~G~gy~~EVemi~~A~~---~gl~T~ 632 (749)
++||++|+.+.. ++.+.-+..++.++.|..+|.=.|.... + ++. ..+.=++.++..++ .++..+
T Consensus 48 ~~~v~~~v~~~~~~~~~~~~~~~a~~a~~~Gad~i~v~~~~~~-----~--~~~---~~~~~~~~~~~i~~~~~~~~pv~ 117 (201)
T cd00945 48 DVPVIVVVGFPTGLTTTEVKVAEVEEAIDLGADEIDVVINIGS-----L--KEG---DWEEVLEEIAAVVEAADGGLPLK 117 (201)
T ss_pred CCeEEEEecCCCCCCcHHHHHHHHHHHHHcCCCEEEEeccHHH-----H--hCC---CHHHHHHHHHHHHHHhcCCceEE
Confidence 599999998876 4577888899999999999986554321 1 100 11222344444444 489988
Q ss_pred cccc-----CHHHHHHH----HhccCcEEEeccCCCcccccccccccCHHHHHHHHHHHHHHHHHhCCCeEEEEccCCCC
Q 004491 633 PYAF-----NEGEAVKM----AKAGADIIVAHMGLTTSGSIGAKTALSLDESVDRVQAIADAAHRINPDAIVLCHGGPIS 703 (749)
Q Consensus 633 ~yvf-----~~eqa~~M----a~AGaDiiv~h~GlT~gG~~Ga~~~~sl~~~~~~~~~i~~aa~~~~pdii~l~hGGPi~ 703 (749)
.|.+ +.++..++ .+.|+|.|-...|.+.++ .+++. +++|.+. .++++-+++.|| +.
T Consensus 118 iy~~p~~~~~~~~~~~~~~~~~~~g~~~iK~~~~~~~~~-------~~~~~----~~~i~~~---~~~~~~v~~~gg-~~ 182 (201)
T cd00945 118 VILETRGLKTADEIAKAARIAAEAGADFIKTSTGFGGGG-------ATVED----VKLMKEA---VGGRVGVKAAGG-IK 182 (201)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHhCCCEEEeCCCCCCCC-------CCHHH----HHHHHHh---cccCCcEEEECC-CC
Confidence 8887 66665544 579999999888766422 23333 2333322 223445666666 34
Q ss_pred CHHHHHHHHhhCCCccEEec
Q 004491 704 SPSEAEFILKRTKGVHGFYG 723 (749)
Q Consensus 704 ~p~d~~~~l~~~~~~~Gf~g 723 (749)
+++++...+.. +++|.+.
T Consensus 183 ~~~~~~~~~~~--Ga~g~~~ 200 (201)
T cd00945 183 TLEDALAAIEA--GADGIGT 200 (201)
T ss_pred CHHHHHHHHHh--ccceeec
Confidence 78888888855 6788764
No 41
>PLN02274 inosine-5'-monophosphate dehydrogenase
Probab=96.90 E-value=0.015 Score=67.04 Aligned_cols=162 Identities=21% Similarity=0.238 Sum_probs=100.3
Q ss_pred CCcccccHHHHHHHHHHHh-------hcCCCeEEeccccch----hhhhhhhcCCcEEEEeccccccccCCccccccccc
Q 004491 471 RPETLQRTQAILSKLKYQI-------DKGLPIIGAGAGTGI----SAKFEEAGGVDLIVLYNSGRFRMAGRGSLAGLLPF 539 (749)
Q Consensus 471 ~~~~~~~r~~il~~L~~~i-------~~~~piig~gaGtGl----sAk~ae~gGaDli~~ynsGrfR~~G~~Slagllpy 539 (749)
+.--+.+|+.|++.+..-- ++|+.++|++.|++- -++...+.|+|+|++..+
T Consensus 207 ~LvGvITr~DIlk~~~~p~~~~~~~d~~~~l~vgaavg~~~~~~~r~~~l~~ag~d~i~iD~~----------------- 269 (505)
T PLN02274 207 ELVDLVTRTDVKRVKGYPKLGKPSVGKDGKLLVGAAIGTRESDKERLEHLVKAGVDVVVLDSS----------------- 269 (505)
T ss_pred eEEEEEEHHHHHHHhhCcCccccccCCCCCEEEEEEEcCCccHHHHHHHHHHcCCCEEEEeCC-----------------
Confidence 4567888999888887632 368999999999964 456667789999986441
Q ss_pred cCchHHHHHhhhhhcCCCCCCceEEeeccCCCCCCHHHHHHHHHHcCccceecCCcccccchhhhhhhhhcCCchHHHHH
Q 004491 540 ADANAVVLEMANEVLPVVKEVPVLAGVCGTDPFRRVDYFLKQLESIGFFGVQNFPTVGLFDGNFRQNLEETGMGYGLEVE 619 (749)
Q Consensus 540 gdaN~iv~e~~~eilp~v~~tPViaGv~atDP~~~~~~~l~~lk~~Gf~GV~NfPTvgliDG~fR~~LEe~G~gy~~EVe 619 (749)
..-...+.+++++||+ +||.+-+|
T Consensus 270 -----------------------------~g~~~~~~~~i~~ik~-------~~p~~~vi-------------------- 293 (505)
T PLN02274 270 -----------------------------QGDSIYQLEMIKYIKK-------TYPELDVI-------------------- 293 (505)
T ss_pred -----------------------------CCCcHHHHHHHHHHHH-------hCCCCcEE--------------------
Confidence 0111122234444443 23322222
Q ss_pred HHHHHHHcCCcccccccCHHHHHHHHhccCcEEEec--cCCCcccc----cccccccCHHHHHHHHHHHHHHHHHhCCCe
Q 004491 620 MIDKAHKMGLLTTPYAFNEGEAVKMAKAGADIIVAH--MGLTTSGS----IGAKTALSLDESVDRVQAIADAAHRINPDA 693 (749)
Q Consensus 620 mi~~A~~~gl~T~~yvf~~eqa~~Ma~AGaDiiv~h--~GlT~gG~----~Ga~~~~sl~~~~~~~~~i~~aa~~~~pdi 693 (749)
.+-|-+.++|+.+.++|||+|++- -|...... .|.... .++..+.++ +++. ++
T Consensus 294 ------------~g~v~t~e~a~~a~~aGaD~i~vg~g~G~~~~t~~~~~~g~~~~----~~i~~~~~~---~~~~--~v 352 (505)
T PLN02274 294 ------------GGNVVTMYQAQNLIQAGVDGLRVGMGSGSICTTQEVCAVGRGQA----TAVYKVASI---AAQH--GV 352 (505)
T ss_pred ------------EecCCCHHHHHHHHHcCcCEEEECCCCCccccCccccccCCCcc----cHHHHHHHH---HHhc--CC
Confidence 234667999999999999999763 33222221 122221 233233333 3332 45
Q ss_pred EEEEccCCCCCHHHHHHHHhhCCCccEEecCccccc
Q 004491 694 IVLCHGGPISSPSEAEFILKRTKGVHGFYGASSMER 729 (749)
Q Consensus 694 i~l~hGGPi~~p~d~~~~l~~~~~~~Gf~g~Ss~ER 729 (749)
-|++-|| |.+|.|+...|.. ++++..-||.|=+
T Consensus 353 pVIadGG-I~~~~di~kAla~--GA~~V~vGs~~~~ 385 (505)
T PLN02274 353 PVIADGG-ISNSGHIVKALTL--GASTVMMGSFLAG 385 (505)
T ss_pred eEEEeCC-CCCHHHHHHHHHc--CCCEEEEchhhcc
Confidence 6667766 9999999999954 6788888887633
No 42
>PRK13957 indole-3-glycerol-phosphate synthase; Provisional
Probab=96.88 E-value=0.032 Score=59.19 Aligned_cols=170 Identities=18% Similarity=0.197 Sum_probs=113.0
Q ss_pred hhhhhhhcCCcEEEEeccccccccCCccccccccccCchHHHHHhhhhhcCCCCCCceEEeeccCCCCCCHHHHHHHHHH
Q 004491 505 SAKFEEAGGVDLIVLYNSGRFRMAGRGSLAGLLPFADANAVVLEMANEVLPVVKEVPVLAGVCGTDPFRRVDYFLKQLES 584 (749)
Q Consensus 505 sAk~ae~gGaDli~~ynsGrfR~~G~~SlagllpygdaN~iv~e~~~eilp~v~~tPViaGv~atDP~~~~~~~l~~lk~ 584 (749)
.|+.-+.+||+-|=++.-+.| |+-+.+-+....+.+ +.|||+ -|-..+-.+ +.+-+.
T Consensus 66 ~A~~y~~~GA~aISVlTe~~~-------------F~Gs~~~l~~v~~~v-----~~PvL~----KDFIid~~Q-I~ea~~ 122 (247)
T PRK13957 66 IAKTYETLGASAISVLTDQSY-------------FGGSLEDLKSVSSEL-----KIPVLR----KDFILDEIQ-IREARA 122 (247)
T ss_pred HHHHHHHCCCcEEEEEcCCCc-------------CCCCHHHHHHHHHhc-----CCCEEe----ccccCCHHH-HHHHHH
Confidence 466778899999988777766 555555555444332 468876 454444444 556666
Q ss_pred cCccceecCCcccccchhhhhhhhhcCCchHHHHHHHHHHHHcCCcccccccCHHHHHHHHhccCcEEEeccCCCccccc
Q 004491 585 IGFFGVQNFPTVGLFDGNFRQNLEETGMGYGLEVEMIDKAHKMGLLTTPYAFNEGEAVKMAKAGADIIVAHMGLTTSGSI 664 (749)
Q Consensus 585 ~Gf~GV~NfPTvgliDG~fR~~LEe~G~gy~~EVemi~~A~~~gl~T~~yvf~~eqa~~Ma~AGaDiiv~h~GlT~gG~~ 664 (749)
.|=..| =||-.- ++-++=-++++.|+++||=.+-=|.|++|...-.++||++|.++-
T Consensus 123 ~GADav------LLI~~~---------L~~~~l~~l~~~a~~lGle~LVEVh~~~El~~a~~~ga~iiGINn-------- 179 (247)
T PRK13957 123 FGASAI------LLIVRI---------LTPSQIKSFLKHASSLGMDVLVEVHTEDEAKLALDCGAEIIGINT-------- 179 (247)
T ss_pred cCCCEE------EeEHhh---------CCHHHHHHHHHHHHHcCCceEEEECCHHHHHHHHhCCCCEEEEeC--------
Confidence 999998 222221 122222468999999999999999999999999999999997652
Q ss_pred ccccccCHHHHHHHHHHHHHHHHHhCCCeEEEEccCCCCCHHHHHHHHhhCCCccEEecCccccc
Q 004491 665 GAKTALSLDESVDRVQAIADAAHRINPDAIVLCHGGPISSPSEAEFILKRTKGVHGFYGASSMER 729 (749)
Q Consensus 665 Ga~~~~sl~~~~~~~~~i~~aa~~~~pdii~l~hGGPi~~p~d~~~~l~~~~~~~Gf~g~Ss~ER 729 (749)
.+-.|++--.....++ +..+.++++++.-+| |.+|+|++++. +. ++||.=|+++=+
T Consensus 180 --RdL~t~~vd~~~~~~L---~~~ip~~~~~IsESG-I~t~~d~~~l~-~~--~davLvG~~lm~ 235 (247)
T PRK13957 180 --RDLDTFQIHQNLVEEV---AAFLPPNIVKVGESG-IESRSDLDKFR-KL--VDAALIGTYFME 235 (247)
T ss_pred --CCCccceECHHHHHHH---HhhCCCCcEEEEcCC-CCCHHHHHHHH-Hh--CCEEEECHHHhC
Confidence 1222332223333444 344556777666554 99999999986 42 789877766533
No 43
>TIGR02317 prpB methylisocitrate lyase. Members of this family are methylisocitrate lyase, also called (2S,3R)-3-hydroxybutane-1,2,3-tricarboxylate pyruvate-lyase. This enzyme acts in propionate metabolism. It cleaves a carbon-carbon bond to convert 2-methylisocitrate to pyruvate plus succinate. Some members of this family have been annotated, incorrectly it seems, as the related protein carboxyphosphoenolpyruvate phosphomutase, which is involved in synthesizing the antibiotic bialaphos in Streptomyces hygroscopicus.
Probab=96.88 E-value=0.03 Score=60.38 Aligned_cols=155 Identities=23% Similarity=0.287 Sum_probs=95.9
Q ss_pred HHHHHHhhcCCCeEEeccccchhhhhhhhcCCcEEEEeccccccccCCccccccccccCchH----HHHHhhhhhcCCCC
Q 004491 483 SKLKYQIDKGLPIIGAGAGTGISAKFEEAGGVDLIVLYNSGRFRMAGRGSLAGLLPFADANA----VVLEMANEVLPVVK 558 (749)
Q Consensus 483 ~~L~~~i~~~~piig~gaGtGlsAk~ae~gGaDli~~ynsGrfR~~G~~SlagllpygdaN~----iv~e~~~eilp~v~ 558 (749)
.+||+.+++++|++-.++--++|||.+|+.|.|-|.+=.+| ++..+.|-|.+- -+++.+++|.-.+
T Consensus 3 ~~lr~l~~~~~~l~~p~~~Da~SAri~e~aGf~Ai~~sg~~---------~a~~lG~pD~g~lt~~e~~~~~~~I~~~~- 72 (285)
T TIGR02317 3 KAFRAALAKEDILQIPGAINAMAALLAERAGFEAIYLSGAA---------VAASLGLPDLGITTLDEVAEDARRITRVT- 72 (285)
T ss_pred HHHHHHHhCCCcEEeCCCCCHHHHHHHHHcCCCEEEEcHHH---------HHHhCCCCCCCCCCHHHHHHHHHHHHhcc-
Confidence 46889999999999999999999999999999988753333 333444555332 2344456677666
Q ss_pred CCceEEeecc--CCCCCCHHHHHHHHHHcCccceec----CCcc-cccchhhhhhhhhcCCchHHHHHHHHHHHHc----
Q 004491 559 EVPVLAGVCG--TDPFRRVDYFLKQLESIGFFGVQN----FPTV-GLFDGNFRQNLEETGMGYGLEVEMIDKAHKM---- 627 (749)
Q Consensus 559 ~tPViaGv~a--tDP~~~~~~~l~~lk~~Gf~GV~N----fPTv-gliDG~fR~~LEe~G~gy~~EVemi~~A~~~---- 627 (749)
++||++=+-. .+ -.++.+-.+++.+.|.+||+= ||-- |...|+ .| ..-+.=++-|+.|++.
T Consensus 73 ~iPviaD~d~GyG~-~~~v~~tv~~~~~aG~agi~IEDq~~pK~cgh~~g~---~l----v~~ee~~~kI~Aa~~a~~~~ 144 (285)
T TIGR02317 73 DLPLLVDADTGFGE-AFNVARTVREMEDAGAAAVHIEDQVLPKRCGHLPGK---EL----VSREEMVDKIAAAVDAKRDE 144 (285)
T ss_pred CCCEEEECCCCCCC-HHHHHHHHHHHHHcCCeEEEEecCCCccccCCCCCc---cc----cCHHHHHHHHHHHHHhccCC
Confidence 5899975322 23 346667799999999999962 3311 222221 11 1122223444444442
Q ss_pred CCcccc----cc---cCH--HHHHHHHhccCcEEEec
Q 004491 628 GLLTTP----YA---FNE--GEAVKMAKAGADIIVAH 655 (749)
Q Consensus 628 gl~T~~----yv---f~~--eqa~~Ma~AGaDiiv~h 655 (749)
+++-++ |. +++ +-+++.++||||+|.+|
T Consensus 145 d~~IiARTDa~~~~g~deAI~Ra~ay~~AGAD~vfi~ 181 (285)
T TIGR02317 145 DFVIIARTDARAVEGLDAAIERAKAYVEAGADMIFPE 181 (285)
T ss_pred CEEEEEEcCcccccCHHHHHHHHHHHHHcCCCEEEeC
Confidence 233222 11 111 33567789999999998
No 44
>PF03060 NMO: Nitronate monooxygenase; InterPro: IPR004136 2-Nitropropane dioxygenase (1.13.11.32 from EC) catalyses the oxidation of nitroalkanes into their corresponding carbonyl compounds and nitrite using eithr FAD or FMN as a cofactor []. This entry also includes fatty acid synthase subunit beta (2.3.1.86 from EC), which catalyses the formation of long- chain fatty acids from acetyl-CoA, malonyl-CoA and NADPH. The beta subunit contains domains for: [acyl-carrier protein] acetyltransferase and malonyltransferase, S-acyl fatty acid synthase thioesterase, enoyl-[acyl-carrier protein] reductase, and 3-hydroxypalmitoyl-[acyl-carrier protein] dehydratase. ; GO: 0018580 nitronate monooxygenase activity, 0055114 oxidation-reduction process; PDB: 2Z6I_B 2Z6J_B 3BW2_A 3BW3_A 3BW4_A 2GJL_A 2GJN_A 3BO9_A.
Probab=96.70 E-value=0.036 Score=60.37 Aligned_cols=200 Identities=24% Similarity=0.321 Sum_probs=111.4
Q ss_pred HHHHHhhcCCCeEEeccc----cchhhhhhhhcCCcEEEEeccccccccCCccccccccccCchHHHHHhhhhhcCCCCC
Q 004491 484 KLKYQIDKGLPIIGAGAG----TGISAKFEEAGGVDLIVLYNSGRFRMAGRGSLAGLLPFADANAVVLEMANEVLPVVKE 559 (749)
Q Consensus 484 ~L~~~i~~~~piig~gaG----tGlsAk~ae~gGaDli~~ynsGrfR~~G~~SlagllpygdaN~iv~e~~~eilp~v~~ 559 (749)
+|-+...-.-|||-++.| .-|.|..+.+||.=+| ++ .|.+..++-.++ +++--...+
T Consensus 3 ~~t~~lgi~~PIiqapM~~is~~~LaaAVs~aGglG~l----------------~~--~~~~~~~l~~~i-~~~~~~t~~ 63 (330)
T PF03060_consen 3 RLTELLGIKYPIIQAPMGGISTPELAAAVSNAGGLGFL----------------GA--GGLTPEQLREEI-RKIRALTDK 63 (330)
T ss_dssp HHHHHHT-SSSEEE---TTTSSHHHHHHHHHTTSBEEE----------------EC--TTSSHHHHHHHH-HHHHHH-SS
T ss_pred hHHHHhCCCcCEEcCCCCCCChHHHHHHHHhCCCEeec----------------cc--cccChHHHHHHH-HHHHhhccc
Confidence 455566678899877654 4566777777765443 31 122223333333 222222333
Q ss_pred CceEEeeccCCCCCCHH----------HHHHHHHHcCccceecCCcccccchhhhhhhhh------cCCchHHHHHHHHH
Q 004491 560 VPVLAGVCGTDPFRRVD----------YFLKQLESIGFFGVQNFPTVGLFDGNFRQNLEE------TGMGYGLEVEMIDK 623 (749)
Q Consensus 560 tPViaGv~atDP~~~~~----------~~l~~lk~~Gf~GV~NfPTvgliDG~fR~~LEe------~G~gy~~EVemi~~ 623 (749)
|.=..+....+....+ .+++-..+.|.. ++.++...|++ ++.|.-. -+.+++
T Consensus 64 -pfgvnl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~v~~~~G~p~-~~~i~~ 131 (330)
T PF03060_consen 64 -PFGVNLFLPPPDPADEEDAWPKELGNAVLELCIEEGVP----------FEEQLDVALEAKPDVVSFGFGLPP-PEVIER 131 (330)
T ss_dssp --EEEEEETTSTTHHHH-HHHHHHTHHHHHHHHHHTT-S----------HHHHHHHHHHS--SEEEEESSSC--HHHHHH
T ss_pred -cccccccccCcccchhhhhhhhhhHHHHHHHHHHhCcc----------cccccccccccceEEEEeecccch-HHHHHH
Confidence 7544444444443333 223444455544 44444444443 2344431 357899
Q ss_pred HHHcCCcccccccCHHHHHHHHhccCcEEEeccCCCcccccccccccCHHHHHHHHHHHHHHHHHhCCCeEEEEccCCCC
Q 004491 624 AHKMGLLTTPYAFNEGEAVKMAKAGADIIVAHMGLTTSGSIGAKTALSLDESVDRVQAIADAAHRINPDAIVLCHGGPIS 703 (749)
Q Consensus 624 A~~~gl~T~~yvf~~eqa~~Ma~AGaDiiv~h~GlT~gG~~Ga~~~~sl~~~~~~~~~i~~aa~~~~pdii~l~hGGPi~ 703 (749)
.|+.|+..++-|-|+++|++..++|+|+||+- |.-.||..|.+.. ....+++++.++.. +-|+. .|-|.
T Consensus 132 l~~~gi~v~~~v~s~~~A~~a~~~G~D~iv~q-G~eAGGH~g~~~~----~~~~L~~~v~~~~~-----iPVia-AGGI~ 200 (330)
T PF03060_consen 132 LHAAGIKVIPQVTSVREARKAAKAGADAIVAQ-GPEAGGHRGFEVG----STFSLLPQVRDAVD-----IPVIA-AGGIA 200 (330)
T ss_dssp HHHTT-EEEEEESSHHHHHHHHHTT-SEEEEE--TTSSEE---SSG-----HHHHHHHHHHH-S-----S-EEE-ESS--
T ss_pred HHHcCCccccccCCHHHHHHhhhcCCCEEEEe-ccccCCCCCcccc----ceeeHHHHHhhhcC-----CcEEE-ecCcC
Confidence 99999999999999999999999999999998 8889999992222 44555566655443 45555 55599
Q ss_pred CHHHHHHHHhhCCCccEEecCccc
Q 004491 704 SPSEAEFILKRTKGVHGFYGASSM 727 (749)
Q Consensus 704 ~p~d~~~~l~~~~~~~Gf~g~Ss~ 727 (749)
+.+++...|. -+++|.+=|+-|
T Consensus 201 dg~~iaaal~--lGA~gV~~GTrF 222 (330)
T PF03060_consen 201 DGRGIAAALA--LGADGVQMGTRF 222 (330)
T ss_dssp SHHHHHHHHH--CT-SEEEESHHH
T ss_pred CHHHHHHHHH--cCCCEeecCCeE
Confidence 9999999995 478998888755
No 45
>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=96.70 E-value=0.039 Score=58.63 Aligned_cols=172 Identities=21% Similarity=0.206 Sum_probs=104.6
Q ss_pred HHHHHHHHHHhh-cCCCeEEecccc-----chhhhhhhhcCCcEEEEe-ccccccccCCccccccccccCchHHHHHhhh
Q 004491 479 QAILSKLKYQID-KGLPIIGAGAGT-----GISAKFEEAGGVDLIVLY-NSGRFRMAGRGSLAGLLPFADANAVVLEMAN 551 (749)
Q Consensus 479 ~~il~~L~~~i~-~~~piig~gaGt-----GlsAk~ae~gGaDli~~y-nsGrfR~~G~~SlagllpygdaN~iv~e~~~ 551 (749)
++.++++++..+ .+.|++---.|. .-.|+.+++.|+|.|-+. .+=.. .++|+ .|++.=+.+.|..+
T Consensus 75 ~~~~~~~~~~~~~~~~p~ivsi~g~~~~~~~~~a~~~~~~G~d~iElN~~cP~~--~~~g~-----~~~~~~~~~~eiv~ 147 (296)
T cd04740 75 EAFLEELLPWLREFGTPVIASIAGSTVEEFVEVAEKLADAGADAIELNISCPNV--KGGGM-----AFGTDPEAVAEIVK 147 (296)
T ss_pred HHHHHHHHHHhhcCCCcEEEEEecCCHHHHHHHHHHHHHcCCCEEEEECCCCCC--CCCcc-----cccCCHHHHHHHHH
Confidence 677778777655 367777655454 456777888899988663 22221 12221 23333356666655
Q ss_pred hhcCCCCCCceEEeeccCCCCCCHHHHHHHHHHcCccceecCCcccc--cchhhhhhhhhcCC-chH---------HHHH
Q 004491 552 EVLPVVKEVPVLAGVCGTDPFRRVDYFLKQLESIGFFGVQNFPTVGL--FDGNFRQNLEETGM-GYG---------LEVE 619 (749)
Q Consensus 552 eilp~v~~tPViaGv~atDP~~~~~~~l~~lk~~Gf~GV~NfPTvgl--iDG~fR~~LEe~G~-gy~---------~EVe 619 (749)
+|--.+ +.||+.-+..... +..++.+.+.+.|..||.=+-|..- +|...++-.-..+. ||. +-+.
T Consensus 148 ~vr~~~-~~Pv~vKl~~~~~--~~~~~a~~~~~~G~d~i~~~nt~~g~~~~~~~~~~~~~~~~gg~sg~~~~~~~~~~i~ 224 (296)
T cd04740 148 AVKKAT-DVPVIVKLTPNVT--DIVEIARAAEEAGADGLTLINTLKGMAIDIETRKPILGNVTGGLSGPAIKPIALRMVY 224 (296)
T ss_pred HHHhcc-CCCEEEEeCCCch--hHHHHHHHHHHcCCCEEEEECCCcccccccccCceeecCCcceecCcccchHHHHHHH
Confidence 555554 6899999865433 6788899999999999864444332 23222211111111 121 2344
Q ss_pred HHHHHHHcCCcccccccCHHHHHHHHhccCcEEEeccCCCc
Q 004491 620 MIDKAHKMGLLTTPYAFNEGEAVKMAKAGADIIVAHMGLTT 660 (749)
Q Consensus 620 mi~~A~~~gl~T~~yvf~~eqa~~Ma~AGaDiiv~h~GlT~ 660 (749)
.++++-+.-+....=+++.+++.++.++|||.+-+-=++..
T Consensus 225 ~i~~~~~ipii~~GGI~~~~da~~~l~~GAd~V~igra~l~ 265 (296)
T cd04740 225 QVYKAVEIPIIGVGGIASGEDALEFLMAGASAVQVGTANFV 265 (296)
T ss_pred HHHHhcCCCEEEECCCCCHHHHHHHHHcCCCEEEEchhhhc
Confidence 44444445677777789999999999999999877655544
No 46
>cd04731 HisF The cyclase subunit of imidazoleglycerol phosphate synthase (HisF). Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and plants, or peformed by a heterodimer (HisH-glutaminase and HisF-cyclase), like in bacteria.
Probab=96.59 E-value=0.046 Score=56.49 Aligned_cols=87 Identities=16% Similarity=0.220 Sum_probs=59.2
Q ss_pred HHHHHHHHhccCcEEEeccCCCcccccccccccCHHHHHHHHHHHHHHHHHhCCCeEEEEccCCCCCHHHHHHHHhhCCC
Q 004491 638 EGEAVKMAKAGADIIVAHMGLTTSGSIGAKTALSLDESVDRVQAIADAAHRINPDAIVLCHGGPISSPSEAEFILKRTKG 717 (749)
Q Consensus 638 ~eqa~~Ma~AGaDiiv~h~GlT~gG~~Ga~~~~sl~~~~~~~~~i~~aa~~~~pdii~l~hGGPi~~p~d~~~~l~~~~~ 717 (749)
.+.++.+.++|+|.|++|- .+..|+. ....+ +.++++.+. . + +.++-.|-|.+|+|+..+++. ++
T Consensus 152 ~~~~~~l~~~G~d~i~v~~-i~~~g~~---~g~~~----~~i~~i~~~---~--~-~pvia~GGi~~~~di~~~l~~-~g 216 (243)
T cd04731 152 VEWAKEVEELGAGEILLTS-MDRDGTK---KGYDL----ELIRAVSSA---V--N-IPVIASGGAGKPEHFVEAFEE-GG 216 (243)
T ss_pred HHHHHHHHHCCCCEEEEec-cCCCCCC---CCCCH----HHHHHHHhh---C--C-CCEEEeCCCCCHHHHHHHHHh-CC
Confidence 4677888999999999884 6666542 22333 223333222 1 3 334556779999999999976 78
Q ss_pred ccEEecCcc--cccchHHHHHHHH
Q 004491 718 VHGFYGASS--MERLPVEQAITST 739 (749)
Q Consensus 718 ~~Gf~g~Ss--~ERlP~E~ai~~~ 739 (749)
++|.+-++. ..++..+.+....
T Consensus 217 ~dgv~vg~al~~~~~~~~~~~~~~ 240 (243)
T cd04731 217 ADAALAASIFHFGEYTIAELKEYL 240 (243)
T ss_pred CCEEEEeHHHHcCCCCHHHHHHHH
Confidence 999999998 4577777665543
No 47
>TIGR00737 nifR3_yhdG putative TIM-barrel protein, nifR3 family. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.
Probab=96.59 E-value=0.0094 Score=64.30 Aligned_cols=152 Identities=21% Similarity=0.244 Sum_probs=87.1
Q ss_pred CCCceEEeeccCCCCCCHHHHHHHHHHcCccce-ecC--CcccccchhhhhhhhhcCCchHHHHHHHHHHHHc-CCcccc
Q 004491 558 KEVPVLAGVCGTDPFRRVDYFLKQLESIGFFGV-QNF--PTVGLFDGNFRQNLEETGMGYGLEVEMIDKAHKM-GLLTTP 633 (749)
Q Consensus 558 ~~tPViaGv~atDP~~~~~~~l~~lk~~Gf~GV-~Nf--PTvgliDG~fR~~LEe~G~gy~~EVemi~~A~~~-gl~T~~ 633 (749)
.+.|++.-+++.|| -++-+-.+.+++.||.|| .|+ |+--..|.-....|... .++=.|+++.-++. ++.-..
T Consensus 61 ~~~p~i~ql~g~~~-~~~~~aa~~~~~~G~d~IelN~gcP~~~~~~~~~Gs~l~~~---~~~~~ei~~~vr~~~~~pv~v 136 (319)
T TIGR00737 61 DETPISVQLFGSDP-DTMAEAAKINEELGADIIDINMGCPVPKITKKGAGSALLRD---PDLIGKIVKAVVDAVDIPVTV 136 (319)
T ss_pred ccceEEEEEeCCCH-HHHHHHHHHHHhCCCCEEEEECCCCHHHhcCCCccchHhCC---HHHHHHHHHHHHhhcCCCEEE
Confidence 36899999999999 466677778889999999 676 53111111111111110 11223444444331 221111
Q ss_pred cc--------cC-HHHHHHHHhccCcEEEeccCCCcccccccccccCHHHHHHHHHHHHHHHHHhCCCeEEEEccCCCCC
Q 004491 634 YA--------FN-EGEAVKMAKAGADIIVAHMGLTTSGSIGAKTALSLDESVDRVQAIADAAHRINPDAIVLCHGGPISS 704 (749)
Q Consensus 634 yv--------f~-~eqa~~Ma~AGaDiiv~h~GlT~gG~~Ga~~~~sl~~~~~~~~~i~~aa~~~~pdii~l~hGGPi~~ 704 (749)
.. .+ .+-++.+.++|+|.|++|-....+|.-| ... .+.+++|.++ ++ +-++.-|-|.+
T Consensus 137 Kir~g~~~~~~~~~~~a~~l~~~G~d~i~vh~r~~~~~~~~---~~~----~~~i~~i~~~---~~---ipvi~nGgI~~ 203 (319)
T TIGR00737 137 KIRIGWDDAHINAVEAARIAEDAGAQAVTLHGRTRAQGYSG---EAN----WDIIARVKQA---VR---IPVIGNGDIFS 203 (319)
T ss_pred EEEcccCCCcchHHHHHHHHHHhCCCEEEEEcccccccCCC---chh----HHHHHHHHHc---CC---CcEEEeCCCCC
Confidence 11 11 3446677899999999995433333222 111 2333333322 22 34455678999
Q ss_pred HHHHHHHHhhCCCccEEecCccc
Q 004491 705 PSEAEFILKRTKGVHGFYGASSM 727 (749)
Q Consensus 705 p~d~~~~l~~~~~~~Gf~g~Ss~ 727 (749)
++|++.+++. .+++|..-|+.+
T Consensus 204 ~~da~~~l~~-~gad~VmigR~~ 225 (319)
T TIGR00737 204 PEDAKAMLET-TGCDGVMIGRGA 225 (319)
T ss_pred HHHHHHHHHh-hCCCEEEEChhh
Confidence 9999999977 678888776553
No 48
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=96.57 E-value=0.036 Score=62.93 Aligned_cols=164 Identities=24% Similarity=0.341 Sum_probs=103.6
Q ss_pred CCCcccccHHHHHHHHHH----HhhcCCCeEEeccccc----hhhhhhhhcCCcEEEEeccccccccCCccccccccccC
Q 004491 470 ARPETLQRTQAILSKLKY----QIDKGLPIIGAGAGTG----ISAKFEEAGGVDLIVLYNSGRFRMAGRGSLAGLLPFAD 541 (749)
Q Consensus 470 ~~~~~~~~r~~il~~L~~----~i~~~~piig~gaGtG----lsAk~ae~gGaDli~~ynsGrfR~~G~~Slagllpygd 541 (749)
-+..-+.++++|++.+.. +...|+-++|++.+++ --++...++|+|+|.+-.+- | +
T Consensus 185 G~lvGiVT~~DIl~~~~~~~~~~d~~g~l~V~aav~~~~~~~~r~~~L~~aG~d~I~vd~a~-----g-----------~ 248 (450)
T TIGR01302 185 GELVGLITMKDIVKRRKFPHASKDENGRLIVGAAVGTREFDKERAEALVKAGVDVIVIDSSH-----G-----------H 248 (450)
T ss_pred CcEEEEEEhHHhhhcccCCcceEeCCCCEEEEEEecCchhHHHHHHHHHHhCCCEEEEECCC-----C-----------c
Confidence 345667777777777642 3356888999999885 35667778999999986554 1 1
Q ss_pred chHHHHHhhhhhcCCCCCCceEEeeccCCCCCCHHHHHHHHHHcCccceecCCcccccchhhhhhhhhcCCchHHHHHHH
Q 004491 542 ANAVVLEMANEVLPVVKEVPVLAGVCGTDPFRRVDYFLKQLESIGFFGVQNFPTVGLFDGNFRQNLEETGMGYGLEVEMI 621 (749)
Q Consensus 542 aN~iv~e~~~eilp~v~~tPViaGv~atDP~~~~~~~l~~lk~~Gf~GV~NfPTvgliDG~fR~~LEe~G~gy~~EVemi 621 (749)
+ .-+.++-++|-....+.||++|=
T Consensus 249 ~-~~~~~~i~~i~~~~~~~~vi~G~------------------------------------------------------- 272 (450)
T TIGR01302 249 S-IYVIDSIKEIKKTYPDLDIIAGN------------------------------------------------------- 272 (450)
T ss_pred H-hHHHHHHHHHHHhCCCCCEEEEe-------------------------------------------------------
Confidence 1 12444444443333468888864
Q ss_pred HHHHHcCCcccccccCHHHHHHHHhccCcEEEeccCCCccccccccc---ccCHHHHHHHHHHHHHHHHHhCCCeEEEEc
Q 004491 622 DKAHKMGLLTTPYAFNEGEAVKMAKAGADIIVAHMGLTTSGSIGAKT---ALSLDESVDRVQAIADAAHRINPDAIVLCH 698 (749)
Q Consensus 622 ~~A~~~gl~T~~yvf~~eqa~~Ma~AGaDiiv~h~GlT~gG~~Ga~~---~~sl~~~~~~~~~i~~aa~~~~pdii~l~h 698 (749)
|.+.++|+.+.+||||.|.+.+| .|++.... .+..- -+..+.++.+++++. ++-+++-
T Consensus 273 -------------v~t~~~a~~l~~aGad~i~vg~g---~G~~~~t~~~~~~g~p-~~~~i~~~~~~~~~~--~vpviad 333 (450)
T TIGR01302 273 -------------VATAEQAKALIDAGADGLRVGIG---PGSICTTRIVAGVGVP-QITAVYDVAEYAAQS--GIPVIAD 333 (450)
T ss_pred -------------CCCHHHHHHHHHhCCCEEEECCC---CCcCCccceecCCCcc-HHHHHHHHHHHHhhc--CCeEEEe
Confidence 88999999999999999976443 12111110 00000 112233444445443 4667777
Q ss_pred cCCCCCHHHHHHHHhhCCCccEEecCccc
Q 004491 699 GGPISSPSEAEFILKRTKGVHGFYGASSM 727 (749)
Q Consensus 699 GGPi~~p~d~~~~l~~~~~~~Gf~g~Ss~ 727 (749)
|| |.+|.|+...|.. +++-..-||.|
T Consensus 334 GG-i~~~~di~kAla~--GA~~V~~G~~~ 359 (450)
T TIGR01302 334 GG-IRYSGDIVKALAA--GADAVMLGSLL 359 (450)
T ss_pred CC-CCCHHHHHHHHHc--CCCEEEECchh
Confidence 77 9999999999854 55666666655
No 49
>PRK06843 inosine 5-monophosphate dehydrogenase; Validated
Probab=96.54 E-value=0.057 Score=60.96 Aligned_cols=83 Identities=11% Similarity=0.238 Sum_probs=52.2
Q ss_pred cccCHHHHHHHHhccCcEEEeccCCCcccccccccc-----cCHHHHHHHHHHHHHHHHHhCCCeEEEEccCCCCCHHHH
Q 004491 634 YAFNEGEAVKMAKAGADIIVAHMGLTTSGSIGAKTA-----LSLDESVDRVQAIADAAHRINPDAIVLCHGGPISSPSEA 708 (749)
Q Consensus 634 yvf~~eqa~~Ma~AGaDiiv~h~GlT~gG~~Ga~~~-----~sl~~~~~~~~~i~~aa~~~~pdii~l~hGGPi~~p~d~ 708 (749)
.|-+.++|+.+.++|||.|.+ |.+.|+.-+.+.. ..+. ++ .++.+++++. ++-|++.|| |.+|.|+
T Consensus 201 ~V~T~e~a~~l~~aGaD~I~v--G~g~Gs~c~tr~~~g~g~p~lt-ai---~~v~~~~~~~--~vpVIAdGG-I~~~~Di 271 (404)
T PRK06843 201 NIVTKEAALDLISVGADCLKV--GIGPGSICTTRIVAGVGVPQIT-AI---CDVYEVCKNT--NICIIADGG-IRFSGDV 271 (404)
T ss_pred ecCCHHHHHHHHHcCCCEEEE--CCCCCcCCcceeecCCCCChHH-HH---HHHHHHHhhc--CCeEEEeCC-CCCHHHH
Confidence 445689999999999999984 7666542222111 1111 12 2222333332 355778877 9999999
Q ss_pred HHHHhhCCCccEEecCccc
Q 004491 709 EFILKRTKGVHGFYGASSM 727 (749)
Q Consensus 709 ~~~l~~~~~~~Gf~g~Ss~ 727 (749)
...|.. ++++-.-||.|
T Consensus 272 ~KALal--GA~aVmvGs~~ 288 (404)
T PRK06843 272 VKAIAA--GADSVMIGNLF 288 (404)
T ss_pred HHHHHc--CCCEEEEccee
Confidence 999954 56777777766
No 50
>cd04738 DHOD_2_like Dihydroorotate dehydrogenase (DHOD) class 2. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences, their cellular location and their natural electron acceptor used to reoxidize the flavin group. Members of class 1 are cytosolic enzymes and multimers, while class 2 enzymes are membrane associated, monomeric and use respiratory quinones as their physiological electron acceptors.
Probab=96.53 E-value=0.088 Score=57.35 Aligned_cols=216 Identities=19% Similarity=0.176 Sum_probs=108.1
Q ss_pred CCeEEeccccchhhh---hhhhcCCcEEEEeccccccccCCcc--------ccccc-cccCchHHHHHhhhhhcCCC-CC
Q 004491 493 LPIIGAGAGTGISAK---FEEAGGVDLIVLYNSGRFRMAGRGS--------LAGLL-PFADANAVVLEMANEVLPVV-KE 559 (749)
Q Consensus 493 ~piig~gaGtGlsAk---~ae~gGaDli~~ynsGrfR~~G~~S--------lagll-pygdaN~iv~e~~~eilp~v-~~ 559 (749)
.|| |.++|.-.+++ .....|+.+|++-.-...-..|... -.|++ .+|-.|.=+-.+.+++.+.- .+
T Consensus 50 nPi-~~AsG~~~~~~~~~~~~~~G~Gavv~ktit~~~~~gn~~pr~~~~~~~~~~~n~~g~~n~g~~~~~~~l~~~~~~~ 128 (327)
T cd04738 50 NPV-GLAAGFDKNAEAIDALLALGFGFVEVGTVTPRPQPGNPKPRLFRLPEDEALINRMGFNNDGADAVAKRLKKRRPRG 128 (327)
T ss_pred CCC-EeCcCCCCCHHHHHHHHHCCCcEEEEeccCCCCCCCCCCCCEEEccCccceeecCCCCCccHHHHHHHHHHhccCC
Confidence 345 44445443332 2346788888875433321222221 11222 34555544444444443322 37
Q ss_pred CceEEeeccCCCC---CCHHHHHHHHHHcC--ccc-eecC--Ccc-cccchhhhhhhhhcCCchHHHHHHHHHHHH----
Q 004491 560 VPVLAGVCGTDPF---RRVDYFLKQLESIG--FFG-VQNF--PTV-GLFDGNFRQNLEETGMGYGLEVEMIDKAHK---- 626 (749)
Q Consensus 560 tPViaGv~atDP~---~~~~~~l~~lk~~G--f~G-V~Nf--PTv-gliDG~fR~~LEe~G~gy~~EVemi~~A~~---- 626 (749)
+||++-|+++++. ...++|.+.+++.+ ..+ ..|| |.+ +.-.++..+.++ .=++.++++-.
T Consensus 129 ~plivsi~g~~~~~~~~~~~d~~~~~~~~~~~ad~ielN~scP~~~g~~~~~~~~~~~-------~iv~av~~~~~~~~~ 201 (327)
T cd04738 129 GPLGVNIGKNKDTPLEDAVEDYVIGVRKLGPYADYLVVNVSSPNTPGLRDLQGKEALR-------ELLTAVKEERNKLGK 201 (327)
T ss_pred CeEEEEEeCCCCCcccccHHHHHHHHHHHHhhCCEEEEECCCCCCCccccccCHHHHH-------HHHHHHHHHHhhccc
Confidence 9999999998753 44677887777755 555 3566 654 222222222222 11344444332
Q ss_pred -cCCc--ccccccCHHH----HHHHHhccCcEEEeccCCC-------------cccccccccccCHHHHHHHHHHHHHHH
Q 004491 627 -MGLL--TTPYAFNEGE----AVKMAKAGADIIVAHMGLT-------------TSGSIGAKTALSLDESVDRVQAIADAA 686 (749)
Q Consensus 627 -~gl~--T~~yvf~~eq----a~~Ma~AGaDiiv~h~GlT-------------~gG~~Ga~~~~sl~~~~~~~~~i~~aa 686 (749)
.-++ ..|+ ++.++ |+++.++|||-|++|-.+- +||.-|.. ...-+.+.+.++ .
T Consensus 202 ~~Pv~vKl~~~-~~~~~~~~ia~~l~~aGad~I~~~n~~~~~~~~~~~~~~~~~gG~sG~~---~~~~~l~~v~~l---~ 274 (327)
T cd04738 202 KVPLLVKIAPD-LSDEELEDIADVALEHGVDGIIATNTTISRPGLLRSPLANETGGLSGAP---LKERSTEVLREL---Y 274 (327)
T ss_pred CCCeEEEeCCC-CCHHHHHHHHHHHHHcCCcEEEEECCcccccccccccccCCCCccCChh---hhHHHHHHHHHH---H
Confidence 1110 1123 33333 3445689999999986431 23332211 111233333444 3
Q ss_pred HHhCCCeEEEEccCCCCCHHHHHHHHhhCCCccEEecCcc
Q 004491 687 HRINPDAIVLCHGGPISSPSEAEFILKRTKGVHGFYGASS 726 (749)
Q Consensus 687 ~~~~pdii~l~hGGPi~~p~d~~~~l~~~~~~~Gf~g~Ss 726 (749)
+.+.+++-+..-|| |.+++|+..++. .+++..-=+|.
T Consensus 275 ~~~~~~ipIi~~GG-I~t~~da~e~l~--aGAd~V~vg~~ 311 (327)
T cd04738 275 KLTGGKIPIIGVGG-ISSGEDAYEKIR--AGASLVQLYTG 311 (327)
T ss_pred HHhCCCCcEEEECC-CCCHHHHHHHHH--cCCCHHhccHH
Confidence 33444555555555 999999999995 45555444443
No 51
>cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of
Probab=96.43 E-value=0.041 Score=58.08 Aligned_cols=172 Identities=17% Similarity=0.190 Sum_probs=104.0
Q ss_pred HHHHHHHHHHHhh--cCCCeEEecccc-----chhhhhhhhcCCcEEEEeccccccccCCccccccccccCchHHHHHhh
Q 004491 478 TQAILSKLKYQID--KGLPIIGAGAGT-----GISAKFEEAGGVDLIVLYNSGRFRMAGRGSLAGLLPFADANAVVLEMA 550 (749)
Q Consensus 478 r~~il~~L~~~i~--~~~piig~gaGt-----GlsAk~ae~gGaDli~~ynsGrfR~~G~~SlagllpygdaN~iv~e~~ 550 (749)
.++.++++++..+ .+.|++.--.|+ --.|+.+++.|+|.|-+--+-..-..++. +.+.-+.+.|+.
T Consensus 82 ~~~~~~~i~~~~~~~~~~pvi~si~g~~~~~~~~~a~~~~~~G~d~ielN~~cP~~~~~~~-------~~~~~~~~~eiv 154 (289)
T cd02810 82 LDVWLQDIAKAKKEFPGQPLIASVGGSSKEDYVELARKIERAGAKALELNLSCPNVGGGRQ-------LGQDPEAVANLL 154 (289)
T ss_pred HHHHHHHHHHHHhccCCCeEEEEeccCCHHHHHHHHHHHHHhCCCEEEEEcCCCCCCCCcc-------cccCHHHHHHHH
Confidence 4566777766555 378888765565 23477777889998876433222222332 334445666666
Q ss_pred hhhcCCCCCCceEEeeccCCCCCCHHHHHHHHHHcCccceecCCcccccchhhh--h-hhh--hcCC-chH---HHHHHH
Q 004491 551 NEVLPVVKEVPVLAGVCGTDPFRRVDYFLKQLESIGFFGVQNFPTVGLFDGNFR--Q-NLE--ETGM-GYG---LEVEMI 621 (749)
Q Consensus 551 ~eilp~v~~tPViaGv~atDP~~~~~~~l~~lk~~Gf~GV~NfPTvgliDG~fR--~-~LE--e~G~-gy~---~EVemi 621 (749)
++|--.+ +.||+..+.......++.++.+.+++.|..+|.=.-|..-...... . ... ..|+ |+. .-.+++
T Consensus 155 ~~vr~~~-~~pv~vKl~~~~~~~~~~~~a~~l~~~Gad~i~~~~~~~~~~~~~~~~~~~~~~~~~g~sg~~~~~~~~~~v 233 (289)
T cd02810 155 KAVKAAV-DIPLLVKLSPYFDLEDIVELAKAAERAGADGLTAINTISGRVVDLKTVGPGPKRGTGGLSGAPIRPLALRWV 233 (289)
T ss_pred HHHHHcc-CCCEEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEEcccCccceecccCccccCCCCCccCcHHHHHHHHHHH
Confidence 6555555 7899999886554456888999999999999874433221110000 0 000 1111 121 124445
Q ss_pred HHHH-----HcCCcccccccCHHHHHHHHhccCcEEEeccC
Q 004491 622 DKAH-----KMGLLTTPYAFNEGEAVKMAKAGADIIVAHMG 657 (749)
Q Consensus 622 ~~A~-----~~gl~T~~yvf~~eqa~~Ma~AGaDiiv~h~G 657 (749)
++.+ +.-+....=+++.+++.+|.++|||.+-+-=+
T Consensus 234 ~~i~~~~~~~ipiia~GGI~~~~da~~~l~~GAd~V~vg~a 274 (289)
T cd02810 234 ARLAARLQLDIPIIGVGGIDSGEDVLEMLMAGASAVQVATA 274 (289)
T ss_pred HHHHHhcCCCCCEEEECCCCCHHHHHHHHHcCccHheEcHH
Confidence 5444 34466667789999999999999998765443
No 52
>cd02801 DUS_like_FMN Dihydrouridine synthase-like (DUS-like) FMN-binding domain. Members of this family catalyze the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archaea. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. 1VHN, a putative flavin oxidoreductase, has high sequence similarity to DUS. The enzymatic mechanism of 1VHN is not known at the present.
Probab=96.41 E-value=0.051 Score=55.06 Aligned_cols=156 Identities=22% Similarity=0.254 Sum_probs=90.0
Q ss_pred CCCceEEeeccCCCCCCHHHHHHHHHHcCccce-ecC--CcccccchhhhhhhhhcCCchHHHHHHHHHHHHc-C-Cccc
Q 004491 558 KEVPVLAGVCGTDPFRRVDYFLKQLESIGFFGV-QNF--PTVGLFDGNFRQNLEETGMGYGLEVEMIDKAHKM-G-LLTT 632 (749)
Q Consensus 558 ~~tPViaGv~atDP~~~~~~~l~~lk~~Gf~GV-~Nf--PTvgliDG~fR~~LEe~G~gy~~EVemi~~A~~~-g-l~T~ 632 (749)
.+.|+++=+++.||- ++.+..+.+++.||.|| .|. |..-..++.+...|+.. .+.=.|+|+.-++. + -+++
T Consensus 53 ~~~p~~~qi~g~~~~-~~~~aa~~~~~aG~d~ieln~g~p~~~~~~~~~G~~l~~~---~~~~~eii~~v~~~~~~~v~v 128 (231)
T cd02801 53 EERPLIVQLGGSDPE-TLAEAAKIVEELGADGIDLNMGCPSPKVTKGGAGAALLKD---PELVAEIVRAVREAVPIPVTV 128 (231)
T ss_pred cCCCEEEEEcCCCHH-HHHHHHHHHHhcCCCEEEEeCCCCHHHHhCCCeeehhcCC---HHHHHHHHHHHHHhcCCCEEE
Confidence 478999999999984 77888889999999999 465 43222222222222221 12223445444432 2 1122
Q ss_pred ----ccccC---HHHHHHHHhccCcEEEeccCCCcccccccccccCHHHHHHHHHHHHHHHHHhCCCeEEEEccCCCCCH
Q 004491 633 ----PYAFN---EGEAVKMAKAGADIIVAHMGLTTSGSIGAKTALSLDESVDRVQAIADAAHRINPDAIVLCHGGPISSP 705 (749)
Q Consensus 633 ----~yvf~---~eqa~~Ma~AGaDiiv~h~GlT~gG~~Ga~~~~sl~~~~~~~~~i~~aa~~~~pdii~l~hGGPi~~p 705 (749)
.+-.+ .+-++.+.++|+|.|.+|.+....+..+ ...++. +.++.+ ..++-++. .|-|.++
T Consensus 129 k~r~~~~~~~~~~~~~~~l~~~Gvd~i~v~~~~~~~~~~~---~~~~~~----~~~i~~-----~~~ipvi~-~Ggi~~~ 195 (231)
T cd02801 129 KIRLGWDDEEETLELAKALEDAGASALTVHGRTREQRYSG---PADWDY----IAEIKE-----AVSIPVIA-NGDIFSL 195 (231)
T ss_pred EEeeccCCchHHHHHHHHHHHhCCCEEEECCCCHHHcCCC---CCCHHH----HHHHHh-----CCCCeEEE-eCCCCCH
Confidence 11111 1224556689999999997643332221 223322 233322 34554444 5669999
Q ss_pred HHHHHHHhhCCCccEEecCcccccch
Q 004491 706 SEAEFILKRTKGVHGFYGASSMERLP 731 (749)
Q Consensus 706 ~d~~~~l~~~~~~~Gf~g~Ss~ERlP 731 (749)
+|++.+++. .++++..-|..+=.=|
T Consensus 196 ~d~~~~l~~-~gad~V~igr~~l~~P 220 (231)
T cd02801 196 EDALRCLEQ-TGVDGVMIGRGALGNP 220 (231)
T ss_pred HHHHHHHHh-cCCCEEEEcHHhHhCC
Confidence 999999976 5789988776654333
No 53
>COG2513 PrpB PEP phosphonomutase and related enzymes [Carbohydrate transport and metabolism]
Probab=96.40 E-value=0.056 Score=58.44 Aligned_cols=159 Identities=23% Similarity=0.280 Sum_probs=111.9
Q ss_pred HHHHHHHHHhhcCCCeEEeccccchhhhhhhhcCCcEEEEeccccccccCCccccccccccCchHH----HHHhhhhhcC
Q 004491 480 AILSKLKYQIDKGLPIIGAGAGTGISAKFEEAGGVDLIVLYNSGRFRMAGRGSLAGLLPFADANAV----VLEMANEVLP 555 (749)
Q Consensus 480 ~il~~L~~~i~~~~piig~gaGtGlsAk~ae~gGaDli~~ynsGrfR~~G~~SlagllpygdaN~i----v~e~~~eilp 555 (749)
+--.+||+-++++.|++-.++=.++||+++++.|..-|- .+-.++|.-|-+.|.|-+ +++.+++|-.
T Consensus 5 ~~~~~fR~l~~~~~~~~~pg~~d~~sA~la~~aGF~al~---------~sg~~vA~slG~pD~~~~t~~e~~~~vrrI~~ 75 (289)
T COG2513 5 EPGAAFRALHASGDPLVLPGAWDAGSALLAERAGFKALY---------LSGAGVAASLGLPDLGITTLDEVLADARRITD 75 (289)
T ss_pred cHHHHHHHHHhCCCCEEecCCcCHHHHHHHHHcCCeEEE---------eccHHHHHhcCCCccccccHHHHHHHHHHHHh
Confidence 456789999999999999999999999999999998776 344567778888888877 4445578888
Q ss_pred CCCCCceEEeec-cCCCCCCHHHHHHHHHHcCcccee----cCCc-ccccchhhhhhhhhcCCchHHHHHHHHHHHHcC-
Q 004491 556 VVKEVPVLAGVC-GTDPFRRVDYFLKQLESIGFFGVQ----NFPT-VGLFDGNFRQNLEETGMGYGLEVEMIDKAHKMG- 628 (749)
Q Consensus 556 ~v~~tPViaGv~-atDP~~~~~~~l~~lk~~Gf~GV~----NfPT-vgliDG~fR~~LEe~G~gy~~EVemi~~A~~~g- 628 (749)
++ ++||++=+- |.--..+.-+-++++.+.|-+||+ -+|- -|.++| +.| +..+.=|+.|+.|.+.-
T Consensus 76 a~-~lPv~vD~dtGfG~~~nvartV~~~~~aG~agi~iEDq~~pk~cgh~~g---k~l----~~~~e~v~rIkAa~~a~~ 147 (289)
T COG2513 76 AV-DLPVLVDIDTGFGEALNVARTVRELEQAGAAGIHIEDQVGPKRCGHLPG---KEL----VSIDEMVDRIKAAVEARR 147 (289)
T ss_pred hc-CCceEEeccCCCCcHHHHHHHHHHHHHcCcceeeeeecccchhcCCCCC---CCc----CCHHHHHHHHHHHHHhcc
Confidence 87 699998642 111255788889999999999996 2331 122232 222 23455577777776542
Q ss_pred ---Ccccc----cccC-----HHHHHHHHhccCcEEEec
Q 004491 629 ---LLTTP----YAFN-----EGEAVKMAKAGADIIVAH 655 (749)
Q Consensus 629 ---l~T~~----yvf~-----~eqa~~Ma~AGaDiiv~h 655 (749)
++-++ +.-. .+-|++..|||||+|+++
T Consensus 148 ~~~fvi~ARTda~~~~~ld~AI~Ra~AY~eAGAD~if~~ 186 (289)
T COG2513 148 DPDFVIIARTDALLVEGLDDAIERAQAYVEAGADAIFPE 186 (289)
T ss_pred CCCeEEEeehHHHHhccHHHHHHHHHHHHHcCCcEEccc
Confidence 22221 1111 245678899999999998
No 54
>cd00331 IGPS Indole-3-glycerol phosphate synthase (IGPS); an enzyme in the tryptophan biosynthetic pathway, catalyzing the ring closure reaction of 1-(o-carboxyphenylamino)-1-deoxyribulose-5-phosphate (CdRP) to indole-3-glycerol phosphate (IGP), accompanied by the release of carbon dioxide and water. IGPS is active as a separate monomer in most organisms, but is also found fused to other enzymes as part of a bifunctional or multifunctional enzyme involved in tryptophan biosynthesis.
Probab=96.39 E-value=0.08 Score=53.79 Aligned_cols=132 Identities=19% Similarity=0.240 Sum_probs=97.2
Q ss_pred CCCceEEeeccCCCCC-------CHHHHHHHHHHcCccceecCCcccccchhhhhhhhhcCCchHHHHHHHHHHHHcCCc
Q 004491 558 KEVPVLAGVCGTDPFR-------RVDYFLKQLESIGFFGVQNFPTVGLFDGNFRQNLEETGMGYGLEVEMIDKAHKMGLL 630 (749)
Q Consensus 558 ~~tPViaGv~atDP~~-------~~~~~l~~lk~~Gf~GV~NfPTvgliDG~fR~~LEe~G~gy~~EVemi~~A~~~gl~ 630 (749)
+++||||=+....|.. ++.++-++..+.|+.++ .|---|+.|...+ ..++.|+..-+.=+.
T Consensus 9 ~~~~vIae~k~~sp~~~~~~~~~~~~~~A~~~~~~GA~~l----~v~~~~~~~~g~~--------~~~~~i~~~v~iPi~ 76 (217)
T cd00331 9 GGLGVIAEVKRASPSKGLIREDFDPVEIAKAYEKAGAAAI----SVLTEPKYFQGSL--------EDLRAVREAVSLPVL 76 (217)
T ss_pred CCceEEEEecCCCCCCCcCCCCCCHHHHHHHHHHcCCCEE----EEEeCccccCCCH--------HHHHHHHHhcCCCEE
Confidence 3689999999999985 48899999999999999 3444455555554 356666666544445
Q ss_pred ccccccCHHHHHHHHhccCcEEEeccCCCcccccccccccCHHHHHHHHHHHHHHHHHhCCCeEEEEccCCCCCHHHHHH
Q 004491 631 TTPYAFNEGEAVKMAKAGADIIVAHMGLTTSGSIGAKTALSLDESVDRVQAIADAAHRINPDAIVLCHGGPISSPSEAEF 710 (749)
Q Consensus 631 T~~yvf~~eqa~~Ma~AGaDiiv~h~GlT~gG~~Ga~~~~sl~~~~~~~~~i~~aa~~~~pdii~l~hGGPi~~p~d~~~ 710 (749)
..-|+.+++|++...++|||.++.- .+ .++. +.++++.+.++...-++++.|| ++++++.
T Consensus 77 ~~~~i~~~~~v~~~~~~Gad~v~l~--~~---------~~~~----~~~~~~~~~~~~~g~~~~v~v~-----~~~e~~~ 136 (217)
T cd00331 77 RKDFIIDPYQIYEARAAGADAVLLI--VA---------ALDD----EQLKELYELARELGMEVLVEVH-----DEEELER 136 (217)
T ss_pred ECCeecCHHHHHHHHHcCCCEEEEe--ec---------cCCH----HHHHHHHHHHHHcCCeEEEEEC-----CHHHHHH
Confidence 5567889999999999999988653 11 3333 4556777778888999999998 8899999
Q ss_pred HHhhCCCccEE
Q 004491 711 ILKRTKGVHGF 721 (749)
Q Consensus 711 ~l~~~~~~~Gf 721 (749)
..+.....-||
T Consensus 137 ~~~~g~~~i~~ 147 (217)
T cd00331 137 ALALGAKIIGI 147 (217)
T ss_pred HHHcCCCEEEE
Confidence 98664433343
No 55
>cd04739 DHOD_like Dihydroorotate dehydrogenase (DHOD) like proteins. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. This subgroup has the conserved FMN binding site, but lacks some catalytic residues and may therefore be inactive.
Probab=96.35 E-value=0.11 Score=56.76 Aligned_cols=216 Identities=16% Similarity=0.177 Sum_probs=117.3
Q ss_pred CCCeEEeccccch---hhhhhhhcCCcEEEEecccccc--ccCCcc------------ccccc-cccCchHHHHHhhhhh
Q 004491 492 GLPIIGAGAGTGI---SAKFEEAGGVDLIVLYNSGRFR--MAGRGS------------LAGLL-PFADANAVVLEMANEV 553 (749)
Q Consensus 492 ~~piig~gaGtGl---sAk~ae~gGaDli~~ynsGrfR--~~G~~S------------lagll-pygdaN~iv~e~~~ei 553 (749)
..||+-++++-+- ..+..+..|+-+|++=.-...- ..|..- -.|++ .+|-.|.=+-.+.+++
T Consensus 12 ~nPv~~ASg~~~~~~e~~~~~~~~G~Gavv~ktit~~~~~~~gn~~pr~~~~~~~~~~~~~~in~~g~~n~g~~~~~~~i 91 (325)
T cd04739 12 KNPLVASASPLSRNLDNIRRLEDAGAGAIVLPSLFEEQIEREAQELDRFLTYGSSFAEALSYFPEYGRYNLGPEEYLELI 91 (325)
T ss_pred CCCCEeCCcCCCCCHHHHHHHHHCCCcEEEecccchhhhhhcCCCCCceEeecccCcCcccccccccccCcCHHHHHHHH
Confidence 4577766555543 3456778889999875544331 222111 22333 2355555455555566
Q ss_pred cCCCC--CCceEEeeccCCCCCCHHHHHHHHHHcCcccee-cCCcccccchhhhhhhhhcCCchHHH---HHHHHHHHHc
Q 004491 554 LPVVK--EVPVLAGVCGTDPFRRVDYFLKQLESIGFFGVQ-NFPTVGLFDGNFRQNLEETGMGYGLE---VEMIDKAHKM 627 (749)
Q Consensus 554 lp~v~--~tPViaGv~atDP~~~~~~~l~~lk~~Gf~GV~-NfPTvgliDG~fR~~LEe~G~gy~~E---Vemi~~A~~~ 627 (749)
.+..+ ++||++-+++.+| -.+.++.+.+++.|+.+|. |+-..- .+ ....|++.| .|+++..++.
T Consensus 92 ~~~~~~~~~pvi~si~g~~~-~~~~~~a~~~~~~gad~iElN~s~~~-~~--------~~~~g~~~~~~~~eiv~~v~~~ 161 (325)
T cd04739 92 RRAKRAVSIPVIASLNGVSA-GGWVDYARQIEEAGADALELNIYALP-TD--------PDISGAEVEQRYLDILRAVKSA 161 (325)
T ss_pred HHHHhccCCeEEEEeCCCCH-HHHHHHHHHHHhcCCCEEEEeCCCCC-CC--------CCcccchHHHHHHHHHHHHHhc
Confidence 55432 6899999999988 6678999999999999984 552110 00 011122222 3555555543
Q ss_pred -CCc----ccccccCH-HHHHHHHhccCcEEEeccCCCcccccccccc-----------cCHHHHHHHHHHHHHHHHHhC
Q 004491 628 -GLL----TTPYAFNE-GEAVKMAKAGADIIVAHMGLTTSGSIGAKTA-----------LSLDESVDRVQAIADAAHRIN 690 (749)
Q Consensus 628 -gl~----T~~yvf~~-eqa~~Ma~AGaDiiv~h~GlT~gG~~Ga~~~-----------~sl~~~~~~~~~i~~aa~~~~ 690 (749)
++. -.|++-+. +-|+++.++|||-|++|-... +..+..++. .-...+.+.+.++ .+..
T Consensus 162 ~~iPv~vKl~p~~~~~~~~a~~l~~~Gadgi~~~nt~~-~~~id~~~~~~~~~~glSG~~~~~~al~~v~~v---~~~~- 236 (325)
T cd04739 162 VTIPVAVKLSPFFSALAHMAKQLDAAGADGLVLFNRFY-QPDIDLETLEVVPNLLLSSPAEIRLPLRWIAIL---SGRV- 236 (325)
T ss_pred cCCCEEEEcCCCccCHHHHHHHHHHcCCCeEEEEcCcC-CCCccccccceecCCCcCCccchhHHHHHHHHH---Hccc-
Confidence 111 12343333 455666799999999987642 222211111 1112233333333 2333
Q ss_pred CCeEEEEccCCCCCHHHHHHHHhhCCCccEEecCcc
Q 004491 691 PDAIVLCHGGPISSPSEAEFILKRTKGVHGFYGASS 726 (749)
Q Consensus 691 pdii~l~hGGPi~~p~d~~~~l~~~~~~~Gf~g~Ss 726 (749)
++-++. -|-|.+++|+..++. .+++.---+|.
T Consensus 237 -~ipIig-~GGI~s~~Da~e~l~--aGA~~Vqv~ta 268 (325)
T cd04739 237 -KASLAA-SGGVHDAEDVVKYLL--AGADVVMTTSA 268 (325)
T ss_pred -CCCEEE-ECCCCCHHHHHHHHH--cCCCeeEEehh
Confidence 333333 345999999999994 45555433333
No 56
>PRK07259 dihydroorotate dehydrogenase 1B; Reviewed
Probab=96.18 E-value=0.11 Score=55.44 Aligned_cols=192 Identities=20% Similarity=0.181 Sum_probs=109.8
Q ss_pred cccCCCCCCCCCCcccccHHHHHHHHHHHhhc-CCCeEEecccc-----chhhhhhhhcC-CcEEEEeccccccccCCcc
Q 004491 460 ICYSPSNFPDARPETLQRTQAILSKLKYQIDK-GLPIIGAGAGT-----GISAKFEEAGG-VDLIVLYNSGRFRMAGRGS 532 (749)
Q Consensus 460 ~~~~~~~~~~~~~~~~~~r~~il~~L~~~i~~-~~piig~gaGt-----GlsAk~ae~gG-aDli~~ynsGrfR~~G~~S 532 (749)
++..|.-|-++--..-...++.++.++...++ +.|++.--.|. .-.|+.+++.| +|.|=+ |-+ ......|
T Consensus 58 ~~~~~~~~~n~~g~~~~g~~~~~~~~~~~~~~~~~p~i~si~g~~~~~~~~~a~~~~~aG~~D~iEl-N~~-cP~~~~g- 134 (301)
T PRK07259 58 IAETPGGMLNAIGLQNPGVDAFIEEELPWLEEFDTPIIANVAGSTEEEYAEVAEKLSKAPNVDAIEL-NIS-CPNVKHG- 134 (301)
T ss_pred EEecCCceeecCCCCCcCHHHHHHHHHHHHhccCCcEEEEeccCCHHHHHHHHHHHhccCCcCEEEE-ECC-CCCCCCC-
Confidence 34444444433222222345677777776544 67877655443 33466667777 998865 221 1111111
Q ss_pred ccccccccCchHHHHHhhhhhcCCCCCCceEEeeccCCCCCCHHHHHHHHHHcCccceecCCccccc--chhhhhhhhhc
Q 004491 533 LAGLLPFADANAVVLEMANEVLPVVKEVPVLAGVCGTDPFRRVDYFLKQLESIGFFGVQNFPTVGLF--DGNFRQNLEET 610 (749)
Q Consensus 533 lagllpygdaN~iv~e~~~eilp~v~~tPViaGv~atDP~~~~~~~l~~lk~~Gf~GV~NfPTvgli--DG~fR~~LEe~ 610 (749)
| ..|+..=+.+.|..+.|--.+ +.||+.=+..+- -++..+.+.+.+.|..||.=+-|+.-. |-..++.....
T Consensus 135 --g-~~~~~~~~~~~eiv~~vr~~~-~~pv~vKl~~~~--~~~~~~a~~l~~~G~d~i~~~nt~~g~~~~~~~~~~~~~~ 208 (301)
T PRK07259 135 --G-MAFGTDPELAYEVVKAVKEVV-KVPVIVKLTPNV--TDIVEIAKAAEEAGADGLSLINTLKGMAIDIKTRKPILAN 208 (301)
T ss_pred --c-cccccCHHHHHHHHHHHHHhc-CCCEEEEcCCCc--hhHHHHHHHHHHcCCCEEEEEccccccccccccCceeecC
Confidence 1 234444467777766665555 789999887533 277889999999999998533222111 11111110011
Q ss_pred CCc----------hHHHHHHHHHHHHcCCcccccccCHHHHHHHHhccCcEEEeccCCCc
Q 004491 611 GMG----------YGLEVEMIDKAHKMGLLTTPYAFNEGEAVKMAKAGADIIVAHMGLTT 660 (749)
Q Consensus 611 G~g----------y~~EVemi~~A~~~gl~T~~yvf~~eqa~~Ma~AGaDiiv~h~GlT~ 660 (749)
+.| .-+-+..|+++.+.-+....=+.+.++|.+|.++|||.+-+-=++-.
T Consensus 209 ~~gg~sg~~~~p~~l~~v~~i~~~~~ipvi~~GGI~~~~da~~~l~aGAd~V~igr~ll~ 268 (301)
T PRK07259 209 VTGGLSGPAIKPIALRMVYQVYQAVDIPIIGMGGISSAEDAIEFIMAGASAVQVGTANFY 268 (301)
T ss_pred CcCccCCcCcccccHHHHHHHHHhCCCCEEEECCCCCHHHHHHHHHcCCCceeEcHHHhc
Confidence 111 12334445555556677778889999999999999998876555444
No 57
>PRK01060 endonuclease IV; Provisional
Probab=96.17 E-value=0.12 Score=54.02 Aligned_cols=131 Identities=16% Similarity=0.207 Sum_probs=74.1
Q ss_pred CCCCCCHHHHHHHHHHcCccceecCCcc-cccch-hhhhhhhhcCCchHHHHHHHH-HHHHcCCc----c--ccccc---
Q 004491 569 TDPFRRVDYFLKQLESIGFFGVQNFPTV-GLFDG-NFRQNLEETGMGYGLEVEMID-KAHKMGLL----T--TPYAF--- 636 (749)
Q Consensus 569 tDP~~~~~~~l~~lk~~Gf~GV~NfPTv-gliDG-~fR~~LEe~G~gy~~EVemi~-~A~~~gl~----T--~~yvf--- 636 (749)
|+|+.++++.++.++++||.||+=|+.- ..+.+ . -...+++.++ ++.+.|+- + .||..
T Consensus 8 ~~~~~~~~~~l~~~~~~G~d~vEl~~~~p~~~~~~~----------~~~~~~~~lk~~~~~~gl~~~~~~~h~~~~~nl~ 77 (281)
T PRK01060 8 VSAAGGLEGAVAEAAEIGANAFMIFTGNPQQWKRKP----------LEELNIEAFKAACEKYGISPEDILVHAPYLINLG 77 (281)
T ss_pred eecCCCHHHHHHHHHHcCCCEEEEECCCCCCCcCCC----------CCHHHHHHHHHHHHHcCCCCCceEEecceEecCC
Confidence 6788899999999999999999977431 11111 1 1223344333 23344442 2 14432
Q ss_pred CHHH---------H----HHHHhccCcEEEeccCCCcccccccccccCHHHHHHHHHHHHHHHHHhCCCeEEEEcc--CC
Q 004491 637 NEGE---------A----VKMAKAGADIIVAHMGLTTSGSIGAKTALSLDESVDRVQAIADAAHRINPDAIVLCHG--GP 701 (749)
Q Consensus 637 ~~eq---------a----~~Ma~AGaDiiv~h~GlT~gG~~Ga~~~~sl~~~~~~~~~i~~aa~~~~pdii~l~hG--GP 701 (749)
++++ . +...+-||..++.|.|..... .+-+++.++..+..+.+.+..+.|.+.+.- +.
T Consensus 78 ~~d~~~r~~s~~~~~~~i~~A~~lga~~vv~h~G~~~~~-------~~~~~~~~~~~e~l~~l~~~~~gv~l~iEn~~~~ 150 (281)
T PRK01060 78 NPNKEILEKSRDFLIQEIERCAALGAKLLVFHPGSHLGD-------IDEEDCLARIAESLNEALDKTQGVTIVLENTAGQ 150 (281)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEcCCcCCCC-------CcHHHHHHHHHHHHHHHHhcCCCCEEEEecCCCC
Confidence 1111 1 222477999999999864221 112234444444434333345567666643 32
Q ss_pred ----CCCHHHHHHHHhhCC
Q 004491 702 ----ISSPSEAEFILKRTK 716 (749)
Q Consensus 702 ----i~~p~d~~~~l~~~~ 716 (749)
+.+++++..+++.+.
T Consensus 151 ~~~~~~~~~~~~~l~~~v~ 169 (281)
T PRK01060 151 GSELGRRFEELARIIDGVE 169 (281)
T ss_pred CCcccCCHHHHHHHHHhcC
Confidence 368999999998764
No 58
>cd04742 NPD_FabD 2-Nitropropane dioxygenase (NPD)-like domain, associated with the (acyl-carrier-protein) S-malonyltransferase FabD. NPD is part of the nitroalkaneoxidizing enzyme family, that catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDPs are members of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=96.10 E-value=0.34 Score=55.13 Aligned_cols=201 Identities=17% Similarity=0.169 Sum_probs=117.3
Q ss_pred HHHHHhhcCCCeEEecccc-----chhhhhhhhcCCcEEEEeccccccccCCcccc-ccccccCchHHHHHhhhhhcCCC
Q 004491 484 KLKYQIDKGLPIIGAGAGT-----GISAKFEEAGGVDLIVLYNSGRFRMAGRGSLA-GLLPFADANAVVLEMANEVLPVV 557 (749)
Q Consensus 484 ~L~~~i~~~~piig~gaGt-----GlsAk~ae~gGaDli~~ynsGrfR~~G~~Sla-gllpygdaN~iv~e~~~eilp~v 557 (749)
.+++...-.-|||.++-+. -|.+..+++||.= ++. +.|+ -+.+.+.-++|=-.+
T Consensus 5 ~f~~~lgiryPii~gpMa~Giss~eLVaAvs~AGgLG----------------~lgag~l~----~e~l~~~I~~ir~~l 64 (418)
T cd04742 5 SFKEDYGLRYAYVAGAMARGIASAELVVAMGKAGMLG----------------FFGAGGLP----LDEVEQAIERIQAAL 64 (418)
T ss_pred HHHHHhCCCccEECCcccCCCCCHHHHHHHHhCCCee----------------eecCCCCC----HHHHHHHHHHHHHhc
Confidence 3555566678999866654 3555555555432 222 2222 355555555542222
Q ss_pred C-CCceEEeecc----CCCCCCHHHHHHHHHHcCccceecC----CcccccchhhhhhhhhcCCch--------------
Q 004491 558 K-EVPVLAGVCG----TDPFRRVDYFLKQLESIGFFGVQNF----PTVGLFDGNFRQNLEETGMGY-------------- 614 (749)
Q Consensus 558 ~-~tPViaGv~a----tDP~~~~~~~l~~lk~~Gf~GV~Nf----PTvgliDG~fR~~LEe~G~gy-------------- 614 (749)
. +.| +|||= .||- ..+..++-+.+.|..=|.-. ||-.+. .+|. .|+-+
T Consensus 65 t~~~P--fGVNL~~~~~~~~-~e~~~v~l~le~gV~~ve~sa~~~~~p~~~--~~r~----~G~~~~~~g~~~~~~~Via 135 (418)
T cd04742 65 GNGEP--YGVNLIHSPDEPE-LEEGLVDLFLRHGVRVVEASAFMQLTPALV--RYRA----KGLRRDADGRVQIANRIIA 135 (418)
T ss_pred cCCCC--eEEeeecCCCCch-hHHHHHHHHHHcCCCEEEeccccCCCcchh--hHHh----cCCcccccccccccceEEE
Confidence 2 456 55542 2332 24567777787777422211 222221 3332 33322
Q ss_pred ---HHHH----------HHHHHHHHcCCcccccccCHHHHHHHHhcc-CcEEEeccCCCcccccccccccCHHHHHHHHH
Q 004491 615 ---GLEV----------EMIDKAHKMGLLTTPYAFNEGEAVKMAKAG-ADIIVAHMGLTTSGSIGAKTALSLDESVDRVQ 680 (749)
Q Consensus 615 ---~~EV----------emi~~A~~~gl~T~~yvf~~eqa~~Ma~AG-aDiiv~h~GlT~gG~~Ga~~~~sl~~~~~~~~ 680 (749)
.-|| ++|++.++.|.+ |++||+...++| ||.||+. .-.||..|..... .-...+.
T Consensus 136 kVsr~evAs~~f~ppp~~~v~~L~~~G~i------t~~eA~~A~~~g~aD~Ivvq--~EAGGH~g~~~~~---~Llp~v~ 204 (418)
T cd04742 136 KVSRPEVAEAFMSPAPERILKKLLAEGKI------TEEQAELARRVPVADDITVE--ADSGGHTDNRPLS---VLLPTII 204 (418)
T ss_pred ecCChhhhhhhcCCCCHHHHHHHHHcCCC------CHHHHHHHHhCCCCCEEEEc--ccCCCCCCCccHH---hHHHHHH
Confidence 2233 578999999998 899999999999 6999998 4788887654322 3333334
Q ss_pred HHHHHHHH---hCCCeEEEEccCCCCCHHHHHHHHhhCCCccEEecCccc
Q 004491 681 AIADAAHR---INPDAIVLCHGGPISSPSEAEFILKRTKGVHGFYGASSM 727 (749)
Q Consensus 681 ~i~~aa~~---~~pdii~l~hGGPi~~p~d~~~~l~~~~~~~Gf~g~Ss~ 727 (749)
++.++... ...++-|.+ .|-|.+|+++...+.- +.+|-.-||-+
T Consensus 205 ~l~d~v~~~~~~~~~ipViA-AGGI~tg~~vaAA~al--GAd~V~~GT~f 251 (418)
T cd04742 205 RLRDELAARYGYRRPIRVGA-AGGIGTPEAAAAAFAL--GADFIVTGSIN 251 (418)
T ss_pred HHHHHHhhccccCCCceEEE-ECCCCCHHHHHHHHHc--CCcEEeeccHH
Confidence 44433321 123444544 4559999999999954 67898888865
No 59
>PF13714 PEP_mutase: Phosphoenolpyruvate phosphomutase; PDB: 1ZLP_A 3EOO_C 1UJQ_D 1O5Q_A 2DUA_A 2HJP_A 2HRW_A 2QIW_A 3KZ2_B 3IH1_B ....
Probab=96.06 E-value=0.16 Score=53.52 Aligned_cols=152 Identities=24% Similarity=0.321 Sum_probs=91.0
Q ss_pred HHHHhhc-CCCeEEeccccchhhhhhhhcCCcEEEEeccccccccCCccccccccccCchHHHHHhhhhhcCCCCCCceE
Q 004491 485 LKYQIDK-GLPIIGAGAGTGISAKFEEAGGVDLIVLYNSGRFRMAGRGSLAGLLPFADANAVVLEMANEVLPVVKEVPVL 563 (749)
Q Consensus 485 L~~~i~~-~~piig~gaGtGlsAk~ae~gGaDli~~ynsGrfR~~G~~SlagllpygdaN~iv~e~~~eilp~v~~tPVi 563 (749)
||+ +.+ ++|++-.++--++|||.+|+.|.|-|.+=..|.=-..|.+-. ++|++.. +++..++|...+ ++||+
T Consensus 1 fr~-L~~~~~~l~~p~~~D~~SAr~~e~~Gf~ai~~sg~~~a~s~G~pD~-~~lt~~e----~~~~~~~I~~~~-~iPv~ 73 (238)
T PF13714_consen 1 FRQ-LHEPGKPLVLPNVWDALSARLAERAGFDAIATSGAGVAASLGYPDG-GLLTLTE----MLAAVRRIARAV-SIPVI 73 (238)
T ss_dssp HHH-HHHSSSSEEEEEESSHHHHHHHHHTT-SEEEEHHHHHHHHTTS-SS-S-S-HHH----HHHHHHHHHHHS-SSEEE
T ss_pred Chh-hhcCCCcEEeCCCcCHHHHHHHHHcCCCEEEechHHHHHHcCCCCC-CCCCHHH----HHHHHHHHHhhh-cCcEE
Confidence 466 554 599999999999999999999999976543333333343333 4444432 344556777777 69999
Q ss_pred Eeec---cCCCCCCHHHHHHHHHHcCcccee------cCCcccccchhhhhhhhhcCCchHHHHHHHHHHH----HcCCc
Q 004491 564 AGVC---GTDPFRRVDYFLKQLESIGFFGVQ------NFPTVGLFDGNFRQNLEETGMGYGLEVEMIDKAH----KMGLL 630 (749)
Q Consensus 564 aGv~---atDP~~~~~~~l~~lk~~Gf~GV~------NfPTvgliDG~fR~~LEe~G~gy~~EVemi~~A~----~~gl~ 630 (749)
+=+- +.|| .++.+-.+++.+.|.+||+ |++.-.++ ..+.=++-|+.|+ +.||+
T Consensus 74 vD~d~GyG~~~-~~v~~tv~~~~~aG~agi~IEDq~~~~~~~~l~-------------~~ee~~~kI~Aa~~a~~~~~~~ 139 (238)
T PF13714_consen 74 VDADTGYGNDP-ENVARTVRELERAGAAGINIEDQRCGHGGKQLV-------------SPEEMVAKIRAAVDARRDPDFV 139 (238)
T ss_dssp EE-TTTSSSSH-HHHHHHHHHHHHCT-SEEEEESBSTTTSTT-B---------------HHHHHHHHHHHHHHHSSTTSE
T ss_pred EEcccccCchh-HHHHHHHHHHHHcCCcEEEeeccccCCCCCcee-------------CHHHHHHHHHHHHHhccCCeEE
Confidence 8542 2223 3678889999999999995 22222222 2233344455543 35665
Q ss_pred ccc----cc---cCHH----HHHHHHhccCcEEEeccC
Q 004491 631 TTP----YA---FNEG----EAVKMAKAGADIIVAHMG 657 (749)
Q Consensus 631 T~~----yv---f~~e----qa~~Ma~AGaDiiv~h~G 657 (749)
=++ |. ...+ -+++-.+||||+|.+|.-
T Consensus 140 I~ARTDa~~~~~~~~deaI~R~~aY~eAGAD~ifi~~~ 177 (238)
T PF13714_consen 140 IIARTDAFLRAEEGLDEAIERAKAYAEAGADMIFIPGL 177 (238)
T ss_dssp EEEEECHHCHHHHHHHHHHHHHHHHHHTT-SEEEETTS
T ss_pred EEEeccccccCCCCHHHHHHHHHHHHHcCCCEEEeCCC
Confidence 433 32 2223 356678999999999854
No 60
>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.
Probab=96.04 E-value=0.065 Score=61.60 Aligned_cols=148 Identities=24% Similarity=0.311 Sum_probs=102.2
Q ss_pred CcccccHHHHHHHHHHH---hhcCCCeEEeccccc----hhhhhhhhcCCcEEEEeccccccccCCccccccccccCchH
Q 004491 472 PETLQRTQAILSKLKYQ---IDKGLPIIGAGAGTG----ISAKFEEAGGVDLIVLYNSGRFRMAGRGSLAGLLPFADANA 544 (749)
Q Consensus 472 ~~~~~~r~~il~~L~~~---i~~~~piig~gaGtG----lsAk~ae~gGaDli~~ynsGrfR~~G~~SlagllpygdaN~ 544 (749)
+--+.++++|++..... ..+|...+|+.+|+. --++.-.+.|+|.|++-.+- |+ +.
T Consensus 189 LvGIIT~~DLl~~~~~~~~~d~~grl~Vgaav~~~~~~~~ra~~Lv~aGVd~i~~D~a~-----g~------------~~ 251 (475)
T TIGR01303 189 LAGILTRTGALRATIYTPATDAAGRLRIGAAVGINGDVGGKAKALLDAGVDVLVIDTAH-----GH------------QV 251 (475)
T ss_pred EEEEEEHHHHHHHHhCCchhhhccCceehheeeeCccHHHHHHHHHHhCCCEEEEeCCC-----CC------------cH
Confidence 44567788887765543 335688889888874 24455556899999986552 22 26
Q ss_pred HHHHhhhhhcCCCCCCceEEeeccCCCCCCHHHHHHHHHHcCccceecCCcccccchhhhhhhhhcCCchHHHHHHHHHH
Q 004491 545 VVLEMANEVLPVVKEVPVLAGVCGTDPFRRVDYFLKQLESIGFFGVQNFPTVGLFDGNFRQNLEETGMGYGLEVEMIDKA 624 (749)
Q Consensus 545 iv~e~~~eilp~v~~tPViaGv~atDP~~~~~~~l~~lk~~Gf~GV~NfPTvgliDG~fR~~LEe~G~gy~~EVemi~~A 624 (749)
-+.++-++|=....++|||+|-
T Consensus 252 ~~~~~i~~i~~~~~~~~vi~g~---------------------------------------------------------- 273 (475)
T TIGR01303 252 KMISAIKAVRALDLGVPIVAGN---------------------------------------------------------- 273 (475)
T ss_pred HHHHHHHHHHHHCCCCeEEEec----------------------------------------------------------
Confidence 6777877776666678999965
Q ss_pred HHcCCcccccccCHHHHHHHHhccCcEEEeccC----CCcccccccc--cccCHHHHHHHHHHHHHHHHHhCCCeEEEEc
Q 004491 625 HKMGLLTTPYAFNEGEAVKMAKAGADIIVAHMG----LTTSGSIGAK--TALSLDESVDRVQAIADAAHRINPDAIVLCH 698 (749)
Q Consensus 625 ~~~gl~T~~yvf~~eqa~~Ma~AGaDiiv~h~G----lT~gG~~Ga~--~~~sl~~~~~~~~~i~~aa~~~~pdii~l~h 698 (749)
+-+.|+++++.+||||.|=+-+| .|+.+..|+. +..++-+|++. +++. ++-|++.
T Consensus 274 ----------~~t~~~~~~l~~~G~d~i~vg~g~Gs~~ttr~~~~~g~~~~~a~~~~~~~-------~~~~--~~~viad 334 (475)
T TIGR01303 274 ----------VVSAEGVRDLLEAGANIIKVGVGPGAMCTTRMMTGVGRPQFSAVLECAAE-------ARKL--GGHVWAD 334 (475)
T ss_pred ----------cCCHHHHHHHHHhCCCEEEECCcCCccccCccccCCCCchHHHHHHHHHH-------HHHc--CCcEEEe
Confidence 78899999999999999987776 5666665542 22223333322 2333 5678888
Q ss_pred cCCCCCHHHHHHHHhh
Q 004491 699 GGPISSPSEAEFILKR 714 (749)
Q Consensus 699 GGPi~~p~d~~~~l~~ 714 (749)
|| |.+|.|+..-|.-
T Consensus 335 Gg-i~~~~di~kala~ 349 (475)
T TIGR01303 335 GG-VRHPRDVALALAA 349 (475)
T ss_pred CC-CCCHHHHHHHHHc
Confidence 76 9999999998853
No 61
>cd04727 pdxS PdxS is a subunit of the pyridoxal 5'-phosphate (PLP) synthase, an important enzyme in deoxyxylulose 5-phosphate (DXP)-independent pathway for de novo biosynthesis of PLP, present in some eubacteria, in archaea, fungi, plants, plasmodia, and some metazoa. Together with PdxT, PdxS forms the PLP synthase, a heteromeric glutamine amidotransferase (GATase), whereby PdxT produces ammonia from glutamine and PdxS combines ammonia with five- and three-carbon phosphosugars to form PLP. PLP is the biologically active form of vitamin B6, an essential cofactor in many biochemical processes. PdxS subunits form two hexameric rings.
Probab=96.00 E-value=0.26 Score=53.38 Aligned_cols=177 Identities=22% Similarity=0.251 Sum_probs=109.8
Q ss_pred chhhhhhhhcCCcEEEEec---------cccccccCCccccccccccCchHHHHHhhhhhcCCCCCCceEEeeccCCCCC
Q 004491 503 GISAKFEEAGGVDLIVLYN---------SGRFRMAGRGSLAGLLPFADANAVVLEMANEVLPVVKEVPVLAGVCGTDPFR 573 (749)
Q Consensus 503 GlsAk~ae~gGaDli~~yn---------sGrfR~~G~~SlagllpygdaN~iv~e~~~eilp~v~~tPViaGv~atDP~~ 573 (749)
---||.||.+||=-++++. .|--|+++ .++-++|...| ++|||+=+- +
T Consensus 18 ~~qa~~ae~aga~~v~~~~~~~~~~~~~~~v~R~~~-----------------~~~I~~Ik~~V-~iPVIGi~K-----~ 74 (283)
T cd04727 18 AEQARIAEEAGAVAVMALERVPADIRAAGGVARMAD-----------------PKMIKEIMDAV-SIPVMAKVR-----I 74 (283)
T ss_pred HHHHHHHHHcCceEEeeeccCchhhhhcCCeeecCC-----------------HHHHHHHHHhC-CCCeEEeee-----h
Confidence 3458999999999998863 23334432 35567888888 799996443 2
Q ss_pred CHHHHHHHHHHcCccceecCCcccccchhhhhhhhhcCCchHHHHHHHHHHHHc-CCcccccccCHHHHHHHHhccCcEE
Q 004491 574 RVDYFLKQLESIGFFGVQNFPTVGLFDGNFRQNLEETGMGYGLEVEMIDKAHKM-GLLTTPYAFNEGEAVKMAKAGADII 652 (749)
Q Consensus 574 ~~~~~l~~lk~~Gf~GV~NfPTvgliDG~fR~~LEe~G~gy~~EVemi~~A~~~-gl~T~~yvf~~eqa~~Ma~AGaDii 652 (749)
..-.-.+.|.+.|.. +||.+.|..- -+ ++++.-|++ +.+-++=+-|.+||..-.++|+|+|
T Consensus 75 ~~~~Ea~~L~eaGvD---------iIDaT~r~rP------~~---~~~~~iK~~~~~l~MAD~stleEal~a~~~Gad~I 136 (283)
T cd04727 75 GHFVEAQILEALGVD---------MIDESEVLTP------AD---EEHHIDKHKFKVPFVCGARNLGEALRRISEGAAMI 136 (283)
T ss_pred hHHHHHHHHHHcCCC---------EEeccCCCCc------HH---HHHHHHHHHcCCcEEccCCCHHHHHHHHHCCCCEE
Confidence 223344566677654 3466555433 12 345555554 7777888889999999999999999
Q ss_pred EeccCCCccc-----------------ccccccccCH-------HHHHHHHHHHHHHHHHhCCCeEE-EEccCCCCCHHH
Q 004491 653 VAHMGLTTSG-----------------SIGAKTALSL-------DESVDRVQAIADAAHRINPDAIV-LCHGGPISSPSE 707 (749)
Q Consensus 653 v~h~GlT~gG-----------------~~Ga~~~~sl-------~~~~~~~~~i~~aa~~~~pdii~-l~hGGPi~~p~d 707 (749)
=.++---||. ..|. |..|+ +--.+.+.++.+ ..+ =.++ ++-|| |.+|++
T Consensus 137 ~TTl~gyT~~~~~~~~~~~~i~~~i~~~~gy-t~~t~~~~~~~~~~d~elLk~l~~---~~~-iPVV~iAeGG-I~Tpen 210 (283)
T cd04727 137 RTKGEAGTGNVVEAVRHMRAVNGEIRKLQSM-SEEELYAVAKEIQAPYELVKETAK---LGR-LPVVNFAAGG-VATPAD 210 (283)
T ss_pred EecCCCCCCcHHHHHHHHHHHHHHHHHHhCC-CHHHHHhhhcccCCCHHHHHHHHH---hcC-CCeEEEEeCC-CCCHHH
Confidence 8877322222 0000 00011 111223333332 222 2244 46665 999999
Q ss_pred HHHHHhhCCCccEEecCcccc
Q 004491 708 AEFILKRTKGVHGFYGASSME 728 (749)
Q Consensus 708 ~~~~l~~~~~~~Gf~g~Ss~E 728 (749)
+..+++ .+++|+.-+|.+=
T Consensus 211 a~~v~e--~GAdgVaVGSAI~ 229 (283)
T cd04727 211 AALMMQ--LGADGVFVGSGIF 229 (283)
T ss_pred HHHHHH--cCCCEEEEcHHhh
Confidence 999995 4899999999883
No 62
>PRK05581 ribulose-phosphate 3-epimerase; Validated
Probab=95.98 E-value=0.44 Score=48.07 Aligned_cols=192 Identities=14% Similarity=0.184 Sum_probs=106.6
Q ss_pred hhhhhhcCCcEEEEeccccccccCCccccccccccCchHHHHHhhhhhcCCCCCCceEEeeccCCCCCCHHHHHHHHHHc
Q 004491 506 AKFEEAGGVDLIVLYNSGRFRMAGRGSLAGLLPFADANAVVLEMANEVLPVVKEVPVLAGVCGTDPFRRVDYFLKQLESI 585 (749)
Q Consensus 506 Ak~ae~gGaDli~~ynsGrfR~~G~~SlagllpygdaN~iv~e~~~eilp~v~~tPViaGv~atDP~~~~~~~l~~lk~~ 585 (749)
++.+.++|+|+|=+ |++. ++ |...-.+.++.++++...++ .|+-+.+...| ..+|++.+++.
T Consensus 22 ~~~~~~~G~~~i~l------~~~d-~~------~~~~~~~~~~~~~~i~~~~~-~~~~v~l~v~d----~~~~i~~~~~~ 83 (220)
T PRK05581 22 VKAVEAAGADWIHV------DVMD-GH------FVPNLTIGPPVVEAIRKVTK-LPLDVHLMVEN----PDRYVPDFAKA 83 (220)
T ss_pred HHHHHHcCCCEEEE------eCcc-CC------cCCCcCcCHHHHHHHHhcCC-CcEEEEeeeCC----HHHHHHHHHHc
Confidence 34566777777764 3332 11 11111234566666655554 56667777775 46678888999
Q ss_pred CccceecCCcccccchhhhhhhhhcCCchHHHHHHHHHHHHcCCccccccc--C-HHHHHHHHhccCcEEEeccCCCccc
Q 004491 586 GFFGVQNFPTVGLFDGNFRQNLEETGMGYGLEVEMIDKAHKMGLLTTPYAF--N-EGEAVKMAKAGADIIVAHMGLTTSG 662 (749)
Q Consensus 586 Gf~GV~NfPTvgliDG~fR~~LEe~G~gy~~EVemi~~A~~~gl~T~~yvf--~-~eqa~~Ma~AGaDiiv~h~GlT~gG 662 (749)
|..||+ +.++. .+...+.++.+++.|+.....+- + .+..++. ..++|.|.. +.+..|+
T Consensus 84 g~d~v~------vh~~~-----------~~~~~~~~~~~~~~~~~~g~~~~~~t~~e~~~~~-~~~~d~i~~-~~~~~g~ 144 (220)
T PRK05581 84 GADIIT------FHVEA-----------SEHIHRLLQLIKSAGIKAGLVLNPATPLEPLEDV-LDLLDLVLL-MSVNPGF 144 (220)
T ss_pred CCCEEE------Eeecc-----------chhHHHHHHHHHHcCCEEEEEECCCCCHHHHHHH-HhhCCEEEE-EEECCCC
Confidence 999974 22221 23335568999999987666552 3 3334443 345884433 3322221
Q ss_pred ccccccccCHHHHHHHHHHHHHHHHHhCCCeEEEEccCCCCCHHHHHHHHhhCCCccEEecCcccccchHHHHHHHHHHh
Q 004491 663 SIGAKTALSLDESVDRVQAIADAAHRINPDAIVLCHGGPISSPSEAEFILKRTKGVHGFYGASSMERLPVEQAITSTMRQ 742 (749)
Q Consensus 663 ~~Ga~~~~sl~~~~~~~~~i~~aa~~~~pdii~l~hGGPi~~p~d~~~~l~~~~~~~Gf~g~Ss~ERlP~E~ai~~~~~~ 742 (749)
+ |. ....+..+.++++.+.....+.++.+.+-|| |+ |+++..+.+ .+++|++-+|++=+=| -..++.++
T Consensus 145 t-g~---~~~~~~~~~i~~~~~~~~~~~~~~~i~v~GG-I~-~~nv~~l~~--~GaD~vvvgSai~~~~---d~~~~~~~ 213 (220)
T PRK05581 145 G-GQ---KFIPEVLEKIRELRKLIDERGLDILIEVDGG-IN-ADNIKECAE--AGADVFVAGSAVFGAP---DYKEAIDS 213 (220)
T ss_pred C-cc---cccHHHHHHHHHHHHHHHhcCCCceEEEECC-CC-HHHHHHHHH--cCCCEEEEChhhhCCC---CHHHHHHH
Confidence 1 11 2223445555655544333232344445555 55 489999885 5789999999985432 13344555
Q ss_pred hcc
Q 004491 743 YKS 745 (749)
Q Consensus 743 FK~ 745 (749)
|++
T Consensus 214 ~~~ 216 (220)
T PRK05581 214 LRA 216 (220)
T ss_pred HHH
Confidence 554
No 63
>TIGR01182 eda Entner-Doudoroff aldolase. 2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida
Probab=95.95 E-value=0.2 Score=51.87 Aligned_cols=106 Identities=16% Similarity=0.109 Sum_probs=84.5
Q ss_pred HHHHHHHHcCCcccccccCHHHHHHHHhccCcEEEeccCCCcccccccccccCHHHHHHHHHHHHHHHHHhCCCeEEEEc
Q 004491 619 EMIDKAHKMGLLTTPYAFNEGEAVKMAKAGADIIVAHMGLTTSGSIGAKTALSLDESVDRVQAIADAAHRINPDAIVLCH 698 (749)
Q Consensus 619 emi~~A~~~gl~T~~yvf~~eqa~~Ma~AGaDiiv~h~GlT~gG~~Ga~~~~sl~~~~~~~~~i~~aa~~~~pdii~l~h 698 (749)
|+++.|++.|+..+|=++++.|+.+..++|+|++=....-..||. ...++-+..=|++-++--
T Consensus 92 ~v~~~~~~~~i~~iPG~~TptEi~~A~~~Ga~~vKlFPA~~~GG~-----------------~yikal~~plp~i~~~pt 154 (204)
T TIGR01182 92 ELAKHAQDHGIPIIPGVATPSEIMLALELGITALKLFPAEVSGGV-----------------KMLKALAGPFPQVRFCPT 154 (204)
T ss_pred HHHHHHHHcCCcEECCCCCHHHHHHHHHCCCCEEEECCchhcCCH-----------------HHHHHHhccCCCCcEEec
Confidence 899999999999999999999999999999999998886444443 234555667789999999
Q ss_pred cCCCCCHHHHHHHHhhCCCccEEecCcccccc-hHH----HHHHHHHHhhcc
Q 004491 699 GGPISSPSEAEFILKRTKGVHGFYGASSMERL-PVE----QAITSTMRQYKS 745 (749)
Q Consensus 699 GGPi~~p~d~~~~l~~~~~~~Gf~g~Ss~ERl-P~E----~ai~~~~~~FK~ 745 (749)
|| -+++++...++. ++.++-++|.+=+- .++ ..|++..++|..
T Consensus 155 GG--V~~~N~~~~l~a--Ga~~vg~Gs~L~~~~~~~~~~~~~i~~~a~~~~~ 202 (204)
T TIGR01182 155 GG--INLANVRDYLAA--PNVACGGGSWLVPKDLIAAGDWDEITRLAREALE 202 (204)
T ss_pred CC--CCHHHHHHHHhC--CCEEEEEChhhcCchhhccccHHHHHHHHHHHHh
Confidence 99 788999999965 56899999998321 122 567777777754
No 64
>PLN02424 ketopantoate hydroxymethyltransferase
Probab=95.94 E-value=0.026 Score=62.01 Aligned_cols=125 Identities=25% Similarity=0.340 Sum_probs=84.8
Q ss_pred HHHHHHHhhcCCCeEEeccccchhhhhhhhcCCcEEEEeccccccccCCccccccccccCchHHHHHhh-hh---hcCCC
Q 004491 482 LSKLKYQIDKGLPIIGAGAGTGISAKFEEAGGVDLIVLYNSGRFRMAGRGSLAGLLPFADANAVVLEMA-NE---VLPVV 557 (749)
Q Consensus 482 l~~L~~~i~~~~piig~gaGtGlsAk~ae~gGaDli~~ynsGrfR~~G~~SlagllpygdaN~iv~e~~-~e---ilp~v 557 (749)
+..|++.=++|+||+-.=+=-=.||+++++.|+|+|++ |-+...-.|-|.|-+.+.+|.- .+ |.--+
T Consensus 24 i~~l~~~k~~g~kivmlTAyD~~sA~i~d~aGvD~ILV---------GDSlgmv~lG~~~T~~Vtld~mi~H~~aV~Rga 94 (332)
T PLN02424 24 LRTLRQKYRRGEPITMVTAYDYPSAVHVDSAGIDVCLV---------GDSAAMVVHGHDTTLPITLDEMLVHCRAVARGA 94 (332)
T ss_pred HHHHHHHHhCCCcEEEEecCCHHHHHHHHHcCCCEEEE---------CCcHHHHhcCCCCCCCcCHHHHHHHHHHHhccC
Confidence 55577766779999999999999999999999999995 4444556677888888888765 33 33333
Q ss_pred CCCceEEeeccCC-CCC----CHHHHH---HHH-HHcCccceecCCcccccchhhhhhhhhcCCchHHHHHHHHHHHHcC
Q 004491 558 KEVPVLAGVCGTD-PFR----RVDYFL---KQL-ESIGFFGVQNFPTVGLFDGNFRQNLEETGMGYGLEVEMIDKAHKMG 628 (749)
Q Consensus 558 ~~tPViaGv~atD-P~~----~~~~~l---~~l-k~~Gf~GV~NfPTvgliDG~fR~~LEe~G~gy~~EVemi~~A~~~g 628 (749)
+ .|++.+ | ||. +.++.+ .+| ++.|-.+|. ||.-.
T Consensus 95 ~-~a~vVa----DmPfgSY~~s~e~av~nA~rl~~eaGa~aVK---------------lEGg~----------------- 137 (332)
T PLN02424 95 N-RPLLVG----DLPFGSYESSTDQAVESAVRMLKEGGMDAVK---------------LEGGS----------------- 137 (332)
T ss_pred C-CCEEEe----CCCCCCCCCCHHHHHHHHHHHHHHhCCcEEE---------------ECCCc-----------------
Confidence 2 344432 3 443 344442 334 678888874 33211
Q ss_pred CcccccccCHHHHHHHHhccCcEEEeccCCC
Q 004491 629 LLTTPYAFNEGEAVKMAKAGADIIVAHMGLT 659 (749)
Q Consensus 629 l~T~~yvf~~eqa~~Ma~AGaDiiv~h~GlT 659 (749)
+...+-.++|+++|.. +|.|+|||
T Consensus 138 ------~~~~~~I~~l~~~GIP-V~gHiGLt 161 (332)
T PLN02424 138 ------PSRVTAAKAIVEAGIA-VMGHVGLT 161 (332)
T ss_pred ------HHHHHHHHHHHHcCCC-EEEeeccc
Confidence 1113556788889988 68999999
No 65
>PRK00043 thiE thiamine-phosphate pyrophosphorylase; Reviewed
Probab=95.84 E-value=0.29 Score=48.84 Aligned_cols=163 Identities=23% Similarity=0.246 Sum_probs=96.6
Q ss_pred hhhhcCCcEEEEeccccccccCCccccccccccCchHHHHHhhhhhcCCC--CCCceEEeeccCCCCCCHHHHHHHHHHc
Q 004491 508 FEEAGGVDLIVLYNSGRFRMAGRGSLAGLLPFADANAVVLEMANEVLPVV--KEVPVLAGVCGTDPFRRVDYFLKQLESI 585 (749)
Q Consensus 508 ~ae~gGaDli~~ynsGrfR~~G~~SlagllpygdaN~iv~e~~~eilp~v--~~tPViaGv~atDP~~~~~~~l~~lk~~ 585 (749)
.+.++|+|+|. ||+.. .+ .....+..+++.... .++|++. ..+++...+.
T Consensus 29 ~~~~~gv~~v~------lr~~~----------~~-~~~~~~~~~~~~~~~~~~~~~l~~-----------~~~~~~a~~~ 80 (212)
T PRK00043 29 AALEGGVTLVQ------LREKG----------LD-TRERLELARALKELCRRYGVPLIV-----------NDRVDLALAV 80 (212)
T ss_pred HHHhcCCCEEE------EeCCC----------CC-HHHHHHHHHHHHHHHHHhCCeEEE-----------eChHHHHHHc
Confidence 35667999984 56543 12 333344555544332 2567654 2478889999
Q ss_pred CccceecCCcccccchhhhhhhhhcCCchHHHHHHHHHHHHcCCcccccccCHHHHHHHHhccCcEEEeccCCCcccccc
Q 004491 586 GFFGVQNFPTVGLFDGNFRQNLEETGMGYGLEVEMIDKAHKMGLLTTPYAFNEGEAVKMAKAGADIIVAHMGLTTSGSIG 665 (749)
Q Consensus 586 Gf~GV~NfPTvgliDG~fR~~LEe~G~gy~~EVemi~~A~~~gl~T~~yvf~~eqa~~Ma~AGaDiiv~h~GlT~gG~~G 665 (749)
|..||. +|.-. .++..++..++.+..--..+-|.+|+++-.+.|||.|+.+.-..++-.-+
T Consensus 81 gad~vh-~~~~~------------------~~~~~~~~~~~~~~~~g~~~~t~~e~~~a~~~gaD~v~~~~~~~~~~~~~ 141 (212)
T PRK00043 81 GADGVH-LGQDD------------------LPVADARALLGPDAIIGLSTHTLEEAAAALAAGADYVGVGPIFPTPTKKD 141 (212)
T ss_pred CCCEEe-cCccc------------------CCHHHHHHHcCCCCEEEEeCCCHHHHHHHhHcCCCEEEECCccCCCCCCC
Confidence 998863 34221 11334444445555444456688999998999999998873322221111
Q ss_pred cccccCHHHHHHHHHHHHHHHHHhCCCeEEEEccCCCCCHHHHHHHHhhCCCccEEecCccccc
Q 004491 666 AKTALSLDESVDRVQAIADAAHRINPDAIVLCHGGPISSPSEAEFILKRTKGVHGFYGASSMER 729 (749)
Q Consensus 666 a~~~~sl~~~~~~~~~i~~aa~~~~pdii~l~hGGPi~~p~d~~~~l~~~~~~~Gf~g~Ss~ER 729 (749)
...... .+.++++.+. .+++-|++-||- +++++..+++ .+++|+..+|++=+
T Consensus 142 ~~~~~g----~~~~~~~~~~----~~~~~v~a~GGI--~~~~i~~~~~--~Ga~gv~~gs~i~~ 193 (212)
T PRK00043 142 AKAPQG----LEGLREIRAA----VGDIPIVAIGGI--TPENAPEVLE--AGADGVAVVSAITG 193 (212)
T ss_pred CCCCCC----HHHHHHHHHh----cCCCCEEEECCc--CHHHHHHHHH--cCCCEEEEeHHhhc
Confidence 111111 2333444322 234677777885 7999999885 47899999998843
No 66
>PF00218 IGPS: Indole-3-glycerol phosphate synthase; InterPro: IPR013798 Indole-3-glycerol phosphate synthase (4.1.1.48 from EC) (IGPS) catalyses the fourth step in the biosynthesis of tryptophan, the ring closure of 1-(2-carboxy-phenylamino)-1-deoxyribulose into indol-3-glycerol-phosphate. In some bacteria, IGPS is a single chain enzyme. In others, such as Escherichia coli, it is the N-terminal domain of a bifunctional enzyme that also catalyses N-(5'-phosphoribosyl)anthranilate isomerase (5.3.1.24 from EC) (PRAI) activity (see IPR001240 from INTERPRO), the third step of tryptophan biosynthesis. In fungi, IGPS is the central domain of a trifunctional enzyme that contains a PRAI C-terminal domain and a glutamine amidotransferase (2.4.2 from EC) (GATase) N-terminal domain (see IPR000991 from INTERPRO). A structure of the IGPS domain of the bifunctional enzyme from the mesophilic bacterium E. coli (eIGPS) has been compared with the monomeric indole-3-glycerol phosphate synthase from the hyperthermophilic archaeon Sulfolobus solfataricus (sIGPS). Both are single-domain (beta/alpha)8 barrel proteins, with one (eIGPS) or two (sIGPS) additional helices inserted before the first beta strand []. ; GO: 0004425 indole-3-glycerol-phosphate synthase activity; PDB: 1VC4_A 1PII_A 1JCM_P 1I4N_B 1J5T_A 3TSM_B 4FB7_A 3QJA_A 1JUL_A 2C3Z_A ....
Probab=95.70 E-value=0.018 Score=61.20 Aligned_cols=178 Identities=26% Similarity=0.377 Sum_probs=112.4
Q ss_pred hhhhhhhcCCcEEEEeccccccccCCccccccccccCchHHHHHhhhhhcCCCCCCceEEeeccCCCCCCHHHHHHHHHH
Q 004491 505 SAKFEEAGGVDLIVLYNSGRFRMAGRGSLAGLLPFADANAVVLEMANEVLPVVKEVPVLAGVCGTDPFRRVDYFLKQLES 584 (749)
Q Consensus 505 sAk~ae~gGaDli~~ynsGrfR~~G~~SlagllpygdaN~iv~e~~~eilp~v~~tPViaGv~atDP~~~~~~~l~~lk~ 584 (749)
.|+.=+++||+-|=++---+| |+-+.+-+.+..+. + ++||+. -| |.--+.-+.+-+.
T Consensus 73 ~a~~y~~~GA~aiSVlTe~~~-------------F~Gs~~dL~~v~~~----~-~~PvL~----KD-FIid~~QI~eA~~ 129 (254)
T PF00218_consen 73 IAKAYEEAGAAAISVLTEPKF-------------FGGSLEDLRAVRKA----V-DLPVLR----KD-FIIDPYQIYEARA 129 (254)
T ss_dssp HHHHHHHTT-SEEEEE--SCC-------------CHHHHHHHHHHHHH----S-SS-EEE----ES----SHHHHHHHHH
T ss_pred HHHHHHhcCCCEEEEECCCCC-------------CCCCHHHHHHHHHH----h-CCCccc----cc-CCCCHHHHHHHHH
Confidence 466778899999988766655 55555555544433 2 479988 44 4444556778889
Q ss_pred cCccceecCCcccccchhhhhhhhhcCCchHHHHHHHHHHHHcCCcccccccCHHHHHHHHhccCcEEEecc-CCCcccc
Q 004491 585 IGFFGVQNFPTVGLFDGNFRQNLEETGMGYGLEVEMIDKAHKMGLLTTPYAFNEGEAVKMAKAGADIIVAHM-GLTTSGS 663 (749)
Q Consensus 585 ~Gf~GV~NfPTvgliDG~fR~~LEe~G~gy~~EVemi~~A~~~gl~T~~yvf~~eqa~~Ma~AGaDiiv~h~-GlT~gG~ 663 (749)
.|=..|- ||-.-+-+ ++=-++++.|+++||-.+-=|.|++|.+...++|+++|.++- .|.
T Consensus 130 ~GADaVL------LI~~~L~~---------~~l~~l~~~a~~lGle~lVEVh~~~El~~al~~~a~iiGINnRdL~---- 190 (254)
T PF00218_consen 130 AGADAVL------LIAAILSD---------DQLEELLELAHSLGLEALVEVHNEEELERALEAGADIIGINNRDLK---- 190 (254)
T ss_dssp TT-SEEE------EEGGGSGH---------HHHHHHHHHHHHTT-EEEEEESSHHHHHHHHHTT-SEEEEESBCTT----
T ss_pred cCCCEee------hhHHhCCH---------HHHHHHHHHHHHcCCCeEEEECCHHHHHHHHHcCCCEEEEeCcccc----
Confidence 9998874 33322211 111479999999999999999999999999999999997762 222
Q ss_pred cccccccCHHHHHHHHHHHHHHHHHhCCCeEEEEccCCCCCHHHHHHHHhhCCCccEEecCcccccch-HHHHHH
Q 004491 664 IGAKTALSLDESVDRVQAIADAAHRINPDAIVLCHGGPISSPSEAEFILKRTKGVHGFYGASSMERLP-VEQAIT 737 (749)
Q Consensus 664 ~Ga~~~~sl~~~~~~~~~i~~aa~~~~pdii~l~hGGPi~~p~d~~~~l~~~~~~~Gf~g~Ss~ERlP-~E~ai~ 737 (749)
|++--.++..++ +..+.+|++++.-+| |.+|+|+.++. + .+++||.=|+++=|=| .++++.
T Consensus 191 -------tf~vd~~~~~~l---~~~ip~~~~~iseSG-I~~~~d~~~l~-~-~G~davLVGe~lm~~~d~~~~~~ 252 (254)
T PF00218_consen 191 -------TFEVDLNRTEEL---APLIPKDVIVISESG-IKTPEDARRLA-R-AGADAVLVGEALMRSPDPGEALR 252 (254)
T ss_dssp -------TCCBHTHHHHHH---HCHSHTTSEEEEESS--SSHHHHHHHC-T-TT-SEEEESHHHHTSSSHHHHHH
T ss_pred -------CcccChHHHHHH---HhhCccceeEEeecC-CCCHHHHHHHH-H-CCCCEEEECHHHhCCCCHHHHHh
Confidence 222223333344 333447777777766 99999999997 4 4789998888765543 444443
No 67
>cd00452 KDPG_aldolase KDPG and KHG aldolase. This family belongs to the class I adolases whose reaction mechanism involves Schiff base formation between a substrate carbonyl and lysine residue in the active site. 2-keto-3-deoxy-6-phosphogluconate (KDPG) aldolase, is best known for its role in the Entner-Doudoroff pathway of bacteria, where it catalyzes the reversible cleavage of KDPG to pyruvate and glyceraldehyde-3-phosphate. 2-keto-4-hydroxyglutarate (KHG) aldolase, which has enzymatic specificity toward glyoxylate, forming KHG in the presence of pyruvate, and is capable of regulating glyoxylate levels in the glyoxylate bypass, an alternate pathway when bacteria are grown on acetate carbon sources.
Probab=95.67 E-value=0.3 Score=49.00 Aligned_cols=154 Identities=23% Similarity=0.210 Sum_probs=102.1
Q ss_pred hhhhhhcCCcEEEEeccccccccCCccccccccccCchHHHHHhhhhhcCCCCCCceEEeeccCCCCCCHHHHHHHHHHc
Q 004491 506 AKFEEAGGVDLIVLYNSGRFRMAGRGSLAGLLPFADANAVVLEMANEVLPVVKEVPVLAGVCGTDPFRRVDYFLKQLESI 585 (749)
Q Consensus 506 Ak~ae~gGaDli~~ynsGrfR~~G~~SlagllpygdaN~iv~e~~~eilp~v~~tPViaGv~atDP~~~~~~~l~~lk~~ 585 (749)
++.+.++|+++|-+ |+ .|.-..++.+.+-...++.+|-+|-. .-..-++.+.+.
T Consensus 22 ~~~l~~~G~~~vev------~~--------------~~~~~~~~i~~l~~~~~~~~iGag~v------~~~~~~~~a~~~ 75 (190)
T cd00452 22 AEALIEGGIRAIEI------TL--------------RTPGALEAIRALRKEFPEALIGAGTV------LTPEQADAAIAA 75 (190)
T ss_pred HHHHHHCCCCEEEE------eC--------------CChhHHHHHHHHHHHCCCCEEEEEeC------CCHHHHHHHHHc
Confidence 45677889998874 21 12223334444433333445555532 224467888999
Q ss_pred CccceecCCcccccchhhhhhhhhcCCchHHHHHHHHHHHHcCCcccccccCHHHHHHHHhccCcEEEeccCCCcccccc
Q 004491 586 GFFGVQNFPTVGLFDGNFRQNLEETGMGYGLEVEMIDKAHKMGLLTTPYAFNEGEAVKMAKAGADIIVAHMGLTTSGSIG 665 (749)
Q Consensus 586 Gf~GV~NfPTvgliDG~fR~~LEe~G~gy~~EVemi~~A~~~gl~T~~yvf~~eqa~~Ma~AGaDiiv~h~GlT~gG~~G 665 (749)
|-.+|. .|. .| -+.++.+++.|+..++=+.|++|+.+..++|||+|-..-
T Consensus 76 Ga~~i~-~p~---~~-----------------~~~~~~~~~~~~~~i~gv~t~~e~~~A~~~Gad~i~~~p--------- 125 (190)
T cd00452 76 GAQFIV-SPG---LD-----------------PEVVKAANRAGIPLLPGVATPTEIMQALELGADIVKLFP--------- 125 (190)
T ss_pred CCCEEE-cCC---CC-----------------HHHHHHHHHcCCcEECCcCCHHHHHHHHHCCCCEEEEcC---------
Confidence 998884 231 11 258888999999999999999999999999999998632
Q ss_pred cccccCHHHHHHHHHHHHHHHHHhCCCeEEEEccCCCCCHHHHHHHHhhCCCccEEecCcccc
Q 004491 666 AKTALSLDESVDRVQAIADAAHRINPDAIVLCHGGPISSPSEAEFILKRTKGVHGFYGASSME 728 (749)
Q Consensus 666 a~~~~sl~~~~~~~~~i~~aa~~~~pdii~l~hGGPi~~p~d~~~~l~~~~~~~Gf~g~Ss~E 728 (749)
+. .. - .+.++..++..|++-+++-||= +++++..+++. +++|...+|.+=
T Consensus 126 ~~-~~----g----~~~~~~l~~~~~~~p~~a~GGI--~~~n~~~~~~~--G~~~v~v~s~i~ 175 (190)
T cd00452 126 AE-AV----G----PAYIKALKGPFPQVRFMPTGGV--SLDNAAEWLAA--GVVAVGGGSLLP 175 (190)
T ss_pred Cc-cc----C----HHHHHHHHhhCCCCeEEEeCCC--CHHHHHHHHHC--CCEEEEEchhcc
Confidence 01 11 1 1233334556677888888884 99999999855 588888887753
No 68
>TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase. at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase.
Probab=95.65 E-value=0.082 Score=53.04 Aligned_cols=162 Identities=23% Similarity=0.232 Sum_probs=102.8
Q ss_pred hHHHHHhhhhhcCCCCCCceEEeeccCCCCCCHHHHHHHHHHcCccceecCCcccccchhhhhhhhhcCCchHHHHHHHH
Q 004491 543 NAVVLEMANEVLPVVKEVPVLAGVCGTDPFRRVDYFLKQLESIGFFGVQNFPTVGLFDGNFRQNLEETGMGYGLEVEMID 622 (749)
Q Consensus 543 N~iv~e~~~eilp~v~~tPViaGv~atDP~~~~~~~l~~lk~~Gf~GV~NfPTvgliDG~fR~~LEe~G~gy~~EVemi~ 622 (749)
-+++.++.++ .| +.++++++.-.||-. .-++++.+.|..-|. ++-.. .+ ..+ -++++
T Consensus 40 ~~~i~~l~~~-~~---~~~i~~d~k~~d~~~---~~~~~~~~~Gad~i~-vh~~~--~~---~~~----------~~~i~ 96 (206)
T TIGR03128 40 IEAVKEMKEA-FP---DRKVLADLKTMDAGE---YEAEQAFAAGADIVT-VLGVA--DD---ATI----------KGAVK 96 (206)
T ss_pred HHHHHHHHHH-CC---CCEEEEEEeeccchH---HHHHHHHHcCCCEEE-EeccC--CH---HHH----------HHHHH
Confidence 3455555543 33 467899876557652 138899999977665 55221 10 011 36889
Q ss_pred HHHHcCCcccccccCH----HHHHHHHhccCcEEEeccCCCcccccccccccCHHHHHHHHHHHHHHHHHhCCCeEEEEc
Q 004491 623 KAHKMGLLTTPYAFNE----GEAVKMAKAGADIIVAHMGLTTSGSIGAKTALSLDESVDRVQAIADAAHRINPDAIVLCH 698 (749)
Q Consensus 623 ~A~~~gl~T~~yvf~~----eqa~~Ma~AGaDiiv~h~GlT~gG~~Ga~~~~sl~~~~~~~~~i~~aa~~~~pdii~l~h 698 (749)
.|+++|+...+-+.++ ++++.+.+.|+|++..+.|.... ..+ ... .++++++.+ ..+++.+++-
T Consensus 97 ~~~~~g~~~~~~~~~~~t~~~~~~~~~~~g~d~v~~~pg~~~~-~~~---~~~----~~~i~~l~~----~~~~~~i~v~ 164 (206)
T TIGR03128 97 AAKKHGKEVQVDLINVKDKVKRAKELKELGADYIGVHTGLDEQ-AKG---QNP----FEDLQTILK----LVKEARVAVA 164 (206)
T ss_pred HHHHcCCEEEEEecCCCChHHHHHHHHHcCCCEEEEcCCcCcc-cCC---CCC----HHHHHHHHH----hcCCCcEEEE
Confidence 9999999998876665 88999999999999887654321 111 112 223333322 2234455556
Q ss_pred cCCCCCHHHHHHHHhhCCCccEEecCcccccchHHHHHHHHHHhhccc
Q 004491 699 GGPISSPSEAEFILKRTKGVHGFYGASSMERLPVEQAITSTMRQYKSI 746 (749)
Q Consensus 699 GGPi~~p~d~~~~l~~~~~~~Gf~g~Ss~ERlP~E~ai~~~~~~FK~~ 746 (749)
||- +++.+..+++ .+++++.-+|++=+-+ -..+.+++||++
T Consensus 165 GGI--~~~n~~~~~~--~Ga~~v~vGsai~~~~---d~~~~~~~l~~~ 205 (206)
T TIGR03128 165 GGI--NLDTIPDVIK--LGPDIVIVGGAITKAA---DPAEAARQIRKL 205 (206)
T ss_pred CCc--CHHHHHHHHH--cCCCEEEEeehhcCCC---CHHHHHHHHHhh
Confidence 885 9999999985 4789999999974421 255666677653
No 69
>TIGR00735 hisF imidazoleglycerol phosphate synthase, cyclase subunit.
Probab=95.60 E-value=0.43 Score=50.12 Aligned_cols=183 Identities=16% Similarity=0.220 Sum_probs=104.0
Q ss_pred hhhhhhhcCCcEEEEeccccccccCCccccccccccCchHHHHHhhhhhcCCCCCCceEEeeccCCCCCCHHHHHHHHHH
Q 004491 505 SAKFEEAGGVDLIVLYNSGRFRMAGRGSLAGLLPFADANAVVLEMANEVLPVVKEVPVLAGVCGTDPFRRVDYFLKQLES 584 (749)
Q Consensus 505 sAk~ae~gGaDli~~ynsGrfR~~G~~SlagllpygdaN~iv~e~~~eilp~v~~tPViaGv~atDP~~~~~~~l~~lk~ 584 (749)
.|+..+..|+|.|.+.+.-+=.+ +.+ ..+++-++|.-.+ ++||++|=.-. +.+. ++++..
T Consensus 35 ~a~~~~~~G~~~l~v~Dl~~~~~-~~~-------------~n~~~i~~i~~~~-~~pv~~~GGi~----s~~d-~~~~~~ 94 (254)
T TIGR00735 35 LAQRYDEEGADELVFLDITASSE-GRT-------------TMIDVVERTAETV-FIPLTVGGGIK----SIED-VDKLLR 94 (254)
T ss_pred HHHHHHHcCCCEEEEEcCCcccc-cCh-------------hhHHHHHHHHHhc-CCCEEEECCCC----CHHH-HHHHHH
Confidence 45666779999999987643211 111 2233433333333 58999965443 3333 344455
Q ss_pred cCccceecCCcccccchhhhhhhhhcCCchHHHHHHHHHHHHc-C----Cccccc----------------------ccC
Q 004491 585 IGFFGVQNFPTVGLFDGNFRQNLEETGMGYGLEVEMIDKAHKM-G----LLTTPY----------------------AFN 637 (749)
Q Consensus 585 ~Gf~GV~NfPTvgliDG~fR~~LEe~G~gy~~EVemi~~A~~~-g----l~T~~y----------------------vf~ 637 (749)
.|..+|+ .-|..+- +.++++++.+. | .+.+.+ -.+
T Consensus 95 ~Ga~~vi-vgt~~~~-----------------~p~~~~~~~~~~~~~~iv~slD~~~g~~~~~~~~~v~i~gw~~~~~~~ 156 (254)
T TIGR00735 95 AGADKVS-INTAAVK-----------------NPELIYELADRFGSQCIVVAIDAKRVYVNSYCWYEVYIYGGRESTGLD 156 (254)
T ss_pred cCCCEEE-EChhHhh-----------------ChHHHHHHHHHcCCCCEEEEEEeccCCCCCCccEEEEEeCCcccCCCC
Confidence 7888763 1222111 22333333211 1 223321 122
Q ss_pred -HHHHHHHHhccCcEEEeccCCCcccccccccccCHHHHHHHHHHHHHHHHHhCCCeEEEEccCCCCCHHHHHHHHhhCC
Q 004491 638 -EGEAVKMAKAGADIIVAHMGLTTSGSIGAKTALSLDESVDRVQAIADAAHRINPDAIVLCHGGPISSPSEAEFILKRTK 716 (749)
Q Consensus 638 -~eqa~~Ma~AGaDiiv~h~GlT~gG~~Ga~~~~sl~~~~~~~~~i~~aa~~~~pdii~l~hGGPi~~p~d~~~~l~~~~ 716 (749)
.+-++++.++|+|.|++| +++..|+. ....++ .+.++.+. . ++-++.. |-|.+|+|++.+++. .
T Consensus 157 ~~~~~~~l~~~G~~~iivt-~i~~~g~~---~g~~~~----~~~~i~~~---~--~ipvia~-GGi~s~~di~~~~~~-g 221 (254)
T TIGR00735 157 AVEWAKEVEKLGAGEILLT-SMDKDGTK---SGYDLE----LTKAVSEA---V--KIPVIAS-GGAGKPEHFYEAFTK-G 221 (254)
T ss_pred HHHHHHHHHHcCCCEEEEe-CcCcccCC---CCCCHH----HHHHHHHh---C--CCCEEEe-CCCCCHHHHHHHHHc-C
Confidence 244578889999999998 46766652 233332 23333322 2 3444444 559999999999976 6
Q ss_pred CccEEecCccc--ccchHHHHHHHHH
Q 004491 717 GVHGFYGASSM--ERLPVEQAITSTM 740 (749)
Q Consensus 717 ~~~Gf~g~Ss~--ERlP~E~ai~~~~ 740 (749)
+++|.+-++.+ .+++.+.++....
T Consensus 222 ~~dgv~~g~a~~~~~~~~~~~~~~~~ 247 (254)
T TIGR00735 222 KADAALAASVFHYREITIGEVKEYLA 247 (254)
T ss_pred CcceeeEhHHHhCCCCCHHHHHHHHH
Confidence 69998888884 5899887655443
No 70
>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed
Probab=95.59 E-value=0.18 Score=57.99 Aligned_cols=162 Identities=24% Similarity=0.346 Sum_probs=97.3
Q ss_pred CCcccccHHHHHHHHHH----HhhcCCCeEEeccccch----hhhhhhhcCCcEEEEeccccccccCCccccccccccCc
Q 004491 471 RPETLQRTQAILSKLKY----QIDKGLPIIGAGAGTGI----SAKFEEAGGVDLIVLYNSGRFRMAGRGSLAGLLPFADA 542 (749)
Q Consensus 471 ~~~~~~~r~~il~~L~~----~i~~~~piig~gaGtGl----sAk~ae~gGaDli~~ynsGrfR~~G~~Slagllpygda 542 (749)
+..-+.++++|++.+.. +-..|+.++|++.|+.- .++.-.++|+|+|++-.+- |+
T Consensus 190 ~lvGiIT~~DLl~~~~~p~a~~d~~g~l~V~aai~~~~~~~e~a~~L~~agvdvivvD~a~-----g~------------ 252 (486)
T PRK05567 190 RLKGLITVKDIEKAEEFPNACKDEQGRLRVGAAVGVGADNEERAEALVEAGVDVLVVDTAH-----GH------------ 252 (486)
T ss_pred cEEEEEEhHHhhhhhhCCCcccccCCCEEEEeecccCcchHHHHHHHHHhCCCEEEEECCC-----Cc------------
Confidence 45566778888877643 12346777888888653 5666667888877643221 11
Q ss_pred hHHHHHhhhhhcCCCCCCceEEeeccCCCCCCHHHHHHHHHHcCccceecCCcccccchhhhhhhhhcCCchHHHHHHHH
Q 004491 543 NAVVLEMANEVLPVVKEVPVLAGVCGTDPFRRVDYFLKQLESIGFFGVQNFPTVGLFDGNFRQNLEETGMGYGLEVEMID 622 (749)
Q Consensus 543 N~iv~e~~~eilp~v~~tPViaGv~atDP~~~~~~~l~~lk~~Gf~GV~NfPTvgliDG~fR~~LEe~G~gy~~EVemi~ 622 (749)
+.-+.++-+++-...++.||++|=
T Consensus 253 ~~~vl~~i~~i~~~~p~~~vi~g~-------------------------------------------------------- 276 (486)
T PRK05567 253 SEGVLDRVREIKAKYPDVQIIAGN-------------------------------------------------------- 276 (486)
T ss_pred chhHHHHHHHHHhhCCCCCEEEec--------------------------------------------------------
Confidence 122444444444444567777743
Q ss_pred HHHHcCCcccccccCHHHHHHHHhccCcEEEeccCCCccccccccc---c--cCHHHHHHHHHHHHHHHHHhCCCeEEEE
Q 004491 623 KAHKMGLLTTPYAFNEGEAVKMAKAGADIIVAHMGLTTSGSIGAKT---A--LSLDESVDRVQAIADAAHRINPDAIVLC 697 (749)
Q Consensus 623 ~A~~~gl~T~~yvf~~eqa~~Ma~AGaDiiv~h~GlT~gG~~Ga~~---~--~sl~~~~~~~~~i~~aa~~~~pdii~l~ 697 (749)
+.+.++|+.+.+||||+|-+ |.+ .|++-... . .+- +..+.++.++++ ..++-+++
T Consensus 277 ------------v~t~e~a~~l~~aGad~i~v--g~g-~gs~~~~r~~~~~g~p~---~~~~~~~~~~~~--~~~~~via 336 (486)
T PRK05567 277 ------------VATAEAARALIEAGADAVKV--GIG-PGSICTTRIVAGVGVPQ---ITAIADAAEAAK--KYGIPVIA 336 (486)
T ss_pred ------------cCCHHHHHHHHHcCCCEEEE--CCC-CCccccceeecCCCcCH---HHHHHHHHHHhc--cCCCeEEE
Confidence 88999999999999999984 443 33321110 0 111 112222233333 33567778
Q ss_pred ccCCCCCHHHHHHHHhhCCCccEEecCcccc
Q 004491 698 HGGPISSPSEAEFILKRTKGVHGFYGASSME 728 (749)
Q Consensus 698 hGGPi~~p~d~~~~l~~~~~~~Gf~g~Ss~E 728 (749)
.|| |.+|.|+..-|.. +++...-||.|=
T Consensus 337 dGG-i~~~~di~kAla~--GA~~v~~G~~~a 364 (486)
T PRK05567 337 DGG-IRYSGDIAKALAA--GASAVMLGSMLA 364 (486)
T ss_pred cCC-CCCHHHHHHHHHh--CCCEEEECcccc
Confidence 876 9999999999854 556666666553
No 71
>cd04743 NPD_PKS 2-Nitropropane dioxygenase (NPD)-like domain, associated with polyketide synthases (PKS). NPD is part of the nitroalkaneoxidizing enzyme family, that catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDPs are members of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=95.55 E-value=0.11 Score=56.95 Aligned_cols=154 Identities=18% Similarity=0.168 Sum_probs=98.0
Q ss_pred hHHHHHhhhhhcCCCCCCceEEeecc--CCCCCCHHHHHHHHHHcCccceecCCcccccchhhhhhhhhcCCchHHHHHH
Q 004491 543 NAVVLEMANEVLPVVKEVPVLAGVCG--TDPFRRVDYFLKQLESIGFFGVQNFPTVGLFDGNFRQNLEETGMGYGLEVEM 620 (749)
Q Consensus 543 N~iv~e~~~eilp~v~~tPViaGv~a--tDP~~~~~~~l~~lk~~Gf~GV~NfPTvgliDG~fR~~LEe~G~gy~~EVem 620 (749)
.+.+.++-+++--...+-| ||||- ..|....+..++-+.+.+-.=| .+-| |--.+
T Consensus 39 ~e~l~~~i~~~~~l~tdkP--fGVnl~~~~~~~~~~~~l~vi~e~~v~~V-------~~~~-----------G~P~~--- 95 (320)
T cd04743 39 GEQVKALLEETAELLGDKP--WGVGILGFVDTELRAAQLAVVRAIKPTFA-------LIAG-----------GRPDQ--- 95 (320)
T ss_pred HHHHHHHHHHHHHhccCCC--eEEEEeccCCCcchHHHHHHHHhcCCcEE-------EEcC-----------CChHH---
Confidence 3444444433322223457 45443 3222235677888888654333 2222 11222
Q ss_pred HHHHHHcCCcccccccCHHHHHHHHhccCcEEEeccCCCcccccccccccCHHHHHHHHHHHHHHHHHh-----CCCeEE
Q 004491 621 IDKAHKMGLLTTPYAFNEGEAVKMAKAGADIIVAHMGLTTSGSIGAKTALSLDESVDRVQAIADAAHRI-----NPDAIV 695 (749)
Q Consensus 621 i~~A~~~gl~T~~yvf~~eqa~~Ma~AGaDiiv~h~GlT~gG~~Ga~~~~sl~~~~~~~~~i~~aa~~~-----~pdii~ 695 (749)
+++.|+.|+.+++-|-|+++|+++.++|||+||+. |.-.||.+|..+... +++++.++..+. ..++-|
T Consensus 96 ~~~lk~~Gi~v~~~v~s~~~A~~a~~~GaD~vVaq-G~EAGGH~G~~~t~~------L~~~v~~~l~~~~~~~~~~~iPV 168 (320)
T cd04743 96 ARALEAIGISTYLHVPSPGLLKQFLENGARKFIFE-GRECGGHVGPRSSFV------LWESAIDALLAANGPDKAGKIHL 168 (320)
T ss_pred HHHHHHCCCEEEEEeCCHHHHHHHHHcCCCEEEEe-cCcCcCCCCCCCchh------hHHHHHHHHHHhhcccccCCccE
Confidence 47788899999999999999999999999999996 888999998554444 344444444321 236778
Q ss_pred EEccCCCCCHHHHHHHHhhCC-----Cc-cEEecCccc
Q 004491 696 LCHGGPISSPSEAEFILKRTK-----GV-HGFYGASSM 727 (749)
Q Consensus 696 l~hGGPi~~p~d~~~~l~~~~-----~~-~Gf~g~Ss~ 727 (749)
+.-|| |.+...+...+.--. ++ +|-+=++.|
T Consensus 169 iAAGG-I~dgr~~aaalaLGA~~~~~Ga~~GV~mGTrF 205 (320)
T cd04743 169 LFAGG-IHDERSAAMVSALAAPLAERGAKVGVLMGTAY 205 (320)
T ss_pred EEEcC-CCCHHHHHHHHHcCCcccccccccEEEEccHH
Confidence 88776 999999888874422 12 577777765
No 72
>PRK08318 dihydropyrimidine dehydrogenase subunit B; Validated
Probab=95.47 E-value=1.4 Score=49.58 Aligned_cols=159 Identities=14% Similarity=0.112 Sum_probs=88.7
Q ss_pred hhcCCCCCCceEEeeccC-CCCCCHHHHHHHHHHcCcccee-cC--Cc-ccccchhhhhhhhhcCCchHHHHHHHHHHHH
Q 004491 552 EVLPVVKEVPVLAGVCGT-DPFRRVDYFLKQLESIGFFGVQ-NF--PT-VGLFDGNFRQNLEETGMGYGLEVEMIDKAHK 626 (749)
Q Consensus 552 eilp~v~~tPViaGv~at-DP~~~~~~~l~~lk~~Gf~GV~-Nf--PT-vgliDG~fR~~LEe~G~gy~~EVemi~~A~~ 626 (749)
+++...+++||+++|++. +| ..+.++.+.+++.|+.+|. |+ |- +..-+ +...|.+ -.++=.++++..++
T Consensus 92 ~~~~~~~~~p~i~si~g~~~~-~~~~~~a~~~~~~g~d~ielN~scP~~~~~~~--~g~~~~~---~~~~~~~i~~~v~~ 165 (420)
T PRK08318 92 RVKRDYPDRALIASIMVECNE-EEWKEIAPLVEETGADGIELNFGCPHGMSERG--MGSAVGQ---VPELVEMYTRWVKR 165 (420)
T ss_pred HHHhhCCCceEEEEeccCCCH-HHHHHHHHHHHhcCCCEEEEeCCCCCCccccC--CcccccC---CHHHHHHHHHHHHh
Confidence 344444568999999998 76 5678899999999988874 55 64 43211 1111111 12233455565555
Q ss_pred cCCcccc-------cccCH-HHHHHHHhccCcEEEe---------------------ccCCCcccccccccccCHHHHHH
Q 004491 627 MGLLTTP-------YAFNE-GEAVKMAKAGADIIVA---------------------HMGLTTSGSIGAKTALSLDESVD 677 (749)
Q Consensus 627 ~gl~T~~-------yvf~~-eqa~~Ma~AGaDiiv~---------------------h~GlT~gG~~Ga~~~~sl~~~~~ 677 (749)
. ..+| ++-+. +-|++..++|||-|++ |-....||.-|.. -..-+.+
T Consensus 166 ~--~~~Pv~vKl~p~~~~~~~~a~~~~~~Gadgi~~~Nt~~~~~~id~~~~~~~p~~~~~~~~gg~SG~a---~~p~~l~ 240 (420)
T PRK08318 166 G--SRLPVIVKLTPNITDIREPARAAKRGGADAVSLINTINSITGVDLDRMIPMPIVNGKSSHGGYCGPA---VKPIALN 240 (420)
T ss_pred c--cCCcEEEEcCCCcccHHHHHHHHHHCCCCEEEEecccCccccccccccCCCceecCCCCcccccchh---hhHHHHH
Confidence 4 2233 44444 4455567899999993 2222234444421 0111233
Q ss_pred HHHHHHHHHHHhC-CCeEEEEccCCCCCHHHHHHHHhhCCCccEEecCccc
Q 004491 678 RVQAIADAAHRIN-PDAIVLCHGGPISSPSEAEFILKRTKGVHGFYGASSM 727 (749)
Q Consensus 678 ~~~~i~~aa~~~~-pdii~l~hGGPi~~p~d~~~~l~~~~~~~Gf~g~Ss~ 727 (749)
. |.+..++.+ +++-++--|| |.+++|+..++. .++++.-=+|.+
T Consensus 241 ~---v~~~~~~~~~~~ipIig~GG-I~s~~da~e~i~--aGA~~Vqi~ta~ 285 (420)
T PRK08318 241 M---VAEIARDPETRGLPISGIGG-IETWRDAAEFIL--LGAGTVQVCTAA 285 (420)
T ss_pred H---HHHHHhccccCCCCEEeecC-cCCHHHHHHHHH--hCCChheeeeee
Confidence 3 333334442 3555555554 999999999984 566665544443
No 73
>PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=95.37 E-value=0.15 Score=52.88 Aligned_cols=104 Identities=19% Similarity=0.247 Sum_probs=78.1
Q ss_pred HHHHHHHHcCCcccccccCHHHHHHHHhccCcEEEeccCCCcccccccccccCHHHHHHHHHHHHHHHHHhCCCeEEEEc
Q 004491 619 EMIDKAHKMGLLTTPYAFNEGEAVKMAKAGADIIVAHMGLTTSGSIGAKTALSLDESVDRVQAIADAAHRINPDAIVLCH 698 (749)
Q Consensus 619 emi~~A~~~gl~T~~yvf~~eqa~~Ma~AGaDiiv~h~GlT~gG~~Ga~~~~sl~~~~~~~~~i~~aa~~~~pdii~l~h 698 (749)
|+++.|++.|+..+|=++|++|+.+..++|+|+|-.... +. ..++ ..++.+..-|++-++.=
T Consensus 100 ~v~~~~~~~~i~~iPG~~T~~E~~~A~~~Gad~vklFPa----~~------~G~~--------~ik~l~~~~p~ip~~at 161 (213)
T PRK06552 100 ETAKICNLYQIPYLPGCMTVTEIVTALEAGSEIVKLFPG----ST------LGPS--------FIKAIKGPLPQVNVMVT 161 (213)
T ss_pred HHHHHHHHcCCCEECCcCCHHHHHHHHHcCCCEEEECCc----cc------CCHH--------HHHHHhhhCCCCEEEEE
Confidence 678999999999999999999999999999999998541 11 2221 13444667788888888
Q ss_pred cCCCCCHHHHHHHHhhCCCccEEecCcccccchHH----HHHHHHHHhhcc
Q 004491 699 GGPISSPSEAEFILKRTKGVHGFYGASSMERLPVE----QAITSTMRQYKS 745 (749)
Q Consensus 699 GGPi~~p~d~~~~l~~~~~~~Gf~g~Ss~ERlP~E----~ai~~~~~~FK~ 745 (749)
|| -+++.+..+++. +++++-.+|++-.- .+ ..|++.+++|++
T Consensus 162 GG--I~~~N~~~~l~a--Ga~~vavgs~l~~~-~~~~~~~~i~~~a~~~~~ 207 (213)
T PRK06552 162 GG--VNLDNVKDWFAA--GADAVGIGGELNKL-ASQGDFDLITEKAKKYMS 207 (213)
T ss_pred CC--CCHHHHHHHHHC--CCcEEEEchHHhCc-cccCCHHHHHHHHHHHHH
Confidence 88 578999999954 67899999988432 11 356666666654
No 74
>TIGR01304 IMP_DH_rel_2 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase. Most species with a member of this family belong to the high GC Gram-positive bacteria, and these also have the IMP dehydrogenase described by TIGRFAMs equivalog model TIGR01302.
Probab=95.34 E-value=0.23 Score=55.51 Aligned_cols=131 Identities=18% Similarity=0.216 Sum_probs=81.3
Q ss_pred HHHHHHHHHcCccceecCCcccccchhhhhhhhhcCCchHHHHHHHHHHHHcCCccccccc----CHHHHHHHHhccCcE
Q 004491 576 DYFLKQLESIGFFGVQNFPTVGLFDGNFRQNLEETGMGYGLEVEMIDKAHKMGLLTTPYAF----NEGEAVKMAKAGADI 651 (749)
Q Consensus 576 ~~~l~~lk~~Gf~GV~NfPTvgliDG~fR~~LEe~G~gy~~EVemi~~A~~~gl~T~~yvf----~~eqa~~Ma~AGaDi 651 (749)
.+..+.++++++.- ..-++=.++|+..++.+ .|+..-- ..|-++.+.+||||+
T Consensus 102 a~aa~~~~e~~~~~----------------------~~p~l~~~ii~~vr~a~-VtvkiRl~~~~~~e~a~~l~eAGad~ 158 (369)
T TIGR01304 102 AAATRLLQELHAAP----------------------LKPELLGERIAEVRDSG-VITAVRVSPQNAREIAPIVVKAGADL 158 (369)
T ss_pred HHHHHHHHHcCCCc----------------------cChHHHHHHHHHHHhcc-eEEEEecCCcCHHHHHHHHHHCCCCE
Confidence 56777778877765 13344457788888876 6655432 347778889999999
Q ss_pred EEeccCCCcccccccccccCHHHHHHHHHHHHHHHHHhCCCeEEEEccCCCCCHHHHHHHHhhCCCccEEecC----ccc
Q 004491 652 IVAHMGLTTSGSIGAKTALSLDESVDRVQAIADAAHRINPDAIVLCHGGPISSPSEAEFILKRTKGVHGFYGA----SSM 727 (749)
Q Consensus 652 iv~h~GlT~gG~~Ga~~~~sl~~~~~~~~~i~~aa~~~~pdii~l~hGGPi~~p~d~~~~l~~~~~~~Gf~g~----Ss~ 727 (749)
|++|- -|..-......+. .+ .|.+..++. ++.|++ |+ +.+++|++++++ .+++|..++ ++.
T Consensus 159 I~ihg-rt~~q~~~sg~~~-p~-------~l~~~i~~~--~IPVI~-G~-V~t~e~A~~~~~--aGaDgV~~G~gg~~~~ 223 (369)
T TIGR01304 159 LVIQG-TLVSAEHVSTSGE-PL-------NLKEFIGEL--DVPVIA-GG-VNDYTTALHLMR--TGAAGVIVGPGGANTT 223 (369)
T ss_pred EEEec-cchhhhccCCCCC-HH-------HHHHHHHHC--CCCEEE-eC-CCCHHHHHHHHH--cCCCEEEECCCCCccc
Confidence 99992 2211000000111 12 233333433 345554 44 999999999995 689998744 122
Q ss_pred c-----cchHHHHHHHHHHhhc
Q 004491 728 E-----RLPVEQAITSTMRQYK 744 (749)
Q Consensus 728 E-----RlP~E~ai~~~~~~FK 744 (749)
+ .+|...+|.+....++
T Consensus 224 ~~~lg~~~p~~~ai~d~~~a~~ 245 (369)
T TIGR01304 224 RLVLGIEVPMATAIADVAAARR 245 (369)
T ss_pred ccccCCCCCHHHHHHHHHHHHH
Confidence 2 4899999988876543
No 75
>PRK07565 dihydroorotate dehydrogenase 2; Reviewed
Probab=95.32 E-value=0.51 Score=51.57 Aligned_cols=217 Identities=18% Similarity=0.191 Sum_probs=114.3
Q ss_pred CCCeEEeccccchhh---hhhhhcCCcEEEEecccc----------ccccCCcc--cc---ccccc-cCchHHHHHhhhh
Q 004491 492 GLPIIGAGAGTGISA---KFEEAGGVDLIVLYNSGR----------FRMAGRGS--LA---GLLPF-ADANAVVLEMANE 552 (749)
Q Consensus 492 ~~piig~gaGtGlsA---k~ae~gGaDli~~ynsGr----------fR~~G~~S--la---gllpy-gdaN~iv~e~~~e 552 (749)
..||+.++.+.+-++ +.....|+=.|++=.-.. ||-.|.+. +. +++.- |-.|.=+-++.++
T Consensus 13 ~nPv~~asg~~~~~~~~~~~~~~~g~Gavv~kti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~gl~n~g~d~~~~~ 92 (334)
T PRK07565 13 RNPLVASASPLSESVDNVKRLEDAGAGAVVLKSLFEEQIRHEAAELDRHLTHGTESFAEALDYFPEPAKFYVGPEEYLEL 92 (334)
T ss_pred CCCCEecCcCCCCCHHHHHHHHHCCCeEEEEeeCCHHHhhccccccccccccCCCcchhhhhhhhhhhccCcCHHHHHHH
Confidence 457877666665443 445566777777643221 22222211 11 22221 3344444444445
Q ss_pred hcCCCC--CCceEEeeccCCCCCCHHHHHHHHHHcCcccee-cC--Cccc-ccchhhhhhhhhcCCchHHHHHHHHHHHH
Q 004491 553 VLPVVK--EVPVLAGVCGTDPFRRVDYFLKQLESIGFFGVQ-NF--PTVG-LFDGNFRQNLEETGMGYGLEVEMIDKAHK 626 (749)
Q Consensus 553 ilp~v~--~tPViaGv~atDP~~~~~~~l~~lk~~Gf~GV~-Nf--PTvg-liDG~fR~~LEe~G~gy~~EVemi~~A~~ 626 (749)
+.+..+ ++||++.+++.+|- ++.++.+.+++.|+.+|. |+ |-.- ...|.... ++=.|+++..++
T Consensus 93 i~~~~~~~~~pvi~sI~g~~~~-e~~~~a~~~~~agad~ielN~scpp~~~~~~g~~~~---------~~~~eil~~v~~ 162 (334)
T PRK07565 93 IRRAKEAVDIPVIASLNGSSAG-GWVDYARQIEQAGADALELNIYYLPTDPDISGAEVE---------QRYLDILRAVKS 162 (334)
T ss_pred HHHHHHhcCCcEEEEeccCCHH-HHHHHHHHHHHcCCCEEEEeCCCCCCCCCCccccHH---------HHHHHHHHHHHh
Confidence 444432 58999999998873 667888999999999984 43 3221 11121110 111466666655
Q ss_pred c-CCccc----ccccCH-HHHHHHHhccCcEEEeccCCCccccccc-----------ccccCHHHHHHHHHHHHHHHHHh
Q 004491 627 M-GLLTT----PYAFNE-GEAVKMAKAGADIIVAHMGLTTSGSIGA-----------KTALSLDESVDRVQAIADAAHRI 689 (749)
Q Consensus 627 ~-gl~T~----~yvf~~-eqa~~Ma~AGaDiiv~h~GlT~gG~~Ga-----------~~~~sl~~~~~~~~~i~~aa~~~ 689 (749)
. ++.-+ |++-+. +-|+++.++|+|-|++|-... +..+.. .....+..+.+.+.++.+ ..
T Consensus 163 ~~~iPV~vKl~p~~~~~~~~a~~l~~~G~dgI~~~n~~~-~~~~d~~~~~~~~~~glsg~~~~~~al~~v~~~~~---~~ 238 (334)
T PRK07565 163 AVSIPVAVKLSPYFSNLANMAKRLDAAGADGLVLFNRFY-QPDIDLETLEVVPGLVLSTPAELRLPLRWIAILSG---RV 238 (334)
T ss_pred ccCCcEEEEeCCCchhHHHHHHHHHHcCCCeEEEECCcC-CCCcChhhcccccCCCCCCchhhhHHHHHHHHHHh---hc
Confidence 3 22221 222233 445556789999999995532 222221 111223334444444432 33
Q ss_pred CCCeEEEEccCCCCCHHHHHHHHhhCCCccEEecCccc
Q 004491 690 NPDAIVLCHGGPISSPSEAEFILKRTKGVHGFYGASSM 727 (749)
Q Consensus 690 ~pdii~l~hGGPi~~p~d~~~~l~~~~~~~Gf~g~Ss~ 727 (749)
++-++ --|-|.+++|+..++. .++++---++.+
T Consensus 239 --~ipIi-g~GGI~s~~Da~e~l~--aGA~~V~v~t~~ 271 (334)
T PRK07565 239 --GADLA-ATTGVHDAEDVIKMLL--AGADVVMIASAL 271 (334)
T ss_pred --CCCEE-EECCCCCHHHHHHHHH--cCCCceeeehHH
Confidence 23333 3456999999999994 566665555443
No 76
>PRK06801 hypothetical protein; Provisional
Probab=95.29 E-value=0.8 Score=49.66 Aligned_cols=175 Identities=19% Similarity=0.276 Sum_probs=110.4
Q ss_pred hhhhhcCCcEEEEeccccccccCCccccccccccCchHHHHHhhhhhcCCCCCCceEEeeccCCCCCCHHHHHHHHHHcC
Q 004491 507 KFEEAGGVDLIVLYNSGRFRMAGRGSLAGLLPFADANAVVLEMANEVLPVVKEVPVLAGVCGTDPFRRVDYFLKQLESIG 586 (749)
Q Consensus 507 k~ae~gGaDli~~ynsGrfR~~G~~SlagllpygdaN~iv~e~~~eilp~v~~tPViaGv~atDP~~~~~~~l~~lk~~G 586 (749)
+.||+-++.+||-...|..+- .++...=.++.+++++. .+||.-= .|=-.+. ..+++.-+.|
T Consensus 36 ~AAe~~~~PvIl~~~~~~~~~---------~~~~~~~~~~~~~a~~~-----~vpV~lH---lDH~~~~-e~i~~Ai~~G 97 (286)
T PRK06801 36 AAAKQERSPFIINIAEVHFKY---------ISLESLVEAVKFEAARH-----DIPVVLN---LDHGLHF-EAVVRALRLG 97 (286)
T ss_pred HHHHHHCCCEEEEeCcchhhc---------CCHHHHHHHHHHHHHHC-----CCCEEEE---CCCCCCH-HHHHHHHHhC
Confidence 568899999999887776653 33444455666777542 4576433 3433344 4567777789
Q ss_pred ccceecCCcccccch---hhhhhhhhcCCchHHHHHHHHHHHHcCCcc--------------------cccccCHHHHHH
Q 004491 587 FFGVQNFPTVGLFDG---NFRQNLEETGMGYGLEVEMIDKAHKMGLLT--------------------TPYAFNEGEAVK 643 (749)
Q Consensus 587 f~GV~NfPTvgliDG---~fR~~LEe~G~gy~~EVemi~~A~~~gl~T--------------------~~yvf~~eqa~~ 643 (749)
|+.|+ +|| .|++|++.+ -++.+.||+.|+-- ...-.++|||++
T Consensus 98 ftSVm-------~D~S~l~~eeNi~~t-------~~v~~~a~~~gv~VE~ElG~vgg~e~~v~~~~~~~~~~T~pe~a~~ 163 (286)
T PRK06801 98 FSSVM-------FDGSTLEYEENVRQT-------REVVKMCHAVGVSVEAELGAVGGDEGGALYGEADSAKFTDPQLARD 163 (286)
T ss_pred CcEEE-------EcCCCCCHHHHHHHH-------HHHHHHHHHcCCeEEeecCcccCCCCCcccCCcccccCCCHHHHHH
Confidence 99886 354 356666533 23344455555321 011226699999
Q ss_pred HH-hccCcEEEeccCCCcccccccccccCHHHHHHHHHHHHHHHHHhCCCeEEEEccCCCCCHHHHHHHHhhCCCccEEe
Q 004491 644 MA-KAGADIIVAHMGLTTSGSIGAKTALSLDESVDRVQAIADAAHRINPDAIVLCHGGPISSPSEAEFILKRTKGVHGFY 722 (749)
Q Consensus 644 Ma-~AGaDiiv~h~GlT~gG~~Ga~~~~sl~~~~~~~~~i~~aa~~~~pdii~l~hGGPi~~p~d~~~~l~~~~~~~Gf~ 722 (749)
+. +-|+|.|.+.+|-|.|-.-+ +..+.++ ++++|.++. ++-+..|||.=.++++++.+.+. ++.++=
T Consensus 164 f~~~tgvD~LAvaiGt~Hg~y~~-~~~l~~e----~l~~i~~~~-----~~PLVlHGGSgi~~e~~~~~i~~--Gi~KIN 231 (286)
T PRK06801 164 FVDRTGIDALAVAIGNAHGKYKG-EPKLDFA----RLAAIHQQT-----GLPLVLHGGSGISDADFRRAIEL--GIHKIN 231 (286)
T ss_pred HHHHHCcCEEEeccCCCCCCCCC-CCCCCHH----HHHHHHHhc-----CCCEEEECCCCCCHHHHHHHHHc--CCcEEE
Confidence 98 89999999999987776544 2234443 566665543 35567899976778899888744 565554
Q ss_pred cCc
Q 004491 723 GAS 725 (749)
Q Consensus 723 g~S 725 (749)
-.|
T Consensus 232 v~T 234 (286)
T PRK06801 232 FYT 234 (286)
T ss_pred ehh
Confidence 333
No 77
>TIGR00343 pyridoxal 5'-phosphate synthase, synthase subunit Pdx1. This protein had been believed to be a singlet oxygen resistance protein. Subsequent work showed that it is a protein of pyridoxine (vitamin B6) biosynthesis, and that pyridoxine quenches the highly toxic singlet form of oxygen produced by light in the presence of certain chemicals.
Probab=95.25 E-value=1.4 Score=47.93 Aligned_cols=178 Identities=22% Similarity=0.289 Sum_probs=105.6
Q ss_pred cchhhhhhhhcCCcEEEEe---------ccccccccCCccccccccccCchHHHHHhhhhhcCCCCCCceEEeeccCCCC
Q 004491 502 TGISAKFEEAGGVDLIVLY---------NSGRFRMAGRGSLAGLLPFADANAVVLEMANEVLPVVKEVPVLAGVCGTDPF 572 (749)
Q Consensus 502 tGlsAk~ae~gGaDli~~y---------nsGrfR~~G~~SlagllpygdaN~iv~e~~~eilp~v~~tPViaGv~atDP~ 572 (749)
+---||.||++||=-++++ ..|--||++ .++-++|...| ++||++=+-
T Consensus 19 ~~eqa~iae~aga~avm~le~~p~d~r~~ggv~R~~~-----------------p~~I~~I~~~V-~iPVig~~k----- 75 (287)
T TIGR00343 19 NPEQAKIAEEAGAVAVMALERVPADIRASGGVARMSD-----------------PKMIKEIMDAV-SIPVMAKVR----- 75 (287)
T ss_pred CHHHHHHHHHcCceEEEeeccCchhhHhcCCeeecCC-----------------HHHHHHHHHhC-CCCEEEEee-----
Confidence 3446999999999999987 345555544 35667888888 799997543
Q ss_pred CCHHHHHHHHHHcCccceecCCcccccchhhhhhhhhcCCchHHHHHHHHHHHHc-CCcccccccCHHHHHHHHhccCcE
Q 004491 573 RRVDYFLKQLESIGFFGVQNFPTVGLFDGNFRQNLEETGMGYGLEVEMIDKAHKM-GLLTTPYAFNEGEAVKMAKAGADI 651 (749)
Q Consensus 573 ~~~~~~l~~lk~~Gf~GV~NfPTvgliDG~fR~~LEe~G~gy~~EVemi~~A~~~-gl~T~~yvf~~eqa~~Ma~AGaDi 651 (749)
+..-.-.+.|.++|.- .||.+-|..- .+..+..+ +++ +.+-++=+-|.+||.+-.+.|||+
T Consensus 76 igh~~Ea~~L~~~GvD---------iIDeTe~lrP------ade~~~~~---K~~f~vpfmad~~~l~EAlrai~~Gadm 137 (287)
T TIGR00343 76 IGHFVEAQILEALGVD---------YIDESEVLTP------ADWTFHID---KKKFKVPFVCGARDLGEALRRINEGAAM 137 (287)
T ss_pred ccHHHHHHHHHHcCCC---------EEEccCCCCc------HHHHHHHH---HHHcCCCEEccCCCHHHHHHHHHCCCCE
Confidence 1122334556666643 3465444433 23334433 332 555555567889999999999999
Q ss_pred EEeccCCCccccccc-----------cc-------------ccCHHHHHHHHHHHHHHHHHhCCCeEE-EEccCCCCCHH
Q 004491 652 IVAHMGLTTSGSIGA-----------KT-------------ALSLDESVDRVQAIADAAHRINPDAIV-LCHGGPISSPS 706 (749)
Q Consensus 652 iv~h~GlT~gG~~Ga-----------~~-------------~~sl~~~~~~~~~i~~aa~~~~pdii~-l~hGGPi~~p~ 706 (749)
|=...---||-..-+ +. +..++--.+.+.++. +..+=.++ ++-|| |+||+
T Consensus 138 I~Tt~e~gTg~v~~av~hlr~~~~~~~~~~~~~~~~~~~~~a~~~~~~~elLkei~----~~~~iPVV~fAiGG-I~TPe 212 (287)
T TIGR00343 138 IRTKGEAGTGNIVEAVRHMRKINEEIRQIQNMLEEEDLAAVAKELRVPVELLLEVL----KLGKLPVVNFAAGG-VATPA 212 (287)
T ss_pred EeccccCCCccHHHHHHHHHHHHHHHHHHhcccchhHHhhhhcccCCCHHHHHHHH----HhCCCCEEEeccCC-CCCHH
Confidence 965543222210000 00 000111112222222 21121233 36665 99999
Q ss_pred HHHHHHhhCCCccEEecCccc
Q 004491 707 EAEFILKRTKGVHGFYGASSM 727 (749)
Q Consensus 707 d~~~~l~~~~~~~Gf~g~Ss~ 727 (749)
|+..+++ .+++|++-+|.+
T Consensus 213 dAa~~me--lGAdGVaVGSaI 231 (287)
T TIGR00343 213 DAALMMQ--LGADGVFVGSGI 231 (287)
T ss_pred HHHHHHH--cCCCEEEEhHHh
Confidence 9999996 489999999998
No 78
>PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=95.22 E-value=0.14 Score=53.06 Aligned_cols=111 Identities=19% Similarity=0.104 Sum_probs=82.9
Q ss_pred CchHHHHHHHHHHHHcCCcccccccCHHHHHHHHhccCcEEEeccCCCcccccccccccCHHHHHHHHHHHHHHHHHhCC
Q 004491 612 MGYGLEVEMIDKAHKMGLLTTPYAFNEGEAVKMAKAGADIIVAHMGLTTSGSIGAKTALSLDESVDRVQAIADAAHRINP 691 (749)
Q Consensus 612 ~gy~~EVemi~~A~~~gl~T~~yvf~~eqa~~Ma~AGaDiiv~h~GlT~gG~~Ga~~~~sl~~~~~~~~~i~~aa~~~~p 691 (749)
.+++. ++|+.|+++++..+|=++|+.|+.+..++|+|++..+..-..||. ...++-+..-|
T Consensus 94 P~~~~--~vi~~a~~~~i~~iPG~~TptEi~~a~~~Ga~~vKlFPa~~~gg~-----------------~~lk~l~~p~p 154 (212)
T PRK05718 94 PGLTP--PLLKAAQEGPIPLIPGVSTPSELMLGMELGLRTFKFFPAEASGGV-----------------KMLKALAGPFP 154 (212)
T ss_pred CCCCH--HHHHHHHHcCCCEeCCCCCHHHHHHHHHCCCCEEEEccchhccCH-----------------HHHHHHhccCC
Confidence 34555 789999999999999999999999999999999999764222211 23344566668
Q ss_pred CeEEEEccCCCCCHHHHHHHHhhCCCccEEecCccccc-chHH----HHHHHHHHhhcc
Q 004491 692 DAIVLCHGGPISSPSEAEFILKRTKGVHGFYGASSMER-LPVE----QAITSTMRQYKS 745 (749)
Q Consensus 692 dii~l~hGGPi~~p~d~~~~l~~~~~~~Gf~g~Ss~ER-lP~E----~ai~~~~~~FK~ 745 (749)
++-++.-|| -+++++..+++. . .....|+|.+=. =.++ .+|++..++|..
T Consensus 155 ~~~~~ptGG--V~~~ni~~~l~a-g-~v~~vggs~L~~~~~~~~~~~~~i~~~a~~~~~ 209 (212)
T PRK05718 155 DVRFCPTGG--ISPANYRDYLAL-P-NVLCIGGSWMVPKDAIENGDWDRITRLAREAVA 209 (212)
T ss_pred CCeEEEeCC--CCHHHHHHHHhC-C-CEEEEEChHhCCcchhccccHHHHHHHHHHHHH
Confidence 888888888 688999999976 3 457777888732 2233 568888887754
No 79
>PRK11815 tRNA-dihydrouridine synthase A; Provisional
Probab=95.09 E-value=0.17 Score=55.46 Aligned_cols=153 Identities=23% Similarity=0.268 Sum_probs=86.0
Q ss_pred CCceEEeeccCCCCCCHHHHHHHHHHcCccce-ecC--CcccccchhhhhhhhhcCCchHHHHHHHHHHHHc-CC-ccc-
Q 004491 559 EVPVLAGVCGTDPFRRVDYFLKQLESIGFFGV-QNF--PTVGLFDGNFRQNLEETGMGYGLEVEMIDKAHKM-GL-LTT- 632 (749)
Q Consensus 559 ~tPViaGv~atDP~~~~~~~l~~lk~~Gf~GV-~Nf--PTvgliDG~fR~~LEe~G~gy~~EVemi~~A~~~-gl-~T~- 632 (749)
+.|++.=+++.||- .+-+=-+.+++.||.|| .|+ |..-...+.+...|+.. .++=.|+++..++. ++ +|+
T Consensus 64 e~p~~vQl~g~~p~-~~~~aA~~~~~~g~d~IdlN~gCP~~~v~~~~~Gs~L~~~---p~~~~eiv~avr~~v~~pVsvK 139 (333)
T PRK11815 64 EHPVALQLGGSDPA-DLAEAAKLAEDWGYDEINLNVGCPSDRVQNGRFGACLMAE---PELVADCVKAMKDAVSIPVTVK 139 (333)
T ss_pred CCcEEEEEeCCCHH-HHHHHHHHHHhcCCCEEEEcCCCCHHHccCCCeeeHHhcC---HHHHHHHHHHHHHHcCCceEEE
Confidence 57999999999994 45556677888999999 787 54433344344444332 12223455555542 22 111
Q ss_pred ---cccc--CHHH----HHHHHhccCcEEEeccCCC-cccccccc----cccCHHHHHHHHHHHHHHHHHhCCCeEEEEc
Q 004491 633 ---PYAF--NEGE----AVKMAKAGADIIVAHMGLT-TSGSIGAK----TALSLDESVDRVQAIADAAHRINPDAIVLCH 698 (749)
Q Consensus 633 ---~yvf--~~eq----a~~Ma~AGaDiiv~h~GlT-~gG~~Ga~----~~~sl~~~~~~~~~i~~aa~~~~pdii~l~h 698 (749)
.+-- +.++ ++.+.++|+|.|.+|...- ..|.-|.. ....++ .+.++ ++.-+++-|+.-
T Consensus 140 iR~g~~~~~t~~~~~~~~~~l~~aG~d~i~vh~Rt~~~~g~~~~~~~~~~~~~~~----~i~~v----~~~~~~iPVI~n 211 (333)
T PRK11815 140 HRIGIDDQDSYEFLCDFVDTVAEAGCDTFIVHARKAWLKGLSPKENREIPPLDYD----RVYRL----KRDFPHLTIEIN 211 (333)
T ss_pred EEeeeCCCcCHHHHHHHHHHHHHhCCCEEEEcCCchhhcCCCccccccCCCcCHH----HHHHH----HHhCCCCeEEEE
Confidence 1111 1122 4566789999999993211 23433321 011222 12222 222345555554
Q ss_pred cCCCCCHHHHHHHHhhCCCccEEecCccc
Q 004491 699 GGPISSPSEAEFILKRTKGVHGFYGASSM 727 (749)
Q Consensus 699 GGPi~~p~d~~~~l~~~~~~~Gf~g~Ss~ 727 (749)
|-|.+|+|++.+++. ++|..=|..+
T Consensus 212 -GgI~s~eda~~~l~~---aDgVmIGRa~ 236 (333)
T PRK11815 212 -GGIKTLEEAKEHLQH---VDGVMIGRAA 236 (333)
T ss_pred -CCcCCHHHHHHHHhc---CCEEEEcHHH
Confidence 459999999999963 7887665543
No 80
>cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA). TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan.
Probab=95.05 E-value=1.1 Score=46.86 Aligned_cols=131 Identities=22% Similarity=0.268 Sum_probs=97.3
Q ss_pred eccCCCCCC-HHHHHHHHHHcCcccee-cCCc-ccccchhhhhhhh----hcCCchHHHHHHHHHHHHcCCcccc---cc
Q 004491 566 VCGTDPFRR-VDYFLKQLESIGFFGVQ-NFPT-VGLFDGNFRQNLE----ETGMGYGLEVEMIDKAHKMGLLTTP---YA 635 (749)
Q Consensus 566 v~atDP~~~-~~~~l~~lk~~Gf~GV~-NfPT-vgliDG~fR~~LE----e~G~gy~~EVemi~~A~~~gl~T~~---yv 635 (749)
+.+.||..+ ..+++++|.+.|..-+. |+|. =-..||.|=++.- +.|+.++.=.++++..++.- .+| .+
T Consensus 6 ~~~G~P~~~~~~~~~~~l~~~Gad~iel~iPfsdPv~DG~~I~~a~~~al~~g~~~~~~~~~~~~vr~~~--~~pv~lm~ 83 (242)
T cd04724 6 ITAGDPDLETTLEILKALVEAGADIIELGIPFSDPVADGPVIQAASERALANGVTLKDVLELVKEIRKKN--TIPIVLMG 83 (242)
T ss_pred EeCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHhhcC--CCCEEEEE
Confidence 567788754 67888888888877663 4544 2278999988765 67888888888898888753 334 22
Q ss_pred c-C-------HHHHHHHHhccCcEEEeccCCCcccccccccccCHHHHHHHHHHHHHHHHHhCCCeEEEEccCCCCCHHH
Q 004491 636 F-N-------EGEAVKMAKAGADIIVAHMGLTTSGSIGAKTALSLDESVDRVQAIADAAHRINPDAIVLCHGGPISSPSE 707 (749)
Q Consensus 636 f-~-------~eqa~~Ma~AGaDiiv~h~GlT~gG~~Ga~~~~sl~~~~~~~~~i~~aa~~~~pdii~l~hGGPi~~p~d 707 (749)
| | +.=.+.+.++|+|-|++| .+..| ...++.+.+++.+.+.+++|- |-++++.
T Consensus 84 y~n~~~~~G~~~fi~~~~~aG~~giiip-------------Dl~~e----e~~~~~~~~~~~g~~~i~~i~--P~T~~~~ 144 (242)
T cd04724 84 YYNPILQYGLERFLRDAKEAGVDGLIIP-------------DLPPE----EAEEFREAAKEYGLDLIFLVA--PTTPDER 144 (242)
T ss_pred ecCHHHHhCHHHHHHHHHHCCCcEEEEC-------------CCCHH----HHHHHHHHHHHcCCcEEEEeC--CCCCHHH
Confidence 3 6 344777899999988886 22333 567888999999999999986 8888999
Q ss_pred HHHHHhhCCC
Q 004491 708 AEFILKRTKG 717 (749)
Q Consensus 708 ~~~~l~~~~~ 717 (749)
++++++...+
T Consensus 145 i~~i~~~~~~ 154 (242)
T cd04724 145 IKKIAELASG 154 (242)
T ss_pred HHHHHhhCCC
Confidence 9999974343
No 81
>TIGR01859 fruc_bis_ald_ fructose-1,6-bisphosphate aldolase, class II, various bacterial and amitochondriate protist. This model represents of one of several subtypes of the class II fructose-1,6-bisphosphate aldolase, an enzyme of glycolysis. The subtypes are split into several models to allow separation of a family of tagatose bisphosphate aldolases. This form is found in Gram-positive bacteria, a variety of Gram-negative, and in amitochondriate protists. The class II enzymes share homology with tagatose bisphosphate aldolase but not with class I aldolase.
Probab=95.04 E-value=1.1 Score=48.37 Aligned_cols=179 Identities=20% Similarity=0.285 Sum_probs=109.8
Q ss_pred hhhhhcCCcEEEEeccccccccCCccccccccccCchHHHHHhhhhhcCCCCCCceEEeeccCCCCCCHHHHHHHHHHcC
Q 004491 507 KFEEAGGVDLIVLYNSGRFRMAGRGSLAGLLPFADANAVVLEMANEVLPVVKEVPVLAGVCGTDPFRRVDYFLKQLESIG 586 (749)
Q Consensus 507 k~ae~gGaDli~~ynsGrfR~~G~~SlagllpygdaN~iv~e~~~eilp~v~~tPViaGv~atDP~~~~~~~l~~lk~~G 586 (749)
+.||+-++.+|+..+.+-.+..|. |..-=..+.+++++ .+.+||.-=++-.++ . +++++..+.|
T Consensus 34 ~aAe~~~~PvIl~~~~~~~~~~~~--------~~~~~~~~~~~a~~----~~~vpv~lhlDH~~~---~-e~i~~ai~~G 97 (282)
T TIGR01859 34 EAAEEENSPVIIQVSEGAIKYMGG--------YKMAVAMVKTLIER----MSIVPVALHLDHGSS---Y-ESCIKAIKAG 97 (282)
T ss_pred HHHHHhCCCEEEEcCcchhhccCc--------HHHHHHHHHHHHHH----CCCCeEEEECCCCCC---H-HHHHHHHHcC
Confidence 578888999999877765554321 22222344444443 322688766654443 2 4667777889
Q ss_pred ccceecCCcccccch---hhhhhhhhcCCchHHHHHHHHHHHHcCCccc-----------------ccccCHHHHHHHHh
Q 004491 587 FFGVQNFPTVGLFDG---NFRQNLEETGMGYGLEVEMIDKAHKMGLLTT-----------------PYAFNEGEAVKMAK 646 (749)
Q Consensus 587 f~GV~NfPTvgliDG---~fR~~LEe~G~gy~~EVemi~~A~~~gl~T~-----------------~yvf~~eqa~~Ma~ 646 (749)
|+-|+ +|+ .|.+|++. =.++.+.||+.|.--- ....++|||++..+
T Consensus 98 f~sVm-------id~s~l~~~eni~~-------t~~v~~~a~~~gv~Ve~ElG~~gg~ed~~~g~~~~~t~~eea~~f~~ 163 (282)
T TIGR01859 98 FSSVM-------IDGSHLPFEENLAL-------TKKVVEIAHAKGVSVEAELGTLGGIEDGVDEKEAELADPDEAEQFVK 163 (282)
T ss_pred CCEEE-------ECCCCCCHHHHHHH-------HHHHHHHHHHcCCEEEEeeCCCcCccccccccccccCCHHHHHHHHH
Confidence 98874 443 35566543 3466677777665211 23459999999996
Q ss_pred -ccCcEEEeccCCCcccccccccccCHHHHHHHHHHHHHHHHHhCCCeEEEEccCCCCCHHHHHHHHhhCCCccEEecCc
Q 004491 647 -AGADIIVAHMGLTTSGSIGAKTALSLDESVDRVQAIADAAHRINPDAIVLCHGGPISSPSEAEFILKRTKGVHGFYGAS 725 (749)
Q Consensus 647 -AGaDiiv~h~GlT~gG~~Ga~~~~sl~~~~~~~~~i~~aa~~~~pdii~l~hGGPi~~p~d~~~~l~~~~~~~Gf~g~S 725 (749)
.|+|.|.+-+|-..|=..+ +..+. .+++++|.++. ++-+..|||-=-++++++.+.+. ++.+.=-++
T Consensus 164 ~tgvD~Lavs~Gt~hg~~~~-~~~l~----~e~L~~i~~~~-----~iPlv~hGgSGi~~e~i~~~i~~--Gi~kiNv~T 231 (282)
T TIGR01859 164 ETGVDYLAAAIGTSHGKYKG-EPGLD----FERLKEIKELT-----NIPLVLHGASGIPEEQIKKAIKL--GIAKINIDT 231 (282)
T ss_pred HHCcCEEeeccCccccccCC-CCccC----HHHHHHHHHHh-----CCCEEEECCCCCCHHHHHHHHHc--CCCEEEECc
Confidence 9999999765543332222 12233 44566665543 46678999544678889888855 677765554
Q ss_pred cc
Q 004491 726 SM 727 (749)
Q Consensus 726 s~ 727 (749)
-+
T Consensus 232 ~l 233 (282)
T TIGR01859 232 DC 233 (282)
T ss_pred HH
Confidence 43
No 82
>PRK10550 tRNA-dihydrouridine synthase C; Provisional
Probab=94.97 E-value=0.5 Score=51.56 Aligned_cols=148 Identities=18% Similarity=0.154 Sum_probs=82.1
Q ss_pred CCCceEEeeccCCCCCCHHHHHHHHHHcCcccee-cC--Cc--ccccchhhhhhhhhcCCchHHHHHHHHHHHHc---CC
Q 004491 558 KEVPVLAGVCGTDPFRRVDYFLKQLESIGFFGVQ-NF--PT--VGLFDGNFRQNLEETGMGYGLEVEMIDKAHKM---GL 629 (749)
Q Consensus 558 ~~tPViaGv~atDP~~~~~~~l~~lk~~Gf~GV~-Nf--PT--vgliDG~fR~~LEe~G~gy~~EVemi~~A~~~---gl 629 (749)
.+.|++.=+++.||- .+-+=-+.+++.||.+|. |+ |. |. ..-....|... .++=.|+++..++. ++
T Consensus 61 ~e~p~~vQl~g~~p~-~~~~aA~~~~~~g~d~IdiN~GCP~~~v~--~~g~Gs~Ll~~---~~~~~eiv~avr~~~~~~~ 134 (312)
T PRK10550 61 SGTLVRIQLLGQYPQ-WLAENAARAVELGSWGVDLNCGCPSKTVN--GSGGGATLLKD---PELIYQGAKAMREAVPAHL 134 (312)
T ss_pred CCCcEEEEeccCCHH-HHHHHHHHHHHcCCCEEEEeCCCCchHHh--cCCCchHhhcC---HHHHHHHHHHHHHhcCCCc
Confidence 358999999999993 455555678889999986 54 43 32 11111111111 12223444444442 21
Q ss_pred -ccc----cccc---CHHHHHHHHhccCcEEEeccCCCcccccccccccCHHHHHHHHHHHHHHHHHhCCCeEEEEccCC
Q 004491 630 -LTT----PYAF---NEGEAVKMAKAGADIIVAHMGLTTSGSIGAKTALSLDESVDRVQAIADAAHRINPDAIVLCHGGP 701 (749)
Q Consensus 630 -~T~----~yvf---~~eqa~~Ma~AGaDiiv~h~GlT~gG~~Ga~~~~sl~~~~~~~~~i~~aa~~~~pdii~l~hGGP 701 (749)
+|+ .|-- ..+=|+.+.++|+|.|.+|.+....|..|. +... +.+.++.++ + ++-|+.- |-
T Consensus 135 pVsvKiR~g~~~~~~~~~~a~~l~~~Gvd~i~Vh~Rt~~~~y~g~--~~~~----~~i~~ik~~---~--~iPVi~n-Gd 202 (312)
T PRK10550 135 PVTVKVRLGWDSGERKFEIADAVQQAGATELVVHGRTKEDGYRAE--HINW----QAIGEIRQR---L--TIPVIAN-GE 202 (312)
T ss_pred ceEEEEECCCCCchHHHHHHHHHHhcCCCEEEECCCCCccCCCCC--cccH----HHHHHHHhh---c--CCcEEEe-CC
Confidence 111 2210 123445566899999999976544433321 1122 223333222 2 3445544 55
Q ss_pred CCCHHHHHHHHhhCCCccEEecC
Q 004491 702 ISSPSEAEFILKRTKGVHGFYGA 724 (749)
Q Consensus 702 i~~p~d~~~~l~~~~~~~Gf~g~ 724 (749)
|.+|+|++.++++ ++|||..=|
T Consensus 203 I~t~~da~~~l~~-~g~DgVmiG 224 (312)
T PRK10550 203 IWDWQSAQQCMAI-TGCDAVMIG 224 (312)
T ss_pred cCCHHHHHHHHhc-cCCCEEEEc
Confidence 9999999999977 678886433
No 83
>PRK07807 inosine 5-monophosphate dehydrogenase; Validated
Probab=94.91 E-value=0.13 Score=59.22 Aligned_cols=130 Identities=21% Similarity=0.239 Sum_probs=88.4
Q ss_pred CCHHHHHHHHHHcCccceecCCcccccchhhhhhhhhcCCchHHHHHHHHHHHHc--CCcccc-cccCHHHHHHHHhccC
Q 004491 573 RRVDYFLKQLESIGFFGVQNFPTVGLFDGNFRQNLEETGMGYGLEVEMIDKAHKM--GLLTTP-YAFNEGEAVKMAKAGA 649 (749)
Q Consensus 573 ~~~~~~l~~lk~~Gf~GV~NfPTvgliDG~fR~~LEe~G~gy~~EVemi~~A~~~--gl~T~~-yvf~~eqa~~Ma~AGa 649 (749)
.+..+.+++|.+.|..=|. +|-.-+.+ ..=++||+.=|++ ++.-++ -|-+.|+|+.+.+|||
T Consensus 226 ~~~~~~a~~Lv~aGvd~i~-------~D~a~~~~--------~~~~~~i~~ik~~~p~~~v~agnv~t~~~a~~l~~aGa 290 (479)
T PRK07807 226 GDVAAKARALLEAGVDVLV-------VDTAHGHQ--------EKMLEALRAVRALDPGVPIVAGNVVTAEGTRDLVEAGA 290 (479)
T ss_pred hhHHHHHHHHHHhCCCEEE-------EeccCCcc--------HHHHHHHHHHHHHCCCCeEEeeccCCHHHHHHHHHcCC
Confidence 4577888888888754432 34222221 1224566666665 777777 9999999999999999
Q ss_pred cEEEeccCC----CcccccccccccCHHHHHHHHHHHHHHHHHhCCCeEEEEccCCCCCHHHHHHHHhhCCCccEEecCc
Q 004491 650 DIIVAHMGL----TTSGSIGAKTALSLDESVDRVQAIADAAHRINPDAIVLCHGGPISSPSEAEFILKRTKGVHGFYGAS 725 (749)
Q Consensus 650 Diiv~h~Gl----T~gG~~Ga~~~~sl~~~~~~~~~i~~aa~~~~pdii~l~hGGPi~~p~d~~~~l~~~~~~~Gf~g~S 725 (749)
|.|=+-+|- |+.+..|... --...+.++.++|++. ++-|++-|| |.+|.|+...|.. +++.-.-||
T Consensus 291 d~v~vgig~gsictt~~~~~~~~-----p~~~av~~~~~~~~~~--~~~via~gg-i~~~~~~~~al~~--ga~~v~~g~ 360 (479)
T PRK07807 291 DIVKVGVGPGAMCTTRMMTGVGR-----PQFSAVLECAAAAREL--GAHVWADGG-VRHPRDVALALAA--GASNVMIGS 360 (479)
T ss_pred CEEEECccCCcccccccccCCch-----hHHHHHHHHHHHHHhc--CCcEEecCC-CCCHHHHHHHHHc--CCCeeeccH
Confidence 999999998 9998887653 1233344444545443 566777765 9999999999954 445555444
Q ss_pred cc
Q 004491 726 SM 727 (749)
Q Consensus 726 s~ 727 (749)
-|
T Consensus 361 ~~ 362 (479)
T PRK07807 361 WF 362 (479)
T ss_pred hh
Confidence 43
No 84
>PRK11840 bifunctional sulfur carrier protein/thiazole synthase protein; Provisional
Probab=94.90 E-value=0.1 Score=57.44 Aligned_cols=101 Identities=23% Similarity=0.343 Sum_probs=74.9
Q ss_pred CchHHHHHHHHHHHHc---CCcccccccC-HHHHHHHHhccCcEEEeccCCCcccccccccccCHHHHHHHHHHHHHHHH
Q 004491 612 MGYGLEVEMIDKAHKM---GLLTTPYAFN-EGEAVKMAKAGADIIVAHMGLTTSGSIGAKTALSLDESVDRVQAIADAAH 687 (749)
Q Consensus 612 ~gy~~EVemi~~A~~~---gl~T~~yvf~-~eqa~~Ma~AGaDiiv~h~GlT~gG~~Ga~~~~sl~~~~~~~~~i~~aa~ 687 (749)
+-+..=.+.++.|+++ ||.++||+.+ +++|++++++|+ ++-|-| +.-||....++=.+. ++.+.+.
T Consensus 178 ~llpd~~~~v~aa~~L~~~Gf~v~~yc~~d~~~a~~l~~~g~---~avmPl--~~pIGsg~gv~~p~~---i~~~~e~-- 247 (326)
T PRK11840 178 TLYPDMVETLKATEILVKEGFQVMVYCSDDPIAAKRLEDAGA---VAVMPL--GAPIGSGLGIQNPYT---IRLIVEG-- 247 (326)
T ss_pred CcccCHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHhcCC---EEEeec--cccccCCCCCCCHHH---HHHHHHc--
Confidence 4456667899999999 9999999985 699999999999 333333 345666556663333 3444433
Q ss_pred HhCCCeEEEEccCCCCCHHHHHHHHhhCCCccEEecCcccc
Q 004491 688 RINPDAIVLCHGGPISSPSEAEFILKRTKGVHGFYGASSME 728 (749)
Q Consensus 688 ~~~pdii~l~hGGPi~~p~d~~~~l~~~~~~~Gf~g~Ss~E 728 (749)
+++-|+|-+| |.+|+|+...++- ++||-.-+|.+=
T Consensus 248 ---~~vpVivdAG-Ig~~sda~~Amel--GadgVL~nSaIa 282 (326)
T PRK11840 248 ---ATVPVLVDAG-VGTASDAAVAMEL--GCDGVLMNTAIA 282 (326)
T ss_pred ---CCCcEEEeCC-CCCHHHHHHHHHc--CCCEEEEcceec
Confidence 6777777655 9999999999954 789999999875
No 85
>PF00290 Trp_syntA: Tryptophan synthase alpha chain; InterPro: IPR002028 Tryptophan synthase (4.2.1.20 from EC) catalyzes the last step in the biosynthesis of tryptophan [, ]: L-serine + 1-(indol-3-yl)glycerol 3-phosphate = L-tryptophan + glyceraldehyde 3-phosphate + H2O It has two functional domains, each found in bacteria and plants on a separate subunit. In Escherichia coli, the 2 subunits, A and B, are encoded by the trpA and trpB genes respectively. The alpha chain is for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate and the beta chain IPR006653 from INTERPRO is for the synthesis of tryptophan from indole and serine. In fungi the two domains are fused together in a single multifunctional protein, in the order: (NH2-A-B-COOH) [, ]. The two domains of the Neurospora crassa polypeptide are linked by a connector of 54-amino acid residues that has less than 25% identity to the 45-residue connector of the Saccharomyces cerevisiae (Baker's yeast) polypeptide. Two acidic residues are believed to serve as proton donors/acceptors in the enzyme's catalytic mechanism.; GO: 0004834 tryptophan synthase activity, 0006568 tryptophan metabolic process; PDB: 1TJR_B 1RD5_B 1K8X_A 1QOQ_A 1KFE_A 1KFB_A 2CLO_A 1TTP_A 2RH9_A 1K7F_A ....
Probab=94.88 E-value=0.2 Score=53.59 Aligned_cols=151 Identities=23% Similarity=0.372 Sum_probs=96.8
Q ss_pred HHHhhhhhcCCCCCCceEEeeccCCCC-CCHHHHHHHHHHcCcccee--cCCcccccchhhhhhhhhcCCchHHHHHHHH
Q 004491 546 VLEMANEVLPVVKEVPVLAGVCGTDPF-RRVDYFLKQLESIGFFGVQ--NFPTVGLFDGNFRQNLEETGMGYGLEVEMID 622 (749)
Q Consensus 546 v~e~~~eilp~v~~tPViaGv~atDP~-~~~~~~l~~lk~~Gf~GV~--NfPTvgliDG~fR~~LEe~G~gy~~EVemi~ 622 (749)
++++.+++-..-.++|++.=-..++-| .-+++|++++++.|+.||. ..| ++.--++..
T Consensus 74 ~~~~~~~ir~~~~~~pivlm~Y~N~i~~~G~e~F~~~~~~aGvdGlIipDLP-------------------~ee~~~~~~ 134 (259)
T PF00290_consen 74 IFELVKEIRKKEPDIPIVLMTYYNPIFQYGIERFFKEAKEAGVDGLIIPDLP-------------------PEESEELRE 134 (259)
T ss_dssp HHHHHHHHHHHCTSSEEEEEE-HHHHHHH-HHHHHHHHHHHTEEEEEETTSB-------------------GGGHHHHHH
T ss_pred HHHHHHHHhccCCCCCEEEEeeccHHhccchHHHHHHHHHcCCCEEEEcCCC-------------------hHHHHHHHH
Confidence 445555555333578976544444334 3588999999999999986 333 222235667
Q ss_pred HHHHcCCcccccccC---HHHHHHHHhccCcEEE--eccCCCcccccccccccCHHHHHHHHHHHHHHHHHhCCCeEEEE
Q 004491 623 KAHKMGLLTTPYAFN---EGEAVKMAKAGADIIV--AHMGLTTSGSIGAKTALSLDESVDRVQAIADAAHRINPDAIVLC 697 (749)
Q Consensus 623 ~A~~~gl~T~~yvf~---~eqa~~Ma~AGaDiiv--~h~GlT~gG~~Ga~~~~sl~~~~~~~~~i~~aa~~~~pdii~l~ 697 (749)
.|++.||-.++|+-- ++..+++++..-..|. .++|.| |.++.. .+ .+.+..+..++...-.+++
T Consensus 135 ~~~~~gl~~I~lv~p~t~~~Ri~~i~~~a~gFiY~vs~~GvT-----G~~~~~--~~---~l~~~i~~ik~~~~~Pv~v- 203 (259)
T PF00290_consen 135 AAKKHGLDLIPLVAPTTPEERIKKIAKQASGFIYLVSRMGVT-----GSRTEL--PD---ELKEFIKRIKKHTDLPVAV- 203 (259)
T ss_dssp HHHHTT-EEEEEEETTS-HHHHHHHHHH-SSEEEEESSSSSS-----STTSSC--HH---HHHHHHHHHHHTTSS-EEE-
T ss_pred HHHHcCCeEEEEECCCCCHHHHHHHHHhCCcEEEeeccCCCC-----CCcccc--hH---HHHHHHHHHHhhcCcceEE-
Confidence 889999999988865 7888888887777664 366655 443322 21 2234444455555444555
Q ss_pred ccCCCCCHHHHHHHHhhCCCccEEecCcccccc
Q 004491 698 HGGPISSPSEAEFILKRTKGVHGFYGASSMERL 730 (749)
Q Consensus 698 hGGPi~~p~d~~~~l~~~~~~~Gf~g~Ss~ERl 730 (749)
|=-|++|++++.+. ..+||.+-||.+=|+
T Consensus 204 -GFGI~~~e~~~~~~---~~aDGvIVGSa~v~~ 232 (259)
T PF00290_consen 204 -GFGISTPEQAKKLA---AGADGVIVGSAFVKI 232 (259)
T ss_dssp -ESSS-SHHHHHHHH---TTSSEEEESHHHHHH
T ss_pred -ecCCCCHHHHHHHH---ccCCEEEECHHHHHH
Confidence 55699999999998 457999999987555
No 86
>TIGR00222 panB 3-methyl-2-oxobutanoate hydroxymethyltransferase. Members of this family are 3-methyl-2-oxobutanoate hydroxymethyltransferase, the first enzyme of the pantothenate biosynthesis pathway. An alternate name is ketopantoate hydroxymethyltransferase.
Probab=94.85 E-value=0.22 Score=53.44 Aligned_cols=143 Identities=20% Similarity=0.260 Sum_probs=89.3
Q ss_pred HHHHHHHhhcCCCeEEeccccchhhhhhhhcCCcEEEEeccccccccCCccccccccccCchHHHHHhh----hhhcCCC
Q 004491 482 LSKLKYQIDKGLPIIGAGAGTGISAKFEEAGGVDLIVLYNSGRFRMAGRGSLAGLLPFADANAVVLEMA----NEVLPVV 557 (749)
Q Consensus 482 l~~L~~~i~~~~piig~gaGtGlsAk~ae~gGaDli~~ynsGrfR~~G~~SlagllpygdaN~iv~e~~----~eilp~v 557 (749)
+..|++.-++|+||+-..+=-..||+.+++.|+|.|++ |-+.-.-.|-|.|-..+.+|.- +.|.-.+
T Consensus 4 ~~~~~~~~~~g~~i~m~tayD~~sA~i~~~aG~d~ilv---------GdSlgm~~lG~~~t~~vtldem~~h~~aV~rg~ 74 (263)
T TIGR00222 4 TLSLLQKKKQEEKIVAITAYDYSFAKLFADAGVDVILV---------GDSLGMVVLGHDSTLPVTVADMIYHTAAVKRGA 74 (263)
T ss_pred HHHHHHHHhCCCcEEEEeccCHHHHHHHHHcCCCEEEE---------CccHhHHhcCCCCCCCcCHHHHHHHHHHHHhhC
Confidence 44567777789999999999999999999999999994 3222334455666655666653 3344433
Q ss_pred C------CCceEEeeccCCCCCCHHHHHHHHHHcCccceecCCcccccchhhhhhhhhcCCchHHHHHHHHHHHHcCCcc
Q 004491 558 K------EVPVLAGVCGTDPFRRVDYFLKQLESIGFFGVQNFPTVGLFDGNFRQNLEETGMGYGLEVEMIDKAHKMGLLT 631 (749)
Q Consensus 558 ~------~tPViaGv~atDP~~~~~~~l~~lk~~Gf~GV~NfPTvgliDG~fR~~LEe~G~gy~~EVemi~~A~~~gl~T 631 (749)
+ |.|+- +. . ||-.-+..=.+-+++.|..||. |.| | ..=++.|+...+.|+--
T Consensus 75 ~~~~vv~DmPf~-sy-~-~~e~a~~na~rl~~eaGa~aVk-------iEg---------g---~~~~~~i~~l~~~gIpV 132 (263)
T TIGR00222 75 PNCLIVTDLPFM-SY-A-TPEQALKNAARVMQETGANAVK-------LEG---------G---EWLVETVQMLTERGVPV 132 (263)
T ss_pred CCceEEeCCCcC-CC-C-CHHHHHHHHHHHHHHhCCeEEE-------EcC---------c---HhHHHHHHHHHHCCCCE
Confidence 3 33322 11 1 2333333344456668888885 222 1 22357788888877655
Q ss_pred c---------c-----ccc---CH-------HHHHHHHhccCcEEEec
Q 004491 632 T---------P-----YAF---NE-------GEAVKMAKAGADIIVAH 655 (749)
Q Consensus 632 ~---------~-----yvf---~~-------eqa~~Ma~AGaDiiv~h 655 (749)
+ . |.. +. ++|+++.+||||.|++=
T Consensus 133 ~gHiGltPq~a~~~ggy~~qgrt~~~a~~~i~~A~a~e~AGA~~ivlE 180 (263)
T TIGR00222 133 VGHLGLTPQSVNILGGYKVQGKDEEAAKKLLEDALALEEAGAQLLVLE 180 (263)
T ss_pred EEecCCCceeEeecCCeeecCCCHHHHHHHHHHHHHHHHcCCCEEEEc
Confidence 5 1 221 22 34788889999999874
No 87
>PRK02506 dihydroorotate dehydrogenase 1A; Reviewed
Probab=94.82 E-value=0.19 Score=54.56 Aligned_cols=168 Identities=14% Similarity=0.084 Sum_probs=102.4
Q ss_pred HHHHHHHHHHhhc--CCCeEEeccc--cch---hhhhhhhcC-CcEEEEeccccccccCCccccccccccCchHHHHHhh
Q 004491 479 QAILSKLKYQIDK--GLPIIGAGAG--TGI---SAKFEEAGG-VDLIVLYNSGRFRMAGRGSLAGLLPFADANAVVLEMA 550 (749)
Q Consensus 479 ~~il~~L~~~i~~--~~piig~gaG--tGl---sAk~ae~gG-aDli~~ynsGrfR~~G~~SlagllpygdaN~iv~e~~ 550 (749)
+..++++++.-+. ++|+|..-.| .+- .|+..+..| ||.|-+ |-.-==.. +...|+..-+.+.|+.
T Consensus 77 ~~~~~~i~~~~~~~~~~pvI~Si~G~~~~~~~~~a~~~~~~g~ad~iEl-N~ScPn~~------~~~~~g~d~~~~~~i~ 149 (310)
T PRK02506 77 DYYLDYVLELQKKGPNKPHFLSVVGLSPEETHTILKKIQASDFNGLVEL-NLSCPNVP------GKPQIAYDFETTEQIL 149 (310)
T ss_pred HHHHHHHHHHHhhcCCCCEEEEEEeCcHHHHHHHHHHHhhcCCCCEEEE-ECCCCCCC------CccccccCHHHHHHHH
Confidence 4455555542222 5888876444 232 344455566 998775 22110011 2334555556778888
Q ss_pred hhhcCCCCCCceEEeeccCCCCCCHHHHHHHHHHcCccceecCCccc---ccchhhhhh-hh-hcCC---c----hHHHH
Q 004491 551 NEVLPVVKEVPVLAGVCGTDPFRRVDYFLKQLESIGFFGVQNFPTVG---LFDGNFRQN-LE-ETGM---G----YGLEV 618 (749)
Q Consensus 551 ~eilp~v~~tPViaGv~atDP~~~~~~~l~~lk~~Gf~GV~NfPTvg---liDG~fR~~-LE-e~G~---g----y~~EV 618 (749)
+.|...++ .||+.=+-..-....+.+..+.+.+.|..||+=++|++ .||-.-++- +. ..+. + +...+
T Consensus 150 ~~v~~~~~-~Pv~vKlsp~~~~~~~a~~~~~~~~~g~~~i~~~nt~~~~~~iD~~~~~~~~~~~~~~GGlSG~~i~p~al 228 (310)
T PRK02506 150 EEVFTYFT-KPLGVKLPPYFDIVHFDQAAAIFNKFPLAFVNCINSIGNGLVIDPEDETVVIKPKNGFGGIGGDYIKPTAL 228 (310)
T ss_pred HHHHHhcC-CccEEecCCCCCHHHHHHHHHHhCcCceEEEEEeccCCCceEEecCCCCccccCCCCCCcCCchhccHHHH
Confidence 77777664 79998776432123344444556688999999999985 365322221 21 2222 1 35677
Q ss_pred HHHHHHHH-----cCCcccccccCHHHHHHHHhccCcEEEe
Q 004491 619 EMIDKAHK-----MGLLTTPYAFNEGEAVKMAKAGADIIVA 654 (749)
Q Consensus 619 emi~~A~~-----~gl~T~~yvf~~eqa~~Ma~AGaDiiv~ 654 (749)
++++..++ ..+.-+.=++|.++|.+|..||||.+=+
T Consensus 229 ~~v~~~~~~~~~~ipIig~GGI~s~~da~e~i~aGA~~Vqv 269 (310)
T PRK02506 229 ANVRAFYQRLNPSIQIIGTGGVKTGRDAFEHILCGASMVQV 269 (310)
T ss_pred HHHHHHHHhcCCCCCEEEECCCCCHHHHHHHHHcCCCHHhh
Confidence 78877765 3577888899999999999999998633
No 88
>PF04131 NanE: Putative N-acetylmannosamine-6-phosphate epimerase; InterPro: IPR007260 This family represents a putative ManNAc-6-P-to-GlcNAc-6P epimerase in the N-acetylmannosamine (ManNAc) utilization pathway found mainly in pathogenic bacteria for the reaction: N-acyl-D-glucosamine 6-phosphate = N-acyl-D-mannosamine 6-phosphate It is probably encoded by the yhcJ gene [].; GO: 0047465 N-acylglucosamine-6-phosphate 2-epimerase activity, 0006051 N-acetylmannosamine metabolic process; PDB: 1Y0E_B 3IGS_A 1YXY_A 3Q58_B.
Probab=94.78 E-value=0.13 Score=52.79 Aligned_cols=181 Identities=21% Similarity=0.246 Sum_probs=109.3
Q ss_pred hhhhhhhhcCCcEEEEeccccccccCCccccccccccCchHHHHHhhhhhcCCCCCCceEEeec----cCCCCCC-HHHH
Q 004491 504 ISAKFEEAGGVDLIVLYNSGRFRMAGRGSLAGLLPFADANAVVLEMANEVLPVVKEVPVLAGVC----GTDPFRR-VDYF 578 (749)
Q Consensus 504 lsAk~ae~gGaDli~~ynsGrfR~~G~~SlagllpygdaN~iv~e~~~eilp~v~~tPViaGv~----atDP~~~-~~~~ 578 (749)
..|++|+.|||-=|= ..| .++| ++|--.| +.|||.=+- .+|+|.- --+-
T Consensus 3 ~mA~Aa~~gGA~giR--------~~~------------~~dI-----~aik~~v-~lPIIGi~K~~y~~~~V~ITPT~~e 56 (192)
T PF04131_consen 3 RMAKAAEEGGAVGIR--------ANG------------VEDI-----RAIKKAV-DLPIIGIIKRDYPDSDVYITPTLKE 56 (192)
T ss_dssp HHHHHHHHCT-SEEE--------EES------------HHHH-----HHHHTTB--S-EEEE-B-SBTTSS--BS-SHHH
T ss_pred HHHHHHHHCCceEEE--------cCC------------HHHH-----HHHHHhc-CCCEEEEEeccCCCCCeEECCCHHH
Confidence 358899999987653 222 1121 2333344 689885433 3455532 2234
Q ss_pred HHHHHHcCccceecCCcccccchhhhhhhhhcCCchHHHHHHHHHHHHcCCcccccccCHHHHHHHHhccCcEEEeccCC
Q 004491 579 LKQLESIGFFGVQNFPTVGLFDGNFRQNLEETGMGYGLEVEMIDKAHKMGLLTTPYAFNEGEAVKMAKAGADIIVAHMGL 658 (749)
Q Consensus 579 l~~lk~~Gf~GV~NfPTvgliDG~fR~~LEe~G~gy~~EVemi~~A~~~gl~T~~yvf~~eqa~~Ma~AGaDiiv~h~Gl 658 (749)
.++|.+.|- .+--+|+..|..- . .=-|++++-|+++.+-|+=+-+.||++.-.++|+|+|..-+
T Consensus 57 v~~l~~aGa-------dIIAlDaT~R~Rp----~---~l~~li~~i~~~~~l~MADist~ee~~~A~~~G~D~I~TTL-- 120 (192)
T PF04131_consen 57 VDALAEAGA-------DIIALDATDRPRP----E---TLEELIREIKEKYQLVMADISTLEEAINAAELGFDIIGTTL-- 120 (192)
T ss_dssp HHHHHHCT--------SEEEEE-SSSS-S----S----HHHHHHHHHHCTSEEEEE-SSHHHHHHHHHTT-SEEE-TT--
T ss_pred HHHHHHcCC-------CEEEEecCCCCCC----c---CHHHHHHHHHHhCcEEeeecCCHHHHHHHHHcCCCEEEccc--
Confidence 566777775 4567899998876 1 22368888899999999999999999999999999987654
Q ss_pred CcccccccccccCHHHHHHHHHHHHHHHHHhCCCeEEEEccCCCCCHHHHHHHHhhCCCccEEecCcccccchHHHHHHH
Q 004491 659 TTSGSIGAKTALSLDESVDRVQAIADAAHRINPDAIVLCHGGPISSPSEAEFILKRTKGVHGFYGASSMERLPVEQAITS 738 (749)
Q Consensus 659 T~gG~~Ga~~~~sl~~~~~~~~~i~~aa~~~~pdii~l~hGGPi~~p~d~~~~l~~~~~~~Gf~g~Ss~ERlP~E~ai~~ 738 (749)
.|-...... -.--.+++.++.+ . ++-|++.| -|.+|+++...++. ++|.-+=||.+=|- ..
T Consensus 121 --sGYT~~t~~--~~pD~~lv~~l~~---~---~~pvIaEG-ri~tpe~a~~al~~--GA~aVVVGsAITrP------~~ 181 (192)
T PF04131_consen 121 --SGYTPYTKG--DGPDFELVRELVQ---A---DVPVIAEG-RIHTPEQAAKALEL--GAHAVVVGSAITRP------QE 181 (192)
T ss_dssp --TTSSTTSTT--SSHHHHHHHHHHH---T---TSEEEEES-S--SHHHHHHHHHT--T-SEEEE-HHHH-H------HH
T ss_pred --ccCCCCCCC--CCCCHHHHHHHHh---C---CCcEeecC-CCCCHHHHHHHHhc--CCeEEEECcccCCH------HH
Confidence 444443333 3344566666643 2 45577875 59999999999965 78999999988773 34
Q ss_pred HHHhhcc
Q 004491 739 TMRQYKS 745 (749)
Q Consensus 739 ~~~~FK~ 745 (749)
+|++|..
T Consensus 182 It~~F~~ 188 (192)
T PF04131_consen 182 ITKRFVD 188 (192)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5666643
No 89
>cd02940 DHPD_FMN Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN, and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass the dimer interface twice. Two of the Fe-S clusters show a hitherto unobserved coordination involving a glutamine residue.
Probab=94.74 E-value=0.74 Score=49.56 Aligned_cols=158 Identities=20% Similarity=0.161 Sum_probs=85.8
Q ss_pred hhcCCCCCCceEEeeccC-CCCCCHHHHHHHHHHcCcccee-cC--CcccccchhhhhhhhhcCCchHHHHHHHHHHHHc
Q 004491 552 EVLPVVKEVPVLAGVCGT-DPFRRVDYFLKQLESIGFFGVQ-NF--PTVGLFDGNFRQNLEETGMGYGLEVEMIDKAHKM 627 (749)
Q Consensus 552 eilp~v~~tPViaGv~at-DP~~~~~~~l~~lk~~Gf~GV~-Nf--PTvgliDG~fR~~LEe~G~gy~~EVemi~~A~~~ 627 (749)
+++....++|+|+-+++. || -++-++.+++.+.|+.+|. |+ |-.-.-.| +...|.+ -.++=.++++..++.
T Consensus 92 ~~~~~~~~~p~i~si~G~~~~-~~~~~~a~~~~~~gad~ielN~sCP~~~~~~~-~G~~l~~---~~~~~~~iv~~v~~~ 166 (299)
T cd02940 92 ELKKDFPDKILIASIMCEYNK-EDWTELAKLVEEAGADALELNFSCPHGMPERG-MGAAVGQ---DPELVEEICRWVREA 166 (299)
T ss_pred HHHhhCCCCeEEEEecCCCCH-HHHHHHHHHHHhcCCCEEEEECCCCCCCCCCC-Cchhhcc---CHHHHHHHHHHHHHh
Confidence 333333368999999998 88 4667777888888988886 66 65411111 1111111 112223445554442
Q ss_pred CCcccc-------cccCH-HHHHHHHhccCcEEEec------cCC---------------CcccccccccccCHHHHHHH
Q 004491 628 GLLTTP-------YAFNE-GEAVKMAKAGADIIVAH------MGL---------------TTSGSIGAKTALSLDESVDR 678 (749)
Q Consensus 628 gl~T~~-------yvf~~-eqa~~Ma~AGaDiiv~h------~Gl---------------T~gG~~Ga~~~~sl~~~~~~ 678 (749)
..+| +.-+. +-|+++.++|||-|+++ +++ -.||.-|... ..-+.+.
T Consensus 167 --~~~Pv~vKl~~~~~~~~~~a~~~~~~Gadgi~~~Nt~~~~~~id~~~~~~~~~~~~~~~~gg~sG~a~---~p~~l~~ 241 (299)
T cd02940 167 --VKIPVIAKLTPNITDIREIARAAKEGGADGVSAINTVNSLMGVDLDGTPPAPGVEGKTTYGGYSGPAV---KPIALRA 241 (299)
T ss_pred --cCCCeEEECCCCchhHHHHHHHHHHcCCCEEEEecccccccccccccCCccccccCCCCcCcccCCCc---chHHHHH
Confidence 1233 22222 55666789999999853 111 1233333211 1223334
Q ss_pred HHHHHHHHHHhCCCeEEEEccCCCCCHHHHHHHHhhCCCccEEecCc
Q 004491 679 VQAIADAAHRINPDAIVLCHGGPISSPSEAEFILKRTKGVHGFYGAS 725 (749)
Q Consensus 679 ~~~i~~aa~~~~pdii~l~hGGPi~~p~d~~~~l~~~~~~~Gf~g~S 725 (749)
+.++. +++.+++-++.-| -|.+++|+..++. .++++.-=+|
T Consensus 242 v~~~~---~~~~~~ipIig~G-GI~~~~da~~~l~--aGA~~V~i~t 282 (299)
T cd02940 242 VSQIA---RAPEPGLPISGIG-GIESWEDAAEFLL--LGASVVQVCT 282 (299)
T ss_pred HHHHH---HhcCCCCcEEEEC-CCCCHHHHHHHHH--cCCChheEce
Confidence 44443 3444565555555 5999999999994 5666544333
No 90
>PRK12738 kbaY tagatose-bisphosphate aldolase; Reviewed
Probab=94.72 E-value=0.84 Score=49.59 Aligned_cols=193 Identities=15% Similarity=0.221 Sum_probs=123.6
Q ss_pred ccHHHHHHHHHHHhhcCCCeEEeccccchhh----hhhhhcCCcEEEEeccccccccCCccccccccccCchHHHHHhhh
Q 004491 476 QRTQAILSKLKYQIDKGLPIIGAGAGTGISA----KFEEAGGVDLIVLYNSGRFRMAGRGSLAGLLPFADANAVVLEMAN 551 (749)
Q Consensus 476 ~~r~~il~~L~~~i~~~~piig~gaGtGlsA----k~ae~gGaDli~~ynsGrfR~~G~~SlagllpygdaN~iv~e~~~ 551 (749)
.+-+++|++ .-++|-.|...-.-.-.++ +.||+-++..||-.+.|.++..|...++ .++..+++
T Consensus 4 v~~k~iL~~---A~~~~yAV~AfN~~n~e~~~avi~AAee~~sPvIlq~s~~~~~~~~~~~~~---------~~~~~~a~ 71 (286)
T PRK12738 4 ISTKYLLQD---AQANGYAVPAFNIHNAETIQAILEVCSEMRSPVILAGTPGTFKHIALEEIY---------ALCSAYST 71 (286)
T ss_pred CcHHHHHHH---HHHCCceEEEEEeCCHHHHHHHHHHHHHHCCCEEEEcCcchhhhCCHHHHH---------HHHHHHHH
Confidence 344445433 3344555544444444444 4689999999999888887765544332 35666776
Q ss_pred hhcCCCCCCceEEeeccCCCCCCHHHHHHHHHHcCccceecCCcccccchh---hhhhhhhcCCchHHHHHHHHHHHHcC
Q 004491 552 EVLPVVKEVPVLAGVCGTDPFRRVDYFLKQLESIGFFGVQNFPTVGLFDGN---FRQNLEETGMGYGLEVEMIDKAHKMG 628 (749)
Q Consensus 552 eilp~v~~tPViaGv~atDP~~~~~~~l~~lk~~Gf~GV~NfPTvgliDG~---fR~~LEe~G~gy~~EVemi~~A~~~g 628 (749)
+. .+||.- -.|=-.+.+ .+++..+.||+.| +|||+ |.+|++.| -|+.+.||.+|
T Consensus 72 ~~-----~VPVal---HLDHg~~~e-~i~~ai~~GFtSV-------M~DgS~lp~eeNi~~T-------~evv~~Ah~~g 128 (286)
T PRK12738 72 TY-----NMPLAL---HLDHHESLD-DIRRKVHAGVRSA-------MIDGSHFPFAENVKLV-------KSVVDFCHSQD 128 (286)
T ss_pred HC-----CCCEEE---ECCCCCCHH-HHHHHHHcCCCeE-------eecCCCCCHHHHHHHH-------HHHHHHHHHcC
Confidence 53 368753 345555666 5555667899776 67874 66666543 34566677655
Q ss_pred Ccc-------------------cccccCHHHHHHHHh-ccCcEEEeccCCCcccccccccccCHHHHHHHHHHHHHHHHH
Q 004491 629 LLT-------------------TPYAFNEGEAVKMAK-AGADIIVAHMGLTTSGSIGAKTALSLDESVDRVQAIADAAHR 688 (749)
Q Consensus 629 l~T-------------------~~yvf~~eqa~~Ma~-AGaDiiv~h~GlT~gG~~Ga~~~~sl~~~~~~~~~i~~aa~~ 688 (749)
+.. -.+-.++|||+++.+ -|+|.|-+-+|-..|-..+ ...|+ .+++++|.++.
T Consensus 129 v~VEaElG~igg~ed~~~~~~~~~~~T~peea~~Fv~~TgvD~LAvaiGt~HG~Y~~---~p~Ld--fd~l~~I~~~~-- 201 (286)
T PRK12738 129 CSVEAELGRLGGVEDDMSVDAESAFLTDPQEAKRFVELTGVDSLAVAIGTAHGLYSK---TPKID--FQRLAEIREVV-- 201 (286)
T ss_pred CeEEEEEEeeCCccCCcccccchhcCCCHHHHHHHHHHhCCCEEEeccCcccCCCCC---CCcCC--HHHHHHHHHHh--
Confidence 421 123458999999986 5999999999977776653 22233 45778886654
Q ss_pred hCCCeEEEEccCCCCCHHHHHHHHh
Q 004491 689 INPDAIVLCHGGPISSPSEAEFILK 713 (749)
Q Consensus 689 ~~pdii~l~hGGPi~~p~d~~~~l~ 713 (749)
++-+..|||-=...++++...+
T Consensus 202 ---~vPLVLHGgSG~~~e~~~kai~ 223 (286)
T PRK12738 202 ---DVPLVLHGASDVPDEFVRRTIE 223 (286)
T ss_pred ---CCCEEEeCCCCCCHHHHHHHHH
Confidence 4555679996666888887653
No 91
>cd04741 DHOD_1A_like Dihydroorotate dehydrogenase (DHOD) class 1A FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=94.69 E-value=0.54 Score=50.65 Aligned_cols=172 Identities=17% Similarity=0.132 Sum_probs=103.4
Q ss_pred HHHHHHHHHHHhh----cCCCeEEecccc-ch----hhhhhhhc--CCcEEEEeccccccccCCccccccccccCchHHH
Q 004491 478 TQAILSKLKYQID----KGLPIIGAGAGT-GI----SAKFEEAG--GVDLIVLYNSGRFRMAGRGSLAGLLPFADANAVV 546 (749)
Q Consensus 478 r~~il~~L~~~i~----~~~piig~gaGt-Gl----sAk~ae~g--GaDli~~ynsGrfR~~G~~SlagllpygdaN~iv 546 (749)
-++.+++|++..+ .++|++.--.|. .- ..+.++.+ |+|.|-+ |-+-==..|.+ .++..=+.+
T Consensus 73 ~~~~~~~i~~~~~~~~~~~~pvivsi~g~~~~~~~~~~~~~~~~~~~ad~iel-N~sCPn~~~~~------~~~~~~~~~ 145 (294)
T cd04741 73 LDYYLEYIRTISDGLPGSAKPFFISVTGSAEDIAAMYKKIAAHQKQFPLAMEL-NLSCPNVPGKP------PPAYDFDAT 145 (294)
T ss_pred HHHHHHHHHHHhhhccccCCeEEEECCCCHHHHHHHHHHHHhhccccccEEEE-ECCCCCCCCcc------cccCCHHHH
Confidence 4556666665433 367877755554 11 22333445 8997765 32210012222 334344677
Q ss_pred HHhhhhhcCCCCCCceEEeeccCCCCCCHHHHHHHHHHc--CccceecCCccc---ccch-hhhhhhh-hcCC---c---
Q 004491 547 LEMANEVLPVVKEVPVLAGVCGTDPFRRVDYFLKQLESI--GFFGVQNFPTVG---LFDG-NFRQNLE-ETGM---G--- 613 (749)
Q Consensus 547 ~e~~~eilp~v~~tPViaGv~atDP~~~~~~~l~~lk~~--Gf~GV~NfPTvg---liDG-~fR~~LE-e~G~---g--- 613 (749)
.++.+.|-..+ ++||+.=+-....-.++.++.+.+.+. |.+||+=+=|++ .||. +-+-.|. ..|. +
T Consensus 146 ~~i~~~v~~~~-~iPv~vKl~p~~~~~~~~~~a~~l~~~~~G~~gi~~~Nt~~~~~~id~~~~~~~~~~~~~~gG~SG~~ 224 (294)
T cd04741 146 LEYLTAVKAAY-SIPVGVKTPPYTDPAQFDTLAEALNAFACPISFITATNTLGNGLVLDPERETVVLKPKTGFGGLAGAY 224 (294)
T ss_pred HHHHHHHHHhc-CCCEEEEeCCCCCHHHHHHHHHHHhccccCCcEEEEEccCCccccccCCCCCcccCCCCCCCCcCchh
Confidence 77776665555 489998876533223567788888888 899999666774 3665 2232332 2333 2
Q ss_pred -hHHHHHHHHHHHH-----cCCcccccccCHHHHHHHHhccCcEEEeccC
Q 004491 614 -YGLEVEMIDKAHK-----MGLLTTPYAFNEGEAVKMAKAGADIIVAHMG 657 (749)
Q Consensus 614 -y~~EVemi~~A~~-----~gl~T~~yvf~~eqa~~Ma~AGaDiiv~h~G 657 (749)
...=++++++.++ ..+.-+.=++|.++|.+|.+||||.+=+--+
T Consensus 225 i~~~al~~v~~~~~~~~~~ipIig~GGI~s~~da~e~l~aGA~~Vqv~ta 274 (294)
T cd04741 225 LHPLALGNVRTFRRLLPSEIQIIGVGGVLDGRGAFRMRLAGASAVQVGTA 274 (294)
T ss_pred hHHHHHHHHHHHHHhcCCCCCEEEeCCCCCHHHHHHHHHcCCCceeEchh
Confidence 3344455665544 4577778899999999999999998765544
No 92
>cd00947 TBP_aldolase_IIB Tagatose-1,6-bisphosphate (TBP) aldolase and related Type B Class II aldolases. TBP aldolase is a tetrameric class II aldolase that catalyzes the reversible condensation of dihydroxyacetone phosphate with glyceraldehyde 3-phsophate to produce tagatose 1,6-bisphosphate. There is an absolute requirement for a divalent metal ion, usually zinc, and in addition the enzymes are activated by monovalent cations such as Na+. The type A and type B Class II FBPA's differ in the presence and absence of distinct indels in the sequence that result in differing loop lengths in the structures.
Probab=94.69 E-value=0.23 Score=53.61 Aligned_cols=167 Identities=23% Similarity=0.346 Sum_probs=111.1
Q ss_pred hhhhhcCCcEEEEeccccccccCCccccccccccCchHHHHHhhhhhcCCCCCCceEEeeccCCCCCCHHHHHHHHHHcC
Q 004491 507 KFEEAGGVDLIVLYNSGRFRMAGRGSLAGLLPFADANAVVLEMANEVLPVVKEVPVLAGVCGTDPFRRVDYFLKQLESIG 586 (749)
Q Consensus 507 k~ae~gGaDli~~ynsGrfR~~G~~SlagllpygdaN~iv~e~~~eilp~v~~tPViaGv~atDP~~~~~~~l~~lk~~G 586 (749)
+.||+-++.+||-...+-.+ ++++...=.++.+++++. .+||.-=+ |=..+. .++.+..+.|
T Consensus 31 ~AAe~~~sPvIi~~~~~~~~---------~~~~~~~~~~~~~~a~~~-----~VPV~lHL---DH~~~~-~~i~~ai~~G 92 (276)
T cd00947 31 EAAEETRSPVILQISEGAIK---------YAGLELLVAMVKAAAERA-----SVPVALHL---DHGSSF-ELIKRAIRAG 92 (276)
T ss_pred HHHHHhCCCEEEEcCcchhh---------hCCHHHHHHHHHHHHHHC-----CCCEEEEC---CCCCCH-HHHHHHHHhC
Confidence 56889999999987666544 334444555666676553 46865433 333444 4455666789
Q ss_pred ccceecCCcccccchh---hhhhhhhcCCchHHHHHHHHHHHHcCCcc------c-----------ccccCHHHHHHHHh
Q 004491 587 FFGVQNFPTVGLFDGN---FRQNLEETGMGYGLEVEMIDKAHKMGLLT------T-----------PYAFNEGEAVKMAK 646 (749)
Q Consensus 587 f~GV~NfPTvgliDG~---fR~~LEe~G~gy~~EVemi~~A~~~gl~T------~-----------~yvf~~eqa~~Ma~ 646 (749)
|+.| +|||+ |.+|++.| -+..+.||.+|+.- + ..-.++|||+++.+
T Consensus 93 ftSV-------MiD~S~l~~eeNi~~t-------~~vv~~ah~~gv~VEaElG~i~g~e~~~~~~~~~~T~pe~a~~Fv~ 158 (276)
T cd00947 93 FSSV-------MIDGSHLPFEENVAKT-------KEVVELAHAYGVSVEAELGRIGGEEDGVVGDEGLLTDPEEAEEFVE 158 (276)
T ss_pred CCEE-------EeCCCCCCHHHHHHHH-------HHHHHHHHHcCCeEEEEEeeecCccCCcccccccCCCHHHHHHHHH
Confidence 8776 67875 66666543 45566777765421 1 12347899999986
Q ss_pred -ccCcEEEeccCCCcccccccccccCHHHHHHHHHHHHHHHHHhCCCeEEEEccCCCCCHHHHHHHHhh
Q 004491 647 -AGADIIVAHMGLTTSGSIGAKTALSLDESVDRVQAIADAAHRINPDAIVLCHGGPISSPSEAEFILKR 714 (749)
Q Consensus 647 -AGaDiiv~h~GlT~gG~~Ga~~~~sl~~~~~~~~~i~~aa~~~~pdii~l~hGGPi~~p~d~~~~l~~ 714 (749)
-|+|.|-+-+|-..|--.+.+..+.++ ++.+|.++. ++-+..|||-=...++++...+.
T Consensus 159 ~TgvD~LAvsiGt~HG~Y~~~~p~L~~~----~L~~i~~~~-----~vPLVlHGgSG~~~e~~~~ai~~ 218 (276)
T cd00947 159 ETGVDALAVAIGTSHGAYKGGEPKLDFD----RLKEIAERV-----NVPLVLHGGSGIPDEQIRKAIKL 218 (276)
T ss_pred HHCCCEEEeccCccccccCCCCCccCHH----HHHHHHHHh-----CCCEEEeCCCCCCHHHHHHHHHc
Confidence 599999999998888776644456655 666776665 46667899977777888877643
No 93
>COG0134 TrpC Indole-3-glycerol phosphate synthase [Amino acid transport and metabolism]
Probab=94.68 E-value=0.14 Score=54.57 Aligned_cols=178 Identities=27% Similarity=0.376 Sum_probs=117.9
Q ss_pred hhhhhhcCCcEEEEeccccccccCCccccccccccCchHHHHHhhhhhcCCCCCCceEEeeccCCCCCCHHHHHHHHHHc
Q 004491 506 AKFEEAGGVDLIVLYNSGRFRMAGRGSLAGLLPFADANAVVLEMANEVLPVVKEVPVLAGVCGTDPFRRVDYFLKQLESI 585 (749)
Q Consensus 506 Ak~ae~gGaDli~~ynsGrfR~~G~~SlagllpygdaN~iv~e~~~eilp~v~~tPViaGv~atDP~~~~~~~l~~lk~~ 585 (749)
|+.=+++||+-|=++--..| |.-+.+.+. .+--.| +.|||+ -|+..+ +..+.+-+.+
T Consensus 72 a~~Ye~~GAa~iSVLTd~~~-------------F~Gs~e~L~----~v~~~v-~~PvL~----KDFiiD-~yQI~~Ar~~ 128 (254)
T COG0134 72 AKAYEEGGAAAISVLTDPKY-------------FQGSFEDLR----AVRAAV-DLPVLR----KDFIID-PYQIYEARAA 128 (254)
T ss_pred HHHHHHhCCeEEEEecCccc-------------cCCCHHHHH----HHHHhc-CCCeee----ccCCCC-HHHHHHHHHc
Confidence 77889999999988764444 333444443 222223 467665 454444 4456777788
Q ss_pred CccceecCCcccccchhhhhhhhhcCCchHHHHHHHHHHHHcCCcccccccCHHHHHHHHhccCcEEEec-cCCCccccc
Q 004491 586 GFFGVQNFPTVGLFDGNFRQNLEETGMGYGLEVEMIDKAHKMGLLTTPYAFNEGEAVKMAKAGADIIVAH-MGLTTSGSI 664 (749)
Q Consensus 586 Gf~GV~NfPTvgliDG~fR~~LEe~G~gy~~EVemi~~A~~~gl~T~~yvf~~eqa~~Ma~AGaDiiv~h-~GlT~gG~~ 664 (749)
|=.-|. ||-. .| +.++=-|+...|+++||=.+-=|.|++|.++..++|++||=++ =.|+
T Consensus 129 GADavL------LI~~----~L-----~~~~l~el~~~A~~LGm~~LVEVh~~eEl~rAl~~ga~iIGINnRdL~----- 188 (254)
T COG0134 129 GADAVL------LIVA----AL-----DDEQLEELVDRAHELGMEVLVEVHNEEELERALKLGAKIIGINNRDLT----- 188 (254)
T ss_pred CcccHH------HHHH----hc-----CHHHHHHHHHHHHHcCCeeEEEECCHHHHHHHHhCCCCEEEEeCCCcc-----
Confidence 876553 2222 22 1222257899999999999999999999999999999998433 3333
Q ss_pred ccccccCHHHHHHHHHHHHHHHHHhCCCeEEEEccCCCCCHHHHHHHHhhCCCccEEecCcccccch-HHHHHHH
Q 004491 665 GAKTALSLDESVDRVQAIADAAHRINPDAIVLCHGGPISSPSEAEFILKRTKGVHGFYGASSMERLP-VEQAITS 738 (749)
Q Consensus 665 Ga~~~~sl~~~~~~~~~i~~aa~~~~pdii~l~hGGPi~~p~d~~~~l~~~~~~~Gf~g~Ss~ERlP-~E~ai~~ 738 (749)
|++--.+..+++ +..+.+|+++..-.| |.+|+|++++.+. +++||.=|+|+=|=| ++.++.+
T Consensus 189 ------tf~vdl~~t~~l---a~~~p~~~~~IsESG-I~~~~dv~~l~~~--ga~a~LVG~slM~~~~~~~a~~~ 251 (254)
T COG0134 189 ------TLEVDLETTEKL---APLIPKDVILISESG-ISTPEDVRRLAKA--GADAFLVGEALMRADDPEEALRE 251 (254)
T ss_pred ------hheecHHHHHHH---HhhCCCCcEEEecCC-CCCHHHHHHHHHc--CCCEEEecHHHhcCCCHHHHHHH
Confidence 333334444555 556677777776655 9999999999854 689998887765544 4666554
No 94
>PRK13399 fructose-1,6-bisphosphate aldolase; Provisional
Probab=94.56 E-value=0.61 Score=51.93 Aligned_cols=158 Identities=22% Similarity=0.323 Sum_probs=99.3
Q ss_pred hhhhhcCCcEEEEeccccccccCCccccccccccCchHHHHHhhhhhcCCCCCCceEEeeccCCCCCCHHHHHHHHHHcC
Q 004491 507 KFEEAGGVDLIVLYNSGRFRMAGRGSLAGLLPFADANAVVLEMANEVLPVVKEVPVLAGVCGTDPFRRVDYFLKQLESIG 586 (749)
Q Consensus 507 k~ae~gGaDli~~ynsGrfR~~G~~SlagllpygdaN~iv~e~~~eilp~v~~tPViaGv~atDP~~~~~~~l~~lk~~G 586 (749)
++||+-++.+||-...|..+..|.. ..=.++..++++ .+++||.- -.|=-.+.+ ++++..+.|
T Consensus 36 ~AAEe~~sPvIlq~s~~~~~~~g~~---------~~~~~v~~~ae~----~~~VPVaL---HLDHg~~~e-~i~~Ai~~G 98 (347)
T PRK13399 36 EAAEATDSPVILQASRGARKYAGDA---------MLRHMVLAAAEM----YPDIPICL---HQDHGNSPA-TCQSAIRSG 98 (347)
T ss_pred HHHHHhCCCEEEECCcchhhhCCHH---------HHHHHHHHHHHh----cCCCcEEE---ECCCCCCHH-HHHHHHhcC
Confidence 5789999999998887766554422 222334444443 22357653 344444554 466677789
Q ss_pred ccceecCCcccccchh----------hhhhhhhcCCchHHHHHHHHHHHHcCCcc-------------------------
Q 004491 587 FFGVQNFPTVGLFDGN----------FRQNLEETGMGYGLEVEMIDKAHKMGLLT------------------------- 631 (749)
Q Consensus 587 f~GV~NfPTvgliDG~----------fR~~LEe~G~gy~~EVemi~~A~~~gl~T------------------------- 631 (749)
|+.| +|||+ |.+|++.| -|..+.||..|+..
T Consensus 99 FtSV-------MiDgS~l~~~~~~~~~eeNI~~T-------revve~Ah~~GvsVEaELG~igg~e~~~~g~ed~~~~~~ 164 (347)
T PRK13399 99 FTSV-------MMDGSLLADGKTPASYDYNVDVT-------RRVTEMAHAVGVSVEGELGCLGSLETGEAGEEDGVGAEG 164 (347)
T ss_pred CCEE-------EEeCCCCCCCCCccCHHHHHHHH-------HHHHHHHHHcCCeEEEEeeeccCcccccccccCCccccc
Confidence 8766 89998 77777654 34456677555321
Q ss_pred ----cccccCHHHHHHHHh-ccCcEEEeccCCCccccccc-ccc-cCHHHHHHHHHHHHHHHHHhCCCeEEEEccCC
Q 004491 632 ----TPYAFNEGEAVKMAK-AGADIIVAHMGLTTSGSIGA-KTA-LSLDESVDRVQAIADAAHRINPDAIVLCHGGP 701 (749)
Q Consensus 632 ----~~yvf~~eqa~~Ma~-AGaDiiv~h~GlT~gG~~Ga-~~~-~sl~~~~~~~~~i~~aa~~~~pdii~l~hGGP 701 (749)
-.+..+++||+.+.+ -|+|.|-+=+|-..|-..+- +.. .-|+ .+++++|.++. +++-+..|||-
T Consensus 165 ~~~~~~~~T~PeeA~~Fv~~TgvD~LAvaiGt~HG~Yk~~~~p~~~~L~--~drl~eI~~~v----~~vPLVLHGgS 235 (347)
T PRK13399 165 KLSHDQMLTDPDQAVDFVQRTGVDALAIAIGTSHGAYKFTRKPDGDILA--IDRIEEIHARL----PNTHLVMHGSS 235 (347)
T ss_pred cccccccCCCHHHHHHHHHHHCcCEEhhhhccccCCcCCCCCCChhhcc--HHHHHHHHhhc----CCCCEEEeCCC
Confidence 123557899999986 59999999998777766552 111 1133 45677776554 45656779984
No 95
>COG2070 Dioxygenases related to 2-nitropropane dioxygenase [General function prediction only]
Probab=94.51 E-value=0.097 Score=57.71 Aligned_cols=100 Identities=24% Similarity=0.368 Sum_probs=75.3
Q ss_pred HHHHHHHHHHcCCcccccccCHHHHHHHHhccCcEEEeccCCCccccccc-ccccCHHHHHHHHHHHHHHHHHhCCCeEE
Q 004491 617 EVEMIDKAHKMGLLTTPYAFNEGEAVKMAKAGADIIVAHMGLTTSGSIGA-KTALSLDESVDRVQAIADAAHRINPDAIV 695 (749)
Q Consensus 617 EVemi~~A~~~gl~T~~yvf~~eqa~~Ma~AGaDiiv~h~GlT~gG~~Ga-~~~~sl~~~~~~~~~i~~aa~~~~pdii~ 695 (749)
.-+.|+..|..|..-++=|-++.+|+++.++|+|.||++ |-..||..|. ....+ ...++++|.++.+. |-|
T Consensus 116 ~~~~i~~~~~~g~~v~~~v~~~~~A~~~~~~G~d~vI~~-g~eAGGH~g~~~~~~~---t~~Lv~ev~~~~~~----iPV 187 (336)
T COG2070 116 PAEFVARLKAAGIKVIHSVITVREALKAERAGADAVIAQ-GAEAGGHRGGVDLEVS---TFALVPEVVDAVDG----IPV 187 (336)
T ss_pred cHHHHHHHHHcCCeEEEEeCCHHHHHHHHhCCCCEEEec-CCcCCCcCCCCCCCcc---HHHHHHHHHHHhcC----CCE
Confidence 345677778899999999999999999999999999997 6678999887 11223 34556777666554 556
Q ss_pred EEccCCCCCHHHHHHHHhhCCCccEEecCccc
Q 004491 696 LCHGGPISSPSEAEFILKRTKGVHGFYGASSM 727 (749)
Q Consensus 696 l~hGGPi~~p~d~~~~l~~~~~~~Gf~g~Ss~ 727 (749)
++-|| |.+++++...|.- +.+|-+-||-|
T Consensus 188 iAAGG-I~dg~~i~AAlal--GA~gVq~GT~F 216 (336)
T COG2070 188 IAAGG-IADGRGIAAALAL--GADGVQMGTRF 216 (336)
T ss_pred EEecC-ccChHHHHHHHHh--ccHHHHhhhhh
Confidence 66655 9999999999853 55676666544
No 96
>TIGR03572 WbuZ glycosyl amidation-associated protein WbuZ. This clade of sequences is highly similar to the HisF protein, but generally represents the second HisF homolog in the genome where the other is an authentic HisF observed in the context of a complete histidine biosynthesis operon. The similarity between these WbuZ sequences and true HisFs is such that often the closest match by BLAST of a WbuZ is a HisF. Only by making a multiple sequence alignment is the homology relationship among the WbuZ sequences made apparent. WbuZ genes are invariably observed in the presence of a homolog of the HisH protein (designated WbuY) and a proposed N-acetyl sugar amidotransferase designated in WbuX in E. coli, IfnA in P. aeriginosa and PseA in C. jejuni. Similarly, this trio of genes is invariably found in the context of saccharide biosynthesis loci. It has been shown that the WbuYZ homologs are not essential components of the activity expressed by WbuX, leading to the proposal that these to pr
Probab=94.45 E-value=1.2 Score=45.69 Aligned_cols=75 Identities=17% Similarity=0.232 Sum_probs=51.7
Q ss_pred HHHHHHHHhccCcEEEeccCCCcccccccccccCHHHHHHHHHHHHHHHHHhCCCeEEEEccCCCCCHHHHHHHHhhCCC
Q 004491 638 EGEAVKMAKAGADIIVAHMGLTTSGSIGAKTALSLDESVDRVQAIADAAHRINPDAIVLCHGGPISSPSEAEFILKRTKG 717 (749)
Q Consensus 638 ~eqa~~Ma~AGaDiiv~h~GlT~gG~~Ga~~~~sl~~~~~~~~~i~~aa~~~~pdii~l~hGGPi~~p~d~~~~l~~~~~ 717 (749)
.+.++++.++|+|.|++| +.+..|+. .... .+.++++.+. + + +-++.+|-|.+++|++.++++ .+
T Consensus 156 ~~~~~~~~~~G~d~i~i~-~i~~~g~~---~g~~----~~~~~~i~~~---~--~-ipvia~GGi~s~~di~~~l~~-~g 220 (232)
T TIGR03572 156 VEWAREAEQLGAGEILLN-SIDRDGTM---KGYD----LELIKTVSDA---V--S-IPVIALGGAGSLDDLVEVALE-AG 220 (232)
T ss_pred HHHHHHHHHcCCCEEEEe-CCCccCCc---CCCC----HHHHHHHHhh---C--C-CCEEEECCCCCHHHHHHHHHH-cC
Confidence 477889999999999988 46665541 2222 3334444332 2 2 335556779999999998877 68
Q ss_pred ccEEecCccc
Q 004491 718 VHGFYGASSM 727 (749)
Q Consensus 718 ~~Gf~g~Ss~ 727 (749)
++|..=+|+|
T Consensus 221 adgV~vg~a~ 230 (232)
T TIGR03572 221 ASAVAAASLF 230 (232)
T ss_pred CCEEEEehhh
Confidence 9999988875
No 97
>cd00945 Aldolase_Class_I Class I aldolases. The class I aldolases use an active-site lysine which stablilzes a reaction intermediates via Schiff base formation, and have TIM beta/alpha barrel fold. The members of this family include 2-keto-3-deoxy-6-phosphogluconate (KDPG) and 2-keto-4-hydroxyglutarate (KHG) aldolases, transaldolase, dihydrodipicolinate synthase sub-family, Type I 3-dehydroquinate dehydratase, DeoC and DhnA proteins, and metal-independent fructose-1,6-bisphosphate aldolase. Although structurally similar, the class II aldolases use a different mechanism and are believed to have an independent evolutionary origin.
Probab=94.42 E-value=0.93 Score=44.00 Aligned_cols=149 Identities=18% Similarity=0.131 Sum_probs=89.2
Q ss_pred HHHHHHHHHhhc-CCCeE-Eeccccc--------hhhhhhhhcCCcEEEEeccccccccCCccccccccccCchHHHHHh
Q 004491 480 AILSKLKYQIDK-GLPII-GAGAGTG--------ISAKFEEAGGVDLIVLYNSGRFRMAGRGSLAGLLPFADANAVVLEM 549 (749)
Q Consensus 480 ~il~~L~~~i~~-~~pii-g~gaGtG--------lsAk~ae~gGaDli~~ynsGrfR~~G~~SlagllpygdaN~iv~e~ 549 (749)
++++..++..+. +.|++ |++.+++ -.+|.+++.|||.|++.-.-.|+..+ | .+-+.+.
T Consensus 35 ~~i~~~~~~~~~~~~~v~~~v~~~~~~~~~~~~~~~a~~a~~~Gad~i~v~~~~~~~~~~-----------~-~~~~~~~ 102 (201)
T cd00945 35 GYVRLAADALAGSDVPVIVVVGFPTGLTTTEVKVAEVEEAIDLGADEIDVVINIGSLKEG-----------D-WEEVLEE 102 (201)
T ss_pred HHHHHHHHHhCCCCCeEEEEecCCCCCCcHHHHHHHHHHHHHcCCCEEEEeccHHHHhCC-----------C-HHHHHHH
Confidence 788888888776 56644 4444432 25788999999999986433333322 2 3555555
Q ss_pred hhhhcCCC-CCCceEEeeccCCCCCC---HHHHHHHHHHcCccceecCCcccccchhhhhhhhhcCCchHHHHHHHHHHH
Q 004491 550 ANEVLPVV-KEVPVLAGVCGTDPFRR---VDYFLKQLESIGFFGVQNFPTVGLFDGNFRQNLEETGMGYGLEVEMIDKAH 625 (749)
Q Consensus 550 ~~eilp~v-~~tPViaGv~atDP~~~---~~~~l~~lk~~Gf~GV~NfPTvgliDG~fR~~LEe~G~gy~~EVemi~~A~ 625 (749)
.++|.-.+ .+.||+.-...... .. +..+.+.+++.|+.+|-.++.-. . .+..+ ..+..|+++.
T Consensus 103 ~~~i~~~~~~~~pv~iy~~p~~~-~~~~~~~~~~~~~~~~g~~~iK~~~~~~--~---------~~~~~-~~~~~i~~~~ 169 (201)
T cd00945 103 IAAVVEAADGGLPLKVILETRGL-KTADEIAKAARIAAEAGADFIKTSTGFG--G---------GGATV-EDVKLMKEAV 169 (201)
T ss_pred HHHHHHHhcCCceEEEEEECCCC-CCHHHHHHHHHHHHHhCCCEEEeCCCCC--C---------CCCCH-HHHHHHHHhc
Confidence 55555554 46899888653322 22 33333446789999998776321 1 12222 3344444443
Q ss_pred --HcCCcccccccCHHHHHHHHhccCcEEE
Q 004491 626 --KMGLLTTPYAFNEGEAVKMAKAGADIIV 653 (749)
Q Consensus 626 --~~gl~T~~yvf~~eqa~~Ma~AGaDiiv 653 (749)
...+....-..+.+++....++|||-++
T Consensus 170 ~~~~~v~~~gg~~~~~~~~~~~~~Ga~g~~ 199 (201)
T cd00945 170 GGRVGVKAAGGIKTLEDALAAIEAGADGIG 199 (201)
T ss_pred ccCCcEEEECCCCCHHHHHHHHHhccceee
Confidence 2345444444556999999999999775
No 98
>PRK13802 bifunctional indole-3-glycerol phosphate synthase/tryptophan synthase subunit beta; Provisional
Probab=94.42 E-value=0.11 Score=62.34 Aligned_cols=172 Identities=21% Similarity=0.261 Sum_probs=117.1
Q ss_pred hhhhhhhcCCcEEEEeccccccccCCccccccccccCchHHHHHhhhhhcCCCCCCceEEeeccCCCCCCHHHHHHHHHH
Q 004491 505 SAKFEEAGGVDLIVLYNSGRFRMAGRGSLAGLLPFADANAVVLEMANEVLPVVKEVPVLAGVCGTDPFRRVDYFLKQLES 584 (749)
Q Consensus 505 sAk~ae~gGaDli~~ynsGrfR~~G~~SlagllpygdaN~iv~e~~~eilp~v~~tPViaGv~atDP~~~~~~~l~~lk~ 584 (749)
.|+.=+.+||+-|=++--.+| |+-+.+-+.+..+. | ++|||. -|...+- .-+.+-+.
T Consensus 75 ~a~~y~~~GA~aiSVlTe~~~-------------F~Gs~~~l~~vr~~----v-~~PvLr----KDFIid~-~QI~ea~~ 131 (695)
T PRK13802 75 LAREYEQGGASAISVLTEGRR-------------FLGSLDDFDKVRAA----V-HIPVLR----KDFIVTD-YQIWEARA 131 (695)
T ss_pred HHHHHHHcCCcEEEEecCcCc-------------CCCCHHHHHHHHHh----C-CCCEEe----ccccCCH-HHHHHHHH
Confidence 466778899999988877666 55566655555443 2 467764 4554443 44667788
Q ss_pred cCccceecCCcccccchhhh-hhhhhcCCchHHHHHHHHHHHHcCCcccccccCHHHHHHHHhccCcEEEeccCCCcccc
Q 004491 585 IGFFGVQNFPTVGLFDGNFR-QNLEETGMGYGLEVEMIDKAHKMGLLTTPYAFNEGEAVKMAKAGADIIVAHMGLTTSGS 663 (749)
Q Consensus 585 ~Gf~GV~NfPTvgliDG~fR-~~LEe~G~gy~~EVemi~~A~~~gl~T~~yvf~~eqa~~Ma~AGaDiiv~h~GlT~gG~ 663 (749)
+|=..|. ||-.-+- +.| -++++.|+++||=.+-=|.|++|..+..++||+||.++-
T Consensus 132 ~GADavL------LI~~~L~~~~l----------~~l~~~a~~lGme~LvEvh~~~el~~a~~~ga~iiGINn------- 188 (695)
T PRK13802 132 HGADLVL------LIVAALDDAQL----------KHLLDLAHELGMTVLVETHTREEIERAIAAGAKVIGINA------- 188 (695)
T ss_pred cCCCEee------hhHhhcCHHHH----------HHHHHHHHHcCCeEEEEeCCHHHHHHHHhCCCCEEEEeC-------
Confidence 8887764 3322221 223 368999999999999999999999999999999996652
Q ss_pred cccccccCHHHHHHHHHHHHHHHHHhCCCeEEEEccCCCCCHHHHHHHHhhCCCccEEecCcccccch
Q 004491 664 IGAKTALSLDESVDRVQAIADAAHRINPDAIVLCHGGPISSPSEAEFILKRTKGVHGFYGASSMERLP 731 (749)
Q Consensus 664 ~Ga~~~~sl~~~~~~~~~i~~aa~~~~pdii~l~hGGPi~~p~d~~~~l~~~~~~~Gf~g~Ss~ERlP 731 (749)
.+-.|++--.+...++. ..+.++++++.-+| |.+|+|++++.+ .++|||.=|+|+=|=|
T Consensus 189 ---RdL~tf~vd~~~t~~L~---~~ip~~~~~VsESG-I~~~~d~~~l~~--~G~davLIGeslm~~~ 247 (695)
T PRK13802 189 ---RNLKDLKVDVNKYNELA---ADLPDDVIKVAESG-VFGAVEVEDYAR--AGADAVLVGEGVATAD 247 (695)
T ss_pred ---CCCccceeCHHHHHHHH---hhCCCCcEEEEcCC-CCCHHHHHHHHH--CCCCEEEECHHhhCCC
Confidence 12223333343444442 33456777676655 999999999984 4689998877765544
No 99
>PRK15063 isocitrate lyase; Provisional
Probab=94.40 E-value=1.2 Score=51.01 Aligned_cols=106 Identities=24% Similarity=0.237 Sum_probs=75.0
Q ss_pred HHHHHHHhhcCCCeEEeccccchhhhhhhhcCCcEEEEeccccccccCC-------ccccccccccCchHHHHHhhhhh-
Q 004491 482 LSKLKYQIDKGLPIIGAGAGTGISAKFEEAGGVDLIVLYNSGRFRMAGR-------GSLAGLLPFADANAVVLEMANEV- 553 (749)
Q Consensus 482 l~~L~~~i~~~~piig~gaGtGlsAk~ae~gGaDli~~ynsGrfR~~G~-------~SlagllpygdaN~iv~e~~~ei- 553 (749)
-++|++.++++.++..-|+=.|++|+..++.|.|-| |=|| +-.+.. .+=.+++||..--+.|..+.+-+
T Consensus 52 a~kLr~lL~~~~~~~~~Ga~d~~~A~q~~~aGf~AI--y~SG-~~vAa~~~~s~~g~PD~~l~p~~~v~~~v~~I~~a~~ 128 (428)
T PRK15063 52 AEKLWELLHGEPYVNALGALTGNQAVQQVKAGLKAI--YLSG-WQVAADANLAGQMYPDQSLYPANSVPAVVKRINNALR 128 (428)
T ss_pred HHHHHHHHhCCCcEEecCCCCHHHHHHHHHhCCCEE--EECH-HHHhcCcccccCCCCCcccCCHHHHHHHHHHHHHHHH
Confidence 358999999999999999999999999999998865 4455 222221 11236777777666666665332
Q ss_pred -----------cCCCC-CCceEEeecc--CCCCCCHHHHHHHHHHcCcccee
Q 004491 554 -----------LPVVK-EVPVLAGVCG--TDPFRRVDYFLKQLESIGFFGVQ 591 (749)
Q Consensus 554 -----------lp~v~-~tPViaGv~a--tDP~~~~~~~l~~lk~~Gf~GV~ 591 (749)
.|.+. .+|||+=.-+ .+|. +..+..+++.+.|.+||+
T Consensus 129 ~~d~~~~~~~~~~~~d~~~PIiADaDtGfGg~~-nv~~~vk~~ieAGaAGIh 179 (428)
T PRK15063 129 RADQIQWSEGDKGYIDYFAPIVADAEAGFGGVL-NAFELMKAMIEAGAAGVH 179 (428)
T ss_pred HhhhHhhhhcccccccCCCCeEEECCCCCCCcH-HHHHHHHHHHHcCCeEEE
Confidence 23322 1799986533 3444 488899999999999996
No 100
>PRK10558 alpha-dehydro-beta-deoxy-D-glucarate aldolase; Provisional
Probab=94.37 E-value=1.6 Score=46.58 Aligned_cols=229 Identities=15% Similarity=0.174 Sum_probs=133.1
Q ss_pred cHHHHHHHHHHHhhcCCCeEEe--ccccchhhhhhhhcCCcEEEEeccccccccCCccccccccccCchHHHHHhhhhhc
Q 004491 477 RTQAILSKLKYQIDKGLPIIGA--GAGTGISAKFEEAGGVDLIVLYNSGRFRMAGRGSLAGLLPFADANAVVLEMANEVL 554 (749)
Q Consensus 477 ~r~~il~~L~~~i~~~~piig~--gaGtGlsAk~ae~gGaDli~~ynsGrfR~~G~~SlagllpygdaN~iv~e~~~eil 554 (749)
+..++..+||+++++|+|++|. ..++-..+......|-||+++=-- +|++ -+.+..+++.-.-.
T Consensus 2 ~~~~~~n~lk~~l~~g~~~~g~~~~~~sp~~~e~~a~~G~D~v~iD~E-------Hg~~----~~~~~~~~i~a~~~--- 67 (256)
T PRK10558 2 NNDVFPNKFKAALAAKQVQIGCWSALANPITTEVLGLAGFDWLVLDGE-------HAPN----DVSTFIPQLMALKG--- 67 (256)
T ss_pred CCCccCHHHHHHHHcCCceEEEEEcCCCcHHHHHHHhcCCCEEEEccc-------cCCC----CHHHHHHHHHHHhh---
Confidence 3455677899999999999994 567788899999999999998321 1111 12222222221111
Q ss_pred CCCCCCceEEeeccCCCCCCHHHHHHHHHHcCcccee-----------------cCCccccc--chhhhhhhhhcCCchH
Q 004491 555 PVVKEVPVLAGVCGTDPFRRVDYFLKQLESIGFFGVQ-----------------NFPTVGLF--DGNFRQNLEETGMGYG 615 (749)
Q Consensus 555 p~v~~tPViaGv~atDP~~~~~~~l~~lk~~Gf~GV~-----------------NfPTvgli--DG~fR~~LEe~G~gy~ 615 (749)
..++.|.=|...|| .+++++.+.|..||. -||..|.- .+..|. .++|
T Consensus 68 ---~g~~~lVRvp~~~~-----~~i~r~LD~Ga~giivP~v~tae~a~~~v~a~kypP~G~Rg~~~~~~~----~~y~-- 133 (256)
T PRK10558 68 ---SASAPVVRVPTNEP-----VIIKRLLDIGFYNFLIPFVETAEEARRAVASTRYPPEGIRGVSVSHRA----NMFG-- 133 (256)
T ss_pred ---cCCCcEEECCCCCH-----HHHHHHhCCCCCeeeecCcCCHHHHHHHHHHcCCCCCCcCCCCccccc----cccC--
Confidence 12344444555554 567888899999984 46666642 121122 2233
Q ss_pred HHHHHHHHHHHcCCcccccccCH---HHHHHHHhc-cCcEEEeccCCCcccccccccccCHHHHHHHHHHHHHHHHHhCC
Q 004491 616 LEVEMIDKAHKMGLLTTPYAFNE---GEAVKMAKA-GADIIVAHMGLTTSGSIGAKTALSLDESVDRVQAIADAAHRINP 691 (749)
Q Consensus 616 ~EVemi~~A~~~gl~T~~yvf~~---eqa~~Ma~A-GaDiiv~h~GlT~gG~~Ga~~~~sl~~~~~~~~~i~~aa~~~~p 691 (749)
.=-++++.|.+. .+.++-+=++ +.+.+.++. |+|.+..-.+ --..++|......-.+-...++++.++|++.+.
T Consensus 134 ~~~~y~~~an~~-~~vi~~IEt~~av~ni~eI~av~gvd~l~iG~~-DLs~slG~~~~~~~~~v~~a~~~v~~aa~~~G~ 211 (256)
T PRK10558 134 TVPDYFAQSNKN-ITVLVQIESQQGVDNVDAIAATEGVDGIFVGPS-DLAAALGHLGNASHPDVQKAIQHIFARAKAHGK 211 (256)
T ss_pred ChHHHHHHhccc-cEEEEEECCHHHHHHHHHHhCCCCCcEEEECHH-HHHHHcCCCCCCCCHHHHHHHHHHHHHHHHcCC
Confidence 223677777653 5555544333 334444443 7787765432 112334433222224566667899999999988
Q ss_pred CeEEEEccCCCCCHHHHHHHHhhCCCccEEecCcccccchHHHHHHHHHHhhc
Q 004491 692 DAIVLCHGGPISSPSEAEFILKRTKGVHGFYGASSMERLPVEQAITSTMRQYK 744 (749)
Q Consensus 692 dii~l~hGGPi~~p~d~~~~l~~~~~~~Gf~g~Ss~ERlP~E~ai~~~~~~FK 744 (749)
.+-+ ...+|++++..+++ +++=+..+ .|..=.-++.++...+||
T Consensus 212 ~~g~-----~~~~~~~~~~~~~~--G~~~v~~~--~D~~~l~~~~~~~~~~~~ 255 (256)
T PRK10558 212 PSGI-----LAPVEADARRYLEW--GATFVAVG--SDLGVFRSATQALADTFK 255 (256)
T ss_pred ceEE-----cCCCHHHHHHHHHc--CCCEEEEc--hHHHHHHHHHHHHHHHhh
Confidence 6532 33578999999865 44433333 244445666777777665
No 101
>PRK09427 bifunctional indole-3-glycerol phosphate synthase/phosphoribosylanthranilate isomerase; Provisional
Probab=94.32 E-value=0.12 Score=59.27 Aligned_cols=178 Identities=19% Similarity=0.187 Sum_probs=111.3
Q ss_pred hhhhhhcCCcEEEEeccccccccCCccccccccccCchHHHHHhhhhhcCCCCCCceEEeeccCCCCCCHHHHHHHHHHc
Q 004491 506 AKFEEAGGVDLIVLYNSGRFRMAGRGSLAGLLPFADANAVVLEMANEVLPVVKEVPVLAGVCGTDPFRRVDYFLKQLESI 585 (749)
Q Consensus 506 Ak~ae~gGaDli~~ynsGrfR~~G~~SlagllpygdaN~iv~e~~~eilp~v~~tPViaGv~atDP~~~~~~~l~~lk~~ 585 (749)
|+.- ++||+-|=++--.+| |+-+.+-+.+..+. + +.|||. -|...+ +.-+.+-+.+
T Consensus 76 a~~y-~~gA~aiSVlTe~~~-------------F~Gs~~~l~~vr~~----v-~~PvLr----KDFiid-~~QI~ea~~~ 131 (454)
T PRK09427 76 ARVY-KHYASAISVLTDEKY-------------FQGSFDFLPIVRAI----V-TQPILC----KDFIID-PYQIYLARYY 131 (454)
T ss_pred HHHH-HcCCeEEEEecCcCc-------------CCCCHHHHHHHHHh----C-CCCEEe----ccccCC-HHHHHHHHHc
Confidence 4444 566887777665544 44444444433332 2 357765 344333 3446677788
Q ss_pred CccceecCCcccccchhhhhhhhhcCCchHHHHHHHHHHHHcCCcccccccCHHHHHHHHhccCcEEEeccCCCcccccc
Q 004491 586 GFFGVQNFPTVGLFDGNFRQNLEETGMGYGLEVEMIDKAHKMGLLTTPYAFNEGEAVKMAKAGADIIVAHMGLTTSGSIG 665 (749)
Q Consensus 586 Gf~GV~NfPTvgliDG~fR~~LEe~G~gy~~EVemi~~A~~~gl~T~~yvf~~eqa~~Ma~AGaDiiv~h~GlT~gG~~G 665 (749)
|=..|- ||-.-+- .++=-++++.|+++||-.+-=|.|++|.+.-.++||+||-++-
T Consensus 132 GADavL------LI~~~L~---------~~~l~~l~~~a~~lGl~~lvEvh~~~El~~al~~~a~iiGiNn--------- 187 (454)
T PRK09427 132 GADAIL------LMLSVLD---------DEQYRQLAAVAHSLNMGVLTEVSNEEELERAIALGAKVIGINN--------- 187 (454)
T ss_pred CCCchh------HHHHhCC---------HHHHHHHHHHHHHcCCcEEEEECCHHHHHHHHhCCCCEEEEeC---------
Confidence 877653 3332221 1122469999999999999999999999999999999986651
Q ss_pred cccccCHHHHHHHHHHHHHHHHHhCCCeEEEEccCCCCCHHHHHHHHhhCCCccEEecCcccccch-HHHHHHHH
Q 004491 666 AKTALSLDESVDRVQAIADAAHRINPDAIVLCHGGPISSPSEAEFILKRTKGVHGFYGASSMERLP-VEQAITST 739 (749)
Q Consensus 666 a~~~~sl~~~~~~~~~i~~aa~~~~pdii~l~hGGPi~~p~d~~~~l~~~~~~~Gf~g~Ss~ERlP-~E~ai~~~ 739 (749)
.+-.|++--.....++ +..+.++++++.-+| |.+|+|++++. . +++||.=|+|+=+=| ...++++.
T Consensus 188 -RdL~t~~vd~~~~~~l---~~~ip~~~~~vseSG-I~t~~d~~~~~-~--~~davLiG~~lm~~~d~~~~~~~L 254 (454)
T PRK09427 188 -RNLRDLSIDLNRTREL---APLIPADVIVISESG-IYTHAQVRELS-P--FANGFLIGSSLMAEDDLELAVRKL 254 (454)
T ss_pred -CCCccceECHHHHHHH---HhhCCCCcEEEEeCC-CCCHHHHHHHH-h--cCCEEEECHHHcCCCCHHHHHHHH
Confidence 1222333333344444 333456777777655 99999999974 4 489998777765543 34444443
No 102
>PRK07998 gatY putative fructose-1,6-bisphosphate aldolase; Reviewed
Probab=94.32 E-value=1.1 Score=48.68 Aligned_cols=171 Identities=19% Similarity=0.245 Sum_probs=110.7
Q ss_pred hhhhhhcCCcEEEEeccccccccCCccccccccccCchHHHHHhhhhhcCCCCCCceEEeeccCCCCCCHHHHHHHHHHc
Q 004491 506 AKFEEAGGVDLIVLYNSGRFRMAGRGSLAGLLPFADANAVVLEMANEVLPVVKEVPVLAGVCGTDPFRRVDYFLKQLESI 585 (749)
Q Consensus 506 Ak~ae~gGaDli~~ynsGrfR~~G~~SlagllpygdaN~iv~e~~~eilp~v~~tPViaGv~atDP~~~~~~~l~~lk~~ 585 (749)
-+.||+-++.+||-..-+-++ ++++...=.++.+++++. ++||.-= .|=-.+. ..+++.-+.
T Consensus 35 i~AAe~~~sPvIl~~~~~~~~---------~~g~~~~~~~~~~~A~~~-----~vPV~lH---LDH~~~~-e~i~~Ai~~ 96 (283)
T PRK07998 35 LNAIERSGLPNFIQIAPTNAQ---------LSGYDYIYEIVKRHADKM-----DVPVSLH---LDHGKTF-EDVKQAVRA 96 (283)
T ss_pred HHHHHHhCCCEEEECcHhHHh---------hCCHHHHHHHHHHHHHHC-----CCCEEEE---CcCCCCH-HHHHHHHHc
Confidence 367899999999977665544 333444445666677552 3576533 2333344 445556688
Q ss_pred CccceecCCcccccchh---hhhhhhhcCCchHHHHHHHHHHHHcCCcc---c--------------ccccCHHHHHHHH
Q 004491 586 GFFGVQNFPTVGLFDGN---FRQNLEETGMGYGLEVEMIDKAHKMGLLT---T--------------PYAFNEGEAVKMA 645 (749)
Q Consensus 586 Gf~GV~NfPTvgliDG~---fR~~LEe~G~gy~~EVemi~~A~~~gl~T---~--------------~yvf~~eqa~~Ma 645 (749)
||+.| +|||+ |-+|++.| -+..+.||..|+.- + .+-.++|||++++
T Consensus 97 GftSV-------M~DgS~l~~eeNi~~T-------~~vve~Ah~~gv~VEaElG~vgg~ed~~~~~~~~~T~pe~a~~Fv 162 (283)
T PRK07998 97 GFTSV-------MIDGAALPFEENIAFT-------KEAVDFAKSYGVPVEAELGAILGKEDDHVSEADCKTEPEKVKDFV 162 (283)
T ss_pred CCCEE-------EEeCCCCCHHHHHHHH-------HHHHHHHHHcCCEEEEEeccCCCccccccccccccCCHHHHHHHH
Confidence 99877 56874 34444432 24567788777632 2 2335899999998
Q ss_pred -hccCcEEEeccCCCcccccccccccCHHHHHHHHHHHHHHHHHhCCCeEEEEccCCCCCHHHHHHHHhhCCCccEE
Q 004491 646 -KAGADIIVAHMGLTTSGSIGAKTALSLDESVDRVQAIADAAHRINPDAIVLCHGGPISSPSEAEFILKRTKGVHGF 721 (749)
Q Consensus 646 -~AGaDiiv~h~GlT~gG~~Ga~~~~sl~~~~~~~~~i~~aa~~~~pdii~l~hGGPi~~p~d~~~~l~~~~~~~Gf 721 (749)
+-|+|.|=+-.|-..|--.+ ..+. .+++++|.++. ++-+..|||.=...+|++...+. ++..+
T Consensus 163 ~~TgvD~LAvaiGt~HG~Y~~--p~l~----~~~l~~I~~~~-----~vPLVlHGgSG~~~e~~~~ai~~--Gi~Ki 226 (283)
T PRK07998 163 ERTGCDMLAVSIGNVHGLEDI--PRID----IPLLKRIAEVS-----PVPLVIHGGSGIPPEILRSFVNY--KVAKV 226 (283)
T ss_pred HHhCcCeeehhccccccCCCC--CCcC----HHHHHHHHhhC-----CCCEEEeCCCCCCHHHHHHHHHc--CCcEE
Confidence 68999999999877765543 1222 25777776643 67777899988888999888744 44443
No 103
>PRK10128 2-keto-3-deoxy-L-rhamnonate aldolase; Provisional
Probab=94.29 E-value=2.2 Score=45.97 Aligned_cols=228 Identities=16% Similarity=0.131 Sum_probs=135.1
Q ss_pred HHHHHHHHhhcCCCeEEe--ccccchhhhhhhhcCCcEEEEeccccccccCCccccccccccCchHHHHHhhhhhcCCCC
Q 004491 481 ILSKLKYQIDKGLPIIGA--GAGTGISAKFEEAGGVDLIVLYNSGRFRMAGRGSLAGLLPFADANAVVLEMANEVLPVVK 558 (749)
Q Consensus 481 il~~L~~~i~~~~piig~--gaGtGlsAk~ae~gGaDli~~ynsGrfR~~G~~SlagllpygdaN~iv~e~~~eilp~v~ 558 (749)
|..+||+++++|+|.+|. ..++-..+......|-||+++-.- ++ .+-+.+..+++.... ..
T Consensus 5 ~~n~lk~~L~~G~~~~G~~~~~~sp~~~E~~a~~GfD~v~iD~E-------Hg----~~~~~~l~~~i~a~~------~~ 67 (267)
T PRK10128 5 LSNPFKEGLRKGEVQIGLWLSSTTSYMAEIAATSGYDWLLIDGE-------HA----PNTIQDLYHQLQAIA------PY 67 (267)
T ss_pred cchHHHHHHHcCCceEEEEecCCCcHHHHHHHHcCCCEEEEccc-------cC----CCCHHHHHHHHHHHH------hc
Confidence 456799999999999994 566677788888899999998421 11 111222222222211 11
Q ss_pred CCceEEeeccCCCCCCHHHHHHHHHHcCcccee-----------------cCCcccccc--hh-hhhhhhhcCCchHHHH
Q 004491 559 EVPVLAGVCGTDPFRRVDYFLKQLESIGFFGVQ-----------------NFPTVGLFD--GN-FRQNLEETGMGYGLEV 618 (749)
Q Consensus 559 ~tPViaGv~atDP~~~~~~~l~~lk~~Gf~GV~-----------------NfPTvgliD--G~-fR~~LEe~G~gy~~EV 618 (749)
.++.|.=|-..|| .++++..++|+.||. .||..|.=- +. .|. .++| .--
T Consensus 68 g~~~lVRvp~~~~-----~~i~r~LD~GA~GIivP~V~saeeA~~~V~a~rYpP~G~Rg~g~~~~r~----~~yg--~~~ 136 (267)
T PRK10128 68 ASQPVIRPVEGSK-----PLIKQVLDIGAQTLLIPMVDTAEQARQVVSATRYPPYGERGVGASVARA----ARWG--RIE 136 (267)
T ss_pred CCCeEEECCCCCH-----HHHHHHhCCCCCeeEecCcCCHHHHHHHHHhcCCCCCCCCCCCCccchh----hccC--ChH
Confidence 2344445555665 788999999999995 788777411 11 222 2222 222
Q ss_pred HHHHHHHHcCCcccccccCH---HHHHHHHhc-cCcEEEeccCCCcccccccccccCHHHHHHHHHHHHHHHHHhCCCeE
Q 004491 619 EMIDKAHKMGLLTTPYAFNE---GEAVKMAKA-GADIIVAHMGLTTSGSIGAKTALSLDESVDRVQAIADAAHRINPDAI 694 (749)
Q Consensus 619 emi~~A~~~gl~T~~yvf~~---eqa~~Ma~A-GaDiiv~h~GlT~gG~~Ga~~~~sl~~~~~~~~~i~~aa~~~~pdii 694 (749)
+.++.|.+. .+.++=+=++ +++.+.+++ |.|.|..-.+ --.-++|......=.+-.+.++++.++|++.++-+
T Consensus 137 ~y~~~an~~-~~vi~qiEt~~a~~n~~~I~~~~gvd~i~~G~~-Dls~slg~~~~~~~pev~~ai~~v~~a~~~~Gk~~- 213 (267)
T PRK10128 137 NYMAQANDS-LCLLVQVESKTALDNLDEILDVEGIDGVFIGPA-DLSASLGYPDNAGHPEVQRIIETSIRRIRAAGKAA- 213 (267)
T ss_pred HHHHHhccc-cEEEEEECCHHHHHhHHHHhCCCCCCEEEECHH-HHHHHcCCCCCCCCHHHHHHHHHHHHHHHHcCCeE-
Confidence 677777644 6666665444 334444433 5676655332 11123443333334455566688999999988732
Q ss_pred EEEccCCCCCHHHHHHHHhhCCCccEEecCcccccchHHHHHHHHHHhhcccc
Q 004491 695 VLCHGGPISSPSEAEFILKRTKGVHGFYGASSMERLPVEQAITSTMRQYKSIS 747 (749)
Q Consensus 695 ~l~hGGPi~~p~d~~~~l~~~~~~~Gf~g~Ss~ERlP~E~ai~~~~~~FK~~~ 747 (749)
|....+|++++..+++ +++=+..++ |.-=+-++.++..++||.++
T Consensus 214 ----G~~~~~~~~a~~~~~~--G~~~v~~g~--D~~~l~~~~~~~~~~~~~~~ 258 (267)
T PRK10128 214 ----GFLAVDPDMAQKCLAW--GANFVAVGV--DTMLYTDALDQRLAMFKSGK 258 (267)
T ss_pred ----EEcCCCHHHHHHHHHc--CCcEEEECh--HHHHHHHHHHHHHHHHhccc
Confidence 3345689999999865 444333333 33445677788888887653
No 104
>TIGR00167 cbbA ketose-bisphosphate aldolases. fructose-bisphosphate and tagatose-bisphosphate aldolase.
Probab=94.16 E-value=1.9 Score=46.92 Aligned_cols=168 Identities=24% Similarity=0.355 Sum_probs=108.0
Q ss_pred hhhhhcCCcEEEEeccccccc-cCCccccccccccCchHHHHHhhhhhcCCCCCCceEEeeccCCCCCCHHHHHHHHHHc
Q 004491 507 KFEEAGGVDLIVLYNSGRFRM-AGRGSLAGLLPFADANAVVLEMANEVLPVVKEVPVLAGVCGTDPFRRVDYFLKQLESI 585 (749)
Q Consensus 507 k~ae~gGaDli~~ynsGrfR~-~G~~SlagllpygdaN~iv~e~~~eilp~v~~tPViaGv~atDP~~~~~~~l~~lk~~ 585 (749)
+.||+-++.+||-...+..+. .| +...=.++.+++++.=+ .+||.- -.|=-.+.+. +++-.+.
T Consensus 36 ~AAee~~sPvIlq~~~~~~~~~~g---------~~~~~~~~~~~a~~~~~---~VPV~l---HLDHg~~~e~-i~~ai~~ 99 (288)
T TIGR00167 36 EAAAEEKSPVIIQFSNGAAKYIAG---------LGAISAMVKAMSEAYPY---GVPVAL---HLDHGASEED-CAQAVKA 99 (288)
T ss_pred HHHHHHCCCEEEECCcchhhccCC---------HHHHHHHHHHHHHhccC---CCcEEE---ECCCCCCHHH-HHHHHHc
Confidence 678999999999887766553 33 33333445555544211 357652 3455556655 5555577
Q ss_pred CccceecCCcccccchh---hhhhhhhcCCchHHHHHHHHHHHHcCCcc------------------c-ccccCHHHHHH
Q 004491 586 GFFGVQNFPTVGLFDGN---FRQNLEETGMGYGLEVEMIDKAHKMGLLT------------------T-PYAFNEGEAVK 643 (749)
Q Consensus 586 Gf~GV~NfPTvgliDG~---fR~~LEe~G~gy~~EVemi~~A~~~gl~T------------------~-~yvf~~eqa~~ 643 (749)
||+.| +|||+ |.+|++.| -+..+.||.+|+.- - .+-.++|||++
T Consensus 100 GftSV-------MiDgS~lp~eeNi~~T-------~~vv~~Ah~~gv~VEaElG~vgg~e~~~~~~~~~~~~T~peea~~ 165 (288)
T TIGR00167 100 GFSSV-------MIDGSHEPFEENIELT-------KKVVERAHKMGVSVEAELGTLGGEEDGVSVADESALYTDPEEAKE 165 (288)
T ss_pred CCCEE-------EecCCCCCHHHHHHHH-------HHHHHHHHHcCCEEEEEEeeccCccCCcccccccccCCCHHHHHH
Confidence 99776 78885 55555433 34566677765421 1 22447899999
Q ss_pred HHh-ccCcEEEeccCCCcccccccccccCHHHHHHHHHHHHHHHHHhCCCeEEEEccCCCCCHHHHHHHHh
Q 004491 644 MAK-AGADIIVAHMGLTTSGSIGAKTALSLDESVDRVQAIADAAHRINPDAIVLCHGGPISSPSEAEFILK 713 (749)
Q Consensus 644 Ma~-AGaDiiv~h~GlT~gG~~Ga~~~~sl~~~~~~~~~i~~aa~~~~pdii~l~hGGPi~~p~d~~~~l~ 713 (749)
+.+ -|+|.|-+-+|-..|-..+....+.++ ++++|.++. |+-+..|||-=...++++...+
T Consensus 166 Fv~~TgvD~LAvaiGt~HG~y~~~p~~Ld~~----~L~~I~~~v-----~vPLVlHGgSG~~~e~~~~ai~ 227 (288)
T TIGR00167 166 FVKLTGVDSLAAAIGNVHGVYKGEPKGLDFE----RLEEIQKYV-----NLPLVLHGGSGIPDEEIKKAIS 227 (288)
T ss_pred HHhccCCcEEeeccCccccccCCCCCccCHH----HHHHHHHHh-----CCCEEEeCCCCCCHHHHHHHHH
Confidence 986 599999999998887776532224544 667775554 5667789997666777777654
No 105
>PRK00278 trpC indole-3-glycerol-phosphate synthase; Reviewed
Probab=94.02 E-value=0.59 Score=49.62 Aligned_cols=128 Identities=23% Similarity=0.261 Sum_probs=89.8
Q ss_pred CCCceEEeeccCCCCC-------CHHHHHHHHHHcCccceecCCcccccchhhhhhhhhcCCchHHHHHHHHHHHHc---
Q 004491 558 KEVPVLAGVCGTDPFR-------RVDYFLKQLESIGFFGVQNFPTVGLFDGNFRQNLEETGMGYGLEVEMIDKAHKM--- 627 (749)
Q Consensus 558 ~~tPViaGv~atDP~~-------~~~~~l~~lk~~Gf~GV~NfPTvgliDG~fR~~LEe~G~gy~~EVemi~~A~~~--- 627 (749)
+++|||+-+....|.. ++.++-+...+.|.+|+ .-+-|-.| |.-.++.|+.+++.
T Consensus 48 ~~~~vIaeik~~sps~g~i~~~~~~~~~A~~~~~~GA~ai-----svlte~~~----------f~g~~~~l~~v~~~v~i 112 (260)
T PRK00278 48 GKPAVIAEVKKASPSKGVIREDFDPVEIAKAYEAGGAACL-----SVLTDERF----------FQGSLEYLRAARAAVSL 112 (260)
T ss_pred CCCeEEEEeeCCCCCCCccCCCCCHHHHHHHHHhCCCeEE-----EEeccccc----------CCCCHHHHHHHHHhcCC
Confidence 4589999999988884 56899999999999999 12222211 12225666666652
Q ss_pred CCcccccccCHHHHHHHHhccCcEEEeccCCCcccccccccccCHHHHHHHHHHHHHHHHHhCCCeEEEEccCCCCCHHH
Q 004491 628 GLLTTPYAFNEGEAVKMAKAGADIIVAHMGLTTSGSIGAKTALSLDESVDRVQAIADAAHRINPDAIVLCHGGPISSPSE 707 (749)
Q Consensus 628 gl~T~~yvf~~eqa~~Ma~AGaDiiv~h~GlT~gG~~Ga~~~~sl~~~~~~~~~i~~aa~~~~pdii~l~hGGPi~~p~d 707 (749)
=++.-=|..++.|+.+-.++|||+|..-... ++. +.++++++.|++.+-++++=|| +.+|
T Consensus 113 Pvl~kdfi~~~~qi~~a~~~GAD~VlLi~~~-----------l~~----~~l~~li~~a~~lGl~~lvevh-----~~~E 172 (260)
T PRK00278 113 PVLRKDFIIDPYQIYEARAAGADAILLIVAA-----------LDD----EQLKELLDYAHSLGLDVLVEVH-----DEEE 172 (260)
T ss_pred CEEeeeecCCHHHHHHHHHcCCCEEEEEecc-----------CCH----HHHHHHHHHHHHcCCeEEEEeC-----CHHH
Confidence 1222236677789999999999999876442 221 4667888888999999999999 7889
Q ss_pred HHHHHhhCCCccE
Q 004491 708 AEFILKRTKGVHG 720 (749)
Q Consensus 708 ~~~~l~~~~~~~G 720 (749)
++...+.-..+-|
T Consensus 173 ~~~A~~~gadiIg 185 (260)
T PRK00278 173 LERALKLGAPLIG 185 (260)
T ss_pred HHHHHHcCCCEEE
Confidence 9888865344444
No 106
>TIGR01036 pyrD_sub2 dihydroorotate dehydrogenase, subfamily 2. The subfamilies 1 and 2 share extensive homology, particularly toward the C-terminus. This subfamily has a longer N-terminal region.
Probab=93.94 E-value=4.3 Score=44.81 Aligned_cols=208 Identities=17% Similarity=0.174 Sum_probs=111.5
Q ss_pred CCCeEEeccccchhh---hhhhhcCCcEEEEeccccccccCCcc---------ccccccccCchHHHHHhhhhhcCCCCC
Q 004491 492 GLPIIGAGAGTGISA---KFEEAGGVDLIVLYNSGRFRMAGRGS---------LAGLLPFADANAVVLEMANEVLPVVKE 559 (749)
Q Consensus 492 ~~piig~gaGtGlsA---k~ae~gGaDli~~ynsGrfR~~G~~S---------lagllpygdaN~iv~e~~~eilp~v~~ 559 (749)
..|| |.++|.--++ +.....|+.+|++-.--..-+.|... .+-+=.+|-.|.=+-.+.+++.+.-.+
T Consensus 56 ~NPi-~lAsG~~~~~~~~~~~~~~G~Gavv~kTvt~~p~~gn~~Pr~~~~~~~~~~iN~~Gl~n~G~~~~l~~i~~~~~~ 134 (335)
T TIGR01036 56 PNPL-GLAAGFDKDGEAIDALGAMGFGFLEIGTVTPKPQPGNPRPRLFRLIEDEALINRMGFNNHGADVLVERLKRARYK 134 (335)
T ss_pred CCCc-EeCCccCCCHHHHHHHHhcCCCEEEeCCcCCCCCCCCCCCCEEECccccccccCCCCCChhHHHHHHHHhhccCC
Confidence 3455 3366654443 33345799999986544332333321 112224566676666666677775556
Q ss_pred CceEEeeccC---CCCCCHHHHHHHHHHcC--cccee-cC--Ccc-cccchhhhhhhhhcCCchHHHHHHHHHHHH----
Q 004491 560 VPVLAGVCGT---DPFRRVDYFLKQLESIG--FFGVQ-NF--PTV-GLFDGNFRQNLEETGMGYGLEVEMIDKAHK---- 626 (749)
Q Consensus 560 tPViaGv~at---DP~~~~~~~l~~lk~~G--f~GV~-Nf--PTv-gliDG~fR~~LEe~G~gy~~EVemi~~A~~---- 626 (749)
+||+.-+..+ +....+++|.+.++..+ ...+. |+ |.+ ++-+++-.+.+++. ++.++.+..
T Consensus 135 ~~i~vsi~~~~~~~~~~~~~dy~~~~~~~~~~ad~iElNlScPn~~~~~~~~~~~~~~~i-------~~~V~~~~~~~~~ 207 (335)
T TIGR01036 135 GPIGINIGKNKDTPSEDAKEDYAACLRKLGPLADYLVVNVSSPNTPGLRDLQYKAELRDL-------LTAVKQEQDGLRR 207 (335)
T ss_pred CcEEEEEeCCCCCCcccCHHHHHHHHHHHhhhCCEEEEEccCCCCCCcccccCHHHHHHH-------HHHHHHHHHhhhh
Confidence 8887776544 45567899999999888 55543 55 433 33333333333222 444444443
Q ss_pred ---cCCc--ccccccC---HHHHHHHHhccCcEEEecc-----------C--CCcccccccccccCHHHHHHHHHHHHHH
Q 004491 627 ---MGLL--TTPYAFN---EGEAVKMAKAGADIIVAHM-----------G--LTTSGSIGAKTALSLDESVDRVQAIADA 685 (749)
Q Consensus 627 ---~gl~--T~~yvf~---~eqa~~Ma~AGaDiiv~h~-----------G--lT~gG~~Ga~~~~sl~~~~~~~~~i~~a 685 (749)
.=++ -.|++-+ .+-|++..++|||-|++-= . ...||.-|.. -..-+.+.+++++
T Consensus 208 ~~~~Pv~vKLsP~~~~~~i~~ia~~~~~~GadGi~l~NT~~~~~~~~~~~~~~~~GGlSG~~---i~p~al~~v~~~~-- 282 (335)
T TIGR01036 208 VHRVPVLVKIAPDLTESDLEDIADSLVELGIDGVIATNTTVSRSLVQGPKNSDETGGLSGKP---LQDKSTEIIRRLY-- 282 (335)
T ss_pred ccCCceEEEeCCCCCHHHHHHHHHHHHHhCCcEEEEECCCCccccccCccccCCCCcccCHH---HHHHHHHHHHHHH--
Confidence 1111 1234321 2333445579999988631 1 1244444431 1122444444443
Q ss_pred HHHhCCCeEEEEccCCCCCHHHHHHHHhh
Q 004491 686 AHRINPDAIVLCHGGPISSPSEAEFILKR 714 (749)
Q Consensus 686 a~~~~pdii~l~hGGPi~~p~d~~~~l~~ 714 (749)
+..+.++-++.-|| |.+++|+..++..
T Consensus 283 -~~~~~~ipiig~GG-I~~~~da~e~l~a 309 (335)
T TIGR01036 283 -AELQGRLPIIGVGG-ISSAQDALEKIRA 309 (335)
T ss_pred -HHhCCCCCEEEECC-CCCHHHHHHHHHc
Confidence 34455555554454 9999999999854
No 107
>PRK07565 dihydroorotate dehydrogenase 2; Reviewed
Probab=93.91 E-value=3.5 Score=45.10 Aligned_cols=155 Identities=21% Similarity=0.256 Sum_probs=91.1
Q ss_pred CCCeEEeccccc-----hhhhhhhhcCCcEEEEe-c--cccccccCCccccccccccCchHHHHHhhhhhcCCCCCCceE
Q 004491 492 GLPIIGAGAGTG-----ISAKFEEAGGVDLIVLY-N--SGRFRMAGRGSLAGLLPFADANAVVLEMANEVLPVVKEVPVL 563 (749)
Q Consensus 492 ~~piig~gaGtG-----lsAk~ae~gGaDli~~y-n--sGrfR~~G~~SlagllpygdaN~iv~e~~~eilp~v~~tPVi 563 (749)
+.|++.--.|.. -.|+.+++.|+|.|-+- + -++-...|+ +.-+.+.|+.++|-..+ ++||+
T Consensus 101 ~~pvi~sI~g~~~~e~~~~a~~~~~agad~ielN~scpp~~~~~~g~----------~~~~~~~eil~~v~~~~-~iPV~ 169 (334)
T PRK07565 101 DIPVIASLNGSSAGGWVDYARQIEQAGADALELNIYYLPTDPDISGA----------EVEQRYLDILRAVKSAV-SIPVA 169 (334)
T ss_pred CCcEEEEeccCCHHHHHHHHHHHHHcCCCEEEEeCCCCCCCCCCccc----------cHHHHHHHHHHHHHhcc-CCcEE
Confidence 578877555543 45677788899988761 1 121111111 11123445555555554 48998
Q ss_pred EeeccCCCCCCHHHHHHHHHHcCccceecCCcccc--cchhhhhhhhhcCCchHHH----HHHHHHHH---HcCCccccc
Q 004491 564 AGVCGTDPFRRVDYFLKQLESIGFFGVQNFPTVGL--FDGNFRQNLEETGMGYGLE----VEMIDKAH---KMGLLTTPY 634 (749)
Q Consensus 564 aGv~atDP~~~~~~~l~~lk~~Gf~GV~NfPTvgl--iDG~fR~~LEe~G~gy~~E----Vemi~~A~---~~gl~T~~y 634 (749)
.=+... +-+...+.+.|++.|..||.=+-|+-- +|=.-++.++..|++-... .+++++.+ +.-+...+=
T Consensus 170 vKl~p~--~~~~~~~a~~l~~~G~dgI~~~n~~~~~~~d~~~~~~~~~~glsg~~~~~~al~~v~~~~~~~~ipIig~GG 247 (334)
T PRK07565 170 VKLSPY--FSNLANMAKRLDAAGADGLVLFNRFYQPDIDLETLEVVPGLVLSTPAELRLPLRWIAILSGRVGADLAATTG 247 (334)
T ss_pred EEeCCC--chhHHHHHHHHHHcCCCeEEEECCcCCCCcChhhcccccCCCCCCchhhhHHHHHHHHHHhhcCCCEEEECC
Confidence 776531 136889999999999999976555311 2211111222223222111 24444444 456777888
Q ss_pred ccCHHHHHHHHhccCcEEEeccCCC
Q 004491 635 AFNEGEAVKMAKAGADIIVAHMGLT 659 (749)
Q Consensus 635 vf~~eqa~~Ma~AGaDiiv~h~GlT 659 (749)
++|.++|.+|..+|||.+=+--++-
T Consensus 248 I~s~~Da~e~l~aGA~~V~v~t~~~ 272 (334)
T PRK07565 248 VHDAEDVIKMLLAGADVVMIASALL 272 (334)
T ss_pred CCCHHHHHHHHHcCCCceeeehHHh
Confidence 9999999999999999876554433
No 108
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=93.88 E-value=0.48 Score=54.86 Aligned_cols=160 Identities=21% Similarity=0.194 Sum_probs=103.6
Q ss_pred CcccccHHHHHHHHH----HHhhcCCCeEEeccccch----hhhhhhhcCCcEEEEeccccccccCCccccccccccCch
Q 004491 472 PETLQRTQAILSKLK----YQIDKGLPIIGAGAGTGI----SAKFEEAGGVDLIVLYNSGRFRMAGRGSLAGLLPFADAN 543 (749)
Q Consensus 472 ~~~~~~r~~il~~L~----~~i~~~~piig~gaGtGl----sAk~ae~gGaDli~~ynsGrfR~~G~~SlagllpygdaN 543 (749)
.--+.+|+.|++... .+-++|+.++|++.|+.- -++..-++|+|+|.+-.+ . |+++
T Consensus 204 liGIIT~~DIl~~~~~p~a~~D~~GrL~Vgaavg~~~~~~~~~~~l~~ag~d~i~id~a-----~-----------G~s~ 267 (495)
T PTZ00314 204 LVALVSRSDLKKNRGYPNASLDSNGQLLVGAAISTRPEDIERAAALIEAGVDVLVVDSS-----Q-----------GNSI 267 (495)
T ss_pred EEEEEEehHhhhcccCchhhhccCCCEEEEEEECCCHHHHHHHHHHHHCCCCEEEEecC-----C-----------CCch
Confidence 445667777776654 223469999999999863 567777899999997554 2 3333
Q ss_pred HHHHHhhhhhcCCCCCCceEEeeccCCCCCCHHHHHHHHHHcCccceecCCcccccchhhhhhhhhcCCchHHH---HHH
Q 004491 544 AVVLEMANEVLPVVKEVPVLAGVCGTDPFRRVDYFLKQLESIGFFGVQNFPTVGLFDGNFRQNLEETGMGYGLE---VEM 620 (749)
Q Consensus 544 ~iv~e~~~eilp~v~~tPViaGv~atDP~~~~~~~l~~lk~~Gf~GV~NfPTvgliDG~fR~~LEe~G~gy~~E---Vem 620 (749)
. +.|+-++|-...++.||+||=..| .+-.+.+.++|..+|. ||+=-|........+|.|+-.- .+.
T Consensus 268 ~-~~~~i~~ik~~~~~~~v~aG~V~t------~~~a~~~~~aGad~I~----vg~g~Gs~~~t~~~~~~g~p~~~ai~~~ 336 (495)
T PTZ00314 268 Y-QIDMIKKLKSNYPHVDIIAGNVVT------ADQAKNLIDAGADGLR----IGMGSGSICITQEVCAVGRPQASAVYHV 336 (495)
T ss_pred H-HHHHHHHHHhhCCCceEEECCcCC------HHHHHHHHHcCCCEEE----ECCcCCcccccchhccCCCChHHHHHHH
Confidence 2 245555555444579999983322 2345678889999874 1222232233334456665532 234
Q ss_pred HHHHHHcCCcccc--cccCHHHHHHHHhccCcEEEeccCC
Q 004491 621 IDKAHKMGLLTTP--YAFNEGEAVKMAKAGADIIVAHMGL 658 (749)
Q Consensus 621 i~~A~~~gl~T~~--yvf~~eqa~~Ma~AGaDiiv~h~Gl 658 (749)
.+.|++.|+.-+| =+.+..|+.+...+|||.+.+---+
T Consensus 337 ~~~~~~~~v~vIadGGi~~~~di~kAla~GA~~Vm~G~~~ 376 (495)
T PTZ00314 337 ARYARERGVPCIADGGIKNSGDICKALALGADCVMLGSLL 376 (495)
T ss_pred HHHHhhcCCeEEecCCCCCHHHHHHHHHcCCCEEEECchh
Confidence 4567778888777 7889999999999999988764433
No 109
>TIGR01521 FruBisAldo_II_B fructose-bisphosphate aldolase, class II, Calvin cycle subtype. Members of this family are class II examples of the enzyme fructose-bisphosphate aldolase, an enzyme both of glycolysis and (in the opposite direction) of the Calvin cycle of CO2 fixation. A deep split separates the tightly conserved yeast/E. coli/Mycobacterium subtype (all species lacking the Calvin cycle) represented by model TIGR01520 from a broader group of aldolases that includes both tagatose- and fructose-bisphosphate aldolases. This model represents a distinct, elongated, very well conserved subtype within the latter group. Most species with this aldolase subtype have the Calvin cycle.
Probab=93.86 E-value=1.1 Score=49.91 Aligned_cols=164 Identities=20% Similarity=0.314 Sum_probs=96.8
Q ss_pred hhhhhcCCcEEEEeccccccccCCccccccccccCchHHHHHhhhhhcCCCCCCceEEeeccCCCCCCHHHHHHHHHHcC
Q 004491 507 KFEEAGGVDLIVLYNSGRFRMAGRGSLAGLLPFADANAVVLEMANEVLPVVKEVPVLAGVCGTDPFRRVDYFLKQLESIG 586 (749)
Q Consensus 507 k~ae~gGaDli~~ynsGrfR~~G~~SlagllpygdaN~iv~e~~~eilp~v~~tPViaGv~atDP~~~~~~~l~~lk~~G 586 (749)
+.||+-+..+||-...|-.+..|. +....|.+...-..+.+||.-= .|=-.+.+ .+.+..+.|
T Consensus 34 ~AAEe~~sPvIlq~s~~~~~~~g~-------------~~~~~~~~~~ae~~~~VPValH---LDHg~~~e-~i~~Ai~~G 96 (347)
T TIGR01521 34 EAADKTDSPVILQASRGARSYAGA-------------PFLRHLILAAIEEYPHIPVVMH---QDHGNSPA-TCQRAIQLG 96 (347)
T ss_pred HHHHHhCCCEEEECCcchhhhCCH-------------HHHHHHHHHHHHhCCCCcEEEE---CCCCCCHH-HHHHHHHcC
Confidence 578999999999888876654442 2233333333323333576532 34444544 566667779
Q ss_pred ccceecCCcccccchhhhhhhhhcCCchHHH----HHHHHHHHHcCCc------------------------c-----cc
Q 004491 587 FFGVQNFPTVGLFDGNFRQNLEETGMGYGLE----VEMIDKAHKMGLL------------------------T-----TP 633 (749)
Q Consensus 587 f~GV~NfPTvgliDG~fR~~LEe~G~gy~~E----Vemi~~A~~~gl~------------------------T-----~~ 633 (749)
|+.| +|||+.... -++.+.|+.- -+..+.||..|+. . -.
T Consensus 97 FtSV-------MiDgS~l~~-~~~~~p~eENI~~Tkevve~Ah~~GvsVEaELG~igg~e~~~~g~~d~~~~~~~~~~~~ 168 (347)
T TIGR01521 97 FTSV-------MMDGSLRED-AKTPADYDYNVRVTAEVVAFAHAVGASVEGELGCLGSLETGMGEAEDGHGFEGVLDHSQ 168 (347)
T ss_pred CCEE-------eecCcCCcc-cCCCCCHHHHHHHHHHHHHHHHHcCCeEEEEeeecccccccccccccCcccccccchhh
Confidence 9776 899984211 1222233332 3456677753321 0 13
Q ss_pred cccCHHHHHHHHh-ccCcEEEeccCCCccccccc-cc-ccCHHHHHHHHHHHHHHHHHhCCCeEEEEccCC
Q 004491 634 YAFNEGEAVKMAK-AGADIIVAHMGLTTSGSIGA-KT-ALSLDESVDRVQAIADAAHRINPDAIVLCHGGP 701 (749)
Q Consensus 634 yvf~~eqa~~Ma~-AGaDiiv~h~GlT~gG~~Ga-~~-~~sl~~~~~~~~~i~~aa~~~~pdii~l~hGGP 701 (749)
+..++|||+++.+ -|+|.|-+=+|-..|-..+- +. ..-|+ .+++++|.++. +++-+..|||-
T Consensus 169 ~~T~PeeA~~Fv~~TgvD~LAvaiGt~HG~Yk~~~~p~~~~Ld--~~rL~eI~~~v----~~vPLVLHGgS 233 (347)
T TIGR01521 169 LLTDPEEAADFVKKTKVDALAVAIGTSHGAYKFTRKPTGEVLA--IQRIEEIHARL----PDTHLVMHGSS 233 (347)
T ss_pred cCCCHHHHHHHHHHHCcCEEehhcccccCCcCCCCCCChhhcC--HHHHHHHHccC----CCCCEEEeCCC
Confidence 3457899999985 69999999988776666542 11 11143 45677776543 35666779983
No 110
>TIGR01304 IMP_DH_rel_2 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase. Most species with a member of this family belong to the high GC Gram-positive bacteria, and these also have the IMP dehydrogenase described by TIGRFAMs equivalog model TIGR01302.
Probab=93.81 E-value=1.1 Score=50.16 Aligned_cols=163 Identities=14% Similarity=0.115 Sum_probs=95.0
Q ss_pred HhhhhhcCCCCCCceEEeeccCCCCCCHHHHHHHHHHcCccceecCCcccccchhhhhhhhhcCCchHHHHHHHHHHHHc
Q 004491 548 EMANEVLPVVKEVPVLAGVCGTDPFRRVDYFLKQLESIGFFGVQNFPTVGLFDGNFRQNLEETGMGYGLEVEMIDKAHKM 627 (749)
Q Consensus 548 e~~~eilp~v~~tPViaGv~atDP~~~~~~~l~~lk~~Gf~GV~NfPTvgliDG~fR~~LEe~G~gy~~EVemi~~A~~~ 627 (749)
++..+++..|++..|.+-+-- +|. +..+|.+.+.+.|..-|.=.+|. |...-..|-+. =.++.+..++.
T Consensus 119 ~l~~~ii~~vr~a~VtvkiRl-~~~-~~~e~a~~l~eAGad~I~ihgrt-------~~q~~~sg~~~--p~~l~~~i~~~ 187 (369)
T TIGR01304 119 ELLGERIAEVRDSGVITAVRV-SPQ-NAREIAPIVVKAGADLLVIQGTL-------VSAEHVSTSGE--PLNLKEFIGEL 187 (369)
T ss_pred HHHHHHHHHHHhcceEEEEec-CCc-CHHHHHHHHHHCCCCEEEEeccc-------hhhhccCCCCC--HHHHHHHHHHC
Confidence 344445555555555555444 453 78899999999999888766554 33322222222 22566667778
Q ss_pred CCcccc-cccCHHHHHHHHhccCcEEEec-c-CCCcccccccccccCHHHHHHHHHHHHH-HHHHhCC-CeEEEEccCCC
Q 004491 628 GLLTTP-YAFNEGEAVKMAKAGADIIVAH-M-GLTTSGSIGAKTALSLDESVDRVQAIAD-AAHRINP-DAIVLCHGGPI 702 (749)
Q Consensus 628 gl~T~~-yvf~~eqa~~Ma~AGaDiiv~h-~-GlT~gG~~Ga~~~~sl~~~~~~~~~i~~-aa~~~~p-dii~l~hGGPi 702 (749)
++.-+. -+++.++|+.+.++|||.|+.- - +-|+.+..|. ..+...++..+.+.++ -.++.+. ++-|+..|| |
T Consensus 188 ~IPVI~G~V~t~e~A~~~~~aGaDgV~~G~gg~~~~~~~lg~--~~p~~~ai~d~~~a~~~~~~e~g~r~vpVIAdGG-I 264 (369)
T TIGR01304 188 DVPVIAGGVNDYTTALHLMRTGAAGVIVGPGGANTTRLVLGI--EVPMATAIADVAAARRDYLDETGGRYVHVIADGG-I 264 (369)
T ss_pred CCCEEEeCCCCHHHHHHHHHcCCCEEEECCCCCcccccccCC--CCCHHHHHHHHHHHHHHHHHhcCCCCceEEEeCC-C
Confidence 887775 8999999999999999998821 1 1122223321 1232223222221111 1223332 466666655 9
Q ss_pred CCHHHHHHHHhhCCCccEEecCcc
Q 004491 703 SSPSEAEFILKRTKGVHGFYGASS 726 (749)
Q Consensus 703 ~~p~d~~~~l~~~~~~~Gf~g~Ss 726 (749)
.++.|+...+.. +.++-.-|+.
T Consensus 265 ~tg~di~kAlAl--GAdaV~iGt~ 286 (369)
T TIGR01304 265 ETSGDLVKAIAC--GADAVVLGSP 286 (369)
T ss_pred CCHHHHHHHHHc--CCCEeeeHHH
Confidence 999999998853 4555544443
No 111
>cd04732 HisA HisA. Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene.
Probab=93.80 E-value=2.1 Score=43.68 Aligned_cols=168 Identities=20% Similarity=0.289 Sum_probs=93.5
Q ss_pred hhhhhhhcCCcEEEEecccc-ccccCCccccccccccCchHHHHHhhhhhcCCCCCCceEEeeccCCCCCCHHHHHHHHH
Q 004491 505 SAKFEEAGGVDLIVLYNSGR-FRMAGRGSLAGLLPFADANAVVLEMANEVLPVVKEVPVLAGVCGTDPFRRVDYFLKQLE 583 (749)
Q Consensus 505 sAk~ae~gGaDli~~ynsGr-fR~~G~~SlagllpygdaN~iv~e~~~eilp~v~~tPViaGv~atDP~~~~~~~l~~lk 583 (749)
.||.-++.|+|.|.++.--+ |+ | ...| .++.+++.-.+ ++||+.|=.-.+ .++ .+++.
T Consensus 34 ~a~~~~~~g~d~l~v~dl~~~~~--~----------~~~~---~~~i~~i~~~~-~~pv~~~GgI~~----~e~-~~~~~ 92 (234)
T cd04732 34 VAKKWEEAGAKWLHVVDLDGAKG--G----------EPVN---LELIEEIVKAV-GIPVQVGGGIRS----LED-IERLL 92 (234)
T ss_pred HHHHHHHcCCCEEEEECCCcccc--C----------CCCC---HHHHHHHHHhc-CCCEEEeCCcCC----HHH-HHHHH
Confidence 45666678999999874322 11 1 1223 34444444444 589998755443 333 45566
Q ss_pred HcCccceecCCcccccchhhhhhhhhcCCchHHHHHHHHHHHH-cCC----cc--------------cccccCHHH-HHH
Q 004491 584 SIGFFGVQNFPTVGLFDGNFRQNLEETGMGYGLEVEMIDKAHK-MGL----LT--------------TPYAFNEGE-AVK 643 (749)
Q Consensus 584 ~~Gf~GV~NfPTvgliDG~fR~~LEe~G~gy~~EVemi~~A~~-~gl----~T--------------~~yvf~~eq-a~~ 643 (749)
+.|...|. .++-.+-| .++++++.+ .+- ++ -.+-.+..+ +++
T Consensus 93 ~~Gad~vv-igs~~l~d-----------------p~~~~~i~~~~g~~~i~~sid~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (234)
T cd04732 93 DLGVSRVI-IGTAAVKN-----------------PELVKELLKEYGGERIVVGLDAKDGKVATKGWLETSEVSLEELAKR 154 (234)
T ss_pred HcCCCEEE-ECchHHhC-----------------hHHHHHHHHHcCCceEEEEEEeeCCEEEECCCeeecCCCHHHHHHH
Confidence 78877763 22222211 222222222 121 01 012334434 455
Q ss_pred HHhccCcEEEeccCCCcccccccccccCHHHHHHHHHHHHHHHHHhCCCeEEEEccCCCCCHHHHHHHHhhCCCccEEec
Q 004491 644 MAKAGADIIVAHMGLTTSGSIGAKTALSLDESVDRVQAIADAAHRINPDAIVLCHGGPISSPSEAEFILKRTKGVHGFYG 723 (749)
Q Consensus 644 Ma~AGaDiiv~h~GlT~gG~~Ga~~~~sl~~~~~~~~~i~~aa~~~~pdii~l~hGGPi~~p~d~~~~l~~~~~~~Gf~g 723 (749)
+.++|+|-|++| +++..|+. .... .+.++++.+.. + +-++.+|-|.+++|++.+++. +++|..-
T Consensus 155 ~~~~ga~~iii~-~~~~~g~~---~g~~----~~~i~~i~~~~----~--ipvi~~GGi~~~~di~~~~~~--Ga~gv~v 218 (234)
T cd04732 155 FEELGVKAIIYT-DISRDGTL---SGPN----FELYKELAAAT----G--IPVIASGGVSSLDDIKALKEL--GVAGVIV 218 (234)
T ss_pred HHHcCCCEEEEE-eecCCCcc---CCCC----HHHHHHHHHhc----C--CCEEEecCCCCHHHHHHHHHC--CCCEEEE
Confidence 678999999887 56655553 2222 23334443322 1 345668889999999999863 8999998
Q ss_pred Cccc
Q 004491 724 ASSM 727 (749)
Q Consensus 724 ~Ss~ 727 (749)
+|++
T Consensus 219 g~~~ 222 (234)
T cd04732 219 GKAL 222 (234)
T ss_pred eHHH
Confidence 8876
No 112
>PRK07084 fructose-bisphosphate aldolase; Provisional
Probab=93.78 E-value=1.2 Score=49.21 Aligned_cols=188 Identities=18% Similarity=0.231 Sum_probs=110.3
Q ss_pred ccHHHHHHHHHHHhhcCCCeEEeccccchhh----hhhhhcCCcEEEEeccccccccCCccccccccccCchHHHHHhhh
Q 004491 476 QRTQAILSKLKYQIDKGLPIIGAGAGTGISA----KFEEAGGVDLIVLYNSGRFRMAGRGSLAGLLPFADANAVVLEMAN 551 (749)
Q Consensus 476 ~~r~~il~~L~~~i~~~~piig~gaGtGlsA----k~ae~gGaDli~~ynsGrfR~~G~~SlagllpygdaN~iv~e~~~ 551 (749)
.+-+++|++ ..++|-.|-..-.-.--++ +.||+-++.+||-...+..+-.|.. ++.+.=..+.++++
T Consensus 10 v~~k~lL~~---A~~~~yAV~AfN~~n~e~~~avi~AAee~~sPvIlq~s~~~~~~~g~~------~~~~~~~~~~~~a~ 80 (321)
T PRK07084 10 VNTREMFAK---AVKGGYAIPAYNFNNMEQLQAIIQACVETKSPVILQVSKGARKYANAT------LLRYMAQGAVEYAK 80 (321)
T ss_pred cCHHHHHHH---HHHCCceEEEEEeCCHHHHHHHHHHHHHhCCCEEEEechhHHhhCCch------HHHHHHHHHHHHHH
Confidence 455555543 3334444444444444444 4688999999998877765433311 12222233345554
Q ss_pred hhcCCCCCCceEEeeccCCCCCCHHHHHHHHHHcCccceecCCcccccchh---hhhhhhhcCCchHHHHHHHHHHHHcC
Q 004491 552 EVLPVVKEVPVLAGVCGTDPFRRVDYFLKQLESIGFFGVQNFPTVGLFDGN---FRQNLEETGMGYGLEVEMIDKAHKMG 628 (749)
Q Consensus 552 eilp~v~~tPViaGv~atDP~~~~~~~l~~lk~~Gf~GV~NfPTvgliDG~---fR~~LEe~G~gy~~EVemi~~A~~~g 628 (749)
+.=. .+||.- =.|=..+.+ ++.+..+.||+.| +|||+ |.+|++.| -|..+.||.+|
T Consensus 81 ~a~~---~VPV~l---HLDHg~~~e-~i~~ai~~GftSV-------MiD~S~lp~eeNI~~T-------~evv~~Ah~~G 139 (321)
T PRK07084 81 ELGC---PIPIVL---HLDHGDSFE-LCKDCIDSGFSSV-------MIDGSHLPYEENVALT-------KKVVEYAHQFD 139 (321)
T ss_pred HcCC---CCcEEE---ECCCCCCHH-HHHHHHHcCCCEE-------EeeCCCCCHHHHHHHH-------HHHHHHHHHcC
Confidence 4200 246542 234445554 5666677799776 78885 45555432 34567777654
Q ss_pred Cc-----------------ccccccCHHHHHHHHh-ccCcEEEeccCCCccccccc----ccccCHHHHHHHHHHHHHHH
Q 004491 629 LL-----------------TTPYAFNEGEAVKMAK-AGADIIVAHMGLTTSGSIGA----KTALSLDESVDRVQAIADAA 686 (749)
Q Consensus 629 l~-----------------T~~yvf~~eqa~~Ma~-AGaDiiv~h~GlT~gG~~Ga----~~~~sl~~~~~~~~~i~~aa 686 (749)
+. .-.+..++|||+++.+ -|+|.|-+-.|-..|-..+. +..+.+ +++++|.++.
T Consensus 140 vsVEaElG~igg~ed~~~~~~~~~T~peeA~~Fv~~TgvD~LAvaiGt~HG~Y~~~~~~~~p~Ld~----d~L~~I~~~~ 215 (321)
T PRK07084 140 VTVEGELGVLAGVEDEVSAEHHTYTQPEEVEDFVKKTGVDSLAISIGTSHGAYKFKPGQCPPPLRF----DILEEIEKRI 215 (321)
T ss_pred CeEEEEEeeecCccCCccCcccccCCHHHHHHHHHHhCCCEEeeccccccccccCCCCCCCCccCH----HHHHHHHHhc
Confidence 31 1122447899999985 59999999999887776652 223444 4667776654
Q ss_pred HHhCCCeEEEEccCC
Q 004491 687 HRINPDAIVLCHGGP 701 (749)
Q Consensus 687 ~~~~pdii~l~hGGP 701 (749)
+++-+..|||-
T Consensus 216 ----~~vPLVLHGgS 226 (321)
T PRK07084 216 ----PGFPIVLHGSS 226 (321)
T ss_pred ----CCCCEEEeCCC
Confidence 35656789994
No 113
>TIGR00742 yjbN tRNA dihydrouridine synthase A. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.
Probab=93.73 E-value=0.81 Score=50.14 Aligned_cols=155 Identities=18% Similarity=0.200 Sum_probs=89.0
Q ss_pred CCCceEEeeccCCCCCCHHHHHHHHHHcCcccee-cC--CcccccchhhhhhhhhcCCchHHHHHHHHHHHHc-CCc-cc
Q 004491 558 KEVPVLAGVCGTDPFRRVDYFLKQLESIGFFGVQ-NF--PTVGLFDGNFRQNLEETGMGYGLEVEMIDKAHKM-GLL-TT 632 (749)
Q Consensus 558 ~~tPViaGv~atDP~~~~~~~l~~lk~~Gf~GV~-Nf--PTvgliDG~fR~~LEe~G~gy~~EVemi~~A~~~-gl~-T~ 632 (749)
.+.|++.=+++.||- .+-+--+.+.+.||.+|. |+ |..-...+.+...|... .++=.++++..++. +.. |+
T Consensus 53 ~e~p~~vQl~g~~p~-~~~~aA~~~~~~g~d~IDlN~GCP~~~v~~~g~Gs~Ll~~---p~~~~~iv~av~~~~~~PVsv 128 (318)
T TIGR00742 53 EESPVALQLGGSDPN-DLAKCAKIAEKRGYDEINLNVGCPSDRVQNGNFGACLMGN---ADLVADCVKAMQEAVNIPVTV 128 (318)
T ss_pred CCCcEEEEEccCCHH-HHHHHHHHHHhCCCCEEEEECCCCHHHhCCCCeehHhhcC---HHHHHHHHHHHHHHhCCCeEE
Confidence 368999999999994 566667778888999986 55 54433333344444332 23335667766653 221 11
Q ss_pred ----ccccC------HHHHHHHHhccCcEEEeccCCC-cccccccccccCHHHHHHHHHHHHHHHHHhCCCeEEEEccCC
Q 004491 633 ----PYAFN------EGEAVKMAKAGADIIVAHMGLT-TSGSIGAKTALSLDESVDRVQAIADAAHRINPDAIVLCHGGP 701 (749)
Q Consensus 633 ----~yvf~------~eqa~~Ma~AGaDiiv~h~GlT-~gG~~Ga~~~~sl~~~~~~~~~i~~aa~~~~pdii~l~hGGP 701 (749)
.+--+ .+=++.+.++|+|.|.+|.... ..|.-|..+.. +..+ .-+.|++.... -+++-|+. -|-
T Consensus 129 KiR~g~~~~~~~~~~~~~~~~l~~~G~~~itvHgRt~~~qg~sg~~~~~-~~~~--~~~~i~~vk~~-~~~ipVi~-NGd 203 (318)
T TIGR00742 129 KHRIGIDPLDSYEFLCDFVEIVSGKGCQNFIVHARKAWLSGLSPKENRE-IPPL--RYERVYQLKKD-FPHLTIEI-NGG 203 (318)
T ss_pred EEecCCCCcchHHHHHHHHHHHHHcCCCEEEEeCCchhhcCCCcccccc-CCch--hHHHHHHHHHh-CCCCcEEE-ECC
Confidence 11111 1225667799999999996653 44544432111 1110 01223332333 34555555 466
Q ss_pred CCCHHHHHHHHhhCCCccEEecC
Q 004491 702 ISSPSEAEFILKRTKGVHGFYGA 724 (749)
Q Consensus 702 i~~p~d~~~~l~~~~~~~Gf~g~ 724 (749)
|.+++|++.++. +++|..=|
T Consensus 204 I~s~~da~~~l~---g~dgVMig 223 (318)
T TIGR00742 204 IKNSEQIKQHLS---HVDGVMVG 223 (318)
T ss_pred cCCHHHHHHHHh---CCCEEEEC
Confidence 999999999984 57776443
No 114
>TIGR02151 IPP_isom_2 isopentenyl-diphosphate delta-isomerase, type 2. Isopentenyl-diphosphate delta-isomerase (IPP isomerase) interconverts isopentenyl diphosphate and dimethylallyl diphosphate. This model represents the type 2 enzyme. FMN, NADPH, and Mg2+ are required by this form, which lacks homology to the type 1 enzyme (TIGR02150). IPP is precursor to many compounds, including enzyme cofactors, sterols, and isoprenoids.
Probab=93.70 E-value=3.1 Score=45.79 Aligned_cols=202 Identities=16% Similarity=0.186 Sum_probs=105.0
Q ss_pred CCCeEEeccccchh----------hhhhhhcCCcEEEEeccccccccCCccccccccccCchHHHHHh--hhhhcCCCCC
Q 004491 492 GLPIIGAGAGTGIS----------AKFEEAGGVDLIVLYNSGRFRMAGRGSLAGLLPFADANAVVLEM--ANEVLPVVKE 559 (749)
Q Consensus 492 ~~piig~gaGtGls----------Ak~ae~gGaDli~~ynsGrfR~~G~~SlagllpygdaN~iv~e~--~~eilp~v~~ 559 (749)
..||+-++ .||-+ |+.+++.|..+-+ ||.... |-|.. ..-++ -|+. ..+
T Consensus 53 ~~Pi~iaa-MtGg~~~~~~in~~La~~a~~~g~~~~~------------Gs~~~~--~~~~~-~~~~~~~vr~~---~~~ 113 (333)
T TIGR02151 53 KAPFYINA-MTGGSEEAGKINRNLARAARELGIPMGV------------GSQRAA--LKDPE-TADTFEVVREE---APN 113 (333)
T ss_pred cCCEEEeC-CCCCchhHHHHHHHHHHHHHHcCCCeEE------------cCchhh--ccChh-hHhHHHHHHHh---CCC
Confidence 56777766 35655 4456677766543 443322 22333 22222 2444 347
Q ss_pred CceEEeeccCCCC-CCHHHHHHHHHHcCccce-ecCCcccccchhhhhhhhhcCC-chHHHHHHHHHHHHc-CCcc----
Q 004491 560 VPVLAGVCGTDPF-RRVDYFLKQLESIGFFGV-QNFPTVGLFDGNFRQNLEETGM-GYGLEVEMIDKAHKM-GLLT---- 631 (749)
Q Consensus 560 tPViaGv~atDP~-~~~~~~l~~lk~~Gf~GV-~NfPTvgliDG~fR~~LEe~G~-gy~~EVemi~~A~~~-gl~T---- 631 (749)
.|+++=+++..+- .+.+.+.+.++.++=.++ .|++. ..+.....|- -|+.=+|.|+..++. ++.-
T Consensus 114 ~p~i~nl~~~~~~~~~~~~~~~~i~~i~adal~i~ln~-------~q~~~~p~g~~~f~~~le~i~~i~~~~~vPVivK~ 186 (333)
T TIGR02151 114 GPLIANIGAPQLVEGGPEEAQEAIDMIEADALAIHLNV-------LQELVQPEGDRNFKGWLEKIAEICSQLSVPVIVKE 186 (333)
T ss_pred CcEEeecCchhhccccHHHHHHHHHHhcCCCEEEcCcc-------cccccCCCCCcCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 8999988775542 234455554444443222 12210 0111111111 133233555555554 3322
Q ss_pred cccccCHHHHHHHHhccCcEEEeccCCCcccccccc-------c----ccCHHHHHHHHHHHHHHHHHhCCCeEEEEccC
Q 004491 632 TPYAFNEGEAVKMAKAGADIIVAHMGLTTSGSIGAK-------T----ALSLDESVDRVQAIADAAHRINPDAIVLCHGG 700 (749)
Q Consensus 632 ~~yvf~~eqa~~Ma~AGaDiiv~h~GlT~gG~~Ga~-------~----~~sl~~~~~~~~~i~~aa~~~~pdii~l~hGG 700 (749)
.++.++.+.|+.+.++|+|.|++| | .||+--+. . ..-.+-.+...+.|.++.. ...++-++.-||
T Consensus 187 ~g~g~~~~~a~~L~~aGvd~I~Vs-g--~gGt~~~~ie~~r~~~~~~~~~~~~~g~~t~~~l~~~~~-~~~~ipVIasGG 262 (333)
T TIGR02151 187 VGFGISKEVAKLLADAGVSAIDVA-G--AGGTSWAQVENYRAKGSNLASFFNDWGIPTAASLLEVRS-DAPDAPIIASGG 262 (333)
T ss_pred cCCCCCHHHHHHHHHcCCCEEEEC-C--CCCCcccchhhhcccccccchhhhcccHhHHHHHHHHHh-cCCCCeEEEECC
Confidence 245578999999999999999998 4 34432110 0 0001112333444444433 344566666655
Q ss_pred CCCCHHHHHHHHhhCCCccEEecCcc
Q 004491 701 PISSPSEAEFILKRTKGVHGFYGASS 726 (749)
Q Consensus 701 Pi~~p~d~~~~l~~~~~~~Gf~g~Ss 726 (749)
|.+++|+...+.. +++..-=++.
T Consensus 263 -I~~~~di~kaLal--GAd~V~igr~ 285 (333)
T TIGR02151 263 -LRTGLDVAKAIAL--GADAVGMARP 285 (333)
T ss_pred -CCCHHHHHHHHHh--CCCeehhhHH
Confidence 9999999999964 4665544443
No 115
>PRK05286 dihydroorotate dehydrogenase 2; Reviewed
Probab=93.69 E-value=0.43 Score=52.55 Aligned_cols=167 Identities=18% Similarity=0.132 Sum_probs=99.2
Q ss_pred HHHHHHHHHHhhcCCCeEEeccccc---------hhhhhhhhcC--CcEEEE-eccccccccCCccccccccccCchHHH
Q 004491 479 QAILSKLKYQIDKGLPIIGAGAGTG---------ISAKFEEAGG--VDLIVL-YNSGRFRMAGRGSLAGLLPFADANAVV 546 (749)
Q Consensus 479 ~~il~~L~~~i~~~~piig~gaGtG---------lsAk~ae~gG--aDli~~-ynsGrfR~~G~~SlagllpygdaN~iv 546 (749)
+..+++|++.- .+.|++..-.|+. -.++.+++.+ ||.|.+ +++=.. .|..+ +-+ =+.+
T Consensus 125 ~~~~~~l~~~~-~~~pvivsI~~~~~~~~~~~~~d~~~~~~~~~~~ad~lelN~scP~~--~g~~~----~~~---~~~~ 194 (344)
T PRK05286 125 DALAERLKKAY-RGIPLGINIGKNKDTPLEDAVDDYLICLEKLYPYADYFTVNISSPNT--PGLRD----LQY---GEAL 194 (344)
T ss_pred HHHHHHHHHhc-CCCcEEEEEecCCCCCcccCHHHHHHHHHHHHhhCCEEEEEccCCCC--CCccc----ccC---HHHH
Confidence 45566666533 5678887666653 3456666666 998876 322211 12111 111 1334
Q ss_pred HHhhhhhcCCCC----CCceEEeeccCCCCCCHHHHHHHHHHcCccceecCCcccccchhhhhhh--hhcCCc----hHH
Q 004491 547 LEMANEVLPVVK----EVPVLAGVCGTDPFRRVDYFLKQLESIGFFGVQNFPTVGLFDGNFRQNL--EETGMG----YGL 616 (749)
Q Consensus 547 ~e~~~eilp~v~----~tPViaGv~atDP~~~~~~~l~~lk~~Gf~GV~NfPTvgliDG~fR~~L--Ee~G~g----y~~ 616 (749)
.|+.++|-..++ ++||+.=+.......++..+.+.+.+.|..||.=+-|..-.++..+..+ ..-|++ |..
T Consensus 195 ~eiv~aVr~~~~~~~~~~PV~vKlsp~~~~~~~~~ia~~l~~~Gadgi~~~nt~~~~~~~~~~~~~~~~gg~SG~~~~~~ 274 (344)
T PRK05286 195 DELLAALKEAQAELHGYVPLLVKIAPDLSDEELDDIADLALEHGIDGVIATNTTLSRDGLKGLPNADEAGGLSGRPLFER 274 (344)
T ss_pred HHHHHHHHHHHhccccCCceEEEeCCCCCHHHHHHHHHHHHHhCCcEEEEeCCccccccccccccCCCCCCcccHHHHHH
Confidence 445455544555 4899999884323235888999999999999987766533332111111 111222 123
Q ss_pred HHHHHHHHHH-----cCCcccccccCHHHHHHHHhccCcEEEec
Q 004491 617 EVEMIDKAHK-----MGLLTTPYAFNEGEAVKMAKAGADIIVAH 655 (749)
Q Consensus 617 EVemi~~A~~-----~gl~T~~yvf~~eqa~~Ma~AGaDiiv~h 655 (749)
-.+++++.++ .-+..++=++|.++|.+|.++|||.+=+.
T Consensus 275 ~l~~v~~l~~~~~~~ipIig~GGI~s~eda~e~l~aGAd~V~v~ 318 (344)
T PRK05286 275 STEVIRRLYKELGGRLPIIGVGGIDSAEDAYEKIRAGASLVQIY 318 (344)
T ss_pred HHHHHHHHHHHhCCCCCEEEECCCCCHHHHHHHHHcCCCHHHHH
Confidence 4455655554 34777888999999999999999976444
No 116
>PF00478 IMPDH: IMP dehydrogenase / GMP reductase domain; InterPro: IPR001093 Synonym(s): Inosine-5'-monophosphate dehydrogenase, Inosinic acid dehydrogenase; Synonym(s): Guanosine 5'-monophosphate oxidoreductase This entry contains two related enzymes IMP dehydrogenase and GMP reducatase. These enzymes adopt a TIM barrel structure. IMP dehydrogenase (1.1.1.205 from EC) (IMPDH) catalyzes the rate-limiting reaction of de novo GTP biosynthesis, the NAD-dependent reduction of IMP into XMP []. Inosine 5-phosphate + NAD+ + H2O = xanthosine 5-phosphate + NADH IMP dehydrogenase is associated with cell proliferation and is a possible target for cancer chemotherapy. Mammalian and bacterial IMPDHs are tetramers of identical chains. There are two IMP dehydrogenase isozymes in humans []. IMP dehydrogenase nearly always contains a long insertion that has two CBS domains within it. GMP reductase (1.7.1.7 from EC) catalyzes the irreversible and NADPH-dependent reductive deamination of GMP into IMP []. NADPH + guanosine 5-phosphate = NADP+ + inosine 5-phosphate + NH3 It converts nucleobase, nucleoside and nucleotide derivatives of G to A nucleotides, and maintains intracellular balance of A and G nucleotides.; GO: 0003824 catalytic activity, 0055114 oxidation-reduction process; PDB: 3FFS_D 1VRD_A 1JCN_B 1EEP_B 3TSB_B 3USB_B 3TSD_A 4FF0_A 4FEZ_A 3KHJ_D ....
Probab=93.68 E-value=0.9 Score=50.74 Aligned_cols=144 Identities=26% Similarity=0.339 Sum_probs=87.9
Q ss_pred cHHHHHHHHHHH------hhcCCCeEEeccccch----hhhhhhhcCCcEEEEeccccccccCCccccccccccCchHHH
Q 004491 477 RTQAILSKLKYQ------IDKGLPIIGAGAGTGI----SAKFEEAGGVDLIVLYNSGRFRMAGRGSLAGLLPFADANAVV 546 (749)
Q Consensus 477 ~r~~il~~L~~~------i~~~~piig~gaGtGl----sAk~ae~gGaDli~~ynsGrfR~~G~~SlagllpygdaN~iv 546 (749)
.+.+.++++++. -.+++.++|++.|+.- -++...+.|+|+|++-.+ .-.|+.+
T Consensus 74 ~q~~~v~~vK~~~~~a~~d~~~~l~V~aavg~~~~~~er~~~L~~agvD~ivID~a-----------------~g~s~~~ 136 (352)
T PF00478_consen 74 EQAEEVKKVKRYYPNASKDEKGRLLVAAAVGTRDDDFERAEALVEAGVDVIVIDSA-----------------HGHSEHV 136 (352)
T ss_dssp HHHHHHHHHHTHHTTHHBHTTSCBCEEEEEESSTCHHHHHHHHHHTT-SEEEEE-S-----------------STTSHHH
T ss_pred HHHHHHhhhccccccccccccccceEEEEecCCHHHHHHHHHHHHcCCCEEEcccc-----------------CccHHHH
Confidence 345667777664 3668999999999986 555566689999998633 1234445
Q ss_pred HHhhhhhcCCCCCCceEEeeccCCCCCCHHHHHHHHHHcCccceecCCcccccchhhhhhhhhcCCchHHHHHHHHHHHH
Q 004491 547 LEMANEVLPVVKEVPVLAGVCGTDPFRRVDYFLKQLESIGFFGVQNFPTVGLFDGNFRQNLEETGMGYGLEVEMIDKAHK 626 (749)
Q Consensus 547 ~e~~~eilp~v~~tPViaGv~atDP~~~~~~~l~~lk~~Gf~GV~NfPTvgliDG~fR~~LEe~G~gy~~EVemi~~A~~ 626 (749)
.++.++|--..+++|||+|=+
T Consensus 137 ~~~ik~ik~~~~~~~viaGNV----------------------------------------------------------- 157 (352)
T PF00478_consen 137 IDMIKKIKKKFPDVPVIAGNV----------------------------------------------------------- 157 (352)
T ss_dssp HHHHHHHHHHSTTSEEEEEEE-----------------------------------------------------------
T ss_pred HHHHHHHHHhCCCceEEeccc-----------------------------------------------------------
Confidence 555543322233677777733
Q ss_pred cCCcccccccCHHHHHHHHhccCcEEEeccC----CCcccccccccccCHHHHHHHHHHHHHHHHHhCCCeEEEEccCCC
Q 004491 627 MGLLTTPYAFNEGEAVKMAKAGADIIVAHMG----LTTSGSIGAKTALSLDESVDRVQAIADAAHRINPDAIVLCHGGPI 702 (749)
Q Consensus 627 ~gl~T~~yvf~~eqa~~Ma~AGaDiiv~h~G----lT~gG~~Ga~~~~sl~~~~~~~~~i~~aa~~~~pdii~l~hGGPi 702 (749)
-+.|.|+.|.++|||.|-+-+| .||....|.... - +..+.+.++++++. ++-|++.|| |
T Consensus 158 ---------~T~e~a~~L~~aGad~vkVGiGpGsiCtTr~v~GvG~P--Q---~tAv~~~a~~a~~~--~v~iIADGG-i 220 (352)
T PF00478_consen 158 ---------VTYEGAKDLIDAGADAVKVGIGPGSICTTREVTGVGVP--Q---LTAVYECAEAARDY--GVPIIADGG-I 220 (352)
T ss_dssp ----------SHHHHHHHHHTT-SEEEESSSSSTTBHHHHHHSBSCT--H---HHHHHHHHHHHHCT--TSEEEEESS--
T ss_pred ---------CCHHHHHHHHHcCCCEEEEeccCCcccccccccccCCc--H---HHHHHHHHHHhhhc--cCceeecCC-c
Confidence 3478999999999999999988 333333332211 0 11223333444433 677888877 8
Q ss_pred CCHHHHHHHHh
Q 004491 703 SSPSEAEFILK 713 (749)
Q Consensus 703 ~~p~d~~~~l~ 713 (749)
.++-|+-.-|.
T Consensus 221 ~~sGDi~KAla 231 (352)
T PF00478_consen 221 RTSGDIVKALA 231 (352)
T ss_dssp SSHHHHHHHHH
T ss_pred Ccccceeeeee
Confidence 99999887773
No 117
>cd00956 Transaldolase_FSA Transaldolase-like fructose-6-phosphate aldolases (FSA) found in bacteria and archaea, which are member of the MipB/TalC subfamily of class I aldolases. FSA catalyze an aldol cleavage of fructose 6-phosphate and do not utilize fructose, fructose 1-phosphate, fructose 1,6-phosphate, or dihydroxyacetone phosphate. The enzymes belong to the transaldolase family that serves in transfer reactions in the pentose phosphate cycle, and are more distantly related to fructose 1,6-bisphosphate aldolase.
Probab=93.66 E-value=0.27 Score=50.84 Aligned_cols=114 Identities=17% Similarity=0.256 Sum_probs=81.4
Q ss_pred HHHHHHHHHcCC-cccccccCHHHHHHHHhccCcEEEeccCCCcccccccccccCHHHHHHHHHHHHHHHHHhCCCeEEE
Q 004491 618 VEMIDKAHKMGL-LTTPYAFNEGEAVKMAKAGADIIVAHMGLTTSGSIGAKTALSLDESVDRVQAIADAAHRINPDAIVL 696 (749)
Q Consensus 618 Vemi~~A~~~gl-~T~~yvf~~eqa~~Ma~AGaDiiv~h~GlT~gG~~Ga~~~~sl~~~~~~~~~i~~aa~~~~pdii~l 696 (749)
++.|++-++.|+ .+.--||+.+||..-++|||+.|.+++|.-.- . -.+..+.++++.+.+++.+.+.-+|
T Consensus 91 l~ai~~L~~~gi~v~~T~V~s~~Qa~~Aa~AGA~yvsP~vgR~~~--~-------g~dg~~~i~~i~~~~~~~~~~tkil 161 (211)
T cd00956 91 LKAIKKLSEEGIKTNVTAIFSAAQALLAAKAGATYVSPFVGRIDD--L-------GGDGMELIREIRTIFDNYGFDTKIL 161 (211)
T ss_pred HHHHHHHHHcCCceeeEEecCHHHHHHHHHcCCCEEEEecChHhh--c-------CCCHHHHHHHHHHHHHHcCCCceEE
Confidence 568888888898 45567999999999999999999999997422 1 1257788899999999988776666
Q ss_pred EccCCCCCHHHHHHHHhhCCCccEE-ecCcccccchHHHHHHHHHHhhc
Q 004491 697 CHGGPISSPSEAEFILKRTKGVHGF-YGASSMERLPVEQAITSTMRQYK 744 (749)
Q Consensus 697 ~hGGPi~~p~d~~~~l~~~~~~~Gf-~g~Ss~ERlP~E~ai~~~~~~FK 744 (749)
..-+.+|+++...+. .|+|-+ +.-.-++.+---....+.++.|.
T Consensus 162 --~As~r~~~ei~~a~~--~Gad~vTv~~~vl~~l~~~~~t~~~v~~F~ 206 (211)
T cd00956 162 --AASIRNPQHVIEAAL--AGADAITLPPDVLEQLLKHPLTDKGVEKFL 206 (211)
T ss_pred --ecccCCHHHHHHHHH--cCCCEEEeCHHHHHHHhcCccHHHHHHHHH
Confidence 345789999888764 456555 33334444443344455555554
No 118
>PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=93.59 E-value=0.72 Score=47.72 Aligned_cols=107 Identities=18% Similarity=0.135 Sum_probs=82.8
Q ss_pred HHHHHHHHcCCcccccccCHHHHHHHHhccCcEEEeccCCCcccccccccccCHHHHHHHHHHHHHHHHHhCCCeEEEEc
Q 004491 619 EMIDKAHKMGLLTTPYAFNEGEAVKMAKAGADIIVAHMGLTTSGSIGAKTALSLDESVDRVQAIADAAHRINPDAIVLCH 698 (749)
Q Consensus 619 emi~~A~~~gl~T~~yvf~~eqa~~Ma~AGaDiiv~h~GlT~gG~~Ga~~~~sl~~~~~~~~~i~~aa~~~~pdii~l~h 698 (749)
|+|+.|++.|+..+|=++|+.|+.+..++|+|++=...+-..||. ...++.+..=|++-++--
T Consensus 88 ~vi~~a~~~~i~~iPG~~TptEi~~A~~~Ga~~vK~FPa~~~GG~-----------------~yikal~~plp~~~l~pt 150 (201)
T PRK06015 88 ELLAAANDSDVPLLPGAATPSEVMALREEGYTVLKFFPAEQAGGA-----------------AFLKALSSPLAGTFFCPT 150 (201)
T ss_pred HHHHHHHHcCCCEeCCCCCHHHHHHHHHCCCCEEEECCchhhCCH-----------------HHHHHHHhhCCCCcEEec
Confidence 679999999999999999999999999999999998885444443 244555777789999988
Q ss_pred cCCCCCHHHHHHHHhhCCCccEEecCccccc-chHH----HHHHHHHHhhccc
Q 004491 699 GGPISSPSEAEFILKRTKGVHGFYGASSMER-LPVE----QAITSTMRQYKSI 746 (749)
Q Consensus 699 GGPi~~p~d~~~~l~~~~~~~Gf~g~Ss~ER-lP~E----~ai~~~~~~FK~~ 746 (749)
|| -+++++...++. .+ ....|+|.+=. --++ ..|++..++|..+
T Consensus 151 GG--V~~~n~~~~l~a-g~-~~~~ggs~l~~~~~~~~~~~~~i~~~a~~~~~~ 199 (201)
T PRK06015 151 GG--ISLKNARDYLSL-PN-VVCVGGSWVAPKELVAAGDWAGITKLAAEAAAL 199 (201)
T ss_pred CC--CCHHHHHHHHhC-CC-eEEEEchhhCCchhhhcccHHHHHHHHHHHHHh
Confidence 88 788999999966 44 46777777731 1122 5688888877654
No 119
>PF01261 AP_endonuc_2: Xylose isomerase-like TIM barrel; InterPro: IPR012307 This TIM alpha/beta barrel structure is found in xylose isomerase (P19148 from SWISSPROT) and in endonuclease IV (P12638 from SWISSPROT, 3.1.21.2 from EC). This domain is also found in the N termini of bacterial myo-inositol catabolism proteins. These are involved in the myo-inositol catabolism pathway, and is required for growth on myo-inositol in Rhizobium leguminosarum bv. viciae []. ; PDB: 3KWS_B 3DX5_A 3CQH_B 3CQI_A 3CQK_A 3CQJ_B 2G0W_B 1DXI_A 2ZDS_D 3TVA_B ....
Probab=93.58 E-value=0.42 Score=46.41 Aligned_cols=69 Identities=20% Similarity=0.316 Sum_probs=47.8
Q ss_pred HHHHhccCcEEEeccCC---CcccccccccccCHHHHHHHHHHHHHHHHHhCCCeEEEEc--cCCC-CCH---HHHHHHH
Q 004491 642 VKMAKAGADIIVAHMGL---TTSGSIGAKTALSLDESVDRVQAIADAAHRINPDAIVLCH--GGPI-SSP---SEAEFIL 712 (749)
Q Consensus 642 ~~Ma~AGaDiiv~h~Gl---T~gG~~Ga~~~~sl~~~~~~~~~i~~aa~~~~pdii~l~h--GGPi-~~p---~d~~~~l 712 (749)
+.+.+.|++.++.|.|. ..... .....+..++..+++.+.|.+.+ +.+.++ .++. ..+ +++..++
T Consensus 78 ~~a~~lg~~~i~~~~g~~~~~~~~~----~~~~~~~~~~~l~~l~~~a~~~g--v~i~lE~~~~~~~~~~~~~~~~~~~l 151 (213)
T PF01261_consen 78 DLAKRLGAKYIVVHSGRYPSGPEDD----TEENWERLAENLRELAEIAEEYG--VRIALENHPGPFSETPFSVEEIYRLL 151 (213)
T ss_dssp HHHHHHTBSEEEEECTTESSSTTSS----HHHHHHHHHHHHHHHHHHHHHHT--SEEEEE-SSSSSSSEESSHHHHHHHH
T ss_pred HHHHHhCCCceeecCcccccccCCC----HHHHHHHHHHHHHHHHhhhhhhc--ceEEEecccCccccchhhHHHHHHHH
Confidence 34457799999999983 22222 23567888888899999998887 455544 3333 344 8999999
Q ss_pred hhCC
Q 004491 713 KRTK 716 (749)
Q Consensus 713 ~~~~ 716 (749)
+.+.
T Consensus 152 ~~~~ 155 (213)
T PF01261_consen 152 EEVD 155 (213)
T ss_dssp HHHT
T ss_pred hhcC
Confidence 8755
No 120
>cd04738 DHOD_2_like Dihydroorotate dehydrogenase (DHOD) class 2. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences, their cellular location and their natural electron acceptor used to reoxidize the flavin group. Members of class 1 are cytosolic enzymes and multimers, while class 2 enzymes are membrane associated, monomeric and use respiratory quinones as their physiological electron acceptors.
Probab=93.57 E-value=0.47 Score=51.76 Aligned_cols=170 Identities=17% Similarity=0.130 Sum_probs=95.1
Q ss_pred HHHHHHHHHHhhcCCCeEEeccccc---------hhhhhhhhcC--CcEEEEeccccccccCCccccccccccCchHHHH
Q 004491 479 QAILSKLKYQIDKGLPIIGAGAGTG---------ISAKFEEAGG--VDLIVLYNSGRFRMAGRGSLAGLLPFADANAVVL 547 (749)
Q Consensus 479 ~~il~~L~~~i~~~~piig~gaGtG---------lsAk~ae~gG--aDli~~ynsGrfR~~G~~SlagllpygdaN~iv~ 547 (749)
++.+++|++.-..+.|++.--.|+. -.++++++.+ ||.|-+ |-+-=-..|... ..-=+.+.
T Consensus 115 ~~~~~~l~~~~~~~~plivsi~g~~~~~~~~~~~d~~~~~~~~~~~ad~iel-N~scP~~~g~~~-------~~~~~~~~ 186 (327)
T cd04738 115 DAVAKRLKKRRPRGGPLGVNIGKNKDTPLEDAVEDYVIGVRKLGPYADYLVV-NVSSPNTPGLRD-------LQGKEALR 186 (327)
T ss_pred HHHHHHHHHhccCCCeEEEEEeCCCCCcccccHHHHHHHHHHHHhhCCEEEE-ECCCCCCCcccc-------ccCHHHHH
Confidence 4566777654334788887666654 2455556644 998776 211111112111 11123334
Q ss_pred HhhhhhcCCCC----CCceEEeeccCCCCCCHHHHHHHHHHcCccceecCCcccccchhhhhhhhhcCC-chH-------
Q 004491 548 EMANEVLPVVK----EVPVLAGVCGTDPFRRVDYFLKQLESIGFFGVQNFPTVGLFDGNFRQNLEETGM-GYG------- 615 (749)
Q Consensus 548 e~~~eilp~v~----~tPViaGv~atDP~~~~~~~l~~lk~~Gf~GV~NfPTvgliDG~fR~~LEe~G~-gy~------- 615 (749)
++.+.|--.++ ++||+.=+......-++..+.+.+.+.|..||.=+-|..-.++.-+..+ ..+. ||+
T Consensus 187 ~iv~av~~~~~~~~~~~Pv~vKl~~~~~~~~~~~ia~~l~~aGad~I~~~n~~~~~~~~~~~~~-~~~~gG~sG~~~~~~ 265 (327)
T cd04738 187 ELLTAVKEERNKLGKKVPLLVKIAPDLSDEELEDIADVALEHGVDGIIATNTTISRPGLLRSPL-ANETGGLSGAPLKER 265 (327)
T ss_pred HHHHHHHHHHhhcccCCCeEEEeCCCCCHHHHHHHHHHHHHcCCcEEEEECCcccccccccccc-cCCCCccCChhhhHH
Confidence 44443333332 5899988863222226788999999999999974444322222111111 1111 232
Q ss_pred --HHHHHHHHHH--HcCCcccccccCHHHHHHHHhccCcEEEeccC
Q 004491 616 --LEVEMIDKAH--KMGLLTTPYAFNEGEAVKMAKAGADIIVAHMG 657 (749)
Q Consensus 616 --~EVemi~~A~--~~gl~T~~yvf~~eqa~~Ma~AGaDiiv~h~G 657 (749)
+-|..++++- +..+..+.=++|.+||.+|..+|||.+=+.-+
T Consensus 266 ~l~~v~~l~~~~~~~ipIi~~GGI~t~~da~e~l~aGAd~V~vg~~ 311 (327)
T cd04738 266 STEVLRELYKLTGGKIPIIGVGGISSGEDAYEKIRAGASLVQLYTG 311 (327)
T ss_pred HHHHHHHHHHHhCCCCcEEEECCCCCHHHHHHHHHcCCCHHhccHH
Confidence 2344444444 34577788899999999999999998765544
No 121
>PRK13125 trpA tryptophan synthase subunit alpha; Provisional
Probab=93.57 E-value=0.72 Score=48.29 Aligned_cols=70 Identities=14% Similarity=0.078 Sum_probs=55.3
Q ss_pred cccCHHH-HHHHHhccCcEEEeccCCCcccccccccccCHHHHHHHHHHHHHHHHHhCCCeEEEEccCCCCCHHHHHHHH
Q 004491 634 YAFNEGE-AVKMAKAGADIIVAHMGLTTSGSIGAKTALSLDESVDRVQAIADAAHRINPDAIVLCHGGPISSPSEAEFIL 712 (749)
Q Consensus 634 yvf~~eq-a~~Ma~AGaDiiv~h~GlT~gG~~Ga~~~~sl~~~~~~~~~i~~aa~~~~pdii~l~hGGPi~~p~d~~~~l 712 (749)
|+.++++ ++++.++|+|.++.|. +.+| +.+..+++.+.+++.+-++++++| |=+.++++++++
T Consensus 86 ~~~~~~~~i~~~~~~Gadgvii~d-------------lp~e-~~~~~~~~~~~~~~~Gl~~~~~v~--p~T~~e~l~~~~ 149 (244)
T PRK13125 86 YVDSLDNFLNMARDVGADGVLFPD-------------LLID-YPDDLEKYVEIIKNKGLKPVFFTS--PKFPDLLIHRLS 149 (244)
T ss_pred hhhCHHHHHHHHHHcCCCEEEECC-------------CCCC-cHHHHHHHHHHHHHcCCCEEEEEC--CCCCHHHHHHHH
Confidence 4678988 8899999999999992 2221 234567889999999999999998 767788999999
Q ss_pred hhCCCccEEe
Q 004491 713 KRTKGVHGFY 722 (749)
Q Consensus 713 ~~~~~~~Gf~ 722 (749)
+. .+||+
T Consensus 150 ~~---~~~~l 156 (244)
T PRK13125 150 KL---SPLFI 156 (244)
T ss_pred Hh---CCCEE
Confidence 76 35554
No 122
>PRK06806 fructose-bisphosphate aldolase; Provisional
Probab=93.53 E-value=4.8 Score=43.63 Aligned_cols=179 Identities=23% Similarity=0.307 Sum_probs=113.7
Q ss_pred hhhhhcCCcEEEEeccccccccCCccccccccccCchHHHHHhhhhhcCCCCCCceEEeeccCCCCCCHHHHHHHHHHcC
Q 004491 507 KFEEAGGVDLIVLYNSGRFRMAGRGSLAGLLPFADANAVVLEMANEVLPVVKEVPVLAGVCGTDPFRRVDYFLKQLESIG 586 (749)
Q Consensus 507 k~ae~gGaDli~~ynsGrfR~~G~~SlagllpygdaN~iv~e~~~eilp~v~~tPViaGv~atDP~~~~~~~l~~lk~~G 586 (749)
+.||+-++.+||-...+-.+ ++|+.....++..++++. .+||.-= .|=-.+. .++++..+.|
T Consensus 36 ~aAe~~~~Pvii~~~~~~~~---------~~~~~~~~~~~~~~a~~~-----~vpv~lH---lDH~~~~-e~i~~Al~~G 97 (281)
T PRK06806 36 KAAEELNSPIILQIAEVRLN---------HSPLHLIGPLMVAAAKQA-----KVPVAVH---FDHGMTF-EKIKEALEIG 97 (281)
T ss_pred HHHHHhCCCEEEEcCcchhc---------cCChHHHHHHHHHHHHHC-----CCCEEEE---CCCCCCH-HHHHHHHHcC
Confidence 56888899999977665544 234444456667777652 4576532 3434455 4777777889
Q ss_pred ccceecCCcccccch---hhhhhhhhcCCchHHHHHHHHHHHHcCCc------cc-----------ccccCHHHHHHHHh
Q 004491 587 FFGVQNFPTVGLFDG---NFRQNLEETGMGYGLEVEMIDKAHKMGLL------TT-----------PYAFNEGEAVKMAK 646 (749)
Q Consensus 587 f~GV~NfPTvgliDG---~fR~~LEe~G~gy~~EVemi~~A~~~gl~------T~-----------~yvf~~eqa~~Ma~ 646 (749)
|+-|| +|+ .|++|++.+ .++.+.||+.|.. -+ ..+.|++||++..+
T Consensus 98 ~tsVm-------~d~s~~~~~eni~~t-------~~v~~~a~~~gv~veaE~ghlG~~d~~~~~~g~s~t~~eea~~f~~ 163 (281)
T PRK06806 98 FTSVM-------FDGSHLPLEENIQKT-------KEIVELAKQYGATVEAEIGRVGGSEDGSEDIEMLLTSTTEAKRFAE 163 (281)
T ss_pred CCEEE-------EcCCCCCHHHHHHHH-------HHHHHHHHHcCCeEEEEeeeECCccCCcccccceeCCHHHHHHHHH
Confidence 98887 333 366666543 3455666665531 11 12579999999985
Q ss_pred -ccCcEEEeccCCCcccccccccccCHHHHHHHHHHHHHHHHHhCCCeEEEEccCCCCCHHHHHHHHhhCCCccEEecCc
Q 004491 647 -AGADIIVAHMGLTTSGSIGAKTALSLDESVDRVQAIADAAHRINPDAIVLCHGGPISSPSEAEFILKRTKGVHGFYGAS 725 (749)
Q Consensus 647 -AGaDiiv~h~GlT~gG~~Ga~~~~sl~~~~~~~~~i~~aa~~~~pdii~l~hGGPi~~p~d~~~~l~~~~~~~Gf~g~S 725 (749)
.|+|.|-+-.|-..|-.. .+..+.++ ++++|.+.. ++-+.+|||-=-++++++.+.+. ++.++--.|
T Consensus 164 ~tg~DyLAvaiG~~hg~~~-~~~~l~~~----~L~~i~~~~-----~iPlV~hG~SGI~~e~~~~~i~~--G~~kinv~T 231 (281)
T PRK06806 164 ETDVDALAVAIGNAHGMYN-GDPNLRFD----RLQEINDVV-----HIPLVLHGGSGISPEDFKKCIQH--GIRKINVAT 231 (281)
T ss_pred hhCCCEEEEccCCCCCCCC-CCCccCHH----HHHHHHHhc-----CCCEEEECCCCCCHHHHHHHHHc--CCcEEEEhH
Confidence 599999987776555221 12234443 455554432 45678899433789999998854 688888777
Q ss_pred cccc
Q 004491 726 SMER 729 (749)
Q Consensus 726 s~ER 729 (749)
.+=.
T Consensus 232 ~i~~ 235 (281)
T PRK06806 232 ATFN 235 (281)
T ss_pred HHHH
Confidence 7654
No 123
>PRK09195 gatY tagatose-bisphosphate aldolase; Reviewed
Probab=93.40 E-value=2.4 Score=46.10 Aligned_cols=184 Identities=18% Similarity=0.232 Sum_probs=114.7
Q ss_pred HhhcCCCeEEeccccchhh----hhhhhcCCcEEEEeccccccccCCccccccccccCchHHHHHhhhhhcCCCCCCceE
Q 004491 488 QIDKGLPIIGAGAGTGISA----KFEEAGGVDLIVLYNSGRFRMAGRGSLAGLLPFADANAVVLEMANEVLPVVKEVPVL 563 (749)
Q Consensus 488 ~i~~~~piig~gaGtGlsA----k~ae~gGaDli~~ynsGrfR~~G~~SlagllpygdaN~iv~e~~~eilp~v~~tPVi 563 (749)
.-++|-.|...-.-.-.++ +.||+-++.+||-..-+.++-.| +...=.++.+++++ . ++||.
T Consensus 13 A~~~~yaV~AfN~~n~e~~~avi~AAee~~sPvIiq~~~~~~~~~g---------~~~~~~~~~~~A~~----~-~VPV~ 78 (284)
T PRK09195 13 AQRGGYAVPAFNIHNLETMQVVVETAAELHSPVIIAGTPGTFSYAG---------TEYLLAIVSAAAKQ----Y-HHPLA 78 (284)
T ss_pred HHHcCceEEEEEeCCHHHHHHHHHHHHHhCCCEEEEcChhHHhhCC---------HHHHHHHHHHHHHH----C-CCCEE
Confidence 3344444433333333333 56889999999988777655433 22122456666655 2 46875
Q ss_pred EeeccCCCCCCHHHHHHHHHHcCccceecCCcccccchh---hhhhhhhcCCchHHHHHHHHHHHHcCCc------cc--
Q 004491 564 AGVCGTDPFRRVDYFLKQLESIGFFGVQNFPTVGLFDGN---FRQNLEETGMGYGLEVEMIDKAHKMGLL------TT-- 632 (749)
Q Consensus 564 aGv~atDP~~~~~~~l~~lk~~Gf~GV~NfPTvgliDG~---fR~~LEe~G~gy~~EVemi~~A~~~gl~------T~-- 632 (749)
-= .|=..+. .++++..+.||+.| +|||+ |-+|++.| -++.+.||..|.. .+
T Consensus 79 lH---LDHg~~~-e~i~~Ai~~GftSV-------M~DgS~l~~eeNi~~T-------~~vv~~Ah~~gv~VEaElG~vgg 140 (284)
T PRK09195 79 LH---LDHHEKF-DDIAQKVRSGVRSV-------MIDGSHLPFAQNISLV-------KEVVDFCHRFDVSVEAELGRLGG 140 (284)
T ss_pred EE---CCCCCCH-HHHHHHHHcCCCEE-------EeCCCCCCHHHHHHHH-------HHHHHHHHHcCCEEEEEEecccC
Confidence 33 3444444 55666777899776 78875 45555433 3456667776632 11
Q ss_pred -----------ccccCHHHHHHHHh-ccCcEEEeccCCCcccccccccccCHHHHHHHHHHHHHHHHHhCCCeEEEEccC
Q 004491 633 -----------PYAFNEGEAVKMAK-AGADIIVAHMGLTTSGSIGAKTALSLDESVDRVQAIADAAHRINPDAIVLCHGG 700 (749)
Q Consensus 633 -----------~yvf~~eqa~~Ma~-AGaDiiv~h~GlT~gG~~Ga~~~~sl~~~~~~~~~i~~aa~~~~pdii~l~hGG 700 (749)
.+..++|||+++.+ -|+|.|-+-+|-..|-..| +..+.+ +++++|.++. ++-+..|||
T Consensus 141 ~e~~~~~~~~~~~~T~peea~~Fv~~TgvD~LAvaiGt~HG~y~~-~p~Ld~----~~L~~I~~~~-----~vPLVLHGg 210 (284)
T PRK09195 141 QEDDLQVDEADALYTDPAQAREFVEATGIDSLAVAIGTAHGMYKG-EPKLDF----DRLENIRQWV-----NIPLVLHGA 210 (284)
T ss_pred cccCcccccccccCCCHHHHHHHHHHHCcCEEeeccCccccccCC-CCcCCH----HHHHHHHHHh-----CCCeEEecC
Confidence 12458899999985 6999999999988877766 334554 4778886654 455667999
Q ss_pred CCCCHHHHHHHHh
Q 004491 701 PISSPSEAEFILK 713 (749)
Q Consensus 701 Pi~~p~d~~~~l~ 713 (749)
-=...++++...+
T Consensus 211 SG~~~e~~~~ai~ 223 (284)
T PRK09195 211 SGLPTKDIQQTIK 223 (284)
T ss_pred CCCCHHHHHHHHH
Confidence 6555777776653
No 124
>TIGR02631 xylA_Arthro xylose isomerase, Arthrobacter type. This model describes a D-xylose isomerase that is also active as a D-glucose isomerase. It is tetrameric and dependent on a divalent cation Mg2+, Co2+ or Mn2+ as characterized in Arthrobacter. Members of this family differ substantially from the D-xylose isomerases of family TIGR02630.
Probab=93.30 E-value=1.7 Score=48.89 Aligned_cols=171 Identities=20% Similarity=0.287 Sum_probs=100.4
Q ss_pred eeccCCCC-------CCHHHHHHHHHHcCccceecCCc-----ccccc-------hhhhhhhhhcCCchHH-HHHHH--H
Q 004491 565 GVCGTDPF-------RRVDYFLKQLESIGFFGVQNFPT-----VGLFD-------GNFRQNLEETGMGYGL-EVEMI--D 622 (749)
Q Consensus 565 Gv~atDP~-------~~~~~~l~~lk~~Gf~GV~NfPT-----vgliD-------G~fR~~LEe~G~gy~~-EVemi--~ 622 (749)
|-.+.||| .+..+.+++++++||.||. |+. .+.-+ ..+|+.|+++||...- -.++. .
T Consensus 17 ~~~~~~~~g~~~~~~~~~~e~i~~la~~GfdgVE-~~~~dl~P~~~~~~e~~~~~~~lk~~L~~~GL~v~~v~~nl~~~~ 95 (382)
T TIGR02631 17 GWVGRDPFGDATRTALDPVEAVHKLAELGAYGVT-FHDDDLIPFGAPPQERDQIVRRFKKALDETGLKVPMVTTNLFSHP 95 (382)
T ss_pred CCCCCCCCCCCCCCCcCHHHHHHHHHHhCCCEEE-ecccccCCCCCChhHHHHHHHHHHHHHHHhCCeEEEeeccccCCc
Confidence 34566777 3678999999999999996 331 22222 3688889999886421 00000 0
Q ss_pred HHHHcCCcccccccCH----------HHHHH-HHhccCcEEEeccCCCccccccc-ccccCHHHHHHHHHHHHHHHHHhC
Q 004491 623 KAHKMGLLTTPYAFNE----------GEAVK-MAKAGADIIVAHMGLTTSGSIGA-KTALSLDESVDRVQAIADAAHRIN 690 (749)
Q Consensus 623 ~A~~~gl~T~~yvf~~----------eqa~~-Ma~AGaDiiv~h~GlT~gG~~Ga-~~~~sl~~~~~~~~~i~~aa~~~~ 690 (749)
.....+ +|-+ ++ +++.. ..+.|++.+++|.|......-.. ......+.+++-++++.+.|.+..
T Consensus 96 ~~~~g~-las~---d~~vR~~ai~~~kraId~A~eLGa~~v~v~~G~~g~~~~~~~d~~~a~~~~~e~L~~lae~A~~~G 171 (382)
T TIGR02631 96 VFKDGG-FTSN---DRSVRRYALRKVLRNMDLGAELGAETYVVWGGREGAEYDGAKDVRAALDRMREALNLLAAYAEDQG 171 (382)
T ss_pred cccCCC-CCCC---CHHHHHHHHHHHHHHHHHHHHhCCCEEEEccCCCCCcCccccCHHHHHHHHHHHHHHHHHHHHhhC
Confidence 000001 1111 12 12222 35889999999988543322111 112345566667777888888776
Q ss_pred CCeEEEE---ccC-----CCCCHHHHHHHHhhCC--CccEE---ecCcccccchHHHHHHHHH
Q 004491 691 PDAIVLC---HGG-----PISSPSEAEFILKRTK--GVHGF---YGASSMERLPVEQAITSTM 740 (749)
Q Consensus 691 pdii~l~---hGG-----Pi~~p~d~~~~l~~~~--~~~Gf---~g~Ss~ERlP~E~ai~~~~ 740 (749)
.+|-+.+ ..= -+.|++++..+++.+. +..|. ++...|+......+|....
T Consensus 172 ~GV~laLEp~p~~~~~~~ll~T~~~al~li~~v~~pn~vgl~lDvgH~~~~g~n~~~~i~~~l 234 (382)
T TIGR02631 172 YGLRFALEPKPNEPRGDILLPTVGHALAFIETLERPELFGLNPETGHEQMAGLNFTHGIAQAL 234 (382)
T ss_pred CCcEEEEccCCCCCCcceecCCHHHHHHHHHHcCCccceeEEEechhHhhcCCCHHHHHHHHH
Confidence 6765555 222 4789999999997753 22244 4666777777777776553
No 125
>TIGR00262 trpA tryptophan synthase, alpha subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.
Probab=93.28 E-value=0.9 Score=48.27 Aligned_cols=92 Identities=20% Similarity=0.280 Sum_probs=70.2
Q ss_pred hhhhhhcCCchHHHHHHHHHHHHc--CC--cccccccCH-------HHHHHHHhccCcEEEeccCCCcccccccccccCH
Q 004491 604 RQNLEETGMGYGLEVEMIDKAHKM--GL--LTTPYAFNE-------GEAVKMAKAGADIIVAHMGLTTSGSIGAKTALSL 672 (749)
Q Consensus 604 R~~LEe~G~gy~~EVemi~~A~~~--gl--~T~~yvf~~-------eqa~~Ma~AGaDiiv~h~GlT~gG~~Ga~~~~sl 672 (749)
.++| +.|+..++=.++++.-++. ++ .-+.| +|+ +-.++.+++|+|-|++| .++.
T Consensus 62 ~~al-~~G~~~~~~~~~v~~ir~~~~~~plv~m~Y-~Npi~~~G~e~f~~~~~~aGvdgviip-------------Dlp~ 126 (256)
T TIGR00262 62 LRAL-RAGMTPEKCFELLKKVRQKHPNIPIGLLTY-YNLIFRKGVEEFYAKCKEVGVDGVLVA-------------DLPL 126 (256)
T ss_pred HHHH-HcCCCHHHHHHHHHHHHhcCCCCCEEEEEe-ccHHhhhhHHHHHHHHHHcCCCEEEEC-------------CCCh
Confidence 3455 7899999999999998865 22 22222 344 44788899999999999 3344
Q ss_pred HHHHHHHHHHHHHHHHhCCCeEEEEccCCCCCHHHHHHHHhhCC
Q 004491 673 DESVDRVQAIADAAHRINPDAIVLCHGGPISSPSEAEFILKRTK 716 (749)
Q Consensus 673 ~~~~~~~~~i~~aa~~~~pdii~l~hGGPi~~p~d~~~~l~~~~ 716 (749)
+ ...++.+.+++.+.+.+.+|- |-++++.++++.+...
T Consensus 127 e----e~~~~~~~~~~~gl~~i~lv~--P~T~~eri~~i~~~~~ 164 (256)
T TIGR00262 127 E----ESGDLVEAAKKHGVKPIFLVA--PNADDERLKQIAEKSQ 164 (256)
T ss_pred H----HHHHHHHHHHHCCCcEEEEEC--CCCCHHHHHHHHHhCC
Confidence 4 457788889999999999986 8888999999998755
No 126
>PRK12857 fructose-1,6-bisphosphate aldolase; Reviewed
Probab=93.26 E-value=3.2 Score=45.15 Aligned_cols=166 Identities=21% Similarity=0.309 Sum_probs=107.9
Q ss_pred hhhhhcCCcEEEEeccccccccCCccccccccccCchHHHHHhhhhhcCCCCCCceEEeeccCCCCCCHHHHHHHHHHcC
Q 004491 507 KFEEAGGVDLIVLYNSGRFRMAGRGSLAGLLPFADANAVVLEMANEVLPVVKEVPVLAGVCGTDPFRRVDYFLKQLESIG 586 (749)
Q Consensus 507 k~ae~gGaDli~~ynsGrfR~~G~~SlagllpygdaN~iv~e~~~eilp~v~~tPViaGv~atDP~~~~~~~l~~lk~~G 586 (749)
+.||+-+..+||-.+.+..+..| +..-=.++..+|++. .+||.- -.|=-.+.+ ++.+..+.|
T Consensus 36 ~AAee~~sPvIlq~~~~~~~~~g---------~~~~~~~~~~~A~~~-----~VPVal---HLDH~~~~e-~i~~ai~~G 97 (284)
T PRK12857 36 AAAEAEKSPVIIQASQGAIKYAG---------IEYISAMVRTAAEKA-----SVPVAL---HLDHGTDFE-QVMKCIRNG 97 (284)
T ss_pred HHHHHhCCCEEEEechhHhhhCC---------HHHHHHHHHHHHHHC-----CCCEEE---ECCCCCCHH-HHHHHHHcC
Confidence 57888899999988777666444 221223455566442 357753 244444555 455666679
Q ss_pred ccceecCCcccccchh---hhhhhhhcCCchHHHHHHHHHHHHcCCc------cc-------------ccccCHHHHHHH
Q 004491 587 FFGVQNFPTVGLFDGN---FRQNLEETGMGYGLEVEMIDKAHKMGLL------TT-------------PYAFNEGEAVKM 644 (749)
Q Consensus 587 f~GV~NfPTvgliDG~---fR~~LEe~G~gy~~EVemi~~A~~~gl~------T~-------------~yvf~~eqa~~M 644 (749)
|+.| +|||+ |.+|++.| -|..+.||.+|.. .+ .+-.+++||+++
T Consensus 98 ftSV-------M~DgS~lp~eeNi~~T-------~~vv~~Ah~~gvsVEaElG~vgg~e~~~~~~~~~~~~T~pe~a~~F 163 (284)
T PRK12857 98 FTSV-------MIDGSKLPLEENIALT-------KKVVEIAHAVGVSVEAELGKIGGTEDDITVDEREAAMTDPEEARRF 163 (284)
T ss_pred CCeE-------EEeCCCCCHHHHHHHH-------HHHHHHHHHcCCEEEEEeeecCCccCCCCcccchhhcCCHHHHHHH
Confidence 8776 78875 66666544 3556777766542 11 224588999999
Q ss_pred Hh-ccCcEEEeccCCCcccccccccccCHHHHHHHHHHHHHHHHHhCCCeEEEEccCCCCCHHHHHHHHhh
Q 004491 645 AK-AGADIIVAHMGLTTSGSIGAKTALSLDESVDRVQAIADAAHRINPDAIVLCHGGPISSPSEAEFILKR 714 (749)
Q Consensus 645 a~-AGaDiiv~h~GlT~gG~~Ga~~~~sl~~~~~~~~~i~~aa~~~~pdii~l~hGGPi~~p~d~~~~l~~ 714 (749)
.+ -|+|.|-+=+|-..|-..| +..+.++ ++++|.++. ++-+..|||-=...++++...+.
T Consensus 164 v~~TgvD~LAvaiGt~HG~y~~-~p~Ld~~----~L~~i~~~~-----~vPLVlHGgSG~~~e~~~~ai~~ 224 (284)
T PRK12857 164 VEETGVDALAIAIGTAHGPYKG-EPKLDFD----RLAKIKELV-----NIPIVLHGSSGVPDEAIRKAISL 224 (284)
T ss_pred HHHHCCCEEeeccCccccccCC-CCcCCHH----HHHHHHHHh-----CCCEEEeCCCCCCHHHHHHHHHc
Confidence 85 5999999999988887766 3345544 677776543 34456799976677888876643
No 127
>PLN02460 indole-3-glycerol-phosphate synthase
Probab=93.19 E-value=0.32 Score=53.91 Aligned_cols=177 Identities=14% Similarity=0.223 Sum_probs=111.1
Q ss_pred hhhhhhhcCCcEEEEeccccccccCCccccccccccCchHHHHHhhhhhcCCCCCCceEEeeccCCCCCCHHHHHHHHHH
Q 004491 505 SAKFEEAGGVDLIVLYNSGRFRMAGRGSLAGLLPFADANAVVLEMANEVLPVVKEVPVLAGVCGTDPFRRVDYFLKQLES 584 (749)
Q Consensus 505 sAk~ae~gGaDli~~ynsGrfR~~G~~SlagllpygdaN~iv~e~~~eilp~v~~tPViaGv~atDP~~~~~~~l~~lk~ 584 (749)
.||.=+++||+-|=++--.+| |+-+.+-+. -.|+.. | +.|||.= |-..+ +.=+.+-+.
T Consensus 144 iA~~Ye~~GA~aISVLTd~~~-------------F~Gs~e~L~-~vr~~~--v-~lPvLrK----DFIID-~yQI~eAr~ 201 (338)
T PLN02460 144 IAQAYEKGGAACLSVLTDEKY-------------FQGSFENLE-AIRNAG--V-KCPLLCK----EFIVD-AWQIYYARS 201 (338)
T ss_pred HHHHHHhCCCcEEEEecCcCc-------------CCCCHHHHH-HHHHcC--C-CCCEeec----cccCC-HHHHHHHHH
Confidence 467778999999988876665 333333332 233321 2 4677763 33322 233556677
Q ss_pred cCccceecCCcccccchhhhhhhhhcCCchHHHHHHHHHHHHcCCcccccccCHHHHHHHHhc-cCcEEEeccCCCcccc
Q 004491 585 IGFFGVQNFPTVGLFDGNFRQNLEETGMGYGLEVEMIDKAHKMGLLTTPYAFNEGEAVKMAKA-GADIIVAHMGLTTSGS 663 (749)
Q Consensus 585 ~Gf~GV~NfPTvgliDG~fR~~LEe~G~gy~~EVemi~~A~~~gl~T~~yvf~~eqa~~Ma~A-GaDiiv~h~GlT~gG~ 663 (749)
+|=..|- ||-.-+- -++=-++++.|+++||-.+-=|.|++|...-.++ ||++|-++-
T Consensus 202 ~GADAVL------LIaaiL~---------~~~L~~l~~~A~~LGme~LVEVH~~~ElerAl~~~ga~iIGINN------- 259 (338)
T PLN02460 202 KGADAIL------LIAAVLP---------DLDIKYMLKICKSLGMAALIEVHDEREMDRVLGIEGVELIGINN------- 259 (338)
T ss_pred cCCCcHH------HHHHhCC---------HHHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHhcCCCCEEEEeC-------
Confidence 7766542 3332221 1122468999999999999999999999999998 999986652
Q ss_pred cccccccCHHHHHHHHHHHHHHH--HHhC-CCeEEEEccCCCCCHHHHHHHHhhCCCccEEecCcccccch
Q 004491 664 IGAKTALSLDESVDRVQAIADAA--HRIN-PDAIVLCHGGPISSPSEAEFILKRTKGVHGFYGASSMERLP 731 (749)
Q Consensus 664 ~Ga~~~~sl~~~~~~~~~i~~aa--~~~~-pdii~l~hGGPi~~p~d~~~~l~~~~~~~Gf~g~Ss~ERlP 731 (749)
.+-.|++--.....++...- ..+. +++++..-.| |.+|+|++++.+ .+++||.=|+|+=|=|
T Consensus 260 ---RdL~Tf~vDl~~t~~L~~~~~~~~i~~~~~~~VsESG-I~t~~Dv~~l~~--~GadAvLVGEsLMr~~ 324 (338)
T PLN02460 260 ---RSLETFEVDISNTKKLLEGERGEQIREKGIIVVGESG-LFTPDDVAYVQN--AGVKAVLVGESLVKQD 324 (338)
T ss_pred ---CCCCcceECHHHHHHHhhhccccccCCCCeEEEECCC-CCCHHHHHHHHH--CCCCEEEECHHHhCCC
Confidence 11222332333444443311 1343 4665555554 999999999974 5789998888876643
No 128
>cd02911 arch_FMN Archeal FMN-binding domain. This family of archaeal proteins are part of the NAD(P)H-dependent flavin oxidoreductase (oxidored) FMN-binding family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN. The specific function of this group is unknown.
Probab=93.17 E-value=1.3 Score=46.44 Aligned_cols=142 Identities=16% Similarity=0.098 Sum_probs=82.8
Q ss_pred CCceEEeeccCCCCCCHHHHHHHHHHcCcccee-cC--CcccccchhhhhhhhhcCCchHHHHHHHHHHHHcCCcccc--
Q 004491 559 EVPVLAGVCGTDPFRRVDYFLKQLESIGFFGVQ-NF--PTVGLFDGNFRQNLEETGMGYGLEVEMIDKAHKMGLLTTP-- 633 (749)
Q Consensus 559 ~tPViaGv~atDP~~~~~~~l~~lk~~Gf~GV~-Nf--PTvgliDG~fR~~LEe~G~gy~~EVemi~~A~~~gl~T~~-- 633 (749)
+.||+.-+++.||- .+.+-.+.+.+. +.+|. |+ |-.-...+...+.|=+ -.++=.|+++..++.++.-+.
T Consensus 72 ~~p~~vqi~g~~~~-~~~~aa~~~~~~-~~~ielN~gCP~~~v~~~g~G~~Ll~---~p~~l~eiv~avr~~~~pVsvKi 146 (233)
T cd02911 72 NVLVGVNVRSSSLE-PLLNAAALVAKN-AAILEINAHCRQPEMVEAGAGEALLK---DPERLSEFIKALKETGVPVSVKI 146 (233)
T ss_pred CCeEEEEecCCCHH-HHHHHHHHHhhc-CCEEEEECCCCcHHHhcCCcchHHcC---CHHHHHHHHHHHHhcCCCEEEEE
Confidence 57999999999993 455556666553 45442 33 6554444333333311 235667788888776543211
Q ss_pred ---c-ccCHHHHHHHHhccCcEEEeccCCCcccccccccccCHHHHHHHHHHHHHHHHHhCCCeEEEEccCCCCCHHHHH
Q 004491 634 ---Y-AFNEGEAVKMAKAGADIIVAHMGLTTSGSIGAKTALSLDESVDRVQAIADAAHRINPDAIVLCHGGPISSPSEAE 709 (749)
Q Consensus 634 ---y-vf~~eqa~~Ma~AGaDiiv~h~GlT~gG~~Ga~~~~sl~~~~~~~~~i~~aa~~~~pdii~l~hGGPi~~p~d~~ 709 (749)
+ .-..+-|+.+.++|+|+|-+|-+.. | ....+ +. .++++.++-|+. -|-|.+++|++
T Consensus 147 r~g~~~~~~~la~~l~~aG~d~ihv~~~~~--g-----~~ad~----~~-------I~~i~~~ipVIg-nGgI~s~eda~ 207 (233)
T cd02911 147 RAGVDVDDEELARLIEKAGADIIHVDAMDP--G-----NHADL----KK-------IRDISTELFIIG-NNSVTTIESAK 207 (233)
T ss_pred cCCcCcCHHHHHHHHHHhCCCEEEECcCCC--C-----CCCcH----HH-------HHHhcCCCEEEE-ECCcCCHHHHH
Confidence 1 1235667778899999875553322 2 01111 12 222224555544 46699999999
Q ss_pred HHHhhCCCccEEecCcc
Q 004491 710 FILKRTKGVHGFYGASS 726 (749)
Q Consensus 710 ~~l~~~~~~~Gf~g~Ss 726 (749)
.++. .+++|..=|..
T Consensus 208 ~~l~--~GaD~VmiGR~ 222 (233)
T cd02911 208 EMFS--YGADMVSVARA 222 (233)
T ss_pred HHHH--cCCCEEEEcCC
Confidence 9996 36888765554
No 129
>PRK09997 hydroxypyruvate isomerase; Provisional
Probab=93.07 E-value=1.2 Score=46.18 Aligned_cols=137 Identities=15% Similarity=0.146 Sum_probs=77.3
Q ss_pred CCHHHHHHHHHHcCccceecCCcccccchhhhhhhhhcCCchHH-HHHH--HHHHHHcCCccccc-----ccCHHHHHH-
Q 004491 573 RRVDYFLKQLESIGFFGVQNFPTVGLFDGNFRQNLEETGMGYGL-EVEM--IDKAHKMGLLTTPY-----AFNEGEAVK- 643 (749)
Q Consensus 573 ~~~~~~l~~lk~~Gf~GV~NfPTvgliDG~fR~~LEe~G~gy~~-EVem--i~~A~~~gl~T~~y-----vf~~eqa~~- 643 (749)
.+++..++++++.||.||-=+.....---.+|+.|++.|+...- .+-. ... ...++...+- .-..+++.+
T Consensus 15 ~~l~~~l~~~a~~Gf~~VEl~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~~ 93 (258)
T PRK09997 15 YDFLARFEKAAQCGFRGVEFMFPYDYDIEELKQVLASNKLEHTLHNLPAGDWAA-GERGIACIPGREEEFRDGVAAAIRY 93 (258)
T ss_pred CCHHHHHHHHHHhCCCEEEEcCCCCCCHHHHHHHHHHcCCcEEEEcCCCCcccc-CcCccccCCCcHHHHHHHHHHHHHH
Confidence 35889999999999999984322222225677777777776421 0000 000 0000000000 000123323
Q ss_pred HHhccCcEEEeccCCCcccccccccccCHHHHHHHHHHHHHHHHHhCCCeEEEEc--------cCCCCCHHHHHHHHhhC
Q 004491 644 MAKAGADIIVAHMGLTTSGSIGAKTALSLDESVDRVQAIADAAHRINPDAIVLCH--------GGPISSPSEAEFILKRT 715 (749)
Q Consensus 644 Ma~AGaDiiv~h~GlT~gG~~Ga~~~~sl~~~~~~~~~i~~aa~~~~pdii~l~h--------GGPi~~p~d~~~~l~~~ 715 (749)
+.+.|+..|+.+.|....+ .......+..++..+++.+.|.+. ++.+..| +-.+.+++++..+++.+
T Consensus 94 a~~lga~~i~~~~g~~~~~---~~~~~~~~~~~~~l~~l~~~a~~~--Gv~l~lE~~n~~~~~~~~~~~~~~~~~ll~~v 168 (258)
T PRK09997 94 ARALGNKKINCLVGKTPAG---FSSEQIHATLVENLRYAANMLMKE--DILLLIEPINHFDIPGFHLTGTRQALKLIDDV 168 (258)
T ss_pred HHHhCCCEEEECCCCCCCC---CCHHHHHHHHHHHHHHHHHHHHHc--CCEEEEEeCCCcCCCCCccCCHHHHHHHHHHh
Confidence 3478999998887643222 122233556677777887777764 4555554 45689999999999875
No 130
>PRK12595 bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase; Reviewed
Probab=92.87 E-value=0.81 Score=51.07 Aligned_cols=84 Identities=19% Similarity=0.207 Sum_probs=61.1
Q ss_pred cCCchHHHHHHHHHHHHcCCcccccccCHHHHHHHHhccCcEEEeccCCC-----------ccccccccccc--CHHHHH
Q 004491 610 TGMGYGLEVEMIDKAHKMGLLTTPYAFNEGEAVKMAKAGADIIVAHMGLT-----------TSGSIGAKTAL--SLDESV 676 (749)
Q Consensus 610 ~G~gy~~EVemi~~A~~~gl~T~~yvf~~eqa~~Ma~AGaDiiv~h~GlT-----------~gG~~Ga~~~~--sl~~~~ 676 (749)
.|+|++.=-++-+.+++.|+..+.=+|+++++..+.+. +|++=+=-+.. +|--+-.++.. |++|-.
T Consensus 164 ~g~~~e~l~~L~~~~~~~Gl~~~t~v~d~~~~~~l~~~-vd~lkI~s~~~~n~~LL~~~a~~gkPVilk~G~~~t~~e~~ 242 (360)
T PRK12595 164 QGLGVEGLKILKQVADEYGLAVISEIVNPADVEVALDY-VDVIQIGARNMQNFELLKAAGRVNKPVLLKRGLSATIEEFI 242 (360)
T ss_pred cCCCHHHHHHHHHHHHHcCCCEEEeeCCHHHHHHHHHh-CCeEEECcccccCHHHHHHHHccCCcEEEeCCCCCCHHHHH
Confidence 45566555567778999999999999999999999999 99986643332 24444556664 888887
Q ss_pred HHHHHHHHHHHHhCCCeEEEEc
Q 004491 677 DRVQAIADAAHRINPDAIVLCH 698 (749)
Q Consensus 677 ~~~~~i~~aa~~~~pdii~l~h 698 (749)
..++.|.+. =|++ |+|||
T Consensus 243 ~Ave~i~~~---Gn~~-i~L~e 260 (360)
T PRK12595 243 YAAEYIMSQ---GNGQ-IILCE 260 (360)
T ss_pred HHHHHHHHC---CCCC-EEEEC
Confidence 777777432 2444 78888
No 131
>PRK08185 hypothetical protein; Provisional
Probab=92.83 E-value=2.4 Score=46.02 Aligned_cols=165 Identities=22% Similarity=0.306 Sum_probs=100.3
Q ss_pred hhhhhcCCcEEEEeccccccccCCccccccccccCchHHHHHhhhhhcCCCCCCceEEeeccCCCCCCHHHHHHHHHHcC
Q 004491 507 KFEEAGGVDLIVLYNSGRFRMAGRGSLAGLLPFADANAVVLEMANEVLPVVKEVPVLAGVCGTDPFRRVDYFLKQLESIG 586 (749)
Q Consensus 507 k~ae~gGaDli~~ynsGrfR~~G~~SlagllpygdaN~iv~e~~~eilp~v~~tPViaGv~atDP~~~~~~~l~~lk~~G 586 (749)
+.||+-+..+||-...|-.+..|. + .=.++.+++++. .+||.-= .|=-.+.+ .+++.-+.|
T Consensus 31 ~AAee~~sPvIl~~~~~~~~~~~~-------~---~~~~~~~~a~~~-----~vPV~lH---LDHg~~~e-~i~~ai~~G 91 (283)
T PRK08185 31 EEAEANNAPAIIAIHPNELDFLGD-------N---FFAYVRERAKRS-----PVPFVIH---LDHGATIE-DVMRAIRCG 91 (283)
T ss_pred HHHHHhCCCEEEEeCcchhhhccH-------H---HHHHHHHHHHHC-----CCCEEEE---CCCCCCHH-HHHHHHHcC
Confidence 678999999999888887765441 1 123345566542 4686543 33333444 455666789
Q ss_pred ccceecCCcccccchh---hhhhhhhcCCchHHHHHHHHHHHHcCC--------cc-----------cccccCHHHHHHH
Q 004491 587 FFGVQNFPTVGLFDGN---FRQNLEETGMGYGLEVEMIDKAHKMGL--------LT-----------TPYAFNEGEAVKM 644 (749)
Q Consensus 587 f~GV~NfPTvgliDG~---fR~~LEe~G~gy~~EVemi~~A~~~gl--------~T-----------~~yvf~~eqa~~M 644 (749)
|+.| ++||+ |.+|++.+ .++.+.||..|. +. -.+..++|||+++
T Consensus 92 f~SV-------M~D~S~l~~eeNi~~t-------~~vv~~a~~~gv~vE~ElG~vg~~e~~~~~~~~~~~~t~peea~~f 157 (283)
T PRK08185 92 FTSV-------MIDGSLLPYEENVALT-------KEVVELAHKVGVSVEGELGTIGNTGTSIEGGVSEIIYTDPEQAEDF 157 (283)
T ss_pred CCEE-------EEeCCCCCHHHHHHHH-------HHHHHHHHHcCCeEEEEEeeccCcccccccccccccCCCHHHHHHH
Confidence 8876 57764 44444322 344555555432 11 1224589999999
Q ss_pred Hhc-cCcEEEeccCCCccccccc-ccccCHHHHHHHHHHHHHHHHHhCCCeEEEEccCCCCCHHHHHHHHh
Q 004491 645 AKA-GADIIVAHMGLTTSGSIGA-KTALSLDESVDRVQAIADAAHRINPDAIVLCHGGPISSPSEAEFILK 713 (749)
Q Consensus 645 a~A-GaDiiv~h~GlT~gG~~Ga-~~~~sl~~~~~~~~~i~~aa~~~~pdii~l~hGGPi~~p~d~~~~l~ 713 (749)
.+. |+|.|-+=+|-..|=..+. +..++ .+++++|.++. ++-+..|||-=...+|++...+
T Consensus 158 ~~~TgvD~LAvaiGt~HG~y~~~~kp~L~----~e~l~~I~~~~-----~iPLVlHGgsg~~~e~~~~ai~ 219 (283)
T PRK08185 158 VSRTGVDTLAVAIGTAHGIYPKDKKPELQ----MDLLKEINERV-----DIPLVLHGGSANPDAEIAESVQ 219 (283)
T ss_pred HHhhCCCEEEeccCcccCCcCCCCCCCcC----HHHHHHHHHhh-----CCCEEEECCCCCCHHHHHHHHH
Confidence 988 9999999777333322221 33344 66777886643 5667789996455777776653
No 132
>TIGR01858 tag_bisphos_ald class II aldolase, tagatose bisphosphate family. This model describes tagatose-1,6-bisphosphate aldolases, and perhaps other closely related class II aldolases. This tetrameric, Zn2+-dependent enzyme is related to the class II fructose bisphosphate aldolase; fructose 1,6-bisphosphate and tagatose 1,6 bisphosphate differ only in chirality at C4.
Probab=92.81 E-value=3.7 Score=44.57 Aligned_cols=165 Identities=18% Similarity=0.260 Sum_probs=108.3
Q ss_pred hhhhhcCCcEEEEeccccccccCCccccccccccCchHHHHHhhhhhcCCCCCCceEEeeccCCCCCCHHHHHHHHHHcC
Q 004491 507 KFEEAGGVDLIVLYNSGRFRMAGRGSLAGLLPFADANAVVLEMANEVLPVVKEVPVLAGVCGTDPFRRVDYFLKQLESIG 586 (749)
Q Consensus 507 k~ae~gGaDli~~ynsGrfR~~G~~SlagllpygdaN~iv~e~~~eilp~v~~tPViaGv~atDP~~~~~~~l~~lk~~G 586 (749)
+.||+-++.+||-.+-|.++..|...+ =.++..++++. .+||.-= .|=-.+. +.+++..+.|
T Consensus 34 ~AAee~~sPvIlq~s~~~~~~~~~~~~---------~~~~~~~a~~~-----~VPValH---LDHg~~~-e~i~~ai~~G 95 (282)
T TIGR01858 34 ETAAEMRSPVILAGTPGTFKHAGTEYI---------VALCSAASTTY-----NMPLALH---LDHHESL-DDIRQKVHAG 95 (282)
T ss_pred HHHHHhCCCEEEEeCccHHhhCCHHHH---------HHHHHHHHHHC-----CCCEEEE---CCCCCCH-HHHHHHHHcC
Confidence 568999999999888877765442222 24666666542 3587543 3433344 4566777779
Q ss_pred ccceecCCcccccchh---hhhhhhhcCCchHHHHHHHHHHHHcCCcc-------------------cccccCHHHHHHH
Q 004491 587 FFGVQNFPTVGLFDGN---FRQNLEETGMGYGLEVEMIDKAHKMGLLT-------------------TPYAFNEGEAVKM 644 (749)
Q Consensus 587 f~GV~NfPTvgliDG~---fR~~LEe~G~gy~~EVemi~~A~~~gl~T-------------------~~yvf~~eqa~~M 644 (749)
|+.| +|||+ |.+|++.| -|..+.||..|+.. -.+-.+++||+++
T Consensus 96 FtSV-------M~DgS~lp~eeNi~~T-------~~vv~~Ah~~gv~VEaElG~vgg~e~~~~~~~~~~~~T~peea~~F 161 (282)
T TIGR01858 96 VRSA-------MIDGSHFPFAQNVKLV-------KEVVDFCHRQDCSVEAELGRLGGVEDDLSVDEEDALYTDPQEAKEF 161 (282)
T ss_pred CCEE-------eecCCCCCHHHHHHHH-------HHHHHHHHHcCCeEEEEEEecCCccCCCccccchhccCCHHHHHHH
Confidence 9876 67774 66666544 24456666665320 1335688999999
Q ss_pred H-hccCcEEEeccCCCcccccccccccCHHHHHHHHHHHHHHHHHhCCCeEEEEccCCCCCHHHHHHHHh
Q 004491 645 A-KAGADIIVAHMGLTTSGSIGAKTALSLDESVDRVQAIADAAHRINPDAIVLCHGGPISSPSEAEFILK 713 (749)
Q Consensus 645 a-~AGaDiiv~h~GlT~gG~~Ga~~~~sl~~~~~~~~~i~~aa~~~~pdii~l~hGGPi~~p~d~~~~l~ 713 (749)
. +-|+|.|-+-+|-..|-..+ +..+.+ +++++|.++. ++-+..|||-=...++++...+
T Consensus 162 v~~TgvD~LAvaiGt~HG~yk~-~p~Ldf----~~L~~I~~~~-----~iPLVlHGgSG~~~e~~~~ai~ 221 (282)
T TIGR01858 162 VEATGVDSLAVAIGTAHGLYKK-TPKLDF----DRLAEIREVV-----DVPLVLHGASDVPDEDVRRTIE 221 (282)
T ss_pred HHHHCcCEEecccCccccCcCC-CCccCH----HHHHHHHHHh-----CCCeEEecCCCCCHHHHHHHHH
Confidence 8 58999999999988887765 223444 4777776544 3445679996666777776653
No 133
>PRK10415 tRNA-dihydrouridine synthase B; Provisional
Probab=92.71 E-value=3.3 Score=45.29 Aligned_cols=152 Identities=14% Similarity=0.144 Sum_probs=81.4
Q ss_pred CCCceEEeeccCCCCCCHHHHHHHHHHcCcccee-cC--CcccccchhhhhhhhhcCCchHHHHHHHHHHHHc-CCccc-
Q 004491 558 KEVPVLAGVCGTDPFRRVDYFLKQLESIGFFGVQ-NF--PTVGLFDGNFRQNLEETGMGYGLEVEMIDKAHKM-GLLTT- 632 (749)
Q Consensus 558 ~~tPViaGv~atDP~~~~~~~l~~lk~~Gf~GV~-Nf--PTvgliDG~fR~~LEe~G~gy~~EVemi~~A~~~-gl~T~- 632 (749)
.+.|+..=+++.|| -.+-+-.+.+++.||.+|. |+ |.--.........|-.. .++=.|+++..++. ++--.
T Consensus 63 ~~~~~~vQl~g~~~-~~~~~aa~~~~~~g~d~IdlN~gCP~~~v~~~g~Gs~ll~~---p~~~~eiv~av~~a~d~pv~v 138 (321)
T PRK10415 63 EPGIRTVQIAGSDP-KEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSALLQY---PDLVKSILTEVVNAVDVPVTL 138 (321)
T ss_pred cCCCEEEEEeCCCH-HHHHHHHHHHHHCCCCEEEEeCCCCHHHHcCCCcccHHhcC---HHHHHHHHHHHHHhcCCceEE
Confidence 34688888999999 3344446667789999985 76 63211111111112110 12222334433321 22111
Q ss_pred ----ccccC---H-HHHHHHHhccCcEEEeccCCCcccccccccccCHHHHHHHHHHHHHHHHHhCCCeEEEEccCCCCC
Q 004491 633 ----PYAFN---E-GEAVKMAKAGADIIVAHMGLTTSGSIGAKTALSLDESVDRVQAIADAAHRINPDAIVLCHGGPISS 704 (749)
Q Consensus 633 ----~yvf~---~-eqa~~Ma~AGaDiiv~h~GlT~gG~~Ga~~~~sl~~~~~~~~~i~~aa~~~~pdii~l~hGGPi~~ 704 (749)
+|--+ . +=|+.+.++|+|.|.+|-....+...|.- .. +.+.++.+ ++ ++ -++.-|-|.+
T Consensus 139 KiR~G~~~~~~~~~~~a~~le~~G~d~i~vh~rt~~~~~~G~a---~~----~~i~~ik~---~~--~i-PVI~nGgI~s 205 (321)
T PRK10415 139 KIRTGWAPEHRNCVEIAQLAEDCGIQALTIHGRTRACLFNGEA---EY----DSIRAVKQ---KV--SI-PVIANGDITD 205 (321)
T ss_pred EEEccccCCcchHHHHHHHHHHhCCCEEEEecCccccccCCCc---Ch----HHHHHHHH---hc--CC-cEEEeCCCCC
Confidence 11112 2 33455678999999999543233333311 12 23333322 22 23 3455667999
Q ss_pred HHHHHHHHhhCCCccEEecCccc
Q 004491 705 PSEAEFILKRTKGVHGFYGASSM 727 (749)
Q Consensus 705 p~d~~~~l~~~~~~~Gf~g~Ss~ 727 (749)
++|++.+++. ++++|..-|..+
T Consensus 206 ~~da~~~l~~-~gadgVmiGR~~ 227 (321)
T PRK10415 206 PLKARAVLDY-TGADALMIGRAA 227 (321)
T ss_pred HHHHHHHHhc-cCCCEEEEChHh
Confidence 9999999976 778998776544
No 134
>TIGR00693 thiE thiamine-phosphate pyrophosphorylase. This model includes ThiE from Bacillus subtilis but excludes its paralog, the regulatory protein TenI, and neighbors of TenI.
Probab=92.71 E-value=1.4 Score=43.89 Aligned_cols=161 Identities=20% Similarity=0.263 Sum_probs=91.9
Q ss_pred hhhcCCcEEEEeccccccccCCccccccccccCchHHHHHhhhhhcCCCC--CCceEEeeccCCCCCCHHHHHHHHHHcC
Q 004491 509 EEAGGVDLIVLYNSGRFRMAGRGSLAGLLPFADANAVVLEMANEVLPVVK--EVPVLAGVCGTDPFRRVDYFLKQLESIG 586 (749)
Q Consensus 509 ae~gGaDli~~ynsGrfR~~G~~SlagllpygdaN~iv~e~~~eilp~v~--~tPViaGv~atDP~~~~~~~l~~lk~~G 586 (749)
+-++|+|+|. +|+-+ .|.+ -..++++++.+.++ +.|++. .| +.+-..+.|
T Consensus 22 ~~~~g~~~v~------lR~~~----------~~~~-~~~~~~~~l~~~~~~~~~~l~i----~~-------~~~la~~~g 73 (196)
T TIGR00693 22 ALKGGVTLVQ------LRDKG----------SNTR-ERLALAEKLQELCRRYGVPFIV----ND-------RVDLALALG 73 (196)
T ss_pred HHhcCCCEEE------EecCC----------CCHH-HHHHHHHHHHHHHHHhCCeEEE----EC-------HHHHHHHcC
Confidence 4456799874 45421 1222 23456666666654 466665 22 456777889
Q ss_pred ccceecCCcccccchhhhhhhhhcCCchHHHHHHHHHHHHcCCcccccccCHHHHHHHHhccCcEEEe-ccCCCcccccc
Q 004491 587 FFGVQNFPTVGLFDGNFRQNLEETGMGYGLEVEMIDKAHKMGLLTTPYAFNEGEAVKMAKAGADIIVA-HMGLTTSGSIG 665 (749)
Q Consensus 587 f~GV~NfPTvgliDG~fR~~LEe~G~gy~~EVemi~~A~~~gl~T~~yvf~~eqa~~Ma~AGaDiiv~-h~GlT~gG~~G 665 (749)
..||. +| ++. + ..+..|.....+..--.-|.|.+|+.+..+.|+|.++. |+ ++++-.-+
T Consensus 74 ~~GvH-l~-----~~~----~---------~~~~~r~~~~~~~~ig~s~h~~~e~~~a~~~g~dyi~~~~v-~~t~~k~~ 133 (196)
T TIGR00693 74 ADGVH-LG-----QDD----L---------PASEARALLGPDKIIGVSTHNLEELAEAEAEGADYIGFGPI-FPTPTKKD 133 (196)
T ss_pred CCEEe-cC-----ccc----C---------CHHHHHHhcCCCCEEEEeCCCHHHHHHHhHcCCCEEEECCc-cCCCCCCC
Confidence 88883 22 000 0 12333433334455556688999998878999999875 33 22222222
Q ss_pred cccccCHHHHHHHHHHHHHHHHHhCCCeEEEEccCCCCCHHHHHHHHhhCCCccEEecCccccc
Q 004491 666 AKTALSLDESVDRVQAIADAAHRINPDAIVLCHGGPISSPSEAEFILKRTKGVHGFYGASSMER 729 (749)
Q Consensus 666 a~~~~sl~~~~~~~~~i~~aa~~~~pdii~l~hGGPi~~p~d~~~~l~~~~~~~Gf~g~Ss~ER 729 (749)
......+ +..+++.+. .+++-|++-||- ++++++.++ . .+++|+..+|.+=+
T Consensus 134 ~~~~~g~----~~l~~~~~~----~~~~pv~a~GGI--~~~~~~~~~-~-~G~~gva~~~~i~~ 185 (196)
T TIGR00693 134 PAPPAGV----ELLREIAAT----SIDIPIVAIGGI--TLENAAEVL-A-AGADGVAVVSAIMQ 185 (196)
T ss_pred CCCCCCH----HHHHHHHHh----cCCCCEEEECCc--CHHHHHHHH-H-cCCCEEEEhHHhhC
Confidence 2122233 233444322 234556666774 699999998 4 47899999888743
No 135
>cd04739 DHOD_like Dihydroorotate dehydrogenase (DHOD) like proteins. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. This subgroup has the conserved FMN binding site, but lacks some catalytic residues and may therefore be inactive.
Probab=92.70 E-value=1.9 Score=47.19 Aligned_cols=170 Identities=20% Similarity=0.223 Sum_probs=99.1
Q ss_pred HHHHHHHHHHhhc-CCCeEEeccccc-----hhhhhhhhcCCcEEEEeccccccccCCccccccccccCch-HHHHHhhh
Q 004491 479 QAILSKLKYQIDK-GLPIIGAGAGTG-----ISAKFEEAGGVDLIVLYNSGRFRMAGRGSLAGLLPFADAN-AVVLEMAN 551 (749)
Q Consensus 479 ~~il~~L~~~i~~-~~piig~gaGtG-----lsAk~ae~gGaDli~~ynsGrfR~~G~~SlagllpygdaN-~iv~e~~~ 551 (749)
+..++.+++..++ +.|++.--.|.- -.|+.+++.|+|.|-+ |-+-. .... ++ ++..- +.+.|+.+
T Consensus 85 ~~~~~~i~~~~~~~~~pvi~si~g~~~~~~~~~a~~~~~~gad~iEl-N~s~~--~~~~---~~--~g~~~~~~~~eiv~ 156 (325)
T cd04739 85 EEYLELIRRAKRAVSIPVIASLNGVSAGGWVDYARQIEEAGADALEL-NIYAL--PTDP---DI--SGAEVEQRYLDILR 156 (325)
T ss_pred HHHHHHHHHHHhccCCeEEEEeCCCCHHHHHHHHHHHHhcCCCEEEE-eCCCC--CCCC---Cc--ccchHHHHHHHHHH
Confidence 4455555543333 678776554543 3567778889998865 33210 0001 11 11111 34556666
Q ss_pred hhcCCCCCCceEEeeccCCCCCCHHHHHHHHHHcCccceecCCcccccchhh--hhhhhhcCCc----hHHHHHHHHHHH
Q 004491 552 EVLPVVKEVPVLAGVCGTDPFRRVDYFLKQLESIGFFGVQNFPTVGLFDGNF--RQNLEETGMG----YGLEVEMIDKAH 625 (749)
Q Consensus 552 eilp~v~~tPViaGv~atDP~~~~~~~l~~lk~~Gf~GV~NfPTvgliDG~f--R~~LEe~G~g----y~~EVemi~~A~ 625 (749)
.|-..+ ++||+.=+... +.++..+.+.+++.|-.||.=+-|..-.+-.. ++.+...|++ +..=++++++.+
T Consensus 157 ~v~~~~-~iPv~vKl~p~--~~~~~~~a~~l~~~Gadgi~~~nt~~~~~id~~~~~~~~~~glSG~~~~~~al~~v~~v~ 233 (325)
T cd04739 157 AVKSAV-TIPVAVKLSPF--FSALAHMAKQLDAAGADGLVLFNRFYQPDIDLETLEVVPNLLLSSPAEIRLPLRWIAILS 233 (325)
T ss_pred HHHhcc-CCCEEEEcCCC--ccCHHHHHHHHHHcCCCeEEEEcCcCCCCccccccceecCCCcCCccchhHHHHHHHHHH
Confidence 665555 48999887642 34789999999999999997666642111111 1111111111 112234555554
Q ss_pred ---HcCCcccccccCHHHHHHHHhccCcEEEeccCCC
Q 004491 626 ---KMGLLTTPYAFNEGEAVKMAKAGADIIVAHMGLT 659 (749)
Q Consensus 626 ---~~gl~T~~yvf~~eqa~~Ma~AGaDiiv~h~GlT 659 (749)
+..+..+.=++|.++|.+|..+|||.+=+--++-
T Consensus 234 ~~~~ipIig~GGI~s~~Da~e~l~aGA~~Vqv~ta~~ 270 (325)
T cd04739 234 GRVKASLAASGGVHDAEDVVKYLLAGADVVMTTSALL 270 (325)
T ss_pred cccCCCEEEECCCCCHHHHHHHHHcCCCeeEEehhhh
Confidence 3557777889999999999999999876654433
No 136
>cd00946 FBP_aldolase_IIA Class II Type A, Fructose-1,6-bisphosphate (FBP) aldolases. The enzyme catalyses the zinc-dependent, reversible aldol condensation of dihydroxyacetone phosphate with glyceraldehyde-3-phosphate to form fructose-1,6-bisphosphate. FBP aldolase is homodimeric and used in gluconeogenesis and glycolysis. The type A and type B Class II FBPA's differ in the presence and absence of distinct indels in the sequence that result in differing loop lengths in the structures.
Probab=92.67 E-value=1.2 Score=49.55 Aligned_cols=181 Identities=17% Similarity=0.164 Sum_probs=104.7
Q ss_pred hhhhhcCCcEEEEeccccccccCCc---------cccccccccCchHHHHHhhhhhcCCCCCCceEEee-ccCCCCCCH-
Q 004491 507 KFEEAGGVDLIVLYNSGRFRMAGRG---------SLAGLLPFADANAVVLEMANEVLPVVKEVPVLAGV-CGTDPFRRV- 575 (749)
Q Consensus 507 k~ae~gGaDli~~ynsGrfR~~G~~---------SlagllpygdaN~iv~e~~~eilp~v~~tPViaGv-~atDP~~~~- 575 (749)
+.||+.+.++||-.+-|-.+..+.. |..|.. ..=.++..++++. .+||.-=+ .++|+..++
T Consensus 34 ~AAee~~sPvIiq~s~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~v~~~A~~~-----~VPValHLDHg~~~~~~~~ 105 (345)
T cd00946 34 EAARDAKSPIIIQFSNGGAAFYAGKGLKNEKQKASIAGAI---AAAHHVRSMAEHY-----GVPVVLHTDHCAKKLLPWF 105 (345)
T ss_pred HHHHHhCCCEEEECCccHHhhcCCccccccchhhhhhhHH---HHHHHHHHHHHHC-----CCCEEEECCCCCCccchhh
Confidence 6789999999998877654431110 111111 1123444555443 46765432 344554422
Q ss_pred -------HHHHHHHHHcCccceecCCcccccchh---hhhhhhhcCCchHHHHHHHHHHHHcCCc---------------
Q 004491 576 -------DYFLKQLESIGFFGVQNFPTVGLFDGN---FRQNLEETGMGYGLEVEMIDKAHKMGLL--------------- 630 (749)
Q Consensus 576 -------~~~l~~lk~~Gf~GV~NfPTvgliDG~---fR~~LEe~G~gy~~EVemi~~A~~~gl~--------------- 630 (749)
..++++..+.||+.| +|||+ |-+|++.| +| ..+.||.+|+.
T Consensus 106 ~~~~~a~~~~~~~a~~~GftSV-------MiDgS~lp~eENI~~T-----ke--vVe~Ah~~gvsVEaElG~igg~ed~~ 171 (345)
T cd00946 106 DGLLEADEEYFKQHGEPLFSSH-------MLDLSEEPLEENIEIC-----KK--YLERMAKINMWLEMEIGITGGEEDGV 171 (345)
T ss_pred HHHHHHHHHHHHHhccCCCceE-------EeeCCCCCHHHHHHHH-----HH--HHHHHHHcCCEEEEEecccCCcccCc
Confidence 222223335566554 89985 66666542 32 34555655542
Q ss_pred -cc-----ccccCHHHHHHHHhc-----cCcEEEeccCCCcccccccccccCHHHHHHHHHHHHHHHHHhC-----CCeE
Q 004491 631 -TT-----PYAFNEGEAVKMAKA-----GADIIVAHMGLTTSGSIGAKTALSLDESVDRVQAIADAAHRIN-----PDAI 694 (749)
Q Consensus 631 -T~-----~yvf~~eqa~~Ma~A-----GaDiiv~h~GlT~gG~~Ga~~~~sl~~~~~~~~~i~~aa~~~~-----pdii 694 (749)
.. .+-.++|||+.+++. |+|.|-+=+|-..|-..+.+..+.++ ++++|.++.++.- -++-
T Consensus 172 ~~~~~~~~~~yTdPeeA~~Fv~~t~~~tgvD~LAvaiGt~HG~Y~~~~p~L~~~----~L~~I~~~i~~~~~~~~~~~ip 247 (345)
T cd00946 172 DNSGVDNAELYTQPEDVWYVYEALSKISPNFSIAAAFGNVHGVYKPGNVKLQPE----ILGEHQDYVREKLGLADDKPLY 247 (345)
T ss_pred ccccccccccCCCHHHHHHHHHHhccCCCceeeeeeccccccCCCCCCCccCHH----HHHHHHHHHHHhhccccCCCCC
Confidence 11 334689999999986 99999999987776665323334443 6666766533322 2565
Q ss_pred EEEccCCCCCHHHHHHHHh
Q 004491 695 VLCHGGPISSPSEAEFILK 713 (749)
Q Consensus 695 ~l~hGGPi~~p~d~~~~l~ 713 (749)
+..|||-=...+|++...+
T Consensus 248 LVLHGgSG~~~e~i~kai~ 266 (345)
T cd00946 248 FVFHGGSGSTKEEIREAIS 266 (345)
T ss_pred EEEeCCCCCCHHHHHHHHH
Confidence 6789997777888886654
No 137
>PRK07315 fructose-bisphosphate aldolase; Provisional
Probab=92.66 E-value=2 Score=46.79 Aligned_cols=200 Identities=19% Similarity=0.270 Sum_probs=119.5
Q ss_pred hhhhhcCCcEEEEeccccccccCCccccccccccCchHHHHHhhhhhcCCCCCCceEEeeccCCCCCCHHHHHHHHHHcC
Q 004491 507 KFEEAGGVDLIVLYNSGRFRMAGRGSLAGLLPFADANAVVLEMANEVLPVVKEVPVLAGVCGTDPFRRVDYFLKQLESIG 586 (749)
Q Consensus 507 k~ae~gGaDli~~ynsGrfR~~G~~SlagllpygdaN~iv~e~~~eilp~v~~tPViaGv~atDP~~~~~~~l~~lk~~G 586 (749)
+.||+-+.++||-.+.|..+-.|. +...=.++..++++. . + .+||.-= .|=- +.+ .+++.-+.|
T Consensus 36 ~aAe~~~sPvIlq~s~~~~~~~~~--------~~~~~~~~~~~a~~~-~-~-~vPV~lH---LDH~-~~~-~i~~ai~~G 99 (293)
T PRK07315 36 RAAEAKKAPVLIQTSMGAAKYMGG--------YKVCKNLIENLVESM-G-I-TVPVAIH---LDHG-HYE-DALECIEVG 99 (293)
T ss_pred HHHHHHCCCEEEEcCccHHhhcCc--------HHHHHHHHHHHHHHc-C-C-CCcEEEE---CCCC-CHH-HHHHHHHcC
Confidence 678999999999887776654331 222233445555442 0 0 3576533 3322 344 677777889
Q ss_pred ccceecCCcccccch---hhhhhhhh----------cCCchHHHHHHHHHHHHcCCcccccccCHHHHHHHHhccCcEEE
Q 004491 587 FFGVQNFPTVGLFDG---NFRQNLEE----------TGMGYGLEVEMIDKAHKMGLLTTPYAFNEGEAVKMAKAGADIIV 653 (749)
Q Consensus 587 f~GV~NfPTvgliDG---~fR~~LEe----------~G~gy~~EVemi~~A~~~gl~T~~yvf~~eqa~~Ma~AGaDiiv 653 (749)
|+-|| +|| .|++|++. .|..++.|+.-|- ..+-++....--.|+|||++..+-|+|.|-
T Consensus 100 ftSVm-------~d~S~l~~eEni~~t~~v~~~a~~~gv~vE~ElG~i~-g~ed~~~g~s~~t~peea~~f~~tgvD~LA 171 (293)
T PRK07315 100 YTSIM-------FDGSHLPVEENLKLAKEVVEKAHAKGISVEAEVGTIG-GEEDGIIGKGELAPIEDAKAMVETGIDFLA 171 (293)
T ss_pred CCEEE-------EcCCCCCHHHHHHHHHHHHHHHHHcCCEEEEecCccc-CcCccccCccCCCCHHHHHHHHHcCCCEEe
Confidence 98886 443 25666643 3555555554331 111111111112699999999999999998
Q ss_pred eccCCCcccccccccccCHHHHHHHHHHHHHHHHHhCCCeEEEEccCCCCCHHHHHHHHhhCCCccEEecCcccccchHH
Q 004491 654 AHMGLTTSGSIGAKTALSLDESVDRVQAIADAAHRINPDAIVLCHGGPISSPSEAEFILKRTKGVHGFYGASSMERLPVE 733 (749)
Q Consensus 654 ~h~GlT~gG~~Ga~~~~sl~~~~~~~~~i~~aa~~~~pdii~l~hGGPi~~p~d~~~~l~~~~~~~Gf~g~Ss~ERlP~E 733 (749)
+=+|-..|-..+..+.+.+ +++++|.++. +++-+.+|||-=-+.++++.+.+. ++.++=-.|.+=. ...
T Consensus 172 v~iG~vHG~y~t~~k~l~~----e~L~~i~~~~----~~iPlVlhGGSGi~~e~~~~~i~~--Gi~KiNv~T~i~~-~~~ 240 (293)
T PRK07315 172 AGIGNIHGPYPENWEGLDL----DHLEKLTEAV----PGFPIVLHGGSGIPDDQIQEAIKL--GVAKVNVNTECQI-AFA 240 (293)
T ss_pred eccccccccCCCCCCcCCH----HHHHHHHHhc----cCCCEEEECCCCCCHHHHHHHHHc--CCCEEEEccHHHH-HHH
Confidence 8877664444332223444 3566665554 346678899966678999999855 6778776666543 444
Q ss_pred HHHHHHHH
Q 004491 734 QAITSTMR 741 (749)
Q Consensus 734 ~ai~~~~~ 741 (749)
+++++..+
T Consensus 241 ~~~~~~~~ 248 (293)
T PRK07315 241 NATRKFAR 248 (293)
T ss_pred HHHHHHHH
Confidence 45555443
No 138
>PRK05437 isopentenyl pyrophosphate isomerase; Provisional
Probab=92.60 E-value=8.7 Score=42.75 Aligned_cols=207 Identities=18% Similarity=0.192 Sum_probs=107.8
Q ss_pred cCCCeEEeccccch---------hhhhhhhcCCcEEEEeccccccccCCccccccccccCchHHHHHhhhhhcCCCCCCc
Q 004491 491 KGLPIIGAGAGTGI---------SAKFEEAGGVDLIVLYNSGRFRMAGRGSLAGLLPFADANAVVLEMANEVLPVVKEVP 561 (749)
Q Consensus 491 ~~~piig~gaGtGl---------sAk~ae~gGaDli~~ynsGrfR~~G~~SlagllpygdaN~iv~e~~~eilp~v~~tP 561 (749)
=..||+-++..-|. .|+.+++.|..+ |.||+...+ -+.. ...++ +.+--..++.|
T Consensus 59 l~~Pi~i~~MtGgs~~~~~in~~La~~a~~~G~~~------------~~Gs~~~~~--~~~~-~~~~~-~~vr~~~p~~p 122 (352)
T PRK05437 59 LSAPFLINAMTGGSEKAKEINRKLAEAAEELGIAM------------GVGSQRAAL--KDPE-LADSF-SVVRKVAPDGL 122 (352)
T ss_pred ecCCEEecccCCCChhHHHHHHHHHHHHHHcCCCe------------EecccHhhc--cChh-hHHHH-HHHHHHCCCce
Confidence 46788866544332 255677777654 335554322 2222 22222 22333334789
Q ss_pred eEEeeccCCC-CCCHHHHHHHHHHcCcccee-cCCcccccchhhhhhhhhcCC-chHHHHHHHHHHHHc-CCcc----cc
Q 004491 562 VLAGVCGTDP-FRRVDYFLKQLESIGFFGVQ-NFPTVGLFDGNFRQNLEETGM-GYGLEVEMIDKAHKM-GLLT----TP 633 (749)
Q Consensus 562 ViaGv~atDP-~~~~~~~l~~lk~~Gf~GV~-NfPTvgliDG~fR~~LEe~G~-gy~~EVemi~~A~~~-gl~T----~~ 633 (749)
|++=+++..+ -.+.+.+.+.++.++=..++ |++. -.+.....|- -|+.=+|.|+..++. ++.- .+
T Consensus 123 ~~aNl~~~~~~~~~~~~~~~~~~~~~adal~l~l~~-------~qe~~~p~g~~~f~~~le~i~~i~~~~~vPVivK~~g 195 (352)
T PRK05437 123 LFANLGAVQLYGYGVEEAQRAVEMIEADALQIHLNP-------LQELVQPEGDRDFRGWLDNIAEIVSALPVPVIVKEVG 195 (352)
T ss_pred EEeecCccccCCCCHHHHHHHHHhcCCCcEEEeCcc-------chhhcCCCCcccHHHHHHHHHHHHHhhCCCEEEEeCC
Confidence 9998888654 44566777766666644442 2210 0000010111 233223444444443 3221 24
Q ss_pred cccCHHHHHHHHhccCcEEEeccCCCcccccccc----cc------c-CHHHHHHHHHHHHHHHHHhCCCeEEEEccCCC
Q 004491 634 YAFNEGEAVKMAKAGADIIVAHMGLTTSGSIGAK----TA------L-SLDESVDRVQAIADAAHRINPDAIVLCHGGPI 702 (749)
Q Consensus 634 yvf~~eqa~~Ma~AGaDiiv~h~GlT~gG~~Ga~----~~------~-sl~~~~~~~~~i~~aa~~~~pdii~l~hGGPi 702 (749)
+..+.++|+.+.++|+|.|+++-. ||+-.+. .. . ..+-....++.|.+..+.. +++-+++-|| |
T Consensus 196 ~g~s~~~a~~l~~~Gvd~I~Vsg~---GGt~~~~ie~~R~~~~~~~~~~~~~g~pt~~~l~~i~~~~-~~ipvia~GG-I 270 (352)
T PRK05437 196 FGISKETAKRLADAGVKAIDVAGA---GGTSWAAIENYRARDDRLASYFADWGIPTAQSLLEARSLL-PDLPIIASGG-I 270 (352)
T ss_pred CCCcHHHHHHHHHcCCCEEEECCC---CCCCccchhhhhhhccccccccccccCCHHHHHHHHHHhc-CCCeEEEECC-C
Confidence 568899999999999999999643 4432110 00 0 0011122233333333332 4555666655 9
Q ss_pred CCHHHHHHHHhhCCCccEEecCccc
Q 004491 703 SSPSEAEFILKRTKGVHGFYGASSM 727 (749)
Q Consensus 703 ~~p~d~~~~l~~~~~~~Gf~g~Ss~ 727 (749)
.++.|+...+.. +++..--++.+
T Consensus 271 ~~~~dv~k~l~~--GAd~v~ig~~~ 293 (352)
T PRK05437 271 RNGLDIAKALAL--GADAVGMAGPF 293 (352)
T ss_pred CCHHHHHHHHHc--CCCEEEEhHHH
Confidence 999999999955 56776666643
No 139
>PRK08091 ribulose-phosphate 3-epimerase; Validated
Probab=92.59 E-value=1.4 Score=46.46 Aligned_cols=170 Identities=18% Similarity=0.282 Sum_probs=115.5
Q ss_pred hcCCCCCCceEEeeccCCCCCCHHHHHHHHHHcCccceecCCcccccchhhhhhhhhcCCchHHHHHHHHHHHHcCCccc
Q 004491 553 VLPVVKEVPVLAGVCGTDPFRRVDYFLKQLESIGFFGVQNFPTVGLFDGNFRQNLEETGMGYGLEVEMIDKAHKMGLLTT 632 (749)
Q Consensus 553 ilp~v~~tPViaGv~atDP~~~~~~~l~~lk~~Gf~GV~NfPTvgliDG~fR~~LEe~G~gy~~EVemi~~A~~~gl~T~ 632 (749)
.+..+|.+++-..+.+.|+ .++.+-+++|++.|. .|=-+=.+||+|=.|+ .+|- ..|+.|+ + ++
T Consensus 6 ~~~~~~~~~I~pSil~ad~-~~l~~el~~l~~~g~----d~lHiDVMDG~FVPNi---tfGp-~~i~~i~---~----~~ 69 (228)
T PRK08091 6 LIQQLKQQPISVGILASNW-LKFNETLTTLSENQL----RLLHFDIADGQFSPFF---TVGA-IAIKQFP---T----HC 69 (228)
T ss_pred HHHHhcCCeEEeehhhcCH-HHHHHHHHHHHHCCC----CEEEEeccCCCcCCcc---ccCH-HHHHHhC---C----CC
Confidence 4556788999999999998 567888899998874 4445677889998886 2222 2455554 2 23
Q ss_pred c-----cccCHHH-HHHHHhccCcEEEeccCCCcc-----------cc---cc----ccccc------------------
Q 004491 633 P-----YAFNEGE-AVKMAKAGADIIVAHMGLTTS-----------GS---IG----AKTAL------------------ 670 (749)
Q Consensus 633 ~-----yvf~~eq-a~~Ma~AGaDiiv~h~GlT~g-----------G~---~G----a~~~~------------------ 670 (749)
| .|-|+++ .+++++||||+|+.|.--+.. |. .| -.|.+
T Consensus 70 ~~DvHLMv~~P~~~i~~~~~aGad~It~H~Ea~~~~~~~l~~Ik~~g~~~kaGlalnP~Tp~~~i~~~l~~vD~VLiMtV 149 (228)
T PRK08091 70 FKDVHLMVRDQFEVAKACVAAGADIVTLQVEQTHDLALTIEWLAKQKTTVLIGLCLCPETPISLLEPYLDQIDLIQILTL 149 (228)
T ss_pred CEEEEeccCCHHHHHHHHHHhCCCEEEEcccCcccHHHHHHHHHHCCCCceEEEEECCCCCHHHHHHHHhhcCEEEEEEE
Confidence 3 2456644 678899999999999984322 22 11 11111
Q ss_pred --------CHHHHHHHHHHHHHHHHHhCCCeEEEEccCCCCCHHHHHHHHhhCCCccEEecCcccccchHHHHHHHHHHh
Q 004491 671 --------SLDESVDRVQAIADAAHRINPDAIVLCHGGPISSPSEAEFILKRTKGVHGFYGASSMERLPVEQAITSTMRQ 742 (749)
Q Consensus 671 --------sl~~~~~~~~~i~~aa~~~~pdii~l~hGGPi~~p~d~~~~l~~~~~~~Gf~g~Ss~ERlP~E~ai~~~~~~ 742 (749)
=++++.++++++.+--.+.+.++.+.+-|| -+++-+..+.+ .+++.|+.||++=+-+ ...+.+++
T Consensus 150 ~PGfgGQ~f~~~~l~KI~~lr~~~~~~~~~~~IeVDGG--I~~~ti~~l~~--aGaD~~V~GSalF~~~---d~~~~i~~ 222 (228)
T PRK08091 150 DPRTGTKAPSDLILDRVIQVENRLGNRRVEKLISIDGS--MTLELASYLKQ--HQIDWVVSGSALFSQG---ELKTTLKE 222 (228)
T ss_pred CCCCCCccccHHHHHHHHHHHHHHHhcCCCceEEEECC--CCHHHHHHHHH--CCCCEEEEChhhhCCC---CHHHHHHH
Confidence 123555666666666666677899999999 67888888874 5789999999983322 25566666
Q ss_pred hcc
Q 004491 743 YKS 745 (749)
Q Consensus 743 FK~ 745 (749)
+|+
T Consensus 223 l~~ 225 (228)
T PRK08091 223 WKS 225 (228)
T ss_pred HHH
Confidence 665
No 140
>PRK08649 inosine 5-monophosphate dehydrogenase; Validated
Probab=92.54 E-value=0.47 Score=53.08 Aligned_cols=101 Identities=18% Similarity=0.230 Sum_probs=60.9
Q ss_pred HHHHHHHcCCcccc-cccCHHHHHHHHhccCcEEEeccCCCcccccccccccCHHHHHHHHHHHHHHH---HHh-----C
Q 004491 620 MIDKAHKMGLLTTP-YAFNEGEAVKMAKAGADIIVAHMGLTTSGSIGAKTALSLDESVDRVQAIADAA---HRI-----N 690 (749)
Q Consensus 620 mi~~A~~~gl~T~~-yvf~~eqa~~Ma~AGaDiiv~h~GlT~gG~~Ga~~~~sl~~~~~~~~~i~~aa---~~~-----~ 690 (749)
+++..++.++.-++ -|++.++|+++.++|||.|.+-.| +|++ ..+...+.--+-.+..|.+++ ++. .
T Consensus 179 i~~~ik~~~ipVIaG~V~t~e~A~~l~~aGAD~V~VG~G---~Gs~-~~t~~~~g~g~p~~~ai~~~~~a~~~~l~~~~~ 254 (368)
T PRK08649 179 LKEFIYELDVPVIVGGCVTYTTALHLMRTGAAGVLVGIG---PGAA-CTSRGVLGIGVPMATAIADVAAARRDYLDETGG 254 (368)
T ss_pred HHHHHHHCCCCEEEeCCCCHHHHHHHHHcCCCEEEECCC---CCcC-CCCcccCCCCcCHHHHHHHHHHHHHHhhhhhcC
Confidence 56666677877776 899999999999999999987554 2321 111111100111222333332 221 1
Q ss_pred CCeEEEEccCCCCCHHHHHHHHhhCCCccEEecCccc
Q 004491 691 PDAIVLCHGGPISSPSEAEFILKRTKGVHGFYGASSM 727 (749)
Q Consensus 691 pdii~l~hGGPi~~p~d~~~~l~~~~~~~Gf~g~Ss~ 727 (749)
+++-|++-|| |.++.|+...|.- ++++-.=||.|
T Consensus 255 ~~vpVIAdGG-I~~~~diakAlal--GAd~Vm~Gs~f 288 (368)
T PRK08649 255 RYVHVIADGG-IGTSGDIAKAIAC--GADAVMLGSPL 288 (368)
T ss_pred CCCeEEEeCC-CCCHHHHHHHHHc--CCCeecccchh
Confidence 2566777766 9999999998843 55665555543
No 141
>TIGR00736 nifR3_rel_arch TIM-barrel protein, putative. Members of this family show a distant relationship by PSI-BLAST to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase. At least two closely related but well-separable families among the bacteria, the nifR3/yhdG family and the yjbN family, share a more distant relationship to this family of shorter, exclusively archaeal proteins.
Probab=92.51 E-value=3.5 Score=43.55 Aligned_cols=152 Identities=15% Similarity=0.102 Sum_probs=94.6
Q ss_pred HHHHHHHHHhhcCCCeEEeccc-c----chhhhhhhhcCCcEEEEecccc----ccccCCccccccccccCchHHHHHhh
Q 004491 480 AILSKLKYQIDKGLPIIGAGAG-T----GISAKFEEAGGVDLIVLYNSGR----FRMAGRGSLAGLLPFADANAVVLEMA 550 (749)
Q Consensus 480 ~il~~L~~~i~~~~piig~gaG-t----GlsAk~ae~gGaDli~~ynsGr----fR~~G~~SlagllpygdaN~iv~e~~ 550 (749)
+.+++--.+++++.|++---.| + -..|+..+. ++|.|= +|.|= -.-.|.|+.-.. --+.+.++.
T Consensus 55 ~~i~~e~~~~~~~~~vivnv~~~~~ee~~~~a~~v~~-~~d~Id-iN~gCP~~~v~~~g~G~~Ll~-----dp~~l~~iv 127 (231)
T TIGR00736 55 SYIIEQIKKAESRALVSVNVRFVDLEEAYDVLLTIAE-HADIIE-INAHCRQPEITEIGIGQELLK-----NKELLKEFL 127 (231)
T ss_pred HHHHHHHHHHhhcCCEEEEEecCCHHHHHHHHHHHhc-CCCEEE-EECCCCcHHHcCCCCchhhcC-----CHHHHHHHH
Confidence 3333334444555565553323 2 223444444 788654 56553 333344443322 335666666
Q ss_pred hhhcCCCCCCceEEeeccCCCCCCHHHHHHHHHHcCccceecCCcccccchhhhhhhhhcCCchHHHHHHHHHHHHc-C-
Q 004491 551 NEVLPVVKEVPVLAGVCGTDPFRRVDYFLKQLESIGFFGVQNFPTVGLFDGNFRQNLEETGMGYGLEVEMIDKAHKM-G- 628 (749)
Q Consensus 551 ~eilp~v~~tPViaGv~atDP~~~~~~~l~~lk~~Gf~GV~NfPTvgliDG~fR~~LEe~G~gy~~EVemi~~A~~~-g- 628 (749)
+.+- .. ++||..=+-...+..+...+.+.+.+.|.++| || |+.+. |-+| -..++|++.++. +
T Consensus 128 ~av~-~~-~~PVsvKiR~~~~~~~~~~~a~~l~~aGad~i----~V---d~~~~------g~~~-a~~~~I~~i~~~~~~ 191 (231)
T TIGR00736 128 TKMK-EL-NKPIFVKIRGNCIPLDELIDALNLVDDGFDGI----HV---DAMYP------GKPY-ADMDLLKILSEEFND 191 (231)
T ss_pred HHHH-cC-CCcEEEEeCCCCCcchHHHHHHHHHHcCCCEE----EE---eeCCC------CCch-hhHHHHHHHHHhcCC
Confidence 6655 22 68999988887666778899999999999999 33 53221 3233 457888888875 3
Q ss_pred --CcccccccCHHHHHHHHhccCcEEEe
Q 004491 629 --LLTTPYAFNEGEAVKMAKAGADIIVA 654 (749)
Q Consensus 629 --l~T~~yvf~~eqa~~Ma~AGaDiiv~ 654 (749)
+.-..=+++.++|++|.++|||-+-+
T Consensus 192 ipIIgNGgI~s~eda~e~l~~GAd~Vmv 219 (231)
T TIGR00736 192 KIIIGNNSIDDIESAKEMLKAGADFVSV 219 (231)
T ss_pred CcEEEECCcCCHHHHHHHHHhCCCeEEE
Confidence 44455689999999999999997643
No 142
>PF01116 F_bP_aldolase: Fructose-bisphosphate aldolase class-II; InterPro: IPR000771 Fructose-bisphosphate aldolase [, ] is a glycolytic enzyme that catalyses the reversible aldol cleavage or condensation of fructose-1,6-bisphosphate into dihydroxyacetone-phosphate and glyceraldehyde 3-phosphate. There are two classes of fructose-bisphosphate aldolases with different catalytic mechanisms. Class-II aldolases [], mainly found in prokaryotes and fungi, are homodimeric enzymes, which require a divalent metal ion, generally zinc, for their activity. This family also includes the Escherichia coli galactitol operon protein, gatY, which catalyses the transformation of tagatose 1,6-bisphosphate into glycerone phosphate and D-glyceraldehyde 3-phosphate; and E. coli N-acetyl galactosamine operon protein, agaY, which catalyses the same reaction. There are two histidine residues in the first half of the sequence of these enzymes that have been shown to be involved in binding a zinc ion [].; GO: 0008270 zinc ion binding, 0016832 aldehyde-lyase activity, 0005975 carbohydrate metabolic process; PDB: 3Q94_A 1RVG_B 1RV8_C 3C4U_A 3C56_B 3C52_A 2FJK_A 3N9R_P 3N9S_A 1GVF_B ....
Probab=92.50 E-value=3 Score=45.26 Aligned_cols=170 Identities=24% Similarity=0.317 Sum_probs=110.6
Q ss_pred hhhhhhcCCcEEEEeccccccccCCccccccccccCchHHHHHhhhhhcCCCCCCceEEeeccCCCCCCHHHHHHHHHHc
Q 004491 506 AKFEEAGGVDLIVLYNSGRFRMAGRGSLAGLLPFADANAVVLEMANEVLPVVKEVPVLAGVCGTDPFRRVDYFLKQLESI 585 (749)
Q Consensus 506 Ak~ae~gGaDli~~ynsGrfR~~G~~SlagllpygdaN~iv~e~~~eilp~v~~tPViaGv~atDP~~~~~~~l~~lk~~ 585 (749)
-++||+-+..+||-.+.+-.+.. ++...=.++..++++. ++||.-=+ |=..+ -.++++..+.
T Consensus 34 i~AAe~~~sPvIlq~~~~~~~~~---------~~~~~~~~~~~~a~~~-----~vPValHL---DH~~~-~e~i~~ai~~ 95 (287)
T PF01116_consen 34 IEAAEELNSPVILQISPSEVKYM---------GLEYLAAMVKAAAEEA-----SVPVALHL---DHGKD-FEDIKRAIDA 95 (287)
T ss_dssp HHHHHHTTS-EEEEEEHHHHHHH---------HHHHHHHHHHHHHHHS-----TSEEEEEE---EEE-S-HHHHHHHHHH
T ss_pred HHHHHHhCCCEEEEcchhhhhhh---------hHHHHHHHHHHHHHHc-----CCCEEeec---ccCCC-HHHHHHHHHh
Confidence 36789999999998777666654 3333334566677663 48886543 22222 4566777777
Q ss_pred CccceecCCcccccchh---hhhhhhhcCCchHHHHHHHHHHHHcCCc----------------c----cccccCHHHHH
Q 004491 586 GFFGVQNFPTVGLFDGN---FRQNLEETGMGYGLEVEMIDKAHKMGLL----------------T----TPYAFNEGEAV 642 (749)
Q Consensus 586 Gf~GV~NfPTvgliDG~---fR~~LEe~G~gy~~EVemi~~A~~~gl~----------------T----~~yvf~~eqa~ 642 (749)
||+.| +|||+ |.+|++. =-++.+.||+.|+. + -.+-.+++||+
T Consensus 96 GftSV-------M~DgS~l~~eeNi~~-------T~~vv~~ah~~gv~VEaElG~i~g~ed~~~~~~~~~~~~TdP~~a~ 161 (287)
T PF01116_consen 96 GFTSV-------MIDGSALPFEENIAI-------TREVVEYAHAYGVSVEAELGHIGGKEDGIESEEETESLYTDPEEAK 161 (287)
T ss_dssp TSSEE-------EEE-TTS-HHHHHHH-------HHHHHHHHHHTT-EEEEEESBSSSSCTTCSSSTT-TTCSSSHHHHH
T ss_pred Ccccc-------cccCCcCCHHHHHHH-------HHHHHHhhhhhCCEEEEEeeeeeccCCCccccccccccccCHHHHH
Confidence 99988 99987 3333332 23456777876532 1 33556899999
Q ss_pred HHH-hccCcEEEeccCCCcccccccccccCHHHHHHHHHHHHHHHHHhCCCeEEEEccCCCCCHHHHHHHHhh
Q 004491 643 KMA-KAGADIIVAHMGLTTSGSIGAKTALSLDESVDRVQAIADAAHRINPDAIVLCHGGPISSPSEAEFILKR 714 (749)
Q Consensus 643 ~Ma-~AGaDiiv~h~GlT~gG~~Ga~~~~sl~~~~~~~~~i~~aa~~~~pdii~l~hGGPi~~p~d~~~~l~~ 714 (749)
++. +-|+|.|-+-+|-..|-..+.+ .+.|+ .+++++|.++.. ++-+..|||-=...++++...+.
T Consensus 162 ~Fv~~TgvD~LAvaiGt~HG~y~~~~-~p~Ld--~~~L~~I~~~~~----~iPLVlHGgSG~~~e~~~~ai~~ 227 (287)
T PF01116_consen 162 EFVEETGVDALAVAIGTAHGMYKGGK-KPKLD--FDRLKEIREAVP----DIPLVLHGGSGLPDEQIRKAIKN 227 (287)
T ss_dssp HHHHHHTTSEEEE-SSSBSSSBSSSS-STC----HHHHHHHHHHHH----TSEEEESSCTTS-HHHHHHHHHT
T ss_pred HHHHHhCCCEEEEecCccccccCCCC-CcccC--HHHHHHHHHhcC----CCCEEEECCCCCCHHHHHHHHHc
Confidence 996 8999999999998887766521 22232 466777776665 77788899987788888887744
No 143
>cd00564 TMP_TenI Thiamine monophosphate synthase (TMP synthase)/TenI. TMP synthase catalyzes an important step in the thiamine biosynthesis pathway, the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl) thiazole phosphate to yield thiamine phosphate. TenI is a enzymatically inactive regulatory protein involved in the regulation of several extracellular enzymes. This superfamily also contains other enzymatically inactive proteins with unknown functions.
Probab=92.49 E-value=1.2 Score=43.22 Aligned_cols=121 Identities=21% Similarity=0.224 Sum_probs=74.0
Q ss_pred HHHHHHHcCccceecCCcccccchhhhhhhhhcCCchHHHHHHHHHHHHcCCcccccccCHHHHHHHHhccCcEEEeccC
Q 004491 578 FLKQLESIGFFGVQNFPTVGLFDGNFRQNLEETGMGYGLEVEMIDKAHKMGLLTTPYAFNEGEAVKMAKAGADIIVAHMG 657 (749)
Q Consensus 578 ~l~~lk~~Gf~GV~NfPTvgliDG~fR~~LEe~G~gy~~EVemi~~A~~~gl~T~~yvf~~eqa~~Ma~AGaDiiv~h~G 657 (749)
+++...+.|..|| .+|.-.. ....++..++.++.--.-+.+.+|+++..++|+|.|+.+.-
T Consensus 64 ~~~~a~~~g~~~v-h~~~~~~------------------~~~~~~~~~~~~~~~g~~~~t~~~~~~~~~~g~d~i~~~~~ 124 (196)
T cd00564 64 RVDLALAVGADGV-HLGQDDL------------------PVAEARALLGPDLIIGVSTHSLEEALRAEELGADYVGFGPV 124 (196)
T ss_pred hHHHHHHcCCCEE-ecCcccC------------------CHHHHHHHcCCCCEEEeeCCCHHHHHHHhhcCCCEEEECCc
Confidence 4667788888877 3442111 12233444445555555567889999999999999988543
Q ss_pred CCcccccccccccCHHHHHHHHHHHHHHHHHhCCCeEEEEccCCCCCHHHHHHHHhhCCCccEEecCcccccc
Q 004491 658 LTTSGSIGAKTALSLDESVDRVQAIADAAHRINPDAIVLCHGGPISSPSEAEFILKRTKGVHGFYGASSMERL 730 (749)
Q Consensus 658 lT~gG~~Ga~~~~sl~~~~~~~~~i~~aa~~~~pdii~l~hGGPi~~p~d~~~~l~~~~~~~Gf~g~Ss~ERl 730 (749)
.-+..--+.....+ .++++++.+. .++-+++-||. ++++++.+++ .+++|+..+|++-+-
T Consensus 125 ~~~~~~~~~~~~~~----~~~~~~~~~~-----~~~pv~a~GGi--~~~~i~~~~~--~Ga~~i~~g~~i~~~ 184 (196)
T cd00564 125 FPTPTKPGAGPPLG----LELLREIAEL-----VEIPVVAIGGI--TPENAAEVLA--AGADGVAVISAITGA 184 (196)
T ss_pred cCCCCCCCCCCCCC----HHHHHHHHHh-----CCCCEEEECCC--CHHHHHHHHH--cCCCEEEEehHhhcC
Confidence 32222112112222 3334444332 34555556875 6899999985 478999999988654
No 144
>PRK09196 fructose-1,6-bisphosphate aldolase; Reviewed
Probab=92.48 E-value=2.7 Score=46.95 Aligned_cols=180 Identities=19% Similarity=0.305 Sum_probs=101.9
Q ss_pred cCCCeEEeccccchhh----hhhhhcCCcEEEEeccccccccCCccccccccccCchHHHHHhhhhhcCCCCCCceEEee
Q 004491 491 KGLPIIGAGAGTGISA----KFEEAGGVDLIVLYNSGRFRMAGRGSLAGLLPFADANAVVLEMANEVLPVVKEVPVLAGV 566 (749)
Q Consensus 491 ~~~piig~gaGtGlsA----k~ae~gGaDli~~ynsGrfR~~G~~SlagllpygdaN~iv~e~~~eilp~v~~tPViaGv 566 (749)
+|-.|-..-+-.-.++ ++||+-++.+||-...|..+..|.. -.=.++..++++ .+.+||.-
T Consensus 16 ~~yAVgAfN~~n~e~~~avi~AAee~~sPvIiq~s~~~~~~~g~~---------~~~~~~~~~a~~----~~~VPVal-- 80 (347)
T PRK09196 16 HGYGVPAFNVNNLEQVQAIMEAADETDSPVILQASAGARKYAGEP---------FLRHLILAAVEE----YPHIPVVM-- 80 (347)
T ss_pred cCceEEEeeeCCHHHHHHHHHHHHHhCCCEEEECCccHhhhCCHH---------HHHHHHHHHHHh----CCCCcEEE--
Confidence 3444444444444444 5789999999998877765544421 112233334433 22356543
Q ss_pred ccCCCCCCHHHHHHHHHHcCccceecCCcccccchhhhhhhhhcCCchHHHH----HHHHHHHHcCCcc-----------
Q 004491 567 CGTDPFRRVDYFLKQLESIGFFGVQNFPTVGLFDGNFRQNLEETGMGYGLEV----EMIDKAHKMGLLT----------- 631 (749)
Q Consensus 567 ~atDP~~~~~~~l~~lk~~Gf~GV~NfPTvgliDG~fR~~LEe~G~gy~~EV----emi~~A~~~gl~T----------- 631 (749)
-.|=-.+.+. +.+..+.||+.| +|||+.-.+ ..+-+.|+.-| +..+.||..|+..
T Consensus 81 -HLDHg~~~e~-i~~ai~~GftSV-------MiDgS~l~~-~~~~~p~eENI~~Tkevve~Ah~~Gv~VEaELG~vgg~e 150 (347)
T PRK09196 81 -HQDHGNSPAT-CQRAIQLGFTSV-------MMDGSLKAD-GKTPASYEYNVDVTRKVVEMAHACGVSVEGELGCLGSLE 150 (347)
T ss_pred -ECCCCCCHHH-HHHHHHcCCCEE-------EecCCCCcc-cCCCCCHHHHHHHHHHHHHHHHHcCCeEEEEEeeccCcc
Confidence 2344445554 666667899776 799873211 11112333333 4455666555421
Q ss_pred ------------------cccccCHHHHHHHHh-ccCcEEEeccCCCccccccc-ccc-cCHHHHHHHHHHHHHHHHHhC
Q 004491 632 ------------------TPYAFNEGEAVKMAK-AGADIIVAHMGLTTSGSIGA-KTA-LSLDESVDRVQAIADAAHRIN 690 (749)
Q Consensus 632 ------------------~~yvf~~eqa~~Ma~-AGaDiiv~h~GlT~gG~~Ga-~~~-~sl~~~~~~~~~i~~aa~~~~ 690 (749)
-.+..++|||+++.+ -|+|.|-+=+|-..|-..+. +.. .-| -.+++++|.++.
T Consensus 151 ~~~~g~~~~~~~~~~~~~~~~~T~PeeA~~Fv~~TgvD~LAvaiGT~HG~Yk~~~~p~~~~L--dfdrL~eI~~~v---- 224 (347)
T PRK09196 151 TGMGGEEDGHGAEGKLSHDQLLTDPEEAADFVKKTQVDALAIAIGTSHGAYKFTRKPTGDVL--AIDRIKEIHARL---- 224 (347)
T ss_pred ccccccccCcccccccchhhcCCCHHHHHHHHHHhCcCeEhhhhccccCCCCCCCCCChhhc--cHHHHHHHHhcC----
Confidence 123557999999985 69999999888776666542 111 112 234667775543
Q ss_pred CCeEEEEccCC
Q 004491 691 PDAIVLCHGGP 701 (749)
Q Consensus 691 pdii~l~hGGP 701 (749)
|++-+..|||-
T Consensus 225 ~~vPLVLHGgS 235 (347)
T PRK09196 225 PNTHLVMHGSS 235 (347)
T ss_pred CCCCEEEeCCC
Confidence 45666789995
No 145
>PRK13210 putative L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=92.44 E-value=2.8 Score=43.64 Aligned_cols=143 Identities=13% Similarity=0.097 Sum_probs=83.8
Q ss_pred EeeccCC-C-CCCHHHHHHHHHHcCccceecCCcccccchhhhhhhhhcCCchHHHHHHHHHHHHcCCcccccc------
Q 004491 564 AGVCGTD-P-FRRVDYFLKQLESIGFFGVQNFPTVGLFDGNFRQNLEETGMGYGLEVEMIDKAHKMGLLTTPYA------ 635 (749)
Q Consensus 564 aGv~atD-P-~~~~~~~l~~lk~~Gf~GV~NfPTvgliDG~fR~~LEe~G~gy~~EVemi~~A~~~gl~T~~yv------ 635 (749)
.|+.-.+ | ..++++.++.++++||.||.=.+. + ....+...+++.+.=-++-+.+++.||-..++.
T Consensus 5 ~g~~~~~~~~~~~~~e~~~~~~~~G~~~iEl~~~----~--~~~~~~~~~~~~~~~~~l~~~l~~~Gl~i~~~~~~~~~~ 78 (284)
T PRK13210 5 LGIYEKALPKHLSWEERLVFAKELGFDFVEMSVD----E--SDERLARLDWSKEERLSLVKAIYETGVRIPSMCLSGHRR 78 (284)
T ss_pred cchhhhhcCCCCCHHHHHHHHHHcCCCeEEEecC----C--cccccccccCCHHHHHHHHHHHHHcCCCceEEecccccC
Confidence 3555544 4 368999999999999999974321 1 111111112222222344456777776543321
Q ss_pred -----cCH----------HHHHHH-HhccCcEEEeccCCCcccccccccccCHHHHHHHHHHHHHHHHHhCCCeEEEEcc
Q 004491 636 -----FNE----------GEAVKM-AKAGADIIVAHMGLTTSGSIGAKTALSLDESVDRVQAIADAAHRINPDAIVLCHG 699 (749)
Q Consensus 636 -----f~~----------eqa~~M-a~AGaDiiv~h~GlT~gG~~Ga~~~~sl~~~~~~~~~i~~aa~~~~pdii~l~hG 699 (749)
.++ +++-++ .+.|++.|+.+ |.+. ....+...+.+.+++..+++.+.|.+.+=.+.+=-|+
T Consensus 79 ~~~~~~d~~~r~~~~~~~~~~i~~a~~lG~~~v~~~-~~~~--~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~l~lE~~~ 155 (284)
T PRK13210 79 FPFGSRDPATRERALEIMKKAIRLAQDLGIRTIQLA-GYDV--YYEEKSEETRQRFIEGLAWAVEQAAAAQVMLAVEIMD 155 (284)
T ss_pred cCCCCCCHHHHHHHHHHHHHHHHHHHHhCCCEEEEC-Cccc--ccccccHHHHHHHHHHHHHHHHHHHHhCCEEEEEecC
Confidence 122 122223 47899999975 3221 1112234567888889999988888776432222456
Q ss_pred CC-CCCHHHHHHHHhhC
Q 004491 700 GP-ISSPSEAEFILKRT 715 (749)
Q Consensus 700 GP-i~~p~d~~~~l~~~ 715 (749)
++ +.+++++..+++.+
T Consensus 156 ~~~~~~~~~~~~l~~~v 172 (284)
T PRK13210 156 TPFMNSISKWKKWDKEI 172 (284)
T ss_pred ccccCCHHHHHHHHHHc
Confidence 65 68899999999864
No 146
>PRK06256 biotin synthase; Validated
Probab=92.40 E-value=17 Score=39.44 Aligned_cols=216 Identities=15% Similarity=0.179 Sum_probs=124.5
Q ss_pred cccCCCCCCC-CCCcccccHHHHHHHHHHHhhcCCCeEEeccccchhhhhhhhcCCcEEEEeccccccccCCcccccccc
Q 004491 460 ICYSPSNFPD-ARPETLQRTQAILSKLKYQIDKGLPIIGAGAGTGISAKFEEAGGVDLIVLYNSGRFRMAGRGSLAGLLP 538 (749)
Q Consensus 460 ~~~~~~~~~~-~~~~~~~~r~~il~~L~~~i~~~~piig~gaGtGlsAk~ae~gGaDli~~ynsGrfR~~G~~Slagllp 538 (749)
.|+.+..+.. .+....++.++|++..+.-.+.|. .-+.++.+|. -|
T Consensus 74 fC~~~~~~~~~~~~~~~~s~eeI~~~~~~~~~~g~---------------------~~~~l~~~g~------------~p 120 (336)
T PRK06256 74 YCSQSAGSSAPVYRYAWLDIEELIEAAKEAIEEGA---------------------GTFCIVASGR------------GP 120 (336)
T ss_pred cCCCcCCCCCCCceecCCCHHHHHHHHHHHHHCCC---------------------CEEEEEecCC------------CC
Confidence 4776665542 122346789999998887554432 2122222221 11
Q ss_pred ccCchHHHHHhhhhhcCCCCCCceEEeeccCCCCCCHHHHHHHHHHcCcccee-cCCcccccchhhhhhhhhcCCchHHH
Q 004491 539 FADANAVVLEMANEVLPVVKEVPVLAGVCGTDPFRRVDYFLKQLESIGFFGVQ-NFPTVGLFDGNFRQNLEETGMGYGLE 617 (749)
Q Consensus 539 ygdaN~iv~e~~~eilp~v~~tPViaGv~atDP~~~~~~~l~~lk~~Gf~GV~-NfPTvgliDG~fR~~LEe~G~gy~~E 617 (749)
...-=+.+.|+.++|--. .++.+ |++-.. --++.+++||+.|+..|. |+=| +-++.+.+- .+-.|+.=
T Consensus 121 ~~~~~~~~~e~i~~i~~~-~~i~~----~~~~g~-l~~e~l~~LkeaG~~~v~~~lEt----s~~~~~~i~-~~~t~~~~ 189 (336)
T PRK06256 121 SGKEVDQVVEAVKAIKEE-TDLEI----CACLGL-LTEEQAERLKEAGVDRYNHNLET----SRSYFPNVV-TTHTYEDR 189 (336)
T ss_pred CchHHHHHHHHHHHHHhc-CCCcE----EecCCc-CCHHHHHHHHHhCCCEEecCCcc----CHHHHhhcC-CCCCHHHH
Confidence 111113455555544322 12222 233223 345788999999999884 3333 234555554 35589988
Q ss_pred HHHHHHHHHcCCccccc-c----cCHHHHHHH----HhccCcEEEeccCCCcccc-cccccccCHHHHHHHHHHHHHHHH
Q 004491 618 VEMIDKAHKMGLLTTPY-A----FNEGEAVKM----AKAGADIIVAHMGLTTSGS-IGAKTALSLDESVDRVQAIADAAH 687 (749)
Q Consensus 618 Vemi~~A~~~gl~T~~y-v----f~~eqa~~M----a~AGaDiiv~h~GlT~gG~-~Ga~~~~sl~~~~~~~~~i~~aa~ 687 (749)
++.|+.|++.|+-+... . -+.+|...+ .+.|+|.+-.|.=.-..|+ +......|.++.++.+ ..++
T Consensus 190 i~~i~~a~~~Gi~v~~~~I~GlgEt~ed~~~~~~~l~~l~~~~v~i~~l~P~pGT~l~~~~~~~~~e~l~~i----a~~R 265 (336)
T PRK06256 190 IDTCEMVKAAGIEPCSGGIIGMGESLEDRVEHAFFLKELDADSIPINFLNPIPGTPLENHPELTPLECLKTI----AIFR 265 (336)
T ss_pred HHHHHHHHHcCCeeccCeEEeCCCCHHHHHHHHHHHHhCCCCEEeecccccCCCCCCCCCCCCCHHHHHHHH----HHHH
Confidence 99999999999855432 3 345555544 4679997766642222333 3334456777776543 4678
Q ss_pred HhCCCeEEEEccCCCCCHHHHHHHHhhCCCccEEecCc
Q 004491 688 RINPDAIVLCHGGPISSPSEAEFILKRTKGVHGFYGAS 725 (749)
Q Consensus 688 ~~~pdii~l~hGGPi~~p~d~~~~l~~~~~~~Gf~g~S 725 (749)
-..|+..+-+-||--..-.|.|...= .++.|-+-+-
T Consensus 266 l~~p~~~I~~~~gr~~~~~~~~~~~~--~g~~~~~~g~ 301 (336)
T PRK06256 266 LINPDKEIRIAGGREVNLRSLQPLGL--GGANSVIVGN 301 (336)
T ss_pred HHCCCCeeEecCchhhhchhhHHHHh--ccCceeeECC
Confidence 88899998777886445566665541 3666665444
No 147
>cd02801 DUS_like_FMN Dihydrouridine synthase-like (DUS-like) FMN-binding domain. Members of this family catalyze the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archaea. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. 1VHN, a putative flavin oxidoreductase, has high sequence similarity to DUS. The enzymatic mechanism of 1VHN is not known at the present.
Probab=92.38 E-value=1.5 Score=44.52 Aligned_cols=158 Identities=22% Similarity=0.230 Sum_probs=92.3
Q ss_pred HHHHHHhhcCCCeEEeccccc-----hhhhhhhhcCCcEEEEecccc----ccccCCccccccccccCchHHHHHhhhhh
Q 004491 483 SKLKYQIDKGLPIIGAGAGTG-----ISAKFEEAGGVDLIVLYNSGR----FRMAGRGSLAGLLPFADANAVVLEMANEV 553 (749)
Q Consensus 483 ~~L~~~i~~~~piig~gaGtG-----lsAk~ae~gGaDli~~ynsGr----fR~~G~~SlagllpygdaN~iv~e~~~ei 553 (749)
.++..+...+.|++.--.|.- -.|+.+.+.|+|.|=+ |.|- -|-.+.|+. ..+--+.+.|+.++|
T Consensus 45 ~~~~~~~~~~~p~~~qi~g~~~~~~~~aa~~~~~aG~d~iel-n~g~p~~~~~~~~~G~~-----l~~~~~~~~eii~~v 118 (231)
T cd02801 45 LRLLTRNPEERPLIVQLGGSDPETLAEAAKIVEELGADGIDL-NMGCPSPKVTKGGAGAA-----LLKDPELVAEIVRAV 118 (231)
T ss_pred HHhhccCccCCCEEEEEcCCCHHHHHHHHHHHHhcCCCEEEE-eCCCCHHHHhCCCeeeh-----hcCCHHHHHHHHHHH
Confidence 445556677888887555542 3788888889998876 3331 121221111 112224556665544
Q ss_pred cCCCCCCceEEeeccCC-CCCCHHHHHHHHHHcCccceecCCcccccchhhhhhhhhcCCchHHHHHHHHHHHH---cCC
Q 004491 554 LPVVKEVPVLAGVCGTD-PFRRVDYFLKQLESIGFFGVQNFPTVGLFDGNFRQNLEETGMGYGLEVEMIDKAHK---MGL 629 (749)
Q Consensus 554 lp~v~~tPViaGv~atD-P~~~~~~~l~~lk~~Gf~GV~NfPTvgliDG~fR~~LEe~G~gy~~EVemi~~A~~---~gl 629 (749)
--.+. .||...+...+ +..+..++++.|.+.|...|. | .+..++. ...-++ ..+.+++.++ .-+
T Consensus 119 ~~~~~-~~v~vk~r~~~~~~~~~~~~~~~l~~~Gvd~i~----v---~~~~~~~--~~~~~~--~~~~~~~i~~~~~ipv 186 (231)
T cd02801 119 REAVP-IPVTVKIRLGWDDEEETLELAKALEDAGASALT----V---HGRTREQ--RYSGPA--DWDYIAEIKEAVSIPV 186 (231)
T ss_pred HHhcC-CCEEEEEeeccCCchHHHHHHHHHHHhCCCEEE----E---CCCCHHH--cCCCCC--CHHHHHHHHhCCCCeE
Confidence 43343 79999887543 323788999999999988873 1 1211111 011112 2345555554 233
Q ss_pred cccccccCHHHHHHHHhc-cCcEEEeccCC
Q 004491 630 LTTPYAFNEGEAVKMAKA-GADIIVAHMGL 658 (749)
Q Consensus 630 ~T~~yvf~~eqa~~Ma~A-GaDiiv~h~Gl 658 (749)
....=+.+.+++.++.++ |||.+.+=-++
T Consensus 187 i~~Ggi~~~~d~~~~l~~~gad~V~igr~~ 216 (231)
T cd02801 187 IANGDIFSLEDALRCLEQTGVDGVMIGRGA 216 (231)
T ss_pred EEeCCCCCHHHHHHHHHhcCCCEEEEcHHh
Confidence 444456689999999998 89998765443
No 148
>cd00019 AP2Ec AP endonuclease family 2; These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites; the alignment also contains hexulose-6-phosphate isomerases, enzymes that catalyze the epimerization of D-arabino-6-hexulose 3-phosphate to D-fructose 6-phosphate, via cleaving the phosphoesterbond with the sugar.
Probab=92.33 E-value=1.7 Score=45.61 Aligned_cols=132 Identities=20% Similarity=0.204 Sum_probs=78.7
Q ss_pred CCHHHHHHHHHHcCccceecCCcccccchhhhhhhhhcCCchHHHHHHHHHHH-Hc-CCccc---ccccC----------
Q 004491 573 RRVDYFLKQLESIGFFGVQNFPTVGLFDGNFRQNLEETGMGYGLEVEMIDKAH-KM-GLLTT---PYAFN---------- 637 (749)
Q Consensus 573 ~~~~~~l~~lk~~Gf~GV~NfPTvgliDG~fR~~LEe~G~gy~~EVemi~~A~-~~-gl~T~---~yvf~---------- 637 (749)
.++++-++.++++||.||+=.+ .-.++.....+ -..+++.++.+- +. ++... +|.++
T Consensus 10 ~~l~~~l~~a~~~G~d~vEl~~--~~~~~~~~~~~------~~~~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~r~ 81 (279)
T cd00019 10 FGLENALKRAKEIGFDTVAMFL--GNPRSWLSRPL------KKERAEKFKAIAEEGPSICLSVHAPYLINLASPDKEKRE 81 (279)
T ss_pred ccHHHHHHHHHHcCCCEEEEEc--CCCCccCCCCC------CHHHHHHHHHHHHHcCCCcEEEEcCceeccCCCCHHHHH
Confidence 7899999999999999996321 00111000000 123455454443 43 33222 45432
Q ss_pred ------HHHHHHHHhccCcEEEeccCCCcccccccccccCHHHHHHHHHHHHHHHHHhCCCeEEEEccCC----CCCHHH
Q 004491 638 ------EGEAVKMAKAGADIIVAHMGLTTSGSIGAKTALSLDESVDRVQAIADAAHRINPDAIVLCHGGP----ISSPSE 707 (749)
Q Consensus 638 ------~eqa~~Ma~AGaDiiv~h~GlT~gG~~Ga~~~~sl~~~~~~~~~i~~aa~~~~pdii~l~hGGP----i~~p~d 707 (749)
..-.+.+.+.|++.++.|.|...+ .......+..++.++++.+.|++.+-.+.+=-|+++ +.++++
T Consensus 82 ~~~~~~~~~i~~A~~lG~~~v~~~~g~~~~----~~~~~~~~~~~~~l~~l~~~a~~~gi~l~lEn~~~~~~~~~~t~~~ 157 (279)
T cd00019 82 KSIERLKDEIERCEELGIRLLVFHPGSYLG----QSKEEGLKRVIEALNELIDKAETKGVVIALETMAGQGNEIGSSFEE 157 (279)
T ss_pred HHHHHHHHHHHHHHHcCCCEEEECCCCCCC----CCHHHHHHHHHHHHHHHHHhccCCCCEEEEeCCCCCCCCCCCCHHH
Confidence 112334458899999999986533 233455677777888888777665432222236777 689999
Q ss_pred HHHHHhhCC
Q 004491 708 AEFILKRTK 716 (749)
Q Consensus 708 ~~~~l~~~~ 716 (749)
+..+++.+.
T Consensus 158 ~~~li~~v~ 166 (279)
T cd00019 158 LKEIIDLIK 166 (279)
T ss_pred HHHHHHhcC
Confidence 999998753
No 149
>PRK05458 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=92.31 E-value=1.4 Score=48.73 Aligned_cols=144 Identities=18% Similarity=0.197 Sum_probs=84.9
Q ss_pred HHhhcCCCeEEeccccchh----hhhhhhc--CCcEEEEeccccccccCCccccccccccCchHHHHHhhhhhcCCCCCC
Q 004491 487 YQIDKGLPIIGAGAGTGIS----AKFEEAG--GVDLIVLYNSGRFRMAGRGSLAGLLPFADANAVVLEMANEVLPVVKEV 560 (749)
Q Consensus 487 ~~i~~~~piig~gaGtGls----Ak~ae~g--GaDli~~ynsGrfR~~G~~SlagllpygdaN~iv~e~~~eilp~v~~t 560 (749)
++++....++++++|+..- +..-.+. |+|+|.+-.+- ++ +..+.|+-++|-...++.
T Consensus 79 r~~~~~~l~v~~~vg~~~~~~~~~~~Lv~ag~~~d~i~iD~a~----------------gh-~~~~~e~I~~ir~~~p~~ 141 (326)
T PRK05458 79 KDMHEQGLIASISVGVKDDEYDFVDQLAAEGLTPEYITIDIAH----------------GH-SDSVINMIQHIKKHLPET 141 (326)
T ss_pred HhccccccEEEEEecCCHHHHHHHHHHHhcCCCCCEEEEECCC----------------Cc-hHHHHHHHHHHHhhCCCC
Confidence 4554445588888887532 2222334 56999986553 22 345666777777777789
Q ss_pred ceEEe-eccCCCCCCHHHHHHHHHHcCccceecCCcccccchhhhhhhhhcCCchH-HHHHHHHHHHH---cCCcccccc
Q 004491 561 PVLAG-VCGTDPFRRVDYFLKQLESIGFFGVQNFPTVGLFDGNFRQNLEETGMGYG-LEVEMIDKAHK---MGLLTTPYA 635 (749)
Q Consensus 561 PViaG-v~atDP~~~~~~~l~~lk~~Gf~GV~NfPTvgliDG~fR~~LEe~G~gy~-~EVemi~~A~~---~gl~T~~yv 635 (749)
||++| |. + .+-.++|.++|+.+|. ||.-.|+-...=..+|.++. -.+..|+.+++ .-++.-+=+
T Consensus 142 ~vi~g~V~------t-~e~a~~l~~aGad~i~----vg~~~G~~~~t~~~~g~~~~~w~l~ai~~~~~~~~ipVIAdGGI 210 (326)
T PRK05458 142 FVIAGNVG------T-PEAVRELENAGADATK----VGIGPGKVCITKIKTGFGTGGWQLAALRWCAKAARKPIIADGGI 210 (326)
T ss_pred eEEEEecC------C-HHHHHHHHHcCcCEEE----ECCCCCcccccccccCCCCCccHHHHHHHHHHHcCCCEEEeCCC
Confidence 99999 55 2 3455888999999953 33333433101011233321 12323333333 344555556
Q ss_pred cCHHHHHHHHhccCcEEEeccCC
Q 004491 636 FNEGEAVKMAKAGADIIVAHMGL 658 (749)
Q Consensus 636 f~~eqa~~Ma~AGaDiiv~h~Gl 658 (749)
.+..++.+...+|||.+.+-=.+
T Consensus 211 ~~~~Di~KaLa~GA~aV~vG~~~ 233 (326)
T PRK05458 211 RTHGDIAKSIRFGATMVMIGSLF 233 (326)
T ss_pred CCHHHHHHHHHhCCCEEEechhh
Confidence 78999999999999987765333
No 150
>TIGR00007 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase. Examples of this enzyme in Actinobacteria have been found to be bifunctional, also possessing phosphoribosylanthranilate isomerase activity ; the trusted cutoff here has now been raised to 275.0 to exclude the bifunctional group, now represented by model TIGR01919. HisA from Lactococcus lactis was reported to be inactive (MEDLINE:93322317).
Probab=92.27 E-value=5.7 Score=40.65 Aligned_cols=170 Identities=18% Similarity=0.175 Sum_probs=95.1
Q ss_pred hhhhhhhcCCcEEEEeccccccccCCccccccccccCchHHHHHhhhhhcCCCCCCceEEeeccCCCCCCHHHHHHHHHH
Q 004491 505 SAKFEEAGGVDLIVLYNSGRFRMAGRGSLAGLLPFADANAVVLEMANEVLPVVKEVPVLAGVCGTDPFRRVDYFLKQLES 584 (749)
Q Consensus 505 sAk~ae~gGaDli~~ynsGrfR~~G~~SlagllpygdaN~iv~e~~~eilp~v~~tPViaGv~atDP~~~~~~~l~~lk~ 584 (749)
.||.-+..|+|-|.++.-..+.. |++ +--+++.++.++ + +.|+..|-.- .-.+=++++.+
T Consensus 33 ~a~~~~~~g~~~l~v~dl~~~~~-g~~---------~~~~~i~~i~~~----~-~~pi~~ggGI-----~~~ed~~~~~~ 92 (230)
T TIGR00007 33 AAKKWEEEGAERIHVVDLDGAKE-GGP---------VNLPVIKKIVRE----T-GVPVQVGGGI-----RSLEDVEKLLD 92 (230)
T ss_pred HHHHHHHcCCCEEEEEeCCcccc-CCC---------CcHHHHHHHHHh----c-CCCEEEeCCc-----CCHHHHHHHHH
Confidence 35556788999999886555432 111 112344444443 2 5799987633 32344577888
Q ss_pred cCccceecCCcccccchhhhhhhhhcCCchHHHHHHHHHHHHcCCccccc------------------ccC-HHHHHHHH
Q 004491 585 IGFFGVQNFPTVGLFDGNFRQNLEETGMGYGLEVEMIDKAHKMGLLTTPY------------------AFN-EGEAVKMA 645 (749)
Q Consensus 585 ~Gf~GV~NfPTvgliDG~fR~~LEe~G~gy~~EVemi~~A~~~gl~T~~y------------------vf~-~eqa~~Ma 645 (749)
.|+..|. .+|..+-| . . .+-+.+++.|.-.+.. -.+ .+-++.+.
T Consensus 93 ~Ga~~vv-lgs~~l~d------~--------~--~~~~~~~~~g~~~i~~sid~~~~~v~~~g~~~~~~~~~~~~~~~~~ 155 (230)
T TIGR00007 93 LGVDRVI-IGTAAVEN------P--------D--LVKELLKEYGPERIVVSLDARGGEVAVKGWLEKSEVSLEELAKRLE 155 (230)
T ss_pred cCCCEEE-EChHHhhC------H--------H--HHHHHHHHhCCCcEEEEEEEECCEEEEcCCcccCCCCHHHHHHHHH
Confidence 9999874 22222211 1 0 0222334433211110 023 35677788
Q ss_pred hccCcEEEeccCCCcccccccccccCHHHHHHHHHHHHHHHHHhCCCeEEEEccCCCCCHHHHHHHHhhCCCccEEecCc
Q 004491 646 KAGADIIVAHMGLTTSGSIGAKTALSLDESVDRVQAIADAAHRINPDAIVLCHGGPISSPSEAEFILKRTKGVHGFYGAS 725 (749)
Q Consensus 646 ~AGaDiiv~h~GlT~gG~~Ga~~~~sl~~~~~~~~~i~~aa~~~~pdii~l~hGGPi~~p~d~~~~l~~~~~~~Gf~g~S 725 (749)
+.|+|-|+.| .++..|+.. ..+ .+.++++.+. .+ +.++.+|-|.+++|++.++ + .+++|.+-||
T Consensus 156 ~~g~~~ii~~-~~~~~g~~~---g~~----~~~i~~i~~~-----~~-ipvia~GGi~~~~di~~~~-~-~Gadgv~ig~ 219 (230)
T TIGR00007 156 ELGLEGIIYT-DISRDGTLS---GPN----FELTKELVKA-----VN-VPVIASGGVSSIDDLIALK-K-LGVYGVIVGK 219 (230)
T ss_pred hCCCCEEEEE-eecCCCCcC---CCC----HHHHHHHHHh-----CC-CCEEEeCCCCCHHHHHHHH-H-CCCCEEEEeH
Confidence 9999977766 444444321 222 2333444332 23 4466678899999999977 4 6899999887
Q ss_pred cc
Q 004491 726 SM 727 (749)
Q Consensus 726 s~ 727 (749)
++
T Consensus 220 a~ 221 (230)
T TIGR00007 220 AL 221 (230)
T ss_pred HH
Confidence 65
No 151
>TIGR00676 fadh2 5,10-methylenetetrahydrofolate reductase, prokaryotic form. This protein is an FAD-containing flavoprotein.
Probab=92.23 E-value=1.9 Score=46.07 Aligned_cols=169 Identities=14% Similarity=0.176 Sum_probs=103.9
Q ss_pred hhcCCcEEEE-eccc-cccccCCccccccccccCchHHHHHhhhhhcCCCCCCceEEeeccCCCCCCHHHHHHHHHHcCc
Q 004491 510 EAGGVDLIVL-YNSG-RFRMAGRGSLAGLLPFADANAVVLEMANEVLPVVKEVPVLAGVCGTDPFRRVDYFLKQLESIGF 587 (749)
Q Consensus 510 e~gGaDli~~-ynsG-rfR~~G~~SlagllpygdaN~iv~e~~~eilp~v~~tPViaGv~atDP~~~~~~~l~~lk~~Gf 587 (749)
...|.|||-+ ||.| +-|+ -.+++++.+.-.. .+|++.=+++.| ++...+...|..+.-
T Consensus 25 ~~~~pd~isvT~~~~~~~~~-----------------~t~~~a~~l~~~~-g~~~i~Hlt~r~--~n~~~l~~~L~~~~~ 84 (272)
T TIGR00676 25 SPLDPDFVSVTYGAGGSTRD-----------------RTVRIVRRIKKET-GIPTVPHLTCIG--ATREEIREILREYRE 84 (272)
T ss_pred hcCCCCEEEeccCCCCCcHH-----------------HHHHHHHHHHHhc-CCCeeEEeeecC--CCHHHHHHHHHHHHH
Confidence 3557899866 7765 5554 2566666655443 578899999999 454445454444444
Q ss_pred cceecCCcccccchhhhhhh-hhcCCchHHHHHHHHHHHHc-CCcccccccCHH----------HHHHH---HhccCcEE
Q 004491 588 FGVQNFPTVGLFDGNFRQNL-EETGMGYGLEVEMIDKAHKM-GLLTTPYAFNEG----------EAVKM---AKAGADII 652 (749)
Q Consensus 588 ~GV~NfPTvgliDG~fR~~L-Ee~G~gy~~EVemi~~A~~~-gl~T~~yvf~~e----------qa~~M---a~AGaDii 652 (749)
.||.|+=.+ -|-....- ++..-.|+.=+++|+..+++ +-|+++-+.++| +.+.| .+||||-+
T Consensus 85 ~Gi~nvL~l---~GD~~~~~~~~~~~~f~~a~~Li~~i~~~~~~f~ig~a~~Peghp~~~~~~~~~~~L~~K~~aGA~f~ 161 (272)
T TIGR00676 85 LGIRHILAL---RGDPPKGEGTPTPGGFNYASELVEFIRNEFGDFDIGVAAYPEKHPEAPNLEEDIENLKRKVDAGADYA 161 (272)
T ss_pred CCCCEEEEe---CCCCCCCCCCCCCCCCCCHHHHHHHHHHhcCCeeEEEEeCCCCCCCCCCHHHHHHHHHHHHHcCCCeE
Confidence 556665311 11111111 24445677778889888886 556666665332 33433 58999999
Q ss_pred EeccCCCcccccccccccCHHHHHHHHHHHHHHHHHhCCCeEEEEccCCCCCHHHHHHHHhhCCCc
Q 004491 653 VAHMGLTTSGSIGAKTALSLDESVDRVQAIADAAHRINPDAIVLCHGGPISSPSEAEFILKRTKGV 718 (749)
Q Consensus 653 v~h~GlT~gG~~Ga~~~~sl~~~~~~~~~i~~aa~~~~pdii~l~hGGPi~~p~d~~~~l~~~~~~ 718 (749)
+..+-.. .+...++.+.+++..-++-++.-=-|+.+...+.++.+ .+++
T Consensus 162 iTQ~~fd----------------~~~~~~~~~~~~~~gi~~PIi~Gi~p~~s~k~~~~~~~-~~Gv 210 (272)
T TIGR00676 162 ITQLFFD----------------NDDYYRFVDRCRAAGIDVPIIPGIMPITNFKQLLRFAE-RCGA 210 (272)
T ss_pred eeccccC----------------HHHHHHHHHHHHHcCCCCCEecccCCcCCHHHHHHHHh-ccCC
Confidence 9887654 24455666677776655555544459999998877775 3543
No 152
>cd02922 FCB2_FMN Flavocytochrome b2 (FCB2) FMN-binding domain. FCB2 (AKA L-lactate:cytochrome c oxidoreductase) is a respiratory enzyme located in the intermembrane space of fungal mitochondria which catalyzes the oxidation of L-lactate to pyruvate. FCB2 also participates in a short electron-transport chain involving cytochrome c and cytochrome oxidase which ultimately directs the reducing equivalents gained from L-lactate oxidation to oxygen, yielding one molecule of ATP for every L-lactate molecule consumed. FCB2 is composed of 2 domains: a C-terminal flavin-binding domain, which includes the active site for lacate oxidation, and an N-terminal b2-cytochrome domain, required for efficient cytochrome c reduction. FCB2 is a homotetramer and contains two noncovalently bound cofactors, FMN and heme per subunit.
Probab=92.13 E-value=4.2 Score=45.26 Aligned_cols=185 Identities=17% Similarity=0.154 Sum_probs=100.9
Q ss_pred hhhhhhhhcCCcEEEEeccccccccCCccccccccccCchHHHHHhhhhhcCCCCCCceEEeeccCCCCCCHHHHHHHHH
Q 004491 504 ISAKFEEAGGVDLIVLYNSGRFRMAGRGSLAGLLPFADANAVVLEMANEVLPVVKEVPVLAGVCGTDPFRRVDYFLKQLE 583 (749)
Q Consensus 504 lsAk~ae~gGaDli~~ynsGrfR~~G~~SlagllpygdaN~iv~e~~~eilp~v~~tPViaGv~atDP~~~~~~~l~~lk 583 (749)
.+|+.|++.|+=+++- |++.. + ..|.+++. -++.|.++=+.-.---..+...+++.+
T Consensus 85 ~~AraA~~~gi~~~ls------------s~s~~-s-------~e~v~~~~---~~~~~~w~Qly~~~d~~~~~~l~~ra~ 141 (344)
T cd02922 85 NLARAAGKHGILQMIS------------TNASC-S-------LEEIVDAR---PPDQPLFFQLYVNKDRTKTEELLKRAE 141 (344)
T ss_pred HHHHHHHHcCCCEEec------------CcccC-C-------HHHHHHhc---CCCCcEEEEEeecCCHHHHHHHHHHHH
Confidence 5789999999887772 11111 1 11222221 124677765543222235678899999
Q ss_pred HcCcccee---cCCcccccchhhhhhhhh-----------------------cCC---chHHHHHHHHHHHHcCCccccc
Q 004491 584 SIGFFGVQ---NFPTVGLFDGNFRQNLEE-----------------------TGM---GYGLEVEMIDKAHKMGLLTTPY 634 (749)
Q Consensus 584 ~~Gf~GV~---NfPTvgliDG~fR~~LEe-----------------------~G~---gy~~EVemi~~A~~~gl~T~~y 634 (749)
+.||..+. |-|..|.=.-..|..+.+ ..+ .--..++-|+..-+. =+-+-.
T Consensus 142 ~ag~~alvltvD~p~~g~r~~d~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~-PvivKg 220 (344)
T cd02922 142 KLGAKAIFLTVDAPVLGKRERDERLKAEEAVSDGPAGKKTKAKGGGAGRAMSGFIDPTLTWDDIKWLRKHTKL-PIVLKG 220 (344)
T ss_pred HcCCCEEEEECCCCCcCcchhhhhhcCCcCccccccccccccccchHHHHHhhccCCCCCHHHHHHHHHhcCC-cEEEEc
Confidence 99998874 455443321111111100 000 111234444433221 223346
Q ss_pred ccCHHHHHHHHhccCcEEEeccCCCcccccccccccCHHHHHHHHHHHHHHHHHhCCCeEEEEccCCCCCHHHHHHHHhh
Q 004491 635 AFNEGEAVKMAKAGADIIVAHMGLTTSGSIGAKTALSLDESVDRVQAIADAAHRINPDAIVLCHGGPISSPSEAEFILKR 714 (749)
Q Consensus 635 vf~~eqa~~Ma~AGaDiiv~h~GlT~gG~~Ga~~~~sl~~~~~~~~~i~~aa~~~~pdii~l~hGGPi~~p~d~~~~l~~ 714 (749)
|.++++|+...++|+|.|++- ..||..- +...+- +..+.+|.++.+++..++-++.-|| |.+..|+-..|.-
T Consensus 221 v~~~~dA~~a~~~G~d~I~vs---nhgG~~~-d~~~~~---~~~L~~i~~~~~~~~~~~~vi~~GG-Ir~G~Dv~kalaL 292 (344)
T cd02922 221 VQTVEDAVLAAEYGVDGIVLS---NHGGRQL-DTAPAP---IEVLLEIRKHCPEVFDKIEVYVDGG-VRRGTDVLKALCL 292 (344)
T ss_pred CCCHHHHHHHHHcCCCEEEEE---CCCcccC-CCCCCH---HHHHHHHHHHHHHhCCCceEEEeCC-CCCHHHHHHHHHc
Confidence 678999999999999998763 2333321 122332 2234566666666666666666666 8899999888844
Q ss_pred CCCccEEe
Q 004491 715 TKGVHGFY 722 (749)
Q Consensus 715 ~~~~~Gf~ 722 (749)
+++.-.
T Consensus 293 --GA~aV~ 298 (344)
T cd02922 293 --GAKAVG 298 (344)
T ss_pred --CCCEEE
Confidence 444433
No 153
>TIGR00736 nifR3_rel_arch TIM-barrel protein, putative. Members of this family show a distant relationship by PSI-BLAST to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase. At least two closely related but well-separable families among the bacteria, the nifR3/yhdG family and the yjbN family, share a more distant relationship to this family of shorter, exclusively archaeal proteins.
Probab=92.05 E-value=2.2 Score=45.03 Aligned_cols=147 Identities=16% Similarity=0.064 Sum_probs=84.9
Q ss_pred CCCceEEeeccCCCCCCHHHHHHHHHHcCccce-ecC--CcccccchhhhhhhhhcCCchHHHHHHHHHHHHcCCccc--
Q 004491 558 KEVPVLAGVCGTDPFRRVDYFLKQLESIGFFGV-QNF--PTVGLFDGNFRQNLEETGMGYGLEVEMIDKAHKMGLLTT-- 632 (749)
Q Consensus 558 ~~tPViaGv~atDP~~~~~~~l~~lk~~Gf~GV-~Nf--PTvgliDG~fR~~LEe~G~gy~~EVemi~~A~~~gl~T~-- 632 (749)
.+.||++-|+++||- ++-...+.+.+ ++.+| .|+ |.==...+...+.|= --.++=.++++..++.+..-+
T Consensus 66 ~~~~vivnv~~~~~e-e~~~~a~~v~~-~~d~IdiN~gCP~~~v~~~g~G~~Ll---~dp~~l~~iv~av~~~~~PVsvK 140 (231)
T TIGR00736 66 SRALVSVNVRFVDLE-EAYDVLLTIAE-HADIIEINAHCRQPEITEIGIGQELL---KNKELLKEFLTKMKELNKPIFVK 140 (231)
T ss_pred hcCCEEEEEecCCHH-HHHHHHHHHhc-CCCEEEEECCCCcHHHcCCCCchhhc---CCHHHHHHHHHHHHcCCCcEEEE
Confidence 478999999999986 44444555544 67766 354 531111111222221 124556788888886554211
Q ss_pred --c-cc--cCHHHHHHHHhccCcEEEeccCCCcccccccccccCHHHHHHHHHHHHHHHHHhCCCeEEEEccCCCCCHHH
Q 004491 633 --P-YA--FNEGEAVKMAKAGADIIVAHMGLTTSGSIGAKTALSLDESVDRVQAIADAAHRINPDAIVLCHGGPISSPSE 707 (749)
Q Consensus 633 --~-yv--f~~eqa~~Ma~AGaDiiv~h~GlT~gG~~Ga~~~~sl~~~~~~~~~i~~aa~~~~pdii~l~hGGPi~~p~d 707 (749)
+ +. -..+=|+++.++|||.|.+|.+. .|+ +. -..+.+.+| ....+ ++.|+.-| -|.+++|
T Consensus 141 iR~~~~~~~~~~~a~~l~~aGad~i~Vd~~~-~g~--~~-------a~~~~I~~i---~~~~~-~ipIIgNG-gI~s~ed 205 (231)
T TIGR00736 141 IRGNCIPLDELIDALNLVDDGFDGIHVDAMY-PGK--PY-------ADMDLLKIL---SEEFN-DKIIIGNN-SIDDIES 205 (231)
T ss_pred eCCCCCcchHHHHHHHHHHcCCCEEEEeeCC-CCC--ch-------hhHHHHHHH---HHhcC-CCcEEEEC-CcCCHHH
Confidence 1 11 12366778889999999999533 221 11 112333333 33333 35565554 5999999
Q ss_pred HHHHHhhCCCccEEecCcc
Q 004491 708 AEFILKRTKGVHGFYGASS 726 (749)
Q Consensus 708 ~~~~l~~~~~~~Gf~g~Ss 726 (749)
+..+++ .+++|.--++.
T Consensus 206 a~e~l~--~GAd~VmvgR~ 222 (231)
T TIGR00736 206 AKEMLK--AGADFVSVARA 222 (231)
T ss_pred HHHHHH--hCCCeEEEcHh
Confidence 999996 47888755543
No 154
>PF01081 Aldolase: KDPG and KHG aldolase; InterPro: IPR000887 4-Hydroxy-2-oxoglutarate aldolase (4.1.3.16 from EC) (KHG-aldolase) catalyzes the interconversion of 4-hydroxy-2-oxoglutarate into pyruvate and glyoxylate. Phospho-2-dehydro-3-deoxygluconate aldolase (4.1.2.14 from EC) (KDPG-aldolase) catalyzes the interconversion of 6-phospho-2-dehydro-3-deoxy-D-gluconate into pyruvate and glyceraldehyde 3-phosphate. These two enzymes are structurally and functionally related []. They are both homotrimeric proteins of approximately 220 amino-acid residues. They are class I aldolases whose catalytic mechanism involves the formation of a Schiff-base intermediate between the substrate and the epsilon-amino group of a lysine residue. In both enzymes, an arginine is required for catalytic activity.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VCR_A 1FQ0_A 1EUN_A 1EUA_B 1FWR_A 2C0A_B 1WBH_A 1WAU_A 2YW3_B 2YW4_A ....
Probab=92.02 E-value=0.55 Score=48.38 Aligned_cols=88 Identities=26% Similarity=0.322 Sum_probs=70.3
Q ss_pred HHHHHHHHcCCcccccccCHHHHHHHHhccCcEEEeccCCCcccccccccccCHHHHHHHHHHHHHHHHHhCCCeEEEEc
Q 004491 619 EMIDKAHKMGLLTTPYAFNEGEAVKMAKAGADIIVAHMGLTTSGSIGAKTALSLDESVDRVQAIADAAHRINPDAIVLCH 698 (749)
Q Consensus 619 emi~~A~~~gl~T~~yvf~~eqa~~Ma~AGaDiiv~h~GlT~gG~~Ga~~~~sl~~~~~~~~~i~~aa~~~~pdii~l~h 698 (749)
|+++.|++.|+..+|=|+|+.|+.+..++|+|++=....-..||. ...++-+.-=|++-++.-
T Consensus 92 ~v~~~~~~~~i~~iPG~~TptEi~~A~~~G~~~vK~FPA~~~GG~-----------------~~ik~l~~p~p~~~~~pt 154 (196)
T PF01081_consen 92 EVIEYAREYGIPYIPGVMTPTEIMQALEAGADIVKLFPAGALGGP-----------------SYIKALRGPFPDLPFMPT 154 (196)
T ss_dssp HHHHHHHHHTSEEEEEESSHHHHHHHHHTT-SEEEETTTTTTTHH-----------------HHHHHHHTTTTT-EEEEB
T ss_pred HHHHHHHHcCCcccCCcCCHHHHHHHHHCCCCEEEEecchhcCcH-----------------HHHHHHhccCCCCeEEEc
Confidence 679999999999999999999999999999999999988666654 234455666789999988
Q ss_pred cCCCCCHHHHHHHHhhCCCccEEecCccc
Q 004491 699 GGPISSPSEAEFILKRTKGVHGFYGASSM 727 (749)
Q Consensus 699 GGPi~~p~d~~~~l~~~~~~~Gf~g~Ss~ 727 (749)
|| -+++++...++. +..+..++|++
T Consensus 155 GG--V~~~N~~~~l~a--g~~~vg~Gs~L 179 (196)
T PF01081_consen 155 GG--VNPDNLAEYLKA--GAVAVGGGSWL 179 (196)
T ss_dssp SS----TTTHHHHHTS--TTBSEEEESGG
T ss_pred CC--CCHHHHHHHHhC--CCEEEEECchh
Confidence 98 577899999966 45678888876
No 155
>cd02803 OYE_like_FMN_family Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=92.02 E-value=6.5 Score=42.35 Aligned_cols=159 Identities=19% Similarity=0.177 Sum_probs=92.4
Q ss_pred ccccHHHHHHHHHHHhhcCCCeEEeccccchhhhhhhhcCCcEEEEeccccc------------cccC-Ccccccccccc
Q 004491 474 TLQRTQAILSKLKYQIDKGLPIIGAGAGTGISAKFEEAGGVDLIVLYNSGRF------------RMAG-RGSLAGLLPFA 540 (749)
Q Consensus 474 ~~~~r~~il~~L~~~i~~~~piig~gaGtGlsAk~ae~gGaDli~~ynsGrf------------R~~G-~~Slagllpyg 540 (749)
.-||.+||-+-.++-+ -.||.+++.|.|-|=+.-..-| |... -||+ -
T Consensus 129 ~~mt~~ei~~~i~~~~--------------~aA~~a~~aGfDgveih~~~gyL~~qFlsp~~n~R~d~yGgs~------e 188 (327)
T cd02803 129 REMTKEEIEQIIEDFA--------------AAARRAKEAGFDGVEIHGAHGYLLSQFLSPYTNKRTDEYGGSL------E 188 (327)
T ss_pred CcCCHHHHHHHHHHHH--------------HHHHHHHHcCCCEEEEcchhhhHHHHhcCccccCCCcccCCCH------H
Confidence 3478888876555443 4799999999999987643222 1111 0111 1
Q ss_pred CchHHHHHhhhhhcCCC-CCCceEEeeccCCCC------CCHHHHHHHHHHcCccceecCCcccccchhhhhhh-hhcCC
Q 004491 541 DANAVVLEMANEVLPVV-KEVPVLAGVCGTDPF------RRVDYFLKQLESIGFFGVQNFPTVGLFDGNFRQNL-EETGM 612 (749)
Q Consensus 541 daN~iv~e~~~eilp~v-~~tPViaGv~atDP~------~~~~~~l~~lk~~Gf~GV~NfPTvgliDG~fR~~L-Ee~G~ 612 (749)
|--.++.|..++|--.+ .+.||..=++..|.+ -+..+++++|.+.|...|.=...- ........- ...+-
T Consensus 189 nr~r~~~eii~avr~~~g~d~~i~vris~~~~~~~g~~~~e~~~la~~l~~~G~d~i~vs~g~--~~~~~~~~~~~~~~~ 266 (327)
T cd02803 189 NRARFLLEIVAAVREAVGPDFPVGVRLSADDFVPGGLTLEEAIEIAKALEEAGVDALHVSGGS--YESPPPIIPPPYVPE 266 (327)
T ss_pred HHHHHHHHHHHHHHHHcCCCceEEEEechhccCCCCCCHHHHHHHHHHHHHcCCCEEEeCCCC--CcccccccCCCCCCc
Confidence 22234455554444444 367888777766533 345678999999998877421100 000000000 00111
Q ss_pred chHHH-HHHHHHHHHcCCcccccccCHHHHHHHHhc-cCcEEEe
Q 004491 613 GYGLE-VEMIDKAHKMGLLTTPYAFNEGEAVKMAKA-GADIIVA 654 (749)
Q Consensus 613 gy~~E-Vemi~~A~~~gl~T~~yvf~~eqa~~Ma~A-GaDiiv~ 654 (749)
++..+ +..|+++-+.-+....-+++.++++++.++ |||++..
T Consensus 267 ~~~~~~~~~ir~~~~iPVi~~Ggi~t~~~a~~~l~~g~aD~V~i 310 (327)
T cd02803 267 GYFLELAEKIKKAVKIPVIAVGGIRDPEVAEEILAEGKADLVAL 310 (327)
T ss_pred chhHHHHHHHHHHCCCCEEEeCCCCCHHHHHHHHHCCCCCeeee
Confidence 23332 355666656677778888999999999998 7998764
No 156
>cd02930 DCR_FMN 2,4-dienoyl-CoA reductase (DCR) FMN-binding domain. DCR in E. coli is an iron-sulfur flavoenzyme which contains FMN, FAD, and a 4Fe-4S cluster. It is also a monomer, unlike that of its eukaryotic counterparts which form homotetramers and lack the flavin and iron-sulfur cofactors. Metabolism of unsaturated fatty acids requires auxiliary enzymes in addition to those used in b-oxidation. After a given number of cycles through the b-oxidation pathway, those unsaturated fatty acyl-CoAs with double bonds at even-numbered carbon positions contain 2-trans, 4-cis double bonds that can not be modified by enoyl-CoA hydratase. DCR utilizes NADPH to remove the C4-C5 double bond. DCR can catalyze the reduction of both natural fatty acids with cis double bonds, as well as substrates containing trans double bonds. The reaction is initiated by hybrid transfer from NADPH to FAD, which in turn transfers electrons, one at a time, to FMN via the 4Fe-4S cluster. The fully reduced FMN provi
Probab=91.96 E-value=4 Score=45.04 Aligned_cols=158 Identities=16% Similarity=0.165 Sum_probs=85.0
Q ss_pred cccHHHHHHHHHHHhhcCCCeEEeccccchhhhhhhhcCCcEEEEeccc----------cc--cccC-CccccccccccC
Q 004491 475 LQRTQAILSKLKYQIDKGLPIIGAGAGTGISAKFEEAGGVDLIVLYNSG----------RF--RMAG-RGSLAGLLPFAD 541 (749)
Q Consensus 475 ~~~r~~il~~L~~~i~~~~piig~gaGtGlsAk~ae~gGaDli~~ynsG----------rf--R~~G-~~Slagllpygd 541 (749)
-||.+||-+-.+.-++ .|+.|.+.|.|-|=++-.- ++ |-.. -||+ -|
T Consensus 126 ~mt~~eI~~i~~~f~~--------------aA~~a~~aGfDgVeih~ahGyLl~qFlsp~~N~RtD~yGGsl------en 185 (353)
T cd02930 126 ELSEEEIEQTIEDFAR--------------CAALAREAGYDGVEIMGSEGYLINQFLAPRTNKRTDEWGGSF------EN 185 (353)
T ss_pred CCCHHHHHHHHHHHHH--------------HHHHHHHcCCCEEEEecccchHHHHhcCCccCCCcCccCCCH------HH
Confidence 3788888765555443 7999999999999875311 11 1110 0121 12
Q ss_pred chHHHHHhhhhhcCCC-CCCceEEeeccCCC------CCCHHHHHHHHHHcCccceecCCcccccchhhhhhhhhcCCch
Q 004491 542 ANAVVLEMANEVLPVV-KEVPVLAGVCGTDP------FRRVDYFLKQLESIGFFGVQNFPTVGLFDGNFRQNLEETGMGY 614 (749)
Q Consensus 542 aN~iv~e~~~eilp~v-~~tPViaGv~atDP------~~~~~~~l~~lk~~Gf~GV~NfPTvgliDG~fR~~LEe~G~gy 614 (749)
-=..++|+.+.|--.+ ++.||..=+++.|= .-+.-+|++.|.+.|..=| +. |.|.+....+..=...+-++
T Consensus 186 R~r~~~eiv~aIR~~vG~d~~v~iRi~~~D~~~~g~~~~e~~~i~~~Le~~G~d~i-~v-s~g~~e~~~~~~~~~~~~~~ 263 (353)
T cd02930 186 RMRFPVEIVRAVRAAVGEDFIIIYRLSMLDLVEGGSTWEEVVALAKALEAAGADIL-NT-GIGWHEARVPTIATSVPRGA 263 (353)
T ss_pred HhHHHHHHHHHHHHHcCCCceEEEEecccccCCCCCCHHHHHHHHHHHHHcCCCEE-Ee-CCCcCCCCCccccccCCchh
Confidence 2344555554443334 36677655555541 1234478889998884221 11 11222111110000012233
Q ss_pred HHH-HHHHHHHHHcCCcccccccCHHHHHHHHhcc-CcEEEe
Q 004491 615 GLE-VEMIDKAHKMGLLTTPYAFNEGEAVKMAKAG-ADIIVA 654 (749)
Q Consensus 615 ~~E-Vemi~~A~~~gl~T~~yvf~~eqa~~Ma~AG-aDiiv~ 654 (749)
..+ .+-|+++-..=+++..-++++++++++.+.| +|++-.
T Consensus 264 ~~~~~~~ik~~v~iPVi~~G~i~~~~~a~~~i~~g~~D~V~~ 305 (353)
T cd02930 264 FAWATAKLKRAVDIPVIASNRINTPEVAERLLADGDADMVSM 305 (353)
T ss_pred hHHHHHHHHHhCCCCEEEcCCCCCHHHHHHHHHCCCCChhHh
Confidence 333 3455555544566667788999999999876 898754
No 157
>PF02219 MTHFR: Methylenetetrahydrofolate reductase; InterPro: IPR003171 This family includes the 5,10-methylenetetrahydrofolate reductase 1.7.99.5 from EC from bacteria and methylenetetrahydrofolate reductase 1.5.1.20 from EC from eukaryotes. The structure for this domain is known [] to be a TIM barrel.; GO: 0004489 methylenetetrahydrofolate reductase (NADPH) activity, 0006555 methionine metabolic process, 0055114 oxidation-reduction process; PDB: 3IJD_B 1B5T_B 3FSU_C 1ZPT_C 2FMO_B 3FST_C 2FMN_C 1ZP3_A 1ZP4_B 1ZRQ_B ....
Probab=91.89 E-value=1.6 Score=46.78 Aligned_cols=206 Identities=19% Similarity=0.221 Sum_probs=110.8
Q ss_pred HHHHHhhcCCCeEEecccc-----c---h--hhhhhhhcCCcEE-EEeccccccccCCccccccccccCchHHHHHhhhh
Q 004491 484 KLKYQIDKGLPIIGAGAGT-----G---I--SAKFEEAGGVDLI-VLYNSGRFRMAGRGSLAGLLPFADANAVVLEMANE 552 (749)
Q Consensus 484 ~L~~~i~~~~piig~gaGt-----G---l--sAk~ae~gGaDli-~~ynsGrfR~~G~~SlagllpygdaN~iv~e~~~e 552 (749)
+|++++++|++.+-+=.-- + + .++...+.++|+| |++|.+- ..-.....++..
T Consensus 1 ~~~~~l~~~~~~~s~E~~PPk~~~~~~~l~~~~~~l~~~~pd~vsVTd~~~~----------------~~~~~s~~~a~~ 64 (287)
T PF02219_consen 1 KFQQKLKKGEFVVSFELFPPKGADGEEKLLEAAERLKDLGPDFVSVTDNPGG----------------SSRMMSLLAAAK 64 (287)
T ss_dssp --HHHHHTSS-EEEEEE---SSHHHHHHHHHHHHHHHTT--SEEEE---GCG----------------TTHHHHHHHHHH
T ss_pred ChhHHHhCCCCEEEEEEeCCCCchHHHHHHHHHHHhcCCCCCEEEeecCCCC----------------cccCCcHHHHHH
Confidence 4778888888887653321 1 1 1233455678999 5577654 122333444444
Q ss_pred hcCCCCCCceEEeeccCCCCCCHHHHHHHHHHcCccceecCCcccccchhhhhh---hhhcCCchHHHHHHHHHHHH--c
Q 004491 553 VLPVVKEVPVLAGVCGTDPFRRVDYFLKQLESIGFFGVQNFPTVGLFDGNFRQN---LEETGMGYGLEVEMIDKAHK--M 627 (749)
Q Consensus 553 ilp~v~~tPViaGv~atDP~~~~~~~l~~lk~~Gf~GV~NfPTvgliDG~fR~~---LEe~G~gy~~EVemi~~A~~--~ 627 (749)
++-. ..+++++-+.+.| ++...+...|..+-..||.|+=-+.. ..-.. ....-..|..-+++|+..++ .
T Consensus 65 l~~~-~g~~~i~Hlt~rd--~n~~~l~~~L~~~~~~Gi~niL~l~G---D~~~~g~~~~~~~~~~~~~~~Li~~i~~~~~ 138 (287)
T PF02219_consen 65 LLKE-TGIEPIPHLTCRD--RNREALQSDLLGAHALGIRNILALTG---DPPKGGDHFAKPVFDFDYALDLIRLIRQEYG 138 (287)
T ss_dssp HHHH-TT--EEEEEESTT--SBHHHHHHHHHHHHHTT--EEEEESS----TSTTSSS----TTS-SSHHHHHHHHHHHHG
T ss_pred HHHH-hCCceEEeecccC--CCHHHHHHHHHHHHHcCCCeEEEecC---CCCCCCccccCCCchhHHHHHHHHHHHHhcC
Confidence 4432 2689999999999 67777777777777778888743322 11110 11111224445677777763 3
Q ss_pred CCccccccc---------CH-HHHH---HHHhccCcEEEeccCCCcccccccccccCHHHHHHHHHHHHHHHHHhCCCeE
Q 004491 628 GLLTTPYAF---------NE-GEAV---KMAKAGADIIVAHMGLTTSGSIGAKTALSLDESVDRVQAIADAAHRINPDAI 694 (749)
Q Consensus 628 gl~T~~yvf---------~~-eqa~---~Ma~AGaDiiv~h~GlT~gG~~Ga~~~~sl~~~~~~~~~i~~aa~~~~pdii 694 (749)
+.|+++... |. .|-+ +-.+||||.++..+... .+.+.++.+.+++...++-
T Consensus 139 ~~~~i~va~~P~~hp~~~~~~~~~~~l~~Ki~aGA~f~iTQ~~fd----------------~~~~~~~~~~~~~~g~~~p 202 (287)
T PF02219_consen 139 DDFSIGVAGYPEGHPEAPDFEAELKRLKKKIDAGADFIITQPFFD----------------AEAFERFLDRLREAGIDVP 202 (287)
T ss_dssp GGSEEEEEE-TTHHTTCSSHHHHHHHHHHHHHTTESEEEEEE-SS----------------HHHHHHHHHHHHHTTHTSE
T ss_pred cccccccccCCCCCccccCHHHHHHHHHHHHHCCCCEEeccccCC----------------HHHHHHHHHHHHHcCCCCc
Confidence 345555432 22 2233 44689999999887644 3456777777877766666
Q ss_pred EEEccCCCCCHHHHHHHHhhCCCccEEecCcccccc
Q 004491 695 VLCHGGPISSPSEAEFILKRTKGVHGFYGASSMERL 730 (749)
Q Consensus 695 ~l~hGGPi~~p~d~~~~l~~~~~~~Gf~g~Ss~ERl 730 (749)
++.-==|+.+...++++.+. .++ .+-.+-+||+
T Consensus 203 Ii~GI~p~~s~~~~~~~~~~-~Gv--~iP~~~~~~l 235 (287)
T PF02219_consen 203 IIPGIMPLTSAKSARFLAKL-CGV--DIPDELIERL 235 (287)
T ss_dssp EEEEEE-HCCHHHHHHHHHH-HT---EEEHHHHHHH
T ss_pred EEEEEeccCCHHHHHHHHhc-cCc--cCCHHHHHHH
Confidence 65434499999999999766 354 4444444444
No 158
>PRK08673 3-deoxy-7-phosphoheptulonate synthase; Reviewed
Probab=91.81 E-value=1.2 Score=49.54 Aligned_cols=130 Identities=18% Similarity=0.298 Sum_probs=89.1
Q ss_pred CCceEEeeccCCCCCCHHHHHHHHHHcCccceecCCcccccchhhhhh-hhhcCCchHHHHHHHHH-HHHcCCccccccc
Q 004491 559 EVPVLAGVCGTDPFRRVDYFLKQLESIGFFGVQNFPTVGLFDGNFRQN-LEETGMGYGLEVEMIDK-AHKMGLLTTPYAF 636 (749)
Q Consensus 559 ~tPViaGv~atDP~~~~~~~l~~lk~~Gf~GV~NfPTvgliDG~fR~~-LEe~G~gy~~EVemi~~-A~~~gl~T~~yvf 636 (749)
+..+|||-|.-+....+-+.-++||+.|+.=+.. +.+ .=|.+ -.-.|+| +..++++++ +++.||..+.=+|
T Consensus 93 ~~~~IAGPCsiEs~e~~~~~A~~lk~~ga~~~r~----~~f--KpRTsp~sf~G~g-~~gL~~L~~~~~~~Gl~v~tev~ 165 (335)
T PRK08673 93 KPVVIAGPCSVESEEQILEIARAVKEAGAQILRG----GAF--KPRTSPYSFQGLG-EEGLKLLAEAREETGLPIVTEVM 165 (335)
T ss_pred ceEEEEecCccCCHHHHHHHHHHHHHhchhhccC----cEe--cCCCCCccccccc-HHHHHHHHHHHHHcCCcEEEeeC
Confidence 4558999999999888999999999999872211 111 01222 3556777 777888888 8899999999999
Q ss_pred CHHHHHHHHhccCcEEEeccCCCc-----------cccccccccc--CHHHHHHHHHHHHHHHHHhCCCeEEEEc-cC
Q 004491 637 NEGEAVKMAKAGADIIVAHMGLTT-----------SGSIGAKTAL--SLDESVDRVQAIADAAHRINPDAIVLCH-GG 700 (749)
Q Consensus 637 ~~eqa~~Ma~AGaDiiv~h~GlT~-----------gG~~Ga~~~~--sl~~~~~~~~~i~~aa~~~~pdii~l~h-GG 700 (749)
+++++..+.+. +|++=+=-...+ +--+.-|+.. |++|-...++.|. ..=|++ ++||| |.
T Consensus 166 d~~~~~~l~~~-vd~lqIgAr~~~N~~LL~~va~~~kPViLk~G~~~ti~E~l~A~e~i~---~~GN~~-viL~erG~ 238 (335)
T PRK08673 166 DPRDVELVAEY-VDILQIGARNMQNFDLLKEVGKTNKPVLLKRGMSATIEEWLMAAEYIL---AEGNPN-VILCERGI 238 (335)
T ss_pred CHHHHHHHHHh-CCeEEECcccccCHHHHHHHHcCCCcEEEeCCCCCCHHHHHHHHHHHH---HcCCCe-EEEEECCC
Confidence 99999999999 998866433322 3333445553 4776665555542 122555 56788 55
No 159
>COG1902 NemA NADH:flavin oxidoreductases, Old Yellow Enzyme family [Energy production and conversion]
Probab=91.81 E-value=1.5 Score=49.11 Aligned_cols=171 Identities=19% Similarity=0.287 Sum_probs=105.7
Q ss_pred ccccCCCCCCCC-C-CcccccHHHHHHHHHHHhhcCCCeEEeccccchhhhhhhhcCCcEEEEeccccccccCCcccccc
Q 004491 459 TICYSPSNFPDA-R-PETLQRTQAILSKLKYQIDKGLPIIGAGAGTGISAKFEEAGGVDLIVLYNSGRFRMAGRGSLAGL 536 (749)
Q Consensus 459 ~~~~~~~~~~~~-~-~~~~~~r~~il~~L~~~i~~~~piig~gaGtGlsAk~ae~gGaDli~~ynsGrfR~~G~~Slagl 536 (749)
.+.-|+..++.. + .-.-||++||.+-+++-.+ .|+.|.++|.|-|=++-+-.|= +.-+
T Consensus 120 ~vapS~~~~~~~~~~~pr~mt~~eI~~ii~~f~~--------------AA~rA~~AGFDgVEIH~AhGYL------i~qF 179 (363)
T COG1902 120 AVAPSAIPAPGGRRATPRELTEEEIEEVIEDFAR--------------AARRAKEAGFDGVEIHGAHGYL------LSQF 179 (363)
T ss_pred ccCCCccccccCCCCCCccCCHHHHHHHHHHHHH--------------HHHHHHHcCCCEEEEeeccchH------HHHh
Confidence 333344444432 1 1234788998887777654 5999999999999998766552 2222
Q ss_pred c---------cccCchH----HHHHhhhhhcCCCC-CCceEEeeccCCCC----C---CHHHHHHHHHHcCccceecCCc
Q 004491 537 L---------PFADANA----VVLEMANEVLPVVK-EVPVLAGVCGTDPF----R---RVDYFLKQLESIGFFGVQNFPT 595 (749)
Q Consensus 537 l---------pygdaN~----iv~e~~~eilp~v~-~tPViaGv~atDP~----~---~~~~~l~~lk~~Gf~GV~NfPT 595 (749)
| -||-|=+ +++|..+.|--+|. +.||..=++++|++ . +..++.+.|++.|..-..+
T Consensus 180 lsp~tN~RtD~YGGSlENR~Rf~~EVv~aVr~~vg~~~~vg~Rls~~d~~~~~g~~~~e~~~la~~L~~~G~~d~i~--- 256 (363)
T COG1902 180 LSPLTNKRTDEYGGSLENRARFLLEVVDAVREAVGADFPVGVRLSPDDFFDGGGLTIEEAVELAKALEEAGLVDYIH--- 256 (363)
T ss_pred cCCccCCCCCccCCcHHHHHHHHHHHHHHHHHHhCCCceEEEEECccccCCCCCCCHHHHHHHHHHHHhcCCccEEE---
Confidence 2 2544433 33333322222332 45899999999992 2 4566788888888511111
Q ss_pred ccccchhh--hhhhhhcCCchHHH-HHHHHHHHHcCCcccccccCHHHHHHHHhcc-CcEEEe
Q 004491 596 VGLFDGNF--RQNLEETGMGYGLE-VEMIDKAHKMGLLTTPYAFNEGEAVKMAKAG-ADIIVA 654 (749)
Q Consensus 596 vgliDG~f--R~~LEe~G~gy~~E-Vemi~~A~~~gl~T~~yvf~~eqa~~Ma~AG-aDiiv~ 654 (749)
++.|.. -..+...+-||..+ .+.|+.....=+.++.-.+++++|+++.+.| ||.+-.
T Consensus 257 --vs~~~~~~~~~~~~~~~~~~~~~a~~i~~~~~~pvi~~G~i~~~~~Ae~~l~~g~aDlVa~ 317 (363)
T COG1902 257 --VSEGGYERGGTITVSGPGYQVEFAARIKKAVRIPVIAVGGINDPEQAEEILASGRADLVAM 317 (363)
T ss_pred --eecccccCCCCccccccchhHHHHHHHHHhcCCCEEEeCCCCCHHHHHHHHHcCCCCEEEe
Confidence 111111 11111111566666 5678888788888888899999999999998 998753
No 160
>PRK09856 fructoselysine 3-epimerase; Provisional
Probab=91.78 E-value=3.3 Score=43.05 Aligned_cols=129 Identities=12% Similarity=0.195 Sum_probs=75.2
Q ss_pred CHHHHHHHHHHcCccceecCCcccccchhhhhhhhhcCCchHHHHHHHH-HHHHcCCccccc-------ccC-----HH-
Q 004491 574 RVDYFLKQLESIGFFGVQNFPTVGLFDGNFRQNLEETGMGYGLEVEMID-KAHKMGLLTTPY-------AFN-----EG- 639 (749)
Q Consensus 574 ~~~~~l~~lk~~Gf~GV~NfPTvgliDG~fR~~LEe~G~gy~~EVemi~-~A~~~gl~T~~y-------vf~-----~e- 639 (749)
++.+.|+.++++||.||.=++--.. .|-..+. ..+++.++ ++.+.||-...+ -|| ++
T Consensus 14 ~l~~~l~~~~~~G~~~vEl~~~~~~---~~~~~~~------~~~~~~l~~~~~~~gl~v~s~~~~~~~~~~~~~~~~~~~ 84 (275)
T PRK09856 14 PIEHAFRDASELGYDGIEIWGGRPH---AFAPDLK------AGGIKQIKALAQTYQMPIIGYTPETNGYPYNMMLGDEHM 84 (275)
T ss_pred CHHHHHHHHHHcCCCEEEEccCCcc---ccccccC------chHHHHHHHHHHHcCCeEEEecCcccCcCccccCCCHHH
Confidence 7999999999999999996421000 0000010 11233232 344555532221 122 11
Q ss_pred ------H----HHHHHhccCcEEEeccCCCcccccccccccCHHHHHHHHHHHHHHHHHhCCCeEEEEcc-CC-----CC
Q 004491 640 ------E----AVKMAKAGADIIVAHMGLTTSGSIGAKTALSLDESVDRVQAIADAAHRINPDAIVLCHG-GP-----IS 703 (749)
Q Consensus 640 ------q----a~~Ma~AGaDiiv~h~GlT~gG~~Ga~~~~sl~~~~~~~~~i~~aa~~~~pdii~l~hG-GP-----i~ 703 (749)
. .+...+.||+.|+.|.|.. |... ......+..++.++++.+.|.+. +|.+.+|= +| +.
T Consensus 85 r~~~~~~~~~~i~~a~~lGa~~i~~~~~~~--~~~~-~~~~~~~~~~~~l~~l~~~a~~~--gv~l~iE~~~~~~~~~~~ 159 (275)
T PRK09856 85 RRESLDMIKLAMDMAKEMNAGYTLISAAHA--GYLT-PPNVIWGRLAENLSELCEYAENI--GMDLILEPLTPYESNVVC 159 (275)
T ss_pred HHHHHHHHHHHHHHHHHhCCCEEEEcCCCC--CCCC-CHHHHHHHHHHHHHHHHHHHHHc--CCEEEEecCCCCcccccC
Confidence 1 1334578999999997632 2211 22335677788888888888875 56666552 22 67
Q ss_pred CHHHHHHHHhhCC
Q 004491 704 SPSEAEFILKRTK 716 (749)
Q Consensus 704 ~p~d~~~~l~~~~ 716 (749)
+|+++..+++...
T Consensus 160 t~~~~~~l~~~~~ 172 (275)
T PRK09856 160 NANDVLHALALVP 172 (275)
T ss_pred CHHHHHHHHHHcC
Confidence 8999999998653
No 161
>cd04737 LOX_like_FMN L-Lactate oxidase (LOX) FMN-binding domain. LOX is a member of the family of FMN-containing alpha-hydroxyacid oxidases and catalyzes the oxidation of l-lactate using molecular oxygen to generate pyruvate and H2O2. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO).
Probab=91.73 E-value=4.7 Score=45.04 Aligned_cols=177 Identities=17% Similarity=0.124 Sum_probs=98.4
Q ss_pred hhhhhhhcCCcEEEEeccccccccCCccccccccccCchHHHHHhhhhhcCCCCCCceEEeeccCCCCCCHHHHHHHHHH
Q 004491 505 SAKFEEAGGVDLIVLYNSGRFRMAGRGSLAGLLPFADANAVVLEMANEVLPVVKEVPVLAGVCGTDPFRRVDYFLKQLES 584 (749)
Q Consensus 505 sAk~ae~gGaDli~~ynsGrfR~~G~~SlagllpygdaN~iv~e~~~eilp~v~~tPViaGv~atDP~~~~~~~l~~lk~ 584 (749)
.||.|.+.|+=+++--+ ++.-..|.+.. .++.|.++-+...--.......|++.++
T Consensus 94 ~AraA~~~gi~~~lSt~--------------------s~~s~Eei~~~----~~~~~~wfQlY~~~d~~~~~~ll~rA~~ 149 (351)
T cd04737 94 TARGMAEVGSLFSISTY--------------------SNTSLEEIAKA----SNGGPKWFQLYMSKDDGFNRSLLDRAKA 149 (351)
T ss_pred HHHHHHHcCCCEEecCC--------------------CCCCHHHHHHh----cCCCCeEEEEeecCCHHHHHHHHHHHHH
Confidence 68888999988887322 22222333321 2245677777765555567777788888
Q ss_pred cCccceec---CCcccccch------------hhhhhhhh----------------cCCchHHHHHHHHHHHHcCCcccc
Q 004491 585 IGFFGVQN---FPTVGLFDG------------NFRQNLEE----------------TGMGYGLEVEMIDKAHKMGLLTTP 633 (749)
Q Consensus 585 ~Gf~GV~N---fPTvgliDG------------~fR~~LEe----------------~G~gy~~EVemi~~A~~~gl~T~~ 633 (749)
.||..+.- -|..|--.- .++..++. ..+.+ ..++-|+..-.. =+.+=
T Consensus 150 aG~~alvlTvD~p~~g~R~~d~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~lr~~~~~-PvivK 227 (351)
T cd04737 150 AGAKAIILTADATVGGNREADIRNKFQFPFGMPNLNHFSEGTGKGKGISEIYAAAKQKLSP-ADIEFIAKISGL-PVIVK 227 (351)
T ss_pred cCCCEEEEecCCCCCCcchHHHHhcCCCCcccchhhhhccccccCcchhhhhhhccCCCCH-HHHHHHHHHhCC-cEEEe
Confidence 87775532 111111111 11111111 11222 334455544321 11222
Q ss_pred cccCHHHHHHHHhccCcEEEe--ccCCCcccccccccccCHHHHHHHHHHHHHHHHHhCCCeEEEEccCCCCCHHHHHHH
Q 004491 634 YAFNEGEAVKMAKAGADIIVA--HMGLTTSGSIGAKTALSLDESVDRVQAIADAAHRINPDAIVLCHGGPISSPSEAEFI 711 (749)
Q Consensus 634 yvf~~eqa~~Ma~AGaDiiv~--h~GlT~gG~~Ga~~~~sl~~~~~~~~~i~~aa~~~~pdii~l~hGGPi~~p~d~~~~ 711 (749)
=+.++++|+...++|||.||+ |-|....+ ..+ ..+.+.+| ++.+++++-|+..|| |.+..|+...
T Consensus 228 gv~~~~dA~~a~~~G~d~I~vsnhGGr~ld~------~~~---~~~~l~~i---~~a~~~~i~vi~dGG-Ir~g~Di~ka 294 (351)
T cd04737 228 GIQSPEDADVAINAGADGIWVSNHGGRQLDG------GPA---SFDSLPEI---AEAVNHRVPIIFDSG-VRRGEHVFKA 294 (351)
T ss_pred cCCCHHHHHHHHHcCCCEEEEeCCCCccCCC------Cch---HHHHHHHH---HHHhCCCCeEEEECC-CCCHHHHHHH
Confidence 256889999999999999999 86544221 111 12233444 444566777888776 9999999888
Q ss_pred HhhCCCccEEe
Q 004491 712 LKRTKGVHGFY 722 (749)
Q Consensus 712 l~~~~~~~Gf~ 722 (749)
|. .++++-.
T Consensus 295 La--lGA~~V~ 303 (351)
T cd04737 295 LA--SGADAVA 303 (351)
T ss_pred HH--cCCCEEE
Confidence 85 4556543
No 162
>PRK12737 gatY tagatose-bisphosphate aldolase; Reviewed
Probab=91.72 E-value=1.1 Score=48.55 Aligned_cols=166 Identities=17% Similarity=0.254 Sum_probs=107.6
Q ss_pred hhhhhcCCcEEEEeccccccccCCccccccccccCchHHHHHhhhhhcCCCCCCceEEeeccCCCCCCHHHHHHHHHHcC
Q 004491 507 KFEEAGGVDLIVLYNSGRFRMAGRGSLAGLLPFADANAVVLEMANEVLPVVKEVPVLAGVCGTDPFRRVDYFLKQLESIG 586 (749)
Q Consensus 507 k~ae~gGaDli~~ynsGrfR~~G~~SlagllpygdaN~iv~e~~~eilp~v~~tPViaGv~atDP~~~~~~~l~~lk~~G 586 (749)
++||+-++.+||-..-+-++..|. ...=.++.+++++. .+||.-= .|=-.++ ..+++..+.|
T Consensus 36 ~AAee~~sPvIiq~~~~~~~~~g~---------~~~~~~~~~~a~~~-----~VPValH---LDH~~~~-e~i~~ai~~G 97 (284)
T PRK12737 36 ETAAELRSPVILAGTPGTFSYAGT---------DYIVAIAEVAARKY-----NIPLALH---LDHHEDL-DDIKKKVRAG 97 (284)
T ss_pred HHHHHhCCCEEEEcCccHHhhCCH---------HHHHHHHHHHHHHC-----CCCEEEE---CCCCCCH-HHHHHHHHcC
Confidence 578999999999887777664442 21223455566543 3576532 3444444 4566677779
Q ss_pred ccceecCCcccccchh---hhhhhhhcCCchHHHHHHHHHHHHcCCcc------c-------------ccccCHHHHHHH
Q 004491 587 FFGVQNFPTVGLFDGN---FRQNLEETGMGYGLEVEMIDKAHKMGLLT------T-------------PYAFNEGEAVKM 644 (749)
Q Consensus 587 f~GV~NfPTvgliDG~---fR~~LEe~G~gy~~EVemi~~A~~~gl~T------~-------------~yvf~~eqa~~M 644 (749)
|+.| +|||+ |-+|++.| -++.+.||+.|.-- + .+-.++|||+++
T Consensus 98 ftSV-------MiDgS~lp~eeNi~~T-------~~vv~~Ah~~gvsVEaElG~igg~e~~~~~~~~~~~~T~peeA~~F 163 (284)
T PRK12737 98 IRSV-------MIDGSHLSFEENIAIV-------KEVVEFCHRYDASVEAELGRLGGQEDDLVVDEKDAMYTNPDAAAEF 163 (284)
T ss_pred CCeE-------EecCCCCCHHHHHHHH-------HHHHHHHHHcCCEEEEEEeeccCccCCcccccccccCCCHHHHHHH
Confidence 9876 78885 44444432 34566677665421 1 224478999999
Q ss_pred H-hccCcEEEeccCCCcccccccccccCHHHHHHHHHHHHHHHHHhCCCeEEEEccCCCCCHHHHHHHHhh
Q 004491 645 A-KAGADIIVAHMGLTTSGSIGAKTALSLDESVDRVQAIADAAHRINPDAIVLCHGGPISSPSEAEFILKR 714 (749)
Q Consensus 645 a-~AGaDiiv~h~GlT~gG~~Ga~~~~sl~~~~~~~~~i~~aa~~~~pdii~l~hGGPi~~p~d~~~~l~~ 714 (749)
. +-|+|.|-+-+|-..|-..| +..+.++ ++++|.++. ++-+..|||-=...++++...+.
T Consensus 164 v~~TgvD~LAvaiGt~HG~y~~-~p~Ld~~----~L~~I~~~~-----~iPLVlHGgSG~~~e~~~kai~~ 224 (284)
T PRK12737 164 VERTGIDSLAVAIGTAHGLYKG-EPKLDFE----RLAEIREKV-----SIPLVLHGASGVPDEDVKKAISL 224 (284)
T ss_pred HHHhCCCEEeeccCccccccCC-CCcCCHH----HHHHHHHHh-----CCCEEEeCCCCCCHHHHHHHHHC
Confidence 8 58999999999987777765 3345554 677776544 45456799976677888876643
No 163
>PF01180 DHO_dh: Dihydroorotate dehydrogenase; InterPro: IPR012135 Dihydroorotate dehydrogenase (DHOD), also known as dihydroorotate oxidase, catalyses the fourth step in de novo pyrimidine biosynthesis, the stereospecific oxidation of (S)-dihydroorotate to orotate, which is the only redox reaction in this pathway. DHODs can be divided into two mains classes: class 1 cytosolic enzymes found primarily in Gram-positive bacteria, and class 2 membrane-associated enzymes found primarily in eukaryotic mitochondria and Gram-negative bacteria []. The class 1 DHODs can be further divided into subclasses 1A and 1B, which differ in their structural organisation and use of electron acceptors. The 1A enzyme is a homodimer of two PyrD subunits where each subunit forms a TIM barrel fold with a bound FMN cofactor located near the top of the barrel []. Fumarate is the natural electron acceptor for this enzyme. The 1B enzyme, in contrast is a heterotetramer composed of a central, FMN-containing, PyrD homodimer resembling the 1A homodimer, and two additional PyrK subunits which contain FAD and a 2Fe-2S cluster []. These additional groups allow the enzyme to use NAD(+) as its natural electron acceptor. The class 2 membrane-associated enzymes are monomers which have the FMN-containing TIM barrel domain found in the class 1 PyrD subunit, and an additional N-terminal alpha helical domain [, ]. These enzymes use respiratory quinones as the physiological electron acceptor. This entry represents the FMN-binding subunit common to all classes of dihydroorotate dehydrogenase.; GO: 0004152 dihydroorotate dehydrogenase activity, 0006222 UMP biosynthetic process, 0055114 oxidation-reduction process; PDB: 3GYE_A 3GZ3_A 3MHU_B 3MJY_A 3TQ0_A 2B4G_C 1EP3_A 1EP2_A 1EP1_A 3I6R_A ....
Probab=91.69 E-value=0.65 Score=49.62 Aligned_cols=173 Identities=18% Similarity=0.245 Sum_probs=102.0
Q ss_pred HHHHHHHHHHHhhc-----CCCeEEeccccc-----hhhhhhhh--cCCcEEEEeccccccccCCccccccccccCchHH
Q 004491 478 TQAILSKLKYQIDK-----GLPIIGAGAGTG-----ISAKFEEA--GGVDLIVLYNSGRFRMAGRGSLAGLLPFADANAV 545 (749)
Q Consensus 478 r~~il~~L~~~i~~-----~~piig~gaGtG-----lsAk~ae~--gGaDli~~ynsGrfR~~G~~SlagllpygdaN~i 545 (749)
-+.+++++++..++ ..||+..-.|.. =.++++++ .|||.|=+ |-.-= -..+.-++++.=+.
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~pvi~Si~~~~~~~~~d~~~~a~~~~~~ad~lEl-N~ScP------n~~~~~~~~~~~~~ 149 (295)
T PF01180_consen 77 LEYYLERLRPILKEAKKDVDIPVIASINGDSEEEIEDWAELAKRLEAGADALEL-NLSCP------NVPGGRPFGQDPEL 149 (295)
T ss_dssp HHHHHHHHHHTHHHTTCH-CEEEEEEE-TSSSGHHHHHHHHHHHHHHHCSEEEE-ESTST------TSTTSGGGGGHHHH
T ss_pred HHHHHHHHHHHhhhcccccceeEEEEeecCCchhHHHHHHHHHHhcCcCCceEE-Eeecc------CCCCccccccCHHH
Confidence 35567777666655 568887777765 22333333 88997654 31110 01122234444445
Q ss_pred HHHhhhhhcCCCCCCceEEeeccCCCCCCHHHHHHHHHHcCccceec---CCcccccchhhhhhhhhcCCc-h------H
Q 004491 546 VLEMANEVLPVVKEVPVLAGVCGTDPFRRVDYFLKQLESIGFFGVQN---FPTVGLFDGNFRQNLEETGMG-Y------G 615 (749)
Q Consensus 546 v~e~~~eilp~v~~tPViaGv~atDP~~~~~~~l~~lk~~Gf~GV~N---fPTvgliDG~fR~~LEe~G~g-y------~ 615 (749)
+.++.+.+--. .++||+.=+...-+.......+.++.+.|+.||+= ++..-.||-+-++-+...|.| + .
T Consensus 150 ~~~i~~~v~~~-~~~Pv~vKL~p~~~~~~~~~~~~~~~~~g~~gi~~~Nt~~~~~~id~~~~~~~~~~~~gGlSG~~i~p 228 (295)
T PF01180_consen 150 VAEIVRAVREA-VDIPVFVKLSPNFTDIEPFAIAAELAADGADGIVAINTFGQGDAIDLETRRPVLGNGFGGLSGPAIRP 228 (295)
T ss_dssp HHHHHHHHHHH-HSSEEEEEE-STSSCHHHHHHHHHHHTHTECEEEE---EEEEE-EETTTTEESSSGGEEEEEEGGGHH
T ss_pred HHHHHHHHHhc-cCCCEEEEecCCCCchHHHHHHHHhhccceeEEEEecCccCcccccchhcceeeccccCCcCchhhhh
Confidence 55554333222 27899998877444445566788888999999983 333333666555554443444 2 3
Q ss_pred HHHHHHHHHHHc-----CCcccccccCHHHHHHHHhccCcEEEeccCC
Q 004491 616 LEVEMIDKAHKM-----GLLTTPYAFNEGEAVKMAKAGADIIVAHMGL 658 (749)
Q Consensus 616 ~EVemi~~A~~~-----gl~T~~yvf~~eqa~~Ma~AGaDiiv~h~Gl 658 (749)
.=++.+++.+++ .+.-+.=|+|.++|.+|..||||.+=++-++
T Consensus 229 ~aL~~V~~~~~~~~~~i~Iig~GGI~s~~da~e~l~aGA~~Vqv~Sal 276 (295)
T PF01180_consen 229 IALRWVRELRKALGQDIPIIGVGGIHSGEDAIEFLMAGASAVQVCSAL 276 (295)
T ss_dssp HHHHHHHHHHHHTTTSSEEEEESS--SHHHHHHHHHHTESEEEESHHH
T ss_pred HHHHHHHHHHhccccceEEEEeCCcCCHHHHHHHHHhCCCHheechhh
Confidence 445555555543 3666788999999999999999999877555
No 164
>PRK00748 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Validated
Probab=91.68 E-value=4.4 Score=41.40 Aligned_cols=173 Identities=20% Similarity=0.285 Sum_probs=90.5
Q ss_pred hhhhhhcCCcEEEEeccccccccCCccccccccccCchHHHHHhhhhhcCCCCCCceEEeeccCCCCCCHHHHHHHHHHc
Q 004491 506 AKFEEAGGVDLIVLYNSGRFRMAGRGSLAGLLPFADANAVVLEMANEVLPVVKEVPVLAGVCGTDPFRRVDYFLKQLESI 585 (749)
Q Consensus 506 Ak~ae~gGaDli~~ynsGrfR~~G~~SlagllpygdaN~iv~e~~~eilp~v~~tPViaGv~atDP~~~~~~~l~~lk~~ 585 (749)
|+.-++.|+|.|.+.+--.+. .|+ ..| +++.+++...+ ++||++|=.- +++++. +++.+.
T Consensus 36 a~~~~~~g~~~i~v~dld~~~-~g~----------~~~---~~~i~~i~~~~-~~pv~~~GGI----~~~ed~-~~~~~~ 95 (233)
T PRK00748 36 AKAWEDQGAKWLHLVDLDGAK-AGK----------PVN---LELIEAIVKAV-DIPVQVGGGI----RSLETV-EALLDA 95 (233)
T ss_pred HHHHHHcCCCEEEEEeCCccc-cCC----------ccc---HHHHHHHHHHC-CCCEEEcCCc----CCHHHH-HHHHHc
Confidence 455556899999987752221 121 233 33444444444 5899986433 355553 677778
Q ss_pred CccceecCCcccccchhhhhhhhhcCCchHHHHHHHHHHHHc-----CC-----ccccc----ccC-HHHHHHHHhccCc
Q 004491 586 GFFGVQNFPTVGLFDGNFRQNLEETGMGYGLEVEMIDKAHKM-----GL-----LTTPY----AFN-EGEAVKMAKAGAD 650 (749)
Q Consensus 586 Gf~GV~NfPTvgliDG~fR~~LEe~G~gy~~EVemi~~A~~~-----gl-----~T~~y----vf~-~eqa~~Ma~AGaD 650 (749)
|..+|. +-+-.+-+-.+ + + ++.+...+. ++ .+-.+ -.+ .|-++++.+.|+|
T Consensus 96 Ga~~vi-lg~~~l~~~~~---l--------~--ei~~~~~~~i~vsid~k~~~v~~~g~~~~~~~~~~e~~~~~~~~g~~ 161 (233)
T PRK00748 96 GVSRVI-IGTAAVKNPEL---V--------K--EACKKFPGKIVVGLDARDGKVATDGWLETSGVTAEDLAKRFEDAGVK 161 (233)
T ss_pred CCCEEE-ECchHHhCHHH---H--------H--HHHHHhCCCceeeeeccCCEEEEccCeecCCCCHHHHHHHHHhcCCC
Confidence 988864 22222211101 1 0 111111111 11 00011 123 3446666788999
Q ss_pred EEEeccCCCcccccccccccCHHHHHHHHHHHHHHHHHhCCCeEEEEccCCCCCHHHHHHHHhhCCCccEEecCccc
Q 004491 651 IIVAHMGLTTSGSIGAKTALSLDESVDRVQAIADAAHRINPDAIVLCHGGPISSPSEAEFILKRTKGVHGFYGASSM 727 (749)
Q Consensus 651 iiv~h~GlT~gG~~Ga~~~~sl~~~~~~~~~i~~aa~~~~pdii~l~hGGPi~~p~d~~~~l~~~~~~~Gf~g~Ss~ 727 (749)
-|+.| +.+..|+. +...+ +.++++.+ ..+ +-++.+|-|.+++|++.+++. .+++|.+-|+++
T Consensus 162 ~ii~~-~~~~~g~~---~G~d~----~~i~~l~~---~~~---ipvia~GGi~~~~di~~~~~~-g~~~gv~vg~a~ 223 (233)
T PRK00748 162 AIIYT-DISRDGTL---SGPNV----EATRELAA---AVP---IPVIASGGVSSLDDIKALKGL-GAVEGVIVGRAL 223 (233)
T ss_pred EEEEe-eecCcCCc---CCCCH----HHHHHHHH---hCC---CCEEEeCCCCCHHHHHHHHHc-CCccEEEEEHHH
Confidence 77777 34443332 11222 23333322 222 335557779999999999965 669999988874
No 165
>TIGR02814 pfaD_fam PfaD family protein. The protein PfaD is part of four gene locus, similar to polyketide biosynthesis systems, responsible for omega-3 polyunsaturated fatty acid biosynthesis in several high pressure and/or cold-adapted bacteria. Several other members of the seed alignment for this model are found in loci presumed to act in polyketide biosyntheses per se.
Probab=91.68 E-value=1.1 Score=51.48 Aligned_cols=95 Identities=17% Similarity=0.175 Sum_probs=64.9
Q ss_pred HHHHHHHHcCCcccccccCHHHHHHHHhcc-CcEEEeccCCCcccccccccccCHHHHHHHHHHHHHHHHH---hCCCeE
Q 004491 619 EMIDKAHKMGLLTTPYAFNEGEAVKMAKAG-ADIIVAHMGLTTSGSIGAKTALSLDESVDRVQAIADAAHR---INPDAI 694 (749)
Q Consensus 619 emi~~A~~~gl~T~~yvf~~eqa~~Ma~AG-aDiiv~h~GlT~gG~~Ga~~~~sl~~~~~~~~~i~~aa~~---~~pdii 694 (749)
+.|++.++.|.. |+|||+...++| +|.||+. .-.||..|..... .-+..+.++.|+..+ ....|
T Consensus 158 ~~v~~L~~~G~i------t~eEA~~a~~~g~aD~Ivve--~EAGGHtg~~~~~---~Llp~i~~lrd~v~~~~~y~~~V- 225 (444)
T TIGR02814 158 HILQKLLAEGRI------TREEAELARRVPVADDICVE--ADSGGHTDNRPLV---VLLPAIIRLRDTLMRRYGYRKPI- 225 (444)
T ss_pred HHHHHHHHcCCC------CHHHHHHHHhCCCCcEEEEe--ccCCCCCCCCcHH---HHHHHHHHHHHHHhhcccCCCCc-
Confidence 456777888988 899999999999 5999995 6788887644333 222233333333321 12233
Q ss_pred EEEccCCCCCHHHHHHHHhhCCCccEEecCccc
Q 004491 695 VLCHGGPISSPSEAEFILKRTKGVHGFYGASSM 727 (749)
Q Consensus 695 ~l~hGGPi~~p~d~~~~l~~~~~~~Gf~g~Ss~ 727 (749)
-+.=.|-|.+|+++...+.- +++|-.-||-+
T Consensus 226 pViAAGGI~t~~~vaAAlaL--GAdgV~~GT~f 256 (444)
T TIGR02814 226 RVGAAGGIGTPEAAAAAFML--GADFIVTGSVN 256 (444)
T ss_pred eEEEeCCCCCHHHHHHHHHc--CCcEEEeccHH
Confidence 34445669999999999944 77899888865
No 166
>PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=91.66 E-value=4.4 Score=42.14 Aligned_cols=150 Identities=21% Similarity=0.197 Sum_probs=96.5
Q ss_pred HHHHHHHHHhhcCCCeEEeccccchh---hhhhhhcCCcEEEEeccccccccCCccccccccccCchHHHHHhhhhhcCC
Q 004491 480 AILSKLKYQIDKGLPIIGAGAGTGIS---AKFEEAGGVDLIVLYNSGRFRMAGRGSLAGLLPFADANAVVLEMANEVLPV 556 (749)
Q Consensus 480 ~il~~L~~~i~~~~piig~gaGtGls---Ak~ae~gGaDli~~ynsGrfR~~G~~SlagllpygdaN~iv~e~~~eilp~ 556 (749)
+.++.|+++... +|=+=+||||=++ ++.+.+.||+||| =-+.|.-|.+.+++
T Consensus 53 ~~i~~l~~~~~~-~p~~~vGaGTV~~~~~~~~a~~aGA~Fiv--------------------sP~~~~~v~~~~~~---- 107 (213)
T PRK06552 53 EVIKELVELYKD-DPEVLIGAGTVLDAVTARLAILAGAQFIV--------------------SPSFNRETAKICNL---- 107 (213)
T ss_pred HHHHHHHHHcCC-CCCeEEeeeeCCCHHHHHHHHHcCCCEEE--------------------CCCCCHHHHHHHHH----
Confidence 477778776532 2323355566555 5667789999999 23568889988876
Q ss_pred CCCCceEEeeccCCCCCCHHHHHHHHHHcCccceecCCcccccchhhhhhhhhcCCchHHHHHHHHHHHHcCCccccccc
Q 004491 557 VKEVPVLAGVCGTDPFRRVDYFLKQLESIGFFGVQNFPTVGLFDGNFRQNLEETGMGYGLEVEMIDKAHKMGLLTTPYAF 636 (749)
Q Consensus 557 v~~tPViaGv~atDP~~~~~~~l~~lk~~Gf~GV~NfPTvgliDG~fR~~LEe~G~gy~~EVemi~~A~~~gl~T~~yvf 636 (749)
.++|++-|++ ...+. .+..+.|+.-|.=||.- ..| .++|+..+.. +-.+|++-
T Consensus 108 -~~i~~iPG~~------T~~E~-~~A~~~Gad~vklFPa~------------~~G------~~~ik~l~~~-~p~ip~~a 160 (213)
T PRK06552 108 -YQIPYLPGCM------TVTEI-VTALEAGSEIVKLFPGS------------TLG------PSFIKAIKGP-LPQVNVMV 160 (213)
T ss_pred -cCCCEECCcC------CHHHH-HHHHHcCCCEEEECCcc------------cCC------HHHHHHHhhh-CCCCEEEE
Confidence 5788888876 23343 44568999998889921 122 3445555432 23377774
Q ss_pred ----CHHHHHHHHhccCcEEEeccCCCcccccccccccCHHHHHHHHHHHHHHH
Q 004491 637 ----NEGEAVKMAKAGADIIVAHMGLTTSGSIGAKTALSLDESVDRVQAIADAA 686 (749)
Q Consensus 637 ----~~eqa~~Ma~AGaDiiv~h~GlT~gG~~Ga~~~~sl~~~~~~~~~i~~aa 686 (749)
|++.+....++|+|.++.=-.|+..-. .-..++-.++++++.++.
T Consensus 161 tGGI~~~N~~~~l~aGa~~vavgs~l~~~~~-----~~~~~~i~~~a~~~~~~~ 209 (213)
T PRK06552 161 TGGVNLDNVKDWFAAGADAVGIGGELNKLAS-----QGDFDLITEKAKKYMSSL 209 (213)
T ss_pred ECCCCHHHHHHHHHCCCcEEEEchHHhCccc-----cCCHHHHHHHHHHHHHHH
Confidence 789999999999999998766653211 223344444445554443
No 167
>PRK08610 fructose-bisphosphate aldolase; Reviewed
Probab=91.58 E-value=8.6 Score=41.96 Aligned_cols=184 Identities=16% Similarity=0.235 Sum_probs=110.0
Q ss_pred hcCCCeEEeccccchhh----hhhhhcCCcEEEEeccccccccCCccccccccccCchHHHHHhhhhhcCCCC-CCceEE
Q 004491 490 DKGLPIIGAGAGTGISA----KFEEAGGVDLIVLYNSGRFRMAGRGSLAGLLPFADANAVVLEMANEVLPVVK-EVPVLA 564 (749)
Q Consensus 490 ~~~~piig~gaGtGlsA----k~ae~gGaDli~~ynsGrfR~~G~~SlagllpygdaN~iv~e~~~eilp~v~-~tPVia 564 (749)
++|-.|-..-.-.-.++ +.||+-++.+||-...+..+-.|. +...=.++.+++++ .+ .+||.-
T Consensus 15 ~~~yAV~AfN~~n~e~~~avi~AAee~~sPvIl~~~~~~~~~~~~--------~~~~~~~~~~~A~~----~~~~vPV~l 82 (286)
T PRK08610 15 ENGYAVGQYNLNNLEFTQAILEASQEENAPVILGVSEGAARYMSG--------FYTVVKMVEGLMHD----LNITIPVAI 82 (286)
T ss_pred HCCceEEEEEECCHHHHHHHHHHHHHHCCCEEEEcCccHHhhcCc--------HHHHHHHHHHHHHH----cCCCCCEEE
Confidence 33444444444444444 578999999999998887764331 11112334444433 22 257653
Q ss_pred eeccCCCCCCHHHHHHHHHHcCccceecCCcccccchh---hhhhhhhcCCchHHHHHHHHHHHHcCCc-----------
Q 004491 565 GVCGTDPFRRVDYFLKQLESIGFFGVQNFPTVGLFDGN---FRQNLEETGMGYGLEVEMIDKAHKMGLL----------- 630 (749)
Q Consensus 565 Gv~atDP~~~~~~~l~~lk~~Gf~GV~NfPTvgliDG~---fR~~LEe~G~gy~~EVemi~~A~~~gl~----------- 630 (749)
= .|=-.+. +.+++..+.||+.| +|||+ |-+|++.| -+..+.||.+|+.
T Consensus 83 H---LDHg~~~-e~i~~ai~~GftSV-------M~DgS~l~~eeNi~~T-------~~vve~Ah~~gv~VEaElG~vgg~ 144 (286)
T PRK08610 83 H---LDHGSSF-EKCKEAIDAGFTSV-------MIDASHSPFEENVATT-------KKVVEYAHEKGVSVEAELGTVGGQ 144 (286)
T ss_pred E---CCCCCCH-HHHHHHHHcCCCEE-------EEeCCCCCHHHHHHHH-------HHHHHHHHHcCCEEEEEEeccCCc
Confidence 3 3333344 44456677798766 78874 55555443 3456667765542
Q ss_pred ------ccccccCHHHHHHHHh-ccCcEEEeccCCCcccccccccccCHHHHHHHHHHHHHHHHHhCCCeEEEEccCCCC
Q 004491 631 ------TTPYAFNEGEAVKMAK-AGADIIVAHMGLTTSGSIGAKTALSLDESVDRVQAIADAAHRINPDAIVLCHGGPIS 703 (749)
Q Consensus 631 ------T~~yvf~~eqa~~Ma~-AGaDiiv~h~GlT~gG~~Ga~~~~sl~~~~~~~~~i~~aa~~~~pdii~l~hGGPi~ 703 (749)
.-.+-.++|||+++.+ -|+|.|-+=+|-..|--.| +..+.++ ++++|.++. ++-+..|||-=.
T Consensus 145 ed~~~~~~~~yT~peea~~Fv~~TgvD~LAvaiGt~HG~Y~~-~p~Ld~~----~L~~I~~~~-----~vPLVLHGgSG~ 214 (286)
T PRK08610 145 EDDVVADGIIYADPKECQELVEKTGIDALAPALGSVHGPYKG-EPKLGFK----EMEEIGLST-----GLPLVLHGGTGI 214 (286)
T ss_pred cCCCCCcccccCCHHHHHHHHHHHCCCEEEeeccccccccCC-CCCCCHH----HHHHHHHHH-----CCCEEEeCCCCC
Confidence 1112358899999986 5999999999877666654 2334444 666775533 455667999666
Q ss_pred CHHHHHHHHh
Q 004491 704 SPSEAEFILK 713 (749)
Q Consensus 704 ~p~d~~~~l~ 713 (749)
..++++...+
T Consensus 215 ~~e~~~~ai~ 224 (286)
T PRK08610 215 PTKDIQKAIP 224 (286)
T ss_pred CHHHHHHHHH
Confidence 6677776653
No 168
>COG0159 TrpA Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=91.49 E-value=4.7 Score=43.61 Aligned_cols=171 Identities=20% Similarity=0.270 Sum_probs=110.0
Q ss_pred HHHHHhhhhhcCCCCCCceEEeeccCCCC-CCHHHHHHHHHHcCccceecCCcccccchhhhhhhhhcCCchHHHHHHHH
Q 004491 544 AVVLEMANEVLPVVKEVPVLAGVCGTDPF-RRVDYFLKQLESIGFFGVQNFPTVGLFDGNFRQNLEETGMGYGLEVEMID 622 (749)
Q Consensus 544 ~iv~e~~~eilp~v~~tPViaGv~atDP~-~~~~~~l~~lk~~Gf~GV~NfPTvgliDG~fR~~LEe~G~gy~~EVemi~ 622 (749)
+-++||.+++-..=.++|++.=.+.+--| +-+++|++++++.|+.|+.= | .+-++..-++..
T Consensus 79 ~~~lel~~~~r~~~~~~Pivlm~Y~Npi~~~Gie~F~~~~~~~GvdGliv-p----------------DLP~ee~~~~~~ 141 (265)
T COG0159 79 EDTLELVEEIRAKGVKVPIVLMTYYNPIFNYGIEKFLRRAKEAGVDGLLV-P----------------DLPPEESDELLK 141 (265)
T ss_pred HHHHHHHHHHHhcCCCCCEEEEEeccHHHHhhHHHHHHHHHHcCCCEEEe-C----------------CCChHHHHHHHH
Confidence 45666776666454568977666666545 56999999999999999862 1 222566667788
Q ss_pred HHHHcCCccccccc---CHHHHHHHHhcc-CcEEEeccCCCcccccccccccCHHHHHHHHHHHHHHHHHhCCCeEEEEc
Q 004491 623 KAHKMGLLTTPYAF---NEGEAVKMAKAG-ADIIVAHMGLTTSGSIGAKTALSLDESVDRVQAIADAAHRINPDAIVLCH 698 (749)
Q Consensus 623 ~A~~~gl~T~~yvf---~~eqa~~Ma~AG-aDiiv~h~GlT~gG~~Ga~~~~sl~~~~~~~~~i~~aa~~~~pdii~l~h 698 (749)
.|.+.|+--+++|- +.+--++++++. --+.+.-+ -|..|++...+.. +.++.+..|+...-.+ |-
T Consensus 142 ~~~~~gi~~I~lvaPtt~~~rl~~i~~~a~GFiY~vs~----~GvTG~~~~~~~~-----~~~~v~~vr~~~~~Pv--~v 210 (265)
T COG0159 142 AAEKHGIDPIFLVAPTTPDERLKKIAEAASGFIYYVSR----MGVTGARNPVSAD-----VKELVKRVRKYTDVPV--LV 210 (265)
T ss_pred HHHHcCCcEEEEeCCCCCHHHHHHHHHhCCCcEEEEec----ccccCCCcccchh-----HHHHHHHHHHhcCCCe--EE
Confidence 88889988777774 456666666655 33443333 2333555443222 3444444555554334 44
Q ss_pred cCCCCCHHHHHHHHhhCCCccEEecCcccccchHH-------HHHHHHHHhhcc
Q 004491 699 GGPISSPSEAEFILKRTKGVHGFYGASSMERLPVE-------QAITSTMRQYKS 745 (749)
Q Consensus 699 GGPi~~p~d~~~~l~~~~~~~Gf~g~Ss~ERlP~E-------~ai~~~~~~FK~ 745 (749)
|=-|++|++++.+.+- ++|.+-||.+=++=-| +.+.+.+++.|.
T Consensus 211 GFGIs~~e~~~~v~~~---ADGVIVGSAiV~~i~~~~~~~~~~~~~~l~~~l~~ 261 (265)
T COG0159 211 GFGISSPEQAAQVAEA---ADGVIVGSAIVKIIEEGLDEEALEELRALVKELKA 261 (265)
T ss_pred ecCcCCHHHHHHHHHh---CCeEEEcHHHHHHHHhccchhhHHHHHHHHHHHHH
Confidence 6679999999999955 6999999987544333 355555666554
No 169
>COG0042 tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis]
Probab=91.43 E-value=1.4 Score=48.47 Aligned_cols=158 Identities=22% Similarity=0.241 Sum_probs=101.0
Q ss_pred CCCceEEeeccCCCCCCHHHHHHHHHHcCccce-ecC--CcccccchhhhhhhhhcCCchHHHHHHHHHHHHcC--Cccc
Q 004491 558 KEVPVLAGVCGTDPFRRVDYFLKQLESIGFFGV-QNF--PTVGLFDGNFRQNLEETGMGYGLEVEMIDKAHKMG--LLTT 632 (749)
Q Consensus 558 ~~tPViaGv~atDP~~~~~~~l~~lk~~Gf~GV-~Nf--PTvgliDG~fR~~LEe~G~gy~~EVemi~~A~~~g--l~T~ 632 (749)
.+.|+..=+++.|| -.+.+=-+.+.+.||.+| .|+ |.==...+.+...|=++ -++=.++++..++.- +..+
T Consensus 65 ~e~p~~vQl~gsdp-~~l~eaA~~~~~~g~~~IdlN~GCP~~~V~~~g~Ga~Ll~~---p~lv~~iv~a~~~av~~iPVT 140 (323)
T COG0042 65 EERPVAVQLGGSDP-ELLAEAAKIAEELGADIIDLNCGCPSPKVVKGGAGAALLKN---PELLAEIVKAMVEAVGDIPVT 140 (323)
T ss_pred CCCCEEEEecCCCH-HHHHHHHHHHHhcCCCEEeeeCCCChHHhcCCCcchhhcCC---HHHHHHHHHHHHHhhCCCCeE
Confidence 46799999999999 888888899999998877 477 76555556565555322 122233444444333 3222
Q ss_pred c-----cc---cCH-HHHHHHHhccCcEEEeccCCCcccccccccccCHHHHHHHHHHHHHHHHHhCCCeEEEEccCCCC
Q 004491 633 P-----YA---FNE-GEAVKMAKAGADIIVAHMGLTTSGSIGAKTALSLDESVDRVQAIADAAHRINPDAIVLCHGGPIS 703 (749)
Q Consensus 633 ~-----yv---f~~-eqa~~Ma~AGaDiiv~h~GlT~gG~~Ga~~~~sl~~~~~~~~~i~~aa~~~~pdii~l~hGGPi~ 703 (749)
. += ++. +=|+...++|+|.|.+|.=...-+..|- ..-+.|.+....+++ |-++--|-|.
T Consensus 141 VKiRlG~d~~~~~~~~ia~~~~~~g~~~ltVHgRtr~~~y~~~----------ad~~~I~~vk~~~~~--ipvi~NGdI~ 208 (323)
T COG0042 141 VKIRLGWDDDDILALEIARILEDAGADALTVHGRTRAQGYLGP----------ADWDYIKELKEAVPS--IPVIANGDIK 208 (323)
T ss_pred EEEecccCcccccHHHHHHHHHhcCCCEEEEecccHHhcCCCc----------cCHHHHHHHHHhCCC--CeEEeCCCcC
Confidence 1 10 223 4456667899999999965444444332 222344444444554 4445566799
Q ss_pred CHHHHHHHHhhCCCccEEecCcccccchH
Q 004491 704 SPSEAEFILKRTKGVHGFYGASSMERLPV 732 (749)
Q Consensus 704 ~p~d~~~~l~~~~~~~Gf~g~Ss~ERlP~ 732 (749)
+++|++++|++ +++||-.-|....+-|-
T Consensus 209 s~~~a~~~l~~-tg~DgVMigRga~~nP~ 236 (323)
T COG0042 209 SLEDAKEMLEY-TGADGVMIGRGALGNPW 236 (323)
T ss_pred CHHHHHHHHHh-hCCCEEEEcHHHccCCc
Confidence 99999999988 77899877766655553
No 170
>cd04722 TIM_phosphate_binding TIM barrel proteins share a structurally conserved phosphate binding motif and in general share an eight beta/alpha closed barrel structure. Specific for this family is the conserved phosphate binding site at the edges of strands 7 and 8. The phosphate comes either from the substrate, as in the case of inosine monophosphate dehydrogenase (IMPDH), or from ribulose-5-phosphate 3-epimerase (RPE) or from cofactors, like FMN.
Probab=91.13 E-value=3.6 Score=39.14 Aligned_cols=145 Identities=18% Similarity=0.126 Sum_probs=80.4
Q ss_pred HHHHHHHHhhcCCCeEEeccccch------hhhhhhhcCCcEEEEeccccccccCCccccccccccCchHHHHHhhhhhc
Q 004491 481 ILSKLKYQIDKGLPIIGAGAGTGI------SAKFEEAGGVDLIVLYNSGRFRMAGRGSLAGLLPFADANAVVLEMANEVL 554 (749)
Q Consensus 481 il~~L~~~i~~~~piig~gaGtGl------sAk~ae~gGaDli~~ynsGrfR~~G~~SlagllpygdaN~iv~e~~~eil 554 (749)
.+..+++. .+.|++.-...... .|+.+.+.|+|.|.+..+..|. =+...++.+++-
T Consensus 48 ~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~d~v~l~~~~~~~----------------~~~~~~~~~~i~ 109 (200)
T cd04722 48 VLKEVAAE--TDLPLGVQLAINDAAAAVDIAAAAARAAGADGVEIHGAVGYL----------------AREDLELIRELR 109 (200)
T ss_pred HHHHHHhh--cCCcEEEEEccCCchhhhhHHHHHHHHcCCCEEEEeccCCcH----------------HHHHHHHHHHHH
Confidence 44444443 25676654433221 1578999999999988777665 145555655555
Q ss_pred CCCCCCceEEeeccCCCCCCHHHHHHHHHHcCccceecCCcccccchhhhhhhhhcCCchHHHHHHHHHHHHcCCccccc
Q 004491 555 PVVKEVPVLAGVCGTDPFRRVDYFLKQLESIGFFGVQNFPTVGLFDGNFRQNLEETGMGYGLEVEMIDKAHKMGLLTTPY 634 (749)
Q Consensus 555 p~v~~tPViaGv~atDP~~~~~~~l~~lk~~Gf~GV~NfPTvgliDG~fR~~LEe~G~gy~~EVemi~~A~~~gl~T~~y 634 (749)
..+++.||+..+...+..... .+.+.|...|.=.+...--.+.... .. ...-+..++...+.-++...=
T Consensus 110 ~~~~~~~v~~~~~~~~~~~~~-----~~~~~g~d~i~~~~~~~~~~~~~~~---~~---~~~~~~~~~~~~~~pi~~~GG 178 (200)
T cd04722 110 EAVPDVKVVVKLSPTGELAAA-----AAEEAGVDEVGLGNGGGGGGGRDAV---PI---ADLLLILAKRGSKVPVIAGGG 178 (200)
T ss_pred HhcCCceEEEEECCCCccchh-----hHHHcCCCEEEEcCCcCCCCCccCc---hh---HHHHHHHHHhcCCCCEEEECC
Confidence 555678999998776654432 1677787766422221110110000 00 001111222222233444444
Q ss_pred ccCHHHHHHHHhccCcEEEe
Q 004491 635 AFNEGEAVKMAKAGADIIVA 654 (749)
Q Consensus 635 vf~~eqa~~Ma~AGaDiiv~ 654 (749)
+.+.+++.++.++|||.+.+
T Consensus 179 i~~~~~~~~~~~~Gad~v~v 198 (200)
T cd04722 179 INDPEDAAEALALGADGVIV 198 (200)
T ss_pred CCCHHHHHHHHHhCCCEEEe
Confidence 56679999999999999875
No 171
>TIGR01037 pyrD_sub1_fam dihydroorotate dehydrogenase (subfamily 1) family protein. This family includes subfamily 1 dihydroorotate dehydrogenases while excluding the closely related subfamily 2 (TIGR01036). This family also includes a number of uncharacterized proteins and a domain of dihydropyrimidine dehydrogenase. The uncharacterized proteins might all be dihydroorotate dehydrogenase.
Probab=90.86 E-value=2.6 Score=45.07 Aligned_cols=175 Identities=21% Similarity=0.242 Sum_probs=98.7
Q ss_pred HHHHHHHHHHHhhc-CCCeEEeccccc-----hhhhhhhhc--CCcEEEEeccccccccCCccccccccccCchHHHHHh
Q 004491 478 TQAILSKLKYQIDK-GLPIIGAGAGTG-----ISAKFEEAG--GVDLIVLYNSGRFRMAGRGSLAGLLPFADANAVVLEM 549 (749)
Q Consensus 478 r~~il~~L~~~i~~-~~piig~gaGtG-----lsAk~ae~g--GaDli~~ynsGrfR~~G~~SlagllpygdaN~iv~e~ 549 (749)
.++.+++|+...++ +.|++.--.|.= -.|+..++. ++|.|-+ |-|-=-..|+|+- |++.=+.+.|+
T Consensus 75 ~~~~~~~~~~~~~~~~~pl~~qi~g~~~~~~~~~a~~~~~~~~~~d~iel-N~~cP~~~~~g~~-----l~~~~~~~~ei 148 (300)
T TIGR01037 75 VEAFLEELKPVREEFPTPLIASVYGSSVEEFAEVAEKLEKAPPYVDAYEL-NLSCPHVKGGGIA-----IGQDPELSADV 148 (300)
T ss_pred HHHHHHHHHHHhccCCCcEEEEeecCCHHHHHHHHHHHHhccCccCEEEE-ECCCCCCCCCccc-----cccCHHHHHHH
Confidence 55667777765554 568776544421 124444433 4997765 3331111244432 33344566666
Q ss_pred hhhhcCCCCCCceEEeeccCCCCCCHHHHHHHHHHcCccceecCCcccccchhhhh--h-h-hhcCCchH------HHHH
Q 004491 550 ANEVLPVVKEVPVLAGVCGTDPFRRVDYFLKQLESIGFFGVQNFPTVGLFDGNFRQ--N-L-EETGMGYG------LEVE 619 (749)
Q Consensus 550 ~~eilp~v~~tPViaGv~atDP~~~~~~~l~~lk~~Gf~GV~NfPTvgliDG~fR~--~-L-Ee~G~gy~------~EVe 619 (749)
.++|--.+ +.||+.=+..+ +.+...+.+.+.+.|..+|.=..|+...+-..|. . + .+.| ||. .-++
T Consensus 149 v~~vr~~~-~~pv~vKi~~~--~~~~~~~a~~l~~~G~d~i~v~nt~~~~~~~~~~~~~~~~~~~g-g~sg~~~~~~~l~ 224 (300)
T TIGR01037 149 VKAVKDKT-DVPVFAKLSPN--VTDITEIAKAAEEAGADGLTLINTLRGMKIDIKTGKPILANKTG-GLSGPAIKPIALR 224 (300)
T ss_pred HHHHHHhc-CCCEEEECCCC--hhhHHHHHHHHHHcCCCEEEEEccCCccccccccCceeeCCCCc-cccchhhhHHHHH
Confidence 65554444 57888777532 2367889999999999999644343221111111 0 1 0111 222 1134
Q ss_pred HHHHHHH---cCCcccccccCHHHHHHHHhccCcEEEeccCCCccc
Q 004491 620 MIDKAHK---MGLLTTPYAFNEGEAVKMAKAGADIIVAHMGLTTSG 662 (749)
Q Consensus 620 mi~~A~~---~gl~T~~yvf~~eqa~~Ma~AGaDiiv~h~GlT~gG 662 (749)
++++.++ .-+....=+++.++|.+|.++|||.+-+-=++...+
T Consensus 225 ~v~~i~~~~~ipvi~~GGI~s~~da~~~l~~GAd~V~igr~~l~~p 270 (300)
T TIGR01037 225 MVYDVYKMVDIPIIGVGGITSFEDALEFLMAGASAVQVGTAVYYRG 270 (300)
T ss_pred HHHHHHhcCCCCEEEECCCCCHHHHHHHHHcCCCceeecHHHhcCc
Confidence 4444433 455666778999999999999999887665555444
No 172
>PRK07695 transcriptional regulator TenI; Provisional
Probab=90.79 E-value=2.1 Score=43.19 Aligned_cols=101 Identities=25% Similarity=0.260 Sum_probs=60.5
Q ss_pred CCcccccccCHHHHHHHHhccCcEEEe-ccCCCcccccccccccCHHHHHHHHHHHHHHHHHhCCCeEEEEccCCCCCHH
Q 004491 628 GLLTTPYAFNEGEAVKMAKAGADIIVA-HMGLTTSGSIGAKTALSLDESVDRVQAIADAAHRINPDAIVLCHGGPISSPS 706 (749)
Q Consensus 628 gl~T~~yvf~~eqa~~Ma~AGaDiiv~-h~GlT~gG~~Ga~~~~sl~~~~~~~~~i~~aa~~~~pdii~l~hGGPi~~p~ 706 (749)
++.--.-+.+.+|+++..++|+|.|+. |+.-|... -|. ....+ +.++++ ....+ +-|++=|| | +|+
T Consensus 95 ~~~ig~s~~s~e~a~~a~~~Gadyi~~g~v~~t~~k-~~~-~~~g~----~~l~~~---~~~~~--ipvia~GG-I-~~~ 161 (201)
T PRK07695 95 YLHVGYSVHSLEEAIQAEKNGADYVVYGHVFPTDCK-KGV-PARGL----EELSDI---ARALS--IPVIAIGG-I-TPE 161 (201)
T ss_pred CCEEEEeCCCHHHHHHHHHcCCCEEEECCCCCCCCC-CCC-CCCCH----HHHHHH---HHhCC--CCEEEEcC-C-CHH
Confidence 444445688999999988999999986 44433221 111 11222 223333 22333 44555576 5 899
Q ss_pred HHHHHHhhCCCccEEecCccccc-chHHHHHHHHHHhh
Q 004491 707 EAEFILKRTKGVHGFYGASSMER-LPVEQAITSTMRQY 743 (749)
Q Consensus 707 d~~~~l~~~~~~~Gf~g~Ss~ER-lP~E~ai~~~~~~F 743 (749)
++..+++ .+++|+..+|.+-+ -....+.++..+.|
T Consensus 162 ~~~~~~~--~Ga~gvav~s~i~~~~~p~~~~~~~~~~~ 197 (201)
T PRK07695 162 NTRDVLA--AGVSGIAVMSGIFSSANPYSKAKRYAESI 197 (201)
T ss_pred HHHHHHH--cCCCEEEEEHHHhcCCCHHHHHHHHHHHH
Confidence 9999985 56899988888864 23334444444444
No 173
>PRK02083 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=90.74 E-value=19 Score=37.80 Aligned_cols=87 Identities=15% Similarity=0.192 Sum_probs=57.5
Q ss_pred HHHHHHHHhccCcEEEeccCCCcccccccccccCHHHHHHHHHHHHHHHHHhCCCeEEEEccCCCCCHHHHHHHHhhCCC
Q 004491 638 EGEAVKMAKAGADIIVAHMGLTTSGSIGAKTALSLDESVDRVQAIADAAHRINPDAIVLCHGGPISSPSEAEFILKRTKG 717 (749)
Q Consensus 638 ~eqa~~Ma~AGaDiiv~h~GlT~gG~~Ga~~~~sl~~~~~~~~~i~~aa~~~~pdii~l~hGGPi~~p~d~~~~l~~~~~ 717 (749)
.+-++++.++|+|-|++| .+...| .++...+ +.+.++.+ .. ++- ++..|-|.+++|+..+++. ++
T Consensus 156 ~~~~~~~~~~g~~~ii~~-~i~~~g---~~~g~d~----~~i~~~~~---~~--~ip-via~GGv~s~~d~~~~~~~-~G 220 (253)
T PRK02083 156 VEWAKEVEELGAGEILLT-SMDRDG---TKNGYDL----ELTRAVSD---AV--NVP-VIASGGAGNLEHFVEAFTE-GG 220 (253)
T ss_pred HHHHHHHHHcCCCEEEEc-CCcCCC---CCCCcCH----HHHHHHHh---hC--CCC-EEEECCCCCHHHHHHHHHh-CC
Confidence 356688899999988776 222222 2233332 23333322 22 333 4445669999999999866 78
Q ss_pred ccEEecCccc--ccchHHHHHHHH
Q 004491 718 VHGFYGASSM--ERLPVEQAITST 739 (749)
Q Consensus 718 ~~Gf~g~Ss~--ERlP~E~ai~~~ 739 (749)
++|-+-+|.+ .+++.+.+....
T Consensus 221 ~~gvivg~al~~~~~~~~~~~~~~ 244 (253)
T PRK02083 221 ADAALAASIFHFGEITIGELKAYL 244 (253)
T ss_pred ccEEeEhHHHHcCCCCHHHHHHHH
Confidence 9999999994 589999876655
No 174
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=90.68 E-value=3.2 Score=40.10 Aligned_cols=86 Identities=16% Similarity=0.276 Sum_probs=56.1
Q ss_pred cCHHHH-HHHHhccCcEEEeccCCCcccccccccccCHHHHHHHHHHHHHHHHHhCC-CeEEEEccCCCCCHHHHHHHHh
Q 004491 636 FNEGEA-VKMAKAGADIIVAHMGLTTSGSIGAKTALSLDESVDRVQAIADAAHRINP-DAIVLCHGGPISSPSEAEFILK 713 (749)
Q Consensus 636 f~~eqa-~~Ma~AGaDiiv~h~GlT~gG~~Ga~~~~sl~~~~~~~~~i~~aa~~~~p-dii~l~hGGPi~~p~d~~~~l~ 713 (749)
-++|+. ++-.+.+||+||.= -......+.+.++.++.++.++ ++.+++-|.+. ++|.+. |+
T Consensus 40 ~s~e~~v~aa~e~~adii~iS--------------sl~~~~~~~~~~~~~~L~~~g~~~i~vivGG~~~--~~~~~~-l~ 102 (132)
T TIGR00640 40 QTPEEIARQAVEADVHVVGVS--------------SLAGGHLTLVPALRKELDKLGRPDILVVVGGVIP--PQDFDE-LK 102 (132)
T ss_pred CCHHHHHHHHHHcCCCEEEEc--------------CchhhhHHHHHHHHHHHHhcCCCCCEEEEeCCCC--hHhHHH-HH
Confidence 344554 55569999999872 1223456666777777777655 67777755442 345555 44
Q ss_pred hCCCccEEecCcccccchHHHHHHHHHHhh
Q 004491 714 RTKGVHGFYGASSMERLPVEQAITSTMRQY 743 (749)
Q Consensus 714 ~~~~~~Gf~g~Ss~ERlP~E~ai~~~~~~F 743 (749)
. .++++||+..| |++.-+....+..
T Consensus 103 ~-~Gvd~~~~~gt----~~~~i~~~l~~~~ 127 (132)
T TIGR00640 103 E-MGVAEIFGPGT----PIPESAIFLLKKL 127 (132)
T ss_pred H-CCCCEEECCCC----CHHHHHHHHHHHH
Confidence 5 78999999887 7777766665544
No 175
>TIGR01036 pyrD_sub2 dihydroorotate dehydrogenase, subfamily 2. The subfamilies 1 and 2 share extensive homology, particularly toward the C-terminus. This subfamily has a longer N-terminal region.
Probab=90.65 E-value=1.9 Score=47.61 Aligned_cols=166 Identities=17% Similarity=0.120 Sum_probs=99.8
Q ss_pred HHHHHHHHHHhhcCCCeEEecccc---------chhhhhhhhcC--CcEEEEeccccccccCCccccccccccCchHHHH
Q 004491 479 QAILSKLKYQIDKGLPIIGAGAGT---------GISAKFEEAGG--VDLIVLYNSGRFRMAGRGSLAGLLPFADANAVVL 547 (749)
Q Consensus 479 ~~il~~L~~~i~~~~piig~gaGt---------GlsAk~ae~gG--aDli~~ynsGrfR~~G~~SlagllpygdaN~iv~ 547 (749)
++.+++|++ -+.+.||+....+. -=.++++++.+ ||.|-+==|=.. ..| +.++..-+.+.
T Consensus 122 ~~~l~~i~~-~~~~~~i~vsi~~~~~~~~~~~~~dy~~~~~~~~~~ad~iElNlScPn-~~~-------~~~~~~~~~~~ 192 (335)
T TIGR01036 122 DVLVERLKR-ARYKGPIGINIGKNKDTPSEDAKEDYAACLRKLGPLADYLVVNVSSPN-TPG-------LRDLQYKAELR 192 (335)
T ss_pred HHHHHHHhh-ccCCCcEEEEEeCCCCCCcccCHHHHHHHHHHHhhhCCEEEEEccCCC-CCC-------cccccCHHHHH
Confidence 445666666 24467765544343 24566777777 999876212111 012 22333345555
Q ss_pred HhhhhhcCCCC------CCceEEeeccCCCCCCHHHHHHHHHHcCccceecCCcccccchhhhhhhh-hcCC-ch-----
Q 004491 548 EMANEVLPVVK------EVPVLAGVCGTDPFRRVDYFLKQLESIGFFGVQNFPTVGLFDGNFRQNLE-ETGM-GY----- 614 (749)
Q Consensus 548 e~~~eilp~v~------~tPViaGv~atDP~~~~~~~l~~lk~~Gf~GV~NfPTvgliDG~fR~~LE-e~G~-gy----- 614 (749)
+..+.|-..++ ++||+.=+...-..-++..+.+.+++.|..||.=+=|+--.+. +. ..+ .++. ||
T Consensus 193 ~i~~~V~~~~~~~~~~~~~Pv~vKLsP~~~~~~i~~ia~~~~~~GadGi~l~NT~~~~~~-~~-~~~~~~~~GGlSG~~i 270 (335)
T TIGR01036 193 DLLTAVKQEQDGLRRVHRVPVLVKIAPDLTESDLEDIADSLVELGIDGVIATNTTVSRSL-VQ-GPKNSDETGGLSGKPL 270 (335)
T ss_pred HHHHHHHHHHHhhhhccCCceEEEeCCCCCHHHHHHHHHHHHHhCCcEEEEECCCCcccc-cc-CccccCCCCcccCHHH
Confidence 55544433332 4899998875433336899999999999999986656532222 11 111 1122 22
Q ss_pred -HHHHHHHHHHHH-----cCCcccccccCHHHHHHHHhccCcEEEec
Q 004491 615 -GLEVEMIDKAHK-----MGLLTTPYAFNEGEAVKMAKAGADIIVAH 655 (749)
Q Consensus 615 -~~EVemi~~A~~-----~gl~T~~yvf~~eqa~~Ma~AGaDiiv~h 655 (749)
..=+++++..++ ..+..+.=+++.+||.++..||||.+=+.
T Consensus 271 ~p~al~~v~~~~~~~~~~ipiig~GGI~~~~da~e~l~aGA~~Vqv~ 317 (335)
T TIGR01036 271 QDKSTEIIRRLYAELQGRLPIIGVGGISSAQDALEKIRAGASLLQIY 317 (335)
T ss_pred HHHHHHHHHHHHHHhCCCCCEEEECCCCCHHHHHHHHHcCCcHHHhh
Confidence 233566766664 35777888999999999999999986544
No 176
>PRK09989 hypothetical protein; Provisional
Probab=90.62 E-value=3.6 Score=42.74 Aligned_cols=165 Identities=16% Similarity=0.122 Sum_probs=89.2
Q ss_pred CHHHHHHHHHHcCccceec-CCcccccchhhhhhhhhcCCchHHHHHHHHHH----H--HcCCcccc-----cccCHHHH
Q 004491 574 RVDYFLKQLESIGFFGVQN-FPTVGLFDGNFRQNLEETGMGYGLEVEMIDKA----H--KMGLLTTP-----YAFNEGEA 641 (749)
Q Consensus 574 ~~~~~l~~lk~~Gf~GV~N-fPTvgliDG~fR~~LEe~G~gy~~EVemi~~A----~--~~gl~T~~-----yvf~~eqa 641 (749)
++.+.++.++++||.||.= +|. ++-.-..|+.|++.|+.... +... . ..+....+ +.-+.+++
T Consensus 16 ~l~~~l~~~~~~Gfd~VEl~~~~-~~~~~~~~~~l~~~Gl~v~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 90 (258)
T PRK09989 16 PFIERFAAARKAGFDAVEFLFPY-DYSTLQIQKQLEQNHLTLAL----FNTAPGDINAGEWGLSALPGREHEARADIDLA 90 (258)
T ss_pred CHHHHHHHHHHcCCCEEEECCcc-cCCHHHHHHHHHHcCCcEEE----eccCCCccCCCCCcccCCCccHHHHHHHHHHH
Confidence 6889999999999999972 221 12234566666666653320 0000 0 00000000 00012333
Q ss_pred HHH-HhccCcEEEeccCCCcccccccccccCHHHHHHHHHHHHHHHHHhCCCeEEEEc--------cCCCCCHHHHHHHH
Q 004491 642 VKM-AKAGADIIVAHMGLTTSGSIGAKTALSLDESVDRVQAIADAAHRINPDAIVLCH--------GGPISSPSEAEFIL 712 (749)
Q Consensus 642 ~~M-a~AGaDiiv~h~GlT~gG~~Ga~~~~sl~~~~~~~~~i~~aa~~~~pdii~l~h--------GGPi~~p~d~~~~l 712 (749)
-++ .+.|++.|++|.|....+. ......+..++..+++.+.|.+.+- .+... +-.+++.+++..++
T Consensus 91 i~~A~~lg~~~v~v~~g~~~~~~---~~~~~~~~~~~~l~~l~~~a~~~gv--~l~lE~l~~~~~~~~~~~~~~~~~~ll 165 (258)
T PRK09989 91 LEYALALNCEQVHVMAGVVPAGE---DAERYRAVFIDNLRYAADRFAPHGK--RILVEALSPGVKPHYLFSSQYQALAIV 165 (258)
T ss_pred HHHHHHhCcCEEEECccCCCCCC---CHHHHHHHHHHHHHHHHHHHHhcCC--EEEEEeCCCCCCCCCccCCHHHHHHHH
Confidence 333 4889999999988754332 2223345567777777777776553 33231 34588999999999
Q ss_pred hhCCC-ccEEe---cCcccccchHHHHHHHHHHhhccccc
Q 004491 713 KRTKG-VHGFY---GASSMERLPVEQAITSTMRQYKSISI 748 (749)
Q Consensus 713 ~~~~~-~~Gf~---g~Ss~ERlP~E~ai~~~~~~FK~~~~ 748 (749)
+.+.. --|+. +.-..+.-+.+..+......++.+++
T Consensus 166 ~~v~~~~v~l~lD~~h~~~~~~~~~~~i~~~~~ri~hvHi 205 (258)
T PRK09989 166 EEVARDNVFIQLDTFHAQKVDGNLTHLIRDYAGKYAHVQI 205 (258)
T ss_pred HHcCCCCeEEEeehHhHHHcCCCHHHHHHHhhhhEEEEEE
Confidence 87532 12321 11122222566666666666655544
No 177
>cd02940 DHPD_FMN Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN, and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass the dimer interface twice. Two of the Fe-S clusters show a hitherto unobserved coordination involving a glutamine residue.
Probab=90.49 E-value=5.7 Score=42.84 Aligned_cols=162 Identities=19% Similarity=0.192 Sum_probs=97.8
Q ss_pred CCCeEEecccc------chhhhhhhhcCCcEEEEecccccc-ccCCccccccccccCchHHHHHhhhhhcCCCCCCceEE
Q 004491 492 GLPIIGAGAGT------GISAKFEEAGGVDLIVLYNSGRFR-MAGRGSLAGLLPFADANAVVLEMANEVLPVVKEVPVLA 564 (749)
Q Consensus 492 ~~piig~gaGt------GlsAk~ae~gGaDli~~ynsGrfR-~~G~~SlagllpygdaN~iv~e~~~eilp~v~~tPVia 564 (749)
.+|+++.-.|. --.|+..++.|+|.|=+ |-|--= ...++ ... .++..-+.+.++.+.+-..+ ++||+.
T Consensus 99 ~~p~i~si~G~~~~~~~~~~a~~~~~~gad~iel-N~sCP~~~~~~~-~G~--~l~~~~~~~~~iv~~v~~~~-~~Pv~v 173 (299)
T cd02940 99 DKILIASIMCEYNKEDWTELAKLVEEAGADALEL-NFSCPHGMPERG-MGA--AVGQDPELVEEICRWVREAV-KIPVIA 173 (299)
T ss_pred CCeEEEEecCCCCHHHHHHHHHHHHhcCCCEEEE-ECCCCCCCCCCC-Cch--hhccCHHHHHHHHHHHHHhc-CCCeEE
Confidence 57999988887 45677777789997664 433111 11122 111 22333466666666555444 478888
Q ss_pred eeccCCCCCCHHHHHHHHHHcCccceecCCccc---ccchhh-hhhh---hhcCC-ch------HHHHHHHHHHHH----
Q 004491 565 GVCGTDPFRRVDYFLKQLESIGFFGVQNFPTVG---LFDGNF-RQNL---EETGM-GY------GLEVEMIDKAHK---- 626 (749)
Q Consensus 565 Gv~atDP~~~~~~~l~~lk~~Gf~GV~NfPTvg---liDG~f-R~~L---Ee~G~-gy------~~EVemi~~A~~---- 626 (749)
=+... +.++..+.+.+.+.|..||.=+=|+. .||=.- +-.+ ..++. || ..=+++|++.++
T Consensus 174 Kl~~~--~~~~~~~a~~~~~~Gadgi~~~Nt~~~~~~id~~~~~~~~~~~~~~~~gg~sG~a~~p~~l~~v~~~~~~~~~ 251 (299)
T cd02940 174 KLTPN--ITDIREIARAAKEGGADGVSAINTVNSLMGVDLDGTPPAPGVEGKTTYGGYSGPAVKPIALRAVSQIARAPEP 251 (299)
T ss_pred ECCCC--chhHHHHHHHHHHcCCCEEEEecccccccccccccCCccccccCCCCcCcccCCCcchHHHHHHHHHHHhcCC
Confidence 77532 23788999999999999997332331 122111 1111 01222 22 223556666555
Q ss_pred -cCCcccccccCHHHHHHHHhccCcEEEeccCCCc
Q 004491 627 -MGLLTTPYAFNEGEAVKMAKAGADIIVAHMGLTT 660 (749)
Q Consensus 627 -~gl~T~~yvf~~eqa~~Ma~AGaDiiv~h~GlT~ 660 (749)
.-++-..=++|.++|.+|..+|||.+=+--++-.
T Consensus 252 ~ipIig~GGI~~~~da~~~l~aGA~~V~i~ta~~~ 286 (299)
T cd02940 252 GLPISGIGGIESWEDAAEFLLLGASVVQVCTAVMN 286 (299)
T ss_pred CCcEEEECCCCCHHHHHHHHHcCCChheEceeecc
Confidence 4477778899999999999999998766555443
No 178
>COG3010 NanE Putative N-acetylmannosamine-6-phosphate epimerase [Carbohydrate transport and metabolism]
Probab=90.41 E-value=1.2 Score=46.52 Aligned_cols=183 Identities=23% Similarity=0.289 Sum_probs=128.2
Q ss_pred hhhhhhhhcCCcEEEEeccccccccCCccccccccccCchHHHHHhhhhhcCCCCCCceEEe----eccCCCCCCHHHHH
Q 004491 504 ISAKFEEAGGVDLIVLYNSGRFRMAGRGSLAGLLPFADANAVVLEMANEVLPVVKEVPVLAG----VCGTDPFRRVDYFL 579 (749)
Q Consensus 504 lsAk~ae~gGaDli~~ynsGrfR~~G~~SlagllpygdaN~iv~e~~~eilp~v~~tPViaG----v~atDP~~~~~~~l 579 (749)
..|++|+.|||==| |..|. ++ -++|-+.| +.|||.= ...+|||. ..|+
T Consensus 37 ~mA~Aa~~gGAvgi--------R~~gv------------~d-----Ikai~~~v-~vPIIGIiKrd~~~s~v~I--Tptl 88 (229)
T COG3010 37 AMALAAEQGGAVGI--------RIEGV------------ED-----IKAIRAVV-DVPIIGIIKRDYPDSPVRI--TPTL 88 (229)
T ss_pred HHHHHHHhCCcceE--------eecch------------hh-----HHHHHhhC-CCCeEEEEecCCCCCCcee--cccH
Confidence 35889999998654 33221 11 13455555 5897743 34455553 4566
Q ss_pred HHHHHcCccceecCCcccccchhhhhhhhhcCCchHHHHHHHHHHHHcCCcccccccCHHHHHHHHhccCcEEEeccCCC
Q 004491 580 KQLESIGFFGVQNFPTVGLFDGNFRQNLEETGMGYGLEVEMIDKAHKMGLLTTPYAFNEGEAVKMAKAGADIIVAHMGLT 659 (749)
Q Consensus 580 ~~lk~~Gf~GV~NfPTvgliDG~fR~~LEe~G~gy~~EVemi~~A~~~gl~T~~yvf~~eqa~~Ma~AGaDiiv~h~GlT 659 (749)
+++.++==+|+ +|--+|+.+|+--.+ .. =|+++..|..|.+.|+=+-|.||+..-.++|+|+| |-|
T Consensus 89 keVd~L~~~Ga----~IIA~DaT~R~RP~~-----~~-~~~i~~~k~~~~l~MAD~St~ee~l~a~~~G~D~I----GTT 154 (229)
T COG3010 89 KEVDALAEAGA----DIIAFDATDRPRPDG-----DL-EELIARIKYPGQLAMADCSTFEEGLNAHKLGFDII----GTT 154 (229)
T ss_pred HHHHHHHHCCC----cEEEeecccCCCCcc-----hH-HHHHHHhhcCCcEEEeccCCHHHHHHHHHcCCcEE----ecc
Confidence 66666555554 578899999987643 22 26888899999999999999999999999999996 778
Q ss_pred cccccccccccCHHHHHHHHHHHHHHHHHhCCCeEEEEccCCCCCHHHHHHHHhhCCCccEEecCcccccchHHHHHHHH
Q 004491 660 TSGSIGAKTALSLDESVDRVQAIADAAHRINPDAIVLCHGGPISSPSEAEFILKRTKGVHGFYGASSMERLPVEQAITST 739 (749)
Q Consensus 660 ~gG~~Ga~~~~sl~~~~~~~~~i~~aa~~~~pdii~l~hGGPi~~p~d~~~~l~~~~~~~Gf~g~Ss~ERlP~E~ai~~~ 739 (749)
-.|-.+... ...+.-...+.+..+ .+.-|+.. |-+++|+.++..++. +++.-+-||.+=|. .+.
T Consensus 155 LsGYT~~~~-~~~~pDf~lvk~l~~------~~~~vIAE-Gr~~tP~~Ak~a~~~--Ga~aVvVGsAITRp------~~I 218 (229)
T COG3010 155 LSGYTGYTE-KPTEPDFQLVKQLSD------AGCRVIAE-GRYNTPEQAKKAIEI--GADAVVVGSAITRP------EEI 218 (229)
T ss_pred cccccCCCC-CCCCCcHHHHHHHHh------CCCeEEee-CCCCCHHHHHHHHHh--CCeEEEECcccCCH------HHH
Confidence 788777332 333333444444433 56677776 579999999999965 78999999999995 455
Q ss_pred HHhhc
Q 004491 740 MRQYK 744 (749)
Q Consensus 740 ~~~FK 744 (749)
++.|-
T Consensus 219 t~~F~ 223 (229)
T COG3010 219 TQWFV 223 (229)
T ss_pred HHHHH
Confidence 66664
No 179
>TIGR01334 modD putative molybdenum utilization protein ModD. The gene modD for a member of this family is found with molybdenum transport genes modABC in Rhodobacter capsulatus. However, disruption of modD causes only a 4-fold (rather than 500-fold for modA, modB, modC) change in the external molybdenum concentration required to suppress an alternative nitrogenase. ModD proteins are highly similar to nicotinate-nucleotide pyrophosphorylase (also called quinolinate phosphoribosyltransferase). The function unknown.
Probab=90.41 E-value=2.2 Score=46.18 Aligned_cols=197 Identities=15% Similarity=0.157 Sum_probs=109.7
Q ss_pred EeccccchhhhhhhhcCCcEEEEeccccccccCCccccccccccCchHHHHH------h----------hhhhcCCC---
Q 004491 497 GAGAGTGISAKFEEAGGVDLIVLYNSGRFRMAGRGSLAGLLPFADANAVVLE------M----------ANEVLPVV--- 557 (749)
Q Consensus 497 g~gaGtGlsAk~ae~gGaDli~~ynsGrfR~~G~~SlagllpygdaN~iv~e------~----------~~eilp~v--- 557 (749)
|+-+|+....+..++-|.-+-+.+.+|..=..|---+. -.|++..+..- + .++..-.+
T Consensus 43 gv~~G~~~~~~i~~~l~~~~~~~~~dG~~v~~g~~i~~---~~G~a~~ll~~eR~alN~l~~~SGIAT~T~~~V~~~~~~ 119 (277)
T TIGR01334 43 GIVSGVSEAAKLLKQLGASIDYAVPSGSRALAGTLLLE---AKGSAGQLHQGWKSAQSVLEWSCGVATYTHKMVTLAKKI 119 (277)
T ss_pred EEEECHHHHHHHHHHcCCEEEEEeCCCCEeCCCCEEEE---EEecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 44578888888888888888888888876655532221 13555544310 0 12333333
Q ss_pred -CCCceEEeeccCCCCCCHHHHHHHHHHcCccceecCCc-ccccch--hhhhhhhhcC--CchHHHHHHHHHHHHcCCcc
Q 004491 558 -KEVPVLAGVCGTDPFRRVDYFLKQLESIGFFGVQNFPT-VGLFDG--NFRQNLEETG--MGYGLEVEMIDKAHKMGLLT 631 (749)
Q Consensus 558 -~~tPViaGv~atDP~~~~~~~l~~lk~~Gf~GV~NfPT-vgliDG--~fR~~LEe~G--~gy~~EVemi~~A~~~gl~T 631 (749)
.++.|++= |.--..++.+...-+.-=-.+|+ .||-|. -|-+-+.-.| -++..=|+.+|+.. -+..-
T Consensus 120 ~~~~~I~~T-------RKT~Pg~R~l~k~Av~~GGg~~HR~gLsd~ilikdnHi~~~g~~~~i~~av~~~r~~~-~~~kI 191 (277)
T TIGR01334 120 SPMAVVACT-------RKAIPLTRPLAVKAVLAAGGVIHRIGLSETLLVFANHRTFLNDNFDWGGAIGRLKQTA-PERKI 191 (277)
T ss_pred CCCCEEEec-------CCCCCChhHHHHHHHHhCCCcCeecCCchhheehHHHHHHhCCcccHHHHHHHHHHhC-CCCCE
Confidence 23444442 22222222222222221112222 233333 1222233333 13444444444321 02333
Q ss_pred cccccCHHHHHHHHhccCcEEEeccCCCcccccccccccCHHHHHHHHHHHHHHHHHhCCCeEEEEccCCCCCHHHHHHH
Q 004491 632 TPYAFNEGEAVKMAKAGADIIVAHMGLTTSGSIGAKTALSLDESVDRVQAIADAAHRINPDAIVLCHGGPISSPSEAEFI 711 (749)
Q Consensus 632 ~~yvf~~eqa~~Ma~AGaDiiv~h~GlT~gG~~Ga~~~~sl~~~~~~~~~i~~aa~~~~pdii~l~hGGPi~~p~d~~~~ 711 (749)
.-=|.|.|||++.+++|||+|..| -.|.++..+.++.+ ++.+|.+++-+-|| -+++.+..+
T Consensus 192 eVEv~tleea~ea~~~GaDiI~lD-------------n~~~e~l~~~v~~l----~~~~~~~~leasGG--I~~~ni~~y 252 (277)
T TIGR01334 192 TVEADTIEQALTVLQASPDILQLD-------------KFTPQQLHHLHERL----KFFDHIPTLAAAGG--INPENIADY 252 (277)
T ss_pred EEECCCHHHHHHHHHcCcCEEEEC-------------CCCHHHHHHHHHHH----hccCCCEEEEEECC--CCHHHHHHH
Confidence 444679999999999999999999 35666665555443 45789999999999 689998888
Q ss_pred HhhCCCccEEecCc
Q 004491 712 LKRTKGVHGFYGAS 725 (749)
Q Consensus 712 l~~~~~~~Gf~g~S 725 (749)
- . +++|-+.-++
T Consensus 253 a-~-~GvD~is~ga 264 (277)
T TIGR01334 253 I-E-AGIDLFITSA 264 (277)
T ss_pred H-h-cCCCEEEeCc
Confidence 6 4 5677765554
No 180
>PRK13398 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=90.10 E-value=2.2 Score=45.83 Aligned_cols=130 Identities=18% Similarity=0.271 Sum_probs=87.5
Q ss_pred CCceEEeeccCCCCCCHHHHHHHHHHcCccceecCCcccccchhhhhh-hhhcCCchHHHHH-HHHHHHHcCCccccccc
Q 004491 559 EVPVLAGVCGTDPFRRVDYFLKQLESIGFFGVQNFPTVGLFDGNFRQN-LEETGMGYGLEVE-MIDKAHKMGLLTTPYAF 636 (749)
Q Consensus 559 ~tPViaGv~atDP~~~~~~~l~~lk~~Gf~GV~NfPTvgliDG~fR~~-LEe~G~gy~~EVe-mi~~A~~~gl~T~~yvf 636 (749)
+.-||||-|.-+-.-..-++-++||+.|+. +--++.++ =|.. ..-.|+| ++..+ +-+.+++.||..+.=+|
T Consensus 27 ~~~~iaGPCsie~~~~~~~~A~~lk~~g~~----~~r~~~~k--pRTs~~s~~G~g-~~gl~~l~~~~~~~Gl~~~te~~ 99 (266)
T PRK13398 27 EKIIIAGPCAVESEEQMVKVAEKLKELGVH----MLRGGAFK--PRTSPYSFQGLG-EEGLKILKEVGDKYNLPVVTEVM 99 (266)
T ss_pred CEEEEEeCCcCCCHHHHHHHHHHHHHcCCC----EEEEeeec--CCCCCCccCCcH-HHHHHHHHHHHHHcCCCEEEeeC
Confidence 345999999999888899999999998886 22333333 1222 2334555 33444 44557899999999999
Q ss_pred CHHHHHHHHhccCcEEEeccCCCc-----------ccccccccc--cCHHHHHHHHHHHHHHHHHhCCCeEEEEc-cC
Q 004491 637 NEGEAVKMAKAGADIIVAHMGLTT-----------SGSIGAKTA--LSLDESVDRVQAIADAAHRINPDAIVLCH-GG 700 (749)
Q Consensus 637 ~~eqa~~Ma~AGaDiiv~h~GlT~-----------gG~~Ga~~~--~sl~~~~~~~~~i~~aa~~~~pdii~l~h-GG 700 (749)
+++++..+.+. +|++-+=-...+ |--++.|+. .|++|....++.|. ..=|+++++ || |+
T Consensus 100 d~~~~~~l~~~-vd~~kIga~~~~n~~LL~~~a~~gkPV~lk~G~~~s~~e~~~A~e~i~---~~Gn~~i~L-~~rG~ 172 (266)
T PRK13398 100 DTRDVEEVADY-ADMLQIGSRNMQNFELLKEVGKTKKPILLKRGMSATLEEWLYAAEYIM---SEGNENVVL-CERGI 172 (266)
T ss_pred ChhhHHHHHHh-CCEEEECcccccCHHHHHHHhcCCCcEEEeCCCCCCHHHHHHHHHHHH---hcCCCeEEE-EECCC
Confidence 99999999999 999876444332 334445555 37887776665552 233667544 55 55
No 181
>KOG1606 consensus Stationary phase-induced protein, SOR/SNZ family [Coenzyme transport and metabolism]
Probab=90.08 E-value=1.7 Score=45.73 Aligned_cols=208 Identities=26% Similarity=0.428 Sum_probs=130.0
Q ss_pred HHHHHHhhcCCCeEEeccccchhhhhhhhcCCcEEEEecccc--ccccCCccccccccccCchHHHHHhhhhhcCCCCCC
Q 004491 483 SKLKYQIDKGLPIIGAGAGTGISAKFEEAGGVDLIVLYNSGR--FRMAGRGSLAGLLPFADANAVVLEMANEVLPVVKEV 560 (749)
Q Consensus 483 ~~L~~~i~~~~piig~gaGtGlsAk~ae~gGaDli~~ynsGr--fR~~G~~SlagllpygdaN~iv~e~~~eilp~v~~t 560 (749)
-.|-+.+ +|.-|.-+ -+---||.||++||=-++++..=. .|..|- .+ .| .| =.|-+||...|. +
T Consensus 14 ~GLAQmL-kGGvImdV--v~~eQA~iAE~aGACaVmalervPadiR~~Gg--V~-RM--sD-----P~mIKei~~aVs-i 79 (296)
T KOG1606|consen 14 VGLAQML-KGGVIMDV--VNAEQARIAEEAGACAVMALERVPADIRAQGG--VA-RM--SD-----PRMIKEIKNAVS-I 79 (296)
T ss_pred HHHHHHh-cCCeEEEe--cCHHHHHHHHhcCcceEeeeccCCHhHHhcCC--ee-ec--CC-----HHHHHHHHHhcc-c
Confidence 3444433 34444443 355679999999999998876322 332221 00 00 11 125566666664 6
Q ss_pred ceEEeeccCCCCCCHHHHHHHHHHcCccceecCCcccccchhhhhhhhhcCCchHHHHHHHHHHH-----HcCCcccccc
Q 004491 561 PVLAGVCGTDPFRRVDYFLKQLESIGFFGVQNFPTVGLFDGNFRQNLEETGMGYGLEVEMIDKAH-----KMGLLTTPYA 635 (749)
Q Consensus 561 PViaGv~atDP~~~~~~~l~~lk~~Gf~GV~NfPTvgliDG~fR~~LEe~G~gy~~EVemi~~A~-----~~gl~T~~yv 635 (749)
||.|=+ .+.+|.+ .|-||.-|.-|--|-|.|-.|- ++.=|++|||
T Consensus 80 PVMAk~-------RiGHFVE-----------------------AQIlE~l~vDYiDESEvlt~AD~~hhI~KhnFkvPFv 129 (296)
T KOG1606|consen 80 PVMAKV-------RIGHFVE-----------------------AQILEALGVDYIDESEVLTPADWDHHIEKHNFKVPFV 129 (296)
T ss_pred hhhhhh-------hhhhhhH-----------------------HHHHHHhccCccchhhhcccccccchhhhhcCcCcee
Confidence 776643 3444443 3789999999999999998885 5777999997
Q ss_pred ---cCHHHHHHHHhccCcEEEeccCCCcccccccccccCHHHHHHHHHHHH---------------HH------------
Q 004491 636 ---FNEGEAVKMAKAGADIIVAHMGLTTSGSIGAKTALSLDESVDRVQAIA---------------DA------------ 685 (749)
Q Consensus 636 ---f~~eqa~~Ma~AGaDiiv~h~GlT~gG~~Ga~~~~sl~~~~~~~~~i~---------------~a------------ 685 (749)
.|.-||.+=..-||-+|= +.|..|.. .+.|+++.+..|- .-
T Consensus 130 CG~rdlGEALRRI~EGAAMIR------tkGeagTG---~v~EaVkhvr~i~geir~~~~m~~dev~t~Ak~i~aP~dLv~ 200 (296)
T KOG1606|consen 130 CGCRDLGEALRRIREGAAMIR------TKGEAGTG---DVSEAVKHVRSINGEIRVLKNMDDDEVFTFAKEIAAPYDLVK 200 (296)
T ss_pred eccccHHHHHHHHhhchhhhe------eccccCCC---cHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHhcCcHHHHH
Confidence 578899888999998874 44555543 2344444443322 22
Q ss_pred -HHHhCCCeEEEEccCCCCCHHHHHHHHhhCCCccEEecCccccc--chH--HHHHHHHHHhhcc
Q 004491 686 -AHRINPDAIVLCHGGPISSPSEAEFILKRTKGVHGFYGASSMER--LPV--EQAITSTMRQYKS 745 (749)
Q Consensus 686 -a~~~~pdii~l~hGGPi~~p~d~~~~l~~~~~~~Gf~g~Ss~ER--lP~--E~ai~~~~~~FK~ 745 (749)
+++...=.+|-+--|-++||-|+..+++- +|+|.|-+|-+=. =|+ -+||.+.+..|..
T Consensus 201 ~t~q~GrlPVV~FAaGGvaTPADAALmMQL--GCdGVFVGSgiFks~dP~k~a~aiVqAvthy~d 263 (296)
T KOG1606|consen 201 QTKQLGRLPVVNFAAGGVATPADAALMMQL--GCDGVFVGSGIFKSGDPVKRARAIVQAVTHYDD 263 (296)
T ss_pred HHHHcCCCceEEecccCcCChhHHHHHHHc--CCCeEEeccccccCCCHHHHHHHHHHHHHccCC
Confidence 22333334566667779999999999954 7999887775421 233 3567777666643
No 182
>PRK14057 epimerase; Provisional
Probab=89.97 E-value=4.4 Score=43.55 Aligned_cols=170 Identities=18% Similarity=0.245 Sum_probs=114.9
Q ss_pred hcCCCCCCceEEeeccCCCCCCHHHHHHHHHHcCccceecCCcccccchhhhhhhhhcCCchHHHHHHHHHHHHcCCccc
Q 004491 553 VLPVVKEVPVLAGVCGTDPFRRVDYFLKQLESIGFFGVQNFPTVGLFDGNFRQNLEETGMGYGLEVEMIDKAHKMGLLTT 632 (749)
Q Consensus 553 ilp~v~~tPViaGv~atDP~~~~~~~l~~lk~~Gf~GV~NfPTvgliDG~fR~~LEe~G~gy~~EVemi~~A~~~gl~T~ 632 (749)
.+..++..|+-..+.+.|+ .++.+-+++|++.|.. |=-+=.+||+|=.|+ .+|- ..|+.|+ + ++
T Consensus 13 ~~~~~~~~~IspSil~aD~-~~L~~el~~l~~~g~d----~lHiDVMDG~FVPNi---tfGp-~~i~~i~---~----~~ 76 (254)
T PRK14057 13 CVALLASYPLSVGILAGQW-IALHRYLQQLEALNQP----LLHLDLMDGQFCPQF---TVGP-WAVGQLP---Q----TF 76 (254)
T ss_pred HHHHhcCCceEeehhhcCH-HHHHHHHHHHHHCCCC----EEEEeccCCccCCcc---ccCH-HHHHHhc---c----CC
Confidence 5566788899999999997 5788889999998843 445677889998886 2221 2445553 2 34
Q ss_pred c-----cccCHHH-HHHHHhccCcEEEeccCCCcc-----------cc----------cc----ccccc-C---------
Q 004491 633 P-----YAFNEGE-AVKMAKAGADIIVAHMGLTTS-----------GS----------IG----AKTAL-S--------- 671 (749)
Q Consensus 633 ~-----yvf~~eq-a~~Ma~AGaDiiv~h~GlT~g-----------G~----------~G----a~~~~-s--------- 671 (749)
| -|-++++ .+.+++||||+|+.|.--+.- |. .| -.|.+ .
T Consensus 77 p~DvHLMV~~P~~~i~~~~~aGad~It~H~Ea~~~~~~~l~~Ir~~G~k~~~~~~~~kaGlAlnP~Tp~e~i~~~l~~vD 156 (254)
T PRK14057 77 IKDVHLMVADQWTAAQACVKAGAHCITLQAEGDIHLHHTLSWLGQQTVPVIGGEMPVIRGISLCPATPLDVIIPILSDVE 156 (254)
T ss_pred CeeEEeeeCCHHHHHHHHHHhCCCEEEEeeccccCHHHHHHHHHHcCCCcccccccceeEEEECCCCCHHHHHHHHHhCC
Confidence 4 3556654 678899999999999984321 21 11 11111 1
Q ss_pred ----------------HHHHHHHHHHHHHHHHHhCCCeEEEEccCCCCCHHHHHHHHhhCCCccEEecCcccccchHHHH
Q 004491 672 ----------------LDESVDRVQAIADAAHRINPDAIVLCHGGPISSPSEAEFILKRTKGVHGFYGASSMERLPVEQA 735 (749)
Q Consensus 672 ----------------l~~~~~~~~~i~~aa~~~~pdii~l~hGGPi~~p~d~~~~l~~~~~~~Gf~g~Ss~ERlP~E~a 735 (749)
++++.++++++.+...+.+.++.+.+-|| -+++-+..+.+ .+++-|+.||++=+=+ -
T Consensus 157 ~VLvMtV~PGfgGQ~Fi~~~l~KI~~lr~~~~~~~~~~~IeVDGG--I~~~ti~~l~~--aGad~~V~GSalF~~~---d 229 (254)
T PRK14057 157 VIQLLAVNPGYGSKMRSSDLHERVAQLLCLLGDKREGKIIVIDGS--LTQDQLPSLIA--QGIDRVVSGSALFRDD---R 229 (254)
T ss_pred EEEEEEECCCCCchhccHHHHHHHHHHHHHHHhcCCCceEEEECC--CCHHHHHHHHH--CCCCEEEEChHhhCCC---C
Confidence 23566677777777777788999999999 78888888874 5789999999983311 1
Q ss_pred HHHHHHhhcc
Q 004491 736 ITSTMRQYKS 745 (749)
Q Consensus 736 i~~~~~~FK~ 745 (749)
+.+.++++|.
T Consensus 230 ~~~~i~~l~~ 239 (254)
T PRK14057 230 LVENTRSWRA 239 (254)
T ss_pred HHHHHHHHHH
Confidence 4444444443
No 183
>PLN02334 ribulose-phosphate 3-epimerase
Probab=89.82 E-value=17 Score=37.67 Aligned_cols=173 Identities=14% Similarity=0.187 Sum_probs=101.0
Q ss_pred hhhhhcCCcEEEEeccccccccCCccccccccccCchHHHHHhhhhhcCCCCCCceEEeeccCCCCCCHHHHHHHHHHcC
Q 004491 507 KFEEAGGVDLIVLYNSGRFRMAGRGSLAGLLPFADANAVVLEMANEVLPVVKEVPVLAGVCGTDPFRRVDYFLKQLESIG 586 (749)
Q Consensus 507 k~ae~gGaDli~~ynsGrfR~~G~~SlagllpygdaN~iv~e~~~eilp~v~~tPViaGv~atDP~~~~~~~l~~lk~~G 586 (749)
+.++++|+|+|=+ |.+.. ++...+.||. ++++++-+. .+.|+-+=+.-.|| ..|++.+.+.|
T Consensus 27 ~~~~~~g~~~ihl------d~~d~-~f~~~~~~g~------~~~~~l~~~-~~~~~~vhlmv~~p----~d~~~~~~~~g 88 (229)
T PLN02334 27 KRVLDAGADWLHV------DVMDG-HFVPNLTIGP------PVVKALRKH-TDAPLDCHLMVTNP----EDYVPDFAKAG 88 (229)
T ss_pred HHHHHcCCCEEEE------ecccC-CcCCccccCH------HHHHHHHhc-CCCcEEEEeccCCH----HHHHHHHHHcC
Confidence 4678899999975 65542 2222222221 444555444 34564444555554 55778888899
Q ss_pred ccceecCCcccccchhhhhhhhhcCCchHHHHHHHHHHHHcCCcccccccC----HHHHHHHHhcc-CcEE---EeccCC
Q 004491 587 FFGVQNFPTVGLFDGNFRQNLEETGMGYGLEVEMIDKAHKMGLLTTPYAFN----EGEAVKMAKAG-ADII---VAHMGL 658 (749)
Q Consensus 587 f~GV~NfPTvgliDG~fR~~LEe~G~gy~~EVemi~~A~~~gl~T~~yvf~----~eqa~~Ma~AG-aDii---v~h~Gl 658 (749)
..||.= ..|+ .- . +.=.+.++++++.|+. +....+ .++++...+.| +|.| .+|.|.
T Consensus 89 ad~v~v------H~~q---~~--~----d~~~~~~~~i~~~g~~-iGls~~~~t~~~~~~~~~~~~~~Dyi~~~~v~pg~ 152 (229)
T PLN02334 89 ASIFTF------HIEQ---AS--T----IHLHRLIQQIKSAGMK-AGVVLNPGTPVEAVEPVVEKGLVDMVLVMSVEPGF 152 (229)
T ss_pred CCEEEE------eecc---cc--c----hhHHHHHHHHHHCCCe-EEEEECCCCCHHHHHHHHhccCCCEEEEEEEecCC
Confidence 988831 1111 00 0 1225677888888864 444443 56667777664 9988 455443
Q ss_pred CcccccccccccCHHHHHHHHHHHHHHHHHhCCCeEEEEccCCCCCHHHHHHHHhhCCCccEEecCccccc
Q 004491 659 TTSGSIGAKTALSLDESVDRVQAIADAAHRINPDAIVLCHGGPISSPSEAEFILKRTKGVHGFYGASSMER 729 (749)
Q Consensus 659 T~gG~~Ga~~~~sl~~~~~~~~~i~~aa~~~~pdii~l~hGGPi~~p~d~~~~l~~~~~~~Gf~g~Ss~ER 729 (749)
|. ........++++++. +..+++-+.+-||= +++.+..+.+ .+++|++-+|++=+
T Consensus 153 ~~--------~~~~~~~~~~i~~~~----~~~~~~~I~a~GGI--~~e~i~~l~~--aGad~vvvgsai~~ 207 (229)
T PLN02334 153 GG--------QSFIPSMMDKVRALR----KKYPELDIEVDGGV--GPSTIDKAAE--AGANVIVAGSAVFG 207 (229)
T ss_pred Cc--------cccCHHHHHHHHHHH----HhCCCCcEEEeCCC--CHHHHHHHHH--cCCCEEEEChHHhC
Confidence 31 112234555555543 33344556677883 8999999984 47899999999744
No 184
>PRK09140 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; Reviewed
Probab=89.77 E-value=2.9 Score=43.15 Aligned_cols=105 Identities=24% Similarity=0.352 Sum_probs=76.0
Q ss_pred HHHHHHHHcCCcccccccCHHHHHHHHhccCcEEEeccCCCcccccccccccCHHHHHHHHHHHHHHHHHhC-CCeEEEE
Q 004491 619 EMIDKAHKMGLLTTPYAFNEGEAVKMAKAGADIIVAHMGLTTSGSIGAKTALSLDESVDRVQAIADAAHRIN-PDAIVLC 697 (749)
Q Consensus 619 emi~~A~~~gl~T~~yvf~~eqa~~Ma~AGaDiiv~h~GlT~gG~~Ga~~~~sl~~~~~~~~~i~~aa~~~~-pdii~l~ 697 (749)
++++.+++.|+.-+|=++|++|+.+..++|+|+|..... ....++. +++ .++.- +++-++.
T Consensus 95 ~v~~~~~~~~~~~~~G~~t~~E~~~A~~~Gad~vk~Fpa----------~~~G~~~----l~~----l~~~~~~~ipvva 156 (206)
T PRK09140 95 EVIRRAVALGMVVMPGVATPTEAFAALRAGAQALKLFPA----------SQLGPAG----IKA----LRAVLPPDVPVFA 156 (206)
T ss_pred HHHHHHHHCCCcEEcccCCHHHHHHHHHcCCCEEEECCC----------CCCCHHH----HHH----HHhhcCCCCeEEE
Confidence 567888999999999999999999999999999997321 1233222 222 23333 4788888
Q ss_pred ccCCCCCHHHHHHHHhhCCCccEEecCccccc-chHHHHHHHHHHhhcc
Q 004491 698 HGGPISSPSEAEFILKRTKGVHGFYGASSMER-LPVEQAITSTMRQYKS 745 (749)
Q Consensus 698 hGGPi~~p~d~~~~l~~~~~~~Gf~g~Ss~ER-lP~E~ai~~~~~~FK~ 745 (749)
=|| -+++++..+++. +++|.-..|.+=. -.-...+++.+++|++
T Consensus 157 iGG--I~~~n~~~~~~a--Ga~~vav~s~l~~~~~~~~~i~~~a~~~~~ 201 (206)
T PRK09140 157 VGG--VTPENLAPYLAA--GAAGFGLGSALYRPGQSAEEVAERARAFVA 201 (206)
T ss_pred ECC--CCHHHHHHHHHC--CCeEEEEehHhcccccChHHHHHHHHHHHH
Confidence 888 499999999955 7789888888732 1123568888888765
No 185
>TIGR01520 FruBisAldo_II_A fructose-bisphosphate aldolase, class II, yeast/E. coli subtype. This model represents one of two deeply split, architecturally distinct clades of the family that includes class II fructose-bisphosphate aldolases, tagatose-bisphosphate aldolases, and related uncharacterized proteins. This family is well-conserved and includes characterized FBA from Saccharomyces cerevisiae, Escherichia coli, and Corynebacterium glutamicum. Proteins outside the scope of this model may also be designated as class II fructose-bisphosphate aldolases, but are well separated in an alignment-based phylogenetic tree.
Probab=89.67 E-value=11 Score=42.49 Aligned_cols=217 Identities=15% Similarity=0.189 Sum_probs=129.6
Q ss_pred CCCcccccHHHHHHHHHHHhhcCCCeEEeccccchhh----hhhhhcCCcEEEEeccccccccCCccccccccccCc---
Q 004491 470 ARPETLQRTQAILSKLKYQIDKGLPIIGAGAGTGISA----KFEEAGGVDLIVLYNSGRFRMAGRGSLAGLLPFADA--- 542 (749)
Q Consensus 470 ~~~~~~~~r~~il~~L~~~i~~~~piig~gaGtGlsA----k~ae~gGaDli~~ynsGrfR~~G~~Slagllpygda--- 542 (749)
-|| ++.+-+++.+-|+..-++|-.|...-.-.-.++ +.||+-..++||-.+.|.++.++..-+--+.|=+++
T Consensus 5 ~~~-~~~~~~~~~~lL~~A~~~~yAVgAfNv~n~e~~~Avi~AAEe~~sPvIlq~s~~~~~~~~g~~~~~~~~~~~~~~~ 83 (357)
T TIGR01520 5 VKP-GVITGDDVHKLFQYAKENNFAIPAINCTSSSTINAALEAAADVKSPIIIQFSNGGAAFIAGKGVKDEVPQGASILG 83 (357)
T ss_pred cCC-CccCHHHHHHHHHHHHHCCceEEEEEeCCHHHHHHHHHHHHHhCCCEEEEcCcchhhhcCCcccccccchhhhhhh
Confidence 345 456778888888777777776666666555555 468999999999998888765321101111111111
Q ss_pred ----hHHHHHhhhhhcCCCCCCceEEeeccCCCCCCHH-HHHHHHHHcC-----------ccceecCCcccccchh---h
Q 004491 543 ----NAVVLEMANEVLPVVKEVPVLAGVCGTDPFRRVD-YFLKQLESIG-----------FFGVQNFPTVGLFDGN---F 603 (749)
Q Consensus 543 ----N~iv~e~~~eilp~v~~tPViaGv~atDP~~~~~-~~l~~lk~~G-----------f~GV~NfPTvgliDG~---f 603 (749)
=.++..++++. .+||.-=+ |==.+.+ .|+++..+.| |+.| +|||+ |
T Consensus 84 ~~~~~~~v~~~Ae~a-----~VPValHL---DHg~~~~~~~i~~ai~ag~~~~~~~g~~gftSV-------MiDgS~lpf 148 (357)
T TIGR01520 84 AIAGAHHVHSIAEHY-----GVPVVLHT---DHCAKKLLPWVDGLLEAGEKYFSAHGKPLFSSH-------MIDLSEEPI 148 (357)
T ss_pred HHHHHHHHHHHHHHC-----CCCEEEEC---CCCCCcchHHHHHHHHhhhhhhhhcCCCCCceE-------EeeCCCCCH
Confidence 22344455442 46775433 3222222 5677777765 6544 88986 5
Q ss_pred hhhhhhcCCchHHHHHHHHHHHHcCCcc-----------------c----ccccCHHHHHHHHhc-----cCcEEEeccC
Q 004491 604 RQNLEETGMGYGLEVEMIDKAHKMGLLT-----------------T----PYAFNEGEAVKMAKA-----GADIIVAHMG 657 (749)
Q Consensus 604 R~~LEe~G~gy~~EVemi~~A~~~gl~T-----------------~----~yvf~~eqa~~Ma~A-----GaDiiv~h~G 657 (749)
-+|++.| -|..+.||..|+.. . .+-.++|||+++.+. |+|.|-+=+|
T Consensus 149 eENI~~T-------revVe~Ah~~GvsVEaELG~vgG~Ed~~~~~~~~~~~~yTdPeeA~~Fv~~t~~~TgvD~LAvAiG 221 (357)
T TIGR01520 149 EENIEIC-------VKYLKRMAKIKMWLEIEIGITGGEEDGVDNSHMDAEALYTQPEDVYYAYEELSKISPNFSIAAAFG 221 (357)
T ss_pred HHHHHHH-------HHHHHHHHHcCCEEEEEecccCCccCCcccccccccccCCCHHHHHHHHHHhccCCCcceeeeeec
Confidence 6666543 34455566665421 1 345689999999863 9999999998
Q ss_pred CCcccccccccccCHHHHHHHHHHHHHHHHH-hC-C---CeEEEEccCCCCCHHHHHHHHh
Q 004491 658 LTTSGSIGAKTALSLDESVDRVQAIADAAHR-IN-P---DAIVLCHGGPISSPSEAEFILK 713 (749)
Q Consensus 658 lT~gG~~Ga~~~~sl~~~~~~~~~i~~aa~~-~~-p---dii~l~hGGPi~~p~d~~~~l~ 713 (749)
-..|-....+..+.++ ++++|.+..++ ++ | .+-+..|||-=...++++...+
T Consensus 222 T~HG~Yk~~~p~Ld~d----~L~~I~~~~~~~~~vP~~~~~pLVLHGgSGi~~e~i~kai~ 278 (357)
T TIGR01520 222 NVHGVYKPGNVKLTPD----ILADGQEYVSEKLGLPAAKPLFFVFHGGSGSTKQEIKEALS 278 (357)
T ss_pred cccCCcCCCCCccCHH----HHHHHHHHHHHhcCCCcCCCCcEEEeCCCCCCHHHHHHHHH
Confidence 7766553112334443 56666544322 21 1 2336679997777788877664
No 186
>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]
Probab=89.46 E-value=3 Score=41.30 Aligned_cols=92 Identities=20% Similarity=0.330 Sum_probs=64.1
Q ss_pred ccccCHHHHHHHH-hccCcEEEeccCCCcccccccccccCHHHHHHHHHHHHHHHHHhCCCeEEEEccCCCCCHHHHHHH
Q 004491 633 PYAFNEGEAVKMA-KAGADIIVAHMGLTTSGSIGAKTALSLDESVDRVQAIADAAHRINPDAIVLCHGGPISSPSEAEFI 711 (749)
Q Consensus 633 ~yvf~~eqa~~Ma-~AGaDiiv~h~GlT~gG~~Ga~~~~sl~~~~~~~~~i~~aa~~~~pdii~l~hGGPi~~p~d~~~~ 711 (749)
+-.-+++|+.+.+ +-.+|+|++- ++ -..-...+.++.+++++...+-|.+. +|++-.|+|.+++
T Consensus 47 g~~~tp~e~v~aA~~~dv~vIgvS-sl-------------~g~h~~l~~~lve~lre~G~~~i~v~-~GGvip~~d~~~l 111 (143)
T COG2185 47 GLFQTPEEAVRAAVEEDVDVIGVS-SL-------------DGGHLTLVPGLVEALREAGVEDILVV-VGGVIPPGDYQEL 111 (143)
T ss_pred CCcCCHHHHHHHHHhcCCCEEEEE-ec-------------cchHHHHHHHHHHHHHHhCCcceEEe-ecCccCchhHHHH
Confidence 3334447776665 9999998762 11 11234567788888898877766644 4455567888887
Q ss_pred HhhCCCccEEecCcccccchHHHHHHHHHHhhcc
Q 004491 712 LKRTKGVHGFYGASSMERLPVEQAITSTMRQYKS 745 (749)
Q Consensus 712 l~~~~~~~Gf~g~Ss~ERlP~E~ai~~~~~~FK~ 745 (749)
.++ +++++|+. ..|++.++.+..+++..
T Consensus 112 ~~~--G~~~if~p----gt~~~~~~~~v~~~l~~ 139 (143)
T COG2185 112 KEM--GVDRIFGP----GTPIEEALSDLLTRLGA 139 (143)
T ss_pred HHh--CcceeeCC----CCCHHHHHHHHHHHHHh
Confidence 655 78999998 57999999988877654
No 187
>cd04734 OYE_like_3_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 3. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. One member of this subgroup, the Sinorhizobium meliloti stachydrine utilization protein stcD, has been idenified as a putative N-methylproline demethylase.
Probab=89.44 E-value=39 Score=37.46 Aligned_cols=80 Identities=21% Similarity=0.158 Sum_probs=46.0
Q ss_pred HHHHHhcc-CcEEEeccCCCcccc-----cc---cccccCHHHHHHHHHHHHHHHHHhCCCeEEEEccCCCCCHHHHHHH
Q 004491 641 AVKMAKAG-ADIIVAHMGLTTSGS-----IG---AKTALSLDESVDRVQAIADAAHRINPDAIVLCHGGPISSPSEAEFI 711 (749)
Q Consensus 641 a~~Ma~AG-aDiiv~h~GlT~gG~-----~G---a~~~~sl~~~~~~~~~i~~aa~~~~pdii~l~hGGPi~~p~d~~~~ 711 (749)
++.+.++| +|.|.+|.|.+..-. .. .+.... .+.+++|.++. ++.|++ .|-|.+|++++.+
T Consensus 234 ~~~l~~~G~vd~i~vs~g~~~~~~~~~~~~~~~~~~~~~~----~~~~~~ik~~~-----~ipvi~-~G~i~~~~~~~~~ 303 (343)
T cd04734 234 AARLAAEGLIDYVNVSAGSYYTLLGLAHVVPSMGMPPGPF----LPLAARIKQAV-----DLPVFH-AGRIRDPAEAEQA 303 (343)
T ss_pred HHHHHhcCCCCEEEeCCCCCCcccccccccCCCCCCcchh----HHHHHHHHHHc-----CCCEEe-eCCCCCHHHHHHH
Confidence 56677898 899999988654210 00 011111 22233333222 344444 4669999999999
Q ss_pred HhhCCCccEEecCcccccch
Q 004491 712 LKRTKGVHGFYGASSMERLP 731 (749)
Q Consensus 712 l~~~~~~~Gf~g~Ss~ERlP 731 (749)
++. ..+|+.-=+-.+-.=|
T Consensus 304 l~~-~~~D~V~~gR~~ladP 322 (343)
T cd04734 304 LAA-GHADMVGMTRAHIADP 322 (343)
T ss_pred HHc-CCCCeeeecHHhHhCc
Confidence 976 5678766555444333
No 188
>PRK05458 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=89.20 E-value=1.5 Score=48.41 Aligned_cols=144 Identities=15% Similarity=0.138 Sum_probs=77.9
Q ss_pred ceEEeeccCCCCCCHHHHHHHHHHcCc--cceecCCcccccchhhhhhhhhcCCchHHHHHHHHHHHHcCCcccc-cccC
Q 004491 561 PVLAGVCGTDPFRRVDYFLKQLESIGF--FGVQNFPTVGLFDGNFRQNLEETGMGYGLEVEMIDKAHKMGLLTTP-YAFN 637 (749)
Q Consensus 561 PViaGv~atDP~~~~~~~l~~lk~~Gf--~GV~NfPTvgliDG~fR~~LEe~G~gy~~EVemi~~A~~~gl~T~~-yvf~ 637 (749)
.+++|++..= ..+..+..++|.+.|. .-|+=-.|- |+-....| . |+.|+..- -+.+-++ =|-|
T Consensus 85 ~l~v~~~vg~-~~~~~~~~~~Lv~ag~~~d~i~iD~a~----gh~~~~~e-~-------I~~ir~~~-p~~~vi~g~V~t 150 (326)
T PRK05458 85 GLIASISVGV-KDDEYDFVDQLAAEGLTPEYITIDIAH----GHSDSVIN-M-------IQHIKKHL-PETFVIAGNVGT 150 (326)
T ss_pred ccEEEEEecC-CHHHHHHHHHHHhcCCCCCEEEEECCC----CchHHHHH-H-------HHHHHhhC-CCCeEEEEecCC
Confidence 4466655431 2245577888888865 433322222 22222211 1 44444321 2355455 5779
Q ss_pred HHHHHHHHhccCcEEEeccCCCcccccccc---cccCHHHHHHHHHHHHHHHHHhCCCeEEEEccCCCCCHHHHHHHHhh
Q 004491 638 EGEAVKMAKAGADIIVAHMGLTTSGSIGAK---TALSLDESVDRVQAIADAAHRINPDAIVLCHGGPISSPSEAEFILKR 714 (749)
Q Consensus 638 ~eqa~~Ma~AGaDiiv~h~GlT~gG~~Ga~---~~~sl~~~~~~~~~i~~aa~~~~pdii~l~hGGPi~~p~d~~~~l~~ 714 (749)
.|+|+.+.++|||+|.+|.| +|++-.. +.....+- .+..+.+.++..+ +-+++.|| |.+|.|+...|..
T Consensus 151 ~e~a~~l~~aGad~i~vg~~---~G~~~~t~~~~g~~~~~w--~l~ai~~~~~~~~--ipVIAdGG-I~~~~Di~KaLa~ 222 (326)
T PRK05458 151 PEAVRELENAGADATKVGIG---PGKVCITKIKTGFGTGGW--QLAALRWCAKAAR--KPIIADGG-IRTHGDIAKSIRF 222 (326)
T ss_pred HHHHHHHHHcCcCEEEECCC---CCcccccccccCCCCCcc--HHHHHHHHHHHcC--CCEEEeCC-CCCHHHHHHHHHh
Confidence 99999999999999988866 4433100 01110000 1112222222222 44666665 9999999999955
Q ss_pred CCCccEEecCcccc
Q 004491 715 TKGVHGFYGASSME 728 (749)
Q Consensus 715 ~~~~~Gf~g~Ss~E 728 (749)
+++...-++.|-
T Consensus 223 --GA~aV~vG~~~~ 234 (326)
T PRK05458 223 --GATMVMIGSLFA 234 (326)
T ss_pred --CCCEEEechhhc
Confidence 667766666653
No 189
>PRK09920 acetyl-CoA:acetoacetyl-CoA transferase subunit alpha; Provisional
Probab=89.11 E-value=2.3 Score=44.61 Aligned_cols=127 Identities=16% Similarity=0.181 Sum_probs=88.4
Q ss_pred CCCcEEEEeccCCc-hHHHHHHHHHHHhcCccEEEEe-cCCCchHHHHHHHHcCCceEEEeCc---hhhhhhhhhCCccC
Q 004491 207 KEKCTVGITMFGVT-TPCVNAVKERLEKEGYETMVFH-ATGVGGRAMEALVKEGFIQGVLDIT---TTEVADYVVGGVMA 281 (749)
Q Consensus 207 ~~kp~IgiTMFGvT-Tp~V~~~r~~Le~~GyEvlVFH-ATG~GGrAME~Li~eG~~~gVlDlT---ttElaD~l~GGv~s 281 (749)
.+.-+|++.-||.. +| ..-+++.+++.-.+-.++| ++|.+|+-++.|+.+|++.-++==- ..++.+.+..|-+.
T Consensus 16 ~DG~ti~~gGf~~~~~P-~ali~al~r~~~~dLtli~~~~g~~~~g~~~L~~~G~Vkr~i~s~~g~~p~~~~~~~~g~ie 94 (219)
T PRK09920 16 RDGMTIMVGGFMGIGTP-SRLVEALLESGVRDLTLIANDTAFVDTGIGPLIVNGRVKKVIASHIGTNPETGRRMISGEMD 94 (219)
T ss_pred CCCCEEEECcccCcCCH-HHHHHHHHhcCCCceEEEEeCCCCCCcchhhHhhCCCEeEEEeccccCCHHHHHHHHcCCeE
Confidence 45668999999753 35 4445554444326777777 8888889999999999998765311 12555555555332
Q ss_pred C-------CCchhhhhhhcCCCeEEecCccccccCCCCCCCCccccCCcee---eecCcceEEecC
Q 004491 282 C-------DSSRFDATIEKKIPLVLSVGALDMVNFGAKDTIPSKFQRRKIH---VHNQQVSLMRTT 337 (749)
Q Consensus 282 a-------Gp~RL~AA~~~GIPqVVspGalDmVnFG~~dtvPe~f~~R~~~---~HNp~vTlmRTt 337 (749)
. --+||+|+ -+|+|-+..+.++.-.--+.++++| |.++.+. --+|.|+++|-+
T Consensus 95 ~~~~pqg~l~~~lRA~-a~G~Pg~~t~~glGT~v~~gk~~~~--~~G~~~l~~~a~~~DvAlI~a~ 157 (219)
T PRK09920 95 VELVPQGTLIEQIRCG-GAGLGGFLTPTGVGTVVEEGKQTLT--LDGKTWLLERPLRADLALIRAH 157 (219)
T ss_pred EEECCHHHHHHHHHHH-HCCCCceeeccccCccccCCCceeE--ECCeEEEEEecCCCcEEEEEec
Confidence 2 12588887 5799999999988744347777764 8999754 457899999955
No 190
>TIGR02311 HpaI 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase. This model represents the aldolase which performs the final step unique to the 4-hydroxyphenylacetic acid catabolism pathway in which 2,4-dihydroxyhept-2-ene-1,7-dioic acid is split into pyruvate and succinate-semialdehyde. The gene for enzyme is generally found adjacent to other genes for this pathway organized into an operon.
Probab=88.81 E-value=9.1 Score=40.58 Aligned_cols=37 Identities=24% Similarity=0.469 Sum_probs=30.2
Q ss_pred HHHHHhhcCCCeEEe--ccccchhhhhhhhcCCcEEEEe
Q 004491 484 KLKYQIDKGLPIIGA--GAGTGISAKFEEAGGVDLIVLY 520 (749)
Q Consensus 484 ~L~~~i~~~~piig~--gaGtGlsAk~ae~gGaDli~~y 520 (749)
+||+++++|+|++|. ...+...+..+...|.|+|++-
T Consensus 2 ~lk~~l~~g~~~~g~~~~~~~p~~~e~~~~~g~D~v~iD 40 (249)
T TIGR02311 2 QFKQALKEGQPQIGLWLGLADPYAAEICAGAGFDWLLID 40 (249)
T ss_pred hHHHHHHCCCceEEEEEeCCCcHHHHHHHhcCCCEEEEe
Confidence 589999999999995 4556667777788899999974
No 191
>PF00478 IMPDH: IMP dehydrogenase / GMP reductase domain; InterPro: IPR001093 Synonym(s): Inosine-5'-monophosphate dehydrogenase, Inosinic acid dehydrogenase; Synonym(s): Guanosine 5'-monophosphate oxidoreductase This entry contains two related enzymes IMP dehydrogenase and GMP reducatase. These enzymes adopt a TIM barrel structure. IMP dehydrogenase (1.1.1.205 from EC) (IMPDH) catalyzes the rate-limiting reaction of de novo GTP biosynthesis, the NAD-dependent reduction of IMP into XMP []. Inosine 5-phosphate + NAD+ + H2O = xanthosine 5-phosphate + NADH IMP dehydrogenase is associated with cell proliferation and is a possible target for cancer chemotherapy. Mammalian and bacterial IMPDHs are tetramers of identical chains. There are two IMP dehydrogenase isozymes in humans []. IMP dehydrogenase nearly always contains a long insertion that has two CBS domains within it. GMP reductase (1.7.1.7 from EC) catalyzes the irreversible and NADPH-dependent reductive deamination of GMP into IMP []. NADPH + guanosine 5-phosphate = NADP+ + inosine 5-phosphate + NH3 It converts nucleobase, nucleoside and nucleotide derivatives of G to A nucleotides, and maintains intracellular balance of A and G nucleotides.; GO: 0003824 catalytic activity, 0055114 oxidation-reduction process; PDB: 3FFS_D 1VRD_A 1JCN_B 1EEP_B 3TSB_B 3USB_B 3TSD_A 4FF0_A 4FEZ_A 3KHJ_D ....
Probab=88.79 E-value=5.2 Score=44.88 Aligned_cols=125 Identities=19% Similarity=0.266 Sum_probs=77.5
Q ss_pred CCceEEeeccCCCCCCHHHHHHHHHHcCccceecCCcccccchhhhhhhhhcCCchHHHHHHHHHHHH----------cC
Q 004491 559 EVPVLAGVCGTDPFRRVDYFLKQLESIGFFGVQNFPTVGLFDGNFRQNLEETGMGYGLEVEMIDKAHK----------MG 628 (749)
Q Consensus 559 ~tPViaGv~atDP~~~~~~~l~~lk~~Gf~GV~NfPTvgliDG~fR~~LEe~G~gy~~EVemi~~A~~----------~g 628 (749)
++|+++-- -| +.--.++-..|-+.|.-||.+-= +.++..++++++.++ ..
T Consensus 37 ~iPivsa~--MD-tVte~~mAiama~~Gglgvih~~-----------------~~~e~q~~~v~~vK~~~~~a~~d~~~~ 96 (352)
T PF00478_consen 37 KIPIVSAP--MD-TVTESEMAIAMARLGGLGVIHRN-----------------MSIEEQAEEVKKVKRYYPNASKDEKGR 96 (352)
T ss_dssp SSSEEE-S--ST-TTSSHHHHHHHHHTTSEEEEESS-----------------SCHHHHHHHHHHHHTHHTTHHBHTTSC
T ss_pred cCceEecC--cc-ccchHHHHHHHHHhcCCceecCC-----------------CCHHHHHHHHhhhcccccccccccccc
Confidence 58888743 22 22233566677778888887642 346666777766553 34
Q ss_pred Cccccccc----CHHHHHHHHhccCcEEEeccCCCcccccccccccCHHHHHHHHHHHHHHHHHhCCCeEEEEccCCCCC
Q 004491 629 LLTTPYAF----NEGEAVKMAKAGADIIVAHMGLTTSGSIGAKTALSLDESVDRVQAIADAAHRINPDAIVLCHGGPISS 704 (749)
Q Consensus 629 l~T~~yvf----~~eqa~~Ma~AGaDiiv~h~GlT~gG~~Ga~~~~sl~~~~~~~~~i~~aa~~~~pdii~l~hGGPi~~ 704 (749)
++.-+-|= +.|-++++.+||+|+||+..- .|. -+..++. .+..++.-|++.|+ +|.|+|
T Consensus 97 l~V~aavg~~~~~~er~~~L~~agvD~ivID~a------~g~-----s~~~~~~----ik~ik~~~~~~~vi--aGNV~T 159 (352)
T PF00478_consen 97 LLVAAAVGTRDDDFERAEALVEAGVDVIVIDSA------HGH-----SEHVIDM----IKKIKKKFPDVPVI--AGNVVT 159 (352)
T ss_dssp BCEEEEEESSTCHHHHHHHHHHTT-SEEEEE-S------STT-----SHHHHHH----HHHHHHHSTTSEEE--EEEE-S
T ss_pred ceEEEEecCCHHHHHHHHHHHHcCCCEEEcccc------Ccc-----HHHHHHH----HHHHHHhCCCceEE--ecccCC
Confidence 44444442 257888999999999999732 121 1223333 33446667788888 789999
Q ss_pred HHHHHHHHhhCCCccEEe
Q 004491 705 PSEAEFILKRTKGVHGFY 722 (749)
Q Consensus 705 p~d~~~~l~~~~~~~Gf~ 722 (749)
++-++++++ .++|+.-
T Consensus 160 ~e~a~~L~~--aGad~vk 175 (352)
T PF00478_consen 160 YEGAKDLID--AGADAVK 175 (352)
T ss_dssp HHHHHHHHH--TT-SEEE
T ss_pred HHHHHHHHH--cCCCEEE
Confidence 999999985 4677763
No 192
>TIGR00875 fsa_talC_mipB fructose-6-phosphate aldolase, TalC/MipB family. This model represents a family that includes the E. coli transaldolase homologs TalC and MipB, both shown to be fructose-6-phosphate aldolases rather than transaldolases as previously thought. It is related to but distinct from the transaldolase family of E. coli TalA and TalB. The member from Bacillus subtilis becomes phosphorylated during early stationary phase but not during exponential growth.
Probab=88.79 E-value=1.3 Score=46.04 Aligned_cols=114 Identities=14% Similarity=0.211 Sum_probs=82.1
Q ss_pred HHHHHHHHHcCCcccc-cccCHHHHHHHHhccCcEEEeccCCCcccccccccccCHHHHHHHHHHHHHHHHHhCCCeEEE
Q 004491 618 VEMIDKAHKMGLLTTP-YAFNEGEAVKMAKAGADIIVAHMGLTTSGSIGAKTALSLDESVDRVQAIADAAHRINPDAIVL 696 (749)
Q Consensus 618 Vemi~~A~~~gl~T~~-yvf~~eqa~~Ma~AGaDiiv~h~GlT~gG~~Ga~~~~sl~~~~~~~~~i~~aa~~~~pdii~l 696 (749)
++.++.-++.|+-+.. -||+.+||..-++||||.|.+.+|.-.- .-.+.++.++++.+..+..+++.-+|
T Consensus 91 l~A~~~L~~~Gi~v~~T~vfs~~Qa~~Aa~aGa~yispyvgRi~d---------~g~dg~~~v~~~~~~~~~~~~~tkIl 161 (213)
T TIGR00875 91 LKAVKILKKEGIKTNVTLVFSAAQALLAAKAGATYVSPFVGRLDD---------IGGDGMKLIEEVKTIFENHAPDTEVI 161 (213)
T ss_pred HHHHHHHHHCCCceeEEEecCHHHHHHHHHcCCCEEEeecchHHH---------cCCCHHHHHHHHHHHHHHcCCCCEEE
Confidence 6788888888987764 4999999999999999999999996421 12457888888888888888888888
Q ss_pred EccCCCCCHHHHHHHHhhCCCccEE-ecCcc----cccchHHHHHHHHHHhhc
Q 004491 697 CHGGPISSPSEAEFILKRTKGVHGF-YGASS----MERLPVEQAITSTMRQYK 744 (749)
Q Consensus 697 ~hGGPi~~p~d~~~~l~~~~~~~Gf-~g~Ss----~ERlP~E~ai~~~~~~FK 744 (749)
+.-+.+++++...+. .|||-. +...- ++.=.++.++.+--+.|+
T Consensus 162 --aAS~r~~~~v~~~~~--~G~d~vTip~~vl~~l~~~p~t~~~~~~F~~d~~ 210 (213)
T TIGR00875 162 --AASVRHPRHVLEAAL--IGADIATMPLDVMQQLFNHPLTDIGLERFLKDWN 210 (213)
T ss_pred --EeccCCHHHHHHHHH--cCCCEEEcCHHHHHHHHcCCchHHHHHHHHHHHH
Confidence 567888888887653 466655 23222 333345555555555444
No 193
>KOG4201 consensus Anthranilate synthase component II [Amino acid transport and metabolism]
Probab=88.75 E-value=1.5 Score=46.22 Aligned_cols=186 Identities=17% Similarity=0.197 Sum_probs=115.0
Q ss_pred hhhhhhhhcCCcEEEEeccccccccCCccccccccccCchHHHHHhhhhhcCCCCCCc-eEEeeccCCCCCCHHHHHHHH
Q 004491 504 ISAKFEEAGGVDLIVLYNSGRFRMAGRGSLAGLLPFADANAVVLEMANEVLPVVKEVP-VLAGVCGTDPFRRVDYFLKQL 582 (749)
Q Consensus 504 lsAk~ae~gGaDli~~ynsGrfR~~G~~SlagllpygdaN~iv~e~~~eilp~v~~tP-ViaGv~atDP~~~~~~~l~~l 582 (749)
.-|..=++|||--|=++---.|=. |.-|+.+. .|.++.+...-| ++.==.-.|||--++..+
T Consensus 95 e~A~~Yak~GAs~iSVLTe~k~Fk------------GsledL~~--irk~~~~k~p~~~lL~KeFivd~~QI~~aR~--- 157 (289)
T KOG4201|consen 95 EQALAYAKGGASCISVLTEPKWFK------------GSLEDLVA--IRKIAGVKCPPKCLLRKEFIVDPYQIYEARL--- 157 (289)
T ss_pred HHHHHHHhcCceeeeeecCchhhc------------ccHHHHHH--HHHHhcCcCChHhHhHHHHccCHHHHHHHHh---
Confidence 346667789998888876655531 33344432 244444432211 333333446654443322
Q ss_pred HHcCccceecCCcccccchhhhhhhhhcCCchHHHHHHHHHHHHcCCcccccccCHHHHHHHHhccCcEEEeccCCCccc
Q 004491 583 ESIGFFGVQNFPTVGLFDGNFRQNLEETGMGYGLEVEMIDKAHKMGLLTTPYAFNEGEAVKMAKAGADIIVAHMGLTTSG 662 (749)
Q Consensus 583 k~~Gf~GV~NfPTvgliDG~fR~~LEe~G~gy~~EVemi~~A~~~gl~T~~yvf~~eqa~~Ma~AGaDiiv~h~GlT~gG 662 (749)
.|- -+|=||---.-+-+ ==+|++.++.+||-++-=|-+++|-.+..+-||.+|=++-
T Consensus 158 --~GA------DaVLLIvamLs~~~---------lk~l~k~~K~L~me~LVEVn~~eEm~raleiGakvvGvNN------ 214 (289)
T KOG4201|consen 158 --KGA------DAVLLIVAMLSDLL---------LKELYKISKDLGMEPLVEVNDEEEMQRALEIGAKVVGVNN------ 214 (289)
T ss_pred --cCC------ceeehHHHHcChHH---------HHHHHHHHHHcCCcceeeeccHHHHHHHHHhCcEEEeecC------
Confidence 232 35555543332221 1258899999999999999999999999999999874431
Q ss_pred ccccccccCHHHHHHHHHHHHHHHHHhCCCeEEEEccCCCCCHHHHHHHHhhCCCccEEecCccc-ccchHHHHHHHH
Q 004491 663 SIGAKTALSLDESVDRVQAIADAAHRINPDAIVLCHGGPISSPSEAEFILKRTKGVHGFYGASSM-ERLPVEQAITST 739 (749)
Q Consensus 663 ~~Ga~~~~sl~~~~~~~~~i~~aa~~~~pdii~l~hGGPi~~p~d~~~~l~~~~~~~Gf~g~Ss~-ERlP~E~ai~~~ 739 (749)
.+-.|.+--...+.++.+- ++.|+|+..--| |.||+|+.++- . .+++++.-|.|+ -.--.++.|.+.
T Consensus 215 ----RnL~sFeVDlstTskL~E~---i~kDvilva~SG-i~tpdDia~~q-~-~GV~avLVGEslmk~sDp~k~i~eL 282 (289)
T KOG4201|consen 215 ----RNLHSFEVDLSTTSKLLEG---IPKDVILVALSG-IFTPDDIAKYQ-K-AGVKAVLVGESLMKQSDPKKFIHEL 282 (289)
T ss_pred ----CccceeeechhhHHHHHhh---CccceEEEeccC-CCCHHHHHHHH-H-cCceEEEecHHHHhccCHHHHHHHH
Confidence 2233444445555565443 789999987765 89999999985 4 689999766554 444455555443
No 194
>PRK13523 NADPH dehydrogenase NamA; Provisional
Probab=88.74 E-value=11 Score=41.81 Aligned_cols=153 Identities=16% Similarity=0.154 Sum_probs=87.0
Q ss_pred cccHHHHHHHHHHHhhcCCCeEEeccccchhhhhhhhcCCcEEEEecc----------ccc--cccC-CccccccccccC
Q 004491 475 LQRTQAILSKLKYQIDKGLPIIGAGAGTGISAKFEEAGGVDLIVLYNS----------GRF--RMAG-RGSLAGLLPFAD 541 (749)
Q Consensus 475 ~~~r~~il~~L~~~i~~~~piig~gaGtGlsAk~ae~gGaDli~~yns----------Grf--R~~G-~~Slagllpygd 541 (749)
-||.+||.+-.++-+ -.||.+.++|.|-|=+.-. -.+ |-.- -||| -|
T Consensus 131 ~mt~eeI~~ii~~f~--------------~aA~~a~~aGfDgVeih~ahGyLl~qFlSp~~N~RtD~yGGsl------en 190 (337)
T PRK13523 131 EMTKEQIKETVLAFK--------------QAAVRAKEAGFDVIEIHGAHGYLINEFLSPLSNKRTDEYGGSP------EN 190 (337)
T ss_pred cCCHHHHHHHHHHHH--------------HHHHHHHHcCCCEEEEccccchHHHHhcCCccCCcCCCCCCCH------HH
Confidence 488899887666543 5799999999999987522 111 2111 0121 12
Q ss_pred chHHHHHhhhhhcCCCCCCceEEeeccCCCC------CCHHHHHHHHHHcCccceecCCcccccchhhhhhhhhcCCchH
Q 004491 542 ANAVVLEMANEVLPVVKEVPVLAGVCGTDPF------RRVDYFLKQLESIGFFGVQNFPTVGLFDGNFRQNLEETGMGYG 615 (749)
Q Consensus 542 aN~iv~e~~~eilp~v~~tPViaGv~atDP~------~~~~~~l~~lk~~Gf~GV~NfPTvgliDG~fR~~LEe~G~gy~ 615 (749)
-=.+++|..++|--.+ +.||..=+++.|-. -+.-++++.|.+.|+.-|. . +.| .+...-....-||.
T Consensus 191 R~Rf~~eii~~ir~~~-~~~v~vRis~~d~~~~G~~~~e~~~i~~~l~~~gvD~i~-v-s~g----~~~~~~~~~~~~~~ 263 (337)
T PRK13523 191 RYRFLREIIDAVKEVW-DGPLFVRISASDYHPGGLTVQDYVQYAKWMKEQGVDLID-V-SSG----AVVPARIDVYPGYQ 263 (337)
T ss_pred HHHHHHHHHHHHHHhc-CCCeEEEecccccCCCCCCHHHHHHHHHHHHHcCCCEEE-e-CCC----CCCCCCCCCCcccc
Confidence 2234555555555555 57998888886632 2345777889888854332 1 111 11000000011333
Q ss_pred HHH-HHHHHHHHcCCcccccccCHHHHHHHHhcc-CcEEEe
Q 004491 616 LEV-EMIDKAHKMGLLTTPYAFNEGEAVKMAKAG-ADIIVA 654 (749)
Q Consensus 616 ~EV-emi~~A~~~gl~T~~yvf~~eqa~~Ma~AG-aDiiv~ 654 (749)
.+. +-|+++-..=++....+.++++|+++.+.| +|.+..
T Consensus 264 ~~~~~~ik~~~~ipVi~~G~i~~~~~a~~~l~~g~~D~V~~ 304 (337)
T PRK13523 264 VPFAEHIREHANIATGAVGLITSGAQAEEILQNNRADLIFI 304 (337)
T ss_pred HHHHHHHHhhcCCcEEEeCCCCCHHHHHHHHHcCCCChHHh
Confidence 322 334554444455667888999999999887 898643
No 195
>PRK07114 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=88.63 E-value=3.3 Score=43.54 Aligned_cols=103 Identities=17% Similarity=0.171 Sum_probs=76.5
Q ss_pred HHHHHHHHcCCcccccccCHHHHHHHHhccCcEEEeccCCCcccccccccccCHHHHHHHHHHHHHHHHHhCCCeEEEEc
Q 004491 619 EMIDKAHKMGLLTTPYAFNEGEAVKMAKAGADIIVAHMGLTTSGSIGAKTALSLDESVDRVQAIADAAHRINPDAIVLCH 698 (749)
Q Consensus 619 emi~~A~~~gl~T~~yvf~~eqa~~Ma~AGaDiiv~h~GlT~gG~~Ga~~~~sl~~~~~~~~~i~~aa~~~~pdii~l~h 698 (749)
++++.|++.|+..+|=|+|+.|+.+..++|+|++=....- ..|. ..+++-+..=|++-++.-
T Consensus 103 ~v~~~~~~~~i~~iPG~~TpsEi~~A~~~Ga~~vKlFPA~----~~G~--------------~~ikal~~p~p~i~~~pt 164 (222)
T PRK07114 103 DIAKVCNRRKVPYSPGCGSLSEIGYAEELGCEIVKLFPGS----VYGP--------------GFVKAIKGPMPWTKIMPT 164 (222)
T ss_pred HHHHHHHHcCCCEeCCCCCHHHHHHHHHCCCCEEEECccc----ccCH--------------HHHHHHhccCCCCeEEeC
Confidence 6799999999999999999999999999999999888742 2221 234455666699999999
Q ss_pred cCCCCCH--HHHHHHHhhCCCccEEecCcccc---cchH--HHHHHHHHHhh
Q 004491 699 GGPISSP--SEAEFILKRTKGVHGFYGASSME---RLPV--EQAITSTMRQY 743 (749)
Q Consensus 699 GGPi~~p--~d~~~~l~~~~~~~Gf~g~Ss~E---RlP~--E~ai~~~~~~F 743 (749)
|| -++ +++...++ .++.++-.+|.+= -+-- -..|++..++|
T Consensus 165 GG--V~~~~~n~~~yl~--aGa~avg~Gs~L~~~~~~~~~~~~~i~~~a~~~ 212 (222)
T PRK07114 165 GG--VEPTEENLKKWFG--AGVTCVGMGSKLIPKEALAAKDYAGIEQKVREA 212 (222)
T ss_pred CC--CCcchhcHHHHHh--CCCEEEEEChhhcCccccccccHHHHHHHHHHH
Confidence 88 444 89999986 4667777688872 1221 14566666655
No 196
>PRK07709 fructose-bisphosphate aldolase; Provisional
Probab=88.56 E-value=2.3 Score=46.19 Aligned_cols=168 Identities=20% Similarity=0.268 Sum_probs=105.1
Q ss_pred hhhhhcCCcEEEEeccccccc-cCCccccccccccCchHHHHHhhhhhcCCCCCCceEEeeccCCCCCCHHHHHHHHHHc
Q 004491 507 KFEEAGGVDLIVLYNSGRFRM-AGRGSLAGLLPFADANAVVLEMANEVLPVVKEVPVLAGVCGTDPFRRVDYFLKQLESI 585 (749)
Q Consensus 507 k~ae~gGaDli~~ynsGrfR~-~G~~SlagllpygdaN~iv~e~~~eilp~v~~tPViaGv~atDP~~~~~~~l~~lk~~ 585 (749)
++||+-++.+||-.+.|.++. .|... .=.++..++++.- -.+||.-= .|=-.+.+ .+.+..+.
T Consensus 36 ~AAe~~~sPvIiq~~~~~~~~~~~~~~---------~~~~~~~~a~~~~---~~VPV~lH---LDHg~~~e-~i~~ai~~ 99 (285)
T PRK07709 36 AAAEEEKSPVILGVSEGAARHMTGFKT---------VVAMVKALIEEMN---ITVPVAIH---LDHGSSFE-KCKEAIDA 99 (285)
T ss_pred HHHHHHCCCEEEEcCcchhhhcCCHHH---------HHHHHHHHHHHcC---CCCcEEEE---CCCCCCHH-HHHHHHHc
Confidence 678999999999988887775 34222 1245555554321 02476533 34333444 45566778
Q ss_pred CccceecCCcccccchh---hhhhhhhcCCchHHHHHHHHHHHHcCCcc-----------------cccccCHHHHHHHH
Q 004491 586 GFFGVQNFPTVGLFDGN---FRQNLEETGMGYGLEVEMIDKAHKMGLLT-----------------TPYAFNEGEAVKMA 645 (749)
Q Consensus 586 Gf~GV~NfPTvgliDG~---fR~~LEe~G~gy~~EVemi~~A~~~gl~T-----------------~~yvf~~eqa~~Ma 645 (749)
||+.| +|||+ |-+|++.| + |+.+.||.+|+.- -.+-.++|||+.+.
T Consensus 100 GftSV-------M~DgS~lp~eeNi~~T-----r--evv~~Ah~~gv~VEaElG~igg~ed~~~~~~~~yT~peeA~~Fv 165 (285)
T PRK07709 100 GFTSV-------MIDASHHPFEENVETT-----K--KVVEYAHARNVSVEAELGTVGGQEDDVIAEGVIYADPAECKHLV 165 (285)
T ss_pred CCCEE-------EEeCCCCCHHHHHHHH-----H--HHHHHHHHcCCEEEEEEeccCCccCCcccccccCCCHHHHHHHH
Confidence 99776 78885 44554433 2 4466677655421 12235899999998
Q ss_pred h-ccCcEEEeccCCCcccccccccccCHHHHHHHHHHHHHHHHHhCCCeEEEEccCCCCCHHHHHHHHhh
Q 004491 646 K-AGADIIVAHMGLTTSGSIGAKTALSLDESVDRVQAIADAAHRINPDAIVLCHGGPISSPSEAEFILKR 714 (749)
Q Consensus 646 ~-AGaDiiv~h~GlT~gG~~Ga~~~~sl~~~~~~~~~i~~aa~~~~pdii~l~hGGPi~~p~d~~~~l~~ 714 (749)
+ -|+|.|-+=+|-..|-..| +..+.+ +++++|.++ + ++-+..|||-=...++++...+.
T Consensus 166 ~~TgvD~LAvaiGt~HG~Y~~-~p~L~~----~~L~~I~~~---~--~iPLVLHGgSG~~~e~~~~ai~~ 225 (285)
T PRK07709 166 EATGIDCLAPALGSVHGPYKG-EPNLGF----AEMEQVRDF---T--GVPLVLHGGTGIPTADIEKAISL 225 (285)
T ss_pred HHhCCCEEEEeecccccCcCC-CCccCH----HHHHHHHHH---H--CCCEEEeCCCCCCHHHHHHHHHc
Confidence 5 7999999999855554443 334554 467777553 2 45567899966667888877643
No 197
>PTZ00372 endonuclease 4-like protein; Provisional
Probab=88.54 E-value=26 Score=40.29 Aligned_cols=200 Identities=15% Similarity=0.194 Sum_probs=109.7
Q ss_pred CCCcccccHHHHHHHHHHHhhcCCCeEEe--ccccch--hhhhhhhcCCcEEEEeccccccccCCccccccccccCchHH
Q 004491 470 ARPETLQRTQAILSKLKYQIDKGLPIIGA--GAGTGI--SAKFEEAGGVDLIVLYNSGRFRMAGRGSLAGLLPFADANAV 545 (749)
Q Consensus 470 ~~~~~~~~r~~il~~L~~~i~~~~piig~--gaGtGl--sAk~ae~gGaDli~~ynsGrfR~~G~~SlagllpygdaN~i 545 (749)
..|...-+|..=...+++.-+.-+-.||+ .+.-|+ +.+.|..-|++-+-+|-.-.=++ .+--+..
T Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~~iGaHvSiaGG~~~a~~~a~~~g~~afqiF~~npr~w-----~~~~~~~------ 175 (413)
T PTZ00372 107 PKPKPNEDVDNAFNKIAELAEKSNVYIGAHVSASGGVDNSPINAYNIAGQAFALFLKNQRTW-----NSPPLSD------ 175 (413)
T ss_pred CCCCcchhhHHHHHHHHHHhhccCceEEEEEeccccHHHHHHHHHHcCCCEEEEEcCCCccC-----CCCCCCH------
Confidence 34666667777777777776666667774 333344 77888888999887764322111 1111112
Q ss_pred HHHhhhhhcCCCCCCceEEeeccCCCCCCHHHHHHHHHHcCccc--e---ecCCcccc--cchhhhhhhhhcCCchHHHH
Q 004491 546 VLEMANEVLPVVKEVPVLAGVCGTDPFRRVDYFLKQLESIGFFG--V---QNFPTVGL--FDGNFRQNLEETGMGYGLEV 618 (749)
Q Consensus 546 v~e~~~eilp~v~~tPViaGv~atDP~~~~~~~l~~lk~~Gf~G--V---~NfPTvgl--iDG~fR~~LEe~G~gy~~EV 618 (749)
.+...|.+.+++.|+.- | .-|+ +-| -|-.. +++=|
T Consensus 176 ---------------------------~~~~~f~~~~~~~gi~~~~i~~HapYl-INLASpd~e~----------rekSv 217 (413)
T PTZ00372 176 ---------------------------ETIDKFKENCKKYNYDPKFILPHGSYL-INLANPDKEK----------REKSY 217 (413)
T ss_pred ---------------------------HHHHHHHHHHHHcCCCcceEEeecCce-ecCCCCCHHH----------HHHHH
Confidence 23455555555555431 1 1111 100 01111 11222
Q ss_pred HHHHHHHHcCCcccccccCHHHHHHHHhccCcEEEeccCCCcccccccccccCHHHHHHHHHHHHHHHHHhCCCeEEEEc
Q 004491 619 EMIDKAHKMGLLTTPYAFNEGEAVKMAKAGADIIVAHMGLTTSGSIGAKTALSLDESVDRVQAIADAAHRINPDAIVLCH 698 (749)
Q Consensus 619 emi~~A~~~gl~T~~yvf~~eqa~~Ma~AGaDiiv~h~GlT~gG~~Ga~~~~sl~~~~~~~~~i~~aa~~~~pdii~l~h 698 (749)
+.+ .++.+...+-|++.+|.|.|...+.. +-+++.+++.+-++.+.+...++.+++-
T Consensus 218 ~~~----------------~~eL~rA~~LGa~~VV~HPGs~~~~~-------~~ee~i~~i~e~L~~~la~~~gV~IlLE 274 (413)
T PTZ00372 218 DAF----------------LDDLQRCEQLGIKLYNFHPGSTVGQC-------SKEEGIKNIADCINKAHEETKSVIIVLE 274 (413)
T ss_pred HHH----------------HHHHHHHHHcCCCEEEECCCcCCCCC-------CHHHHHHHHHHHHHHHHhCcCCCEEEEe
Confidence 222 34556667889999999999865422 2244555555444445555666766665
Q ss_pred -----cCCC-CCHHHHHHHHhhCCC----------ccEEecCcccccchHHHHHHHHHHhhc
Q 004491 699 -----GGPI-SSPSEAEFILKRTKG----------VHGFYGASSMERLPVEQAITSTMRQYK 744 (749)
Q Consensus 699 -----GGPi-~~p~d~~~~l~~~~~----------~~Gf~g~Ss~ERlP~E~ai~~~~~~FK 744 (749)
|.-| .+++|+.++++.... ||-|..+ ..|-++....+..++|.
T Consensus 275 Nmag~g~~lG~~~eeL~~Iid~v~~~~rlGvCLDTcHafaAG---ydl~t~e~~~~~l~~f~ 333 (413)
T PTZ00372 275 NTAGQKNSVGSKFEDLRDIIALVEDKSRVGVCLDTCHLFAAG---YDIRTKESFDKVMKEFD 333 (413)
T ss_pred cCCCCCCcccCCHHHHHHHHHhcCCcCCeEEEEEHHHHHhcC---CCCCcHHHHHHHHHHHH
Confidence 2233 589999999986532 3334333 34555566777776664
No 198
>cd04729 NanE N-acetylmannosamine-6-phosphate epimerase (NanE) converts N-acetylmannosamine-6-phosphate to N-acetylglucosamine-6-phosphate. This reaction is part of the pathway that allows the usage of sialic acid as a carbohydrate source. Sialic acids are a family of related sugars that are found as a component of glycoproteins, gangliosides, and other sialoglycoconjugates.
Probab=88.52 E-value=10 Score=38.76 Aligned_cols=121 Identities=17% Similarity=0.224 Sum_probs=66.4
Q ss_pred hhhhhhhcCCcEEEEeccccccccCCccccccccccCchHHHHHhhhhhcCCCCCCceEEeeccCCCCCCHHHHHHHHHH
Q 004491 505 SAKFEEAGGVDLIVLYNSGRFRMAGRGSLAGLLPFADANAVVLEMANEVLPVVKEVPVLAGVCGTDPFRRVDYFLKQLES 584 (749)
Q Consensus 505 sAk~ae~gGaDli~~ynsGrfR~~G~~SlagllpygdaN~iv~e~~~eilp~v~~tPViaGv~atDP~~~~~~~l~~lk~ 584 (749)
-.+.+.+.|||+|++-.+-+. .|.+..+.-+.+.+++.. +.|++.++. +. ....++.+
T Consensus 84 ~~~~a~~aGad~I~~~~~~~~-----------~p~~~~~~~~i~~~~~~g----~~~iiv~v~------t~-~ea~~a~~ 141 (219)
T cd04729 84 EVDALAAAGADIIALDATDRP-----------RPDGETLAELIKRIHEEY----NCLLMADIS------TL-EEALNAAK 141 (219)
T ss_pred HHHHHHHcCCCEEEEeCCCCC-----------CCCCcCHHHHHHHHHHHh----CCeEEEECC------CH-HHHHHHHH
Confidence 456777899998776432221 133323333333333322 467776542 22 23588889
Q ss_pred cCccceecCCcccccchhhhhhhhhcCCchHHHHHHHHHHHH---cCCcccccccCHHHHHHHHhccCcEEEecc
Q 004491 585 IGFFGVQNFPTVGLFDGNFRQNLEETGMGYGLEVEMIDKAHK---MGLLTTPYAFNEGEAVKMAKAGADIIVAHM 656 (749)
Q Consensus 585 ~Gf~GV~NfPTvgliDG~fR~~LEe~G~gy~~EVemi~~A~~---~gl~T~~yvf~~eqa~~Ma~AGaDiiv~h~ 656 (749)
.|+.-|..++. |. .+ ......+-.+ ++++..++ .-++...=+.++++++++.++|||.+++=-
T Consensus 142 ~G~d~i~~~~~-g~-t~---~~~~~~~~~~----~~l~~i~~~~~ipvia~GGI~~~~~~~~~l~~GadgV~vGs 207 (219)
T cd04729 142 LGFDIIGTTLS-GY-TE---ETAKTEDPDF----ELLKELRKALGIPVIAEGRINSPEQAAKALELGADAVVVGS 207 (219)
T ss_pred cCCCEEEccCc-cc-cc---cccCCCCCCH----HHHHHHHHhcCCCEEEeCCCCCHHHHHHHHHCCCCEEEEch
Confidence 99998853321 21 11 1111112222 34444443 334444446789999999999999988643
No 199
>TIGR03234 OH-pyruv-isom hydroxypyruvate isomerase. This enzyme interconverts tartronate semi-aldehyde (TSA, aka 2-hydroxy 3-oxopropionate) and hydroxypyruvate. The E. coli enzyme has been characterized and found to be specific for TSA, contain no cofactors, and have a rather high Km for hydroxypyruvate of 12.5 mM. The gene is ofter found in association with glyoxalate carboligase (which produces TSA), but has been shown to have no effect on growth on glyoxalate when knocked out. This is consistent with the fact that the gene for tartronate semialdehyde reductase (glxR) is also associated and may have primary responsibility for the catabolism of TSA.
Probab=88.50 E-value=4.6 Score=41.64 Aligned_cols=137 Identities=18% Similarity=0.191 Sum_probs=72.9
Q ss_pred CCHHHHHHHHHHcCccceecC-CcccccchhhhhhhhhcCCchHHHH-HHHH-HHHHcCCcccc-----cccCHHHHHHH
Q 004491 573 RRVDYFLKQLESIGFFGVQNF-PTVGLFDGNFRQNLEETGMGYGLEV-EMID-KAHKMGLLTTP-----YAFNEGEAVKM 644 (749)
Q Consensus 573 ~~~~~~l~~lk~~Gf~GV~Nf-PTvgliDG~fR~~LEe~G~gy~~EV-emi~-~A~~~gl~T~~-----yvf~~eqa~~M 644 (749)
.++++.++.+++.||.||.=+ |. ..---.+|+.|++.|+...--- .+-. ...+.++++.| +.-..+++-.+
T Consensus 14 ~~l~e~~~~~~e~G~~~vEl~~~~-~~~~~~l~~~l~~~gl~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 92 (254)
T TIGR03234 14 LPFLERFAAAAQAGFTGVEYLFPY-DWDAEALKARLAAAGLEQVLFNLPAGDWAAGERGIACLPGREEEFREGVALAIAY 92 (254)
T ss_pred CCHHHHHHHHHHcCCCEEEecCCc-cCCHHHHHHHHHHcCCeEEEEeCCCCccccCCCccccCCccHHHHHHHHHHHHHH
Confidence 479999999999999999743 32 1111235666666666432100 0000 00000000000 00011123333
Q ss_pred -HhccCcEEEeccCCCcccccccccccCHHHHHHHHHHHHHHHHHhCCCeEEEEc--------cCCCCCHHHHHHHHhhC
Q 004491 645 -AKAGADIIVAHMGLTTSGSIGAKTALSLDESVDRVQAIADAAHRINPDAIVLCH--------GGPISSPSEAEFILKRT 715 (749)
Q Consensus 645 -a~AGaDiiv~h~GlT~gG~~Ga~~~~sl~~~~~~~~~i~~aa~~~~pdii~l~h--------GGPi~~p~d~~~~l~~~ 715 (749)
.+.|+..|.++.|...+.. ......+..++.++++.+.|.+.+ +.+..+ |-.+.+++++..+++.+
T Consensus 93 a~~lg~~~i~~~~g~~~~~~---~~~~~~~~~~~~l~~l~~~A~~~g--i~l~lE~~~~~~~~~~~l~t~~~~~~li~~v 167 (254)
T TIGR03234 93 ARALGCPQVNCLAGKRPAGV---SPEEARATLVENLRYAADALDRIG--LTLLIEPINSFDMPGFFLTTTEQALAVIDDV 167 (254)
T ss_pred HHHhCCCEEEECcCCCCCCC---CHHHHHHHHHHHHHHHHHHHHhcC--CEEEEEECCcccCCCChhcCHHHHHHHHHHh
Confidence 4779999999887532211 111223445566777777776654 555554 33578999999999764
No 200
>PRK13307 bifunctional formaldehyde-activating enzyme/3-hexulose-6-phosphate synthase; Provisional
Probab=88.32 E-value=13 Score=42.38 Aligned_cols=133 Identities=16% Similarity=0.164 Sum_probs=91.0
Q ss_pred CCCceEEeeccCCCCCCHHHHHHHHHHcCccceecCCcccccchhhhhhhhhcCCchHHHHHHHHHHHHcCCcccccccC
Q 004491 558 KEVPVLAGVCGTDPFRRVDYFLKQLESIGFFGVQNFPTVGLFDGNFRQNLEETGMGYGLEVEMIDKAHKMGLLTTPYAFN 637 (749)
Q Consensus 558 ~~tPViaGv~atDP~~~~~~~l~~lk~~Gf~GV~NfPTvgliDG~fR~~LEe~G~gy~~EVemi~~A~~~gl~T~~yvf~ 637 (749)
++.||++=+--.||-.-+ .+.+.+.|...++=-. - .+.+.=-+.++.+++.|+...-=..|
T Consensus 225 ~~~~I~~DLK~~Di~~~v---v~~~a~aGAD~vTVH~----e------------a~~~ti~~ai~~akk~GikvgVD~ln 285 (391)
T PRK13307 225 PDAFIVADLKTLDTGNLE---ARMAADATADAVVISG----L------------APISTIEKAIHEAQKTGIYSILDMLN 285 (391)
T ss_pred CCCeEEEEecccChhhHH---HHHHHhcCCCEEEEec----c------------CCHHHHHHHHHHHHHcCCEEEEEEcC
Confidence 467899999988887443 7888899976654221 1 11222234788999999877653444
Q ss_pred ---H-HHHHHHHhccCcEEEeccCCCcccccccccccCHHHHHHHHHHHHHHHHHhCCCeEEEEccCCCCCHHHHHHHHh
Q 004491 638 ---E-GEAVKMAKAGADIIVAHMGLTTSGSIGAKTALSLDESVDRVQAIADAAHRINPDAIVLCHGGPISSPSEAEFILK 713 (749)
Q Consensus 638 ---~-eqa~~Ma~AGaDiiv~h~GlT~gG~~Ga~~~~sl~~~~~~~~~i~~aa~~~~pdii~l~hGGPi~~p~d~~~~l~ 713 (749)
+ +..+.+ ..++|+++.|-|...++. . . ..++++++. +.++++.+.+-|| | +++++..+++
T Consensus 286 p~tp~e~i~~l-~~~vD~Vllht~vdp~~~---~--~----~~~kI~~ik----k~~~~~~I~VdGG-I-~~eti~~l~~ 349 (391)
T PRK13307 286 VEDPVKLLESL-KVKPDVVELHRGIDEEGT---E--H----AWGNIKEIK----KAGGKILVAVAGG-V-RVENVEEALK 349 (391)
T ss_pred CCCHHHHHHHh-hCCCCEEEEccccCCCcc---c--c----hHHHHHHHH----HhCCCCcEEEECC-c-CHHHHHHHHH
Confidence 3 444545 889999999988877622 1 1 223555443 3377888888888 4 5999998884
Q ss_pred hCCCccEEecCccc
Q 004491 714 RTKGVHGFYGASSM 727 (749)
Q Consensus 714 ~~~~~~Gf~g~Ss~ 727 (749)
.++++|+-||++
T Consensus 350 --aGADivVVGsaI 361 (391)
T PRK13307 350 --AGADILVVGRAI 361 (391)
T ss_pred --cCCCEEEEeHHH
Confidence 478999999996
No 201
>cd04741 DHOD_1A_like Dihydroorotate dehydrogenase (DHOD) class 1A FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=88.31 E-value=27 Score=37.79 Aligned_cols=202 Identities=12% Similarity=0.114 Sum_probs=107.5
Q ss_pred hhhhhcCCcEEEEeccccccccCCcc--c-----cccccccCchHHHHHhhhhhcCCC-----CCCceEEeeccCCCCCC
Q 004491 507 KFEEAGGVDLIVLYNSGRFRMAGRGS--L-----AGLLPFADANAVVLEMANEVLPVV-----KEVPVLAGVCGTDPFRR 574 (749)
Q Consensus 507 k~ae~gGaDli~~ynsGrfR~~G~~S--l-----agllpygdaN~iv~e~~~eilp~v-----~~tPViaGv~atDP~~~ 574 (749)
+..+..|+-+|++-.-...-..|... + +.+-.+|-.|.=+-.+.+++.+.. .+.||++-+++. | -+
T Consensus 27 ~~~~~~G~Gavv~ktit~~~~~gn~~pr~~~~~~~~~N~~G~~n~g~~~~~~~i~~~~~~~~~~~~pvivsi~g~-~-~~ 104 (294)
T cd04741 27 LELAASSTGAVTTRSSTLAGRPGNPEPRYYAFPLGSINSLGLPNLGLDYYLEYIRTISDGLPGSAKPFFISVTGS-A-ED 104 (294)
T ss_pred HHHHHcCCcEEEeCcccCCCCCCCCCCcEEecCccccccccCCCcCHHHHHHHHHHHhhhccccCCeEEEECCCC-H-HH
Confidence 44455899999987665554434222 1 112223444544444455555543 258999999998 5 56
Q ss_pred HHHHHHHHHHc---Cccce-ecC--CcccccchhhhhhhhhcCCchHHHHHHHHHHHHcCCccccc------ccCHHHHH
Q 004491 575 VDYFLKQLESI---GFFGV-QNF--PTVGLFDGNFRQNLEETGMGYGLEVEMIDKAHKMGLLTTPY------AFNEGEAV 642 (749)
Q Consensus 575 ~~~~l~~lk~~---Gf~GV-~Nf--PTvgliDG~fR~~LEe~G~gy~~EVemi~~A~~~gl~T~~y------vf~~eqa~ 642 (749)
+-+..+++.+. |+.+| .|+ |.+. |. + ..+--+++=.++++..++. ..+|. -++.++..
T Consensus 105 ~~~~~~~~~~~~~~~ad~ielN~sCPn~~---~~-~----~~~~~~~~~~~i~~~v~~~--~~iPv~vKl~p~~~~~~~~ 174 (294)
T cd04741 105 IAAMYKKIAAHQKQFPLAMELNLSCPNVP---GK-P----PPAYDFDATLEYLTAVKAA--YSIPVGVKTPPYTDPAQFD 174 (294)
T ss_pred HHHHHHHHHhhccccccEEEEECCCCCCC---Cc-c----cccCCHHHHHHHHHHHHHh--cCCCEEEEeCCCCCHHHHH
Confidence 66667777665 56665 355 6642 21 1 1122234445566665553 12331 13555444
Q ss_pred HHH----hc--cCcEEEec----------cCCCccccccc---ccccC----HHHHHHHHHHHHHHHHHhCCCeEEEEcc
Q 004491 643 KMA----KA--GADIIVAH----------MGLTTSGSIGA---KTALS----LDESVDRVQAIADAAHRINPDAIVLCHG 699 (749)
Q Consensus 643 ~Ma----~A--GaDiiv~h----------~GlT~gG~~Ga---~~~~s----l~~~~~~~~~i~~aa~~~~pdii~l~hG 699 (749)
+++ ++ |+|-|+++ .--++ -.+.. ...+| ...+.+.+.++ .++...++-++.-|
T Consensus 175 ~~a~~l~~~~~G~~gi~~~Nt~~~~~~id~~~~~-~~~~~~~~~gG~SG~~i~~~al~~v~~~---~~~~~~~ipIig~G 250 (294)
T cd04741 175 TLAEALNAFACPISFITATNTLGNGLVLDPERET-VVLKPKTGFGGLAGAYLHPLALGNVRTF---RRLLPSEIQIIGVG 250 (294)
T ss_pred HHHHHHhccccCCcEEEEEccCCccccccCCCCC-cccCCCCCCCCcCchhhHHHHHHHHHHH---HHhcCCCCCEEEeC
Confidence 443 45 89988853 21111 00100 01222 33344444444 34444456666666
Q ss_pred CCCCCHHHHHHHHhhCCCccEEecCccc
Q 004491 700 GPISSPSEAEFILKRTKGVHGFYGASSM 727 (749)
Q Consensus 700 GPi~~p~d~~~~l~~~~~~~Gf~g~Ss~ 727 (749)
| |.+++|+..++. .++++.--+|.+
T Consensus 251 G-I~s~~da~e~l~--aGA~~Vqv~ta~ 275 (294)
T cd04741 251 G-VLDGRGAFRMRL--AGASAVQVGTAL 275 (294)
T ss_pred C-CCCHHHHHHHHH--cCCCceeEchhh
Confidence 6 999999999994 566766555553
No 202
>PRK07028 bifunctional hexulose-6-phosphate synthase/ribonuclease regulator; Validated
Probab=88.25 E-value=2.6 Score=47.67 Aligned_cols=119 Identities=16% Similarity=0.179 Sum_probs=77.5
Q ss_pred HHHHHHHHcCccceecCCcccccchhhhhhhhhcCCchHH-HHHHHHHHHHcCCcccc--cc-cC-HHHHHHHHhccCcE
Q 004491 577 YFLKQLESIGFFGVQNFPTVGLFDGNFRQNLEETGMGYGL-EVEMIDKAHKMGLLTTP--YA-FN-EGEAVKMAKAGADI 651 (749)
Q Consensus 577 ~~l~~lk~~Gf~GV~NfPTvgliDG~fR~~LEe~G~gy~~-EVemi~~A~~~gl~T~~--yv-f~-~eqa~~Ma~AGaDi 651 (749)
.+++...+.|-.||.=.. .-+ +. -.+.++.|++.|+.... +- -+ .++++...+.|+|.
T Consensus 72 ~~v~~a~~aGAdgV~v~g---~~~--------------~~~~~~~i~~a~~~G~~~~~g~~s~~t~~e~~~~a~~~GaD~ 134 (430)
T PRK07028 72 IEVEMAAKAGADIVCILG---LAD--------------DSTIEDAVRAARKYGVRLMADLINVPDPVKRAVELEELGVDY 134 (430)
T ss_pred HHHHHHHHcCCCEEEEec---CCC--------------hHHHHHHHHHHHHcCCEEEEEecCCCCHHHHHHHHHhcCCCE
Confidence 388889999998876221 101 11 13678889998876554 11 12 46678888999999
Q ss_pred EEeccCCCcccccccccccCHHHHHHHHHHHHHHHHHhCCCeEEEEccCCCCCHHHHHHHHhhCCCccEEecCccccc
Q 004491 652 IVAHMGLTTSGSIGAKTALSLDESVDRVQAIADAAHRINPDAIVLCHGGPISSPSEAEFILKRTKGVHGFYGASSMER 729 (749)
Q Consensus 652 iv~h~GlT~gG~~Ga~~~~sl~~~~~~~~~i~~aa~~~~pdii~l~hGGPi~~p~d~~~~l~~~~~~~Gf~g~Ss~ER 729 (749)
|..|.|.++.- .+. . ..+.++++.+. -++-+++|||= +++.+..+++. +++|++-+|++=+
T Consensus 135 I~~~pg~~~~~-~~~---~----~~~~l~~l~~~-----~~iPI~a~GGI--~~~n~~~~l~a--GAdgv~vGsaI~~ 195 (430)
T PRK07028 135 INVHVGIDQQM-LGK---D----PLELLKEVSEE-----VSIPIAVAGGL--DAETAAKAVAA--GADIVIVGGNIIK 195 (430)
T ss_pred EEEEeccchhh-cCC---C----hHHHHHHHHhh-----CCCcEEEECCC--CHHHHHHHHHc--CCCEEEEChHHcC
Confidence 99998876321 111 1 12344444332 23668889984 78999888854 6899999999755
No 203
>PRK09722 allulose-6-phosphate 3-epimerase; Provisional
Probab=88.19 E-value=11 Score=39.73 Aligned_cols=152 Identities=18% Similarity=0.241 Sum_probs=98.0
Q ss_pred ceEEeeccCCCCCCHHHHHHHHHHcCccceecCCcccccchhhhhhhhhcCCchHHHHHHHHHHHHcCCcccccccCHHH
Q 004491 561 PVLAGVCGTDPFRRVDYFLKQLESIGFFGVQNFPTVGLFDGNFRQNLEETGMGYGLEVEMIDKAHKMGLLTTPYAFNEGE 640 (749)
Q Consensus 561 PViaGv~atDP~~~~~~~l~~lk~~Gf~GV~NfPTvgliDG~fR~~LEe~G~gy~~EVemi~~A~~~gl~T~~yvf~~eq 640 (749)
.+...+.+.|+ .++.+-+++|++ | ..|=-+=.+||+|=-|+ .+|.+ .|+.||+-...-+=.==.|-|+++
T Consensus 4 ~I~pSil~ad~-~~l~~el~~l~~-g----~d~lH~DiMDG~FVPN~---tfg~~-~i~~ir~~t~~~~DvHLMv~~P~~ 73 (229)
T PRK09722 4 KISPSLMCMDL-LKFKEQIEFLNS-K----ADYFHIDIMDGHFVPNL---TLSPF-FVSQVKKLASKPLDVHLMVTDPQD 73 (229)
T ss_pred eEEeehhhcCH-HHHHHHHHHHHh-C----CCEEEEecccCccCCCc---ccCHH-HHHHHHhcCCCCeEEEEEecCHHH
Confidence 34556677776 456666677765 4 45556778999999886 35554 566666432111111123556754
Q ss_pred -HHHHHhccCcEEEeccCCCcc---c------ccccccc------cC----------------------------HHHHH
Q 004491 641 -AVKMAKAGADIIVAHMGLTTS---G------SIGAKTA------LS----------------------------LDESV 676 (749)
Q Consensus 641 -a~~Ma~AGaDiiv~h~GlT~g---G------~~Ga~~~------~s----------------------------l~~~~ 676 (749)
.+.+++||||+|+.|.--+.. . ..|.+.. .+ ++++.
T Consensus 74 ~i~~~~~aGad~it~H~Ea~~~~~~~~i~~Ik~~G~kaGlalnP~T~~~~l~~~l~~vD~VLvMsV~PGf~GQ~fi~~~l 153 (229)
T PRK09722 74 YIDQLADAGADFITLHPETINGQAFRLIDEIRRAGMKVGLVLNPETPVESIKYYIHLLDKITVMTVDPGFAGQPFIPEML 153 (229)
T ss_pred HHHHHHHcCCCEEEECccCCcchHHHHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHhcCEEEEEEEcCCCcchhccHHHH
Confidence 678899999999999995431 0 1122211 11 23455
Q ss_pred HHHHHHHHHHHHhCCCeEEEEccCCCCCHHHHHHHHhhCCCccEEecCcc
Q 004491 677 DRVQAIADAAHRINPDAIVLCHGGPISSPSEAEFILKRTKGVHGFYGASS 726 (749)
Q Consensus 677 ~~~~~i~~aa~~~~pdii~l~hGGPi~~p~d~~~~l~~~~~~~Gf~g~Ss 726 (749)
++++++.+...+.+.++.+.+-|| -+.+-+..+. . .+++.|+.|||
T Consensus 154 ~KI~~lr~~~~~~~~~~~IeVDGG--I~~~~i~~~~-~-aGad~~V~Gss 199 (229)
T PRK09722 154 DKIAELKALRERNGLEYLIEVDGS--CNQKTYEKLM-E-AGADVFIVGTS 199 (229)
T ss_pred HHHHHHHHHHHhcCCCeEEEEECC--CCHHHHHHHH-H-cCCCEEEEChH
Confidence 666666666666777899999999 5688888877 3 57899998865
No 204
>PRK12331 oxaloacetate decarboxylase; Provisional
Probab=88.16 E-value=9.1 Score=44.16 Aligned_cols=113 Identities=21% Similarity=0.254 Sum_probs=72.9
Q ss_pred hhhhhcCCCCCCceEEee-----ccCCCCCC--HHHHHHHHHHcCccceecCCcccccchhhhhhhhhcCCchHHHHHHH
Q 004491 549 MANEVLPVVKEVPVLAGV-----CGTDPFRR--VDYFLKQLESIGFFGVQNFPTVGLFDGNFRQNLEETGMGYGLEVEMI 621 (749)
Q Consensus 549 ~~~eilp~v~~tPViaGv-----~atDP~~~--~~~~l~~lk~~Gf~GV~NfPTvgliDG~fR~~LEe~G~gy~~EVemi 621 (749)
..+++-..++++++..=+ .+.-||-+ +..|+++..+.|..-|.-|=.+.-++ |+++ ++
T Consensus 65 ~l~~l~~~~~~~~l~~l~r~~N~~G~~~~pddvv~~~v~~A~~~Gvd~irif~~lnd~~-----n~~~----------~v 129 (448)
T PRK12331 65 RLRKIRKAVKKTKLQMLLRGQNLLGYRNYADDVVESFVQKSVENGIDIIRIFDALNDVR-----NLET----------AV 129 (448)
T ss_pred HHHHHHHhCCCCEEEEEeccccccccccCchhhHHHHHHHHHHCCCCEEEEEEecCcHH-----HHHH----------HH
Confidence 334444445667764322 34444432 78999999999998887774433332 4433 78
Q ss_pred HHHHHcCCc---ccccccCH--------HHHHHHHhccCcEEEeccCCCcccccccccccCHHHHHHHHHHHHHH
Q 004491 622 DKAHKMGLL---TTPYAFNE--------GEAVKMAKAGADIIVAHMGLTTSGSIGAKTALSLDESVDRVQAIADA 685 (749)
Q Consensus 622 ~~A~~~gl~---T~~yvf~~--------eqa~~Ma~AGaDiiv~h~GlT~gG~~Ga~~~~sl~~~~~~~~~i~~a 685 (749)
+.|++.|+. ++.|.+++ +-|+++.++|||.||+- -+.| ..+-+++.+++.++.++
T Consensus 130 ~~ak~~G~~v~~~i~~t~~p~~~~~~~~~~a~~l~~~Gad~I~i~---Dt~G------~l~P~~v~~lv~alk~~ 195 (448)
T PRK12331 130 KATKKAGGHAQVAISYTTSPVHTIDYFVKLAKEMQEMGADSICIK---DMAG------ILTPYVAYELVKRIKEA 195 (448)
T ss_pred HHHHHcCCeEEEEEEeecCCCCCHHHHHHHHHHHHHcCCCEEEEc---CCCC------CCCHHHHHHHHHHHHHh
Confidence 999999984 45677765 77899999999999874 1222 23556666666666543
No 205
>PRK08649 inosine 5-monophosphate dehydrogenase; Validated
Probab=88.16 E-value=5.4 Score=44.83 Aligned_cols=167 Identities=17% Similarity=0.185 Sum_probs=88.1
Q ss_pred CCCceEEeeccCCCCCCHHHHHHHHHHcCccceec-------CCcccccchhhhhh---------hhhcCCchH--HHHH
Q 004491 558 KEVPVLAGVCGTDPFRRVDYFLKQLESIGFFGVQN-------FPTVGLFDGNFRQN---------LEETGMGYG--LEVE 619 (749)
Q Consensus 558 ~~tPViaGv~atDP~~~~~~~l~~lk~~Gf~GV~N-------fPTvgliDG~fR~~---------LEe~G~gy~--~EVe 619 (749)
-+.|++.+=.. ...-..|-..+.+.|--|+.+ |++.--+--+++.. -+.+.-.|+ +=.+
T Consensus 46 i~~Piv~a~M~---gVt~~~la~avs~~GglGvl~~~gl~~~~~~~e~l~~qi~~~~~~~~~~~~~~~~~~P~~p~l~~~ 122 (368)
T PRK08649 46 FEIPIIASPMD---AVVSPETAIELGKLGGLGVLNLEGLWTRYEDPEPILDEIASLGKDEATRLMQELYAEPIKPELITE 122 (368)
T ss_pred ccCcEeccCCc---ccCCHHHHHHHHhCCCceEEeeccccccCCCHHHHHHHHHhcCcHHHHHHHHHhhcCCCCHHHHHH
Confidence 35776665221 122236677777888777777 22222222222110 111111232 2256
Q ss_pred HHHHHHHcCCccccc-c---cCHHHHHHHHhccCcEEEeccCCCcccccccccccCHHHHHHHHHHHHHHHHHhCCCeEE
Q 004491 620 MIDKAHKMGLLTTPY-A---FNEGEAVKMAKAGADIIVAHMGLTTSGSIGAKTALSLDESVDRVQAIADAAHRINPDAIV 695 (749)
Q Consensus 620 mi~~A~~~gl~T~~y-v---f~~eqa~~Ma~AGaDiiv~h~GlT~gG~~Ga~~~~sl~~~~~~~~~i~~aa~~~~pdii~ 695 (749)
+|+..++.++ ++.. . ...+-++.+.++|+|+||+|.....-...+.. . ..++ +.+..++. ++.|
T Consensus 123 iv~~~~~~~V-~v~vr~~~~~~~e~a~~l~eaGvd~I~vhgrt~~~~h~~~~-~-~~~~-------i~~~ik~~--~ipV 190 (368)
T PRK08649 123 RIAEIRDAGV-IVAVSLSPQRAQELAPTVVEAGVDLFVIQGTVVSAEHVSKE-G-EPLN-------LKEFIYEL--DVPV 190 (368)
T ss_pred HHHHHHhCeE-EEEEecCCcCHHHHHHHHHHCCCCEEEEeccchhhhccCCc-C-CHHH-------HHHHHHHC--CCCE
Confidence 7777777653 2222 2 23577888899999999999542211111111 0 1222 23333333 4445
Q ss_pred EEccCCCCCHHHHHHHHhhCCCccEEecC----c---c--cc--cchHHHHHHHHHHhh
Q 004491 696 LCHGGPISSPSEAEFILKRTKGVHGFYGA----S---S--ME--RLPVEQAITSTMRQY 743 (749)
Q Consensus 696 l~hGGPi~~p~d~~~~l~~~~~~~Gf~g~----S---s--~E--RlP~E~ai~~~~~~F 743 (749)
++ |-|.++++++.+++ .++|+..-+ | + .. -+|.=.||.+..+..
T Consensus 191 Ia--G~V~t~e~A~~l~~--aGAD~V~VG~G~Gs~~~t~~~~g~g~p~~~ai~~~~~a~ 245 (368)
T PRK08649 191 IV--GGCVTYTTALHLMR--TGAAGVLVGIGPGAACTSRGVLGIGVPMATAIADVAAAR 245 (368)
T ss_pred EE--eCCCCHHHHHHHHH--cCCCEEEECCCCCcCCCCcccCCCCcCHHHHHHHHHHHH
Confidence 44 45999999999995 677876322 1 1 11 268777888877543
No 206
>PRK05835 fructose-bisphosphate aldolase; Provisional
Probab=87.87 E-value=20 Score=39.63 Aligned_cols=155 Identities=21% Similarity=0.319 Sum_probs=94.9
Q ss_pred hhhhhhcCCcEEEEeccccccccCCccccccccccCchHHHHHhhhhhcCCCCCCceEEeeccCCCCCCHHHHHHHHHHc
Q 004491 506 AKFEEAGGVDLIVLYNSGRFRMAGRGSLAGLLPFADANAVVLEMANEVLPVVKEVPVLAGVCGTDPFRRVDYFLKQLESI 585 (749)
Q Consensus 506 Ak~ae~gGaDli~~ynsGrfR~~G~~SlagllpygdaN~iv~e~~~eilp~v~~tPViaGv~atDP~~~~~~~l~~lk~~ 585 (749)
-+.||+-+..+||-.+.|..+..|.. ..=.++..++++ ...+||.-= .|=-.+.+ .+++..+.
T Consensus 34 i~AAe~~~sPvIlq~s~~~~~~~g~~---------~~~~~~~~~a~~----~~~VPValH---LDHg~~~e-~i~~ai~~ 96 (307)
T PRK05835 34 FEAGNEENSPLFIQASEGAIKYMGID---------MAVGMVKIMCER----YPHIPVALH---LDHGTTFE-SCEKAVKA 96 (307)
T ss_pred HHHHHHHCCCEEEEcCccHHhhCChH---------HHHHHHHHHHHh----cCCCeEEEE---CCCCCCHH-HHHHHHHc
Confidence 46789999999998888776644421 111345555544 223576532 34444444 45566777
Q ss_pred CccceecCCcccccchh---hhhhhhhcCCchHHHHHHHHHHHHcCCcc------c-------------ccccCHHHHHH
Q 004491 586 GFFGVQNFPTVGLFDGN---FRQNLEETGMGYGLEVEMIDKAHKMGLLT------T-------------PYAFNEGEAVK 643 (749)
Q Consensus 586 Gf~GV~NfPTvgliDG~---fR~~LEe~G~gy~~EVemi~~A~~~gl~T------~-------------~yvf~~eqa~~ 643 (749)
||+.| ++||+ |-+|++.| -+..+.||.+|+.- + .+-.+++||++
T Consensus 97 GftSV-------M~DgS~l~~eeNi~~T-------~~vve~Ah~~gv~VEaElG~vgg~ed~~~~~~~~~~~TdPeeA~~ 162 (307)
T PRK05835 97 GFTSV-------MIDASHHAFEENLELT-------SKVVKMAHNAGVSVEAELGRLMGIEDNISVDEKDAVLVNPKEAEQ 162 (307)
T ss_pred CCCEE-------EEeCCCCCHHHHHHHH-------HHHHHHHHHcCCEEEEEecccCCccCCcccccccccCCCHHHHHH
Confidence 99776 78885 45555433 23456677655421 1 22457899999
Q ss_pred HHh-ccCcEEEeccCCCccccc--ccccccCHHHHHHHHHHHHHHHHHhCCCeEEEEccCC
Q 004491 644 MAK-AGADIIVAHMGLTTSGSI--GAKTALSLDESVDRVQAIADAAHRINPDAIVLCHGGP 701 (749)
Q Consensus 644 Ma~-AGaDiiv~h~GlT~gG~~--Ga~~~~sl~~~~~~~~~i~~aa~~~~pdii~l~hGGP 701 (749)
+.+ -|+|.|-+=+|-..|-.. | +..+.+ +++++|.++. ++-+..|||-
T Consensus 163 Fv~~TgvD~LAvaiGt~HG~Yk~~~-~p~L~f----~~L~~I~~~~-----~iPLVLHGgS 213 (307)
T PRK05835 163 FVKESQVDYLAPAIGTSHGAFKFKG-EPKLDF----ERLQEVKRLT-----NIPLVLHGAS 213 (307)
T ss_pred HHHhhCCCEEEEccCccccccCCCC-CCccCH----HHHHHHHHHh-----CCCEEEeCCC
Confidence 985 599999999886665554 3 223444 3777775543 4545679983
No 207
>TIGR02429 pcaI_scoA_fam 3-oxoacid CoA-transferase, A subunit. Various members of this family are characterized as the A subunits of succinyl-CoA:3-ketoacid-CoA transferase (EC 2.8.3.5), beta-ketoadipate:succinyl-CoA transferase (EC 2.8.3.6), acetyl-CoA:acetoacetate CoA transferase (EC 2.8.3.8), and butyrate-acetoacetate CoA-transferase (EC 2.8.3.9). This represents a very distinct clade with strong sequence conservation within the larger family defined by Pfam model pfam01144. The B subunit represents a different clade in pfam01144, described by TIGR02428. The two are found in general as tandem genes and occasionally as a fusion.
Probab=87.85 E-value=2.8 Score=44.02 Aligned_cols=128 Identities=13% Similarity=0.204 Sum_probs=87.8
Q ss_pred CCCcEEEEeccCCchHHHHHHHHHHHhcCccEEEEe-cCCCchHHHHHHHHcCCceEEEeCc-----hhhhhhhhhCCcc
Q 004491 207 KEKCTVGITMFGVTTPCVNAVKERLEKEGYETMVFH-ATGVGGRAMEALVKEGFIQGVLDIT-----TTEVADYVVGGVM 280 (749)
Q Consensus 207 ~~kp~IgiTMFGvTTp~V~~~r~~Le~~GyEvlVFH-ATG~GGrAME~Li~eG~~~gVlDlT-----ttElaD~l~GGv~ 280 (749)
.+.-+|++.-||..--....+++.+++.-.+-.++| +.|.||+-++.|+.+|++.-++==- ..++.+.+..|-+
T Consensus 17 ~DG~ti~~gGf~~~~~P~ali~~l~r~~~~~Ltlv~~~~g~~~~g~~~L~~~G~Vkr~i~s~~~~~~~~~~~~~~~~g~i 96 (222)
T TIGR02429 17 PDGATIMIGGFGTAGQPFELIDALIDTGAKDLTIVSNNAGNGEIGLAALLKAGQVRKLICSFPRQSDSYVFDELYRAGKI 96 (222)
T ss_pred CCCCEEEECCcCCccCcHHHHHHHHhcCCCCcEEEecCCCCCCccHHHHHhCCCEeEEEccccCCCCCHHHHHHHHcCCe
Confidence 456689999998654335556665554336677777 8899999999999999998765321 1135666666633
Q ss_pred C-----CC--CchhhhhhhcCCCeEEecCccccccCCCCCCCCccccCCcee---eecCcceEEecC
Q 004491 281 A-----CD--SSRFDATIEKKIPLVLSVGALDMVNFGAKDTIPSKFQRRKIH---VHNQQVSLMRTT 337 (749)
Q Consensus 281 s-----aG--p~RL~AA~~~GIPqVVspGalDmVnFG~~dtvPe~f~~R~~~---~HNp~vTlmRTt 337 (749)
. .| -+||+|+ .+|+|-+..+.++.-.--+.++. ..|.++.+. .-+|.|+++|-+
T Consensus 97 e~~~~p~g~l~~~lrA~-a~G~P~~~t~~glGT~v~~g~~~--~~f~G~~~l~~~a~~~DvAlIha~ 160 (222)
T TIGR02429 97 ELELVPQGTLAERIRAA-GAGLGAFFTPTGYGTLLAEGKET--REFDGKGYVLEYPLPADFALIKAH 160 (222)
T ss_pred EEEECCHHHHHHHHHHH-HCCCCceeeccccCccccCCcEE--EEECCcEEEEEcCCCCcEEEEEec
Confidence 2 21 2588887 57999999999866333365654 468888744 356789999955
No 208
>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed
Probab=87.68 E-value=21 Score=43.59 Aligned_cols=80 Identities=18% Similarity=0.106 Sum_probs=45.7
Q ss_pred HHHHHhccCcEEEeccCCCcccccc-cccccCHHHHHHHHHHHHHHHHHhCCCeEEEEccCCCCCHHHHHHHHhhCCCcc
Q 004491 641 AVKMAKAGADIIVAHMGLTTSGSIG-AKTALSLDESVDRVQAIADAAHRINPDAIVLCHGGPISSPSEAEFILKRTKGVH 719 (749)
Q Consensus 641 a~~Ma~AGaDiiv~h~GlT~gG~~G-a~~~~sl~~~~~~~~~i~~aa~~~~pdii~l~hGGPi~~p~d~~~~l~~~~~~~ 719 (749)
|+.+.++|+|.|.+|-|.+.....- .......+ .+++|.++ + ++.|++- |-|.+|++++.+++. ..+|
T Consensus 644 ~~~l~~~g~d~i~vs~g~~~~~~~~~~~~~~~~~----~~~~ik~~---~--~~pv~~~-G~i~~~~~a~~~l~~-g~~D 712 (765)
T PRK08255 644 ARAFKAAGADLIDVSSGQVSKDEKPVYGRMYQTP----FADRIRNE---A--GIATIAV-GAISEADHVNSIIAA-GRAD 712 (765)
T ss_pred HHHHHhcCCcEEEeCCCCCCcCCCCCcCccccHH----HHHHHHHH---c--CCEEEEe-CCCCCHHHHHHHHHc-CCcc
Confidence 4556678999999998865432110 00011111 12222221 1 4555554 679999999999977 5567
Q ss_pred EEecCcccccch
Q 004491 720 GFYGASSMERLP 731 (749)
Q Consensus 720 Gf~g~Ss~ERlP 731 (749)
.--=+..+=+=|
T Consensus 713 ~v~~gR~~l~dP 724 (765)
T PRK08255 713 LCALARPHLADP 724 (765)
T ss_pred eeeEcHHHHhCc
Confidence 665555554433
No 209
>PRK12656 fructose-6-phosphate aldolase; Reviewed
Probab=87.63 E-value=2.8 Score=44.10 Aligned_cols=116 Identities=17% Similarity=0.282 Sum_probs=84.7
Q ss_pred HHHHHHHHHcCCccc-ccccCHHHHHHHHhccCcEEEeccCCCcccccccccccCHHHHHHHHHHHHHHHHHhCCCeEEE
Q 004491 618 VEMIDKAHKMGLLTT-PYAFNEGEAVKMAKAGADIIVAHMGLTTSGSIGAKTALSLDESVDRVQAIADAAHRINPDAIVL 696 (749)
Q Consensus 618 Vemi~~A~~~gl~T~-~yvf~~eqa~~Ma~AGaDiiv~h~GlT~gG~~Ga~~~~sl~~~~~~~~~i~~aa~~~~pdii~l 696 (749)
++.+++-.+.|+-+. --+|+.+||...++||||.|-+.+|.-.- .|. |....+++|.+..+..+++.-+|
T Consensus 95 l~Ai~~L~~~Gi~vn~T~ifs~~Qa~~Aa~aGa~yvsPyvgRi~d--~g~-------D~~~~i~~i~~~~~~~~~~tkIL 165 (222)
T PRK12656 95 LAAIKTLKAEGYHITATAIYTVFQGLLAIEAGADYLAPYYNRMEN--LNI-------DSNAVIGQLAEAIDRENSDSKIL 165 (222)
T ss_pred HHHHHHHHHCCCceEEeeeCCHHHHHHHHHCCCCEEecccchhhh--cCC-------CHHHHHHHHHHHHHhcCCCCEEE
Confidence 577888888887654 35999999999999999999999986421 111 23567788888888888888888
Q ss_pred EccCCCCCHHHHHHHHhhCCCccEE-ecCcccccc---h-HHHHHHHHHHhhccc
Q 004491 697 CHGGPISSPSEAEFILKRTKGVHGF-YGASSMERL---P-VEQAITSTMRQYKSI 746 (749)
Q Consensus 697 ~hGGPi~~p~d~~~~l~~~~~~~Gf-~g~Ss~ERl---P-~E~ai~~~~~~FK~~ 746 (749)
+.-+.+++++...+. .|||-. +.-.-++.+ | +++++.+-.+.|+++
T Consensus 166 --aAS~r~~~~v~~a~~--~G~d~vTvp~~vl~~l~~~p~t~~~~~~F~~dw~~~ 216 (222)
T PRK12656 166 --AASFKNVAQVNKAFA--LGAQAVTAGPDVFEAAFAMPSIQKAVDDFADDWEAI 216 (222)
T ss_pred --EEecCCHHHHHHHHH--cCCCEEecCHHHHHHHhcCCcHHHHHHHHHHHHHHh
Confidence 445777777776653 467766 666667776 3 677777776666654
No 210
>PRK08883 ribulose-phosphate 3-epimerase; Provisional
Probab=87.51 E-value=6.2 Score=41.21 Aligned_cols=167 Identities=16% Similarity=0.162 Sum_probs=97.7
Q ss_pred eccCCCCCCHHHHHHHHHHcCccceecCCcccccchhhhhhhhhcCCchHHHHHHHHHH-HHcCCcccccccCHH-HHHH
Q 004491 566 VCGTDPFRRVDYFLKQLESIGFFGVQNFPTVGLFDGNFRQNLEETGMGYGLEVEMIDKA-HKMGLLTTPYAFNEG-EAVK 643 (749)
Q Consensus 566 v~atDP~~~~~~~l~~lk~~Gf~GV~NfPTvgliDG~fR~~LEe~G~gy~~EVemi~~A-~~~gl~T~~yvf~~e-qa~~ 643 (749)
+.+.|+ .++.+-+++|++.|..= =-+=..||+|=.|+ .+|. .-|+.||+- ...-+=.==-|-|++ -.+.
T Consensus 6 il~ad~-~~l~~~i~~l~~~g~~~----lH~DvmDG~Fvpn~---tfg~-~~i~~i~~~~~~~~~dvHLMv~~p~~~i~~ 76 (220)
T PRK08883 6 ILSADF-ARLGEDVEKVLAAGADV----VHFDVMDNHYVPNL---TFGA-PICKALRDYGITAPIDVHLMVKPVDRIIPD 76 (220)
T ss_pred hhhcCH-HHHHHHHHHHHHcCCCE----EEEecccCcccCcc---ccCH-HHHHHHHHhCCCCCEEEEeccCCHHHHHHH
Confidence 344454 46677788888877543 34667889998886 2332 134444432 111110001234554 4678
Q ss_pred HHhccCcEEEeccCCCccc--------ccccc--------cc--------------------------cCHHHHHHHHHH
Q 004491 644 MAKAGADIIVAHMGLTTSG--------SIGAK--------TA--------------------------LSLDESVDRVQA 681 (749)
Q Consensus 644 Ma~AGaDiiv~h~GlT~gG--------~~Ga~--------~~--------------------------~sl~~~~~~~~~ 681 (749)
+++||||+|+.|.--|.-= ..|.+ |. .-+....+++++
T Consensus 77 ~~~~gad~i~~H~Ea~~~~~~~l~~ik~~g~k~GlalnP~Tp~~~i~~~l~~~D~vlvMtV~PGfgGq~fi~~~lekI~~ 156 (220)
T PRK08883 77 FAKAGASMITFHVEASEHVDRTLQLIKEHGCQAGVVLNPATPLHHLEYIMDKVDLILLMSVNPGFGGQSFIPHTLDKLRA 156 (220)
T ss_pred HHHhCCCEEEEcccCcccHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHhCCeEEEEEecCCCCCceecHhHHHHHHH
Confidence 8999999999998854210 01111 11 123445566667
Q ss_pred HHHHHHHhCCCeEEEEccCCCCCHHHHHHHHhhCCCccEEecCcccccc-hHHHHHHHHHHhhcc
Q 004491 682 IADAAHRINPDAIVLCHGGPISSPSEAEFILKRTKGVHGFYGASSMERL-PVEQAITSTMRQYKS 745 (749)
Q Consensus 682 i~~aa~~~~pdii~l~hGGPi~~p~d~~~~l~~~~~~~Gf~g~Ss~ERl-P~E~ai~~~~~~FK~ 745 (749)
+.+...+.+.++.+.+-|| |+ ++.+..+.+ .++++|+.+|++=+- -.+.++++.-+.+++
T Consensus 157 l~~~~~~~~~~~~I~vdGG-I~-~eni~~l~~--aGAd~vVvGSaIf~~~d~~~~i~~l~~~~~~ 217 (220)
T PRK08883 157 VRKMIDESGRDIRLEIDGG-VK-VDNIREIAE--AGADMFVAGSAIFGQPDYKAVIDEMRAELAK 217 (220)
T ss_pred HHHHHHhcCCCeeEEEECC-CC-HHHHHHHHH--cCCCEEEEeHHHhCCCCHHHHHHHHHHHHHh
Confidence 7666666566777777666 65 999999984 478999999996221 234445544444443
No 211
>PRK08745 ribulose-phosphate 3-epimerase; Provisional
Probab=87.51 E-value=13 Score=39.10 Aligned_cols=168 Identities=17% Similarity=0.206 Sum_probs=102.8
Q ss_pred eEEeeccCCCCCCHHHHHHHHHHcCccceecCCcccccchhhhhhhhhcCCchHHHHHHHHHH-HHcCCcccccccCHH-
Q 004491 562 VLAGVCGTDPFRRVDYFLKQLESIGFFGVQNFPTVGLFDGNFRQNLEETGMGYGLEVEMIDKA-HKMGLLTTPYAFNEG- 639 (749)
Q Consensus 562 ViaGv~atDP~~~~~~~l~~lk~~Gf~GV~NfPTvgliDG~fR~~LEe~G~gy~~EVemi~~A-~~~gl~T~~yvf~~e- 639 (749)
+...+.+.|+ .++.+-+++|++.|.. |=-+=..||+|=-|+ .+|.+ -|+.||+. ...-+=.==-|-|++
T Consensus 6 i~pSil~ad~-~~l~~~i~~l~~~g~d----~lHiDimDG~FVPN~---tfg~~-~i~~lr~~~~~~~~dvHLMv~~P~~ 76 (223)
T PRK08745 6 IAPSILSADF-ARLGEEVDNVLKAGAD----WVHFDVMDNHYVPNL---TIGPM-VCQALRKHGITAPIDVHLMVEPVDR 76 (223)
T ss_pred EEeehhhcCH-HHHHHHHHHHHHcCCC----EEEEecccCccCCCc---ccCHH-HHHHHHhhCCCCCEEEEeccCCHHH
Confidence 3456677776 5788888999998854 334677889998885 33332 34555432 111110111233554
Q ss_pred HHHHHHhccCcEEEeccCCCccc--------ccccc--------ccc-CH-------------------------HHHHH
Q 004491 640 EAVKMAKAGADIIVAHMGLTTSG--------SIGAK--------TAL-SL-------------------------DESVD 677 (749)
Q Consensus 640 qa~~Ma~AGaDiiv~h~GlT~gG--------~~Ga~--------~~~-sl-------------------------~~~~~ 677 (749)
-...+++||||+|+.|.--|.-- ..|.+ |.+ .+ +++.+
T Consensus 77 ~i~~~~~~gad~I~~H~Ea~~~~~~~l~~Ir~~g~k~GlalnP~T~~~~i~~~l~~vD~VlvMtV~PGf~GQ~fi~~~l~ 156 (223)
T PRK08745 77 IVPDFADAGATTISFHPEASRHVHRTIQLIKSHGCQAGLVLNPATPVDILDWVLPELDLVLVMSVNPGFGGQAFIPSALD 156 (223)
T ss_pred HHHHHHHhCCCEEEEcccCcccHHHHHHHHHHCCCceeEEeCCCCCHHHHHHHHhhcCEEEEEEECCCCCCccccHHHHH
Confidence 46788999999999999854221 11211 111 12 23445
Q ss_pred HHHHHHHHHHHhCCCeEEEEccCCCCCHHHHHHHHhhCCCccEEecCcccccchHHHHHHHHHHhhcc
Q 004491 678 RVQAIADAAHRINPDAIVLCHGGPISSPSEAEFILKRTKGVHGFYGASSMERLPVEQAITSTMRQYKS 745 (749)
Q Consensus 678 ~~~~i~~aa~~~~pdii~l~hGGPi~~p~d~~~~l~~~~~~~Gf~g~Ss~ERlP~E~ai~~~~~~FK~ 745 (749)
+++++.+...+.++++.+-+-|| -+++.+..+.+ .+++-|+.||++=.-+ -..+++++||+
T Consensus 157 KI~~l~~~~~~~~~~~~IeVDGG--I~~eti~~l~~--aGaDi~V~GSaiF~~~---d~~~~~~~lr~ 217 (223)
T PRK08745 157 KLRAIRKKIDALGKPIRLEIDGG--VKADNIGAIAA--AGADTFVAGSAIFNAP---DYAQVIAQMRA 217 (223)
T ss_pred HHHHHHHHHHhcCCCeeEEEECC--CCHHHHHHHHH--cCCCEEEEChhhhCCC---CHHHHHHHHHH
Confidence 66666666666677888999999 67888888874 4789999999973211 14444555554
No 212
>PRK14024 phosphoribosyl isomerase A; Provisional
Probab=87.40 E-value=16 Score=38.38 Aligned_cols=192 Identities=18% Similarity=0.205 Sum_probs=106.1
Q ss_pred hhhhhhcCCcEEEEeccccccccCCccccccccccCchHHHHHhhhhhcCCCCCCceEEeeccCCCCCCHHHHHHHHHHc
Q 004491 506 AKFEEAGGVDLIVLYNSGRFRMAGRGSLAGLLPFADANAVVLEMANEVLPVVKEVPVLAGVCGTDPFRRVDYFLKQLESI 585 (749)
Q Consensus 506 Ak~ae~gGaDli~~ynsGrfR~~G~~SlagllpygdaN~iv~e~~~eilp~v~~tPViaGv~atDP~~~~~~~l~~lk~~ 585 (749)
|+.-+..|+|.|.+..--. ..|++ +-++++.++.++ + ++||..|=.-.+ + +=++++.+.
T Consensus 38 a~~~~~~g~~~l~ivDLd~--~~g~~---------~n~~~i~~i~~~----~-~~pv~vgGGirs----~-edv~~~l~~ 96 (241)
T PRK14024 38 ALAWQRDGAEWIHLVDLDA--AFGRG---------SNRELLAEVVGK----L-DVKVELSGGIRD----D-ESLEAALAT 96 (241)
T ss_pred HHHHHHCCCCEEEEEeccc--cCCCC---------ccHHHHHHHHHH----c-CCCEEEcCCCCC----H-HHHHHHHHC
Confidence 4555568999999875321 12332 334666666655 3 589988755443 3 335556667
Q ss_pred CccceecCCcccccc-hhhhhhhhhcCCchHHHHHHHH-HHHHcCCcccccc---cC-HHHHHHHHhccCcEEEeccCCC
Q 004491 586 GFFGVQNFPTVGLFD-GNFRQNLEETGMGYGLEVEMID-KAHKMGLLTTPYA---FN-EGEAVKMAKAGADIIVAHMGLT 659 (749)
Q Consensus 586 Gf~GV~NfPTvgliD-G~fR~~LEe~G~gy~~EVemi~-~A~~~gl~T~~yv---f~-~eqa~~Ma~AGaDiiv~h~GlT 659 (749)
|..-| +.-|..+-| -.+++..++.| ..|-. . -.++.-+.+-.|- .+ .+=++++.++|++-|++| +.|
T Consensus 97 Ga~kv-viGs~~l~~p~l~~~i~~~~~----~~i~v-sld~~~~~v~~~Gw~~~~~~~~~~~~~l~~~G~~~iiv~-~~~ 169 (241)
T PRK14024 97 GCARV-NIGTAALENPEWCARVIAEHG----DRVAV-GLDVRGHTLAARGWTRDGGDLWEVLERLDSAGCSRYVVT-DVT 169 (241)
T ss_pred CCCEE-EECchHhCCHHHHHHHHHHhh----hhEEE-EEEEeccEeccCCeeecCccHHHHHHHHHhcCCCEEEEE-eec
Confidence 87754 334444433 22333333211 00000 0 0000001111111 12 345788889999999999 777
Q ss_pred cccccccccccCHHHHHHHHHHHHHHHHHhCCCeEEEEccCCCCCHHHHHHHHhh-CCCccEEecCccc--ccchHHHHH
Q 004491 660 TSGSIGAKTALSLDESVDRVQAIADAAHRINPDAIVLCHGGPISSPSEAEFILKR-TKGVHGFYGASSM--ERLPVEQAI 736 (749)
Q Consensus 660 ~gG~~Ga~~~~sl~~~~~~~~~i~~aa~~~~pdii~l~hGGPi~~p~d~~~~l~~-~~~~~Gf~g~Ss~--ERlP~E~ai 736 (749)
..|+.. ... .+.++++.+. . ++ -++.+|-|.+++|+..+++- .++++|.+-|+.+ -+++.|.++
T Consensus 170 ~~g~~~---G~d----~~~i~~i~~~---~--~i-pviasGGi~s~~D~~~l~~~~~~GvdgV~igra~~~g~~~~~~~~ 236 (241)
T PRK14024 170 KDGTLT---GPN----LELLREVCAR---T--DA-PVVASGGVSSLDDLRALAELVPLGVEGAIVGKALYAGAFTLPEAL 236 (241)
T ss_pred CCCCcc---CCC----HHHHHHHHhh---C--CC-CEEEeCCCCCHHHHHHHhhhccCCccEEEEeHHHHcCCCCHHHHH
Confidence 777642 223 3333444332 2 33 34446779999999999742 3689999888864 578888876
Q ss_pred HH
Q 004491 737 TS 738 (749)
Q Consensus 737 ~~ 738 (749)
..
T Consensus 237 ~~ 238 (241)
T PRK14024 237 AV 238 (241)
T ss_pred HH
Confidence 54
No 213
>cd00381 IMPDH IMPDH: The catalytic domain of the inosine monophosphate dehydrogenase. IMPDH catalyzes the NAD-dependent oxidation of inosine 5'-monophosphate (IMP) to xanthosine 5' monophosphate (XMP). It is a rate-limiting step in the de novo synthesis of the guanine nucleotides. There is often a CBS domain inserted in the middle of this domain, which is proposed to play a regulatory role. IMPDH is a key enzyme in the regulation of cell proliferation and differentiation. It has been identified as an attractive target for developing chemotherapeutic agents.
Probab=87.29 E-value=15 Score=40.42 Aligned_cols=155 Identities=18% Similarity=0.289 Sum_probs=88.8
Q ss_pred HhhhhhcC-CCCCCceEEeeccCCCCCCHHHHHHHHHHcCccceecCCcccccchhhhhhhhhcCCchHHHHHHHHHHHH
Q 004491 548 EMANEVLP-VVKEVPVLAGVCGTDPFRRVDYFLKQLESIGFFGVQNFPTVGLFDGNFRQNLEETGMGYGLEVEMIDKAHK 626 (749)
Q Consensus 548 e~~~eilp-~v~~tPViaGv~atDP~~~~~~~l~~lk~~Gf~GV~NfPTvgliDG~fR~~LEe~G~gy~~EVemi~~A~~ 626 (749)
++..++.. .--++|++.+=..+ ..-.++-..+.+.|--||.. .-. ..+.-.+++++.++
T Consensus 22 dl~t~l~~~~~l~~Piv~apM~~---vt~~~ma~ava~~GglGvi~--~~~---------------~~~~~~~~i~~vk~ 81 (325)
T cd00381 22 DLSTKLTKNITLNIPLVSAPMDT---VTESEMAIAMARLGGIGVIH--RNM---------------SIEEQAEEVRKVKG 81 (325)
T ss_pred eeeEEecCccccCCCEEecCCCc---CCcHHHHHHHHHCCCEEEEe--CCC---------------CHHHHHHHHHHhcc
Confidence 34444444 22268988763321 23346677788888777742 110 11233456666653
Q ss_pred cCCccccccc-----CHHHHHHHHhccCcEEEeccCCCcccccccccccCHHHHHHHHHHHHHHHHHhCCCeEEEEccCC
Q 004491 627 MGLLTTPYAF-----NEGEAVKMAKAGADIIVAHMGLTTSGSIGAKTALSLDESVDRVQAIADAAHRINPDAIVLCHGGP 701 (749)
Q Consensus 627 ~gl~T~~yvf-----~~eqa~~Ma~AGaDiiv~h~GlT~gG~~Ga~~~~sl~~~~~~~~~i~~aa~~~~pdii~l~hGGP 701 (749)
. +-+.-.+ ..+.++++.++|+|+|++++.. |. . +...+.+++|. +..|++.+++ |-
T Consensus 82 ~--l~v~~~~~~~~~~~~~~~~l~eagv~~I~vd~~~---G~---~-----~~~~~~i~~ik----~~~p~v~Vi~--G~ 142 (325)
T cd00381 82 R--LLVGAAVGTREDDKERAEALVEAGVDVIVIDSAH---GH---S-----VYVIEMIKFIK----KKYPNVDVIA--GN 142 (325)
T ss_pred C--ceEEEecCCChhHHHHHHHHHhcCCCEEEEECCC---CC---c-----HHHHHHHHHHH----HHCCCceEEE--CC
Confidence 3 2222222 2478889999999999987632 11 1 34444445543 3447777776 88
Q ss_pred CCCHHHHHHHHhhCCCccEEe-c---Cc-cccc------chHHHHHHHHHHhh
Q 004491 702 ISSPSEAEFILKRTKGVHGFY-G---AS-SMER------LPVEQAITSTMRQY 743 (749)
Q Consensus 702 i~~p~d~~~~l~~~~~~~Gf~-g---~S-s~ER------lP~E~ai~~~~~~F 743 (749)
+.++++++.+.+ .++|+.. | +| ...| .|.-.+|.+..+.-
T Consensus 143 v~t~~~A~~l~~--aGaD~I~vg~g~G~~~~t~~~~g~g~p~~~~i~~v~~~~ 193 (325)
T cd00381 143 VVTAEAARDLID--AGADGVKVGIGPGSICTTRIVTGVGVPQATAVADVAAAA 193 (325)
T ss_pred CCCHHHHHHHHh--cCCCEEEECCCCCcCcccceeCCCCCCHHHHHHHHHHHH
Confidence 999999999985 4677775 1 22 1222 36556666665543
No 214
>PRK01362 putative translaldolase; Provisional
Probab=87.23 E-value=2.1 Score=44.71 Aligned_cols=115 Identities=14% Similarity=0.215 Sum_probs=80.3
Q ss_pred HHHHHHHHHcCCcccc-cccCHHHHHHHHhccCcEEEeccCCCcccccccccccCHHHHHHHHHHHHHHHHHhCCCeEEE
Q 004491 618 VEMIDKAHKMGLLTTP-YAFNEGEAVKMAKAGADIIVAHMGLTTSGSIGAKTALSLDESVDRVQAIADAAHRINPDAIVL 696 (749)
Q Consensus 618 Vemi~~A~~~gl~T~~-yvf~~eqa~~Ma~AGaDiiv~h~GlT~gG~~Ga~~~~sl~~~~~~~~~i~~aa~~~~pdii~l 696 (749)
++.++.-++.|+-+.. -||+.+||..-++||||.|.+.+|.-.- .-.+..+.++++.+..++.+.+.-+|
T Consensus 91 ~~a~~~L~~~Gi~v~~T~vfs~~Qa~~Aa~aGa~yispyvgRi~d---------~g~dg~~~i~~~~~~~~~~~~~tkil 161 (214)
T PRK01362 91 LKAVKALSKEGIKTNVTLIFSANQALLAAKAGATYVSPFVGRLDD---------IGTDGMELIEDIREIYDNYGFDTEII 161 (214)
T ss_pred HHHHHHHHHCCCceEEeeecCHHHHHHHHhcCCcEEEeecchHhh---------cCCCHHHHHHHHHHHHHHcCCCcEEE
Confidence 6778888888987764 4899999999999999999999996522 12356778888888888888777777
Q ss_pred EccCCCCCHHHHHHHHhhCCCccEE-ecCcccccch----HHHHHHHHHHhhcc
Q 004491 697 CHGGPISSPSEAEFILKRTKGVHGF-YGASSMERLP----VEQAITSTMRQYKS 745 (749)
Q Consensus 697 ~hGGPi~~p~d~~~~l~~~~~~~Gf-~g~Ss~ERlP----~E~ai~~~~~~FK~ 745 (749)
+.-+.+++++..... .+||-+ ++-.-++.+= ++.++.+--+.|++
T Consensus 162 --aAS~r~~~~v~~~~~--~G~d~iTi~~~vl~~l~~~p~t~~~~~~F~~dw~~ 211 (214)
T PRK01362 162 --AASVRHPMHVLEAAL--AGADIATIPYKVIKQLFKHPLTDKGLEKFLADWEK 211 (214)
T ss_pred --EeecCCHHHHHHHHH--cCCCEEecCHHHHHHHHcCCchHHHHHHHHHHHHH
Confidence 456788888877653 467644 3333334332 44444444444443
No 215
>PRK06852 aldolase; Validated
Probab=86.79 E-value=5.6 Score=43.76 Aligned_cols=163 Identities=20% Similarity=0.248 Sum_probs=92.3
Q ss_pred hcCCCCCCceEEeeccC---------CCCCCHHHHHHHHHHcC------cc--ceecCCcccccchhhhhhhhhcCCchH
Q 004491 553 VLPVVKEVPVLAGVCGT---------DPFRRVDYFLKQLESIG------FF--GVQNFPTVGLFDGNFRQNLEETGMGYG 615 (749)
Q Consensus 553 ilp~v~~tPViaGv~at---------DP~~~~~~~l~~lk~~G------f~--GV~NfPTvgliDG~fR~~LEe~G~gy~ 615 (749)
.-+.-+++|+|-=+++. ||+..+-.-.++.-++| -. +++=||- +..-++.|++.+
T Consensus 86 ~~~~~~~~~lIlkl~~~t~l~~~~~~~p~~~l~~sVeeAvrlG~~~~~~AdAV~v~v~~G----s~~E~~ml~~l~---- 157 (304)
T PRK06852 86 YGMDYPDVPYLVKLNSKTNLVKTSQRDPLSRQLLDVEQVVEFKENSGLNILGVGYTIYLG----SEYESEMLSEAA---- 157 (304)
T ss_pred hccccCCCcEEEEECCCCCcCCcccCCccccceecHHHHHhcCCccCCCceEEEEEEecC----CHHHHHHHHHHH----
Confidence 33444578887777774 67554444467777877 33 4444443 223345554432
Q ss_pred HHHHHHHHHHHcCCccccccc--CH-----HH-------HHHHHhccCcEEEeccCCCcccccccccccCHHHHHHHHHH
Q 004491 616 LEVEMIDKAHKMGLLTTPYAF--NE-----GE-------AVKMAKAGADIIVAHMGLTTSGSIGAKTALSLDESVDRVQA 681 (749)
Q Consensus 616 ~EVemi~~A~~~gl~T~~yvf--~~-----eq-------a~~Ma~AGaDiiv~h~GlT~gG~~Ga~~~~sl~~~~~~~~~ 681 (749)
+..++|++.||..+..+| -+ .+ ||.-+|-|||||=...-...++ . + .+...+
T Consensus 158 ---~v~~ea~~~GlPll~~~yprG~~i~~~~~~~~ia~aaRiaaELGADIVKv~y~~~~~~----g---~----~e~f~~ 223 (304)
T PRK06852 158 ---QIIYEAHKHGLIAVLWIYPRGKAVKDEKDPHLIAGAAGVAACLGADFVKVNYPKKEGA----N---P----AELFKE 223 (304)
T ss_pred ---HHHHHHHHhCCcEEEEeeccCcccCCCccHHHHHHHHHHHHHHcCCEEEecCCCcCCC----C---C----HHHHHH
Confidence 566899999999996443 21 12 4556799999997765322221 0 0 122222
Q ss_pred HHHHHHHhCCCeEEEEccCCCCCHHHHHHHHhhC---CCccEEecC-ccccc-----chHHHHHHHHHH
Q 004491 682 IADAAHRINPDAIVLCHGGPISSPSEAEFILKRT---KGVHGFYGA-SSMER-----LPVEQAITSTMR 741 (749)
Q Consensus 682 i~~aa~~~~pdii~l~hGGPi~~p~d~~~~l~~~---~~~~Gf~g~-Ss~ER-----lP~E~ai~~~~~ 741 (749)
+.++ ..-+.|+|-|||=.+.+|+-.+.+.. .+..|-.=| ..|-| ...=+||...+.
T Consensus 224 vv~~----~g~vpVviaGG~k~~~~e~L~~v~~ai~~aGa~Gv~~GRNIfQ~~~p~~~~~~~Ai~~IVH 288 (304)
T PRK06852 224 AVLA----AGRTKVVCAGGSSTDPEEFLKQLYEQIHISGASGNATGRNIHQKPLDEAVRMCNAIYAITV 288 (304)
T ss_pred HHHh----CCCCcEEEeCCCCCCHHHHHHHHHHHHHHcCCceeeechhhhcCCCchHHHHHHHHHHHHh
Confidence 3332 22267999999998887776665432 355554333 33333 333355655554
No 216
>cd04735 OYE_like_4_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 4. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=86.69 E-value=3.9 Score=45.18 Aligned_cols=133 Identities=17% Similarity=0.220 Sum_probs=69.5
Q ss_pred HHHHHcCcccee-cC-----------CcccccchhhhhhhhhcCCchHHHH-HHHHHHHH----cCCccccccc------
Q 004491 580 KQLESIGFFGVQ-NF-----------PTVGLFDGNFRQNLEETGMGYGLEV-EMIDKAHK----MGLLTTPYAF------ 636 (749)
Q Consensus 580 ~~lk~~Gf~GV~-Nf-----------PTvgliDG~fR~~LEe~G~gy~~EV-emi~~A~~----~gl~T~~yvf------ 636 (749)
++.++.||.||+ |. |..=--..+|.-.|| .-+=|-+|| +.||+|-- .++ .+.+=.
T Consensus 151 ~~a~~aGfDgVeih~ahGyLl~qFlsp~~N~R~D~yGGsle-nR~r~~~eii~~vr~~vg~~~~~~~-~v~~R~s~~~~~ 228 (353)
T cd04735 151 RRAIEAGFDGVEIHGANGYLIQQFFSPHSNRRTDEWGGSLE-NRMRFPLAVVKAVQEVIDKHADKDF-ILGYRFSPEEPE 228 (353)
T ss_pred HHHHHcCCCEEEEccccchHHHHhcCCccCCCCcccCCcHH-HHHHHHHHHHHHHHHHhccccCCCc-eEEEEECccccc
Confidence 357789999996 54 544332222333332 223355553 56666643 222 233222
Q ss_pred ----CHHHH----HHHHhccCcEEEeccCCCcccccccccccCHHHHHHHHHHHHHHHHHhCCCeEEEEccCCCCCHHHH
Q 004491 637 ----NEGEA----VKMAKAGADIIVAHMGLTTSGSIGAKTALSLDESVDRVQAIADAAHRINPDAIVLCHGGPISSPSEA 708 (749)
Q Consensus 637 ----~~eqa----~~Ma~AGaDiiv~h~GlT~gG~~Ga~~~~sl~~~~~~~~~i~~aa~~~~pdii~l~hGGPi~~p~d~ 708 (749)
+.+|. +.+.++|+|.|.+|.|.-+. ....... . -...+++|.++ +.+++-|++-| -|.+|+++
T Consensus 229 ~~g~~~ee~~~i~~~L~~~GvD~I~Vs~g~~~~-~~~~~~~-~---~~~~~~~ik~~---~~~~iPVi~~G-gi~t~e~a 299 (353)
T cd04735 229 EPGIRMEDTLALVDKLADKGLDYLHISLWDFDR-KSRRGRD-D---NQTIMELVKER---IAGRLPLIAVG-SINTPDDA 299 (353)
T ss_pred CCCCCHHHHHHHHHHHHHcCCCEEEeccCcccc-ccccCCc-c---hHHHHHHHHHH---hCCCCCEEEEC-CCCCHHHH
Confidence 23444 45568999999999874322 1110111 0 12222333222 23455555554 59999999
Q ss_pred HHHHhhCCCccEEecCc
Q 004491 709 EFILKRTKGVHGFYGAS 725 (749)
Q Consensus 709 ~~~l~~~~~~~Gf~g~S 725 (749)
+.+++. ++|..--+.
T Consensus 300 e~~l~~--gaD~V~~gR 314 (353)
T cd04735 300 LEALET--GADLVAIGR 314 (353)
T ss_pred HHHHHc--CCChHHHhH
Confidence 999976 466544333
No 217
>TIGR03239 GarL 2-dehydro-3-deoxyglucarate aldolase. In E. coli this enzyme (GarL, ) 2-dehydro-3-deoxyglucarate aldolase acts in the catabolism of several sugars including D-galactarate, D-glucarate and L-idarate. In fact, 5-dehydro-4-deoxy-D-glucarate aldolase is a synonym for this enzyme as it is unclear in the literature whether the enzyme acts on only one of these or, as seems likely, has no preference. (Despite the apparent large difference in substrate stucture indicated by their names, 2-DH-3DO- and 5-DH-4DO-glucarate differ only by the chirality of most central hydroxyl-bearing carbon and is alternately named 2-DH-3DO-galactarate.) The reported product of D-galactarate dehydratase (4.2.1.42) is the 5DH-4DO-glucarate isomer and this enzyme is found proximal to the aldolase in many genomes (GenProp0714) where no epimerase is known. Similarly, the product of D-glucarate dehydratase (4.2.1.40) is again the 5-DH-4DO isomer, so the provenance of the 2-DH-3DO-glucarate isomer for which
Probab=86.68 E-value=24 Score=37.53 Aligned_cols=222 Identities=14% Similarity=0.188 Sum_probs=126.5
Q ss_pred HHHHHhhcCCCeEE--eccccchhhhhhhhcCCcEEEEeccccccccCCccccccccccCchHHHHHhhhhhcCCCCCCc
Q 004491 484 KLKYQIDKGLPIIG--AGAGTGISAKFEEAGGVDLIVLYNSGRFRMAGRGSLAGLLPFADANAVVLEMANEVLPVVKEVP 561 (749)
Q Consensus 484 ~L~~~i~~~~piig--~gaGtGlsAk~ae~gGaDli~~ynsGrfR~~G~~SlagllpygdaN~iv~e~~~eilp~v~~tP 561 (749)
+||+++++|+|++| .-.++-..+......|-||+++=.- +| .+-+.+..+++...-. ..++
T Consensus 2 ~lk~~l~~g~~~~G~~~~~~sp~~~e~~a~~G~D~v~iD~E-------Hg----~~~~~~~~~~~~a~~~------~g~~ 64 (249)
T TIGR03239 2 RFRQDLLARETLIGCWSALGNPITTEVLGLAGFDWLLLDGE-------HA----PNDVLTFIPQLMALKG------SASA 64 (249)
T ss_pred hHHHHHHcCCceEEEEEcCCCcHHHHHHHhcCCCEEEEecc-------cC----CCCHHHHHHHHHHHhh------cCCC
Confidence 58999999999999 4567778888888999999998421 11 1122333333332211 1234
Q ss_pred eEEeeccCCCCCCHHHHHHHHHHcCcccee-----------------cCCccccc--chhhhhhhhhcCCchHHHHHHHH
Q 004491 562 VLAGVCGTDPFRRVDYFLKQLESIGFFGVQ-----------------NFPTVGLF--DGNFRQNLEETGMGYGLEVEMID 622 (749)
Q Consensus 562 ViaGv~atDP~~~~~~~l~~lk~~Gf~GV~-----------------NfPTvgli--DG~fR~~LEe~G~gy~~EVemi~ 622 (749)
+|.=|...|| ..+++..+.|+.||. -||..|.- .+..|. .++| .--+.++
T Consensus 65 ~~VRvp~~~~-----~~i~r~LD~Ga~gIivP~v~taeea~~~v~a~kypP~G~Rg~~~~~r~----~~y~--~~~~y~~ 133 (249)
T TIGR03239 65 PVVRPPWNEP-----VIIKRLLDIGFYNFLIPFVESAEEAERAVAATRYPPEGIRGVSVSHRS----NRYG--TVPDYFA 133 (249)
T ss_pred cEEECCCCCH-----HHHHHHhcCCCCEEEecCcCCHHHHHHHHHHcCCCCCCcCCCCcchhh----hccC--ChHHHHH
Confidence 4444444453 567888899999984 46666632 122222 2333 2236777
Q ss_pred HHHHcCCcccccccCH---HHHHHHHh-ccCcEEEeccCCCcccccccccccCHHHHHHHHHHHHHHHHHhCCCeEEEEc
Q 004491 623 KAHKMGLLTTPYAFNE---GEAVKMAK-AGADIIVAHMGLTTSGSIGAKTALSLDESVDRVQAIADAAHRINPDAIVLCH 698 (749)
Q Consensus 623 ~A~~~gl~T~~yvf~~---eqa~~Ma~-AGaDiiv~h~GlT~gG~~Ga~~~~sl~~~~~~~~~i~~aa~~~~pdii~l~h 698 (749)
.|.+. .+.++-+=++ +.+.++++ -|+|.+..-.+ --.-++|......-.+..+.++++.++|++.+..+-+
T Consensus 134 ~~n~~-~~vi~~IEt~~av~n~~eI~av~gvd~l~iG~~-DLs~slG~~~~~~~~~v~~a~~~v~~aa~a~G~~~g~--- 208 (249)
T TIGR03239 134 TINDN-ITVLVQIESQKGVDNVDEIAAVDGVDGIFVGPS-DLAAALGHLGNPNHPDVQKAIRHIFDRAAAHGKPCGI--- 208 (249)
T ss_pred Hhccc-cEEEEEECCHHHHHhHHHHhCCCCCCEEEEChH-HHHHHcCCCCCCCCHHHHHHHHHHHHHHHHcCCCEEE---
Confidence 77654 4455544333 33344443 46776654321 0012233322223245566678999999999886532
Q ss_pred cCCCCCHHHHHHHHhhCCCccEEecCcccccchHHHHHHHHHHhhc
Q 004491 699 GGPISSPSEAEFILKRTKGVHGFYGASSMERLPVEQAITSTMRQYK 744 (749)
Q Consensus 699 GGPi~~p~d~~~~l~~~~~~~Gf~g~Ss~ERlP~E~ai~~~~~~FK 744 (749)
...+|++++..+++ ++. |+.. +.|..=.-++.++.+.+||
T Consensus 209 --~~~~~~~~~~~~~~--G~~-~~~~-~~D~~~l~~~~~~~~~~~~ 248 (249)
T TIGR03239 209 --LAPVEADARRYLEW--GAT-FVAV-GSDLGVFRSATQALRDKFK 248 (249)
T ss_pred --cCCCHHHHHHHHHc--CCC-EEEE-hHHHHHHHHHHHHHHHHhh
Confidence 23588999999865 443 3322 2233444566666666665
No 218
>TIGR03217 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase. Members of this protein family are 4-hydroxy-2-oxovalerate aldolase, also called 4-hydroxy-2-ketovalerate aldolase and 2-oxo-4-hydroxypentanoate aldolase. This enzyme, part of the pathway for the meta-cleavage of catechol, produces pyruvate and acetaldehyde. Acetaldehyde is then converted by acetaldehyde dehydrogenase (acylating) (DmpF; EC 1.2.1.10) to acetyl-CoA. The two enzymes are tightly associated.
Probab=86.64 E-value=21 Score=39.51 Aligned_cols=168 Identities=22% Similarity=0.194 Sum_probs=99.4
Q ss_pred ccccHHHHHHHHHHHhhcCCCeEEeccccchhhhhhhhcCCcEEEEeccccccccCCccccccccccCchHHHHHhhhhh
Q 004491 474 TLQRTQAILSKLKYQIDKGLPIIGAGAGTGISAKFEEAGGVDLIVLYNSGRFRMAGRGSLAGLLPFADANAVVLEMANEV 553 (749)
Q Consensus 474 ~~~~r~~il~~L~~~i~~~~piig~gaGtGlsAk~ae~gGaDli~~ynsGrfR~~G~~SlagllpygdaN~iv~e~~~ei 553 (749)
.-++.+++++-++.-.+.|-++|=+|-|.|+-+ ..| |.|. ..+. -+|..+++
T Consensus 19 ~~f~~~~~~~ia~~Ld~aGV~~IEvg~g~gl~g-------~s~----~~G~------------~~~~-----~~e~i~~~ 70 (333)
T TIGR03217 19 HQFTIEQVRAIAAALDEAGVDAIEVTHGDGLGG-------SSF----NYGF------------SAHT-----DLEYIEAA 70 (333)
T ss_pred CcCCHHHHHHHHHHHHHcCCCEEEEecCCCCCC-------ccc----cCCC------------CCCC-----hHHHHHHH
Confidence 346677788777777777777776666655421 111 2221 1111 23556777
Q ss_pred cCCCCCCceEEeeccCCCCCCHHHHHHHHHHcCccceecCCcccccchhhhhhhhhcCCchHHHHHHHHHHHHcCCcccc
Q 004491 554 LPVVKEVPVLAGVCGTDPFRRVDYFLKQLESIGFFGVQNFPTVGLFDGNFRQNLEETGMGYGLEVEMIDKAHKMGLLTTP 633 (749)
Q Consensus 554 lp~v~~tPViaGv~atDP~~~~~~~l~~lk~~Gf~GV~NfPTvgliDG~fR~~LEe~G~gy~~EVemi~~A~~~gl~T~~ 633 (749)
.+.++++.+.+-+ +|=+--.+.++...+.|...|. +.|- +.+. +.=.+.|+.|+++|+.+..
T Consensus 71 ~~~~~~~~~~~ll---~pg~~~~~dl~~a~~~gvd~ir-i~~~----------~~e~----d~~~~~i~~ak~~G~~v~~ 132 (333)
T TIGR03217 71 ADVVKRAKVAVLL---LPGIGTVHDLKAAYDAGARTVR-VATH----------CTEA----DVSEQHIGMARELGMDTVG 132 (333)
T ss_pred HHhCCCCEEEEEe---ccCccCHHHHHHHHHCCCCEEE-EEec----------cchH----HHHHHHHHHHHHcCCeEEE
Confidence 7777776544333 3322224568999999987654 3321 1111 1234889999999987654
Q ss_pred c-----ccC----HHHHHHHHhccCcEEEeccCCCcccccccccccCHHHHHHHHHHHHHHHHHhCCCeEEEEcc
Q 004491 634 Y-----AFN----EGEAVKMAKAGADIIVAHMGLTTSGSIGAKTALSLDESVDRVQAIADAAHRINPDAIVLCHG 699 (749)
Q Consensus 634 y-----vf~----~eqa~~Ma~AGaDiiv~h~GlT~gG~~Ga~~~~sl~~~~~~~~~i~~aa~~~~pdii~l~hG 699 (749)
+ ..+ .+++++|.++|||.|++ -=|.| ..+-++..++++.+.+ ..+|++-+=+|+
T Consensus 133 ~l~~s~~~~~e~l~~~a~~~~~~Ga~~i~i--~DT~G-------~~~P~~v~~~v~~l~~---~l~~~i~ig~H~ 195 (333)
T TIGR03217 133 FLMMSHMTPPEKLAEQAKLMESYGADCVYI--VDSAG-------AMLPDDVRDRVRALKA---VLKPETQVGFHA 195 (333)
T ss_pred EEEcccCCCHHHHHHHHHHHHhcCCCEEEE--ccCCC-------CCCHHHHHHHHHHHHH---hCCCCceEEEEe
Confidence 3 344 46788899999998765 22222 3456666666665543 345677666776
No 219
>PRK14040 oxaloacetate decarboxylase; Provisional
Probab=86.48 E-value=15 Score=43.93 Aligned_cols=148 Identities=17% Similarity=0.185 Sum_probs=94.7
Q ss_pred hhhhhhhcCCcEEEEeccccccccCCccccccccccCchHHHHHhhhhhcCCCCCCceEE---e--eccCCCCCC--HHH
Q 004491 505 SAKFEEAGGVDLIVLYNSGRFRMAGRGSLAGLLPFADANAVVLEMANEVLPVVKEVPVLA---G--VCGTDPFRR--VDY 577 (749)
Q Consensus 505 sAk~ae~gGaDli~~ynsGrfR~~G~~SlagllpygdaN~iv~e~~~eilp~v~~tPVia---G--v~atDP~~~--~~~ 577 (749)
.|+...+.|.+-|=+ -|-..+-.-+||-+-++ .|.-+++-..++++|+-. | +.++.+|-+ ++.
T Consensus 32 ia~~ld~~G~~siE~--------~GGatf~~~~~~~~e~p--~e~lr~l~~~~~~~~lqml~Rg~n~vg~~~ypddvv~~ 101 (593)
T PRK14040 32 IAAKLDKVGYWSLES--------WGGATFDACIRFLGEDP--WERLRELKKAMPNTPQQMLLRGQNLLGYRHYADDVVER 101 (593)
T ss_pred HHHHHHHcCCCEEEe--------cCCcchhhhccccCCCH--HHHHHHHHHhCCCCeEEEEecCcceeccccCcHHHHHH
Confidence 455556667777665 22233444566766565 444555555566788633 3 344555543 589
Q ss_pred HHHHHHHcCccceecCCcccccchhhhhhhhhcCCchHHHHHHHHHHHHcCCc---ccccccCH--------HHHHHHHh
Q 004491 578 FLKQLESIGFFGVQNFPTVGLFDGNFRQNLEETGMGYGLEVEMIDKAHKMGLL---TTPYAFNE--------GEAVKMAK 646 (749)
Q Consensus 578 ~l~~lk~~Gf~GV~NfPTvgliDG~fR~~LEe~G~gy~~EVemi~~A~~~gl~---T~~yvf~~--------eqa~~Ma~ 646 (749)
|++...+.|..-|-.|-.+.-+ +++ .+.|+.|++.|+. ++.|.+++ +-++++.+
T Consensus 102 ~v~~a~~~Gid~~rifd~lnd~-----~~~----------~~ai~~ak~~G~~~~~~i~yt~~p~~~~~~~~~~a~~l~~ 166 (593)
T PRK14040 102 FVERAVKNGMDVFRVFDAMNDP-----RNL----------ETALKAVRKVGAHAQGTLSYTTSPVHTLQTWVDLAKQLED 166 (593)
T ss_pred HHHHHHhcCCCEEEEeeeCCcH-----HHH----------HHHHHHHHHcCCeEEEEEEEeeCCccCHHHHHHHHHHHHH
Confidence 9999999999999999533332 122 3468999999996 56676666 66889999
Q ss_pred ccCcEEEeccCCCcccccccccccCHHHHHHHHHHHHHHH
Q 004491 647 AGADIIVAHMGLTTSGSIGAKTALSLDESVDRVQAIADAA 686 (749)
Q Consensus 647 AGaDiiv~h~GlT~gG~~Ga~~~~sl~~~~~~~~~i~~aa 686 (749)
+|||+||+= =|.| ..+-+++.++++++.++.
T Consensus 167 ~Gad~i~i~--Dt~G-------~l~P~~~~~lv~~lk~~~ 197 (593)
T PRK14040 167 MGVDSLCIK--DMAG-------LLKPYAAYELVSRIKKRV 197 (593)
T ss_pred cCCCEEEEC--CCCC-------CcCHHHHHHHHHHHHHhc
Confidence 999999862 1112 245666666667665443
No 220
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=86.46 E-value=2.7 Score=48.85 Aligned_cols=140 Identities=19% Similarity=0.143 Sum_probs=80.2
Q ss_pred eEEe-eccCCCCCCHHHHHHHHHHcCcccee-cCCcccccchhhhhhhhhcCCchHHHHHHHHHHHHc--CCccc-cccc
Q 004491 562 VLAG-VCGTDPFRRVDYFLKQLESIGFFGVQ-NFPTVGLFDGNFRQNLEETGMGYGLEVEMIDKAHKM--GLLTT-PYAF 636 (749)
Q Consensus 562 ViaG-v~atDP~~~~~~~l~~lk~~Gf~GV~-NfPTvgliDG~fR~~LEe~G~gy~~EVemi~~A~~~--gl~T~-~yvf 636 (749)
++.| .-+..| +.....+.|.+.|..=|. |.. +|+-.. -+|+|++-++. ++.-+ .-|.
T Consensus 230 L~Vgaavg~~~--~~~~~~~~l~~ag~d~i~id~a-----~G~s~~-----------~~~~i~~ik~~~~~~~v~aG~V~ 291 (495)
T PTZ00314 230 LLVGAAISTRP--EDIERAAALIEAGVDVLVVDSS-----QGNSIY-----------QIDMIKKLKSNYPHVDIIAGNVV 291 (495)
T ss_pred EEEEEEECCCH--HHHHHHHHHHHCCCCEEEEecC-----CCCchH-----------HHHHHHHHHhhCCCceEEECCcC
Confidence 4444 333334 336778888888865443 221 222211 15677777776 33333 3799
Q ss_pred CHHHHHHHHhccCcEEEeccC--CCcccccccccccCHHHHHHHHHHHHHHHHHhCCCeEEEEccCCCCCHHHHHHHHhh
Q 004491 637 NEGEAVKMAKAGADIIVAHMG--LTTSGSIGAKTALSLDESVDRVQAIADAAHRINPDAIVLCHGGPISSPSEAEFILKR 714 (749)
Q Consensus 637 ~~eqa~~Ma~AGaDiiv~h~G--lT~gG~~Ga~~~~sl~~~~~~~~~i~~aa~~~~pdii~l~hGGPi~~p~d~~~~l~~ 714 (749)
|.++|+.+.+||||.|.+-+| -+....+-+.....- ...+.++.+++++. ++-+++-|| |.+|.|+..-+..
T Consensus 292 t~~~a~~~~~aGad~I~vg~g~Gs~~~t~~~~~~g~p~---~~ai~~~~~~~~~~--~v~vIadGG-i~~~~di~kAla~ 365 (495)
T PTZ00314 292 TADQAKNLIDAGADGLRIGMGSGSICITQEVCAVGRPQ---ASAVYHVARYARER--GVPCIADGG-IKNSGDICKALAL 365 (495)
T ss_pred CHHHHHHHHHcCCCEEEECCcCCcccccchhccCCCCh---HHHHHHHHHHHhhc--CCeEEecCC-CCCHHHHHHHHHc
Confidence 999999999999999986333 221111000000111 11223333444443 356666665 9999999999854
Q ss_pred CCCccEEecCccc
Q 004491 715 TKGVHGFYGASSM 727 (749)
Q Consensus 715 ~~~~~Gf~g~Ss~ 727 (749)
++++-.-||.|
T Consensus 366 --GA~~Vm~G~~~ 376 (495)
T PTZ00314 366 --GADCVMLGSLL 376 (495)
T ss_pred --CCCEEEECchh
Confidence 66787777776
No 221
>PLN02535 glycolate oxidase
Probab=86.29 E-value=25 Score=39.66 Aligned_cols=172 Identities=17% Similarity=0.273 Sum_probs=93.0
Q ss_pred hhhhhhhhcCCcEEEEeccccccccCCccccccccccCchHHHHHhhhhhcCCCCCCceEEeeccCCCCCCHHHHHHHHH
Q 004491 504 ISAKFEEAGGVDLIVLYNSGRFRMAGRGSLAGLLPFADANAVVLEMANEVLPVVKEVPVLAGVCGTDPFRRVDYFLKQLE 583 (749)
Q Consensus 504 lsAk~ae~gGaDli~~ynsGrfR~~G~~SlagllpygdaN~iv~e~~~eilp~v~~tPViaGv~atDP~~~~~~~l~~lk 583 (749)
.+||.|.+.|+=+++--. ||.-+.|.+.+ .+.|.+|=+.-..--.....+|++-+
T Consensus 93 a~AraA~~~g~~~~lSt~--------------------s~~slEeva~~-----~~~~~wfQlY~~~dr~~~~~ll~RA~ 147 (364)
T PLN02535 93 ATARAAAACNTIMVLSFM--------------------ASCTVEEVASS-----CNAVRFLQLYVYKRRDIAAQLVQRAE 147 (364)
T ss_pred HHHHHHHHcCCCeEecCc--------------------ccCCHHHHHhc-----CCCCeEEEEeccCCHHHHHHHHHHHH
Confidence 368999999998887221 23333444432 23567777665443345677888888
Q ss_pred HcCccceec---CCcccccchhhh--------hhhhh---------cCCc---h-------HHHHHHHHHHHHcCCcccc
Q 004491 584 SIGFFGVQN---FPTVGLFDGNFR--------QNLEE---------TGMG---Y-------GLEVEMIDKAHKMGLLTTP 633 (749)
Q Consensus 584 ~~Gf~GV~N---fPTvgliDG~fR--------~~LEe---------~G~g---y-------~~EVemi~~A~~~gl~T~~ 633 (749)
+.||..+.= -|..|-=.=..| .++.. .+-+ | ..--+.|+.-++ ....|
T Consensus 148 ~aG~~alvlTvD~p~~g~R~~d~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tW~~i~~lr~--~~~~P 225 (364)
T PLN02535 148 KNGYKAIVLTADVPRLGRREADIKNKMISPQLKNFEGLLSTEVVSDKGSGLEAFASETFDASLSWKDIEWLRS--ITNLP 225 (364)
T ss_pred HcCCCEEEEeecCCCCCCchhhhhcCCCCcchhhHhhhhccCCCccccccHHHHHHhccCCCCCHHHHHHHHh--ccCCC
Confidence 888876531 122211100000 00100 0011 0 111234444443 22334
Q ss_pred c----ccCHHHHHHHHhccCcEEEe-ccCCCcccccccccccCHHHHHHHHHHHHHHHHHhCCCeEEEEccCCCCCHHHH
Q 004491 634 Y----AFNEGEAVKMAKAGADIIVA-HMGLTTSGSIGAKTALSLDESVDRVQAIADAAHRINPDAIVLCHGGPISSPSEA 708 (749)
Q Consensus 634 y----vf~~eqa~~Ma~AGaDiiv~-h~GlT~gG~~Ga~~~~sl~~~~~~~~~i~~aa~~~~pdii~l~hGGPi~~p~d~ 708 (749)
. |.++++|+...++|+|.|++ +-| |. . ++-....++.+.+..+++.+++-|++-|| |.++.|+
T Consensus 226 vivKgV~~~~dA~~a~~~GvD~I~vsn~G----Gr---~----~d~~~~t~~~L~ev~~av~~~ipVi~dGG-Ir~g~Dv 293 (364)
T PLN02535 226 ILIKGVLTREDAIKAVEVGVAGIIVSNHG----AR---Q----LDYSPATISVLEEVVQAVGGRVPVLLDGG-VRRGTDV 293 (364)
T ss_pred EEEecCCCHHHHHHHHhcCCCEEEEeCCC----cC---C----CCCChHHHHHHHHHHHHHhcCCCEEeeCC-CCCHHHH
Confidence 3 47899999999999999866 222 21 1 11112223444444555556666777776 9999999
Q ss_pred HHHHhh
Q 004491 709 EFILKR 714 (749)
Q Consensus 709 ~~~l~~ 714 (749)
...|.-
T Consensus 294 ~KALal 299 (364)
T PLN02535 294 FKALAL 299 (364)
T ss_pred HHHHHc
Confidence 888854
No 222
>COG1082 IolE Sugar phosphate isomerases/epimerases [Carbohydrate transport and metabolism]
Probab=86.21 E-value=10 Score=39.00 Aligned_cols=130 Identities=18% Similarity=0.302 Sum_probs=81.3
Q ss_pred CCCCHHHHHHHHHHcCccceecCC-cccccc----hhhhhhhhhcCCchHHHHHHHHHHHHcCCccccccc---CHHH--
Q 004491 571 PFRRVDYFLKQLESIGFFGVQNFP-TVGLFD----GNFRQNLEETGMGYGLEVEMIDKAHKMGLLTTPYAF---NEGE-- 640 (749)
Q Consensus 571 P~~~~~~~l~~lk~~Gf~GV~NfP-TvgliD----G~fR~~LEe~G~gy~~EVemi~~A~~~gl~T~~yvf---~~eq-- 640 (749)
+...++..++.++++||.||.=+| ..-.-+ ..+++.|++.|+.+.. ..+|.. +.++
T Consensus 13 ~~~~l~~~l~~~~~~G~~gvEi~~~~~~~~~~~~~~~l~~~l~~~gl~i~~--------------~~~~~~~~~~~~~~~ 78 (274)
T COG1082 13 GELPLEEILRKAAELGFDGVELSPGDLFPADYKELAELKELLADYGLEITS--------------LAPFSNNLLSPDEEE 78 (274)
T ss_pred CCCCHHHHHHHHHHhCCCeEecCCcccCCchhhhHHHHHHHHHHcCcEEEe--------------ecccCCCcCCCchhh
Confidence 778899999999999999999886 111111 4445555444443211 012221 2222
Q ss_pred ----------HHH-HHhccCcEEEeccCCCcccccccccccCHHHHHHHHHHHHHHHHHhCCCeEEEE--c-cCCCCCHH
Q 004491 641 ----------AVK-MAKAGADIIVAHMGLTTSGSIGAKTALSLDESVDRVQAIADAAHRINPDAIVLC--H-GGPISSPS 706 (749)
Q Consensus 641 ----------a~~-Ma~AGaDiiv~h~GlT~gG~~Ga~~~~sl~~~~~~~~~i~~aa~~~~pdii~l~--h-GGPi~~p~ 706 (749)
+.. +.+.|++.++.|.|...+......+...-+...+.+.++.+-|.+.+-.+-+-- | |.-+.++.
T Consensus 79 ~~~~~~~~~~~i~~a~~lg~~~vv~~~g~~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~~i~l~~e~~~~~~~~~~~~~ 158 (274)
T COG1082 79 REEALEELKRAIELAKELGAKVVVVHPGLGAGADDPDSPEEARERWAEALEELAEIAEELGIGLALENHHHPGNVVETGA 158 (274)
T ss_pred HHHHHHHHHHHHHHHHHcCCCeEEeecccCCcCCCCCCCcccHHHHHHHHHHHHHHHHHhCCceEEeecCCccceeecCH
Confidence 333 568899999999998877766432233336677888888888888855444444 3 44588887
Q ss_pred HHHHHHhh
Q 004491 707 EAEFILKR 714 (749)
Q Consensus 707 d~~~~l~~ 714 (749)
+...++..
T Consensus 159 ~~~~~~~~ 166 (274)
T COG1082 159 DALDLLRE 166 (274)
T ss_pred HHHHHHHh
Confidence 55555544
No 223
>cd06557 KPHMT-like Ketopantoate hydroxymethyltransferase (KPHMT) is the first enzyme in the pantothenate biosynthesis pathway. Ketopantoate hydroxymethyltransferase (KPHMT) catalyzes the first committed step in the biosynthesis of pantothenate (vitamin B5), which is a precursor to coenzyme A and is required for penicillin biosynthesis.
Probab=86.04 E-value=3.2 Score=44.48 Aligned_cols=97 Identities=25% Similarity=0.352 Sum_probs=69.9
Q ss_pred HHHHHHH-cCCcccccccCHHHHHHHHhccCcEEEeccCCCcc-ccccccc--ccCHHHHHHHHHHHHHHHHHhCCCeEE
Q 004491 620 MIDKAHK-MGLLTTPYAFNEGEAVKMAKAGADIIVAHMGLTTS-GSIGAKT--ALSLDESVDRVQAIADAAHRINPDAIV 695 (749)
Q Consensus 620 mi~~A~~-~gl~T~~yvf~~eqa~~Ma~AGaDiiv~h~GlT~g-G~~Ga~~--~~sl~~~~~~~~~i~~aa~~~~pdii~ 695 (749)
-+|..|+ ...+++|-+||.-.|+...+||.|+|. .|-..+ -.+|..+ .+|+++.+..++.|.+++ +..++
T Consensus 3 ~lr~l~~~~~~l~~~~ayD~~sA~l~e~aG~d~i~--vGds~~~~~lG~pDt~~vtl~em~~~~~~V~r~~----~~p~v 76 (254)
T cd06557 3 DLQKMKKAGEKIVMLTAYDYPTAKLADEAGVDVIL--VGDSLGMVVLGYDSTLPVTLDEMIYHTRAVRRGA----PRALV 76 (254)
T ss_pred hHHHHHhCCCcEEEEeCCCHHHHHHHHHcCCCEEE--ECHHHHHHHcCCCCCCCcCHHHHHHHHHHHHhcC----CCCeE
Confidence 4666666 579999999999999999999999996 452222 2245533 579999999999997766 22333
Q ss_pred EE---ccCCCCCHHHH----HHHHhhCCCccEEec
Q 004491 696 LC---HGGPISSPSEA----EFILKRTKGVHGFYG 723 (749)
Q Consensus 696 l~---hGGPi~~p~d~----~~~l~~~~~~~Gf~g 723 (749)
.+ +|+.-++|+++ ..++++ .+++|..=
T Consensus 77 iaD~~fg~y~~~~~~av~~a~r~~~~-aGa~aVki 110 (254)
T cd06557 77 VADMPFGSYQTSPEQALRNAARLMKE-AGADAVKL 110 (254)
T ss_pred EEeCCCCcccCCHHHHHHHHHHHHHH-hCCeEEEE
Confidence 33 47777888885 557776 66777543
No 224
>cd02811 IDI-2_FMN Isopentenyl-diphosphate:dimethylallyl diphosphate isomerase type 2 (IDI-2) FMN-binding domain. Two types of IDIs have been characterized at present. The long known IDI-1 is only dependent on divalent metals for activity, whereas IDI-2 requires a metal, FMN and NADPH. IDI-2 catalyzes the interconversion of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP) in the mevalonate pathway.
Probab=86.01 E-value=10 Score=41.62 Aligned_cols=151 Identities=17% Similarity=0.163 Sum_probs=82.3
Q ss_pred CCceEEeeccCCC-CCCHHHHHHHHHHcCcccee-cCC---cccccchhhhhhhhhcCCchHHHHHHHHHHHHc-CC--c
Q 004491 559 EVPVLAGVCGTDP-FRRVDYFLKQLESIGFFGVQ-NFP---TVGLFDGNFRQNLEETGMGYGLEVEMIDKAHKM-GL--L 630 (749)
Q Consensus 559 ~tPViaGv~atDP-~~~~~~~l~~lk~~Gf~GV~-NfP---TvgliDG~fR~~LEe~G~gy~~EVemi~~A~~~-gl--~ 630 (749)
+.|+++=+++..+ -.+.+.+.+.++.++-..++ |+. ....-.| .--|+.=++.|+..++. ++ .
T Consensus 112 ~~p~~~Nl~~~~~~~~~~~~~~~~i~~~~adalel~l~~~q~~~~~~~---------~~df~~~~~~i~~l~~~~~vPVi 182 (326)
T cd02811 112 NGPLIANLGAVQLNGYGVEEARRAVEMIEADALAIHLNPLQEAVQPEG---------DRDFRGWLERIEELVKALSVPVI 182 (326)
T ss_pred CceEEeecCccccCCCCHHHHHHHHHhcCCCcEEEeCcchHhhcCCCC---------CcCHHHHHHHHHHHHHhcCCCEE
Confidence 5788888887652 12666777777666644442 221 1111111 01233223444444443 21 1
Q ss_pred c--cccccCHHHHHHHHhccCcEEEeccCCCcccccccc----cc---------cCHHHHHHHHHHHHHHHHHhCCCeEE
Q 004491 631 T--TPYAFNEGEAVKMAKAGADIIVAHMGLTTSGSIGAK----TA---------LSLDESVDRVQAIADAAHRINPDAIV 695 (749)
Q Consensus 631 T--~~yvf~~eqa~~Ma~AGaDiiv~h~GlT~gG~~Ga~----~~---------~sl~~~~~~~~~i~~aa~~~~pdii~ 695 (749)
- .++..+.++|+++.++|+|.|+++=. ||+-.+. .. ...+-.+...+.|.++..... ++-+
T Consensus 183 vK~~g~g~s~~~a~~l~~~Gvd~I~vsG~---GGt~~~~ie~~r~~~~~~~~~~~~~~~g~~t~~~l~~~~~~~~-~ipI 258 (326)
T cd02811 183 VKEVGFGISRETAKRLADAGVKAIDVAGA---GGTSWARVENYRAKDSDQRLAEYFADWGIPTAASLLEVRSALP-DLPL 258 (326)
T ss_pred EEecCCCCCHHHHHHHHHcCCCEEEECCC---CCCcccccccccccccccccccccccccccHHHHHHHHHHHcC-CCcE
Confidence 1 24567899999999999999999732 5532110 00 001112333445555444442 5556
Q ss_pred EEccCCCCCHHHHHHHHhhCCCccEEecCc
Q 004491 696 LCHGGPISSPSEAEFILKRTKGVHGFYGAS 725 (749)
Q Consensus 696 l~hGGPi~~p~d~~~~l~~~~~~~Gf~g~S 725 (749)
++-|| |.++.|+...+.. +++..-=++
T Consensus 259 iasGG-Ir~~~dv~kal~l--GAd~V~i~~ 285 (326)
T cd02811 259 IASGG-IRNGLDIAKALAL--GADLVGMAG 285 (326)
T ss_pred EEECC-CCCHHHHHHHHHh--CCCEEEEcH
Confidence 66665 9999999999964 456655554
No 225
>cd08210 RLP_RrRLP Ribulose bisphosphate carboxylase like proteins (RLPs) similar to R.rubrum RLP. RLP from Rhodospirillum rubrum plays a role in an uncharacterized sulfur salvage pathway and has been shown to catalyze a novel isomerization reaction that converts 5-methylthio-d-ribulose 1-phosphate to a 3:1 mixture of 1-methylthioxylulose 5-phosphate and 1-methylthioribulose 5-phosphate.
Probab=85.99 E-value=19 Score=40.62 Aligned_cols=120 Identities=19% Similarity=0.180 Sum_probs=73.9
Q ss_pred CCCCCCCCCcccccHHHHHHHHHHHhhc-CCCeEEecc-ccchhhhh-------hhhcCCcEEEEe-ccccccccCCccc
Q 004491 464 PSNFPDARPETLQRTQAILSKLKYQIDK-GLPIIGAGA-GTGISAKF-------EEAGGVDLIVLY-NSGRFRMAGRGSL 533 (749)
Q Consensus 464 ~~~~~~~~~~~~~~r~~il~~L~~~i~~-~~piig~ga-GtGlsAk~-------ae~gGaDli~~y-nsGrfR~~G~~Sl 533 (749)
|..|-.+=|..-+- ++.+|+.+.. ++|++|... -.|++.+. .-.||+|||--- |-| -
T Consensus 100 p~~~~~~f~GP~~G----i~g~R~~lgv~~rPl~~tiiKP~GL~~~~~a~~~~~~~~gGvD~IKdDe~l~---------~ 166 (364)
T cd08210 100 PPSLLRRFPGPRFG----IAGLRALLGIPERPLLCSALKPQGLSAAELAELAYAFALGGIDIIKDDHGLA---------D 166 (364)
T ss_pred CHHHHhcCCCCCCC----hHHHHHHhCCCCCceEEEEeccccCCHHHHHHHHHHHHhcCCCeeecCcccc---------C
Confidence 44443343444444 3455555554 999999542 24666542 345999999632 222 1
Q ss_pred cccccccCchHHHHHhhhhhcCCC-CCCceEEeeccCCCCCCHHHHHHHHHHcCccce-ecCCcccc
Q 004491 534 AGLLPFADANAVVLEMANEVLPVV-KEVPVLAGVCGTDPFRRVDYFLKQLESIGFFGV-QNFPTVGL 598 (749)
Q Consensus 534 agllpygdaN~iv~e~~~eilp~v-~~tPViaGv~atDP~~~~~~~l~~lk~~Gf~GV-~NfPTvgl 598 (749)
-.++||.+-=..+++..++.=... +++|++++|.+. +. +|.+..+..++.|-.+| .|++++|+
T Consensus 167 ~~~~p~~eRv~~v~~av~~a~~eTG~~~~y~~Nita~-~~-em~~ra~~a~~~Ga~~vMv~~~~~G~ 231 (364)
T cd08210 167 QPFAPFEERVKACQEAVAEANAETGGRTLYAPNVTGP-PT-QLLERARFAKEAGAGGVLIAPGLTGL 231 (364)
T ss_pred ccCCCHHHHHHHHHHHHHHHHhhcCCcceEEEecCCC-HH-HHHHHHHHHHHcCCCEEEeecccchH
Confidence 235666666666666655543322 248999999873 55 99999999999997776 45565553
No 226
>CHL00200 trpA tryptophan synthase alpha subunit; Provisional
Probab=85.90 E-value=12 Score=40.18 Aligned_cols=91 Identities=19% Similarity=0.311 Sum_probs=70.1
Q ss_pred hhhhhhcCCchHHHHHHHHHHHHcCCcccc-----cc-----cCH-HHHHHHHhccCcEEEeccCCCcccccccccccCH
Q 004491 604 RQNLEETGMGYGLEVEMIDKAHKMGLLTTP-----YA-----FNE-GEAVKMAKAGADIIVAHMGLTTSGSIGAKTALSL 672 (749)
Q Consensus 604 R~~LEe~G~gy~~EVemi~~A~~~gl~T~~-----yv-----f~~-eqa~~Ma~AGaDiiv~h~GlT~gG~~Ga~~~~sl 672 (749)
.++| +.|+..+.=.+++++-|+. .++| |. |.. .=.+.+.+||+|-+++| .++.
T Consensus 67 ~rAL-~~g~~~~~~~~~~~~~r~~--~~~p~vlm~Y~N~i~~~G~e~F~~~~~~aGvdgviip-------------DLP~ 130 (263)
T CHL00200 67 NRAL-KQGINLNKILSILSEVNGE--IKAPIVIFTYYNPVLHYGINKFIKKISQAGVKGLIIP-------------DLPY 130 (263)
T ss_pred HHHH-HcCCCHHHHHHHHHHHhcC--CCCCEEEEecccHHHHhCHHHHHHHHHHcCCeEEEec-------------CCCH
Confidence 3455 7899999989999998853 4555 32 233 34778899999999999 5666
Q ss_pred HHHHHHHHHHHHHHHHhCCCeEEEEccCCCCCHHHHHHHHhhCC
Q 004491 673 DESVDRVQAIADAAHRINPDAIVLCHGGPISSPSEAEFILKRTK 716 (749)
Q Consensus 673 ~~~~~~~~~i~~aa~~~~pdii~l~hGGPi~~p~d~~~~l~~~~ 716 (749)
+| ..++++++++.+-+.|.|+- |-++++.++.+.++..
T Consensus 131 ee----~~~~~~~~~~~gi~~I~lv~--PtT~~eri~~i~~~a~ 168 (263)
T CHL00200 131 EE----SDYLISVCNLYNIELILLIA--PTSSKSRIQKIARAAP 168 (263)
T ss_pred HH----HHHHHHHHHHcCCCEEEEEC--CCCCHHHHHHHHHhCC
Confidence 55 56788888999999999986 8888899999997743
No 227
>TIGR02660 nifV_homocitr homocitrate synthase NifV. This family consists of the NifV clade of homocitrate synthases, most of which are found in operons for nitrogen fixation. Members are closely homologous to enzymes that include 2-isopropylmalate synthase, (R)-citramalate synthase, and homocitrate synthases associated with other processes. The homocitrate made by this enzyme becomes a part of the iron-molybdenum cofactor of nitrogenase.
Probab=85.80 E-value=7 Score=43.51 Aligned_cols=138 Identities=15% Similarity=0.141 Sum_probs=88.6
Q ss_pred CHHHHHHHHHHcCccceec-CCcccccchhhhhhhhhcCCchHHHHHHHHHHHHcCC--cccccc-cCHHHHHHHHhccC
Q 004491 574 RVDYFLKQLESIGFFGVQN-FPTVGLFDGNFRQNLEETGMGYGLEVEMIDKAHKMGL--LTTPYA-FNEGEAVKMAKAGA 649 (749)
Q Consensus 574 ~~~~~l~~lk~~Gf~GV~N-fPTvgliDG~fR~~LEe~G~gy~~EVemi~~A~~~gl--~T~~yv-f~~eqa~~Ma~AGa 649 (749)
+.-++++.|.++||.-|-= ||.++ +.|.|.++..++.+. -.++++ -+.++.+...++|+
T Consensus 24 ~k~~ia~~L~~~Gv~~IEvG~p~~~-----------------~~~~e~i~~i~~~~~~~~i~~~~r~~~~di~~a~~~g~ 86 (365)
T TIGR02660 24 EKLAIARALDEAGVDELEVGIPAMG-----------------EEERAVIRAIVALGLPARLMAWCRARDADIEAAARCGV 86 (365)
T ss_pred HHHHHHHHHHHcCCCEEEEeCCCCC-----------------HHHHHHHHHHHHcCCCcEEEEEcCCCHHHHHHHHcCCc
Confidence 4567888999999887654 67543 566677888877643 334555 57888999999999
Q ss_pred cEEEeccCCCcccccccccccCHHHHHHHHHHHHHHHHHhCCCeEEEEccCCCCCHHHHHHHHhhC--CCccEEecCccc
Q 004491 650 DIIVAHMGLTTSGSIGAKTALSLDESVDRVQAIADAAHRINPDAIVLCHGGPISSPSEAEFILKRT--KGVHGFYGASSM 727 (749)
Q Consensus 650 Diiv~h~GlT~gG~~Ga~~~~sl~~~~~~~~~i~~aa~~~~pdii~l~hGGPi~~p~d~~~~l~~~--~~~~Gf~g~Ss~ 727 (749)
|.|.+.+... --.+=.+-..|.+++++.+.+..+.|++....+-+-|-=++-++|+.+..+++.. .+++-+.=.-+.
T Consensus 87 ~~i~i~~~~S-d~~~~~~~~~s~~e~l~~~~~~i~~ak~~g~~v~~~~ed~~r~~~~~l~~~~~~~~~~Ga~~i~l~DT~ 165 (365)
T TIGR02660 87 DAVHISIPVS-DLQIEAKLRKDRAWVLERLARLVSFARDRGLFVSVGGEDASRADPDFLVELAEVAAEAGADRFRFADTV 165 (365)
T ss_pred CEEEEEEccC-HHHHHHHhCcCHHHHHHHHHHHHHHHHhCCCEEEEeecCCCCCCHHHHHHHHHHHHHcCcCEEEEcccC
Confidence 9877666432 1111122345788888888888888888776655545555566677766665432 234444444444
Q ss_pred cc
Q 004491 728 ER 729 (749)
Q Consensus 728 ER 729 (749)
..
T Consensus 166 G~ 167 (365)
T TIGR02660 166 GI 167 (365)
T ss_pred CC
Confidence 43
No 228
>PRK08508 biotin synthase; Provisional
Probab=85.77 E-value=55 Score=35.15 Aligned_cols=203 Identities=18% Similarity=0.158 Sum_probs=119.1
Q ss_pred cccccHHHHHHHHHHHhhcCCCeEEeccccchhhhhhhhcCCcEEEEeccccccccCCccccccccccCchHHHHHhhhh
Q 004491 473 ETLQRTQAILSKLKYQIDKGLPIIGAGAGTGISAKFEEAGGVDLIVLYNSGRFRMAGRGSLAGLLPFADANAVVLEMANE 552 (749)
Q Consensus 473 ~~~~~r~~il~~L~~~i~~~~piig~gaGtGlsAk~ae~gGaDli~~ynsGrfR~~G~~SlagllpygdaN~iv~e~~~e 552 (749)
-.+++.++|++..++..+. |++=+.+.-||+. . -...-+.+.|+.++
T Consensus 37 y~~~s~eeI~~~a~~a~~~---------------------g~~~~~lv~sg~~-~-----------~~~~~e~~~ei~~~ 83 (279)
T PRK08508 37 YKRKDIEQIVQEAKMAKAN---------------------GALGFCLVTSGRG-L-----------DDKKLEYVAEAAKA 83 (279)
T ss_pred ccCCCHHHHHHHHHHHHHC---------------------CCCEEEEEeccCC-C-----------CcccHHHHHHHHHH
Confidence 3468899999887764443 4444433333331 0 01123667777766
Q ss_pred hcCCCCCCceEEeeccCCCCCCHHHHHHHHHHcCccceec-CCcccccchhhhhhhhhcCCchHHHHHHHHHHHHcCCcc
Q 004491 553 VLPVVKEVPVLAGVCGTDPFRRVDYFLKQLESIGFFGVQN-FPTVGLFDGNFRQNLEETGMGYGLEVEMIDKAHKMGLLT 631 (749)
Q Consensus 553 ilp~v~~tPViaGv~atDP~~~~~~~l~~lk~~Gf~GV~N-fPTvgliDG~fR~~LEe~G~gy~~EVemi~~A~~~gl~T 631 (749)
|--...++. +|++.-+. -.+-+++||+.|...+.. .=| + +-.|++. -++-.|+.=++.|+.||+.|+-+
T Consensus 84 ik~~~p~l~----i~~s~G~~-~~e~l~~Lk~aGld~~~~~lEt-~--~~~~~~i--~~~~~~~~~l~~i~~a~~~Gi~v 153 (279)
T PRK08508 84 VKKEVPGLH----LIACNGTA-SVEQLKELKKAGIFSYNHNLET-S--KEFFPKI--CTTHTWEERFQTCENAKEAGLGL 153 (279)
T ss_pred HHhhCCCcE----EEecCCCC-CHHHHHHHHHcCCCEEcccccc-h--HHHhcCC--CCCCCHHHHHHHHHHHHHcCCee
Confidence 542221222 33333333 378899999999988874 112 1 1112222 24678999999999999999876
Q ss_pred ccc-cc----CHHHHH----HHHhccCcEEEeccCCCcccccccccccCHHHHHHHHHHHHHHHHHhCCCeEEEEccCCC
Q 004491 632 TPY-AF----NEGEAV----KMAKAGADIIVAHMGLTTSGSIGAKTALSLDESVDRVQAIADAAHRINPDAIVLCHGGPI 702 (749)
Q Consensus 632 ~~y-vf----~~eqa~----~Ma~AGaDiiv~h~GlT~gG~~Ga~~~~sl~~~~~~~~~i~~aa~~~~pdii~l~hGGPi 702 (749)
+.- .+ +.||-. .+.+-+.|-+-.|+=.-..|+--.....|.+++. ++...+|-+.|+..+-+-||-=
T Consensus 154 ~sg~I~GlGEt~ed~~~~l~~lr~L~~~svpl~~~~p~~~t~~~~~~~~~~~~l----r~iAv~Rl~lp~~~i~~~~gr~ 229 (279)
T PRK08508 154 CSGGIFGLGESWEDRISFLKSLASLSPHSTPINFFIPNPALPLKAPTLSADEAL----EIVRLAKEALPNARLMVAGGRE 229 (279)
T ss_pred cceeEEecCCCHHHHHHHHHHHHcCCCCEEeeCCcCCCCCCCCCCCCCCHHHHH----HHHHHHHHHCCCceeeecCChh
Confidence 432 22 345444 4458899977777744444443222345666665 5566678889999998888853
Q ss_pred CCHHHHHHHHhhCCCccEEec
Q 004491 703 SSPSEAEFILKRTKGVHGFYG 723 (749)
Q Consensus 703 ~~p~d~~~~l~~~~~~~Gf~g 723 (749)
....|.|..+=. .+++|-+-
T Consensus 230 ~~~~~~~~~~~~-~g~n~~~~ 249 (279)
T PRK08508 230 VVFGERQYEIFE-AGANAIVI 249 (279)
T ss_pred hhchhhHHHHHh-cCCcceee
Confidence 334556655423 45565443
No 229
>smart00518 AP2Ec AP endonuclease family 2. These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites
Probab=85.76 E-value=13 Score=38.64 Aligned_cols=126 Identities=17% Similarity=0.241 Sum_probs=67.5
Q ss_pred HHHHHHHHHHcCccceecCCccc-ccchhhhhhhhhcCCchHHHHHHHHHHHHcCC-cc--cccccC-----HHH-----
Q 004491 575 VDYFLKQLESIGFFGVQNFPTVG-LFDGNFRQNLEETGMGYGLEVEMIDKAHKMGL-LT--TPYAFN-----EGE----- 640 (749)
Q Consensus 575 ~~~~l~~lk~~Gf~GV~NfPTvg-liDG~fR~~LEe~G~gy~~EVemi~~A~~~gl-~T--~~yvf~-----~eq----- 640 (749)
+.+-++++.+.||.+|+=|+.-- .+++. -+..+.--++-+.+.+.|+ ++ .||.+| ++.
T Consensus 12 ~~~~~~~~~~~G~~~vel~~~~~~~~~~~--------~~~~~~~~~l~~~~~~~gl~ls~h~p~~~nl~s~d~~~r~~~~ 83 (273)
T smart00518 12 LYKAFIEAVDIGARSFQLFLGNPRSWKGV--------RLSEETAEKFKEALKENNIDVSVHAPYLINLASPDKEKVEKSI 83 (273)
T ss_pred HhHHHHHHHHcCCCEEEEECCCCCCCCCC--------CCCHHHHHHHHHHHHHcCCCEEEECCceecCCCCCHHHHHHHH
Confidence 66789999999999998763222 22221 0111111112222334444 22 255332 221
Q ss_pred -----HHH-HHhccCcEEEeccCCCcccccccccccCHHHHHHHHHHHHHHHHHhCCCeEEEEc-----cCCC-CCHHHH
Q 004491 641 -----AVK-MAKAGADIIVAHMGLTTSGSIGAKTALSLDESVDRVQAIADAAHRINPDAIVLCH-----GGPI-SSPSEA 708 (749)
Q Consensus 641 -----a~~-Ma~AGaDiiv~h~GlT~gG~~Ga~~~~sl~~~~~~~~~i~~aa~~~~pdii~l~h-----GGPi-~~p~d~ 708 (749)
+-. ..+.||+.|+.|.|... ...+...++..++.++++.+ ....+.+++. ..++ .+|+++
T Consensus 84 ~~l~~~i~~A~~lGa~~vv~h~g~~~----~~~~e~~~~~~~~~l~~l~~----~~~gv~l~lEn~~~~~~~~~~~~~~~ 155 (273)
T smart00518 84 ERLIDEIKRCEELGIKALVFHPGSYL----KQSKEEALNRIIESLNEVID----ETKGVVILLETTAGKGSQIGSTFEDL 155 (273)
T ss_pred HHHHHHHHHHHHcCCCEEEEcccccc----CCCHHHHHHHHHHHHHHHHh----ccCCcEEEEeccCCCCCccCCCHHHH
Confidence 112 34679999999998641 11222334455555555544 2555655442 2343 699999
Q ss_pred HHHHhhCC
Q 004491 709 EFILKRTK 716 (749)
Q Consensus 709 ~~~l~~~~ 716 (749)
..+++.+.
T Consensus 156 ~~ll~~v~ 163 (273)
T smart00518 156 KEIIDLIK 163 (273)
T ss_pred HHHHHhcC
Confidence 99998764
No 230
>PRK07455 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=85.74 E-value=3.4 Score=41.89 Aligned_cols=119 Identities=13% Similarity=0.077 Sum_probs=73.7
Q ss_pred CceEEeeccCCCCCCHHHHHHHHHHcCccceecCCcccccchhhhhhhhhcCCchHHHHHHHHHHHHc-CCcc--ccccc
Q 004491 560 VPVLAGVCGTDPFRRVDYFLKQLESIGFFGVQNFPTVGLFDGNFRQNLEETGMGYGLEVEMIDKAHKM-GLLT--TPYAF 636 (749)
Q Consensus 560 tPViaGv~atDP~~~~~~~l~~lk~~Gf~GV~NfPTvgliDG~fR~~LEe~G~gy~~EVemi~~A~~~-gl~T--~~yvf 636 (749)
.||++=+-+.|| .+....++++.+.|+.-|| +| ....+.. |.++.+++. .+.. ..-++
T Consensus 12 ~~~~~v~r~~~~-~~~~~~~~~~~~~Gv~~vq-----------lr----~k~~~~~---e~~~~~~~~~~~~~~g~gtvl 72 (187)
T PRK07455 12 HRAIAVIRAPDL-ELGLQMAEAVAAGGMRLIE-----------IT----WNSDQPA---ELISQLREKLPECIIGTGTIL 72 (187)
T ss_pred CCEEEEEEcCCH-HHHHHHHHHHHHCCCCEEE-----------Ee----CCCCCHH---HHHHHHHHhCCCcEEeEEEEE
Confidence 344433333333 4555688888899988776 22 2222222 445555443 3322 34688
Q ss_pred CHHHHHHHHhccCcEE-EeccCCCcccccccccccCHHHHHHHHHHHHHHHHHhCCCeEEEEccCCCCCHHHHHHHHhhC
Q 004491 637 NEGEAVKMAKAGADII-VAHMGLTTSGSIGAKTALSLDESVDRVQAIADAAHRINPDAIVLCHGGPISSPSEAEFILKRT 715 (749)
Q Consensus 637 ~~eqa~~Ma~AGaDii-v~h~GlT~gG~~Ga~~~~sl~~~~~~~~~i~~aa~~~~pdii~l~hGGPi~~p~d~~~~l~~~ 715 (749)
+.++++.-.++|||-+ ..|++ +++.++++..+.+.+. | ..||+++..-.+.-
T Consensus 73 ~~d~~~~A~~~gAdgv~~p~~~----------------------~~~~~~~~~~~~~~i~---G--~~t~~e~~~A~~~G 125 (187)
T PRK07455 73 TLEDLEEAIAAGAQFCFTPHVD----------------------PELIEAAVAQDIPIIP---G--ALTPTEIVTAWQAG 125 (187)
T ss_pred cHHHHHHHHHcCCCEEECCCCC----------------------HHHHHHHHHcCCCEEc---C--cCCHHHHHHHHHCC
Confidence 8899999999999954 56766 5666667666665433 3 66999998888665
Q ss_pred CCccEEecC
Q 004491 716 KGVHGFYGA 724 (749)
Q Consensus 716 ~~~~Gf~g~ 724 (749)
.+..+||-+
T Consensus 126 adyv~~Fpt 134 (187)
T PRK07455 126 ASCVKVFPV 134 (187)
T ss_pred CCEEEECcC
Confidence 555666443
No 231
>PRK08318 dihydropyrimidine dehydrogenase subunit B; Validated
Probab=85.56 E-value=12 Score=42.23 Aligned_cols=162 Identities=15% Similarity=0.042 Sum_probs=96.1
Q ss_pred CCCeEEecccc------chhhhhhhhcCCcEEEEeccccc-cccCCccccccccccCchHHHHHhhhhhcCCCCCCceEE
Q 004491 492 GLPIIGAGAGT------GISAKFEEAGGVDLIVLYNSGRF-RMAGRGSLAGLLPFADANAVVLEMANEVLPVVKEVPVLA 564 (749)
Q Consensus 492 ~~piig~gaGt------GlsAk~ae~gGaDli~~ynsGrf-R~~G~~SlagllpygdaN~iv~e~~~eilp~v~~tPVia 564 (749)
..|+|..-.|. --.|+..++.|+|.|-+ |-+-= -..+++.=+ .++.--+.+.++.+.+-..+ ++||+.
T Consensus 99 ~~p~i~si~g~~~~~~~~~~a~~~~~~g~d~iel-N~scP~~~~~~~~g~---~~~~~~~~~~~i~~~v~~~~-~~Pv~v 173 (420)
T PRK08318 99 DRALIASIMVECNEEEWKEIAPLVEETGADGIEL-NFGCPHGMSERGMGS---AVGQVPELVEMYTRWVKRGS-RLPVIV 173 (420)
T ss_pred CceEEEEeccCCCHHHHHHHHHHHHhcCCCEEEE-eCCCCCCccccCCcc---cccCCHHHHHHHHHHHHhcc-CCcEEE
Confidence 47766544454 23456667789998764 33210 111111101 12333466777776666655 489998
Q ss_pred eeccCCCCCCHHHHHHHHHHcCccceecCCcccc---cch---hhhhhh----hhcCCchHH----HHHHHHHHHHc---
Q 004491 565 GVCGTDPFRRVDYFLKQLESIGFFGVQNFPTVGL---FDG---NFRQNL----EETGMGYGL----EVEMIDKAHKM--- 627 (749)
Q Consensus 565 Gv~atDP~~~~~~~l~~lk~~Gf~GV~NfPTvgl---iDG---~fR~~L----Ee~G~gy~~----EVemi~~A~~~--- 627 (749)
=+... +.++..+.+.+.+.|..||.=+=|+.- ||= +.+-.| +.-|++=.- =.++|++.++.
T Consensus 174 Kl~p~--~~~~~~~a~~~~~~Gadgi~~~Nt~~~~~~id~~~~~~~p~~~~~~~~gg~SG~a~~p~~l~~v~~~~~~~~~ 251 (420)
T PRK08318 174 KLTPN--ITDIREPARAAKRGGADAVSLINTINSITGVDLDRMIPMPIVNGKSSHGGYCGPAVKPIALNMVAEIARDPET 251 (420)
T ss_pred EcCCC--cccHHHHHHHHHHCCCCEEEEecccCccccccccccCCCceecCCCCcccccchhhhHHHHHHHHHHHhcccc
Confidence 88632 246889999999999999984434433 221 111122 112232112 35777777663
Q ss_pred ---CCcccccccCHHHHHHHHhccCcEEEeccCCCc
Q 004491 628 ---GLLTTPYAFNEGEAVKMAKAGADIIVAHMGLTT 660 (749)
Q Consensus 628 ---gl~T~~yvf~~eqa~~Ma~AGaDiiv~h~GlT~ 660 (749)
-+.-.+=|+|.++|.+|..||||.+=+-=++-.
T Consensus 252 ~~ipIig~GGI~s~~da~e~i~aGA~~Vqi~ta~~~ 287 (420)
T PRK08318 252 RGLPISGIGGIETWRDAAEFILLGAGTVQVCTAAMQ 287 (420)
T ss_pred CCCCEEeecCcCCHHHHHHHHHhCCChheeeeeecc
Confidence 466677799999999999999998765544443
No 232
>cd00537 MTHFR Methylenetetrahydrofolate reductase (MTHFR). 5,10-Methylenetetrahydrofolate is reduced to 5-methyltetrahydrofolate by methylenetetrahydrofolate reductase, a cytoplasmic, NAD(P)-dependent enzyme. 5-methyltetrahydrofolate is utilized by methionine synthase to convert homocysteine to methionine. The enzymatic mechanism is a ping-pong bi-bi mechanism, in which NAD(P)+ release precedes the binding of methylenetetrahydrofolate and the acceptor is free FAD. The family includes the 5,10-methylenetetrahydrofolate reductase EC:1.7.99.5 from prokaryotes and methylenetetrahydrofolate reductase EC: 1.5.1.20 from eukaryotes. The bacterial enzyme is a homotetramer and NADH is the preferred reductant while the eukaryotic enzyme is a homodimer and NADPH is the preferred reductant. In humans, there are several clinically significant mutations in MTHFR that result in hyperhomocysteinemia, which is a risk factor for the development of cardiovascular disease.
Probab=85.22 E-value=14 Score=39.11 Aligned_cols=166 Identities=17% Similarity=0.200 Sum_probs=102.8
Q ss_pred hhcCCcEEEE-eccc-cccccCCccccccccccCchHHHHHhhhhhcCCCCCCceEEeeccCCCC-CCHHHHHHHHHHcC
Q 004491 510 EAGGVDLIVL-YNSG-RFRMAGRGSLAGLLPFADANAVVLEMANEVLPVVKEVPVLAGVCGTDPF-RRVDYFLKQLESIG 586 (749)
Q Consensus 510 e~gGaDli~~-ynsG-rfR~~G~~SlagllpygdaN~iv~e~~~eilp~v~~tPViaGv~atDP~-~~~~~~l~~lk~~G 586 (749)
+.+++|++.+ +|.| .-|. ...+.+..++... .+|++.=+.+.|-. ..+...|.++++.|
T Consensus 25 ~~~~~d~v~Vt~~~~g~~~~-----------------~t~~~a~~l~~~~-g~~~i~Hlt~r~~n~~~l~~~L~~~~~~G 86 (274)
T cd00537 25 GALDPDFVSVTDGAGGSTRD-----------------MTLLAAARILQEG-GIEPIPHLTCRDRNRIELQSILLGAHALG 86 (274)
T ss_pred hcCCCCEEEeCCCCCCchhh-----------------hHHHHHHHHHHhc-CCCeeeecccCCCCHHHHHHHHHHHHHCC
Confidence 3456899887 4544 3332 2344444444443 46777777777754 45677777777776
Q ss_pred ccceecCCcccccchhhh---hhhhhcCCchHHHHHHHHHHHHc--CCcccccc---------cC-HHHHHHH---Hhcc
Q 004491 587 FFGVQNFPTVGLFDGNFR---QNLEETGMGYGLEVEMIDKAHKM--GLLTTPYA---------FN-EGEAVKM---AKAG 648 (749)
Q Consensus 587 f~GV~NfPTvgliDG~fR---~~LEe~G~gy~~EVemi~~A~~~--gl~T~~yv---------f~-~eqa~~M---a~AG 648 (749)
+..|- -+ -|..- ..-+.....|..=+++|+..+++ +-|.++-. -| ++|-+.| .+||
T Consensus 87 i~~iL---~l---~GD~~~~~~~~~~~~~~~~~a~~Li~~i~~~~~~~~~igva~yPe~hp~~~~~~~~~~~L~~Ki~aG 160 (274)
T cd00537 87 IRNIL---AL---RGDPPKGGDQPGAKPVGFVYAVDLVELIRKENGGGFSIGVAAYPEGHPEAPSLEEDIKRLKRKVDAG 160 (274)
T ss_pred CCeEE---Ee---CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHhcCCCCccccccCCCcCCCCCCHHHHHHHHHHHHHCC
Confidence 55432 22 11111 11244556788889999999987 45554432 22 2344444 5899
Q ss_pred CcEEEeccCCCcccccccccccCHHHHHHHHHHHHHHHHHhCCCeEEEEccCCCCCHHHHHHHHhhC
Q 004491 649 ADIIVAHMGLTTSGSIGAKTALSLDESVDRVQAIADAAHRINPDAIVLCHGGPISSPSEAEFILKRT 715 (749)
Q Consensus 649 aDiiv~h~GlT~gG~~Ga~~~~sl~~~~~~~~~i~~aa~~~~pdii~l~hGGPi~~p~d~~~~l~~~ 715 (749)
||-++..+... .+...++.+.+++..-++-+++-==|+.+...++++.+.+
T Consensus 161 A~f~iTQ~~fd----------------~~~~~~~~~~~~~~gi~vPIi~GI~p~~s~~~l~~~~~~~ 211 (274)
T cd00537 161 ADFIITQLFFD----------------NDAFLRFVDRCRAAGITVPIIPGIMPLTSYKQAKRFAKLC 211 (274)
T ss_pred CCEEeeccccc----------------HHHHHHHHHHHHHcCCCCCEEeeccccCCHHHHHHHHHhh
Confidence 99999988754 2455667777777765555555555999999999998764
No 233
>TIGR03700 mena_SCO4494 putative menaquinone biosynthesis protein, SCO4494 family. Members of this protein family appear to be involved in menaquinone biosynthesis by an alternate pathway via futalosine, based on close phylogenetic correlation with known markers of the futalosine pathway, gene clustering in many organisms, and paralogy with the SCO4550 protein.
Probab=85.19 E-value=29 Score=38.40 Aligned_cols=99 Identities=15% Similarity=0.193 Sum_probs=67.9
Q ss_pred CHHHHHHHHHHcCcccee-cCCcccccchhhhhhhhhcCCchHHHHHHHHHHHHcCCcccccccCHHHHHHHHhccCcEE
Q 004491 574 RVDYFLKQLESIGFFGVQ-NFPTVGLFDGNFRQNLEETGMGYGLEVEMIDKAHKMGLLTTPYAFNEGEAVKMAKAGADII 652 (749)
Q Consensus 574 ~~~~~l~~lk~~Gf~GV~-NfPTvgliDG~fR~~LEe~G~gy~~EVemi~~A~~~gl~T~~yvf~~eqa~~Ma~AGaDii 652 (749)
..++-+++||+.|...+. | ++=..+-++|+.+-.+...+++-++.|+.||+.|+-++.
T Consensus 148 ~~~e~l~~LkeAGld~~~~~--g~E~~~~~v~~~i~~~~~~~~~~l~~i~~a~~~Gi~~~s------------------- 206 (351)
T TIGR03700 148 PTEEVLDELKEAGLDSMPGG--GAEIFAEEVRQQICPEKISAERWLEIHRTAHELGLKTNA------------------- 206 (351)
T ss_pred CHHHHHHHHHHcCCCcCCCC--cccccCHHHHhhcCCCCCCHHHHHHHHHHHHHcCCCcce-------------------
Confidence 456779999999988775 3 222234467777766667777778999999999987765
Q ss_pred EeccCCCcccccccccccCHHHHHHHHHHHHHHHHHhCCCeEEEEc-----cCCCC
Q 004491 653 VAHMGLTTSGSIGAKTALSLDESVDRVQAIADAAHRINPDAIVLCH-----GGPIS 703 (749)
Q Consensus 653 v~h~GlT~gG~~Ga~~~~sl~~~~~~~~~i~~aa~~~~pdii~l~h-----GGPi~ 703 (749)
++.+|. ..|.+|-++.+..+.+.-.+..+-..++-+ |.|+.
T Consensus 207 --------g~i~Gl--gEt~edrv~~l~~Lr~l~~~~~~f~~fiP~~f~~~~tpl~ 252 (351)
T TIGR03700 207 --------TMLYGH--IETPAHRVDHMLRLRELQDETGGFQAFIPLAFQPDNNRLN 252 (351)
T ss_pred --------EEEeeC--CCCHHHHHHHHHHHHHhhHhhCCceEEEeecccCCCCccc
Confidence 344443 367788888888888777766554333332 65653
No 234
>TIGR02708 L_lactate_ox L-lactate oxidase. Members of this protein oxidize L-lactate to pyruvate, reducing molecular oxygen to hydrogen peroxide. The enzyme is known in Aerococcus viridans, Streptococcus iniae, and some strains of Streptococcus pyogenes where it appears to contribute to virulence.
Probab=85.15 E-value=11 Score=42.56 Aligned_cols=178 Identities=13% Similarity=0.064 Sum_probs=96.1
Q ss_pred hhhhhhhhcCCcEEEEeccccccccCCccccccccccCchHHHHHhhhhhcCCCCCCceEEeeccCCCCCCHHHHHHHHH
Q 004491 504 ISAKFEEAGGVDLIVLYNSGRFRMAGRGSLAGLLPFADANAVVLEMANEVLPVVKEVPVLAGVCGTDPFRRVDYFLKQLE 583 (749)
Q Consensus 504 lsAk~ae~gGaDli~~ynsGrfR~~G~~SlagllpygdaN~iv~e~~~eilp~v~~tPViaGv~atDP~~~~~~~l~~lk 583 (749)
.+||.|.+.|+=+++--. ||.-+.|.++. .++.|.++-+....--.....+|++.+
T Consensus 101 ~~ArAA~~~g~~~~lSt~--------------------ss~slEev~~~----~~~~~~wfQlY~~~dr~~~~~li~RA~ 156 (367)
T TIGR02708 101 ATARGVSEFGSIYTTSSY--------------------STADLPEISEA----LNGTPHWFQFYMSKDDGINRDIMDRVK 156 (367)
T ss_pred HHHHHHHHcCCCeeeccc--------------------ccCCHHHHHhh----cCCCceEEEEeccCCHHHHHHHHHHHH
Confidence 478999999998887211 23333333322 234577777766332233577888888
Q ss_pred HcCccceec---CCcccccc-------------hhhhhhhh--------------hcCCchHHHHHHHHHHHHcCCcccc
Q 004491 584 SIGFFGVQN---FPTVGLFD-------------GNFRQNLE--------------ETGMGYGLEVEMIDKAHKMGLLTTP 633 (749)
Q Consensus 584 ~~Gf~GV~N---fPTvgliD-------------G~fR~~LE--------------e~G~gy~~EVemi~~A~~~gl~T~~ 633 (749)
+.||.++.= -|..|-=. ..+..++. ...+.. ..++-|+..-.. =+++=
T Consensus 157 ~aG~~alvlTvD~p~~g~R~~d~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w-~~i~~l~~~~~~-PvivK 234 (367)
T TIGR02708 157 ADGAKAIVLTADATVGGNREVDVRNGFVFPVGMPIVQEYLPTGAGKSMDNVYKSAKQKLSP-RDIEEIAGYSGL-PVYVK 234 (367)
T ss_pred HcCCCEEEEecCCCCCCcchhhhhcCCCCCCccchhhhhcccCCccchhhhccccCCCCCH-HHHHHHHHhcCC-CEEEe
Confidence 888876531 11111000 00000110 112223 246666554331 12222
Q ss_pred cccCHHHHHHHHhccCcE--EEeccCCCcccccccccccCHHHHHHHHHHHHHHHHHhCCCeEEEEccCCCCCHHHHHHH
Q 004491 634 YAFNEGEAVKMAKAGADI--IVAHMGLTTSGSIGAKTALSLDESVDRVQAIADAAHRINPDAIVLCHGGPISSPSEAEFI 711 (749)
Q Consensus 634 yvf~~eqa~~Ma~AGaDi--iv~h~GlT~gG~~Ga~~~~sl~~~~~~~~~i~~aa~~~~pdii~l~hGGPi~~p~d~~~~ 711 (749)
=|.++|+|++..++|+|. +..|-|-... ...+ ..+.+.+| ...+++++-|+..|| |.+..|+...
T Consensus 235 Gv~~~eda~~a~~~Gvd~I~VS~HGGrq~~------~~~a---~~~~L~ei---~~av~~~i~vi~dGG-Ir~g~Dv~Ka 301 (367)
T TIGR02708 235 GPQCPEDADRALKAGASGIWVTNHGGRQLD------GGPA---AFDSLQEV---AEAVDKRVPIVFDSG-VRRGQHVFKA 301 (367)
T ss_pred CCCCHHHHHHHHHcCcCEEEECCcCccCCC------CCCc---HHHHHHHH---HHHhCCCCcEEeeCC-cCCHHHHHHH
Confidence 255699999999999994 4566542111 1111 11222333 334666677777776 9999999999
Q ss_pred HhhCCCccEEe
Q 004491 712 LKRTKGVHGFY 722 (749)
Q Consensus 712 l~~~~~~~Gf~ 722 (749)
|. .++++-.
T Consensus 302 La--lGAd~V~ 310 (367)
T TIGR02708 302 LA--SGADLVA 310 (367)
T ss_pred HH--cCCCEEE
Confidence 96 4566643
No 235
>cd00453 FTBP_aldolase_II Fructose/tagarose-bisphosphate aldolase class II. This family includes fructose-1,6-bisphosphate (FBP) and tagarose 1,6-bisphosphate (TBP) aldolases. FBP-aldolase is homodimeric and used in gluconeogenesis and glycolysis; the enzyme controls the condensation of dihydroxyacetone phosphate with glyceraldehyde-3-phosphate to yield fructose-1,6-bisphosphate. TBP-aldolase is tetrameric and produces tagarose-1,6-bisphosphate. There is an absolute requirement for a divalent metal ion, usually zinc, and in addition the enzymes are activated by monovalent cations such as Na+. Although structurally similar, the class I aldolases use a different mechanism and are believed to have an independent evolutionary origin.
Probab=85.14 E-value=41 Score=37.86 Aligned_cols=187 Identities=18% Similarity=0.223 Sum_probs=113.2
Q ss_pred hhhhhcCCcEEEEecc-ccccccCCccccccccccCc-------hHHHHHhhhhhcCCCCCCceEEeeccCCCCC--CHH
Q 004491 507 KFEEAGGVDLIVLYNS-GRFRMAGRGSLAGLLPFADA-------NAVVLEMANEVLPVVKEVPVLAGVCGTDPFR--RVD 576 (749)
Q Consensus 507 k~ae~gGaDli~~yns-GrfR~~G~~Slagllpygda-------N~iv~e~~~eilp~v~~tPViaGv~atDP~~--~~~ 576 (749)
+.||+-+++.||-.+. |..+.+|-| .-.=.|-|++ =.++..++++ . .+||.-= .|=-. ++
T Consensus 31 ~aAee~~sPvIlq~s~~~~~~~~g~~-~~~~~~~~~~~~~~~~~~~~~~~~A~~----~-~VPV~lH---LDH~~~~~~- 100 (340)
T cd00453 31 ETAAKVKAPVIVQFSNGGASFIAGKG-VKSDVPQGAAILGAISGAHHVHQMAEH----Y-GVPVILH---TDHCAKKLL- 100 (340)
T ss_pred HHHHHhCCCEEEEcCcchHHHhCCCc-ccccccchhhhhhHHHHHHHHHHHHHH----C-CCCEEEE---cCCCCCCCH-
Confidence 5788889999999877 665655511 1111122222 2234444433 2 4687643 34333 33
Q ss_pred HHHHHHHHcC--ccceecCC--cccccchh---hhhhhhhcCCchHHHHHHHHHHHHcCCcc------------------
Q 004491 577 YFLKQLESIG--FFGVQNFP--TVGLFDGN---FRQNLEETGMGYGLEVEMIDKAHKMGLLT------------------ 631 (749)
Q Consensus 577 ~~l~~lk~~G--f~GV~NfP--TvgliDG~---fR~~LEe~G~gy~~EVemi~~A~~~gl~T------------------ 631 (749)
.++++..+.| ++--.|=| |.-+|||+ |-+|++. =-++.+.||.+|+..
T Consensus 101 e~i~~ai~~G~~~~~~~~~~~FsSVMiDgS~l~~eeNi~~-------T~~vve~Ah~~gi~VEaElG~igG~ed~~~~~~ 173 (340)
T cd00453 101 PWIDGLLDAGEKHFAATGKPLFSSHMIDLSEESLQENIEI-------CSKYLERMSKIGMTLEIELGCTGGEEDGVDNSH 173 (340)
T ss_pred HHHHHHHHcCCccccccCCCCceeEEecCCCCCHHHHHHH-------HHHHHHHHHHcCCEEEEEEEecCCccCCccccc
Confidence 7899999999 11111211 23388986 4555542 235567777766531
Q ss_pred c---ccccCHHHHHHHH-hcc----CcEEEeccCCCcccccccccccCHHHHHHHHHHHHHHHHHh----CCCeEEEEcc
Q 004491 632 T---PYAFNEGEAVKMA-KAG----ADIIVAHMGLTTSGSIGAKTALSLDESVDRVQAIADAAHRI----NPDAIVLCHG 699 (749)
Q Consensus 632 ~---~yvf~~eqa~~Ma-~AG----aDiiv~h~GlT~gG~~Ga~~~~sl~~~~~~~~~i~~aa~~~----~pdii~l~hG 699 (749)
. .+-.++|||+++. +-| +|.|-+-+|-..|-..+-+..+.+ +++++|.++..+- ++++-+..||
T Consensus 174 ~~~~~~yT~Peea~~Fv~~Tg~i~pvD~LAvsiGt~HG~Yk~g~p~L~~----~~L~~i~~~~~~~~gl~~~~~pLVlHG 249 (340)
T cd00453 174 MDASALYTQPEDVDYAYTELSKISPRFTIAASFGNVHGVYKKGNVVLTP----TILRDSQEYVSKKHNLPHNSLNFVFHG 249 (340)
T ss_pred ccccccCCCHHHHHHHHHHhCCCCcceEEeeecCccccCCCCCCCccCH----HHHHHHHHHHHhhcccCCCCCceEEeC
Confidence 1 2345799999998 579 999999998877776532334444 4667776665321 2577778899
Q ss_pred CCCCCHHHHHHHHhh
Q 004491 700 GPISSPSEAEFILKR 714 (749)
Q Consensus 700 GPi~~p~d~~~~l~~ 714 (749)
|-=...++++...++
T Consensus 250 gSG~~~e~~~~ai~~ 264 (340)
T cd00453 250 GSGSTAQEIKDSVSY 264 (340)
T ss_pred CCCCCHHHHHHHHHc
Confidence 977777888876643
No 236
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=84.88 E-value=38 Score=34.99 Aligned_cols=106 Identities=22% Similarity=0.166 Sum_probs=66.6
Q ss_pred HHHHHHHHHcCccceecCCcccccchhhhhhhhhcCCc----hHHHHHHHHHHHHcCCcccccc---cC--------HHH
Q 004491 576 DYFLKQLESIGFFGVQNFPTVGLFDGNFRQNLEETGMG----YGLEVEMIDKAHKMGLLTTPYA---FN--------EGE 640 (749)
Q Consensus 576 ~~~l~~lk~~Gf~GV~NfPTvgliDG~fR~~LEe~G~g----y~~EVemi~~A~~~gl~T~~yv---f~--------~eq 640 (749)
.++++++++.|+..|.=+=. ..|-+-..+ .+.+ +++=++.|+.|++.|+....+. |. .+-
T Consensus 77 ~~~i~~a~~~g~~~i~i~~~--~s~~~~~~~---~~~~~~~~~~~~~~~i~~a~~~G~~v~~~~~~~~~~~~~~~~l~~~ 151 (265)
T cd03174 77 EKGIERALEAGVDEVRIFDS--ASETHSRKN---LNKSREEDLENAEEAIEAAKEAGLEVEGSLEDAFGCKTDPEYVLEV 151 (265)
T ss_pred hhhHHHHHhCCcCEEEEEEe--cCHHHHHHH---hCCCHHHHHHHHHHHHHHHHHCCCeEEEEEEeecCCCCCHHHHHHH
Confidence 88999999999877765521 123222222 2333 5666789999999998665544 44 556
Q ss_pred HHHHHhccCcEEEeccCCCcccccccccccCHHHHHHHHHHHHHHHHHhCCCeEEEEcc
Q 004491 641 AVKMAKAGADIIVAHMGLTTSGSIGAKTALSLDESVDRVQAIADAAHRINPDAIVLCHG 699 (749)
Q Consensus 641 a~~Ma~AGaDiiv~h~GlT~gG~~Ga~~~~sl~~~~~~~~~i~~aa~~~~pdii~l~hG 699 (749)
++.+.++|+|.|+. .=|+|- .+-++.. ++++..++.-|++.+=+|+
T Consensus 152 ~~~~~~~g~~~i~l--~Dt~G~-------~~P~~v~----~li~~l~~~~~~~~~~~H~ 197 (265)
T cd03174 152 AKALEEAGADEISL--KDTVGL-------ATPEEVA----ELVKALREALPDVPLGLHT 197 (265)
T ss_pred HHHHHHcCCCEEEe--chhcCC-------cCHHHHH----HHHHHHHHhCCCCeEEEEe
Confidence 67778899999883 334332 3444444 4455555555666666776
No 237
>cd04736 MDH_FMN Mandelate dehydrogenase (MDH)-like FMN-binding domain. MDH is part of a widespread family of homologous FMN-dependent a-hydroxy acid oxidizing enzymes that oxidizes (S)-mandelate to phenylglyoxalate. MDH is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO).
Probab=84.88 E-value=19 Score=40.54 Aligned_cols=118 Identities=14% Similarity=0.208 Sum_probs=65.2
Q ss_pred CCchHHHHHHHHHHHHcCCcccccccCHHHHHHHHhccCcEEEeccCCCcccccccccccCHHHHHHHHHHHHHHHHHhC
Q 004491 611 GMGYGLEVEMIDKAHKMGLLTTPYAFNEGEAVKMAKAGADIIVAHMGLTTSGSIGAKTALSLDESVDRVQAIADAAHRIN 690 (749)
Q Consensus 611 G~gy~~EVemi~~A~~~gl~T~~yvf~~eqa~~Ma~AGaDiiv~h~GlT~gG~~Ga~~~~sl~~~~~~~~~i~~aa~~~~ 690 (749)
.+.++ -|+-|+..-. +-+-+.=|.+.++|++..++|+|.|++-. .||. ..+...+ .++.+-+|.+ ..+
T Consensus 222 ~~~w~-~i~~ir~~~~-~pviiKgV~~~eda~~a~~~G~d~I~VSn---hGGr-qld~~~~---~~~~L~ei~~---~~~ 289 (361)
T cd04736 222 SFNWQ-DLRWLRDLWP-HKLLVKGIVTAEDAKRCIELGADGVILSN---HGGR-QLDDAIA---PIEALAEIVA---ATY 289 (361)
T ss_pred cCCHH-HHHHHHHhCC-CCEEEecCCCHHHHHHHHHCCcCEEEECC---CCcC-CCcCCcc---HHHHHHHHHH---HhC
Confidence 35554 4666666443 22222237899999999999999885421 1222 1122222 2333334433 333
Q ss_pred CCeEEEEccCCCCCHHHHHHHHhhCCCccE-EecCcccc------cchHHHHHHHHHHhhcc
Q 004491 691 PDAIVLCHGGPISSPSEAEFILKRTKGVHG-FYGASSME------RLPVEQAITSTMRQYKS 745 (749)
Q Consensus 691 pdii~l~hGGPi~~p~d~~~~l~~~~~~~G-f~g~Ss~E------RlP~E~ai~~~~~~FK~ 745 (749)
+-|++.|| |.++.|+-.-|.- +.+. ++|.--+- .--+|++++....+++.
T Consensus 290 --~~vi~dGG-Ir~g~Dv~KALaL--GA~aV~iGr~~l~~la~~G~~gv~~~l~~l~~el~~ 346 (361)
T cd04736 290 --KPVLIDSG-IRRGSDIVKALAL--GANAVLLGRATLYGLAARGEAGVSEVLRLLKEEIDR 346 (361)
T ss_pred --CeEEEeCC-CCCHHHHHHHHHc--CCCEEEECHHHHHHHHhcCHHHHHHHHHHHHHHHHH
Confidence 55777776 9999999998855 3333 33332222 22456666666555553
No 238
>PF00809 Pterin_bind: Pterin binding enzyme This Prosite entry is a subset of the Pfam family; InterPro: IPR000489 The ~250-residue pterin-binding domain has been shown to adopt a (beta/alpha)8 barrel fold, which has the overall shape of a distorted cylinder. It has eight alpha-helices stacked around the outside of an inner cylinder of parallel beta-strands. The pterin ring binds at the bottom of the (beta/alpha;)8 barrel in a polar cup-like region that is relatively solvent exposed and fairly negatively charged. The pterin ring is partially buried within the (beta/alpha)8 barrel. The pterin binding residues are highly conserved and include aspartate and asparagine residues located at the C terminus of the beta-strands of the barrel, which are predicted to form hydrogen bonds with the nitrogen and oxygen atoms of the pterin ring [, , ]. Some proteins known to contain a pterin-binding domain are listed below: Prokaryotic and eukaryotic B12-dependent methionine synthase (MetH) (2.1.1.13 from EC), a large, modular protein that catalyzes the transfer of a methyl group from methyltetrahydrofolate (CH3-H4folate) to Hcy to form methionine, using cobalamin as an intermediate methyl carrier. Prokaryotic and eukaryotic dihydropteroate synthase (DHPS) (2.5.1.15 from EC). It catalyzes the condensation of para-aminobenzoic acid (pABA) with 7,8- dihydropterin-pyrophosphate (DHPPP), eliminating pyrophosphate to form 7,8- dihydropteroate which is subsequently converted to tetrahydrofolate. Moorella thermoacetica 5-methyltetrahydrofolate corrinoid/iron sulphur protein methyltransferase (MeTr). It transfers the N5-methyl group from CH3-H4folate to a cob(I)amide centre in another protein, the corrinoid iron sulphur protein. ; GO: 0042558 pteridine-containing compound metabolic process; PDB: 2VP8_B 2BMB_A 2Y5S_B 2Y5J_A 3BOF_B 1Q7Q_B 1Q85_B 1Q7Z_A 1Q7M_A 1Q8A_B ....
Probab=84.81 E-value=6.8 Score=40.31 Aligned_cols=93 Identities=28% Similarity=0.341 Sum_probs=69.8
Q ss_pred HHHHHHhccCcEEEeccCCCcccccccccccCHHHHHHHHHHHHHHHHHhCCCeEEEEccCCCCCHHHHHHHHhhCCCcc
Q 004491 640 EAVKMAKAGADIIVAHMGLTTSGSIGAKTALSLDESVDRVQAIADAAHRINPDAIVLCHGGPISSPSEAEFILKRTKGVH 719 (749)
Q Consensus 640 qa~~Ma~AGaDiiv~h~GlT~gG~~Ga~~~~sl~~~~~~~~~i~~aa~~~~pdii~l~hGGPi~~p~d~~~~l~~~~~~~ 719 (749)
+|++|.++|||||=+..+-|.-|. ...+.++-.+++..+.++.++.++++.+-+-- ..|+-+++.|+. +++
T Consensus 24 ~a~~~~~~GAdiIDIg~~st~p~~----~~v~~~eE~~rl~~~l~~i~~~~~~~plSIDT---~~~~v~~~aL~~--g~~ 94 (210)
T PF00809_consen 24 RAREQVEAGADIIDIGAESTRPGA----TPVSEEEEMERLVPVLQAIREENPDVPLSIDT---FNPEVAEAALKA--GAD 94 (210)
T ss_dssp HHHHHHHTT-SEEEEESSTSSTTS----SSSHHHHHHHHHHHHHHHHHHHHTTSEEEEEE---SSHHHHHHHHHH--TSS
T ss_pred HHHHHHHhcCCEEEecccccCCCC----CcCCHHHHHHHHHHHHHHHhccCCCeEEEEEC---CCHHHHHHHHHc--Ccc
Confidence 389999999999999988886665 46677888888888888888777788877664 489999999987 667
Q ss_pred EEecCcccccchHHHHHHHHHHhhc
Q 004491 720 GFYGASSMERLPVEQAITSTMRQYK 744 (749)
Q Consensus 720 Gf~g~Ss~ERlP~E~ai~~~~~~FK 744 (749)
--.--++++. -..+-+.+++|+
T Consensus 95 ~ind~~~~~~---~~~~~~l~a~~~ 116 (210)
T PF00809_consen 95 IINDISGFED---DPEMLPLAAEYG 116 (210)
T ss_dssp EEEETTTTSS---STTHHHHHHHHT
T ss_pred eEEecccccc---cchhhhhhhcCC
Confidence 7777777776 334555555554
No 239
>PRK05848 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=84.58 E-value=6.8 Score=42.41 Aligned_cols=196 Identities=18% Similarity=0.186 Sum_probs=113.5
Q ss_pred eccccchhhhhhhhcCCcEEEEeccccccccCCccccccccccCchHHHH------H----------hhhhhcCCCCCCc
Q 004491 498 AGAGTGISAKFEEAGGVDLIVLYNSGRFRMAGRGSLAGLLPFADANAVVL------E----------MANEVLPVVKEVP 561 (749)
Q Consensus 498 ~gaGtGlsAk~ae~gGaDli~~ynsGrfR~~G~~SlagllpygdaN~iv~------e----------~~~eilp~v~~tP 561 (749)
+-+|.....+..+.-|..+......|-.=..|-.-+. -.|++.++.. . .++++.-.+++.+
T Consensus 42 v~~G~~~a~~i~~~l~~~~~~~~~dG~~v~~g~~i~~---i~G~a~~ll~~Er~~ln~l~~~SGIAT~t~~~v~~~~~~~ 118 (273)
T PRK05848 42 VFSGEKYALELLEMTGIECVFTIKDGERFKKGDILME---IEGDFSMLLKVERTLLNLLQHSSGIATLTSRYVEALESHK 118 (273)
T ss_pred EEECHHHHHHHHHHcCCEEEEEcCCCCEecCCCEEEE---EEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 3456666666666666655555555554444431111 1233333321 0 1245555555544
Q ss_pred -eEEeeccCCCCCCHHHHHHHHHHcC--ccceecC-CcccccchhhhhhhhhcCCchHHHHHHHHHHHHc---CCccccc
Q 004491 562 -VLAGVCGTDPFRRVDYFLKQLESIG--FFGVQNF-PTVGLFDGNFRQNLEETGMGYGLEVEMIDKAHKM---GLLTTPY 634 (749)
Q Consensus 562 -ViaGv~atDP~~~~~~~l~~lk~~G--f~GV~Nf-PTvgliDG~fR~~LEe~G~gy~~EVemi~~A~~~---gl~T~~y 634 (749)
.|++---|-|.... |.+.--..| +.--.|- .+|-+.|-+.+-. + +. -+.+++++++ ...-..-
T Consensus 119 ~~i~~TRKt~Pg~r~--~~k~Av~~GGg~~HR~gL~d~vlikdnHi~~~-g----~i---~~~v~~~k~~~p~~~~I~VE 188 (273)
T PRK05848 119 VKLLDTRKTRPLLRI--FEKYSVRNGGASNHRLGLDDCLMLKDTHLKHI-K----DL---KEFIQHARKNIPFTAKIEIE 188 (273)
T ss_pred eEEEecCCCCcchhH--HHHHHHHhCCCccccCCchhhhCcCHHHHHHH-C----cH---HHHHHHHHHhCCCCceEEEE
Confidence 45666666665433 222222233 2222233 3666666655422 1 12 4567777765 3456678
Q ss_pred ccCHHHHHHHHhccCcEEEeccCCCcccccccccccCHHHHHHHHHHHHHHHHHhCCCeEEEEccCCCCCHHHHHHHHhh
Q 004491 635 AFNEGEAVKMAKAGADIIVAHMGLTTSGSIGAKTALSLDESVDRVQAIADAAHRINPDAIVLCHGGPISSPSEAEFILKR 714 (749)
Q Consensus 635 vf~~eqa~~Ma~AGaDiiv~h~GlT~gG~~Ga~~~~sl~~~~~~~~~i~~aa~~~~pdii~l~hGGPi~~p~d~~~~l~~ 714 (749)
|-|.|||+.-+++|||+|-.- -.+.++-.+.++. .+..+|++++.+-|| | +|+.+..+. .
T Consensus 189 v~tleea~~A~~~GaDiI~LD-------------n~~~e~l~~~v~~----~~~~~~~~~ieAsGg-I-t~~ni~~ya-~ 248 (273)
T PRK05848 189 CESLEEAKNAMNAGADIVMCD-------------NMSVEEIKEVVAY----RNANYPHVLLEASGN-I-TLENINAYA-K 248 (273)
T ss_pred eCCHHHHHHHHHcCCCEEEEC-------------CCCHHHHHHHHHH----hhccCCCeEEEEECC-C-CHHHHHHHH-H
Confidence 999999999999999988731 3456555544442 355568999999988 4 999999997 4
Q ss_pred CCCccEEecCccc
Q 004491 715 TKGVHGFYGASSM 727 (749)
Q Consensus 715 ~~~~~Gf~g~Ss~ 727 (749)
.++|.+.-+|..
T Consensus 249 -~GvD~IsvG~l~ 260 (273)
T PRK05848 249 -SGVDAISSGSLI 260 (273)
T ss_pred -cCCCEEEeChhh
Confidence 578888777643
No 240
>PRK07807 inosine 5-monophosphate dehydrogenase; Validated
Probab=84.50 E-value=7.5 Score=45.17 Aligned_cols=156 Identities=21% Similarity=0.190 Sum_probs=103.4
Q ss_pred CCcccccHHHHHHHHHHH---hhcCCCeEEeccccc----hhhhhhhhcCCcEEEEeccccccccCCccccccccccCch
Q 004491 471 RPETLQRTQAILSKLKYQ---IDKGLPIIGAGAGTG----ISAKFEEAGGVDLIVLYNSGRFRMAGRGSLAGLLPFADAN 543 (749)
Q Consensus 471 ~~~~~~~r~~il~~L~~~---i~~~~piig~gaGtG----lsAk~ae~gGaDli~~ynsGrfR~~G~~SlagllpygdaN 543 (749)
+.--+.+|++|++.+... ..+|+..+|+.+|+. -.++.-.+.|+|.|++-.+-+. +
T Consensus 190 ~lvGIIT~~DIl~~~~~~~~~~~~g~l~V~aav~~~~~~~~~a~~Lv~aGvd~i~~D~a~~~-----------------~ 252 (479)
T PRK07807 190 RLVGVLTRTGALRATIYTPAVDAAGRLRVAAAVGINGDVAAKARALLEAGVDVLVVDTAHGH-----------------Q 252 (479)
T ss_pred eEEEEEEHHHHHHHhhCCchhhhhhccchHhhhccChhHHHHHHHHHHhCCCEEEEeccCCc-----------------c
Confidence 345567788888766543 345688888888874 2445556689999998766443 6
Q ss_pred HHHHHhhhhhcCCCCCCceEEeeccCCCCCCHHHHHHHHHHcCccceecCCcccccchhhhhhhhhcCCchHHHHHHHHH
Q 004491 544 AVVLEMANEVLPVVKEVPVLAGVCGTDPFRRVDYFLKQLESIGFFGVQNFPTVGLFDGNFRQNLEETGMGYGLEVEMIDK 623 (749)
Q Consensus 544 ~iv~e~~~eilp~v~~tPViaGv~atDP~~~~~~~l~~lk~~Gf~GV~NfPTvgliDG~fR~~LEe~G~gy~~EVemi~~ 623 (749)
.-+.+|-++|-...+++||+||=++| .+=-++|.++|+.+|- ||+=-|+.=..=+-+|.|+ --+..|..
T Consensus 253 ~~~~~~i~~ik~~~p~~~v~agnv~t------~~~a~~l~~aGad~v~----vgig~gsictt~~~~~~~~-p~~~av~~ 321 (479)
T PRK07807 253 EKMLEALRAVRALDPGVPIVAGNVVT------AEGTRDLVEAGADIVK----VGVGPGAMCTTRMMTGVGR-PQFSAVLE 321 (479)
T ss_pred HHHHHHHHHHHHHCCCCeEEeeccCC------HHHHHHHHHcCCCEEE----ECccCCcccccccccCCch-hHHHHHHH
Confidence 77888888888777889999997775 2334556678998873 2222333333334445554 34444544
Q ss_pred HH----HcCC--cccccccCHHHHHHHHhccCcEEEe
Q 004491 624 AH----KMGL--LTTPYAFNEGEAVKMAKAGADIIVA 654 (749)
Q Consensus 624 A~----~~gl--~T~~yvf~~eqa~~Ma~AGaDiiv~ 654 (749)
+. +.|. ..-.=+.++.++.+...+|||.+++
T Consensus 322 ~~~~~~~~~~~via~ggi~~~~~~~~al~~ga~~v~~ 358 (479)
T PRK07807 322 CAAAARELGAHVWADGGVRHPRDVALALAAGASNVMI 358 (479)
T ss_pred HHHHHHhcCCcEEecCCCCCHHHHHHHHHcCCCeeec
Confidence 43 4453 3444577889999999999998875
No 241
>TIGR00433 bioB biotin synthetase. Catalyzes the last step of the biotin biosynthesis pathway.
Probab=84.35 E-value=60 Score=34.38 Aligned_cols=127 Identities=17% Similarity=0.222 Sum_probs=80.3
Q ss_pred HHHHHHHHHcCccceecCCcccccchhhhhhhhhcCCchHHHHHHHHHHHHcCCccc-----ccccCHHHHHHH----Hh
Q 004491 576 DYFLKQLESIGFFGVQNFPTVGLFDGNFRQNLEETGMGYGLEVEMIDKAHKMGLLTT-----PYAFNEGEAVKM----AK 646 (749)
Q Consensus 576 ~~~l~~lk~~Gf~GV~NfPTvgliDG~fR~~LEe~G~gy~~EVemi~~A~~~gl~T~-----~yvf~~eqa~~M----a~ 646 (749)
++.+++||+.|+..|.-..= + +=++.+.+- .+-.|+.=++.++.+++.|+-+. +.-.+.++...+ .+
T Consensus 123 ~e~l~~Lk~aG~~~v~i~~E-~--~~~~~~~i~-~~~s~~~~~~ai~~l~~~Gi~v~~~~i~Gl~et~~d~~~~~~~l~~ 198 (296)
T TIGR00433 123 PEQAKRLKDAGLDYYNHNLD-T--SQEFYSNII-STHTYDDRVDTLENAKKAGLKVCSGGIFGLGETVEDRIGLALALAN 198 (296)
T ss_pred HHHHHHHHHcCCCEEEEccc-C--CHHHHhhcc-CCCCHHHHHHHHHHHHHcCCEEEEeEEEeCCCCHHHHHHHHHHHHh
Confidence 78899999999988854322 1 112223332 35688988999999999999753 234455666554 46
Q ss_pred ccCcEEEeccCCCcccc-cccccccCHHHHHHHHHHHHHHHHHhCCC-eEEEEccCCCCCHHHHHH
Q 004491 647 AGADIIVAHMGLTTSGS-IGAKTALSLDESVDRVQAIADAAHRINPD-AIVLCHGGPISSPSEAEF 710 (749)
Q Consensus 647 AGaDiiv~h~GlT~gG~-~Ga~~~~sl~~~~~~~~~i~~aa~~~~pd-ii~l~hGGPi~~p~d~~~ 710 (749)
.|+|.+..|.=.-..|+ +.....+|.+++.+.++ .++..-|+ .|-+.-|=|..-.+..++
T Consensus 199 l~~~~i~l~~l~p~~gT~l~~~~~~s~~~~~~~ia----~~r~~lp~~~i~~~~~~~~~~~~~~~~ 260 (296)
T TIGR00433 199 LPPESVPINFLVKIKGTPLADNKELSADDALKTIA----LARIIMPKAEIRLAGGREVNMRELQQA 260 (296)
T ss_pred CCCCEEEeeeeEEcCCCccCCCCCCCHHHHHHHHH----HHHHHCCcceEEEeCCcchhhhhhHHH
Confidence 89998888776666665 33445678888875444 34555565 454544445433344334
No 242
>PRK13366 protocatechuate 4,5-dioxygenase subunit beta; Provisional
Probab=84.10 E-value=4.5 Score=43.91 Aligned_cols=178 Identities=12% Similarity=0.105 Sum_probs=100.8
Q ss_pred chHHHHHHHHHHHhcCccEEE-E---ecCCCchHHHHHHH----Hc--CCc--eEEEeCc----hhhhhhhhhCCccCCC
Q 004491 220 TTPCVNAVKERLEKEGYETMV-F---HATGVGGRAMEALV----KE--GFI--QGVLDIT----TTEVADYVVGGVMACD 283 (749)
Q Consensus 220 TTp~V~~~r~~Le~~GyEvlV-F---HATG~GGrAME~Li----~e--G~~--~gVlDlT----ttElaD~l~GGv~saG 283 (749)
|-.+...+++++++.+-||+| | |.++..--.|-.+. .+ +.. -|..|+. -.|++.++
T Consensus 33 ~~~a~~~i~~~i~~~~PDvvVii~~dH~~~f~~d~~P~f~Ig~~~~~~~~~~~~g~~~v~~~~g~~eLA~~i-------- 104 (284)
T PRK13366 33 VFKGYEFSKQWEKEEKPDVIFLVYNDHATAFSLDIIPTFAIGTAAEYQPADEGWGPRPVPKVIGHPDLAAHI-------- 104 (284)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEEcCCcHHhhcccCCCceEEeeCceecCcccccCCCCCCCCCCCHHHHHHH--------
Confidence 346677889999988999998 7 75544332222221 00 000 0111111 01222222
Q ss_pred CchhhhhhhcCCCeEEecCccccccCCCCCCCCccccCCceee-ecCcc-------eEEecCHHHHHHHHHHHHHHHccC
Q 004491 284 SSRFDATIEKKIPLVLSVGALDMVNFGAKDTIPSKFQRRKIHV-HNQQV-------SLMRTTVDENKKFAAFIANKLNQS 355 (749)
Q Consensus 284 p~RL~AA~~~GIPqVVspGalDmVnFG~~dtvPe~f~~R~~~~-HNp~v-------TlmRTt~eE~~~ig~~iA~kLn~a 355 (749)
.+.+.+.|+|...+-.- . ++-|. .+|=+|-...... .=|.| ...-.+++++.++|+.|++-+.+.
T Consensus 105 ---~~~l~~~g~~~~~~~~~-~-lDHG~--~vPL~~l~p~~~~~~ipvVpisvn~~~~p~~~~~r~~~lG~al~~~i~~~ 177 (284)
T PRK13366 105 ---AQSVIQDDFDLTIVNKM-D-VDHGL--TVPLSLMCGQPDAWPCPVIPFAVNVVQYPVPSGRRCFALGQAIRRAVESY 177 (284)
T ss_pred ---HHHHHHCCCCEeecCCC-C-CCccH--HHHHHHhCccccCCCCceEEEeeccCCCCCCCHHHHHHHHHHHHHHHHhc
Confidence 13444678987766521 0 23332 3554443321111 01222 112238999999999999998866
Q ss_pred C-CCeEEEeeCCCCccc-CCCCCCCCChhhhHHHHHHHHHhcccCCCceEEecCCCCCCHHHHHHHHH
Q 004491 356 S-SKIRLCLPQNGISAL-DAPGKPFYDPEATGTLISELRTLIQTNEDRQVKVYPHNINDSEFADALVD 421 (749)
Q Consensus 356 ~-gpv~vllP~~G~S~l-D~~G~pf~DPeAd~al~~~L~~~l~~~~~~~v~~~d~hINDp~FA~a~a~ 421 (749)
. ..-.++|=.||+|+. ..|..-|.+|+=|+.|++.|+.-+. .+ ..+++.++.+.+.+
T Consensus 178 ~~d~rV~iIaSGgLSH~l~~p~~g~~~~~fD~~~l~~l~~d~~-----~l----~~l~~~~~~~~AG~ 236 (284)
T PRK13366 178 DEDLNVQIWGTGGMSHQLQGPRAGLINREWDNAFLDRLIADPD-----GL----SKMPHIDYVREAGS 236 (284)
T ss_pred CcCCCEEEEecCccccCCCCCCCCCCcHHHHHHHHHHHhcCHH-----HH----HcCCHHHHHHHccc
Confidence 4 445688999999997 4433446699999999999965221 12 36667788877665
No 243
>PRK00311 panB 3-methyl-2-oxobutanoate hydroxymethyltransferase; Reviewed
Probab=84.01 E-value=4.8 Score=43.39 Aligned_cols=98 Identities=22% Similarity=0.356 Sum_probs=68.3
Q ss_pred HHHHHHHHHc-CCcccccccCHHHHHHHHhccCcEEEeccCCCcc-ccccccc--ccCHHHHHHHHHHHHHHHHHhCCCe
Q 004491 618 VEMIDKAHKM-GLLTTPYAFNEGEAVKMAKAGADIIVAHMGLTTS-GSIGAKT--ALSLDESVDRVQAIADAAHRINPDA 693 (749)
Q Consensus 618 Vemi~~A~~~-gl~T~~yvf~~eqa~~Ma~AGaDiiv~h~GlT~g-G~~Ga~~--~~sl~~~~~~~~~i~~aa~~~~pdi 693 (749)
+.-+|..|+. ..+++|-+||.-.|+...+||.|+|. .|-..+ -..|..+ .+|++|-+..++.|.+++. +|
T Consensus 4 ~~~lr~~~~~g~~i~~~tayD~~sArl~e~aG~d~i~--vGds~~~~~lG~~Dt~~vtl~em~~h~~~V~r~~~--~p-- 77 (264)
T PRK00311 4 ISDLQKMKQEGEKIVMLTAYDYPFAKLFDEAGVDVIL--VGDSLGMVVLGYDSTLPVTLDDMIYHTKAVARGAP--RA-- 77 (264)
T ss_pred HHHHHHHHhCCCCEEEEeCCCHHHHHHHHHcCCCEEE--ECHHHHHHHcCCCCCCCcCHHHHHHHHHHHHhcCC--CC--
Confidence 3456677766 58999999999999999999999996 342222 2345443 5799999999999977652 22
Q ss_pred EEEE---ccCCCCCHHH----HHHHHhhCCCccEEe
Q 004491 694 IVLC---HGGPISSPSE----AEFILKRTKGVHGFY 722 (749)
Q Consensus 694 i~l~---hGGPi~~p~d----~~~~l~~~~~~~Gf~ 722 (749)
.+++ +|+.=.+|++ +..++++ .+++|..
T Consensus 78 ~vvaD~pfg~y~~~~~~av~~a~r~~~~-aGa~aVk 112 (264)
T PRK00311 78 LVVADMPFGSYQASPEQALRNAGRLMKE-AGAHAVK 112 (264)
T ss_pred cEEEeCCCCCccCCHHHHHHHHHHHHHH-hCCeEEE
Confidence 3334 3444467777 4667765 4677654
No 244
>cd08601 GDPD_SaGlpQ_like Glycerophosphodiester phosphodiesterase domain of Staphylococcus aureus and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in uncharacterized glycerophosphodiester phosphodiesterase (GP-GDE, EC 3.1.4.46) from Staphylococcus aureus, Bacillus subtilis and similar proteins. Members in this family show very high sequence similarity to Escherichia coli periplasmic phosphodiesterase GlpQ, which catalyzes the Ca2+-dependent degradation of periplasmic glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols.
Probab=83.95 E-value=5.4 Score=41.56 Aligned_cols=90 Identities=20% Similarity=0.373 Sum_probs=59.2
Q ss_pred hHHHHHhhhhhcCCCCCCceEEeeccCCCCCCHHHHHHHHHHcCccceecCCcccccchhhhhhhhhcCCchHHHHHHHH
Q 004491 543 NAVVLEMANEVLPVVKEVPVLAGVCGTDPFRRVDYFLKQLESIGFFGVQNFPTVGLFDGNFRQNLEETGMGYGLEVEMID 622 (749)
Q Consensus 543 N~iv~e~~~eilp~v~~tPViaGv~atDP~~~~~~~l~~lk~~Gf~GV~NfPTvgliDG~fR~~LEe~G~gy~~EVemi~ 622 (749)
|.-++...++..|. .|+..-+...+.......+++.++. +..|+. |....+ --++++
T Consensus 156 ~~~~l~~~~~~~p~---~~~~~l~~~~~~~~~~~~~~~~~~~-~~~~~~--~~~~~~-----------------~~~~v~ 212 (256)
T cd08601 156 SKESLKKLHQLNPN---IPLVQLLWYGEGAETYDKWLDEIKE-YAIGIG--PSIADA-----------------DPWMVH 212 (256)
T ss_pred CHHHHHHHHHhCCC---CcEEEEeccCcccccchhHHHHHHh-cCeEeC--Cchhhc-----------------CHHHHH
Confidence 44566666676664 4554444332222234456676766 666653 211111 138999
Q ss_pred HHHHcCCcccccccC-HHHHHHHHhccCcEEEec
Q 004491 623 KAHKMGLLTTPYAFN-EGEAVKMAKAGADIIVAH 655 (749)
Q Consensus 623 ~A~~~gl~T~~yvf~-~eqa~~Ma~AGaDiiv~h 655 (749)
.+|++|+....|..| +++++++.+.|+|.|+..
T Consensus 213 ~~~~~g~~v~~wTvn~~~~~~~l~~~Gvd~IiTD 246 (256)
T cd08601 213 LIHKKGLLVHPYTVNEKADMIRLINWGVDGMFTN 246 (256)
T ss_pred HHHHCCCEEEEEecCCHHHHHHHHhcCCCEEEeC
Confidence 999999999888887 789999999999999864
No 245
>PRK08654 pyruvate carboxylase subunit A; Validated
Probab=83.90 E-value=21 Score=41.52 Aligned_cols=154 Identities=20% Similarity=0.350 Sum_probs=98.2
Q ss_pred hhhhhhcCCcEEEEeccccccccCCccccccccccCchHHHHHhhhhhcCCCCCCceEEeeccCCCCCCHHHHHHHHHHc
Q 004491 506 AKFEEAGGVDLIVLYNSGRFRMAGRGSLAGLLPFADANAVVLEMANEVLPVVKEVPVLAGVCGTDPFRRVDYFLKQLESI 585 (749)
Q Consensus 506 Ak~ae~gGaDli~~ynsGrfR~~G~~SlagllpygdaN~iv~e~~~eilp~v~~tPViaGv~atDP~~~~~~~l~~lk~~ 585 (749)
.+.+.+-|...+.+|..- |+|..-..+++|...+- +-...+.|.+.+..++-.++.
T Consensus 18 iraar~lGi~~V~v~s~~-----------------d~~a~~~~~AD~~~~i~-------~~~~~~syld~~~i~~~a~~~ 73 (499)
T PRK08654 18 MRACRELGIKTVAVYSEA-----------------DKNALFVKYADEAYPIG-------PAPPSKSYLNIERIIDVAKKA 73 (499)
T ss_pred HHHHHHcCCeEEEEeccc-----------------cccccchhhCCEEEEcC-------CCCcccCccCHHHHHHHHHHh
Confidence 456667777777766431 34444445665532221 123357899999999999999
Q ss_pred CccceecCCccccc--chhhhhhhhhcCC---chHHHH--------HHHHHHHHcCCcccccc----cCHHHHHHHH-hc
Q 004491 586 GFFGVQNFPTVGLF--DGNFRQNLEETGM---GYGLEV--------EMIDKAHKMGLLTTPYA----FNEGEAVKMA-KA 647 (749)
Q Consensus 586 Gf~GV~NfPTvgli--DG~fR~~LEe~G~---gy~~EV--------emi~~A~~~gl~T~~yv----f~~eqa~~Ma-~A 647 (749)
|+.+|. |..|.. +..|.+.+|+.|+ |-.-|. .+-+.+.+.|+-+.||. .+.+|+.+.+ +-
T Consensus 74 ~~daI~--pg~gflsE~~~~a~~~e~~gi~~iGps~~~i~~~~DK~~~k~~l~~~GVpv~p~~~~~v~~~~e~~~~a~~i 151 (499)
T PRK08654 74 GADAIH--PGYGFLAENPEFAKACEKAGIVFIGPSSDVIEAMGSKINAKKLMKKAGVPVLPGTEEGIEDIEEAKEIAEEI 151 (499)
T ss_pred CCCEEE--ECCCccccCHHHHHHHHHCCCcEECCCHHHHHHhCCHHHHHHHHHHcCcCCCCCcCcCCCCHHHHHHHHHHh
Confidence 998884 433433 2478899999997 444443 45567899999999974 5678887765 44
Q ss_pred cCcEEEeccCCCcccccccccccCHHHHHHHHHHHHHHHH
Q 004491 648 GADIIVAHMGLTTSGSIGAKTALSLDESVDRVQAIADAAH 687 (749)
Q Consensus 648 GaDiiv~h~GlT~gG~~Ga~~~~sl~~~~~~~~~i~~aa~ 687 (749)
|--+|+== ..-||..|.....+-+|..+..+.....+.
T Consensus 152 gyPvvIKp--~~GgGG~Gv~iv~~~~eL~~a~~~~~~~a~ 189 (499)
T PRK08654 152 GYPVIIKA--SAGGGGIGMRVVYSEEELEDAIESTQSIAQ 189 (499)
T ss_pred CCCEEEEe--CCCCCCCeEEEeCCHHHHHHHHHHHHHHHH
Confidence 55544422 223577887777777766665555544343
No 246
>PRK07455 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=83.78 E-value=16 Score=37.06 Aligned_cols=113 Identities=15% Similarity=0.068 Sum_probs=73.8
Q ss_pred CCCHHHHHHHHHHcCccceecCCcccccchhhhhhhhhcCCchHHHHHHHHHHHHcCCcccccccCHHHHHHHHhccCcE
Q 004491 572 FRRVDYFLKQLESIGFFGVQNFPTVGLFDGNFRQNLEETGMGYGLEVEMIDKAHKMGLLTTPYAFNEGEAVKMAKAGADI 651 (749)
Q Consensus 572 ~~~~~~~l~~lk~~Gf~GV~NfPTvgliDG~fR~~LEe~G~gy~~EVemi~~A~~~gl~T~~yvf~~eqa~~Ma~AGaDi 651 (749)
+... +.++...+.|-.||. -| .++.|+ +..++++++..+|=|+|++|+.+..++|||.
T Consensus 71 vl~~-d~~~~A~~~gAdgv~-~p------------------~~~~~~--~~~~~~~~~~~i~G~~t~~e~~~A~~~Gady 128 (187)
T PRK07455 71 ILTL-EDLEEAIAAGAQFCF-TP------------------HVDPEL--IEAAVAQDIPIIPGALTPTEIVTAWQAGASC 128 (187)
T ss_pred EEcH-HHHHHHHHcCCCEEE-CC------------------CCCHHH--HHHHHHcCCCEEcCcCCHHHHHHHHHCCCCE
Confidence 4444 567777778877762 11 123333 3445555555545599999999999999999
Q ss_pred EEeccCCCcccccccccccCHHHHHHHHHHHHHHHHHhCCCeEEEEccCCCCCHHHHHHHHhhCCCccEEecCccc
Q 004491 652 IVAHMGLTTSGSIGAKTALSLDESVDRVQAIADAAHRINPDAIVLCHGGPISSPSEAEFILKRTKGVHGFYGASSM 727 (749)
Q Consensus 652 iv~h~GlT~gG~~Ga~~~~sl~~~~~~~~~i~~aa~~~~pdii~l~hGGPi~~p~d~~~~l~~~~~~~Gf~g~Ss~ 727 (749)
|-.+..-+ ...+ +.+++.++.-|++-++.=|| -+++++..+++ .+++|.-..|.+
T Consensus 129 v~~Fpt~~---------~~G~--------~~l~~~~~~~~~ipvvaiGG--I~~~n~~~~l~--aGa~~vav~s~i 183 (187)
T PRK07455 129 VKVFPVQA---------VGGA--------DYIKSLQGPLGHIPLIPTGG--VTLENAQAFIQ--AGAIAVGLSGQL 183 (187)
T ss_pred EEECcCCc---------ccCH--------HHHHHHHhhCCCCcEEEeCC--CCHHHHHHHHH--CCCeEEEEehhc
Confidence 99854211 1111 22444455556777888888 58999999995 477888777765
No 247
>cd00429 RPE Ribulose-5-phosphate 3-epimerase (RPE). This enzyme catalyses the interconversion of D-ribulose 5-phosphate (Ru5P) into D-xylulose 5-phosphate, as part of the Calvin cycle (reductive pentose phosphate pathway) in chloroplasts and in the oxidative pentose phosphate pathway. In the Calvin cycle Ru5P is phosphorylated by phosphoribulose kinase to ribulose-1,5-bisphosphate, which in turn is used by RubisCO (ribulose-1,5-bisphosphate carboxylase/oxygenase) to incorporate CO2 as the central step in carbohydrate synthesis.
Probab=83.46 E-value=21 Score=35.44 Aligned_cols=123 Identities=25% Similarity=0.216 Sum_probs=72.4
Q ss_pred EEeeccCCCCCCHHHHHHHHHHcCccceecCCcccccchhhhhhhhhcCCchHHHHHHHHHHHHcCCcccccccC-H-HH
Q 004491 563 LAGVCGTDPFRRVDYFLKQLESIGFFGVQNFPTVGLFDGNFRQNLEETGMGYGLEVEMIDKAHKMGLLTTPYAFN-E-GE 640 (749)
Q Consensus 563 iaGv~atDP~~~~~~~l~~lk~~Gf~GV~NfPTvgliDG~fR~~LEe~G~gy~~EVemi~~A~~~gl~T~~yvf~-~-eq 640 (749)
..++.+-|++. ..+.++++.+.|..-|+= ...||.|-++.+ +|+ ..++-|+..-+ -.+.+.+..+ + +.
T Consensus 3 ~~~~~~~d~~~-~~~~~~~~~~~G~~~i~l----~~~d~~~~~~~~---~~~-~~~~~i~~~~~-~~~~v~l~~~d~~~~ 72 (211)
T cd00429 3 APSILSADFAN-LGEELKRLEEAGADWIHI----DVMDGHFVPNLT---FGP-PVVKALRKHTD-LPLDVHLMVENPERY 72 (211)
T ss_pred eeeeecCCHHH-HHHHHHHHHHcCCCEEEE----ecccCCCCCccc---cCH-HHHHHHHhhCC-CcEEEEeeeCCHHHH
Confidence 34566777775 556788899998877662 356666555443 333 34444443221 1122223333 2 46
Q ss_pred HHHHHhccCcEEEeccCCCcccccccccccCHHHHHHHHHHHHHHHHHhCCCeEEEEccCCCCCHHHHHHHHhh
Q 004491 641 AVKMAKAGADIIVAHMGLTTSGSIGAKTALSLDESVDRVQAIADAAHRINPDAIVLCHGGPISSPSEAEFILKR 714 (749)
Q Consensus 641 a~~Ma~AGaDiiv~h~GlT~gG~~Ga~~~~sl~~~~~~~~~i~~aa~~~~pdii~l~hGGPi~~p~d~~~~l~~ 714 (749)
++.+.++|+|.+.+|.+-+ ++. .+..+.+++.+-.+.+.|| |-...+.++.+...
T Consensus 73 ~~~~~~~g~dgv~vh~~~~-------------~~~----~~~~~~~~~~~~~~g~~~~--~~~~~~~~~~~~~~ 127 (211)
T cd00429 73 IEAFAKAGADIITFHAEAT-------------DHL----HRTIQLIKELGMKAGVALN--PGTPVEVLEPYLDE 127 (211)
T ss_pred HHHHHHcCCCEEEECccch-------------hhH----HHHHHHHHHCCCeEEEEec--CCCCHHHHHHHHhh
Confidence 7777899999999998632 122 2225556667778888886 44445666666544
No 248
>cd00311 TIM Triosephosphate isomerase (TIM) is a glycolytic enzyme that catalyzes the interconversion of dihydroxyacetone phosphate and D-glyceraldehyde-3-phosphate. The reaction is very efficient and requires neither cofactors nor metal ions. TIM, usually homodimeric, but in some organisms tetrameric, is ubiqitous and conserved in function across eukaryotes, bacteria and archaea.
Probab=83.35 E-value=2.8 Score=44.49 Aligned_cols=162 Identities=20% Similarity=0.311 Sum_probs=96.2
Q ss_pred EEeccccc-hhhhhhhhcCCcEEEEeccccccccCCccccccccccCchHHHHHhhhhhcCCCCCCceEEeeccCCCCCC
Q 004491 496 IGAGAGTG-ISAKFEEAGGVDLIVLYNSGRFRMAGRGSLAGLLPFADANAVVLEMANEVLPVVKEVPVLAGVCGTDPFRR 574 (749)
Q Consensus 496 ig~gaGtG-lsAk~ae~gGaDli~~ynsGrfR~~G~~SlagllpygdaN~iv~e~~~eilp~v~~tPViaGv~atDP~~~ 574 (749)
..-||.|| +|+.....-|+++.++=.|-|=+. |+..|+.+-.-.+..+-. .=+||+ |..++...
T Consensus 66 ~~~Ga~TGevS~~mL~d~G~~~viiGHSERR~~-----------f~Et~~~i~~Kv~~a~~~-gl~pIv---CiGE~~~~ 130 (242)
T cd00311 66 EDSGAFTGEISAEMLKDAGAKYVIIGHSERRQY-----------FGETDEDVAKKVKAALEA-GLTPIL---CVGETLEE 130 (242)
T ss_pred ccCCCCcCcCCHHHHHHcCCCEEEeCcccccCc-----------CCCCcHHHHHHHHHHHHC-CCEEEE---EeCCCHHH
Confidence 34577777 689999999999999988888665 788888887765433322 224554 33333211
Q ss_pred HHHHHHHHHHcCccceecCCcccccchhhhhhhhhcCCchHHHHHHHHHHHHcCCcccccccCHHHHHHHHhccCcEEEe
Q 004491 575 VDYFLKQLESIGFFGVQNFPTVGLFDGNFRQNLEETGMGYGLEVEMIDKAHKMGLLTTPYAFNEGEAVKMAKAGADIIVA 654 (749)
Q Consensus 575 ~~~~l~~lk~~Gf~GV~NfPTvgliDG~fR~~LEe~G~gy~~EVemi~~A~~~gl~T~~yvf~~eqa~~Ma~AGaDiiv~ 654 (749)
-+ . |+. .+.+..--+..+--+ +....++++
T Consensus 131 r~--------~---------------~~~--------------~~~~~~Ql~~~l~~~-------------~~~~~~iIA 160 (242)
T cd00311 131 RE--------A---------------GKT--------------EEVVAAQLAAVLAGV-------------EDLAPVVIA 160 (242)
T ss_pred HH--------c---------------CCH--------------HHHHHHHHHHHHhcc-------------hhhcCeEEE
Confidence 00 0 000 111111000000000 011234444
Q ss_pred c-cCCCcccccccccccCHHHHHHHHHHHHHHHHHhCC---CeEEEEccCCCCCHHHHHHHHhhCCCccEEe-cCcccc
Q 004491 655 H-MGLTTSGSIGAKTALSLDESVDRVQAIADAAHRINP---DAIVLCHGGPISSPSEAEFILKRTKGVHGFY-GASSME 728 (749)
Q Consensus 655 h-~GlT~gG~~Ga~~~~sl~~~~~~~~~i~~aa~~~~p---dii~l~hGGPi~~p~d~~~~l~~~~~~~Gf~-g~Ss~E 728 (749)
. .=| .||..+..|.+++-+..+.|.+...+... +-+-+.|||-|+. +++..+++. +++||+. |+.|++
T Consensus 161 YEPvW----AIGtG~~as~~~~~ev~~~ir~~l~~~~~~~~~~~~IlYGGSV~~-~N~~~l~~~-~~vDG~LVG~Asl~ 233 (242)
T cd00311 161 YEPVW----AIGTGKTASPEQAQEVHAFIRKLLAELYGEVAEKVRILYGGSVNP-ENAAELLAQ-PDIDGVLVGGASLK 233 (242)
T ss_pred ECCHH----HhCCCCCCCHHHHHHHHHHHHHHHHHhcccccCceeEEECCCCCH-HHHHHHhcC-CCCCEEEeehHhhC
Confidence 3 333 24555677999888888888888776541 3456779999977 999999966 8899986 444553
No 249
>PRK05581 ribulose-phosphate 3-epimerase; Validated
Probab=83.17 E-value=9.3 Score=38.56 Aligned_cols=124 Identities=25% Similarity=0.260 Sum_probs=77.3
Q ss_pred eEEeeccCCCCCCHHHHHHHHHHcCccceecCCcccccchhhhhhhhhcCCchHHHHHHHHHHHHcCCcccc-cccCH-H
Q 004491 562 VLAGVCGTDPFRRVDYFLKQLESIGFFGVQNFPTVGLFDGNFRQNLEETGMGYGLEVEMIDKAHKMGLLTTP-YAFNE-G 639 (749)
Q Consensus 562 ViaGv~atDP~~~~~~~l~~lk~~Gf~GV~NfPTvgliDG~fR~~LEe~G~gy~~EVemi~~A~~~gl~T~~-yvf~~-e 639 (749)
+..++.+.||.. ..+.++++.+.|..=|+= +..||.|.++.+ +++ ..++.|+.... -.+.+. +++++ +
T Consensus 6 ~~~s~~~~~~~~-~~~~~~~~~~~G~~~i~l----~~~d~~~~~~~~---~~~-~~~~~i~~~~~-~~~~v~l~v~d~~~ 75 (220)
T PRK05581 6 IAPSILSADFAR-LGEEVKAVEAAGADWIHV----DVMDGHFVPNLT---IGP-PVVEAIRKVTK-LPLDVHLMVENPDR 75 (220)
T ss_pred EEcchhcCCHHH-HHHHHHHHHHcCCCEEEE----eCccCCcCCCcC---cCH-HHHHHHHhcCC-CcEEEEeeeCCHHH
Confidence 566788899887 555889999999766652 577888877655 333 34555543211 112222 23343 2
Q ss_pred HHHHHHhccCcEEEeccCCCcccccccccccCHHHHHHHHHHHHHHHHHhCCCeEEEEccCCCCCHHHHHHHHhh
Q 004491 640 EAVKMAKAGADIIVAHMGLTTSGSIGAKTALSLDESVDRVQAIADAAHRINPDAIVLCHGGPISSPSEAEFILKR 714 (749)
Q Consensus 640 qa~~Ma~AGaDiiv~h~GlT~gG~~Ga~~~~sl~~~~~~~~~i~~aa~~~~pdii~l~hGGPi~~p~d~~~~l~~ 714 (749)
..+...++|+|.+++|.+-. ++. .+..+.+++.+-.+.+.|+ |-+..+.++.+.+.
T Consensus 76 ~i~~~~~~g~d~v~vh~~~~-------------~~~----~~~~~~~~~~~~~~g~~~~--~~t~~e~~~~~~~~ 131 (220)
T PRK05581 76 YVPDFAKAGADIITFHVEAS-------------EHI----HRLLQLIKSAGIKAGLVLN--PATPLEPLEDVLDL 131 (220)
T ss_pred HHHHHHHcCCCEEEEeeccc-------------hhH----HHHHHHHHHcCCEEEEEEC--CCCCHHHHHHHHhh
Confidence 55566799999999998611 111 2236666777777788884 55566777766544
No 250
>PRK04180 pyridoxal biosynthesis lyase PdxS; Provisional
Probab=83.12 E-value=4 Score=44.65 Aligned_cols=179 Identities=22% Similarity=0.295 Sum_probs=98.7
Q ss_pred cchhhhhhhhcCCcEEEEec---cccccccCCccccccccccCchHHHHHhhhhhcCCCCCCceEEeeccCCCCCCHHHH
Q 004491 502 TGISAKFEEAGGVDLIVLYN---SGRFRMAGRGSLAGLLPFADANAVVLEMANEVLPVVKEVPVLAGVCGTDPFRRVDYF 578 (749)
Q Consensus 502 tGlsAk~ae~gGaDli~~yn---sGrfR~~G~~SlagllpygdaN~iv~e~~~eilp~v~~tPViaGv~atDP~~~~~~~ 578 (749)
+---||.||..|+|=|.++- |-| |..| =+++|. .=+.+ ++|...| ++||++=+- - ..-.-
T Consensus 26 ~~~~a~iae~~g~~~v~~~~~~psd~-~~~g---g~~Rm~---~p~~I----~aIk~~V-~iPVigk~R-i----gh~~E 88 (293)
T PRK04180 26 NAEQAKIAEEAGAVAVMALERVPADI-RAAG---GVARMA---DPKMI----EEIMDAV-SIPVMAKAR-I----GHFVE 88 (293)
T ss_pred CHHHHHHHHHhChHHHHHccCCCchH-hhcC---CeeecC---CHHHH----HHHHHhC-CCCeEEeeh-h----hHHHH
Confidence 45679999999999887641 222 3333 111111 11222 2555566 789875321 1 11122
Q ss_pred HHHHHHcCccceecCCcccccchhhhhhhhhcCCchHHHHHHHHHHHHc-CCcccccccCHHHHHHHHhccCcEEEeccC
Q 004491 579 LKQLESIGFFGVQNFPTVGLFDGNFRQNLEETGMGYGLEVEMIDKAHKM-GLLTTPYAFNEGEAVKMAKAGADIIVAHMG 657 (749)
Q Consensus 579 l~~lk~~Gf~GV~NfPTvgliDG~fR~~LEe~G~gy~~EVemi~~A~~~-gl~T~~yvf~~eqa~~Ma~AGaDiiv~h~G 657 (749)
.+.|.++|.- +||.+-|... .+ +.++.-+++ +.+-++=+-|.+||.+-.++|||+|=..
T Consensus 89 a~~L~~~GvD---------iID~Te~lrp------ad---~~~~~~K~~f~~~fmad~~~l~EAlrai~~GadmI~Tt-- 148 (293)
T PRK04180 89 AQILEALGVD---------YIDESEVLTP------AD---EEYHIDKWDFTVPFVCGARNLGEALRRIAEGAAMIRTK-- 148 (293)
T ss_pred HHHHHHcCCC---------EEeccCCCCc------hH---HHHHHHHHHcCCCEEccCCCHHHHHHHHHCCCCeeecc--
Confidence 3445555543 3354444333 22 344444443 6666666778899999999999998544
Q ss_pred CCcccccccccccCHHHHHHHHHHH----------------------------HHHHHHhCCCeEE-EEccCCCCCHHHH
Q 004491 658 LTTSGSIGAKTALSLDESVDRVQAI----------------------------ADAAHRINPDAIV-LCHGGPISSPSEA 708 (749)
Q Consensus 658 lT~gG~~Ga~~~~sl~~~~~~~~~i----------------------------~~aa~~~~pdii~-l~hGGPi~~p~d~ 708 (749)
|.-|.. .+-|+++.+..| .+..++..+=.++ ++-|| |.+|+|+
T Consensus 149 ----ge~gtg---~v~~av~h~r~~~~~i~~L~gyt~~~~~~~a~~~~~~~elL~ei~~~~~iPVV~~AeGG-I~TPeda 220 (293)
T PRK04180 149 ----GEAGTG---NVVEAVRHMRQINGEIRRLTSMSEDELYTAAKELQAPYELVKEVAELGRLPVVNFAAGG-IATPADA 220 (293)
T ss_pred ----CCCCCc---cHHHHHHHHHHHHHHHHHHhCCCHHHHHhhccccCCCHHHHHHHHHhCCCCEEEEEeCC-CCCHHHH
Confidence 112221 122222222111 1111222122243 46655 9999999
Q ss_pred HHHHhhCCCccEEecCccc
Q 004491 709 EFILKRTKGVHGFYGASSM 727 (749)
Q Consensus 709 ~~~l~~~~~~~Gf~g~Ss~ 727 (749)
..+++ .+++|++-+|.+
T Consensus 221 a~vme--~GAdgVaVGSaI 237 (293)
T PRK04180 221 ALMMQ--LGADGVFVGSGI 237 (293)
T ss_pred HHHHH--hCCCEEEEcHHh
Confidence 99995 589999999998
No 251
>cd01311 PDC_hydrolase 2-pyrone-4,6-dicarboxylic acid (PDC) hydrolase hydrolyzes PDC to yield 4-oxalomesaconic acid (OMA) or its tautomer, 4-carboxy-2-hydroxymuconic acid (CHM). This reaction is part of the protocatechuate (PCA) 4,5-cleavage pathway. PCA is one of the most important intermediate metabolites in the bacterial pathways for various phenolic compounds, including lignin, which is the most abundant aromatic material in nature.
Probab=83.03 E-value=13 Score=38.88 Aligned_cols=145 Identities=17% Similarity=0.181 Sum_probs=85.0
Q ss_pred ccCchHHHHHhhhhhcCCCCCCceEEeeccCCCCCCHHHHHHHHHHcCccceecCCcccccchhhhhhhhhcCCchHHH-
Q 004491 539 FADANAVVLEMANEVLPVVKEVPVLAGVCGTDPFRRVDYFLKQLESIGFFGVQNFPTVGLFDGNFRQNLEETGMGYGLE- 617 (749)
Q Consensus 539 ygdaN~iv~e~~~eilp~v~~tPViaGv~atDP~~~~~~~l~~lk~~Gf~GV~NfPTvgliDG~fR~~LEe~G~gy~~E- 617 (749)
|+..|+-+++..++ + +=+.|++.-||.......|+++.+.||.||---|... |. . -+.+
T Consensus 53 ~~~~n~~~~~~~~~--~-----~r~~g~~~~~p~~~~~~~l~~~~~~g~rGvRl~~~~~---~~-~---------~~~~~ 112 (263)
T cd01311 53 YGADNSNLLDALAS--N-----GKARGGATVDPRTTTDAELKEMHDAGVRGVRFNFLFG---GV-D---------NKDEL 112 (263)
T ss_pred cCCchHHHHHHHhh--C-----CCeEEEEEECCCCCCHHHHHHHHHCCCeEEEEecccC---CC-C---------CHHHH
Confidence 45578877777663 2 2234555566766668999999999999996334321 11 1 1112
Q ss_pred HHHHHHHHHcCCcccccccCH--HHHHHH-HhccCcEEEeccCCCcccccccccccCHHHHHHHHHHHHHHHHHhCCCeE
Q 004491 618 VEMIDKAHKMGLLTTPYAFNE--GEAVKM-AKAGADIIVAHMGLTTSGSIGAKTALSLDESVDRVQAIADAAHRINPDAI 694 (749)
Q Consensus 618 Vemi~~A~~~gl~T~~yvf~~--eqa~~M-a~AGaDiiv~h~GlT~gG~~Ga~~~~sl~~~~~~~~~i~~aa~~~~pdii 694 (749)
.++++++.+.|+.-.-.+... .+...+ .+.+..|++.|+|+..... |.. ...-++..+.+ -+|+|.
T Consensus 113 ~~~~~~~~~~gl~v~~~~~~~~l~~l~~l~~~~~l~ivldH~G~p~~~~-~~~--------~~~~~~~l~~l--~~pNV~ 181 (263)
T cd01311 113 DEIAKRAAELGWHVQVYFDAVDLPALLPFLQKLPVAVVIDHFGRPDVTK-GVD--------GAEFAALLKLI--EEGNVW 181 (263)
T ss_pred HHHHHHHHHcCCEEEEEeCHhhHHHHHHHHHHCCCCEEEECCCCCCCCC-CCC--------CHhHHHHHHHH--hcCCEE
Confidence 368888888887655444322 333333 4557889999999764332 111 11224444545 378887
Q ss_pred EEEccCCC-----CCHHHHHHHHhh
Q 004491 695 VLCHGGPI-----SSPSEAEFILKR 714 (749)
Q Consensus 695 ~l~hGGPi-----~~p~d~~~~l~~ 714 (749)
+=+.|=+- ..+++++.+++.
T Consensus 182 ~k~Sg~~~~~~~~~~~~~~~~~~~~ 206 (263)
T cd01311 182 VKVSGPYRLSVKQEAYADVIAFARQ 206 (263)
T ss_pred EEecchhhcCCCCCCHHHHHHHHHH
Confidence 77665221 235667776653
No 252
>PF01729 QRPTase_C: Quinolinate phosphoribosyl transferase, C-terminal domain; InterPro: IPR002638 Quinolinate phosphoribosyl transferase (QPRTase) or nicotinate-nucleotide pyrophosphorylase 2.4.2.19 from EC is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to give rise to nicotinic acid mononucleotide (NaMN), pyrophosphate and carbon dioxide [, ]. Unlike IPR004393 from INTERPRO, this domain also includes the molybdenum transport system protein ModD.; GO: 0004514 nicotinate-nucleotide diphosphorylase (carboxylating) activity, 0009435 NAD biosynthetic process; PDB: 3C2O_A 3C2F_A 3C2E_A 3C2R_A 3C2V_A 1QPN_E 1QPO_A 1QPQ_F 1QPR_E 2I14_D ....
Probab=83.03 E-value=4.2 Score=40.96 Aligned_cols=141 Identities=22% Similarity=0.205 Sum_probs=84.5
Q ss_pred cCCCCCCc-eEEeeccCCCCCCHHHHHHHHHHcCccceec----CCcccccchhhhhhhhhcCCchHHHHHHHHHHHHcC
Q 004491 554 LPVVKEVP-VLAGVCGTDPFRRVDYFLKQLESIGFFGVQN----FPTVGLFDGNFRQNLEETGMGYGLEVEMIDKAHKMG 628 (749)
Q Consensus 554 lp~v~~tP-ViaGv~atDP~~~~~~~l~~lk~~Gf~GV~N----fPTvgliDG~fR~~LEe~G~gy~~EVemi~~A~~~g 628 (749)
.-.+++++ ++++--=|-|. +..+.++--..| |-.| -+-..||.-+....+ | | -.+.++.+++.-
T Consensus 9 v~~a~~~~~~i~~TRKt~Pg--~r~l~~~Av~~G--Gg~~hR~gl~d~ili~~nHi~~~---g-~---i~~av~~~~~~~ 77 (169)
T PF01729_consen 9 VDAAKGTKIRIADTRKTIPG--LRPLEKYAVLAG--GGDNHRLGLSDMILIKDNHIAFF---G-G---IEEAVKAARQAA 77 (169)
T ss_dssp HHHTTTSSSEEEEGSGS-TT--THHHHHHHHHHT--TSBHHHSSTTSSEEE-HHHHHHH---S-S---HHHHHHHHHHHS
T ss_pred HHHhCCCCEEEeecCCCCcc--cCHHHHHHHHhc--CceeEECCCCCcEEehHHHHHHh---C-C---HHHHHHHHHHhC
Confidence 33444556 58888888888 444444443333 3334 222334443344433 1 1 445666666643
Q ss_pred Ccc---cccccCHHHHHHHHhccCcEEEeccCCCcccccccccccCHHHHHHHHHHHHHHHHHhCCCeEEEEccCCCCCH
Q 004491 629 LLT---TPYAFNEGEAVKMAKAGADIIVAHMGLTTSGSIGAKTALSLDESVDRVQAIADAAHRINPDAIVLCHGGPISSP 705 (749)
Q Consensus 629 l~T---~~yvf~~eqa~~Ma~AGaDiiv~h~GlT~gG~~Ga~~~~sl~~~~~~~~~i~~aa~~~~pdii~l~hGGPi~~p 705 (749)
=.. .-=|.|.||+++.+++|+|+|-.- -.|.+ .++++.+..+..++.+.+.+.|| -++
T Consensus 78 ~~~~~I~VEv~~~ee~~ea~~~g~d~I~lD-------------~~~~~----~~~~~v~~l~~~~~~v~ie~SGG--I~~ 138 (169)
T PF01729_consen 78 PEKKKIEVEVENLEEAEEALEAGADIIMLD-------------NMSPE----DLKEAVEELRELNPRVKIEASGG--ITL 138 (169)
T ss_dssp TTTSEEEEEESSHHHHHHHHHTT-SEEEEE-------------S-CHH----HHHHHHHHHHHHTTTSEEEEESS--SST
T ss_pred CCCceEEEEcCCHHHHHHHHHhCCCEEEec-------------CcCHH----HHHHHHHHHhhcCCcEEEEEECC--CCH
Confidence 332 234678999999999999999775 23453 44555555678899999999999 678
Q ss_pred HHHHHHHhhCCCccEEecCcc
Q 004491 706 SEAEFILKRTKGVHGFYGASS 726 (749)
Q Consensus 706 ~d~~~~l~~~~~~~Gf~g~Ss 726 (749)
+.+..+. . +++|.+.-+|.
T Consensus 139 ~ni~~ya-~-~gvD~isvg~~ 157 (169)
T PF01729_consen 139 ENIAEYA-K-TGVDVISVGSL 157 (169)
T ss_dssp TTHHHHH-H-TT-SEEEECHH
T ss_pred HHHHHHH-h-cCCCEEEcChh
Confidence 8888776 4 56888865553
No 253
>cd06298 PBP1_CcpA_like Ligand-binding domain of the catabolite control protein A (CcpA), which functions as the major transcriptional regulator of carbon catabolite repression/regulation. Ligand-binding domain of the catabolite control protein A (CcpA), which functions as the major transcriptional regulator of carbon catabolite repression/regulation (CCR), a process in which enzymes necessary for the metabolism of alternative sugars are inhibited in the presence of glucose. In gram-positive bacteria, CCR is controlled by HPr, a phosphoenolpyruvate:sugar phsophotrasnferase system (PTS) and a transcriptional regulator CcpA. Moreover, CcpA can regulate sporulation and antibiotic resistance as well as play a role in virulence development of certain pathogens such as the group A streptococcus. The ligand binding domain of CcpA is a member of the LacI-GalR family of bacterial transcription regulators.
Probab=82.75 E-value=28 Score=34.92 Aligned_cols=118 Identities=15% Similarity=0.259 Sum_probs=62.5
Q ss_pred HHHHHHHHHHHhcCccE---EEEec---CCCchHHHHHHHHcCCceEEEeCchhhhhhhhhCCccCCCCchhhhhhhcC-
Q 004491 222 PCVNAVKERLEKEGYET---MVFHA---TGVGGRAMEALVKEGFIQGVLDITTTEVADYVVGGVMACDSSRFDATIEKK- 294 (749)
Q Consensus 222 p~V~~~r~~Le~~GyEv---lVFHA---TG~GGrAME~Li~eG~~~gVlDlTttElaD~l~GGv~saGp~RL~AA~~~G- 294 (749)
-.....++.+++.|++. .++-. .-.+-.+|+++.+.+-++|++=. ..+.+- |+ +++.-++|
T Consensus 134 ~r~~gf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ai~~~-~d~~a~----~~-------~~~l~~~g~ 201 (268)
T cd06298 134 ERLAGYKEALSEANIEFDESLIFEGDYTYESGYELAEELLEDGKPTAAFVT-DDELAI----GI-------LNAAQDAGL 201 (268)
T ss_pred HHHHHHHHHHHHcCCCCCHHHeEeCCCChhHHHHHHHHHhcCCCCCEEEEc-CcHHHH----HH-------HHHHHHcCC
Confidence 44566678888888653 12211 12234678888765448888742 222221 22 33444455
Q ss_pred -CCeEEecCccccccCCCCCCCCccccCCceeeecCcceEEecCHHHHHH-HHHHHHHHHccCCC-CeEEEeeC
Q 004491 295 -IPLVLSVGALDMVNFGAKDTIPSKFQRRKIHVHNQQVSLMRTTVDENKK-FAAFIANKLNQSSS-KIRLCLPQ 365 (749)
Q Consensus 295 -IPqVVspGalDmVnFG~~dtvPe~f~~R~~~~HNp~vTlmRTt~eE~~~-ig~~iA~kLn~a~g-pv~vllP~ 365 (749)
+|+=++..+.|-..+. ..+.|.+|.++..++|+-+ ..+.+.++++.-+. +.++++|.
T Consensus 202 ~vp~di~vvg~d~~~~~--------------~~~~~~lttv~~~~~~~g~~a~~~l~~~~~~~~~~~~~~~~~~ 261 (268)
T cd06298 202 KVPEDFEIIGFNNTKLA--------------SMVRPQLTSVTQPLYDIGAVAMRLLTKLMNKEEVENKQVILPH 261 (268)
T ss_pred CCccceEEEeeccHHHH--------------hhcCCCcceEcCCHHHHHHHHHHHHHHHHhCCCCCccceeecc
Confidence 4554444444421111 1145788999999888744 55556666654332 23455553
No 254
>cd07939 DRE_TIM_NifV Streptomyces rubellomurinus FrbC and related proteins, catalytic TIM barrel domain. FrbC (NifV) of Streptomyces rubellomurinus catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate and CoA, a reaction similar to one catalyzed by homocitrate synthase. The gene encoding FrbC is one of several genes required for the biosynthesis of FR900098, a potent antimalarial antibiotic. This protein is also required for assembly of the nitrogenase MoFe complex but its exact role is unknown. This family also includes the NifV proteins of Heliobacterium chlorum and Gluconacetobacter diazotrophicus, which appear to be orthologous to FrbC. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarbox
Probab=82.70 E-value=14 Score=39.03 Aligned_cols=140 Identities=11% Similarity=0.073 Sum_probs=88.6
Q ss_pred CCHHHHHHHHHHcCccceec-CCcccccchhhhhhhhhcCCchHHHHHHHHHHHHc--CCcccccc-cCHHHHHHHHhcc
Q 004491 573 RRVDYFLKQLESIGFFGVQN-FPTVGLFDGNFRQNLEETGMGYGLEVEMIDKAHKM--GLLTTPYA-FNEGEAVKMAKAG 648 (749)
Q Consensus 573 ~~~~~~l~~lk~~Gf~GV~N-fPTvgliDG~fR~~LEe~G~gy~~EVemi~~A~~~--gl~T~~yv-f~~eqa~~Ma~AG 648 (749)
-..-++++.|-+.||.-|.= ||..+ +.|.|.++..++. +.-..+++ .++++.+...++|
T Consensus 20 ~~k~~i~~~L~~~Gv~~iE~g~p~~~-----------------~~~~e~~~~l~~~~~~~~~~~~~r~~~~~v~~a~~~g 82 (259)
T cd07939 20 EEKLAIARALDEAGVDEIEVGIPAMG-----------------EEEREAIRAIVALGLPARLIVWCRAVKEDIEAALRCG 82 (259)
T ss_pred HHHHHHHHHHHHcCCCEEEEecCCCC-----------------HHHHHHHHHHHhcCCCCEEEEeccCCHHHHHHHHhCC
Confidence 34567888999999876543 56542 2455677777764 34445566 6888998889999
Q ss_pred CcEEEeccCCCcccccccccccCHHHHHHHHHHHHHHHHHhCCCeEEEEccCCCCCHHHHHHHHhhC--CCccEEecCcc
Q 004491 649 ADIIVAHMGLTTSGSIGAKTALSLDESVDRVQAIADAAHRINPDAIVLCHGGPISSPSEAEFILKRT--KGVHGFYGASS 726 (749)
Q Consensus 649 aDiiv~h~GlT~gG~~Ga~~~~sl~~~~~~~~~i~~aa~~~~pdii~l~hGGPi~~p~d~~~~l~~~--~~~~Gf~g~Ss 726 (749)
+|.|-+..... --.+-.+-..|.+++++.+.++.+.|++....+-+-|--.+-.+|+.+..+.+.. -+++.++=.-|
T Consensus 83 ~~~i~i~~~~s-~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~G~~~i~l~DT 161 (259)
T cd07939 83 VTAVHISIPVS-DIHLAHKLGKDRAWVLDQLRRLVGRAKDRGLFVSVGAEDASRADPDFLIEFAEVAQEAGADRLRFADT 161 (259)
T ss_pred cCEEEEEEecC-HHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEeeccCCCCCHHHHHHHHHHHHHCCCCEEEeCCC
Confidence 99877765332 1111123346788888888888888888877665444444456677766666432 23555554444
Q ss_pred cccc
Q 004491 727 MERL 730 (749)
Q Consensus 727 ~ERl 730 (749)
+-.+
T Consensus 162 ~G~~ 165 (259)
T cd07939 162 VGIL 165 (259)
T ss_pred CCCC
Confidence 4433
No 255
>PRK06096 molybdenum transport protein ModD; Provisional
Probab=82.57 E-value=11 Score=41.22 Aligned_cols=85 Identities=16% Similarity=0.182 Sum_probs=58.5
Q ss_pred HHHHHHHc--CCcccccccCHHHHHHHHhccCcEEEeccCCCcccccccccccCHHHHHHHHHHHHHHHHHhCCCeEEEE
Q 004491 620 MIDKAHKM--GLLTTPYAFNEGEAVKMAKAGADIIVAHMGLTTSGSIGAKTALSLDESVDRVQAIADAAHRINPDAIVLC 697 (749)
Q Consensus 620 mi~~A~~~--gl~T~~yvf~~eqa~~Ma~AGaDiiv~h~GlT~gG~~Ga~~~~sl~~~~~~~~~i~~aa~~~~pdii~l~ 697 (749)
.++++++. ...-.-=|-|.|||++.+++|||+|.. .-.|.++..+.++ ..++.+|.+++-+
T Consensus 179 av~~~r~~~~~~kIeVEv~tleqa~ea~~agaDiI~L-------------Dn~~~e~l~~av~----~~~~~~~~~~lea 241 (284)
T PRK06096 179 AINQLRRHAPEKKIVVEADTPKEAIAALRAQPDVLQL-------------DKFSPQQATEIAQ----IAPSLAPHCTLSL 241 (284)
T ss_pred HHHHHHHhCCCCCEEEECCCHHHHHHHHHcCCCEEEE-------------CCCCHHHHHHHHH----HhhccCCCeEEEE
Confidence 34444443 222333456999999999999999998 2456666554443 2344578999999
Q ss_pred ccCCCCCHHHHHHHHhhCCCccEEecCc
Q 004491 698 HGGPISSPSEAEFILKRTKGVHGFYGAS 725 (749)
Q Consensus 698 hGGPi~~p~d~~~~l~~~~~~~Gf~g~S 725 (749)
-|| -+++.+..+- . +++|.+..++
T Consensus 242 SGG--I~~~ni~~yA-~-tGvD~Is~ga 265 (284)
T PRK06096 242 AGG--INLNTLKNYA-D-CGIRLFITSA 265 (284)
T ss_pred ECC--CCHHHHHHHH-h-cCCCEEEECc
Confidence 999 6899888886 4 5777775554
No 256
>PRK08591 acetyl-CoA carboxylase biotin carboxylase subunit; Validated
Probab=82.50 E-value=28 Score=39.27 Aligned_cols=166 Identities=16% Similarity=0.191 Sum_probs=103.8
Q ss_pred eEEeccccchhhhhhhhcCCcEEEEeccccccccCCccccccccccCchHHHHHhhhhhcCCCCCCceEEeeccCCCCCC
Q 004491 495 IIGAGAGTGISAKFEEAGGVDLIVLYNSGRFRMAGRGSLAGLLPFADANAVVLEMANEVLPVVKEVPVLAGVCGTDPFRR 574 (749)
Q Consensus 495 iig~gaGtGlsAk~ae~gGaDli~~ynsGrfR~~G~~SlagllpygdaN~iv~e~~~eilp~v~~tPViaGv~atDP~~~ 574 (749)
|+|.|--.=..+|.+.+-|.+.+++|+... +|..-..++++...+- | -...+.|.+
T Consensus 7 i~g~g~~a~~i~~aa~~~G~~vv~~~~~~d-----------------~~a~~~~~ad~~~~~~---~----~~~~~~y~d 62 (451)
T PRK08591 7 IANRGEIALRIIRACKELGIKTVAVHSTAD-----------------RDALHVQLADEAVCIG---P----APSKKSYLN 62 (451)
T ss_pred EECCCHHHHHHHHHHHHcCCeEEEEcChhh-----------------ccCCCHhHCCEEEEeC---C----CCcccccCC
Confidence 455554455567788888999888765422 1222224444421110 0 122467888
Q ss_pred HHHHHHHHHHcCccceecCCcccccchhhhhhhhhcCC---chHHHH--------HHHHHHHHcCCcccccc----cCHH
Q 004491 575 VDYFLKQLESIGFFGVQNFPTVGLFDGNFRQNLEETGM---GYGLEV--------EMIDKAHKMGLLTTPYA----FNEG 639 (749)
Q Consensus 575 ~~~~l~~lk~~Gf~GV~NfPTvgliDG~fR~~LEe~G~---gy~~EV--------emi~~A~~~gl~T~~yv----f~~e 639 (749)
.+..++-+++.++.+|.-..+.-.-++.+...+|+.|+ |-+.|. .|-+.+++.|+-+.||. -+.+
T Consensus 63 ~~~l~~~a~~~~id~I~p~~~~~~e~~~~~~~~e~~gi~~~g~~~~~~~~~~DK~~~r~~l~~~gIp~pp~~~~~v~~~~ 142 (451)
T PRK08591 63 IPAIISAAEITGADAIHPGYGFLSENADFAEICEDSGFTFIGPSAETIRLMGDKVTAKATMKKAGVPVVPGSDGPVDDEE 142 (451)
T ss_pred HHHHHHHHHHhCCCEEEECCCccccCHHHHHHHHHCCCceECcCHHHHHHhcCHHHHHHHHHHcCCCCCCCcccccCCHH
Confidence 99999999999999986443333334678889999997 434443 35566899999998873 4778
Q ss_pred HHHHHH-hccCcEEEeccCCCcccccccccccCHHHHHHHHHHHHHHH
Q 004491 640 EAVKMA-KAGADIIVAHMGLTTSGSIGAKTALSLDESVDRVQAIADAA 686 (749)
Q Consensus 640 qa~~Ma-~AGaDiiv~h~GlT~gG~~Ga~~~~sl~~~~~~~~~i~~aa 686 (749)
|+.+.+ +-|--+++==. .-+|+.|.....+.+|..+.++.+...+
T Consensus 143 ~~~~~~~~~g~PvvvKP~--~g~gs~Gv~iv~~~~el~~~~~~~~~~~ 188 (451)
T PRK08591 143 EALAIAKEIGYPVIIKAT--AGGGGRGMRVVRTEAELEKAFSMARAEA 188 (451)
T ss_pred HHHHHHHHcCCCEEEEEC--CCCCCceEEEECCHHHHHHHHHHHHHHH
Confidence 877765 44555544221 2257788777778787776666665443
No 257
>cd04732 HisA HisA. Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene.
Probab=82.44 E-value=13 Score=37.94 Aligned_cols=156 Identities=10% Similarity=0.111 Sum_probs=84.2
Q ss_pred HHHHHHHHHHhhcCCCeEE-eccccchhhhhhhhcCCcEEEEeccccccccCCccccccccccCchHHHHHhhh-hhcCC
Q 004491 479 QAILSKLKYQIDKGLPIIG-AGAGTGISAKFEEAGGVDLIVLYNSGRFRMAGRGSLAGLLPFADANAVVLEMAN-EVLPV 556 (749)
Q Consensus 479 ~~il~~L~~~i~~~~piig-~gaGtGlsAk~ae~gGaDli~~ynsGrfR~~G~~SlagllpygdaN~iv~e~~~-eilp~ 556 (749)
.++++++++.+ +.|++. +|.-+--.|+-.-+.|||.++ +++..+. - ..-..++..++++ .|.+.
T Consensus 62 ~~~i~~i~~~~--~~pv~~~GgI~~~e~~~~~~~~Gad~vv-igs~~l~--------d---p~~~~~i~~~~g~~~i~~s 127 (234)
T cd04732 62 LELIEEIVKAV--GIPVQVGGGIRSLEDIERLLDLGVSRVI-IGTAAVK--------N---PELVKELLKEYGGERIVVG 127 (234)
T ss_pred HHHHHHHHHhc--CCCEEEeCCcCCHHHHHHHHHcCCCEEE-ECchHHh--------C---hHHHHHHHHHcCCceEEEE
Confidence 45777777776 466654 566666666766678999986 2332221 1 0112233333332 22222
Q ss_pred CC---CCceEEeeccCCCCCCHHHHHHHHHHcCccceecCCcccccchhhhhhhhhcCCchHHHHHHHHHHHHc---CCc
Q 004491 557 VK---EVPVLAGVCGTDPFRRVDYFLKQLESIGFFGVQNFPTVGLFDGNFRQNLEETGMGYGLEVEMIDKAHKM---GLL 630 (749)
Q Consensus 557 v~---~tPViaGv~atDP~~~~~~~l~~lk~~Gf~GV~NfPTvgliDG~fR~~LEe~G~gy~~EVemi~~A~~~---gl~ 630 (749)
+. ...+.-|.. ...-.+...+++++.+.|+.++.=... --+|. .-|++ .++|++.++. =+.
T Consensus 128 id~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ga~~iii~~~--~~~g~--------~~g~~--~~~i~~i~~~~~ipvi 194 (234)
T cd04732 128 LDAKDGKVATKGWL-ETSEVSLEELAKRFEELGVKAIIYTDI--SRDGT--------LSGPN--FELYKELAAATGIPVI 194 (234)
T ss_pred EEeeCCEEEECCCe-eecCCCHHHHHHHHHHcCCCEEEEEee--cCCCc--------cCCCC--HHHHHHHHHhcCCCEE
Confidence 11 011111110 112346678999999999998832110 01222 12233 4556665543 333
Q ss_pred ccccccCHHHHHHHHhccCcEEEeccCCCcc
Q 004491 631 TTPYAFNEGEAVKMAKAGADIIVAHMGLTTS 661 (749)
Q Consensus 631 T~~yvf~~eqa~~Ma~AGaDiiv~h~GlT~g 661 (749)
.-.=+++.++.+++.+.|||-+++--++-.+
T Consensus 195 ~~GGi~~~~di~~~~~~Ga~gv~vg~~~~~~ 225 (234)
T cd04732 195 ASGGVSSLDDIKALKELGVAGVIVGKALYEG 225 (234)
T ss_pred EecCCCCHHHHHHHHHCCCCEEEEeHHHHcC
Confidence 3444688899999999999999886666443
No 258
>PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated
Probab=82.37 E-value=56 Score=36.31 Aligned_cols=166 Identities=23% Similarity=0.251 Sum_probs=94.4
Q ss_pred cccHHHHHHHHHHHhhcCCCeEEeccccchhhhhhhhcCCcEEEEeccccccccCCcccc-ccccccCchHHHHHhhhhh
Q 004491 475 LQRTQAILSKLKYQIDKGLPIIGAGAGTGISAKFEEAGGVDLIVLYNSGRFRMAGRGSLA-GLLPFADANAVVLEMANEV 553 (749)
Q Consensus 475 ~~~r~~il~~L~~~i~~~~piig~gaGtGlsAk~ae~gGaDli~~ynsGrfR~~G~~Sla-gllpygdaN~iv~e~~~ei 553 (749)
-++.+++++-++.-.+.|-++|=+|-|.|+ |.+|+- |+..+. -.|..+.+
T Consensus 21 ~f~~~~~~~i~~~L~~aGv~~IEvg~~~g~------------------------g~~s~~~g~~~~~-----~~e~i~~~ 71 (337)
T PRK08195 21 QYTLEQVRAIARALDAAGVPVIEVTHGDGL------------------------GGSSFNYGFGAHT-----DEEYIEAA 71 (337)
T ss_pred ccCHHHHHHHHHHHHHcCCCEEEeecCCCC------------------------CCccccCCCCCCC-----HHHHHHHH
Confidence 356777777766666666666655555543 112222 222222 13344445
Q ss_pred cCCCCCCceEEeeccCCCCCCHHHHHHHHHHcCccceecCCcccccchhhhhhhhhcCCchHHHHHHHHHHHHcCCcccc
Q 004491 554 LPVVKEVPVLAGVCGTDPFRRVDYFLKQLESIGFFGVQNFPTVGLFDGNFRQNLEETGMGYGLEVEMIDKAHKMGLLTTP 633 (749)
Q Consensus 554 lp~v~~tPViaGv~atDP~~~~~~~l~~lk~~Gf~GV~NfPTvgliDG~fR~~LEe~G~gy~~EVemi~~A~~~gl~T~~ 633 (749)
.+.++++.+.+ ++ +|-+--.+.++...+.|...|. +.+ .+.+. +.=.+.|+.|+++|+.+..
T Consensus 72 ~~~~~~~~~~~-ll--~pg~~~~~dl~~a~~~gvd~ir-i~~----------~~~e~----~~~~~~i~~ak~~G~~v~~ 133 (337)
T PRK08195 72 AEVVKQAKIAA-LL--LPGIGTVDDLKMAYDAGVRVVR-VAT----------HCTEA----DVSEQHIGLARELGMDTVG 133 (337)
T ss_pred HHhCCCCEEEE-Ee--ccCcccHHHHHHHHHcCCCEEE-EEE----------ecchH----HHHHHHHHHHHHCCCeEEE
Confidence 55566665443 22 3422223568888899987653 221 11111 1226789999999986654
Q ss_pred c-----ccCH----HHHHHHHhccCcEEEeccCCCcccccccccccCHHHHHHHHHHHHHHHHHhCCCeEEEEcc
Q 004491 634 Y-----AFNE----GEAVKMAKAGADIIVAHMGLTTSGSIGAKTALSLDESVDRVQAIADAAHRINPDAIVLCHG 699 (749)
Q Consensus 634 y-----vf~~----eqa~~Ma~AGaDiiv~h~GlT~gG~~Ga~~~~sl~~~~~~~~~i~~aa~~~~pdii~l~hG 699 (749)
+ ..++ +++++|.++|||.|++ -=|.| ..+-++..+++..+.+ +.+|++-+=+|+
T Consensus 134 ~l~~a~~~~~e~l~~~a~~~~~~Ga~~i~i--~DT~G-------~~~P~~v~~~v~~l~~---~l~~~i~ig~H~ 196 (337)
T PRK08195 134 FLMMSHMAPPEKLAEQAKLMESYGAQCVYV--VDSAG-------ALLPEDVRDRVRALRA---ALKPDTQVGFHG 196 (337)
T ss_pred EEEeccCCCHHHHHHHHHHHHhCCCCEEEe--CCCCC-------CCCHHHHHHHHHHHHH---hcCCCCeEEEEe
Confidence 3 3555 6688889999998754 22322 3456666655555543 235788887887
No 259
>COG3836 HpcH 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase [Carbohydrate transport and metabolism]
Probab=82.27 E-value=40 Score=36.34 Aligned_cols=168 Identities=20% Similarity=0.220 Sum_probs=106.6
Q ss_pred HHHHHHhhcCCCeEE--eccccchhhhhhhhcCCcEEEEeccccccccCCccccccccccCchHHHHHhhhhhcCCCCCC
Q 004491 483 SKLKYQIDKGLPIIG--AGAGTGISAKFEEAGGVDLIVLYNSGRFRMAGRGSLAGLLPFADANAVVLEMANEVLPVVKEV 560 (749)
Q Consensus 483 ~~L~~~i~~~~piig--~gaGtGlsAk~ae~gGaDli~~ynsGrfR~~G~~SlagllpygdaN~iv~e~~~eilp~v~~t 560 (749)
.+||+++++|+|.|| .+....+++-.....|=||+++=-. + -.|.=+.++.+-+-+.|.-+ .
T Consensus 6 n~fK~~L~~g~~qiGlw~~l~~p~~~Ei~A~aGfDwl~iD~E-------H--------apnd~~sl~~qL~a~~~~~~-~ 69 (255)
T COG3836 6 NSFKAALAAGRPQIGLWLSLPDPYMAEILATAGFDWLLIDGE-------H--------APNDLQSLLHQLQAVAAYAS-P 69 (255)
T ss_pred chHHHHHhCCCceEEeeecCCcHHHHHHHHhcCCCEEEeccc-------c--------cCccHHHHHHHHHHhhccCC-C
Confidence 358899999999999 5777889999999999999996200 0 01111222223233333321 2
Q ss_pred ceEEeeccCCCCCCHHHHHHHHHHcCccceecCCcccccchhhhhhhhhcCCchHHHHHHHHHHHHcCCcccccccCHHH
Q 004491 561 PVLAGVCGTDPFRRVDYFLKQLESIGFFGVQNFPTVGLFDGNFRQNLEETGMGYGLEVEMIDKAHKMGLLTTPYAFNEGE 640 (749)
Q Consensus 561 PViaGv~atDP~~~~~~~l~~lk~~Gf~GV~NfPTvgliDG~fR~~LEe~G~gy~~EVemi~~A~~~gl~T~~yvf~~eq 640 (749)
||+= |--.-...++|+.++|..++ -+|.|=|.||
T Consensus 70 pvVR------~p~g~~~~Ikq~LD~GAqtl----------------------------------------liPmV~s~eq 103 (255)
T COG3836 70 PVVR------PPVGDPVMIKQLLDIGAQTL----------------------------------------LIPMVDTAEQ 103 (255)
T ss_pred Ceee------CCCCCHHHHHHHHcccccee----------------------------------------eeeccCCHHH
Confidence 3331 22234567888888887654 2799999999
Q ss_pred HHHHHhccCcEEEeccCCCcccccccccccCHHHHHHHHHHHHHHHHHhCCCeEEEEccCCCCCHHHHHHHHhhCCCccE
Q 004491 641 AVKMAKAGADIIVAHMGLTTSGSIGAKTALSLDESVDRVQAIADAAHRINPDAIVLCHGGPISSPSEAEFILKRTKGVHG 720 (749)
Q Consensus 641 a~~Ma~AGaDiiv~h~GlT~gG~~Ga~~~~sl~~~~~~~~~i~~aa~~~~pdii~l~hGGPi~~p~d~~~~l~~~~~~~G 720 (749)
|+++.+| +..--.|-...=|---.+.+-..|.|....-|.++.+|.-=---..-+....|+ .+.++||
T Consensus 104 Ar~~V~A-----------~rYPP~G~Rgvg~~~arAsr~~~i~dyl~~An~~~~~lvqiEtr~gl~nLDaIa-aveGVDg 171 (255)
T COG3836 104 ARQAVAA-----------TRYPPLGERGVGSALARASRFGRIADYLAQANDEICLLVQIETRAGLDNLDAIA-AVEGVDG 171 (255)
T ss_pred HHHHHHh-----------ccCCCCCccccchhhhhhhhcCCHHHHHHhcccceEEEEEEccHHHHHHHHHHH-ccCCCCe
Confidence 9999987 122222222111233345555678888888999999887644444445666777 5599999
Q ss_pred EecC
Q 004491 721 FYGA 724 (749)
Q Consensus 721 f~g~ 724 (749)
-|.|
T Consensus 172 vFiG 175 (255)
T COG3836 172 VFIG 175 (255)
T ss_pred EEEC
Confidence 6554
No 260
>PF07302 AroM: AroM protein; InterPro: IPR010843 This family consists of several bacterial and archaeal AroM proteins. In Escherichia coli the aroM gene is cotranscribed with aroL []. The function of this family is unknown.
Probab=82.25 E-value=9.9 Score=40.19 Aligned_cols=112 Identities=27% Similarity=0.344 Sum_probs=70.9
Q ss_pred cccHHHHHHHHHHHhhcCCCeEEeccccchhhhhhhhcCCcEEEEeccccccccCCccccccccccCchHHHHHhhhhhc
Q 004491 475 LQRTQAILSKLKYQIDKGLPIIGAGAGTGISAKFEEAGGVDLIVLYNSGRFRMAGRGSLAGLLPFADANAVVLEMANEVL 554 (749)
Q Consensus 475 ~~~r~~il~~L~~~i~~~~piig~gaGtGlsAk~ae~gGaDli~~ynsGrfR~~G~~SlagllpygdaN~iv~e~~~eil 554 (749)
.++|+.|..+|+++|++ .|+.|+|+|+.+++|.|.---
T Consensus 66 ~ls~~~v~~~lq~~i~~-----------------le~~G~d~illlCTG~F~~l~------------------------- 103 (221)
T PF07302_consen 66 VLSKKKVEPRLQACIAQ-----------------LEAQGYDVILLLCTGEFPGLT------------------------- 103 (221)
T ss_pred EEEHHHHHHHHHHHHHH-----------------HHHCCCCEEEEeccCCCCCCC-------------------------
Confidence 47899999999999874 688999999999999998311
Q ss_pred CCCCCCceEEeeccCCCCCCHHHHHHHHHHcCccceecCCcccccchhhhhhhhhcCCchHHHHHHHHHHHHcCC-----
Q 004491 555 PVVKEVPVLAGVCGTDPFRRVDYFLKQLESIGFFGVQNFPTVGLFDGNFRQNLEETGMGYGLEVEMIDKAHKMGL----- 629 (749)
Q Consensus 555 p~v~~tPViaGv~atDP~~~~~~~l~~lk~~Gf~GV~NfPTvgliDG~fR~~LEe~G~gy~~EVemi~~A~~~gl----- 629 (749)
.+.|+|. |.+-+..+...+-..+=-||. .|. -++.-..-++|+..+-
T Consensus 104 ---~~~~lle------P~ril~~lV~al~~~~~vGVi-vP~------------------~eQ~~~~~~kW~~l~~~~~~a 155 (221)
T PF07302_consen 104 ---ARNPLLE------PDRILPPLVAALVGGHQVGVI-VPL------------------PEQIAQQAEKWQPLGNPVVVA 155 (221)
T ss_pred ---CCcceee------hHHhHHHHHHHhcCCCeEEEE-ecC------------------HHHHHHHHHHHHhcCCCeEEE
Confidence 1223332 555555555555444333332 121 0111234455555432
Q ss_pred cccccccCHH----HHHHHHhccCcEEEecc
Q 004491 630 LTTPYAFNEG----EAVKMAKAGADIIVAHM 656 (749)
Q Consensus 630 ~T~~yvf~~e----qa~~Ma~AGaDiiv~h~ 656 (749)
..-||..+.+ -|++|.+.|||+||.|+
T Consensus 156 ~asPy~~~~~~l~~Aa~~L~~~gadlIvLDC 186 (221)
T PF07302_consen 156 AASPYEGDEEELAAAARELAEQGADLIVLDC 186 (221)
T ss_pred EeCCCCCCHHHHHHHHHHHHhcCCCEEEEEC
Confidence 2346666665 57788899999999995
No 261
>CHL00162 thiG thiamin biosynthesis protein G; Validated
Probab=82.22 E-value=8.5 Score=41.61 Aligned_cols=96 Identities=20% Similarity=0.277 Sum_probs=70.2
Q ss_pred HHHHHHHH---HcCCcccccccC-HHHHHHHHhccCcEEEeccCCCcccccccccccCHHHHHHHHHHHHHHHHHhCCCe
Q 004491 618 VEMIDKAH---KMGLLTTPYAFN-EGEAVKMAKAGADIIVAHMGLTTSGSIGAKTALSLDESVDRVQAIADAAHRINPDA 693 (749)
Q Consensus 618 Vemi~~A~---~~gl~T~~yvf~-~eqa~~Ma~AGaDiiv~h~GlT~gG~~Ga~~~~sl~~~~~~~~~i~~aa~~~~pdi 693 (749)
+|.++.|+ +.||--+||+.+ +-=|+++.++|+..+-+- |--||....+.=.+.++.+- .++++
T Consensus 124 ~etl~Aae~Lv~eGF~VlPY~~~D~v~a~rLed~Gc~aVMPl-----gsPIGSg~Gl~n~~~l~~i~--------e~~~v 190 (267)
T CHL00162 124 IGTLKAAEFLVKKGFTVLPYINADPMLAKHLEDIGCATVMPL-----GSPIGSGQGLQNLLNLQIII--------ENAKI 190 (267)
T ss_pred HHHHHHHHHHHHCCCEEeecCCCCHHHHHHHHHcCCeEEeec-----cCcccCCCCCCCHHHHHHHH--------HcCCC
Confidence 34444443 679999999985 688999999999987653 44566665655444443332 26787
Q ss_pred EEEEccCCCCCHHHHHHHHhhCCCccEEecCccccc
Q 004491 694 IVLCHGGPISSPSEAEFILKRTKGVHGFYGASSMER 729 (749)
Q Consensus 694 i~l~hGGPi~~p~d~~~~l~~~~~~~Gf~g~Ss~ER 729 (749)
-|+|-+ -|.+|+|+...++- ++||-..+|.+=+
T Consensus 191 pVivdA-GIgt~sDa~~AmEl--GaDgVL~nSaIak 223 (267)
T CHL00162 191 PVIIDA-GIGTPSEASQAMEL--GASGVLLNTAVAQ 223 (267)
T ss_pred cEEEeC-CcCCHHHHHHHHHc--CCCEEeecceeec
Confidence 777765 59999999999955 7899999998764
No 262
>TIGR01305 GMP_reduct_1 guanosine monophosphate reductase, eukaryotic. A deep split separates two families of GMP reductase. This family includes both eukaryotic and some proteobacterial sequences, while the other family contains other bacterial sequences.
Probab=82.15 E-value=8.3 Score=43.16 Aligned_cols=113 Identities=15% Similarity=0.168 Sum_probs=68.7
Q ss_pred HHHHHHHHHcCccceecCCcccccc---hhhhhhhhhcCCchHHHHHHHHHHHHc--CCccc-ccccCHHHHHHHHhccC
Q 004491 576 DYFLKQLESIGFFGVQNFPTVGLFD---GNFRQNLEETGMGYGLEVEMIDKAHKM--GLLTT-PYAFNEGEAVKMAKAGA 649 (749)
Q Consensus 576 ~~~l~~lk~~Gf~GV~NfPTvgliD---G~fR~~LEe~G~gy~~EVemi~~A~~~--gl~T~-~yvf~~eqa~~Ma~AGa 649 (749)
.+++++|.+.| .=|-+-.|| |+=... +++|+.-++. +.+-+ .-|-++|+|+.+.+|||
T Consensus 109 ~er~~~L~~a~-----~~~d~iviD~AhGhs~~~-----------i~~ik~ir~~~p~~~viaGNV~T~e~a~~Li~aGA 172 (343)
T TIGR01305 109 LEKMTSILEAV-----PQLKFICLDVANGYSEHF-----------VEFVKLVREAFPEHTIMAGNVVTGEMVEELILSGA 172 (343)
T ss_pred HHHHHHHHhcC-----CCCCEEEEECCCCcHHHH-----------HHHHHHHHhhCCCCeEEEecccCHHHHHHHHHcCC
Confidence 46778888775 113334455 543322 3555555553 34433 34999999999999999
Q ss_pred cEEEeccC----CCcccccccccccCHHHHHHHHHHHHHHHHHhCC-CeEEEEccCCCCCHHHHHHHHh
Q 004491 650 DIIVAHMG----LTTSGSIGAKTALSLDESVDRVQAIADAAHRINP-DAIVLCHGGPISSPSEAEFILK 713 (749)
Q Consensus 650 Diiv~h~G----lT~gG~~Ga~~~~sl~~~~~~~~~i~~aa~~~~p-dii~l~hGGPi~~p~d~~~~l~ 713 (749)
|.|.+-+| .|+.-..|+.. -.+..+.+.++..+. ++-|++.|| |..+-|+-.-|.
T Consensus 173 D~ikVgiGpGSicttR~~~Gvg~--------pqltAv~~~a~aa~~~~v~VIaDGG-Ir~~gDI~KALA 232 (343)
T TIGR01305 173 DIVKVGIGPGSVCTTRTKTGVGY--------PQLSAVIECADAAHGLKGHIISDGG-CTCPGDVAKAFG 232 (343)
T ss_pred CEEEEcccCCCcccCceeCCCCc--------CHHHHHHHHHHHhccCCCeEEEcCC-cCchhHHHHHHH
Confidence 99988776 22222222221 133445555555544 777888877 888888877663
No 263
>PRK14567 triosephosphate isomerase; Provisional
Probab=82.07 E-value=3.5 Score=44.19 Aligned_cols=161 Identities=25% Similarity=0.347 Sum_probs=95.8
Q ss_pred CCCeEEeccccc-hhhhhhhhcCCcEEEEeccccccccCCccccccccccCchHHHHHhhhhhcCCCCCCceEEeeccCC
Q 004491 492 GLPIIGAGAGTG-ISAKFEEAGGVDLIVLYNSGRFRMAGRGSLAGLLPFADANAVVLEMANEVLPVVKEVPVLAGVCGTD 570 (749)
Q Consensus 492 ~~piig~gaGtG-lsAk~ae~gGaDli~~ynsGrfR~~G~~SlagllpygdaN~iv~e~~~eilp~v~~tPViaGv~atD 570 (749)
+-....-|+-|| +||.....-|+++.++=.|-|=+. |+..|++|-.-.+..|-. .=+|++ |..+
T Consensus 63 nv~~~~~Ga~TGEvS~~mLkd~G~~yviiGHSERR~~-----------f~Etd~~v~~Kv~~al~~-gl~pI~---CiGE 127 (253)
T PRK14567 63 NITFYDDGAYTGEISARMLEDIGCDYLLIGHSERRSL-----------FAESDEDVFKKLNKIIDT-TITPVV---CIGE 127 (253)
T ss_pred ccccccCCCccCcCCHHHHHHcCCCEEEECcccccCc-----------cCCCHHHHHHHHHHHHHC-CCEEEE---EcCC
Confidence 333444577777 689999999999999988888765 789998887765443332 234554 3333
Q ss_pred CCC------CHHHHHHHHHHcCccceecCCcccccchhhhhhhhhcCCchHHHHHHHHHHHHcCCcccccccCHHHHHHH
Q 004491 571 PFR------RVDYFLKQLESIGFFGVQNFPTVGLFDGNFRQNLEETGMGYGLEVEMIDKAHKMGLLTTPYAFNEGEAVKM 644 (749)
Q Consensus 571 P~~------~~~~~l~~lk~~Gf~GV~NfPTvgliDG~fR~~LEe~G~gy~~EVemi~~A~~~gl~T~~yvf~~eqa~~M 644 (749)
+.. ..+...+||+. .| -.+ +.++
T Consensus 128 t~eere~g~~~~vv~~Ql~~---------------------~l----------------------~~i----~~~~---- 156 (253)
T PRK14567 128 SLDDRQSGKLKQVLATQLSL---------------------IL----------------------ENL----SVEQ---- 156 (253)
T ss_pred cHHHHHcCCHHHHHHHHHHH---------------------HH----------------------ccC----CHHH----
Confidence 321 11222222211 11 000 0111
Q ss_pred HhccCcEEEec-cCCCcccccccccccCHHHHHHHHHHHHHHHHHh----CCCeEEEEccCCCCCHHHHHHHHhhCCCcc
Q 004491 645 AKAGADIIVAH-MGLTTSGSIGAKTALSLDESVDRVQAIADAAHRI----NPDAIVLCHGGPISSPSEAEFILKRTKGVH 719 (749)
Q Consensus 645 a~AGaDiiv~h-~GlT~gG~~Ga~~~~sl~~~~~~~~~i~~aa~~~----~pdii~l~hGGPi~~p~d~~~~l~~~~~~~ 719 (749)
...++++. .-| .||..+..|.+++-+..+.|.+...+. .++ +.+.|||-+ +|++++.+++. +++|
T Consensus 157 ---~~~ivIAYEPvW----AIGTG~~as~e~i~~~~~~IR~~l~~~~~~~a~~-v~IlYGGSV-~~~N~~~l~~~-~diD 226 (253)
T PRK14567 157 ---LAKVVIAYEPVW----AIGTGVVASLEQIQETHQFIRSLLAKVDERLAKN-IKIVYGGSL-KAENAKDILSL-PDVD 226 (253)
T ss_pred ---hCCEEEEECCHH----HhCCCCCCCHHHHHHHHHHHHHHHHhhccccccc-ceEEEcCcC-CHHHHHHHHcC-CCCC
Confidence 12344444 223 345555677777766666666544432 333 567799999 99999999966 8899
Q ss_pred EEe-cCcccc
Q 004491 720 GFY-GASSME 728 (749)
Q Consensus 720 Gf~-g~Ss~E 728 (749)
|+. |+.|++
T Consensus 227 G~LVGgasL~ 236 (253)
T PRK14567 227 GGLIGGASLK 236 (253)
T ss_pred EEEeehhhhc
Confidence 975 555553
No 264
>cd00452 KDPG_aldolase KDPG and KHG aldolase. This family belongs to the class I adolases whose reaction mechanism involves Schiff base formation between a substrate carbonyl and lysine residue in the active site. 2-keto-3-deoxy-6-phosphogluconate (KDPG) aldolase, is best known for its role in the Entner-Doudoroff pathway of bacteria, where it catalyzes the reversible cleavage of KDPG to pyruvate and glyceraldehyde-3-phosphate. 2-keto-4-hydroxyglutarate (KHG) aldolase, which has enzymatic specificity toward glyoxylate, forming KHG in the presence of pyruvate, and is capable of regulating glyoxylate levels in the glyoxylate bypass, an alternate pathway when bacteria are grown on acetate carbon sources.
Probab=82.07 E-value=22 Score=35.81 Aligned_cols=122 Identities=20% Similarity=0.225 Sum_probs=76.9
Q ss_pred CCceEEeeccCCCCCCHHHHHHHHHHcCccceecCCcccccchhhhhhhhhcCCchHHHHHHHHHHHHc-C-C-cccccc
Q 004491 559 EVPVLAGVCGTDPFRRVDYFLKQLESIGFFGVQNFPTVGLFDGNFRQNLEETGMGYGLEVEMIDKAHKM-G-L-LTTPYA 635 (749)
Q Consensus 559 ~tPViaGv~atDP~~~~~~~l~~lk~~Gf~GV~NfPTvgliDG~fR~~LEe~G~gy~~EVemi~~A~~~-g-l-~T~~yv 635 (749)
+.|+++=+-+.| ..+.....+.+.+.|+.-|+= . ++ +. . -.++|+..++. + + ...+.+
T Consensus 3 ~~~~~~i~r~~~-~~~~~~~~~~l~~~G~~~vev-~--------~~-----~~-~---~~~~i~~l~~~~~~~~iGag~v 63 (190)
T cd00452 3 AQPLVAVLRGDD-AEDALALAEALIEGGIRAIEI-T--------LR-----TP-G---ALEAIRALRKEFPEALIGAGTV 63 (190)
T ss_pred cCcEEEEEEcCC-HHHHHHHHHHHHHCCCCEEEE-e--------CC-----Ch-h---HHHHHHHHHHHCCCCEEEEEeC
Confidence 345555444545 446667789999999987761 1 11 00 1 22255555554 2 2 345588
Q ss_pred cCHHHHHHHHhccCcEEEeccCCCcccccccccccCHHHHHHHHHHHHHHHHHhCCCeEEEEccCCCCCHHHHHHHHhhC
Q 004491 636 FNEGEAVKMAKAGADIIVAHMGLTTSGSIGAKTALSLDESVDRVQAIADAAHRINPDAIVLCHGGPISSPSEAEFILKRT 715 (749)
Q Consensus 636 f~~eqa~~Ma~AGaDiiv~h~GlT~gG~~Ga~~~~sl~~~~~~~~~i~~aa~~~~pdii~l~hGGPi~~p~d~~~~l~~~ 715 (749)
.+.++++...++|||.| |.+-+. .++.+++++.+..+++ | +.||++++..++.-
T Consensus 64 ~~~~~~~~a~~~Ga~~i--~~p~~~-------------------~~~~~~~~~~~~~~i~---g--v~t~~e~~~A~~~G 117 (190)
T cd00452 64 LTPEQADAAIAAGAQFI--VSPGLD-------------------PEVVKAANRAGIPLLP---G--VATPTEIMQALELG 117 (190)
T ss_pred CCHHHHHHHHHcCCCEE--EcCCCC-------------------HHHHHHHHHcCCcEEC---C--cCCHHHHHHHHHCC
Confidence 99999999999999998 433221 3566777777666554 2 34899998888665
Q ss_pred CCccEEecCc
Q 004491 716 KGVHGFYGAS 725 (749)
Q Consensus 716 ~~~~Gf~g~S 725 (749)
.+.-+|+-.+
T Consensus 118 ad~i~~~p~~ 127 (190)
T cd00452 118 ADIVKLFPAE 127 (190)
T ss_pred CCEEEEcCCc
Confidence 5666776543
No 265
>cd01573 modD_like ModD; Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase) present in some modABC operons in bacteria, which are involved in molybdate transport. In general, QPRTases are part of the de novo synthesis pathway of NAD in both prokaryotes and eukaryotes. They catalyse the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide.
Probab=82.00 E-value=8.7 Score=41.39 Aligned_cols=92 Identities=17% Similarity=0.195 Sum_probs=61.3
Q ss_pred chHHHHHHHHHHHHcC--CcccccccCHHHHHHHHhccCcEEEeccCCCcccccccccccCHHHHHHHHHHHHHHHHHhC
Q 004491 613 GYGLEVEMIDKAHKMG--LLTTPYAFNEGEAVKMAKAGADIIVAHMGLTTSGSIGAKTALSLDESVDRVQAIADAAHRIN 690 (749)
Q Consensus 613 gy~~EVemi~~A~~~g--l~T~~yvf~~eqa~~Ma~AGaDiiv~h~GlT~gG~~Ga~~~~sl~~~~~~~~~i~~aa~~~~ 690 (749)
|+..+-+.++.+|+.- ..---=|.|.+|+.+.+++|||+|-.-- .+.++ ++++.+..++..
T Consensus 166 g~~~~~~av~~~R~~~~~~~IgVev~t~eea~~A~~~gaD~I~ld~-------------~~p~~----l~~~~~~~~~~~ 228 (272)
T cd01573 166 GGPEPLKALARLRATAPEKKIVVEVDSLEEALAAAEAGADILQLDK-------------FSPEE----LAELVPKLRSLA 228 (272)
T ss_pred CCchHHHHHHHHHHhCCCCeEEEEcCCHHHHHHHHHcCCCEEEECC-------------CCHHH----HHHHHHHHhccC
Confidence 3433457788888752 1122347899999999999999887631 12222 234444445556
Q ss_pred CCeEEEEccCCCCCHHHHHHHHhhCCCccEEecCc
Q 004491 691 PDAIVLCHGGPISSPSEAEFILKRTKGVHGFYGAS 725 (749)
Q Consensus 691 pdii~l~hGGPi~~p~d~~~~l~~~~~~~Gf~g~S 725 (749)
|++.+.+-|| -+++.+..+.+ .+++++..++
T Consensus 229 ~~i~i~AsGG--I~~~ni~~~~~--~Gvd~I~vsa 259 (272)
T cd01573 229 PPVLLAAAGG--INIENAAAYAA--AGADILVTSA 259 (272)
T ss_pred CCceEEEECC--CCHHHHHHHHH--cCCcEEEECh
Confidence 7889999998 38999998874 5789995544
No 266
>TIGR03699 mena_SCO4550 menaquinone biosynthesis protein, SCO4550 family. members of this protein family are involved in menaquinone biosynthesis by an alternate pathway via futalosine.
Probab=81.95 E-value=51 Score=36.02 Aligned_cols=143 Identities=14% Similarity=0.186 Sum_probs=86.4
Q ss_pred ccCCCCCCHHHHHHHHHHcCccceecCCcccc--cchhhhhhhhhcCCchHHHHHHHHHHHHcCCccccc-c----cCHH
Q 004491 567 CGTDPFRRVDYFLKQLESIGFFGVQNFPTVGL--FDGNFRQNLEETGMGYGLEVEMIDKAHKMGLLTTPY-A----FNEG 639 (749)
Q Consensus 567 ~atDP~~~~~~~l~~lk~~Gf~GV~NfPTvgl--iDG~fR~~LEe~G~gy~~EVemi~~A~~~gl~T~~y-v----f~~e 639 (749)
|.+..+. .++.+++||+.|..-+. -.|. .+=.+|+.+--.+.+++.=++.|+.||+.|+-++++ . .+.+
T Consensus 135 ~~~~g~~-~~e~l~~Lk~aG~~~~~---~~g~E~~~~~~~~~~~~~~~s~~~~l~~i~~a~~~Gi~v~~~~iiGlgEt~e 210 (340)
T TIGR03699 135 AKKEGLS-LREVLERLKEAGLDSIP---GGGAEILSDRVRKIISPKKISSEEWLEVMETAHKLGLPTTATMMFGHVETLE 210 (340)
T ss_pred hccCCCC-HHHHHHHHHHcCCCcCC---CCcccccCHHHHHhhCCCCCCHHHHHHHHHHHHHcCCCccceeEeeCCCCHH
Confidence 3344443 48999999999887542 1111 233666666555678888899999999999987754 2 3445
Q ss_pred HHHHH----HhccCcE-----EEeccCCCcccccccccccCHHHHHHHHHHHHHHHHHhCCCeEEEEccCCCCCHHH-HH
Q 004491 640 EAVKM----AKAGADI-----IVAHMGLTTSGSIGAKTALSLDESVDRVQAIADAAHRINPDAIVLCHGGPISSPSE-AE 709 (749)
Q Consensus 640 qa~~M----a~AGaDi-----iv~h~GlT~gG~~Ga~~~~sl~~~~~~~~~i~~aa~~~~pdii~l~hGGPi~~p~d-~~ 709 (749)
|-..+ .+.+.+. ++++-=+..|.-++.....|.++.. ++...+|-+.|+ ++-+-||...--.+ .+
T Consensus 211 d~~~~l~~l~~l~~~~~~~~~fIP~~f~p~~tpl~~~~~~~~~e~l----~~iA~~Rl~lp~-~~~i~~~~~~~g~~~~~ 285 (340)
T TIGR03699 211 DRIEHLERIRELQDKTGGFTAFIPWTFQPGNTELGKKRPATSTEYL----KVLAISRIFLDN-IPNIQASWVTQGKEVGQ 285 (340)
T ss_pred HHHHHHHHHHHhchhhCCeeEEEeecccCCCCcccCCCCCCHHHHH----HHHHHHHHcCCC-CCcccCCccccChHHHH
Confidence 54333 4566653 3554333333334433456777755 445567888899 55455676555544 45
Q ss_pred HHHhhCCCccE
Q 004491 710 FILKRTKGVHG 720 (749)
Q Consensus 710 ~~l~~~~~~~G 720 (749)
..|. .++++
T Consensus 286 ~~l~--~Gan~ 294 (340)
T TIGR03699 286 LALH--FGAND 294 (340)
T ss_pred HHHh--cCCcc
Confidence 5563 34454
No 267
>cd04731 HisF The cyclase subunit of imidazoleglycerol phosphate synthase (HisF). Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and plants, or peformed by a heterodimer (HisH-glutaminase and HisF-cyclase), like in bacteria.
Probab=81.93 E-value=30 Score=35.86 Aligned_cols=159 Identities=18% Similarity=0.213 Sum_probs=90.9
Q ss_pred HHHHHHHHHhhcCCCeEE-eccccchhhhhhhhcCCcEEEEeccccccccCCccccccccccCchHHHHHhhhhhcCCCC
Q 004491 480 AILSKLKYQIDKGLPIIG-AGAGTGISAKFEEAGGVDLIVLYNSGRFRMAGRGSLAGLLPFADANAVVLEMANEVLPVVK 558 (749)
Q Consensus 480 ~il~~L~~~i~~~~piig-~gaGtGlsAk~ae~gGaDli~~ynsGrfR~~G~~SlagllpygdaN~iv~e~~~eilp~v~ 558 (749)
++++++++.+ +.||++ .|..+--.++.....|+|.++ .+++-++- =+++.++.+++ + +
T Consensus 61 ~~i~~i~~~~--~~pv~~~GGI~s~~d~~~~l~~G~~~v~-ig~~~~~~---------------p~~~~~i~~~~-~--~ 119 (243)
T cd04731 61 DVVERVAEEV--FIPLTVGGGIRSLEDARRLLRAGADKVS-INSAAVEN---------------PELIREIAKRF-G--S 119 (243)
T ss_pred HHHHHHHHhC--CCCEEEeCCCCCHHHHHHHHHcCCceEE-ECchhhhC---------------hHHHHHHHHHc-C--C
Confidence 5777777775 467665 667777677777778999874 56555431 13334443332 1 0
Q ss_pred CCceEEeecc---------------CCC-CCCHHHHHHHHHHcCccceec--CCcccccchhhhhhhhhcCCchHHH-HH
Q 004491 559 EVPVLAGVCG---------------TDP-FRRVDYFLKQLESIGFFGVQN--FPTVGLFDGNFRQNLEETGMGYGLE-VE 619 (749)
Q Consensus 559 ~tPViaGv~a---------------tDP-~~~~~~~l~~lk~~Gf~GV~N--fPTvgliDG~fR~~LEe~G~gy~~E-Ve 619 (749)
+. ++..+-. .+. ..+...+.+++.+.|+..|.= ..+.| +.-||..| ++
T Consensus 120 ~~-i~~~ld~k~~~~~~~~v~~~~~~~~~~~~~~~~~~~l~~~G~d~i~v~~i~~~g------------~~~g~~~~~i~ 186 (243)
T cd04731 120 QC-VVVSIDAKRRGDGGYEVYTHGGRKPTGLDAVEWAKEVEELGAGEILLTSMDRDG------------TKKGYDLELIR 186 (243)
T ss_pred CC-EEEEEEeeecCCCceEEEEcCCceecCCCHHHHHHHHHHCCCCEEEEeccCCCC------------CCCCCCHHHHH
Confidence 10 2222211 111 245678899999999987642 22222 12345443 24
Q ss_pred HHHHHHHcCCcccccccCHHHHHHHHhc-cCcEEEeccCCCcccccccccccCHHHHHHHH
Q 004491 620 MIDKAHKMGLLTTPYAFNEGEAVKMAKA-GADIIVAHMGLTTSGSIGAKTALSLDESVDRV 679 (749)
Q Consensus 620 mi~~A~~~gl~T~~yvf~~eqa~~Ma~A-GaDiiv~h~GlT~gG~~Ga~~~~sl~~~~~~~ 679 (749)
.++.+...-+....=+++.++++++.+. |+|-+++=-.+..|. .+++++.+..
T Consensus 187 ~i~~~~~~pvia~GGi~~~~di~~~l~~~g~dgv~vg~al~~~~-------~~~~~~~~~~ 240 (243)
T cd04731 187 AVSSAVNIPVIASGGAGKPEHFVEAFEEGGADAALAASIFHFGE-------YTIAELKEYL 240 (243)
T ss_pred HHHhhCCCCEEEeCCCCCHHHHHHHHHhCCCCEEEEeHHHHcCC-------CCHHHHHHHH
Confidence 4443333445555557899999999987 999888755555443 3455554443
No 268
>PF01207 Dus: Dihydrouridine synthase (Dus); InterPro: IPR001269 Members of this family catalyse the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archae. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. Dus 1 (P53759 from SWISSPROT) from Saccharomyces cerevisiae (Baker's yeast) acts on pre-tRNA-Phe, while Dus 2 (P53720 from SWISSPROT) acts on pre-tRNA-Tyr and pre-tRNA-Leu. Dus 1 is active as a single subunit, requiring NADPH or NADH, and is stimulated by the presence of FAD []. Some family members may be targeted to the mitochondria and even have a role in mitochondria []. ; GO: 0017150 tRNA dihydrouridine synthase activity, 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing, 0055114 oxidation-reduction process; PDB: 1VHN_A 3B0P_A 3B0V_D 3B0U_Y.
Probab=81.90 E-value=3 Score=45.36 Aligned_cols=173 Identities=21% Similarity=0.314 Sum_probs=93.4
Q ss_pred cccccCchHHHHHhh--hhhcCCCCC-CceEEeeccCCCCCCHHHHHHHHHHcCcccee-cC--Ccccccchhhhhhhhh
Q 004491 536 LLPFADANAVVLEMA--NEVLPVVKE-VPVLAGVCGTDPFRRVDYFLKQLESIGFFGVQ-NF--PTVGLFDGNFRQNLEE 609 (749)
Q Consensus 536 llpygdaN~iv~e~~--~eilp~v~~-tPViaGv~atDP~~~~~~~l~~lk~~Gf~GV~-Nf--PTvgliDG~fR~~LEe 609 (749)
+-|+-.+++++..-. .+.++...+ .|++.=++++|| -.+.+..+.+.+.||.||. |+ |.=-...+.+...|=+
T Consensus 27 ~temi~a~~~~~~~~~~~~~~~~~~~~~p~~~Ql~g~~~-~~~~~aa~~~~~~~~~~IDlN~GCP~~~v~~~g~Ga~Ll~ 105 (309)
T PF01207_consen 27 YTEMISAKAILRSNKKTIRLLPFLPNERPLIVQLFGNDP-EDLAEAAEIVAELGFDGIDLNMGCPAPKVTKGGAGAALLK 105 (309)
T ss_dssp E-S-EEHHHHHCT-HHHHHHS-GCC-T-TEEEEEE-S-H-HHHHHHHHHHCCTT-SEEEEEE---SHHHHHCT-GGGGGC
T ss_pred EcCCEEECcccccccceeecccccccccceeEEEeeccH-HHHHHHHHhhhccCCcEEeccCCCCHHHHhcCCcChhhhc
Confidence 456666777766543 345555554 599999999999 5677778888889999994 76 6544445555555533
Q ss_pred cCCchHHHHHHHHHHHHc-CC-cc----cccccC----HHHHHHHHhccCcEEEeccCCCcccccccccccCHHHHHHHH
Q 004491 610 TGMGYGLEVEMIDKAHKM-GL-LT----TPYAFN----EGEAVKMAKAGADIIVAHMGLTTSGSIGAKTALSLDESVDRV 679 (749)
Q Consensus 610 ~G~gy~~EVemi~~A~~~-gl-~T----~~yvf~----~eqa~~Ma~AGaDiiv~h~GlT~gG~~Ga~~~~sl~~~~~~~ 679 (749)
. .++=.++++..++. ++ +| +.+--+ .+=++.+.++|+|.|.+|.=...-..-| ....
T Consensus 106 ~---p~~~~~iv~~~~~~~~~pvsvKiR~g~~~~~~~~~~~~~~l~~~G~~~i~vH~Rt~~q~~~~---~a~w------- 172 (309)
T PF01207_consen 106 D---PDLLAEIVKAVRKAVPIPVSVKIRLGWDDSPEETIEFARILEDAGVSAITVHGRTRKQRYKG---PADW------- 172 (309)
T ss_dssp ----HHHHHHHHHHHHHH-SSEEEEEEESECT--CHHHHHHHHHHHHTT--EEEEECS-TTCCCTS------H-------
T ss_pred C---hHHhhHHHHhhhcccccceEEecccccccchhHHHHHHHHhhhcccceEEEecCchhhcCCc---ccch-------
Confidence 2 34455677777653 31 11 122222 3345556689999999997633333322 1122
Q ss_pred HHHHHHHHHhCCCeEEEEccCCCCCHHHHHHHHhhCCCccEEecCcc
Q 004491 680 QAIADAAHRINPDAIVLCHGGPISSPSEAEFILKRTKGVHGFYGASS 726 (749)
Q Consensus 680 ~~i~~aa~~~~pdii~l~hGGPi~~p~d~~~~l~~~~~~~Gf~g~Ss 726 (749)
+.|.+.....+ |-++.-|-|.+++|++.+++. ++++|..=|..
T Consensus 173 ~~i~~i~~~~~---ipvi~NGdI~s~~d~~~~~~~-tg~dgvMigRg 215 (309)
T PF01207_consen 173 EAIAEIKEALP---IPVIANGDIFSPEDAERMLEQ-TGADGVMIGRG 215 (309)
T ss_dssp HHHHHCHHC-T---SEEEEESS--SHHHHHHHCCC-H-SSEEEESHH
T ss_pred HHHHHHhhccc---ceeEEcCccCCHHHHHHHHHh-cCCcEEEEchh
Confidence 22333333333 445555679999999999977 68999876543
No 269
>PRK01130 N-acetylmannosamine-6-phosphate 2-epimerase; Provisional
Probab=81.88 E-value=4.2 Score=41.57 Aligned_cols=94 Identities=20% Similarity=0.141 Sum_probs=60.8
Q ss_pred HHHHHHHHHHHhhcCCCeEEeccccchhhhhhhhcCCcEEEEeccccccccCCccccccccccCchHHHHHhhhhhcCCC
Q 004491 478 TQAILSKLKYQIDKGLPIIGAGAGTGISAKFEEAGGVDLIVLYNSGRFRMAGRGSLAGLLPFADANAVVLEMANEVLPVV 557 (749)
Q Consensus 478 r~~il~~L~~~i~~~~piig~gaGtGlsAk~ae~gGaDli~~ynsGrfR~~G~~SlagllpygdaN~iv~e~~~eilp~v 557 (749)
-+++++++++. .+.|++ +...+---++.+++.|+|+|.+.+.|.-. ... ...+. -.+..+++...+
T Consensus 107 ~~~~i~~~~~~--~~i~vi-~~v~t~ee~~~a~~~G~d~i~~~~~g~t~---~~~--~~~~~------~~~~i~~i~~~~ 172 (221)
T PRK01130 107 LAELVKRIKEY--PGQLLM-ADCSTLEEGLAAQKLGFDFIGTTLSGYTE---ETK--KPEEP------DFALLKELLKAV 172 (221)
T ss_pred HHHHHHHHHhC--CCCeEE-EeCCCHHHHHHHHHcCCCEEEcCCceeec---CCC--CCCCc------CHHHHHHHHHhC
Confidence 45788888876 566665 45556566789999999998765544321 110 11111 134556666666
Q ss_pred CCCceEEeeccCCCCCCHHHHHHHHHHcCcccee
Q 004491 558 KEVPVLAGVCGTDPFRRVDYFLKQLESIGFFGVQ 591 (749)
Q Consensus 558 ~~tPViaGv~atDP~~~~~~~l~~lk~~Gf~GV~ 591 (749)
++||+++=.-++| +-++++.+.|..||.
T Consensus 173 -~iPvia~GGI~t~-----~~~~~~l~~GadgV~ 200 (221)
T PRK01130 173 -GCPVIAEGRINTP-----EQAKKALELGAHAVV 200 (221)
T ss_pred -CCCEEEECCCCCH-----HHHHHHHHCCCCEEE
Confidence 5999998776676 556677788988873
No 270
>PRK12677 xylose isomerase; Provisional
Probab=81.70 E-value=30 Score=39.15 Aligned_cols=167 Identities=21% Similarity=0.245 Sum_probs=91.5
Q ss_pred ccCCCC-------CCHHHHHHHHHHcCccceecC-Cccccc----------chhhhhhhhhcCCchHHHHHHHHH-----
Q 004491 567 CGTDPF-------RRVDYFLKQLESIGFFGVQNF-PTVGLF----------DGNFRQNLEETGMGYGLEVEMIDK----- 623 (749)
Q Consensus 567 ~atDP~-------~~~~~~l~~lk~~Gf~GV~Nf-PTvgli----------DG~fR~~LEe~G~gy~~EVemi~~----- 623 (749)
.+.||| .+..+.++++.++||.||.=. +.+--+ -..+|+.|+++|+... ++..
T Consensus 18 ~~~~~~g~~~~~~~~~~E~v~~~a~~Gf~gVElh~~~l~p~~~~~~~~~~~~~~lk~~l~~~GL~v~----~v~~n~f~~ 93 (384)
T PRK12677 18 QGRDPFGDATRPPLDPVEAVHKLAELGAYGVTFHDDDLVPFGATDAERDRIIKRFKKALDETGLVVP----MVTTNLFTH 93 (384)
T ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHhCCCEEEecccccCCCCCChhhhHHHHHHHHHHHHHcCCeeE----EEecCCCCC
Confidence 355666 378999999999999999432 111111 1245666666666422 1100
Q ss_pred -HHHcCCcccccccCH---HH-------H-HHHHhccCcEEEeccCCCccccccccc-ccCHHHHHHHHHHHHHHHHHhC
Q 004491 624 -AHKMGLLTTPYAFNE---GE-------A-VKMAKAGADIIVAHMGLTTSGSIGAKT-ALSLDESVDRVQAIADAAHRIN 690 (749)
Q Consensus 624 -A~~~gl~T~~yvf~~---eq-------a-~~Ma~AGaDiiv~h~GlT~gG~~Ga~~-~~sl~~~~~~~~~i~~aa~~~~ 690 (749)
.-+.|=||-+ ++ ++ + +...+.||+.+++|.|.-....-+.++ ....+..++-++++.+.|.+.+
T Consensus 94 p~~~~g~lts~---d~~~R~~Ai~~~~r~IdlA~eLGa~~Vvv~~G~~g~~~~~~~d~~~a~~~~~eaL~~l~~~A~~~G 170 (384)
T PRK12677 94 PVFKDGAFTSN---DRDVRRYALRKVLRNIDLAAELGAKTYVMWGGREGAEYDAAKDVRAALDRYREAIDLLAAYVKDQG 170 (384)
T ss_pred ccccCCcCCCC---CHHHHHHHHHHHHHHHHHHHHhCCCEEEEeeCCCCccCcccCCHHHHHHHHHHHHHHHHHHHHhcC
Confidence 0000111111 11 11 1 233588999999998843111111111 2234445556668888888777
Q ss_pred CCeEEEEccC--------CCCCHHHHHHHHhhCC--CccEE---ecCcccccchHHHHHHHHH
Q 004491 691 PDAIVLCHGG--------PISSPSEAEFILKRTK--GVHGF---YGASSMERLPVEQAITSTM 740 (749)
Q Consensus 691 pdii~l~hGG--------Pi~~p~d~~~~l~~~~--~~~Gf---~g~Ss~ERlP~E~ai~~~~ 740 (749)
.+|-+++-== -+.+++++..+++.+. ...|. +|..-|.....+.+|....
T Consensus 171 ~gV~laIEpkp~ep~~~~~l~t~~~al~li~~lg~~~~vGv~lD~gH~~m~g~n~~~~i~~~l 233 (384)
T PRK12677 171 YDLRFALEPKPNEPRGDILLPTVGHALAFIATLEHPEMVGLNPEVGHEQMAGLNFTHGIAQAL 233 (384)
T ss_pred CCcEEEEccCCCCCCCCeeeCCHHHHHHHHHHhCCCccEEEeeechHHHhcCCCHHHHHHHHH
Confidence 7776665422 3468999999998753 22342 3445565556666666554
No 271
>TIGR03551 F420_cofH 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, CofH subunit. This enzyme, together with CofG, complete the biosynthesis of 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, the chromophore of coenzyme F420. The chromophore is also used in cyanobacteria DNA photolyases.
Probab=81.27 E-value=92 Score=34.33 Aligned_cols=173 Identities=18% Similarity=0.179 Sum_probs=101.2
Q ss_pred hHHHHHhhhhhcCCCCCCceEEe----e--ccCCCCCCHHHHHHHHHHcCccceecCCcccccchhhhhhhhhcCCchHH
Q 004491 543 NAVVLEMANEVLPVVKEVPVLAG----V--CGTDPFRRVDYFLKQLESIGFFGVQNFPTVGLFDGNFRQNLEETGMGYGL 616 (749)
Q Consensus 543 N~iv~e~~~eilp~v~~tPViaG----v--~atDP~~~~~~~l~~lk~~Gf~GV~NfPTvgliDG~fR~~LEe~G~gy~~ 616 (749)
.+.+.++.++|--...++.+.+- + ..+..=...++.+++||++|...+.. -..-..+-..|+.+--....|+.
T Consensus 102 ~~~~~~i~~~Ik~~~~~i~~~~~t~~ei~~~~~~~g~~~~e~l~~LkeAGl~~i~~-~~~E~~~~~v~~~i~~~~~~~~~ 180 (343)
T TIGR03551 102 GDFYLDILRAVKEEVPGMHIHAFSPMEVYYGARNSGLSVEEALKRLKEAGLDSMPG-TAAEILDDEVRKVICPDKLSTAE 180 (343)
T ss_pred HHHHHHHHHHHHHHCCCceEEecCHHHHHHHHHHcCCCHHHHHHHHHHhCcccccC-cchhhcCHHHHHhcCCCCCCHHH
Confidence 35667777655433333343321 0 11233344689999999998776631 01123455666777666678988
Q ss_pred HHHHHHHHHHcCCccccc-----ccCHHHHHHH----HhccCc-----EEEe----ccCCCccccccc-ccccCHHHHHH
Q 004491 617 EVEMIDKAHKMGLLTTPY-----AFNEGEAVKM----AKAGAD-----IIVA----HMGLTTSGSIGA-KTALSLDESVD 677 (749)
Q Consensus 617 EVemi~~A~~~gl~T~~y-----vf~~eqa~~M----a~AGaD-----iiv~----h~GlT~gG~~Ga-~~~~sl~~~~~ 677 (749)
=++.|+.||+.|+-++.. .-+.||-..+ .+...| ..++ |-|-..... |. ...+|.++++
T Consensus 181 ~~~~i~~a~~~Gi~v~s~~i~G~~Et~ed~~~~l~~lr~l~~~~~~~~~~iP~~f~~~gT~l~~~-~~~~~~~~~~~~l- 258 (343)
T TIGR03551 181 WIEIIKTAHKLGIPTTATIMYGHVETPEHWVDHLLILREIQEETGGFTEFVPLPFVHYNAPLYLK-GMARPGPTGREDL- 258 (343)
T ss_pred HHHHHHHHHHcCCcccceEEEecCCCHHHHHHHHHHHHHhhHHhCCeeEEEeccccCCCCccccc-cCCCCCCCHHHHH-
Confidence 899999999999987654 3455555444 356665 2343 333222111 11 1335777776
Q ss_pred HHHHHHHHHHHhCCCeEEEEccCCCCCHHH-HHHHHhhCCCccEEec
Q 004491 678 RVQAIADAAHRINPDAIVLCHGGPISSPSE-AEFILKRTKGVHGFYG 723 (749)
Q Consensus 678 ~~~~i~~aa~~~~pdii~l~hGGPi~~p~d-~~~~l~~~~~~~Gf~g 723 (749)
++...+|=+.|+.++-+-+|+..--.+ .+..| + .++++|-|
T Consensus 259 ---r~iAv~Rl~lp~~~~~i~a~~~~l~~~~~~~~l-~-~Gan~~~g 300 (343)
T TIGR03551 259 ---KVHAIARILLHGLIDNIQASWVKLGKKLAQVAL-R-CGANDLGG 300 (343)
T ss_pred ---HHHHHHHHhCCCcccCeeccccccCHHHHHHHH-h-CCCccCCc
Confidence 455567778999876666776443334 45555 3 46677765
No 272
>TIGR00259 thylakoid_BtpA membrane complex biogenesis protein, BtpA family. Members of this family are found in C. elegans, Synechocystis sp., E. coli, and several of the Archaea. Members in Cyanobacteria have been shown to play a role in protein complex biogenesis, and designated BtpA (biogenesis of thylakoid protein). Homologs in non-photosynthetic species, where thylakoid intracytoplasmic membranes are lacking, are likely to act elsewhere in membrane protein biogenesis.
Probab=81.17 E-value=7.8 Score=41.74 Aligned_cols=194 Identities=22% Similarity=0.270 Sum_probs=112.7
Q ss_pred cHHHHHHHHHHHhhcCCCeEEeccccchhhhhhhhcCCcEEEEeccccccccCCccccccccc--cCchHHHHHhh---h
Q 004491 477 RTQAILSKLKYQIDKGLPIIGAGAGTGISAKFEEAGGVDLIVLYNSGRFRMAGRGSLAGLLPF--ADANAVVLEMA---N 551 (749)
Q Consensus 477 ~r~~il~~L~~~i~~~~piig~gaGtGlsAk~ae~gGaDli~~ynsGrfR~~G~~Slagllpy--gdaN~iv~e~~---~ 551 (749)
+-++|+++-.+- |+.-++||+|=|++=|-|- +|| .-.=+.+--|+ +
T Consensus 22 ~~~~i~e~A~~e-----------------a~~l~~~GvD~viveN~~d------------~P~~~~~~p~tva~m~~i~~ 72 (257)
T TIGR00259 22 NLNAVIDKAWKD-----------------AMALEEGGVDAVMFENFFD------------APFLKEVDPETVAAMAVIAG 72 (257)
T ss_pred CHHHHHHHHHHH-----------------HHHHHhCCCCEEEEecCCC------------CCCcCCCCHHHHHHHHHHHH
Confidence 467788777664 6778999999999966443 344 33345666666 4
Q ss_pred hhcCCCCCCceEEee--ccCCCCCCHHHHH----HHHHHcCccceecCCcccccchhhhhhhhhcCCchHHH----HHHH
Q 004491 552 EVLPVVKEVPVLAGV--CGTDPFRRVDYFL----KQLESIGFFGVQNFPTVGLFDGNFRQNLEETGMGYGLE----VEMI 621 (749)
Q Consensus 552 eilp~v~~tPViaGv--~atDP~~~~~~~l----~~lk~~Gf~GV~NfPTvgliDG~fR~~LEe~G~gy~~E----Vemi 621 (749)
||-..+. +| .|| ...||.-.+.-=. +=++.-.|.|.- .=--|+|+|+..+.|+ |.++ |.++
T Consensus 73 ~v~~~~~-~p--~GvnvL~nd~~aal~iA~a~ga~FIRv~~~~g~~-~~d~G~~~~~a~e~~r-----~r~~l~~~v~i~ 143 (257)
T TIGR00259 73 QLKSDVS-IP--LGINVLRNDAVAALAIAMAVGAKFIRVNVLTGVY-ASDQGIIEGNAGELIR-----YKKLLGSEVKIL 143 (257)
T ss_pred HHHHhcC-CC--eeeeeecCCCHHHHHHHHHhCCCEEEEccEeeeE-ecccccccccHHHHHH-----HHHHcCCCcEEE
Confidence 5666653 56 675 4568875543210 112223666665 3446888888776664 3332 2222
Q ss_pred HHHHHcCCcccccccCH-HHHHHHHhcc-CcEEEeccCCCcccccccccccCHHHHHHHHHHHHHHHHHhCCCeEEEEcc
Q 004491 622 DKAHKMGLLTTPYAFNE-GEAVKMAKAG-ADIIVAHMGLTTSGSIGAKTALSLDESVDRVQAIADAAHRINPDAIVLCHG 699 (749)
Q Consensus 622 ~~A~~~gl~T~~yvf~~-eqa~~Ma~AG-aDiiv~h~GlT~gG~~Ga~~~~sl~~~~~~~~~i~~aa~~~~pdii~l~hG 699 (749)
.--+.+-=.-++- .+. |.|+....-| +|-||+- |.+|| .. .+.++.. ..++..++.-+|+-|
T Consensus 144 adV~~kh~~~l~~-~~~~e~a~~~~~~~~aDavivt-G~~TG----~~--~d~~~l~--------~vr~~~~~~Pvllgg 207 (257)
T TIGR00259 144 ADIVVKHAVHLGN-RDLESIALDTVERGLADAVILS-GKTTG----TE--VDLELLK--------LAKETVKDTPVLAGS 207 (257)
T ss_pred eceeecccCcCCC-CCHHHHHHHHHHhcCCCEEEEC-cCCCC----CC--CCHHHHH--------HHHhccCCCeEEEEC
Confidence 1111111111221 233 5566666555 9999973 33322 22 2332221 233334555677777
Q ss_pred CCCCCHHHHHHHHhhCCCccEEecCccccc
Q 004491 700 GPISSPSEAEFILKRTKGVHGFYGASSMER 729 (749)
Q Consensus 700 GPi~~p~d~~~~l~~~~~~~Gf~g~Ss~ER 729 (749)
| -+|+.+...++. ++|++-+|++|+
T Consensus 208 G--vt~eNv~e~l~~---adGviVgS~~K~ 232 (257)
T TIGR00259 208 G--VNLENVEELLSI---ADGVIVATTIKK 232 (257)
T ss_pred C--CCHHHHHHHHhh---CCEEEECCCccc
Confidence 7 799999999976 799999999994
No 273
>PLN02389 biotin synthase
Probab=81.15 E-value=88 Score=35.48 Aligned_cols=161 Identities=17% Similarity=0.244 Sum_probs=96.3
Q ss_pred HHHHHhhhhhcCCCCCCceEEeeccCCCCCCHHHHHHHHHHcCccceecCCcccccch---hhhhhhhhcCCchHHHHHH
Q 004491 544 AVVLEMANEVLPVVKEVPVLAGVCGTDPFRRVDYFLKQLESIGFFGVQNFPTVGLFDG---NFRQNLEETGMGYGLEVEM 620 (749)
Q Consensus 544 ~iv~e~~~eilp~v~~tPViaGv~atDP~~~~~~~l~~lk~~Gf~GV~NfPTvgliDG---~fR~~LEe~G~gy~~EVem 620 (749)
+.+.++.++|- .+++ -+|.+-=+ .-.+-+++||+.|...++. -+|. .|++.. ++-.|+.=++.
T Consensus 153 e~i~eiir~ik----~~~l--~i~~s~G~-l~~E~l~~LkeAGld~~~~-----~LeTs~~~y~~i~--~~~s~e~rl~t 218 (379)
T PLN02389 153 NQILEYVKEIR----GMGM--EVCCTLGM-LEKEQAAQLKEAGLTAYNH-----NLDTSREYYPNVI--TTRSYDDRLET 218 (379)
T ss_pred HHHHHHHHHHh----cCCc--EEEECCCC-CCHHHHHHHHHcCCCEEEe-----eecCChHHhCCcC--CCCCHHHHHHH
Confidence 56666666653 2221 12333322 4568899999999998864 2343 444433 35699999999
Q ss_pred HHHHHHcCCcccc-----cccCHHHHHHHH----hc--cCcEEEeccCCCccc-ccccccccCHHHHHHHHHHHHHHHHH
Q 004491 621 IDKAHKMGLLTTP-----YAFNEGEAVKMA----KA--GADIIVAHMGLTTSG-SIGAKTALSLDESVDRVQAIADAAHR 688 (749)
Q Consensus 621 i~~A~~~gl~T~~-----yvf~~eqa~~Ma----~A--GaDiiv~h~GlT~gG-~~Ga~~~~sl~~~~~~~~~i~~aa~~ 688 (749)
|+.||+.|+-++. ..-+.+|...|+ +- ..|.+-+|.=.-..| -+......|.+++.+. ...+|=
T Consensus 219 i~~a~~~Gi~v~sg~IiGlgEt~edrv~~l~~Lr~L~~~~~~v~l~~l~P~~GTpL~~~~~~s~~e~lr~----iAi~Rl 294 (379)
T PLN02389 219 LEAVREAGISVCSGGIIGLGEAEEDRVGLLHTLATLPEHPESVPINALVAVKGTPLEDQKPVEIWEMVRM----IATARI 294 (379)
T ss_pred HHHHHHcCCeEeEEEEECCCCCHHHHHHHHHHHHhcccCCcEEecccceecCCCcCCCCCCCCHHHHHHH----HHHHHH
Confidence 9999999987744 344556644443 22 456444433212222 2444456788888754 445677
Q ss_pred hCCCeEEEEccCCCC-CHHHHHHHHhhCCCccEEecC
Q 004491 689 INPDAIVLCHGGPIS-SPSEAEFILKRTKGVHGFYGA 724 (749)
Q Consensus 689 ~~pdii~l~hGGPi~-~p~d~~~~l~~~~~~~Gf~g~ 724 (749)
+.||.++-+-||-+. .++..+..|. .++++.+-|
T Consensus 295 ~lP~~~i~i~~gr~~l~~~~~~~~l~--~GAN~~~~g 329 (379)
T PLN02389 295 VMPKAMVRLSAGRVRFSMAEQALCFL--AGANSIFTG 329 (379)
T ss_pred HCCCccccccccccccChhHHHHHHH--hCCCEEEEC
Confidence 899988877788654 4443455553 455665443
No 274
>PRK09197 fructose-bisphosphate aldolase; Provisional
Probab=80.62 E-value=12 Score=42.07 Aligned_cols=211 Identities=14% Similarity=0.149 Sum_probs=123.7
Q ss_pred cHHHHHHHHHHHhhcCCCeEEeccccchhh----hhhhhcCCcEEEEeccccccccCCccccccccccC-----------
Q 004491 477 RTQAILSKLKYQIDKGLPIIGAGAGTGISA----KFEEAGGVDLIVLYNSGRFRMAGRGSLAGLLPFAD----------- 541 (749)
Q Consensus 477 ~r~~il~~L~~~i~~~~piig~gaGtGlsA----k~ae~gGaDli~~ynsGrfR~~G~~Slagllpygd----------- 541 (749)
+-++..+-|+..-++|-.|...=+-.=-++ +.||+...++||-.+.|..+..|-.. +.+
T Consensus 5 ~~~~~k~~L~~A~~~~yAV~AfNv~n~e~~~avi~AAee~~sPVIlq~s~~~~~~~~g~~------~~~~~~~~~~~~~~ 78 (350)
T PRK09197 5 TGEDYQEMFDRAKENGFALPAVNVVGTDSINAVLEGAAEAKSPVIIQFSNGGAAFIAGKG------VKDDGQGAAVLGAI 78 (350)
T ss_pred cHHHHHHHHHHHHHCCceEEEEEeCCHHHHHHHHHHHHHHCCCEEEEcChhhHhhcCCcc------ccccchhhhhhhHH
Confidence 344555555554444554444433333333 57899999999988777665322111 222
Q ss_pred -chHHHHHhhhhhcCCCCCCceEEee-ccCCCCCCHHHHHHHHHHcCccceec-----CCcccccchh---hhhhhhhcC
Q 004491 542 -ANAVVLEMANEVLPVVKEVPVLAGV-CGTDPFRRVDYFLKQLESIGFFGVQN-----FPTVGLFDGN---FRQNLEETG 611 (749)
Q Consensus 542 -aN~iv~e~~~eilp~v~~tPViaGv-~atDP~~~~~~~l~~lk~~Gf~GV~N-----fPTvgliDG~---fR~~LEe~G 611 (749)
.=.++.+++++. .+||.-=+ .++|+. + .++++..+.||.-|.. |.+| +|||+ |.+|++.|
T Consensus 79 ~~~~~v~~~A~~~-----~VPValHLDHg~~~~--~-~~i~~ai~~g~~~v~~a~~~gftSV-MiDgS~lpfEeNI~~T- 148 (350)
T PRK09197 79 AGAKHVHEVAEHY-----GVPVILHTDHCAKKL--L-PWIDGLLDAGEKHFAAGGKPLFSSH-MIDLSEEPLEENIEIC- 148 (350)
T ss_pred HHHHHHHHHHHHC-----CCCEEEECCCCCCcc--h-HHHHHHHHhhHHHHHhcCCCCceeE-EeeCCCCCHHHHHHHH-
Confidence 235666677653 46865332 233331 2 2677777777332222 2233 89985 55555533
Q ss_pred CchHHHHHHHHHHHHcCCcc------------------c---ccccCHHHHHHHHhc-cC----cEEEeccCCCcccccc
Q 004491 612 MGYGLEVEMIDKAHKMGLLT------------------T---PYAFNEGEAVKMAKA-GA----DIIVAHMGLTTSGSIG 665 (749)
Q Consensus 612 ~gy~~EVemi~~A~~~gl~T------------------~---~yvf~~eqa~~Ma~A-Ga----Diiv~h~GlT~gG~~G 665 (749)
+| ..+.||.+|+.. . .+..++|||+.+.+. |+ |.|-+-+|-..|--.+
T Consensus 149 ----ke--vVe~Ah~~GvsVEaELG~Igg~Ed~~~~~~~~~~~~~TdPeeA~~Fv~~Tgv~~~~D~LAvaiGt~HG~Yk~ 222 (350)
T PRK09197 149 ----SK--YLERMAKAGMTLEIELGVTGGEEDGVDNSHEDNSKLYTQPEDVLYAYEALGKISGRFTIAASFGNVHGVYKP 222 (350)
T ss_pred ----HH--HHHHHHHcCCEEEEEEeccCCCcCCccccccccccccCCHHHHHHHHHHhCCCCcceEEeeecccccCCcCC
Confidence 22 456666665421 0 234689999999854 87 9999999987777652
Q ss_pred cccccCHHHHHHHHHHHHHHHHHh----CCCeEEEEccCCCCCHHHHHHHHh
Q 004491 666 AKTALSLDESVDRVQAIADAAHRI----NPDAIVLCHGGPISSPSEAEFILK 713 (749)
Q Consensus 666 a~~~~sl~~~~~~~~~i~~aa~~~----~pdii~l~hGGPi~~p~d~~~~l~ 713 (749)
.+..+.+ +++++|.++..+. .+++-+..|||-=...++++...+
T Consensus 223 ~~p~Ld~----e~L~~I~~~v~~~~~~~~~~vPLVLHGgSGipde~i~~ai~ 270 (350)
T PRK09197 223 GNVKLRP----EILKDSQEYVSKKFGLPAKPFDFVFHGGSGSTLEEIREAVS 270 (350)
T ss_pred CCCccCH----HHHHHHHHHHHHhhCCCCCCCCEEEeCCCCCCHHHHHHHHH
Confidence 2333444 4677777766433 347777789997667788876654
No 275
>cd08607 GDPD_GDE5 Glycerophosphodiester phosphodiesterase domain of putative mammalian glycerophosphodiester phosphodiesterase GDE5 and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in putative mammalian GDE5 and similar proteins. Mammalian GDE5 is widely expressed in mammalian tissues, with highest expression in the spinal chord. Although its biological function remains unclear, mammalian GDE5 shows higher sequence homology to fungal and plant glycerophosphodiester phosphodiesterases (GP-GDEs, EC 3.1.4.46) than to other bacterial and mammalian GP-GDEs. It may also hydrolyze glycerophosphodiesters to sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. In addition to C-terminal GDPD domain, all members in this subfamily have a starch binding domain (CBM20) in the N-terminus, which suggests these proteins may play a distinct role in glycerol metabolism.
Probab=80.30 E-value=6.7 Score=41.66 Aligned_cols=36 Identities=22% Similarity=0.318 Sum_probs=33.0
Q ss_pred HHHHHHHHcCCccccccc--C-HHHHHHHHhccCcEEEe
Q 004491 619 EMIDKAHKMGLLTTPYAF--N-EGEAVKMAKAGADIIVA 654 (749)
Q Consensus 619 emi~~A~~~gl~T~~yvf--~-~eqa~~Ma~AGaDiiv~ 654 (749)
++++.||++|+...+|.. | +++++++.+.|+|-|+.
T Consensus 249 ~~v~~~~~~Gl~v~~wTv~~n~~~~~~~l~~~GVdgIiT 287 (290)
T cd08607 249 SQIELAKSLGLVVFCWGDDLNDPENRKKLKELGVDGLIY 287 (290)
T ss_pred HHHHHHHHcCCEEEEECCCCCCHHHHHHHHHcCCCEEEe
Confidence 789999999999999988 5 78999999999999985
No 276
>PRK07428 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=80.18 E-value=6.1 Score=43.11 Aligned_cols=201 Identities=16% Similarity=0.127 Sum_probs=111.3
Q ss_pred EeccccchhhhhhhhcCCcEE--EEeccccccccCCccccccccccCchHHHHH----------------hhhhhcCCCC
Q 004491 497 GAGAGTGISAKFEEAGGVDLI--VLYNSGRFRMAGRGSLAGLLPFADANAVVLE----------------MANEVLPVVK 558 (749)
Q Consensus 497 g~gaGtGlsAk~ae~gGaDli--~~ynsGrfR~~G~~SlagllpygdaN~iv~e----------------~~~eilp~v~ 558 (749)
|+-+|.....+..++-|.++- ..+.+|-+=..|---+ --.|++..+.+- ..++..-.++
T Consensus 53 gv~~G~~~a~~i~~~~~~~~~~~~~~~dG~~v~~g~~i~---~~~G~a~~ll~~eR~~lN~l~~~SGIAT~T~~~v~~~~ 129 (288)
T PRK07428 53 GVIAGLPIAARVFQLLDPQVSFTPLVAEGAACESGQVVA---EIEGPLDALLMGERVALNLAMRLSGIATLTRQYVEKIA 129 (288)
T ss_pred eEEECHHHHHHHHHHcCCcEEEEEEcCCCCEecCCCEEE---EEEEcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 445677888888888886554 5567777655553211 124666655421 0233333334
Q ss_pred CCc-eEEeeccCCCCCCHHHHHHHHHHcCccceec-CCcccccchhhhhhhhhcCCchHHHHHHHHHHHHcCCccccccc
Q 004491 559 EVP-VLAGVCGTDPFRRVDYFLKQLESIGFFGVQN-FPTVGLFDGNFRQNLEETGMGYGLEVEMIDKAHKMGLLTTPYAF 636 (749)
Q Consensus 559 ~tP-ViaGv~atDP~~~~~~~l~~lk~~Gf~GV~N-fPTvgliDG~fR~~LEe~G~gy~~EVemi~~A~~~gl~T~~yvf 636 (749)
++. .|++--=|=|....-.--.=+.-=|+.=-.| +.+|-+.|-+++. .| |+.+-|+-+|+.......---=|.
T Consensus 130 ~~~~~i~~TRKt~Pg~R~l~k~AV~~GGg~~HR~gL~d~ilikdNHi~~----~g-~i~~av~~~r~~~~~~~~I~VEv~ 204 (288)
T PRK07428 130 DLPTQLVDTRKTTPGLRLLEKYATQVGGAINHRMGLDDAVMIKDNHIQA----AG-GIGEAITRIRQRIPYPLTIEVETE 204 (288)
T ss_pred CCCeEEEecCCCCCcchHHHHHHHHhcCcccccCCchheeeecHHHHHH----hC-CHHHHHHHHHHhCCCCCEEEEECC
Confidence 433 3443333445433322222222223322222 2466666655432 23 255555544443221222223367
Q ss_pred CHHHHHHHHhccCcEEEeccCCCcccccccccccCHHHHHHHHHHHHHHHHHhCCCeEEEEccCCCCCHHHHHHHHhhCC
Q 004491 637 NEGEAVKMAKAGADIIVAHMGLTTSGSIGAKTALSLDESVDRVQAIADAAHRINPDAIVLCHGGPISSPSEAEFILKRTK 716 (749)
Q Consensus 637 ~~eqa~~Ma~AGaDiiv~h~GlT~gG~~Ga~~~~sl~~~~~~~~~i~~aa~~~~pdii~l~hGGPi~~p~d~~~~l~~~~ 716 (749)
|.|||.+.+++|||+|..- ..++++.. ++.+..++.+|++.+.+-|| -+++.+..+. . +
T Consensus 205 tleea~eA~~~GaD~I~LD-------------n~~~e~l~----~av~~~~~~~~~i~leAsGG--It~~ni~~ya-~-t 263 (288)
T PRK07428 205 TLEQVQEALEYGADIIMLD-------------NMPVDLMQ----QAVQLIRQQNPRVKIEASGN--ITLETIRAVA-E-T 263 (288)
T ss_pred CHHHHHHHHHcCCCEEEEC-------------CCCHHHHH----HHHHHHHhcCCCeEEEEECC--CCHHHHHHHH-H-c
Confidence 8999999999999999765 34444333 33333455688999999998 4799998876 4 6
Q ss_pred CccEEecCcc
Q 004491 717 GVHGFYGASS 726 (749)
Q Consensus 717 ~~~Gf~g~Ss 726 (749)
++|+..-+|.
T Consensus 264 GvD~Isvgsl 273 (288)
T PRK07428 264 GVDYISSSAP 273 (288)
T ss_pred CCCEEEEchh
Confidence 7888766653
No 277
>PF02514 CobN-Mg_chel: CobN/Magnesium Chelatase; InterPro: IPR003672 This family contains a domain common to the cobN protein and to magnesium protoporphyrin chelatase. CobN may play a role in cobalt insertion reactions and is implicated in the conversion of precorrin-2 to cobyrinic acid in cobalamin biosynthesis []. Magnesium protoporphyrin chelatase is involved in chlorophyll biosynthesis as the third subunit of light-independent protochlorophyllide reductase in bacteria and plants [].; GO: 0009058 biosynthetic process
Probab=80.17 E-value=8.1 Score=49.20 Aligned_cols=145 Identities=15% Similarity=0.223 Sum_probs=96.8
Q ss_pred CCCcEEEEeccCC-----chHHHHHHHHHHHhcCccEEEEecCC--CchHHHHHHHHc---CCceEEEeCchhhhhhhhh
Q 004491 207 KEKCTVGITMFGV-----TTPCVNAVKERLEKEGYETMVFHATG--VGGRAMEALVKE---GFIQGVLDITTTEVADYVV 276 (749)
Q Consensus 207 ~~kp~IgiTMFGv-----TTp~V~~~r~~Le~~GyEvlVFHATG--~GGrAME~Li~e---G~~~gVlDlTttElaD~l~ 276 (749)
.++|+|||..+.. .|..++++.+.||++|+.|+.+.+.| .+-.++|++... -.+|+|+.+|.-=+
T Consensus 69 ~~~P~VgIlfyrs~~~~g~~~~vdaLI~~LE~~G~nvipvf~~~~~~~~~~i~~~f~~~g~~~vDaIIn~~~f~l----- 143 (1098)
T PF02514_consen 69 PNRPTVGILFYRSYWLSGNTAVVDALIRALEERGLNVIPVFCSSGPDSQEAIEDYFMDDGKPRVDAIINLTGFSL----- 143 (1098)
T ss_pred CCCCEEEEEeehhhhhcCCcHHHHHHHHHHHHCCCeEEEEEecCccchHHHHHHHHhhcCCCCceEEEEcCcccc-----
Confidence 5799999987632 34779999999999999999999887 466779999887 88999999886211
Q ss_pred CCccCCCCchhhhhhhcCCCeEEec--------------CccccccC----------CCCCCCCccccCCceeeecC---
Q 004491 277 GGVMACDSSRFDATIEKKIPLVLSV--------------GALDMVNF----------GAKDTIPSKFQRRKIHVHNQ--- 329 (749)
Q Consensus 277 GGv~saGp~RL~AA~~~GIPqVVsp--------------GalDmVnF----------G~~dtvPe~f~~R~~~~HNp--- 329 (749)
........-+.--+.|||.+-.. =+|+-... |..+++|--++.+ ++
T Consensus 144 --~~~~~~~~~~~L~~LnVPVlq~i~~~~~t~eeW~~S~~GL~~~e~~~~ValPE~DG~I~pivia~~~~-----d~~~g 216 (1098)
T PF02514_consen 144 --GGGPAGGAIELLKELNVPVLQAITLYYQTREEWEESPQGLSPMEVAMQVALPEFDGAIEPIVIAGKEP-----DPETG 216 (1098)
T ss_pred --CCCCcchhHHHHHHCCCCEEEeeccCCCCHHHHHhCCCCCCHHHHHHHhhhhhhccccceEEEEEeec-----CcccC
Confidence 11111114444556889987543 33441111 3334444444444 32
Q ss_pred -cceEEecCHHHHHHHHHHHHHHHc-----cCCCCeEEEe
Q 004491 330 -QVSLMRTTVDENKKFAAFIANKLN-----QSSSKIRLCL 363 (749)
Q Consensus 330 -~vTlmRTt~eE~~~ig~~iA~kLn-----~a~gpv~vll 363 (749)
.+...+.-+|-.+++++.+..-++ .+..+|++++
T Consensus 217 ~~~~~~~PIperI~~la~ra~~W~~LR~kpN~eKKVAII~ 256 (1098)
T PF02514_consen 217 FEVREYVPIPERIERLADRAKRWARLRRKPNAEKKVAIIY 256 (1098)
T ss_pred ccceeEEECHHHHHHHHHHHHHHHHHhcccccccEEEEEE
Confidence 334577788888888888776554 4456788876
No 278
>cd06306 PBP1_TorT-like TorT-like proteins, a periplasmic binding protein family that activates induction of the Tor respiratory system upon trimethylamine N-oxide (TMAO) electron-acceptor binding in bacteria. TorT-like proteins, a periplasmic binding protein family that activates induction of the Tor respiratory system upon trimethylamine N-oxide (TMAO) electron-acceptor binding in bacteria. The Tor respiratory system is consists of three proteins (TorC, TorA, and TorD) and is induced in the presence of TMAO. The TMAO control is tightly regulated by three proteins: TorS, TorT, and TorR. Thus, the disruption of any of these proteins can abolish the Tor respiratory induction. TorT shares homology with the sugar-binding domain of the type I periplasmic binding proteins. The members of TorT-like family bind TMAO or related compounds and are predicted to be involved in signal transduction and/or substrate transport.
Probab=80.02 E-value=75 Score=32.52 Aligned_cols=65 Identities=12% Similarity=0.088 Sum_probs=41.2
Q ss_pred HHHHHHHHHhcCccEEEEecCCCch-----HHHHHHHHcCCceEEEeCchhhhhhhhhCCccCCCCchhhhhhhcCCCeE
Q 004491 224 VNAVKERLEKEGYETMVFHATGVGG-----RAMEALVKEGFIQGVLDITTTEVADYVVGGVMACDSSRFDATIEKKIPLV 298 (749)
Q Consensus 224 V~~~r~~Le~~GyEvlVFHATG~GG-----rAME~Li~eG~~~gVlDlTttElaD~l~GGv~saGp~RL~AA~~~GIPqV 298 (749)
...+.+.++++||+++++++++... ..+|.|+.. .+||++=.++ . ....+.+..+.++|||.|
T Consensus 18 ~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~i~~~~~~-~vdgiI~~~~-~----------~~~~~~~~~~~~~giPvV 85 (268)
T cd06306 18 NYGMVEEAKRLGVSLKLLEAGGYPNLAKQIAQLEDCAAW-GADAILLGAV-S----------PDGLNEILQQVAASIPVI 85 (268)
T ss_pred HHHHHHHHHHcCCEEEEecCCCCCCHHHHHHHHHHHHHc-CCCEEEEcCC-C----------hhhHHHHHHHHHCCCCEE
Confidence 4456677778899999997765443 356666654 6999972211 1 000112566678999999
Q ss_pred Ee
Q 004491 299 LS 300 (749)
Q Consensus 299 Vs 300 (749)
+.
T Consensus 86 ~~ 87 (268)
T cd06306 86 AL 87 (268)
T ss_pred Ee
Confidence 76
No 279
>TIGR00423 radical SAM domain protein, CofH subfamily. This protein family includes the CofH protein of coenzyme F(420) biosynthesis from Methanocaldococcus jannaschii, but appears to hit genomes more broadly than just the subset that make coenzyme F(420), so that narrower group is being built as a separate family.
Probab=79.64 E-value=97 Score=33.60 Aligned_cols=139 Identities=17% Similarity=0.198 Sum_probs=85.8
Q ss_pred HHHHHHHHHHcCccceecCCcccc--cchhhhhhhhhcCCchHHHHHHHHHHHHcCCccccc-----ccCHHHHHHHH--
Q 004491 575 VDYFLKQLESIGFFGVQNFPTVGL--FDGNFRQNLEETGMGYGLEVEMIDKAHKMGLLTTPY-----AFNEGEAVKMA-- 645 (749)
Q Consensus 575 ~~~~l~~lk~~Gf~GV~NfPTvgl--iDG~fR~~LEe~G~gy~~EVemi~~A~~~gl~T~~y-----vf~~eqa~~Ma-- 645 (749)
..+.+++||+.|..-+ |-+|. .+-++|+.+-..+..++.=++.++.||+.|+-++.+ ..+.||-..++
T Consensus 106 ~~e~l~~LkeAGl~~i---~~~g~E~l~~~~~~~i~~~~~t~~~~l~~i~~a~~~Gi~~~s~~iiG~~Et~ed~~~~l~~ 182 (309)
T TIGR00423 106 IEEVLKRLKKAGLDSM---PGTGAEILDDSVRRKICPNKLSSDEWLEVIKTAHRLGIPTTATMMFGHVENPEHRVEHLLR 182 (309)
T ss_pred HHHHHHHHHHcCCCcC---CCCcchhcCHHHHHhhCCCCCCHHHHHHHHHHHHHcCCCceeeEEecCCCCHHHHHHHHHH
Confidence 4789999999887665 32231 356777777677888988899999999999988765 35666655553
Q ss_pred --hccCc-----EEEeccCCCcccc-cccc--cccCHHHHHHHHHHHHHHHHHhCCCeEEEEccCCCCCHHH-HHHHHhh
Q 004491 646 --KAGAD-----IIVAHMGLTTSGS-IGAK--TALSLDESVDRVQAIADAAHRINPDAIVLCHGGPISSPSE-AEFILKR 714 (749)
Q Consensus 646 --~AGaD-----iiv~h~GlT~gG~-~Ga~--~~~sl~~~~~~~~~i~~aa~~~~pdii~l~hGGPi~~p~d-~~~~l~~ 714 (749)
+.+.| ..++..-+..++. ++-. ...|.+++.+.+ ..+|=+.|++ .-+-+|++.-..+ .|..| +
T Consensus 183 lr~l~~~~~~f~~fiP~~f~~~~t~~l~~~~~~~~~~~e~lr~i----A~~Rl~lp~~-~~i~a~~~~l~~~~~~~~l-~ 256 (309)
T TIGR00423 183 IRKIQEKTGGFTEFIPLPFQPENNPYLEGEVRKGASGIDDLKVI----AISRILLNNI-RNIQASWVKLGLKLAQVAL-E 256 (309)
T ss_pred HHhhchhhCCeeeEEeeeecCCCChhhccCCCCCCCHHHHHHHH----HHHHHhcCCC-ccceecchhcCHHHHHHHH-h
Confidence 44544 3444222222322 3221 357788876443 4466677753 3334566666555 45555 3
Q ss_pred CCCccEEec
Q 004491 715 TKGVHGFYG 723 (749)
Q Consensus 715 ~~~~~Gf~g 723 (749)
.+++.+-|
T Consensus 257 -~Gand~~g 264 (309)
T TIGR00423 257 -FGANDLGG 264 (309)
T ss_pred -CCCccCCc
Confidence 45555544
No 280
>PRK12653 fructose-6-phosphate aldolase; Reviewed
Probab=79.63 E-value=7.4 Score=40.87 Aligned_cols=115 Identities=16% Similarity=0.215 Sum_probs=79.9
Q ss_pred HHHHHHHHHcCCcccc-cccCHHHHHHHHhccCcEEEeccCCCcccccccccccCHHHHHHHHHHHHHHHHHhCCCeEEE
Q 004491 618 VEMIDKAHKMGLLTTP-YAFNEGEAVKMAKAGADIIVAHMGLTTSGSIGAKTALSLDESVDRVQAIADAAHRINPDAIVL 696 (749)
Q Consensus 618 Vemi~~A~~~gl~T~~-yvf~~eqa~~Ma~AGaDiiv~h~GlT~gG~~Ga~~~~sl~~~~~~~~~i~~aa~~~~pdii~l 696 (749)
++.++.-++.|+-|.+ -||+.+||..-++|||+.|.+.+|.-.. .-.+.++.+++|.+..+..+++.-+|
T Consensus 93 l~A~~~L~~~GI~vn~T~vfs~~Qa~~Aa~aGa~yIspyvgR~~~---------~g~dg~~~i~~i~~~~~~~~~~tkIL 163 (220)
T PRK12653 93 LAAIKMLKAEGIPTLGTAVYGAAQGLLSALAGAEYVAPYVNRIDA---------QGGSGIQTVTDLQQLLKMHAPQAKVL 163 (220)
T ss_pred HHHHHHHHHcCCCeeEEEecCHHHHHHHHhcCCcEEEeecChHhh---------cCCChHHHHHHHHHHHHhcCCCcEEE
Confidence 7788888888987764 5999999998899999999999986632 12345667778888787778888888
Q ss_pred EccCCCCCHHHHHHHHhhCCCccEE-ecCcc----cccchHHHHHHHHHHhhcc
Q 004491 697 CHGGPISSPSEAEFILKRTKGVHGF-YGASS----MERLPVEQAITSTMRQYKS 745 (749)
Q Consensus 697 ~hGGPi~~p~d~~~~l~~~~~~~Gf-~g~Ss----~ERlP~E~ai~~~~~~FK~ 745 (749)
+.-+.+++++...+. .++|-+ +.-.- ++---++.++.+-.+.|++
T Consensus 164 --aAS~r~~~~v~~~~~--~G~d~vTip~~vl~~l~~~p~t~~~~~~F~~dw~~ 213 (220)
T PRK12653 164 --AASFKTPRQALDCLL--AGCESITLPLDVAQQMISYPAVDAAVAKFEQDWQG 213 (220)
T ss_pred --EEecCCHHHHHHHHH--cCCCEEECCHHHHHHHHcCCchHHHHHHHHHHHHH
Confidence 456778999888764 355544 22222 2223355555555555444
No 281
>TIGR02090 LEU1_arch isopropylmalate/citramalate/homocitrate synthases. Methanogens, then should and aparrently do contain all three of these enzymes. Unfortunately, phylogenetic trees do not resolve into three unambiguous clades, making assignment of function to particular genes problematic. Other archaea which lack a threonine dehydratase (mainly Euryarchaeota) should contain both a CimA and a LeuA gene. This is true of, for example, archaeoglobus fulgidis, but not for the Pyrococci which have none in this clade, but one in TIGR00973 and one in TIGRT00977 which may fulfill these roles. Other species which have only one hit to this model and lack threonine dehydratase are very likely LeuA enzymes.
Probab=79.60 E-value=19 Score=40.23 Aligned_cols=138 Identities=17% Similarity=0.153 Sum_probs=85.2
Q ss_pred CCHHHHHHHHHHcCcccee-cCCcccccchhhhhhhhhcCCchHHHHHHHHHHHHcCCccccccc---CHHHHHHHHhcc
Q 004491 573 RRVDYFLKQLESIGFFGVQ-NFPTVGLFDGNFRQNLEETGMGYGLEVEMIDKAHKMGLLTTPYAF---NEGEAVKMAKAG 648 (749)
Q Consensus 573 ~~~~~~l~~lk~~Gf~GV~-NfPTvgliDG~fR~~LEe~G~gy~~EVemi~~A~~~gl~T~~yvf---~~eqa~~Ma~AG 648 (749)
-+.-++.+.|-++||.-|. =||..+ +.|.|.++...++++-+.-.++ +.++.++..++|
T Consensus 22 ~~k~~ia~~L~~~Gv~~IEvG~p~~~-----------------~~~~e~i~~i~~~~~~~~v~~~~r~~~~di~~a~~~g 84 (363)
T TIGR02090 22 EQKVEIARKLDELGVDVIEAGFPIAS-----------------EGEFEAIKKISQEGLNAEICSLARALKKDIDKAIDCG 84 (363)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCCCC-----------------hHHHHHHHHHHhcCCCcEEEEEcccCHHHHHHHHHcC
Confidence 3456788889999987765 245432 4566889888888775443333 789999999999
Q ss_pred CcEEEeccCCCcccccccccccCHHHHHHHHHHHHHHHHHhCCCeEEEEccCCCCCHHHHHHHHhhC--CCccEEecCcc
Q 004491 649 ADIIVAHMGLTTSGSIGAKTALSLDESVDRVQAIADAAHRINPDAIVLCHGGPISSPSEAEFILKRT--KGVHGFYGASS 726 (749)
Q Consensus 649 aDiiv~h~GlT~gG~~Ga~~~~sl~~~~~~~~~i~~aa~~~~pdii~l~hGGPi~~p~d~~~~l~~~--~~~~Gf~g~Ss 726 (749)
+|.|.+.++..- -.+=.+-..|.++.++.+.+..+.|++..-.+-+-+--.+-++|+.+..+++.. .+++.++=.-+
T Consensus 85 ~~~i~i~~~~Sd-~~~~~~~~~~~~~~~~~~~~~i~~ak~~G~~v~~~~eda~r~~~~~l~~~~~~~~~~g~~~i~l~DT 163 (363)
T TIGR02090 85 VDSIHTFIATSP-IHLKYKLKKSRDEVLEKAVEAVEYAKEHGLIVEFSAEDATRTDIDFLIKVFKRAEEAGADRINIADT 163 (363)
T ss_pred cCEEEEEEcCCH-HHHHHHhCCCHHHHHHHHHHHHHHHHHcCCEEEEEEeecCCCCHHHHHHHHHHHHhCCCCEEEEeCC
Confidence 999877555321 111112234677777777777777777766544333233445666666655332 23455544444
Q ss_pred cc
Q 004491 727 ME 728 (749)
Q Consensus 727 ~E 728 (749)
.-
T Consensus 164 ~G 165 (363)
T TIGR02090 164 VG 165 (363)
T ss_pred CC
Confidence 43
No 282
>cd02932 OYE_YqiM_FMN Old yellow enzyme (OYE) YqjM-like FMN binding domain. YqjM is involved in the oxidative stress response of Bacillus subtilis. Like the other OYE members, each monomer of YqjM contains FMN as a non-covalently bound cofactor and uses NADPH as a reducing agent. The YqjM enzyme exists as a homotetramer that is assembled as a dimer of catalytically dependent dimers, while other OYE members exist only as monomers or dimers. Moreover, the protein displays a shared active site architecture where an arginine finger at the COOH terminus of one monomer extends into the active site of the adjacent monomer and is directly involved in substrate recognition. Another remarkable difference in the binding of the ligand in YqjM is represented by the contribution of the NH2-terminal tyrosine instead of a COOH-terminal tyrosine in OYE and its homologs.
Probab=79.56 E-value=30 Score=37.90 Aligned_cols=154 Identities=19% Similarity=0.246 Sum_probs=86.6
Q ss_pred cccHHHHHHHHHHHhhcCCCeEEeccccchhhhhhhhcCCcEEEEeccccc------------cccC-CccccccccccC
Q 004491 475 LQRTQAILSKLKYQIDKGLPIIGAGAGTGISAKFEEAGGVDLIVLYNSGRF------------RMAG-RGSLAGLLPFAD 541 (749)
Q Consensus 475 ~~~r~~il~~L~~~i~~~~piig~gaGtGlsAk~ae~gGaDli~~ynsGrf------------R~~G-~~Slagllpygd 541 (749)
-|+.+||.+-..+-+ -.||.+.+.|.|-|=+.-.-.| |-.. -||+ -|
T Consensus 143 ~mt~~eI~~ii~~~~--------------~aA~~a~~aGfDgVei~~~~gyLl~qFlsp~~N~R~D~yGgsl------~n 202 (336)
T cd02932 143 ELTREEIAEVVDAFV--------------AAARRAVEAGFDVIEIHAAHGYLLHQFLSPLSNKRTDEYGGSL------EN 202 (336)
T ss_pred cCCHHHHHHHHHHHH--------------HHHHHHHHcCCCEEEEccccccHHHHhcCCccCCCCcccCCCH------HH
Confidence 488999865555433 4799999999999876422111 2211 1222 22
Q ss_pred chHHHHHhhhhhcCCC-CCCceEEeeccCCCC------CCHHHHHHHHHHcCccceecCCcccccchhhhhhhhhcCCch
Q 004491 542 ANAVVLEMANEVLPVV-KEVPVLAGVCGTDPF------RRVDYFLKQLESIGFFGVQNFPTVGLFDGNFRQNLEETGMGY 614 (749)
Q Consensus 542 aN~iv~e~~~eilp~v-~~tPViaGv~atDP~------~~~~~~l~~lk~~Gf~GV~NfPTvgliDG~fR~~LEe~G~gy 614 (749)
-=..+.|..+.|--.+ ++.||..=++..|.. .+.-+|++.|.+.|..=|. . +.|... +......+-+|
T Consensus 203 r~rf~~eiv~aIR~~vG~d~~v~vri~~~~~~~~g~~~~e~~~ia~~Le~~gvd~ie-v-~~g~~~---~~~~~~~~~~~ 277 (336)
T cd02932 203 RMRFLLEVVDAVRAVWPEDKPLFVRISATDWVEGGWDLEDSVELAKALKELGVDLID-V-SSGGNS---PAQKIPVGPGY 277 (336)
T ss_pred HhHHHHHHHHHHHHHcCCCceEEEEEcccccCCCCCCHHHHHHHHHHHHHcCCCEEE-E-CCCCCC---cccccCCCccc
Confidence 2234455543333333 367887766654321 2345777888888754332 0 001011 11111112233
Q ss_pred H-HHHHHHHHHHHcCCcccccccCHHHHHHHHhcc-CcEEE
Q 004491 615 G-LEVEMIDKAHKMGLLTTPYAFNEGEAVKMAKAG-ADIIV 653 (749)
Q Consensus 615 ~-~EVemi~~A~~~gl~T~~yvf~~eqa~~Ma~AG-aDiiv 653 (749)
. ...+-|+++-..=+++..-++++++++++.+.| +|++-
T Consensus 278 ~~~~~~~ir~~~~iPVi~~G~i~t~~~a~~~l~~g~aD~V~ 318 (336)
T cd02932 278 QVPFAERIRQEAGIPVIAVGLITDPEQAEAILESGRADLVA 318 (336)
T ss_pred cHHHHHHHHhhCCCCEEEeCCCCCHHHHHHHHHcCCCCeeh
Confidence 2 233456666566788888999999999999998 89864
No 283
>cd00959 DeoC 2-deoxyribose-5-phosphate aldolase (DERA) of the DeoC family. DERA belongs to the class I aldolases and catalyzes a reversible aldol reaction between acetaldehyde and glyceraldehyde 3-phosphate to generate 2-deoxyribose 5-phosphate. DERA is unique in catalyzing the aldol reaction between two aldehydes, and its broad substrate specificity confers considerable utility as a biocatalyst, offering an environmentally benign alternative to chiral transition metal catalysis of the asymmetric aldol reaction.
Probab=79.33 E-value=33 Score=35.03 Aligned_cols=113 Identities=19% Similarity=0.246 Sum_probs=74.2
Q ss_pred HHHHHHHHcCccceecCCccccc-chhhhhhhhhcCCchHHHHHHHHHHHHcCC-----cccccccCHHH----HHHHHh
Q 004491 577 YFLKQLESIGFFGVQNFPTVGLF-DGNFRQNLEETGMGYGLEVEMIDKAHKMGL-----LTTPYAFNEGE----AVKMAK 646 (749)
Q Consensus 577 ~~l~~lk~~Gf~GV~NfPTvgli-DG~fR~~LEe~G~gy~~EVemi~~A~~~gl-----~T~~yvf~~eq----a~~Ma~ 646 (749)
.-.++..++|-..|--.+-+|.+ +|.+.+.+ .|+.-++.+-. |+ +.+++. +.++ ++...+
T Consensus 73 ~eve~A~~~GAdevdvv~~~g~~~~~~~~~~~--------~ei~~v~~~~~-g~~lkvI~e~~~l-~~~~i~~a~ria~e 142 (203)
T cd00959 73 AEAREAIADGADEIDMVINIGALKSGDYEAVY--------EEIAAVVEACG-GAPLKVILETGLL-TDEEIIKACEIAIE 142 (203)
T ss_pred HHHHHHHHcCCCEEEEeecHHHHhCCCHHHHH--------HHHHHHHHhcC-CCeEEEEEecCCC-CHHHHHHHHHHHHH
Confidence 33777888999999988888876 56665554 35665555543 53 344555 4455 444469
Q ss_pred ccCcEEEeccCCCcccccccccccCHHHHHHHHHHHHHHHHHhCCCeEEEEccCCCCCHHHHHHHHhh
Q 004491 647 AGADIIVAHMGLTTSGSIGAKTALSLDESVDRVQAIADAAHRINPDAIVLCHGGPISSPSEAEFILKR 714 (749)
Q Consensus 647 AGaDiiv~h~GlT~gG~~Ga~~~~sl~~~~~~~~~i~~aa~~~~pdii~l~hGGPi~~p~d~~~~l~~ 714 (749)
+|||+|-.--|++.+| .|+++. +.+.+.++ ..+-+..-|||= +.+++..+++-
T Consensus 143 ~GaD~IKTsTG~~~~~-------at~~~v----~~~~~~~~---~~v~ik~aGGik-t~~~~l~~~~~ 195 (203)
T cd00959 143 AGADFIKTSTGFGPGG-------ATVEDV----KLMKEAVG---GRVGVKAAGGIR-TLEDALAMIEA 195 (203)
T ss_pred hCCCEEEcCCCCCCCC-------CCHHHH----HHHHHHhC---CCceEEEeCCCC-CHHHHHHHHHh
Confidence 9999999998887544 344443 33333333 446677777765 99999998843
No 284
>COG0157 NadC Nicotinate-nucleotide pyrophosphorylase [Coenzyme metabolism]
Probab=79.30 E-value=16 Score=40.00 Aligned_cols=83 Identities=23% Similarity=0.235 Sum_probs=59.7
Q ss_pred HHHHHHHHcCCccc---ccccCHHHHHHHHhccCcEEEeccCCCcccccccccccCHHHHHHHHHHHHHHHHHhCCCeEE
Q 004491 619 EMIDKAHKMGLLTT---PYAFNEGEAVKMAKAGADIIVAHMGLTTSGSIGAKTALSLDESVDRVQAIADAAHRINPDAIV 695 (749)
Q Consensus 619 emi~~A~~~gl~T~---~yvf~~eqa~~Ma~AGaDiiv~h~GlT~gG~~Ga~~~~sl~~~~~~~~~i~~aa~~~~pdii~ 695 (749)
+.|++||+.==++. -=|=|.||++++++||||||-.- -.|.++..+.++.+ ..++.+++
T Consensus 176 ~Av~~aR~~~~~~~kIEVEvesle~~~eAl~agaDiImLD-------------Nm~~e~~~~av~~l-----~~~~~~~l 237 (280)
T COG0157 176 EAVRRARAAAPFTKKIEVEVESLEEAEEALEAGADIIMLD-------------NMSPEELKEAVKLL-----GLAGRALL 237 (280)
T ss_pred HHHHHHHHhCCCCceEEEEcCCHHHHHHHHHcCCCEEEec-------------CCCHHHHHHHHHHh-----ccCCceEE
Confidence 45667776533322 23568899999999999999874 56777666555554 68889999
Q ss_pred EEccCCCCCHHHHHHHHhhCCCccEEec
Q 004491 696 LCHGGPISSPSEAEFILKRTKGVHGFYG 723 (749)
Q Consensus 696 l~hGGPi~~p~d~~~~l~~~~~~~Gf~g 723 (749)
-|.|| -+++.+..+- . +++|-+.-
T Consensus 238 EaSGg--It~~ni~~yA-~-tGVD~IS~ 261 (280)
T COG0157 238 EASGG--ITLENIREYA-E-TGVDVISV 261 (280)
T ss_pred EEeCC--CCHHHHHHHh-h-cCCCEEEe
Confidence 99999 6888888775 3 56664443
No 285
>TIGR00587 nfo apurinic endonuclease (APN1). All proteins in this family for which functions are known are 5' AP endonculeases that are used in base excision repair and the repair of abasic sites in DNA.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=79.12 E-value=40 Score=35.86 Aligned_cols=151 Identities=17% Similarity=0.148 Sum_probs=82.5
Q ss_pred HHHHHHHHHHcCccceecCCcccccchhhhhhhhhcCCchHHHHHHHHHH-HHcCC------cccccccC-----H----
Q 004491 575 VDYFLKQLESIGFFGVQNFPTVGLFDGNFRQNLEETGMGYGLEVEMIDKA-HKMGL------LTTPYAFN-----E---- 638 (749)
Q Consensus 575 ~~~~l~~lk~~Gf~GV~NfPTvgliDG~fR~~LEe~G~gy~~EVemi~~A-~~~gl------~T~~yvf~-----~---- 638 (749)
+..=++++++.||.+||=|+.-- |.+. .-+-...+++-++++ .+.++ .-.||..| +
T Consensus 13 ~~~a~~~~~~~G~~~~qif~~~P------~~w~--~~~~~~~~~~~~~~~~~~~~~~~~~i~~Hapy~iNlas~~~~~r~ 84 (274)
T TIGR00587 13 LQAAYNRAAEIGATAFMFFLKSP------RWWR--RPMLEEEVIDWFKAALETNKNLSQIVLVHAPYLINLASPDEEKEE 84 (274)
T ss_pred HHHHHHHHHHhCCCEEEEEecCc------cccC--CCCCCHHHHHHHHHHHHHcCCCCcceeccCCeeeecCCCCHHHHH
Confidence 45678999999999999884221 1111 111223445555443 33333 12345444 1
Q ss_pred -------HHHHHHHhccCcEEEeccCCCcccccccccccCHHHHHHHHHHHHHHHHHhCCCeEEEEc---cC--CC-CCH
Q 004491 639 -------GEAVKMAKAGADIIVAHMGLTTSGSIGAKTALSLDESVDRVQAIADAAHRINPDAIVLCH---GG--PI-SSP 705 (749)
Q Consensus 639 -------eqa~~Ma~AGaDiiv~h~GlT~gG~~Ga~~~~sl~~~~~~~~~i~~aa~~~~pdii~l~h---GG--Pi-~~p 705 (749)
+..+.-.+-||+.+|.|.|..... +-+++.+++.+..+...+...++.++.- |. .+ .+|
T Consensus 85 ~sv~~~~~~i~~A~~lga~~vv~H~G~~~~~--------~~e~~~~~~~~~l~~l~~~~~~v~l~lEN~~~~~~~l~~~~ 156 (274)
T TIGR00587 85 KSLDVLDEELKRCELLGIMLYNFHPGSALKC--------SEEEGLDNLIESLNVVIKETKIVTILLENMAGQGSELGRSF 156 (274)
T ss_pred HHHHHHHHHHHHHHHcCCCEEEECCCCCCCC--------CHHHHHHHHHHHHHHHHhccCCCEEEEEeCCCCCCccCCCH
Confidence 122233467999999999986532 2345555544444433334445656653 22 23 499
Q ss_pred HHHHHHHhhCCC--ccE--------EecCcccccchHHHHHHHHHHhhc
Q 004491 706 SEAEFILKRTKG--VHG--------FYGASSMERLPVEQAITSTMRQYK 744 (749)
Q Consensus 706 ~d~~~~l~~~~~--~~G--------f~g~Ss~ERlP~E~ai~~~~~~FK 744 (749)
+++.++++.+.. --| |..+ +.+-.+..+.+..+.|.
T Consensus 157 ~el~~ll~~~~~~~~lg~~lDt~H~~~~g---~~~~~~~~~~~~~~~~~ 202 (274)
T TIGR00587 157 EELAYIIKVIVDKRRIGVCLDTCHFFAAG---YDITTKAYFEVVKNEFD 202 (274)
T ss_pred HHHHHHHHhcCCCCceEEEEEhhhHHhcC---CCcCCHHHHHHHHHHHH
Confidence 999999986532 123 2222 44545566666665553
No 286
>PRK11858 aksA trans-homoaconitate synthase; Reviewed
Probab=78.80 E-value=20 Score=40.31 Aligned_cols=138 Identities=17% Similarity=0.149 Sum_probs=91.2
Q ss_pred CHHHHHHHHHHcCcccee-cCCcccccchhhhhhhhhcCCchHHHHHHHHHHHHcCCcccccccC---HHHHHHHHhccC
Q 004491 574 RVDYFLKQLESIGFFGVQ-NFPTVGLFDGNFRQNLEETGMGYGLEVEMIDKAHKMGLLTTPYAFN---EGEAVKMAKAGA 649 (749)
Q Consensus 574 ~~~~~l~~lk~~Gf~GV~-NfPTvgliDG~fR~~LEe~G~gy~~EVemi~~A~~~gl~T~~yvf~---~eqa~~Ma~AGa 649 (749)
+.-.+.+.|-++||.-|- =||.++ +.|.|.++...+.++-+...+++ .++.++..++|+
T Consensus 27 ~k~~ia~~L~~~GV~~IE~G~p~~~-----------------~~~~e~i~~i~~~~~~~~i~~~~r~~~~di~~a~~~g~ 89 (378)
T PRK11858 27 EKLAIARMLDEIGVDQIEAGFPAVS-----------------EDEKEAIKAIAKLGLNASILALNRAVKSDIDASIDCGV 89 (378)
T ss_pred HHHHHHHHHHHhCCCEEEEeCCCcC-----------------hHHHHHHHHHHhcCCCeEEEEEcccCHHHHHHHHhCCc
Confidence 456788899999987764 266542 34566788888888776666666 888999999999
Q ss_pred cEEEeccCCCcccccccccccCHHHHHHHHHHHHHHHHHhCCCeEEEEccCCCCCHHHHHHHHhhC--CCccEEecCccc
Q 004491 650 DIIVAHMGLTTSGSIGAKTALSLDESVDRVQAIADAAHRINPDAIVLCHGGPISSPSEAEFILKRT--KGVHGFYGASSM 727 (749)
Q Consensus 650 Diiv~h~GlT~gG~~Ga~~~~sl~~~~~~~~~i~~aa~~~~pdii~l~hGGPi~~p~d~~~~l~~~--~~~~Gf~g~Ss~ 727 (749)
|.|.+=.... --.+=.+-..|.+++.+.+.+..+.|++..-.+.+-|-=+.-++|+.+..+++.. .+++-++=.-++
T Consensus 90 ~~i~i~~~~S-d~h~~~~~~~s~~~~l~~~~~~v~~a~~~G~~v~~~~ed~~r~~~~~l~~~~~~~~~~Ga~~I~l~DT~ 168 (378)
T PRK11858 90 DAVHIFIATS-DIHIKHKLKKTREEVLERMVEAVEYAKDHGLYVSFSAEDASRTDLDFLIEFAKAAEEAGADRVRFCDTV 168 (378)
T ss_pred CEEEEEEcCC-HHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEeccCCCCCHHHHHHHHHHHHhCCCCEEEEeccC
Confidence 9765543321 1111123346889999999999999988887766555444456777777776442 234555444444
Q ss_pred cc
Q 004491 728 ER 729 (749)
Q Consensus 728 ER 729 (749)
-.
T Consensus 169 G~ 170 (378)
T PRK11858 169 GI 170 (378)
T ss_pred CC
Confidence 43
No 287
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=78.75 E-value=11 Score=35.41 Aligned_cols=70 Identities=20% Similarity=0.350 Sum_probs=45.5
Q ss_pred HHH-HHHHhccCcEEEeccCCCcccccccccccCHHHHHHHHHHHHHHHHHhCC-CeEEEEccCCCCCHHHHHHHHhhCC
Q 004491 639 GEA-VKMAKAGADIIVAHMGLTTSGSIGAKTALSLDESVDRVQAIADAAHRINP-DAIVLCHGGPISSPSEAEFILKRTK 716 (749)
Q Consensus 639 eqa-~~Ma~AGaDiiv~h~GlT~gG~~Ga~~~~sl~~~~~~~~~i~~aa~~~~p-dii~l~hGGPi~~p~d~~~~l~~~~ 716 (749)
|+. +...+-++|+||.= .+..+..+.+.++.+..++..+ ++.+++ ||.+ .+++.+.. ++ .
T Consensus 40 e~~~~~a~~~~~d~V~iS--------------~~~~~~~~~~~~~~~~L~~~~~~~i~i~~-GG~~-~~~~~~~~-~~-~ 101 (122)
T cd02071 40 EEIVEAAIQEDVDVIGLS--------------SLSGGHMTLFPEVIELLRELGAGDILVVG-GGII-PPEDYELL-KE-M 101 (122)
T ss_pred HHHHHHHHHcCCCEEEEc--------------ccchhhHHHHHHHHHHHHhcCCCCCEEEE-ECCC-CHHHHHHH-HH-C
Confidence 444 44458899999972 2345666677888888888766 555555 4433 24555544 35 6
Q ss_pred CccEEecCcc
Q 004491 717 GVHGFYGASS 726 (749)
Q Consensus 717 ~~~Gf~g~Ss 726 (749)
++++||+.+|
T Consensus 102 G~d~~~~~~~ 111 (122)
T cd02071 102 GVAEIFGPGT 111 (122)
T ss_pred CCCEEECCCC
Confidence 7999998876
No 288
>COG1646 Predicted phosphate-binding enzymes, TIM-barrel fold [General function prediction only]
Probab=78.62 E-value=1.8 Score=45.93 Aligned_cols=44 Identities=34% Similarity=0.392 Sum_probs=32.9
Q ss_pred CCchHHHHHHHHHHHHcC-CcccccccCHHHHHHHHhccCcEEEe
Q 004491 611 GMGYGLEVEMIDKAHKMG-LLTTPYAFNEGEAVKMAKAGADIIVA 654 (749)
Q Consensus 611 G~gy~~EVemi~~A~~~g-l~T~~yvf~~eqa~~Ma~AGaDiiv~ 654 (749)
|.|+--=+||+++-.+.- |+-=+=..++|||++|++||||+||.
T Consensus 175 ga~~Pv~~e~v~~v~~~~~LivGGGIrs~E~A~~~a~agAD~IVt 219 (240)
T COG1646 175 GAGDPVPVEMVSRVLSDTPLIVGGGIRSPEQAREMAEAGADTIVT 219 (240)
T ss_pred CCCCCcCHHHHHHhhccceEEEcCCcCCHHHHHHHHHcCCCEEEE
Confidence 445556688998777663 22233467999999999999999995
No 289
>TIGR01306 GMP_reduct_2 guanosine monophosphate reductase, bacterial. A deep split separates two families of GMP reductase. The other (TIGR01305) is found in eukaryotic and some proteobacterial lineages, including E. coli, while this family is found in a variety of bacterial lineages.
Probab=78.45 E-value=23 Score=39.42 Aligned_cols=140 Identities=17% Similarity=0.241 Sum_probs=83.2
Q ss_pred HHhhcCCCeEEeccccchhh-----hhhhhc-CCcEEEEeccccccccCCccccccccccCchHHHHHhhhhhcCCCCCC
Q 004491 487 YQIDKGLPIIGAGAGTGISA-----KFEEAG-GVDLIVLYNSGRFRMAGRGSLAGLLPFADANAVVLEMANEVLPVVKEV 560 (749)
Q Consensus 487 ~~i~~~~piig~gaGtGlsA-----k~ae~g-GaDli~~ynsGrfR~~G~~SlagllpygdaN~iv~e~~~eilp~v~~t 560 (749)
++++....++++++|+.... +..+++ .+|+|++..+ =| -|.-+.++-++|-...+..
T Consensus 76 rk~k~~~L~v~~SvG~t~e~~~r~~~lv~a~~~~d~i~~D~a----------------hg-~s~~~~~~i~~i~~~~p~~ 138 (321)
T TIGR01306 76 KDMQERGLFASISVGVKACEYEFVTQLAEEALTPEYITIDIA----------------HG-HSNSVINMIKHIKTHLPDS 138 (321)
T ss_pred HhccccccEEEEEcCCCHHHHHHHHHHHhcCCCCCEEEEeCc----------------cC-chHHHHHHHHHHHHhCCCC
Confidence 33444445777777776542 233332 2799997643 12 2455666766655555555
Q ss_pred ceEEe-eccCCCCCCHHHHHHHHHHcCccceecCCcccccchhhhhhhhhcCCchH-HHHHHHHHHHHc---CCcccccc
Q 004491 561 PVLAG-VCGTDPFRRVDYFLKQLESIGFFGVQNFPTVGLFDGNFRQNLEETGMGYG-LEVEMIDKAHKM---GLLTTPYA 635 (749)
Q Consensus 561 PViaG-v~atDP~~~~~~~l~~lk~~Gf~GV~NfPTvgliDG~fR~~LEe~G~gy~-~EVemi~~A~~~---gl~T~~yv 635 (749)
+||+| |. -.+.-++|.+.|..||. ||.=-|..-..-+++|.|+. .-+..|..+++. -++.-.=+
T Consensus 139 ~vi~GnV~-------t~e~a~~l~~aGad~I~----V~~G~G~~~~tr~~~g~g~~~~~l~ai~ev~~a~~~pVIadGGI 207 (321)
T TIGR01306 139 FVIAGNVG-------TPEAVRELENAGADATK----VGIGPGKVCITKIKTGFGTGGWQLAALRWCAKAARKPIIADGGI 207 (321)
T ss_pred EEEEecCC-------CHHHHHHHHHcCcCEEE----ECCCCCccccceeeeccCCCchHHHHHHHHHHhcCCeEEEECCc
Confidence 69999 74 45678889999999997 44333332111124677763 234556555542 22333345
Q ss_pred cCHHHHHHHHhccCcEEEe
Q 004491 636 FNEGEAVKMAKAGADIIVA 654 (749)
Q Consensus 636 f~~eqa~~Ma~AGaDiiv~ 654 (749)
.+-.++.+...+|||.+-.
T Consensus 208 r~~~Di~KALa~GAd~Vmi 226 (321)
T TIGR01306 208 RTHGDIAKSIRFGASMVMI 226 (321)
T ss_pred CcHHHHHHHHHcCCCEEee
Confidence 5677888888899998654
No 290
>PLN02495 oxidoreductase, acting on the CH-CH group of donors
Probab=78.43 E-value=69 Score=36.51 Aligned_cols=169 Identities=17% Similarity=0.160 Sum_probs=100.7
Q ss_pred HHHHHHHHHHhhc--CCCeEEeccc-cc-----hhhhhhhhcCCcEEEE-e---ccccccccCCccccccccccCchHHH
Q 004491 479 QAILSKLKYQIDK--GLPIIGAGAG-TG-----ISAKFEEAGGVDLIVL-Y---NSGRFRMAGRGSLAGLLPFADANAVV 546 (749)
Q Consensus 479 ~~il~~L~~~i~~--~~piig~gaG-tG-----lsAk~ae~gGaDli~~-y---nsGrfR~~G~~SlagllpygdaN~iv 546 (749)
++.|+.+++.-++ ..|+|..-+| .- -.|+..|..|||.|-+ + |...-|-. =+.++.--+.+
T Consensus 98 ~~~l~~i~~~k~~~~~~pvIaSi~~~~s~~~~~~~a~~~e~~GaD~iELNiSCPn~~~~r~~-------g~~~gq~~e~~ 170 (385)
T PLN02495 98 ETMLAEFKQLKEEYPDRILIASIMEEYNKDAWEEIIERVEETGVDALEINFSCPHGMPERKM-------GAAVGQDCDLL 170 (385)
T ss_pred HHHHHHHHHHHhhCCCCcEEEEccCCCCHHHHHHHHHHHHhcCCCEEEEECCCCCCCCcCcc-------chhhccCHHHH
Confidence 4556655442222 4699987766 22 3566677789998875 3 32222221 12344445677
Q ss_pred HHhhhhhcCCCCCCceEEeeccCCCCCCHHHHHHHHHHcCccceecCCcccc---cc-hhhhh--hhh-hcCCc-hH-H-
Q 004491 547 LEMANEVLPVVKEVPVLAGVCGTDPFRRVDYFLKQLESIGFFGVQNFPTVGL---FD-GNFRQ--NLE-ETGMG-YG-L- 616 (749)
Q Consensus 547 ~e~~~eilp~v~~tPViaGv~atDP~~~~~~~l~~lk~~Gf~GV~NfPTvgl---iD-G~fR~--~LE-e~G~g-y~-~- 616 (749)
.+..+.|-..+ ++||+.=+... +.++..+.+.+.+.|-.||.=+=|+.- || -+++- .++ ..+.| |. .
T Consensus 171 ~~i~~~Vk~~~-~iPv~vKLsPn--~t~i~~ia~aa~~~Gadgi~liNT~~~~~~ID~~t~~p~~~~~~~~~~GGlSG~a 247 (385)
T PLN02495 171 EEVCGWINAKA-TVPVWAKMTPN--ITDITQPARVALKSGCEGVAAINTIMSVMGINLDTLRPEPCVEGYSTPGGYSSKA 247 (385)
T ss_pred HHHHHHHHHhh-cCceEEEeCCC--hhhHHHHHHHHHHhCCCEEEEecccCcccccccccCccccccCCCCCCCCccchh
Confidence 66665554444 58999988732 226899999999999999986666541 43 11222 221 11222 33 2
Q ss_pred --HH--HHHHHHHH---------cCCcccccccCHHHHHHHHhccCcEEEeccC
Q 004491 617 --EV--EMIDKAHK---------MGLLTTPYAFNEGEAVKMAKAGADIIVAHMG 657 (749)
Q Consensus 617 --EV--emi~~A~~---------~gl~T~~yvf~~eqa~~Ma~AGaDiiv~h~G 657 (749)
.+ .++++.++ ..+.-+.=|.|.++|.+|..||||.+=+--+
T Consensus 248 lkpiAl~~v~~i~~~~~~~~~~~ipIiGvGGI~s~~Da~e~i~aGAs~VQv~Ta 301 (385)
T PLN02495 248 VRPIALAKVMAIAKMMKSEFPEDRSLSGIGGVETGGDAAEFILLGADTVQVCTG 301 (385)
T ss_pred hhHHHHHHHHHHHHHHhhhccCCCcEEEECCCCCHHHHHHHHHhCCCceeEeee
Confidence 22 22222222 4577888899999999999999998754433
No 291
>cd04747 OYE_like_5_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 5. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=78.20 E-value=89 Score=35.20 Aligned_cols=94 Identities=19% Similarity=0.178 Sum_probs=57.4
Q ss_pred cccHHHHHHHHHHHhhcCCCeEEeccccchhhhhhhhcCCcEEEEeccc----------cc--cccCC-ccccccccccC
Q 004491 475 LQRTQAILSKLKYQIDKGLPIIGAGAGTGISAKFEEAGGVDLIVLYNSG----------RF--RMAGR-GSLAGLLPFAD 541 (749)
Q Consensus 475 ~~~r~~il~~L~~~i~~~~piig~gaGtGlsAk~ae~gGaDli~~ynsG----------rf--R~~G~-~Slagllpygd 541 (749)
-||.+||-+-.++-+ -.|+.|.++|.|.|=+.-+- .+ |-..- ||+ -|
T Consensus 133 ~mt~~eI~~ii~~f~--------------~AA~~a~~aGfDgVeih~ahGyLl~qFLSp~~N~RtDeYGGsl------en 192 (361)
T cd04747 133 EMTEADIDDVIAAFA--------------RAAADARRLGFDGIELHGAHGYLIDQFFWAGTNRRADGYGGSL------AA 192 (361)
T ss_pred cCCHHHHHHHHHHHH--------------HHHHHHHHcCCCEEEEecccchHHHHhcCCCCCCCCCCCCCCH------HH
Confidence 488888876665543 57999999999999876433 12 32221 122 12
Q ss_pred chHHHHHhhhhhcCCC-CCCceEEeeccC--CCC-----C---CHHHHHHHHHHcCcc
Q 004491 542 ANAVVLEMANEVLPVV-KEVPVLAGVCGT--DPF-----R---RVDYFLKQLESIGFF 588 (749)
Q Consensus 542 aN~iv~e~~~eilp~v-~~tPViaGv~at--DP~-----~---~~~~~l~~lk~~Gf~ 588 (749)
-=.+++|..+.|--.+ +|.||..=+++. +.+ . ++.++++.|.+.|+.
T Consensus 193 R~Rf~~eii~air~~vG~d~~v~vRis~~~~~~~~~~~g~~~~e~~~~~~~l~~~gvd 250 (361)
T cd04747 193 RSRFAAEVVKAIRAAVGPDFPIILRFSQWKQQDYTARLADTPDELEALLAPLVDAGVD 250 (361)
T ss_pred HHHHHHHHHHHHHHHcCCCCeEEEEECcccccccccCCCCCHHHHHHHHHHHHHcCCC
Confidence 2345555555555555 367888777763 233 1 345778888888753
No 292
>cd07937 DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcarboxylase 5S, carboxyltransferase domain. This family includes the carboxyltransferase domains of pyruvate carboxylase (PC) and the transcarboxylase (TC) 5S subunit. Transcarboxylase 5S is a cobalt-dependent metalloenzyme subunit of the biotin-dependent transcarboxylase multienzyme complex. Transcarboxylase 5S transfers carbon dioxide from the 1.3S biotin to pyruvate in the second of two carboxylation reactions catalyzed by TC. The first reaction involves the transfer of carbon dioxide from methylmalonyl-CoA to the 1.3S biotin, and is catalyzed by the 12S subunit. These two steps allow a carboxylate group to be transferred from oxaloacetate to propionyl-CoA to yield pyruvate and methylmalonyl-CoA. The catalytic domain of transcarboxylase 5S has a canonical TIM-barrel fold with a large C-terminal extension that forms a funnel leading to the active site. Transcarboxylase 5S forms a homodimer and there are six dimers per complex
Probab=78.12 E-value=44 Score=35.87 Aligned_cols=90 Identities=17% Similarity=0.137 Sum_probs=57.0
Q ss_pred hhhcCCCCCCceEEeecc-----CCCCC--CHHHHHHHHHHcCccceecCCcccccchhhhhhhhhcCCchHHHHHHHHH
Q 004491 551 NEVLPVVKEVPVLAGVCG-----TDPFR--RVDYFLKQLESIGFFGVQNFPTVGLFDGNFRQNLEETGMGYGLEVEMIDK 623 (749)
Q Consensus 551 ~eilp~v~~tPViaGv~a-----tDP~~--~~~~~l~~lk~~Gf~GV~NfPTvgliDG~fR~~LEe~G~gy~~EVemi~~ 623 (749)
+++....+++++.+-..+ ..|+- -+..+++...+.|...|.-|=.+.- .++=.++++.
T Consensus 62 ~~~~~~~~~~~l~~~~r~~~~~~~~~~p~~~~~~di~~~~~~g~~~iri~~~~~~---------------~~~~~~~i~~ 126 (275)
T cd07937 62 RELRKAMPNTPLQMLLRGQNLVGYRHYPDDVVELFVEKAAKNGIDIFRIFDALND---------------VRNLEVAIKA 126 (275)
T ss_pred HHHHHhCCCCceehhcccccccCccCCCcHHHHHHHHHHHHcCCCEEEEeecCCh---------------HHHHHHHHHH
Confidence 333333445776654433 23333 3889999999999887666521111 2455678999
Q ss_pred HHHcCCcccccc-------cC----HHHHHHHHhccCcEEEec
Q 004491 624 AHKMGLLTTPYA-------FN----EGEAVKMAKAGADIIVAH 655 (749)
Q Consensus 624 A~~~gl~T~~yv-------f~----~eqa~~Ma~AGaDiiv~h 655 (749)
|+++|+....++ ++ .+-++++.++|||.|+.-
T Consensus 127 ak~~G~~v~~~i~~~~~~~~~~~~~~~~~~~~~~~Ga~~i~l~ 169 (275)
T cd07937 127 VKKAGKHVEGAICYTGSPVHTLEYYVKLAKELEDMGADSICIK 169 (275)
T ss_pred HHHCCCeEEEEEEecCCCCCCHHHHHHHHHHHHHcCCCEEEEc
Confidence 999998654322 33 355667789999998764
No 293
>PF01136 Peptidase_U32: Peptidase family U32 This is family U32 in the peptidase classification. ; InterPro: IPR001539 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. The peptidases families associated with clan U- have an unknown catalytic mechanism as the protein fold of the active site domain and the active site residues have not been reported. This is a group of peptidases belonging to MEROPS peptidase family U32 (clan U-). The type example is collagenase (gene prtC) from Porphyromonas gingivalis (Bacteroides gingivalis) [], which is an enzyme that degrades type I collagen and that seems to require a metal cofactor. The product of PrtC is evolutionary related to a number of uncharacterised proteins with a well conserved region containing two cysteines.; GO: 0008233 peptidase activity, 0006508 proteolysis
Probab=78.02 E-value=9.5 Score=39.05 Aligned_cols=86 Identities=20% Similarity=0.333 Sum_probs=62.6
Q ss_pred CHHHHHHHHHHcCccceecCCcccccchhhhhhhhhcCCchHHHHHHHHHHHHc--CC----cccccccCHHHHHHHHhc
Q 004491 574 RVDYFLKQLESIGFFGVQNFPTVGLFDGNFRQNLEETGMGYGLEVEMIDKAHKM--GL----LTTPYAFNEGEAVKMAKA 647 (749)
Q Consensus 574 ~~~~~l~~lk~~Gf~GV~NfPTvgliDG~fR~~LEe~G~gy~~EVemi~~A~~~--gl----~T~~yvf~~eqa~~Ma~A 647 (749)
.+.+++++|+++|+.||.= ....+++.++++ ++ =+.-.+||.++++.+.+-
T Consensus 3 ~~~~~l~~l~~~g~dgi~v-----------------------~~~g~~~~~k~~~~~~~i~~~~~~nv~N~~s~~~~~~~ 59 (233)
T PF01136_consen 3 ELEKYLDKLKELGVDGILV-----------------------SNPGLLELLKELGPDLKIIADYSLNVFNSESARFLKEL 59 (233)
T ss_pred HHHHHHHHHHhCCCCEEEE-----------------------cCHHHHHHHHHhCCCCcEEEecCccCCCHHHHHHHHHc
Confidence 4788999999999999631 123456666666 32 245689999999999999
Q ss_pred cCcEEEeccCCCcccccccccccCHHHHHHHHHHHHHHHHHhCCCeEEEEccC
Q 004491 648 GADIIVAHMGLTTSGSIGAKTALSLDESVDRVQAIADAAHRINPDAIVLCHGG 700 (749)
Q Consensus 648 GaDiiv~h~GlT~gG~~Ga~~~~sl~~~~~~~~~i~~aa~~~~pdii~l~hGG 700 (749)
|++-+|+..-|| .+.+++|.+.+. +.++=+++||-
T Consensus 60 G~~~i~ls~EL~----------------~~ei~~i~~~~~--~~~~Ev~v~G~ 94 (233)
T PF01136_consen 60 GASRITLSPELS----------------LEEIKEIAENSP--GVPLEVIVHGN 94 (233)
T ss_pred CCCEEEECccCC----------------HHHHHHHHHhCC--CCeEEEEEeCC
Confidence 999999987653 233444543333 88889999987
No 294
>TIGR01142 purT phosphoribosylglycinamide formyltransferase 2. This enzyme is an alternative to PurN (TIGR00639)
Probab=77.98 E-value=27 Score=38.23 Aligned_cols=59 Identities=20% Similarity=0.271 Sum_probs=38.3
Q ss_pred HHHcCCccccccc--CHHHHHHHH-hccCcEEEeccCCCcccccccccccCHHHHHHHHHHHHH
Q 004491 624 AHKMGLLTTPYAF--NEGEAVKMA-KAGADIIVAHMGLTTSGSIGAKTALSLDESVDRVQAIAD 684 (749)
Q Consensus 624 A~~~gl~T~~yvf--~~eqa~~Ma-~AGaDiiv~h~GlT~gG~~Ga~~~~sl~~~~~~~~~i~~ 684 (749)
+++.|+-|.+|.+ +.+++.+.+ +-|-=+|+=-. .-+|+.|.....+.+|..+..+.+.+
T Consensus 109 ~~~~gip~p~~~~~~~~~~~~~~~~~~g~P~VvKP~--~g~~s~gv~~v~~~~el~~~~~~~~~ 170 (380)
T TIGR01142 109 AEELGLPTSRYMFADSLDELREAVEKIGYPCVVKPV--MSSSGKGQSVVRGPEDIEKAWEYAQE 170 (380)
T ss_pred HHHCCCCCCCceEeCCHHHHHHHHHHcCCCEEEEEC--CCcCCCCeEEECCHHHHHHHHHHHHh
Confidence 3788999998744 667776554 45555555433 23667787777787776666666544
No 295
>cd02809 alpha_hydroxyacid_oxid_FMN Family of homologous FMN-dependent alpha-hydroxyacid oxidizing enzymes. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO). In green plants, glycolate oxidase is one of the key enzymes in photorespiration where it oxidizes glycolate to glyoxylate. LMO catalyzes the oxidation of L-lactate to acetate and carbon dioxide. MDH oxidizes (S)-mandelate to phenylglyoxalate. It is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate.
Probab=77.90 E-value=6.3 Score=42.53 Aligned_cols=92 Identities=29% Similarity=0.242 Sum_probs=59.8
Q ss_pred HHHHHHHHHhhcCCCeEEeccccchhhhhhhhcCCcEEEEeccccccccCCccccccccccCchHHHHHhhhhhcCCCC-
Q 004491 480 AILSKLKYQIDKGLPIIGAGAGTGISAKFEEAGGVDLIVLYNSGRFRMAGRGSLAGLLPFADANAVVLEMANEVLPVVK- 558 (749)
Q Consensus 480 ~il~~L~~~i~~~~piig~gaGtGlsAk~ae~gGaDli~~ynsGrfR~~G~~SlagllpygdaN~iv~e~~~eilp~v~- 558 (749)
++++.|++++. .|++--+..+--.|+.+++.|+|.|.+-|.|.-.+. .+-++ .+.-.++...++
T Consensus 162 ~~i~~l~~~~~--~pvivK~v~s~~~a~~a~~~G~d~I~v~~~gG~~~~----------~g~~~---~~~l~~i~~~~~~ 226 (299)
T cd02809 162 DDLAWLRSQWK--GPLILKGILTPEDALRAVDAGADGIVVSNHGGRQLD----------GAPAT---IDALPEIVAAVGG 226 (299)
T ss_pred HHHHHHHHhcC--CCEEEeecCCHHHHHHHHHCCCCEEEEcCCCCCCCC----------CCcCH---HHHHHHHHHHhcC
Confidence 67888887664 798877778888999999999999999998742211 12222 223333333333
Q ss_pred CCceEEeeccCCCCCCHHHHHHHHHHcCcccee
Q 004491 559 EVPVLAGVCGTDPFRRVDYFLKQLESIGFFGVQ 591 (749)
Q Consensus 559 ~tPViaGv~atDP~~~~~~~l~~lk~~Gf~GV~ 591 (749)
++|||+-=. .++-....+-|. +|-.||+
T Consensus 227 ~ipvia~GG----I~~~~d~~kal~-lGAd~V~ 254 (299)
T cd02809 227 RIEVLLDGG----IRRGTDVLKALA-LGADAVL 254 (299)
T ss_pred CCeEEEeCC----CCCHHHHHHHHH-cCCCEEE
Confidence 689876432 234456666664 8888775
No 296
>COG1830 FbaB DhnA-type fructose-1,6-bisphosphate aldolase and related enzymes [Carbohydrate transport and metabolism]
Probab=77.71 E-value=11 Score=40.99 Aligned_cols=126 Identities=21% Similarity=0.289 Sum_probs=72.1
Q ss_pred CCCceEEeeccC-----CCCC-CHHHHHHHHHHcCccceecCCcccccchhhhhhhhhcCCchHHHHHHHHHHHHcCCcc
Q 004491 558 KEVPVLAGVCGT-----DPFR-RVDYFLKQLESIGFFGVQNFPTVGLFDGNFRQNLEETGMGYGLEVEMIDKAHKMGLLT 631 (749)
Q Consensus 558 ~~tPViaGv~at-----DP~~-~~~~~l~~lk~~Gf~GV~NfPTvgliDG~fR~~LEe~G~gy~~EVemi~~A~~~gl~T 631 (749)
+|+|+|.=+++. |||- ..-...++...+|-.+|.=.=-+| ..+=++.||+- -+....||+.||.|
T Consensus 76 ~dvplivkl~~~t~l~~~~~~~~~~~~ve~ai~lgadAV~~~Vy~G--se~e~~~i~~~-------~~v~~~a~~~Gmp~ 146 (265)
T COG1830 76 HDVPLIVKLNGSTSLSPDPNDQVLVATVEDAIRLGADAVGATVYVG--SETEREMIENI-------SQVVEDAHELGMPL 146 (265)
T ss_pred CCcCEEEEeccccccCCCcccceeeeeHHHHHhCCCcEEEEEEecC--CcchHHHHHHH-------HHHHHHHHHcCCce
Confidence 378888877766 3321 112234555677777664211000 00112333221 13445799999999
Q ss_pred ccccc------------CHH---HHH-HHHhccCcEEEeccCCCcccccccccccCHHHHHHHHHHHHHHHHHhCCCeEE
Q 004491 632 TPYAF------------NEG---EAV-KMAKAGADIIVAHMGLTTSGSIGAKTALSLDESVDRVQAIADAAHRINPDAIV 695 (749)
Q Consensus 632 ~~yvf------------~~e---qa~-~Ma~AGaDiiv~h~GlT~gG~~Ga~~~~sl~~~~~~~~~i~~aa~~~~pdii~ 695 (749)
+.++| +++ +|. .-++-|||||=...--.. +.|+.+.+..| +-|
T Consensus 147 v~~~YpRg~~~~~~~~~d~~~v~~aaRlaaelGADIiK~~ytg~~--------------------e~F~~vv~~~~-vpV 205 (265)
T COG1830 147 VAWAYPRGPAIKDEYHRDADLVGYAARLAAELGADIIKTKYTGDP--------------------ESFRRVVAACG-VPV 205 (265)
T ss_pred EEEEeccCCcccccccccHHHHHHHHHHHHHhcCCeEeecCCCCh--------------------HHHHHHHHhCC-CCE
Confidence 98543 332 222 446999999855432110 45555566667 789
Q ss_pred EEccCCCC-CHHHHHHHHh
Q 004491 696 LCHGGPIS-SPSEAEFILK 713 (749)
Q Consensus 696 l~hGGPi~-~p~d~~~~l~ 713 (749)
+|-|||=. +++++..+.+
T Consensus 206 viaGG~k~~~~~~~l~~~~ 224 (265)
T COG1830 206 VIAGGPKTETEREFLEMVT 224 (265)
T ss_pred EEeCCCCCCChHHHHHHHH
Confidence 99999988 7778777663
No 297
>TIGR00735 hisF imidazoleglycerol phosphate synthase, cyclase subunit.
Probab=77.65 E-value=57 Score=34.41 Aligned_cols=161 Identities=16% Similarity=0.208 Sum_probs=91.8
Q ss_pred HHHHHHHHHHhhcCCCe-EEeccccchhhhhhhhcCCcEEEEeccccccccCCccccccccccCchHHHHHhhhhhcCCC
Q 004491 479 QAILSKLKYQIDKGLPI-IGAGAGTGISAKFEEAGGVDLIVLYNSGRFRMAGRGSLAGLLPFADANAVVLEMANEVLPVV 557 (749)
Q Consensus 479 ~~il~~L~~~i~~~~pi-ig~gaGtGlsAk~ae~gGaDli~~ynsGrfR~~G~~SlagllpygdaN~iv~e~~~eilp~v 557 (749)
-++++++++.+ +.|+ +|.|..+---++-.-..|||.+++ ++..++- -+++.++.++. |.
T Consensus 63 ~~~i~~i~~~~--~~pv~~~GGi~s~~d~~~~~~~Ga~~viv-gt~~~~~---------------p~~~~~~~~~~-~~- 122 (254)
T TIGR00735 63 IDVVERTAETV--FIPLTVGGGIKSIEDVDKLLRAGADKVSI-NTAAVKN---------------PELIYELADRF-GS- 122 (254)
T ss_pred HHHHHHHHHhc--CCCEEEECCCCCHHHHHHHHHcCCCEEEE-ChhHhhC---------------hHHHHHHHHHc-CC-
Confidence 46777777776 4674 557888888888888899999863 4444431 13444443322 10
Q ss_pred CCCceEEeeccCC-C------------------CCCHHHHHHHHHHcCcccee--cCCcccccchhhhhhhhhcCCchHH
Q 004491 558 KEVPVLAGVCGTD-P------------------FRRVDYFLKQLESIGFFGVQ--NFPTVGLFDGNFRQNLEETGMGYGL 616 (749)
Q Consensus 558 ~~tPViaGv~atD-P------------------~~~~~~~l~~lk~~Gf~GV~--NfPTvgliDG~fR~~LEe~G~gy~~ 616 (749)
--|++.+-..| + -.+...|++++.+.|+..|. ..... | ++-||+.
T Consensus 123 --~~iv~slD~~~g~~~~~~~~~v~i~gw~~~~~~~~~~~~~~l~~~G~~~iivt~i~~~----g--------~~~g~~~ 188 (254)
T TIGR00735 123 --QCIVVAIDAKRVYVNSYCWYEVYIYGGRESTGLDAVEWAKEVEKLGAGEILLTSMDKD----G--------TKSGYDL 188 (254)
T ss_pred --CCEEEEEEeccCCCCCCccEEEEEeCCcccCCCCHHHHHHHHHHcCCCEEEEeCcCcc----c--------CCCCCCH
Confidence 01233332111 1 13567899999999999873 33332 2 2344554
Q ss_pred HH-HHHHHHHHcCCcccccccCHHHHHHHHhcc-CcEEEeccCCCcccccccccccCHHHHHHHHH
Q 004491 617 EV-EMIDKAHKMGLLTTPYAFNEGEAVKMAKAG-ADIIVAHMGLTTSGSIGAKTALSLDESVDRVQ 680 (749)
Q Consensus 617 EV-emi~~A~~~gl~T~~yvf~~eqa~~Ma~AG-aDiiv~h~GlT~gG~~Ga~~~~sl~~~~~~~~ 680 (749)
|. .-++.....-+....=+.+.+++.++.+.| +|-+.+=--+- ....+++++.+..+
T Consensus 189 ~~~~~i~~~~~ipvia~GGi~s~~di~~~~~~g~~dgv~~g~a~~-------~~~~~~~~~~~~~~ 247 (254)
T TIGR00735 189 ELTKAVSEAVKIPVIASGGAGKPEHFYEAFTKGKADAALAASVFH-------YREITIGEVKEYLA 247 (254)
T ss_pred HHHHHHHHhCCCCEEEeCCCCCHHHHHHHHHcCCcceeeEhHHHh-------CCCCCHHHHHHHHH
Confidence 32 333333333444444568999999999988 99864421111 22456776654443
No 298
>PF00834 Ribul_P_3_epim: Ribulose-phosphate 3 epimerase family; InterPro: IPR000056 Ribulose-phosphate 3-epimerase (5.1.3.1 from EC) (also known as pentose-5-phosphate 3-epimerase or PPE) is the enzyme that converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. In Ralstonia eutropha (Alcaligenes eutrophus) two copies of the gene coding for PPE are known [], one is chromosomally encoded P40117 from SWISSPROT, the other one is on a plasmid Q04539 from SWISSPROT. PPE has been found in a wide range of bacteria, archaebacteria, fungi and plants. All the proteins have from 209 to 241 amino acid residues. The enzyme has a TIM barrel structure.; GO: 0004750 ribulose-phosphate 3-epimerase activity, 0005975 carbohydrate metabolic process; PDB: 3CTL_A 3CT7_D 3CU2_A 1RPX_A 3OVR_A 3OVP_A 3OVQ_B 3QC3_B 3INP_A 1TQJ_D ....
Probab=77.62 E-value=7.4 Score=40.17 Aligned_cols=152 Identities=20% Similarity=0.251 Sum_probs=98.8
Q ss_pred EEeeccCCCCCCHHHHHHHHHHcCccceecCCcccccchhhhhhhhhcCCchHHHHHHHHHHHHcCCcccccccCH-HHH
Q 004491 563 LAGVCGTDPFRRVDYFLKQLESIGFFGVQNFPTVGLFDGNFRQNLEETGMGYGLEVEMIDKAHKMGLLTTPYAFNE-GEA 641 (749)
Q Consensus 563 iaGv~atDP~~~~~~~l~~lk~~Gf~GV~NfPTvgliDG~fR~~LEe~G~gy~~EVemi~~A~~~gl~T~~yvf~~-eqa 641 (749)
-..+.+.|+ .++.+-+++|++.|..-+ -+=.+||+|=.|+ ++|. ..|+.||+.-..-+=.==.|-|+ .-.
T Consensus 3 ~pSil~ad~-~~l~~~i~~l~~~g~d~l----HiDiMDg~fvpn~---~~g~-~~i~~i~~~~~~~~DvHLMv~~P~~~i 73 (201)
T PF00834_consen 3 SPSILSADF-LNLEEEIKRLEEAGADWL----HIDIMDGHFVPNL---TFGP-DIIKAIRKITDLPLDVHLMVENPERYI 73 (201)
T ss_dssp EEBGGGS-G-GGHHHHHHHHHHTT-SEE----EEEEEBSSSSSSB----B-H-HHHHHHHTTSSSEEEEEEESSSGGGHH
T ss_pred ehhhhhCCH-HHHHHHHHHHHHcCCCEE----EEeecccccCCcc---cCCH-HHHHHHhhcCCCcEEEEeeeccHHHHH
Confidence 455667774 578889999999996544 4677889998886 3444 34566655421111111134455 457
Q ss_pred HHHHhccCcEEEeccCCCc----------------ccccccccc--------------------------cCHHHHHHHH
Q 004491 642 VKMAKAGADIIVAHMGLTT----------------SGSIGAKTA--------------------------LSLDESVDRV 679 (749)
Q Consensus 642 ~~Ma~AGaDiiv~h~GlT~----------------gG~~Ga~~~--------------------------~sl~~~~~~~ 679 (749)
++++++|||.|+.|.--+. |=.+.-.|. .=++++.+++
T Consensus 74 ~~~~~~g~~~i~~H~E~~~~~~~~i~~ik~~g~k~GialnP~T~~~~~~~~l~~vD~VlvMsV~PG~~Gq~f~~~~~~KI 153 (201)
T PF00834_consen 74 EEFAEAGADYITFHAEATEDPKETIKYIKEAGIKAGIALNPETPVEELEPYLDQVDMVLVMSVEPGFGGQKFIPEVLEKI 153 (201)
T ss_dssp HHHHHHT-SEEEEEGGGTTTHHHHHHHHHHTTSEEEEEE-TTS-GGGGTTTGCCSSEEEEESS-TTTSSB--HGGHHHHH
T ss_pred HHHHhcCCCEEEEcccchhCHHHHHHHHHHhCCCEEEEEECCCCchHHHHHhhhcCEEEEEEecCCCCcccccHHHHHHH
Confidence 7889999999999987443 111111111 2245788999
Q ss_pred HHHHHHHHHhCCCeEEEEccCCCCCHHHHHHHHhhCCCccEEecCccc
Q 004491 680 QAIADAAHRINPDAIVLCHGGPISSPSEAEFILKRTKGVHGFYGASSM 727 (749)
Q Consensus 680 ~~i~~aa~~~~pdii~l~hGGPi~~p~d~~~~l~~~~~~~Gf~g~Ss~ 727 (749)
+++.+...+.+.++.+.+-|| -+.+-+..+.+. +++.|+.||.+
T Consensus 154 ~~l~~~~~~~~~~~~I~vDGG--I~~~~~~~~~~a--Gad~~V~Gs~i 197 (201)
T PF00834_consen 154 RELRKLIPENGLDFEIEVDGG--INEENIKQLVEA--GADIFVAGSAI 197 (201)
T ss_dssp HHHHHHHHHHTCGSEEEEESS--ESTTTHHHHHHH--T--EEEESHHH
T ss_pred HHHHHHHHhcCCceEEEEECC--CCHHHHHHHHHc--CCCEEEECHHH
Confidence 999999999999999999999 677788888744 78999999864
No 299
>PF01180 DHO_dh: Dihydroorotate dehydrogenase; InterPro: IPR012135 Dihydroorotate dehydrogenase (DHOD), also known as dihydroorotate oxidase, catalyses the fourth step in de novo pyrimidine biosynthesis, the stereospecific oxidation of (S)-dihydroorotate to orotate, which is the only redox reaction in this pathway. DHODs can be divided into two mains classes: class 1 cytosolic enzymes found primarily in Gram-positive bacteria, and class 2 membrane-associated enzymes found primarily in eukaryotic mitochondria and Gram-negative bacteria []. The class 1 DHODs can be further divided into subclasses 1A and 1B, which differ in their structural organisation and use of electron acceptors. The 1A enzyme is a homodimer of two PyrD subunits where each subunit forms a TIM barrel fold with a bound FMN cofactor located near the top of the barrel []. Fumarate is the natural electron acceptor for this enzyme. The 1B enzyme, in contrast is a heterotetramer composed of a central, FMN-containing, PyrD homodimer resembling the 1A homodimer, and two additional PyrK subunits which contain FAD and a 2Fe-2S cluster []. These additional groups allow the enzyme to use NAD(+) as its natural electron acceptor. The class 2 membrane-associated enzymes are monomers which have the FMN-containing TIM barrel domain found in the class 1 PyrD subunit, and an additional N-terminal alpha helical domain [, ]. These enzymes use respiratory quinones as the physiological electron acceptor. This entry represents the FMN-binding subunit common to all classes of dihydroorotate dehydrogenase.; GO: 0004152 dihydroorotate dehydrogenase activity, 0006222 UMP biosynthetic process, 0055114 oxidation-reduction process; PDB: 3GYE_A 3GZ3_A 3MHU_B 3MJY_A 3TQ0_A 2B4G_C 1EP3_A 1EP2_A 1EP1_A 3I6R_A ....
Probab=77.58 E-value=13 Score=39.75 Aligned_cols=189 Identities=19% Similarity=0.193 Sum_probs=89.6
Q ss_pred hhcCCcEEEEeccccccccCCcc---------ccccccccCchHHHHHhhhhhcCCC------CCCceEEeeccCCCCCC
Q 004491 510 EAGGVDLIVLYNSGRFRMAGRGS---------LAGLLPFADANAVVLEMANEVLPVV------KEVPVLAGVCGTDPFRR 574 (749)
Q Consensus 510 e~gGaDli~~ynsGrfR~~G~~S---------lagllpygdaN~iv~e~~~eilp~v------~~tPViaGv~atDP~~~ 574 (749)
.+.|+.+|++-.--.-...|... .+-+=.||-.|.=.-...+++.+.. .++||++.+++.+ ...
T Consensus 32 ~~~G~Gavv~ksvt~~~~~gn~~pr~~~~~~~~~~~n~~G~~n~g~~~~~~~~~~~~~~~~~~~~~pvi~Si~~~~-~~~ 110 (295)
T PF01180_consen 32 FDAGFGAVVTKSVTPEPREGNPEPRIFRLPEGESILNSMGLPNPGLEYYLERLRPILKEAKKDVDIPVIASINGDS-EEE 110 (295)
T ss_dssp HHHSSSEEEEEEE-SSGB--SSSS-EEEETTETEEEE---S-BSHHHHHHHHHHHTHHHTTCH-CEEEEEEE-TSS-SGH
T ss_pred hcCCccEEEeccccccccccccCCcEEeeccccccccccCCChHHHHHHHHHHHHHhhhcccccceeEEEEeecCC-chh
Confidence 34559999986443322223221 1112234445544444444444443 2589999999987 445
Q ss_pred HHHHHHHHHH--cCccce-ecC--CcccccchhhhhhhhhcCCchHHHHHHHHHHHHc-CC----cccccccCHH---HH
Q 004491 575 VDYFLKQLES--IGFFGV-QNF--PTVGLFDGNFRQNLEETGMGYGLEVEMIDKAHKM-GL----LTTPYAFNEG---EA 641 (749)
Q Consensus 575 ~~~~l~~lk~--~Gf~GV-~Nf--PTvgliDG~fR~~LEe~G~gy~~EVemi~~A~~~-gl----~T~~yvf~~e---qa 641 (749)
.++|.+..++ .|...+ .|+ |-+. -...+.+. .+...++.+..++. ++ =-.|++.+.+ .+
T Consensus 111 ~~d~~~~a~~~~~~ad~lElN~ScPn~~-~~~~~~~~-------~~~~~~i~~~v~~~~~~Pv~vKL~p~~~~~~~~~~~ 182 (295)
T PF01180_consen 111 IEDWAELAKRLEAGADALELNLSCPNVP-GGRPFGQD-------PELVAEIVRAVREAVDIPVFVKLSPNFTDIEPFAIA 182 (295)
T ss_dssp HHHHHHHHHHHHHHCSEEEEESTSTTST-TSGGGGGH-------HHHHHHHHHHHHHHHSSEEEEEE-STSSCHHHHHHH
T ss_pred HHHHHHHHHHhcCcCCceEEEeeccCCC-CccccccC-------HHHHHHHHHHHHhccCCCEEEEecCCCCchHHHHHH
Confidence 5666655555 344333 265 6554 11222221 22222333333332 11 1234566654 35
Q ss_pred HHHHhccCcEEE----eccCC-------------CcccccccccccCHHHHHHHHHHHHHHHHHhCCCeEEEEccCCCCC
Q 004491 642 VKMAKAGADIIV----AHMGL-------------TTSGSIGAKTALSLDESVDRVQAIADAAHRINPDAIVLCHGGPISS 704 (749)
Q Consensus 642 ~~Ma~AGaDiiv----~h~Gl-------------T~gG~~Ga~~~~sl~~~~~~~~~i~~aa~~~~pdii~l~hGGPi~~ 704 (749)
.+..+.|+|-|+ .-.+. ..||.-|.. -..-+.+.+.++ .+..++++-+..- |-|.+
T Consensus 183 ~~~~~~g~~gi~~~Nt~~~~~~id~~~~~~~~~~~~gGlSG~~---i~p~aL~~V~~~---~~~~~~~i~Iig~-GGI~s 255 (295)
T PF01180_consen 183 AELAADGADGIVAINTFGQGDAIDLETRRPVLGNGFGGLSGPA---IRPIALRWVREL---RKALGQDIPIIGV-GGIHS 255 (295)
T ss_dssp HHHHTHTECEEEE---EEEEE-EETTTTEESSSGGEEEEEEGG---GHHHHHHHHHHH---HHHTTTSSEEEEE-SS--S
T ss_pred HHhhccceeEEEEecCccCcccccchhcceeeccccCCcCchh---hhhHHHHHHHHH---HhccccceEEEEe-CCcCC
Confidence 555688999888 21111 223333321 123345444444 4455556555544 55999
Q ss_pred HHHHHHHHhh
Q 004491 705 PSEAEFILKR 714 (749)
Q Consensus 705 p~d~~~~l~~ 714 (749)
++|+..++..
T Consensus 256 ~~da~e~l~a 265 (295)
T PF01180_consen 256 GEDAIEFLMA 265 (295)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 9999999865
No 300
>PRK12655 fructose-6-phosphate aldolase; Reviewed
Probab=77.52 E-value=9.2 Score=40.20 Aligned_cols=116 Identities=20% Similarity=0.306 Sum_probs=80.8
Q ss_pred HHHHHHHHHcCCcccc-cccCHHHHHHHHhccCcEEEeccCCCcccccccccccCHHHHHHHHHHHHHHHHHhCCCeEEE
Q 004491 618 VEMIDKAHKMGLLTTP-YAFNEGEAVKMAKAGADIIVAHMGLTTSGSIGAKTALSLDESVDRVQAIADAAHRINPDAIVL 696 (749)
Q Consensus 618 Vemi~~A~~~gl~T~~-yvf~~eqa~~Ma~AGaDiiv~h~GlT~gG~~Ga~~~~sl~~~~~~~~~i~~aa~~~~pdii~l 696 (749)
++.++.-++.|+-|.. -||+.+||..-++|||+.|.+.+|.-.- .| .+.++.+++|.+..+..+++.-+|
T Consensus 93 l~Ai~~L~~~GI~vn~T~vfs~~Qa~~Aa~aGa~yIspyvgR~~~--~g-------~dg~~~i~~~~~~~~~~~~~tkIL 163 (220)
T PRK12655 93 LAAIKKLKKEGIPTLGTAVYSAAQGLLAALAGAKYVAPYVNRVDA--QG-------GDGIRMVQELQTLLEMHAPESMVL 163 (220)
T ss_pred HHHHHHHHHCCCceeEeEecCHHHHHHHHHcCCeEEEeecchHhH--cC-------CCHHHHHHHHHHHHHhcCCCcEEE
Confidence 7888888899987764 5999999988889999999999996531 12 245777788888888878888888
Q ss_pred EccCCCCCHHHHHHHHhhCCCccEE-ecCcccccc----hHHHHHHHHHHhhccc
Q 004491 697 CHGGPISSPSEAEFILKRTKGVHGF-YGASSMERL----PVEQAITSTMRQYKSI 746 (749)
Q Consensus 697 ~hGGPi~~p~d~~~~l~~~~~~~Gf-~g~Ss~ERl----P~E~ai~~~~~~FK~~ 746 (749)
+.-+.+|+++...+. .++|-. +.-.-++.+ -++.++.+-.+.|+++
T Consensus 164 --aAS~r~~~~v~~~~~--~G~d~vTip~~vl~~l~~~p~t~~~~~~F~~dw~~~ 214 (220)
T PRK12655 164 --AASFKTPRQALDCLL--AGCQSITLPLDVAQQMLNTPAVESAIEKFEQDWQAA 214 (220)
T ss_pred --EEecCCHHHHHHHHH--cCCCEEECCHHHHHHHHcCCChHHHHHHHHHHHHHh
Confidence 446778888887664 355544 222333332 2556666555555543
No 301
>cd04735 OYE_like_4_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 4. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=77.45 E-value=10 Score=41.90 Aligned_cols=154 Identities=14% Similarity=0.130 Sum_probs=84.6
Q ss_pred cccHHHHHHHHHHHhhcCCCeEEeccccchhhhhhhhcCCcEEEEecc----------ccc--cccC-CccccccccccC
Q 004491 475 LQRTQAILSKLKYQIDKGLPIIGAGAGTGISAKFEEAGGVDLIVLYNS----------GRF--RMAG-RGSLAGLLPFAD 541 (749)
Q Consensus 475 ~~~r~~il~~L~~~i~~~~piig~gaGtGlsAk~ae~gGaDli~~yns----------Grf--R~~G-~~Slagllpygd 541 (749)
-||.+||-+-.++-. -+||.|.++|.|.|=+.-. -.+ |..- -||+ -|
T Consensus 133 ~mt~~eI~~ii~~f~--------------~aA~~a~~aGfDgVeih~ahGyLl~qFlsp~~N~R~D~yGGsl------en 192 (353)
T cd04735 133 ELTHEEIEDIIDAFG--------------EATRRAIEAGFDGVEIHGANGYLIQQFFSPHSNRRTDEWGGSL------EN 192 (353)
T ss_pred cCCHHHHHHHHHHHH--------------HHHHHHHHcCCCEEEEccccchHHHHhcCCccCCCCcccCCcH------HH
Confidence 478888875554433 5799999999999987521 111 2111 1221 12
Q ss_pred chHHHHHhhhhhcCCC-----CCCceEEeeccCCCC------CCHHHHHHHHHHcCccceecCCcccccchhhhhhhhhc
Q 004491 542 ANAVVLEMANEVLPVV-----KEVPVLAGVCGTDPF------RRVDYFLKQLESIGFFGVQNFPTVGLFDGNFRQNLEET 610 (749)
Q Consensus 542 aN~iv~e~~~eilp~v-----~~tPViaGv~atDP~------~~~~~~l~~lk~~Gf~GV~NfPTvgliDG~fR~~LEe~ 610 (749)
-=.+++|..++|--.| ++.||-.=+++.|.+ -+.-.+++.|.+.|+.=|.= +.+..... ... .
T Consensus 193 R~r~~~eii~~vr~~vg~~~~~~~~v~~R~s~~~~~~~g~~~ee~~~i~~~L~~~GvD~I~V--s~g~~~~~--~~~--~ 266 (353)
T cd04735 193 RMRFPLAVVKAVQEVIDKHADKDFILGYRFSPEEPEEPGIRMEDTLALVDKLADKGLDYLHI--SLWDFDRK--SRR--G 266 (353)
T ss_pred HHHHHHHHHHHHHHHhccccCCCceEEEEECcccccCCCCCHHHHHHHHHHHHHcCCCEEEe--ccCccccc--ccc--C
Confidence 2234455544333333 366776667776642 34557788999988543320 00000000 000 0
Q ss_pred CCchHHHHHHHHHHH--HcCCcccccccCHHHHHHHHhccCcEEEe
Q 004491 611 GMGYGLEVEMIDKAH--KMGLLTTPYAFNEGEAVKMAKAGADIIVA 654 (749)
Q Consensus 611 G~gy~~EVemi~~A~--~~gl~T~~yvf~~eqa~~Ma~AGaDiiv~ 654 (749)
+.....-++.|+++. ..=++...-++++++|.++.+.|+|.+..
T Consensus 267 ~~~~~~~~~~ik~~~~~~iPVi~~Ggi~t~e~ae~~l~~gaD~V~~ 312 (353)
T cd04735 267 RDDNQTIMELVKERIAGRLPLIAVGSINTPDDALEALETGADLVAI 312 (353)
T ss_pred CcchHHHHHHHHHHhCCCCCEEEECCCCCHHHHHHHHHcCCChHHH
Confidence 011122234456654 33467777889999999999889997643
No 302
>TIGR00715 precor6x_red precorrin-6x reductase. This enzyme was found to be a monomer by gel filtration.
Probab=77.45 E-value=6.5 Score=42.05 Aligned_cols=76 Identities=21% Similarity=0.235 Sum_probs=53.2
Q ss_pred ccCCchHHHHHHHHHHHhcCccEEEEe------------------cCCCchHHHHHHHHcCCceEEEeCchhhhhhhhhC
Q 004491 216 MFGVTTPCVNAVKERLEKEGYETMVFH------------------ATGVGGRAMEALVKEGFIQGVLDITTTEVADYVVG 277 (749)
Q Consensus 216 MFGvTTp~V~~~r~~Le~~GyEvlVFH------------------ATG~GGrAME~Li~eG~~~gVlDlTttElaD~l~G 277 (749)
.||=|+- ..++-++|.+.||+|++-= ..+.++..|+.++++..++.|+|-|. -.|.++--
T Consensus 5 vlGGT~e-gr~la~~L~~~g~~v~~s~~t~~~~~~~~~~g~~~v~~g~l~~~~l~~~l~~~~i~~VIDAtH-PfA~~is~ 82 (256)
T TIGR00715 5 LMGGTVD-SRAIAKGLIAQGIEILVTVTTSEGKHLYPIHQALTVHTGALDPQELREFLKRHSIDILVDATH-PFAAQITT 82 (256)
T ss_pred EEechHH-HHHHHHHHHhCCCeEEEEEccCCccccccccCCceEEECCCCHHHHHHHHHhcCCCEEEEcCC-HHHHHHHH
Confidence 3566665 5566666666677776543 34455678999999999999999876 55555433
Q ss_pred CccCCCCchhhhhhhcCCCeEEe
Q 004491 278 GVMACDSSRFDATIEKKIPLVLS 300 (749)
Q Consensus 278 Gv~saGp~RL~AA~~~GIPqVVs 300 (749)
- =.+|+.+.|||++=.
T Consensus 83 ~-------a~~a~~~~~ipylR~ 98 (256)
T TIGR00715 83 N-------ATAVCKELGIPYVRF 98 (256)
T ss_pred H-------HHHHHHHhCCcEEEE
Confidence 2 247889999999865
No 303
>PF13407 Peripla_BP_4: Periplasmic binding protein domain; PDB: 3BRS_B 3GBP_A 3GA5_A 1GCG_A 1GCA_A 3H75_A 3D02_A 3L49_B 3EJW_B 3T95_A ....
Probab=77.38 E-value=84 Score=31.63 Aligned_cols=169 Identities=18% Similarity=0.276 Sum_probs=91.6
Q ss_pred EEEeccCCchH----HHHHHHHHHHhcCccEEE-EecCCCc---hHHHHHHHHcCCceEEEeCchhhhhhhhhCCccCCC
Q 004491 212 VGITMFGVTTP----CVNAVKERLEKEGYETMV-FHATGVG---GRAMEALVKEGFIQGVLDITTTEVADYVVGGVMACD 283 (749)
Q Consensus 212 IgiTMFGvTTp----~V~~~r~~Le~~GyEvlV-FHATG~G---GrAME~Li~eG~~~gVlDlTttElaD~l~GGv~saG 283 (749)
||+.+.....| ..+.+++.+++.|+++.+ |.+.+.. -..+|+++.+| +||++ +++..- ...
T Consensus 1 I~vi~~~~~~~~~~~~~~g~~~~a~~~g~~~~~~~~~~~d~~~q~~~i~~~i~~~-~d~Ii-v~~~~~---------~~~ 69 (257)
T PF13407_consen 1 IGVIVPSMDNPFWQQVIKGAKAAAKELGYEVEIVFDAQNDPEEQIEQIEQAISQG-VDGII-VSPVDP---------DSL 69 (257)
T ss_dssp EEEEESSSSSHHHHHHHHHHHHHHHHHTCEEEEEEESTTTHHHHHHHHHHHHHTT-ESEEE-EESSST---------TTT
T ss_pred cEEEeCCCCCHHHHHHHHHHHHHHHHcCCEEEEeCCCCCCHHHHHHHHHHHHHhc-CCEEE-ecCCCH---------HHH
Confidence 45555555554 445667777788999999 5777664 24577888778 99988 433211 112
Q ss_pred CchhhhhhhcCCCeEEecCccccccCCCCCCCCccccCCceeeecCcceEEecCHHHH-HHHHHHHHHHHccCCCCeEEE
Q 004491 284 SSRFDATIEKKIPLVLSVGALDMVNFGAKDTIPSKFQRRKIHVHNQQVSLMRTTVDEN-KKFAAFIANKLNQSSSKIRLC 362 (749)
Q Consensus 284 p~RL~AA~~~GIPqVVspGalDmVnFG~~dtvPe~f~~R~~~~HNp~vTlmRTt~eE~-~~ig~~iA~kLn~a~gpv~vl 362 (749)
.+=|+.+.++|||.|.. |.- -..+.+....+-++..+. +.+|+++++++... +++.++
T Consensus 70 ~~~l~~~~~~gIpvv~~----d~~----------------~~~~~~~~~~v~~d~~~~G~~~a~~l~~~~~~~-~~v~~~ 128 (257)
T PF13407_consen 70 APFLEKAKAAGIPVVTV----DSD----------------EAPDSPRAAYVGTDNYEAGKLAAEYLAEKLGAK-GKVLIL 128 (257)
T ss_dssp HHHHHHHHHTTSEEEEE----SST----------------HHTTSTSSEEEEE-HHHHHHHHHHHHHHHHTTT-EEEEEE
T ss_pred HHHHHHHhhcCceEEEE----ecc----------------ccccccceeeeeccHHHHHHHHHHHHHHHhccC-ceEEec
Confidence 23477788999998872 111 111223445667766665 55666666666655 333333
Q ss_pred eeCCCCcccCCCCCCCCChhhhHHHHHHHHHhcccCCCceEEe-cCCCCCCHHHHHHHHHHHHH
Q 004491 363 LPQNGISALDAPGKPFYDPEATGTLISELRTLIQTNEDRQVKV-YPHNINDSEFADALVDSFLE 425 (749)
Q Consensus 363 lP~~G~S~lD~~G~pf~DPeAd~al~~~L~~~l~~~~~~~v~~-~d~hINDp~FA~a~a~~l~~ 425 (749)
-...+.+ ..-+.-+.|.+.|++ .+..++.. +..-=+|++=+....+.+++
T Consensus 129 ~~~~~~~---------~~~~r~~g~~~~l~~----~~~~~~~~~~~~~~~~~~~a~~~~~~~l~ 179 (257)
T PF13407_consen 129 SGSPGNP---------NTQERLEGFRDALKE----YPGVEIVDEYEYTDWDPEDARQAIENLLQ 179 (257)
T ss_dssp ESSTTSH---------HHHHHHHHHHHHHHH----CTTEEEEEEEEECTTSHHHHHHHHHHHHH
T ss_pred cCCCCch---------HHHHHHHHHHHHHhh----cceeeeeeeeeccCCCHHHHHHHHHHhhh
Confidence 1111110 011233455555555 23344443 11223666666666655554
No 304
>PRK13209 L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=77.37 E-value=51 Score=34.56 Aligned_cols=130 Identities=12% Similarity=0.012 Sum_probs=71.6
Q ss_pred CCHHHHHHHHHHcCccceecCCcccccchhhhhhhhhcCCch-HHHHHHHH-HHHHcCCcccc--------c--cc-CHH
Q 004491 573 RRVDYFLKQLESIGFFGVQNFPTVGLFDGNFRQNLEETGMGY-GLEVEMID-KAHKMGLLTTP--------Y--AF-NEG 639 (749)
Q Consensus 573 ~~~~~~l~~lk~~Gf~GV~NfPTvgliDG~fR~~LEe~G~gy-~~EVemi~-~A~~~gl~T~~--------y--vf-~~e 639 (749)
+++++.++.++++||.||.=++.- .+ ..+ ..+++ ..+++.|+ .+++.||--.+ | .. +++
T Consensus 21 ~~~~e~~~~~~~~G~~~iEl~~~~--~~----~~~--~~~~~~~~~~~~l~~~l~~~gl~i~~~~~~~~~~~~~~~~~~~ 92 (283)
T PRK13209 21 ECWLEKLAIAKTAGFDFVEMSVDE--SD----ERL--ARLDWSREQRLALVNALVETGFRVNSMCLSAHRRFPLGSEDDA 92 (283)
T ss_pred CCHHHHHHHHHHcCCCeEEEecCc--cc----cch--hccCCCHHHHHHHHHHHHHcCCceeEEecccccccCCCCCCHH
Confidence 478999999999999999854311 00 001 11222 22343333 33355553211 1 11 111
Q ss_pred ----------HH-HHHHhccCcEEEeccCCCcccccccccccCHHHHHHHHHHHHHHHHHhCCCeEEEE--cc-CCCCCH
Q 004491 640 ----------EA-VKMAKAGADIIVAHMGLTTSGSIGAKTALSLDESVDRVQAIADAAHRINPDAIVLC--HG-GPISSP 705 (749)
Q Consensus 640 ----------qa-~~Ma~AGaDiiv~h~GlT~gG~~Ga~~~~sl~~~~~~~~~i~~aa~~~~pdii~l~--hG-GPi~~p 705 (749)
++ +...+.|+..|+.|-+ +. ..+.....+.+..++..+++.+.|.+.+ |.+.. |. -.+.++
T Consensus 93 ~r~~~~~~~~~~i~~a~~lG~~~i~~~~~-~~--~~~~~~~~~~~~~~~~l~~l~~~A~~~G--V~i~iE~~~~~~~~~~ 167 (283)
T PRK13209 93 VRAQALEIMRKAIQLAQDLGIRVIQLAGY-DV--YYEQANNETRRRFIDGLKESVELASRAS--VTLAFEIMDTPFMNSI 167 (283)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCEEEECCc-cc--cccccHHHHHHHHHHHHHHHHHHHHHhC--CEEEEeecCCcccCCH
Confidence 12 3345889999987621 11 0112223344555777788888887655 44444 33 456799
Q ss_pred HHHHHHHhhC
Q 004491 706 SEAEFILKRT 715 (749)
Q Consensus 706 ~d~~~~l~~~ 715 (749)
+++..+++..
T Consensus 168 ~~~~~ll~~v 177 (283)
T PRK13209 168 SKALGYAHYL 177 (283)
T ss_pred HHHHHHHHHh
Confidence 9999999764
No 305
>cd02931 ER_like_FMN Enoate reductase (ER)-like FMN-binding domain. Enoate reductase catalyzes the NADH-dependent reduction of carbon-carbon double bonds of several molecules, including nonactivated 2-enoates, alpha,beta-unsaturated aldehydes, cyclic ketones, and methylketones. ERs are similar to 2,4-dienoyl-CoA reductase from E. coli and to the old yellow enzyme from Saccharomyces cerevisiae.
Probab=77.35 E-value=28 Score=39.10 Aligned_cols=171 Identities=16% Similarity=0.175 Sum_probs=96.5
Q ss_pred ccCCCCCCCCC----CcccccHHHHHHHHHHHhhcCCCeEEeccccchhhhhhhhcCCcEEEEecc--ccc---------
Q 004491 461 CYSPSNFPDAR----PETLQRTQAILSKLKYQIDKGLPIIGAGAGTGISAKFEEAGGVDLIVLYNS--GRF--------- 525 (749)
Q Consensus 461 ~~~~~~~~~~~----~~~~~~r~~il~~L~~~i~~~~piig~gaGtGlsAk~ae~gGaDli~~yns--Grf--------- 525 (749)
.++||..|... .-.-||.+||.+-.++-+ -.|+.|.++|.|-|=+..+ |-+
T Consensus 121 ~~~ps~~~~~~~~~~~p~~mt~~eI~~ii~~f~--------------~AA~ra~~AGfDgVEih~ah~GyLl~qFLSp~~ 186 (382)
T cd02931 121 PVAPSPIPNRWLPEITCRELTTEEVETFVGKFG--------------ESAVIAKEAGFDGVEIHAVHEGYLLDQFTISLF 186 (382)
T ss_pred ccCCCCCCCCcCCCCCCCcCCHHHHHHHHHHHH--------------HHHHHHHHcCCCEEEEeccccChHHHHhcCCcc
Confidence 35555554321 114588999887666554 4799999999999987753 321
Q ss_pred --cccCCccccccccccCchHHHHHhhhhhcCCC-CCCceEEeeccCCCCC--------------------CHHHHHHHH
Q 004491 526 --RMAGRGSLAGLLPFADANAVVLEMANEVLPVV-KEVPVLAGVCGTDPFR--------------------RVDYFLKQL 582 (749)
Q Consensus 526 --R~~G~~SlagllpygdaN~iv~e~~~eilp~v-~~tPViaGv~atDP~~--------------------~~~~~l~~l 582 (749)
|-. . +.| .+-|-=.+++|..++|--.+ ++.||-.=++..|.+. +.-.+++.|
T Consensus 187 N~RtD-e--yGG--slenR~rf~~eii~~vr~~~g~~f~v~vri~~~~~~~~~~~~~~~~~~~~~~g~~~e~~~~~~~~l 261 (382)
T cd02931 187 NKRTD-K--YGG--SLENRLRFAIEIVEEIKARCGEDFPVSLRYSVKSYIKDLRQGALPGEEFQEKGRDLEEGLKAAKIL 261 (382)
T ss_pred CCCCC-c--CCC--CHHHHhHHHHHHHHHHHHhcCCCceEEEEEechhhccccccccccccccccCCCCHHHHHHHHHHH
Confidence 111 0 001 01122244555554444344 3567777677654321 233678888
Q ss_pred HHcCccceecCCcccccchhh---hhhhhhcCCchH-HHHHHHHHHHHcCCcccccccCHHHHHHHHhcc-CcEEEe
Q 004491 583 ESIGFFGVQNFPTVGLFDGNF---RQNLEETGMGYG-LEVEMIDKAHKMGLLTTPYAFNEGEAVKMAKAG-ADIIVA 654 (749)
Q Consensus 583 k~~Gf~GV~NfPTvgliDG~f---R~~LEe~G~gy~-~EVemi~~A~~~gl~T~~yvf~~eqa~~Ma~AG-aDiiv~ 654 (749)
.+.|..=|. .+.|..+..+ ....... ||. ..++-|+++-..=++....++++++++++.+.| +|.+-.
T Consensus 262 ~~~gvD~l~--vs~g~~~~~~~~~~~~~~~~--~~~~~~~~~ik~~~~~pvi~~G~i~~~~~~~~~l~~g~~D~V~~ 334 (382)
T cd02931 262 EEAGYDALD--VDAGSYDAWYWNHPPMYQKK--GMYLPYCKALKEVVDVPVIMAGRMEDPELASEAINEGIADMISL 334 (382)
T ss_pred HHhCCCEEE--eCCCCCcccccccCCccCCc--chhHHHHHHHHHHCCCCEEEeCCCCCHHHHHHHHHcCCCCeeee
Confidence 888854332 1222111000 0011112 232 345667777666788888999999999999876 898754
No 306
>PLN02540 methylenetetrahydrofolate reductase
Probab=76.96 E-value=53 Score=39.26 Aligned_cols=158 Identities=17% Similarity=0.242 Sum_probs=95.9
Q ss_pred HHHHHhhhhhcCCCCCCceEEeeccCC-CCCCHHHHHHHHHHcCccceecC------CcccccchhhhhhhhhcCCchHH
Q 004491 544 AVVLEMANEVLPVVKEVPVLAGVCGTD-PFRRVDYFLKQLESIGFFGVQNF------PTVGLFDGNFRQNLEETGMGYGL 616 (749)
Q Consensus 544 ~iv~e~~~eilp~v~~tPViaGv~atD-P~~~~~~~l~~lk~~Gf~GV~Nf------PTvgliDG~fR~~LEe~G~gy~~ 616 (749)
+..+++++.+.-.+. +|++.=+.++| +-..++..|.++++.| |.|. |.-+ |. ..+..--+|..
T Consensus 44 ~~Tl~la~~lq~~~G-ie~i~HLTCrd~n~~~L~~~L~~a~~~G---IrNILALrGDpp~~---~d---~~~~~~g~F~~ 113 (565)
T PLN02540 44 DLTLDIANRMQNMIC-VETMMHLTCTNMPVEKIDHALETIKSNG---IQNILALRGDPPHG---QD---KFVQVEGGFAC 113 (565)
T ss_pred HHHHHHHHHHHHhcC-CCeeEEeeecCCCHHHHHHHHHHHHHCC---CCEEEEECCCCCCC---CC---CcCCCCCCccc
Confidence 447777766655543 67788888888 4445677777777766 5665 3321 21 11122236777
Q ss_pred HHHHHHHHHHc--CCcccccc---------cCH----------HHHHH---HHhccCcEEEeccCCCcccccccccccCH
Q 004491 617 EVEMIDKAHKM--GLLTTPYA---------FNE----------GEAVK---MAKAGADIIVAHMGLTTSGSIGAKTALSL 672 (749)
Q Consensus 617 EVemi~~A~~~--gl~T~~yv---------f~~----------eqa~~---Ma~AGaDiiv~h~GlT~gG~~Ga~~~~sl 672 (749)
=+++|+..+++ +.|.+..+ ++. +|... -.+||||-|+..+-.. .
T Consensus 114 A~dLV~~Ir~~~gd~f~IgVAGYPEgHpe~~~~~~~~~~~~~~~dl~~Lk~KvdAGAdFiITQlfFD------------~ 181 (565)
T PLN02540 114 ALDLVKHIRSKYGDYFGITVAGYPEAHPDVIGGDGLATPEAYQKDLAYLKEKVDAGADLIITQLFYD------------T 181 (565)
T ss_pred HHHHHHHHHHhCCCCceEEEeCCCCCCCcccccccccCCCChHHHHHHHHHHHHcCCCEEeeccccC------------H
Confidence 78889998886 24444333 111 23343 3689999999887643 2
Q ss_pred HHHHHHHHHHHHHHHHhCCCeEEEEccCCCCCHHHHHHHHhhCCCccEEecCcccccc
Q 004491 673 DESVDRVQAIADAAHRINPDAIVLCHGGPISSPSEAEFILKRTKGVHGFYGASSMERL 730 (749)
Q Consensus 673 ~~~~~~~~~i~~aa~~~~pdii~l~hGGPi~~p~d~~~~l~~~~~~~Gf~g~Ss~ERl 730 (749)
+...+..+.|++...++-++.-=-||.+...++++-+ .+++ -+-.+-+|||
T Consensus 182 ----d~f~~f~~~~r~~Gi~vPIipGImPI~S~k~l~r~~~-l~Gi--~IP~~i~~rL 232 (565)
T PLN02540 182 ----DIFLKFVNDCRQIGITCPIVPGIMPINNYKGFLRMTG-FCKT--KIPAEITAAL 232 (565)
T ss_pred ----HHHHHHHHHHHhcCCCCCEEeeecccCCHHHHHHHHh-ccCC--cCCHHHHHHH
Confidence 3334666777777666666655569999999988875 3443 3344444444
No 307
>PRK07107 inosine 5-monophosphate dehydrogenase; Validated
Probab=76.93 E-value=20 Score=41.99 Aligned_cols=132 Identities=18% Similarity=0.145 Sum_probs=75.2
Q ss_pred CCCCceEEeeccCCCCCCHHHHHHHHHHcCccceecCCcccccchhhhhhhhhcCCchHHHHHHHHHHHHc-C--C-ccc
Q 004491 557 VKEVPVLAGVCGTDPFRRVDYFLKQLESIGFFGVQNFPTVGLFDGNFRQNLEETGMGYGLEVEMIDKAHKM-G--L-LTT 632 (749)
Q Consensus 557 v~~tPViaGv~atDP~~~~~~~l~~lk~~Gf~GV~NfPTvgliDG~fR~~LEe~G~gy~~EVemi~~A~~~-g--l-~T~ 632 (749)
.++.-|.+++... +.....+.|.+.|+.=|. .+ .-.|.=+ .-+++|++.++. + + .-.
T Consensus 229 ~grL~V~~av~~~----~~~~ra~~Lv~aGvd~i~-vd---~a~g~~~-----------~~~~~i~~ir~~~~~~~~V~a 289 (502)
T PRK07107 229 SKRYVVGAGINTR----DYAERVPALVEAGADVLC-ID---SSEGYSE-----------WQKRTLDWIREKYGDSVKVGA 289 (502)
T ss_pred ccCeeeeeccChh----hHHHHHHHHHHhCCCeEe-ec---CcccccH-----------HHHHHHHHHHHhCCCCceEEe
Confidence 3455577777432 345678888888876654 11 1112111 115677776663 2 2 233
Q ss_pred ccccCHHHHHHHHhccCcEEEeccCCCcccccccccccCHHHHHHHH---HHHHHHH----HHhCCCeEEEEccCCCCCH
Q 004491 633 PYAFNEGEAVKMAKAGADIIVAHMGLTTSGSIGAKTALSLDESVDRV---QAIADAA----HRINPDAIVLCHGGPISSP 705 (749)
Q Consensus 633 ~yvf~~eqa~~Ma~AGaDiiv~h~GlT~gG~~Ga~~~~sl~~~~~~~---~~i~~aa----~~~~pdii~l~hGGPi~~p 705 (749)
+-|.+.|+|+.+.+||||.|.+-+| +|++=... ..+.-..-.+ .++++++ ++.+.++-|++.|| |...
T Consensus 290 GnV~t~e~a~~li~aGAd~I~vg~g---~Gs~c~tr-~~~~~g~~~~~ai~~~~~a~~~~~~~~g~~~~viadgG-ir~~ 364 (502)
T PRK07107 290 GNVVDREGFRYLAEAGADFVKVGIG---GGSICITR-EQKGIGRGQATALIEVAKARDEYFEETGVYIPICSDGG-IVYD 364 (502)
T ss_pred ccccCHHHHHHHHHcCCCEEEECCC---CCcCcccc-cccCCCccHHHHHHHHHHHHHHHHhhcCCcceEEEcCC-CCch
Confidence 4599999999999999999987555 55332221 0011111111 2222222 33455677888887 7888
Q ss_pred HHHHHHH
Q 004491 706 SEAEFIL 712 (749)
Q Consensus 706 ~d~~~~l 712 (749)
-|+-.-|
T Consensus 365 gdi~KAl 371 (502)
T PRK07107 365 YHMTLAL 371 (502)
T ss_pred hHHHHHH
Confidence 8876665
No 308
>TIGR01306 GMP_reduct_2 guanosine monophosphate reductase, bacterial. A deep split separates two families of GMP reductase. The other (TIGR01305) is found in eukaryotic and some proteobacterial lineages, including E. coli, while this family is found in a variety of bacterial lineages.
Probab=76.79 E-value=13 Score=41.17 Aligned_cols=132 Identities=19% Similarity=0.194 Sum_probs=77.0
Q ss_pred CceEEeeccCCCCCCHHHHHHHHHHcCccceecCCcccccc---hhhhhhhhhcCCchHHHHHHHHHHHHc--CC-cccc
Q 004491 560 VPVLAGVCGTDPFRRVDYFLKQLESIGFFGVQNFPTVGLFD---GNFRQNLEETGMGYGLEVEMIDKAHKM--GL-LTTP 633 (749)
Q Consensus 560 tPViaGv~atDP~~~~~~~l~~lk~~Gf~GV~NfPTvgliD---G~fR~~LEe~G~gy~~EVemi~~A~~~--gl-~T~~ 633 (749)
.+|.+++..++ +-.+.+++|.+.|. -+-+-.+| |+=+.. +++|+..++. +. .-.+
T Consensus 83 L~v~~SvG~t~---e~~~r~~~lv~a~~-----~~d~i~~D~ahg~s~~~-----------~~~i~~i~~~~p~~~vi~G 143 (321)
T TIGR01306 83 LFASISVGVKA---CEYEFVTQLAEEAL-----TPEYITIDIAHGHSNSV-----------INMIKHIKTHLPDSFVIAG 143 (321)
T ss_pred cEEEEEcCCCH---HHHHHHHHHHhcCC-----CCCEEEEeCccCchHHH-----------HHHHHHHHHhCCCCEEEEe
Confidence 45666666554 33467777777761 02333344 433322 3567666663 22 2234
Q ss_pred cccCHHHHHHHHhccCcEEEeccCCCccccc-------cccc-ccCHHHHHHHHHHHHHHHHHhCCCeEEEEccCCCCCH
Q 004491 634 YAFNEGEAVKMAKAGADIIVAHMGLTTSGSI-------GAKT-ALSLDESVDRVQAIADAAHRINPDAIVLCHGGPISSP 705 (749)
Q Consensus 634 yvf~~eqa~~Ma~AGaDiiv~h~GlT~gG~~-------Ga~~-~~sl~~~~~~~~~i~~aa~~~~pdii~l~hGGPi~~p 705 (749)
-|-+.++|+.+.++|||.|.+++| .|.+ |... .+.+ +.|.+.+... ++-|+..|| |.+.
T Consensus 144 nV~t~e~a~~l~~aGad~I~V~~G---~G~~~~tr~~~g~g~~~~~l-------~ai~ev~~a~--~~pVIadGG-Ir~~ 210 (321)
T TIGR01306 144 NVGTPEAVRELENAGADATKVGIG---PGKVCITKIKTGFGTGGWQL-------AALRWCAKAA--RKPIIADGG-IRTH 210 (321)
T ss_pred cCCCHHHHHHHHHcCcCEEEECCC---CCccccceeeeccCCCchHH-------HHHHHHHHhc--CCeEEEECC-cCcH
Confidence 477999999999999999999876 3332 1111 1122 3444544444 355777766 8999
Q ss_pred HHHHHHHhhCCCccEEecCc
Q 004491 706 SEAEFILKRTKGVHGFYGAS 725 (749)
Q Consensus 706 ~d~~~~l~~~~~~~Gf~g~S 725 (749)
.|+-..|.- +++...-++
T Consensus 211 ~Di~KALa~--GAd~Vmig~ 228 (321)
T TIGR01306 211 GDIAKSIRF--GASMVMIGS 228 (321)
T ss_pred HHHHHHHHc--CCCEEeech
Confidence 999888743 445444333
No 309
>cd04726 KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxylase (KGPDC) and D-arabino-3-hexulose-6-phosphate synthase (HPS). KGPDC catalyzes the formation of L-xylulose 5-phosphate and carbon dioxide from 3-keto-L-gulonate 6-phosphate as part of the anaerobic pathway for L-ascorbate utilization in some eubacteria. HPS catalyzes the formation of D-arabino-3-hexulose-6-phosphate from D-ribulose 5-phosphate and formaldehyde in microorganisms that can use formaldehyde as a carbon source. Both catalyze reactions that involve the Mg2+-assisted formation and stabilization of 1,2-enediolate reaction intermediates.
Probab=76.47 E-value=17 Score=36.19 Aligned_cols=86 Identities=19% Similarity=0.156 Sum_probs=51.7
Q ss_pred HHHHHHHHHc--CCccc--ccccCH--HHHHHHHhccCcEEEeccCCCcccccccccccCHHHHHHHHHHHHHHHHHhCC
Q 004491 618 VEMIDKAHKM--GLLTT--PYAFNE--GEAVKMAKAGADIIVAHMGLTTSGSIGAKTALSLDESVDRVQAIADAAHRINP 691 (749)
Q Consensus 618 Vemi~~A~~~--gl~T~--~yvf~~--eqa~~Ma~AGaDiiv~h~GlT~gG~~Ga~~~~sl~~~~~~~~~i~~aa~~~~p 691 (749)
.+.|+.-++. ++.-. -.+.+. .+++++.++|||.|+.|.-- .. +...++.+++++.+-
T Consensus 41 ~~~i~~i~~~~~~~~i~~~~~v~~~~~~~~~~~~~aGad~i~~h~~~-------------~~---~~~~~~i~~~~~~g~ 104 (202)
T cd04726 41 MEAVRALREAFPDKIIVADLKTADAGALEAEMAFKAGADIVTVLGAA-------------PL---STIKKAVKAAKKYGK 104 (202)
T ss_pred HHHHHHHHHHCCCCEEEEEEEeccccHHHHHHHHhcCCCEEEEEeeC-------------CH---HHHHHHHHHHHHcCC
Confidence 4556555554 33222 244455 47899999999999999531 11 223556667777666
Q ss_pred CeEEEEccCCCCCHHHHHHHHhhCCCccEE
Q 004491 692 DAIVLCHGGPISSPSEAEFILKRTKGVHGF 721 (749)
Q Consensus 692 dii~l~hGGPi~~p~d~~~~l~~~~~~~Gf 721 (749)
.+++-+++ -.||+++...++...+..++
T Consensus 105 ~~~v~~~~--~~t~~e~~~~~~~~~d~v~~ 132 (202)
T cd04726 105 EVQVDLIG--VEDPEKRAKLLKLGVDIVIL 132 (202)
T ss_pred eEEEEEeC--CCCHHHHHHHHHCCCCEEEE
Confidence 66653453 24788888876644444444
No 310
>TIGR01361 DAHP_synth_Bsub phospho-2-dehydro-3-deoxyheptonate aldolase. The member of this family from Synechocystis PCC 6803, CcmA, was shown to be essential for carboxysome formation. However, no other candidate for this enzyme is present in that species, chorismate biosynthesis does occur, other species having this protein lack carboxysomes but appear to make chorismate, and a requirement of CcmA for carboxysome formation does not prohibit a role in chorismate biosynthesis.
Probab=76.26 E-value=10 Score=40.54 Aligned_cols=127 Identities=17% Similarity=0.238 Sum_probs=81.6
Q ss_pred CceEEeeccCCCCCCHHHHHHHHHHcCccceecCCcccccchhhhhh-hhhcCCchHHHHHHH-HHHHHcCCcccccccC
Q 004491 560 VPVLAGVCGTDPFRRVDYFLKQLESIGFFGVQNFPTVGLFDGNFRQN-LEETGMGYGLEVEMI-DKAHKMGLLTTPYAFN 637 (749)
Q Consensus 560 tPViaGv~atDP~~~~~~~l~~lk~~Gf~GV~NfPTvgliDG~fR~~-LEe~G~gy~~EVemi-~~A~~~gl~T~~yvf~ 637 (749)
..+|||-|.-+-...+-+.-++|++.|+.-..+| .+. =|.+ ....|+| +..++.| +.+++.|+..+.=+|+
T Consensus 26 ~~~IAGpc~ie~~~~~~~~A~~lk~~~~k~~r~~----~~K--pRtsp~s~~g~g-~~gl~~l~~~~~~~Gl~~~t~~~d 98 (260)
T TIGR01361 26 PIVIAGPCSVESEEQIMETARFVKEAGAKILRGG----AFK--PRTSPYSFQGLG-EEGLKLLRRAADEHGLPVVTEVMD 98 (260)
T ss_pred EEEEEeCCccCCHHHHHHHHHHHHHHHHHhccCc----eec--CCCCCccccccH-HHHHHHHHHHHHHhCCCEEEeeCC
Confidence 4489999999987777788888888877622211 111 0111 1234555 4444444 4578999999999999
Q ss_pred HHHHHHHHhccCcEEEeccCCCc-----------cccccccccc--CHHHHHHHHHHHHHHHHHhCCCeEEEEc
Q 004491 638 EGEAVKMAKAGADIIVAHMGLTT-----------SGSIGAKTAL--SLDESVDRVQAIADAAHRINPDAIVLCH 698 (749)
Q Consensus 638 ~eqa~~Ma~AGaDiiv~h~GlT~-----------gG~~Ga~~~~--sl~~~~~~~~~i~~aa~~~~pdii~l~h 698 (749)
++++..+.+. +|++=+=-+..+ |--+..++.. |++|....++.|.+. =|++ |+|||
T Consensus 99 ~~~~~~l~~~-~d~lkI~s~~~~n~~LL~~~a~~gkPVilk~G~~~t~~e~~~Ave~i~~~---Gn~~-i~l~~ 167 (260)
T TIGR01361 99 PRDVEIVAEY-ADILQIGARNMQNFELLKEVGKQGKPVLLKRGMGNTIEEWLYAAEYILSS---GNGN-VILCE 167 (260)
T ss_pred hhhHHHHHhh-CCEEEECcccccCHHHHHHHhcCCCcEEEeCCCCCCHHHHHHHHHHHHHc---CCCc-EEEEE
Confidence 9999999999 999865433322 3344445553 577777776666422 2455 56677
No 311
>cd00439 Transaldolase Transaldolase. Enzymes found in the non-oxidative branch of the pentose phosphate pathway, that catalyze the reversible transfer of a dihydroxyacetone group from fructose-6-phosphate to erythrose-4-phosphate yielding sedoheptulose-7-phosphate and glyceraldehyde-3-phosphate. They are members of the class I aldolases, who are characterized by using a Schiff-base mechanism for stabilization of the reaction intermediates.
Probab=75.99 E-value=13 Score=39.71 Aligned_cols=90 Identities=14% Similarity=0.109 Sum_probs=61.7
Q ss_pred HHHHHHHHHcCCcccc-cccCHHHHHHHHhccCcEEEeccCCCcccccc--cccccCH--HHHHHHHHHHHHHHHHhCCC
Q 004491 618 VEMIDKAHKMGLLTTP-YAFNEGEAVKMAKAGADIIVAHMGLTTSGSIG--AKTALSL--DESVDRVQAIADAAHRINPD 692 (749)
Q Consensus 618 Vemi~~A~~~gl~T~~-yvf~~eqa~~Ma~AGaDiiv~h~GlT~gG~~G--a~~~~sl--~~~~~~~~~i~~aa~~~~pd 692 (749)
++.++.-.+.|+-|.. -||+.+||..-++|||++|-+.+|.-..-... .++...+ ++.++.++++++..++.+++
T Consensus 129 l~A~~~L~~~GI~vn~T~vfs~~Qa~~aa~Aga~~ispfvgRid~~~~~~~~~~~~d~~~~~gi~~~~~~~~~~~~~~~~ 208 (252)
T cd00439 129 IPAIKDLIAAGISVNVTLIFSIAQYEAVADAGTSVASPFVSRIDTLMDKMLEQIGLDLRGKAGVAQVTLAYKLYKQKFKK 208 (252)
T ss_pred HHHHHHHHHCCCceeeeeecCHHHHHHHHHcCCCEEEEeccHHHHHhhhhccccccccccCcHHHHHHHHHHHHHHhCCC
Confidence 6778888888998665 59999999999999999999999865221110 0111111 26777888888888888787
Q ss_pred eEEEEccCCCCCHHHHH
Q 004491 693 AIVLCHGGPISSPSEAE 709 (749)
Q Consensus 693 ii~l~hGGPi~~p~d~~ 709 (749)
.-+|. .-+.+++++.
T Consensus 209 tkiL~--AS~r~~~~v~ 223 (252)
T cd00439 209 QRVLW--ASFSDTLYVA 223 (252)
T ss_pred CeEEE--EeeCCHHHHH
Confidence 77773 2334444443
No 312
>PRK13017 dihydroxy-acid dehydratase; Provisional
Probab=75.75 E-value=6.2 Score=46.99 Aligned_cols=277 Identities=17% Similarity=0.196 Sum_probs=168.2
Q ss_pred CCcEEEEec-cCCchHHHH-------HHHHHHHhcCccEEEEecCCCchH---------------HHHHHHHcCCceEEE
Q 004491 208 EKCTVGITM-FGVTTPCVN-------AVKERLEKEGYETMVFHATGVGGR---------------AMEALVKEGFIQGVL 264 (749)
Q Consensus 208 ~kp~IgiTM-FGvTTp~V~-------~~r~~Le~~GyEvlVFHATG~GGr---------------AME~Li~eG~~~gVl 264 (749)
+||.|||-. |.--+||=. ++++-..+.|--.+-|++.+.+.. ..|.+++.-.|||++
T Consensus 46 ~KP~IgI~ns~se~~Pch~hl~~la~~vk~gI~~aGG~p~ef~ti~v~d~~~~~~~l~sRelIAd~iE~~~~a~~~Dg~V 125 (596)
T PRK13017 46 GKPIIGIAQTGSDLSPCNRHHLELAERVKEGIRDAGGIPMEFPVHPIQETGKRPTAALDRNLAYLGLVEILYGYPLDGVV 125 (596)
T ss_pred CCCEEEEEecccCCcCchhhHHHHHHHHHHHHHHcCCeeEecccccccccCCCcccccCHHHHHHHHHHHHhcCCcceEE
Confidence 799999876 888889854 455556667888999999887531 357777888888887
Q ss_pred eCchhhhhhhhhCCccCCCCchhhhhhhcCCCeEEecCccccccCCCCCCCCccccCCceee------ecCcceEEecCH
Q 004491 265 DITTTEVADYVVGGVMACDSSRFDATIEKKIPLVLSVGALDMVNFGAKDTIPSKFQRRKIHV------HNQQVSLMRTTV 338 (749)
Q Consensus 265 DlTttElaD~l~GGv~saGp~RL~AA~~~GIPqVVspGalDmVnFG~~dtvPe~f~~R~~~~------HNp~vTlmRTt~ 338 (749)
=|+- ||- --|.=|-||+|.+||.|+++|+-= .|-.|+++++-. ---+...=+.|.
T Consensus 126 ~i~g---CDK-------~~PG~lMaaarlniP~i~v~GG~m---------~~G~~~g~~~~~~~~~~e~~g~~~~G~i~~ 186 (596)
T PRK13017 126 LTTG---CDK-------TTPACLMAAATVDLPAIVLSGGPM---------LDGWHEGERVGSGTVIWKARELLAAGEIDY 186 (596)
T ss_pred Eecc---CCC-------ccHHHHHHHHhcCCCEEEEeCCCc---------CCCCCCCcCcccchhHHHHHHHHHcCCCCH
Confidence 5543 332 246679999999999999999743 344555554311 111222335566
Q ss_pred HHHHHHHHHHHHHHccCCCCeEEEeeCCCCcccCCCCCCCCChhhhHHHHHHHHHhcccCCCceEEecCCCCCCH---HH
Q 004491 339 DENKKFAAFIANKLNQSSSKIRLCLPQNGISALDAPGKPFYDPEATGTLISELRTLIQTNEDRQVKVYPHNINDS---EF 415 (749)
Q Consensus 339 eE~~~ig~~iA~kLn~a~gpv~vllP~~G~S~lD~~G~pf~DPeAd~al~~~L~~~l~~~~~~~v~~~d~hINDp---~F 415 (749)
||..++-+ +.+++ -|-. .-.|=...-+.+.++|==.|+++... |+ .|+ ..
T Consensus 187 eel~~~e~------~acp~--------~GsC------~gmgTANTM~~l~EaLGm~LPgsa~~-----pA--~~~~r~~~ 239 (596)
T PRK13017 187 EEFMELVA------SSAPS--------VGHC------NTMGTASTMNALAEALGMSLPGCAAI-----PA--PYRERGQM 239 (596)
T ss_pred HHHHHHHH------hcCCC--------CCcc------ccccHHHHHHHHHHHHhCCCCCCcCC-----CC--CCHHHHHH
Confidence 66654332 22222 2221 33566677778888888888765322 22 233 45
Q ss_pred HHHHHHHHHHHHhccccccCCccccccccccccccccccCCCcccccCCCCCCCCCCcccccHHHHHHHHHHHhhcCCCe
Q 004491 416 ADALVDSFLEISGKNLMAFSSAHHVSCERHEDSVSNIYSSSHGTICYSPSNFPDARPETLQRTQAILSKLKYQIDKGLPI 495 (749)
Q Consensus 416 A~a~a~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~il~~L~~~i~~~~pi 495 (749)
|....+++.+|+++ |-||-.++||+.+...++--.+-|.
T Consensus 240 a~~aG~~iv~lv~~---------------------------------------~i~p~dIlT~~afeNAi~v~~A~GG-- 278 (596)
T PRK13017 240 AYATGKRIVEMVWE---------------------------------------DLKPSDILTREAFENAIVVNSAIGG-- 278 (596)
T ss_pred HHHHHHHHHHHHHc---------------------------------------CCChHHhcCHHHHHHHHHHHhhcCC--
Confidence 66666677777643 2356667888888777766554331
Q ss_pred EEecccc--chhhhhhhhcCCcEEEEeccccccccCCccccccccccCchHHHHHhhhhhcCCCCCCceEEeeccCCCCC
Q 004491 496 IGAGAGT--GISAKFEEAGGVDLIVLYNSGRFRMAGRGSLAGLLPFADANAVVLEMANEVLPVVKEVPVLAGVCGTDPFR 573 (749)
Q Consensus 496 ig~gaGt--GlsAk~ae~gGaDli~~ynsGrfR~~G~~SlagllpygdaN~iv~e~~~eilp~v~~tPViaGv~atDP~~ 573 (749)
+.=+ =|. -.|.++|+||=+ +..++|- ++||+|+-+-..-||.
T Consensus 279 ---STNavlHL~-AIA~eagi~l~l-----------------------------ddfd~is---~~vP~l~~l~PsG~~~ 322 (596)
T PRK13017 279 ---STNAPIHLI-AIARHAGVELSL-----------------------------DDWQRVG---EDVPLLVNLQPAGKYL 322 (596)
T ss_pred ---CccHHHHHH-HHHHHcCCCCCH-----------------------------HHHHHHh---ccCCeeEEecCCCccc
Confidence 0000 011 245566777422 2233332 4689999998888873
Q ss_pred C--------HHHHHHHHHHcCccceecCCcccccchhhhhhhhhc
Q 004491 574 R--------VDYFLKQLESIGFFGVQNFPTVGLFDGNFRQNLEET 610 (749)
Q Consensus 574 ~--------~~~~l~~lk~~Gf~GV~NfPTvgliDG~fR~~LEe~ 610 (749)
- +...+++|++.|+= =.+-+||.. -.++++|++.
T Consensus 323 m~Dl~~aGGvpavmk~L~~~glL-~~d~lTVtG--~Tl~e~l~~~ 364 (596)
T PRK13017 323 GEDFHRAGGVPAVLAELLRAGLL-HGDALTVSG--RTIGENIAGA 364 (596)
T ss_pred HHHHHHCcCHHHHHHHHHHCCCc-CCCCCCcCC--cCHHHHhccC
Confidence 2 44568889888763 123466532 2467888754
No 313
>PRK13396 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=75.75 E-value=16 Score=41.10 Aligned_cols=125 Identities=22% Similarity=0.346 Sum_probs=77.7
Q ss_pred eEEeeccCCCCCCHHHHHHHHHHcCccceecCCcccccchhhh--hh-hhhcCCchHHHHHHHHH-HHHcCCcccccccC
Q 004491 562 VLAGVCGTDPFRRVDYFLKQLESIGFFGVQNFPTVGLFDGNFR--QN-LEETGMGYGLEVEMIDK-AHKMGLLTTPYAFN 637 (749)
Q Consensus 562 ViaGv~atDP~~~~~~~l~~lk~~Gf~GV~NfPTvgliDG~fR--~~-LEe~G~gy~~EVemi~~-A~~~gl~T~~yvf~ 637 (749)
||||=|.-+-.-.+-+.=++||+.|.. |-- .|.|. .+ =.-.|+| +...+++++ +++.||..+.=+|+
T Consensus 104 vIAGPCsIEs~eq~l~~A~~lk~~g~~----~~r----~g~~kpRtsp~sf~G~g-~~gl~~L~~~~~e~Gl~~~tev~d 174 (352)
T PRK13396 104 VVAGPCSVENEEMIVETAKRVKAAGAK----FLR----GGAYKPRTSPYAFQGHG-ESALELLAAAREATGLGIITEVMD 174 (352)
T ss_pred EEEeCCcccCHHHHHHHHHHHHHcCCC----EEE----eeeecCCCCCcccCCch-HHHHHHHHHHHHHcCCcEEEeeCC
Confidence 677777777666666666777777532 111 12221 00 1126788 889999999 56899999999999
Q ss_pred HHHHHHHHhccCcEEEeccCCCc-----------cccccccccc--CHHHHHHHHHHHHHHHHHhCCCeEEEEccC
Q 004491 638 EGEAVKMAKAGADIIVAHMGLTT-----------SGSIGAKTAL--SLDESVDRVQAIADAAHRINPDAIVLCHGG 700 (749)
Q Consensus 638 ~eqa~~Ma~AGaDiiv~h~GlT~-----------gG~~Ga~~~~--sl~~~~~~~~~i~~aa~~~~pdii~l~hGG 700 (749)
++++..+.+. +|++=+=-+..+ |--+--|+.. |++|-...++.|.+ .-|++ |+|||=|
T Consensus 175 ~~~v~~~~~~-~d~lqIga~~~~n~~LL~~va~t~kPVllk~G~~~t~ee~~~A~e~i~~---~Gn~~-viL~erG 245 (352)
T PRK13396 175 AADLEKIAEV-ADVIQVGARNMQNFSLLKKVGAQDKPVLLKRGMAATIDEWLMAAEYILA---AGNPN-VILCERG 245 (352)
T ss_pred HHHHHHHHhh-CCeEEECcccccCHHHHHHHHccCCeEEEeCCCCCCHHHHHHHHHHHHH---cCCCe-EEEEecC
Confidence 9999999998 999865433221 2222223332 56666655555532 22444 6667654
No 314
>PRK09250 fructose-bisphosphate aldolase; Provisional
Probab=75.68 E-value=10 Score=42.64 Aligned_cols=125 Identities=22% Similarity=0.315 Sum_probs=75.2
Q ss_pred HHHHHHcCccceecCCcccccchhhhhhhhhcCCchHHHHHHHHHHHHcCCccccccc--CH-----HH-----------
Q 004491 579 LKQLESIGFFGVQNFPTVGLFDGNFRQNLEETGMGYGLEVEMIDKAHKMGLLTTPYAF--NE-----GE----------- 640 (749)
Q Consensus 579 l~~lk~~Gf~GV~NfPTvgliDG~fR~~LEe~G~gy~~EVemi~~A~~~gl~T~~yvf--~~-----eq----------- 640 (749)
.++-.++|-.+|.=.=-+| +-.-++.||+.+ +..++||+.||.++.++| .+ .+
T Consensus 152 VedAlrLGAdAV~~tvy~G--s~~E~~ml~~l~-------~i~~ea~~~GlPlv~~~YpRG~~i~~~~d~~~~~d~Ia~A 222 (348)
T PRK09250 152 VEDALRLGAVAVGATIYFG--SEESRRQIEEIS-------EAFEEAHELGLATVLWSYLRNSAFKKDGDYHTAADLTGQA 222 (348)
T ss_pred HHHHHHCCCCEEEEEEecC--CHHHHHHHHHHH-------HHHHHHHHhCCCEEEEecccCcccCCcccccccHHHHHHH
Confidence 5667888888774221112 223344554432 567899999999998544 22 11
Q ss_pred HHHHHhccCcEEEeccCCCccccc----cc-----ccccCHHHHHHHHHHHHHHHHHhCCCeEEEEccCCCCCHHHHHHH
Q 004491 641 AVKMAKAGADIIVAHMGLTTSGSI----GA-----KTALSLDESVDRVQAIADAAHRINPDAIVLCHGGPISSPSEAEFI 711 (749)
Q Consensus 641 a~~Ma~AGaDiiv~h~GlT~gG~~----Ga-----~~~~sl~~~~~~~~~i~~aa~~~~pdii~l~hGGPi~~p~d~~~~ 711 (749)
|+.-++-|||||=...--+.++.- |- ....+.+...++...+.++|-+= -+.|+|-|||=.+.+|+-..
T Consensus 223 aRiaaELGADIVKv~yp~~~~~f~~v~~~~~~~~~~~~~~~~~~~~~~~~~V~ac~ag--~vpVviAGG~k~~~~e~L~~ 300 (348)
T PRK09250 223 NHLAATIGADIIKQKLPTNNGGYKAINFGKTDDRVYSKLTSDHPIDLVRYQVANCYMG--RRGLINSGGASKGEDDLLDA 300 (348)
T ss_pred HHHHHHHcCCEEEecCCCChhhHHHhhcccccccccccccccchHHHHHHHHHhhccC--CceEEEeCCCCCCHHHHHHH
Confidence 455579999999876542222211 10 11245566666667776665211 25799999999888777666
Q ss_pred Hhh
Q 004491 712 LKR 714 (749)
Q Consensus 712 l~~ 714 (749)
.+.
T Consensus 301 v~~ 303 (348)
T PRK09250 301 VRT 303 (348)
T ss_pred HHH
Confidence 544
No 315
>PLN02858 fructose-bisphosphate aldolase
Probab=75.67 E-value=13 Score=48.51 Aligned_cols=169 Identities=20% Similarity=0.257 Sum_probs=106.5
Q ss_pred hhhhhhcCCcEEEEeccccccccCCccccccccccCchHHHHHhhhhhcCCCCCCceEEeeccCCCCCCHHHHHHHHHHc
Q 004491 506 AKFEEAGGVDLIVLYNSGRFRMAGRGSLAGLLPFADANAVVLEMANEVLPVVKEVPVLAGVCGTDPFRRVDYFLKQLESI 585 (749)
Q Consensus 506 Ak~ae~gGaDli~~ynsGrfR~~G~~SlagllpygdaN~iv~e~~~eilp~v~~tPViaGv~atDP~~~~~~~l~~lk~~ 585 (749)
=+.||+-+..+||-...|.++..|.. + =..+..++++. .+||.-= .|=-.+.+ ++.+-.+.
T Consensus 1131 i~aAe~~~sPvIl~~~~~~~~~~~~~----~------~~~~~~~a~~~-----~vpV~lH---LDHg~~~~-~i~~ai~~ 1191 (1378)
T PLN02858 1131 VAAAEAEKSPAILQVHPGALKQGGIP----L------VSCCIAAAEQA-----SVPITVH---FDHGTSKH-ELLEALEL 1191 (1378)
T ss_pred HHHHHHhCCCEEEECCccHHhhcCHH----H------HHHHHHHHHHC-----CCCEEEE---CCCCCCHH-HHHHHHHh
Confidence 36799999999999888777654422 1 12344566542 4677643 34444444 45555567
Q ss_pred CccceecCCcccccchh---hhhhhhhcCCchHHHHHHHHHHHHcCCcc------c-------------ccccCHHHHHH
Q 004491 586 GFFGVQNFPTVGLFDGN---FRQNLEETGMGYGLEVEMIDKAHKMGLLT------T-------------PYAFNEGEAVK 643 (749)
Q Consensus 586 Gf~GV~NfPTvgliDG~---fR~~LEe~G~gy~~EVemi~~A~~~gl~T------~-------------~yvf~~eqa~~ 643 (749)
||+.| +|||+ |.+|++.| + |+.+.||.+|+.. + .+-.++|||++
T Consensus 1192 Gf~SV-------M~DgS~l~~eeNi~~t-----~--~vv~~Ah~~gv~VEaElG~v~g~e~~~~~~~~~~~~T~p~~a~~ 1257 (1378)
T PLN02858 1192 GFDSV-------MVDGSHLSFTENISYT-----K--SISSLAHSKGLMVEAELGRLSGTEDGLTVEEYEAKLTDVDQAKE 1257 (1378)
T ss_pred CCCEE-------EEeCCCCCHHHHHHHH-----H--HHHHHHHHcCCEEEEEecccCCccCCccccccccCCCCHHHHHH
Confidence 98766 78886 55565433 2 4466777665421 1 22457899999
Q ss_pred HHh-ccCcEEEeccCCCcccccccccccCHHHHHHHHHHHHHHHHHhCCCeEEEEccCCCCCHHHHHHHHh
Q 004491 644 MAK-AGADIIVAHMGLTTSGSIGAKTALSLDESVDRVQAIADAAHRINPDAIVLCHGGPISSPSEAEFILK 713 (749)
Q Consensus 644 Ma~-AGaDiiv~h~GlT~gG~~Ga~~~~sl~~~~~~~~~i~~aa~~~~pdii~l~hGGPi~~p~d~~~~l~ 713 (749)
+.+ -|+|.+-+-+|-..|-..+-+..+.+ +++++|.++.. ++++-+..|||-=...++++...+
T Consensus 1258 Fv~~TgvD~LAvaiGt~HG~Y~~~~p~l~~----~~l~~i~~~~~--~~~vpLVlHGgSG~~~~~~~~ai~ 1322 (1378)
T PLN02858 1258 FIDETGIDALAVCIGNVHGKYPASGPNLRL----DLLKELRALSS--KKGVLLVLHGASGLPESLIKECIE 1322 (1378)
T ss_pred HHHhcCCcEEeeecccccccCCCCCCccCH----HHHHHHHHHhc--CCCCcEEEeCCCCCCHHHHHHHHH
Confidence 985 59999999998776665432223333 46677755543 256777789995555777776653
No 316
>TIGR00007 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase. Examples of this enzyme in Actinobacteria have been found to be bifunctional, also possessing phosphoribosylanthranilate isomerase activity ; the trusted cutoff here has now been raised to 275.0 to exclude the bifunctional group, now represented by model TIGR01919. HisA from Lactococcus lactis was reported to be inactive (MEDLINE:93322317).
Probab=75.63 E-value=29 Score=35.50 Aligned_cols=148 Identities=18% Similarity=0.237 Sum_probs=83.4
Q ss_pred HHHHHHHHHHhhcCCCeE-EeccccchhhhhhhhcCCcEEEEeccccccccCCccccccccccCchHHHHHhhhh-----
Q 004491 479 QAILSKLKYQIDKGLPII-GAGAGTGISAKFEEAGGVDLIVLYNSGRFRMAGRGSLAGLLPFADANAVVLEMANE----- 552 (749)
Q Consensus 479 ~~il~~L~~~i~~~~pii-g~gaGtGlsAk~ae~gGaDli~~ynsGrfR~~G~~SlagllpygdaN~iv~e~~~e----- 552 (749)
.++++.+++.. ..|+. |.|.-+=--++.+-..|||.++ .++..++ |. +.+.+++++
T Consensus 61 ~~~i~~i~~~~--~~pi~~ggGI~~~ed~~~~~~~Ga~~vv-lgs~~l~--------------d~-~~~~~~~~~~g~~~ 122 (230)
T TIGR00007 61 LPVIKKIVRET--GVPVQVGGGIRSLEDVEKLLDLGVDRVI-IGTAAVE--------------NP-DLVKELLKEYGPER 122 (230)
T ss_pred HHHHHHHHHhc--CCCEEEeCCcCCHHHHHHHHHcCCCEEE-EChHHhh--------------CH-HHHHHHHHHhCCCc
Confidence 45777777765 45554 4444444556667779999876 3333332 22 333444433
Q ss_pred hcCCCCC-CceEEeeccCCC--CCCHHHHHHHHHHcCccceecCCcccccchhhhhhhhhcCCchHHHHHHHHHHHHcCC
Q 004491 553 VLPVVKE-VPVLAGVCGTDP--FRRVDYFLKQLESIGFFGVQNFPTVGLFDGNFRQNLEETGMGYGLEVEMIDKAHKMGL 629 (749)
Q Consensus 553 ilp~v~~-tPViaGv~atDP--~~~~~~~l~~lk~~Gf~GV~NfPTvgliDG~fR~~LEe~G~gy~~EVemi~~A~~~gl 629 (749)
|++.++- -.- ..+.+++. -.+...+++++.+.|+.++.=.. + ...|+....-.++|++.++.
T Consensus 123 i~~sid~~~~~-v~~~g~~~~~~~~~~~~~~~~~~~g~~~ii~~~----~--------~~~g~~~g~~~~~i~~i~~~-- 187 (230)
T TIGR00007 123 IVVSLDARGGE-VAVKGWLEKSEVSLEELAKRLEELGLEGIIYTD----I--------SRDGTLSGPNFELTKELVKA-- 187 (230)
T ss_pred EEEEEEEECCE-EEEcCCcccCCCCHHHHHHHHHhCCCCEEEEEe----e--------cCCCCcCCCCHHHHHHHHHh--
Confidence 3222110 000 11223332 24667799999999999875211 1 11122222236777777765
Q ss_pred ccccc-----ccCHHHHHHHHhccCcEEEeccCCC
Q 004491 630 LTTPY-----AFNEGEAVKMAKAGADIIVAHMGLT 659 (749)
Q Consensus 630 ~T~~y-----vf~~eqa~~Ma~AGaDiiv~h~GlT 659 (749)
..+|. +++.+++++|.+.|||-+++--.+-
T Consensus 188 ~~ipvia~GGi~~~~di~~~~~~Gadgv~ig~a~~ 222 (230)
T TIGR00007 188 VNVPVIASGGVSSIDDLIALKKLGVYGVIVGKALY 222 (230)
T ss_pred CCCCEEEeCCCCCHHHHHHHHHCCCCEEEEeHHHH
Confidence 44555 4788999999999999877755544
No 317
>cd08564 GDPD_GsGDE_like Glycerophosphodiester phosphodiesterase domain of putative Galdieria sulphuraria glycerophosphodiester phosphodiesterase and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in putative Galdieria sulphuraria glycerophosphodiester phosphodiesterase (GsGDE, EC 3.1.4.46) and its uncharacterized eukaryotic homologs. Members in this family show high sequence similarity to Escherichia coli GP-GDE, which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols.
Probab=75.52 E-value=13 Score=39.17 Aligned_cols=91 Identities=23% Similarity=0.221 Sum_probs=58.5
Q ss_pred HHHHhhhhhcCCCCCCceEEeeccCCCCCCHHHHHHHHHHcCccceecCCcccccchhhhhhhhhcCCchHHHHHHHHHH
Q 004491 545 VVLEMANEVLPVVKEVPVLAGVCGTDPFRRVDYFLKQLESIGFFGVQNFPTVGLFDGNFRQNLEETGMGYGLEVEMIDKA 624 (749)
Q Consensus 545 iv~e~~~eilp~v~~tPViaGv~atDP~~~~~~~l~~lk~~Gf~GV~NfPTvgliDG~fR~~LEe~G~gy~~EVemi~~A 624 (749)
-++++.+++.|-.-++|+..=+.-. +-.....+++.++..|..+|. ++ ... + .-++++.+
T Consensus 160 ~~l~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~v~-~~-~~~--------~---------~~~~v~~~ 219 (265)
T cd08564 160 DRLDLLKALRPNKLNVPIALLFNEV-KSPSPLDFLEQAKYYNATWVN-FS-YDF--------W---------TEEFVKKA 219 (265)
T ss_pred hHHHHHHHhCcCCCCceEEEEecCC-CCcccccHHHHHHhcCCceee-ec-hhh--------h---------hHHHHHHH
Confidence 4455667777752123432222111 112445677778887777763 22 111 1 34889999
Q ss_pred HHcCCcccccc----c-CHHHHHHHHhccCcEEEec
Q 004491 625 HKMGLLTTPYA----F-NEGEAVKMAKAGADIIVAH 655 (749)
Q Consensus 625 ~~~gl~T~~yv----f-~~eqa~~Ma~AGaDiiv~h 655 (749)
|++|+.-.+|. . ++++++++.+.|+|.||..
T Consensus 220 ~~~Gl~v~~wT~~~~~n~~~~~~~l~~~GvdgiiTD 255 (265)
T cd08564 220 HENGLKVMTYFDEPVNDNEEDYKVYLELGVDCICPN 255 (265)
T ss_pred HHcCCEEEEecCCCCCCCHHHHHHHHHcCCCEEEcC
Confidence 99999999994 4 4899999999999999864
No 318
>PLN02746 hydroxymethylglutaryl-CoA lyase
Probab=75.49 E-value=8.9 Score=42.90 Aligned_cols=78 Identities=22% Similarity=0.207 Sum_probs=55.8
Q ss_pred ccccCHHHHHHHHhccCcEEEeccCCCcccccc-cccccCHHHHHHHHHHHHHHHHHhCCCe---EEEEccCCCCCHHHH
Q 004491 633 PYAFNEGEAVKMAKAGADIIVAHMGLTTSGSIG-AKTALSLDESVDRVQAIADAAHRINPDA---IVLCHGGPISSPSEA 708 (749)
Q Consensus 633 ~yvf~~eqa~~Ma~AGaDiiv~h~GlT~gG~~G-a~~~~sl~~~~~~~~~i~~aa~~~~pdi---i~l~hGGPi~~p~d~ 708 (749)
..+-|.++.++..++|+|.|.+-+. ++-..- .+...|.+|+++.+.++.+.|++..-.+ |....|.|..+.-|.
T Consensus 119 ~l~~n~~die~A~~~g~~~v~i~~s--~Sd~h~~~n~~~t~~e~l~~~~~~v~~Ak~~Gl~v~~~is~~fg~p~~~r~~~ 196 (347)
T PLN02746 119 VLTPNLKGFEAAIAAGAKEVAVFAS--ASESFSKSNINCSIEESLVRYREVALAAKKHSIPVRGYVSCVVGCPIEGPVPP 196 (347)
T ss_pred EEcCCHHHHHHHHHcCcCEEEEEEe--cCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCeEEEEEEeeecCCccCCCCH
Confidence 4566999999999999998555443 322222 3446899999999999999999998877 334467676655444
Q ss_pred HHHH
Q 004491 709 EFIL 712 (749)
Q Consensus 709 ~~~l 712 (749)
+|++
T Consensus 197 ~~l~ 200 (347)
T PLN02746 197 SKVA 200 (347)
T ss_pred HHHH
Confidence 4443
No 319
>cd00405 PRAI Phosphoribosylanthranilate isomerase (PRAI) catalyzes the fourth step of the tryptophan biosynthesis, the conversion of N-(5'- phosphoribosyl)-anthranilate (PRA) to 1-(o-carboxyphenylamino)- 1-deoxyribulose 5-phosphate (CdRP). Most PRAIs are monomeric, monofunctional and thermolabile, but in some thermophile organisms PRAI is dimeric for reasons of stability and in others it is fused to other components of the tryptophan biosynthesis pathway to form multifunctional enzymes.
Probab=75.36 E-value=45 Score=33.74 Aligned_cols=177 Identities=17% Similarity=0.165 Sum_probs=98.5
Q ss_pred hhhhhhhcCCcEEEEeccccccccCCccccccccccCchHHH-HHhhhhhcCCCCCCceEEeeccCCCCCCHHHHHHHHH
Q 004491 505 SAKFEEAGGVDLIVLYNSGRFRMAGRGSLAGLLPFADANAVV-LEMANEVLPVVKEVPVLAGVCGTDPFRRVDYFLKQLE 583 (749)
Q Consensus 505 sAk~ae~gGaDli~~ynsGrfR~~G~~SlagllpygdaN~iv-~e~~~eilp~v~~tPViaGv~atDP~~~~~~~l~~lk 583 (749)
.++.+.++|||+|=. |. +..+-..+ .++++++...++..+--.||...|. .+..++-++
T Consensus 11 d~~~a~~~Gvd~ig~------i~-----------~~~s~R~v~~~~a~~l~~~~~~~~~~V~v~vn~~---~~~i~~ia~ 70 (203)
T cd00405 11 DALAAAEAGADAIGF------IF-----------APKSPRYVSPEQAREIVAALPPFVKRVGVFVNED---LEEILEIAE 70 (203)
T ss_pred HHHHHHHcCCCEEEE------ec-----------CCCCCCCCCHHHHHHHHHhCCCCCcEEEEEeCCC---HHHHHHHHH
Confidence 478899999999842 21 22233334 7888887777765334456666664 666677778
Q ss_pred HcCccceecCCcccccchhhhhhhhhcCCchHHHHHHHHHHHHc---CCc-ccccccCHHHHHHH-HhccCcEEEeccCC
Q 004491 584 SIGFFGVQNFPTVGLFDGNFRQNLEETGMGYGLEVEMIDKAHKM---GLL-TTPYAFNEGEAVKM-AKAGADIIVAHMGL 658 (749)
Q Consensus 584 ~~Gf~GV~NfPTvgliDG~fR~~LEe~G~gy~~EVemi~~A~~~---gl~-T~~yvf~~eqa~~M-a~AGaDiiv~h~Gl 658 (749)
+.|..|||=. | . + ..+.++..++. .++ .+.+.-+.+..... .+.|||.+...-.
T Consensus 71 ~~~~d~Vqlh-------g----~--------e-~~~~~~~l~~~~~~~~i~~i~~~~~~~~~~~~~~~~~aD~il~dt~- 129 (203)
T cd00405 71 ELGLDVVQLH-------G----D--------E-SPEYCAQLRARLGLPVIKAIRVKDEEDLEKAAAYAGEVDAILLDSK- 129 (203)
T ss_pred hcCCCEEEEC-------C----C--------C-CHHHHHHHHhhcCCcEEEEEecCChhhHHHhhhccccCCEEEEcCC-
Confidence 8899999732 0 0 0 12334444432 222 13322222211112 2479999877532
Q ss_pred Ccccccc-cccccCHHHHHHHHHHHHHHHHHhCCCeEEEEccCCCCCHHHHHHHHhhCCCccEEecCcccccchHHHHHH
Q 004491 659 TTSGSIG-AKTALSLDESVDRVQAIADAAHRINPDAIVLCHGGPISSPSEAEFILKRTKGVHGFYGASSMERLPVEQAIT 737 (749)
Q Consensus 659 T~gG~~G-a~~~~sl~~~~~~~~~i~~aa~~~~pdii~l~hGGPi~~p~d~~~~l~~~~~~~Gf~g~Ss~ERlP~E~ai~ 737 (749)
| ++.-| ......++. ++++. .++=+++=| .| +|+.+..+++. ...+|.--.|.+|+=|=.+-..
T Consensus 130 ~-~~~~Gg~g~~~~~~~----l~~~~-------~~~PvilaG-GI-~~~Nv~~~i~~-~~~~gvdv~S~ie~~pg~kd~~ 194 (203)
T cd00405 130 S-GGGGGGTGKTFDWSL----LRGLA-------SRKPVILAG-GL-TPDNVAEAIRL-VRPYGVDVSSGVETSPGIKDPE 194 (203)
T ss_pred C-CCCCCCCcceEChHH----hhccc-------cCCCEEEEC-CC-ChHHHHHHHHh-cCCCEEEcCCcccCCCCCcCHH
Confidence 2 22111 222334332 22221 122233334 46 99999999976 4368999999999877654433
No 320
>COG0439 AccC Biotin carboxylase [Lipid metabolism]
Probab=74.96 E-value=33 Score=39.79 Aligned_cols=141 Identities=18% Similarity=0.234 Sum_probs=108.2
Q ss_pred HHHHhhhhhcCCCCCCceEEeeccCCCCCCHHHHHHHHHHcCccceecCCcccccchhhhhhhhhcCCchH---------
Q 004491 545 VVLEMANEVLPVVKEVPVLAGVCGTDPFRRVDYFLKQLESIGFFGVQNFPTVGLFDGNFRQNLEETGMGYG--------- 615 (749)
Q Consensus 545 iv~e~~~eilp~v~~tPViaGv~atDP~~~~~~~l~~lk~~Gf~GV~NfPTvgliDG~fR~~LEe~G~gy~--------- 615 (749)
....++.|-.++= | --..|.|.++++.+..-+..|-.-|-=..++--.+-.|-+.+++.|++|-
T Consensus 40 ~~~~~adeav~i~---~----~~~~~syl~i~~ii~~a~~~gadai~pGygflsen~~fae~~~~~gl~fiGP~~~~i~~ 112 (449)
T COG0439 40 LHVALADEAVCIG---P----APSADSYLNIDAIIAAAEETGADAIHPGYGFLSENAAFAEACAEAGLTFIGPSAEAIRR 112 (449)
T ss_pred hhhhhCceEEEcC---C----ccchhhhhhHHHHHHHHHhcCCceEcccchhhhCCHHHHHHHHHcCCeeeCcCHHHHHH
Confidence 4566777755542 2 45678899999999999999988886666655788999999999999872
Q ss_pred --HHHHHHHHHHHcCCcccccc----cCHHHHHHHH-hccCcEEEeccCCCcccccccccccCHHHHHHHHHHHHHHHHH
Q 004491 616 --LEVEMIDKAHKMGLLTTPYA----FNEGEAVKMA-KAGADIIVAHMGLTTSGSIGAKTALSLDESVDRVQAIADAAHR 688 (749)
Q Consensus 616 --~EVemi~~A~~~gl~T~~yv----f~~eqa~~Ma-~AGaDiiv~h~GlT~gG~~Ga~~~~sl~~~~~~~~~i~~aa~~ 688 (749)
.=+.|-+.+++.|+..+|+. -+.||+.+.+ +.|-.||+==.. -||..|.+...+.++..+..+.+...++.
T Consensus 113 mgdK~~ar~~~~~aGVP~vpgs~~~~~~~ee~~~~a~~iGyPVivKa~~--GgGg~G~r~v~~~~el~~a~~~~~~ea~~ 190 (449)
T COG0439 113 MGDKITARRLMAKAGVPVVPGSDGAVADNEEALAIAEEIGYPVIVKAAA--GGGGRGMRVVRNEEELEAAFEAARGEAEA 190 (449)
T ss_pred hhhHHHHHHHHHHcCCCcCCCCCCCcCCHHHHHHHHHHcCCCEEEEECC--CCCcccEEEECCHHHHHHHHHHHHHHHHH
Confidence 34788899999999999998 5667888875 899888774322 38899988888877777777777777776
Q ss_pred h--CCCeE
Q 004491 689 I--NPDAI 694 (749)
Q Consensus 689 ~--~pdii 694 (749)
. +|.++
T Consensus 191 ~fg~~~v~ 198 (449)
T COG0439 191 AFGNPRVY 198 (449)
T ss_pred hcCCCcEE
Confidence 4 55443
No 321
>TIGR01305 GMP_reduct_1 guanosine monophosphate reductase, eukaryotic. A deep split separates two families of GMP reductase. This family includes both eukaryotic and some proteobacterial sequences, while the other family contains other bacterial sequences.
Probab=74.87 E-value=31 Score=38.80 Aligned_cols=125 Identities=12% Similarity=0.089 Sum_probs=71.9
Q ss_pred CCceEEeeccCCCCCCHHHHHHHHHHcCccceecCCcccccchhhhhhhhhcCCchHHHHHHHHHHHHcCCcccccc---
Q 004491 559 EVPVLAGVCGTDPFRRVDYFLKQLESIGFFGVQNFPTVGLFDGNFRQNLEETGMGYGLEVEMIDKAHKMGLLTTPYA--- 635 (749)
Q Consensus 559 ~tPViaGv~atDP~~~~~~~l~~lk~~Gf~GV~NfPTvgliDG~fR~~LEe~G~gy~~EVemi~~A~~~gl~T~~yv--- 635 (749)
.+|||+.=. ++.--.+.-..|-+.|+-||.-= -+..+.-+++++..++--...+...
T Consensus 45 ~iPii~AnM---dtv~~~~mA~~la~~g~~~~iHk-----------------~~~~e~~~~~v~~~~~~~~~~~~vsvG~ 104 (343)
T TIGR01305 45 GVPIIAANM---DTVGTFEMAAALSQHSIFTAIHK-----------------HYSVDEWKAFATNSSPDCLQNVAVSSGS 104 (343)
T ss_pred CCceEecCC---CcccCHHHHHHHHHCCCeEEEee-----------------CCCHHHHHHHHHhhcccccceEEEEecc
Confidence 578876422 22333334444555555555410 0234555777766443222222112
Q ss_pred --cCHHHHHHHHhcc--CcEEEeccCCCcccccccccccCHHHHHHHHHHHHHHHHHhCCCeEEEEccCCCCCHHHHHHH
Q 004491 636 --FNEGEAVKMAKAG--ADIIVAHMGLTTSGSIGAKTALSLDESVDRVQAIADAAHRINPDAIVLCHGGPISSPSEAEFI 711 (749)
Q Consensus 636 --f~~eqa~~Ma~AG--aDiiv~h~GlT~gG~~Ga~~~~sl~~~~~~~~~i~~aa~~~~pdii~l~hGGPi~~p~d~~~~ 711 (749)
-+.|.++++.+|| +|+||+-.- .|. -+..++.++.| ++.-|+..++ .|.|.||++++.+
T Consensus 105 ~~~d~er~~~L~~a~~~~d~iviD~A------hGh-----s~~~i~~ik~i----r~~~p~~~vi--aGNV~T~e~a~~L 167 (343)
T TIGR01305 105 SDNDLEKMTSILEAVPQLKFICLDVA------NGY-----SEHFVEFVKLV----REAFPEHTIM--AGNVVTGEMVEEL 167 (343)
T ss_pred CHHHHHHHHHHHhcCCCCCEEEEECC------CCc-----HHHHHHHHHHH----HhhCCCCeEE--EecccCHHHHHHH
Confidence 2347788999995 999998643 111 12233333333 4455777777 7999999999999
Q ss_pred HhhCCCccEEe
Q 004491 712 LKRTKGVHGFY 722 (749)
Q Consensus 712 l~~~~~~~Gf~ 722 (749)
++ .++||..
T Consensus 168 i~--aGAD~ik 176 (343)
T TIGR01305 168 IL--SGADIVK 176 (343)
T ss_pred HH--cCCCEEE
Confidence 95 4789984
No 322
>cd01545 PBP1_SalR Ligand-binding domain of DNA transcription repressor SalR, a member of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressor SalR, a member of the LacI-GalR family of bacterial transcription regulators. The SalR binds to glucose based compound Salicin which is chemically related to aspirin. The ligand-binding of SalR is structurally homologous to the periplasmic sugar-binding domain of ABC-transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand bind
Probab=74.79 E-value=97 Score=31.10 Aligned_cols=183 Identities=17% Similarity=0.196 Sum_probs=92.3
Q ss_pred cCcccEEEEecCcchhHHHHHHhh-hCCCCCCeeEEecccCCCCCCCcccCCceeeecccccccCcHHHHHHHHHHHHHH
Q 004491 111 DQVLAGVIGLGGSGGTSLISSAFK-SLPIGLPKVIVSTVASGQTEPYIGTSDLILIPSVVDVCGINSVSRVVFANAGAAF 189 (749)
Q Consensus 111 ~g~i~GVIglGGs~GT~lat~aMr-~LPiG~PKlmVSTmASGd~~pyVG~sDI~mm~SVvDIaGLN~Isr~VL~NAA~Ai 189 (749)
..+++|+|......-+ ...++ ...-|+|-+.+.+-..++.-+||+ .|. ..++..
T Consensus 54 ~~~vdgiii~~~~~~~---~~~~~~~~~~~ipvv~i~~~~~~~~~~~V~---------------~d~-------~~~g~~ 108 (270)
T cd01545 54 RSRVDGVILTPPLSDN---PELLDLLDEAGVPYVRIAPGTPDPDSPCVR---------------IDD-------RAAARE 108 (270)
T ss_pred HCCCCEEEEeCCCCCc---cHHHHHHHhcCCCEEEEecCCCCCCCCeEE---------------ecc-------HHHHHH
Confidence 3689999999876322 23344 345789999986543332223332 221 122222
Q ss_pred hccccchhhhccccCCCCCCcEEEEe--ccCCch--HHHHHHHHHHHhcCccE---EEEecC---CCchHHHHHHHHc-C
Q 004491 190 AGMVVGRLERLRDFGASKEKCTVGIT--MFGVTT--PCVNAVKERLEKEGYET---MVFHAT---GVGGRAMEALVKE-G 258 (749)
Q Consensus 190 aGMv~~~~~~~~~~~~~~~kp~IgiT--MFGvTT--p~V~~~r~~Le~~GyEv---lVFHAT---G~GGrAME~Li~e-G 258 (749)
++- +... .+...|++- .-+.++ ...+..++.+++.|.++ .+++.. ..+-.+++++.++ .
T Consensus 109 a~~---~l~~-------~g~~~i~~i~~~~~~~~~~~R~~Gf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 178 (270)
T cd01545 109 MTR---HLID-------LGHRRIAFIAGPPDHRASAERLEGYRDALAEAGLPLDPELVAQGDFTFESGLEAAEALLALPD 178 (270)
T ss_pred HHH---HHHH-------CCCceEEEEeCCCCchhHHHHHHHHHHHHHHcCCCCChhhEEeCCCChhhHHHHHHHHHhCCC
Confidence 221 0100 112234432 122211 22345566777777665 233322 2234678888765 4
Q ss_pred CceEEEeCchhhhhhhhhCCccCCCCchhhhhhhcC--CCeEEecCccccccCCCCCCCCccccCCceeeecCcceEEec
Q 004491 259 FIQGVLDITTTEVADYVVGGVMACDSSRFDATIEKK--IPLVLSVGALDMVNFGAKDTIPSKFQRRKIHVHNQQVSLMRT 336 (749)
Q Consensus 259 ~~~gVlDlTttElaD~l~GGv~saGp~RL~AA~~~G--IPqVVspGalDmVnFG~~dtvPe~f~~R~~~~HNp~vTlmRT 336 (749)
.++|++ .+..+++- |+ +.+.-+.| +|.=++.-+.|...+... ..|.+|.+..
T Consensus 179 ~~~~i~-~~~d~~a~----~~-------~~~~~~~g~~~p~~i~vig~d~~~~~~~--------------~~~~~~ti~~ 232 (270)
T cd01545 179 RPTAIF-ASNDDMAA----GV-------LAVAHRRGLRVPDDLSVVGFDDTPIATT--------------IWPPLTTVRQ 232 (270)
T ss_pred CCCEEE-EcCcHHHH----HH-------HHHHHHcCCCCCCceEEEEECChhHHhc--------------CCCCceEeeC
Confidence 578887 22223332 22 33444445 577666666666554211 1446788889
Q ss_pred CHHHHHH-HHHHHHHHHcc
Q 004491 337 TVDENKK-FAAFIANKLNQ 354 (749)
Q Consensus 337 t~eE~~~-ig~~iA~kLn~ 354 (749)
.+++.-+ ..+.+.+.|+.
T Consensus 233 ~~~~~g~~a~~~l~~~l~~ 251 (270)
T cd01545 233 PIAEMARAAAELLIARLRG 251 (270)
T ss_pred cHHHHHHHHHHHHHHHhcC
Confidence 9888544 44445555554
No 323
>PRK13957 indole-3-glycerol-phosphate synthase; Provisional
Probab=74.62 E-value=56 Score=35.15 Aligned_cols=127 Identities=18% Similarity=0.241 Sum_probs=93.2
Q ss_pred CCceEEeeccCCCC-------CCHHHHHHHHHHcCccceecCCcccccchhhhhhhhhcCCchHHHHHHHHHHHHc---C
Q 004491 559 EVPVLAGVCGTDPF-------RRVDYFLKQLESIGFFGVQNFPTVGLFDGNFRQNLEETGMGYGLEVEMIDKAHKM---G 628 (749)
Q Consensus 559 ~tPViaGv~atDP~-------~~~~~~l~~lk~~Gf~GV~NfPTvgliDG~fR~~LEe~G~gy~~EVemi~~A~~~---g 628 (749)
..+||+=+--..|. .+...+.++..+.|.++| .-+-|+. -.|++ .|.|+.+++. =
T Consensus 40 ~~~vIaEiKr~SPs~G~i~~~~d~~~~A~~y~~~GA~aI-----SVlTe~~--------~F~Gs--~~~l~~v~~~v~~P 104 (247)
T PRK13957 40 SFSIIAECKRKSPSAGELRADYHPVQIAKTYETLGASAI-----SVLTDQS--------YFGGS--LEDLKSVSSELKIP 104 (247)
T ss_pred CCeEEEEEecCCCCCCCcCCCCCHHHHHHHHHHCCCcEE-----EEEcCCC--------cCCCC--HHHHHHHHHhcCCC
Confidence 36788777776666 356678899999999998 3344443 22333 2566666654 3
Q ss_pred CcccccccCHHHHHHHHhccCcEEEeccCCCcccccccccccCHHHHHHHHHHHHHHHHHhCCCeEEEEccCCCCCHHHH
Q 004491 629 LLTTPYAFNEGEAVKMAKAGADIIVAHMGLTTSGSIGAKTALSLDESVDRVQAIADAAHRINPDAIVLCHGGPISSPSEA 708 (749)
Q Consensus 629 l~T~~yvf~~eqa~~Ma~AGaDiiv~h~GlT~gG~~Ga~~~~sl~~~~~~~~~i~~aa~~~~pdii~l~hGGPi~~p~d~ 708 (749)
++-=-|++++.|..+-..+|||.|..++.+ ++- +..+++++.|++..=+++|=+| +.+|+
T Consensus 105 vL~KDFIid~~QI~ea~~~GADavLLI~~~-----------L~~----~~l~~l~~~a~~lGle~LVEVh-----~~~El 164 (247)
T PRK13957 105 VLRKDFILDEIQIREARAFGASAILLIVRI-----------LTP----SQIKSFLKHASSLGMDVLVEVH-----TEDEA 164 (247)
T ss_pred EEeccccCCHHHHHHHHHcCCCEEEeEHhh-----------CCH----HHHHHHHHHHHHcCCceEEEEC-----CHHHH
Confidence 445558999999999999999999998763 332 2567889999999999999999 89999
Q ss_pred HHHHhhCCCccE
Q 004491 709 EFILKRTKGVHG 720 (749)
Q Consensus 709 ~~~l~~~~~~~G 720 (749)
+..++--..+-|
T Consensus 165 ~~a~~~ga~iiG 176 (247)
T PRK13957 165 KLALDCGAEIIG 176 (247)
T ss_pred HHHHhCCCCEEE
Confidence 999975454544
No 324
>TIGR03550 F420_cofG 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, CofG subunit. This model represents either a subunit or a domain, depending on whether or not the genes are fused, of a bifunctional protein that completes the synthesis of 7,8-didemethyl-8-hydroxy-5-deazariboflavin, or FO. FO is the chromophore of coenzyme F(420), involved in methanogenesis in methanogenic archaea but found in certain other lineages as well. The chromophore also occurs as a cofactor in DNA photolyases in Cyanobacteria.
Probab=74.57 E-value=22 Score=38.88 Aligned_cols=144 Identities=16% Similarity=0.128 Sum_probs=73.2
Q ss_pred CchHHHHHhhhhhcCCCCCCceEEeeccCCCCCCHHHHHHHHHHcCccceecCCcccccchhhhhhhhhcCCchHHHHHH
Q 004491 541 DANAVVLEMANEVLPVVKEVPVLAGVCGTDPFRRVDYFLKQLESIGFFGVQNFPTVGLFDGNFRQNLEETGMGYGLEVEM 620 (749)
Q Consensus 541 daN~iv~e~~~eilp~v~~tPViaGv~atDP~~~~~~~l~~lk~~Gf~GV~NfPTvgliDG~fR~~LEe~G~gy~~EVem 620 (749)
-.-+-|++.+++.... . .--+.=+.|.+|....+.+++.|++.||.-+ +..+---++...+++
T Consensus 35 l~~eeI~~~a~~~~~~-G-~~ei~l~~G~~p~~~~~~~~~~l~~~~~~~~-----~~~~~~~~~~i~~e~---------- 97 (322)
T TIGR03550 35 LSPEEVLEILRKGAAA-G-CTEALFTFGEKPEERYPEAREWLAEMGYDST-----LEYLRELCELALEET---------- 97 (322)
T ss_pred CCHHHHHHHHHHHHHC-C-CCEEEEecCCCccccHHHHHHHHHhcCCccH-----HHHHHHHHHHHHHhc----------
Confidence 3445555555443332 1 1213335678888888899999999887622 111111122222222
Q ss_pred HHHHHHcCCccc--ccccCHHHHHHHHhccCcEEEeccCCCcccc-----ccccc--ccCHHHHHHHHHHHHHHHHHhCC
Q 004491 621 IDKAHKMGLLTT--PYAFNEGEAVKMAKAGADIIVAHMGLTTSGS-----IGAKT--ALSLDESVDRVQAIADAAHRINP 691 (749)
Q Consensus 621 i~~A~~~gl~T~--~yvf~~eqa~~Ma~AGaDiiv~h~GlT~gG~-----~Ga~~--~~sl~~~~~~~~~i~~aa~~~~p 691 (749)
+++.. +=.++.++.+.|.+||+++ |+.+-+.-. +.... ..+.++-.+.++...++--+++-
T Consensus 98 -------~~~~~~~~g~lt~e~l~~Lk~aG~~~---~~~~Et~~~~l~~~~~~~~~p~k~~~~~l~~i~~a~~~Gi~~~s 167 (322)
T TIGR03550 98 -------GLLPHTNPGVMSRDELARLKPVNASM---GLMLETTSERLCKGEAHYGSPGKDPAVRLETIEDAGRLKIPFTT 167 (322)
T ss_pred -------CCccccCCCCCCHHHHHHHHhhCCCC---CcchhhhccccccccccCCCCCCCHHHHHHHHHHHHHcCCCccc
Confidence 33222 2248899999999999873 444433211 11100 11334333333333323333444
Q ss_pred CeEEEEccCCCCCHHHHHHHHhhC
Q 004491 692 DAIVLCHGGPISSPSEAEFILKRT 715 (749)
Q Consensus 692 dii~l~hGGPi~~p~d~~~~l~~~ 715 (749)
.+| +| +..+++|....+...
T Consensus 168 ~~i---~G-~gEt~ed~~~~l~~l 187 (322)
T TIGR03550 168 GIL---IG-IGETREERAESLLAI 187 (322)
T ss_pred eee---Ee-CCCCHHHHHHHHHHH
Confidence 443 33 678999988775443
No 325
>cd07941 DRE_TIM_LeuA3 Desulfobacterium autotrophicum LeuA3 and related proteins, N-terminal catalytic TIM barrel domain. Desulfobacterium autotrophicum LeuA3 is sequence-similar to alpha-isopropylmalate synthase (LeuA) but its exact function is unknown. Members of this family have an N-terminal TIM barrel domain that belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of in
Probab=74.46 E-value=72 Score=34.17 Aligned_cols=136 Identities=14% Similarity=0.173 Sum_probs=83.1
Q ss_pred CHHHHHHHHHHcCcccee-cCCcccccchhhhhhhhhcCCchHHHHHHHHHHHHcCCc-c--ccc---------ccCHHH
Q 004491 574 RVDYFLKQLESIGFFGVQ-NFPTVGLFDGNFRQNLEETGMGYGLEVEMIDKAHKMGLL-T--TPY---------AFNEGE 640 (749)
Q Consensus 574 ~~~~~l~~lk~~Gf~GV~-NfPTvgliDG~fR~~LEe~G~gy~~EVemi~~A~~~gl~-T--~~y---------vf~~eq 640 (749)
....+++.|.+.||.=|- =||.++ .++++.++..+++.+- + .++ +-+...
T Consensus 21 ~k~~i~~~L~~~Gv~~IE~G~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 83 (273)
T cd07941 21 DKLRIARKLDELGVDYIEGGWPGSN-----------------PKDTEFFARAKKLKLKHAKLAAFGSTRRAGVKAEEDPN 83 (273)
T ss_pred HHHHHHHHHHHcCCCEEEecCCcCC-----------------HHHHHHHHHHHHcCCCCcEEEEEecccccCCCccchHH
Confidence 456788899999988776 367554 4456666666555431 1 111 223346
Q ss_pred HHHHHhccCcEEEeccCCCcccc-cccccccCHHHHHHHHHHHHHHHHHhCCCeEEE---EccCCCCCHHHHHHHHhhC-
Q 004491 641 AVKMAKAGADIIVAHMGLTTSGS-IGAKTALSLDESVDRVQAIADAAHRINPDAIVL---CHGGPISSPSEAEFILKRT- 715 (749)
Q Consensus 641 a~~Ma~AGaDiiv~h~GlT~gG~-~Ga~~~~sl~~~~~~~~~i~~aa~~~~pdii~l---~hGGPi~~p~d~~~~l~~~- 715 (749)
.+.+.++|+|.| |+-..++.. +-.+-..|.++.++.+.++.+.+++....+.+- ..-++-.+|+.+..+++..
T Consensus 84 ~~~a~~~g~~~i--~i~~~~sd~~~~~~~~~~~~~~~~~~~~~i~~ak~~G~~v~~~~~~~~d~~~~~~~~~~~~~~~~~ 161 (273)
T cd07941 84 LQALLEAGTPVV--TIFGKSWDLHVTEALGTTLEENLAMIRDSVAYLKSHGREVIFDAEHFFDGYKANPEYALATLKAAA 161 (273)
T ss_pred HHHHHhCCCCEE--EEEEcCCHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCCeEEEeEEeccccCCCCHHHHHHHHHHHH
Confidence 677889999985 443333322 112234678899999999999999988766551 1245667888876666432
Q ss_pred -CCccEEecCcccc
Q 004491 716 -KGVHGFYGASSME 728 (749)
Q Consensus 716 -~~~~Gf~g~Ss~E 728 (749)
.+++.++=.-+.-
T Consensus 162 ~~g~~~i~l~DT~G 175 (273)
T cd07941 162 EAGADWLVLCDTNG 175 (273)
T ss_pred hCCCCEEEEecCCC
Confidence 3455555443333
No 326
>TIGR01769 GGGP geranylgeranylglyceryl phosphate synthase. This model represents geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The active enzyme is reported to be a homopentamer in Methanobacterium thermoautotrophicum but is reported to be a homodimer in Thermoplasma acidophilum.
Probab=74.14 E-value=79 Score=33.06 Aligned_cols=140 Identities=22% Similarity=0.221 Sum_probs=70.6
Q ss_pred eccCC--CCCCHHHHHHHHHHcCccceecCCcccc-----cchhhhhhh-hhcCCc--hHHHHHHHHHHHHcCC--cccc
Q 004491 566 VCGTD--PFRRVDYFLKQLESIGFFGVQNFPTVGL-----FDGNFRQNL-EETGMG--YGLEVEMIDKAHKMGL--LTTP 633 (749)
Q Consensus 566 v~atD--P~~~~~~~l~~lk~~Gf~GV~NfPTvgl-----iDG~fR~~L-Ee~G~g--y~~EVemi~~A~~~gl--~T~~ 633 (749)
|.+++ =..+++++++.+|+..=-=|.=||.-.- .|.-|-=.| -...-- ....++.+-..++.|+ +.++
T Consensus 30 VGGS~gvt~~~~~~~v~~ik~~~~lPvilfp~~~~~i~~~aD~~~~~sllns~~~~~i~g~~~~~~~~~~~~~~e~ip~g 109 (205)
T TIGR01769 30 VGGSLGIVESNLDQTVKKIKKITNLPVILFPGNVNGLSRYADAVFFMSLLNSADTYFIVGAQILGAITILKLNLEVIPMA 109 (205)
T ss_pred EcCcCCCCHHHHHHHHHHHHhhcCCCEEEECCCccccCcCCCEEEEEEeecCCCcchhhhHHHHHHHHHHHcCCcccceE
Confidence 45666 3366788888888853011122333221 222111111 111111 2345555555566665 4445
Q ss_pred cc-------------------cCHHHHHHHHh----ccCcEEEeccCCCcccccccccccCHHHHHHHHHHHHHHHHHhC
Q 004491 634 YA-------------------FNEGEAVKMAK----AGADIIVAHMGLTTSGSIGAKTALSLDESVDRVQAIADAAHRIN 690 (749)
Q Consensus 634 yv-------------------f~~eqa~~Ma~----AGaDiiv~h~GlT~gG~~Ga~~~~sl~~~~~~~~~i~~aa~~~~ 690 (749)
|+ -++|++.+-+. .|++.|-.--+ . |+....+ .+.++++ ++.-
T Consensus 110 Yiv~~~~~~v~~v~~a~~ip~~~~e~~~~~a~aa~~~G~~~i~Le~~---s---Ga~~~v~----~e~i~~V----k~~~ 175 (205)
T TIGR01769 110 YLIVGPGGAVGYVGKAREIPYNKPEIAAAYCLAAKYFGMKWVYLEAG---S---GASYPVN----PETISLV----KKAS 175 (205)
T ss_pred EEEECCCCceeeecCcccCCCCCHHHHHHHHHHHHHcCCCEEEEEcC---C---CCCCCCC----HHHHHHH----HHhh
Confidence 51 35666666554 37776655221 2 2222233 2233333 3322
Q ss_pred CCeEEEEccCCCCCHHHHHHHHhhCCCccEEec
Q 004491 691 PDAIVLCHGGPISSPSEAEFILKRTKGVHGFYG 723 (749)
Q Consensus 691 pdii~l~hGGPi~~p~d~~~~l~~~~~~~Gf~g 723 (749)
. +-++.||-|.++++++.+++. +++|.+-
T Consensus 176 ~--~Pv~vGGGIrs~e~a~~l~~~--GAD~VVV 204 (205)
T TIGR01769 176 G--IPLIVGGGIRSPEIAYEIVLA--GADAIVT 204 (205)
T ss_pred C--CCEEEeCCCCCHHHHHHHHHc--CCCEEEe
Confidence 2 467789999999999999854 4677653
No 327
>cd04733 OYE_like_2_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 2. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=74.11 E-value=20 Score=39.33 Aligned_cols=134 Identities=23% Similarity=0.300 Sum_probs=68.6
Q ss_pred HHHHHcCcccee-cC-----------CcccccchhhhhhhhhcCCchHHH-HHHHHHHHHcCC-cccc--------cccC
Q 004491 580 KQLESIGFFGVQ-NF-----------PTVGLFDGNFRQNLEETGMGYGLE-VEMIDKAHKMGL-LTTP--------YAFN 637 (749)
Q Consensus 580 ~~lk~~Gf~GV~-Nf-----------PTvgliDG~fR~~LEe~G~gy~~E-Vemi~~A~~~gl-~T~~--------yvf~ 637 (749)
++.++.||.||. |. |..=--+..|.-.|| .-+-|-.| |+.||+|-..++ +.+= --++
T Consensus 156 ~ra~~aGfDgVeih~a~gyLl~qFlsp~~N~R~D~yGGsle-nR~rf~~EiI~aIR~avG~d~~v~vris~~~~~~~g~~ 234 (338)
T cd04733 156 RLAQEAGFDGVQIHAAHGYLLSQFLSPLTNKRTDEYGGSLE-NRARLLLEIYDAIRAAVGPGFPVGIKLNSADFQRGGFT 234 (338)
T ss_pred HHHHHcCCCEEEEchhhhhHHHHhcCCcCCCCCccCCCCHH-HHHHHHHHHHHHHHHHcCCCCeEEEEEcHHHcCCCCCC
Confidence 367889999994 42 444333333434443 23445444 355665543343 2211 1257
Q ss_pred HHHHHH----HHhccCcEEEeccCCCcccccc-cccccC-HHHH--HHHHHHHHHHHHHhCCCeEEEEccCCCCCHHHHH
Q 004491 638 EGEAVK----MAKAGADIIVAHMGLTTSGSIG-AKTALS-LDES--VDRVQAIADAAHRINPDAIVLCHGGPISSPSEAE 709 (749)
Q Consensus 638 ~eqa~~----Ma~AGaDiiv~h~GlT~gG~~G-a~~~~s-l~~~--~~~~~~i~~aa~~~~pdii~l~hGGPi~~p~d~~ 709 (749)
.+|+.+ +.++|+|.|-+|.|.-..-... ...... ..+. ...+++|.++ + ++- ++-+|-|.+|++++
T Consensus 235 ~eea~~ia~~Le~~Gvd~iev~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~---v--~iP-Vi~~G~i~t~~~a~ 308 (338)
T cd04733 235 EEDALEVVEALEEAGVDLVELSGGTYESPAMAGAKKESTIAREAYFLEFAEKIRKV---T--KTP-LMVTGGFRTRAAME 308 (338)
T ss_pred HHHHHHHHHHHHHcCCCEEEecCCCCCCccccccccCCccccchhhHHHHHHHHHH---c--CCC-EEEeCCCCCHHHHH
Confidence 777644 4588999999998742111000 000000 0000 1222233222 2 333 34467799999999
Q ss_pred HHHhhCCCccEE
Q 004491 710 FILKRTKGVHGF 721 (749)
Q Consensus 710 ~~l~~~~~~~Gf 721 (749)
.+++. ..+|..
T Consensus 309 ~~l~~-g~aD~V 319 (338)
T cd04733 309 QALAS-GAVDGI 319 (338)
T ss_pred HHHHc-CCCCee
Confidence 99977 446654
No 328
>cd02803 OYE_like_FMN_family Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=74.04 E-value=35 Score=36.80 Aligned_cols=85 Identities=20% Similarity=0.106 Sum_probs=46.8
Q ss_pred cCHHHH----HHHHhccCcEEEeccCCCccccccccc-ccCHHHHHHHHHHHHHHHHHhCCCeEEEEccCCCCCHHHHHH
Q 004491 636 FNEGEA----VKMAKAGADIIVAHMGLTTSGSIGAKT-ALSLDESVDRVQAIADAAHRINPDAIVLCHGGPISSPSEAEF 710 (749)
Q Consensus 636 f~~eqa----~~Ma~AGaDiiv~h~GlT~gG~~Ga~~-~~sl~~~~~~~~~i~~aa~~~~pdii~l~hGGPi~~p~d~~~ 710 (749)
++.+|+ +.+.++|+|.|.+|.|.......-... ...-....+.++.|.+.. ++-| +-+|-|.+|++++.
T Consensus 225 ~~~~e~~~la~~l~~~G~d~i~vs~g~~~~~~~~~~~~~~~~~~~~~~~~~ir~~~-----~iPV-i~~Ggi~t~~~a~~ 298 (327)
T cd02803 225 LTLEEAIEIAKALEEAGVDALHVSGGSYESPPPIIPPPYVPEGYFLELAEKIKKAV-----KIPV-IAVGGIRDPEVAEE 298 (327)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEeCCCCCcccccccCCCCCCcchhHHHHHHHHHHC-----CCCE-EEeCCCCCHHHHHH
Confidence 456664 566789999999998754321110000 000112223334443332 2333 44566999999999
Q ss_pred HHhhCCCccEEecCccc
Q 004491 711 ILKRTKGVHGFYGASSM 727 (749)
Q Consensus 711 ~l~~~~~~~Gf~g~Ss~ 727 (749)
+++. .++|..--++.+
T Consensus 299 ~l~~-g~aD~V~igR~~ 314 (327)
T cd02803 299 ILAE-GKADLVALGRAL 314 (327)
T ss_pred HHHC-CCCCeeeecHHH
Confidence 9976 456655444443
No 329
>PRK07114 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=73.91 E-value=91 Score=33.01 Aligned_cols=199 Identities=19% Similarity=0.172 Sum_probs=124.0
Q ss_pred HhcccCCCceEEecCCCCCCHHHHHHHHHHHHHHHhccccccCCccccccccccccccccccCCCcccccCCCCCCCCCC
Q 004491 393 TLIQTNEDRQVKVYPHNINDSEFADALVDSFLEISGKNLMAFSSAHHVSCERHEDSVSNIYSSSHGTICYSPSNFPDARP 472 (749)
Q Consensus 393 ~~l~~~~~~~v~~~d~hINDp~FA~a~a~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 472 (749)
+.|.+++.+.|++ .+|++=+..++++|.+-=-+ .-+..|.+|.-+
T Consensus 10 ~~l~~~~vi~Vvr----~~~~~~a~~~~~al~~gGi~--------------------------~iEiT~~tp~a~----- 54 (222)
T PRK07114 10 TAMKATGMVPVFY----HADVEVAKKVIKACYDGGAR--------------------------VFEFTNRGDFAH----- 54 (222)
T ss_pred HHHHhCCEEEEEE----cCCHHHHHHHHHHHHHCCCC--------------------------EEEEeCCCCcHH-----
Confidence 4444456666764 55888888888877652000 112234444322
Q ss_pred cccccHHHHHHHHHHHhhcCCCeEEeccccchh---hhhhhhcCCcEEEEeccccccccCCccccccccccCchHHHHHh
Q 004491 473 ETLQRTQAILSKLKYQIDKGLPIIGAGAGTGIS---AKFEEAGGVDLIVLYNSGRFRMAGRGSLAGLLPFADANAVVLEM 549 (749)
Q Consensus 473 ~~~~~r~~il~~L~~~i~~~~piig~gaGtGls---Ak~ae~gGaDli~~ynsGrfR~~G~~SlagllpygdaN~iv~e~ 549 (749)
+.++.|++++++.-|=+=+||||=++ ++.+.+.||+||| =-+.|.-|.+.
T Consensus 55 -------~~i~~l~~~~~~~~p~~~vGaGTVl~~e~a~~a~~aGA~FiV--------------------sP~~~~~v~~~ 107 (222)
T PRK07114 55 -------EVFAELVKYAAKELPGMILGVGSIVDAATAALYIQLGANFIV--------------------TPLFNPDIAKV 107 (222)
T ss_pred -------HHHHHHHHHHHhhCCCeEEeeEeCcCHHHHHHHHHcCCCEEE--------------------CCCCCHHHHHH
Confidence 47788888887766655577777666 4566789999999 23578889999
Q ss_pred hhhhcCCCCCCceEEeeccCCCCCCHHHHHHHHHHcCccceecCCcccccchhhhhhhhhcCCchHHHHHHHHHHHHcCC
Q 004491 550 ANEVLPVVKEVPVLAGVCGTDPFRRVDYFLKQLESIGFFGVQNFPTVGLFDGNFRQNLEETGMGYGLEVEMIDKAHKMGL 629 (749)
Q Consensus 550 ~~eilp~v~~tPViaGv~atDP~~~~~~~l~~lk~~Gf~GV~NfPTvgliDG~fR~~LEe~G~gy~~EVemi~~A~~~gl 629 (749)
+++ .++|++-|+.- ..=+.+..++|+.-|-=||-- .. |..|=+.+. -=|
T Consensus 108 ~~~-----~~i~~iPG~~T-------psEi~~A~~~Ga~~vKlFPA~-~~-----------G~~~ikal~-------~p~ 156 (222)
T PRK07114 108 CNR-----RKVPYSPGCGS-------LSEIGYAEELGCEIVKLFPGS-VY-----------GPGFVKAIK-------GPM 156 (222)
T ss_pred HHH-----cCCCEeCCCCC-------HHHHHHHHHCCCCEEEECccc-cc-----------CHHHHHHHh-------ccC
Confidence 976 57888888752 334667889999999999932 11 223322221 112
Q ss_pred ccccccc----CH--HHHHHHHhccCcEEEeccCCCcccccccccccCHHHHHHHHHHHHH
Q 004491 630 LTTPYAF----NE--GEAVKMAKAGADIIVAHMGLTTSGSIGAKTALSLDESVDRVQAIAD 684 (749)
Q Consensus 630 ~T~~yvf----~~--eqa~~Ma~AGaDiiv~h~GlT~gG~~Ga~~~~sl~~~~~~~~~i~~ 684 (749)
-.++|+- |+ +......++|+..++.-=.|+....+..+....+.+-++...++++
T Consensus 157 p~i~~~ptGGV~~~~~n~~~yl~aGa~avg~Gs~L~~~~~~~~~~~~~i~~~a~~~~~~~~ 217 (222)
T PRK07114 157 PWTKIMPTGGVEPTEENLKKWFGAGVTCVGMGSKLIPKEALAAKDYAGIEQKVREALAIIK 217 (222)
T ss_pred CCCeEEeCCCCCcchhcHHHHHhCCCEEEEEChhhcCccccccccHHHHHHHHHHHHHHHH
Confidence 2233432 33 7888999999998887766765555544444445554444433433
No 330
>PRK04180 pyridoxal biosynthesis lyase PdxS; Provisional
Probab=73.84 E-value=74 Score=35.19 Aligned_cols=165 Identities=23% Similarity=0.350 Sum_probs=96.7
Q ss_pred HHHHHHHHHHHhhcCCCeEEe-ccccchhhhhhhhcCCcEEEEeccccccccCCccccccccccCchHHHHHhhhhhcCC
Q 004491 478 TQAILSKLKYQIDKGLPIIGA-GAGTGISAKFEEAGGVDLIVLYNSGRFRMAGRGSLAGLLPFADANAVVLEMANEVLPV 556 (749)
Q Consensus 478 r~~il~~L~~~i~~~~piig~-gaGtGlsAk~ae~gGaDli~~ynsGrfR~~G~~SlagllpygdaN~iv~e~~~eilp~ 556 (749)
--+.++.+|+.+ ..||+|- =.|-=--|+.-++.|+|+| =-|.|.|- +++++-..=++.
T Consensus 62 ~p~~I~aIk~~V--~iPVigk~Righ~~Ea~~L~~~GvDiI--D~Te~lrp--------------ad~~~~~~K~~f--- 120 (293)
T PRK04180 62 DPKMIEEIMDAV--SIPVMAKARIGHFVEAQILEALGVDYI--DESEVLTP--------------ADEEYHIDKWDF--- 120 (293)
T ss_pred CHHHHHHHHHhC--CCCeEEeehhhHHHHHHHHHHcCCCEE--eccCCCCc--------------hHHHHHHHHHHc---
Confidence 334555777766 7999983 3443345788899999999 26666663 333333322232
Q ss_pred CCCCceEEeeccCCCCCCHHHHHHHHHHcCccce--------ecCC-ccc---ccchhhh-----------hhhhhcCCc
Q 004491 557 VKEVPVLAGVCGTDPFRRVDYFLKQLESIGFFGV--------QNFP-TVG---LFDGNFR-----------QNLEETGMG 613 (749)
Q Consensus 557 v~~tPViaGv~atDP~~~~~~~l~~lk~~Gf~GV--------~NfP-Tvg---liDG~fR-----------~~LEe~G~g 613 (749)
++|++||+ +++++-|.+++ .||.=| -|.- .|- .|-+..| ..-.+.+.+
T Consensus 121 --~~~fmad~------~~l~EAlrai~-~GadmI~Ttge~gtg~v~~av~h~r~~~~~i~~L~gyt~~~~~~~a~~~~~~ 191 (293)
T PRK04180 121 --TVPFVCGA------RNLGEALRRIA-EGAAMIRTKGEAGTGNVVEAVRHMRQINGEIRRLTSMSEDELYTAAKELQAP 191 (293)
T ss_pred --CCCEEccC------CCHHHHHHHHH-CCCCeeeccCCCCCccHHHHHHHHHHHHHHHHHHhCCCHHHHHhhccccCCC
Confidence 68999987 46777777664 354322 1110 000 0111111 111113334
Q ss_pred hHHHHHHHHHHHHcCCcccccc-------cCHHHHHHHHhccCcEEEeccCCCcccccccccccCHHHHHHHHHHHHHHH
Q 004491 614 YGLEVEMIDKAHKMGLLTTPYA-------FNEGEAVKMAKAGADIIVAHMGLTTSGSIGAKTALSLDESVDRVQAIADAA 686 (749)
Q Consensus 614 y~~EVemi~~A~~~gl~T~~yv-------f~~eqa~~Ma~AGaDiiv~h~GlT~gG~~Ga~~~~sl~~~~~~~~~i~~aa 686 (749)
| |+|++.++.. .+|.+ ++++++..|.++|||-+++--+++... ..+ +.++++.++.
T Consensus 192 ~----elL~ei~~~~--~iPVV~~AeGGI~TPedaa~vme~GAdgVaVGSaI~ks~--------dP~---~~akafv~ai 254 (293)
T PRK04180 192 Y----ELVKEVAELG--RLPVVNFAAGGIATPADAALMMQLGADGVFVGSGIFKSG--------DPE---KRARAIVEAT 254 (293)
T ss_pred H----HHHHHHHHhC--CCCEEEEEeCCCCCHHHHHHHHHhCCCEEEEcHHhhcCC--------CHH---HHHHHHHHHH
Confidence 3 5678877753 56765 799999999999999999876666332 233 3445666655
Q ss_pred HHh
Q 004491 687 HRI 689 (749)
Q Consensus 687 ~~~ 689 (749)
...
T Consensus 255 ~~~ 257 (293)
T PRK04180 255 THY 257 (293)
T ss_pred HHc
Confidence 554
No 331
>TIGR03249 KdgD 5-dehydro-4-deoxyglucarate dehydratase. 5-dehydro-4-deoxyglucarate dehydratase not only catalyzes the dehydration of the substrate (diol to ketone + water), but causes the decarboxylation of the intermediate product to yield 2-oxoglutarate semialdehyde (2,5-dioxopentanoate). The gene for the enzyme is usually observed in the vicinity of transporters and dehydratases handling D-galactarate and D-gluconate as well as aldehyde dehydrogenases which convert the product to alpha-ketoglutarate.
Probab=73.81 E-value=7.5 Score=41.81 Aligned_cols=99 Identities=14% Similarity=0.175 Sum_probs=65.0
Q ss_pred ccHHHHHHHHHHHhhcCCCeEEeccccch-----hhhhhhhcCCcEEEEeccccccccCCccccccccccCchHHHHHhh
Q 004491 476 QRTQAILSKLKYQIDKGLPIIGAGAGTGI-----SAKFEEAGGVDLIVLYNSGRFRMAGRGSLAGLLPFADANAVVLEMA 550 (749)
Q Consensus 476 ~~r~~il~~L~~~i~~~~piig~gaGtGl-----sAk~ae~gGaDli~~ynsGrfR~~G~~SlagllpygdaN~iv~e~~ 550 (749)
-.|+++++...+.++.+.||+. |+|+.+ .||.+++.|||-+++..-- |.+ -+.+-+.+.-
T Consensus 58 eEr~~v~~~~~~~~~g~~pvi~-gv~~~t~~ai~~a~~a~~~Gadav~~~pP~------------y~~--~s~~~i~~~f 122 (296)
T TIGR03249 58 AEYEQVVEIAVSTAKGKVPVYT-GVGGNTSDAIEIARLAEKAGADGYLLLPPY------------LIN--GEQEGLYAHV 122 (296)
T ss_pred HHHHHHHHHHHHHhCCCCcEEE-ecCccHHHHHHHHHHHHHhCCCEEEECCCC------------CCC--CCHHHHHHHH
Confidence 3688999999998888888773 344433 5789999999999986632 222 3467888888
Q ss_pred hhhcCCCCCCceEEeeccCCCCCCHHHHHHHHHH--cCccceec
Q 004491 551 NEVLPVVKEVPVLAGVCGTDPFRRVDYFLKQLES--IGFFGVQN 592 (749)
Q Consensus 551 ~eilp~v~~tPViaGv~atDP~~~~~~~l~~lk~--~Gf~GV~N 592 (749)
++|...+ ++||+- -+.+ -+.--...+.+|.+ -.+.||-.
T Consensus 123 ~~v~~a~-~~pvil-Yn~~-g~~l~~~~~~~La~~~~nvvgiKd 163 (296)
T TIGR03249 123 EAVCEST-DLGVIV-YQRD-NAVLNADTLERLADRCPNLVGFKD 163 (296)
T ss_pred HHHHhcc-CCCEEE-EeCC-CCCCCHHHHHHHHhhCCCEEEEEe
Confidence 8888887 589663 2211 11222556677754 25555543
No 332
>cd04733 OYE_like_2_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 2. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=73.76 E-value=1.5e+02 Score=32.69 Aligned_cols=153 Identities=21% Similarity=0.214 Sum_probs=87.1
Q ss_pred cccHHHHHHHHHHHhhcCCCeEEeccccchhhhhhhhcCCcEEEEeccccc------------c--ccCCcccccccccc
Q 004491 475 LQRTQAILSKLKYQIDKGLPIIGAGAGTGISAKFEEAGGVDLIVLYNSGRF------------R--MAGRGSLAGLLPFA 540 (749)
Q Consensus 475 ~~~r~~il~~L~~~i~~~~piig~gaGtGlsAk~ae~gGaDli~~ynsGrf------------R--~~G~~Slagllpyg 540 (749)
-|+++||-+-+.+-+ -.||.+.++|.|.|=+.-..-| | .-| ||| -
T Consensus 138 ~mt~~eI~~~i~~~~--------------~aA~ra~~aGfDgVeih~a~gyLl~qFlsp~~N~R~D~yG-Gsl------e 196 (338)
T cd04733 138 AMTEEEIEDVIDRFA--------------HAARLAQEAGFDGVQIHAAHGYLLSQFLSPLTNKRTDEYG-GSL------E 196 (338)
T ss_pred cCCHHHHHHHHHHHH--------------HHHHHHHHcCCCEEEEchhhhhHHHHhcCCcCCCCCccCC-CCH------H
Confidence 478888877766554 4699999999999977533211 1 111 222 1
Q ss_pred CchHHHHHhhhhhcCCC-CCCceEEeeccCCC------CCCHHHHHHHHHHcCccceecCCcccccchhhhhhhhh---c
Q 004491 541 DANAVVLEMANEVLPVV-KEVPVLAGVCGTDP------FRRVDYFLKQLESIGFFGVQNFPTVGLFDGNFRQNLEE---T 610 (749)
Q Consensus 541 daN~iv~e~~~eilp~v-~~tPViaGv~atDP------~~~~~~~l~~lk~~Gf~GV~NfPTvgliDG~fR~~LEe---~ 610 (749)
|-=.+++|.-++|--.+ .+.||..=+++.|- ..+.-+|++.|++.|..=|. |. .|.+.+.... .
T Consensus 197 nR~rf~~EiI~aIR~avG~d~~v~vris~~~~~~~g~~~eea~~ia~~Le~~Gvd~ie----v~--~g~~~~~~~~~~~~ 270 (338)
T cd04733 197 NRARLLLEIYDAIRAAVGPGFPVGIKLNSADFQRGGFTEEDALEVVEALEEAGVDLVE----LS--GGTYESPAMAGAKK 270 (338)
T ss_pred HHHHHHHHHHHHHHHHcCCCCeEEEEEcHHHcCCCCCCHHHHHHHHHHHHHcCCCEEE----ec--CCCCCCcccccccc
Confidence 22344555554444444 36788776664321 12455889999998864433 10 0111110000 0
Q ss_pred -----CCchHHH-HHHHHHHHHcCCcccccccCHHHHHHHHhcc-CcEEEe
Q 004491 611 -----GMGYGLE-VEMIDKAHKMGLLTTPYAFNEGEAVKMAKAG-ADIIVA 654 (749)
Q Consensus 611 -----G~gy~~E-Vemi~~A~~~gl~T~~yvf~~eqa~~Ma~AG-aDiiv~ 654 (749)
.-+|..+ .+-|+++-..=+++..-+.++++++++.+.| +|++..
T Consensus 271 ~~~~~~~~~~~~~~~~ik~~v~iPVi~~G~i~t~~~a~~~l~~g~aD~V~l 321 (338)
T cd04733 271 ESTIAREAYFLEFAEKIRKVTKTPLMVTGGFRTRAAMEQALASGAVDGIGL 321 (338)
T ss_pred CCccccchhhHHHHHHHHHHcCCCEEEeCCCCCHHHHHHHHHcCCCCeeee
Confidence 0122222 3346666666667777788999999999876 898754
No 333
>PRK07360 FO synthase subunit 2; Reviewed
Probab=73.67 E-value=65 Score=36.06 Aligned_cols=58 Identities=24% Similarity=0.339 Sum_probs=42.7
Q ss_pred CCHHHHHHHHHHcCccceecCCc--ccccchhhhhhhhhcCCchHHHHHHHHHHHHcCCcccc
Q 004491 573 RRVDYFLKQLESIGFFGVQNFPT--VGLFDGNFRQNLEETGMGYGLEVEMIDKAHKMGLLTTP 633 (749)
Q Consensus 573 ~~~~~~l~~lk~~Gf~GV~NfPT--vgliDG~fR~~LEe~G~gy~~EVemi~~A~~~gl~T~~ 633 (749)
....+-+++||+.|...+ |- --..+-.+|+.+--....++.=++.++.||+.|+-++.
T Consensus 160 ~~~~e~l~~LkeAGld~~---~~t~~e~l~~~vr~~i~p~~~s~~~~l~~i~~a~~~Gl~~~s 219 (371)
T PRK07360 160 LSYEEVLKALKDAGLDSM---PGTAAEILVDEVRRIICPEKIKTAEWIEIVKTAHKLGLPTTS 219 (371)
T ss_pred CCHHHHHHHHHHcCCCcC---CCcchhhccHHHHHhhCCCCCCHHHHHHHHHHHHHcCCCcee
Confidence 566889999999777666 41 12245567777766667887779999999999997654
No 334
>PRK07998 gatY putative fructose-1,6-bisphosphate aldolase; Reviewed
Probab=73.49 E-value=91 Score=34.22 Aligned_cols=139 Identities=19% Similarity=0.264 Sum_probs=93.9
Q ss_pred CCCCHHHHHHHHHHcCcc-ceecCCcccccchhhhhhhhhcC--------------CchHHHHHHHHHHHHcCCcccc--
Q 004491 571 PFRRVDYFLKQLESIGFF-GVQNFPTVGLFDGNFRQNLEETG--------------MGYGLEVEMIDKAHKMGLLTTP-- 633 (749)
Q Consensus 571 P~~~~~~~l~~lk~~Gf~-GV~NfPTvgliDG~fR~~LEe~G--------------~gy~~EVemi~~A~~~gl~T~~-- 633 (749)
|+.++.+.|+..++.||+ |=-|....-.+.|-++.+ |+.+ +|++.=..|++.+.+.= .+|
T Consensus 2 ~lv~~k~ll~~A~~~~yaV~AfN~~n~e~~~avi~AA-e~~~sPvIl~~~~~~~~~~g~~~~~~~~~~~A~~~--~vPV~ 78 (283)
T PRK07998 2 PLVNGRILLDRIQEKHVLAGAFNTTNLETTISILNAI-ERSGLPNFIQIAPTNAQLSGYDYIYEIVKRHADKM--DVPVS 78 (283)
T ss_pred CCCcHHHHHHHHHHCCCEEEEEeeCCHHHHHHHHHHH-HHhCCCEEEECcHhHHhhCCHHHHHHHHHHHHHHC--CCCEE
Confidence 677888888888888875 445555555555655544 3333 66777677776655432 445
Q ss_pred ----cccCHHHHHHHHhccCcEEEeccCCCcccccccccccCHHHHHHHHHHHHHHHHHhCCCe-EEEEc-cCC------
Q 004491 634 ----YAFNEGEAVKMAKAGADIIVAHMGLTTSGSIGAKTALSLDESVDRVQAIADAAHRINPDA-IVLCH-GGP------ 701 (749)
Q Consensus 634 ----yvf~~eqa~~Ma~AGaDiiv~h~GlT~gG~~Ga~~~~sl~~~~~~~~~i~~aa~~~~pdi-i~l~h-GGP------ 701 (749)
...+.|..++-.++|.+=+-.- | ..++++|=++.+.++.+.|++.+=.| .=|-| ||.
T Consensus 79 lHLDH~~~~e~i~~Ai~~GftSVM~D------g-----S~l~~eeNi~~T~~vve~Ah~~gv~VEaElG~vgg~ed~~~~ 147 (283)
T PRK07998 79 LHLDHGKTFEDVKQAVRAGFTSVMID------G-----AALPFEENIAFTKEAVDFAKSYGVPVEAELGAILGKEDDHVS 147 (283)
T ss_pred EECcCCCCHHHHHHHHHcCCCEEEEe------C-----CCCCHHHHHHHHHHHHHHHHHcCCEEEEEeccCCCccccccc
Confidence 4557788888888877665542 2 26899999999999999999876433 22322 232
Q ss_pred ----CCCHHHHHHHHhhC---------CCccEEec
Q 004491 702 ----ISSPSEAEFILKRT---------KGVHGFYG 723 (749)
Q Consensus 702 ----i~~p~d~~~~l~~~---------~~~~Gf~g 723 (749)
.++|+++..+++.| -.+||.|-
T Consensus 148 ~~~~~T~pe~a~~Fv~~TgvD~LAvaiGt~HG~Y~ 182 (283)
T PRK07998 148 EADCKTEPEKVKDFVERTGCDMLAVSIGNVHGLED 182 (283)
T ss_pred cccccCCHHHHHHHHHHhCcCeeehhccccccCCC
Confidence 58999999999863 23477774
No 335
>PLN02826 dihydroorotate dehydrogenase
Probab=73.30 E-value=33 Score=39.32 Aligned_cols=156 Identities=17% Similarity=0.188 Sum_probs=93.4
Q ss_pred eEEeccccc--------hhhhhhhhcC--CcEEEEe----ccccccccCCccccccccccCchHHHHHhhhhhcCCC---
Q 004491 495 IIGAGAGTG--------ISAKFEEAGG--VDLIVLY----NSGRFRMAGRGSLAGLLPFADANAVVLEMANEVLPVV--- 557 (749)
Q Consensus 495 iig~gaGtG--------lsAk~ae~gG--aDli~~y----nsGrfR~~G~~SlagllpygdaN~iv~e~~~eilp~v--- 557 (749)
++|+..|-- =.++++++-+ ||.|.+= |+-..| .....+.+.++.+.|-...
T Consensus 188 ~lgvnIg~nk~~~~~~~Dy~~~~~~~~~~aDylelNiScPNtpglr------------~lq~~~~l~~ll~~V~~~~~~~ 255 (409)
T PLN02826 188 ILGVNLGKNKTSEDAAADYVQGVRALSQYADYLVINVSSPNTPGLR------------KLQGRKQLKDLLKKVLAARDEM 255 (409)
T ss_pred eEEEEeccCCCCcccHHHHHHHHHHHhhhCCEEEEECCCCCCCCcc------------cccChHHHHHHHHHHHHHHHHh
Confidence 577766533 2445555555 9998762 442222 2222344455544432221
Q ss_pred -----CCCceEEeeccCCCCCCHHHHHHHHHHcCccceecCCcccccchhhh-hhh--hhcCCc----hHHHHHHHHHHH
Q 004491 558 -----KEVPVLAGVCGTDPFRRVDYFLKQLESIGFFGVQNFPTVGLFDGNFR-QNL--EETGMG----YGLEVEMIDKAH 625 (749)
Q Consensus 558 -----~~tPViaGv~atDP~~~~~~~l~~lk~~Gf~GV~NfPTvgliDG~fR-~~L--Ee~G~g----y~~EVemi~~A~ 625 (749)
.+.||+.=+...-..-++..+.+.+++.|..||+=+=|.--..+... ..+ |.-|++ +.+=.++|++.+
T Consensus 256 ~~~~~~~~Pv~vKlaPdl~~~di~~ia~~a~~~G~dGIi~~NTt~~r~~dl~~~~~~~~~GGlSG~pl~~~sl~~v~~l~ 335 (409)
T PLN02826 256 QWGEEGPPPLLVKIAPDLSKEDLEDIAAVALALGIDGLIISNTTISRPDSVLGHPHADEAGGLSGKPLFDLSTEVLREMY 335 (409)
T ss_pred hhccccCCceEEecCCCCCHHHHHHHHHHHHHcCCCEEEEEcccCcCccchhcccccccCCCcCCccccHHHHHHHHHHH
Confidence 24899987754333347899999999999999976655421111110 011 222233 224455666655
Q ss_pred H-----cCCcccccccCHHHHHHHHhccCcEEEeccCCCccc
Q 004491 626 K-----MGLLTTPYAFNEGEAVKMAKAGADIIVAHMGLTTSG 662 (749)
Q Consensus 626 ~-----~gl~T~~yvf~~eqa~~Ma~AGaDiiv~h~GlT~gG 662 (749)
+ .-+.-+.=+++.++|.++..|||+.+=+.-++-..|
T Consensus 336 ~~~~~~ipIIgvGGI~sg~Da~e~i~AGAs~VQv~Ta~~~~G 377 (409)
T PLN02826 336 RLTRGKIPLVGCGGVSSGEDAYKKIRAGASLVQLYTAFAYEG 377 (409)
T ss_pred HHhCCCCcEEEECCCCCHHHHHHHHHhCCCeeeecHHHHhcC
Confidence 4 457888889999999999999999998876655543
No 336
>PRK15108 biotin synthase; Provisional
Probab=73.14 E-value=20 Score=39.72 Aligned_cols=137 Identities=16% Similarity=0.207 Sum_probs=73.3
Q ss_pred CCCCHHHHHHHHHHcCccceecCCcccccchhhhhhhhhcCCchHHHHHHHHHHHHcCCcccc--cccCHHHHHHHHhcc
Q 004491 571 PFRRVDYFLKQLESIGFFGVQNFPTVGLFDGNFRQNLEETGMGYGLEVEMIDKAHKMGLLTTP--YAFNEGEAVKMAKAG 648 (749)
Q Consensus 571 P~~~~~~~l~~lk~~Gf~GV~NfPTvgliDG~fR~~LEe~G~gy~~EVemi~~A~~~gl~T~~--yvf~~eqa~~Ma~AG 648 (749)
++.+.++.++..++..=.|+..| . +-+.++ +.....++.=.++++.+++.++-.+. ...+.++.+++.+||
T Consensus 74 ~~ls~eEI~~~a~~~~~~G~~~i---~-i~~~g~---~p~~~~~e~i~~~i~~ik~~~i~v~~s~G~ls~e~l~~LkeAG 146 (345)
T PRK15108 74 RLMEVEQVLESARKAKAAGSTRF---C-MGAAWK---NPHERDMPYLEQMVQGVKAMGLETCMTLGTLSESQAQRLANAG 146 (345)
T ss_pred cCCCHHHHHHHHHHHHHcCCCEE---E-EEecCC---CCCcchHHHHHHHHHHHHhCCCEEEEeCCcCCHHHHHHHHHcC
Confidence 44566777766664332344433 1 111111 11122234444667777777754332 236799999999999
Q ss_pred CcEEEeccCCCcccccccccccCHHHHHHHHHHHHHHHHHhCCCeEEEEccCCCCCHHHHHHHHhhCCCc
Q 004491 649 ADIIVAHMGLTTSGSIGAKTALSLDESVDRVQAIADAAHRINPDAIVLCHGGPISSPSEAEFILKRTKGV 718 (749)
Q Consensus 649 aDiiv~h~GlT~gG~~Ga~~~~sl~~~~~~~~~i~~aa~~~~pdii~l~hGGPi~~p~d~~~~l~~~~~~ 718 (749)
+|.+...+--..+..--..+..+.++-++.++...++-..++--. ++ |...+++|.-..+.+....
T Consensus 147 ld~~n~~leT~p~~f~~I~~~~~~~~rl~~i~~a~~~G~~v~sg~-i~---GlgEt~ed~v~~~~~l~~l 212 (345)
T PRK15108 147 LDYYNHNLDTSPEFYGNIITTRTYQERLDTLEKVRDAGIKVCSGG-IV---GLGETVKDRAGLLLQLANL 212 (345)
T ss_pred CCEEeeccccChHhcCCCCCCCCHHHHHHHHHHHHHcCCceeeEE-EE---eCCCCHHHHHHHHHHHHhc
Confidence 999866554432222112234577777766666555443332211 22 3567898877766544433
No 337
>COG0800 Eda 2-keto-3-deoxy-6-phosphogluconate aldolase [Carbohydrate transport and metabolism]
Probab=73.12 E-value=17 Score=38.31 Aligned_cols=87 Identities=22% Similarity=0.180 Sum_probs=70.9
Q ss_pred HHHHHHHHcCCcccccccCHHHHHHHHhccCcEEEeccCCCcccccccccccCHHHHHHHHHHHHHHHHHhCCCeEEEEc
Q 004491 619 EMIDKAHKMGLLTTPYAFNEGEAVKMAKAGADIIVAHMGLTTSGSIGAKTALSLDESVDRVQAIADAAHRINPDAIVLCH 698 (749)
Q Consensus 619 emi~~A~~~gl~T~~yvf~~eqa~~Ma~AGaDiiv~h~GlT~gG~~Ga~~~~sl~~~~~~~~~i~~aa~~~~pdii~l~h 698 (749)
|+++.|++.|+.++|=|+|+-|+.+-.++|++++=.-.+=+.||. .+.++...-=|++-++--
T Consensus 97 ev~~~a~~~~ip~~PG~~TptEi~~Ale~G~~~lK~FPa~~~Gg~-----------------~~~ka~~gP~~~v~~~pT 159 (211)
T COG0800 97 EVAKAANRYGIPYIPGVATPTEIMAALELGASALKFFPAEVVGGP-----------------AMLKALAGPFPQVRFCPT 159 (211)
T ss_pred HHHHHHHhCCCcccCCCCCHHHHHHHHHcChhheeecCccccCcH-----------------HHHHHHcCCCCCCeEeec
Confidence 679999999999999999999999999999999998888777764 355556667788888888
Q ss_pred cCCCCCHHHHHHHHhhCCCccEEec-Cccc
Q 004491 699 GGPISSPSEAEFILKRTKGVHGFYG-ASSM 727 (749)
Q Consensus 699 GGPi~~p~d~~~~l~~~~~~~Gf~g-~Ss~ 727 (749)
|| .+++.+...+.. . +. =+| +|.+
T Consensus 160 GG--Vs~~N~~~yla~-g-v~-avG~Gs~l 184 (211)
T COG0800 160 GG--VSLDNAADYLAA-G-VV-AVGLGSWL 184 (211)
T ss_pred CC--CCHHHHHHHHhC-C-ce-EEecCccc
Confidence 88 688888888855 4 43 344 6665
No 338
>TIGR03569 NeuB_NnaB N-acetylneuraminate synthase. This family is a subset of the Pfam model pfam03102 and is believed to include only authentic NeuB N-acetylneuraminate (sialic acid) synthase enzymes. The majority of the genes identified by this model are observed adjacent to both the NeuA and NeuC genes which together effect the biosynthesis of CMP-N-acetylneuraminate from UDP-N-acetylglucosamine.
Probab=72.98 E-value=36 Score=37.96 Aligned_cols=58 Identities=10% Similarity=-0.009 Sum_probs=51.8
Q ss_pred ccch-hhhhhhhhcCCchHHHHHHHHHHHHcCCcccccccCHHHHHHHHhccCcEEEec
Q 004491 598 LFDG-NFRQNLEETGMGYGLEVEMIDKAHKMGLLTTPYAFNEGEAVKMAKAGADIIVAH 655 (749)
Q Consensus 598 liDG-~fR~~LEe~G~gy~~EVemi~~A~~~gl~T~~yvf~~eqa~~Ma~AGaDiiv~h 655 (749)
.++| ...+.+++..++++.--++.+.|++.||..+.=+|+++++..+.+-|+|++=+.
T Consensus 58 ~~~~~~~~~~~~~~~l~~e~~~~L~~~~~~~Gi~~~stpfd~~svd~l~~~~v~~~KIa 116 (329)
T TIGR03569 58 TGAEESQLEMLKKLELSEEDHRELKEYCESKGIEFLSTPFDLESADFLEDLGVPRFKIP 116 (329)
T ss_pred CcCCCcHHHHHHHhCCCHHHHHHHHHHHHHhCCcEEEEeCCHHHHHHHHhcCCCEEEEC
Confidence 3444 678889999999999999999999999999999999999999999999998554
No 339
>cd02911 arch_FMN Archeal FMN-binding domain. This family of archaeal proteins are part of the NAD(P)H-dependent flavin oxidoreductase (oxidored) FMN-binding family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN. The specific function of this group is unknown.
Probab=72.96 E-value=40 Score=35.43 Aligned_cols=138 Identities=17% Similarity=0.124 Sum_probs=83.6
Q ss_pred CCCeEEecccc-----chhhhhhhhcCCcEEEEeccc-ccc---ccCCccccccccccCchHHHHHhhhhhcCCCCCCce
Q 004491 492 GLPIIGAGAGT-----GISAKFEEAGGVDLIVLYNSG-RFR---MAGRGSLAGLLPFADANAVVLEMANEVLPVVKEVPV 562 (749)
Q Consensus 492 ~~piig~gaGt-----GlsAk~ae~gGaDli~~ynsG-rfR---~~G~~SlagllpygdaN~iv~e~~~eilp~v~~tPV 562 (749)
+.|++---.|. --.|+..+.. +| +|=+|-| +.. -.|.|+- ||- --+.+.++.+.+-- + ++||
T Consensus 72 ~~p~~vqi~g~~~~~~~~aa~~~~~~-~~-~ielN~gCP~~~v~~~g~G~~--Ll~---~p~~l~eiv~avr~-~-~~pV 142 (233)
T cd02911 72 NVLVGVNVRSSSLEPLLNAAALVAKN-AA-ILEINAHCRQPEMVEAGAGEA--LLK---DPERLSEFIKALKE-T-GVPV 142 (233)
T ss_pred CCeEEEEecCCCHHHHHHHHHHHhhc-CC-EEEEECCCCcHHHhcCCcchH--HcC---CHHHHHHHHHHHHh-c-CCCE
Confidence 56766544452 2234444554 46 6668888 444 2344442 222 22566666655543 2 7899
Q ss_pred EEeeccCCCCCCHHHHHHHHHHcCccceecCCcccccchhhhhhhhhcCCchHHHHHHHHHHH-HcCCcccccccCHHHH
Q 004491 563 LAGVCGTDPFRRVDYFLKQLESIGFFGVQNFPTVGLFDGNFRQNLEETGMGYGLEVEMIDKAH-KMGLLTTPYAFNEGEA 641 (749)
Q Consensus 563 iaGv~atDP~~~~~~~l~~lk~~Gf~GV~NfPTvgliDG~fR~~LEe~G~gy~~EVemi~~A~-~~gl~T~~yvf~~eqa 641 (749)
..=+-.... .+...+.+.|.+.|..++. ++..+ .| +.-..+.|++.+ ..=+....=+++.++|
T Consensus 143 svKir~g~~-~~~~~la~~l~~aG~d~ih-------v~~~~------~g--~~ad~~~I~~i~~~ipVIgnGgI~s~eda 206 (233)
T cd02911 143 SVKIRAGVD-VDDEELARLIEKAGADIIH-------VDAMD------PG--NHADLKKIRDISTELFIIGNNSVTTIESA 206 (233)
T ss_pred EEEEcCCcC-cCHHHHHHHHHHhCCCEEE-------ECcCC------CC--CCCcHHHHHHhcCCCEEEEECCcCCHHHH
Confidence 986654432 6788899999999998751 12211 12 233457788876 2223444567899999
Q ss_pred HHHHhccCcEEEe
Q 004491 642 VKMAKAGADIIVA 654 (749)
Q Consensus 642 ~~Ma~AGaDiiv~ 654 (749)
++|.+.|||.+-+
T Consensus 207 ~~~l~~GaD~Vmi 219 (233)
T cd02911 207 KEMFSYGADMVSV 219 (233)
T ss_pred HHHHHcCCCEEEE
Confidence 9999999998654
No 340
>PF01070 FMN_dh: FMN-dependent dehydrogenase; InterPro: IPR000262 A number of oxidoreductases that act on alpha-hydroxy acids and which are FMN-containing flavoproteins have been shown [, , ] to be structurally related. These enzymes are: Lactate dehydrogenase (1.1.2.3 from EC), which consists of a dehydrogenase domain and a haem-binding domain called cytochrome b2 and which catalyses the conversion of lactate into pyruvate. Glycolate oxidase (1.1.3.15 from EC) ((S)-2-hydroxy-acid oxidase), a peroxisomal enzyme that catalyses the conversion of glycolate and oxygen to glyoxylate and hydrogen peroxide. Long chain alpha-hydroxy acid oxidase from rat (1.1.3.15 from EC), a peroxisomal enzyme. Lactate 2-monooxygenase (1.13.12.4 from EC) (lactate oxidase) from Mycobacterium smegmatis, which catalyses the conversion of lactate and oxygen to acetate, carbon dioxide and water. (S)-mandelate dehydrogenase from Pseudomonas putida (gene mdlB), which catalyses the reduction of (S)-mandelate to benzoylformate. The first step in the reaction mechanism of these enzymes is the abstraction of the proton from the alpha-carbon of the substrate producing a carbanion which can subsequently attach to the N5 atom of FMN. A conserved histidine has been shown [] to be involved in the removal of the proton. The region around this active site residue is highly conserved and contains an arginine residue which is involved in substrate binding.; GO: 0016491 oxidoreductase activity; PDB: 1VCG_C 1VCF_A 1P0N_B 1P0K_A 2A85_A 2A7P_A 3GIY_A 2A7N_A 3DH7_A 2RDU_A ....
Probab=72.88 E-value=6.1 Score=44.11 Aligned_cols=85 Identities=22% Similarity=0.336 Sum_probs=52.7
Q ss_pred CchHHHHHHHHHHHHcCCccccc----ccCHHHHHHHHhccCc-EEEeccCCCcccccccccccCHHHHHHHHHHHHHHH
Q 004491 612 MGYGLEVEMIDKAHKMGLLTTPY----AFNEGEAVKMAKAGAD-IIVAHMGLTTSGSIGAKTALSLDESVDRVQAIADAA 686 (749)
Q Consensus 612 ~gy~~EVemi~~A~~~gl~T~~y----vf~~eqa~~Ma~AGaD-iiv~h~GlT~gG~~Ga~~~~sl~~~~~~~~~i~~aa 686 (749)
+.+ ..++-|++. ...|. |.++++|+...++|+| |+|.+-|-|. ++-...-++.+.+..
T Consensus 212 ~~w-~~i~~~~~~-----~~~pvivKgv~~~~da~~~~~~G~~~i~vs~hGGr~-----------~d~~~~~~~~L~~i~ 274 (356)
T PF01070_consen 212 LTW-DDIEWIRKQ-----WKLPVIVKGVLSPEDAKRAVDAGVDGIDVSNHGGRQ-----------LDWGPPTIDALPEIR 274 (356)
T ss_dssp -SH-HHHHHHHHH-----CSSEEEEEEE-SHHHHHHHHHTT-SEEEEESGTGTS-----------STTS-BHHHHHHHHH
T ss_pred CCH-HHHHHHhcc-----cCCceEEEecccHHHHHHHHhcCCCEEEecCCCccc-----------CccccccccccHHHH
Confidence 555 347766664 33444 4899999999999999 5566666443 333333344444445
Q ss_pred HHhCCCeEEEEccCCCCCHHHHHHHHhh
Q 004491 687 HRINPDAIVLCHGGPISSPSEAEFILKR 714 (749)
Q Consensus 687 ~~~~pdii~l~hGGPi~~p~d~~~~l~~ 714 (749)
..+.+++-++.-|| |.+..|+-.-+.-
T Consensus 275 ~~~~~~~~i~~dgG-ir~g~Dv~kalaL 301 (356)
T PF01070_consen 275 AAVGDDIPIIADGG-IRRGLDVAKALAL 301 (356)
T ss_dssp HHHTTSSEEEEESS---SHHHHHHHHHT
T ss_pred hhhcCCeeEEEeCC-CCCHHHHHHHHHc
Confidence 55678899999988 7888888877744
No 341
>TIGR00874 talAB transaldolase. This family includes the majority of known and predicted transaldolase sequences, including E. coli TalA and TalB. It excluded two other families. The first includes E. coli transaldolase-like protein TalC. The second family includes the putative transaldolases of Helicobacter pylori and Mycobacterium tuberculosis.
Probab=72.71 E-value=16 Score=40.63 Aligned_cols=91 Identities=18% Similarity=0.215 Sum_probs=66.1
Q ss_pred HHHHHHHHHcCCccc-ccccCHHHHHHHHhccCcEEEeccCCCccc---ccc-cccccCHHHHHHHHHHHHHHHHHhCCC
Q 004491 618 VEMIDKAHKMGLLTT-PYAFNEGEAVKMAKAGADIIVAHMGLTTSG---SIG-AKTALSLDESVDRVQAIADAAHRINPD 692 (749)
Q Consensus 618 Vemi~~A~~~gl~T~-~yvf~~eqa~~Ma~AGaDiiv~h~GlT~gG---~~G-a~~~~sl~~~~~~~~~i~~aa~~~~pd 692 (749)
++.++.-.+.|+-+. -.+|+.+||.+-++|||+.|-+-+|.-.-- ..| .......+..+..+++|++.-++.+.+
T Consensus 138 i~A~~~L~~~GI~vN~TliFS~~Qa~aaa~AGa~~ISPFVgRi~dw~~~~~g~~~~~~~~d~Gv~~v~~i~~~~k~~g~~ 217 (317)
T TIGR00874 138 IRAAEELEKEGIHCNLTLLFSFVQAIACAEAKVTLISPFVGRILDWYKAATGKKEYSIEEDPGVASVKKIYNYYKKHGYP 217 (317)
T ss_pred HHHHHHHHHCCCceeeeeecCHHHHHHHHHcCCCEEEeecchHhHhhhhccCccccccccCchHHHHHHHHHHHHHcCCC
Confidence 456666667787654 359999999999999999999999954220 011 111233467888999999999999888
Q ss_pred eEEEEccCCCCCHHHHHH
Q 004491 693 AIVLCHGGPISSPSEAEF 710 (749)
Q Consensus 693 ii~l~hGGPi~~p~d~~~ 710 (749)
..|| |.-+.+++++..
T Consensus 218 T~Im--~ASfRn~~qv~~ 233 (317)
T TIGR00874 218 TEVM--GASFRNKEEILA 233 (317)
T ss_pred cEEE--eeccCCHHHHHH
Confidence 8888 666777776654
No 342
>PRK04165 acetyl-CoA decarbonylase/synthase complex subunit gamma; Provisional
Probab=72.55 E-value=16 Score=42.36 Aligned_cols=139 Identities=18% Similarity=0.239 Sum_probs=80.1
Q ss_pred HHHHHHHHHHhhcCCCeEEeccccchhhhhhhhcCCcEEEEeccccccccCCccccccccccCchHHHHHhhhhhcCCCC
Q 004491 479 QAILSKLKYQIDKGLPIIGAGAGTGISAKFEEAGGVDLIVLYNSGRFRMAGRGSLAGLLPFADANAVVLEMANEVLPVVK 558 (749)
Q Consensus 479 ~~il~~L~~~i~~~~piig~gaGtGlsAk~ae~gGaDli~~ynsGrfR~~G~~SlagllpygdaN~iv~e~~~eilp~v~ 558 (749)
..+++.+++.. +.||+=-. -.--.++.+-+.|+|.+-..||-. ..|- +-+.+++.+ .
T Consensus 144 ~~~Vk~V~~~~--dvPLSIDT-~dpevleaAleagad~~plI~Sat--------------~dN~-~~m~~la~~-----y 200 (450)
T PRK04165 144 AKAVKKVAETT--DLPLILCS-EDPAVLKAALEVVADRKPLLYAAT--------------KENY-EEMAELAKE-----Y 200 (450)
T ss_pred HHHHHHHHHhc--CCCEEEeC-CCHHHHHHHHHhcCCCCceEEecC--------------cchH-HHHHHHHHH-----c
Confidence 45666665543 77875443 455567777788999443333322 1111 122333433 2
Q ss_pred CCceEEeeccCCCCCCHHHHHHHHHHcCccceecCCcccccchhhhhhhhhcCCchHHHHHHHHHH------HHcCCccc
Q 004491 559 EVPVLAGVCGTDPFRRVDYFLKQLESIGFFGVQNFPTVGLFDGNFRQNLEETGMGYGLEVEMIDKA------HKMGLLTT 632 (749)
Q Consensus 559 ~tPViaGv~atDP~~~~~~~l~~lk~~Gf~GV~NfPTvgliDG~fR~~LEe~G~gy~~EVemi~~A------~~~gl~T~ 632 (749)
+.||+. .+.| ...+.+.+++++++|+.=+.==|.. |.|.+.++. .++||++ +.+|+-++
T Consensus 201 g~pvVv--~~~d-l~~L~~lv~~~~~~GI~dIILDPg~----ggf~ksl~~--------~~~iRr~Al~~~~~~lgyPil 265 (450)
T PRK04165 201 NCPLVV--KAPN-LEELKELVEKLQAAGIKDLVLDPGT----ENIKETLDD--------FVQIRRAAIKKGDRPLGYPII 265 (450)
T ss_pred CCcEEE--Echh-HHHHHHHHHHHHHcCCCcEEECCCC----chhhhhHHH--------HHHHHhhhhhcccccCCCCEE
Confidence 456655 3334 4456677778889999433333655 346666643 3467776 44566666
Q ss_pred ccccC---------HHHHHHHHhccCcEEEec
Q 004491 633 PYAFN---------EGEAVKMAKAGADIIVAH 655 (749)
Q Consensus 633 ~yvf~---------~eqa~~Ma~AGaDiiv~h 655 (749)
.++-+ .-.|-.++.+||||+|.|
T Consensus 266 ~~~s~k~~~~~~~E~~~As~~~~kya~i~Vl~ 297 (450)
T PRK04165 266 AFPIEAWMSDPMKEAAIASTLIAKYADILVLH 297 (450)
T ss_pred EcchhhcccchHHHHHHHHHHHHhCCcEEEEc
Confidence 66543 124566788999999998
No 343
>TIGR00737 nifR3_yhdG putative TIM-barrel protein, nifR3 family. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.
Probab=72.54 E-value=67 Score=34.97 Aligned_cols=153 Identities=22% Similarity=0.230 Sum_probs=85.0
Q ss_pred hcCCCeEEecccc-----chhhhhhhhcCCcEEEEecccc---ccc-cCCccccccccccCchHHHHHhhhhhcCCCCCC
Q 004491 490 DKGLPIIGAGAGT-----GISAKFEEAGGVDLIVLYNSGR---FRM-AGRGSLAGLLPFADANAVVLEMANEVLPVVKEV 560 (749)
Q Consensus 490 ~~~~piig~gaGt-----GlsAk~ae~gGaDli~~ynsGr---fR~-~G~~SlagllpygdaN~iv~e~~~eilp~v~~t 560 (749)
..+.|++.--.|. .-.|+.+++.|+|.|=+ |.|- .|. .|.||.. .+--+.+.|+.+.|--.+ +.
T Consensus 60 ~~~~p~i~ql~g~~~~~~~~aa~~~~~~G~d~Iel-N~gcP~~~~~~~~~Gs~l-----~~~~~~~~ei~~~vr~~~-~~ 132 (319)
T TIGR00737 60 EDETPISVQLFGSDPDTMAEAAKINEELGADIIDI-NMGCPVPKITKKGAGSAL-----LRDPDLIGKIVKAVVDAV-DI 132 (319)
T ss_pred CccceEEEEEeCCCHHHHHHHHHHHHhCCCCEEEE-ECCCCHHHhcCCCccchH-----hCCHHHHHHHHHHHHhhc-CC
Confidence 3467776543332 23566777789998754 5441 010 1111110 111256666665554444 38
Q ss_pred ceEEeec-cCCCC-CCHHHHHHHHHHcCccceecCCcccccchhhhhhhhhcCCchHHHHHHHHHHHHcCCcccccccCH
Q 004491 561 PVLAGVC-GTDPF-RRVDYFLKQLESIGFFGVQNFPTVGLFDGNFRQNLEETGMGYGLEVEMIDKAHKMGLLTTPYAFNE 638 (749)
Q Consensus 561 PViaGv~-atDP~-~~~~~~l~~lk~~Gf~GV~NfPTvgliDG~fR~~LEe~G~gy~~EVemi~~A~~~gl~T~~yvf~~ 638 (749)
||..-+. +.|+. .+..+|.+.|.+.|..+|.= .|..+..-- .|-..-..+..|+++...-++..+=+++.
T Consensus 133 pv~vKir~g~~~~~~~~~~~a~~l~~~G~d~i~v-------h~r~~~~~~-~~~~~~~~i~~i~~~~~ipvi~nGgI~~~ 204 (319)
T TIGR00737 133 PVTVKIRIGWDDAHINAVEAARIAEDAGAQAVTL-------HGRTRAQGY-SGEANWDIIARVKQAVRIPVIGNGDIFSP 204 (319)
T ss_pred CEEEEEEcccCCCcchHHHHHHHHHHhCCCEEEE-------EcccccccC-CCchhHHHHHHHHHcCCCcEEEeCCCCCH
Confidence 9988763 44543 35778999999999888842 122221000 01111122333444433455566667899
Q ss_pred HHHHHHH-hccCcEEEeccC
Q 004491 639 GEAVKMA-KAGADIIVAHMG 657 (749)
Q Consensus 639 eqa~~Ma-~AGaDiiv~h~G 657 (749)
+++.++. +.|||.+-+=-|
T Consensus 205 ~da~~~l~~~gad~VmigR~ 224 (319)
T TIGR00737 205 EDAKAMLETTGCDGVMIGRG 224 (319)
T ss_pred HHHHHHHHhhCCCEEEEChh
Confidence 9999998 689998876433
No 344
>TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase. at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase.
Probab=72.42 E-value=28 Score=34.98 Aligned_cols=61 Identities=20% Similarity=0.146 Sum_probs=40.6
Q ss_pred CHH--HHHHHHhccCcEEEeccCCCcccccccccccCHHHHHHHHHHHHHHHHHhCCCeEEEEccCCCCCHHHHHHHHhh
Q 004491 637 NEG--EAVKMAKAGADIIVAHMGLTTSGSIGAKTALSLDESVDRVQAIADAAHRINPDAIVLCHGGPISSPSEAEFILKR 714 (749)
Q Consensus 637 ~~e--qa~~Ma~AGaDiiv~h~GlT~gG~~Ga~~~~sl~~~~~~~~~i~~aa~~~~pdii~l~hGGPi~~p~d~~~~l~~ 714 (749)
|++ |++++.++|||.|..|.-.+. ..+.++.+.+++.+-.+++=+++ |-..++++++.++.
T Consensus 63 d~~~~~~~~~~~~Gad~i~vh~~~~~----------------~~~~~~i~~~~~~g~~~~~~~~~-~~t~~~~~~~~~~~ 125 (206)
T TIGR03128 63 DAGEYEAEQAFAAGADIVTVLGVADD----------------ATIKGAVKAAKKHGKEVQVDLIN-VKDKVKRAKELKEL 125 (206)
T ss_pred cchHHHHHHHHHcCCCEEEEeccCCH----------------HHHHHHHHHHHHcCCEEEEEecC-CCChHHHHHHHHHc
Confidence 665 899999999999999965320 23455666677766555544443 44445788777753
No 345
>cd00957 Transaldolase_TalAB Transaldolases including both TalA and TalB. The enzyme catalyses the reversible transfer of a dyhydroxyacetone moiety, derived from fructose-6-phosphate to erythrose-4-phosphate yielding sedoheptulose-7-phosphate and glyceraldehyde-3-phosphate. The catalytic mechanism is similar to other class I aldolases. The enzyme is found in the non-oxidative branch of the pentose phosphate pathway and forms a dimer in solution.
Probab=72.32 E-value=16 Score=40.44 Aligned_cols=91 Identities=20% Similarity=0.244 Sum_probs=66.7
Q ss_pred HHHHHHHHHcCCccc-ccccCHHHHHHHHhccCcEEEeccCCCccccc---cccc-ccCHHHHHHHHHHHHHHHHHhCCC
Q 004491 618 VEMIDKAHKMGLLTT-PYAFNEGEAVKMAKAGADIIVAHMGLTTSGSI---GAKT-ALSLDESVDRVQAIADAAHRINPD 692 (749)
Q Consensus 618 Vemi~~A~~~gl~T~-~yvf~~eqa~~Ma~AGaDiiv~h~GlT~gG~~---Ga~~-~~sl~~~~~~~~~i~~aa~~~~pd 692 (749)
++.++.-.+.|+-+. -.+|+.+||..-++|||+.|-+-+|.-.-=.. |.+. ...-+..+..+++|++.-++.+.+
T Consensus 138 i~A~~~L~~~GI~vn~TlvFS~~Qa~~aa~AGa~~ISPfVgRi~d~~~~~~~~~~~~~~~d~Gv~~v~~i~~~~~~~~~~ 217 (313)
T cd00957 138 IQAAKQLEKEGIHCNLTLLFSFAQAVACAEAGVTLISPFVGRILDWYKKHSGDKAYTAEEDPGVASVKKIYNYYKKFGYK 217 (313)
T ss_pred HHHHHHHHHCCCceeeeeecCHHHHHHHHHcCCCEEEeecchHHHhhhhccccccCCccCCcHHHHHHHHHHHHHHcCCC
Confidence 566677777788754 46999999999999999999999997631000 1110 112346888899999999999999
Q ss_pred eEEEEccCCCCCHHHHHH
Q 004491 693 AIVLCHGGPISSPSEAEF 710 (749)
Q Consensus 693 ii~l~hGGPi~~p~d~~~ 710 (749)
..|| |.-+.+++++..
T Consensus 218 T~vm--aASfRn~~~v~~ 233 (313)
T cd00957 218 TKVM--GASFRNIGQILA 233 (313)
T ss_pred cEEE--ecccCCHHHHHH
Confidence 9998 667777777654
No 346
>PRK09989 hypothetical protein; Provisional
Probab=72.22 E-value=22 Score=36.96 Aligned_cols=94 Identities=16% Similarity=0.163 Sum_probs=63.9
Q ss_pred hhhhhcCCchHHHHHHHHHHHHcCC----cccccccCHHHHHHHH-hccCcEEEeccCCC--ccccccc-ccccCHHHHH
Q 004491 605 QNLEETGMGYGLEVEMIDKAHKMGL----LTTPYAFNEGEAVKMA-KAGADIIVAHMGLT--TSGSIGA-KTALSLDESV 676 (749)
Q Consensus 605 ~~LEe~G~gy~~EVemi~~A~~~gl----~T~~yvf~~eqa~~Ma-~AGaDiiv~h~GlT--~gG~~Ga-~~~~sl~~~~ 676 (749)
.+|+.--..|..| +.|+++++.|+ +..++-++.++.+++. +.|..+.+.|.+.. ..+..+. ......++..
T Consensus 6 ~~~~~~~~~~~l~-~~l~~~~~~Gfd~VEl~~~~~~~~~~~~~~l~~~Gl~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (258)
T PRK09989 6 ANLSMMFTEVPFI-ERFAAARKAGFDAVEFLFPYDYSTLQIQKQLEQNHLTLALFNTAPGDINAGEWGLSALPGREHEAR 84 (258)
T ss_pred eehhhhhcCCCHH-HHHHHHHHcCCCEEEECCcccCCHHHHHHHHHHcCCcEEEeccCCCccCCCCCcccCCCccHHHHH
Confidence 3444444445555 88999999997 4446668888888775 99999999997642 2222111 1223345677
Q ss_pred HHHHHHHHHHHHhCCCeEEEEcc
Q 004491 677 DRVQAIADAAHRINPDAIVLCHG 699 (749)
Q Consensus 677 ~~~~~i~~aa~~~~pdii~l~hG 699 (749)
+.+++.++.|++.+-..|+++-|
T Consensus 85 ~~l~~~i~~A~~lg~~~v~v~~g 107 (258)
T PRK09989 85 ADIDLALEYALALNCEQVHVMAG 107 (258)
T ss_pred HHHHHHHHHHHHhCcCEEEECcc
Confidence 88899999999999887765433
No 347
>PRK12595 bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase; Reviewed
Probab=71.96 E-value=1.8e+02 Score=32.89 Aligned_cols=268 Identities=15% Similarity=0.130 Sum_probs=137.8
Q ss_pred CCCCCChhhhHHHHHHHHHhcccCCCceEEecCCCCCCHHHHHHHHHHHHHHHhccccccCCcccccccccccccccccc
Q 004491 375 GKPFYDPEATGTLISELRTLIQTNEDRQVKVYPHNINDSEFADALVDSFLEISGKNLMAFSSAHHVSCERHEDSVSNIYS 454 (749)
Q Consensus 375 G~pf~DPeAd~al~~~L~~~l~~~~~~~v~~~d~hINDp~FA~a~a~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 454 (749)
|.|.|||+-.+..++.+++.-.+ . =++++.+.+-+.+++...+-.+..... + .+ .+..+.
T Consensus 42 g~pi~dp~RE~~vl~~~~~~~~g-----------~-l~~~~i~~If~~I~~~Sr~~Q~~~~~k---~-~~----~s~~~~ 101 (360)
T PRK12595 42 GTKRYDPVREREMLDMIAENNEG-----------P-FEDSTIQHLFKEIFKASLELQEDDNRK---A-LL----VSRKKK 101 (360)
T ss_pred CCCCCChHHHHHHHHHHHHhccC-----------C-CCHHHHHHHHHHHHHHHHHHHHHhhhh---h-HH----hhCccC
Confidence 78999999999999999873221 1 145666665555555444321111111 1 00 111111
Q ss_pred CCCcccccCCCCCC------CCCCcccccHHHHHHHHHHHhhcCCCeEEec-----------cccc-----hhhhhhhhc
Q 004491 455 SSHGTICYSPSNFP------DARPETLQRTQAILSKLKYQIDKGLPIIGAG-----------AGTG-----ISAKFEEAG 512 (749)
Q Consensus 455 ~~~~~~~~~~~~~~------~~~~~~~~~r~~il~~L~~~i~~~~piig~g-----------aGtG-----lsAk~ae~g 512 (749)
...+.+-.....|- =+-|-.+-+++++++.-+.--+.|.+++-.| -|-| ...++.++-
T Consensus 102 ~~~~~~~~~~~~~g~~~~~~iaGpc~iE~~~~~~~~A~~lk~~g~~~~r~~~~kpRtsp~~f~g~~~e~l~~L~~~~~~~ 181 (360)
T PRK12595 102 PEDTIVDVKGEVIGDGNQSFIFGPCSVESYEQVEAVAKALKAKGLKLLRGGAFKPRTSPYDFQGLGVEGLKILKQVADEY 181 (360)
T ss_pred CCCCEEEECCEEecCCCeeeEEecccccCHHHHHHHHHHHHHcCCcEEEccccCCCCCCccccCCCHHHHHHHHHHHHHc
Confidence 11111111111111 1344555567776665555444455554433 2222 345667777
Q ss_pred CCcEEEE-eccccccccCCccccccccc--cCchHHHHHhhhhhcCCCCCCceEEeeccCCCCC---CHHHHHHHHHHcC
Q 004491 513 GVDLIVL-YNSGRFRMAGRGSLAGLLPF--ADANAVVLEMANEVLPVVKEVPVLAGVCGTDPFR---RVDYFLKQLESIG 586 (749)
Q Consensus 513 GaDli~~-ynsGrfR~~G~~Slagllpy--gdaN~iv~e~~~eilp~v~~tPViaGv~atDP~~---~~~~~l~~lk~~G 586 (749)
|.+++-. ++.--.... ..++-++-. ++++. .++.+++-- .+.||+.= +..+- +|..-.+.+.+.|
T Consensus 182 Gl~~~t~v~d~~~~~~l--~~~vd~lkI~s~~~~n--~~LL~~~a~--~gkPVilk---~G~~~t~~e~~~Ave~i~~~G 252 (360)
T PRK12595 182 GLAVISEIVNPADVEVA--LDYVDVIQIGARNMQN--FELLKAAGR--VNKPVLLK---RGLSATIEEFIYAAEYIMSQG 252 (360)
T ss_pred CCCEEEeeCCHHHHHHH--HHhCCeEEECcccccC--HHHHHHHHc--cCCcEEEe---CCCCCCHHHHHHHHHHHHHCC
Confidence 7777653 222111111 001112212 23332 344433332 25688763 33333 4444556777777
Q ss_pred c-------cceecCCcccccchhhhhhhhhcCCchHHHHHHHHHHHHcCCcccccccC-----------HHHHHHHHhcc
Q 004491 587 F-------FGVQNFPTVGLFDGNFRQNLEETGMGYGLEVEMIDKAHKMGLLTTPYAFN-----------EGEAVKMAKAG 648 (749)
Q Consensus 587 f-------~GV~NfPTvgliDG~fR~~LEe~G~gy~~EVemi~~A~~~gl~T~~yvf~-----------~eqa~~Ma~AG 648 (749)
- .||.+|||.+.-+=. +..|..-++ .|-+|.+|| +.-+++-..+|
T Consensus 253 n~~i~L~erg~s~yp~~~~~~ld---------------l~~i~~lk~--~~~~PV~~d~~Hs~G~r~~~~~~a~aAva~G 315 (360)
T PRK12595 253 NGQIILCERGIRTYEKATRNTLD---------------ISAVPILKQ--ETHLPVMVDVTHSTGRRDLLLPTAKAALAIG 315 (360)
T ss_pred CCCEEEECCccCCCCCCCCCCcC---------------HHHHHHHHH--HhCCCEEEeCCCCCcchhhHHHHHHHHHHcC
Confidence 6 488888865443321 233333443 234566663 22455667899
Q ss_pred Cc--EEEeccCCCcccccccccccCHHHHHHHHHHHHHHHHHh
Q 004491 649 AD--IIVAHMGLTTSGSIGAKTALSLDESVDRVQAIADAAHRI 689 (749)
Q Consensus 649 aD--iiv~h~GlT~gG~~Ga~~~~sl~~~~~~~~~i~~aa~~~ 689 (749)
|| +|=.|.--...|+-+. ..++.++..+.+++|.+-.+.-
T Consensus 316 Adg~~iE~H~dp~~a~~D~~-~sl~p~el~~l~~~i~~~~~~~ 357 (360)
T PRK12595 316 ADGVMAEVHPDPAVALSDSA-QQMDIPEFDRFLDELKPLANKL 357 (360)
T ss_pred CCeEEEEecCCCCCCCCchh-hhCCHHHHHHHHHHHHHHHHhh
Confidence 98 7788998777777554 5899999988888876655543
No 348
>PRK13016 dihydroxy-acid dehydratase; Provisional
Probab=71.93 E-value=6.6 Score=46.61 Aligned_cols=274 Identities=14% Similarity=0.183 Sum_probs=168.9
Q ss_pred CCcEEEE-eccCCchHHHHHHH-------HHHHhcCccEEEEecCCCc-hH--------------HHHHHHHcCCceEEE
Q 004491 208 EKCTVGI-TMFGVTTPCVNAVK-------ERLEKEGYETMVFHATGVG-GR--------------AMEALVKEGFIQGVL 264 (749)
Q Consensus 208 ~kp~Igi-TMFGvTTp~V~~~r-------~~Le~~GyEvlVFHATG~G-Gr--------------AME~Li~eG~~~gVl 264 (749)
+||.||| +.|.--+||=.+.+ +-..+.|--.+.|++.+.+ |- +.|.+++.-.|||++
T Consensus 41 ~KP~IgI~ns~se~~Pch~hL~~la~~Vk~gv~~aGG~P~ef~ti~v~Dgi~~g~sl~~RelIAdsiE~~~~a~~~Dg~V 120 (577)
T PRK13016 41 GKPVIAILNTWSDANPCHGHFRERVEDVKRGVLQAGGFPLELPALSLSENFVKPTTMLYRNLLAMETEELIRSHPVDGAV 120 (577)
T ss_pred cCCEEEEEecccCCcCchhhHHHHHHHHHHHHHHcCCeeEecccccCcccccCCcccccHHHHHHHHHHHHhcCCccceE
Confidence 6999997 56787889865554 4445568889999998884 33 348888888999998
Q ss_pred eCchhhhhhhhhCCccCCCCchhhhhhhcCCCeEEecCccccccCCCCCCCCccccCCcee------eecCcceEEecCH
Q 004491 265 DITTTEVADYVVGGVMACDSSRFDATIEKKIPLVLSVGALDMVNFGAKDTIPSKFQRRKIH------VHNQQVSLMRTTV 338 (749)
Q Consensus 265 DlTttElaD~l~GGv~saGp~RL~AA~~~GIPqVVspGalDmVnFG~~dtvPe~f~~R~~~------~HNp~vTlmRTt~ 338 (749)
=|.- ||-. -|.=|-||+|.+||.|+++|+-= .|-.|++|.+- +---+...=+.+.
T Consensus 121 ~l~~---CDK~-------~Pg~lMaaarlniPsI~v~GG~m---------~~G~~~g~~~~~~~~~~e~~g~~~~G~i~~ 181 (577)
T PRK13016 121 LMGG---CDKT-------TPGLVMGAISMGLPMIYLPAGPM---------LRGNYRGKVLGSGSDAWKYWDERRAGNITQ 181 (577)
T ss_pred Eecc---CCCC-------cHHHHHHHHhcCCCEEEEecCCC---------CCCccCCceechhHHHHHHHHHHHcCCCCH
Confidence 6653 3332 46679999999999999999642 24456665431 0011122224566
Q ss_pred HHHHHHHHHHHHHHccCCCCeEEEeeCCCCcccCCCCCCCCChhhhHHHHHHHHHhcccCCCceEEecCCCCCCH---HH
Q 004491 339 DENKKFAAFIANKLNQSSSKIRLCLPQNGISALDAPGKPFYDPEATGTLISELRTLIQTNEDRQVKVYPHNINDS---EF 415 (749)
Q Consensus 339 eE~~~ig~~iA~kLn~a~gpv~vllP~~G~S~lD~~G~pf~DPeAd~al~~~L~~~l~~~~~~~v~~~d~hINDp---~F 415 (749)
||..++-+ +.++ .-|-. +-.|=...-+.+.++|==.|+++... .-+|+ ++
T Consensus 182 eel~~~e~------~a~p--------~~GsC------~gmgTANTM~~~~EaLGm~LPGsa~~-------pA~~~~r~~~ 234 (577)
T PRK13016 182 AEWLEIEG------GIAR--------SYGTC------MTMGTASTMTAIAEALGLTLPGASSI-------PAADANHQRM 234 (577)
T ss_pred HHHHHHHh------ccCC--------CCCcc------cccCHHHHHHHHHHHHhcCCCcCcCC-------CCCCHHHHHH
Confidence 66554322 2222 22221 33566677788888988888875432 22233 46
Q ss_pred HHHHHHHHHHHHhccccccCCccccccccccccccccccCCCcccccCCCCCCCCCCcccccHHHHHHHHHHHhhcCCCe
Q 004491 416 ADALVDSFLEISGKNLMAFSSAHHVSCERHEDSVSNIYSSSHGTICYSPSNFPDARPETLQRTQAILSKLKYQIDKGLPI 495 (749)
Q Consensus 416 A~a~a~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~il~~L~~~i~~~~pi 495 (749)
|+...+++++|+++ |-||-.++||+.+...++--.+-|.
T Consensus 235 a~~ag~~iv~lv~~---------------------------------------~i~prdIlT~~af~NAi~v~~A~GG-- 273 (577)
T PRK13016 235 AALCGRRIVEMVWE---------------------------------------DLTPSQILTKAAFENAITVAMATGC-- 273 (577)
T ss_pred HHHHHHHHHHHHHc---------------------------------------CCCHHHhcCHHHHHHHHHHhcccCc--
Confidence 77777777777743 2356667888888877765544321
Q ss_pred EEecccc--chhhhhhhhcCCcEEEEeccccccccCCccccccccccCchHHHHHhhhhhcCCCCCCceEEeeccCCC-C
Q 004491 496 IGAGAGT--GISAKFEEAGGVDLIVLYNSGRFRMAGRGSLAGLLPFADANAVVLEMANEVLPVVKEVPVLAGVCGTDP-F 572 (749)
Q Consensus 496 ig~gaGt--GlsAk~ae~gGaDli~~ynsGrfR~~G~~SlagllpygdaN~iv~e~~~eilp~v~~tPViaGv~atDP-~ 572 (749)
..=+ =|. -.|.++|+||=+ . -..+| -++||+|+-+-..-+ |
T Consensus 274 ---STNavlHL~-AIA~eagv~l~l---------------------d--------dfd~i---s~~vP~l~~l~P~G~~~ 317 (577)
T PRK13016 274 ---STNAVIHLI-AMARRAGVPLSL---------------------D--------DLDRC---GRTVPVIANIRPSGKTY 317 (577)
T ss_pred ---cccHHHHHH-HHHHhcCCCCCH---------------------H--------HHHHH---hccCcccceecCCCCcc
Confidence 0000 011 245667777422 1 12222 245899999988888 5
Q ss_pred C--------CHHHHHHHHHHcCcccee-cCCcccccchhhhhhhhhc
Q 004491 573 R--------RVDYFLKQLESIGFFGVQ-NFPTVGLFDGNFRQNLEET 610 (749)
Q Consensus 573 ~--------~~~~~l~~lk~~Gf~GV~-NfPTvgliDG~fR~~LEe~ 610 (749)
. -+..++++|++. +. +-+||.. -.++++|++.
T Consensus 318 ~~~d~~~AGGvpavmk~L~~~----L~~d~lTVtG--~Tl~e~l~~~ 358 (577)
T PRK13016 318 LMEDFFYAGGLRALMKQLGDK----LHLDALTVTG--KTLGDNLEGA 358 (577)
T ss_pred cHHHHHHhcCHHHHHHHHHHH----hcCCCCCcCC--CCHHHHHcCC
Confidence 2 255678888886 32 4566654 3578888764
No 349
>PRK12309 transaldolase/EF-hand domain-containing protein; Provisional
Probab=71.87 E-value=20 Score=40.72 Aligned_cols=145 Identities=17% Similarity=0.225 Sum_probs=89.8
Q ss_pred chHHHHHhhhhhcCCCCCCceEEeeccCCCC--CCHHHHHHHHH-------HcCccc---eecCCcccccchhhhhhhhh
Q 004491 542 ANAVVLEMANEVLPVVKEVPVLAGVCGTDPF--RRVDYFLKQLE-------SIGFFG---VQNFPTVGLFDGNFRQNLEE 609 (749)
Q Consensus 542 aN~iv~e~~~eilp~v~~tPViaGv~atDP~--~~~~~~l~~lk-------~~Gf~G---V~NfPTvgliDG~fR~~LEe 609 (749)
++.+...++.+|++.++. +|-.=| ||. .+.+..+++-+ +.|..+ +.--|.. +.|
T Consensus 78 ~d~l~v~~g~~i~~~i~G-~Vs~EV---dprl~~d~~~~i~~A~~l~~~~~~~gi~~~~v~IKIPaT--~eG-------- 143 (391)
T PRK12309 78 FDRLAVAFGLKILKIVPG-RVSTEV---DARLSYDTEATIAKARKLISLYEDAGISRDRVLIKIAST--WEG-------- 143 (391)
T ss_pred HHHHHHHHHHHHHhcCCC-CEEEEE---ecccccCHHHHHHHHHHHHHHhhhhcCCCCcEEEEeCCC--HHH--------
Confidence 455666778899988763 676666 332 22333333333 334432 2223422 333
Q ss_pred cCCchHHHHHHHHHHHHcCCcccc-cccCHHHHHHHHhccCcEEEeccCCCcc---cccccc-cccCHHHHHHHHHHHHH
Q 004491 610 TGMGYGLEVEMIDKAHKMGLLTTP-YAFNEGEAVKMAKAGADIIVAHMGLTTS---GSIGAK-TALSLDESVDRVQAIAD 684 (749)
Q Consensus 610 ~G~gy~~EVemi~~A~~~gl~T~~-yvf~~eqa~~Ma~AGaDiiv~h~GlT~g---G~~Ga~-~~~sl~~~~~~~~~i~~ 684 (749)
++.++.-.+.|+-+.. .+|+.+||.+-++|||++|-+.+|.-.- -..|.+ -...-+-.+..+++|++
T Consensus 144 --------i~A~~~L~~~GI~~n~TlvFS~~QA~aaaeAGa~~ISPfVgRi~dw~~~~~g~~~~~~~~dpGv~~v~~i~~ 215 (391)
T PRK12309 144 --------IKAAEVLEKEGIHCNLTLLFGFHQAIACAEAGVTLISPFVGRILDWYKKETGRDSYPGAEDPGVQSVTQIYN 215 (391)
T ss_pred --------HHHHHHHHHCCCceeeeeecCHHHHHHHHHcCCCEEEeecchhhhhhhhccCCCccccccchHHHHHHHHHH
Confidence 5666666777887554 5999999999999999999999996422 001111 00112336677888888
Q ss_pred HHHHhCCCeEEEEccCCCCCHHHHHH
Q 004491 685 AAHRINPDAIVLCHGGPISSPSEAEF 710 (749)
Q Consensus 685 aa~~~~pdii~l~hGGPi~~p~d~~~ 710 (749)
..++.+.+..|| |.-+.+++++..
T Consensus 216 ~~~~~~~~T~Im--~ASfRn~~~v~~ 239 (391)
T PRK12309 216 YYKKFGYKTEVM--GASFRNIGEIIE 239 (391)
T ss_pred HHHhcCCCcEEE--ecccCCHHHHHH
Confidence 888888888888 555666665554
No 350
>cd06319 PBP1_ABC_sugar_binding_like_10 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=71.65 E-value=1.2e+02 Score=30.69 Aligned_cols=100 Identities=18% Similarity=0.311 Sum_probs=58.9
Q ss_pred HHHHHHHHHHHhcCccEEEEecCCCc---hHHHHHHHHcCCceEEEeCchhhhhhhhhCCccCCCCchhhhhhhcCCCeE
Q 004491 222 PCVNAVKERLEKEGYETMVFHATGVG---GRAMEALVKEGFIQGVLDITTTEVADYVVGGVMACDSSRFDATIEKKIPLV 298 (749)
Q Consensus 222 p~V~~~r~~Le~~GyEvlVFHATG~G---GrAME~Li~eG~~~gVlDlTttElaD~l~GGv~saGp~RL~AA~~~GIPqV 298 (749)
.-.+.+.+.+++.||++++|...+-- -.+.++|+.. .+||++=.... ....+..++.+.+.|||.|
T Consensus 16 ~~~~~i~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~~-~~dgiii~~~~----------~~~~~~~l~~~~~~~ipvV 84 (277)
T cd06319 16 IMGRGVKSKAKALGYDAVELSAENSAKKELENLRTAIDK-GVSGIIISPTN----------SSAAVTLLKLAAQAKIPVV 84 (277)
T ss_pred HHHHHHHHHHHhcCCeEEEecCCCCHHHHHHHHHHHHhc-CCCEEEEcCCc----------hhhhHHHHHHHHHCCCCEE
Confidence 34556666777789999999776532 2445666654 58888632221 0123455788888999998
Q ss_pred EecCccccccCCCCCCCCccccCCceeeecCcceEEecCHHH-HHHHHHHHHHHHc
Q 004491 299 LSVGALDMVNFGAKDTIPSKFQRRKIHVHNQQVSLMRTTVDE-NKKFAAFIANKLN 353 (749)
Q Consensus 299 VspGalDmVnFG~~dtvPe~f~~R~~~~HNp~vTlmRTt~eE-~~~ig~~iA~kLn 353 (749)
+. |... + +.. .+..+.++..+ -+++++.+++++.
T Consensus 85 ~~-------~~~~-----~---~~~------~~~~v~~d~~~~g~~~~~~l~~~~~ 119 (277)
T cd06319 85 IA-------DIGA-----E---GGD------YVSYIKSDNYEGAYDLGKFLAAAMK 119 (277)
T ss_pred EE-------ecCC-----C---CCc------eEEEEeeccHHHHHHHHHHHHHHHH
Confidence 74 2111 0 011 12335555555 4467777877776
No 351
>TIGR02712 urea_carbox urea carboxylase. Members of this family are ATP-dependent urea carboxylase, including characterized members from Oleomonas sagaranensis (alpha class Proteobacterium) and yeasts such as Saccharomyces cerevisiae. The allophanate hydrolase domain of the yeast enzyme is not included in this model and is represented by an adjacent gene in Oleomonas sagaranensis. The fusion of urea carboxylase and allophanate hydrolase is designated urea amidolyase. The enzyme from Oleomonas sagaranensis was shown to be highly active on acetamide and formamide as well as urea.
Probab=71.51 E-value=58 Score=42.22 Aligned_cols=116 Identities=19% Similarity=0.308 Sum_probs=79.5
Q ss_pred cCCCCCCHHHHHHHHHHcCccceecCCcccccc--hhhhhhhhhcCC---chHHHH--------HHHHHHHHcCCccccc
Q 004491 568 GTDPFRRVDYFLKQLESIGFFGVQNFPTVGLFD--GNFRQNLEETGM---GYGLEV--------EMIDKAHKMGLLTTPY 634 (749)
Q Consensus 568 atDP~~~~~~~l~~lk~~Gf~GV~NfPTvgliD--G~fR~~LEe~G~---gy~~EV--------emi~~A~~~gl~T~~y 634 (749)
..+.|.+.+..++-.++.|..+|. |..+... ..|.+.+|+.|+ |-+.|. .+=+.+++.|+-|.|+
T Consensus 55 ~~~sy~d~e~Il~~a~~~~idaIi--PG~gflsE~~~~a~~~e~~Gi~~iGps~ea~~~~~DK~~ar~ll~~~GVPt~p~ 132 (1201)
T TIGR02712 55 AAESYLDIDKILAAAKKTGAQAIH--PGYGFLSENAAFAEACEAAGIVFVGPTPEQIRKFGLKHTARELAEAAGVPLLPG 132 (1201)
T ss_pred cccCCCCHHHHHHHHHHHCCCEEE--eCCcccccCHHHHHHHHHcCCcEECCCHHHHHHhcCHHHHHHHHHHCCCCCCCc
Confidence 366889999999999999999885 6666543 678899999997 433332 3445678999999884
Q ss_pred ---ccCHHHHHHHH-hccCcEEEeccCCCcccccccccccCHHHHHHHHHHHHHHHH
Q 004491 635 ---AFNEGEAVKMA-KAGADIIVAHMGLTTSGSIGAKTALSLDESVDRVQAIADAAH 687 (749)
Q Consensus 635 ---vf~~eqa~~Ma-~AGaDiiv~h~GlT~gG~~Ga~~~~sl~~~~~~~~~i~~aa~ 687 (749)
+.|.+|+...+ +-|--+++==.. -+|..|.....+.+|..+..+++.+.++
T Consensus 133 ~~lv~s~dea~~~a~~igyPvVVKP~~--ggGG~GV~iv~~~eEL~~a~~~~~~~~~ 187 (1201)
T TIGR02712 133 TGLLSSLDEALEAAKEIGYPVMLKSTA--GGGGIGMQKCDSAAELAEAFETVKRLGE 187 (1201)
T ss_pred eeecCCHHHHHHHHHhcCCeEEEEECC--CCCCCCEEEECCHHHHHHHHHHHHHHHH
Confidence 46788887765 345444443222 2577887777777777666666554443
No 352
>cd02812 PcrB_like PcrB_like proteins. One member of this family, a protein from Archaeoglobus fulgidus, has been characterized as a (S)-3-O-geranylgeranylglyceryl phosphate synthase (AfGGGPS). AfGGGPS catalyzes the formation of an ether linkage between sn-glycerol-1-phosphate (G1P) and geranylgeranyl diphosphate (GGPP), the committed step in archaeal lipid biosynthesis. Therefore, it has been proposed that PcrB-like proteins are either prenyltransferases or are involved in lipoteichoic acid biosynthesis although the exact function is still unknown.
Probab=71.43 E-value=15 Score=38.79 Aligned_cols=79 Identities=20% Similarity=0.194 Sum_probs=49.3
Q ss_pred cCHHHHHHHHhccCcEEEeccCCCc-ccccccccccCHHHHHHHHHHHHHHHHHhCCCeEEEEccCCCCCHHHHHHHHhh
Q 004491 636 FNEGEAVKMAKAGADIIVAHMGLTT-SGSIGAKTALSLDESVDRVQAIADAAHRINPDAIVLCHGGPISSPSEAEFILKR 714 (749)
Q Consensus 636 f~~eqa~~Ma~AGaDiiv~h~GlT~-gG~~Ga~~~~sl~~~~~~~~~i~~aa~~~~pdii~l~hGGPi~~p~d~~~~l~~ 714 (749)
-++|++.+-+.|+=.+- .|+=-.. +|.. .. . ++.+..++.-.+ +.++.||-|.+|++++.+++.
T Consensus 132 ~~~e~~~ayA~aae~~g-~~ivyLe~SG~~-----~~----~----e~I~~v~~~~~~-~pl~vGGGIrs~e~a~~l~~a 196 (219)
T cd02812 132 LKPEDAAAYALAAEYLG-MPIVYLEYSGAY-----GP----P----EVVRAVKKVLGD-TPLIVGGGIRSGEQAKEMAEA 196 (219)
T ss_pred CCHHHHHHHHHHHHHcC-CeEEEeCCCCCc-----CC----H----HHHHHHHHhcCC-CCEEEeCCCCCHHHHHHHHHc
Confidence 56677777777665544 4432222 2221 11 1 223333333212 566779999999999999943
Q ss_pred CCCccEEecCcccccch
Q 004491 715 TKGVHGFYGASSMERLP 731 (749)
Q Consensus 715 ~~~~~Gf~g~Ss~ERlP 731 (749)
++++.+-||.+++=|
T Consensus 197 --GAD~VVVGsai~~~p 211 (219)
T cd02812 197 --GADTIVVGNIVEEDP 211 (219)
T ss_pred --CCCEEEECchhhCCH
Confidence 689999999999863
No 353
>PRK10936 TMAO reductase system periplasmic protein TorT; Provisional
Probab=71.43 E-value=1.5e+02 Score=32.00 Aligned_cols=82 Identities=17% Similarity=0.148 Sum_probs=51.3
Q ss_pred CCcEEEEeccCCchHHHH----HHHHHHHhcCccEEEEecCCCch-----HHHHHHHHcCCceEEEeCchhhhhhhhhCC
Q 004491 208 EKCTVGITMFGVTTPCVN----AVKERLEKEGYETMVFHATGVGG-----RAMEALVKEGFIQGVLDITTTEVADYVVGG 278 (749)
Q Consensus 208 ~kp~IgiTMFGvTTp~V~----~~r~~Le~~GyEvlVFHATG~GG-----rAME~Li~eG~~~gVlDlTttElaD~l~GG 278 (749)
....||+-.-..+.|... .+.+.+++.||+++++.+.+... ...+.|+..+ +||++=..+.. +
T Consensus 45 ~t~~Igvv~p~~~~~f~~~~~~gi~~aa~~~G~~l~i~~~~~~~~~~~q~~~i~~l~~~~-vdgIIl~~~~~--~----- 116 (343)
T PRK10936 45 KAWKLCALYPHLKDSYWLSVNYGMVEEAKRLGVDLKVLEAGGYYNLAKQQQQLEQCVAWG-ADAILLGAVTP--D----- 116 (343)
T ss_pred CCeEEEEEecCCCchHHHHHHHHHHHHHHHhCCEEEEEcCCCCCCHHHHHHHHHHHHHhC-CCEEEEeCCCh--H-----
Confidence 456788777666666655 45555666899999998765433 4566666655 89988443210 0
Q ss_pred ccCCCCchhhhhhhcCCCeEEec
Q 004491 279 VMACDSSRFDATIEKKIPLVLSV 301 (749)
Q Consensus 279 v~saGp~RL~AA~~~GIPqVVsp 301 (749)
.-.+.+ .+.+.|||.|..-
T Consensus 117 ---~~~~~l-~~~~~giPvV~~~ 135 (343)
T PRK10936 117 ---GLNPDL-ELQAANIPVIALV 135 (343)
T ss_pred ---HhHHHH-HHHHCCCCEEEec
Confidence 001235 5567899988653
No 354
>TIGR00514 accC acetyl-CoA carboxylase, biotin carboxylase subunit. This model represents the biotin carboxylase subunit found usually as a component of acetyl-CoA carboxylase. Acetyl-CoA carboxylase is designated EC 6.4.1.2 and this component, biotin carboxylase, has its own designation, EC 6.3.4.14. Homologous domains are found in eukaryotic forms of acetyl-CoA carboxylase and in a number of other carboxylases (e.g. pyruvate carboxylase), but seed members and trusted cutoff are selected so as to exclude these. In some systems, the biotin carboxyl carrier protein and this protein (biotin carboxylase) may be shared by different carboxyltransferases. However, this model is not intended to identify the biotin carboxylase domain of propionyl-coA carboxylase. The model should hit the full length of proteins, except for chloroplast transit peptides in plants. If it hits a domain only of a longer protein, there may be a problem with the identification.
Probab=71.26 E-value=87 Score=35.57 Aligned_cols=163 Identities=21% Similarity=0.325 Sum_probs=100.6
Q ss_pred eEEeccccchhhhhhhhcCCcEEEEeccccccccCCccccccccccCchHHHHHhhhhhcCCCCCCceEEeeccCC-CCC
Q 004491 495 IIGAGAGTGISAKFEEAGGVDLIVLYNSGRFRMAGRGSLAGLLPFADANAVVLEMANEVLPVVKEVPVLAGVCGTD-PFR 573 (749)
Q Consensus 495 iig~gaGtGlsAk~ae~gGaDli~~ynsGrfR~~G~~SlagllpygdaN~iv~e~~~eilp~v~~tPViaGv~atD-P~~ 573 (749)
|+|.|--.=..++.+.+-|...|++|+. .|.|..-..++.+...+ |-...+ -|.
T Consensus 7 i~g~g~~~~~~~~aa~~lG~~vv~~~~~-----------------~d~~a~~~~~aD~~~~~--------~~~~~~~~y~ 61 (449)
T TIGR00514 7 IANRGEIALRILRACKELGIKTVAVHST-----------------ADRDALHVLLADEAVCI--------GPAPSAKSYL 61 (449)
T ss_pred EeCCCHHHHHHHHHHHHcCCeEEEEECh-----------------hhhcccccccCCEEEEc--------CCCCchhchh
Confidence 3433333334577788889999887752 22333334445432111 111123 478
Q ss_pred CHHHHHHHHHHcCccceecCCcccc--cchhhhhhhhhcCC---chHHHH--------HHHHHHHHcCCcccccc----c
Q 004491 574 RVDYFLKQLESIGFFGVQNFPTVGL--FDGNFRQNLEETGM---GYGLEV--------EMIDKAHKMGLLTTPYA----F 636 (749)
Q Consensus 574 ~~~~~l~~lk~~Gf~GV~NfPTvgl--iDG~fR~~LEe~G~---gy~~EV--------emi~~A~~~gl~T~~yv----f 636 (749)
+.+.+++-.++.++.+|. |+.|. -++.|.+.+|+.|+ |-+.|. .+-+.+.+.|+-|.||. .
T Consensus 62 d~~~l~~~a~~~~id~I~--pg~g~~se~~~~a~~~e~~Gi~~~g~~~~~~~~~~DK~~~r~~l~~~gip~pp~~~~~~~ 139 (449)
T TIGR00514 62 NIPNIISAAEITGADAIH--PGYGFLSENANFAEQCERSGFTFIGPSAESIRLMGDKVSAIETMKKAGVPCVPGSDGLVE 139 (449)
T ss_pred CHHHHHHHHHHhCCCEEE--eCCCccccCHHHHHHHHHCCCcEECcCHHHHHHhCCHHHHHHHHHHCCCCCCCCcccCcC
Confidence 888888888888888884 44443 24667888899886 544443 45567889999998864 4
Q ss_pred CHHHHHHHH-hccCcEEEeccCCCcccccccccccCHHHHHHHHHHHHHHH
Q 004491 637 NEGEAVKMA-KAGADIIVAHMGLTTSGSIGAKTALSLDESVDRVQAIADAA 686 (749)
Q Consensus 637 ~~eqa~~Ma-~AGaDiiv~h~GlT~gG~~Ga~~~~sl~~~~~~~~~i~~aa 686 (749)
+.+|+.+.+ +-|--+|+=-. .-+|+.|.....+.+|..+..+++....
T Consensus 140 ~~~e~~~~~~~ig~PvvvKP~--~g~gs~Gv~~v~~~~el~~~~~~~~~~~ 188 (449)
T TIGR00514 140 DEEENVRIAKRIGYPVIIKAT--AGGGGRGMRVVREPDELVKSISMTRAEA 188 (449)
T ss_pred CHHHHHHHHHHhCCCEEEEeC--CCCCCCccEEECCHHHHHHHHHHHHHHH
Confidence 788877665 44655554322 2357788877888888777766655433
No 355
>PRK08057 cobalt-precorrin-6x reductase; Reviewed
Probab=71.15 E-value=16 Score=39.07 Aligned_cols=76 Identities=24% Similarity=0.281 Sum_probs=50.1
Q ss_pred ccCCchHHHHHHHHHHHhcCccEEEEecC---------------CC-chHHHHHHHHcCCceEEEeCchhhhhhhhhCCc
Q 004491 216 MFGVTTPCVNAVKERLEKEGYETMVFHAT---------------GV-GGRAMEALVKEGFIQGVLDITTTEVADYVVGGV 279 (749)
Q Consensus 216 MFGvTTp~V~~~r~~Le~~GyEvlVFHAT---------------G~-GGrAME~Li~eG~~~gVlDlTttElaD~l~GGv 279 (749)
.||=||-+- .+.+.|.+.||++++-=|| +. +-..|++++++..|+.|+|-|- =.|.++---
T Consensus 7 vlgGT~egr-~la~~L~~~g~~v~~Svat~~g~~~~~~~~v~~G~l~~~~~l~~~l~~~~i~~VIDATH-PfA~~is~~- 83 (248)
T PRK08057 7 LLGGTSEAR-ALARALAAAGVDIVLSLAGRTGGPADLPGPVRVGGFGGAEGLAAYLREEGIDLVIDATH-PYAAQISAN- 83 (248)
T ss_pred EEechHHHH-HHHHHHHhCCCeEEEEEccCCCCcccCCceEEECCCCCHHHHHHHHHHCCCCEEEECCC-ccHHHHHHH-
Confidence 356666633 3444556667877764444 44 3368999999999999999885 333333221
Q ss_pred cCCCCchhhhhhhcCCCeEEe
Q 004491 280 MACDSSRFDATIEKKIPLVLS 300 (749)
Q Consensus 280 ~saGp~RL~AA~~~GIPqVVs 300 (749)
=.+|+.+.|||++=.
T Consensus 84 ------a~~ac~~~~ipyiR~ 98 (248)
T PRK08057 84 ------AAAACRALGIPYLRL 98 (248)
T ss_pred ------HHHHHHHhCCcEEEE
Confidence 147889999999853
No 356
>PRK06131 dihydroxy-acid dehydratase; Validated
Probab=70.95 E-value=6.7 Score=46.52 Aligned_cols=273 Identities=16% Similarity=0.229 Sum_probs=165.0
Q ss_pred CcEEEEec-cCCchHHHH-------HHHHHHHhcCccEEEEecCCCc-hHH--------------HHHHHHcCCceEEEe
Q 004491 209 KCTVGITM-FGVTTPCVN-------AVKERLEKEGYETMVFHATGVG-GRA--------------MEALVKEGFIQGVLD 265 (749)
Q Consensus 209 kp~IgiTM-FGvTTp~V~-------~~r~~Le~~GyEvlVFHATG~G-GrA--------------ME~Li~eG~~~gVlD 265 (749)
||.|||-. |.--+||=. ++++-..+.|--...|++.+.+ |.+ .|.+++.-.|||++=
T Consensus 38 kP~IgI~ns~se~~Pch~hl~~l~~~vk~gi~~aGg~p~ef~ti~v~Dgi~~g~sL~sRelIAdsiE~~~~a~~~Dg~v~ 117 (571)
T PRK06131 38 RPIIGICNTWSDLNPCNAHFRQLAERVKRGVLEAGGFPVEFPVISLGESFLRPTAMLYRNLAAMDVEEMIRGYPIDGVVL 117 (571)
T ss_pred CCEEEEecccccCcCchhhHHHHHHHHHHHHHHcCCEEEecCccCccccccCccccccHHHHHHHHHHHHhcCCcceEEE
Confidence 99999866 888889854 4555666678899999999985 334 488888888999886
Q ss_pred CchhhhhhhhhCCccCCCCchhhhhhhcCCCeEEecCccccccCCCCCCCCccccCCcee------eecCcceEEecCHH
Q 004491 266 ITTTEVADYVVGGVMACDSSRFDATIEKKIPLVLSVGALDMVNFGAKDTIPSKFQRRKIH------VHNQQVSLMRTTVD 339 (749)
Q Consensus 266 lTttElaD~l~GGv~saGp~RL~AA~~~GIPqVVspGalDmVnFG~~dtvPe~f~~R~~~------~HNp~vTlmRTt~e 339 (749)
|.- ||-. -|.=|-||+|.+||.|+++|+-=+ |-+|+++++- +---+...=..+.|
T Consensus 118 i~~---CDK~-------~PG~lMaa~rlniPsi~v~gGpm~---------~G~~~g~~~~~~~~~~e~~g~~~~G~i~~e 178 (571)
T PRK06131 118 LGG---CDKT-------TPALLMGAASVDLPAIVLSGGPML---------NGKHKGERLGSGTDVWKYWEELRAGEIDLE 178 (571)
T ss_pred Eee---CCCC-------cHHHHHHHHhcCCCEEEEeCCCcC---------CCCCCCcCcccchhHHHHHHHHHcCCCCHH
Confidence 653 3333 456799999999999999996432 3344444331 10011122245666
Q ss_pred HHHHHHHHHHHHHccCCCCeEEEeeCCCCcccCCCCCCCCChhhhHHHHHHHHHhcccCCCceEEecCC-CCCCHHHHHH
Q 004491 340 ENKKFAAFIANKLNQSSSKIRLCLPQNGISALDAPGKPFYDPEATGTLISELRTLIQTNEDRQVKVYPH-NINDSEFADA 418 (749)
Q Consensus 340 E~~~ig~~iA~kLn~a~gpv~vllP~~G~S~lD~~G~pf~DPeAd~al~~~L~~~l~~~~~~~v~~~d~-hINDp~FA~a 418 (749)
|..++-+. .+++ -|-. .-.|=...-+.+.++|==.|+++..+ |+ +-.-..+++.
T Consensus 179 el~~~e~~------a~p~--------~GsC------~gmgTANTM~~~~EaLGl~LPgsa~~-----pA~~~~r~~~a~~ 233 (571)
T PRK06131 179 EFLEAEAG------MARS--------AGTC------NTMGTASTMACMAEALGMSLPGNAAI-----PAVDARRIRMAEL 233 (571)
T ss_pred HHHHHHHh------cCCC--------CCcc------ccchhHHHHHHHHHHHhcCCCcCcCC-----CCCCHHHHHHHHH
Confidence 66544321 2222 2221 23556667778888888888765422 21 2222346666
Q ss_pred HHHHHHHHHhccccccCCccccccccccccccccccCCCcccccCCCCCCCCCCcccccHHHHHHHHHHHhhcCCCeEEe
Q 004491 419 LVDSFLEISGKNLMAFSSAHHVSCERHEDSVSNIYSSSHGTICYSPSNFPDARPETLQRTQAILSKLKYQIDKGLPIIGA 498 (749)
Q Consensus 419 ~a~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~il~~L~~~i~~~~piig~ 498 (749)
..+++++|+++ +-||-.++||+.+...++--.+-|.
T Consensus 234 ag~~iv~lv~~---------------------------------------~i~prdIlT~~a~~NAi~v~~A~GG----- 269 (571)
T PRK06131 234 TGRRIVEMVHE---------------------------------------DLKPSDILTREAFENAIRVNAAIGG----- 269 (571)
T ss_pred HHHHHHHHHhc---------------------------------------CCCHHHhcCHHHHHHHHHHhcccCc-----
Confidence 66677776642 1356667888888777765544321
Q ss_pred ccccch---hhhhhhhcCCcEEEEeccccccccCCccccccccccCchHHHHHhhhhhcCCCCCCceEEeeccCCCCC--
Q 004491 499 GAGTGI---SAKFEEAGGVDLIVLYNSGRFRMAGRGSLAGLLPFADANAVVLEMANEVLPVVKEVPVLAGVCGTDPFR-- 573 (749)
Q Consensus 499 gaGtGl---sAk~ae~gGaDli~~ynsGrfR~~G~~SlagllpygdaN~iv~e~~~eilp~v~~tPViaGv~atDP~~-- 573 (749)
.|=. .--.|.++|+||=+ .|-| + +-++||+|+-+-..-||.
T Consensus 270 --STNavlHL~AIA~eagi~l~l---------------------~dfd--------~---is~~vP~l~~l~P~G~~~~~ 315 (571)
T PRK06131 270 --STNAVIHLIAIAGRAGVELDL---------------------DDWD--------R---IGRDVPVLVNLQPSGEYLME 315 (571)
T ss_pred --cccHHHHHHHHHHhcCCCCCH---------------------HHHH--------H---HhccCCeeEEecCCCcccHH
Confidence 1100 11245667777422 1111 1 124699999998888874
Q ss_pred ------CHHHHHHHHHHcCcccee--cCCcccccchhhhhhhhhc
Q 004491 574 ------RVDYFLKQLESIGFFGVQ--NFPTVGLFDGNFRQNLEET 610 (749)
Q Consensus 574 ------~~~~~l~~lk~~Gf~GV~--NfPTvgliDG~fR~~LEe~ 610 (749)
-+...+++|.+ .- +-+||.. -.++++|++.
T Consensus 316 d~~~aGGvp~vlk~L~~-----lL~~d~~TVtG--~tl~e~l~~~ 353 (571)
T PRK06131 316 DFYYAGGLPAVLRELGE-----LLHLDALTVNG--KTLGENLAGA 353 (571)
T ss_pred HHHHccCHHHHHHHHHH-----HhcCCCCCcCC--CCHHHHHhCC
Confidence 24567888888 22 3466543 3588888764
No 357
>cd00958 DhnA Class I fructose-1,6-bisphosphate (FBP) aldolases of the archaeal type (DhnA homologs) found in bacteria and archaea. Catalysis of the enzymes proceeds via a Schiff-base mechanism like other class I aldolases, although this subfamily is clearly divergent based on sequence similarity to other class I and class II (metal dependent) aldolase subfamilies.
Probab=70.87 E-value=77 Score=32.64 Aligned_cols=137 Identities=20% Similarity=0.239 Sum_probs=76.1
Q ss_pred CCCCHHHHHHHHHHcCccce--ecCCcccccchhhhhhhhhcCCchHHHHH-HHHHHHHcCCcccccccC----------
Q 004491 571 PFRRVDYFLKQLESIGFFGV--QNFPTVGLFDGNFRQNLEETGMGYGLEVE-MIDKAHKMGLLTTPYAFN---------- 637 (749)
Q Consensus 571 P~~~~~~~l~~lk~~Gf~GV--~NfPTvgliDG~fR~~LEe~G~gy~~EVe-mi~~A~~~gl~T~~yvf~---------- 637 (749)
++...-.-+++..+.|..+| |=+ .+..+ .++ ...++. +.+.|++.|+..+--++.
T Consensus 74 ~~~~~~~~v~~a~~~Ga~~v~~~~~--~~~~~--~~~--------~~~~i~~v~~~~~~~g~~~iie~~~~g~~~~~~~~ 141 (235)
T cd00958 74 NDKVLVASVEDAVRLGADAVGVTVY--VGSEE--ERE--------MLEELARVAAEAHKYGLPLIAWMYPRGPAVKNEKD 141 (235)
T ss_pred CchhhhcCHHHHHHCCCCEEEEEEe--cCCch--HHH--------HHHHHHHHHHHHHHcCCCEEEEEeccCCcccCccC
Confidence 33344444788889999887 433 11111 111 223333 344568888876643322
Q ss_pred HH---H-HHHHHhccCcEEEeccCCCcccccccccccCHHHHHHHHHHHHHHHHHhCCCeEEEEccCC-CCCHHH----H
Q 004491 638 EG---E-AVKMAKAGADIIVAHMGLTTSGSIGAKTALSLDESVDRVQAIADAAHRINPDAIVLCHGGP-ISSPSE----A 708 (749)
Q Consensus 638 ~e---q-a~~Ma~AGaDiiv~h~GlT~gG~~Ga~~~~sl~~~~~~~~~i~~aa~~~~pdii~l~hGGP-i~~p~d----~ 708 (749)
.+ + ++...++|||+|=.. .|. . .+..+++.+ ...-. |++-||+ +.+++| +
T Consensus 142 ~~~i~~~~~~a~~~GaD~Ik~~--~~~----------~----~~~~~~i~~---~~~~p--vv~~GG~~~~~~~~~l~~~ 200 (235)
T cd00958 142 PDLIAYAARIGAELGADIVKTK--YTG----------D----AESFKEVVE---GCPVP--VVIAGGPKKDSEEEFLKMV 200 (235)
T ss_pred HHHHHHHHHHHHHHCCCEEEec--CCC----------C----HHHHHHHHh---cCCCC--EEEeCCCCCCCHHHHHHHH
Confidence 33 3 455679999999885 221 1 222334433 33222 3455884 778877 6
Q ss_pred HHHHhhCCCccEEecCcccccchHHHHHHHHHHhhcc
Q 004491 709 EFILKRTKGVHGFYGASSMERLPVEQAITSTMRQYKS 745 (749)
Q Consensus 709 ~~~l~~~~~~~Gf~g~Ss~ERlP~E~ai~~~~~~FK~ 745 (749)
..+++ .+++|+.-++++=+-| -..+.+++|+.
T Consensus 201 ~~~~~--~Ga~gv~vg~~i~~~~---dp~~~~~~~~~ 232 (235)
T cd00958 201 YDAME--AGAAGVAVGRNIFQRP---DPVAMLRAISA 232 (235)
T ss_pred HHHHH--cCCcEEEechhhhcCC---CHHHHHHHHHH
Confidence 66664 5788998888775443 24445555554
No 358
>PRK10355 xylF D-xylose transporter subunit XylF; Provisional
Probab=70.64 E-value=15 Score=39.73 Aligned_cols=83 Identities=12% Similarity=0.130 Sum_probs=55.8
Q ss_pred CCCcEEEEeccCCchHHHHHH----HHHHHhcCccEEEEecCCCch---HHHHHHHHcCCceEEEeCchhhhhhhhhCCc
Q 004491 207 KEKCTVGITMFGVTTPCVNAV----KERLEKEGYETMVFHATGVGG---RAMEALVKEGFIQGVLDITTTEVADYVVGGV 279 (749)
Q Consensus 207 ~~kp~IgiTMFGvTTp~V~~~----r~~Le~~GyEvlVFHATG~GG---rAME~Li~eG~~~gVlDlTttElaD~l~GGv 279 (749)
.+++.||+.+-+...|.-+.+ .+.+++.||+++++.+..--- +..+.|+ +..+||++=....+
T Consensus 23 ~~~~~Ig~i~~~~~~~f~~~~~~gi~~~a~~~g~~l~i~~~~~~~~~~~~~i~~l~-~~~vDGiIi~~~~~--------- 92 (330)
T PRK10355 23 AKEVKIGMAIDDLRLERWQKDRDIFVKKAESLGAKVFVQSANGNEETQMSQIENMI-NRGVDVLVIIPYNG--------- 92 (330)
T ss_pred CCCceEEEEecCCCchHHHHHHHHHHHHHHHcCCEEEEECCCCCHHHHHHHHHHHH-HcCCCEEEEeCCCh---------
Confidence 358899999998888876665 555667899999986644322 2233444 45799998443210
Q ss_pred cCCCCchhhhhhhcCCCeEEe
Q 004491 280 MACDSSRFDATIEKKIPLVLS 300 (749)
Q Consensus 280 ~saGp~RL~AA~~~GIPqVVs 300 (749)
..-.+.+..+.++|||.|+.
T Consensus 93 -~~~~~~l~~~~~~~iPvV~i 112 (330)
T PRK10355 93 -QVLSNVIKEAKQEGIKVLAY 112 (330)
T ss_pred -hhHHHHHHHHHHCCCeEEEE
Confidence 01124578888999999986
No 359
>TIGR01108 oadA oxaloacetate decarboxylase alpha subunit. This model describes the bacterial oxaloacetate decarboxylase alpha subunit and its equivalents in archaea. The oxaloacetate decarboxylase Na+ pump is the paradigm of the family of Na+ transport decarboxylases that present in bacteria and archaea. It a multi subunit enzyme consisting of a peripheral alpha-subunit and integral membrane subunits beta and gamma. The energy released by the decarboxylation reaction of oxaloacetate is coupled to Na+ ion pumping across the membrane.
Probab=70.55 E-value=36 Score=40.71 Aligned_cols=113 Identities=20% Similarity=0.233 Sum_probs=69.4
Q ss_pred HhhhhhcCCCCCCceEEee-----ccCCCC--CCHHHHHHHHHHcCccceecCCcccccchhhhhhhhhcCCchHHHHHH
Q 004491 548 EMANEVLPVVKEVPVLAGV-----CGTDPF--RRVDYFLKQLESIGFFGVQNFPTVGLFDGNFRQNLEETGMGYGLEVEM 620 (749)
Q Consensus 548 e~~~eilp~v~~tPViaGv-----~atDP~--~~~~~~l~~lk~~Gf~GV~NfPTvgliDG~fR~~LEe~G~gy~~EVem 620 (749)
|..+++-..++++++.+=+ -+..+| --++.|+++..+.|..-|..|=...-+ +|+ .+.
T Consensus 59 e~l~~l~~~~~~~~l~~L~Rg~N~~G~~~ypddvv~~~v~~a~~~Gvd~irif~~lnd~-----~n~----------~~~ 123 (582)
T TIGR01108 59 ERLRELKKALPNTPLQMLLRGQNLLGYRHYADDVVERFVKKAVENGMDVFRIFDALNDP-----RNL----------QAA 123 (582)
T ss_pred HHHHHHHHhCCCCEEEEEEccccccccccCchhhHHHHHHHHHHCCCCEEEEEEecCcH-----HHH----------HHH
Confidence 3334444444567755432 234333 348899999999999988888333321 222 346
Q ss_pred HHHHHHcCCccc---ccccCH--------HHHHHHHhccCcEEEeccCCCcccccccccccCHHHHHHHHHHHHH
Q 004491 621 IDKAHKMGLLTT---PYAFNE--------GEAVKMAKAGADIIVAHMGLTTSGSIGAKTALSLDESVDRVQAIAD 684 (749)
Q Consensus 621 i~~A~~~gl~T~---~yvf~~--------eqa~~Ma~AGaDiiv~h~GlT~gG~~Ga~~~~sl~~~~~~~~~i~~ 684 (749)
++.|++.|+... .|.|++ +-++++.++|||.||+= =|.| ..+-.++.+++.++.+
T Consensus 124 i~~ak~~G~~v~~~i~~t~~p~~~~~~~~~~~~~~~~~Gad~I~i~--Dt~G-------~~~P~~v~~lv~~lk~ 189 (582)
T TIGR01108 124 IQAAKKHGAHAQGTISYTTSPVHTLETYLDLAEELLEMGVDSICIK--DMAG-------ILTPKAAYELVSALKK 189 (582)
T ss_pred HHHHHHcCCEEEEEEEeccCCCCCHHHHHHHHHHHHHcCCCEEEEC--CCCC-------CcCHHHHHHHHHHHHH
Confidence 689999998655 455554 56888899999998762 1222 2345556555555543
No 360
>PLN03228 methylthioalkylmalate synthase; Provisional
Probab=70.50 E-value=59 Score=38.33 Aligned_cols=126 Identities=17% Similarity=0.148 Sum_probs=67.1
Q ss_pred CceEEeeccCCCCCCHHHHHHHHHHcCccceecCCccccc--chhhhhhhhhcCCchHHHHHHHHHHHHcCCcccc----
Q 004491 560 VPVLAGVCGTDPFRRVDYFLKQLESIGFFGVQNFPTVGLF--DGNFRQNLEETGMGYGLEVEMIDKAHKMGLLTTP---- 633 (749)
Q Consensus 560 tPViaGv~atDP~~~~~~~l~~lk~~Gf~GV~NfPTvgli--DG~fR~~LEe~G~gy~~EVemi~~A~~~gl~T~~---- 633 (749)
.|.+.+.+-.++- +++.-++.++..|...|.=|.+++-+ .-+++...||. .++=.++++.|+++|+..+.
T Consensus 156 ~~~i~a~~R~~~~-dId~a~~a~~~a~~~~V~i~i~~Sd~h~~~kl~~s~ee~---l~~~~~~V~~Ak~~G~~~v~f~~E 231 (503)
T PLN03228 156 VPVICGIARCKKR-DIEAAWEALKYAKRPRILAFTSTSDIHMKYKLKKTKEEV---IEMAVSSIRYAKSLGFHDIQFGCE 231 (503)
T ss_pred ceEEeeecccCHh-hHHHHHHhhcccCCCEEEEEecCCHHHHHHHhCCCHHHH---HHHHHHHHHHHHHcCCceEEeccc
Confidence 4777766655543 66777776666677666655444422 12222223322 33336788999999974333
Q ss_pred ccc--CHH----HHHHHHhccCcEEEeccCCCcccccccccccCHHHHHHHHHHHHHHHHHhCCCeEEEEcc
Q 004491 634 YAF--NEG----EAVKMAKAGADIIVAHMGLTTSGSIGAKTALSLDESVDRVQAIADAAHRINPDAIVLCHG 699 (749)
Q Consensus 634 yvf--~~e----qa~~Ma~AGaDiiv~h~GlT~gG~~Ga~~~~sl~~~~~~~~~i~~aa~~~~pdii~l~hG 699 (749)
+.+ +++ -+++..++|||.|++ .=|.|.. +-++..+++..+.+..... +++.+=+|+
T Consensus 232 Da~Rtd~efl~~~~~~a~~~Gad~I~l--~DTvG~~-------tP~~v~~lV~~l~~~~~~~-~~i~I~~H~ 293 (503)
T PLN03228 232 DGGRSDKEFLCKILGEAIKAGATSVGI--ADTVGIN-------MPHEFGELVTYVKANTPGI-DDIVFSVHC 293 (503)
T ss_pred cccccCHHHHHHHHHHHHhcCCCEEEE--ecCCCCC-------CHHHHHHHHHHHHHHhccc-cCceeEecc
Confidence 222 333 345566899998643 3344433 4445555555554332221 345555555
No 361
>PRK00911 dihydroxy-acid dehydratase; Provisional
Probab=70.50 E-value=10 Score=44.98 Aligned_cols=281 Identities=19% Similarity=0.304 Sum_probs=167.1
Q ss_pred CCCcEEEE-eccCCchHHHHHH-------HHHHHhcCccEEEEecCCCchH--------------------HHHHHHHcC
Q 004491 207 KEKCTVGI-TMFGVTTPCVNAV-------KERLEKEGYETMVFHATGVGGR--------------------AMEALVKEG 258 (749)
Q Consensus 207 ~~kp~Igi-TMFGvTTp~V~~~-------r~~Le~~GyEvlVFHATG~GGr--------------------AME~Li~eG 258 (749)
-+||.||| +.|.--+||=.+. |+-..+.|--.+.|+..+++.- +.|.+++.-
T Consensus 29 l~kP~IgI~ns~se~~Pch~hl~~la~~Vk~gi~~aGg~p~ef~ti~~~Dgi~~g~~GM~ysL~sReliA~~iE~~~~a~ 108 (552)
T PRK00911 29 FDKPFIGIANSWNEITPCNIHLNELADAVKEGVRAAGGVPFEFNTIGVSDGIAMGHEGMKYSLVSREVIADSIETVVNAH 108 (552)
T ss_pred hcCCEEEEeccccccccchhhHHHHHHHHHHHHHHcCCEeEEeCCCccccccccCcccceehhhhHHHHHHHHHHHhhCC
Confidence 46999998 4677777986554 4455556888999998887322 458888999
Q ss_pred CceEEEeCchhhhhhhhhCCccCCCCchhhhhhhcCCCeEEecCccccccCCCCCCCCccccCCceeee-----cCcceE
Q 004491 259 FIQGVLDITTTEVADYVVGGVMACDSSRFDATIEKKIPLVLSVGALDMVNFGAKDTIPSKFQRRKIHVH-----NQQVSL 333 (749)
Q Consensus 259 ~~~gVlDlTttElaD~l~GGv~saGp~RL~AA~~~GIPqVVspGalDmVnFG~~dtvPe~f~~R~~~~H-----Np~vTl 333 (749)
.|||++=|.. ||-. -|.=|-||++.+||.|+++|+-= .|-.|++|++-.- --+...
T Consensus 109 ~~Dg~V~l~~---CDK~-------~Pg~lMaaarlniPsi~v~gGpm---------~~G~~~g~~~~~~~~~e~~g~~~~ 169 (552)
T PRK00911 109 WFDGLVAIPG---CDKN-------MPGMLMAAARLNVPSIFVYGGPI---------LPGRLKGKDLTLVSVFEAVGAYAA 169 (552)
T ss_pred CcceEEEecc---CCCC-------cHHHHHHHHhcCCCEEEEeCCCc---------CCCCCCCccccHHHHHHHHHHHHc
Confidence 9999986654 3332 46679999999999999999632 3556666642210 001112
Q ss_pred EecCHHHHHHHHHHHHHHHccCCCCeEEEeeCCCCcccCCCCCCCCChhhhHHHHHHHHHhcccCCCceEEecCC-CCCC
Q 004491 334 MRTTVDENKKFAAFIANKLNQSSSKIRLCLPQNGISALDAPGKPFYDPEATGTLISELRTLIQTNEDRQVKVYPH-NIND 412 (749)
Q Consensus 334 mRTt~eE~~~ig~~iA~kLn~a~gpv~vllP~~G~S~lD~~G~pf~DPeAd~al~~~L~~~l~~~~~~~v~~~d~-hIND 412 (749)
=+.|.||..++-+. .+++ -|-. .-.|=...-+.+.++|==.|+++..+ |+ +-.-
T Consensus 170 G~i~~ee~~~~e~~------a~ps--------~GsC------~~mgTANTM~~l~EaLGm~LPgsa~~-----pA~~~~r 224 (552)
T PRK00911 170 GKISEEELKEIERN------ACPG--------AGSC------GGMFTANTMACLIEALGMSLPGSGTI-----PAVDAER 224 (552)
T ss_pred CCCCHHHHHHHHHh------cCCC--------CCcc------cccchHHHHHHHHHHHhCCCCCCcCC-----CCCCHHH
Confidence 24455555443221 2222 1211 23556667778888888888765422 22 1122
Q ss_pred HHHHHHHHHHHHHHHhccccccCCccccccccccccccccccCCCcccccCCCCCCCCCCcccccHHHHHHHHHHHhhcC
Q 004491 413 SEFADALVDSFLEISGKNLMAFSSAHHVSCERHEDSVSNIYSSSHGTICYSPSNFPDARPETLQRTQAILSKLKYQIDKG 492 (749)
Q Consensus 413 p~FA~a~a~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~il~~L~~~i~~~ 492 (749)
.++|.....++++|+++ |-||-.++||+.+...++--.+-|
T Consensus 225 ~~~a~~~G~~iv~lv~~---------------------------------------~~~prdIlT~~a~~NAi~v~~A~G 265 (552)
T PRK00911 225 DELAREAGEAVVELLEK---------------------------------------DIKPRDILTREAFENAIAVDMALG 265 (552)
T ss_pred HHHHHHHHHHHHHHHHc---------------------------------------CCChHHhcCHHHHHHHHHHhcccC
Confidence 24566666666766643 245667788888887776554332
Q ss_pred CCeEEeccccch-hhhhhhhcCCcEEEEeccccccccCCccccccccccCchHHHHHhhhhhcCCCCCCceEEeeccCCC
Q 004491 493 LPIIGAGAGTGI-SAKFEEAGGVDLIVLYNSGRFRMAGRGSLAGLLPFADANAVVLEMANEVLPVVKEVPVLAGVCGTDP 571 (749)
Q Consensus 493 ~piig~gaGtGl-sAk~ae~gGaDli~~ynsGrfR~~G~~SlagllpygdaN~iv~e~~~eilp~v~~tPViaGv~atDP 571 (749)
. ..=+=| .--.|.++|+||=+ .| ..+| -++||+|+-+-..-|
T Consensus 266 G-----STNavlHL~AIA~eaGi~l~l---------------------~d--------fd~i---s~~vP~l~~~~P~G~ 308 (552)
T PRK00911 266 G-----STNAVLHLLAIAHEAGVDLTL---------------------DD--------FNRI---SKRTPHLADLKPSGK 308 (552)
T ss_pred c-----cccHHHHHHHHHHhcCCCCCH---------------------HH--------HHHH---hccCCceeeecCCCh
Confidence 1 000000 11245566777422 11 1121 236999999988888
Q ss_pred CC--------CHHHHHHHHHHcCccceecCCcccccchhhhhhhhhc
Q 004491 572 FR--------RVDYFLKQLESIGFFGVQNFPTVGLFDGNFRQNLEET 610 (749)
Q Consensus 572 ~~--------~~~~~l~~lk~~Gf~GV~NfPTvgliDG~fR~~LEe~ 610 (749)
|. -++.++++|++.|+= =.+-+||.. -.++++|++.
T Consensus 309 ~~~~dl~~AGGvpavlk~L~~~glL-~~d~~TVtG--~Tl~e~l~~~ 352 (552)
T PRK00911 309 YVMEDLHEAGGIPAVMKELLDAGLL-HGDCLTVTG--KTLAENLADA 352 (552)
T ss_pred HHHHHHHHcCCHHHHHHHHHHCCCc-CCCCCCcCC--CCHHHHHhcC
Confidence 74 245668899988761 113456543 3588888873
No 362
>PF04055 Radical_SAM: Radical SAM superfamily; InterPro: IPR007197 Radical SAM proteins catalyze diverse reactions, including unusual methylations, isomerization, sulphur insertion, ring formation, anaerobic oxidation and protein radical formation. Evidence exists that these proteins generate a radical species by reductive cleavage of S:-adenosylmethionine (SAM) through an unusual Fe-S centre [, ].; GO: 0003824 catalytic activity, 0051536 iron-sulfur cluster binding; PDB: 2A5H_D 3T7V_A 3C8F_A 3CB8_A 2FB2_A 2FB3_A 3CIX_A 3IIX_A 3IIZ_A 3CIW_A ....
Probab=70.43 E-value=9.7 Score=34.96 Aligned_cols=127 Identities=14% Similarity=0.164 Sum_probs=77.2
Q ss_pred CCCHHHHHHHHHHcC-ccceecCCcccccchhhhhhhhhcCCchHHHHHHHHHHHHc-------CCcccccccCHHHHHH
Q 004491 572 FRRVDYFLKQLESIG-FFGVQNFPTVGLFDGNFRQNLEETGMGYGLEVEMIDKAHKM-------GLLTTPYAFNEGEAVK 643 (749)
Q Consensus 572 ~~~~~~~l~~lk~~G-f~GV~NfPTvgliDG~fR~~LEe~G~gy~~EVemi~~A~~~-------gl~T~~yvf~~eqa~~ 643 (749)
+...+++++.+++.. ..| ...+.+-+|.+-. +....+++..+++. .+.|-++.-+.+..+.
T Consensus 27 ~~~~e~i~~~~~~~~~~~~---~~~i~~~~gep~~--------~~~~~~~~~~~~~~~~~~~~i~~~t~~~~~~~~~l~~ 95 (166)
T PF04055_consen 27 EMSPEEILEEIKELKQDKG---VKEIFFGGGEPTL--------HPDFIELLELLRKIKKRGIRISINTNGTLLDEELLDE 95 (166)
T ss_dssp ECHHHHHHHHHHHHHHHTT---HEEEEEESSTGGG--------SCHHHHHHHHHHHCTCTTEEEEEEEESTTHCHHHHHH
T ss_pred cCCHHHHHHHHHHHhHhcC---CcEEEEeecCCCc--------chhHHHHHHHHHHhhccccceeeeccccchhHHHHHH
Confidence 345566666665553 222 2223333444333 24455666666665 3567777777999999
Q ss_pred HHhccCcEEEeccCCCccc-cccc-ccccCHHHHHHHHHHHHHHHHHhC-CCeEEEEccCCCCCHHHHHHHHh
Q 004491 644 MAKAGADIIVAHMGLTTSG-SIGA-KTALSLDESVDRVQAIADAAHRIN-PDAIVLCHGGPISSPSEAEFILK 713 (749)
Q Consensus 644 Ma~AGaDiiv~h~GlT~gG-~~Ga-~~~~sl~~~~~~~~~i~~aa~~~~-pdii~l~hGGPi~~p~d~~~~l~ 713 (749)
|.++|.|.+-.++--..-. ..-. ....+.++..+.++.+ ++.. +.++.+..|.|-.+.+|++.+++
T Consensus 96 l~~~~~~~i~~~l~s~~~~~~~~~~~~~~~~~~~~~~l~~l----~~~g~~~~~~~i~~~~~~~~~e~~~~~~ 164 (166)
T PF04055_consen 96 LKKLGVDRIRISLESLDEESVLRIINRGKSFERVLEALERL----KEAGIPRVIIFIVGLPGENDEEIEETIR 164 (166)
T ss_dssp HHHTTCSEEEEEEBSSSHHHHHHHHSSTSHHHHHHHHHHHH----HHTTSETEEEEEEEBTTTSHHHHHHHHH
T ss_pred HHhcCccEEecccccCCHHHhhhhhcCCCCHHHHHHHHHHH----HHcCCCcEEEEEEEeCCCCHHHHHHHhC
Confidence 9999988887776644443 1111 1334555555444444 4432 23888899999999999998875
No 363
>PRK08462 biotin carboxylase; Validated
Probab=70.24 E-value=1e+02 Score=34.80 Aligned_cols=149 Identities=19% Similarity=0.275 Sum_probs=98.0
Q ss_pred hhhhhhhcCCcEEEEeccccccccCCccccccccccCchHHHHHhhhhhcCCCCCCceEEeecc-CCCCCCHHHHHHHHH
Q 004491 505 SAKFEEAGGVDLIVLYNSGRFRMAGRGSLAGLLPFADANAVVLEMANEVLPVVKEVPVLAGVCG-TDPFRRVDYFLKQLE 583 (749)
Q Consensus 505 sAk~ae~gGaDli~~ynsGrfR~~G~~SlagllpygdaN~iv~e~~~eilp~v~~tPViaGv~a-tDP~~~~~~~l~~lk 583 (749)
..|.+.+-|..-|.+|+. .|.|..-..+|.|.. .-|-.. .+.|.+.+..++-.+
T Consensus 19 ~~~~~~~~G~~~v~~~~~-----------------~d~~~~~~~~ad~~~--------~~~~~~~~~~y~~~~~l~~~~~ 73 (445)
T PRK08462 19 AIRTIQEMGKEAIAIYST-----------------ADKDALYLKYADAKI--------CIGGAKSSESYLNIPAIISAAE 73 (445)
T ss_pred HHHHHHHcCCCEEEEech-----------------hhcCCchhhhCCEEE--------EeCCCchhcccCCHHHHHHHHH
Confidence 346667777777777642 244445555665522 112122 358899999999999
Q ss_pred HcCccceecCCcccccc--hhhhhhhhhcCC---chHHHH--------HHHHHHHHcCCcccccc----cCHHHHHHHH-
Q 004491 584 SIGFFGVQNFPTVGLFD--GNFRQNLEETGM---GYGLEV--------EMIDKAHKMGLLTTPYA----FNEGEAVKMA- 645 (749)
Q Consensus 584 ~~Gf~GV~NfPTvgliD--G~fR~~LEe~G~---gy~~EV--------emi~~A~~~gl~T~~yv----f~~eqa~~Ma- 645 (749)
+.++.+|. |+.|... ..|.+.+|+.|+ |-+.|. .|-+.+++.|+-|.|+. .+.+++.+.+
T Consensus 74 ~~~~D~i~--pg~g~lse~~~~a~~~e~~Gi~~~g~~~~~~~~~~dK~~~r~~l~~~gIp~pp~~~~~~~~~~~~~~~~~ 151 (445)
T PRK08462 74 IFEADAIF--PGYGFLSENQNFVEICSHHNIKFIGPSVEVMALMSDKSKAKEVMKRAGVPVIPGSDGALKSYEEAKKIAK 151 (445)
T ss_pred HcCCCEEE--ECCCccccCHHHHHHHHHCCCeEECcCHHHHHHhCCHHHHHHHHHHCCCCCCCCcccccCCHHHHHHHHH
Confidence 99999884 6766543 567788999896 544443 45566889999998864 3678887664
Q ss_pred hccCcEEEeccCCCcccccccccccCHHHHHHHHHHH
Q 004491 646 KAGADIIVAHMGLTTSGSIGAKTALSLDESVDRVQAI 682 (749)
Q Consensus 646 ~AGaDiiv~h~GlT~gG~~Ga~~~~sl~~~~~~~~~i 682 (749)
+.|--+++=-.. -+|+.|.....+.+|..+..+..
T Consensus 152 ~~g~PvvvKP~~--g~gs~Gv~~v~~~~eL~~~~~~~ 186 (445)
T PRK08462 152 EIGYPVILKAAA--GGGGRGMRVVEDESDLENLYLAA 186 (445)
T ss_pred HcCCCEEEEeCC--CCCCCCeEEECCHHHHHHHHHHH
Confidence 556666654433 25778887777777766555443
No 364
>cd01568 QPRTase_NadC Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other.
Probab=69.96 E-value=29 Score=37.31 Aligned_cols=192 Identities=20% Similarity=0.213 Sum_probs=112.2
Q ss_pred Eeccccchhhhhhhhc-CCcEEEEeccccccccCCccccccccccCchHHHH---------H-------hhhhhcCCCCC
Q 004491 497 GAGAGTGISAKFEEAG-GVDLIVLYNSGRFRMAGRGSLAGLLPFADANAVVL---------E-------MANEVLPVVKE 559 (749)
Q Consensus 497 g~gaGtGlsAk~ae~g-GaDli~~ynsGrfR~~G~~SlagllpygdaN~iv~---------e-------~~~eilp~v~~ 559 (749)
|+-+|.-...+..+.- |..+...+..|..=..|-.-+.- .|++-++.+ + .++++.-.+++
T Consensus 39 ~v~~G~~~~~~i~~~~~~~~v~~~~~dG~~v~~g~~i~~i---~G~~~~l~~~Er~~ln~L~~~sgIAT~t~~~v~~a~~ 115 (269)
T cd01568 39 GVLAGLEVAEEVFELLDGIEVEWLVKDGDRVEAGQVLLEV---EGPARSLLTAERVALNLLQRLSGIATATRRYVEAARG 115 (269)
T ss_pred EEEECHHHHHHHHHHhCCeEEEEEeCCCCEecCCCEEEEE---EEcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 4456677777777776 77777777777654444321110 123322221 0 12344444455
Q ss_pred Cc-eEEeeccCCCCCCHHHHHHHHHHcCccceec-----CCcccccchhhhhhhhhcCCchHHHHHHHHHHHHcC---Cc
Q 004491 560 VP-VLAGVCGTDPFRRVDYFLKQLESIGFFGVQN-----FPTVGLFDGNFRQNLEETGMGYGLEVEMIDKAHKMG---LL 630 (749)
Q Consensus 560 tP-ViaGv~atDP~~~~~~~l~~lk~~Gf~GV~N-----fPTvgliDG~fR~~LEe~G~gy~~EVemi~~A~~~g---l~ 630 (749)
.+ .+++---|-|. +..|-++--..| |-.| +.++-+.|-++.- .| +.+ +.++.+|++. ..
T Consensus 116 ~~~~i~~TRKt~Pg--~r~~~k~Av~~G--Gg~~hR~~L~d~ilikdnHi~~----~g-~~~---~~v~~~r~~~~~~~~ 183 (269)
T cd01568 116 TKARIADTRKTTPG--LRLLEKYAVRAG--GGDNHRLGLSDAVLIKDNHIAA----AG-GIT---EAVKRARAAAPFEKK 183 (269)
T ss_pred CCEEEeecCCCChh--hHHHHHHHHHhC--CCccccCCCcceeeecHhHHHH----hC-CHH---HHHHHHHHhCCCCCe
Confidence 44 56666666666 445555555555 6566 3566666665432 23 222 4567777763 44
Q ss_pred ccccccCHHHHHHHHhccCcEEEeccCCCcccccccccccCHHHHHHHHHHHHHHHHHhCCCeEEEEccCCCCCHHHHHH
Q 004491 631 TTPYAFNEGEAVKMAKAGADIIVAHMGLTTSGSIGAKTALSLDESVDRVQAIADAAHRINPDAIVLCHGGPISSPSEAEF 710 (749)
Q Consensus 631 T~~yvf~~eqa~~Ma~AGaDiiv~h~GlT~gG~~Ga~~~~sl~~~~~~~~~i~~aa~~~~pdii~l~hGGPi~~p~d~~~ 710 (749)
-..=|-|.+|+.+..++|||+|..- ..+.++. +++.+..++. |++.+.+-|| -+++.+..
T Consensus 184 I~vev~t~eea~~A~~~gaD~I~ld-------------~~~~e~l----~~~v~~i~~~-~~i~i~asGG--It~~ni~~ 243 (269)
T cd01568 184 IEVEVETLEEAEEALEAGADIIMLD-------------NMSPEEL----KEAVKLLKGL-PRVLLEASGG--ITLENIRA 243 (269)
T ss_pred EEEecCCHHHHHHHHHcCCCEEEEC-------------CCCHHHH----HHHHHHhccC-CCeEEEEECC--CCHHHHHH
Confidence 4455789999999999999999872 1233333 2232223333 6888888888 68999998
Q ss_pred HHhhCCCccEEecCc
Q 004491 711 ILKRTKGVHGFYGAS 725 (749)
Q Consensus 711 ~l~~~~~~~Gf~g~S 725 (749)
+.+ .+++++.-+|
T Consensus 244 ~a~--~Gad~Isvga 256 (269)
T cd01568 244 YAE--TGVDVISTGA 256 (269)
T ss_pred HHH--cCCCEEEEcH
Confidence 874 5788886544
No 365
>COG0800 Eda 2-keto-3-deoxy-6-phosphogluconate aldolase [Carbohydrate transport and metabolism]
Probab=69.90 E-value=71 Score=33.78 Aligned_cols=166 Identities=20% Similarity=0.243 Sum_probs=110.4
Q ss_pred HhcccCCCceEEecCCCCCCHHHHHHHHHHHHHHHhccccccCCccccccccccccccccccCCCcccccCCCCCCCCCC
Q 004491 393 TLIQTNEDRQVKVYPHNINDSEFADALVDSFLEISGKNLMAFSSAHHVSCERHEDSVSNIYSSSHGTICYSPSNFPDARP 472 (749)
Q Consensus 393 ~~l~~~~~~~v~~~d~hINDp~FA~a~a~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 472 (749)
+.+...+.+.|+ -++|++=|..++++|.+==-. .-++.++||-
T Consensus 8 ~~l~~~~vI~Vl----r~~~~e~a~~~a~Ali~gGi~--------------------------~IEITl~sp~------- 50 (211)
T COG0800 8 SKLKAQPVVPVI----RGDDVEEALPLAKALIEGGIP--------------------------AIEITLRTPA------- 50 (211)
T ss_pred HHHHHCCeeEEE----EeCCHHHHHHHHHHHHHcCCC--------------------------eEEEecCCCC-------
Confidence 333334556776 578999999999888651000 1112233432
Q ss_pred cccccHHHHHHHHHHHhhcCCCeEEeccccchhh---hhhhhcCCcEEEEeccccccccCCccccccccccCchHHHHHh
Q 004491 473 ETLQRTQAILSKLKYQIDKGLPIIGAGAGTGISA---KFEEAGGVDLIVLYNSGRFRMAGRGSLAGLLPFADANAVVLEM 549 (749)
Q Consensus 473 ~~~~~r~~il~~L~~~i~~~~piig~gaGtGlsA---k~ae~gGaDli~~ynsGrfR~~G~~SlagllpygdaN~iv~e~ 549 (749)
-.|.++.|+++.. +-+|| |||=|++ +.+.+.|+|||| =-|.|.-|.+.
T Consensus 51 -----a~e~I~~l~~~~p--~~lIG--AGTVL~~~q~~~a~~aGa~fiV--------------------sP~~~~ev~~~ 101 (211)
T COG0800 51 -----ALEAIRALAKEFP--EALIG--AGTVLNPEQARQAIAAGAQFIV--------------------SPGLNPEVAKA 101 (211)
T ss_pred -----HHHHHHHHHHhCc--ccEEc--cccccCHHHHHHHHHcCCCEEE--------------------CCCCCHHHHHH
Confidence 2357777777766 55554 5666654 567789999999 45678889988
Q ss_pred hhhhcCCCCCCceEEeeccCCCCCCHHHHHHHHHHcCccceecCCcccccchhhhhhhhhcCCchHHHHHHHHHHHHcCC
Q 004491 550 ANEVLPVVKEVPVLAGVCGTDPFRRVDYFLKQLESIGFFGVQNFPTVGLFDGNFRQNLEETGMGYGLEVEMIDKAHKMGL 629 (749)
Q Consensus 550 ~~eilp~v~~tPViaGv~atDP~~~~~~~l~~lk~~Gf~GV~NfPTvgliDG~fR~~LEe~G~gy~~EVemi~~A~~~gl 629 (749)
+++ +++|++=|+.- ..=+-...++|++.+-+||--.+---.|.++| .|.
T Consensus 102 a~~-----~~ip~~PG~~T-------ptEi~~Ale~G~~~lK~FPa~~~Gg~~~~ka~-------------------~gP 150 (211)
T COG0800 102 ANR-----YGIPYIPGVAT-------PTEIMAALELGASALKFFPAEVVGGPAMLKAL-------------------AGP 150 (211)
T ss_pred HHh-----CCCcccCCCCC-------HHHHHHHHHcChhheeecCccccCcHHHHHHH-------------------cCC
Confidence 865 57788877642 33456778999999999997665544444444 455
Q ss_pred cc-cccc----cCHHHHHHHHhccCcEEEeccC
Q 004491 630 LT-TPYA----FNEGEAVKMAKAGADIIVAHMG 657 (749)
Q Consensus 630 ~T-~~yv----f~~eqa~~Ma~AGaDiiv~h~G 657 (749)
|. +.|+ -|.+.++.-..+| ++|+-+|
T Consensus 151 ~~~v~~~pTGGVs~~N~~~yla~g--v~avG~G 181 (211)
T COG0800 151 FPQVRFCPTGGVSLDNAADYLAAG--VVAVGLG 181 (211)
T ss_pred CCCCeEeecCCCCHHHHHHHHhCC--ceEEecC
Confidence 55 4444 3678999999999 7777655
No 366
>PRK06256 biotin synthase; Validated
Probab=69.89 E-value=14 Score=40.11 Aligned_cols=74 Identities=20% Similarity=0.192 Sum_probs=47.6
Q ss_pred ccCHHHHHHHHhccCcEEEeccCCCccccc--ccccccCHHHHHHHHHHHHHHHHHhCCCeEEEEccCCCCCHHHHHHHH
Q 004491 635 AFNEGEAVKMAKAGADIIVAHMGLTTSGSI--GAKTALSLDESVDRVQAIADAAHRINPDAIVLCHGGPISSPSEAEFIL 712 (749)
Q Consensus 635 vf~~eqa~~Ma~AGaDiiv~h~GlT~gG~~--Ga~~~~sl~~~~~~~~~i~~aa~~~~pdii~l~hGGPi~~p~d~~~~l 712 (749)
..++|+++.|.+||+|-+.. |+-+.-.+ -..+..+.++.++.++.+.++--.++..+|+ -+| .+++|....+
T Consensus 149 ~l~~e~l~~LkeaG~~~v~~--~lEts~~~~~~i~~~~t~~~~i~~i~~a~~~Gi~v~~~~I~-Glg---Et~ed~~~~~ 222 (336)
T PRK06256 149 LLTEEQAERLKEAGVDRYNH--NLETSRSYFPNVVTTHTYEDRIDTCEMVKAAGIEPCSGGII-GMG---ESLEDRVEHA 222 (336)
T ss_pred cCCHHHHHHHHHhCCCEEec--CCccCHHHHhhcCCCCCHHHHHHHHHHHHHcCCeeccCeEE-eCC---CCHHHHHHHH
Confidence 37899999999999998755 43321111 1133457888887777777766566665544 233 5777777666
Q ss_pred hh
Q 004491 713 KR 714 (749)
Q Consensus 713 ~~ 714 (749)
+.
T Consensus 223 ~~ 224 (336)
T PRK06256 223 FF 224 (336)
T ss_pred HH
Confidence 44
No 367
>cd08555 PI-PLCc_GDPD_SF Catalytic domain of phosphoinositide-specific phospholipase C-like phosphodiesterases superfamily. The PI-PLC-like phosphodiesterases superfamily represents the catalytic domains of bacterial phosphatidylinositol-specific phospholipase C (PI-PLC, EC 4.6.1.13), eukaryotic phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11), glycerophosphodiester phosphodiesterases (GP-GDE, EC 3.1.4.46), sphingomyelinases D (SMases D) (sphingomyelin phosphodiesterase D, EC 3.1.4.41) from spider venom, SMases D-like proteins, and phospholipase D (PLD) from several pathogenic bacteria, as well as their uncharacterized homologs found in organisms ranging from bacteria and archaea to metazoans, plants, and fungi. PI-PLCs are ubiquitous enzymes hydrolyzing the membrane lipid phosphoinositides to yield two important second messengers, inositol phosphates and diacylglycerol (DAG). GP-GDEs play essential roles in glycerol metabolism and catalyze the hydrolysis of glycerophosph
Probab=69.88 E-value=5.7 Score=39.38 Aligned_cols=36 Identities=31% Similarity=0.489 Sum_probs=33.3
Q ss_pred HHHHHHHHcCCcccccccC--HHHHHHHHhccCcEEEe
Q 004491 619 EMIDKAHKMGLLTTPYAFN--EGEAVKMAKAGADIIVA 654 (749)
Q Consensus 619 emi~~A~~~gl~T~~yvf~--~eqa~~Ma~AGaDiiv~ 654 (749)
++++.||+.|+...+|..| +++++++.+.|+|.|+.
T Consensus 140 ~~v~~~~~~g~~v~~wtvn~~~~~~~~l~~~Gvd~i~T 177 (179)
T cd08555 140 ELIASANKLGLLSRIWTVNDNNEIINKFLNLGVDGLIT 177 (179)
T ss_pred HHHHHHHHCCCEEEEEeeCChHHHHHHHHHcCCCEEeC
Confidence 6799999999999999988 79999999999999974
No 368
>cd08205 RuBisCO_IV_RLP Ribulose bisphosphate carboxylase like proteins, Rubisco-Form IV. Ribulose bisphosphate carboxylase (Rubisco) plays an important role in the Calvin reductive pentose phosphate pathway. It catalyzes the primary CO2 fixation step. Rubisco is activated by carbamylation of an active site lysine, stabilized by a divalent cation, which then catalyzes the proton abstraction from the substrate ribulose 1,5 bisphosphate (RuBP) and leads to the formation of two molecules of 3-phosphoglycerate. Members of the Rubisco family can be divided into 4 subgroups, Form I-IV, which differ in their taxonomic distribution and subunit composition. Form I-III have Rubisco activity, while Form IV, also called Rubisco-like proteins (RLP), are missing critical active site residues and therefore do not catalyze CO2 fixation. They are believed to utilize a related enzymatic mechanism, but have divergent functions, like for example 2,3-diketo-5-methylthiopentyl-1-phosphate enolase or 5-methyl
Probab=69.65 E-value=1e+02 Score=34.73 Aligned_cols=120 Identities=18% Similarity=0.183 Sum_probs=72.1
Q ss_pred CCCCCCCCCcccccHHHHHHHHHHHhhc-CCCeEEeccc--cchhh----h---hhhhcCCcEEEEe-ccccccccCCcc
Q 004491 464 PSNFPDARPETLQRTQAILSKLKYQIDK-GLPIIGAGAG--TGISA----K---FEEAGGVDLIVLY-NSGRFRMAGRGS 532 (749)
Q Consensus 464 ~~~~~~~~~~~~~~r~~il~~L~~~i~~-~~piig~gaG--tGlsA----k---~ae~gGaDli~~y-nsGrfR~~G~~S 532 (749)
|..|-++=|..-+-- +.+|+.+.. ++|+++.-.= .|++. + ..-.+|+|+|... +.|-+
T Consensus 104 P~~~~~~f~GP~fGi----~g~R~~~gv~~rPli~Ti~kp~~gld~~~la~~~~~l~~gGvD~Ikdde~~ge~------- 172 (367)
T cd08205 104 PDSLLAAFPGPRFGI----EGLRRLLGVHDRPLLGTIIKPSIGLSPEELAELAYELALGGIDLIKDDELLADQ------- 172 (367)
T ss_pred CHHHHhhCCCCCCCc----hhHHHHhCCCCCCeeeeeeCCCCCCCHHHHHHHHHHHHhcCCCeeeccccccCc-------
Confidence 333333334444443 344444444 8999886432 24443 2 3346899999753 33333
Q ss_pred ccccccccCchHHHHHhhhhhcCCCCCCce-EEeeccCCCCCCHHHHHHHHHHcCccce-ecCCcccc
Q 004491 533 LAGLLPFADANAVVLEMANEVLPVVKEVPV-LAGVCGTDPFRRVDYFLKQLESIGFFGV-QNFPTVGL 598 (749)
Q Consensus 533 lagllpygdaN~iv~e~~~eilp~v~~tPV-iaGv~atDP~~~~~~~l~~lk~~Gf~GV-~NfPTvgl 598 (749)
.++||..-=+.+++..+++=....+.++ ++++++. ..+|-++.+..++.|-.+| .|+|+.|+
T Consensus 173 --~~~~~eER~~~v~~av~~a~~~TG~~~~y~~nit~~--~~e~i~~a~~a~~~Gad~vmv~~~~~g~ 236 (367)
T cd08205 173 --PYAPFEERVRACMEAVRRANEETGRKTLYAPNITGD--PDELRRRADRAVEAGANALLINPNLVGL 236 (367)
T ss_pred --ccCCHHHHHHHHHHHHHHHHHhhCCcceEEEEcCCC--HHHHHHHHHHHHHcCCCEEEEecccccc
Confidence 4567776666677666655444445454 4445543 4999999999999998776 56676554
No 369
>PRK05692 hydroxymethylglutaryl-CoA lyase; Provisional
Probab=69.48 E-value=37 Score=36.83 Aligned_cols=123 Identities=17% Similarity=0.211 Sum_probs=79.3
Q ss_pred CHHHHHHHHHHcCccceec--------CCcccccchhhhhhhhhcCCchHHHHHHHHHHHHcCCcccccccCHHHHHHHH
Q 004491 574 RVDYFLKQLESIGFFGVQN--------FPTVGLFDGNFRQNLEETGMGYGLEVEMIDKAHKMGLLTTPYAFNEGEAVKMA 645 (749)
Q Consensus 574 ~~~~~l~~lk~~Gf~GV~N--------fPTvgliDG~fR~~LEe~G~gy~~EVemi~~A~~~gl~T~~yvf~~eqa~~Ma 645 (749)
+.-++++.|.+.||.=|.= ||.++ +. ...+..|.+ ..+.--..++-|.++.++-.
T Consensus 27 ~k~~ia~~L~~~Gv~~IEvgsf~~p~~~p~~~-------d~--------~e~~~~l~~--~~~~~~~~l~~~~~~ie~A~ 89 (287)
T PRK05692 27 DKIALIDRLSAAGLSYIEVASFVSPKWVPQMA-------DA--------AEVMAGIQR--RPGVTYAALTPNLKGLEAAL 89 (287)
T ss_pred HHHHHHHHHHHcCCCEEEeCCCcCcccccccc-------cH--------HHHHHhhhc--cCCCeEEEEecCHHHHHHHH
Confidence 4567888999999876643 33322 00 122333432 23433345566899999999
Q ss_pred hccCcEEEeccCCCcccccccccccCHHHHHHHHHHHHHHHHHhCCCeE---EEEccCCCC---CHHHHHHHHhh
Q 004491 646 KAGADIIVAHMGLTTSGSIGAKTALSLDESVDRVQAIADAAHRINPDAI---VLCHGGPIS---SPSEAEFILKR 714 (749)
Q Consensus 646 ~AGaDiiv~h~GlT~gG~~Ga~~~~sl~~~~~~~~~i~~aa~~~~pdii---~l~hGGPi~---~p~d~~~~l~~ 714 (749)
++|+|.+.+-...+.. ..=.+...|.+++++.+.++.+.|++..-.+. ..+.|.|.. +|+.+..+.+.
T Consensus 90 ~~g~~~v~i~~~~s~~-~~~~n~~~~~~e~l~~~~~~v~~ak~~g~~v~~~i~~~~~~~~~~~~~~~~~~~~~~~ 163 (287)
T PRK05692 90 AAGADEVAVFASASEA-FSQKNINCSIAESLERFEPVAEAAKQAGVRVRGYVSCVLGCPYEGEVPPEAVADVAER 163 (287)
T ss_pred HcCCCEEEEEEecCHH-HHHHHhCCCHHHHHHHHHHHHHHHHHcCCEEEEEEEEEecCCCCCCCCHHHHHHHHHH
Confidence 9999987665544322 22335567899999999999999999887763 333466655 67766666643
No 370
>TIGR02025 BchH magnesium chelatase, H subunit. This model represents the H subunit of the magnesium chelatase complex responsible for magnesium insertion into the protoporphyrin IX ring in the biosynthesis of both chlorophyll and bacteriochlorophyll. In chlorophyll-utilizing species, this gene is known as ChlH, while in bacteriochlorophyll-utilizing spoecies it is called BchH. Subunit H is the largest (~140kDa) of the three subunits (the others being BchD/ChlD and BchI/ChlI), and is known to bind protoporphyrin IX. Subunit H is homologous to the CobN subunit of cobaltochelatase and by anology with that enzyme, subunit H is believed to also bind the magnesium ion which is inserted into the ring. In conjunction with the hydrolysis of ATP by subunits I and D, a conformation change is believed to happen in subunit H causing the magnesium ion insertion into the distorted protoporphyrin ring.
Probab=69.43 E-value=21 Score=46.09 Aligned_cols=152 Identities=15% Similarity=0.257 Sum_probs=93.2
Q ss_pred CCcEEEEeccCCc-----hHHHHHHHHHHHhcCccEEEEecCCCch-HHHHHHHHcC-----CceEEEeCchhhhhhhhh
Q 004491 208 EKCTVGITMFGVT-----TPCVNAVKERLEKEGYETMVFHATGVGG-RAMEALVKEG-----FIQGVLDITTTEVADYVV 276 (749)
Q Consensus 208 ~kp~IgiTMFGvT-----Tp~V~~~r~~Le~~GyEvlVFHATG~GG-rAME~Li~eG-----~~~gVlDlTttElaD~l~ 276 (749)
++|+|||..+-.. ++.++++.+.||++|+.|+..-++|..+ .+++++.... .+|+|+.+|- . -|+
T Consensus 238 ~~p~Vgil~~r~~~~~~~~~~~dalI~~lE~~G~~vipvf~~gl~~~~~v~~~~~~~~~~~~~vdaiI~~~g--F--~l~ 313 (1216)
T TIGR02025 238 KAPRVGLLLLRKHLLTGNQAHYDNLIRELEAAGLQVVPAFSGGLDGRVAVEDFFMKDSTPSVKVDAVVSLTG--F--SLV 313 (1216)
T ss_pred CCCEEEEEEchhhhhcCCcHHHHHHHHHHHHCCCcEEEEEecCccccHHHHHHHHhcccCCCCccEEEECCc--h--hcc
Confidence 5899999766433 4678999999999999999888888755 7889887654 6899988873 2 256
Q ss_pred CCccCCCC-chhhhhhhcCCCeEEecCcc--c-------cccCCCCC-----CCCccccCC----ceeeecCcceEEecC
Q 004491 277 GGVMACDS-SRFDATIEKKIPLVLSVGAL--D-------MVNFGAKD-----TIPSKFQRR----KIHVHNQQVSLMRTT 337 (749)
Q Consensus 277 GGv~saGp-~RL~AA~~~GIPqVVspGal--D-------mVnFG~~d-----tvPe~f~~R----~~~~HNp~vTlmRTt 337 (749)
||-....+ ...+.--+.+||++...--. + -.-.+|.+ .+|| +.++ .+--....-..+..-
T Consensus 314 ggpa~~~~~~a~~~L~~lnVPvl~~~~l~~qt~~~W~~s~~Gl~p~~~~~~valPE-lDG~I~piv~~g~~~~~~~~~pi 392 (1216)
T TIGR02025 314 GGPAGSDAAAAVEILKGLDVPYIVAIPLLFQTIESWTASDLGLGPLQVALLVAIPE-LDGAIAPVILGGLVGGAGDAIPV 392 (1216)
T ss_pred CCCccccchhhHHHHHHCCCCEEEEEecCCCCHHHHHhCCCCCChHHhhheeechh-hCCeeeeEEEEEEecCCCceeeC
Confidence 65432222 22333457899988754211 0 00111111 2222 2222 111111111257788
Q ss_pred HHHHHHHHHHHHHHHc-----cCCCCeEEEee
Q 004491 338 VDENKKFAAFIANKLN-----QSSSKIRLCLP 364 (749)
Q Consensus 338 ~eE~~~ig~~iA~kLn-----~a~gpv~vllP 364 (749)
+|..+.+++.+..-++ .+.-++.|++-
T Consensus 393 ~eri~~la~r~~~w~~Lr~k~n~eKkvAIil~ 424 (1216)
T TIGR02025 393 QERLERLAGRVKRWVRLRKKPNAEKKVAIVLF 424 (1216)
T ss_pred HHHHHHHHHHHHHHHHHccCChhhCEEEEEec
Confidence 9999998888887554 34567777763
No 371
>cd06348 PBP1_ABC_ligand_binding_like_13 Type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); however its ligand specificity has not been determined experimentally.
Probab=69.20 E-value=1.3e+02 Score=31.97 Aligned_cols=70 Identities=13% Similarity=0.200 Sum_probs=45.6
Q ss_pred HHHHHHHHHHHhcC------ccEEEEecCCC---chHHHHHHHHcCCceEEEeCchhhhhhhhhCCccCCCCchhhhhhh
Q 004491 222 PCVNAVKERLEKEG------YETMVFHATGV---GGRAMEALVKEGFIQGVLDITTTEVADYVVGGVMACDSSRFDATIE 292 (749)
Q Consensus 222 p~V~~~r~~Le~~G------yEvlVFHATG~---GGrAME~Li~eG~~~gVlDlTttElaD~l~GGv~saGp~RL~AA~~ 292 (749)
.+++.+.+++.+.| .|++++-..+- +-+++++|+++.-+++|+--.++..+..+ ...+-+
T Consensus 21 ~g~~~a~~~iNa~ggi~G~~v~lv~~D~~~~p~~a~~~~~~li~~~~v~~iiG~~~s~~~~a~-----------~~~~~~ 89 (344)
T cd06348 21 AGLKLAEDRFNQAGGVNGRPIKLVIEDSGGDEAEAINAFQTLINKDRVLAIIGPTLSQQAFAA-----------DPIAER 89 (344)
T ss_pred HHHHHHHHHHhhcCCcCCcEEEEEEecCCCChHHHHHHHHHHhhhcCceEEECCCCcHHHHhh-----------hHHHHh
Confidence 56666677776543 66777776555 44577899988778888876655544321 223457
Q ss_pred cCCCeEEecCc
Q 004491 293 KKIPLVLSVGA 303 (749)
Q Consensus 293 ~GIPqVVspGa 303 (749)
.+||+| +|++
T Consensus 90 ~~ip~i-~~~~ 99 (344)
T cd06348 90 AGVPVV-GPSN 99 (344)
T ss_pred CCCCEE-eccC
Confidence 899976 4543
No 372
>PRK07094 biotin synthase; Provisional
Probab=69.10 E-value=1.7e+02 Score=31.57 Aligned_cols=166 Identities=12% Similarity=0.067 Sum_probs=94.4
Q ss_pred HHHHHhhhhhcCCCCCCceEEeeccCCCCCCHHHHHHHHHHcCccceecCCcccccc--hhhhhhhhhcCCchHHHHHHH
Q 004491 544 AVVLEMANEVLPVVKEVPVLAGVCGTDPFRRVDYFLKQLESIGFFGVQNFPTVGLFD--GNFRQNLEETGMGYGLEVEMI 621 (749)
Q Consensus 544 ~iv~e~~~eilp~v~~tPViaGv~atDP~~~~~~~l~~lk~~Gf~GV~NfPTvgliD--G~fR~~LEe~G~gy~~EVemi 621 (749)
+.+.++.+.|--. .++++-.-+ ...-++.++.||+.|+..|. +|+=. -+.++.+.. +..|+.=++.|
T Consensus 103 ~~l~~l~~~i~~~-~~l~i~~~~-----g~~~~e~l~~Lk~aG~~~v~----~glEs~~~~~~~~i~~-~~s~~~~~~~i 171 (323)
T PRK07094 103 EKIADIIKEIKKE-LDVAITLSL-----GERSYEEYKAWKEAGADRYL----LRHETADKELYAKLHP-GMSFENRIACL 171 (323)
T ss_pred HHHHHHHHHHHcc-CCceEEEec-----CCCCHHHHHHHHHcCCCEEE----eccccCCHHHHHHhCC-CCCHHHHHHHH
Confidence 4566666555433 234443322 22347889999999988776 44432 255666655 68899889999
Q ss_pred HHHHHcCCcccccc------cCHHHHHH----HHhccCcEEEeccCCCcccccccccccCHHHHHHHHHHHHHHHHHhCC
Q 004491 622 DKAHKMGLLTTPYA------FNEGEAVK----MAKAGADIIVAHMGLTTSGSIGAKTALSLDESVDRVQAIADAAHRINP 691 (749)
Q Consensus 622 ~~A~~~gl~T~~yv------f~~eqa~~----Ma~AGaDiiv~h~GlT~gG~~Ga~~~~sl~~~~~~~~~i~~aa~~~~p 691 (749)
+.+++.|+.+..++ -+.++... +.+-++|.+-.+.=.-..|+-=.+.. ....+..-+++..++-..|
T Consensus 172 ~~l~~~Gi~v~~~~iiGlpget~ed~~~~l~~l~~l~~~~v~~~~~~P~pgTpl~~~~---~~~~~~~~~~~a~~R~~lp 248 (323)
T PRK07094 172 KDLKELGYEVGSGFMVGLPGQTLEDLADDILFLKELDLDMIGIGPFIPHPDTPLKDEK---GGSLELTLKVLALLRLLLP 248 (323)
T ss_pred HHHHHcCCeecceEEEECCCCCHHHHHHHHHHHHhCCCCeeeeeccccCCCCCcccCC---CCCHHHHHHHHHHHHHhCc
Confidence 99999998654422 24444433 34677775443332222332211111 1246777888888999999
Q ss_pred CeEEEEccCC-CCCHHHHHHHHhhCCCccEEecCc
Q 004491 692 DAIVLCHGGP-ISSPSEAEFILKRTKGVHGFYGAS 725 (749)
Q Consensus 692 dii~l~hGGP-i~~p~d~~~~l~~~~~~~Gf~g~S 725 (749)
+.-+-+-++= --.|+-.+..|. .+++++++--
T Consensus 249 ~~~i~~~~~~~~~~~~~~~~~l~--~Gan~~~~~~ 281 (323)
T PRK07094 249 DANIPATTALGTLNPDGREKGLK--AGANVVMPNL 281 (323)
T ss_pred CCCCcccCCccccCchhHHHHHH--cCCceecCCC
Confidence 8644332321 112443344442 4567776543
No 373
>PRK08385 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=69.09 E-value=23 Score=38.60 Aligned_cols=192 Identities=23% Similarity=0.219 Sum_probs=102.4
Q ss_pred EeccccchhhhhhhhcCCcEEEEeccccccccCCccccccccccCchHHHH------H----------hhhhhcCCCC--
Q 004491 497 GAGAGTGISAKFEEAGGVDLIVLYNSGRFRMAGRGSLAGLLPFADANAVVL------E----------MANEVLPVVK-- 558 (749)
Q Consensus 497 g~gaGtGlsAk~ae~gGaDli~~ynsGrfR~~G~~SlagllpygdaN~iv~------e----------~~~eilp~v~-- 558 (749)
|+-+|.....+..+.-|..+......|.+=..|---+. -.|++..+.. . +.+++.-.++
T Consensus 41 gi~aG~~~a~~i~~~l~~~v~~~~~dG~~v~~g~~i~~---i~G~~~~ll~~Er~~ln~l~~~SGIAT~T~~~v~~~~~~ 117 (278)
T PRK08385 41 GVIAGLEEAKALFEHFGVKVEVRKRDGEEVKAGEVILE---LKGNARAILLVERTALNIIGRMSGIATETRKLVELVKAV 117 (278)
T ss_pred eEEeCHHHHHHHHHHcCCEEEEEcCCCCEecCCCEEEE---EEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 45567778888888777777776666664433322111 0123322220 0 1123332221
Q ss_pred CCc-eEEeeccCCCCCCHHHHHHHHHHcCccceecCCccc-----ccchhhhhhhhhcCCchHHHHHHHHHHHHcC--Cc
Q 004491 559 EVP-VLAGVCGTDPFRRVDYFLKQLESIGFFGVQNFPTVG-----LFDGNFRQNLEETGMGYGLEVEMIDKAHKMG--LL 630 (749)
Q Consensus 559 ~tP-ViaGv~atDP~~~~~~~l~~lk~~Gf~GV~NfPTvg-----liDG~fR~~LEe~G~gy~~EVemi~~A~~~g--l~ 630 (749)
+.+ .|++--=|-|... .|-++--..| |-.|.. .| ||-.+-+..+ |+..-|+.+| ++. ..
T Consensus 118 ~~~~~i~~TRKt~Pg~R--~l~k~Av~~G--Gg~~HR-~gLsd~vLikdnHi~~~-----~i~~av~~~r---~~~~~~k 184 (278)
T PRK08385 118 NPKVRVAGTRKTLPGLR--LLDKKAIIIG--GGEPHR-FSLSDAILIKDNHLALV-----PLEEAIRRAK---EFSVYKV 184 (278)
T ss_pred CCCEEEEEeCCCChhhh--HHHHHHHHhc--CCcccC-CCCcccEEEccCHHHHH-----HHHHHHHHHH---HhCCCCc
Confidence 233 4555555555533 2333333333 444442 23 3333333332 4665554444 432 11
Q ss_pred ccccccCHHHHHHHHhccCcEEEeccCCCcccccccccccCHHHHHHHHHHHHHHHHHh--CCCeEEEEccCCCCCHHHH
Q 004491 631 TTPYAFNEGEAVKMAKAGADIIVAHMGLTTSGSIGAKTALSLDESVDRVQAIADAAHRI--NPDAIVLCHGGPISSPSEA 708 (749)
Q Consensus 631 T~~yvf~~eqa~~Ma~AGaDiiv~h~GlT~gG~~Ga~~~~sl~~~~~~~~~i~~aa~~~--~pdii~l~hGGPi~~p~d~ 708 (749)
-.-=|-|.|||.+-+++|||+|-.- -.|.++..+ +.+..++. +|.+.+.+.|| -+++.+
T Consensus 185 IeVEv~~leea~~a~~agaDiI~LD-------------n~~~e~l~~----~v~~l~~~~~~~~~~leaSGG--I~~~ni 245 (278)
T PRK08385 185 VEVEVESLEDALKAAKAGADIIMLD-------------NMTPEEIRE----VIEALKREGLRERVKIEVSGG--ITPENI 245 (278)
T ss_pred EEEEeCCHHHHHHHHHcCcCEEEEC-------------CCCHHHHHH----HHHHHHhcCcCCCEEEEEECC--CCHHHH
Confidence 2223468999999999999998653 224444333 33333443 37888888888 499999
Q ss_pred HHHHhhCCCccEEecCc
Q 004491 709 EFILKRTKGVHGFYGAS 725 (749)
Q Consensus 709 ~~~l~~~~~~~Gf~g~S 725 (749)
+.+. . +++|.+.-++
T Consensus 246 ~~yA-~-tGvD~Is~ga 260 (278)
T PRK08385 246 EEYA-K-LDVDVISLGA 260 (278)
T ss_pred HHHH-H-cCCCEEEeCh
Confidence 9987 4 5778776655
No 374
>PF00682 HMGL-like: HMGL-like of this family is not conserved in other members. are a sub-families of this Pfam.; InterPro: IPR000891 Pyruvate carboxylase (6.4.1.1 from EC) (PC), a member of the biotin-dependent enzyme family, is involved in the gluconeogenesis by mediating the carboxylation of pyruvate to oxaloacetate. Biotin-dependent carboxylase enzymes perform a two step reaction. Enzyme-bound biotin is first carboxylated by bicarbonate and ATP and the carboxyl group temporarily bound to biotin is subsequently transferred to an acceptor substrate such as pyruvate []. PC has three functional domains: a biotin carboxylase (BC) domain, a carboxyltransferase (CT) domain which perform the second part of the reaction and a biotinyl domain [, ]. The mechanism by which the carboxyl group is transferred from the carboxybiotin to the pyruvate is not well understood. The pyruvate carboxyltransferase domain is also found in other pyruvate binding enzymes and acetyl-CoA dependent enzymes suggesting that this domain can be associated with different enzymatic activities. This domain is found towards the N-terminal region of various aldolase enzymes. This N-terminal TIM barrel domain [] interacts with the C-terminal domain. The C-terminal DmpG_comm domain (IPR012425 from INTERPRO) is thought to promote heterodimerisation with members of IPR003361 from INTERPRO to form a bifunctional aldolase-dehydrogenase []. ; GO: 0003824 catalytic activity; PDB: 3MP5_E 3MP3_E 2CW6_E 3MP4_D 3HBL_A 3HB9_C 3HO8_A 3BG5_C 1YDN_B 3RMJ_A ....
Probab=69.09 E-value=68 Score=32.96 Aligned_cols=65 Identities=18% Similarity=0.240 Sum_probs=36.7
Q ss_pred ceEEeeccCCCCCCHHHHHHHHHHcCccceecCCcccccchhhhhhhhhcCCchH----HHHHHHHHHHHcCCcc
Q 004491 561 PVLAGVCGTDPFRRVDYFLKQLESIGFFGVQNFPTVGLFDGNFRQNLEETGMGYG----LEVEMIDKAHKMGLLT 631 (749)
Q Consensus 561 PViaGv~atDP~~~~~~~l~~lk~~Gf~GV~NfPTvgliDG~fR~~LEe~G~gy~----~EVemi~~A~~~gl~T 631 (749)
.-+.+++-. ...+++..++.+++.|...|.-|=.+. |-..+.++ ++..+ +=.++++.|+++|+-.
T Consensus 56 ~~~~~~~~~-~~~~i~~~~~~~~~~g~~~i~i~~~~s--~~~~~~~~---~~~~~~~~~~~~~~v~~ak~~g~~v 124 (237)
T PF00682_consen 56 ARLQALCRA-NEEDIERAVEAAKEAGIDIIRIFISVS--DLHIRKNL---NKSREEALERIEEAVKYAKELGYEV 124 (237)
T ss_dssp SEEEEEEES-CHHHHHHHHHHHHHTTSSEEEEEEETS--HHHHHHHT---CSHHHHHHHHHHHHHHHHHHTTSEE
T ss_pred cccceeeee-hHHHHHHHHHhhHhccCCEEEecCccc--HHHHHHhh---cCCHHHHHHHHHHHHHHHHhcCCce
Confidence 334455543 234577778888999999888773333 33333333 22222 2235667777777543
No 375
>PRK12346 transaldolase A; Provisional
Probab=68.91 E-value=21 Score=39.68 Aligned_cols=90 Identities=19% Similarity=0.207 Sum_probs=64.8
Q ss_pred HHHHHHHHHcCCccc-ccccCHHHHHHHHhccCcEEEeccCCCccc---cccc-ccccCHHHHHHHHHHHHHHHHHhCCC
Q 004491 618 VEMIDKAHKMGLLTT-PYAFNEGEAVKMAKAGADIIVAHMGLTTSG---SIGA-KTALSLDESVDRVQAIADAAHRINPD 692 (749)
Q Consensus 618 Vemi~~A~~~gl~T~-~yvf~~eqa~~Ma~AGaDiiv~h~GlT~gG---~~Ga-~~~~sl~~~~~~~~~i~~aa~~~~pd 692 (749)
++.++.-.+.|+-+. -.+|+.+||..-++|||+.|-+.+|.-.-= ..+. .....-++.+..+++|++.-++.+.+
T Consensus 139 i~A~~~L~~~GI~~n~TliFS~~Qa~~aa~AGa~~ISPfVgRi~d~~~~~~~~~~~~~~~~~Gv~~v~~i~~~~k~~~~~ 218 (316)
T PRK12346 139 IRAAEELEKEGINCNLTLLFSFAQARACAEAGVFLISPFVGRIYDWYQARKPMDPYVVEEDPGVKSVRNIYDYYKQHRYE 218 (316)
T ss_pred HHHHHHHHHCCCceeEEEecCHHHHHHHHHcCCCEEEecccHHHHhhhhccccccccccCCChHHHHHHHHHHHHHcCCC
Confidence 566667777787654 369999999999999999999999954220 0000 01122356778888888888998888
Q ss_pred eEEEEccCCCCCHHHHH
Q 004491 693 AIVLCHGGPISSPSEAE 709 (749)
Q Consensus 693 ii~l~hGGPi~~p~d~~ 709 (749)
..|| |.-+.+++++.
T Consensus 219 T~Vm--~ASfRn~~qi~ 233 (316)
T PRK12346 219 TIVM--GASFRRTEQIL 233 (316)
T ss_pred cEEE--ecccCCHHHHH
Confidence 8888 56677777665
No 376
>PRK13111 trpA tryptophan synthase subunit alpha; Provisional
Probab=68.89 E-value=41 Score=36.07 Aligned_cols=92 Identities=20% Similarity=0.326 Sum_probs=66.8
Q ss_pred hcCCchHHHHHHHHHHHHcC----Ccccccc-----cCHHH-HHHHHhccCcEEEeccCCCcccccccccccCHHHHHHH
Q 004491 609 ETGMGYGLEVEMIDKAHKMG----LLTTPYA-----FNEGE-AVKMAKAGADIIVAHMGLTTSGSIGAKTALSLDESVDR 678 (749)
Q Consensus 609 e~G~gy~~EVemi~~A~~~g----l~T~~yv-----f~~eq-a~~Ma~AGaDiiv~h~GlT~gG~~Ga~~~~sl~~~~~~ 678 (749)
+.|+..+.=.+++++-|++. ++-+.|. |..|. .++..++|+|-+++. .+++| .
T Consensus 68 ~~G~~~~~~~~~~~~~r~~~~~~p~vlm~Y~N~i~~~G~e~f~~~~~~aGvdGviip-------------DLp~e----e 130 (258)
T PRK13111 68 AAGVTLADVFELVREIREKDPTIPIVLMTYYNPIFQYGVERFAADAAEAGVDGLIIP-------------DLPPE----E 130 (258)
T ss_pred HcCCCHHHHHHHHHHHHhcCCCCCEEEEecccHHhhcCHHHHHHHHHHcCCcEEEEC-------------CCCHH----H
Confidence 46888989999999988553 2333333 34443 555679999988884 34554 5
Q ss_pred HHHHHHHHHHhCCCeEEEEccCCCCCHHHHHHHHhhCCCccEEe
Q 004491 679 VQAIADAAHRINPDAIVLCHGGPISSPSEAEFILKRTKGVHGFY 722 (749)
Q Consensus 679 ~~~i~~aa~~~~pdii~l~hGGPi~~p~d~~~~l~~~~~~~Gf~ 722 (749)
++++.++|++.+-+.|.||- |-++++.++.+.+.. .||+
T Consensus 131 ~~~~~~~~~~~gl~~I~lva--p~t~~eri~~i~~~s---~gfI 169 (258)
T PRK13111 131 AEELRAAAKKHGLDLIFLVA--PTTTDERLKKIASHA---SGFV 169 (258)
T ss_pred HHHHHHHHHHcCCcEEEEeC--CCCCHHHHHHHHHhC---CCcE
Confidence 57888889999999999986 777788899888763 4665
No 377
>cd07948 DRE_TIM_HCS Saccharomyces cerevisiae homocitrate synthase and related proteins, catalytic TIM barrel domain. Homocitrate synthase (HCS) catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate, the first step in the lysine biosynthesis pathway. This family includes the Yarrowia lipolytica LYS1 protein as well as the Saccharomyces cerevisiae LYS20 and LYS21 proteins. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. Th
Probab=68.85 E-value=57 Score=34.95 Aligned_cols=124 Identities=12% Similarity=0.063 Sum_probs=68.8
Q ss_pred CCHHHHHHHHHHcCccceec-CCcccccchhhhhhhhhcCCchHHHHHHHHHHHHcCCccc---ccccCHHHHHHHHhcc
Q 004491 573 RRVDYFLKQLESIGFFGVQN-FPTVGLFDGNFRQNLEETGMGYGLEVEMIDKAHKMGLLTT---PYAFNEGEAVKMAKAG 648 (749)
Q Consensus 573 ~~~~~~l~~lk~~Gf~GV~N-fPTvgliDG~fR~~LEe~G~gy~~EVemi~~A~~~gl~T~---~yvf~~eqa~~Ma~AG 648 (749)
-..-.+++.|-+.|+.=|.= +|.++ -+ +-+.++...+++.-+. .-+.+.++.+...++|
T Consensus 22 ~~k~~i~~~L~~~Gv~~IEvG~P~~~---~~--------------~~~~~~~l~~~~~~~~v~~~~r~~~~di~~a~~~g 84 (262)
T cd07948 22 EDKIEIAKALDAFGVDYIELTSPAAS---PQ--------------SRADCEAIAKLGLKAKILTHIRCHMDDARIAVETG 84 (262)
T ss_pred HHHHHHHHHHHHcCCCEEEEECCCCC---HH--------------HHHHHHHHHhCCCCCcEEEEecCCHHHHHHHHHcC
Confidence 34567889999999876643 46442 12 2222233333332222 2355899999999999
Q ss_pred CcEEEeccCCCcccccccccccCHHHHHHHHHHHHHHHHHhCCCeEEEEccCCCCCHHHHHHHHhh
Q 004491 649 ADIIVAHMGLTTSGSIGAKTALSLDESVDRVQAIADAAHRINPDAIVLCHGGPISSPSEAEFILKR 714 (749)
Q Consensus 649 aDiiv~h~GlT~gG~~Ga~~~~sl~~~~~~~~~i~~aa~~~~pdii~l~hGGPi~~p~d~~~~l~~ 714 (749)
+|.|.+-+...- ...=.+...|.+++++.+.++.+.|++..-.+-+-+--.==..|+++..+++.
T Consensus 85 ~~~i~i~~~~S~-~~~~~~~~~~~~e~~~~~~~~i~~a~~~G~~v~~~~eda~r~~~~~l~~~~~~ 149 (262)
T cd07948 85 VDGVDLVFGTSP-FLREASHGKSITEIIESAVEVIEFVKSKGIEVRFSSEDSFRSDLVDLLRVYRA 149 (262)
T ss_pred cCEEEEEEecCH-HHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEEEeeCCCCHHHHHHHHHH
Confidence 998766554321 11112334677888888877777777765433222110111235666555543
No 378
>cd00377 ICL_PEPM Members of the ICL/PEPM enzyme family catalyze either P-C or C-C bond formation/cleavage. Known members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), and 2-methylisocitrate lyase (MICL). Isocitrate lyase (ICL) catalyzes the conversion of isocitrate to succinate and glyoxylate, the first committed step in the glyoxylate pathway. This carbon-conserving pathway is present in most prokaryotes, lower eukaryotes and plants, but has not been observed in vertebrates. PEP mutase (PEPM) turns phosphoenolpyruvate (PEP) into phosphonopyruvate (P-pyr), an important intermediate in the formation of organophosphonates, which function as antibiotics or play a role in pathogenesis or signaling. P-pyr can be hydrolyzed by phosphonopyruvate hydrolase (PPH) to from pyruvate and phosphate. Oxaloacetate acetylhydrolase (OAH) catalyzes the hydrolytic cleavage of oxaloacetate to
Probab=68.80 E-value=27 Score=36.89 Aligned_cols=57 Identities=26% Similarity=0.471 Sum_probs=44.2
Q ss_pred HHHHHhccCcEEEec--cCCCcccccccccccCHHHHHHHHHHHHHHHHHhCCCeEEEEc
Q 004491 641 AVKMAKAGADIIVAH--MGLTTSGSIGAKTALSLDESVDRVQAIADAAHRINPDAIVLCH 698 (749)
Q Consensus 641 a~~Ma~AGaDiiv~h--~GlT~gG~~Ga~~~~sl~~~~~~~~~i~~aa~~~~pdii~l~h 698 (749)
++++.++|++.|++- .+-...|..|-+..+|.++.+++++.+.+++... +|+++++-
T Consensus 90 v~~~~~~G~~gv~iED~~~~k~~g~~~~~~~~~~ee~~~ki~aa~~a~~~~-~~~~IiAR 148 (243)
T cd00377 90 VRELEEAGAAGIHIEDQVGPKKCGHHGGKVLVPIEEFVAKIKAARDARDDL-PDFVIIAR 148 (243)
T ss_pred HHHHHHcCCEEEEEecCCCCccccCCCCCeecCHHHHHHHHHHHHHHHhcc-CCeEEEEE
Confidence 456778999999982 1112233446677899999999999999999998 89988876
No 379
>PRK11197 lldD L-lactate dehydrogenase; Provisional
Probab=68.24 E-value=11 Score=42.74 Aligned_cols=91 Identities=23% Similarity=0.290 Sum_probs=56.1
Q ss_pred CCchHHHHHHHHHHHHcCCcccccccCHHHHHHHHhccCcEEEeccCCCcccccccccccCHHHHHHHHHHHHHHHHHhC
Q 004491 611 GMGYGLEVEMIDKAHKMGLLTTPYAFNEGEAVKMAKAGADIIVAHMGLTTSGSIGAKTALSLDESVDRVQAIADAAHRIN 690 (749)
Q Consensus 611 G~gy~~EVemi~~A~~~gl~T~~yvf~~eqa~~Ma~AGaDiiv~h~GlT~gG~~Ga~~~~sl~~~~~~~~~i~~aa~~~~ 690 (749)
.+.+ ..++-|+..- .+-+-+-=|.+.++|+...++|||.|++- ..||.-. ....+ +++.+.+|.+ .++
T Consensus 231 ~ltW-~di~~lr~~~-~~pvivKgV~s~~dA~~a~~~Gvd~I~Vs---~hGGr~~-d~~~~---t~~~L~~i~~---a~~ 298 (381)
T PRK11197 231 SISW-KDLEWIRDFW-DGPMVIKGILDPEDARDAVRFGADGIVVS---NHGGRQL-DGVLS---SARALPAIAD---AVK 298 (381)
T ss_pred CCCH-HHHHHHHHhC-CCCEEEEecCCHHHHHHHHhCCCCEEEEC---CCCCCCC-CCccc---HHHHHHHHHH---Hhc
Confidence 4555 3467666643 34455555689999999999999988642 1234321 11122 2233344433 345
Q ss_pred CCeEEEEccCCCCCHHHHHHHHhh
Q 004491 691 PDAIVLCHGGPISSPSEAEFILKR 714 (749)
Q Consensus 691 pdii~l~hGGPi~~p~d~~~~l~~ 714 (749)
+++-|+.-|| |.+..|+-..|.-
T Consensus 299 ~~~~vi~dGG-Ir~g~Di~KALaL 321 (381)
T PRK11197 299 GDITILADSG-IRNGLDVVRMIAL 321 (381)
T ss_pred CCCeEEeeCC-cCcHHHHHHHHHc
Confidence 6677777776 9999999988844
No 380
>cd06282 PBP1_GntR_like_2 Ligand-binding domain of putative DNA transcription repressors highly similar to that of the repressor specific for gluconate (GntR) which is a member of the LacI-GalR family of bacterial transcription regulators. This group includes the ligand-binding domain of putative DNA transcription repressors highly similar to that of the repressor specific for gluconate (GntR) which is a member of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding
Probab=68.23 E-value=1.3e+02 Score=29.95 Aligned_cols=66 Identities=23% Similarity=0.408 Sum_probs=41.6
Q ss_pred HHHHHHHHHHhcCccEEEEecCCCch---HHHHHHHHcCCceEEEeCchhhhhhhhhCCccCCCCchhhhhhhcCCCeEE
Q 004491 223 CVNAVKERLEKEGYETMVFHATGVGG---RAMEALVKEGFIQGVLDITTTEVADYVVGGVMACDSSRFDATIEKKIPLVL 299 (749)
Q Consensus 223 ~V~~~r~~Le~~GyEvlVFHATG~GG---rAME~Li~eG~~~gVlDlTttElaD~l~GGv~saGp~RL~AA~~~GIPqVV 299 (749)
....+.+.++++||.+.++-...-.. +++++|++ ..+||++=.. ......+-++.+.+.|||.|+
T Consensus 17 ~~~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~-~~vdgiii~~-----------~~~~~~~~~~~~~~~~ipvV~ 84 (266)
T cd06282 17 CVQGIQEEARAAGYSLLLATTDYDAEREADAVETLLR-QRVDGLILTV-----------ADAATSPALDLLDAERVPYVL 84 (266)
T ss_pred HHHHHHHHHHHCCCEEEEeeCCCCHHHHHHHHHHHHh-cCCCEEEEec-----------CCCCchHHHHHHhhCCCCEEE
Confidence 34566677778899999986543222 45667766 4678887111 111112346777789999877
Q ss_pred e
Q 004491 300 S 300 (749)
Q Consensus 300 s 300 (749)
.
T Consensus 85 ~ 85 (266)
T cd06282 85 A 85 (266)
T ss_pred E
Confidence 6
No 381
>cd06305 PBP1_methylthioribose_binding_like Methylthioribose-binding protein-like of ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily. Methylthioribose-binding protein-like of ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily, which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding. The sugar-binding domain of the periplasmic proteins in this group is also homologous to the ligand-binding domain of eukaryotic receptors such as metabotropic glutamate receptor (mGluR), DNA-binding transcriptional repressors such as LacI and GalR.
Probab=68.15 E-value=1.4e+02 Score=30.11 Aligned_cols=67 Identities=12% Similarity=0.201 Sum_probs=43.0
Q ss_pred HHHHHHHHHHHhcCccEEEEecCCCc----hHHHHHHHHcCCceEEEeCchhhhhhhhhCCccCCCCchhhhhhhcCCCe
Q 004491 222 PCVNAVKERLEKEGYETMVFHATGVG----GRAMEALVKEGFIQGVLDITTTEVADYVVGGVMACDSSRFDATIEKKIPL 297 (749)
Q Consensus 222 p~V~~~r~~Le~~GyEvlVFHATG~G----GrAME~Li~eG~~~gVlDlTttElaD~l~GGv~saGp~RL~AA~~~GIPq 297 (749)
.....+.+.+++.||++.++= +... -..++.|+.. .+||++=..... ...++.+..+.++|||.
T Consensus 16 ~~~~gi~~~~~~~g~~~~~~~-~~~~~~~~~~~l~~~~~~-~vdgii~~~~~~----------~~~~~~i~~~~~~~ipv 83 (273)
T cd06305 16 AYLAGTKAEAEALGGDLRVYD-AGGDDAKQADQIDQAIAQ-KVDAIIIQHGRA----------EVLKPWVKRALDAGIPV 83 (273)
T ss_pred HHHHHHHHHHHHcCCEEEEEC-CCCCHHHHHHHHHHHHHc-CCCEEEEecCCh----------hhhHHHHHHHHHcCCCE
Confidence 456677788888999988863 3322 1455667766 479987543211 11234467778899997
Q ss_pred EEe
Q 004491 298 VLS 300 (749)
Q Consensus 298 VVs 300 (749)
|..
T Consensus 84 V~~ 86 (273)
T cd06305 84 VAF 86 (273)
T ss_pred EEe
Confidence 765
No 382
>cd06297 PBP1_LacI_like_12 Ligand-binding domain of uncharacterized transcription regulators from Thermus thermophilus and close homologs. Ligand-binding domain of uncharacterized transcription regulators from Thermus thermophilus and close homologs from other bacteria. This group belongs to the the LacI-GalR family repressors that are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding.
Probab=67.97 E-value=26 Score=35.75 Aligned_cols=77 Identities=16% Similarity=0.225 Sum_probs=49.2
Q ss_pred EEEeccCCchHHH----HHHHHHHHhcCccEEEEecCCCch--HHHHHHHHcCCceEEEeCchhhhhhhhhCCccCCCCc
Q 004491 212 VGITMFGVTTPCV----NAVKERLEKEGYETMVFHATGVGG--RAMEALVKEGFIQGVLDITTTEVADYVVGGVMACDSS 285 (749)
Q Consensus 212 IgiTMFGvTTp~V----~~~r~~Le~~GyEvlVFHATG~GG--rAME~Li~eG~~~gVlDlTttElaD~l~GGv~saGp~ 285 (749)
||+..-..+.|.. ..+.+.++++||+++++......- .+.+++..++.+|||+=..+.. .++
T Consensus 2 Igvi~p~~~~~~~~~~~~~i~~~~~~~gy~~~~~~~~~~~~~~~~~~~~l~~~~vdgvi~~~~~~------------~~~ 69 (269)
T cd06297 2 ISVLLPVVATEFYRRLLEGIEGALLEQRYDLALFPLLSLARLKRYLESTTLAYLTDGLLLASYDL------------TER 69 (269)
T ss_pred EEEEeCCCcChhHHHHHHHHHHHHHHCCCEEEEEeCCCcHHHHHHHHHHHHhcCCCEEEEecCcc------------ChH
Confidence 4444444455554 466666777899999987654321 3444445678899998654321 234
Q ss_pred hhhhhhhcCCCeEEe
Q 004491 286 RFDATIEKKIPLVLS 300 (749)
Q Consensus 286 RL~AA~~~GIPqVVs 300 (749)
.++.+.+.|||.|+.
T Consensus 70 ~~~~l~~~~iPvv~~ 84 (269)
T cd06297 70 LAERRLPTERPVVLV 84 (269)
T ss_pred HHHHHhhcCCCEEEE
Confidence 567777889998876
No 383
>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.
Probab=67.94 E-value=45 Score=38.89 Aligned_cols=89 Identities=16% Similarity=0.238 Sum_probs=61.9
Q ss_pred HHHHHHHHhccCcEEEeccCCCcccccccccccCHHHHHHHHHHHHHHHHHhCCCeEEEEccCCCCCHHHHHHHHhhCCC
Q 004491 638 EGEAVKMAKAGADIIVAHMGLTTSGSIGAKTALSLDESVDRVQAIADAAHRINPDAIVLCHGGPISSPSEAEFILKRTKG 717 (749)
Q Consensus 638 ~eqa~~Ma~AGaDiiv~h~GlT~gG~~Ga~~~~sl~~~~~~~~~i~~aa~~~~pdii~l~hGGPi~~p~d~~~~l~~~~~ 717 (749)
.+-++++.++|+|+||+-.- . |. + +.+.++.+..++..||+.|++ |.+.|+++++++.+. +
T Consensus 227 ~~ra~~Lv~aGVd~i~~D~a--~-g~-------~-----~~~~~~i~~i~~~~~~~~vi~--g~~~t~~~~~~l~~~--G 287 (475)
T TIGR01303 227 GGKAKALLDAGVDVLVIDTA--H-GH-------Q-----VKMISAIKAVRALDLGVPIVA--GNVVSAEGVRDLLEA--G 287 (475)
T ss_pred HHHHHHHHHhCCCEEEEeCC--C-CC-------c-----HHHHHHHHHHHHHCCCCeEEE--eccCCHHHHHHHHHh--C
Confidence 57889999999999997532 1 11 1 333444555566678888887 899999999999954 6
Q ss_pred ccEEe----cCcccc-------cchHHHHHHHHHHhhcc
Q 004491 718 VHGFY----GASSME-------RLPVEQAITSTMRQYKS 745 (749)
Q Consensus 718 ~~Gf~----g~Ss~E-------RlP~E~ai~~~~~~FK~ 745 (749)
+++.- +||..- ..|.-.++.+..+..+.
T Consensus 288 ~d~i~vg~g~Gs~~ttr~~~~~g~~~~~a~~~~~~~~~~ 326 (475)
T TIGR01303 288 ANIIKVGVGPGAMCTTRMMTGVGRPQFSAVLECAAEARK 326 (475)
T ss_pred CCEEEECCcCCccccCccccCCCCchHHHHHHHHHHHHH
Confidence 67764 333321 45888888888765554
No 384
>TIGR00110 ilvD dihydroxy-acid dehydratase. This model generates scores of up to 150 bits vs. 6-phosphogluconate dehydratase, a homologous enzyme.
Probab=67.89 E-value=12 Score=44.30 Aligned_cols=279 Identities=18% Similarity=0.272 Sum_probs=165.8
Q ss_pred CCCcEEEE-eccCCchHHHHH-------HHHHHHhcCccEEEEecCCC------ch--H------------HHHHHHHcC
Q 004491 207 KEKCTVGI-TMFGVTTPCVNA-------VKERLEKEGYETMVFHATGV------GG--R------------AMEALVKEG 258 (749)
Q Consensus 207 ~~kp~Igi-TMFGvTTp~V~~-------~r~~Le~~GyEvlVFHATG~------GG--r------------AME~Li~eG 258 (749)
-+||.||| ++|.--+||=.+ +|+-..+.|--.+.|+..++ |- + +.|-.++.-
T Consensus 9 ~~kP~IgI~ns~~e~~pch~hl~~l~~~vk~gv~~aGg~p~ef~ti~v~Dgi~~g~~GM~ySL~SRelIAdsiE~~~~~~ 88 (535)
T TIGR00110 9 FGKPFIGVANSYTTIVPGHMHLRDLAQAVKEGIEAAGGVAFEFNTIAVCDGIAMGHEGMKYSLPSREIIADSVETMVNAH 88 (535)
T ss_pred hCCCEEEEEeccccCcCchhhHHHHHHHHHHHHHHcCCeeEEecCCcCccccccCCcccchhhhhHHHHHHHHHHHHhcC
Confidence 36999997 578888898655 44555567889999998876 22 2 237778888
Q ss_pred CceEEEeCchhhhhhhhhCCccCCCCchhhhhhhcCCCeEEecCccccccCCCCCCCCcccc-CCceee-----ecCcce
Q 004491 259 FIQGVLDITTTEVADYVVGGVMACDSSRFDATIEKKIPLVLSVGALDMVNFGAKDTIPSKFQ-RRKIHV-----HNQQVS 332 (749)
Q Consensus 259 ~~~gVlDlTttElaD~l~GGv~saGp~RL~AA~~~GIPqVVspGalDmVnFG~~dtvPe~f~-~R~~~~-----HNp~vT 332 (749)
.|||++=|.- ||-. -|.=|-||+|.+||.|+++|+-= .|-.|+ +|++-. ---+..
T Consensus 89 ~~Dg~v~l~~---CDK~-------~PG~lMaaarlniP~i~v~gGpm---------~~G~~~~g~~~~~~~~~e~~g~~~ 149 (535)
T TIGR00110 89 RFDGLVCIPS---CDKI-------TPGMLMAAARLNIPSIFVTGGPM---------LPGHTKLGKKIDLVSAFEAVGEYA 149 (535)
T ss_pred CcceEEEecc---CCCC-------cHHHHHHHHhcCCCEEEEeCCCc---------cCCCCCCCCccchhhHHHHHHHHH
Confidence 8999986643 3333 46679999999999999999642 244455 543211 000122
Q ss_pred EEecCHHHHHHHHHHHHHHHccCCCCeEEEeeCCCCcccCCCCCCCCChhhhHHHHHHHHHhcccCCCceEEecCC-CCC
Q 004491 333 LMRTTVDENKKFAAFIANKLNQSSSKIRLCLPQNGISALDAPGKPFYDPEATGTLISELRTLIQTNEDRQVKVYPH-NIN 411 (749)
Q Consensus 333 lmRTt~eE~~~ig~~iA~kLn~a~gpv~vllP~~G~S~lD~~G~pf~DPeAd~al~~~L~~~l~~~~~~~v~~~d~-hIN 411 (749)
.=+.+.||..++-+ +.+++ -|-. .-+|=...-+.+.++|==.|+++..+ |+ +-.
T Consensus 150 ~G~i~~eel~~~e~------~a~ps--------~GsC------~gmgTANTM~~l~EaLGl~LPGsa~i-----pA~~~~ 204 (535)
T TIGR00110 150 AGKISEEELEEIER------SACPG--------CGSC------SGMFTANTMACLTEALGLSLPGCSTM-----LATSAE 204 (535)
T ss_pred cCCCCHHHHHHHHH------hcCCC--------CCCc------ccEEHHHHHHHHHHHHhcCCCCCcCC-----CCCCHH
Confidence 22345555543321 12221 1111 23455666778888888888765422 11 122
Q ss_pred CHHHHHHHHHHHHHHHhccccccCCccccccccccccccccccCCCcccccCCCCCCCCCCcccccHHHHHHHHHHHhhc
Q 004491 412 DSEFADALVDSFLEISGKNLMAFSSAHHVSCERHEDSVSNIYSSSHGTICYSPSNFPDARPETLQRTQAILSKLKYQIDK 491 (749)
Q Consensus 412 Dp~FA~a~a~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~il~~L~~~i~~ 491 (749)
-.+.++...+++++|+++ |-||-.++||+.|...++--.+-
T Consensus 205 r~~~a~~ag~~iv~l~~~---------------------------------------~i~p~dIlT~~a~~NAi~v~~A~ 245 (535)
T TIGR00110 205 KKRIAKNSGKRIVELVKK---------------------------------------NIKPRDILTKEAFENAITVDMAL 245 (535)
T ss_pred HHHHHHHHHHHHHHHHHc---------------------------------------CCCHHHhCCHHHHHHHHHHhccc
Confidence 234556666666666643 23466778888888777655433
Q ss_pred CCCeEEeccccch---hhhhhhhcCCcEEEEeccccccccCCccccccccccCchHHHHHhhhhhcCCCCCCceEEeecc
Q 004491 492 GLPIIGAGAGTGI---SAKFEEAGGVDLIVLYNSGRFRMAGRGSLAGLLPFADANAVVLEMANEVLPVVKEVPVLAGVCG 568 (749)
Q Consensus 492 ~~piig~gaGtGl---sAk~ae~gGaDli~~ynsGrfR~~G~~SlagllpygdaN~iv~e~~~eilp~v~~tPViaGv~a 568 (749)
|. .|=. .--.|.++|+||=+ .| ..+| -++||+|+-+-.
T Consensus 246 GG-------STNavlHL~AiA~eaGi~l~l---------------------dd--------fd~i---s~~vP~l~~l~P 286 (535)
T TIGR00110 246 GG-------STNTVLHLLAIANEAGVDLSL---------------------DD--------FDRL---SRKVPHIASLAP 286 (535)
T ss_pred Cc-------cccHHHHHHHHHHhcCCCCCH---------------------HH--------HHHH---hccCCcceeecC
Confidence 21 0100 11245667777422 11 1222 235899999998
Q ss_pred CCCCC--------CHHHHHHHHHHcCccceecCCcccccchhhhhhhhhc
Q 004491 569 TDPFR--------RVDYFLKQLESIGFFGVQNFPTVGLFDGNFRQNLEET 610 (749)
Q Consensus 569 tDP~~--------~~~~~l~~lk~~Gf~GV~NfPTvgliDG~fR~~LEe~ 610 (749)
.-+|. -+...+++|.+.|+= =.+-+||.. ..++++|++.
T Consensus 287 ~G~~~~~d~~~aGGvpav~k~L~~~glL-~~d~~TVtG--~tl~e~l~~~ 333 (535)
T TIGR00110 287 SGKYVMEDLHRAGGIPAVLKELDREGLL-HGDTLTVTG--KTLGEILEQA 333 (535)
T ss_pred CChhhHHHHHHcCCHHHHHHHHHHCCCc-CCCCCCcCC--cCHHHHHhcc
Confidence 88873 245668899998661 124466654 4688888875
No 385
>TIGR00677 fadh2_euk methylenetetrahydrofolate reductase, eukaryotic type. This protein is an FAD-containing flavoprotein.
Probab=67.86 E-value=75 Score=34.48 Aligned_cols=164 Identities=21% Similarity=0.195 Sum_probs=94.2
Q ss_pred hcCCcEEEE-ecc-ccccccCCccccccccccCchHHHHHhhhhhcCCCCCCceEEeeccCCCC-CCHHHHHHHHHHcCc
Q 004491 511 AGGVDLIVL-YNS-GRFRMAGRGSLAGLLPFADANAVVLEMANEVLPVVKEVPVLAGVCGTDPF-RRVDYFLKQLESIGF 587 (749)
Q Consensus 511 ~gGaDli~~-yns-GrfR~~G~~SlagllpygdaN~iv~e~~~eilp~v~~tPViaGv~atDP~-~~~~~~l~~lk~~Gf 587 (749)
+.+.|||-+ |+. |..|. -.+++++.|.-.. .+|++.=+.+.|=. ..+..+|.++++.|
T Consensus 27 ~~~p~fvsvT~~~~~~~~~-----------------~t~~~~~~l~~~~-g~~~i~Hltcr~~~~~~l~~~L~~~~~~G- 87 (281)
T TIGR00677 27 ASGPLFIDITWGAGGTTAE-----------------LTLTIASRAQNVV-GVETCMHLTCTNMPIEMIDDALERAYSNG- 87 (281)
T ss_pred hCCCCEEEeccCCCCcchh-----------------hHHHHHHHHHHhc-CCCeeEEeccCCCCHHHHHHHHHHHHHCC-
Confidence 467788855 666 32221 2555565544332 35666666666643 34555666666655
Q ss_pred cceecC------CcccccchhhhhhhhhcCCchHHHHHHHHHHHHc-CC-cccccccCH----------HHHHHH---Hh
Q 004491 588 FGVQNF------PTVGLFDGNFRQNLEETGMGYGLEVEMIDKAHKM-GL-LTTPYAFNE----------GEAVKM---AK 646 (749)
Q Consensus 588 ~GV~Nf------PTvgliDG~fR~~LEe~G~gy~~EVemi~~A~~~-gl-~T~~yvf~~----------eqa~~M---a~ 646 (749)
|.|+ |..+ |.. .++.--.|+.=+++|+..+++ +- |.++-+.++ .|...| .+
T Consensus 88 --i~niLal~GD~p~~---~~~---~~~~~~~f~~a~~Li~~i~~~~~~~f~igva~~Pe~Hp~~~~~~~d~~~L~~Ki~ 159 (281)
T TIGR00677 88 --IQNILALRGDPPHI---GDD---WTEVEGGFQYAVDLVKYIRSKYGDYFCIGVAGYPEGHPEAESVELDLKYLKEKVD 159 (281)
T ss_pred --CCEEEEECCCCCCC---CCC---CCCCCCCCcCHHHHHHHHHHhCCCceEEEEEECCCCCCCCCCHHHHHHHHHHHHH
Confidence 5555 3211 111 121212455557888888774 33 667666654 234444 37
Q ss_pred ccCcEEEeccCCCcccccccccccCHHHHHHHHHHHHHHHHHhCCCeEEEEccCCCCCHHHHHHHHhhCCCc
Q 004491 647 AGADIIVAHMGLTTSGSIGAKTALSLDESVDRVQAIADAAHRINPDAIVLCHGGPISSPSEAEFILKRTKGV 718 (749)
Q Consensus 647 AGaDiiv~h~GlT~gG~~Ga~~~~sl~~~~~~~~~i~~aa~~~~pdii~l~hGGPi~~p~d~~~~l~~~~~~ 718 (749)
||||-++..+-.. .+...++.+.+++..-++-++.-=-|+.+...++++. +.+++
T Consensus 160 aGA~f~iTQ~~Fd----------------~~~~~~f~~~~~~~gi~~PIi~GI~pi~s~~~~~~~~-~~~Gi 214 (281)
T TIGR00677 160 AGADFIITQLFYD----------------VDNFLKFVNDCRAIGIDCPIVPGIMPINNYASFLRRA-KWSKT 214 (281)
T ss_pred cCCCEeeccceec----------------HHHHHHHHHHHHHcCCCCCEEeeccccCCHHHHHHHH-hcCCC
Confidence 9999999887754 2344566666776554555554445999999888884 55654
No 386
>cd02808 GltS_FMN Glutamate synthase (GltS) FMN-binding domain. GltS is a complex iron-sulfur flavoprotein that catalyzes the reductive synthesis of L-glutamate from 2-oxoglutarate and L-glutamine via intramolecular channelling of ammonia, a reaction in the plant, yeast and bacterial pathway for ammonia assimilation. It is a multifunctional enzyme that functions through three distinct active centers, carrying out L-glutamine hydrolysis, conversion of 2-oxoglutarate into L-glutamate, and electron uptake from an electron donor.
Probab=67.86 E-value=13 Score=41.91 Aligned_cols=62 Identities=24% Similarity=0.206 Sum_probs=43.4
Q ss_pred CcccccCCCCCCCCC-CcccccHHHHHHHHHHHhhcCCCeEEeccc---cchhhhhhhhcCCcEEEEecc
Q 004491 457 HGTICYSPSNFPDAR-PETLQRTQAILSKLKYQIDKGLPIIGAGAG---TGISAKFEEAGGVDLIVLYNS 522 (749)
Q Consensus 457 ~~~~~~~~~~~~~~~-~~~~~~r~~il~~L~~~i~~~~piig~gaG---tGlsAk~ae~gGaDli~~yns 522 (749)
.+..+.+|..+||-. ||.+. ++++.||+.... +||+-=..+ ..-.|+.++++|+|+|.+-|.
T Consensus 182 ~g~~~isp~~~~~~~~~~~l~---~~I~~lr~~~~~-~pV~vK~~~~~~~~~~a~~~~~~g~D~I~VsG~ 247 (392)
T cd02808 182 PGVDLISPPPHHDIYSIEDLA---QLIEDLREATGG-KPIGVKLVAGHGEGDIAAGVAAAGADFITIDGA 247 (392)
T ss_pred CCccccCCCCCCCCCCHHHHH---HHHHHHHHhCCC-ceEEEEECCCCCHHHHHHHHHHcCCCEEEEeCC
Confidence 344566777777754 54443 367777776654 788654443 367788999999999999888
No 387
>PRK15108 biotin synthase; Provisional
Probab=67.79 E-value=2.1e+02 Score=31.95 Aligned_cols=146 Identities=10% Similarity=0.102 Sum_probs=89.1
Q ss_pred cCCCCCCHHHHHHHHHHcCccceecC-CcccccchhhhhhhhhcCCchHHHHHHHHHHHHcCCccc-cc----ccCHHHH
Q 004491 568 GTDPFRRVDYFLKQLESIGFFGVQNF-PTVGLFDGNFRQNLEETGMGYGLEVEMIDKAHKMGLLTT-PY----AFNEGEA 641 (749)
Q Consensus 568 atDP~~~~~~~l~~lk~~Gf~GV~Nf-PTvgliDG~fR~~LEe~G~gy~~EVemi~~A~~~gl~T~-~y----vf~~eqa 641 (749)
.+-=+.+ .+-+++||+.|..+++-. =| ..+.|++.. ++-.|+.=++.|+.|++.|+-++ .. .=+.+|.
T Consensus 129 ~s~G~ls-~e~l~~LkeAGld~~n~~leT---~p~~f~~I~--~~~~~~~rl~~i~~a~~~G~~v~sg~i~GlgEt~ed~ 202 (345)
T PRK15108 129 MTLGTLS-ESQAQRLANAGLDYYNHNLDT---SPEFYGNII--TTRTYQERLDTLEKVRDAGIKVCSGGIVGLGETVKDR 202 (345)
T ss_pred EeCCcCC-HHHHHHHHHcCCCEEeecccc---ChHhcCCCC--CCCCHHHHHHHHHHHHHcCCceeeEEEEeCCCCHHHH
Confidence 3333566 899999999999987543 23 245555444 34489999999999999999877 22 3356666
Q ss_pred HHHH----hc--cCcEEEeccCCCcccc-cccccccCHHHHHHHHHHHHHHHHHhCCCeEEEEccCC-CCCHHHHHHHHh
Q 004491 642 VKMA----KA--GADIIVAHMGLTTSGS-IGAKTALSLDESVDRVQAIADAAHRINPDAIVLCHGGP-ISSPSEAEFILK 713 (749)
Q Consensus 642 ~~Ma----~A--GaDiiv~h~GlT~gG~-~Ga~~~~sl~~~~~~~~~i~~aa~~~~pdii~l~hGGP-i~~p~d~~~~l~ 713 (749)
..++ +- .++-|-...=.-..|+ +......|..+..+.+ .++|=+.|+.++-+-||- ...++..+..|.
T Consensus 203 v~~~~~l~~l~~~~~~ip~~~~~P~~gTpl~~~~~~~~~e~lr~i----Ai~Rl~lp~~~i~i~~g~~~~~~~~~~~~l~ 278 (345)
T PRK15108 203 AGLLLQLANLPTPPESVPINMLVKVKGTPLADNDDVDAFDFIRTI----AVARIMMPTSYVRLSAGREQMNEQTQAMCFM 278 (345)
T ss_pred HHHHHHHHhccCCCCEEEeCCccCCCCCCCCCCCCCCHHHHHHHH----HHHHHHCCCceeeecccHhHhChhhHHHHHH
Confidence 6654 34 3444323222223344 4444456777777544 456777899665555554 445555555553
Q ss_pred hCCCccEEecCc
Q 004491 714 RTKGVHGFYGAS 725 (749)
Q Consensus 714 ~~~~~~Gf~g~S 725 (749)
.++++++-+.
T Consensus 279 --~Gan~~~~g~ 288 (345)
T PRK15108 279 --AGANSIFYGC 288 (345)
T ss_pred --cCCcEEEECC
Confidence 4556655443
No 388
>PLN03069 magnesiumprotoporphyrin-IX chelatase subunit H; Provisional
Probab=67.79 E-value=24 Score=45.68 Aligned_cols=153 Identities=15% Similarity=0.219 Sum_probs=90.6
Q ss_pred CCCcEEEEeccCC-----chHHHHHHHHHHHhcCccEEEEecCCCchH-HHHHH-HHc----CCceEEEeCchhhhhhhh
Q 004491 207 KEKCTVGITMFGV-----TTPCVNAVKERLEKEGYETMVFHATGVGGR-AMEAL-VKE----GFIQGVLDITTTEVADYV 275 (749)
Q Consensus 207 ~~kp~IgiTMFGv-----TTp~V~~~r~~Le~~GyEvlVFHATG~GGr-AME~L-i~e----G~~~gVlDlTttElaD~l 275 (749)
.++|+|||..+-. -|..++++.+.||++|+.|+..-++|.-.+ +++++ +.. =.+|+|+.+|-= -|
T Consensus 264 ~~~p~Vgil~~r~~~~~~~~~~idalI~~LE~~G~~vipvf~~gl~~~~~~~~~~~~~~~~~~~vDaiIn~tgF----~L 339 (1220)
T PLN03069 264 KDAPVVGLVLQRSHIVTGDDGHYVAVVMELEARGAKVVPIFAGGLDFSGPVERFFYDPITKKPIVDSVVSLTGF----AL 339 (1220)
T ss_pred CCCCEEEEEechhhhhcCCcHHHHHHHHHHHHCCCeEEEEEecCccccchHHHHHHhhhcCCCCccEEEECCcc----cc
Confidence 3489999987732 336689999999999999999999987643 67664 332 358999888752 14
Q ss_pred hCCccCCC-CchhhhhhhcCCCeEEecCcc---------ccccCCCCC-----CCCccccCC----ceeeecCcceEEec
Q 004491 276 VGGVMACD-SSRFDATIEKKIPLVLSVGAL---------DMVNFGAKD-----TIPSKFQRR----KIHVHNQQVSLMRT 336 (749)
Q Consensus 276 ~GGv~saG-p~RL~AA~~~GIPqVVspGal---------DmVnFG~~d-----tvPe~f~~R----~~~~HNp~vTlmRT 336 (749)
+||-.... +..-+.--+.+||++...=.. +-...+|.+ .+|| +.++ .+--..+.-..++.
T Consensus 340 ~ggpa~~~~~~a~~~L~~lnVPvl~~~~l~~qt~e~W~~s~~Gl~p~~~~~~ValPE-lDG~I~piv~~g~~~~~~~~~p 418 (1220)
T PLN03069 340 VGGPARQDHPKAIEALKKLDVPYLVALPLVFQTTEEWLDSTLGLHPIQVALQVALPE-LDGGLEPIVFAGRDSRTGKSHA 418 (1220)
T ss_pred cCCcccccchhhHHHHHHCCCCEEEEEecCCCCHHHHHhCCCCCCHHHhhheeechh-hCCceeeEEEEEEecCCCceec
Confidence 55533222 123344467899988754210 000111111 2222 1221 11111111124678
Q ss_pred CHHHHHHHHHHHHHHHc-----cCCCCeEEEee
Q 004491 337 TVDENKKFAAFIANKLN-----QSSSKIRLCLP 364 (749)
Q Consensus 337 t~eE~~~ig~~iA~kLn-----~a~gpv~vllP 364 (749)
-+|..+.+++.+..-++ .+.-++.|++-
T Consensus 419 i~eRie~la~r~~~w~~Lr~k~n~eKKVAIil~ 451 (1220)
T PLN03069 419 LHDRVEQLCTRAIKWANLKRKTKAEKKLAITVF 451 (1220)
T ss_pred CHHHHHHHHHHHHHHHHHccCChhhCEEEEEec
Confidence 89999988888877554 45567888874
No 389
>cd07949 PCA_45_Doxase_B_like_1 The B subunit of unknown Class III extradiol dioxygenases with similarity to Protocatechuate 4,5-dioxygenase. This subfamily is composed of proteins of unknown function with similarity to the B subunit of Protocatechuate 4,5-dioxygenase (LigAB). LigAB belongs to the class III extradiol dioxygenase family, a group of enzymes which use a non-heme Fe(II) to cleave aromatic rings between a hydroxylated carbon and an adjacent non-hydroxylated carbon. Dioxygenases play key roles in the degradation of aromatic compounds. LigAB-like enzymes are usually composed of two subunits, designated A and B, which form a tetramer composed of two copies of each subunit. This model represents the catalytic subunit, B.
Probab=67.69 E-value=24 Score=38.13 Aligned_cols=120 Identities=12% Similarity=0.113 Sum_probs=79.6
Q ss_pred hhhhhcCCCeEEecCc-cccccCCCCCCCCccccCCceeeecC--cceEE-----ecCHHHHHHHHHHHHHHHccCC-CC
Q 004491 288 DATIEKKIPLVLSVGA-LDMVNFGAKDTIPSKFQRRKIHVHNQ--QVSLM-----RTTVDENKKFAAFIANKLNQSS-SK 358 (749)
Q Consensus 288 ~AA~~~GIPqVVspGa-lDmVnFG~~dtvPe~f~~R~~~~HNp--~vTlm-----RTt~eE~~~ig~~iA~kLn~a~-gp 358 (749)
+.+.+.|||...+..- +| -| -.+|=+|-....-..=| ++.+- -.+++++.++|+.|++-+.+.. ..
T Consensus 106 ~~~~~~g~d~~~~~~~~lD---HG--~~vPL~~l~~~~d~~~pvV~i~~n~~~~p~~~~~~~~~lG~al~~~i~~~~~d~ 180 (276)
T cd07949 106 ESLVEDEFDITTCQEMLVD---HA--CTLPMQLFWPGAEWPIKVVPVSINTVQHPLPSPKRCFKLGQAIGRAIESYPEDL 180 (276)
T ss_pred HHHHHcCCCeeccCCCCCC---cc--hhhHHHHhcCccCCCCCEEEEEeccCCCCCCCHHHHHHHHHHHHHHHHhcCcCC
Confidence 3445789998877432 22 22 24666654432210111 22222 2378999999999999888653 35
Q ss_pred eEEEeeCCCCccc-CCCCCCCCChhhhHHHHHHHHHhcccCCCceEEecCCCCCCHHHHHHHHH
Q 004491 359 IRLCLPQNGISAL-DAPGKPFYDPEATGTLISELRTLIQTNEDRQVKVYPHNINDSEFADALVD 421 (749)
Q Consensus 359 v~vllP~~G~S~l-D~~G~pf~DPeAd~al~~~L~~~l~~~~~~~v~~~d~hINDp~FA~a~a~ 421 (749)
-.++|=.||+|+. +.|...+++++-|+.|.+.|+..++ .+ .+++++++.+.+.+
T Consensus 181 rv~iiaSG~lSH~l~~~~~g~~~~~fD~~~~~~l~~d~~-----~L----~~~~~~~~~~~AG~ 235 (276)
T cd07949 181 RVVVLGTGGLSHQLDGERAGFINKDFDRYCLDKMVDNPE-----WL----TKYSIEELVELAGT 235 (276)
T ss_pred CEEEEEeCccccCCCCCCcccchHHHHHHHHHHHhcCHH-----HH----HcCCHHHHHHHccc
Confidence 5688999999997 6665778999999999999984321 23 37777888887765
No 390
>PRK09549 mtnW 2,3-diketo-5-methylthiopentyl-1-phosphate enolase; Reviewed
Probab=67.67 E-value=59 Score=37.39 Aligned_cols=246 Identities=19% Similarity=0.194 Sum_probs=136.8
Q ss_pred CCCCCCCCCcccccHHHHHHHHHHHhhc-CCCeEEeccc--cchhhhh-------hhhcCCcEEEE---eccccccccCC
Q 004491 464 PSNFPDARPETLQRTQAILSKLKYQIDK-GLPIIGAGAG--TGISAKF-------EEAGGVDLIVL---YNSGRFRMAGR 530 (749)
Q Consensus 464 ~~~~~~~~~~~~~~r~~il~~L~~~i~~-~~piig~gaG--tGlsAk~-------ae~gGaDli~~---ynsGrfR~~G~ 530 (749)
|..|-.+=|..-+- ++.+|+.+.. ++|++|...= .|||++- .-.||+|||== +++-
T Consensus 108 P~~~~~~f~GP~fG----i~G~R~~lgv~~RPL~~tiiKP~~GLsp~~~a~~~y~~~~GGvD~IKDDE~l~~q------- 176 (407)
T PRK09549 108 SDELKRHFPGPKFG----IDGIRNLLGVHDRPLLMSIFKGVIGRDLDYLKEQLRDQALGGVDLVKDDEILFEN------- 176 (407)
T ss_pred CHHHHhcCCCCCCC----chhHHHHhCCCCCceEEEeecCccCCCHHHHHHHHHHHHhcCCcceecCcCCCCC-------
Confidence 44443333444443 2455555555 8999998763 7888653 45689999851 1111
Q ss_pred ccccccccccCchHHHHHhhhhhcCCCCCCceEEeeccCCCCCCHHHHHHHHHHcCccce-ecCCcccccchhhhhhhhh
Q 004491 531 GSLAGLLPFADANAVVLEMANEVLPVVKEVPVLAGVCGTDPFRRVDYFLKQLESIGFFGV-QNFPTVGLFDGNFRQNLEE 609 (749)
Q Consensus 531 ~SlagllpygdaN~iv~e~~~eilp~v~~tPViaGv~atDP~~~~~~~l~~lk~~Gf~GV-~NfPTvgliDG~fR~~LEe 609 (749)
-+.||.+-=..+++..++.--... -.++.-+|-|++...|.+-.+.+++.|-..| .|+-++|+ +. + +.|.+
T Consensus 177 ----~~~p~~eRv~~~~~a~~~a~~eTG-~~~~y~~NiT~~~~em~~ra~~a~~~G~~~~m~~~~~~G~-~a-l-~~l~~ 248 (407)
T PRK09549 177 ----ALTPFEKRIVAGKEVLQEVYETTG-HKTLYAVNLTGRTFELKEKAKRAAEAGADALLFNVFAYGL-DV-L-QSLAE 248 (407)
T ss_pred ----CCcCHHHHHHHHHHHHHHHHHhhC-CcceEEEecCCCHHHHHHHHHHHHHcCCCeEEEeccccch-HH-H-HHHHh
Confidence 345676666666666654444443 3678889999998899999999999997665 45544443 22 1 11111
Q ss_pred cCCchHHHHHHHHHHHHcCC--cc----cccccCHHHHHHHHhccCcEEEeccCCCcccccccccccCHHHHHHHHHH--
Q 004491 610 TGMGYGLEVEMIDKAHKMGL--LT----TPYAFNEGEAVKMAKAGADIIVAHMGLTTSGSIGAKTALSLDESVDRVQA-- 681 (749)
Q Consensus 610 ~G~gy~~EVemi~~A~~~gl--~T----~~yvf~~eqa~~Ma~AGaDiiv~h~GlT~gG~~Ga~~~~sl~~~~~~~~~-- 681 (749)
+.+..+.=.||..+. +| ..+-|..--++-|-=+|||.+.. + |.+|.+. .+-++|.+.++.
T Consensus 249 -----~~~~~lpIhaHra~~ga~~r~~~~Gis~~~~l~kl~RLaGaD~~~~--~-~~~Gk~~----~~~~~~~~~~~~~~ 316 (407)
T PRK09549 249 -----DPEIPVPIMAHPAVSGAYTPSPLYGISSPLLLGKLLRYAGADFSLF--P-SPYGSVA----LEKEEALAIAKELT 316 (407)
T ss_pred -----cCCCCcEEEecCCcccccccCCCCcCcHHHHHHHHHHHcCCCcccc--C-CCcCCcC----CCHHHHHHHHHHHh
Confidence 001111111333221 22 12222233567788899999654 4 4566664 344444443332
Q ss_pred ---------------------HHHHHHHhCCCeEEEEccCCCCCHHHHH----HHHhhCCCccEEecCcccccchHHHH-
Q 004491 682 ---------------------IADAAHRINPDAIVLCHGGPISSPSEAE----FILKRTKGVHGFYGASSMERLPVEQA- 735 (749)
Q Consensus 682 ---------------------i~~aa~~~~pdii~l~hGGPi~~p~d~~----~~l~~~~~~~Gf~g~Ss~ERlP~E~a- 735 (749)
+-+..+...+|+|++|-||=..-|+..+ .+-+. ++. .++-+|+|.+
T Consensus 317 ~~~~~~k~~~Pv~sGG~~~~~~p~~~~~~G~D~il~~GGgi~gHp~G~~aGa~A~rqA---~ea-----~~~g~~l~~~a 388 (407)
T PRK09549 317 EDDDPFKRSFPVPSAGIHPGLVPLLIRDFGKDVVINAGGGIHGHPNGAQGGGKAFRAA---IDA-----VLQGKPLHEAA 388 (407)
T ss_pred ccccCCCccEEeecCCCChhHHHHHHHHhCCceEEecCCceecCCCCchhHHHHHHHH---HHH-----HHcCCCHHHHh
Confidence 2233455678888888777666565432 22222 222 1233455544
Q ss_pred -----HHHHHHhhccccc
Q 004491 736 -----ITSTMRQYKSISI 748 (749)
Q Consensus 736 -----i~~~~~~FK~~~~ 748 (749)
+......|+.++.
T Consensus 389 ~~~~eL~~Al~~wg~~~~ 406 (407)
T PRK09549 389 EDDENLHSALDIWGNPSV 406 (407)
T ss_pred hcCHHHHHHHHHhcCccc
Confidence 6777778877653
No 391
>PRK13587 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=67.59 E-value=68 Score=33.74 Aligned_cols=141 Identities=16% Similarity=0.183 Sum_probs=87.9
Q ss_pred HHHHHHHHHHhhcCCC-eEEeccccchhhhhhhhcCCcEEEEeccccccccCCccccccccccCchHHHHHhhhhhcCCC
Q 004491 479 QAILSKLKYQIDKGLP-IIGAGAGTGISAKFEEAGGVDLIVLYNSGRFRMAGRGSLAGLLPFADANAVVLEMANEVLPVV 557 (749)
Q Consensus 479 ~~il~~L~~~i~~~~p-iig~gaGtGlsAk~ae~gGaDli~~ynsGrfR~~G~~SlagllpygdaN~iv~e~~~eilp~v 557 (749)
.++++++.+.+ +.| .+|+|.-+=-.+|-.-..|||-++ .||--+. | =+++.+++++. |
T Consensus 65 ~~~I~~i~~~~--~~pi~vGGGIrs~e~v~~~l~~Ga~kvv-igt~a~~--------------~-~~~l~~~~~~f-g-- 123 (234)
T PRK13587 65 FDYIKSLRRLT--TKDIEVGGGIRTKSQIMDYFAAGINYCI-VGTKGIQ--------------D-TDWLKEMAHTF-P-- 123 (234)
T ss_pred HHHHHHHHhhc--CCeEEEcCCcCCHHHHHHHHHCCCCEEE-ECchHhc--------------C-HHHHHHHHHHc-C--
Confidence 45777777643 345 355666666667777789999986 4554443 1 23555555443 3
Q ss_pred CCCceEEeeccCC-----------CCCCHHHHHHHHHHcCccc--eecCCcccccchhhhhhhhhcCCchHHH-HHHHHH
Q 004491 558 KEVPVLAGVCGTD-----------PFRRVDYFLKQLESIGFFG--VQNFPTVGLFDGNFRQNLEETGMGYGLE-VEMIDK 623 (749)
Q Consensus 558 ~~tPViaGv~atD-----------P~~~~~~~l~~lk~~Gf~G--V~NfPTvgliDG~fR~~LEe~G~gy~~E-Vemi~~ 623 (749)
+- ++.++-..+ --.+...|++++.++|+.+ +++.-..|... |++.| ++-++.
T Consensus 124 -~~-ivvslD~~~g~v~~~gw~~~~~~~~~~~~~~~~~~g~~~ii~tdi~~dGt~~------------G~~~~li~~l~~ 189 (234)
T PRK13587 124 -GR-IYLSVDAYGEDIKVNGWEEDTELNLFSFVRQLSDIPLGGIIYTDIAKDGKMS------------GPNFELTGQLVK 189 (234)
T ss_pred -CC-EEEEEEeeCCEEEecCCcccCCCCHHHHHHHHHHcCCCEEEEecccCcCCCC------------ccCHHHHHHHHH
Confidence 11 334443322 1245689999999999998 45555444444 46666 344443
Q ss_pred HHHcCCcccccccCHHHHHHHHhccCcEEEe
Q 004491 624 AHKMGLLTTPYAFNEGEAVKMAKAGADIIVA 654 (749)
Q Consensus 624 A~~~gl~T~~yvf~~eqa~~Ma~AGaDiiv~ 654 (749)
....-+..-.=+.+.++.++..+.|+|-+++
T Consensus 190 ~~~ipvi~~GGi~s~edi~~l~~~G~~~viv 220 (234)
T PRK13587 190 ATTIPVIASGGIRHQQDIQRLASLNVHAAII 220 (234)
T ss_pred hCCCCEEEeCCCCCHHHHHHHHHcCCCEEEE
Confidence 3334455555678999999999999997775
No 392
>PRK12833 acetyl-CoA carboxylase biotin carboxylase subunit; Provisional
Probab=67.52 E-value=1.7e+02 Score=33.77 Aligned_cols=151 Identities=16% Similarity=0.269 Sum_probs=93.0
Q ss_pred hhhhhhhcCCcEEEEeccccccccCCccccccccccCchHHHHHhhhhhcCCCCCCceEEeeccCCCCCCHHHHHHHHHH
Q 004491 505 SAKFEEAGGVDLIVLYNSGRFRMAGRGSLAGLLPFADANAVVLEMANEVLPVVKEVPVLAGVCGTDPFRRVDYFLKQLES 584 (749)
Q Consensus 505 sAk~ae~gGaDli~~ynsGrfR~~G~~SlagllpygdaN~iv~e~~~eilp~v~~tPViaGv~atDP~~~~~~~l~~lk~ 584 (749)
..|.+.+-|...+++|+. .|.|..-..++++..-+.. -...+.|.+.+..++-+++
T Consensus 20 ii~aa~~lG~~~v~~~s~-----------------~d~~~~~~~~aD~~~~i~p-------~~~~~~y~d~~~i~~~a~~ 75 (467)
T PRK12833 20 IIRAARELGMRTVAACSD-----------------ADRDSLAARMADEAVHIGP-------SHAAKSYLNPAAILAAARQ 75 (467)
T ss_pred HHHHHHHcCCeEEEEECC-----------------CCCCChhHHhCCEEEecCC-------CCccccccCHHHHHHHHHH
Confidence 445667778877766532 1223233345554222211 1234578899999999999
Q ss_pred cCccceecCCcccccc--hhhhhhhhhcCC---chHHHH--------HHHHHHHHcCCcccccc----cCHHHHHHHH-h
Q 004491 585 IGFFGVQNFPTVGLFD--GNFRQNLEETGM---GYGLEV--------EMIDKAHKMGLLTTPYA----FNEGEAVKMA-K 646 (749)
Q Consensus 585 ~Gf~GV~NfPTvgliD--G~fR~~LEe~G~---gy~~EV--------emi~~A~~~gl~T~~yv----f~~eqa~~Ma-~ 646 (749)
.++.+|. |..|... ..|.+.+|+.|+ |-+-|. .+-+.+.+.|+-|.|+. -+.+|+.+.+ +
T Consensus 76 ~~~daI~--pg~g~lsE~~~~~~~~e~~gi~~igps~~ai~~~~DK~~~r~~l~~~GIp~~p~~~~~v~~~~e~~~~~~~ 153 (467)
T PRK12833 76 CGADAIH--PGYGFLSENAAFAEAVEAAGLIFVGPDAQTIRTMGDKARARRTARRAGVPTVPGSDGVVASLDAALEVAAR 153 (467)
T ss_pred hCCCEEE--ECCCccccCHHHHHHHHHcCCCccCCCHHHHHHhcCHHHHHHHHHHcCCCCCCCcCcCcCCHHHHHHHHHH
Confidence 9998885 5555433 577888988886 333332 34456889999999874 4677877654 4
Q ss_pred ccCcEEEeccCCCcccccccccccCHHHHHHHHHHHH
Q 004491 647 AGADIIVAHMGLTTSGSIGAKTALSLDESVDRVQAIA 683 (749)
Q Consensus 647 AGaDiiv~h~GlT~gG~~Ga~~~~sl~~~~~~~~~i~ 683 (749)
-|--+++=-.. -||..|.....+.+|..+..+...
T Consensus 154 igyPvvvKp~~--gggg~Gv~~v~~~~eL~~a~~~~~ 188 (467)
T PRK12833 154 IGYPLMIKAAA--GGGGRGIRVAHDAAQLAAELPLAQ 188 (467)
T ss_pred hCCCEEEEECC--CCCCCeEEEECCHHHHHHHHHHHH
Confidence 46555554322 356778777777777665555443
No 393
>PRK10481 hypothetical protein; Provisional
Probab=67.42 E-value=24 Score=37.30 Aligned_cols=36 Identities=25% Similarity=0.356 Sum_probs=31.7
Q ss_pred cccHHHHHHHHHHHhhcCCCeEEeccccchhhhhhhhcCCcEEEEeccccccc
Q 004491 475 LQRTQAILSKLKYQIDKGLPIIGAGAGTGISAKFEEAGGVDLIVLYNSGRFRM 527 (749)
Q Consensus 475 ~~~r~~il~~L~~~i~~~~piig~gaGtGlsAk~ae~gGaDli~~ynsGrfR~ 527 (749)
.++|+.|..+|+++|++ .|+.|+|.|++.++|.|.-
T Consensus 69 ~~s~~~v~~~lq~~i~~-----------------l~~~g~d~ivl~Ctgdfp~ 104 (224)
T PRK10481 69 HVSKQKVERDLQSVIEV-----------------LDNQGYDVILLLCTGEFPS 104 (224)
T ss_pred EEEHHHHHHHHHHHHHH-----------------HHhCCCCEEEEEecCCCCC
Confidence 46789999999999975 6889999999999999875
No 394
>PF03437 BtpA: BtpA family; InterPro: IPR005137 Photosystem I (PSI) is a large protein complex embedded within the photosynthetic thylakoid membrane. It consists of 11 subunits, ~100 chlorophyll a molecules, 2 phylloquinones, and 3 Fe4S4-clusters. The three dimensional structure of the PSI complex has been resolved at 2.5 A [], which allows the precise localisation of each cofactor. PSI together with photosystem II (PSII) catalyses the light-induced steps in oxygenic photosynthesis - a process found in cyanobacteria, eukaryotic algae (e.g. red algae, green algae) and higher plants. To date, three thylakoid proteins involved in the stable accumulation of PSI have been identified: BtpA [], Ycf3 [, ], and Ycf4 (IPR003359 from INTERPRO) []. Because translation of the psaA and psaB mRNAs encoding the two reaction centre polypeptides, of PSI and PSII respectively, is not affected in mutant strains lacking functional ycf3 and ycf4, the products of these two genes appear to act at a post-translational step of PSI biosynthesis. These gene products are therefore involved either in the stabilisation or in the assembly of the PSI complex. However, their exact roles remain unknown. The BtpA protein appears to act at the level of PSI stabilisation []. It is an extrinsic membrane protein located on the cytoplasmic side of the thylakoid membrane [, ]. Homologs of BtpA are found in the crenarchaeota and euryarchaeota, where their function remains unknown. The Ycf4 protein is firmly associated with the thylakoid membrane, presumably through a transmembrane domain []. Ycf4 co-fractionates with a protein complex larger than PSI upon sucrose density gradient centrifugation of solubilised thylakoids []. The Ycf3 protein is loosely associated with the thylakoid membrane and can be released from the membrane with sodium carbonate. This suggests that Ycf3 is not part of a stable complex and that it probably interacts transiently with its partners []. Ycf3 contains a number of tetratrico peptide repeats (TPR, IPR001440 from INTERPRO); TPR is a structural motif present in a wide range of proteins, which mediates protein-protein interactions.
Probab=67.21 E-value=32 Score=37.11 Aligned_cols=196 Identities=23% Similarity=0.297 Sum_probs=114.2
Q ss_pred cHHHHHHHHHHHhhcCCCeEEeccccchhhhhhhhcCCcEEEEeccc--cccccCCccccccccccCchHHHHHhh---h
Q 004491 477 RTQAILSKLKYQIDKGLPIIGAGAGTGISAKFEEAGGVDLIVLYNSG--RFRMAGRGSLAGLLPFADANAVVLEMA---N 551 (749)
Q Consensus 477 ~r~~il~~L~~~i~~~~piig~gaGtGlsAk~ae~gGaDli~~ynsG--rfR~~G~~SlagllpygdaN~iv~e~~---~ 551 (749)
+-++|+++..+. |+.-+++|+|=|++=|-+ .|... -.-+++-.|+ +
T Consensus 23 ~~~~iie~A~~e-----------------a~~l~~~GvDgiiveN~~D~Py~~~------------~~~etvaaM~~i~~ 73 (254)
T PF03437_consen 23 SMEEIIERAVRE-----------------AEALEEGGVDGIIVENMGDVPYPKR------------VGPETVAAMARIAR 73 (254)
T ss_pred CHHHHHHHHHHH-----------------HHHHHHCCCCEEEEecCCCCCccCC------------CCHHHHHHHHHHHH
Confidence 678899888876 567899999999996643 34321 2235666666 5
Q ss_pred hhcCCCCCCceEEeeccCCCCCCHHHHH----HHHHHcCccceecCCcccccchhhhhhhhhc-CCchHHHHHHH---HH
Q 004491 552 EVLPVVKEVPVLAGVCGTDPFRRVDYFL----KQLESIGFFGVQNFPTVGLFDGNFRQNLEET-GMGYGLEVEMI---DK 623 (749)
Q Consensus 552 eilp~v~~tPViaGv~atDP~~~~~~~l----~~lk~~Gf~GV~NfPTvgliDG~fR~~LEe~-G~gy~~EVemi---~~ 623 (749)
||-..+ ++|+=.-+...||.-.+.-=. +=++--.|.|.-= ..-|++++...+.|+-. -++.+ |.++ +.
T Consensus 74 ~v~~~~-~~p~GVnvL~nd~~aalaiA~A~ga~FIRv~~~~g~~~-~d~G~~~~~a~e~~r~R~~l~a~--v~ilaDV~~ 149 (254)
T PF03437_consen 74 EVRREV-SVPVGVNVLRNDPKAALAIAAATGADFIRVNVFVGAYV-TDEGIIEGCAGELLRYRKRLGAD--VKILADVHV 149 (254)
T ss_pred HHHHhC-CCCEEeeeecCCCHHHHHHHHHhCCCEEEecCEEceec-ccCccccccHHHHHHHHHHcCCC--eEEEeeech
Confidence 777766 477533355668765443111 1122235555332 44688888777666421 11111 2221 11
Q ss_pred HHHcCCcccccccCHHHHHHH-HhccCcEEEeccCCCcccccccccccCHHHHHHHHHHHHHHHHHhCCCeEEEEccCCC
Q 004491 624 AHKMGLLTTPYAFNEGEAVKM-AKAGADIIVAHMGLTTSGSIGAKTALSLDESVDRVQAIADAAHRINPDAIVLCHGGPI 702 (749)
Q Consensus 624 A~~~gl~T~~yvf~~eqa~~M-a~AGaDiiv~h~GlT~gG~~Ga~~~~sl~~~~~~~~~i~~aa~~~~pdii~l~hGGPi 702 (749)
=|..-|.+-+. ++.++.. ...+||.||+= |-..|.. .++++ +++ +++.-| +-||+-+|
T Consensus 150 kh~~~l~~~~~---~~~~~~a~~~~~aDaviVt-----G~~TG~~--~~~~~----l~~----vr~~~~-~PVlvGSG-- 208 (254)
T PF03437_consen 150 KHSSPLATRDL---EEAAKDAVERGGADAVIVT-----GKATGEP--PDPEK----LKR----VREAVP-VPVLVGSG-- 208 (254)
T ss_pred hhcccCCCCCH---HHHHHHHHHhcCCCEEEEC-----CcccCCC--CCHHH----HHH----HHhcCC-CCEEEecC--
Confidence 22222333331 3445444 58899999973 4444443 23332 233 334344 56777777
Q ss_pred CCHHHHHHHHhhCCCccEEecCccccc
Q 004491 703 SSPSEAEFILKRTKGVHGFYGASSMER 729 (749)
Q Consensus 703 ~~p~d~~~~l~~~~~~~Gf~g~Ss~ER 729 (749)
.+++-+..+|+. +||+|=||+|.+
T Consensus 209 vt~~Ni~~~l~~---ADG~IVGS~~K~ 232 (254)
T PF03437_consen 209 VTPENIAEYLSY---ADGAIVGSYFKK 232 (254)
T ss_pred CCHHHHHHHHHh---CCEEEEeeeeee
Confidence 799999999855 799999999984
No 395
>TIGR00433 bioB biotin synthetase. Catalyzes the last step of the biotin biosynthesis pathway.
Probab=67.18 E-value=29 Score=36.77 Aligned_cols=88 Identities=17% Similarity=0.188 Sum_probs=49.0
Q ss_pred HHHHHHcCCcc--cccccCHHHHHHHHhccCcEEEeccCCCcccccc-cccccCHHHHHHHHHHHHHHHHHhCCCeEEEE
Q 004491 621 IDKAHKMGLLT--TPYAFNEGEAVKMAKAGADIIVAHMGLTTSGSIG-AKTALSLDESVDRVQAIADAAHRINPDAIVLC 697 (749)
Q Consensus 621 i~~A~~~gl~T--~~yvf~~eqa~~Ma~AGaDiiv~h~GlT~gG~~G-a~~~~sl~~~~~~~~~i~~aa~~~~pdii~l~ 697 (749)
.+..++.|+-. ..-..++|+++.|.+||+|.+..-+- +.--..- ..+..|.++..+.++.+.++.-.+...+|+ -
T Consensus 104 ~~~~~~~~i~~~~~~g~~~~e~l~~Lk~aG~~~v~i~~E-~~~~~~~~i~~~~s~~~~~~ai~~l~~~Gi~v~~~~i~-G 181 (296)
T TIGR00433 104 VQIVEEMGLKTCATLGLLDPEQAKRLKDAGLDYYNHNLD-TSQEFYSNIISTHTYDDRVDTLENAKKAGLKVCSGGIF-G 181 (296)
T ss_pred HHHHHhCCCeEEecCCCCCHHHHHHHHHcCCCEEEEccc-CCHHHHhhccCCCCHHHHHHHHHHHHHcCCEEEEeEEE-e
Confidence 34445556521 11245789999999999998776555 2111111 122457777777777666654444443333 2
Q ss_pred ccCCCCCHHHHHHHHh
Q 004491 698 HGGPISSPSEAEFILK 713 (749)
Q Consensus 698 hGGPi~~p~d~~~~l~ 713 (749)
+ -.+.+|+...++
T Consensus 182 l---~et~~d~~~~~~ 194 (296)
T TIGR00433 182 L---GETVEDRIGLAL 194 (296)
T ss_pred C---CCCHHHHHHHHH
Confidence 3 346777666554
No 396
>PF04481 DUF561: Protein of unknown function (DUF561); InterPro: IPR007570 Protein in this entry are of unknown function and are found in cyanobacteria and the chloroplasts of algae. As the family is exclusively found in phototrophic organisms it may play a role in photosynthesis.
Probab=67.03 E-value=25 Score=37.45 Aligned_cols=186 Identities=25% Similarity=0.416 Sum_probs=119.3
Q ss_pred hhhhhhhcCCcEEEEeccccccccCCccccccccccCchHHHHHhhhhhcCCCCCCceEEeeccCCCCCCHHHHHHHHHH
Q 004491 505 SAKFEEAGGVDLIVLYNSGRFRMAGRGSLAGLLPFADANAVVLEMANEVLPVVKEVPVLAGVCGTDPFRRVDYFLKQLES 584 (749)
Q Consensus 505 sAk~ae~gGaDli~~ynsGrfR~~G~~SlagllpygdaN~iv~e~~~eilp~v~~tPViaGv~atDP~~~~~~~l~~lk~ 584 (749)
.+|+|++||||||=+ -|+.-..++++++ .+.||. |.+-|| +.|....+
T Consensus 32 i~~AA~~ggAt~vDI---------------------Aadp~LV~~~~~~----s~lPIC--VSaVep----~~f~~aV~- 79 (242)
T PF04481_consen 32 IVKAAEIGGATFVDI---------------------AADPELVKLAKSL----SNLPIC--VSAVEP----ELFVAAVK- 79 (242)
T ss_pred HHHHHHccCCceEEe---------------------cCCHHHHHHHHHh----CCCCeE--eecCCH----HHHHHHHH-
Confidence 589999999999964 2455556677653 356765 566676 45555544
Q ss_pred cCcc--ceecCCcccccchhhhhhhhhcCCchHHHHHHHHHHHHc-CC-------cccccccCHHH----HHHHHhccCc
Q 004491 585 IGFF--GVQNFPTVGLFDGNFRQNLEETGMGYGLEVEMIDKAHKM-GL-------LTTPYAFNEGE----AVKMAKAGAD 650 (749)
Q Consensus 585 ~Gf~--GV~NfPTvgliDG~fR~~LEe~G~gy~~EVemi~~A~~~-gl-------~T~~yvf~~eq----a~~Ma~AGaD 650 (749)
.|-. =|-|| +.+=..|.-|+-| |.|.+.+|- .| .|+||....+| |.++.++|||
T Consensus 80 AGAdliEIGNf-----------DsFY~qGr~f~a~-eVL~Lt~~tR~LLP~~~LsVTVPHiL~ld~Qv~LA~~L~~~GaD 147 (242)
T PF04481_consen 80 AGADLIEIGNF-----------DSFYAQGRRFSAE-EVLALTRETRSLLPDITLSVTVPHILPLDQQVQLAEDLVKAGAD 147 (242)
T ss_pred hCCCEEEecch-----------HHHHhcCCeecHH-HHHHHHHHHHHhCCCCceEEecCccccHHHHHHHHHHHHHhCCc
Confidence 3322 12344 3344556666654 444444442 22 48999999876 5556689999
Q ss_pred EEEeccCCCcccccccccccCHHHHHHHHHHHHHHHHHh--CCCeEEEEccC--CCCCHHHHHHHHhhCCCccEEecCcc
Q 004491 651 IIVAHMGLTTSGSIGAKTALSLDESVDRVQAIADAAHRI--NPDAIVLCHGG--PISSPSEAEFILKRTKGVHGFYGASS 726 (749)
Q Consensus 651 iiv~h~GlT~gG~~Ga~~~~sl~~~~~~~~~i~~aa~~~--~pdii~l~hGG--Pi~~p~d~~~~l~~~~~~~Gf~g~Ss 726 (749)
+|= |.||+.-..+...+..-++++--=..+++++ .-++-|||--| .++.|--+ ..+..|--=||.
T Consensus 148 iIQ-----TEGgtss~p~~~g~lglIekaapTLAaay~ISr~v~iPVlcASGlS~vT~PmAi------aaGAsGVGVGSa 216 (242)
T PF04481_consen 148 IIQ-----TEGGTSSKPTSPGILGLIEKAAPTLAAAYAISRAVSIPVLCASGLSAVTAPMAI------AAGASGVGVGSA 216 (242)
T ss_pred EEE-----cCCCCCCCCCCcchHHHHHHHhHHHHHHHHHHhccCCceEeccCcchhhHHHHH------HcCCcccchhHH
Confidence 995 6677766555555555555544444444443 34567888877 34444322 245678888999
Q ss_pred cccchHHHHHHHHHHhhcc
Q 004491 727 MERLPVEQAITSTMRQYKS 745 (749)
Q Consensus 727 ~ERlP~E~ai~~~~~~FK~ 745 (749)
+-||--|.+|...+++.+.
T Consensus 217 vn~Ln~~~aMva~vr~l~~ 235 (242)
T PF04481_consen 217 VNRLNDEVAMVAAVRSLVE 235 (242)
T ss_pred hhhcccHHHHHHHHHHHHH
Confidence 9999999999999998765
No 397
>TIGR00419 tim triosephosphate isomerase. Triosephosphate isomerase (tim/TPIA) is the glycolytic enzyme that catalyzes the reversible interconversion of glyceraldehyde 3-phosphate and dihydroxyacetone phosphate. The active site of the enzyme is located between residues 240-258 of the model ([AV]-Y-E-P-[LIVM]-W-[SA]-I-G-T-[GK]) with E being the active site residue. There is a slight deviation from this sequence within the archeal members of this family.
Probab=67.00 E-value=40 Score=35.17 Aligned_cols=153 Identities=20% Similarity=0.221 Sum_probs=81.1
Q ss_pred eEEeeccCCCCCCHHHHHHHHHHcCccceecC-C-cccccchhhh-hhhhhcCC------------chHHHHHHHHHHHH
Q 004491 562 VLAGVCGTDPFRRVDYFLKQLESIGFFGVQNF-P-TVGLFDGNFR-QNLEETGM------------GYGLEVEMIDKAHK 626 (749)
Q Consensus 562 ViaGv~atDP~~~~~~~l~~lk~~Gf~GV~Nf-P-TvgliDG~fR-~~LEe~G~------------gy~~EVemi~~A~~ 626 (749)
|-..+|. ||..+....+.++ =.-|-||. + .-|-+-|..- +.|.+.|. +...--+-++.|.+
T Consensus 33 ~~v~v~P--p~~~L~~~~~~~~--i~vgAQn~~~~~~Ga~TGevS~~mLkd~G~~~viiGHSERRf~Etdi~~Kv~~a~~ 108 (205)
T TIGR00419 33 VAVAVAP--PFVDLPMIKREVE--IPVYAQHVDAVLSGAHTGEISAEMLKDIGAKGTLINHSERRMKLADIEKKIARLKE 108 (205)
T ss_pred cEEEEEC--CHHHHHHHHHhcC--ceEEecccccccCCCccCcCCHHHHHHcCCCEEEECcccCCCCccHHHHHHHHHHH
Confidence 3344554 4545554444443 33566764 2 2233333332 34444444 44443456788999
Q ss_pred cCCcccccccCHHHHHHHHhccCcEEEeccCCCcccccccccccCHHHHHHHHHHHHHHHHHhCCCeEEEEccCCCCCHH
Q 004491 627 MGLLTTPYAFNEGEAVKMAKAGADIIVAHMGLTTSGSIGAKTALSLDESVDRVQAIADAAHRINPDAIVLCHGGPISSPS 706 (749)
Q Consensus 627 ~gl~T~~yvf~~eqa~~Ma~AGaDiiv~h~GlT~gG~~Ga~~~~sl~~~~~~~~~i~~aa~~~~pdii~l~hGGPi~~p~ 706 (749)
.||-.+--+-+..+...-....-++|-.-.=|- ||..+..|.+++-+..+.|. ..+++.+++ .+.|||-|+.-.
T Consensus 109 ~gl~~IvCi~~v~~q~~~~~~~~~vIAYEPvWA----IGtG~~as~~~~~~v~~~ir-~~~~~~~~~-~IlYGGSV~~~N 182 (205)
T TIGR00419 109 LGLTSVVCTNNVLTTAAAAALEPDVVAVEPPEL----IGTGIPVSPAQPEVVHGSVR-AVKEVNESV-RVLCGAGISTGE 182 (205)
T ss_pred CCCEEEEEEHHHHHHHHhhhhcCeEEEECCHHH----hCCCCCCCHHHHHHHHHHHH-hhhhhcCCc-eEEEeCCCCHHH
Confidence 999877666333332222222223333334443 44555667777655554444 344555555 555888886555
Q ss_pred HHHHHHhhCCCccEEecCcc
Q 004491 707 EAEFILKRTKGVHGFYGASS 726 (749)
Q Consensus 707 d~~~~l~~~~~~~Gf~g~Ss 726 (749)
+.+ ++.. +++||+.-||+
T Consensus 183 ~~~-l~~~-~~iDG~LvG~A 200 (205)
T TIGR00419 183 DAE-LAAQ-LGAEGVLLASG 200 (205)
T ss_pred HHH-HhcC-CCCCEEEEeee
Confidence 554 4545 88999875553
No 398
>PF01884 PcrB: PcrB family; InterPro: IPR008205 This entry represents geranylgeranylglyceryl phosphate (GGGP) synthase, which is a prenyltransferase that catalyses the transfer of the geranylgeranyl moiety of geranylgeranyl diphosphate (GGPP) to the C3 hydroxyl of sn-glycerol-1-phosphate (G1P). This reaction is the first ether-bond-formation step in the biosynthesis of archaeal membrane lipids. This entry also matches putative glycerol-1-phosphate prenyltransferases that may catalyse the transfer of a prenyl moiety to sn-glycerol-1-phosphate (G1P) []. Some of the prokaryotic proteins in this family are related to pcrB. The Staphylococcus aureus chromosomal gene pcrA encodes a protein with significant similarity (40% identity) to two Escherichia coli helicases: the helicase II encoded by the uvrD gene and the Rep helicase. PcrB gene seems to belong to an operon containing at least one other gene, pcrBA, downstream from pcrB []. The PcrB proteins often contain an FMN binding site although the function of these proteins is still unknown.; GO: 0016765 transferase activity, transferring alkyl or aryl (other than methyl) groups; PDB: 1VIZ_A 2F6X_B 2F6U_B 3VKD_A 3VKA_A 3VK5_B 3VKC_B 3VKB_B.
Probab=66.92 E-value=5.5 Score=42.25 Aligned_cols=46 Identities=35% Similarity=0.203 Sum_probs=0.0
Q ss_pred hcCCchHHHH-HHHHHHHHcCCcccccc----cCHHHHHHHHhccCcEEEe
Q 004491 609 ETGMGYGLEV-EMIDKAHKMGLLTTPYA----FNEGEAVKMAKAGADIIVA 654 (749)
Q Consensus 609 e~G~gy~~EV-emi~~A~~~gl~T~~yv----f~~eqa~~Ma~AGaDiiv~ 654 (749)
|.|-|=...| +.+.++++.=.=+.=+| .|.|||+.|++||||+||.
T Consensus 160 EaGSGa~~~v~~~v~~~~~~~~~~~LivGGGIrs~e~A~~~~~aGAD~IVv 210 (230)
T PF01884_consen 160 EAGSGAYGPVPEEVIAAVKKLSDIPLIVGGGIRSPEQAREMAEAGADTIVV 210 (230)
T ss_dssp E--TTSSS-HHHHHHHHHHHSSSSEEEEESS--SHHHHHHHHCTTSSEEEE
T ss_pred EeCCCCCCCccHHHHHHHHhcCCccEEEeCCcCCHHHHHHHHHCCCCEEEE
No 399
>cd06281 PBP1_LacI_like_5 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=66.78 E-value=53 Score=33.30 Aligned_cols=65 Identities=18% Similarity=0.337 Sum_probs=40.4
Q ss_pred HHHHHHHHHHhcCccEEEEecCCCch----HHHHHHHHcCCceEEEeCchhhhhhhhhCCccCCCCchhhhhhhcCCCeE
Q 004491 223 CVNAVKERLEKEGYETMVFHATGVGG----RAMEALVKEGFIQGVLDITTTEVADYVVGGVMACDSSRFDATIEKKIPLV 298 (749)
Q Consensus 223 ~V~~~r~~Le~~GyEvlVFHATG~GG----rAME~Li~eG~~~gVlDlTttElaD~l~GGv~saGp~RL~AA~~~GIPqV 298 (749)
-...+.+.++++||+++++-+ ...- +..+.| .+..+||++=...++ ..+..++.+.+.+||.|
T Consensus 17 ~~~~i~~~a~~~g~~~~~~~~-~~~~~~~~~~i~~l-~~~~vdgii~~~~~~-----------~~~~~~~~~~~~~ipvV 83 (269)
T cd06281 17 LFSGAEDRLRAAGYSLLIANS-LNDPERELEILRSF-EQRRMDGIIIAPGDE-----------RDPELVDALASLDLPIV 83 (269)
T ss_pred HHHHHHHHHHHcCCEEEEEeC-CCChHHHHHHHHHH-HHcCCCEEEEecCCC-----------CcHHHHHHHHhCCCCEE
Confidence 345666777889999887644 3322 344444 446799998332211 12345666667899998
Q ss_pred Ee
Q 004491 299 LS 300 (749)
Q Consensus 299 Vs 300 (749)
+.
T Consensus 84 ~i 85 (269)
T cd06281 84 LL 85 (269)
T ss_pred EE
Confidence 86
No 400
>COG0149 TpiA Triosephosphate isomerase [Carbohydrate transport and metabolism]
Probab=66.75 E-value=39 Score=36.51 Aligned_cols=179 Identities=21% Similarity=0.248 Sum_probs=106.9
Q ss_pred CchHHHHHhhhhhcCCCCCCceEEeeccCCCCCCHHHHHHHHHH-cCccceecC--Ccccccchhh-hhhhhhcCCch--
Q 004491 541 DANAVVLEMANEVLPVVKEVPVLAGVCGTDPFRRVDYFLKQLES-IGFFGVQNF--PTVGLFDGNF-RQNLEETGMGY-- 614 (749)
Q Consensus 541 daN~iv~e~~~eilp~v~~tPViaGv~atDP~~~~~~~l~~lk~-~Gf~GV~Nf--PTvgliDG~f-R~~LEe~G~gy-- 614 (749)
.+++++..+..+.... +..+..+||. ||.++...-+.++. .=.-|=||. =.-|-+-|.. -+.|.+.|..|
T Consensus 18 ~~~~~~~~~~~~~~~~--~~~~~v~I~p--p~~~L~~~~~~~~~g~i~~gAQn~~~~~~GA~TGeiS~~mL~d~G~~~vi 93 (251)
T COG0149 18 EAKALVEALAAELVAK--EDDVEVAIAP--PFTDLRRVAELVEIGNIKVGAQNVDPEDSGAFTGEISAEMLKDLGAKYVL 93 (251)
T ss_pred HHHHHHHHHhhccccc--ccceeEEEeC--CHHHHHHHHHHhccCCceEEeccCCcccCCCccCcCCHHHHHHcCCCEEE
Confidence 3555666665543333 2233355655 88888888777774 111345554 2234444443 36788888765
Q ss_pred ---------HHHH-----HHHHHHHHcCCcccccccCHH---------------HHHHHHhccC---cEEEeccCCCccc
Q 004491 615 ---------GLEV-----EMIDKAHKMGLLTTPYAFNEG---------------EAVKMAKAGA---DIIVAHMGLTTSG 662 (749)
Q Consensus 615 ---------~~EV-----emi~~A~~~gl~T~~yvf~~e---------------qa~~Ma~AGa---Diiv~h~GlT~gG 662 (749)
-.|. .-++.|.+.||-.+-=|=+.. ....+..-+. ++|-.-.=|-
T Consensus 94 iGHSERR~~~~E~d~~i~~K~~aa~~~Gl~pIlCvGEtl~~reag~t~~v~~~Ql~~~l~~l~~~~~~vIAYEPvWA--- 170 (251)
T COG0149 94 IGHSERRLYFGETDELIAKKVKAAKEAGLTPILCVGETLEEREAGKTLEVLKRQLAAALAALSPEANIVIAYEPVWA--- 170 (251)
T ss_pred ECccccccccccchHHHHHHHHHHHHCCCeEEEEcCCCHHHHhccChHHHHHHHHHHHHhhcCcccCeEEEECCHHH---
Confidence 3455 467889999998665444444 3344555555 5555555554
Q ss_pred ccccccccCHHHHHHHHHHHHHHHHHhCC--CeEEEEccCCCCCHHHHHHHHhhCCCccEE-ecCccccc
Q 004491 663 SIGAKTALSLDESVDRVQAIADAAHRINP--DAIVLCHGGPISSPSEAEFILKRTKGVHGF-YGASSMER 729 (749)
Q Consensus 663 ~~Ga~~~~sl~~~~~~~~~i~~aa~~~~p--dii~l~hGGPi~~p~d~~~~l~~~~~~~Gf-~g~Ss~ER 729 (749)
||..+..|-+++-+....|.....+... +-+.+.|||-|+.-++.+++. . +++||+ +|+.|++-
T Consensus 171 -IGTG~~at~~~a~~v~~~Ir~~~~~~~~~~~~v~IlYGGSV~~~N~~e~~~-~-~~idG~LVGgAslka 237 (251)
T COG0149 171 -IGTGKSASPADAEEVHAFIRAVLAELFGAEEKVRILYGGSVKPGNAAELAA-Q-PDIDGALVGGASLKA 237 (251)
T ss_pred -hcCCCCCCHHHHHHHHHHHHHHHHHhcCCCCCeEEEEeCCcChhHHHHHhc-C-CCCCeEEEcceeecc
Confidence 5566677877776666666555554321 345555788887777777765 4 688986 56667763
No 401
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=66.62 E-value=35 Score=39.23 Aligned_cols=67 Identities=25% Similarity=0.495 Sum_probs=46.2
Q ss_pred cCHHHHHHHHhccCcEEEeccCCCcccccccccccCHHHHHHHHHHHHHHHHHhCCCeEEEEccCCCCCHHHHHHHHhhC
Q 004491 636 FNEGEAVKMAKAGADIIVAHMGLTTSGSIGAKTALSLDESVDRVQAIADAAHRINPDAIVLCHGGPISSPSEAEFILKRT 715 (749)
Q Consensus 636 f~~eqa~~Ma~AGaDiiv~h~GlT~gG~~Ga~~~~sl~~~~~~~~~i~~aa~~~~pdii~l~hGGPi~~p~d~~~~l~~~ 715 (749)
.+.+.++++.+||+|+|++.+- .| .+ +...+.+++| ++.-|++.+++ |-+.+++++++.++.
T Consensus 224 ~~~~r~~~L~~aG~d~I~vd~a--~g--------~~-~~~~~~i~~i----~~~~~~~~vi~--G~v~t~~~a~~l~~a- 285 (450)
T TIGR01302 224 FDKERAEALVKAGVDVIVIDSS--HG--------HS-IYVIDSIKEI----KKTYPDLDIIA--GNVATAEQAKALIDA- 285 (450)
T ss_pred hHHHHHHHHHHhCCCEEEEECC--CC--------cH-hHHHHHHHHH----HHhCCCCCEEE--EeCCCHHHHHHHHHh-
Confidence 4468999999999999997542 11 11 1233333333 33447888776 899999999999954
Q ss_pred CCccEE
Q 004491 716 KGVHGF 721 (749)
Q Consensus 716 ~~~~Gf 721 (749)
++++.
T Consensus 286 -Gad~i 290 (450)
T TIGR01302 286 -GADGL 290 (450)
T ss_pred -CCCEE
Confidence 67777
No 402
>cd00952 CHBPH_aldolase Trans-o-hydroxybenzylidenepyruvate hydratase-aldolase (HBPHA) and trans-2'-carboxybenzalpyruvate hydratase-aldolase (CBPHA). HBPHA catalyzes HBP to salicyaldehyde and pyruvate. This reaction is part of the degradative pathways for naphthalene and naphthalenesulfonates by bacteria. CBPHA is homologous to HBPHA and catalyzes the cleavage of CBP to 2-carboxylbenzaldehyde and pyruvate during the degradation of phenanthrene. They are member of the DHDPS family of Schiff-base-dependent class I aldolases.
Probab=66.52 E-value=15 Score=40.08 Aligned_cols=100 Identities=16% Similarity=0.160 Sum_probs=65.7
Q ss_pred cccHHHHHHHHHHHhhcCCCeEEeccc-cch-----hhhhhhhcCCcEEEEeccccccccCCccccccccccCchHHHHH
Q 004491 475 LQRTQAILSKLKYQIDKGLPIIGAGAG-TGI-----SAKFEEAGGVDLIVLYNSGRFRMAGRGSLAGLLPFADANAVVLE 548 (749)
Q Consensus 475 ~~~r~~il~~L~~~i~~~~piig~gaG-tGl-----sAk~ae~gGaDli~~ynsGrfR~~G~~SlagllpygdaN~iv~e 548 (749)
.-.|+++++...+..+.+.||+ +|+| .+. -||.|++.|||-+++..-- |.+. .++-+.+
T Consensus 60 ~eEr~~v~~~~~~~~~grvpvi-~Gv~~~~t~~ai~~a~~A~~~Gad~vlv~~P~------------y~~~--~~~~l~~ 124 (309)
T cd00952 60 WEEKQAFVATVVETVAGRVPVF-VGATTLNTRDTIARTRALLDLGADGTMLGRPM------------WLPL--DVDTAVQ 124 (309)
T ss_pred HHHHHHHHHHHHHHhCCCCCEE-EEeccCCHHHHHHHHHHHHHhCCCEEEECCCc------------CCCC--CHHHHHH
Confidence 3458889999999988778877 3333 233 4788999999999876431 3333 4688888
Q ss_pred hhhhhcCCCCCCceEEe----eccCCCCCCHHHHHHHHHHc-Cccceec
Q 004491 549 MANEVLPVVKEVPVLAG----VCGTDPFRRVDYFLKQLESI-GFFGVQN 592 (749)
Q Consensus 549 ~~~eilp~v~~tPViaG----v~atDP~~~~~~~l~~lk~~-Gf~GV~N 592 (749)
.-++|...+.++||+.= ..+.| --..++++|.+. ++.||-.
T Consensus 125 yf~~va~a~~~lPv~iYn~P~~tg~~---l~~~~l~~L~~~pnivgiKd 170 (309)
T cd00952 125 FYRDVAEAVPEMAIAIYANPEAFKFD---FPRAAWAELAQIPQVVAAKY 170 (309)
T ss_pred HHHHHHHhCCCCcEEEEcCchhcCCC---CCHHHHHHHhcCCCEEEEEe
Confidence 88888887756887641 11121 125567777542 5566554
No 403
>PF02548 Pantoate_transf: Ketopantoate hydroxymethyltransferase; InterPro: IPR003700 The panB gene from Escherichia coli encodes the first enzyme of the pantothenate biosynthesis pathway, ketopantoate hydroxymethyltransferase (KPHMT) 2.1.2.11 from EC. Fungal ketopantoate hydroxymethyltransferase is essential for the biosynthesis of coenzyme A, while the pathway intermediate 4'-phosphopantetheine is required for penicillin production [].; GO: 0003864 3-methyl-2-oxobutanoate hydroxymethyltransferase activity, 0015940 pantothenate biosynthetic process; PDB: 3VAV_G 1M3U_A 3EZ4_J 1O68_C 1O66_A 1OY0_D.
Probab=66.47 E-value=7.2 Score=42.16 Aligned_cols=77 Identities=25% Similarity=0.230 Sum_probs=47.0
Q ss_pred HHHHHHHHHhhcCCCeEEeccccchhhhhhhhcCCcEEEEeccccccccCCccccccccccCchHHHHHhh----hhhcC
Q 004491 480 AILSKLKYQIDKGLPIIGAGAGTGISAKFEEAGGVDLIVLYNSGRFRMAGRGSLAGLLPFADANAVVLEMA----NEVLP 555 (749)
Q Consensus 480 ~il~~L~~~i~~~~piig~gaGtGlsAk~ae~gGaDli~~ynsGrfR~~G~~SlagllpygdaN~iv~e~~----~eilp 555 (749)
--+..|+++-++|+||...-+=--.+|+.+++.|+|+|++=.|--- -.|-|.|.+.+.+|.- +-|--
T Consensus 3 ~t~~~l~~~k~~g~ki~~lTaYD~~~A~~~d~agvD~iLVGDSlgm---------v~~G~~sT~~vtld~mi~h~~aV~R 73 (261)
T PF02548_consen 3 VTVSDLRKMKQKGEKIVMLTAYDYPSARIADEAGVDIILVGDSLGM---------VVLGYDSTLPVTLDEMIYHTKAVRR 73 (261)
T ss_dssp --HHHHHHHHHHT--EEEEE--SHHHHHHHHHTT-SEEEE-TTHHH---------HTT--SSSTT--HHHHHHHHHHHHH
T ss_pred ccHHHHHHHHhCCCcEEEEecccHHHHHHHHHcCCCEEEeCCcHHH---------heeCCCCCcCcCHHHHHHHHHHHHh
Confidence 3467888888999999999999999999999999999996444322 3456888888888764 22333
Q ss_pred CCCCCceEEe
Q 004491 556 VVKEVPVLAG 565 (749)
Q Consensus 556 ~v~~tPViaG 565 (749)
-.++..|++-
T Consensus 74 ga~~~~vv~D 83 (261)
T PF02548_consen 74 GAPNAFVVAD 83 (261)
T ss_dssp H-TSSEEEEE
T ss_pred cCCCceEEec
Confidence 3444455554
No 404
>PRK13397 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=66.38 E-value=65 Score=34.79 Aligned_cols=126 Identities=17% Similarity=0.343 Sum_probs=70.6
Q ss_pred ceEEeeccCCCCCCHHHHHHHHHHcCccceecCCcccccchhhhhhh-hhcCCchHHHHHH-HHHHHHcCCcccccccCH
Q 004491 561 PVLAGVCGTDPFRRVDYFLKQLESIGFFGVQNFPTVGLFDGNFRQNL-EETGMGYGLEVEM-IDKAHKMGLLTTPYAFNE 638 (749)
Q Consensus 561 PViaGv~atDP~~~~~~~l~~lk~~Gf~GV~NfPTvgliDG~fR~~L-Ee~G~gy~~EVem-i~~A~~~gl~T~~yvf~~ 638 (749)
-+|||=|.-+-.-.+-+--+++|+.|. +|=-=|.+| =|... .=.|+|-+ .++. .+.+++.|+..+.=+|++
T Consensus 17 ~~iaGPC~vEs~e~~~~~a~~~~~~g~----~~~r~g~~k--pRts~~sf~G~G~~-gl~~L~~~~~~~Gl~~~Tev~d~ 89 (250)
T PRK13397 17 NFIVGPCSIESYDHIRLAASSAKKLGY----NYFRGGAYK--PRTSAASFQGLGLQ-GIRYLHEVCQEFGLLSVSEIMSE 89 (250)
T ss_pred cEEeccCccCCHHHHHHHHHHHHHcCC----CEEEecccC--CCCCCcccCCCCHH-HHHHHHHHHHHcCCCEEEeeCCH
Confidence 356666666655555555556666653 221222222 01111 22356654 4444 455678899999999999
Q ss_pred HHHHHHHhccCcEEEeccCCCc-----------ccccccccc--cCHHHHHHHHHHHHHHHHHhCCCeEEEEc
Q 004491 639 GEAVKMAKAGADIIVAHMGLTT-----------SGSIGAKTA--LSLDESVDRVQAIADAAHRINPDAIVLCH 698 (749)
Q Consensus 639 eqa~~Ma~AGaDiiv~h~GlT~-----------gG~~Ga~~~--~sl~~~~~~~~~i~~aa~~~~pdii~l~h 698 (749)
+|+..+++ .+|++=+=-+..+ |--+-.|+. .|++|-...++.|.+.. |++ |+|||
T Consensus 90 ~~v~~~~e-~vdilqIgs~~~~n~~LL~~va~tgkPVilk~G~~~t~~e~~~A~e~i~~~G---n~~-i~L~e 157 (250)
T PRK13397 90 RQLEEAYD-YLDVIQVGARNMQNFEFLKTLSHIDKPILFKRGLMATIEEYLGALSYLQDTG---KSN-IILCE 157 (250)
T ss_pred HHHHHHHh-cCCEEEECcccccCHHHHHHHHccCCeEEEeCCCCCCHHHHHHHHHHHHHcC---CCe-EEEEc
Confidence 99999999 6999866433322 222223333 45666555555553221 333 66666
No 405
>TIGR00674 dapA dihydrodipicolinate synthase. Dihydrodipicolinate synthase is a homotetrameric enzyme of lysine biosynthesis. E. coli has several paralogs closely related to dihydrodipicoline synthase (DapA), as well as the more distant N-acetylneuraminate lyase. In Pyrococcus horikoshii, the bidirectional best hit with E. coli is to an uncharacterized paralog of DapA, not DapA itself, and it is omitted from the seed. The putative members from the Chlamydias (pathogens with a parasitic metabolism) are easily the most divergent members of the multiple alignment.
Probab=66.37 E-value=16 Score=38.95 Aligned_cols=91 Identities=15% Similarity=0.240 Sum_probs=60.9
Q ss_pred cccHHHHHHHHHHHhhcCCCeEEecccc-ch-----hhhhhhhcCCcEEEEeccccccccCCccccccccccCchHHHHH
Q 004491 475 LQRTQAILSKLKYQIDKGLPIIGAGAGT-GI-----SAKFEEAGGVDLIVLYNSGRFRMAGRGSLAGLLPFADANAVVLE 548 (749)
Q Consensus 475 ~~~r~~il~~L~~~i~~~~piig~gaGt-Gl-----sAk~ae~gGaDli~~ynsGrfR~~G~~SlagllpygdaN~iv~e 548 (749)
.-.|+++++...+.++.+.||+. |+|+ .. -||.|++.|||-|++..-= |.+ -+++-+.+
T Consensus 50 ~~Er~~~~~~~~~~~~~~~~vi~-gv~~~s~~~~i~~a~~a~~~Gad~v~v~pP~------------y~~--~~~~~i~~ 114 (285)
T TIGR00674 50 HEEHKKVIEFVVDLVNGRVPVIA-GTGSNATEEAISLTKFAEDVGADGFLVVTPY------------YNK--PTQEGLYQ 114 (285)
T ss_pred HHHHHHHHHHHHHHhCCCCeEEE-eCCCccHHHHHHHHHHHHHcCCCEEEEcCCc------------CCC--CCHHHHHH
Confidence 34588999999999887788774 3332 22 4788999999999974321 222 24677888
Q ss_pred hhhhhcCCCCCCceEEeeccCCCC----CCHHHHHHHHHH
Q 004491 549 MANEVLPVVKEVPVLAGVCGTDPF----RRVDYFLKQLES 584 (749)
Q Consensus 549 ~~~eilp~v~~tPViaGv~atDP~----~~~~~~l~~lk~ 584 (749)
+-++|...+ ++||+.= .-|. .--..++++|.+
T Consensus 115 ~~~~i~~~~-~~pi~lY---n~P~~tg~~l~~~~l~~L~~ 150 (285)
T TIGR00674 115 HFKAIAEEV-DLPIILY---NVPSRTGVSLYPETVKRLAE 150 (285)
T ss_pred HHHHHHhcC-CCCEEEE---ECcHHhcCCCCHHHHHHHHc
Confidence 888888887 6898743 1232 112457777754
No 406
>PRK05096 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=66.06 E-value=29 Score=39.05 Aligned_cols=87 Identities=23% Similarity=0.317 Sum_probs=56.0
Q ss_pred HHHHHHHHHcC---CcccccccCHHHHHHHHhccCcEEEeccC----CCcccccccccccCHHHHHHHHHHHHHHHHHhC
Q 004491 618 VEMIDKAHKMG---LLTTPYAFNEGEAVKMAKAGADIIVAHMG----LTTSGSIGAKTALSLDESVDRVQAIADAAHRIN 690 (749)
Q Consensus 618 Vemi~~A~~~g---l~T~~yvf~~eqa~~Ma~AGaDiiv~h~G----lT~gG~~Ga~~~~sl~~~~~~~~~i~~aa~~~~ 690 (749)
++||+.-++.- ..-..-|-+.|.|+.+.+||||++-+-+| .||.-..|.... =+..+.+.+++|+ .
T Consensus 139 i~~ik~ik~~~P~~~vIaGNV~T~e~a~~Li~aGAD~vKVGIGpGSiCtTr~vtGvG~P-----QltAV~~~a~~a~--~ 211 (346)
T PRK05096 139 VQFVAKAREAWPDKTICAGNVVTGEMVEELILSGADIVKVGIGPGSVCTTRVKTGVGYP-----QLSAVIECADAAH--G 211 (346)
T ss_pred HHHHHHHHHhCCCCcEEEecccCHHHHHHHHHcCCCEEEEcccCCccccCccccccChh-----HHHHHHHHHHHHH--H
Confidence 46777777641 22356799999999999999999998888 555544444321 1122233334444 3
Q ss_pred CCeEEEEccCCCCCHHHHHHHH
Q 004491 691 PDAIVLCHGGPISSPSEAEFIL 712 (749)
Q Consensus 691 pdii~l~hGGPi~~p~d~~~~l 712 (749)
.++-|+..|| |..+-|+-.-|
T Consensus 212 ~gvpiIADGG-i~~sGDI~KAl 232 (346)
T PRK05096 212 LGGQIVSDGG-CTVPGDVAKAF 232 (346)
T ss_pred cCCCEEecCC-cccccHHHHHH
Confidence 4556777776 77888877665
No 407
>PRK08072 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=66.01 E-value=53 Score=35.79 Aligned_cols=192 Identities=16% Similarity=0.076 Sum_probs=104.9
Q ss_pred eccccchhhhhhhhcCCc--EEEEeccccccccCCccccccccccCchHHHH------H----------hhhhhcCCCCC
Q 004491 498 AGAGTGISAKFEEAGGVD--LIVLYNSGRFRMAGRGSLAGLLPFADANAVVL------E----------MANEVLPVVKE 559 (749)
Q Consensus 498 ~gaGtGlsAk~ae~gGaD--li~~ynsGrfR~~G~~SlagllpygdaN~iv~------e----------~~~eilp~v~~ 559 (749)
+-+|+....+..+.-|.. +-.....|.+=..|---+. -.|++..+.. . +.++..-.+++
T Consensus 46 v~~G~~~a~~i~~~~~~~~~v~~~~~dG~~v~~g~~i~~---~~G~~~~ll~~er~~ln~l~~~sGIAT~t~~~v~~~~~ 122 (277)
T PRK08072 46 VFAGRLVIEEGYKLLDERIEVELHKKDGDLVKKGEIIAT---VQGPVASLLTGERVILNLIQRMSGIATMTRKAVLALDD 122 (277)
T ss_pred EEECHHHHHHHHHHcCCceEEEEEeCCCCEEcCCCEEEE---EEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 446777777777766644 5555566665544432111 1233333321 0 12333333344
Q ss_pred Cc-eEEeeccCCCCCCHHHHHHHHHHcCccceec-----CCcccccchhhhhhhhhcCCchHHHHHHHHHHHHcCCcccc
Q 004491 560 VP-VLAGVCGTDPFRRVDYFLKQLESIGFFGVQN-----FPTVGLFDGNFRQNLEETGMGYGLEVEMIDKAHKMGLLTTP 633 (749)
Q Consensus 560 tP-ViaGv~atDP~~~~~~~l~~lk~~Gf~GV~N-----fPTvgliDG~fR~~LEe~G~gy~~EVemi~~A~~~gl~T~~ 633 (749)
.. .|++---|=|... .|-+.--..| |=.| +.+|=+.|-+++- .| |...-++.+|+-...++.---
T Consensus 123 ~~~~i~~TRKt~Pg~R--~~~k~Av~~G--Gg~~HR~~L~d~vlikdnHi~~----~g-~~~~~v~~aR~~~~~~~~Igv 193 (277)
T PRK08072 123 SHIRICDTRKTTPGLR--MFDKYAVVCG--GGFNHRFGLYDGVMIKDNHIAF----CG-SITKAVTSVREKLGHMVKIEV 193 (277)
T ss_pred CCeEEEecCCCCcchh--HHHHHHHHhc--CCcccCCCCCceEEEchhHHHh----hC-CHHHHHHHHHHhCCCCCEEEE
Confidence 43 3554444456544 3333333333 4444 4555555554432 23 366656555554332443223
Q ss_pred cccCHHHHHHHHhccCcEEEeccCCCcccccccccccCHHHHHHHHHHHHHHHHHhCCCeEEEEccCCCCCHHHHHHHHh
Q 004491 634 YAFNEGEAVKMAKAGADIIVAHMGLTTSGSIGAKTALSLDESVDRVQAIADAAHRINPDAIVLCHGGPISSPSEAEFILK 713 (749)
Q Consensus 634 yvf~~eqa~~Ma~AGaDiiv~h~GlT~gG~~Ga~~~~sl~~~~~~~~~i~~aa~~~~pdii~l~hGGPi~~p~d~~~~l~ 713 (749)
=|.|.||+++..++|||+|..- ..++++-.+ ++...++.+.+.+-|| -+++.+..+.+
T Consensus 194 sv~tleea~~A~~~gaDyI~lD-------------~~~~e~l~~-------~~~~~~~~i~i~AiGG--It~~ni~~~a~ 251 (277)
T PRK08072 194 ETETEEQVREAVAAGADIIMFD-------------NRTPDEIRE-------FVKLVPSAIVTEASGG--ITLENLPAYGG 251 (277)
T ss_pred EeCCHHHHHHHHHcCCCEEEEC-------------CCCHHHHHH-------HHHhcCCCceEEEECC--CCHHHHHHHHH
Confidence 3679999999999999999761 255544322 2233345566677777 49999998884
Q ss_pred hCCCccEEecCc
Q 004491 714 RTKGVHGFYGAS 725 (749)
Q Consensus 714 ~~~~~~Gf~g~S 725 (749)
++++|.--++
T Consensus 252 --~Gvd~IAvg~ 261 (277)
T PRK08072 252 --TGVDYISLGF 261 (277)
T ss_pred --cCCCEEEECh
Confidence 5788887665
No 408
>TIGR01163 rpe ribulose-phosphate 3-epimerase. This family consists of Ribulose-phosphate 3-epimerase, also known as pentose-5-phosphate 3-epimerase (PPE). PPE converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. It has been found in a wide range of bacteria, archebacteria, fungi and plants.
Probab=65.77 E-value=54 Score=32.68 Aligned_cols=122 Identities=22% Similarity=0.281 Sum_probs=66.1
Q ss_pred eeccCCCCCCHHHHHHHHHHcCccceecCCcccccchhhhhhhhhcCCchHHHHHHHHHHHHcCCcccccccCH-HHHHH
Q 004491 565 GVCGTDPFRRVDYFLKQLESIGFFGVQNFPTVGLFDGNFRQNLEETGMGYGLEVEMIDKAHKMGLLTTPYAFNE-GEAVK 643 (749)
Q Consensus 565 Gv~atDP~~~~~~~l~~lk~~Gf~GV~NfPTvgliDG~fR~~LEe~G~gy~~EVemi~~A~~~gl~T~~yvf~~-eqa~~ 643 (749)
++...|| ....+.++.+.+.|..-|- +++.||.|=+++. .|+ ..++-|+..-+.-+..--++++. +.++.
T Consensus 4 ~~~~~~~-~~~~~~~~~~~~~g~d~i~----~~~~Dg~~~~~~~---~~~-~~v~~i~~~~~~~v~v~lm~~~~~~~~~~ 74 (210)
T TIGR01163 4 SILSADF-ARLGEEVKAVEEAGADWIH----VDVMDGHFVPNLT---FGP-PVLEALRKYTDLPIDVHLMVENPDRYIED 74 (210)
T ss_pred hhhcCCH-HHHHHHHHHHHHcCCCEEE----EcCCCCCCCCCcc---cCH-HHHHHHHhcCCCcEEEEeeeCCHHHHHHH
Confidence 3445555 3445667777777744321 1378898887665 232 23444442111111111334444 55666
Q ss_pred HHhccCcEEEeccCCCcccccccccccCHHHHHHHHHHHHHHHHHhCCCeEEEEccCCCCCHHHHHHHHhh
Q 004491 644 MAKAGADIIVAHMGLTTSGSIGAKTALSLDESVDRVQAIADAAHRINPDAIVLCHGGPISSPSEAEFILKR 714 (749)
Q Consensus 644 Ma~AGaDiiv~h~GlT~gG~~Ga~~~~sl~~~~~~~~~i~~aa~~~~pdii~l~hGGPi~~p~d~~~~l~~ 714 (749)
+.++|+|.|++|.+-+ ++. .+..+.+++.+.++++.. .|-+..+.++.+...
T Consensus 75 ~~~~gadgv~vh~~~~-------------~~~----~~~~~~~~~~g~~~~~~~--~~~t~~e~~~~~~~~ 126 (210)
T TIGR01163 75 FAEAGADIITVHPEAS-------------EHI----HRLLQLIKDLGAKAGIVL--NPATPLEFLEYVLPD 126 (210)
T ss_pred HHHcCCCEEEEccCCc-------------hhH----HHHHHHHHHcCCcEEEEE--CCCCCHHHHHHHHhh
Confidence 7799999999996421 111 233366677777777763 243445566665433
No 409
>TIGR03572 WbuZ glycosyl amidation-associated protein WbuZ. This clade of sequences is highly similar to the HisF protein, but generally represents the second HisF homolog in the genome where the other is an authentic HisF observed in the context of a complete histidine biosynthesis operon. The similarity between these WbuZ sequences and true HisFs is such that often the closest match by BLAST of a WbuZ is a HisF. Only by making a multiple sequence alignment is the homology relationship among the WbuZ sequences made apparent. WbuZ genes are invariably observed in the presence of a homolog of the HisH protein (designated WbuY) and a proposed N-acetyl sugar amidotransferase designated in WbuX in E. coli, IfnA in P. aeriginosa and PseA in C. jejuni. Similarly, this trio of genes is invariably found in the context of saccharide biosynthesis loci. It has been shown that the WbuYZ homologs are not essential components of the activity expressed by WbuX, leading to the proposal that these to pr
Probab=65.72 E-value=82 Score=32.43 Aligned_cols=142 Identities=20% Similarity=0.190 Sum_probs=80.6
Q ss_pred HHHHHHHHHHhhcCCC-eEEeccccchhhhhhhhcCCcEEEEeccccccccCCccccccccccCchHHHHHhhhhhcCCC
Q 004491 479 QAILSKLKYQIDKGLP-IIGAGAGTGISAKFEEAGGVDLIVLYNSGRFRMAGRGSLAGLLPFADANAVVLEMANEVLPVV 557 (749)
Q Consensus 479 ~~il~~L~~~i~~~~p-iig~gaGtGlsAk~ae~gGaDli~~ynsGrfR~~G~~SlagllpygdaN~iv~e~~~eilp~v 557 (749)
.++++++++.. +.| ++|.|.-+=-.++.....|+|.+ ++|+.-++- - +.+.++.+.. +.
T Consensus 63 ~~~~~~i~~~~--~~pv~~~ggi~~~~d~~~~~~~G~~~v-ilg~~~l~~--------------~-~~~~~~~~~~-~~- 122 (232)
T TIGR03572 63 FELISNLAEEC--FMPLTVGGGIRSLEDAKKLLSLGADKV-SINTAALEN--------------P-DLIEEAARRF-GS- 122 (232)
T ss_pred HHHHHHHHHhC--CCCEEEECCCCCHHHHHHHHHcCCCEE-EEChhHhcC--------------H-HHHHHHHHHc-CC-
Confidence 45777777765 456 45566665556666667899987 456555432 1 3344443332 11
Q ss_pred CCCceEEeeccCCC-----------------CCCHHHHHHHHHHcCccceecCCcccccchhhhhhhhhcCCchHHHHHH
Q 004491 558 KEVPVLAGVCGTDP-----------------FRRVDYFLKQLESIGFFGVQNFPTVGLFDGNFRQNLEETGMGYGLEVEM 620 (749)
Q Consensus 558 ~~tPViaGv~atDP-----------------~~~~~~~l~~lk~~Gf~GV~NfPTvgliDG~fR~~LEe~G~gy~~EVem 620 (749)
+ -++..+-.-+. -.+...+.+++.+.|...|.=-. + .+ +.+.-||+ .++
T Consensus 123 -~-~i~vsld~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~G~d~i~i~~----i---~~---~g~~~g~~--~~~ 188 (232)
T TIGR03572 123 -Q-CVVVSIDVKKELDGSDYKVYSDNGRRATGRDPVEWAREAEQLGAGEILLNS----I---DR---DGTMKGYD--LEL 188 (232)
T ss_pred -c-eEEEEEEeccCCCCCcEEEEECCCcccCCCCHHHHHHHHHHcCCCEEEEeC----C---Cc---cCCcCCCC--HHH
Confidence 0 02222221110 12356889999999987665211 1 11 11233444 444
Q ss_pred HHHHHH---cCCcccccccCHHHHHH-HHhccCcEEEe
Q 004491 621 IDKAHK---MGLLTTPYAFNEGEAVK-MAKAGADIIVA 654 (749)
Q Consensus 621 i~~A~~---~gl~T~~yvf~~eqa~~-Ma~AGaDiiv~ 654 (749)
+++.++ .-+....=+.|.+++++ +.+.|||-+++
T Consensus 189 ~~~i~~~~~ipvia~GGi~s~~di~~~l~~~gadgV~v 226 (232)
T TIGR03572 189 IKTVSDAVSIPVIALGGAGSLDDLVEVALEAGASAVAA 226 (232)
T ss_pred HHHHHhhCCCCEEEECCCCCHHHHHHHHHHcCCCEEEE
Confidence 555543 45666667889999999 67899998875
No 410
>PRK09426 methylmalonyl-CoA mutase; Reviewed
Probab=65.71 E-value=41 Score=41.21 Aligned_cols=85 Identities=18% Similarity=0.306 Sum_probs=56.3
Q ss_pred CHHHHHHH-HhccCcEEEeccCCCcccccccccccCHHHHHHHHHHHHHHHHHhC-CCeEEEEccCCCCCHHHHHHHHhh
Q 004491 637 NEGEAVKM-AKAGADIIVAHMGLTTSGSIGAKTALSLDESVDRVQAIADAAHRIN-PDAIVLCHGGPISSPSEAEFILKR 714 (749)
Q Consensus 637 ~~eqa~~M-a~AGaDiiv~h~GlT~gG~~Ga~~~~sl~~~~~~~~~i~~aa~~~~-pdii~l~hGGPi~~p~d~~~~l~~ 714 (749)
++|++.+. .+.|+||+|+= + +.....+.+.+++++.++.+ +|+.+++.|.|. |+|.+. |+.
T Consensus 621 s~e~~v~aa~~~~a~ivvlc-s-------------~d~~~~e~~~~l~~~Lk~~G~~~v~vl~GG~~~--~~~~~~-l~~ 683 (714)
T PRK09426 621 TPEEAARQAVENDVHVVGVS-S-------------LAAGHKTLVPALIEALKKLGREDIMVVVGGVIP--PQDYDF-LYE 683 (714)
T ss_pred CHHHHHHHHHHcCCCEEEEe-c-------------cchhhHHHHHHHHHHHHhcCCCCcEEEEeCCCC--hhhHHH-HHh
Confidence 45565555 57899999872 1 22345556677778888875 468888877652 566644 556
Q ss_pred CCCccEEecCcccccchHHHHHHHHHHhh
Q 004491 715 TKGVHGFYGASSMERLPVEQAITSTMRQY 743 (749)
Q Consensus 715 ~~~~~Gf~g~Ss~ERlP~E~ai~~~~~~F 743 (749)
.++++||..-+ +++..+....+..
T Consensus 684 -aGvD~~i~~g~----d~~~~L~~l~~~l 707 (714)
T PRK09426 684 -AGVAAIFGPGT----VIADAAIDLLELL 707 (714)
T ss_pred -CCCCEEECCCC----CHHHHHHHHHHHH
Confidence 78999998765 6666665554443
No 411
>cd00954 NAL N-Acetylneuraminic acid aldolase, also called N-acetylneuraminate lyase (NAL), which catalyses the reversible aldol reaction of N-acetyl-D-mannosamine and pyruvate to give N-acetyl-D-neuraminic acid (D-sialic acid). It has a widespread application as biocatalyst for the synthesis of sialic acid and its derivatives. This enzyme has been shown to be quite specific for pyruvate as the donor, but flexible to a variety of D- and, to some extent, L-hexoses and pentoses as acceptor substrates. NAL is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases.
Probab=65.71 E-value=16 Score=39.15 Aligned_cols=93 Identities=13% Similarity=0.049 Sum_probs=60.5
Q ss_pred cccHHHHHHHHHHHhhcCCCeEEeccccch------hhhhhhhcCCcEEEEeccccccccCCccccccccccCchHHHHH
Q 004491 475 LQRTQAILSKLKYQIDKGLPIIGAGAGTGI------SAKFEEAGGVDLIVLYNSGRFRMAGRGSLAGLLPFADANAVVLE 548 (749)
Q Consensus 475 ~~~r~~il~~L~~~i~~~~piig~gaGtGl------sAk~ae~gGaDli~~ynsGrfR~~G~~SlagllpygdaN~iv~e 548 (749)
.-.|+++++...+..+.+.||+. |+|+.- -||.|++.|||-+++..-- |++ -+++-+.+
T Consensus 53 ~~Er~~~~~~~~~~~~~~~~via-gv~~~~~~~ai~~a~~a~~~Gad~v~~~~P~------------y~~--~~~~~i~~ 117 (288)
T cd00954 53 VEERKQIAEIVAEAAKGKVTLIA-HVGSLNLKESQELAKHAEELGYDAISAITPF------------YYK--FSFEEIKD 117 (288)
T ss_pred HHHHHHHHHHHHHHhCCCCeEEe-ccCCCCHHHHHHHHHHHHHcCCCEEEEeCCC------------CCC--CCHHHHHH
Confidence 34588888888888777667765 344332 3689999999999986432 222 24567788
Q ss_pred hhhhhcCCCCCCceEEeeccC---CCCCCHHHHHHHHHH
Q 004491 549 MANEVLPVVKEVPVLAGVCGT---DPFRRVDYFLKQLES 584 (749)
Q Consensus 549 ~~~eilp~v~~tPViaGv~at---DP~~~~~~~l~~lk~ 584 (749)
+-++|...+++.||+. -+-- --..+ ..++.+|.+
T Consensus 118 ~~~~v~~a~~~lpi~i-Yn~P~~tg~~l~-~~~~~~L~~ 154 (288)
T cd00954 118 YYREIIAAAASLPMII-YHIPALTGVNLT-LEQFLELFE 154 (288)
T ss_pred HHHHHHHhcCCCCEEE-EeCccccCCCCC-HHHHHHHhc
Confidence 8888888876789876 2211 11122 356667764
No 412
>cd00465 URO-D_CIMS_like The URO-D_CIMS_like protein superfamily includes bacterial and eukaryotic uroporphyrinogen decarboxylases (URO-D), coenzyme M methyltransferases and other putative bacterial methyltransferases, as well as cobalamine (B12) independent methionine synthases. Despite their sequence similarities, members of this family have clearly different functions. Uroporphyrinogen decarboxylase (URO-D) decarboxylates the four acetate side chains of uroporphyrinogen III (uro-III) to create coproporphyrinogen III, an important branching point of the tetrapyrrole biosynthetic pathway. The methyltransferases represented here are important for ability of methanogenic organisms to use other compounds than carbon dioxide for reduction to methane, and methionine synthases transfer a methyl group from a folate cofactor to L-homocysteine in a reaction requiring zinc.
Probab=65.34 E-value=50 Score=35.00 Aligned_cols=97 Identities=21% Similarity=0.220 Sum_probs=57.5
Q ss_pred cCCcccccchhhhhhhhhcCCch---------HHHHHHHHHHHHcCCcccccccCHHHHHHHHhccCcEEEeccCCCccc
Q 004491 592 NFPTVGLFDGNFRQNLEETGMGY---------GLEVEMIDKAHKMGLLTTPYAFNEGEAVKMAKAGADIIVAHMGLTTSG 662 (749)
Q Consensus 592 NfPTvgliDG~fR~~LEe~G~gy---------~~EVemi~~A~~~gl~T~~yvf~~eqa~~Ma~AGaDiiv~h~GlT~gG 662 (749)
+.|..+.+-|-|--..--.|..+ +.--+++... | =+..+++++..+||||+|+.+--+-..+
T Consensus 101 ~~~v~~~~~GP~Tla~~l~~~~~~~~~~~~~p~~~~~ll~~i------~---~~~~~~~~~~~eaG~d~i~i~dp~~~~~ 171 (306)
T cd00465 101 EFPTAGAAGGPFTFTHHSMSMGDALMALYERPEAMHELIEYL------T---EFILEYAKTLIEAGAKALQIHEPAFSQI 171 (306)
T ss_pred ccceEeecCCHHHHHHHHHcccHHHHHHHHChHHHHHHHHHH------H---HHHHHHHHHHHHhCCCEEEEeccccccc
Confidence 78888888887665554445444 1112222221 1 1235788899999999999986544333
Q ss_pred c--cccccccCHHH-HHHHHHHHHHHHHHhCCCeEEEEccC
Q 004491 663 S--IGAKTALSLDE-SVDRVQAIADAAHRINPDAIVLCHGG 700 (749)
Q Consensus 663 ~--~Ga~~~~sl~~-~~~~~~~i~~aa~~~~pdii~l~hGG 700 (749)
. ++.+ ..++ +....++|++..+..+..+++.++|+
T Consensus 172 ~~~is~~---~~~e~~~p~~k~i~~~i~~~~~~~~lH~cg~ 209 (306)
T cd00465 172 NSFLGPK---MFKKFALPAYKKVAEYKAAGEVPIVHHSCYD 209 (306)
T ss_pred CCCCCHH---HHHHHHHHHHHHHHHHHhhcCCceEEEECCC
Confidence 1 2211 1222 55677888887766554556666676
No 413
>TIGR00674 dapA dihydrodipicolinate synthase. Dihydrodipicolinate synthase is a homotetrameric enzyme of lysine biosynthesis. E. coli has several paralogs closely related to dihydrodipicoline synthase (DapA), as well as the more distant N-acetylneuraminate lyase. In Pyrococcus horikoshii, the bidirectional best hit with E. coli is to an uncharacterized paralog of DapA, not DapA itself, and it is omitted from the seed. The putative members from the Chlamydias (pathogens with a parasitic metabolism) are easily the most divergent members of the multiple alignment.
Probab=65.30 E-value=89 Score=33.41 Aligned_cols=126 Identities=13% Similarity=0.114 Sum_probs=75.1
Q ss_pred HHHHHHHHHHcCccceecCCcccccchhhhhhhhhcCCchHHHHHHHHHHHHc--C-C--cccccccCHHH----HHHHH
Q 004491 575 VDYFLKQLESIGFFGVQNFPTVGLFDGNFRQNLEETGMGYGLEVEMIDKAHKM--G-L--LTTPYAFNEGE----AVKMA 645 (749)
Q Consensus 575 ~~~~l~~lk~~Gf~GV~NfPTvgliDG~fR~~LEe~G~gy~~EVemi~~A~~~--g-l--~T~~yvf~~eq----a~~Ma 645 (749)
+.++++.+.+.|..||.-.=|.| |-.=|+-+.=.++++.+.+. | + +.-.-..+.+| |+...
T Consensus 21 ~~~~i~~l~~~Gv~Gi~~~GstG----------E~~~Ls~~Er~~~~~~~~~~~~~~~~vi~gv~~~s~~~~i~~a~~a~ 90 (285)
T TIGR00674 21 LEKLIDFQIENGTDAIVVVGTTG----------ESPTLSHEEHKKVIEFVVDLVNGRVPVIAGTGSNATEEAISLTKFAE 90 (285)
T ss_pred HHHHHHHHHHcCCCEEEECccCc----------ccccCCHHHHHHHHHHHHHHhCCCCeEEEeCCCccHHHHHHHHHHHH
Confidence 56778888889999997554544 22334444445556555543 2 2 21122234444 45555
Q ss_pred hccCcEEEeccCCCcccccccccccCHHHHHHHHHHHHHHHHHhCCCeEEEE---ccCCCCCHHHHHHHHhhCCCccEEe
Q 004491 646 KAGADIIVAHMGLTTSGSIGAKTALSLDESVDRVQAIADAAHRINPDAIVLC---HGGPISSPSEAEFILKRTKGVHGFY 722 (749)
Q Consensus 646 ~AGaDiiv~h~GlT~gG~~Ga~~~~sl~~~~~~~~~i~~aa~~~~pdii~l~---hGGPi~~p~d~~~~l~~~~~~~Gf~ 722 (749)
++|||.+.+...... ..|-++-++.-++|.+++ +-.+++.= .-|---+|+.++.+.++ +++.|+=
T Consensus 91 ~~Gad~v~v~pP~y~--------~~~~~~i~~~~~~i~~~~---~~pi~lYn~P~~tg~~l~~~~l~~L~~~-~~v~giK 158 (285)
T TIGR00674 91 DVGADGFLVVTPYYN--------KPTQEGLYQHFKAIAEEV---DLPIILYNVPSRTGVSLYPETVKRLAEE-PNIVAIK 158 (285)
T ss_pred HcCCCEEEEcCCcCC--------CCCHHHHHHHHHHHHhcC---CCCEEEEECcHHhcCCCCHHHHHHHHcC-CCEEEEE
Confidence 789999988776542 235577777888887764 22333221 12322358899999865 7888875
No 414
>PRK08508 biotin synthase; Provisional
Probab=65.26 E-value=66 Score=34.55 Aligned_cols=126 Identities=14% Similarity=0.097 Sum_probs=71.0
Q ss_pred CCHHHHHHHHHH---cCccceecCCcccccchhhhhhhhhcCCchHHHHHHHHHHHHcC--Cc---ccccccCHHHHHHH
Q 004491 573 RRVDYFLKQLES---IGFFGVQNFPTVGLFDGNFRQNLEETGMGYGLEVEMIDKAHKMG--LL---TTPYAFNEGEAVKM 644 (749)
Q Consensus 573 ~~~~~~l~~lk~---~Gf~GV~NfPTvgliDG~fR~~LEe~G~gy~~EVemi~~A~~~g--l~---T~~yvf~~eqa~~M 644 (749)
++.++.++.+++ .|+..+ .+.++.++- .+ ..++.=.|++++.++.+ +- +..+ -+.|+.++|
T Consensus 40 ~s~eeI~~~a~~a~~~g~~~~------~lv~sg~~~--~~--~~~e~~~ei~~~ik~~~p~l~i~~s~G~-~~~e~l~~L 108 (279)
T PRK08508 40 KDIEQIVQEAKMAKANGALGF------CLVTSGRGL--DD--KKLEYVAEAAKAVKKEVPGLHLIACNGT-ASVEQLKEL 108 (279)
T ss_pred CCHHHHHHHHHHHHHCCCCEE------EEEeccCCC--Cc--ccHHHHHHHHHHHHhhCCCcEEEecCCC-CCHHHHHHH
Confidence 577888887765 566543 222211110 11 13455578888888764 31 2233 379999999
Q ss_pred HhccCcEEEeccCCCccccc--ccccccCHHHHHHHHHHHHHHHHHhCCCeEEEEccCCCCCHHHHHHHHhhC
Q 004491 645 AKAGADIIVAHMGLTTSGSI--GAKTALSLDESVDRVQAIADAAHRINPDAIVLCHGGPISSPSEAEFILKRT 715 (749)
Q Consensus 645 a~AGaDiiv~h~GlT~gG~~--Ga~~~~sl~~~~~~~~~i~~aa~~~~pdii~l~hGGPi~~p~d~~~~l~~~ 715 (749)
.+||+|-+-..+. ++-.+ ...+..+.++-.+.++...++--++.-- +++ |...+++|....+...
T Consensus 109 k~aGld~~~~~lE--t~~~~~~~i~~~~~~~~~l~~i~~a~~~Gi~v~sg-~I~---GlGEt~ed~~~~l~~l 175 (279)
T PRK08508 109 KKAGIFSYNHNLE--TSKEFFPKICTTHTWEERFQTCENAKEAGLGLCSG-GIF---GLGESWEDRISFLKSL 175 (279)
T ss_pred HHcCCCEEccccc--chHHHhcCCCCCCCHHHHHHHHHHHHHcCCeecce-eEE---ecCCCHHHHHHHHHHH
Confidence 9999998765433 32212 1223466777776666544443333331 222 3567888877666443
No 415
>TIGR00343 pyridoxal 5'-phosphate synthase, synthase subunit Pdx1. This protein had been believed to be a singlet oxygen resistance protein. Subsequent work showed that it is a protein of pyridoxine (vitamin B6) biosynthesis, and that pyridoxine quenches the highly toxic singlet form of oxygen produced by light in the presence of certain chemicals.
Probab=65.21 E-value=1.1e+02 Score=33.74 Aligned_cols=145 Identities=23% Similarity=0.320 Sum_probs=88.5
Q ss_pred HHHHHHHHHhhcCCCeEEe-ccccchhhhhhhhcCCcEEEEeccccccccCCccccccccccCchHHHHHhhhhhcCCCC
Q 004491 480 AILSKLKYQIDKGLPIIGA-GAGTGISAKFEEAGGVDLIVLYNSGRFRMAGRGSLAGLLPFADANAVVLEMANEVLPVVK 558 (749)
Q Consensus 480 ~il~~L~~~i~~~~piig~-gaGtGlsAk~ae~gGaDli~~ynsGrfR~~G~~SlagllpygdaN~iv~e~~~eilp~v~ 558 (749)
+.++.+++.+ ..||+|- =.|-=--|+.-++.|+|+| =-|-|.|- +.+.+-.. ++= .
T Consensus 57 ~~I~~I~~~V--~iPVig~~kigh~~Ea~~L~~~GvDiI--DeTe~lrP--------------ade~~~~~-K~~---f- 113 (287)
T TIGR00343 57 KMIKEIMDAV--SIPVMAKVRIGHFVEAQILEALGVDYI--DESEVLTP--------------ADWTFHID-KKK---F- 113 (287)
T ss_pred HHHHHHHHhC--CCCEEEEeeccHHHHHHHHHHcCCCEE--EccCCCCc--------------HHHHHHHH-HHH---c-
Confidence 3455566665 8999994 4444346788899999999 36666664 23333222 221 1
Q ss_pred CCceEEeeccCCCCCCHHHHHHHHHHcCcc--------ceecC-Ccc---cccchhhhhh------------hhhcCCch
Q 004491 559 EVPVLAGVCGTDPFRRVDYFLKQLESIGFF--------GVQNF-PTV---GLFDGNFRQN------------LEETGMGY 614 (749)
Q Consensus 559 ~tPViaGv~atDP~~~~~~~l~~lk~~Gf~--------GV~Nf-PTv---gliDG~fR~~------------LEe~G~gy 614 (749)
++|+.||+ +++++=|.+++ .||. |--|. -.| -.+-...|+. =.+.+.+|
T Consensus 114 ~vpfmad~------~~l~EAlrai~-~GadmI~Tt~e~gTg~v~~av~hlr~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 186 (287)
T TIGR00343 114 KVPFVCGA------RDLGEALRRIN-EGAAMIRTKGEAGTGNIVEAVRHMRKINEEIRQIQNMLEEEDLAAVAKELRVPV 186 (287)
T ss_pred CCCEEccC------CCHHHHHHHHH-CCCCEEeccccCCCccHHHHHHHHHHHHHHHHHHhcccchhHHhhhhcccCCCH
Confidence 68999987 47888888874 3443 22220 001 1111112211 12234454
Q ss_pred HHHHHHHHHHHHcCCcccccc-------cCHHHHHHHHhccCcEEEeccCCCc
Q 004491 615 GLEVEMIDKAHKMGLLTTPYA-------FNEGEAVKMAKAGADIIVAHMGLTT 660 (749)
Q Consensus 615 ~~EVemi~~A~~~gl~T~~yv-------f~~eqa~~Ma~AGaDiiv~h~GlT~ 660 (749)
|+|++.++.. .+|-+ +++++|..|.+.|||-+++--++|.
T Consensus 187 ----elLkei~~~~--~iPVV~fAiGGI~TPedAa~~melGAdGVaVGSaI~k 233 (287)
T TIGR00343 187 ----ELLLEVLKLG--KLPVVNFAAGGVATPADAALMMQLGADGVFVGSGIFK 233 (287)
T ss_pred ----HHHHHHHHhC--CCCEEEeccCCCCCHHHHHHHHHcCCCEEEEhHHhhc
Confidence 5677777753 46665 7999999999999999998777664
No 416
>COG1646 Predicted phosphate-binding enzymes, TIM-barrel fold [General function prediction only]
Probab=64.97 E-value=16 Score=39.16 Aligned_cols=56 Identities=27% Similarity=0.355 Sum_probs=46.6
Q ss_pred HHHHhCCCeEEEEccCCCCCHHHHHHHHhhCCCccEEecCcccccchHHHHHHHHHHhhcc
Q 004491 685 AAHRINPDAIVLCHGGPISSPSEAEFILKRTKGVHGFYGASSMERLPVEQAITSTMRQYKS 745 (749)
Q Consensus 685 aa~~~~pdii~l~hGGPi~~p~d~~~~l~~~~~~~Gf~g~Ss~ERlP~E~ai~~~~~~FK~ 745 (749)
+++++.++. .|++||-|.+||.+..+.+. +.|=-+-|.-+|+=| .+..++++.+|+
T Consensus 184 ~v~~v~~~~-~LivGGGIrs~E~A~~~a~a--gAD~IVtG~iiee~~--~~~~~~v~~~k~ 239 (240)
T COG1646 184 MVSRVLSDT-PLIVGGGIRSPEQAREMAEA--GADTIVTGTIIEEDP--DKALETVEAIKS 239 (240)
T ss_pred HHHHhhccc-eEEEcCCcCCHHHHHHHHHc--CCCEEEECceeecCH--HHHHHHHHHhhc
Confidence 345555555 89999999999999999853 568899999999999 777889999986
No 417
>cd03332 LMO_FMN L-Lactate 2-monooxygenase (LMO) FMN-binding domain. LMO is a FMN-containing enzyme that catalyzes the conversion of L-lactate and oxygen to acetate, carbon dioxide, and water. LMO is a member of the family of alpha-hydroxy acid oxidases. It is thought to be a homooctamer with two- and four- fold axes in the center of the octamer.
Probab=64.95 E-value=15 Score=41.78 Aligned_cols=119 Identities=12% Similarity=0.196 Sum_probs=67.3
Q ss_pred CchHHHHHHHHHHHHcCCcccccccCHHHHHHHHhccCcEEEeccCCCcccccccccccCHHHHHHHHHHHHHHHHHhCC
Q 004491 612 MGYGLEVEMIDKAHKMGLLTTPYAFNEGEAVKMAKAGADIIVAHMGLTTSGSIGAKTALSLDESVDRVQAIADAAHRINP 691 (749)
Q Consensus 612 ~gy~~EVemi~~A~~~gl~T~~yvf~~eqa~~Ma~AGaDiiv~h~GlT~gG~~Ga~~~~sl~~~~~~~~~i~~aa~~~~p 691 (749)
+.+ ..++-|+..-+ +=+-+-=|.+.++|+...++|+|.|++- ..||.- -+...+- +..+.+....+..
T Consensus 240 ~tW-~~i~~lr~~~~-~pvivKgV~~~~dA~~a~~~G~d~I~vs---nhGGr~-~d~~~~t------~~~L~ei~~~~~~ 307 (383)
T cd03332 240 LTW-EDLAFLREWTD-LPIVLKGILHPDDARRAVEAGVDGVVVS---NHGGRQ-VDGSIAA------LDALPEIVEAVGD 307 (383)
T ss_pred CCH-HHHHHHHHhcC-CCEEEecCCCHHHHHHHHHCCCCEEEEc---CCCCcC-CCCCcCH------HHHHHHHHHHhcC
Confidence 444 34666665432 2333344689999999999999998874 334432 1223332 2233333344555
Q ss_pred CeEEEEccCCCCCHHHHHHHHhhCCCccEEecCcccc-------cchHHHHHHHHHHhhcc
Q 004491 692 DAIVLCHGGPISSPSEAEFILKRTKGVHGFYGASSME-------RLPVEQAITSTMRQYKS 745 (749)
Q Consensus 692 dii~l~hGGPi~~p~d~~~~l~~~~~~~Gf~g~Ss~E-------RlP~E~ai~~~~~~FK~ 745 (749)
++-+++.|| |.+..|+-.-|.- ++++-.-+..+= .--+|+.|.....+++.
T Consensus 308 ~~~vi~dGG-Ir~G~Dv~KALaL--GA~~v~iGr~~l~~l~~~G~~gv~~~l~~l~~El~~ 365 (383)
T cd03332 308 RLTVLFDSG-VRTGADIMKALAL--GAKAVLIGRPYAYGLALGGEDGVEHVLRNLLAELDL 365 (383)
T ss_pred CCeEEEeCC-cCcHHHHHHHHHc--CCCEEEEcHHHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence 666777766 9999999888844 344443333221 11355555555555543
No 418
>PTZ00411 transaldolase-like protein; Provisional
Probab=64.82 E-value=36 Score=38.12 Aligned_cols=145 Identities=19% Similarity=0.225 Sum_probs=90.8
Q ss_pred chHHHHHhhhhhcCCCCCCceEEeeccCCCC--CCHHHHHHHH-------HHcCccc---eecCCcccccchhhhhhhhh
Q 004491 542 ANAVVLEMANEVLPVVKEVPVLAGVCGTDPF--RRVDYFLKQL-------ESIGFFG---VQNFPTVGLFDGNFRQNLEE 609 (749)
Q Consensus 542 aN~iv~e~~~eilp~v~~tPViaGv~atDP~--~~~~~~l~~l-------k~~Gf~G---V~NfPTvgliDG~fR~~LEe 609 (749)
++.+...++.||++.++ =+|-.=| ||. .+.+..+++- ++.|+.+ +.--|.. +.|
T Consensus 84 ~d~l~v~~g~~i~~~i~-G~VS~EV---d~~ls~d~e~~i~~A~~l~~l~~~~gi~~~rilIKIPaT--~eG-------- 149 (333)
T PTZ00411 84 VDKLTVNFGVEILKIVP-GRVSTEV---DARLSFDKQAMVDKARKIIKMYEEAGISKDRILIKLAST--WEG-------- 149 (333)
T ss_pred HHHHHHHHHHHHHhcCC-CCEEEEE---ccccccCHHHHHHHHHHHHHhhhhhcCCCCcEEEEeCCC--HHH--------
Confidence 34556667788888875 3677666 332 2233333332 3334422 1223422 333
Q ss_pred cCCchHHHHHHHHHHHHcCCcccc-cccCHHHHHHHHhccCcEEEeccCCCccccc---cc-ccccCHHHHHHHHHHHHH
Q 004491 610 TGMGYGLEVEMIDKAHKMGLLTTP-YAFNEGEAVKMAKAGADIIVAHMGLTTSGSI---GA-KTALSLDESVDRVQAIAD 684 (749)
Q Consensus 610 ~G~gy~~EVemi~~A~~~gl~T~~-yvf~~eqa~~Ma~AGaDiiv~h~GlT~gG~~---Ga-~~~~sl~~~~~~~~~i~~ 684 (749)
++.++.-.+.|+-+.. .+|+..||.+-++|||+.|-+.+|.-.-=.. +. .....=+..+..+++|++
T Consensus 150 --------i~Aa~~L~~eGI~~N~TlvFS~~QA~aaaeAGa~~ISPfVGRi~d~~~~~~~~~~~~~~~~~Gv~~v~~i~~ 221 (333)
T PTZ00411 150 --------IQAAKALEKEGIHCNLTLLFSFAQAVACAQAGVTLISPFVGRILDWYKKPEKAESYVGAQDPGVISVTKIYN 221 (333)
T ss_pred --------HHHHHHHHHCCCceeEeEecCHHHHHHHHHcCCCEEEeecchHHHhcccccccccccccCCchHHHHHHHHH
Confidence 6677777788886543 5999999999999999999999996522100 00 001112456778888888
Q ss_pred HHHHhCCCeEEEEccCCCCCHHHHHH
Q 004491 685 AAHRINPDAIVLCHGGPISSPSEAEF 710 (749)
Q Consensus 685 aa~~~~pdii~l~hGGPi~~p~d~~~ 710 (749)
.-++.+.+..|| |.-+.+++++..
T Consensus 222 ~~k~~g~~T~Im--~ASfRn~~qi~~ 245 (333)
T PTZ00411 222 YYKKHGYKTIVM--GASFRNTGEILE 245 (333)
T ss_pred HHHHcCCCeEEE--ecccCCHHHHHH
Confidence 888888888888 566777776655
No 419
>TIGR00683 nanA N-acetylneuraminate lyase. N-acetylneuraminate lyase is also known as N-acetylneuraminic acid aldolase, sialic acid aldolase, or sialate lyase. It is an intracellular enzyme. The structure of this homotetrameric enzyme related to dihydrodipicolinate synthase is known. In Clostridium tertium, the enzyme appears to be in an operon with a secreted sialidase that releases sialic acid from host sialoglycoconjugates. In several E. coli strains, however, this enzyme is responsible for N-acetyl-D-neuraminic acid synthesis for capsule production by condensing N-acetyl-D-mannosamine and pyruvate.
Probab=64.51 E-value=19 Score=38.90 Aligned_cols=74 Identities=8% Similarity=0.143 Sum_probs=52.5
Q ss_pred ccHHHHHHHHHHHhhcCCCeEEeccccch-----hhhhhhhcCCcEEEEeccccccccCCccccccccccCchHHHHHhh
Q 004491 476 QRTQAILSKLKYQIDKGLPIIGAGAGTGI-----SAKFEEAGGVDLIVLYNSGRFRMAGRGSLAGLLPFADANAVVLEMA 550 (749)
Q Consensus 476 ~~r~~il~~L~~~i~~~~piig~gaGtGl-----sAk~ae~gGaDli~~ynsGrfR~~G~~SlagllpygdaN~iv~e~~ 550 (749)
-.|+++++...+..+.+.||+....+... .||.|++.|||-|+++.--.|+ .+.+-+++.-
T Consensus 54 eEr~~~~~~~~~~~~~~~pvi~gv~~~~t~~~i~la~~a~~~Gad~v~v~~P~y~~--------------~~~~~i~~yf 119 (290)
T TIGR00683 54 EEKKEIFRIAKDEAKDQIALIAQVGSVNLKEAVELGKYATELGYDCLSAVTPFYYK--------------FSFPEIKHYY 119 (290)
T ss_pred HHHHHHHHHHHHHhCCCCcEEEecCCCCHHHHHHHHHHHHHhCCCEEEEeCCcCCC--------------CCHHHHHHHH
Confidence 36889999999998877787643222232 3689999999999986543222 2357777888
Q ss_pred hhhcCCCCCCceE
Q 004491 551 NEVLPVVKEVPVL 563 (749)
Q Consensus 551 ~eilp~v~~tPVi 563 (749)
++|.-...++||+
T Consensus 120 ~~v~~~~~~lpv~ 132 (290)
T TIGR00683 120 DTIIAETGGLNMI 132 (290)
T ss_pred HHHHhhCCCCCEE
Confidence 8887666678876
No 420
>PLN02274 inosine-5'-monophosphate dehydrogenase
Probab=64.47 E-value=23 Score=41.55 Aligned_cols=67 Identities=21% Similarity=0.390 Sum_probs=46.6
Q ss_pred cCHHHHHHHHhccCcEEEeccCCCcccccccccccCHHHHHHHHHHHHHHHHHhCCCeEEEEccCCCCCHHHHHHHHhhC
Q 004491 636 FNEGEAVKMAKAGADIIVAHMGLTTSGSIGAKTALSLDESVDRVQAIADAAHRINPDAIVLCHGGPISSPSEAEFILKRT 715 (749)
Q Consensus 636 f~~eqa~~Ma~AGaDiiv~h~GlT~gG~~Ga~~~~sl~~~~~~~~~i~~aa~~~~pdii~l~hGGPi~~p~d~~~~l~~~ 715 (749)
...|-++++.+||+|+|++-.. ...|+. .. +..+..++.-|+..++ .|.|.|++++++..+
T Consensus 248 ~~~~r~~~l~~ag~d~i~iD~~----------~g~~~~-~~----~~i~~ik~~~p~~~vi--~g~v~t~e~a~~a~~-- 308 (505)
T PLN02274 248 SDKERLEHLVKAGVDVVVLDSS----------QGDSIY-QL----EMIKYIKKTYPELDVI--GGNVVTMYQAQNLIQ-- 308 (505)
T ss_pred cHHHHHHHHHHcCCCEEEEeCC----------CCCcHH-HH----HHHHHHHHhCCCCcEE--EecCCCHHHHHHHHH--
Confidence 3358899999999999999772 122222 11 2333345566777766 578999999999995
Q ss_pred CCccEE
Q 004491 716 KGVHGF 721 (749)
Q Consensus 716 ~~~~Gf 721 (749)
.++|+.
T Consensus 309 aGaD~i 314 (505)
T PLN02274 309 AGVDGL 314 (505)
T ss_pred cCcCEE
Confidence 467776
No 421
>cd08572 GDPD_GDE5_like Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester phosphodiesterase GDE5-like proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in mammalian glycerophosphodiester phosphodiesterase GDE5-like proteins. GDE5 is widely expressed in mammalian tissues, with highest expression in spinal chord. Although its biological function remains unclear, mammalian GDE5 shows higher sequence homology to fungal and plant glycerophosphodiester phosphodiesterases (GP-GDEs, EC 3.1.4.46) than to other bacterial and mammalian GP-GDEs. It may also hydrolyze glycerophosphodiesters to sn-glycerol-3-phosphate (G3P) and the corresponding alcohols.
Probab=64.41 E-value=11 Score=40.72 Aligned_cols=96 Identities=22% Similarity=0.218 Sum_probs=63.6
Q ss_pred ccCchHHHHHhhhhhcCCCCCCceEEeeccC-------CCC-CCHHHHHHHHHHcCccceecCCcccccchhhhhhhhhc
Q 004491 539 FADANAVVLEMANEVLPVVKEVPVLAGVCGT-------DPF-RRVDYFLKQLESIGFFGVQNFPTVGLFDGNFRQNLEET 610 (749)
Q Consensus 539 ygdaN~iv~e~~~eilp~v~~tPViaGv~at-------DP~-~~~~~~l~~lk~~Gf~GV~NfPTvgliDG~fR~~LEe~ 610 (749)
+...|.-++...++..|. .|+.+-+... |+- ..+...+.-++..|+.|+.=-|.. +
T Consensus 184 ~~SF~~~~l~~l~~~~p~---~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~--- 247 (293)
T cd08572 184 FSSFDPDICIMLRLKQNK---YPVLFLTNGGTNEVEHMDPRRRSLQAAVNFALAEGLLGVVLHAED----------L--- 247 (293)
T ss_pred EECCCHHHHHHHHhhCcc---CCEEEEecCCCCcccccchhhhhHHHHHHHHHHCCCeEEEechHH----------h---
Confidence 455677888888887775 4655544322 111 123344555577787775411211 0
Q ss_pred CCchHHHHHHHHHHHHcCCccccccc--C-HHHHHHHHhccCcEEEe
Q 004491 611 GMGYGLEVEMIDKAHKMGLLTTPYAF--N-EGEAVKMAKAGADIIVA 654 (749)
Q Consensus 611 G~gy~~EVemi~~A~~~gl~T~~yvf--~-~eqa~~Ma~AGaDiiv~ 654 (749)
..-=++++.||+.|+...+|.. | +++.+++.+.|+|-|+.
T Consensus 248 ----~~~~~~v~~~~~~Gl~v~~wTv~~n~~~~~~~l~~~GVdgIiT 290 (293)
T cd08572 248 ----LKNPSLISLVKALGLVLFTYGDDNNDPENVKKQKELGVDGVIY 290 (293)
T ss_pred ----hcCcHHHHHHHHcCcEEEEECCCCCCHHHHHHHHHcCCCEEEe
Confidence 0012889999999999999999 6 68999999999999874
No 422
>cd02811 IDI-2_FMN Isopentenyl-diphosphate:dimethylallyl diphosphate isomerase type 2 (IDI-2) FMN-binding domain. Two types of IDIs have been characterized at present. The long known IDI-1 is only dependent on divalent metals for activity, whereas IDI-2 requires a metal, FMN and NADPH. IDI-2 catalyzes the interconversion of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP) in the mevalonate pathway.
Probab=64.40 E-value=22 Score=39.06 Aligned_cols=43 Identities=28% Similarity=0.385 Sum_probs=30.3
Q ss_pred HHHHHHHHHhhc-CCCeEEeccccchh---hhhhhhcCCcEEEEecc
Q 004491 480 AILSKLKYQIDK-GLPIIGAGAGTGIS---AKFEEAGGVDLIVLYNS 522 (749)
Q Consensus 480 ~il~~L~~~i~~-~~piig~gaGtGls---Ak~ae~gGaDli~~yns 522 (749)
.+++.|+.-++. ..||+-=..|+|++ ||..++.|+|.|.+-+.
T Consensus 165 ~~~~~i~~l~~~~~vPVivK~~g~g~s~~~a~~l~~~Gvd~I~vsG~ 211 (326)
T cd02811 165 GWLERIEELVKALSVPVIVKEVGFGISRETAKRLADAGVKAIDVAGA 211 (326)
T ss_pred HHHHHHHHHHHhcCCCEEEEecCCCCCHHHHHHHHHcCCCEEEECCC
Confidence 355555555555 78998755566654 67778899999999544
No 423
>PTZ00170 D-ribulose-5-phosphate 3-epimerase; Provisional
Probab=64.32 E-value=28 Score=36.40 Aligned_cols=121 Identities=20% Similarity=0.153 Sum_probs=73.3
Q ss_pred EEeeccCCCCCCHHHHHHHHHHcCccceecCCcccccchhhhhhhhhcCCchHHHHHHHHHHH-H--cCCcccccccCHH
Q 004491 563 LAGVCGTDPFRRVDYFLKQLESIGFFGVQNFPTVGLFDGNFRQNLEETGMGYGLEVEMIDKAH-K--MGLLTTPYAFNEG 639 (749)
Q Consensus 563 iaGv~atDP~~~~~~~l~~lk~~Gf~GV~NfPTvgliDG~fR~~LEe~G~gy~~EVemi~~A~-~--~gl~T~~yvf~~e 639 (749)
-..+.+.|| .++.+-+++|++.|+.-+ -+=++||+|=.|+ .+|. +.|+.||..- + .|+=.+ +.|++
T Consensus 10 ~pSi~~~d~-~~l~~~~~~l~~~~~~~~----H~DimDg~fvpn~---~~G~-~~v~~lr~~~~~~~lDvHLm--~~~p~ 78 (228)
T PTZ00170 10 APSILAADF-SKLADEAQDVLSGGADWL----HVDVMDGHFVPNL---SFGP-PVVKSLRKHLPNTFLDCHLM--VSNPE 78 (228)
T ss_pred ehhHhhcCH-HHHHHHHHHHHHcCCCEE----EEecccCccCCCc---CcCH-HHHHHHHhcCCCCCEEEEEC--CCCHH
Confidence 345677777 467788899999886554 4677889998887 3343 5566666432 1 122222 45564
Q ss_pred H-HHHHHhccCcEEEeccCCCcccccccccccCHHHHHHHHHHHHHHHHHhCCCeEEEEccCCCCCHHHHHHHH
Q 004491 640 E-AVKMAKAGADIIVAHMGLTTSGSIGAKTALSLDESVDRVQAIADAAHRINPDAIVLCHGGPISSPSEAEFIL 712 (749)
Q Consensus 640 q-a~~Ma~AGaDiiv~h~GlT~gG~~Ga~~~~sl~~~~~~~~~i~~aa~~~~pdii~l~hGGPi~~p~d~~~~l 712 (749)
. .+.++++|||+|..|.--+ ..++. +..+++++.+..+-+-+. |=...+++++++
T Consensus 79 ~~i~~~~~~Gad~itvH~ea~---------~~~~~-------~~l~~ik~~G~~~gval~--p~t~~e~l~~~l 134 (228)
T PTZ00170 79 KWVDDFAKAGASQFTFHIEAT---------EDDPK-------AVARKIREAGMKVGVAIK--PKTPVEVLFPLI 134 (228)
T ss_pred HHHHHHHHcCCCEEEEeccCC---------chHHH-------HHHHHHHHCCCeEEEEEC--CCCCHHHHHHHH
Confidence 4 5577899999999996521 11133 334444444443333333 556777777776
No 424
>TIGR02313 HpaI-NOT-DapA 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase. This model represents a subset of the DapA (dihydrodipicolinate synthase) family which has apparently evolved a separate function. The product of DapA, dihydrodipicolinate, results from the non-enzymatic cyclization and dehydration of 6-amino-2,4-dihydroxyhept-2-ene-1,7-dioic acid, which is different from the substrate of this reaction only in the presence of the amino group. In the absence of this amino group, and running the reaction in the opposite direction, the reaction corresponds to the HpaI aldolase component of the 4-hydroxyphenylacetic acid catabolism pathway (see TIGR02311). At present, this variant of DapA is found only in Oceanobacillus iheyensis HTE831 and Thermus thermophilus HB27. In both of these cases, one or more other DapA genes can be found and the one identified by this model is part of an operon for 4-hydroxyphenylacetic acid catabolism.
Probab=64.30 E-value=16 Score=39.49 Aligned_cols=102 Identities=16% Similarity=0.198 Sum_probs=64.3
Q ss_pred ccccHHHHHHHHHHHhhcCCCeEEeccccch-----hhhhhhhcCCcEEEEeccccccccCCccccccccccCchHHHHH
Q 004491 474 TLQRTQAILSKLKYQIDKGLPIIGAGAGTGI-----SAKFEEAGGVDLIVLYNSGRFRMAGRGSLAGLLPFADANAVVLE 548 (749)
Q Consensus 474 ~~~~r~~il~~L~~~i~~~~piig~gaGtGl-----sAk~ae~gGaDli~~ynsGrfR~~G~~SlagllpygdaN~iv~e 548 (749)
|.-.|.++++...+..+.+.||+....+... -||.|++.|||-+++..-- |.+. +-+-+.+
T Consensus 51 s~~Er~~l~~~~~~~~~g~~pvi~gv~~~~t~~ai~~a~~A~~~Gad~v~v~pP~------------y~~~--~~~~l~~ 116 (294)
T TIGR02313 51 TLEERKQAIENAIDQIAGRIPFAPGTGALNHDETLELTKFAEEAGADAAMVIVPY------------YNKP--NQEALYD 116 (294)
T ss_pred CHHHHHHHHHHHHHHhCCCCcEEEECCcchHHHHHHHHHHHHHcCCCEEEEcCcc------------CCCC--CHHHHHH
Confidence 3456888999888888878888732222233 4689999999999975422 2333 2355666
Q ss_pred hhhhhcCCCCCCceEEe----eccCCCCCCHHHHHHHHHH--cCccceec
Q 004491 549 MANEVLPVVKEVPVLAG----VCGTDPFRRVDYFLKQLES--IGFFGVQN 592 (749)
Q Consensus 549 ~~~eilp~v~~tPViaG----v~atDP~~~~~~~l~~lk~--~Gf~GV~N 592 (749)
.-++|...++++||+.= ..+.|- -..++.+|.+ -.+.||-.
T Consensus 117 ~f~~ia~a~~~lpv~iYn~P~~tg~~l---~~~~l~~L~~~~pnv~giK~ 163 (294)
T TIGR02313 117 HFAEVADAVPDFPIIIYNIPGRAAQEI---APKTMARLRKDCPNIVGAKE 163 (294)
T ss_pred HHHHHHHhccCCCEEEEeCchhcCcCC---CHHHHHHHHhhCCCEEEEEe
Confidence 66777777657886532 222221 2567777753 46666654
No 425
>TIGR00542 hxl6Piso_put hexulose-6-phosphate isomerase, putative. This family is conserved at better than 40 % identity among the four known examples from three species: Escherichia coli (SgbU and SgaU), Haemophilus influenzae, and Mycoplasma pneumoniae. The rarity of the family, high level of conservation, and proposed catabolic role suggests lateral transfer may be a part of the evolutionary history of this protein.
Probab=63.89 E-value=1.5e+02 Score=31.08 Aligned_cols=132 Identities=11% Similarity=-0.100 Sum_probs=73.0
Q ss_pred CCCHHHHHHHHHHcCccceecCCcc-------ccc-c---hhhhhhhhhcCCchHHHHHHHHHHHHcCCcccccc-cCH-
Q 004491 572 FRRVDYFLKQLESIGFFGVQNFPTV-------GLF-D---GNFRQNLEETGMGYGLEVEMIDKAHKMGLLTTPYA-FNE- 638 (749)
Q Consensus 572 ~~~~~~~l~~lk~~Gf~GV~NfPTv-------gli-D---G~fR~~LEe~G~gy~~EVemi~~A~~~gl~T~~yv-f~~- 638 (749)
-..+.+.++.+++.||.||.=++.= -.+ + -.+|+.|++.|+.-. .+... ..+ ..++. .++
T Consensus 15 ~~~~~e~l~~~~~~G~~~VEl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~i~----~~~~~-~~~--~~~l~~~~~~ 87 (279)
T TIGR00542 15 GECWLERLQLAKTCGFDFVEMSVDETDDRLSRLDWSREQRLALVNAIIETGVRIP----SMCLS-AHR--RFPLGSKDKA 87 (279)
T ss_pred CCCHHHHHHHHHHcCCCEEEEecCCccchhhccCCCHHHHHHHHHHHHHcCCCce----eeecC-CCc--cCcCCCcCHH
Confidence 5789999999999999999654210 000 1 224444555444321 00000 000 00111 122
Q ss_pred ---------HH-HHHHHhccCcEEEeccCCCcccccccccccCHHHHHHHHHHHHHHHHHhCCCeEEEE--ccC-CCCCH
Q 004491 639 ---------GE-AVKMAKAGADIIVAHMGLTTSGSIGAKTALSLDESVDRVQAIADAAHRINPDAIVLC--HGG-PISSP 705 (749)
Q Consensus 639 ---------eq-a~~Ma~AGaDiiv~h~GlT~gG~~Ga~~~~sl~~~~~~~~~i~~aa~~~~pdii~l~--hGG-Pi~~p 705 (749)
++ .+...+.|++.|+.+.+.. ..+-.+....+.+++..+++.+.|.+.+ |.+.+ |.+ .+.++
T Consensus 88 ~r~~~~~~~~~~i~~a~~lG~~~v~~~~~~~---~~~~~~~~~~~~~~~~l~~l~~~A~~~G--v~l~lE~~~~~~~~t~ 162 (279)
T TIGR00542 88 VRQQGLEIMEKAIQLARDLGIRTIQLAGYDV---YYEEHDEETRRRFREGLKEAVELAARAQ--VTLAVEIMDTPFMSSI 162 (279)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCEEEecCccc---ccCcCCHHHHHHHHHHHHHHHHHHHHcC--CEEEEeeCCCchhcCH
Confidence 12 2234588999998863211 1122234457778888889988888654 44444 444 46889
Q ss_pred HHHHHHHhhC
Q 004491 706 SEAEFILKRT 715 (749)
Q Consensus 706 ~d~~~~l~~~ 715 (749)
+++..+++.+
T Consensus 163 ~~~~~li~~v 172 (279)
T TIGR00542 163 SKWLKWDHYL 172 (279)
T ss_pred HHHHHHHHHc
Confidence 9988888653
No 426
>cd08574 GDPD_GDE_2_3_6 Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester phosphodiesterase GDE2, GDE3, GDE6-like proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in mammalian glycerophosphodiester phosphodiesterase domain-containing protein subtype 5 (GDE2), subtype 2 (GDE3), subtype 1 (GDE6), and their eukaryotic homologs. Mammalian GDE2, GDE3, and GDE6 show very high sequence similarity to each other and have been classified into the same family. Although they are all transmembrane proteins, based on different pattern of tissue distribution, these enzymes might display diverse cellular functions. Mammalian GDE2 is primarily expressed in mature neurons. It selectively hydrolyzes glycerophosphocholine (GPC) and mainly functions in a complex with an antioxidant scavenger peroxiredoxin1 (Prdx1) to control motor neuron differentiation in the spinal cord. Mammalian GDE3 is specifically expressed in bo
Probab=63.89 E-value=8.3 Score=40.53 Aligned_cols=36 Identities=14% Similarity=0.097 Sum_probs=33.2
Q ss_pred HHHHHHHHcCCcccccccC-HHHHHHHHhccCcEEEe
Q 004491 619 EMIDKAHKMGLLTTPYAFN-EGEAVKMAKAGADIIVA 654 (749)
Q Consensus 619 emi~~A~~~gl~T~~yvf~-~eqa~~Ma~AGaDiiv~ 654 (749)
++++.||+.|+...+|..| ++++++|.+.|+|-|+.
T Consensus 214 ~~v~~~~~~g~~v~~WTVn~~~~~~~l~~~GVdgIiT 250 (252)
T cd08574 214 QEIREYSKANISVNLYVVNEPWLYSLLWCSGVQSVTT 250 (252)
T ss_pred HHHHHHHHCCCEEEEEccCCHHHHHHHHHcCCCEEec
Confidence 6899999999999999888 79999999999999874
No 427
>TIGR01501 MthylAspMutase methylaspartate mutase, S subunit. This model represents the S (sigma) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=63.64 E-value=83 Score=30.87 Aligned_cols=93 Identities=12% Similarity=0.157 Sum_probs=53.9
Q ss_pred cccccccCHHHHHHH-HhccCcEEEeccCCCcccccccccccCHHHHHHHHHHHHHHHHHhCC-CeEEEEccCCCCCHHH
Q 004491 630 LTTPYAFNEGEAVKM-AKAGADIIVAHMGLTTSGSIGAKTALSLDESVDRVQAIADAAHRINP-DAIVLCHGGPISSPSE 707 (749)
Q Consensus 630 ~T~~yvf~~eqa~~M-a~AGaDiiv~h~GlT~gG~~Ga~~~~sl~~~~~~~~~i~~aa~~~~p-dii~l~hGGPi~~p~d 707 (749)
.-++-.-++|+-.+- .+.+||+|+.-- .+ ..+++... ++.+..++.+. ++.++|=|+|+-.++|
T Consensus 33 i~LG~~v~~e~~v~aa~~~~adiVglS~------l~----~~~~~~~~----~~~~~l~~~gl~~~~vivGG~~vi~~~d 98 (134)
T TIGR01501 33 VNLGVLSPQEEFIKAAIETKADAILVSS------LY----GHGEIDCK----GLRQKCDEAGLEGILLYVGGNLVVGKQD 98 (134)
T ss_pred EECCCCCCHHHHHHHHHHcCCCEEEEec------cc----ccCHHHHH----HHHHHHHHCCCCCCEEEecCCcCcChhh
Confidence 344444455555444 588999998632 22 12333333 34444444433 5666677777777777
Q ss_pred HHHH---HhhCCCccEEecCcccccchHHHHHHHHHH
Q 004491 708 AEFI---LKRTKGVHGFYGASSMERLPVEQAITSTMR 741 (749)
Q Consensus 708 ~~~~---l~~~~~~~Gf~g~Ss~ERlP~E~ai~~~~~ 741 (749)
...+ |+. -+++..|+.++ |.|..+....+
T Consensus 99 ~~~~~~~l~~-~Gv~~vF~pgt----~~~~iv~~l~~ 130 (134)
T TIGR01501 99 FPDVEKRFKE-MGFDRVFAPGT----PPEVVIADLKK 130 (134)
T ss_pred hHHHHHHHHH-cCCCEEECcCC----CHHHHHHHHHH
Confidence 6543 666 56888888776 56665554433
No 428
>TIGR03586 PseI pseudaminic acid synthase.
Probab=63.58 E-value=70 Score=35.70 Aligned_cols=54 Identities=13% Similarity=0.183 Sum_probs=46.1
Q ss_pred hhhhhhhhcCCchHHHHHHHHHHHHcCCcccccccCHHHHHHHHhccCcEEEec
Q 004491 602 NFRQNLEETGMGYGLEVEMIDKAHKMGLLTTPYAFNEGEAVKMAKAGADIIVAH 655 (749)
Q Consensus 602 ~fR~~LEe~G~gy~~EVemi~~A~~~gl~T~~yvf~~eqa~~Ma~AGaDiiv~h 655 (749)
...+.+++.-++++.-.++...|++.||..+.=+|+++++.-+.+-|+|++=+.
T Consensus 64 ~~~~~~~~~el~~e~~~~L~~~~~~~Gi~~~stpfd~~svd~l~~~~v~~~KI~ 117 (327)
T TIGR03586 64 TLYDLYQEAHTPWEWHKELFERAKELGLTIFSSPFDETAVDFLESLDVPAYKIA 117 (327)
T ss_pred cHHHHHHHhhCCHHHHHHHHHHHHHhCCcEEEccCCHHHHHHHHHcCCCEEEEC
Confidence 444555666689988889999999999999999999999999999999988554
No 429
>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed
Probab=63.43 E-value=22 Score=41.19 Aligned_cols=89 Identities=26% Similarity=0.445 Sum_probs=58.5
Q ss_pred cCHHHHHHHHhccCcEEEeccCCCcccccccccccCHHHHHHHHHHHHHHHHHhCCCeEEEEccCCCCCHHHHHHHHhhC
Q 004491 636 FNEGEAVKMAKAGADIIVAHMGLTTSGSIGAKTALSLDESVDRVQAIADAAHRINPDAIVLCHGGPISSPSEAEFILKRT 715 (749)
Q Consensus 636 f~~eqa~~Ma~AGaDiiv~h~GlT~gG~~Ga~~~~sl~~~~~~~~~i~~aa~~~~pdii~l~hGGPi~~p~d~~~~l~~~ 715 (749)
.+.+.+++|.++|+|+|+.-.- -| ..+..++.++.| ++..||+.+++ |-+.++++++++.+.
T Consensus 228 ~~~e~a~~L~~agvdvivvD~a---~g--------~~~~vl~~i~~i----~~~~p~~~vi~--g~v~t~e~a~~l~~a- 289 (486)
T PRK05567 228 DNEERAEALVEAGVDVLVVDTA---HG--------HSEGVLDRVREI----KAKYPDVQIIA--GNVATAEAARALIEA- 289 (486)
T ss_pred chHHHHHHHHHhCCCEEEEECC---CC--------cchhHHHHHHHH----HhhCCCCCEEE--eccCCHHHHHHHHHc-
Confidence 4579999999999999985211 01 123444444444 33447777776 889999999999954
Q ss_pred CCccEE---ecCcccc--c------chHHHHHHHHHHhh
Q 004491 716 KGVHGF---YGASSME--R------LPVEQAITSTMRQY 743 (749)
Q Consensus 716 ~~~~Gf---~g~Ss~E--R------lP~E~ai~~~~~~F 743 (749)
++++. +|..|.+ | +|.=.++.+..+.-
T Consensus 290 -Gad~i~vg~g~gs~~~~r~~~~~g~p~~~~~~~~~~~~ 327 (486)
T PRK05567 290 -GADAVKVGIGPGSICTTRIVAGVGVPQITAIADAAEAA 327 (486)
T ss_pred -CCCEEEECCCCCccccceeecCCCcCHHHHHHHHHHHh
Confidence 66776 3333321 2 57777887776644
No 430
>PRK08463 acetyl-CoA carboxylase subunit A; Validated
Probab=63.28 E-value=1.9e+02 Score=33.54 Aligned_cols=151 Identities=15% Similarity=0.176 Sum_probs=95.4
Q ss_pred hhhhhhhhcCCcEEEEeccccccccCCccccccccccCchHHHHHhhhhhcCCCCCCceEEeeccCCCCCCHHHHHHHHH
Q 004491 504 ISAKFEEAGGVDLIVLYNSGRFRMAGRGSLAGLLPFADANAVVLEMANEVLPVVKEVPVLAGVCGTDPFRRVDYFLKQLE 583 (749)
Q Consensus 504 lsAk~ae~gGaDli~~ynsGrfR~~G~~SlagllpygdaN~iv~e~~~eilp~v~~tPViaGv~atDP~~~~~~~l~~lk 583 (749)
..++.+.+-|.+.+.+|... |.+..-..++.|...+ +-.....|.+.+..++-.+
T Consensus 16 ~~i~aa~~lG~~~v~v~~~~-----------------d~~~~~~~~AD~~~~i--------~~~~~~~y~d~~~i~~~a~ 70 (478)
T PRK08463 16 RVIRACRDLHIKSVAIYTEP-----------------DRECLHVKIADEAYRI--------GTDPIKGYLDVKRIVEIAK 70 (478)
T ss_pred HHHHHHHHcCCeEEEEECCC-----------------ccCCcchhhcCEEEEc--------CCCchhcccCHHHHHHHHH
Confidence 44567788889988887642 3333445556552221 1011245888999999999
Q ss_pred HcCccceecCCccccc--chhhhhhhhhcCCc---hHHH--------HHHHHHHHHcCCccccccc-----CHHHHHHHH
Q 004491 584 SIGFFGVQNFPTVGLF--DGNFRQNLEETGMG---YGLE--------VEMIDKAHKMGLLTTPYAF-----NEGEAVKMA 645 (749)
Q Consensus 584 ~~Gf~GV~NfPTvgli--DG~fR~~LEe~G~g---y~~E--------Vemi~~A~~~gl~T~~yvf-----~~eqa~~Ma 645 (749)
+.++.+|.- ..|.. +..|.+.+|+.|+- -+.| ..|-+.+.+.|+-+.|+.+ +.+++.+.+
T Consensus 71 ~~~iDaI~p--g~g~lsE~~~~a~~~e~~Gi~~iGps~~~i~~~~DK~~~k~~l~~~gIpvpp~~~~~~~~~~~~~~~~~ 148 (478)
T PRK08463 71 ACGADAIHP--GYGFLSENYEFAKAVEDAGIIFIGPKSEVIRKMGNKNIARYLMKKNGIPIVPGTEKLNSESMEEIKIFA 148 (478)
T ss_pred HhCCCEEEE--CCCccccCHHHHHHHHHCCCceecCCHHHHHhhCcHHHHHHHHHHcCCCCCCCccccCCCCHHHHHHHH
Confidence 999988853 33332 35688999999974 3444 3555678999999988543 467777665
Q ss_pred -hccCcEEEeccCCCcccccccccccCHHHHHHHHHHHH
Q 004491 646 -KAGADIIVAHMGLTTSGSIGAKTALSLDESVDRVQAIA 683 (749)
Q Consensus 646 -~AGaDiiv~h~GlT~gG~~Ga~~~~sl~~~~~~~~~i~ 683 (749)
+-|-=+|+==. .-||..|.....+.+|..+.++...
T Consensus 149 ~~igyPvvvKP~--~ggGg~Gv~iv~~~~eL~~a~~~~~ 185 (478)
T PRK08463 149 RKIGYPVILKAS--GGGGGRGIRVVHKEEDLENAFESCK 185 (478)
T ss_pred HHhCCCEEEEeC--CCCCCCceEEeCCHHHHHHHHHHHH
Confidence 34544444222 2357788777777776665555443
No 431
>cd08177 MAR Maleylacetate reductase is involved in many aromatic compounds degradation pathways of aerobic microbes. Maleylacetate reductases (MAR) play an important role in the degradation of aromatic compounds in aerobic microbes. In fungi and yeasts, the enzymes are involved in the catabolism of compounds such as phenol, tyrosine, benzoate, 4-hydroxybenzoate and resorcinol. In bacteria, the enzymes contribute to the degradation of resorcinol, 2,4-dihydroxybenzoate ([beta]-resorcylate) and 2,6-dihydroxybenzoate ([gamma]-resorcylate) via hydroxyquinol and maleylacetate. Maleylacetate reductases catalyze NADH- or NADPH-dependent reduction, at the carbon-carbon double bond, of maleylacetate or 2-chloromaleylacetate to 3-oxoadipate. In the case of 2-chloromaleylacetate, Maleylacetate reductases initially catalyses the NAD(P)H-dependent dechlorination to maleylacetate, which is then reduced to 3-oxoadipate. This enzyme is a homodimer. It is inhibited by thiol-blocking reagents such as p-
Probab=63.27 E-value=8.8 Score=41.99 Aligned_cols=41 Identities=24% Similarity=0.464 Sum_probs=30.3
Q ss_pred hcCcccEEEEecCcchhHHHHHHhhhCCCCCCeeEEecccCCC
Q 004491 110 EDQVLAGVIGLGGSGGTSLISSAFKSLPIGLPKVIVSTVASGQ 152 (749)
Q Consensus 110 ~~g~i~GVIglGGs~GT~lat~aMr~LPiG~PKlmVSTmASGd 152 (749)
++.+.|.|||+|||.--.++=.+--.+ ++|-+.|-|.+||+
T Consensus 74 ~~~~~d~IIaiGGGs~iD~aK~ia~~~--~~p~i~IPTtatgs 114 (337)
T cd08177 74 REAGADGIVAIGGGSTIDLAKAIALRT--GLPIIAIPTTLSGS 114 (337)
T ss_pred HhcCCCEEEEeCCcHHHHHHHHHHHHh--cCCEEEEcCCchhh
Confidence 346899999999997766664332212 78999999888885
No 432
>cd01424 MGS_CPS_II Methylglyoxal synthase-like domain from type II glutamine-dependent carbamoyl phosphate synthetase (CSP). CSP, a CarA and CarB heterodimer, catalyzes the production of carbamoyl phosphate which is subsequently employed in the metabolic pathways responsible for the synthesis of pyrimidine nucleotides or arginine. The MGS-like domain is the C-terminal domain of CarB and appears to play a regulatory role in CPS function by binding allosteric effector molecules, including UMP and ornithine.
Probab=63.22 E-value=19 Score=32.98 Aligned_cols=64 Identities=23% Similarity=0.290 Sum_probs=42.8
Q ss_pred HHHhcCccEEEEecCCCchHHHHHHHHcCCceEEEeCchhhhhhhhhCCccCCCCchhhhhhhcCCCeEEe
Q 004491 230 RLEKEGYETMVFHATGVGGRAMEALVKEGFIQGVLDITTTEVADYVVGGVMACDSSRFDATIEKKIPLVLS 300 (749)
Q Consensus 230 ~Le~~GyEvlVFHATG~GGrAME~Li~eG~~~gVlDlTttElaD~l~GGv~saGp~RL~AA~~~GIPqVVs 300 (749)
.|++.|..|-....--.|....-+++++|.+|-|+.+.+.. + ....|-.--++|++.|||.+-+
T Consensus 38 ~l~~~gi~~~~v~~~~~~~~~i~~~i~~~~id~vIn~~~~~--~-----~~~~~~~iRR~Av~~~ipl~T~ 101 (110)
T cd01424 38 YLQEAGIPVEVVNKVSEGRPNIVDLIKNGEIQLVINTPSGK--R-----AIRDGFSIRRAALEYKVPYFTT 101 (110)
T ss_pred HHHHcCCeEEEEeecCCCchhHHHHHHcCCeEEEEECCCCC--c-----cCccHHHHHHHHHHhCCCEEec
Confidence 45556665443322213557788889999999999986421 1 1334556678999999999854
No 433
>COG0129 IlvD Dihydroxyacid dehydratase/phosphogluconate dehydratase [Amino acid transport and metabolism / Carbohydrate transport and metabolism]
Probab=63.20 E-value=20 Score=42.65 Aligned_cols=284 Identities=19% Similarity=0.231 Sum_probs=178.7
Q ss_pred CCCcEEEE-eccCCchHH-------HHHHHHHHHhcCccEEEEecCCCch--------------------HHHHHHHHcC
Q 004491 207 KEKCTVGI-TMFGVTTPC-------VNAVKERLEKEGYETMVFHATGVGG--------------------RAMEALVKEG 258 (749)
Q Consensus 207 ~~kp~Igi-TMFGvTTp~-------V~~~r~~Le~~GyEvlVFHATG~GG--------------------rAME~Li~eG 258 (749)
.+||.||| ++|.--+|| .+.+++..++.|-=.+-|+..++.- .++|.+++.-
T Consensus 40 ~~kP~IgI~~s~~d~~p~h~hl~~l~~~vk~~i~~aGg~p~ef~t~~v~DGiamG~~GM~~SL~SRelIAds~e~~~~~~ 119 (575)
T COG0129 40 FGKPIIGIANSYNDMVPGHQHLKDLAQLVKEGIREAGGVPVEFGTIAVCDGIAMGHDGMPYSLPSRELIADSVEEVLSAH 119 (575)
T ss_pred cCCCeEEEEeccccCcCchhhHHHHHHHHHHHHHHcCCceeEeCCCCccCccccCCCCcccccccHHHHHHHHHHHHhcc
Confidence 48999997 667777787 5667788888898889999877654 4789999999
Q ss_pred CceEEEeCchhhhhhhhhCCccCCCCchhhhhhhcCCCeEEecCccccccCCC---CCCCCccccCCceeeecCcceEEe
Q 004491 259 FIQGVLDITTTEVADYVVGGVMACDSSRFDATIEKKIPLVLSVGALDMVNFGA---KDTIPSKFQRRKIHVHNQQVSLMR 335 (749)
Q Consensus 259 ~~~gVlDlTttElaD~l~GGv~saGp~RL~AA~~~GIPqVVspGalDmVnFG~---~dtvPe~f~~R~~~~HNp~vTlmR 335 (749)
.|||++=|.. ||-. -|.=|-||++..||.|.+||+- |.+=-. +-++-..|+.|..|... +
T Consensus 120 ~~Da~V~i~~---CDKi-------~PG~lmaa~r~niPaIfv~gGp-M~~G~~~~~~~~~~~~~~~~~~~~aG------~ 182 (575)
T COG0129 120 PFDGVVLIGG---CDKI-------TPGMLMAAARLNIPAIFVSGGP-MLAGKVNGEKAGGTSVFEAVGAYAAG------K 182 (575)
T ss_pred CcceEEEecC---CCCc-------cHHHHHHHHhcCCCEEEecCCc-CCCCccCCccccchhHHHHHHHHHcC------C
Confidence 9999986643 4433 4667899999999999999963 222100 11123445555555555 6
Q ss_pred cCHHHHHHHHHHHHHHHccCCCCeEEEeeCCCCcccCCCCCCCCChhhhHHHHHHHHHhcccCCCceEEecCCCCCCHHH
Q 004491 336 TTVDENKKFAAFIANKLNQSSSKIRLCLPQNGISALDAPGKPFYDPEATGTLISELRTLIQTNEDRQVKVYPHNINDSEF 415 (749)
Q Consensus 336 Tt~eE~~~ig~~iA~kLn~a~gpv~vllP~~G~S~lD~~G~pf~DPeAd~al~~~L~~~l~~~~~~~v~~~d~hINDp~F 415 (749)
.+.||..++-+ +.|++ -|-. +-+|=...-+.|.|+|==.|+.+.-. ...|=.-.++
T Consensus 183 is~ee~~~~E~------~acps--------~GsC------~~mgTAnTm~~l~EaLGlsLPgsa~~----pa~~~~r~~l 238 (575)
T COG0129 183 ISREELLEIER------SACPS--------PGSC------SGMGTANTMNCLAEALGLSLPGSASI----PATSAERKAL 238 (575)
T ss_pred CCHHHHHHHHH------hcCCC--------CCcc------cccccHhHHHHHHHHHcCCCCCCcCC----CCCCHHHHHH
Confidence 67777765543 22322 2211 34667788899999999888876432 2233344567
Q ss_pred HHHHHHHHHHHHhccccccCCccccccccccccccccccCCCcccccCCCCCCCCCCcccccHHHHHHHHHHHhhcCCCe
Q 004491 416 ADALVDSFLEISGKNLMAFSSAHHVSCERHEDSVSNIYSSSHGTICYSPSNFPDARPETLQRTQAILSKLKYQIDKGLPI 495 (749)
Q Consensus 416 A~a~a~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~il~~L~~~i~~~~pi 495 (749)
+.....++++|..+ +-+|..++|++.+...+.--++-|.
T Consensus 239 ~~~ag~~ivel~~~---------------------------------------~i~p~~IlT~~AfeNAi~v~~A~GG-- 277 (575)
T COG0129 239 AREAGRRIVELVEE---------------------------------------DIKPRDILTKKAFENAIVVDMATGG-- 277 (575)
T ss_pred HHHHHHHHHHHHhc---------------------------------------CCCHHHccCHHHHHHHHHHHHHhcc--
Confidence 77777777777322 2467778899999888776665431
Q ss_pred EEecccc--chhhhhhhhcCCcEEEEeccccccccCCccccccccccCchHHHHHhhhhhcCCCCCCceEEeeccCCCCC
Q 004491 496 IGAGAGT--GISAKFEEAGGVDLIVLYNSGRFRMAGRGSLAGLLPFADANAVVLEMANEVLPVVKEVPVLAGVCGTDPFR 573 (749)
Q Consensus 496 ig~gaGt--GlsAk~ae~gGaDli~~ynsGrfR~~G~~SlagllpygdaN~iv~e~~~eilp~v~~tPViaGv~atDP~~ 573 (749)
..=+ =|.| .|.++|+||=+ .|=| + .=+++|+|+=|-.+-+..
T Consensus 278 ---STN~vLHLlA-iA~~aGv~ltl---------------------dD~d--------~---is~~vP~L~~v~Png~~y 321 (575)
T COG0129 278 ---STNAVLHLLA-IAREAGVDLTL---------------------DDFD--------R---ISRKVPLLAKVYPNGGKY 321 (575)
T ss_pred ---hhhHHHHHHH-HHHHcCCCCCH---------------------HHHH--------H---HhccCCeEEEecCCCCcc
Confidence 0000 0222 34455566532 1111 1 124689999998866455
Q ss_pred CHHH---------HHHHHHHcCccceecCCcccccchhhhhhhhhcC
Q 004491 574 RVDY---------FLKQLESIGFFGVQNFPTVGLFDGNFRQNLEETG 611 (749)
Q Consensus 574 ~~~~---------~l~~lk~~Gf~GV~NfPTvgliDG~fR~~LEe~G 611 (749)
.|.+ .+++|.+.|.= =..-+||..- ...++|++.-
T Consensus 322 ~~~d~~~AGGvp~v~~~L~~~GLL-h~D~~TV~G~--Tl~e~l~~~~ 365 (575)
T COG0129 322 DMEDFHRAGGVPAVMKELLKAGLL-HGDVLTVTGK--TLGENLEGAE 365 (575)
T ss_pred cHHHHHHccCHHHHHHHHHHcCCc-CCCcceeeCc--CHHHHHhhcc
Confidence 5554 47899998830 0234555544 6667775543
No 434
>TIGR00035 asp_race aspartate racemase.
Probab=62.99 E-value=59 Score=33.70 Aligned_cols=26 Identities=19% Similarity=0.258 Sum_probs=17.9
Q ss_pred EeeccCCCCCCHHHHHHHHHHcCccc
Q 004491 564 AGVCGTDPFRRVDYFLKQLESIGFFG 589 (749)
Q Consensus 564 aGv~atDP~~~~~~~l~~lk~~Gf~G 589 (749)
.||.||..+.....|-+.|++.||.-
T Consensus 120 VgvLaT~~T~~s~~y~~~l~~~g~~v 145 (229)
T TIGR00035 120 AGLLGTKGTMKDGVYEREMKKHGIEI 145 (229)
T ss_pred EEEEecHHHHHhHHHHHHHHHCCCEE
Confidence 56777777777777777777777543
No 435
>PLN00106 malate dehydrogenase
Probab=62.66 E-value=36 Score=37.74 Aligned_cols=93 Identities=24% Similarity=0.350 Sum_probs=64.0
Q ss_pred HhccCcEEEeccCCCcccccccccccCHHHHHHHHHHHHHHHHHhCCCeEEEEccCCCCC--HHHHHHHHhhCCCc--cE
Q 004491 645 AKAGADIIVAHMGLTTSGSIGAKTALSLDESVDRVQAIADAAHRINPDAIVLCHGGPISS--PSEAEFILKRTKGV--HG 720 (749)
Q Consensus 645 a~AGaDiiv~h~GlT~gG~~Ga~~~~sl~~~~~~~~~i~~aa~~~~pdii~l~hGGPi~~--p~d~~~~l~~~~~~--~G 720 (749)
+-.|+|++|.-.|.-.. -|.....-|..-+..+.+|.+++++.+||-+++..--|..+ |-.. |.+.+.++. +=
T Consensus 83 ~l~~aDiVVitAG~~~~--~g~~R~dll~~N~~i~~~i~~~i~~~~p~aivivvSNPvD~~~~i~t-~~~~~~s~~p~~~ 159 (323)
T PLN00106 83 ALKGADLVIIPAGVPRK--PGMTRDDLFNINAGIVKTLCEAVAKHCPNALVNIISNPVNSTVPIAA-EVLKKAGVYDPKK 159 (323)
T ss_pred HcCCCCEEEEeCCCCCC--CCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEeCCCccccHHHHH-HHHHHcCCCCcce
Confidence 45799999998886543 13344445667778899999999999999999988666542 3333 444444443 56
Q ss_pred EecCcccccchHHHHHHHHHHhh
Q 004491 721 FYGASSMERLPVEQAITSTMRQY 743 (749)
Q Consensus 721 f~g~Ss~ERlP~E~ai~~~~~~F 743 (749)
+||-+. |.++|.-.-..+.+
T Consensus 160 viG~~~---LDs~Rl~~~lA~~l 179 (323)
T PLN00106 160 LFGVTT---LDVVRANTFVAEKK 179 (323)
T ss_pred EEEEec---chHHHHHHHHHHHh
Confidence 787752 88888666555554
No 436
>PRK05269 transaldolase B; Provisional
Probab=62.53 E-value=24 Score=39.12 Aligned_cols=148 Identities=17% Similarity=0.231 Sum_probs=89.5
Q ss_pred chHHHHHhhhhhcCCCCCCceEEee---ccCCCCCCH---HHHHHHHHHcCccc---eecCCcccccchhhhhhhhhcCC
Q 004491 542 ANAVVLEMANEVLPVVKEVPVLAGV---CGTDPFRRV---DYFLKQLESIGFFG---VQNFPTVGLFDGNFRQNLEETGM 612 (749)
Q Consensus 542 aN~iv~e~~~eilp~v~~tPViaGv---~atDP~~~~---~~~l~~lk~~Gf~G---V~NfPTvgliDG~fR~~LEe~G~ 612 (749)
++.....++.|+++.+.. +|-.=| .+.|.-.-+ .++.+..++.|+.+ +.--|.. +.|
T Consensus 74 ~d~l~v~~g~ei~~~i~G-~Vs~EVdp~l~~d~~~~i~~A~~l~~~~~~~gi~~~~v~IKIPaT--~eG----------- 139 (318)
T PRK05269 74 IDKLAVNFGLEILKLIPG-RVSTEVDARLSFDTEATIAKARKLIALYEEAGISKDRILIKIAST--WEG----------- 139 (318)
T ss_pred HHHHHHHHHHHHHhcCCC-CEEEEEecccccCHHHHHHHHHHHHHHhhhcCCCCCcEEEEeCCC--HHH-----------
Confidence 344455677888888753 676666 233322111 22223333445543 2233532 444
Q ss_pred chHHHHHHHHHHHHcCCccc-ccccCHHHHHHHHhccCcEEEeccCCCccc---cccc-ccccCHHHHHHHHHHHHHHHH
Q 004491 613 GYGLEVEMIDKAHKMGLLTT-PYAFNEGEAVKMAKAGADIIVAHMGLTTSG---SIGA-KTALSLDESVDRVQAIADAAH 687 (749)
Q Consensus 613 gy~~EVemi~~A~~~gl~T~-~yvf~~eqa~~Ma~AGaDiiv~h~GlT~gG---~~Ga-~~~~sl~~~~~~~~~i~~aa~ 687 (749)
++.++.-.+.|+-+. -.+|+.+||.+-++|||++|-+.+|.-..= ..|. .....-+..+..+++|++.-+
T Consensus 140 -----i~A~~~L~~~GI~vn~TlvFs~~Qa~~aa~AGa~~ISPfVgRi~d~~~~~~~~~~~~~~~~~Gv~~v~~i~~~~k 214 (318)
T PRK05269 140 -----IRAAEQLEKEGINCNLTLLFSFAQARACAEAGVFLISPFVGRILDWYKKNTGKKEYAPAEDPGVVSVTKIYNYYK 214 (318)
T ss_pred -----HHHHHHHHHcCCceeEeEecCHHHHHHHHHcCCCEEEeeccHHHHHhhhcccccccCcCCCcHHHHHHHHHHHHH
Confidence 455666667788654 369999999999999999999999865310 0010 011124568888999999999
Q ss_pred HhCCCeEEEEccCCCCCHHHHHH
Q 004491 688 RINPDAIVLCHGGPISSPSEAEF 710 (749)
Q Consensus 688 ~~~pdii~l~hGGPi~~p~d~~~ 710 (749)
+.+.+..+| |.-+.+++++..
T Consensus 215 ~~~~~t~im--~ASfrn~~~v~~ 235 (318)
T PRK05269 215 KHGYKTVVM--GASFRNTGQILE 235 (318)
T ss_pred HcCCCceEE--eeccCCHHHHHH
Confidence 988888888 445555554443
No 437
>cd07943 DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-terminal catalytic TIM barrel domain. 4-hydroxy 2-ketovalerate aldolase (Also known as 4-hydroxy-2-ketovalerate aldolase and 4-hydroxy-2-oxopentanoate aldolase (HOA)) converts 4-hydroxy-2-oxopentanoate to acetaldehyde and pyruvate, the penultimate step in the meta-cleavage pathway for the degradation of phenols, cresols and catechol. This family includes the Escherichia coli MhpE aldolase, the Pseudomonas DmpG aldolase, and the Burkholderia xenovorans BphI pyruvate aldolase. In Pseudomonas, the DmpG aldolase tightly associates with a dehydrogenase (DmpF ) and is inactive without it. HOA has a canonical TIM-barrel fold with a C-terminal extension that forms a funnel leading to the active site. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate
Probab=62.21 E-value=1.9e+02 Score=30.64 Aligned_cols=85 Identities=18% Similarity=0.080 Sum_probs=50.1
Q ss_pred hhcCCCCCCceEEeeccCCCCCCHHHHHHHHHHcCccceecCCcccccchhhhhhhhhcCCchHHHHHHHHHHHHcCCcc
Q 004491 552 EVLPVVKEVPVLAGVCGTDPFRRVDYFLKQLESIGFFGVQNFPTVGLFDGNFRQNLEETGMGYGLEVEMIDKAHKMGLLT 631 (749)
Q Consensus 552 eilp~v~~tPViaGv~atDP~~~~~~~l~~lk~~Gf~GV~NfPTvgliDG~fR~~LEe~G~gy~~EVemi~~A~~~gl~T 631 (749)
.+.+.++++.+.+- + +|-+.-.+.+++.++.|...|.=|=.+. .. ..=.++++.|+++|+.+
T Consensus 67 ~~~~~~~~~~~~~~-~--~~~~~~~~~i~~a~~~g~~~iri~~~~s----~~-----------~~~~~~i~~ak~~G~~v 128 (263)
T cd07943 67 AAAEALKQAKLGVL-L--LPGIGTVDDLKMAADLGVDVVRVATHCT----EA-----------DVSEQHIGAARKLGMDV 128 (263)
T ss_pred HHHHhccCCEEEEE-e--cCCccCHHHHHHHHHcCCCEEEEEechh----hH-----------HHHHHHHHHHHHCCCeE
Confidence 33344455554333 2 2323335778999998887654221111 11 13367999999999876
Q ss_pred cccc-----cCHHHH----HHHHhccCcEEEe
Q 004491 632 TPYA-----FNEGEA----VKMAKAGADIIVA 654 (749)
Q Consensus 632 ~~yv-----f~~eqa----~~Ma~AGaDiiv~ 654 (749)
..++ .+++.- +++.++|+|.|+.
T Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~~G~d~i~l 160 (263)
T cd07943 129 VGFLMMSHMASPEELAEQAKLMESYGADCVYV 160 (263)
T ss_pred EEEEEeccCCCHHHHHHHHHHHHHcCCCEEEE
Confidence 4443 566654 5556789998864
No 438
>PRK12448 dihydroxy-acid dehydratase; Provisional
Probab=62.10 E-value=14 Score=44.15 Aligned_cols=376 Identities=17% Similarity=0.228 Sum_probs=210.2
Q ss_pred CCCcEEEE-eccCCchHHHHHH-------HHHHHhcCccEEEEecCCCc--------hH------------HHHHHHHcC
Q 004491 207 KEKCTVGI-TMFGVTTPCVNAV-------KERLEKEGYETMVFHATGVG--------GR------------AMEALVKEG 258 (749)
Q Consensus 207 ~~kp~Igi-TMFGvTTp~V~~~-------r~~Le~~GyEvlVFHATG~G--------Gr------------AME~Li~eG 258 (749)
-+||.||| +.|.--+||=.+. ++-..+.|--...|+..+++ |+ +.|-+++.-
T Consensus 31 ~~kP~IgI~ns~~e~~pch~hl~~la~~vk~gi~~aGG~p~ef~ti~v~Dgit~g~~GM~ySL~SRelIAdsiE~~~~a~ 110 (615)
T PRK12448 31 FGKPIIAVVNSFTQFVPGHVHLKDLGQLVAREIEAAGGVAKEFNTIAVDDGIAMGHGGMLYSLPSRELIADSVEYMVNAH 110 (615)
T ss_pred hCCCEEEEEeccccCcCchhhHHHHHHHHHHHHHHcCCeeeEeccCcccCCcCcCCccceechhhHHHHHHHHHHHhhCC
Confidence 46999997 4677777986554 44455568889999877652 22 237778888
Q ss_pred CceEEEeCchhhhhhhhhCCccCCCCchhhhhhhcCCCeEEecCccccccCCCCCCCCccc--cC--Cceeee--cCcce
Q 004491 259 FIQGVLDITTTEVADYVVGGVMACDSSRFDATIEKKIPLVLSVGALDMVNFGAKDTIPSKF--QR--RKIHVH--NQQVS 332 (749)
Q Consensus 259 ~~~gVlDlTttElaD~l~GGv~saGp~RL~AA~~~GIPqVVspGalDmVnFG~~dtvPe~f--~~--R~~~~H--Np~vT 332 (749)
.|||++=|.- ||-. -|.=|-||+|.+||.|+++|+-=+ |-+| ++ +++-.. -.+..
T Consensus 111 ~~Dg~V~i~~---CDK~-------~PG~lMaaarlniPsi~v~gGpm~---------~G~~~~~~~g~~~~~~~~~~~~~ 171 (615)
T PRK12448 111 CADAMVCISN---CDKI-------TPGMLMAALRLNIPVVFVSGGPME---------AGKTKLSDKIIKLDLVDAMVAAA 171 (615)
T ss_pred CcceEEEecc---CCCc-------hHHHHHHHHhcCCCEEEEeCCCcC---------CCccccCCCCCCcchHHHHHHHH
Confidence 8999886653 3433 456799999999999999997433 2222 11 221100 00122
Q ss_pred EEecCHHHHHHHHHHHHHHHccCCCCeEEEeeCCCCcccCCCCCCCCChhhhHHHHHHHHHhcccCCCceEEecCCCCCC
Q 004491 333 LMRTTVDENKKFAAFIANKLNQSSSKIRLCLPQNGISALDAPGKPFYDPEATGTLISELRTLIQTNEDRQVKVYPHNIND 412 (749)
Q Consensus 333 lmRTt~eE~~~ig~~iA~kLn~a~gpv~vllP~~G~S~lD~~G~pf~DPeAd~al~~~L~~~l~~~~~~~v~~~d~hIND 412 (749)
.=+.+.||..++-+ |.++++ |-. .-+|=...-+.+.++|==.|+++..++ ..+-.-
T Consensus 172 ~G~i~~eel~~~E~------~a~p~~--------GsC------~gmgTANTM~~l~EaLGl~LPGsa~ip----A~~~~r 227 (615)
T PRK12448 172 DPSVSDEDVAQIER------SACPTC--------GSC------SGMFTANSMNCLTEALGLSLPGNGSLL----ATHADR 227 (615)
T ss_pred cCCCCHHHHHHHHH------hcCCCC--------Ccc------ccCCHHHHHHHHHHHHhcCCCCCcCCC----CCCHHH
Confidence 22556666654322 233332 211 335666777888999988888754221 112233
Q ss_pred HHHHHHHHHHHHHHHhccccccCCccccccccccccccccccCCCcccccCCCCCCCCCCcccccHHHHHHHHHHHhhcC
Q 004491 413 SEFADALVDSFLEISGKNLMAFSSAHHVSCERHEDSVSNIYSSSHGTICYSPSNFPDARPETLQRTQAILSKLKYQIDKG 492 (749)
Q Consensus 413 p~FA~a~a~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~il~~L~~~i~~~ 492 (749)
.+.++++.+++++++++... +.++ +-+|-.++||+.+...++--.+-|
T Consensus 228 ~~~a~~ag~~iv~lv~~~~~-------------------------------~~~~-~i~prdIlT~~a~~NAi~v~~A~G 275 (615)
T PRK12448 228 KQLFLEAGRRIVELAKRYYE-------------------------------QDDE-SVLPRSIATKAAFENAMTLDIAMG 275 (615)
T ss_pred HHHHHHHHHHHHHHHHHhhc-------------------------------cccC-CCCHHHcCCHHHHHHHHHHccccC
Confidence 45777788888888865311 1111 356778899988887776544332
Q ss_pred CCeEEecccc--chhhhhhhhcCCcEEEEeccccccccCCccccccccccCchHHHHHhhhhhcCCCCCCceEEeeccC-
Q 004491 493 LPIIGAGAGT--GISAKFEEAGGVDLIVLYNSGRFRMAGRGSLAGLLPFADANAVVLEMANEVLPVVKEVPVLAGVCGT- 569 (749)
Q Consensus 493 ~piig~gaGt--GlsAk~ae~gGaDli~~ynsGrfR~~G~~SlagllpygdaN~iv~e~~~eilp~v~~tPViaGv~at- 569 (749)
. ..=+ =|. -.|.++|+||=+ +-..+| -++||+|+-+-..
T Consensus 276 G-----STNavlHL~-AIA~eaGi~l~l-----------------------------~dfd~i---s~~vP~L~~~~P~~ 317 (615)
T PRK12448 276 G-----STNTVLHLL-AAAQEAEVDFTM-----------------------------ADIDRL---SRKVPCLCKVAPNT 317 (615)
T ss_pred c-----cccHHHHHH-HHHHhcCCCCCH-----------------------------HHHHHH---hccCCeeEEecCCC
Confidence 1 0000 011 245666777521 111222 2458999999888
Q ss_pred CCCC--------CHHHHHHHHHHcCccceecCCcccccchhhhhhhhhcCC--chHHHHHHHHHHHHcCCcccccccCHH
Q 004491 570 DPFR--------RVDYFLKQLESIGFFGVQNFPTVGLFDGNFRQNLEETGM--GYGLEVEMIDKAHKMGLLTTPYAFNEG 639 (749)
Q Consensus 570 DP~~--------~~~~~l~~lk~~Gf~GV~NfPTvgliDG~fR~~LEe~G~--gy~~EVemi~~A~~~gl~T~~yvf~~e 639 (749)
-+|. -+...+++|.+.|+= =..-|||.. ..++++|++.-. ..+.+++...++.-.++-|+- .|+..
T Consensus 318 G~~~~~d~~~AGGvpavmkeL~~~glL-~~D~~TVtG--~Tl~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 393 (615)
T PRK12448 318 QKYHMEDVHRAGGIMGILGELDRAGLL-HTDVPTVHG--LTLGEALDQWDIMRTQDEAVKEFFRAAPGGIRTTV-AFSQD 393 (615)
T ss_pred CcccHHHHHHcCCHHHHHHHHHHCCCC-CCCCCCcCC--cCHHHHHhccccccCCchhhhhhhhhcCCCccccc-ccccc
Confidence 6763 245568899998651 013466654 578999988632 112345555554433322221 11111
Q ss_pred HHH-----------------HHHhccCcEEEeccCCCcccccc---------------cccccCHHHHHHHHHHHHHHHH
Q 004491 640 EAV-----------------KMAKAGADIIVAHMGLTTSGSIG---------------AKTALSLDESVDRVQAIADAAH 687 (749)
Q Consensus 640 qa~-----------------~Ma~AGaDiiv~h~GlT~gG~~G---------------a~~~~sl~~~~~~~~~i~~aa~ 687 (749)
+.. -..+.| -+-|.+=.|--.|.+= |.--.|-+++.+.+++ .
T Consensus 394 ~~~~~~~~~~~~~VIr~~~~P~~~~G-gl~vL~GNLAP~GAViK~sav~~~~~~~~GpA~VFdsee~a~~ai~~-----g 467 (615)
T PRK12448 394 CRWDSLDTDRENGCIRSVEHAYSKDG-GLAVLYGNIAEDGCIVKTAGVDESILKFTGPARVFESQDDAVEAILG-----G 467 (615)
T ss_pred cccccccccccCCEECCcccccCCCC-CEEEeecCCCCCCeEEEecccCCcceEEEEeEEEECCHHHHHHHHhc-----C
Confidence 111 111112 2444455555444331 1112366777766654 4
Q ss_pred Hh-CCCeEEEEccCCCCCH
Q 004491 688 RI-NPDAIVLCHGGPISSP 705 (749)
Q Consensus 688 ~~-~pdii~l~hGGPi~~p 705 (749)
++ .-||+|+=|=||.-.|
T Consensus 468 ~I~~gdVvVIRyeGPkGgP 486 (615)
T PRK12448 468 KVKAGDVVVIRYEGPKGGP 486 (615)
T ss_pred CCCCCeEEEEeCCCCCCCc
Confidence 44 4578888999999844
No 439
>PRK13405 bchH magnesium chelatase subunit H; Provisional
Probab=62.09 E-value=29 Score=44.88 Aligned_cols=90 Identities=27% Similarity=0.358 Sum_probs=63.9
Q ss_pred CCcEEEEeccCCc-----hHHHHHHHHHHHhcCccEEEEecCCCch-HHHHHHHH---cCCceEEEeCchhhhhhhhhCC
Q 004491 208 EKCTVGITMFGVT-----TPCVNAVKERLEKEGYETMVFHATGVGG-RAMEALVK---EGFIQGVLDITTTEVADYVVGG 278 (749)
Q Consensus 208 ~kp~IgiTMFGvT-----Tp~V~~~r~~Le~~GyEvlVFHATG~GG-rAME~Li~---eG~~~gVlDlTttElaD~l~GG 278 (749)
++|+|||..+... |+.++++.+.||++|+.|+.+-++|.-+ .++|++.. .-.+|+|+.+|- . -|+||
T Consensus 245 ~~p~Vgil~~r~~~~~~d~~~~d~lI~~lE~~G~~vipvf~~gl~~~~~v~~~~~~~~~~~vDaiI~~tg--F--~l~gg 320 (1209)
T PRK13405 245 AKGTVGLLLMRSYVLAGNTAHYDGVIEALEARGLRVVPAFASGLDGRPAIEAYFMKDGRPTVDAVVSLTG--F--SLVGG 320 (1209)
T ss_pred CCCeEEEEEehhhhhcCCcHHHHHHHHHHHHCCCeEEEEEecCccchHHHHHHHhccCCCCccEEEEcCc--c--cccCC
Confidence 4899999866433 4778999999999999999988888855 78899873 346899998873 1 24555
Q ss_pred ccCCCCc-hhhhhhhcCCCeEEec
Q 004491 279 VMACDSS-RFDATIEKKIPLVLSV 301 (749)
Q Consensus 279 v~saGp~-RL~AA~~~GIPqVVsp 301 (749)
-....++ .-+.--+.+||++...
T Consensus 321 pa~~~~~~a~~~L~~lnVPvl~~~ 344 (1209)
T PRK13405 321 PAYNDSAAAEEILARLDVPYLAAH 344 (1209)
T ss_pred cccCcchhHHHHHHHCCCCEEEEe
Confidence 3322222 2333457899998754
No 440
>cd00959 DeoC 2-deoxyribose-5-phosphate aldolase (DERA) of the DeoC family. DERA belongs to the class I aldolases and catalyzes a reversible aldol reaction between acetaldehyde and glyceraldehyde 3-phosphate to generate 2-deoxyribose 5-phosphate. DERA is unique in catalyzing the aldol reaction between two aldehydes, and its broad substrate specificity confers considerable utility as a biocatalyst, offering an environmentally benign alternative to chiral transition metal catalysis of the asymmetric aldol reaction.
Probab=62.06 E-value=73 Score=32.53 Aligned_cols=142 Identities=20% Similarity=0.211 Sum_probs=74.6
Q ss_pred HHHHHHHHHHhhcCCCeEEeccccch----------hhhhhhhcCCcEEEE-eccccccccCCccccccccccCchHHHH
Q 004491 479 QAILSKLKYQIDKGLPIIGAGAGTGI----------SAKFEEAGGVDLIVL-YNSGRFRMAGRGSLAGLLPFADANAVVL 547 (749)
Q Consensus 479 ~~il~~L~~~i~~~~piig~gaGtGl----------sAk~ae~gGaDli~~-ynsGrfR~~G~~SlagllpygdaN~iv~ 547 (749)
...+++.++.++.....+.+..|... .++-|-+-|||-|-+ .|-|.+.- ++-|.+..
T Consensus 38 p~~v~~~~~~l~~~~~~v~~~~~fp~g~~~~~~k~~eve~A~~~GAdevdvv~~~g~~~~------------~~~~~~~~ 105 (203)
T cd00959 38 PCFVPLAREALKGSGVKVCTVIGFPLGATTTEVKVAEAREAIADGADEIDMVINIGALKS------------GDYEAVYE 105 (203)
T ss_pred HHHHHHHHHHcCCCCcEEEEEEecCCCCCcHHHHHHHHHHHHHcCCCEEEEeecHHHHhC------------CCHHHHHH
Confidence 34455555555544444444443222 255567789998765 56554431 34455555
Q ss_pred HhhhhhcCCCCCCceEEeeccCCCCC--CHHHHHHHHHHcCccceecCCcccccchhhhhhhhhcCCchH------HHHH
Q 004491 548 EMANEVLPVVKEVPVLAGVCGTDPFR--RVDYFLKQLESIGFFGVQNFPTVGLFDGNFRQNLEETGMGYG------LEVE 619 (749)
Q Consensus 548 e~~~eilp~v~~tPViaGv~atDP~~--~~~~~l~~lk~~Gf~GV~NfPTvgliDG~fR~~LEe~G~gy~------~EVe 619 (749)
|++ ++.-..++.|+.. +..+.+.. .+.+--+-..+.|-.-|. |.-||. ..|+
T Consensus 106 ei~-~v~~~~~g~~lkv-I~e~~~l~~~~i~~a~ria~e~GaD~IK------------------TsTG~~~~~at~~~v~ 165 (203)
T cd00959 106 EIA-AVVEACGGAPLKV-ILETGLLTDEEIIKACEIAIEAGADFIK------------------TSTGFGPGGATVEDVK 165 (203)
T ss_pred HHH-HHHHhcCCCeEEE-EEecCCCCHHHHHHHHHHHHHhCCCEEE------------------cCCCCCCCCCCHHHHH
Confidence 555 2223333678655 55554443 122222333344443332 333444 5566
Q ss_pred HHHHHHH--cCCcccccccCHHHHHHHHhccCcEE
Q 004491 620 MIDKAHK--MGLLTTPYAFNEGEAVKMAKAGADII 652 (749)
Q Consensus 620 mi~~A~~--~gl~T~~yvf~~eqa~~Ma~AGaDii 652 (749)
.|+++-+ .++.--+=+-+.+|+.+|.++|||-|
T Consensus 166 ~~~~~~~~~v~ik~aGGikt~~~~l~~~~~g~~ri 200 (203)
T cd00959 166 LMKEAVGGRVGVKAAGGIRTLEDALAMIEAGATRI 200 (203)
T ss_pred HHHHHhCCCceEEEeCCCCCHHHHHHHHHhChhhc
Confidence 6666654 33444444567899999999999866
No 441
>PRK02227 hypothetical protein; Provisional
Probab=62.01 E-value=2.3e+02 Score=30.55 Aligned_cols=157 Identities=17% Similarity=0.174 Sum_probs=101.0
Q ss_pred HHHHHHHHHhhcCCCeEEecc----ccchhhhh---hhhcCCcEEEEeccccccccCCccccccccccCchHHHHHh---
Q 004491 480 AILSKLKYQIDKGLPIIGAGA----GTGISAKF---EEAGGVDLIVLYNSGRFRMAGRGSLAGLLPFADANAVVLEM--- 549 (749)
Q Consensus 480 ~il~~L~~~i~~~~piig~ga----GtGlsAk~---ae~gGaDli~~ynsGrfR~~G~~SlagllpygdaN~iv~e~--- 549 (749)
.+++.+++.+..++|+-...- -.|..+.. +...|+|||=+ |+.+..+.-+.+.-|
T Consensus 40 ~vir~Iv~~~~~~~pvSAtiGD~p~~p~~~~~aa~~~a~~GvDyVKv---------------Gl~~~~~~~~~~~~~~~v 104 (238)
T PRK02227 40 WVIREIVAAVPGRKPVSATIGDVPYKPGTISLAALGAAATGADYVKV---------------GLYGGKTAEEAVEVMKAV 104 (238)
T ss_pred HHHHHHHHHhCCCCCceeeccCCCCCchHHHHHHHHHHhhCCCEEEE---------------cCCCCCcHHHHHHHHHHH
Confidence 356667777777777754221 22333333 33479998842 333344443333333
Q ss_pred hhhhcCCCCCCceEEeeccCCC-C--CCHHHHHHHHHHcCccceecCCcccccc------hhhhhhhhhcCCchHHHHHH
Q 004491 550 ANEVLPVVKEVPVLAGVCGTDP-F--RRVDYFLKQLESIGFFGVQNFPTVGLFD------GNFRQNLEETGMGYGLEVEM 620 (749)
Q Consensus 550 ~~eilp~v~~tPViaGv~atDP-~--~~~~~~l~~lk~~Gf~GV~NfPTvgliD------G~fR~~LEe~G~gy~~EVem 620 (749)
.+.+-....+..|++-..+-.. . .+-...++-+++.||.|+ ++| +++-+. |+.+.=-++
T Consensus 105 ~~a~~~~~~~~~vVav~yaD~~r~~~~~~~~l~~~a~~aGf~g~-------MlDTa~Kdg~~Lfd~-----l~~~~L~~F 172 (238)
T PRK02227 105 VRAVKDLDPGKIVVAAGYADAHRVGSVSPLSLPAIAADAGFDGA-------MLDTAIKDGKSLFDH-----MDEEELAEF 172 (238)
T ss_pred HHhhhhcCCCCeEEEEEecccccccCCChHHHHHHHHHcCCCEE-------EEecccCCCcchHhh-----CCHHHHHHH
Confidence 2344445557778888776632 1 133467788899999997 455 333333 455555689
Q ss_pred HHHHHHcCCcc-cccccCHHHHHHHHhccCcEEEeccCCCcccc
Q 004491 621 IDKAHKMGLLT-TPYAFNEGEAVKMAKAGADIIVAHMGLTTSGS 663 (749)
Q Consensus 621 i~~A~~~gl~T-~~yvf~~eqa~~Ma~AGaDiiv~h~GlT~gG~ 663 (749)
++.||+.||++ ++=.-..++-..+..-++|++=.-=.+..||.
T Consensus 173 v~~ar~~Gl~~gLAGSL~~~dip~L~~l~pD~lGfRgavC~g~d 216 (238)
T PRK02227 173 VAEARSHGLMSALAGSLKFEDIPALKRLGPDILGVRGAVCGGGD 216 (238)
T ss_pred HHHHHHcccHhHhcccCchhhHHHHHhcCCCEEEechhccCCCC
Confidence 99999999986 45556679999999999999988888887774
No 442
>cd06294 PBP1_ycjW_transcription_regulator_like Ligand-binding domain of uncharacterized transcription regulator ycjW which is a member of the LacI-GalR family repressors. This group includes the ligand-binding domain of uncharacterized transcription regulator ycjW which is a member of the LacI-GalR family repressors that are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=61.57 E-value=1.8e+02 Score=29.15 Aligned_cols=116 Identities=16% Similarity=0.236 Sum_probs=60.5
Q ss_pred HHHHHHHHHhcCccE---EEEecC---CCchHHHHHHHHcC-CceEEEeCchhhhhhhhhCCccCCCCchhhhhhhcCC-
Q 004491 224 VNAVKERLEKEGYET---MVFHAT---GVGGRAMEALVKEG-FIQGVLDITTTEVADYVVGGVMACDSSRFDATIEKKI- 295 (749)
Q Consensus 224 V~~~r~~Le~~GyEv---lVFHAT---G~GGrAME~Li~eG-~~~gVlDlTttElaD~l~GGv~saGp~RL~AA~~~GI- 295 (749)
....++.|+++|.+. ++.+.. -.+-++|+++++++ .++||+=.. .+.+- |+ +.+.-++|+
T Consensus 141 ~~gf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~~~-d~~a~----g~-------~~al~~~g~~ 208 (270)
T cd06294 141 LQGYKQALEDHGIPDRNEVIISLDFSEEGGYKALKKLLEQHPRPTAIVATD-DLLAL----GV-------LKVLNELGLK 208 (270)
T ss_pred HHHHHHHHHHcCCCCCcceEEecCCchHHHHHHHHHHHhCCCCCCEEEECC-hHHHH----HH-------HHHHHHcCCC
Confidence 445567777777421 222222 12568999998765 488877432 12222 22 233444554
Q ss_pred -CeEEecCccccccCCCCCCCCccccCCceeeecCcceEEecCHHHHH-HHHHHHHHHHccC-CCCeEEEeeC
Q 004491 296 -PLVLSVGALDMVNFGAKDTIPSKFQRRKIHVHNQQVSLMRTTVDENK-KFAAFIANKLNQS-SSKIRLCLPQ 365 (749)
Q Consensus 296 -PqVVspGalDmVnFG~~dtvPe~f~~R~~~~HNp~vTlmRTt~eE~~-~ig~~iA~kLn~a-~gpv~vllP~ 365 (749)
|.=+++-+.|-..+. ....|.+|.++.++++.- ...+.+.++|..- ..+-.+.+|.
T Consensus 209 iP~dv~vig~d~~~~~--------------~~~~p~l~~i~~~~~~~g~~a~~~l~~~l~~~~~~~~~~~~~~ 267 (270)
T cd06294 209 VPEDLSIIGFNNSILS--------------ELAHPPLTSVDINPRELGYEAAELLIDLIENPKTLPKRIIIPH 267 (270)
T ss_pred CCcceEEEeeCChhhh--------------hccCCCceEeccCHHHHHHHHHHHHHHHccCCCCCcceeecCC
Confidence 543333333332211 124567899999997754 4555666666542 2344555653
No 443
>TIGR02955 TMAO_TorT TMAO reductase system periplasmic protein TorT. Members of this family are the periplasmic protein TorT which, together with the the TorS/TorR histidine kinase/response regulator system, regulates expression of the torCAD operon for trimethylamine N-oxide reductase (TMAO reductase). It appears to bind an inducer for TMAO reductase, and shows homology to a periplasmic D-ribose binding protein.
Probab=61.56 E-value=2.1e+02 Score=29.89 Aligned_cols=64 Identities=19% Similarity=0.134 Sum_probs=36.3
Q ss_pred HHHHHHHHhcCccEEEEecCCCch-----HHHHHHHHcCCceEEEeCchhhhhhhhhCCccCCCCchhhhhhhcCCCeEE
Q 004491 225 NAVKERLEKEGYETMVFHATGVGG-----RAMEALVKEGFIQGVLDITTTEVADYVVGGVMACDSSRFDATIEKKIPLVL 299 (749)
Q Consensus 225 ~~~r~~Le~~GyEvlVFHATG~GG-----rAME~Li~eG~~~gVlDlTttElaD~l~GGv~saGp~RL~AA~~~GIPqVV 299 (749)
..+.+.++++||+++++...+... ...+.|+ +..+||++=.+. . . ..-.+.+..+ +.|||.|+
T Consensus 19 ~gi~~~a~~~g~~v~~~~~~~~~~~~~~~~~i~~l~-~~~vDgiIi~~~-~-~--------~~~~~~l~~~-~~~iPvV~ 86 (295)
T TIGR02955 19 YGMVEQAKHLGVELKVLEAGGYPNLDKQLAQIEQCK-SWGADAILLGTV-S-P--------EALNHDLAQL-TKSIPVFA 86 (295)
T ss_pred HHHHHHHHHhCCEEEEEcCCCCCCHHHHHHHHHHHH-HcCCCEEEEecC-C-h--------hhhhHHHHHH-hcCCCEEE
Confidence 344556667899999987654332 2444444 455799973321 1 0 0001334444 56999987
Q ss_pred e
Q 004491 300 S 300 (749)
Q Consensus 300 s 300 (749)
.
T Consensus 87 ~ 87 (295)
T TIGR02955 87 L 87 (295)
T ss_pred E
Confidence 4
No 444
>PRK14024 phosphoribosyl isomerase A; Provisional
Probab=61.48 E-value=36 Score=35.65 Aligned_cols=164 Identities=14% Similarity=0.116 Sum_probs=96.0
Q ss_pred HHHHHHHHHHhhcCCCe-EEeccccchhhhhhhhcCCcEEEEeccccccccCCccccccccccCchHHHHHhhhhhcCCC
Q 004491 479 QAILSKLKYQIDKGLPI-IGAGAGTGISAKFEEAGGVDLIVLYNSGRFRMAGRGSLAGLLPFADANAVVLEMANEVLPVV 557 (749)
Q Consensus 479 ~~il~~L~~~i~~~~pi-ig~gaGtGlsAk~ae~gGaDli~~ynsGrfR~~G~~SlagllpygdaN~iv~e~~~eilp~v 557 (749)
.++++++.+.+ +.|+ +|+|.-+--.++..-..|||-++ ++|.-++- -.-..+++.++.+.+...
T Consensus 64 ~~~i~~i~~~~--~~pv~vgGGirs~edv~~~l~~Ga~kvv-iGs~~l~~-----------p~l~~~i~~~~~~~i~vs- 128 (241)
T PRK14024 64 RELLAEVVGKL--DVKVELSGGIRDDESLEAALATGCARVN-IGTAALEN-----------PEWCARVIAEHGDRVAVG- 128 (241)
T ss_pred HHHHHHHHHHc--CCCEEEcCCCCCHHHHHHHHHCCCCEEE-ECchHhCC-----------HHHHHHHHHHhhhhEEEE-
Confidence 36777777766 4555 67888888889999999999864 45544331 011223333443333211
Q ss_pred CCCceEEe---eccCC-CCCCHHHHHHHHHHcCccceecCCcccccchhhhhhhhhcCCchHHHHHHHHHHHH---cCCc
Q 004491 558 KEVPVLAG---VCGTD-PFRRVDYFLKQLESIGFFGVQNFPTVGLFDGNFRQNLEETGMGYGLEVEMIDKAHK---MGLL 630 (749)
Q Consensus 558 ~~tPViaG---v~atD-P~~~~~~~l~~lk~~Gf~GV~NfPTvgliDG~fR~~LEe~G~gy~~EVemi~~A~~---~gl~ 630 (749)
+|+--| +.+++ --.+..+|++++.+.|+..+.=-+ + -| +.+.-|++ .++|++..+ .-+.
T Consensus 129 --ld~~~~~v~~~Gw~~~~~~~~~~~~~l~~~G~~~iiv~~----~---~~---~g~~~G~d--~~~i~~i~~~~~ipvi 194 (241)
T PRK14024 129 --LDVRGHTLAARGWTRDGGDLWEVLERLDSAGCSRYVVTD----V---TK---DGTLTGPN--LELLREVCARTDAPVV 194 (241)
T ss_pred --EEEeccEeccCCeeecCccHHHHHHHHHhcCCCEEEEEe----e---cC---CCCccCCC--HHHHHHHHhhCCCCEE
Confidence 122111 12322 235778999999999998774221 1 11 11223443 445555444 3444
Q ss_pred ccccccCHHHHHHHHh---ccCcEEEeccCCCcccccccccccCHHHHHHH
Q 004491 631 TTPYAFNEGEAVKMAK---AGADIIVAHMGLTTSGSIGAKTALSLDESVDR 678 (749)
Q Consensus 631 T~~yvf~~eqa~~Ma~---AGaDiiv~h~GlT~gG~~Ga~~~~sl~~~~~~ 678 (749)
.-.=+++.++++++.+ .|||-+++--++-.| ..+++++.+.
T Consensus 195 asGGi~s~~D~~~l~~~~~~GvdgV~igra~~~g-------~~~~~~~~~~ 238 (241)
T PRK14024 195 ASGGVSSLDDLRALAELVPLGVEGAIVGKALYAG-------AFTLPEALAV 238 (241)
T ss_pred EeCCCCCHHHHHHHhhhccCCccEEEEeHHHHcC-------CCCHHHHHHH
Confidence 5556799999999864 599977766555544 4788887654
No 445
>cd08604 GDPD_SHV3_repeat_2 Glycerophosphodiester phosphodiesterase domain repeat 2 of glycerophosphodiester phosphodiesterase-like protein SHV3 and SHV3-like proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) repeat 2 present in glycerophosphodiester phosphodiesterase (GP-GDE)-like protein SHV3 and SHV3-like proteins (SVLs), which may play important an role in cell wall organization. The prototype of this family is a glycosylphosphatidylinositol (GPI) anchored protein SHV3 encoded by shaven3 (shv3) gene from Arabidopsis thaliana. Members in this family show sequence homology to bacterial GP-GDEs (EC 3.1.4.46) that catalyze the hydrolysis of various glycerophosphodiesters, and produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. Both, SHV3 and SVLs, have two tandemly repeated GDPD domains whose biochemical functions remain unclear. The residues essential for interactions with the substrates and calcium ions in bacterial GP
Probab=61.47 E-value=17 Score=39.41 Aligned_cols=37 Identities=14% Similarity=0.170 Sum_probs=31.5
Q ss_pred HHHHHHHHcCCcccccccCHH---------------HHHHHHhccCcEEEec
Q 004491 619 EMIDKAHKMGLLTTPYAFNEG---------------EAVKMAKAGADIIVAH 655 (749)
Q Consensus 619 emi~~A~~~gl~T~~yvf~~e---------------qa~~Ma~AGaDiiv~h 655 (749)
++++.||+.|+...+|.+|.+ .++.+.+.|+|-|+..
T Consensus 241 ~~v~~a~~~Gl~v~vwTvn~~~~~~~~~~~~~~~~~~~~~~~~~GVdgIiTD 292 (300)
T cd08604 241 NVVEKLQSANLTVYVEVLRNEFVSLAFDFFADPTVEINSYVQGAGVDGFITE 292 (300)
T ss_pred HHHHHHHHCCCEEEEEEecCCccccchhccCCHHHHHHHHHHHcCCCEEEec
Confidence 799999999999999999843 4566778999999865
No 446
>cd07950 Gallate_Doxase_N The N-terminal domain of the Class III extradiol dioxygenase, Gallate Dioxygenase, which catalyzes the oxidization and subsequent ring-opening of gallate. Gallate Dioxygenase catalyzes the oxidization and subsequent ring-opening of gallate, an intermediate in the degradation of the aromatic compound, syringate. The reaction product of gallate dioxygenase is 4-oxalomesaconate. The amino acid sequence of the N-terminal and C-terminal regions of gallate dioxygenase exhibits homology with the sequence of PCA 4,5-dioxygenase B (catalytic) and A subunits, respectively. The enzyme is estimated to be a homodimer according to the Escherichia coli enzyme. LigAB-like enzymes are usually composed of two subunits, designated A and B, which form a tetramer composed of two copies of each subunit. In this subfamily, the subunits A and B are fused to make a single polypeptide chain. The dimer interface for this subfamily may resemble the tetramer interface of classical LigAB en
Probab=61.26 E-value=65 Score=34.89 Aligned_cols=178 Identities=13% Similarity=0.090 Sum_probs=100.6
Q ss_pred chHHHHHHHHHHHhcCccEEEEec----CCCchHHHHHHHHcCCceEEEeCchhhhhhhhhCC--ccC-CCCc----hhh
Q 004491 220 TTPCVNAVKERLEKEGYETMVFHA----TGVGGRAMEALVKEGFIQGVLDITTTEVADYVVGG--VMA-CDSS----RFD 288 (749)
Q Consensus 220 TTp~V~~~r~~Le~~GyEvlVFHA----TG~GGrAME~Li~eG~~~gVlDlTttElaD~l~GG--v~s-aGp~----RL~ 288 (749)
|-.+..++++++++..-||+|.=. +...--.|- .|. |-.-++.|..|.-++- ++. .|.. ++.
T Consensus 33 ~~~a~~~~~~~i~~~~PD~iVvi~~dH~~~f~~d~~p------~f~-Ig~~~~~~~~d~~~~~~~~~~~~g~~~LA~~i~ 105 (277)
T cd07950 33 IFDGYEPVKQWLAEQKPDVLFMVYNDHVTSFFFDHYS------AFA-LGVGDSYEVADEGGGPRDLPPIRGHAALAQHIA 105 (277)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEEcCcHHHHhccccCC------cEE-EEecccccccccccCCccCCCCCCCHHHHHHHH
Confidence 457788899999988899988644 443211111 222 2223344555542220 111 2232 332
Q ss_pred -hhhhcCCCeEEecCc-cccccCCCCCCCCccccCCceeeec-CcceE-Ee------cCHHHHHHHHHHHHHHHccCC-C
Q 004491 289 -ATIEKKIPLVLSVGA-LDMVNFGAKDTIPSKFQRRKIHVHN-QQVSL-MR------TTVDENKKFAAFIANKLNQSS-S 357 (749)
Q Consensus 289 -AA~~~GIPqVVspGa-lDmVnFG~~dtvPe~f~~R~~~~HN-p~vTl-mR------Tt~eE~~~ig~~iA~kLn~a~-g 357 (749)
.+.+.|+|...+..- +| -|. .+|=+|-........ |.|-+ +. .+++++.++|+.|++-+++.. .
T Consensus 106 ~~~~~~g~~~~~~~~~~lD---HG~--~vPL~~l~p~~~~~~~~vVpi~~~~~~~~l~~~~~~~~lG~al~~~i~~~~~d 180 (277)
T cd07950 106 ESLVADEFDLTFFQDKPLD---HGC--FSPLSLLLPHEDGWPVKVVPLQVGVLQFPLPTARRCYKLGQALRRAIESYPED 180 (277)
T ss_pred HHHHhcCCCeeeccCCCCC---cee--eeeHHHhCcccccCCCceEEEEEEeEecCCCCHHHHHHHHHHHHHHHHhcCcC
Confidence 233779998876432 33 332 244444332211000 11111 11 289999999999999998763 4
Q ss_pred CeEEEeeCCCCcccCCCCCC--CCChhhhHHHHHHHHHhcccCCCceEEecCCCCCCHHHHHHH
Q 004491 358 KIRLCLPQNGISALDAPGKP--FYDPEATGTLISELRTLIQTNEDRQVKVYPHNINDSEFADAL 419 (749)
Q Consensus 358 pv~vllP~~G~S~lD~~G~p--f~DPeAd~al~~~L~~~l~~~~~~~v~~~d~hINDp~FA~a~ 419 (749)
.-.++|=.||+|+.=. +.| |.+|+-|+.|.+.|++-++ .+ .+++++++.+.+
T Consensus 181 ~rv~iIaSG~lSH~l~-~~~~g~~~~~~D~~f~~~l~~d~~-----~l----~~~~~~~~~~~a 234 (277)
T cd07950 181 LKVAVVGTGGLSHQVH-GERAGFNNTEWDMEFLDLIENDPE-----SL----AAMTHADYATLG 234 (277)
T ss_pred CCEEEEEcCccccCCC-CCCCCCCCHHHHHHHHHHHHhCHH-----HH----HcCCHHHHHHHc
Confidence 4567899999999854 333 4577889999999985221 12 356666665544
No 447
>cd08583 PI-PLCc_GDPD_SF_unchar1 Uncharacterized hypothetical proteins similar to the catalytic domains of Phosphoinositide-specific phospholipaseand Glycerophosphodiester phosphodiesterases. This subfamily corresponds to a group of uncharacterized hypothetical proteins similar to the catalytic domains of Phosphoinositide-specific phospholipase C (PI-PLC), and glycerophosphodiester phosphodiesterases (GP-GDE), and also sphingomyelinases D (SMases D) and similar proteins. They hydrolyze the 3'-5' phosphodiester bonds in different substrates, utilizing a similar mechanism of general base and acid catalysis involving two conserved histidine residues.
Probab=61.09 E-value=10 Score=39.10 Aligned_cols=91 Identities=21% Similarity=0.223 Sum_probs=57.3
Q ss_pred chHHHHHhhhhhcCCCCCCceEEeeccCCCCCCHHHHHHHHHHcCccceecCCcccccchhhhhhhhhcCCchHHHHHHH
Q 004491 542 ANAVVLEMANEVLPVVKEVPVLAGVCGTDPFRRVDYFLKQLESIGFFGVQNFPTVGLFDGNFRQNLEETGMGYGLEVEMI 621 (749)
Q Consensus 542 aN~iv~e~~~eilp~v~~tPViaGv~atDP~~~~~~~l~~lk~~Gf~GV~NfPTvgliDG~fR~~LEe~G~gy~~EVemi 621 (749)
-|.-.++..+++.|.. +.++.+.-.. ....+..++.++..|..++. .+ .. . +. -+++
T Consensus 142 F~~~~L~~~~~~~p~~---~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-~~-~~--------~-------~~--~~~v 198 (237)
T cd08583 142 YNEEMYEAIMSIYPFK---SVIYTLYRQD-SIRLDEIIAFCYENGIKAVT-IS-KN--------Y-------VN--DKLI 198 (237)
T ss_pred cCHHHHHHHHHhCCCc---ceeeEecccc-ccchHHHHHHHHHcCCcEEE-ec-hh--------h-------cC--HHHH
Confidence 3444555666666642 1222221111 12234455666777776644 22 11 0 11 2789
Q ss_pred HHHHHcCCcccccccC-HHHHHHHHhccCcEEEec
Q 004491 622 DKAHKMGLLTTPYAFN-EGEAVKMAKAGADIIVAH 655 (749)
Q Consensus 622 ~~A~~~gl~T~~yvf~-~eqa~~Ma~AGaDiiv~h 655 (749)
+.||+.|+...+|..| ++++++|.+.|+|.|+..
T Consensus 199 ~~~~~~Gl~v~vwTVn~~~~~~~l~~~GVdgiiTD 233 (237)
T cd08583 199 EKLNKAGIYVYVYTINDLKDAQEYKKLGVYGIYTD 233 (237)
T ss_pred HHHHHCCCEEEEEeCCCHHHHHHHHHcCCCEEEeC
Confidence 9999999999999999 789999999999999853
No 448
>TIGR02417 fruct_sucro_rep D-fructose-responsive transcription factor. Members of this family belong the lacI helix-turn-helix family (pfam00356) of DNA-binding transcriptional regulators. All members are from the proteobacteria. Characterized members act as positive and negative transcriptional regulators of fructose and sucrose transport and metabolism. Sucrose is a disaccharide composed of fructose and glucose; D-fructose-1-phosphate rather than an intact sucrose moiety has been shown to act as the inducer.
Probab=61.02 E-value=45 Score=35.13 Aligned_cols=80 Identities=10% Similarity=0.242 Sum_probs=50.8
Q ss_pred CcEEEEeccCCchHHH----HHHHHHHHhcCccEEEEecCCCch---HHHHHHHHcCCceEEEeCchhhhhhhhhCCccC
Q 004491 209 KCTVGITMFGVTTPCV----NAVKERLEKEGYETMVFHATGVGG---RAMEALVKEGFIQGVLDITTTEVADYVVGGVMA 281 (749)
Q Consensus 209 kp~IgiTMFGvTTp~V----~~~r~~Le~~GyEvlVFHATG~GG---rAME~Li~eG~~~gVlDlTttElaD~l~GGv~s 281 (749)
...||+-.-..+.|.. ..+.+.+++.||.++++.....-. +..+.|+. ..+||++=..+..
T Consensus 60 ~~~Igvi~~~~~~~~~~~~~~~i~~~~~~~gy~~~i~~~~~~~~~~~~~~~~l~~-~~vdgiIi~~~~~----------- 127 (327)
T TIGR02417 60 SRTIGLVIPDLENYSYARIAKELEQQCREAGYQLLIACSDDNPDQEKVVIENLLA-RQVDALIVASCMP----------- 127 (327)
T ss_pred CceEEEEeCCCCCccHHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHHH-cCCCEEEEeCCCC-----------
Confidence 4589987766666654 455566667899999887654333 23445544 5689988544311
Q ss_pred CCCchhhhhhhcCCCeEEe
Q 004491 282 CDSSRFDATIEKKIPLVLS 300 (749)
Q Consensus 282 aGp~RL~AA~~~GIPqVVs 300 (749)
..++.+....+.|||.|+.
T Consensus 128 ~~~~~~~~l~~~~iPvV~~ 146 (327)
T TIGR02417 128 PEDAYYQKLQNEGLPVVAL 146 (327)
T ss_pred CChHHHHHHHhcCCCEEEE
Confidence 1234466667789998864
No 449
>cd08570 GDPD_YPL206cp_fungi Glycerophosphodiester phosphodiesterase domain of Saccharomyces cerevisiae YPL206cp and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in Saccharomyces cerevisiae YPL206cp and uncharacterized hypothetical homologs existing in fungi. The product of S. cerevisiae ORF YPL206c (PGC1), YPL206cp (Pgc1p), displays homology to bacterial and mammalian glycerophosphodiester phosphodiesterases (GP-GDE, EC 3.1.4.46), which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. S. cerevisiae YPL206cp is an integral membrane protein with a single GDPD domain following by a short hydrophobic C-terminal tail that may function as a membrane anchor. This protein plays an essential role in the regulation of the cardiolipin (CL) biosynthetic pathway in yeast by removing the excess phosphatidylglycerol (PG) content of membranes via a phospholip
Probab=60.91 E-value=10 Score=39.02 Aligned_cols=36 Identities=17% Similarity=0.249 Sum_probs=33.8
Q ss_pred HHHHHHHHcCCcccccccC-HHHHHHHHhccCcEEEe
Q 004491 619 EMIDKAHKMGLLTTPYAFN-EGEAVKMAKAGADIIVA 654 (749)
Q Consensus 619 emi~~A~~~gl~T~~yvf~-~eqa~~Ma~AGaDiiv~ 654 (749)
++++.||++|+...+|.+| ++++++|.+.|+|-|+.
T Consensus 195 ~~v~~~~~~gl~v~~wTvn~~~~~~~l~~~gvdgiiT 231 (234)
T cd08570 195 AFLPELKKNGKKVFVWTVNTEEDMRYAIRLGVDGVIT 231 (234)
T ss_pred HHHHHHHHCCCEEEEEecCCHHHHHHHHHCCCCEEEe
Confidence 8999999999999999999 79999999999999874
No 450
>cd00423 Pterin_binding Pterin binding enzymes. This family includes dihydropteroate synthase (DHPS) and cobalamin-dependent methyltransferases such as methyltetrahydrofolate, corrinoid iron-sulfur protein methyltransferase (MeTr) and methionine synthase (MetH). DHPS, a functional homodimer, catalyzes the condensation of p-aminobenzoic acid (pABA) in the de novo biosynthesis of folate, which is an essential cofactor in both nucleic acid and protein biosynthesis. Prokaryotes (and some lower eukaryotes) must synthesize folate de novo, while higher eukaryotes are able to utilize dietary folate and therefore lack DHPS. Sulfonamide drugs, which are substrate analogs of pABA, target DHPS. Cobalamin-dependent methyltransferases catalyze the transfer of a methyl group via a methyl- cob(III)amide intermediate. These include MeTr, a functional heterodimer, and the folate binding domain of MetH.
Probab=60.86 E-value=97 Score=32.86 Aligned_cols=93 Identities=24% Similarity=0.204 Sum_probs=56.7
Q ss_pred HHHHHHHHhccCcEEEeccCCCcccccccccccCHHHHHHHHHHHHHHHHHhCCCeEEEEccCCCCCHHHHHHHHhhCCC
Q 004491 638 EGEAVKMAKAGADIIVAHMGLTTSGSIGAKTALSLDESVDRVQAIADAAHRINPDAIVLCHGGPISSPSEAEFILKRTKG 717 (749)
Q Consensus 638 ~eqa~~Ma~AGaDiiv~h~GlT~gG~~Ga~~~~sl~~~~~~~~~i~~aa~~~~pdii~l~hGGPi~~p~d~~~~l~~~~~ 717 (749)
.++|++|.++|||||=+..+-|.-|. +..|.++=.+++..+.++.++...-.|.+.- ..|+-+++.|+..
T Consensus 27 ~~~a~~~~~~GAdiIDvG~~st~p~~----~~~~~~~E~~rl~~~v~~l~~~~~~piSIDT----~~~~v~~aaL~~g-- 96 (258)
T cd00423 27 LEHARRMVEEGADIIDIGGESTRPGA----EPVSVEEELERVIPVLRALAGEPDVPISVDT----FNAEVAEAALKAG-- 96 (258)
T ss_pred HHHHHHHHHCCCCEEEECCCcCCCCC----CcCCHHHHHHHHHHHHHHHHhcCCCeEEEeC----CcHHHHHHHHHhC--
Confidence 47889999999999999988886543 3566666666666666666544222233322 3677777777663
Q ss_pred ccEEecCcccccchHHHHHHHHHHhh
Q 004491 718 VHGFYGASSMERLPVEQAITSTMRQY 743 (749)
Q Consensus 718 ~~Gf~g~Ss~ERlP~E~ai~~~~~~F 743 (749)
.-++..=|-|+.. ..+-+.+++|
T Consensus 97 -~~iINdis~~~~~--~~~~~l~~~~ 119 (258)
T cd00423 97 -ADIINDVSGGRGD--PEMAPLAAEY 119 (258)
T ss_pred -CCEEEeCCCCCCC--hHHHHHHHHc
Confidence 2345444444433 2334455554
No 451
>cd01541 PBP1_AraR Ligand-binding domain of DNA transcription repressor specific for arabinose (AraR) which is a member of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressor specific for arabinose (AraR) which is a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of AraR is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which i
Probab=60.81 E-value=34 Score=34.66 Aligned_cols=71 Identities=15% Similarity=0.299 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHhcCccEEEEecCCCch---HHHHHHHHcCCceEEEeCchhhhhhhhhCCccCCCCchhhhhhhcCCCeE
Q 004491 222 PCVNAVKERLEKEGYETMVFHATGVGG---RAMEALVKEGFIQGVLDITTTEVADYVVGGVMACDSSRFDATIEKKIPLV 298 (749)
Q Consensus 222 p~V~~~r~~Le~~GyEvlVFHATG~GG---rAME~Li~eG~~~gVlDlTttElaD~l~GGv~saGp~RL~AA~~~GIPqV 298 (749)
...+.+.+.+++.||+++++.+..--- .++|.|+..+ +||++=..++.- .....++.+..+.++|||.|
T Consensus 16 ~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~i~~l~~~~-vdgii~~~~~~~-------~~~~~~~~~~~~~~~~ipvV 87 (273)
T cd01541 16 SIIRGIESVLSEKGYSLLLASTNNDPERERKCLENMLSQG-IDGLIIEPTKSA-------LPNPNIDLYLKLEKLGIPYV 87 (273)
T ss_pred HHHHHHHHHHHHcCCEEEEEeCCCCHHHHHHHHHHHHHcC-CCEEEEeccccc-------cccccHHHHHHHHHCCCCEE
Confidence 345566777778899999877643222 3567777765 799983221100 00112256778888999987
Q ss_pred Ee
Q 004491 299 LS 300 (749)
Q Consensus 299 Vs 300 (749)
..
T Consensus 88 ~~ 89 (273)
T cd01541 88 FI 89 (273)
T ss_pred EE
Confidence 64
No 452
>PRK06843 inosine 5-monophosphate dehydrogenase; Validated
Probab=60.79 E-value=56 Score=37.55 Aligned_cols=65 Identities=17% Similarity=0.242 Sum_probs=44.0
Q ss_pred HHHHHHHHhccCcEEEeccCCCcccccccccccCHHHHHHHHHHHHHHHHHhCCCeEEEEccCCCCCHHHHHHHHhhCCC
Q 004491 638 EGEAVKMAKAGADIIVAHMGLTTSGSIGAKTALSLDESVDRVQAIADAAHRINPDAIVLCHGGPISSPSEAEFILKRTKG 717 (749)
Q Consensus 638 ~eqa~~Ma~AGaDiiv~h~GlT~gG~~Ga~~~~sl~~~~~~~~~i~~aa~~~~pdii~l~hGGPi~~p~d~~~~l~~~~~ 717 (749)
.+.++++.+||+|+||+-..- |. ..++ .++.+..++.-||+.++ .|-|.|+++++++++. +
T Consensus 155 ~~~v~~lv~aGvDvI~iD~a~---g~-----~~~~-------~~~v~~ik~~~p~~~vi--~g~V~T~e~a~~l~~a--G 215 (404)
T PRK06843 155 IERVEELVKAHVDILVIDSAH---GH-----STRI-------IELVKKIKTKYPNLDLI--AGNIVTKEAALDLISV--G 215 (404)
T ss_pred HHHHHHHHhcCCCEEEEECCC---CC-----ChhH-------HHHHHHHHhhCCCCcEE--EEecCCHHHHHHHHHc--C
Confidence 379999999999999985332 11 1222 23333345555787766 3578999999999964 5
Q ss_pred ccEE
Q 004491 718 VHGF 721 (749)
Q Consensus 718 ~~Gf 721 (749)
+|+.
T Consensus 216 aD~I 219 (404)
T PRK06843 216 ADCL 219 (404)
T ss_pred CCEE
Confidence 6665
No 453
>COG0859 RfaF ADP-heptose:LPS heptosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=60.79 E-value=31 Score=37.68 Aligned_cols=149 Identities=22% Similarity=0.192 Sum_probs=86.8
Q ss_pred CCCCCHHHHHHHHHHcCccceecCCcccc---------------cc-hhhhhhhhhcCCc------hHHHHHHHH-HHHH
Q 004491 570 DPFRRVDYFLKQLESIGFFGVQNFPTVGL---------------FD-GNFRQNLEETGMG------YGLEVEMID-KAHK 626 (749)
Q Consensus 570 DP~~~~~~~l~~lk~~Gf~GV~NfPTvgl---------------iD-G~fR~~LEe~G~g------y~~EVemi~-~A~~ 626 (749)
..+.++-.|.+.|++.-|.-|.|++..-- +| ++.|.-+-.--.. ++..||-.+ .+.+
T Consensus 65 ~~~~~~~~l~~~lr~~~yD~vidl~~~~ksa~l~~~~~~~~r~g~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 144 (334)
T COG0859 65 LGLKERLALLRTLRKERYDAVIDLQGLLKSALLALLLGIPFRIGFDKKSARELLLNKFYPRLDKPEGQHVVERYLALLED 144 (334)
T ss_pred cchHHHHHHHHHhhccCCCEEEECcccHHHHHHHHHhCCCcccccccccchhHHHHHhhhccCcccchhHHHHHHHHHHH
Confidence 35788999999999999999999874211 11 2222222211111 234444443 3455
Q ss_pred cCCcccc-----c--ccCHHHHHHH-HhccCcEEEeccCCCcccccccccccCHHHHHHHHHHHHHHHHHhCCCeEEEEc
Q 004491 627 MGLLTTP-----Y--AFNEGEAVKM-AKAGADIIVAHMGLTTSGSIGAKTALSLDESVDRVQAIADAAHRINPDAIVLCH 698 (749)
Q Consensus 627 ~gl~T~~-----y--vf~~eqa~~M-a~AGaDiiv~h~GlT~gG~~Ga~~~~sl~~~~~~~~~i~~aa~~~~pdii~l~h 698 (749)
.+....+ | .+..++...+ .+.+--.|+.|.| .+-|..+.++.+..++.++.+.+.. ..|+..
T Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~pg----~s~~~~K~wp~e~~~~l~~~l~~~~------~~Vvl~ 214 (334)
T COG0859 145 LGLYPPPEPQLDFPLPRPPIELAKNLAKFDRPYIVINPG----ASRGSAKRWPLEHYAELAELLIAKG------YQVVLF 214 (334)
T ss_pred hcCCCCCCCccCcccccCHHHHHHHHHhcCCCeEEEecc----ccccccCCCCHHHHHHHHHHHHHCC------CEEEEe
Confidence 5554442 1 2222222222 2222368888888 2334578999999998888875544 455556
Q ss_pred cCCCCCHHHHHHHHhhCCCccEEecCccccc
Q 004491 699 GGPISSPSEAEFILKRTKGVHGFYGASSMER 729 (749)
Q Consensus 699 GGPi~~p~d~~~~l~~~~~~~Gf~g~Ss~ER 729 (749)
||| .+-+-++++.+.+.....+.|-.|++.
T Consensus 215 g~~-~e~e~~~~i~~~~~~~~~l~~k~sL~e 244 (334)
T COG0859 215 GGP-DEEERAEEIAKGLPNAVILAGKTSLEE 244 (334)
T ss_pred cCh-HHHHHHHHHHHhcCCccccCCCCCHHH
Confidence 777 777778888877654333555555544
No 454
>PRK09054 phosphogluconate dehydratase; Validated
Probab=60.72 E-value=20 Score=42.90 Aligned_cols=304 Identities=14% Similarity=0.159 Sum_probs=176.4
Q ss_pred HHHHHHHhccccchhhhccccCCCCCCcEEEE-eccCCchHHHH-------HHHHHHHhcCccEEEE-ec--------CC
Q 004491 183 ANAGAAFAGMVVGRLERLRDFGASKEKCTVGI-TMFGVTTPCVN-------AVKERLEKEGYETMVF-HA--------TG 245 (749)
Q Consensus 183 ~NAA~AiaGMv~~~~~~~~~~~~~~~kp~Igi-TMFGvTTp~V~-------~~r~~Le~~GyEvlVF-HA--------TG 245 (749)
.|=|+++|++-...... -...+||.||| +.|.--+||=. .+++..++.|--..+| +. .|
T Consensus 43 ~n~ah~~a~~~~~~k~~----~~~~~kP~IgIvns~nd~~p~h~~l~~~~~~vk~~v~~aGg~~~~~Gg~pa~cDGit~G 118 (603)
T PRK09054 43 GNLAHGFAACGPEDKAA----LKAMTRPNIGIVTAYNDMLSAHQPYEHYPDIIKEAAREAGAVAQVAGGVPAMCDGVTQG 118 (603)
T ss_pred hhHHHHHhcCCHHHHHH----HHhcCCCEEEEEeccccCcCccccHHHHHHHHHHHHHHcCCccceeCCCCccCCCccCC
Confidence 46788888876532211 12357999997 56777778865 4555566667777888 44 34
Q ss_pred CchH------------HHHHHHHcCCceEEEeCchhhhhhhhhCCccCCCCchhhhhhhcC-CCeEEecCccccccCCCC
Q 004491 246 VGGR------------AMEALVKEGFIQGVLDITTTEVADYVVGGVMACDSSRFDATIEKK-IPLVLSVGALDMVNFGAK 312 (749)
Q Consensus 246 ~GGr------------AME~Li~eG~~~gVlDlTttElaD~l~GGv~saGp~RL~AA~~~G-IPqVVspGalDmVnFG~~ 312 (749)
.-|+ +.|-.++...|||++=|.- ||-. -|.=|-+|++.| ||.|++||+-=
T Consensus 119 ~~GM~~SL~SRdlIA~sie~~l~~~~fDg~v~lg~---CDKi-------vPG~lMaA~r~g~lP~ifV~gGpM------- 181 (603)
T PRK09054 119 QPGMELSLFSRDVIAMSTAVALSHNMFDAALLLGV---CDKI-------VPGLLIGALSFGHLPAIFVPAGPM------- 181 (603)
T ss_pred CcchhhhhhhHHHHHHHHHHHhhcCCcceEEEecc---CCCC-------cHHHHHHHHhcCCCCEEEEeCCCc-------
Confidence 4333 4467778888999886642 4444 456689999995 99999999632
Q ss_pred CCCCccccCCceeeecCcceEEecCHHHHHHHHHHHHHHHccCCCCeEEEeeCCCCcccCCCCCCCCChhhhHHHHHHHH
Q 004491 313 DTIPSKFQRRKIHVHNQQVSLMRTTVDENKKFAAFIANKLNQSSSKIRLCLPQNGISALDAPGKPFYDPEATGTLISELR 392 (749)
Q Consensus 313 dtvPe~f~~R~~~~HNp~vTlmRTt~eE~~~ig~~iA~kLn~a~gpv~vllP~~G~S~lD~~G~pf~DPeAd~al~~~L~ 392 (749)
.|-.++++++.... +...=+.+.||..++-. +.+++| |-. .-++=....+.+.++|=
T Consensus 182 --~~G~~~~e~~~~~~-~~a~G~i~~~el~~~E~------~a~ps~--------GtC------~~mgTANTm~~l~EalG 238 (603)
T PRK09054 182 --TSGLPNKEKARIRQ-LYAEGKVGRDELLEAES------ASYHSP--------GTC------TFYGTANSNQMLMEVMG 238 (603)
T ss_pred --CCCCCCCcceehHh-HHHcCCCCHHHHHHHHh------hcCCCC--------Ccc------cccChHHHHHHHHHHhc
Confidence 23345555441111 23333556666543321 122221 111 34566777888889998
Q ss_pred HhcccCCCceEEecCC-CCCCHHHHHHHHHHHHHHHhccccccCCccccccccccccccccccCCCcccccCCCCCCCCC
Q 004491 393 TLIQTNEDRQVKVYPH-NINDSEFADALVDSFLEISGKNLMAFSSAHHVSCERHEDSVSNIYSSSHGTICYSPSNFPDAR 471 (749)
Q Consensus 393 ~~l~~~~~~~v~~~d~-hINDp~FA~a~a~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 471 (749)
=.|+++.-+ |. +=.-.+.++.+.++..+|.++. .|-|
T Consensus 239 l~LPGsa~i-----pa~~~~R~~la~~ag~~i~~l~~~~-------------------------------------~~~~ 276 (603)
T PRK09054 239 LHLPGSSFV-----NPGTPLRDALTREAARRVLRLTALG-------------------------------------NDYT 276 (603)
T ss_pred CCCCCCCCC-----CCCCHHHHHHHHHHHHHHHHHHHhc-------------------------------------cCCC
Confidence 888875422 21 1112356777777777777541 1245
Q ss_pred C-cccccHHHHHHHHHHHhhcCCCeEEeccccchhhhhhhhcCCcEEEEeccccccccCCccccccccccCchHHHHHhh
Q 004491 472 P-ETLQRTQAILSKLKYQIDKGLPIIGAGAGTGISAKFEEAGGVDLIVLYNSGRFRMAGRGSLAGLLPFADANAVVLEMA 550 (749)
Q Consensus 472 ~-~~~~~r~~il~~L~~~i~~~~piig~gaGtGlsAk~ae~gGaDli~~ynsGrfR~~G~~SlagllpygdaN~iv~e~~ 550 (749)
| -.++||+.|...+.--.+-|.-.=.+ .=|.| .|.++|+||=+ .| .
T Consensus 277 P~~~Ilt~~af~NAi~~~~A~GGSTN~v---lHL~A-IA~~aGi~l~l---------------------~d--------f 323 (603)
T PRK09054 277 PIGEVVDEKAIVNGIVALLATGGSTNHT---IHLVA-MARAAGIILTW---------------------DD--------F 323 (603)
T ss_pred CchhhCCHHHHHHHHHHHhccCccccHH---HHHHH-HHHHcCCCCCH---------------------HH--------H
Confidence 5 66788888887776555432100000 00112 34556666422 11 1
Q ss_pred hhhcCCCCCCceEEeeccCCCCC--------CHHHHHHHHHHcCccceecCCcccccchhhhhhhhhcC
Q 004491 551 NEVLPVVKEVPVLAGVCGTDPFR--------RVDYFLKQLESIGFFGVQNFPTVGLFDGNFRQNLEETG 611 (749)
Q Consensus 551 ~eilp~v~~tPViaGv~atDP~~--------~~~~~l~~lk~~Gf~GV~NfPTvgliDG~fR~~LEe~G 611 (749)
.+| -+.||+|+=+..+-+|. -+...+++|.+.|+- =-.-+||.. -.+++++++.-
T Consensus 324 d~i---s~~vP~L~~v~P~G~~~~~df~~AGGvp~v~keL~~~GlL-h~D~~TVtG--~tl~e~~~~~~ 386 (603)
T PRK09054 324 SDL---SDVVPLLARVYPNGPADVNHFQAAGGMAFLIRELLDAGLL-HEDVNTVAG--FGLRRYTQEPF 386 (603)
T ss_pred HHH---hccCCcceeecCCCcchHHHHHHccCHHHHHHHHHHCCCc-CCCCCCcCC--CCHHHHHhccc
Confidence 121 13589999988888873 245568899988752 113355543 25788887643
No 455
>PRK04169 geranylgeranylglyceryl phosphate synthase-like protein; Reviewed
Probab=60.62 E-value=20 Score=38.13 Aligned_cols=136 Identities=18% Similarity=0.185 Sum_probs=71.2
Q ss_pred eccCCCCCCHHHHHHHHHHcCccceecCCcccccchhhhhhhhhcCCchHHHHHHHHHHHHcCCcccccccCHHHHHHHH
Q 004491 566 VCGTDPFRRVDYFLKQLESIGFFGVQNFPTVGLFDGNFRQNLEETGMGYGLEVEMIDKAHKMGLLTTPYAFNEGEAVKMA 645 (749)
Q Consensus 566 v~atDP~~~~~~~l~~lk~~Gf~GV~NfPTvgliDG~fR~~LEe~G~gy~~EVemi~~A~~~gl~T~~yvf~~eqa~~Ma 645 (749)
+|+.||+--+....+-++..-..|+.=.||-=++=+.=. +-|+- .-|.+-=++.+|..+.+
T Consensus 86 lNs~~~~~iig~~~~~~~~~~~~~le~ip~gYiv~~~~~-----------------~va~~--~~~~~~~~~~~~~~~~~ 146 (232)
T PRK04169 86 LNSRNPYWIIGAHVEAAPIIKKGGLEVIPEGYIVLNPGS-----------------KVAVV--GTAAPIPLDKPDIAAYA 146 (232)
T ss_pred ecCCCcchHhhHHHHHHHHHhhcCcEECceEEEEECCCC-----------------eeeee--eccccCCCChHHHHHHH
Confidence 567777777777666666654444444454333221000 00000 11122235566666665
Q ss_pred hccCcEEEeccCCCcccccccccccCHHHHHHHHHHHHHHHHHhCCCeEEEEccCCCCCHHHHHHHHhhCCCccEEecCc
Q 004491 646 KAGADIIVAHMGLTTSGSIGAKTALSLDESVDRVQAIADAAHRINPDAIVLCHGGPISSPSEAEFILKRTKGVHGFYGAS 725 (749)
Q Consensus 646 ~AGaDiiv~h~GlT~gG~~Ga~~~~sl~~~~~~~~~i~~aa~~~~pdii~l~hGGPi~~p~d~~~~l~~~~~~~Gf~g~S 725 (749)
...+..+-.++..+..|+ ++....+. +.+ +++.+ .-. ...++.||-|.++++++.+++. +++|.+-||
T Consensus 147 ~lA~~~~g~~~vYle~gs-~~g~~~~~-e~I---~~v~~----~~~-~~pvivGGGIrs~e~a~~~l~~--GAD~VVVGS 214 (232)
T PRK04169 147 ALAAEYLGMPIVYLEYGG-GAGDPVPP-EMV---KAVKK----ALD-ITPLIYGGGIRSPEQARELMAA--GADTIVVGN 214 (232)
T ss_pred HHHHHHcCCCeEEEECCC-CCCCCCCH-HHH---HHHHH----hcC-CCcEEEECCCCCHHHHHHHHHh--CCCEEEECh
Confidence 544333333333333333 23333332 222 22222 112 2145669999999999998854 689999999
Q ss_pred ccccchH
Q 004491 726 SMERLPV 732 (749)
Q Consensus 726 s~ERlP~ 732 (749)
.+++=|-
T Consensus 215 ai~~d~~ 221 (232)
T PRK04169 215 IIEEDPK 221 (232)
T ss_pred HHhhCHH
Confidence 9997665
No 456
>COG2200 Rtn c-di-GMP phosphodiesterase class I (EAL domain) [Signal transduction mechanisms]
Probab=60.57 E-value=19 Score=38.08 Aligned_cols=92 Identities=18% Similarity=0.296 Sum_probs=74.9
Q ss_pred ceEEeeccCCCCCC---HHHHHHHHHHcCc-----------cc---eecC-CcccccchhhhhhhhhcCCchHHHHHHHH
Q 004491 561 PVLAGVCGTDPFRR---VDYFLKQLESIGF-----------FG---VQNF-PTVGLFDGNFRQNLEETGMGYGLEVEMID 622 (749)
Q Consensus 561 PViaGv~atDP~~~---~~~~l~~lk~~Gf-----------~G---V~Nf-PTvgliDG~fR~~LEe~G~gy~~EVemi~ 622 (749)
-+++=+--+.+..+ ...++++|++.|| ++ +..| |..--||+.|=.++.........==.++.
T Consensus 121 ~l~lEitE~~~~~~~~~~~~~l~~L~~~G~~ialDDFGtG~ssl~~L~~l~~d~iKID~~fi~~i~~~~~~~~iv~~iv~ 200 (256)
T COG2200 121 RLVLEITESALIDDLDTALALLRQLRELGVRIALDDFGTGYSSLSYLKRLPPDILKIDRSFVRDLETDARDQAIVRAIVA 200 (256)
T ss_pred eEEEEEeCchhhcCHHHHHHHHHHHHHCCCeEEEECCCCCHHHHHHHhhCCCCeEEECHHHHhhcccCcchHHHHHHHHH
Confidence 58888888887544 5678999999995 23 2344 67888999999999988887755556889
Q ss_pred HHHHcCCcccc-cccCHHHHHHHHhccCcEE
Q 004491 623 KAHKMGLLTTP-YAFNEGEAVKMAKAGADII 652 (749)
Q Consensus 623 ~A~~~gl~T~~-yvf~~eqa~~Ma~AGaDii 652 (749)
.||++|+-+++ .|=|++|.+.+.+.|+|.+
T Consensus 201 la~~l~~~vvaEGVEt~~ql~~L~~~G~~~~ 231 (256)
T COG2200 201 LAHKLGLTVVAEGVETEEQLDLLRELGCDYL 231 (256)
T ss_pred HHHHCCCEEEEeecCCHHHHHHHHHcCCCeE
Confidence 99999999887 7889999999999999975
No 457
>COG0269 SgbH 3-hexulose-6-phosphate synthase and related proteins [Carbohydrate transport and metabolism]
Probab=60.55 E-value=1.1e+02 Score=32.68 Aligned_cols=98 Identities=16% Similarity=0.247 Sum_probs=65.7
Q ss_pred HHHHHHHHHcCCcccc---cccCHHHHHHHHh-ccCcEEEeccCCCcccccccccccCHHHHHHHHHHHHHHHHHhCCC-
Q 004491 618 VEMIDKAHKMGLLTTP---YAFNEGEAVKMAK-AGADIIVAHMGLTTSGSIGAKTALSLDESVDRVQAIADAAHRINPD- 692 (749)
Q Consensus 618 Vemi~~A~~~gl~T~~---yvf~~eqa~~Ma~-AGaDiiv~h~GlT~gG~~Ga~~~~sl~~~~~~~~~i~~aa~~~~pd- 692 (749)
...++.||+.|..+.. -++|++|+.+-.+ +|+|+++.|.|.-.-= .|.+ ++ .+-+ +..++..+.
T Consensus 96 ~~~i~~A~~~~~~v~iDl~~~~~~~~~~~~l~~~gvd~~~~H~g~D~q~-~G~~--~~-~~~l-------~~ik~~~~~g 164 (217)
T COG0269 96 KKAIKVAKEYGKEVQIDLIGVWDPEQRAKWLKELGVDQVILHRGRDAQA-AGKS--WG-EDDL-------EKIKKLSDLG 164 (217)
T ss_pred HHHHHHHHHcCCeEEEEeecCCCHHHHHHHHHHhCCCEEEEEecccHhh-cCCC--cc-HHHH-------HHHHHhhccC
Confidence 3568889999976643 4678888888887 9999999999976442 1211 22 1222 223343333
Q ss_pred eEEEEccCCCCCHHHHHHHHhhCCCccEEecCcccccc
Q 004491 693 AIVLCHGGPISSPSEAEFILKRTKGVHGFYGASSMERL 730 (749)
Q Consensus 693 ii~l~hGGPi~~p~d~~~~l~~~~~~~Gf~g~Ss~ERl 730 (749)
+.+=+-|| -+|++++.+.+. +++=|+-|+++=+-
T Consensus 165 ~~vAVaGG--I~~~~i~~~~~~--~~~ivIvGraIt~a 198 (217)
T COG0269 165 AKVAVAGG--ITPEDIPLFKGI--GADIVIVGRAITGA 198 (217)
T ss_pred ceEEEecC--CCHHHHHHHhcC--CCCEEEECchhcCC
Confidence 55556677 589999999855 36789988887543
No 458
>COG0214 SNZ1 Pyridoxine biosynthesis enzyme [Coenzyme metabolism]
Probab=60.47 E-value=21 Score=38.46 Aligned_cols=212 Identities=25% Similarity=0.388 Sum_probs=134.1
Q ss_pred HHHHHHHhhcCCCeEEeccccchhhhhhhhcCCcEEEEeccccccccCCccccccccccCchHHHHHhhhhhcCCCCCCc
Q 004491 482 LSKLKYQIDKGLPIIGAGAGTGISAKFEEAGGVDLIVLYNSGRFRMAGRGSLAGLLPFADANAVVLEMANEVLPVVKEVP 561 (749)
Q Consensus 482 l~~L~~~i~~~~piig~gaGtGlsAk~ae~gGaDli~~ynsGrfR~~G~~SlagllpygdaN~iv~e~~~eilp~v~~tP 561 (749)
+++=-.+.-+|.-|.=+ =+---||+||++||=-++++..=.+-+--.|-.|-+ .| -.+-+||+..|. +|
T Consensus 11 vK~g~a~m~KGGVIMDV--~n~EQA~IAE~aGAvAVMaLervPaDiR~aGGVaRM---aD-----p~~i~eim~aVs-IP 79 (296)
T COG0214 11 VKRGFAQMLKGGVIMDV--VNAEQARIAEEAGAVAVMALERVPADIRAAGGVARM---AD-----PKMIEEIMDAVS-IP 79 (296)
T ss_pred HHhhHHHHhcCCeEEEe--cCHHHHHHHHhcCceeEeehhhCcHHHHhccCcccc---CC-----HHHHHHHHHhcc-cc
Confidence 33333444445444443 345679999999999999885432221111111110 11 124468888885 99
Q ss_pred eEEeeccCCCCCCHHHHHHHHHHcCccceecCCcccccchhhhhhhhhcCCchHHHHHHHHHHH-----HcCCcccccc-
Q 004491 562 VLAGVCGTDPFRRVDYFLKQLESIGFFGVQNFPTVGLFDGNFRQNLEETGMGYGLEVEMIDKAH-----KMGLLTTPYA- 635 (749)
Q Consensus 562 ViaGv~atDP~~~~~~~l~~lk~~Gf~GV~NfPTvgliDG~fR~~LEe~G~gy~~EVemi~~A~-----~~gl~T~~yv- 635 (749)
|.|=+ .+.+|.+. +.||.-|.-|=-|=|.|--|- .+--||+|||
T Consensus 80 VMAKv-------RIGH~~EA-----------------------~iLealgVD~IDESEVLTPAD~~~Hi~K~~FtVPFVc 129 (296)
T COG0214 80 VMAKV-------RIGHFVEA-----------------------QILEALGVDMIDESEVLTPADEEFHINKWKFTVPFVC 129 (296)
T ss_pred eeeee-------ecchhHHH-----------------------HHHHHhCCCccccccccCCCchhhhcchhhcccceec
Confidence 99865 44455432 678888888888888876554 4678999997
Q ss_pred --cCHHHHHHHHhccCcEEEeccCCCcccccccccccCHHHHHHHHHHH----------------------------HHH
Q 004491 636 --FNEGEAVKMAKAGADIIVAHMGLTTSGSIGAKTALSLDESVDRVQAI----------------------------ADA 685 (749)
Q Consensus 636 --f~~eqa~~Ma~AGaDiiv~h~GlT~gG~~Ga~~~~sl~~~~~~~~~i----------------------------~~a 685 (749)
.|.-||.+=..-||-+| .|+|.-|..+ +-||++....| ...
T Consensus 130 GarnLgEAlRRI~EGAaMI------RTKGEaGTGn---v~eAVrHmr~i~~eI~~l~~~~edel~~~Ak~~~~p~elv~~ 200 (296)
T COG0214 130 GARNLGEALRRISEGAAMI------RTKGEAGTGN---VVEAVRHMRKINGEIRRLQSMTEDELYVVAKELQAPYELVKE 200 (296)
T ss_pred CcCcHHHHHHHHhhhHHHH------hcCCCCCCCc---HHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHhCChHHHHHH
Confidence 57788888888888776 4667766543 33444433322 223
Q ss_pred HHHhCCCeEEEEccCCCCCHHHHHHHHhhCCCccEEecCcccc--cchHH--HHHHHHHHhhcc
Q 004491 686 AHRINPDAIVLCHGGPISSPSEAEFILKRTKGVHGFYGASSME--RLPVE--QAITSTMRQYKS 745 (749)
Q Consensus 686 a~~~~pdii~l~hGGPi~~p~d~~~~l~~~~~~~Gf~g~Ss~E--RlP~E--~ai~~~~~~FK~ 745 (749)
.++...=.+|-+--|-|+||-|+.-+++- +++|-|-+|-+= .=|-+ +||.+.+..|.+
T Consensus 201 ~~~~grLPVvnFAAGGvATPADAALMM~L--GadGVFVGSGIFKS~~P~~~A~AIV~A~~~ydd 262 (296)
T COG0214 201 VAKLGRLPVVNFAAGGVATPADAALMMQL--GADGVFVGSGIFKSSNPEKRAKAIVEATTHYDD 262 (296)
T ss_pred HHHhCCCCeEeecccCcCChhHHHHHHHh--CCCeEEecccccCCCCHHHHHHHHHHHHHccCC
Confidence 33344445677777889999999999855 679988888652 12444 467777776654
No 459
>cd06311 PBP1_ABC_sugar_binding_like_3 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=60.33 E-value=2e+02 Score=29.22 Aligned_cols=78 Identities=12% Similarity=0.098 Sum_probs=43.3
Q ss_pred EEEeccCCchHHHHHHHHH----HHhc-----CccEEEEecCCCch---HHHHHHHHcCCceEEEeCchhhhhhhhhCCc
Q 004491 212 VGITMFGVTTPCVNAVKER----LEKE-----GYETMVFHATGVGG---RAMEALVKEGFIQGVLDITTTEVADYVVGGV 279 (749)
Q Consensus 212 IgiTMFGvTTp~V~~~r~~----Le~~-----GyEvlVFHATG~GG---rAME~Li~eG~~~gVlDlTttElaD~l~GGv 279 (749)
||+..-....|....+.+. +++. ||+++++.+..--- ...+.|+..+ +||++=... -
T Consensus 2 Ig~i~~~~~~~f~~~~~~gi~~~a~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~-vDgiii~~~----------~ 70 (274)
T cd06311 2 IGVSIPAADHGWTAGIVWHAQAAAKKLEAAYPDVEFILVTASNDTEQQNAQQDLLINRK-IDALVILPF----------E 70 (274)
T ss_pred eeeeccCCCCcHHHHHHHHHHHHHHHhhhhCCCeEEEEEcCCCCHHHHHHHHHHHHHcC-CCEEEEeCC----------C
Confidence 5555544555655544444 4444 78988876654322 1233344444 688873221 0
Q ss_pred cCCCCchhhhhhhcCCCeEEe
Q 004491 280 MACDSSRFDATIEKKIPLVLS 300 (749)
Q Consensus 280 ~saGp~RL~AA~~~GIPqVVs 300 (749)
..+-.+.+..+.++|||.|..
T Consensus 71 ~~~~~~~i~~~~~~gIpvV~~ 91 (274)
T cd06311 71 SAPLTQPVAKAKKAGIFVVVV 91 (274)
T ss_pred chhhHHHHHHHHHCCCeEEEE
Confidence 111224577888999998873
No 460
>PRK13585 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=60.25 E-value=1.2e+02 Score=31.24 Aligned_cols=175 Identities=17% Similarity=0.145 Sum_probs=0.0
Q ss_pred CCCCcccccHHHHHHHHHHHhhcCCCeEEeccccchhhhhhhhcCCcEEEEeccccccccCCccccccccccCchHHHHH
Q 004491 469 DARPETLQRTQAILSKLKYQIDKGLPIIGAGAGTGISAKFEEAGGVDLIVLYNSGRFRMAGRGSLAGLLPFADANAVVLE 548 (749)
Q Consensus 469 ~~~~~~~~~r~~il~~L~~~i~~~~piig~gaGtGlsAk~ae~gGaDli~~ynsGrfR~~G~~SlagllpygdaN~iv~e 548 (749)
|+..+.....-+.++.|.++. .-.-++|.|.-+=-.++.+-+.|||-++ .|..----.+
T Consensus 55 ~~~~~~~~~~~~~i~~i~~~~-~~~l~v~GGi~~~~~~~~~~~~Ga~~v~--------------------iGs~~~~~~~ 113 (241)
T PRK13585 55 DGAFEGERKNAEAIEKIIEAV-GVPVQLGGGIRSAEDAASLLDLGVDRVI--------------------LGTAAVENPE 113 (241)
T ss_pred hhhhcCCcccHHHHHHHHHHc-CCcEEEcCCcCCHHHHHHHHHcCCCEEE--------------------EChHHhhChH
Q ss_pred hhhhhcCCCCCCceEEeecc-----------CCCCCCHHHHHHHHHHcCccceecCCcccccchhhhhhhhhcCCchHHH
Q 004491 549 MANEVLPVVKEVPVLAGVCG-----------TDPFRRVDYFLKQLESIGFFGVQNFPTVGLFDGNFRQNLEETGMGYGLE 617 (749)
Q Consensus 549 ~~~eilp~v~~tPViaGv~a-----------tDP~~~~~~~l~~lk~~Gf~GV~NfPTvgliDG~fR~~LEe~G~gy~~E 617 (749)
...++......--++.++-. .++-.+...+.+++.+.|+..| +.|=.--||.. .|..++.
T Consensus 114 ~~~~i~~~~g~~~i~~sid~~~~~v~~~g~~~~~~~~~~~~~~~~~~~G~~~i--~~~~~~~~g~~------~g~~~~~- 184 (241)
T PRK13585 114 IVRELSEEFGSERVMVSLDAKDGEVVIKGWTEKTGYTPVEAAKRFEELGAGSI--LFTNVDVEGLL------EGVNTEP- 184 (241)
T ss_pred HHHHHHHHhCCCcEEEEEEeeCCEEEECCCcccCCCCHHHHHHHHHHcCCCEE--EEEeecCCCCc------CCCCHHH-
Q ss_pred HHHHHHHHHcCCcccccccCHHHHHHHHhccCcEEEeccCCCcccccccccccCHHHHHHHHH
Q 004491 618 VEMIDKAHKMGLLTTPYAFNEGEAVKMAKAGADIIVAHMGLTTSGSIGAKTALSLDESVDRVQ 680 (749)
Q Consensus 618 Vemi~~A~~~gl~T~~yvf~~eqa~~Ma~AGaDiiv~h~GlT~gG~~Ga~~~~sl~~~~~~~~ 680 (749)
++-++..-..-+....=+++.++++++.++|||-+++--++. +...++++++..+.
T Consensus 185 i~~i~~~~~iPvia~GGI~~~~di~~~~~~Ga~gv~vgsa~~-------~~~~~~~~~~~~~~ 240 (241)
T PRK13585 185 VKELVDSVDIPVIASGGVTTLDDLRALKEAGAAGVVVGSALY-------KGKFTLEEAIEAVK 240 (241)
T ss_pred HHHHHHhCCCCEEEeCCCCCHHHHHHHHHcCCCEEEEEHHHh-------cCCcCHHHHHHHhc
No 461
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=60.12 E-value=80 Score=32.60 Aligned_cols=144 Identities=12% Similarity=0.018 Sum_probs=87.6
Q ss_pred CCHHHHHHHHHHcCccceecC-CcccccchhhhhhhhhcCCchHHHHHHHHHHHHcC--CcccccccC-HHHHHHHHhcc
Q 004491 573 RRVDYFLKQLESIGFFGVQNF-PTVGLFDGNFRQNLEETGMGYGLEVEMIDKAHKMG--LLTTPYAFN-EGEAVKMAKAG 648 (749)
Q Consensus 573 ~~~~~~l~~lk~~Gf~GV~Nf-PTvgliDG~fR~~LEe~G~gy~~EVemi~~A~~~g--l~T~~yvf~-~eqa~~Ma~AG 648 (749)
-..-++++.|.+.|+.-|.-. |...-.. .. ...+.+.|+.+++.+ .--.+.+.+ .++++...++|
T Consensus 19 e~~~~i~~~L~~~GV~~IEvg~~~~~~~~-p~----------~~~~~~~i~~l~~~~~~~~~~~l~~~~~~~i~~a~~~g 87 (265)
T cd03174 19 EDKLEIAEALDEAGVDSIEVGSGASPKAV-PQ----------MEDDWEVLRAIRKLVPNVKLQALVRNREKGIERALEAG 87 (265)
T ss_pred HHHHHHHHHHHHcCCCEEEeccCcCcccc-cc----------CCCHHHHHHHHHhccCCcEEEEEccCchhhHHHHHhCC
Confidence 345567778888887655432 2221000 01 134667888888877 444466777 88999999999
Q ss_pred CcEEEeccCCCcccccccccccCHHHHHHHHHHHHHHHHHhCCCeEEEE-c-cCCCCCHHHHHHHHhhCC--CccEEecC
Q 004491 649 ADIIVAHMGLTTSGSIGAKTALSLDESVDRVQAIADAAHRINPDAIVLC-H-GGPISSPSEAEFILKRTK--GVHGFYGA 724 (749)
Q Consensus 649 aDiiv~h~GlT~gG~~Ga~~~~sl~~~~~~~~~i~~aa~~~~pdii~l~-h-GGPi~~p~d~~~~l~~~~--~~~Gf~g~ 724 (749)
+|.|-+-+.... -..=.+...+.++..+.+.+..+.+++..-++.+-. + .+|..+|+++..+++... +++.++=.
T Consensus 88 ~~~i~i~~~~s~-~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~~~~~~~~~~~~~~~~l~~~~~~~~~~g~~~i~l~ 166 (265)
T cd03174 88 VDEVRIFDSASE-THSRKNLNKSREEDLENAEEAIEAAKEAGLEVEGSLEDAFGCKTDPEYVLEVAKALEEAGADEISLK 166 (265)
T ss_pred cCEEEEEEecCH-HHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEEEeecCCCCCHHHHHHHHHHHHHcCCCEEEec
Confidence 998776665332 111112235677788888888888888777666554 3 334678888777765422 34555444
Q ss_pred cccc
Q 004491 725 SSME 728 (749)
Q Consensus 725 Ss~E 728 (749)
-+..
T Consensus 167 Dt~G 170 (265)
T cd03174 167 DTVG 170 (265)
T ss_pred hhcC
Confidence 4444
No 462
>PRK10415 tRNA-dihydrouridine synthase B; Provisional
Probab=59.84 E-value=64 Score=35.48 Aligned_cols=136 Identities=21% Similarity=0.255 Sum_probs=79.4
Q ss_pred hhhhhhhcCCcEEEEeccc-ccc---ccCCccccccccccCchHHHHHhhhhhcCCCCCCceEEee-ccCCCC-CCHHHH
Q 004491 505 SAKFEEAGGVDLIVLYNSG-RFR---MAGRGSLAGLLPFADANAVVLEMANEVLPVVKEVPVLAGV-CGTDPF-RRVDYF 578 (749)
Q Consensus 505 sAk~ae~gGaDli~~ynsG-rfR---~~G~~SlagllpygdaN~iv~e~~~eilp~v~~tPViaGv-~atDP~-~~~~~~ 578 (749)
.|+.+++.|+|.|= +|-| .-. -.|.||...-=| +.+.++.+.+.-.+ +.||..=+ .++|+. .+..+|
T Consensus 82 aa~~~~~~g~d~Id-lN~gCP~~~v~~~g~Gs~ll~~p-----~~~~eiv~av~~a~-d~pv~vKiR~G~~~~~~~~~~~ 154 (321)
T PRK10415 82 AARINVESGAQIID-INMGCPAKKVNRKLAGSALLQYP-----DLVKSILTEVVNAV-DVPVTLKIRTGWAPEHRNCVEI 154 (321)
T ss_pred HHHHHHHCCCCEEE-EeCCCCHHHHcCCCcccHHhcCH-----HHHHHHHHHHHHhc-CCceEEEEEccccCCcchHHHH
Confidence 46666678999765 5665 211 123344322212 55666665554444 57877544 234544 367899
Q ss_pred HHHHHHcCccceecCCcccccchhhhhhhhhcCCchHHHHHHHHHHHH---cCCcccccccCHHHHHHHHh-ccCcEEEe
Q 004491 579 LKQLESIGFFGVQNFPTVGLFDGNFRQNLEETGMGYGLEVEMIDKAHK---MGLLTTPYAFNEGEAVKMAK-AGADIIVA 654 (749)
Q Consensus 579 l~~lk~~Gf~GV~NfPTvgliDG~fR~~LEe~G~gy~~EVemi~~A~~---~gl~T~~yvf~~eqa~~Ma~-AGaDiiv~ 654 (749)
.+.+.+.|...|. +.|..|...- .|-.. .++|++.++ .-+...+=++|.++|++|.+ .|||.+-+
T Consensus 155 a~~le~~G~d~i~-------vh~rt~~~~~-~G~a~---~~~i~~ik~~~~iPVI~nGgI~s~~da~~~l~~~gadgVmi 223 (321)
T PRK10415 155 AQLAEDCGIQALT-------IHGRTRACLF-NGEAE---YDSIRAVKQKVSIPVIANGDITDPLKARAVLDYTGADALMI 223 (321)
T ss_pred HHHHHHhCCCEEE-------EecCcccccc-CCCcC---hHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHhccCCCEEEE
Confidence 9999999988773 2233332211 12111 345555544 44555666889999999996 79998876
Q ss_pred ccCC
Q 004491 655 HMGL 658 (749)
Q Consensus 655 h~Gl 658 (749)
-=|+
T Consensus 224 GR~~ 227 (321)
T PRK10415 224 GRAA 227 (321)
T ss_pred ChHh
Confidence 5443
No 463
>cd06295 PBP1_CelR Ligand binding domain of a transcription regulator of cellulose genes, CelR, which is highly homologous to the LacI-GalR family of bacterial transcription regulators. This group includes the ligand binding domain of a transcription regulator of cellulose genes, CelR, which is highly homologous to the LacI-GalR family of bacterial transcription regulators. The binding of CelR to the celE promoter is inhibited specifically by cellobiose. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn chang
Probab=59.84 E-value=36 Score=34.57 Aligned_cols=67 Identities=15% Similarity=0.266 Sum_probs=42.9
Q ss_pred HHHHHHHHHHHhcCccEEEEecCCCchHHHHHHHHcCCceEEEeCchhhhhhhhhCCccCCCCchhhhhhhcCCCeEEe
Q 004491 222 PCVNAVKERLEKEGYETMVFHATGVGGRAMEALVKEGFIQGVLDITTTEVADYVVGGVMACDSSRFDATIEKKIPLVLS 300 (749)
Q Consensus 222 p~V~~~r~~Le~~GyEvlVFHATG~GGrAME~Li~eG~~~gVlDlTttElaD~l~GGv~saGp~RL~AA~~~GIPqVVs 300 (749)
.....+.+.+++.||++.+|-...-==+.+++++.+..+||++=.+.. ..+..++.+.++|||.|+.
T Consensus 27 ~~~~gi~~~~~~~g~~~~v~~~~~~~~~~~~~~l~~~~~dgiii~~~~------------~~~~~~~~~~~~~ipvV~~ 93 (275)
T cd06295 27 SLLGGIADALAERGYDLLLSFVSSPDRDWLARYLASGRADGVILIGQH------------DQDPLPERLAETGLPFVVW 93 (275)
T ss_pred HHHHHHHHHHHHcCCEEEEEeCCchhHHHHHHHHHhCCCCEEEEeCCC------------CChHHHHHHHhCCCCEEEE
Confidence 345557778888999999986543201233444556778998754331 1123477788899999865
No 464
>cd02072 Glm_B12_BD B12 binding domain of glutamate mutase (Glm). Glutamate mutase catalysis the conversion of (S)-glutamate with (2S,3S)-3-methylaspartate. The rearrangement reaction is initiated by the extraction of a hydrogen from the protein-bound substrate by a 5'-desoxyadenosyl radical, which is generated by the homolytic cleavage of the organometallic bond of the cofactor B12. Glm is a heterotetrameric molecule consisting of two alpha and two epsilon polypeptide chains.
Probab=59.81 E-value=32 Score=33.50 Aligned_cols=72 Identities=15% Similarity=0.134 Sum_probs=48.4
Q ss_pred chhhhhhhhcCCcEEEEeccccccccCCccccccccccCch-HHHHHhhhhhcCCCCCCceEEeeccCCCCCCHHHHHHH
Q 004491 503 GISAKFEEAGGVDLIVLYNSGRFRMAGRGSLAGLLPFADAN-AVVLEMANEVLPVVKEVPVLAGVCGTDPFRRVDYFLKQ 581 (749)
Q Consensus 503 GlsAk~ae~gGaDli~~ynsGrfR~~G~~SlagllpygdaN-~iv~e~~~eilp~v~~tPViaGv~atDP~~~~~~~l~~ 581 (749)
--..+.|.+-++|+|. +++||.=...+ .-+.++.+|- -++++||+.|=...=|--+.++-.++
T Consensus 40 e~~v~aa~~~~adiVg--------------lS~L~t~~~~~~~~~~~~l~~~--gl~~v~vivGG~~~i~~~d~~~~~~~ 103 (128)
T cd02072 40 EEFIDAAIETDADAIL--------------VSSLYGHGEIDCKGLREKCDEA--GLKDILLYVGGNLVVGKQDFEDVEKR 103 (128)
T ss_pred HHHHHHHHHcCCCEEE--------------EeccccCCHHHHHHHHHHHHHC--CCCCCeEEEECCCCCChhhhHHHHHH
Confidence 3456777788999988 44554433322 2344444441 23578999886655677788888999
Q ss_pred HHHcCccce
Q 004491 582 LESIGFFGV 590 (749)
Q Consensus 582 lk~~Gf~GV 590 (749)
|+++||..|
T Consensus 104 L~~~Gv~~v 112 (128)
T cd02072 104 FKEMGFDRV 112 (128)
T ss_pred HHHcCCCEE
Confidence 999999876
No 465
>cd06320 PBP1_allose_binding Periplasmic allose-binding domain of bacterial transport systems that function as a primary receptor of active transport and chemotaxis. Periplasmic allose-binding domain of bacterial transport systems that function as a primary receptor of active transport and chemotaxis. The members of this group are belonging to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. Like other periplasmic receptors of the ABC-type transport systems, the allose-binding protein consists of two alpha/beta domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding.
Probab=59.74 E-value=22 Score=36.07 Aligned_cols=65 Identities=18% Similarity=0.215 Sum_probs=40.8
Q ss_pred HHHHHHHHHhcCccEEEEecCCCch-----HHHHHHHHcCCceEEEeCch-hhhhhhhhCCccCCCCchhhhhhhcCCCe
Q 004491 224 VNAVKERLEKEGYETMVFHATGVGG-----RAMEALVKEGFIQGVLDITT-TEVADYVVGGVMACDSSRFDATIEKKIPL 297 (749)
Q Consensus 224 V~~~r~~Le~~GyEvlVFHATG~GG-----rAME~Li~eG~~~gVlDlTt-tElaD~l~GGv~saGp~RL~AA~~~GIPq 297 (749)
++.+.+.++++||+++++-+..-+. ++.|+|++++ +||++=..+ .+- -+..++.+.++|||.
T Consensus 18 ~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~i~~l~~~~-vdgiIi~~~~~~~-----------~~~~~~~~~~~~iPv 85 (275)
T cd06320 18 KEGYENEAKKLGVSVDIQAAPSEGDQQGQLSIAENMINKG-YKGLLFSPISDVN-----------LVPAVERAKKKGIPV 85 (275)
T ss_pred HHHHHHHHHHhCCeEEEEccCCCCCHHHHHHHHHHHHHhC-CCEEEECCCChHH-----------hHHHHHHHHHCCCeE
Confidence 3455666777899999987654433 3466777775 688651111 111 123467778899999
Q ss_pred EEe
Q 004491 298 VLS 300 (749)
Q Consensus 298 VVs 300 (749)
|..
T Consensus 86 V~~ 88 (275)
T cd06320 86 VNV 88 (275)
T ss_pred EEE
Confidence 953
No 466
>cd02922 FCB2_FMN Flavocytochrome b2 (FCB2) FMN-binding domain. FCB2 (AKA L-lactate:cytochrome c oxidoreductase) is a respiratory enzyme located in the intermembrane space of fungal mitochondria which catalyzes the oxidation of L-lactate to pyruvate. FCB2 also participates in a short electron-transport chain involving cytochrome c and cytochrome oxidase which ultimately directs the reducing equivalents gained from L-lactate oxidation to oxygen, yielding one molecule of ATP for every L-lactate molecule consumed. FCB2 is composed of 2 domains: a C-terminal flavin-binding domain, which includes the active site for lacate oxidation, and an N-terminal b2-cytochrome domain, required for efficient cytochrome c reduction. FCB2 is a homotetramer and contains two noncovalently bound cofactors, FMN and heme per subunit.
Probab=59.59 E-value=18 Score=40.43 Aligned_cols=119 Identities=28% Similarity=0.308 Sum_probs=68.8
Q ss_pred HHHHHHHHHhhcCCCeEEeccccchhhhhhhhcCCcEEEEeccccccccCCccccccccccCchHHHHHhhhhhcCCC-C
Q 004491 480 AILSKLKYQIDKGLPIIGAGAGTGISAKFEEAGGVDLIVLYNSGRFRMAGRGSLAGLLPFADANAVVLEMANEVLPVV-K 558 (749)
Q Consensus 480 ~il~~L~~~i~~~~piig~gaGtGlsAk~ae~gGaDli~~ynsGrfR~~G~~SlagllpygdaN~iv~e~~~eilp~v-~ 558 (749)
+.++.|+++. +.|||--++++.-.|+.+.+.|+|.|++-|.| |+. +-+-.| . -.++...++.++.+ .
T Consensus 203 ~~i~~l~~~~--~~PvivKgv~~~~dA~~a~~~G~d~I~vsnhg-----G~~-~d~~~~---~-~~~L~~i~~~~~~~~~ 270 (344)
T cd02922 203 DDIKWLRKHT--KLPIVLKGVQTVEDAVLAAEYGVDGIVLSNHG-----GRQ-LDTAPA---P-IEVLLEIRKHCPEVFD 270 (344)
T ss_pred HHHHHHHHhc--CCcEEEEcCCCHHHHHHHHHcCCCEEEEECCC-----ccc-CCCCCC---H-HHHHHHHHHHHHHhCC
Confidence 4578888766 67999989999999999999999999999976 332 111111 0 00111122333333 3
Q ss_pred CCceEEe---eccCCCCCC----------HHHHHHHHHHcCccceecCCcccccchhhhhhhhhcCC
Q 004491 559 EVPVLAG---VCGTDPFRR----------VDYFLKQLESIGFFGVQNFPTVGLFDGNFRQNLEETGM 612 (749)
Q Consensus 559 ~tPViaG---v~atDP~~~----------~~~~l~~lk~~Gf~GV~NfPTvgliDG~fR~~LEe~G~ 612 (749)
++|||+- -++.|=+.- =..||..+...|-.||.|+... +.-++|..|...|.
T Consensus 271 ~~~vi~~GGIr~G~Dv~kalaLGA~aV~iG~~~l~~l~~~G~~gv~~~l~~--l~~EL~~~m~l~G~ 335 (344)
T cd02922 271 KIEVYVDGGVRRGTDVLKALCLGAKAVGLGRPFLYALSAYGEEGVEKAIQI--LKDEIETTMRLLGV 335 (344)
T ss_pred CceEEEeCCCCCHHHHHHHHHcCCCEEEECHHHHHHHhhccHHHHHHHHHH--HHHHHHHHHHHhCC
Confidence 5888764 223332221 1345555655666666666433 44445555555443
No 467
>cd00951 KDGDH 5-dehydro-4-deoxyglucarate dehydratase, also called 5-keto-4-deoxy-glucarate dehydratase (KDGDH), which is member of dihydrodipicolinate synthase (DHDPS) family that comprises several pyruvate-dependent class I aldolases. The enzyme is involved in glucarate metabolism, and its mechanism presumbly involves a Schiff-base intermediate similar to members of DHDPS family. While in the case of Pseudomonas sp. 5-dehydro-4-deoxy-D-glucarate is degraded by KDGDH to 2,5-dioxopentanoate, in certain species of Enterobacteriaceae it is degraded instead to pyruvate and glycerate.
Probab=59.57 E-value=23 Score=38.04 Aligned_cols=74 Identities=20% Similarity=0.257 Sum_probs=0.0
Q ss_pred ccccHHHHHHHHHHHhhcCCCeEEeccccchh-----hhhhhhcCCcEEEEeccccccccCCccccccccccCchHHHHH
Q 004491 474 TLQRTQAILSKLKYQIDKGLPIIGAGAGTGIS-----AKFEEAGGVDLIVLYNSGRFRMAGRGSLAGLLPFADANAVVLE 548 (749)
Q Consensus 474 ~~~~r~~il~~L~~~i~~~~piig~gaGtGls-----Ak~ae~gGaDli~~ynsGrfR~~G~~SlagllpygdaN~iv~e 548 (749)
|.-.|+++++...+.++.+.||| +|+|.... ||.+++.|+|-+++...-.|+. +-+-+.+
T Consensus 51 s~eEr~~l~~~~~~~~~~~~pvi-~gv~~~t~~~i~~a~~a~~~Gad~v~~~pP~y~~~--------------~~~~i~~ 115 (289)
T cd00951 51 TPDEYAQVVRAAVEETAGRVPVL-AGAGYGTATAIAYAQAAEKAGADGILLLPPYLTEA--------------PQEGLYA 115 (289)
T ss_pred CHHHHHHHHHHHHHHhCCCCCEE-EecCCCHHHHHHHHHHHHHhCCCEEEECCCCCCCC--------------CHHHHHH
Q ss_pred hhhhhcCCCCCCceE
Q 004491 549 MANEVLPVVKEVPVL 563 (749)
Q Consensus 549 ~~~eilp~v~~tPVi 563 (749)
.-++|...+ ++||+
T Consensus 116 ~f~~v~~~~-~~pi~ 129 (289)
T cd00951 116 HVEAVCKST-DLGVI 129 (289)
T ss_pred HHHHHHhcC-CCCEE
No 468
>cd02930 DCR_FMN 2,4-dienoyl-CoA reductase (DCR) FMN-binding domain. DCR in E. coli is an iron-sulfur flavoenzyme which contains FMN, FAD, and a 4Fe-4S cluster. It is also a monomer, unlike that of its eukaryotic counterparts which form homotetramers and lack the flavin and iron-sulfur cofactors. Metabolism of unsaturated fatty acids requires auxiliary enzymes in addition to those used in b-oxidation. After a given number of cycles through the b-oxidation pathway, those unsaturated fatty acyl-CoAs with double bonds at even-numbered carbon positions contain 2-trans, 4-cis double bonds that can not be modified by enoyl-CoA hydratase. DCR utilizes NADPH to remove the C4-C5 double bond. DCR can catalyze the reduction of both natural fatty acids with cis double bonds, as well as substrates containing trans double bonds. The reaction is initiated by hybrid transfer from NADPH to FAD, which in turn transfers electrons, one at a time, to FMN via the 4Fe-4S cluster. The fully reduced FMN provi
Probab=59.55 E-value=61 Score=35.88 Aligned_cols=79 Identities=19% Similarity=0.205 Sum_probs=41.2
Q ss_pred cCHHHHHH----HHhccCcEEEeccCCCccccccccc-ccCHHHHHHHHHHHHHHHHHhCCCeEEEEccCCCCCHHHHHH
Q 004491 636 FNEGEAVK----MAKAGADIIVAHMGLTTSGSIGAKT-ALSLDESVDRVQAIADAAHRINPDAIVLCHGGPISSPSEAEF 710 (749)
Q Consensus 636 f~~eqa~~----Ma~AGaDiiv~h~GlT~gG~~Ga~~-~~sl~~~~~~~~~i~~aa~~~~pdii~l~hGGPi~~p~d~~~ 710 (749)
++.+++.+ +.++|+|.|.+-.||-.. ...... ...-..-...+++|.++ + ++ .++.+|-|.+|++++.
T Consensus 221 ~~~~e~~~i~~~Le~~G~d~i~vs~g~~e~-~~~~~~~~~~~~~~~~~~~~ik~~---v--~i-PVi~~G~i~~~~~a~~ 293 (353)
T cd02930 221 STWEEVVALAKALEAAGADILNTGIGWHEA-RVPTIATSVPRGAFAWATAKLKRA---V--DI-PVIASNRINTPEVAER 293 (353)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEeCCCcCCC-CCccccccCCchhhHHHHHHHHHh---C--CC-CEEEcCCCCCHHHHHH
Confidence 57777754 457899999875554211 110000 00000012222333222 1 23 3444677999999999
Q ss_pred HHhhCCCccEEe
Q 004491 711 ILKRTKGVHGFY 722 (749)
Q Consensus 711 ~l~~~~~~~Gf~ 722 (749)
+++. ..+|..-
T Consensus 294 ~i~~-g~~D~V~ 304 (353)
T cd02930 294 LLAD-GDADMVS 304 (353)
T ss_pred HHHC-CCCChhH
Confidence 9977 4456543
No 469
>COG3867 Arabinogalactan endo-1,4-beta-galactosidase [Carbohydrate transport and metabolism]
Probab=59.33 E-value=16 Score=40.54 Aligned_cols=77 Identities=21% Similarity=0.244 Sum_probs=59.5
Q ss_pred cccCHHHHHHHHhccCcEEEeccCC-Cccccc---ccccccCHHHHHHHHHHHHHHHHHhCCCeEEEEccCCCCCHHHHH
Q 004491 634 YAFNEGEAVKMAKAGADIIVAHMGL-TTSGSI---GAKTALSLDESVDRVQAIADAAHRINPDAIVLCHGGPISSPSEAE 709 (749)
Q Consensus 634 yvf~~eqa~~Ma~AGaDiiv~h~Gl-T~gG~~---Ga~~~~sl~~~~~~~~~i~~aa~~~~pdii~l~hGGPi~~p~d~~ 709 (749)
|-|+.+--..|.++|+|+=-+.+|= |++|++ |-. + ..+.-++++++=.+|.|+++|+|.|++|=--=.++.-.+
T Consensus 155 y~yTk~~l~~m~~eGi~pdmVQVGNEtn~gflwp~Ge~-~-~f~k~a~L~n~g~~avrev~p~ikv~lHla~g~~n~~y~ 232 (403)
T COG3867 155 YSYTKYVLTTMKKEGILPDMVQVGNETNGGFLWPDGEG-R-NFDKMAALLNAGIRAVREVSPTIKVALHLAEGENNSLYR 232 (403)
T ss_pred HHHHHHHHHHHHHcCCCccceEeccccCCceeccCCCC-c-ChHHHHHHHHHHhhhhhhcCCCceEEEEecCCCCCchhh
Confidence 6677788889999999999999985 667777 433 2 788999999999999999999999999932223444444
Q ss_pred HHH
Q 004491 710 FIL 712 (749)
Q Consensus 710 ~~l 712 (749)
.+.
T Consensus 233 ~~f 235 (403)
T COG3867 233 WIF 235 (403)
T ss_pred HHH
Confidence 444
No 470
>TIGR01362 KDO8P_synth 3-deoxy-8-phosphooctulonate synthase. In Gram-negative bacteria, this is the first step in the biosynthesis of 3-deoxy-D-manno-octulosonate, part of the oligosaccharide core of lipopolysaccharide.
Probab=59.07 E-value=84 Score=34.22 Aligned_cols=91 Identities=15% Similarity=0.214 Sum_probs=64.4
Q ss_pred CceEEeeccCCCCCCHHHHHHHHHHcCccceecCCcccccchhhhhhhh-----hcCCchHHHHHHHHHHH-HcCCcccc
Q 004491 560 VPVLAGVCGTDPFRRVDYFLKQLESIGFFGVQNFPTVGLFDGNFRQNLE-----ETGMGYGLEVEMIDKAH-KMGLLTTP 633 (749)
Q Consensus 560 tPViaGv~atDP~~~~~~~l~~lk~~Gf~GV~NfPTvgliDG~fR~~LE-----e~G~gy~~EVemi~~A~-~~gl~T~~ 633 (749)
.-||||=|+-+-.-.+-.--++||+.|=. +--=+++.|.|.++-. =.|+|-+.=++++++++ +.||.++-
T Consensus 3 ~~viAGPCsvEs~e~~~~~A~~lk~~~~~----~~~~~~fk~sf~KapRTsp~sFqG~G~eeGL~iL~~vk~~~glpvvT 78 (258)
T TIGR01362 3 FFLIAGPCVIESEDHALRVAEKLKELTSK----LGVPFIFKSSFDKANRSSIHSFRGPGLEEGLKILQKVKEEFGVPILT 78 (258)
T ss_pred ceEEecCCcccCHHHHHHHHHHHHHHHHh----cCCCeEEecccCCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCceEE
Confidence 45899999999887777777888885321 1000233444443221 24666666688888775 57999999
Q ss_pred cccCHHHHHHHHhccCcEEEec
Q 004491 634 YAFNEGEAVKMAKAGADIIVAH 655 (749)
Q Consensus 634 yvf~~eqa~~Ma~AGaDiiv~h 655 (749)
=|.+++|+...++. +|||=+-
T Consensus 79 eV~~~~~~~~vae~-vDilQIg 99 (258)
T TIGR01362 79 DVHESSQCEPVAEV-VDIIQIP 99 (258)
T ss_pred EeCCHHHHHHHHhh-CcEEEeC
Confidence 99999999999999 9998653
No 471
>cd08556 GDPD Glycerophosphodiester phosphodiesterase domain as found in prokaryota and eukaryota, and similar proteins. The typical glycerophosphodiester phosphodiesterase domain (GDPD) consists of a TIM barrel and a small insertion domain named the GDPD-insertion (GDPD-I) domain, which is specific for GDPD proteins. This family corresponds to both typical GDPD domain and GDPD-like domain which lacks the GDPD-I region. Members in this family mainly consist of a large family of prokaryotic and eukaryotic glycerophosphodiester phosphodiesterases (GP-GDEs, EC 3.1.4.46), and a number of uncharacterized homologs. Sphingomyelinases D (SMases D) (sphingomyelin phosphodiesterase D, EC 3.1.4.41) from spider venom, SMases D-like proteins, and phospholipase D (PLD) from several pathogenic bacteria are also included in this family. GDPD plays an essential role in glycerol metabolism and catalyzes the hydrolysis of glycerophosphodiesters to sn-glycerol-3-phosphate (G3P) and the corresponding alcoho
Probab=59.04 E-value=13 Score=36.03 Aligned_cols=37 Identities=27% Similarity=0.423 Sum_probs=33.2
Q ss_pred HHHHHHHHHcCCcccccccC-HHHHHHHHhccCcEEEe
Q 004491 618 VEMIDKAHKMGLLTTPYAFN-EGEAVKMAKAGADIIVA 654 (749)
Q Consensus 618 Vemi~~A~~~gl~T~~yvf~-~eqa~~Ma~AGaDiiv~ 654 (749)
-++++.+|+.|+....|..| +++.+.+.+.|+|.|+.
T Consensus 150 ~~~i~~~~~~g~~v~~wtvn~~~~~~~~~~~GVdgI~T 187 (189)
T cd08556 150 PELVRAAHAAGLKVYVWTVNDPEDARRLLALGVDGIIT 187 (189)
T ss_pred HHHHHHHHHcCCEEEEEcCCCHHHHHHHHHCCCCEEec
Confidence 37799999999999999998 68899999999999975
No 472
>PF02571 CbiJ: Precorrin-6x reductase CbiJ/CobK; InterPro: IPR003723 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. This entry represents CobK and CbiJ precorrin-6x reductase (1.3.1.54 from EC). In the aerobic pathway, CobK catalyses the reduction of the macrocycle of precorrin-6X to produce precorrin-6Y; while in the anaerobic pathway CbiJ catalyses the reduction of the macrocycle of cobalt-precorrin-6X into cobalt-precorrin-6Y [, ].; GO: 0016994 precorrin-6A reductase activity, 0009236 cobalamin biosynthetic process, 0055114 oxidation-reduction process
Probab=59.04 E-value=22 Score=37.89 Aligned_cols=50 Identities=20% Similarity=0.276 Sum_probs=35.4
Q ss_pred ecCCC-chHHHHHHHHcCCceEEEeCchhhhhhhhhCCccCCCCchhhhhhhcCCCeEE
Q 004491 242 HATGV-GGRAMEALVKEGFIQGVLDITTTEVADYVVGGVMACDSSRFDATIEKKIPLVL 299 (749)
Q Consensus 242 HATG~-GGrAME~Li~eG~~~gVlDlTttElaD~l~GGv~saGp~RL~AA~~~GIPqVV 299 (749)
|.-+. +-..|++++++.-|+.|+|.|- =.|.++.-- =.+|+-+.|||++-
T Consensus 48 ~~G~lg~~~~l~~~l~~~~i~~vIDATH-PfA~~is~n-------a~~a~~~~~ipylR 98 (249)
T PF02571_consen 48 RVGRLGDEEGLAEFLRENGIDAVIDATH-PFAAEISQN-------AIEACRELGIPYLR 98 (249)
T ss_pred EECCCCCHHHHHHHHHhCCCcEEEECCC-chHHHHHHH-------HHHHHhhcCcceEE
Confidence 33444 5557899999999999999885 344444322 25678899999974
No 473
>cd07947 DRE_TIM_Re_CS Clostridium kluyveri Re-citrate synthase and related proteins, catalytic TIM barrel domain. Re-citrate synthase (Re-CS) is a Clostridium kluyveri enzyme that converts acetyl-CoA and oxaloacetate to citrate. In most organisms, this reaction is catalyzed by Si-citrate synthase which is Si-face stereospecific with respect to C-2 of oxaloacetate, and phylogenetically unrelated to Re-citrate synthase. Re-citrate synthase is also found in a few other strictly anaerobic organisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with
Probab=59.01 E-value=86 Score=34.04 Aligned_cols=114 Identities=12% Similarity=0.083 Sum_probs=76.1
Q ss_pred CCCCHHHHHHHHHHcC-----ccceecCCcccccchhhhhhhhhcCCchHHHHHHHHHHHHcCC----cccccccCHHHH
Q 004491 571 PFRRVDYFLKQLESIG-----FFGVQNFPTVGLFDGNFRQNLEETGMGYGLEVEMIDKAHKMGL----LTTPYAFNEGEA 641 (749)
Q Consensus 571 P~~~~~~~l~~lk~~G-----f~GV~NfPTvgliDG~fR~~LEe~G~gy~~EVemi~~A~~~gl----~T~~yvf~~eqa 641 (749)
|...--++++.|.+.| |.=|. +|+.+- .|-|.++...++++ ++.--+-|.++.
T Consensus 19 ~~~~Kv~i~~~L~~~G~~~~~v~~IE-~~s~~~-----------------~d~~~v~~~~~~~~~~~~v~~~~r~~~~di 80 (279)
T cd07947 19 TVEQIVKIYDYLHELGGGSGVIRQTE-FFLYTE-----------------KDREAVEACLDRGYKFPEVTGWIRANKEDL 80 (279)
T ss_pred CHHHHHHHHHHHHHcCCCCCccceEE-ecCcCh-----------------HHHHHHHHHHHcCCCCCEEEEEecCCHHHH
Confidence 4445568999999999 76665 443211 55566666656654 111134488999
Q ss_pred HHHHhccCcEEEeccCCCcccccccccccCHHHHHHHHHHHHHHHHHhCCCeEEEEccCCCCC
Q 004491 642 VKMAKAGADIIVAHMGLTTSGSIGAKTALSLDESVDRVQAIADAAHRINPDAIVLCHGGPISS 704 (749)
Q Consensus 642 ~~Ma~AGaDiiv~h~GlT~gG~~Ga~~~~sl~~~~~~~~~i~~aa~~~~pdii~l~hGGPi~~ 704 (749)
++..++|+|.+.+-+..+ -...=.+...|.+++++++.++.+.|++....+-+-+ .+++.+
T Consensus 81 e~A~~~g~~~v~i~~s~S-~~~~~~~~~~t~~e~l~~~~~~v~~a~~~g~~v~~~~-ed~~r~ 141 (279)
T cd07947 81 KLVKEMGLKETGILMSVS-DYHIFKKLKMTREEAMEKYLEIVEEALDHGIKPRCHL-EDITRA 141 (279)
T ss_pred HHHHHcCcCEEEEEEcCC-HHHHHHHhCcCHHHHHHHHHHHHHHHHHCCCeEEEEE-EcccCC
Confidence 999999999877654322 2223345568999999999999999999876655544 455544
No 474
>PRK07178 pyruvate carboxylase subunit A; Validated
Probab=58.94 E-value=2.3e+02 Score=32.76 Aligned_cols=154 Identities=19% Similarity=0.283 Sum_probs=96.3
Q ss_pred hhhhhhhcCCcEEEEeccccccccCCccccccccccCchHHHHHhhhhhcCCCCCCceEEeeccCCCCCCHHHHHHHHHH
Q 004491 505 SAKFEEAGGVDLIVLYNSGRFRMAGRGSLAGLLPFADANAVVLEMANEVLPVVKEVPVLAGVCGTDPFRRVDYFLKQLES 584 (749)
Q Consensus 505 sAk~ae~gGaDli~~ynsGrfR~~G~~SlagllpygdaN~iv~e~~~eilp~v~~tPViaGv~atDP~~~~~~~l~~lk~ 584 (749)
.+|.+.+-|...+++|+. .|++..-..++.|...+ ...| .+.|.+.+..++-.++
T Consensus 17 ii~a~~~~Gi~~v~v~~~-----------------~d~~a~~~~~aD~~~~i-~~~~-------~~~y~d~~~i~~~a~~ 71 (472)
T PRK07178 17 IVRACAEMGIRSVAIYSE-----------------ADRHALHVKRADEAYSI-GADP-------LAGYLNPRRLVNLAVE 71 (472)
T ss_pred HHHHHHHcCCeEEEEeCC-----------------CccCCccHhhCCEEEEc-CCCc-------hhhhcCHHHHHHHHHH
Confidence 356677778888877754 23444445556552211 1111 2567888888888888
Q ss_pred cCccceecCCccccc--chhhhhhhhhcCC---chHHHH--------HHHHHHHHcCCcccccc----cCHHHHHHHH-h
Q 004491 585 IGFFGVQNFPTVGLF--DGNFRQNLEETGM---GYGLEV--------EMIDKAHKMGLLTTPYA----FNEGEAVKMA-K 646 (749)
Q Consensus 585 ~Gf~GV~NfPTvgli--DG~fR~~LEe~G~---gy~~EV--------emi~~A~~~gl~T~~yv----f~~eqa~~Ma-~ 646 (749)
.|..+|. |..|.. +..|.+.+|+.|+ |-+.|. .+-+.+.+.|+-|.|+. -+.+++.+.+ +
T Consensus 72 ~~~D~I~--pg~g~lse~~~~a~~~e~~Gi~~igps~~~i~~~~DK~~~r~~l~~~GIp~pp~~~~~~~~~~e~~~~~~~ 149 (472)
T PRK07178 72 TGCDALH--PGYGFLSENAELAEICAERGIKFIGPSAEVIRRMGDKTEARRAMIKAGVPVTPGSEGNLADLDEALAEAER 149 (472)
T ss_pred HCCCEEE--eCCCCcccCHHHHHHHHHcCCCccCCCHHHHHHhcCHHHHHHHHHHCCCCCCCCcCcCCCCHHHHHHHHHH
Confidence 8888774 444433 2456778888886 544443 45567889999999975 3677877654 4
Q ss_pred ccCcEEEeccCCCcccccccccccCHHHHHHHHHHHHHHHH
Q 004491 647 AGADIIVAHMGLTTSGSIGAKTALSLDESVDRVQAIADAAH 687 (749)
Q Consensus 647 AGaDiiv~h~GlT~gG~~Ga~~~~sl~~~~~~~~~i~~aa~ 687 (749)
-|--+++=-. .-||..|.....+-+|..+..+...+.+.
T Consensus 150 igyPvvvKp~--~ggGg~Gv~~v~~~~eL~~a~~~~~~~~~ 188 (472)
T PRK07178 150 IGYPVMLKAT--SGGGGRGIRRCNSREELEQNFPRVISEAT 188 (472)
T ss_pred cCCcEEEEeC--CCCCCCCceEeCCHHHHHHHHHHHHHHHH
Confidence 4655554332 23577888777777777766665554444
No 475
>cd04737 LOX_like_FMN L-Lactate oxidase (LOX) FMN-binding domain. LOX is a member of the family of FMN-containing alpha-hydroxyacid oxidases and catalyzes the oxidation of l-lactate using molecular oxygen to generate pyruvate and H2O2. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO).
Probab=58.92 E-value=21 Score=39.99 Aligned_cols=92 Identities=26% Similarity=0.315 Sum_probs=60.3
Q ss_pred HHHHHHHHHhhcCCCeEEeccccchhhhhhhhcCCcEEEEeccccccccCCccccccccccCchHHHHHhhhhhcCCCC-
Q 004491 480 AILSKLKYQIDKGLPIIGAGAGTGISAKFEEAGGVDLIVLYNSGRFRMAGRGSLAGLLPFADANAVVLEMANEVLPVVK- 558 (749)
Q Consensus 480 ~il~~L~~~i~~~~piig~gaGtGlsAk~ae~gGaDli~~ynsGrfR~~G~~SlagllpygdaN~iv~e~~~eilp~v~- 558 (749)
+.++.||+.. +.||+-=|..+.--|+.+.+.|+|.|++=|.|. |..- .+ ...++.-.||...++
T Consensus 211 ~~l~~lr~~~--~~PvivKgv~~~~dA~~a~~~G~d~I~vsnhGG-r~ld----~~--------~~~~~~l~~i~~a~~~ 275 (351)
T cd04737 211 ADIEFIAKIS--GLPVIVKGIQSPEDADVAINAGADGIWVSNHGG-RQLD----GG--------PASFDSLPEIAEAVNH 275 (351)
T ss_pred HHHHHHHHHh--CCcEEEecCCCHHHHHHHHHcCCCEEEEeCCCC-ccCC----CC--------chHHHHHHHHHHHhCC
Confidence 5678888876 579888888899999999999999999999885 2211 11 112233334444443
Q ss_pred CCceEEeeccCCCCCCHHHHHHHHHHcCcccee
Q 004491 559 EVPVLAGVCGTDPFRRVDYFLKQLESIGFFGVQ 591 (749)
Q Consensus 559 ~tPViaGv~atDP~~~~~~~l~~lk~~Gf~GV~ 591 (749)
++|||+-= =.++-...++-|. +|-.+|+
T Consensus 276 ~i~vi~dG----GIr~g~Di~kaLa-lGA~~V~ 303 (351)
T cd04737 276 RVPIIFDS----GVRRGEHVFKALA-SGADAVA 303 (351)
T ss_pred CCeEEEEC----CCCCHHHHHHHHH-cCCCEEE
Confidence 58877531 1345556666666 7777664
No 476
>PRK12999 pyruvate carboxylase; Reviewed
Probab=58.88 E-value=2.2e+02 Score=36.99 Aligned_cols=153 Identities=19% Similarity=0.254 Sum_probs=99.4
Q ss_pred hhhhhhcCCcEEEEeccccccccCCccccccccccCchHHHHHhhhhh--cCCCCCCceEEeeccCCCCCCHHHHHHHHH
Q 004491 506 AKFEEAGGVDLIVLYNSGRFRMAGRGSLAGLLPFADANAVVLEMANEV--LPVVKEVPVLAGVCGTDPFRRVDYFLKQLE 583 (749)
Q Consensus 506 Ak~ae~gGaDli~~ynsGrfR~~G~~SlagllpygdaN~iv~e~~~ei--lp~v~~tPViaGv~atDP~~~~~~~l~~lk 583 (749)
++.+.+-|...+++|.. .|.|..-..++.|. +|.- -...+.|.+.+..++-.+
T Consensus 21 ~raa~elGi~~Vav~s~-----------------~D~~a~~~~~ADe~~~i~~~--------~~~~~~Yldid~Ii~iAk 75 (1146)
T PRK12999 21 FRAATELGIRTVAIYSE-----------------EDKLSLHRFKADEAYLIGEG--------KHPVRAYLDIDEIIRVAK 75 (1146)
T ss_pred HHHHHHcCCEEEEEECC-----------------CCcCCchHHhCCEEEEcCCC--------CCcccCccCHHHHHHHHH
Confidence 45555668887777653 23333444456542 3321 123467889999999999
Q ss_pred HcCccceecCCcccccc--hhhhhhhhhcCC---chHHH--------HHHHHHHHHcCCccccc----ccCHHHHHHHH-
Q 004491 584 SIGFFGVQNFPTVGLFD--GNFRQNLEETGM---GYGLE--------VEMIDKAHKMGLLTTPY----AFNEGEAVKMA- 645 (749)
Q Consensus 584 ~~Gf~GV~NfPTvgliD--G~fR~~LEe~G~---gy~~E--------Vemi~~A~~~gl~T~~y----vf~~eqa~~Ma- 645 (749)
+.++.+| +|..|+.. -.|.+.+|+.|+ |-+.| ..+-+.+++.|+-+.|+ +.+.+|+.+.+
T Consensus 76 ~~~iDaI--~PgyGflsE~~~~a~~~e~~Gi~fiGps~eai~~~~DK~~~r~~l~~~GVPv~P~~~~~v~s~eea~~~a~ 153 (1146)
T PRK12999 76 QAGVDAI--HPGYGFLSENPEFARACAEAGITFIGPTAEVLRLLGDKVAARNAAIKAGVPVIPGSEGPIDDIEEALEFAE 153 (1146)
T ss_pred HhCCCEE--EeCCCccccCHHHHHHHHHcCCcccCCCHHHHHHhCCHHHHHHHHHHCCCCCCCCcccCCCCHHHHHHHHH
Confidence 9998888 45555443 467888999998 43333 34667789999999985 45778887765
Q ss_pred hccCcEEEeccCCCcccccccccccCHHHHHHHHHHHHHHHH
Q 004491 646 KAGADIIVAHMGLTTSGSIGAKTALSLDESVDRVQAIADAAH 687 (749)
Q Consensus 646 ~AGaDiiv~h~GlT~gG~~Ga~~~~sl~~~~~~~~~i~~aa~ 687 (749)
+-|--+|+=-.. -||..|.....+.+|..+..++..+.+.
T Consensus 154 ~iGyPvVVKP~~--GgGGrGv~vV~~~eEL~~a~~~a~~ea~ 193 (1146)
T PRK12999 154 EIGYPIMLKASA--GGGGRGMRIVRSEEELEEAFERAKREAK 193 (1146)
T ss_pred HhCCCEEEEECC--CCCCCCeEEeCCHHHHHHHHHHHHHHHH
Confidence 556666653322 2577887777777777666665554443
No 477
>PRK07896 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=58.88 E-value=52 Score=36.16 Aligned_cols=143 Identities=12% Similarity=0.062 Sum_probs=84.4
Q ss_pred hhcCCCCCCc-eEEeeccCCCCCCHHHHHHHHHHcC--ccceec-CCcccccchhhhhhhhhcCCchHHHHHHHHHHHHc
Q 004491 552 EVLPVVKEVP-VLAGVCGTDPFRRVDYFLKQLESIG--FFGVQN-FPTVGLFDGNFRQNLEETGMGYGLEVEMIDKAHKM 627 (749)
Q Consensus 552 eilp~v~~tP-ViaGv~atDP~~~~~~~l~~lk~~G--f~GV~N-fPTvgliDG~fR~~LEe~G~gy~~EVemi~~A~~~ 627 (749)
+..-.+.+.+ .+++--=|=|... .|.++--..| +.--.+ +.+|-+.|-+++ -.| ++. +.++++++.
T Consensus 127 ~~v~~~~~~~~~i~~TRKT~Pg~R--~l~k~AV~~GGG~~HR~gLsd~ilIkdNHi~----~~G-~i~---~ai~~~r~~ 196 (289)
T PRK07896 127 AWVDAVAGTKAKIRDTRKTLPGLR--ALQKYAVRCGGGVNHRMGLGDAALIKDNHVA----AAG-SVV---AALRAVRAA 196 (289)
T ss_pred HHHHHhcCCCeEEEecCCCCCcch--HHHHHHHHhCCCccccCCCcceeeecHHHHH----HhC-cHH---HHHHHHHHh
Confidence 3333334444 4555555556533 2333333332 322334 566777776643 234 444 455555554
Q ss_pred C--CcccccccCHHHHHHHHhccCcEEEeccCCCcccccccccccCHHHHHHHHHHHHHHHHHhCCCeEEEEccCCCCCH
Q 004491 628 G--LLTTPYAFNEGEAVKMAKAGADIIVAHMGLTTSGSIGAKTALSLDESVDRVQAIADAAHRINPDAIVLCHGGPISSP 705 (749)
Q Consensus 628 g--l~T~~yvf~~eqa~~Ma~AGaDiiv~h~GlT~gG~~Ga~~~~sl~~~~~~~~~i~~aa~~~~pdii~l~hGGPi~~p 705 (749)
- .--.-=|=|.+||.+.+++|||+|-.- -.|.++..+ +.+..++.+|++.+.+.|| -++
T Consensus 197 ~~~~kIeVEv~tl~ea~eal~~gaDiI~LD-------------nm~~e~vk~----av~~~~~~~~~v~ieaSGG--I~~ 257 (289)
T PRK07896 197 APDLPCEVEVDSLEQLDEVLAEGAELVLLD-------------NFPVWQTQE----AVQRRDARAPTVLLESSGG--LTL 257 (289)
T ss_pred CCCCCEEEEcCCHHHHHHHHHcCCCEEEeC-------------CCCHHHHHH----HHHHHhccCCCEEEEEECC--CCH
Confidence 1 112233568899999999999999886 345444433 3334455689999999999 688
Q ss_pred HHHHHHHhhCCCccEEecCc
Q 004491 706 SEAEFILKRTKGVHGFYGAS 725 (749)
Q Consensus 706 ~d~~~~l~~~~~~~Gf~g~S 725 (749)
+.+..+- . +++|.+.-++
T Consensus 258 ~ni~~yA-~-tGvD~Is~ga 275 (289)
T PRK07896 258 DTAAAYA-E-TGVDYLAVGA 275 (289)
T ss_pred HHHHHHH-h-cCCCEEEeCh
Confidence 8888875 4 5787776554
No 478
>PRK02506 dihydroorotate dehydrogenase 1A; Reviewed
Probab=58.83 E-value=60 Score=35.50 Aligned_cols=173 Identities=18% Similarity=0.156 Sum_probs=86.5
Q ss_pred eEEecCHHHHHHHHHHHHHHHccCCCCeEEEeeCCCCcccCCCC--CCCCChhhhHHHHHHHHHhcccCCCceEEecCCC
Q 004491 332 SLMRTTVDENKKFAAFIANKLNQSSSKIRLCLPQNGISALDAPG--KPFYDPEATGTLISELRTLIQTNEDRQVKVYPHN 409 (749)
Q Consensus 332 TlmRTt~eE~~~ig~~iA~kLn~a~gpv~vllP~~G~S~lD~~G--~pf~DPeAd~al~~~L~~~l~~~~~~~v~~~d~h 409 (749)
.++-.|++|+.++++.+.+ +..--.+=| -+|.-..+| ...+||+.-..+++++++..+ +.-..+++-+
T Consensus 98 Si~G~~~~~~~~~a~~~~~----~g~ad~iEl---N~ScPn~~~~~~~g~d~~~~~~i~~~v~~~~~---~Pv~vKlsp~ 167 (310)
T PRK02506 98 SVVGLSPEETHTILKKIQA----SDFNGLVEL---NLSCPNVPGKPQIAYDFETTEQILEEVFTYFT---KPLGVKLPPY 167 (310)
T ss_pred EEEeCcHHHHHHHHHHHhh----cCCCCEEEE---ECCCCCCCCccccccCHHHHHHHHHHHHHhcC---CccEEecCCC
Confidence 3466788999888776542 210111111 022111112 224489998889999988764 1225578888
Q ss_pred CCCHHHHHHHHHHHHHHHhccccccCCccccc--cccccccccccccCCCcccccCCCCCCCCCCcccccHHHHHHHHHH
Q 004491 410 INDSEFADALVDSFLEISGKNLMAFSSAHHVS--CERHEDSVSNIYSSSHGTICYSPSNFPDARPETLQRTQAILSKLKY 487 (749)
Q Consensus 410 INDp~FA~a~a~~l~~l~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~il~~L~~ 487 (749)
++.+++++++...... .............+ .+........+.....|-+ .-|--||-.| ..+.++++
T Consensus 168 ~~~~~~a~~~~~~~~~--g~~~i~~~nt~~~~~~iD~~~~~~~~~~~~~~GGl-----SG~~i~p~al----~~v~~~~~ 236 (310)
T PRK02506 168 FDIVHFDQAAAIFNKF--PLAFVNCINSIGNGLVIDPEDETVVIKPKNGFGGI-----GGDYIKPTAL----ANVRAFYQ 236 (310)
T ss_pred CCHHHHHHHHHHhCcC--ceEEEEEeccCCCceEEecCCCCccccCCCCCCcC-----CchhccHHHH----HHHHHHHH
Confidence 8878888766322111 00000000000000 0110000000000001111 1122233222 34556666
Q ss_pred HhhcCCCeEE-eccccchhhhhhhhcCCcEEEEeccccc
Q 004491 488 QIDKGLPIIG-AGAGTGISAKFEEAGGVDLIVLYNSGRF 525 (749)
Q Consensus 488 ~i~~~~piig-~gaGtGlsAk~ae~gGaDli~~ynsGrf 525 (749)
++..+.|||| .|.-+|--|----..|||.+-+|.+=.|
T Consensus 237 ~~~~~ipIig~GGI~s~~da~e~i~aGA~~Vqv~ta~~~ 275 (310)
T PRK02506 237 RLNPSIQIIGTGGVKTGRDAFEHILCGASMVQVGTALHK 275 (310)
T ss_pred hcCCCCCEEEECCCCCHHHHHHHHHcCCCHHhhhHHHHH
Confidence 6666789999 5677777777677999999988765444
No 479
>TIGR02690 resist_ArsH arsenical resistance protein ArsH. Members of this protein family occur in arsenate resistance operons that include at least two different types of arsenate reductase. ArsH is not required for arsenate resistance in some systems. This family belongs to the larger family of NADPH-dependent FMN reductases (Pfam model pfam03358). The function of ArsH is not known.
Probab=58.78 E-value=29 Score=36.50 Aligned_cols=111 Identities=5% Similarity=-0.095 Sum_probs=61.2
Q ss_pred CCCCEEEEEEcCccc---HHHHHHHHHHHHccccccCCCCCCCCcEEEEeccCCCCCCCCCCCccccC-----hHHHHhh
Q 004491 3 DKIPRVFCIGTADTK---LEELQFLSGSVRSNLATFSNNSSSKVDVVVVDVSVSGKETENVGDFKFVK-----RKAVLSC 74 (749)
Q Consensus 3 ~~~~tV~lIGT~DTK---~~E~~ylr~~I~~~~~~~~~~~~~G~~v~~iDvg~~~~~~~~~~D~~~Is-----~~~Va~~ 74 (749)
+.++-++|+|++-.. ...+.|+.+.+.+ .|+++.++|+.-.+.++ .|....+ ++.|.++
T Consensus 25 ~~~kI~~I~GSlR~~S~n~~la~~~~~~~~~----------~g~~v~~idl~~lPl~~---~d~~~~p~v~~l~~~v~~A 91 (219)
T TIGR02690 25 HIPRILLLYGSLRERSYSRLLAEEAARLLGC----------EGRETRIFDPPGLPLPD---AAHADHPKVRELRQLSEWS 91 (219)
T ss_pred CCCEEEEEECCCCCcchHHHHHHHHHHHHhh----------cCCEEEEeCcccCCCCC---cCcccCHHHHHHHHHHHhC
Confidence 344457778887543 4567788888775 48999999986544332 2211111 1122211
Q ss_pred CCCCCCCCCCcccCcHHHHHHHHHHHHHHHHHHhHh--------cCcccEEEEecCcchhHHHHHHhhh
Q 004491 75 LPESNGKIPDELDDDRGKAISFMSKALENFLQIAIE--------DQVLAGVIGLGGSGGTSLISSAFKS 135 (749)
Q Consensus 75 ~~~~~~~~~~~~~~dRg~Ai~~M~~~~~~~l~~l~~--------~g~i~GVIglGGs~GT~lat~aMr~ 135 (749)
.+ ..+. .-++...+...+.++|.=+.. .+|..||+|..|+.++.-+...||.
T Consensus 92 Dg-------vii~--TPEYn~sipg~LKNaiDwls~~~~~~~~~~~KpvaivgaSgg~~g~ra~~~LR~ 151 (219)
T TIGR02690 92 EG-------QVWC--SPERHGAITGSQKDQIDWIPLSVGPVRPTQGKTLAVMQVSGGSQSFNAVNILRR 151 (219)
T ss_pred CE-------EEEe--CCccccCcCHHHHHHHHhcccCcccccccCCCcEEEEEeCCcHhHHHHHHHHHH
Confidence 11 1110 113333344444444444433 4899999998777777777777774
No 480
>PRK09389 (R)-citramalate synthase; Provisional
Probab=58.72 E-value=1e+02 Score=36.03 Aligned_cols=136 Identities=13% Similarity=0.039 Sum_probs=84.3
Q ss_pred HHHHHHHHHHcCccceec-CCcccccchhhhhhhhhcCCchHHHHHHHHHHHHcCCccc--cccc-CHHHHHHHHhccCc
Q 004491 575 VDYFLKQLESIGFFGVQN-FPTVGLFDGNFRQNLEETGMGYGLEVEMIDKAHKMGLLTT--PYAF-NEGEAVKMAKAGAD 650 (749)
Q Consensus 575 ~~~~l~~lk~~Gf~GV~N-fPTvgliDG~fR~~LEe~G~gy~~EVemi~~A~~~gl~T~--~yvf-~~eqa~~Ma~AGaD 650 (749)
.-++.+.|-++||.-|-= ||..+ ..|.|.++...++++-+. +++- ..++.++..++|+|
T Consensus 26 K~~ia~~L~~~Gv~~IE~G~p~~~-----------------~~d~e~v~~i~~~~~~~~i~a~~r~~~~di~~a~~~g~~ 88 (488)
T PRK09389 26 KLEIARKLDELGVDVIEAGSAITS-----------------EGEREAIKAVTDEGLNAEICSFARAVKVDIDAALECDVD 88 (488)
T ss_pred HHHHHHHHHHcCCCEEEEeCCcCC-----------------HHHHHHHHHHHhcCCCcEEEeecccCHHHHHHHHhCCcC
Confidence 456788999999887653 67533 456677777777665333 2222 26778888899999
Q ss_pred EEEeccCCCcccc-cccccccCHHHHHHHHHHHHHHHHHhCCCeEEEEccCCCCCHHHHHHHHhhC--CCccEEecCccc
Q 004491 651 IIVAHMGLTTSGS-IGAKTALSLDESVDRVQAIADAAHRINPDAIVLCHGGPISSPSEAEFILKRT--KGVHGFYGASSM 727 (749)
Q Consensus 651 iiv~h~GlT~gG~-~Ga~~~~sl~~~~~~~~~i~~aa~~~~pdii~l~hGGPi~~p~d~~~~l~~~--~~~~Gf~g~Ss~ 727 (749)
+|.... .+.-. +-.+-..|.++.++.+.+..+.|++...++.+-+--++-++|+.+..+++.. .+++-+.=..+.
T Consensus 89 ~v~i~~--~~Sd~h~~~~l~~s~~e~l~~~~~~v~~ak~~g~~v~~~~ed~~r~~~~~l~~~~~~~~~~Ga~~i~l~DTv 166 (488)
T PRK09389 89 SVHLVV--PTSDLHIEYKLKKTREEVLETAVEAVEYAKDHGLIVELSGEDASRADLDFLKELYKAGIEAGADRICFCDTV 166 (488)
T ss_pred EEEEEE--ccCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCEEEEEEeeCCCCCHHHHHHHHHHHHhCCCCEEEEecCC
Confidence 754444 33222 1223346788888888888888887776655554455666677666665332 234444444444
Q ss_pred cc
Q 004491 728 ER 729 (749)
Q Consensus 728 ER 729 (749)
..
T Consensus 167 G~ 168 (488)
T PRK09389 167 GI 168 (488)
T ss_pred CC
Confidence 44
No 481
>TIGR03471 HpnJ hopanoid biosynthesis associated radical SAM protein HpnJ. One of the well-described hopanoid intermediates is bacteriohopanetetrol. In the conversion from hopene several reactions must occur in the side chain for which a radical mechanism might be reasonable. These include the four (presumably anaerobic) hydroxylations and a methyl shift.
Probab=58.71 E-value=37 Score=38.91 Aligned_cols=128 Identities=12% Similarity=0.102 Sum_probs=70.2
Q ss_pred CCCHHHHHHHHHHcC--ccceecCCcccccchhhhhhhhhcCCchHHHHHHHHHHHHcCCcccc---cccCHHHHHHHHh
Q 004491 572 FRRVDYFLKQLESIG--FFGVQNFPTVGLFDGNFRQNLEETGMGYGLEVEMIDKAHKMGLLTTP---YAFNEGEAVKMAK 646 (749)
Q Consensus 572 ~~~~~~~l~~lk~~G--f~GV~NfPTvgliDG~fR~~LEe~G~gy~~EVemi~~A~~~gl~T~~---yvf~~eqa~~Ma~ 646 (749)
+++.++.+++|+.+- |.|+ .++-+.|+.|-.+. .+=.++++.-++.|+--.. --+++|..+.|.+
T Consensus 226 ~rs~e~V~~Ei~~~~~~~~~~---~~i~f~Dd~f~~~~-------~~~~~l~~~l~~~~i~~~~~~~~~~~~e~l~~l~~ 295 (472)
T TIGR03471 226 TRSAESVIEEVKYALENFPEV---REFFFDDDTFTDDK-------PRAEEIARKLGPLGVTWSCNARANVDYETLKVMKE 295 (472)
T ss_pred eCCHHHHHHHHHHHHHhcCCC---cEEEEeCCCCCCCH-------HHHHHHHHHHhhcCceEEEEecCCCCHHHHHHHHH
Confidence 356777777776542 2222 33445666553211 1113344444455542111 1257899999999
Q ss_pred ccCcEEEeccCCCccccc---ccccccCHHHHHHHHHHHHHHHHHhCCCeEEEEccCCCCCHHHHHHHHhh
Q 004491 647 AGADIIVAHMGLTTSGSI---GAKTALSLDESVDRVQAIADAAHRINPDAIVLCHGGPISSPSEAEFILKR 714 (749)
Q Consensus 647 AGaDiiv~h~GlT~gG~~---Ga~~~~sl~~~~~~~~~i~~aa~~~~pdii~l~hGGPi~~p~d~~~~l~~ 714 (749)
||..- +++|+-++-.- ..++..++++..+.++.+.++--.++- -++.|-|=.|++|++..++.
T Consensus 296 aG~~~--v~iGiES~s~~~L~~~~K~~~~~~~~~~i~~~~~~Gi~v~~---~~IiGlPget~e~~~~ti~~ 361 (472)
T TIGR03471 296 NGLRL--LLVGYESGDQQILKNIKKGLTVEIARRFTRDCHKLGIKVHG---TFILGLPGETRETIRKTIDF 361 (472)
T ss_pred cCCCE--EEEcCCCCCHHHHHHhcCCCCHHHHHHHHHHHHHCCCeEEE---EEEEeCCCCCHHHHHHHHHH
Confidence 99875 45777654321 224556777766666555443222221 23458899999988776543
No 482
>PRK08462 biotin carboxylase; Validated
Probab=58.47 E-value=16 Score=41.24 Aligned_cols=93 Identities=23% Similarity=0.232 Sum_probs=58.2
Q ss_pred HHHHHHHHHHcCCcccccccCHHHHHHHHhccCcEEEeccCCCcccccccccccCHHHHHHHHHHHHHHHHHhCCCeEEE
Q 004491 617 EVEMIDKAHKMGLLTTPYAFNEGEAVKMAKAGADIIVAHMGLTTSGSIGAKTALSLDESVDRVQAIADAAHRINPDAIVL 696 (749)
Q Consensus 617 EVemi~~A~~~gl~T~~yvf~~eqa~~Ma~AGaDiiv~h~GlT~gG~~Ga~~~~sl~~~~~~~~~i~~aa~~~~pdii~l 696 (749)
.|..|+.|+++|+-|++- ++..+.-.+.-.=||--+.- |.. ..+++-..+++|.+.|++.+.|.|+-
T Consensus 16 ~~~~~~~~~~~G~~~v~~-~~~~d~~~~~~~~ad~~~~~---------~~~---~~~~~y~~~~~l~~~~~~~~~D~i~p 82 (445)
T PRK08462 16 ALRAIRTIQEMGKEAIAI-YSTADKDALYLKYADAKICI---------GGA---KSSESYLNIPAIISAAEIFEADAIFP 82 (445)
T ss_pred HHHHHHHHHHcCCCEEEE-echhhcCCchhhhCCEEEEe---------CCC---chhcccCCHHHHHHHHHHcCCCEEEE
Confidence 689999999999999874 44444432322224433311 111 01223334678999999999999999
Q ss_pred EccCCCCCHHHHHHHHhhCCCccEEecCc
Q 004491 697 CHGGPISSPSEAEFILKRTKGVHGFYGAS 725 (749)
Q Consensus 697 ~hGGPi~~p~d~~~~l~~~~~~~Gf~g~S 725 (749)
++| ..++..++.++++. -++ =|+|.|
T Consensus 83 g~g-~lse~~~~a~~~e~-~Gi-~~~g~~ 108 (445)
T PRK08462 83 GYG-FLSENQNFVEICSH-HNI-KFIGPS 108 (445)
T ss_pred CCC-ccccCHHHHHHHHH-CCC-eEECcC
Confidence 885 66666777777765 222 256643
No 483
>PRK05437 isopentenyl pyrophosphate isomerase; Provisional
Probab=58.39 E-value=1.4e+02 Score=33.37 Aligned_cols=150 Identities=16% Similarity=0.129 Sum_probs=86.5
Q ss_pred CCCeEE-ecc------ccchhhhhhhhcCCcEEEEe-ccccccccCCccccccccccCchH-HHHHhhhhhcCCCCCCce
Q 004491 492 GLPIIG-AGA------GTGISAKFEEAGGVDLIVLY-NSGRFRMAGRGSLAGLLPFADANA-VVLEMANEVLPVVKEVPV 562 (749)
Q Consensus 492 ~~piig-~ga------GtGlsAk~ae~gGaDli~~y-nsGrfR~~G~~SlagllpygdaN~-iv~e~~~eilp~v~~tPV 562 (749)
.+|+++ .++ +.-...+..+..+||.+-+. |.+. -..+|=++.+- -++|.-++|...+ +.||
T Consensus 120 ~~p~~aNl~~~~~~~~~~~~~~~~~~~~~adal~l~l~~~q---------e~~~p~g~~~f~~~le~i~~i~~~~-~vPV 189 (352)
T PRK05437 120 DGLLFANLGAVQLYGYGVEEAQRAVEMIEADALQIHLNPLQ---------ELVQPEGDRDFRGWLDNIAEIVSAL-PVPV 189 (352)
T ss_pred CceEEeecCccccCCCCHHHHHHHHHhcCCCcEEEeCccch---------hhcCCCCcccHHHHHHHHHHHHHhh-CCCE
Confidence 667766 222 12346677888899988763 3211 11222233331 2334445555555 5899
Q ss_pred EEeeccCCCCCCHHHHHHHHHHcCcccee--cCCcccccchh-hhh-------hhhhcCCchHHHHHHHHHHH-HcCCcc
Q 004491 563 LAGVCGTDPFRRVDYFLKQLESIGFFGVQ--NFPTVGLFDGN-FRQ-------NLEETGMGYGLEVEMIDKAH-KMGLLT 631 (749)
Q Consensus 563 iaGv~atDP~~~~~~~l~~lk~~Gf~GV~--NfPTvgliDG~-fR~-------~LEe~G~gy~~EVemi~~A~-~~gl~T 631 (749)
+.=.+++ -...+..+.|.+.|..+|. |..--..++-. .|. .+.+.|+.....+-.++.+. +.-+..
T Consensus 190 ivK~~g~---g~s~~~a~~l~~~Gvd~I~Vsg~GGt~~~~ie~~R~~~~~~~~~~~~~g~pt~~~l~~i~~~~~~ipvia 266 (352)
T PRK05437 190 IVKEVGF---GISKETAKRLADAGVKAIDVAGAGGTSWAAIENYRARDDRLASYFADWGIPTAQSLLEARSLLPDLPIIA 266 (352)
T ss_pred EEEeCCC---CCcHHHHHHHHHcCCCEEEECCCCCCCccchhhhhhhccccccccccccCCHHHHHHHHHHhcCCCeEEE
Confidence 8743332 2336888999999999954 43211112212 232 23344555445555555552 456777
Q ss_pred cccccCHHHHHHHHhccCcEEEe
Q 004491 632 TPYAFNEGEAVKMAKAGADIIVA 654 (749)
Q Consensus 632 ~~yvf~~eqa~~Ma~AGaDiiv~ 654 (749)
..=+.|..++.++..+|||.+-+
T Consensus 267 ~GGI~~~~dv~k~l~~GAd~v~i 289 (352)
T PRK05437 267 SGGIRNGLDIAKALALGADAVGM 289 (352)
T ss_pred ECCCCCHHHHHHHHHcCCCEEEE
Confidence 77889999999999999997654
No 484
>cd08573 GDPD_GDE1 Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester phosphodiesterase GDE1 and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in mammalian GDE1 (also known as MIR16, membrane interacting protein of RGS16) and their metazoan homologs. GDE1 is widely expressed in mammalian tissues, including the heart, brain, liver, and kidney. It shows sequence homology to bacterial glycerophosphodiester phosphodiesterases (GP-GDEs, EC 3.1.4.46), which catalyzes the hydrolysis of various glycerophosphodiesters, and produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. GDE1 has been characterized as GPI-GDE (EC 3.1.4.44) that selectively hydrolyzes extracellular glycerophosphoinositol (GPI) to generate glycerol phosphate and inositol. It functions as an integral membrane-bound glycoprotein interacting with regulator of G protein signaling protein RGS16, and is modulated by G
Probab=58.28 E-value=11 Score=39.89 Aligned_cols=34 Identities=15% Similarity=0.170 Sum_probs=31.3
Q ss_pred HHHHHHHHcCCcccccccC-HHHHHHHHh-ccCcEEE
Q 004491 619 EMIDKAHKMGLLTTPYAFN-EGEAVKMAK-AGADIIV 653 (749)
Q Consensus 619 emi~~A~~~gl~T~~yvf~-~eqa~~Ma~-AGaDiiv 653 (749)
++++.||+.|+...+|-.| +++++++.+ .|+| |+
T Consensus 219 ~~v~~~~~~G~~v~vWTVn~~~~~~~l~~~~GVd-ii 254 (258)
T cd08573 219 AYVRYWRARGIRVIAWTVNTPTEKQYFAKTLNVP-YI 254 (258)
T ss_pred HHHHHHHHCCCEEEEEecCCHHHHHHHHHHhCCC-ee
Confidence 6899999999999999987 799999999 9999 54
No 485
>cd08563 GDPD_TtGDE_like Glycerophosphodiester phosphodiesterase domain of Thermoanaerobacter tengcongensis and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in Thermoanaerobacter tengcongensis glycerophosphodiester phosphodiesterase (TtGDE, EC 3.1.4.46) and its uncharacterized homologs. Members in this family show high sequence similarity to Escherichia coli GP-GDE, which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. Despite the fact that most of GDPD family members exist as the monomer, TtGDE can function as a dimeric unit. Its catalytic mechanism is based on the general base-acid catalysis, which is similar to that of phosphoinositide-specific phospholipases C (PI-PLCs, EC 3.1.4.11). A divalent metal cation is required for the enzyme activity of TtGDE.
Probab=58.07 E-value=12 Score=38.19 Aligned_cols=36 Identities=22% Similarity=0.449 Sum_probs=33.1
Q ss_pred HHHHHHHHcCCcccccccC-HHHHHHHHhccCcEEEe
Q 004491 619 EMIDKAHKMGLLTTPYAFN-EGEAVKMAKAGADIIVA 654 (749)
Q Consensus 619 emi~~A~~~gl~T~~yvf~-~eqa~~Ma~AGaDiiv~ 654 (749)
++++.+|+.|+....|.+| ++++++|.+.|+|.|+.
T Consensus 191 ~~i~~~~~~g~~v~~Wtvn~~~~~~~~~~~GVdgi~T 227 (230)
T cd08563 191 EVVEELKKRGIPVRLWTVNEEEDMKRLKDLGVDGIIT 227 (230)
T ss_pred HHHHHHHHCCCEEEEEecCCHHHHHHHHHCCCCEEeC
Confidence 6899999999999999987 79999999999999874
No 486
>PRK15452 putative protease; Provisional
Probab=57.94 E-value=51 Score=38.14 Aligned_cols=156 Identities=16% Similarity=0.116 Sum_probs=91.8
Q ss_pred CeEEeccccchhhhhhhhcCCcEEEEeccccccccCCccccccccccCchHHHHHhhhhhcCCCCCCceEEeecc---CC
Q 004491 494 PIIGAGAGTGISAKFEEAGGVDLIVLYNSGRFRMAGRGSLAGLLPFADANAVVLEMANEVLPVVKEVPVLAGVCG---TD 570 (749)
Q Consensus 494 piig~gaGtGlsAk~ae~gGaDli~~ynsGrfR~~G~~SlagllpygdaN~iv~e~~~eilp~v~~tPViaGv~a---tD 570 (749)
|=+=+-||+=-.+|.|-..|||-|.+ -..+|.+-.+ +..+.+.+--+ .++++++ ....|..-++. .+
T Consensus 4 peLlapag~~e~l~aAi~~GADaVY~-G~~~~~~R~~---~~~f~~edl~e-av~~ah~-----~g~kvyvt~n~i~~e~ 73 (443)
T PRK15452 4 PELLSPAGTLKNMRYAFAYGADAVYA-GQPRYSLRVR---NNEFNHENLAL-GINEAHA-----LGKKFYVVVNIAPHNA 73 (443)
T ss_pred cEEEEECCCHHHHHHHHHCCCCEEEE-CCCccchhhh---ccCCCHHHHHH-HHHHHHH-----cCCEEEEEecCcCCHH
Confidence 55667788888999999999999875 2223333222 11111111111 1223332 22334443321 22
Q ss_pred CCCCHHHHHHHHHHcCccceecCCcccccchhhhhhhhhcCCchHHHHHHHHHHHHcC------CcccccccCHHHHHHH
Q 004491 571 PFRRVDYFLKQLESIGFFGVQNFPTVGLFDGNFRQNLEETGMGYGLEVEMIDKAHKMG------LLTTPYAFNEGEAVKM 644 (749)
Q Consensus 571 P~~~~~~~l~~lk~~Gf~GV~NfPTvgliDG~fR~~LEe~G~gy~~EVemi~~A~~~g------l~T~~yvf~~eqa~~M 644 (749)
-+..+..+|+++.++|+.||.= +++ .+++.+++.. .=|-.++||.+.++.+
T Consensus 74 el~~~~~~l~~l~~~gvDgvIV------------~d~-----------G~l~~~ke~~p~l~ih~stqlni~N~~a~~f~ 130 (443)
T PRK15452 74 KLKTFIRDLEPVIAMKPDALIM------------SDP-----------GLIMMVREHFPEMPIHLSVQANAVNWATVKFW 130 (443)
T ss_pred HHHHHHHHHHHHHhCCCCEEEE------------cCH-----------HHHHHHHHhCCCCeEEEEecccCCCHHHHHHH
Confidence 3445666788888999888641 122 3445555542 2366789999999999
Q ss_pred HhccCcEEEeccCCCcccccccccccCHHHHHHHHHHHHHHHHHhCCCeEEEEccC
Q 004491 645 AKAGADIIVAHMGLTTSGSIGAKTALSLDESVDRVQAIADAAHRINPDAIVLCHGG 700 (749)
Q Consensus 645 a~AGaDiiv~h~GlT~gG~~Ga~~~~sl~~~~~~~~~i~~aa~~~~pdii~l~hGG 700 (749)
.+.|++-+|+..-| |++| +++|.+.+ -+.++=+++||-
T Consensus 131 ~~lG~~rvvLSrEL------------sl~E----I~~i~~~~--~~~elEvfVHGa 168 (443)
T PRK15452 131 QQMGLTRVILSREL------------SLEE----IEEIRQQC--PDMELEVFVHGA 168 (443)
T ss_pred HHCCCcEEEECCcC------------CHHH----HHHHHhhC--CCCCEEEEEEcc
Confidence 99999999987644 4554 33442211 245667889985
No 487
>TIGR02134 transald_staph transaldolase. This small family of proteins is a member of the transaldolase sybfamily represented by pfam00923. Coxiella and Staphylococcus lack members of the known transaldolase equivalog families and appear to require a transaldolase activity for completion of the pentose phosphate pathway.
Probab=57.90 E-value=88 Score=33.51 Aligned_cols=100 Identities=12% Similarity=0.101 Sum_probs=66.5
Q ss_pred HHHHHHHHHcCCccc-ccccCHHHHHHHH---hcc-CcEEEeccCCCcccccccccccCHHHHHHHHHHHHHHHHHhCCC
Q 004491 618 VEMIDKAHKMGLLTT-PYAFNEGEAVKMA---KAG-ADIIVAHMGLTTSGSIGAKTALSLDESVDRVQAIADAAHRINPD 692 (749)
Q Consensus 618 Vemi~~A~~~gl~T~-~yvf~~eqa~~Ma---~AG-aDiiv~h~GlT~gG~~Ga~~~~sl~~~~~~~~~i~~aa~~~~pd 692 (749)
++.|++.++.|+-+. --||++.||...+ ++| |++|.+.+|.-.- .-.|....+++|.+..+.. ++
T Consensus 102 l~ai~~L~~~GI~vn~T~vfs~~Qa~~aa~A~~aG~a~yispfvgR~dd---------~g~D~~~~i~~i~~i~~~~-~~ 171 (236)
T TIGR02134 102 GPLIQKLSADGITLNVTALTTIEQVEKVCQSFTDGVPGIVSVFAGRIAD---------TGVDPEPHMREALEIVAQK-PG 171 (236)
T ss_pred HHHHHHHHHCCCcEEeehcCCHHHHHHHHHHHhCCCCeEEEEecchhhh---------cCCCcHHHHHHHHHHHHhC-CC
Confidence 678888999998664 4599999999855 589 6999999996521 1112334455555555443 56
Q ss_pred eEEEEccCCCCCHHHHHHHHhhCCCccEE-ecCcccccch
Q 004491 693 AIVLCHGGPISSPSEAEFILKRTKGVHGF-YGASSMERLP 731 (749)
Q Consensus 693 ii~l~hGGPi~~p~d~~~~l~~~~~~~Gf-~g~Ss~ERlP 731 (749)
.=+| ..-|.+|.++..... .++|-+ +.-.-++++.
T Consensus 172 tkIL--aAS~R~~~~v~~a~~--~Gad~vTvp~~v~~~l~ 207 (236)
T TIGR02134 172 VELL--WASPRELFNIIQADR--IGCDIITCAHDILAKLP 207 (236)
T ss_pred cEEE--EEccCCHHHHHHHHH--cCCCEEECCHHHHHHHH
Confidence 6666 456788888888763 467765 4444555553
No 488
>PF02679 ComA: (2R)-phospho-3-sulfolactate synthase (ComA); InterPro: IPR003830 Methanogenic archaea produce methane via the anaerobic reduction of acetate or single carbon compounds []. Coenzyme M (CoM; 2-mercaptoethanesulphonic acid) serves as the terminal methyl carrier for this process. Previously thought to be unique to methanogenic archaea, CoM has also been found in methylotrophic bacteria. Biosynthesis of CoM begins with the Michael addition of sulphite to phosphoenolpyruvate, forming 2-phospho-3-sulpholactate (PSL). This reaction is catalyzed by members of this family, PSL synthase (ComA) []. Subsequently, PSL is dephosphorylated by phosphosulpholactate phosphatase (ComB) to form 3-sulpholactate [], which is then converted to 3-sulphopyruvate by L-sulpholactate dehydrogenase (ComC; 1.1.1.272 from EC) []. Sulphopyruvate decarboxylase (ComDE; 4.1.1.79 from EC) converts 3-sulphopyruvate to sulphoacetaldehyde []. Reductive thiolation of sulphoacetaldehyde is the final step.; GO: 0019295 coenzyme M biosynthetic process; PDB: 1U83_A 1QWG_A.
Probab=57.87 E-value=15 Score=39.43 Aligned_cols=83 Identities=23% Similarity=0.302 Sum_probs=52.7
Q ss_pred CCceEEe-----eccCCCCCCHHHHHHHHHHcCccceecCCcccccchhhhhhhhhcCCchHHHHHHHHHHHHcCCcccc
Q 004491 559 EVPVLAG-----VCGTDPFRRVDYFLKQLESIGFFGVQNFPTVGLFDGNFRQNLEETGMGYGLEVEMIDKAHKMGLLTTP 633 (749)
Q Consensus 559 ~tPViaG-----v~atDP~~~~~~~l~~lk~~Gf~GV~NfPTvgliDG~fR~~LEe~G~gy~~EVemi~~A~~~gl~T~~ 633 (749)
+++|..| ++.. --.+++|++.+|++||..|- +=||.+ .|..+.=.++|++|++.||..++
T Consensus 67 gV~v~~GGtl~E~a~~--q~~~~~yl~~~k~lGf~~IE------iSdGti-------~l~~~~r~~~I~~~~~~Gf~v~~ 131 (244)
T PF02679_consen 67 GVYVYPGGTLFEVAYQ--QGKFDEYLEECKELGFDAIE------ISDGTI-------DLPEEERLRLIRKAKEEGFKVLS 131 (244)
T ss_dssp T-EEEE-HHHHHHHHH--TT-HHHHHHHHHHCT-SEEE------E--SSS----------HHHHHHHHHHHCCTTSEEEE
T ss_pred CCeEeCCcHHHHHHHh--cChHHHHHHHHHHcCCCEEE------ecCCce-------eCCHHHHHHHHHHHHHCCCEEee
Confidence 5666666 3334 34789999999999998764 233432 23345556789999999988765
Q ss_pred ccc--------------CHHHHHHHHhccCcEEEecc
Q 004491 634 YAF--------------NEGEAVKMAKAGADIIVAHM 656 (749)
Q Consensus 634 yvf--------------~~eqa~~Ma~AGaDiiv~h~ 656 (749)
=|- =.+++++-.+||||.+++--
T Consensus 132 EvG~K~~~~~~~~~~~~~i~~~~~dLeAGA~~ViiEa 168 (244)
T PF02679_consen 132 EVGKKDPESDFSLDPEELIEQAKRDLEAGADKVIIEA 168 (244)
T ss_dssp EES-SSHHHHTT--CCHHHHHHHHHHHHTECEEEE--
T ss_pred cccCCCchhcccCCHHHHHHHHHHHHHCCCCEEEEee
Confidence 432 13677788899999998753
No 489
>cd00408 DHDPS-like Dihydrodipicolinate synthase family. A member of the class I aldolases, which use an active-site lysine which stablilzes a reaction intermediate via Schiff base formation, and have TIM beta/alpha barrel fold. The dihydrodipicolinate synthase family comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways and includes such proteins as N-acetylneuraminate lyase, MosA protein, 5-keto-4-deoxy-glucarate dehydratase, trans-o-hydroxybenzylidenepyruvate hydratase-aldolase, trans-2'-carboxybenzalpyruvate hydratase-aldolase, and 2-keto-3-deoxy- gluconate aldolase. The family is also referred to as the N-acetylneuraminate lyase (NAL) family.
Probab=57.80 E-value=27 Score=36.93 Aligned_cols=74 Identities=16% Similarity=0.310 Sum_probs=0.0
Q ss_pred ccccHHHHHHHHHHHhhcCCCeEEeccccchhh------hhhhhcCCcEEEEeccccccccCCccccccccccCchHHHH
Q 004491 474 TLQRTQAILSKLKYQIDKGLPIIGAGAGTGISA------KFEEAGGVDLIVLYNSGRFRMAGRGSLAGLLPFADANAVVL 547 (749)
Q Consensus 474 ~~~~r~~il~~L~~~i~~~~piig~gaGtGlsA------k~ae~gGaDli~~ynsGrfR~~G~~SlagllpygdaN~iv~ 547 (749)
|.-.|+++++...+.++.+.||+ +|+|+.-+. |.+++.|||-|++..--.|+. +++-+.
T Consensus 48 s~~Er~~l~~~~~~~~~~~~~vi-~gv~~~~~~~~i~~a~~a~~~Gad~v~v~pP~y~~~--------------~~~~~~ 112 (281)
T cd00408 48 TDEERKEVIEAVVEAVAGRVPVI-AGVGANSTREAIELARHAEEAGADGVLVVPPYYNKP--------------SQEGIV 112 (281)
T ss_pred CHHHHHHHHHHHHHHhCCCCeEE-EecCCccHHHHHHHHHHHHHcCCCEEEECCCcCCCC--------------CHHHHH
Q ss_pred HhhhhhcCCCCCCceE
Q 004491 548 EMANEVLPVVKEVPVL 563 (749)
Q Consensus 548 e~~~eilp~v~~tPVi 563 (749)
+.-++|.-. -++||+
T Consensus 113 ~~~~~ia~~-~~~pi~ 127 (281)
T cd00408 113 AHFKAVADA-SDLPVI 127 (281)
T ss_pred HHHHHHHhc-CCCCEE
No 490
>cd07938 DRE_TIM_HMGL 3-hydroxy-3-methylglutaryl-CoA lyase, catalytic TIM barrel domain. 3-hydroxy-3-methylglutaryl-CoA lyase (HMGL) catalyzes the cleavage of HMG-CoA to acetyl-CoA and acetoacetate, one of the terminal steps in ketone body generation and leucine degradation, and is a key enzyme in the pathway that supplies metabolic fuel to extrahepatic tissues. Mutations in HMGL cause a human autosomal recessive disorder called primary metabolic aciduria that affects ketogenesis and leucine catabolism and can be fatal due to an inability to tolerate hypoglycemia. HMGL has a TIM barrel domain with a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. The cleavage of HMG-CoA requires the presence of a divalent cation like Mg2+ or Mn2+, and the reaction is thought to involve general acid/base catalysis. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropy
Probab=57.76 E-value=54 Score=35.28 Aligned_cols=144 Identities=16% Similarity=0.199 Sum_probs=82.4
Q ss_pred CHHHHHHHHHHcCcccee--cCCcccccchhhhhhhhhcCCchHHHHHHHHHHHH-cCCcccccccCHHHHHHHHhccCc
Q 004491 574 RVDYFLKQLESIGFFGVQ--NFPTVGLFDGNFRQNLEETGMGYGLEVEMIDKAHK-MGLLTTPYAFNEGEAVKMAKAGAD 650 (749)
Q Consensus 574 ~~~~~l~~lk~~Gf~GV~--NfPTvgliDG~fR~~LEe~G~gy~~EVemi~~A~~-~gl~T~~yvf~~eqa~~Ma~AGaD 650 (749)
..-++.+.|-+.||.=|. +|++-..+ -+ |+ +.| ++++...+ .+.--++++-+.++.++..++|+|
T Consensus 21 ~K~~i~~~L~~~Gv~~IEvGs~~~~~~~-p~---------~~-d~~-~~~~~l~~~~~~~~~~~~~~~~dv~~A~~~g~~ 88 (274)
T cd07938 21 DKIELIDALSAAGLRRIEVTSFVSPKWV-PQ---------MA-DAE-EVLAGLPRRPGVRYSALVPNLRGAERALAAGVD 88 (274)
T ss_pred HHHHHHHHHHHcCCCEEEeCCCCCcccc-cc---------cC-CHH-HHHhhcccCCCCEEEEECCCHHHHHHHHHcCcC
Confidence 445788889999876542 22111111 01 11 122 33443322 244446667899999999999999
Q ss_pred EEEeccCCCcccccccccccCHHHHHHHHHHHHHHHHHhCCCeE---EEEccCCCC---CHHHHHHHHhhC--CCccEEe
Q 004491 651 IIVAHMGLTTSGSIGAKTALSLDESVDRVQAIADAAHRINPDAI---VLCHGGPIS---SPSEAEFILKRT--KGVHGFY 722 (749)
Q Consensus 651 iiv~h~GlT~gG~~Ga~~~~sl~~~~~~~~~i~~aa~~~~pdii---~l~hGGPi~---~p~d~~~~l~~~--~~~~Gf~ 722 (749)
.|..=+..+-. .+=.+...|.++..+++.+..+.+++....+. ..++|.|.. +|+.+..+.+.. .+++-++
T Consensus 89 ~i~i~~~~Sd~-~~~~~~~~s~~~~~~~~~~~v~~ak~~G~~v~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~Ga~~i~ 167 (274)
T cd07938 89 EVAVFVSASET-FSQKNINCSIAESLERFEPVAELAKAAGLRVRGYVSTAFGCPYEGEVPPERVAEVAERLLDLGCDEIS 167 (274)
T ss_pred EEEEEEecCHH-HHHHHcCCCHHHHHHHHHHHHHHHHHCCCeEEEEEEeEecCCCCCCCCHHHHHHHHHHHHHcCCCEEE
Confidence 86554443321 22234456789999999999999999887663 234565554 444444444332 2345554
Q ss_pred cCcccccc
Q 004491 723 GASSMERL 730 (749)
Q Consensus 723 g~Ss~ERl 730 (749)
=+-+.-.+
T Consensus 168 l~DT~G~~ 175 (274)
T cd07938 168 LGDTIGVA 175 (274)
T ss_pred ECCCCCcc
Confidence 44444443
No 491
>PLN02424 ketopantoate hydroxymethyltransferase
Probab=57.74 E-value=74 Score=35.78 Aligned_cols=115 Identities=22% Similarity=0.291 Sum_probs=74.3
Q ss_pred HHHHHHHHHHc-CCcccccccCHHHHHHHHhccCcEEEe--ccCCCcccccccccccCHHHHHHHHHHHHHHHHHhCCCe
Q 004491 617 EVEMIDKAHKM-GLLTTPYAFNEGEAVKMAKAGADIIVA--HMGLTTSGSIGAKTALSLDESVDRVQAIADAAHRINPDA 693 (749)
Q Consensus 617 EVemi~~A~~~-gl~T~~yvf~~eqa~~Ma~AGaDiiv~--h~GlT~gG~~Ga~~~~sl~~~~~~~~~i~~aa~~~~pdi 693 (749)
-+.-|++.|+. .-+++.-+||.-.|+.+.+||+|+|.+ ++|-+.-|.-. ...+|+|+.+..++.+.+.+ +..
T Consensus 23 ti~~l~~~k~~g~kivmlTAyD~~sA~i~d~aGvD~ILVGDSlgmv~lG~~~-T~~Vtld~mi~H~~aV~Rga----~~a 97 (332)
T PLN02424 23 TLRTLRQKYRRGEPITMVTAYDYPSAVHVDSAGIDVCLVGDSAAMVVHGHDT-TLPITLDEMLVHCRAVARGA----NRP 97 (332)
T ss_pred CHHHHHHHHhCCCcEEEEecCCHHHHHHHHHcCCCEEEECCcHHHHhcCCCC-CCCcCHHHHHHHHHHHhccC----CCC
Confidence 36668888877 489999999999999999999999986 34433333322 22589999999999886554 233
Q ss_pred EEEE--ccCCC-CCHHH----HHHHHhhCCCccEEe-cCcccccchHHHHHH
Q 004491 694 IVLC--HGGPI-SSPSE----AEFILKRTKGVHGFY-GASSMERLPVEQAIT 737 (749)
Q Consensus 694 i~l~--hGGPi-~~p~d----~~~~l~~~~~~~Gf~-g~Ss~ERlP~E~ai~ 737 (749)
++++ --|.- .+|++ +..+++. .++++.- =+.+-|++++=+++.
T Consensus 98 ~vVaDmPfgSY~~s~e~av~nA~rl~~e-aGa~aVKlEGg~~~~~~~I~~l~ 148 (332)
T PLN02424 98 LLVGDLPFGSYESSTDQAVESAVRMLKE-GGMDAVKLEGGSPSRVTAAKAIV 148 (332)
T ss_pred EEEeCCCCCCCCCCHHHHHHHHHHHHHH-hCCcEEEECCCcHHHHHHHHHHH
Confidence 4431 11112 37777 5667665 5666653 222244555444443
No 492
>cd07364 PCA_45_Dioxygenase_B Subunit B of the Class III extradiol dioxygenase, Protocatechuate 4,5-dioxygenase, which catalyzes the oxidization and subsequent ring-opening of protocatechuate. Protocatechuate 4,5-dioxygenase (LigAB) catalyzes the oxidization and subsequent ring-opening of protocatechuate (or 3,4-dihydroxybenzoic acid, PCA), an intermediate in the breakdown of lignin and other compounds. Protocatechuate 4,5-dioxygenase is an aromatic ring opening dioxygenase belonging to the class III extradiol enzyme family, a group of enyzmes that cleaves aromatic rings between a hydroxylated carbon and an adjacent non-hydroxylated carbon using a non-heme Fe(II). LigAB is composed of two subunits, designated A and B, which form a tetramer composed of two copies of each subunit. The B subunit (LigB) is the catalytic subunit of LigAB.
Probab=57.67 E-value=1.8e+02 Score=31.56 Aligned_cols=166 Identities=10% Similarity=0.062 Sum_probs=90.7
Q ss_pred chHHHHHHHHHHHhcCccEEEEecCCCchHHHHHHHHcCCceEEEeCchhhh-hhhhhC-Ccc--CCCCc----hh-hhh
Q 004491 220 TTPCVNAVKERLEKEGYETMVFHATGVGGRAMEALVKEGFIQGVLDITTTEV-ADYVVG-GVM--ACDSS----RF-DAT 290 (749)
Q Consensus 220 TTp~V~~~r~~Le~~GyEvlVFHATG~GGrAME~Li~eG~~~gVlDlTttEl-aD~l~G-Gv~--saGp~----RL-~AA 290 (749)
|-.+...+++++++...||+|.=.+=. ++.+-.+-.=.-.+...-+.. .++-+| +.. ..|.. ++ +.+
T Consensus 33 ~~~a~~~~~~~~~~~~pD~vVvi~~dH----~~~f~~~~~P~f~i~~~~~~~~~~~~~g~~~~~~~~g~~~LA~~i~~~~ 108 (277)
T cd07364 33 LFKGYQPARDWIKKNKPDVAIIVYNDH----ASAFDLDIIPTFAIGTAEEFQPADEGYGPRPVPDVQGHPDLAWHIAQSL 108 (277)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEEcCch----HHhhcccCCCceEEeeccccccCccccCCCCCCCCCCCHHHHHHHHHHH
Confidence 335677888999988899887722222 111111111112222222111 112222 110 12222 22 233
Q ss_pred hhcCCCeEEecCccccccCCCCCCCCccccCCceeeec-CcceE-------EecCHHHHHHHHHHHHHHHccCC-CCeEE
Q 004491 291 IEKKIPLVLSVGALDMVNFGAKDTIPSKFQRRKIHVHN-QQVSL-------MRTTVDENKKFAAFIANKLNQSS-SKIRL 361 (749)
Q Consensus 291 ~~~GIPqVVspGalDmVnFG~~dtvPe~f~~R~~~~HN-p~vTl-------mRTt~eE~~~ig~~iA~kLn~a~-gpv~v 361 (749)
.+.|||...+..- =++-|. .+|=+|-........ |.|-+ .-.+++++.++|+.|++-+.+.. ..-.+
T Consensus 109 ~~~g~~~~~~~~~--~lDHG~--~vPL~~l~p~~~~~p~pVV~vsvn~~~~p~~~~~~~~~lG~al~~~i~~~~rd~rV~ 184 (277)
T cd07364 109 ILDDFDMTIVNEM--DVDHGL--TVPLSIMYGQPEAWPCKVIPLCVNVVQYPQPTGKRCFALGKAIRRAVESYDEDLKVA 184 (277)
T ss_pred HHcCCCEEecCCC--CCCcch--hhhHHHhCCccccCCCCeEEEEeccCCCCCCCHHHHHHHHHHHHHHHHhcCcCCCEE
Confidence 4679998766532 122222 466666544322111 12211 11478999999999999988763 44568
Q ss_pred EeeCCCCccc-CCCCCCCCChhhhHHHHHHHHH
Q 004491 362 CLPQNGISAL-DAPGKPFYDPEATGTLISELRT 393 (749)
Q Consensus 362 llP~~G~S~l-D~~G~pf~DPeAd~al~~~L~~ 393 (749)
+|=.||+|+. ..++..+++++=|+.+.+.|++
T Consensus 185 iIaSG~lSH~L~~~~~g~~~~eFD~~i~~~l~~ 217 (277)
T cd07364 185 IWGTGGMSHQLQGERAGLINKEFDNRFLDKLIS 217 (277)
T ss_pred EEecCccccCCCCCCccCchHHHHHHHHHHHHh
Confidence 8999999988 2233447788999999998885
No 493
>COG1794 RacX Aspartate racemase [Cell envelope biogenesis, outer membrane]
Probab=57.65 E-value=54 Score=35.05 Aligned_cols=128 Identities=26% Similarity=0.319 Sum_probs=81.1
Q ss_pred hhhhhhhcCCcEEEEeccccccccCCccccccccccCchHHHHHhhhhhcCCCCCCceEEeeccCCCCCCHHHHHHHHHH
Q 004491 505 SAKFEEAGGVDLIVLYNSGRFRMAGRGSLAGLLPFADANAVVLEMANEVLPVVKEVPVLAGVCGTDPFRRVDYFLKQLES 584 (749)
Q Consensus 505 sAk~ae~gGaDli~~ynsGrfR~~G~~SlagllpygdaN~iv~e~~~eilp~v~~tPViaGv~atDP~~~~~~~l~~lk~ 584 (749)
.||.-|++|||||++= ||..= -.+.+|-+.++ +|+|- -.|.=.+++|.
T Consensus 67 ~a~~Le~~GAd~i~l~---------------------~NT~H-~~~d~iq~~~~-iPllh---------IidaTa~~ik~ 114 (230)
T COG1794 67 AAKKLERAGADFIVLP---------------------TNTMH-KVADDIQKAVG-IPLLH---------IIDATAKAIKA 114 (230)
T ss_pred HHHHHHhcCCCEEEEe---------------------CCcHH-HHHHHHHHhcC-CCeeh---------HHHHHHHHHHh
Confidence 5788899999999952 22211 13456666653 77663 35666788888
Q ss_pred cCccceecCCccc-ccchhhhhhhhhcCCch-------HHHHHHHHHH-HHcCCcc-cccccCHHHHHHHHhccCcEEEe
Q 004491 585 IGFFGVQNFPTVG-LFDGNFRQNLEETGMGY-------GLEVEMIDKA-HKMGLLT-TPYAFNEGEAVKMAKAGADIIVA 654 (749)
Q Consensus 585 ~Gf~GV~NfPTvg-liDG~fR~~LEe~G~gy-------~~EVemi~~A-~~~gl~T-~~yvf~~eqa~~Ma~AGaDiiv~ 654 (749)
.|+.=|-=.=|.. +-+|.||+.|++.|+-- ..+|.-|=.. -+.|-++ ...-+=.+.+++..+-|||.++
T Consensus 115 ~g~kkvgLLgT~~Tm~~~fY~~~l~~~gievvvPdd~~q~~v~~iIy~El~~G~~~~~sr~~~~~ii~~l~~~Gae~vI- 193 (230)
T COG1794 115 AGAKKVGLLGTRFTMEQGFYRKRLEEKGIEVVVPDDDEQAEVNRIIYEELCQGIVKDASRELYLAVIERLAERGAEGVI- 193 (230)
T ss_pred cCCceeEEeeccchHHhHHHHHHHHHCCceEecCCHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHcCCCEEE-
Confidence 8887776665543 44588899999888431 2233222111 3455555 4444446788999999999988
Q ss_pred ccCCCccccccc
Q 004491 655 HMGLTTSGSIGA 666 (749)
Q Consensus 655 h~GlT~gG~~Ga 666 (749)
+|.|.=+.+=.
T Consensus 194 -lGCTEi~lll~ 204 (230)
T COG1794 194 -LGCTEIPLLLS 204 (230)
T ss_pred -Eeccchheeec
Confidence 46676555543
No 494
>cd06271 PBP1_AglR_RafR_like Ligand-binding domain of DNA transcription repressors specific for raffinose (RafR) and alpha-glucosides (AglR) which are members of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressors specific for raffinose (RafR) and alpha-glucosides (AglR) which are members of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the represso
Probab=57.54 E-value=42 Score=33.62 Aligned_cols=68 Identities=22% Similarity=0.386 Sum_probs=46.6
Q ss_pred hHHHHHHHHHHHhcCccEEEEecCCC--chHHHHHHHHcCCceEEEeCchhhhhhhhhCCccCCCCchhhhhhhcCCCeE
Q 004491 221 TPCVNAVKERLEKEGYETMVFHATGV--GGRAMEALVKEGFIQGVLDITTTEVADYVVGGVMACDSSRFDATIEKKIPLV 298 (749)
Q Consensus 221 Tp~V~~~r~~Le~~GyEvlVFHATG~--GGrAME~Li~eG~~~gVlDlTttElaD~l~GGv~saGp~RL~AA~~~GIPqV 298 (749)
..-...+.+.+++.||++.++.+..- .=+..++++.++.+||++=..+. ....++..+.+.+||.|
T Consensus 19 ~~~~~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~vdgiii~~~~------------~~~~~~~~~~~~~ipvV 86 (268)
T cd06271 19 AEFLSGLSEALAEHGYDLVLLPVDPDEDPLEVYRRLVESGLVDGVIISRTR------------PDDPRVALLLERGFPFV 86 (268)
T ss_pred HHHHHHHHHHHHHCCceEEEecCCCcHHHHHHHHHHHHcCCCCEEEEecCC------------CCChHHHHHHhcCCCEE
Confidence 34566777888889999988876543 12467778888889999832221 11235666778999988
Q ss_pred Ee
Q 004491 299 LS 300 (749)
Q Consensus 299 Vs 300 (749)
+.
T Consensus 87 ~~ 88 (268)
T cd06271 87 TH 88 (268)
T ss_pred EE
Confidence 74
No 495
>PRK12376 putative translaldolase; Provisional
Probab=57.36 E-value=57 Score=34.82 Aligned_cols=99 Identities=14% Similarity=0.149 Sum_probs=67.2
Q ss_pred HHHHHHHHHcCCccc-ccccCHHHHHHHHhc----cCcEEEeccCCCcccccccccccCHHHHHHHHHHHHHHHHHhCCC
Q 004491 618 VEMIDKAHKMGLLTT-PYAFNEGEAVKMAKA----GADIIVAHMGLTTSGSIGAKTALSLDESVDRVQAIADAAHRINPD 692 (749)
Q Consensus 618 Vemi~~A~~~gl~T~-~yvf~~eqa~~Ma~A----GaDiiv~h~GlT~gG~~Ga~~~~sl~~~~~~~~~i~~aa~~~~pd 692 (749)
++.|++-.+.|+-+. --||++.||.+-++| |||.|-+.+|.-.- .| .|....+++|.+..+. .++
T Consensus 102 l~Ai~~L~~~GI~vn~T~vfs~~Qa~~a~~A~ag~ga~yispfvgR~dd--~g-------~D~~~~i~~i~~i~~~-~~~ 171 (236)
T PRK12376 102 IPLIKKLSADGVKLNVTAIFTIEQVKEVVDALTPGVPAIVSVFAGRIAD--TG-------VDPVPLMKEALAICHS-KPG 171 (236)
T ss_pred HHHHHHHHHCCCeEEEeeecCHHHHHHHHHHhcCCCCeEEEEecchhhh--cC-------CCcHHHHHHHHHHHHh-CCC
Confidence 567888888898743 469999999866555 69999999997632 11 1234555556555555 377
Q ss_pred eEEEEccCCCCCHHHHHHHHhhCCCccEEe-cCcccccc
Q 004491 693 AIVLCHGGPISSPSEAEFILKRTKGVHGFY-GASSMERL 730 (749)
Q Consensus 693 ii~l~hGGPi~~p~d~~~~l~~~~~~~Gf~-g~Ss~ERl 730 (749)
+=+| ..-|.+|+++...+. .++|-+= .-.-++.+
T Consensus 172 tkIL--aASiR~~~~v~~a~~--~Gad~vTvp~~v~~~l 206 (236)
T PRK12376 172 VELL--WASPREVYNIIQADQ--LGCDIITVTPDVLKKL 206 (236)
T ss_pred cEEE--EEecCCHHHHHHHHH--cCCCEEEcCHHHHHHH
Confidence 7777 457888998888874 4666553 34455554
No 496
>PRK09140 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; Reviewed
Probab=57.26 E-value=1.1e+02 Score=31.59 Aligned_cols=112 Identities=14% Similarity=0.109 Sum_probs=67.1
Q ss_pred CCCCHHHHHHHHHHcCccceecCCcccccchhhhhhhhhcCCchHHHHHHHHHHHHcC-CcccccccCHHHHHHHHhccC
Q 004491 571 PFRRVDYFLKQLESIGFFGVQNFPTVGLFDGNFRQNLEETGMGYGLEVEMIDKAHKMG-LLTTPYAFNEGEAVKMAKAGA 649 (749)
Q Consensus 571 P~~~~~~~l~~lk~~Gf~GV~NfPTvgliDG~fR~~LEe~G~gy~~EVemi~~A~~~g-l~T~~yvf~~eqa~~Ma~AGa 649 (749)
+.-+..+..+.+.+-|+.-++ +|. ++-+-...++.|++.+... +.-.+=|.+.+|+++-.+|||
T Consensus 20 ~~~~~~~~~~a~~~gGi~~iE-----------vt~----~~~~~~~~i~~l~~~~~~~~~iGaGTV~~~~~~~~a~~aGA 84 (206)
T PRK09140 20 TPDEALAHVGALIEAGFRAIE-----------IPL----NSPDPFDSIAALVKALGDRALIGAGTVLSPEQVDRLADAGG 84 (206)
T ss_pred CHHHHHHHHHHHHHCCCCEEE-----------EeC----CCccHHHHHHHHHHHcCCCcEEeEEecCCHHHHHHHHHcCC
Confidence 556677778899999988665 110 1111122555555544322 333455899999999999999
Q ss_pred cEEEeccCCCcccccccccccCHHHHHHHHHHHHHHHHHhCCCeEEEEccCCCCCHHHHHHHHhhCCCccEEec
Q 004491 650 DIIVAHMGLTTSGSIGAKTALSLDESVDRVQAIADAAHRINPDAIVLCHGGPISSPSEAEFILKRTKGVHGFYG 723 (749)
Q Consensus 650 Diiv~h~GlT~gG~~Ga~~~~sl~~~~~~~~~i~~aa~~~~pdii~l~hGGPi~~p~d~~~~l~~~~~~~Gf~g 723 (749)
|-|+. + +. + .++.+++++.+..++.=|| ||+|++.-++.-....+||-
T Consensus 85 ~fivs--p----~~-------~--------~~v~~~~~~~~~~~~~G~~-----t~~E~~~A~~~Gad~vk~Fp 132 (206)
T PRK09140 85 RLIVT--P----NT-------D--------PEVIRRAVALGMVVMPGVA-----TPTEAFAALRAGAQALKLFP 132 (206)
T ss_pred CEEEC--C----CC-------C--------HHHHHHHHHCCCcEEcccC-----CHHHHHHHHHcCCCEEEECC
Confidence 99876 1 11 1 3455556666555555444 77777776655444445443
No 497
>PRK08227 autoinducer 2 aldolase; Validated
Probab=57.21 E-value=99 Score=33.61 Aligned_cols=127 Identities=17% Similarity=0.216 Sum_probs=73.4
Q ss_pred hcCCCCCCceEEeeccC-----CCC-CCHHHHHHHHHHcCccceecCCcccccchhhhhhhhhcCCchHHHHHHHHHHHH
Q 004491 553 VLPVVKEVPVLAGVCGT-----DPF-RRVDYFLKQLESIGFFGVQNFPTVGLFDGNFRQNLEETGMGYGLEVEMIDKAHK 626 (749)
Q Consensus 553 ilp~v~~tPViaGv~at-----DP~-~~~~~~l~~lk~~Gf~GV~NfPTvgliDG~fR~~LEe~G~gy~~EVemi~~A~~ 626 (749)
..|..+++|+|-=+++. ||. ..+-.=.++--++|-.+|.=.=-+| +-.-++.|++.| +..++|++
T Consensus 68 ~~~~~~~~~lil~ls~~t~~~~~~~~~~l~~sVeeAvrlGAdAV~~~v~~G--s~~E~~~l~~l~-------~v~~ea~~ 138 (264)
T PRK08227 68 VVPPATNKPVVLRASGGNSILKELSNEAVAVDMEDAVRLNACAVAAQVFIG--SEYEHQSIKNII-------QLVDAGLR 138 (264)
T ss_pred cccccCCCcEEEEEcCCCCCCCCCCcccceecHHHHHHCCCCEEEEEEecC--CHHHHHHHHHHH-------HHHHHHHH
Confidence 44455677877766664 232 2233335677788988775322222 222244444332 45689999
Q ss_pred cCCcccccccCH-H------H-----HHHHHhccCcEEEeccCCCcccccccccccCHHHHHHHHHHHHHHHHHhCCCeE
Q 004491 627 MGLLTTPYAFNE-G------E-----AVKMAKAGADIIVAHMGLTTSGSIGAKTALSLDESVDRVQAIADAAHRINPDAI 694 (749)
Q Consensus 627 ~gl~T~~yvf~~-e------q-----a~~Ma~AGaDiiv~h~GlT~gG~~Ga~~~~sl~~~~~~~~~i~~aa~~~~pdii 694 (749)
.||..++ ++-. + + ||.-+|-|||||=... + . +...++.++| | +-
T Consensus 139 ~G~Plla-~~prG~~~~~~~~~ia~aaRiaaELGADiVK~~y--------------~-~---~~f~~vv~a~----~-vP 194 (264)
T PRK08227 139 YGMPVMA-VTAVGKDMVRDARYFSLATRIAAEMGAQIIKTYY--------------V-E---EGFERITAGC----P-VP 194 (264)
T ss_pred hCCcEEE-EecCCCCcCchHHHHHHHHHHHHHHcCCEEecCC--------------C-H---HHHHHHHHcC----C-Cc
Confidence 9999988 3321 1 1 5556799999996543 2 1 1223333322 2 57
Q ss_pred EEEccCCCCCHHHHHHHH
Q 004491 695 VLCHGGPISSPSEAEFIL 712 (749)
Q Consensus 695 ~l~hGGPi~~p~d~~~~l 712 (749)
|+|-|||=.+.+|+-.+.
T Consensus 195 VviaGG~k~~~~~~L~~v 212 (264)
T PRK08227 195 IVIAGGKKLPERDALEMC 212 (264)
T ss_pred EEEeCCCCCCHHHHHHHH
Confidence 889999987766665554
No 498
>cd08612 GDPD_GDE4 Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester phosphodiesterase GDE4 and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in mammalian GDE4 (also known as glycerophosphodiester phosphodiesterase domain-containing protein 1 (GDPD1)) and similar proteins. Mammalian GDE4 is a transmembrane protein whose cellular function has not yet been elucidated. It is expressed widely, including in placenta, liver, kidney, pancreas, spleen, thymus, ovary, small intestine and peripheral blood leukocytes. It is also expressed in the growth cones in neuroblastoma Neuro2a cells, which suggests GDE4 may play some distinct role from other members of the GDE family.
Probab=57.15 E-value=13 Score=40.20 Aligned_cols=37 Identities=22% Similarity=0.334 Sum_probs=34.1
Q ss_pred HHHHHHHHcCCcccccccC-HHHHHHHHhccCcEEEec
Q 004491 619 EMIDKAHKMGLLTTPYAFN-EGEAVKMAKAGADIIVAH 655 (749)
Q Consensus 619 emi~~A~~~gl~T~~yvf~-~eqa~~Ma~AGaDiiv~h 655 (749)
++++.||+.|+...+|..| ++++++|.+.|+|-|+..
T Consensus 252 ~~v~~~~~~G~~v~vWTVNd~~~~~~l~~~GVdgIiTD 289 (300)
T cd08612 252 SLFRHLQKRGIQVYGWVLNDEEEFERAFELGADGVMTD 289 (300)
T ss_pred HHHHHHHHCCCEEEEeecCCHHHHHHHHhcCCCEEEeC
Confidence 7899999999999999887 799999999999999864
No 499
>PRK05198 2-dehydro-3-deoxyphosphooctonate aldolase; Provisional
Probab=57.08 E-value=96 Score=33.86 Aligned_cols=90 Identities=14% Similarity=0.192 Sum_probs=64.9
Q ss_pred CceEEeeccCCCCCCHHHHHHHHHHcCccceecCCcccccchhhhhhhh-----hcCCchHHHHHHHHHHH-HcCCcccc
Q 004491 560 VPVLAGVCGTDPFRRVDYFLKQLESIGFFGVQNFPTVGLFDGNFRQNLE-----ETGMGYGLEVEMIDKAH-KMGLLTTP 633 (749)
Q Consensus 560 tPViaGv~atDP~~~~~~~l~~lk~~Gf~GV~NfPTvgliDG~fR~~LE-----e~G~gy~~EVemi~~A~-~~gl~T~~ 633 (749)
.-+|||=|+-.-.-.+.+--+.||+.|-.= +. =+++.|.|.++-. =.|+|-+.=++++++++ +.||.++-
T Consensus 11 ~~~iAGPC~vEs~e~~~~~A~~lk~~~~~~--~~--~~~fK~sf~KapRTSp~sFqG~G~eeGL~~L~~vk~~~GlpvvT 86 (264)
T PRK05198 11 FFLIAGPCVIESRDLALRIAEHLKEITDKL--GI--PYVFKASFDKANRSSIHSFRGPGLEEGLKILQEVKETFGVPVLT 86 (264)
T ss_pred eEEEecCCcccCHHHHHHHHHHHHHHHHhc--CC--CeEEeccccCCCCCCCCCCCCCChHHHHHHHHHHHHHHCCceEE
Confidence 348999999998877888888888855210 00 1233444443211 24677777788888876 57999999
Q ss_pred cccCHHHHHHHHhccCcEEEe
Q 004491 634 YAFNEGEAVKMAKAGADIIVA 654 (749)
Q Consensus 634 yvf~~eqa~~Ma~AGaDiiv~ 654 (749)
=|.+++|+...++. +|||=+
T Consensus 87 eV~~~~~~~~v~~~-~DilQI 106 (264)
T PRK05198 87 DVHEPEQAAPVAEV-VDVLQI 106 (264)
T ss_pred EeCCHHHHHHHHhh-CcEEEE
Confidence 99999999999999 999865
No 500
>cd08575 GDPD_GDE4_like Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester phosphodiesterase GDE4-like proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in mammalian GDE4 (also known as glycerophosphodiester phosphodiesterase domain-containing protein 1 (GDPD1)) and similar proteins. Mammalian GDE4 is a transmembrane protein whose cellular function is not elucidated. It is expressed widely, including in placenta, liver, kidney, pancreas, spleen, thymus, ovary, small intestine and peripheral blood leukocytes. It is also expressed in the growth cones in neuroblastoma Neuro2a cells, which suggests mammalian GDE4 may play some distinct role from other members of mammalian GDEs family. Also included in this subfamily are uncharacterized mammalian glycerophosphodiester phosphodiesterase domain-containing protein 3 (GDPD3) and similar proteins which display very high sequence homology to mammalian GDE4.
Probab=57.03 E-value=13 Score=39.40 Aligned_cols=37 Identities=22% Similarity=0.346 Sum_probs=34.2
Q ss_pred HHHHHHHHcCCcccccccC-HHHHHHHHhccCcEEEec
Q 004491 619 EMIDKAHKMGLLTTPYAFN-EGEAVKMAKAGADIIVAH 655 (749)
Q Consensus 619 emi~~A~~~gl~T~~yvf~-~eqa~~Ma~AGaDiiv~h 655 (749)
++++.+|+.|+...+|..| ++++++|.+.|+|-|+..
T Consensus 222 ~~v~~~~~~G~~v~vWTVNd~~~~~~l~~~GVdgIiTD 259 (264)
T cd08575 222 NLFDHLRKRGIQVYLWVLNDEEDFEEAFDLGADGVMTD 259 (264)
T ss_pred HHHHHHHhcCCcEEEEEECCHHHHHHHHhcCCCEEEeC
Confidence 6899999999999999999 799999999999998854
Done!