Query 004491
Match_columns 749
No_of_seqs 238 out of 416
Neff 4.4
Searched_HMMs 29240
Date Tue Mar 26 18:40:32 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/004491.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_1797-1801//hhsearch_pdb/004491hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2p10_A MLL9387 protein; putati 1.0 1 1 780.3 27.6 275 475-749 10-284 (286)
2 3tsm_A IGPS, indole-3-glycerol 1.0 1 1 61.4 16.3 182 504-740 83-266 (272)
3 3igs_A N-acetylmannosamine-6-p 1.0 1 1 60.6 17.2 170 503-729 39-215 (232)
4 3q58_A N-acetylmannosamine-6-p 1.0 1 1 59.7 17.9 180 503-745 39-225 (229)
5 2ekc_A AQ_1548, tryptophan syn 1.0 1 1 59.5 16.4 218 480-745 6-258 (262)
6 1xm3_A Thiazole biosynthesis p 1.0 1 1 56.5 14.9 206 492-744 12-228 (264)
7 3qja_A IGPS, indole-3-glycerol 1.0 1 1 55.9 14.3 185 503-745 75-260 (272)
8 2zbt_A Pyridoxal biosynthesis 1.0 1 1 55.4 12.0 194 492-729 21-243 (297)
9 2z6i_A Trans-2-enoyl-ACP reduc 1.0 1 1 55.1 16.4 37 480-518 152-189 (332)
10 2gjl_A Hypothetical protein PA 1.0 1 1 55.1 13.4 100 619-731 109-208 (328)
No 1
>2p10_A MLL9387 protein; putative phosphonopyruvate hydrolase, structural genomics, J center for structural genomics, JCSG; HET: MSE; 2.15A {Mesorhizobium loti} SCOP: c.1.12.9
Probab=1.00 E-value=1 Score=780.34 Aligned_cols=275 Identities=60% Similarity=0.980 Sum_probs=272.2
Q ss_pred CCCHHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHC
Q ss_conf 34489999999987642998699302631215666635973999842521113488631136555670289999641116
Q 004491 475 LQRTQAILSKLKYQIDKGLPIIGAGAGTGISAKFEEAGGVDLIVLYNSGRFRMAGRGSLAGLLPFADANAVVLEMANEVL 554 (749)
Q Consensus 475 ~~~r~~il~~l~~~i~~~~piig~gaGtGlsAk~ae~gGaDlii~ynsGrfR~~G~~SlagllpygdaN~iv~e~~~eil 554 (749)
.++|+|||++||+||++|+||||+|||||||||++|+||+|||++||||||||+||+||+|||||+|||+||+||++|||
T Consensus 10 ~~~r~~il~~l~~~i~~~~~iig~gaGtGlsAk~~e~gGaDlii~ynsGrfR~~G~~slag~lpygnaN~iv~e~~~evl 89 (286)
T 2p10_A 10 RPTRSELVDRFQKKIRAGEPIIGGGAGTGLSAKSEEAGDIDLIVIYNSGRYRMAGRGSLAGLLAYGNANQIVVDMAREVL 89 (286)
T ss_dssp CCCHHHHHHHHHHHHHTTCCEEEEEESSHHHHHHHHHTTCSEEEECHHHHHHHTTCCGGGGGBTEEEHHHHHHHHHHHHG
T ss_pred CCCHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHCCCCEEEEECCCHHHHCCCCCHHHHCCCCCHHHHHHHHHHHHH
T ss_conf 35999999999999866996599730634424888867987998714520211476334231024677799999998662
Q ss_pred CCCCCCCEEEEECCCCCCCCHHHHHHHHHHCCCCCEECCCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCC
Q ss_conf 88899965884025899877899999999819540231774321332666654422995479989999999839843321
Q 004491 555 PVVKEVPVLAGVCGTDPFRRVDYFLKQLESIGFFGVQNFPTVGLFDGNFRQNLEETGMGYGLEVEMIDKAHKMGLLTTPY 634 (749)
Q Consensus 555 p~v~~tPViaGv~atDP~~~~~~~l~~lk~~Gf~GV~NfPTvgliDG~fR~~LEe~G~gy~~EVemi~~A~~~gl~T~~y 634 (749)
|+|+++||+||+|++|||++|++||++||++||+|||||||||+|||+||++|||+||+|++|||||++||++||+|++|
T Consensus 90 p~v~~iPV~Agv~~~DP~~~~g~~Le~lk~~Gf~Gv~N~ptvglidG~fr~~LEE~gm~~~~eve~I~~A~~~gL~Ti~~ 169 (286)
T 2p10_A 90 PVVRHTPVLAGVNGTDPFMVMSTFLRELKEIGFAGVQNFPTVGLIDGLFRQNLEETGMSYAQEVEMIAEAHKLDLLTTPY 169 (286)
T ss_dssp GGCSSSCEEEEECTTCTTCCHHHHHHHHHHHTCCEEEECSCGGGCCHHHHHHHHHTTCCHHHHHHHHHHHHHTTCEECCE
T ss_pred CCCCCCCEEEEECCCCCCCCHHHHHHHHHHHCCCEEEECCCCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHCCCEEEEE
T ss_conf 22779877988778488767889999999819806878887344431566567663988899999999999889948996
Q ss_pred CCCHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHH
Q ss_conf 12989999999616859996257776555565442399999999999999999749991999805899998899999850
Q 004491 635 AFNEGEAVKMAKAGADIIVAHMGLTTSGSIGAKTALSLDESVDRVQAIADAAHRINPDAIVLCHGGPISSPSEAEFILKR 714 (749)
Q Consensus 635 vf~~eea~~Ma~AGaDiiv~H~GlT~gG~~Ga~~~~sl~~~~~~~~~i~~aa~~~~pdvi~l~hGGPi~~p~d~~~~l~~ 714 (749)
|||++||++|++||+|+||+|+|||+||.||+++++|+++|++++++|+++++++|||+++|||||||++|+|++|++++
T Consensus 170 v~~~eeA~amA~agpDiI~~h~glT~gglIG~~~avs~~~~~e~i~~i~~a~~~vnpdvivLc~gGpIstpeDv~~~l~~ 249 (286)
T 2p10_A 170 VFSPEDAVAMAKAGADILVCHMGLTTGGAIGARSGKSMDDCVSLINECIEAARTIRDDIIILSHGGPIANPEDARFILDS 249 (286)
T ss_dssp ECSHHHHHHHHHHTCSEEEEECSCC---------CCCHHHHHHHHHHHHHHHHHHCSCCEEEEESTTCCSHHHHHHHHHH
T ss_pred CCCHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHC
T ss_conf 39999999999809999998899877775567875467776999999999999859995799448898999999999962
Q ss_pred CCCCCEEECCCCCCCCHHHHHHHHHHHHHCCCCCC
Q ss_conf 89853776074444453879999999861013469
Q 004491 715 TKGVHGFYGASSMERLPVEQAITSTMRQYKSISIK 749 (749)
Q Consensus 715 ~~~~~Gf~g~Ss~ERlP~E~ai~~~~~~FK~~~~~ 749 (749)
|+++|||+|+||+||+|+|++|++++++||+++++
T Consensus 250 t~G~~G~~gASsier~p~e~ai~~~~~~fk~~~~~ 284 (286)
T 2p10_A 250 CQGCHGFYGASSMERLPAEEAIRSQTLAFKAIRRQ 284 (286)
T ss_dssp CTTCCEEEESHHHHHHHHHHHHHHHHHHHHTCCCC
T ss_pred CCCCCEEEEEHHHHCCCHHHHHHHHHHHHHHCCCC
T ss_conf 78865797602331187999999999999744568
No 2
>3tsm_A IGPS, indole-3-glycerol phosphate synthase; structural genomics, ssgcid, seattle structural GE center for infectious disease, lyase; 2.15A {Brucella melitensis} SCOP: c.1.2.0
Probab=1.00 E-value=1 Score=61.41 Aligned_cols=182 Identities=18% Similarity=0.169 Sum_probs=123.2
Q ss_pred HHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCHHHHHHHHH
Q ss_conf 21566663597399984252111348863113655567028999964111688899965884025899877899999999
Q 004491 504 ISAKFEEAGGVDLIVLYNSGRFRMAGRGSLAGLLPFADANAVVLEMANEVLPVVKEVPVLAGVCGTDPFRRVDYFLKQLE 583 (749)
Q Consensus 504 lsAk~ae~gGaDlii~ynsGrfR~~G~~SlagllpygdaN~iv~e~~~eilp~v~~tPViaGv~atDP~~~~~~~l~~lk 583 (749)
-.|+..+.+||+.|-++.-..|-. .+.+... ..++ .+ +.||+..=.-.||+ -+.+.+
T Consensus 83 ~~A~~y~~~GA~~IsVltd~~~f~-------------Gs~~~L~-~ir~---~v-~lPVl~Kdfi~d~~-----qi~ea~ 139 (272)
T 3tsm_A 83 ALAKAYEEGGAACLSVLTDTPSFQ-------------GAPEFLT-AARQ---AC-SLPALRKDFLFDPY-----QVYEAR 139 (272)
T ss_dssp HHHHHHHHTTCSEEEEECCSTTTC-------------CCHHHHH-HHHH---TS-SSCEEEESCCCSTH-----HHHHHH
T ss_pred HHHHHHHHCCCCEEEEECCCCCCC-------------CCHHHHH-HHHH---HC-CCCEEECCCCCCHH-----HHHHHH
T ss_conf 999999987998899932611127-------------8999999-9998---55-99989798568999-----999999
Q ss_pred HCCCCCEECCCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHCCCCEEEECC-CCCCCC
Q ss_conf 8195402317743213326666544229954799899999998398433211298999999961685999625-777655
Q 004491 584 SIGFFGVQNFPTVGLFDGNFRQNLEETGMGYGLEVEMIDKAHKMGLLTTPYAFNEGEAVKMAKAGADIIVAHM-GLTTSG 662 (749)
Q Consensus 584 ~~Gf~GV~NfPTvgliDG~fR~~LEe~G~gy~~EVemi~~A~~~gl~T~~yvf~~eea~~Ma~AGaDiiv~H~-GlT~gG 662 (749)
..|-.+|.=.-+. | ..+.=-+++..|++.||-.+.-|.|++|+++..++|+|+|-.+. .+++
T Consensus 140 ~~GAD~VlLi~a~----------L-----~~~~l~~l~~~a~~lGl~~lvevh~~eEl~~A~~~ga~iIGinnr~l~t-- 202 (272)
T 3tsm_A 140 SWGADCILIIMAS----------V-----DDDLAKELEDTAFALGMDALIEVHDEAEMERALKLSSRLLGVNNRNLRS-- 202 (272)
T ss_dssp HTTCSEEEEETTT----------S-----CHHHHHHHHHHHHHTTCEEEEEECSHHHHHHHTTSCCSEEEEECBCTTT--
T ss_pred HCCCCEEEECCCC----------C-----CHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHCCCCEEEECCCCCCC--
T ss_conf 8599999976201----------6-----8899999999999769927999599999999996699999987888766--
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHCCCCCEEECCCCCCCCH-HHHHHHHHH
Q ss_conf 556544239999999999999999974999199980589999889999985089853776074444453-879999999
Q 004491 663 SIGAKTALSLDESVDRVQAIADAAHRINPDAIVLCHGGPISSPSEAEFILKRTKGVHGFYGASSMERLP-VEQAITSTM 740 (749)
Q Consensus 663 ~~Ga~~~~sl~~~~~~~~~i~~aa~~~~pdvi~l~hGGPi~~p~d~~~~l~~~~~~~Gf~g~Ss~ERlP-~E~ai~~~~ 740 (749)
. ..+++...++ +..+.+++++++-| -|.+|+|++.+. . .+++||.-||++=|-+ .+.++.+..
T Consensus 203 ---~--~~dl~~~~~L-------~~~ip~~~~vIaes-GI~t~edv~~l~-~-~Ga~gvLVG~almr~~d~~~~~~~l~ 266 (272)
T 3tsm_A 203 ---F--EVNLAVSERL-------AKMAPSDRLLVGES-GIFTHEDCLRLE-K-SGIGTFLIGESLMRQHDVAAATRALL 266 (272)
T ss_dssp ---C--CBCTHHHHHH-------HHHSCTTSEEEEES-SCCSHHHHHHHH-T-TTCCEEEECHHHHTSSCHHHHHHHHH
T ss_pred ---C--CCCHHHHHHH-------HHHCCCCCCEEEEC-CCCCHHHHHHHH-H-CCCCEEEECHHHCCCCCHHHHHHHHH
T ss_conf ---7--7786889999-------98577788289977-999999999999-8-69999997289808867999999997
No 3
>3igs_A N-acetylmannosamine-6-phosphate 2-epimerase 2; energy metabolism, sugars, csgid, carbohydrate metabolism, isomerase; HET: MSE 16G; 1.50A {Salmonella enterica subsp} SCOP: c.1.2.0
Probab=1.00 E-value=1 Score=60.58 Aligned_cols=170 Identities=23% Similarity=0.250 Sum_probs=113.7
Q ss_pred CHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCEEEEECCCC-----CCCCH-H
Q ss_conf 12156666359739998425211134886311365556702899996411168889996588402589-----98778-9
Q 004491 503 GISAKFEEAGGVDLIVLYNSGRFRMAGRGSLAGLLPFADANAVVLEMANEVLPVVKEVPVLAGVCGTD-----PFRRV-D 576 (749)
Q Consensus 503 GlsAk~ae~gGaDlii~ynsGrfR~~G~~SlagllpygdaN~iv~e~~~eilp~v~~tPViaGv~atD-----P~~~~-~ 576 (749)
.--|+..+.||+.-|.+ + + .+.-++|--.+ +.|| .|++-.| -|..- .
T Consensus 39 ~~~A~a~~~~Ga~~i~~-~--------------------~----~~~i~~ir~~v-~~Pv-ig~~k~d~~~~~~~I~~~~ 91 (232)
T 3igs_A 39 AAMALAAEQAGAVAVRI-E--------------------G----IDNLRMTRSLV-SVPI-IGIIKRDLDESPVRITPFL 91 (232)
T ss_dssp HHHHHHHHHTTCSEEEE-E--------------------S----HHHHHHHHTTC-CSCE-EEECBCCCSSCCCCBSCSH
T ss_pred HHHHHHHHHCCCEEEEE-C--------------------C----HHHHHHHHHHC-CCCE-EEEEEECCCCCCEEECCCH
T ss_conf 99999999879919997-9--------------------9----99999999845-9988-9997204788626847439
Q ss_pred HHHHHHHHCCCCCEECCCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHCCCCEEEEC-
Q ss_conf 9999999819540231774321332666654422995479989999999839843321129899999996168599962-
Q 004491 577 YFLKQLESIGFFGVQNFPTVGLFDGNFRQNLEETGMGYGLEVEMIDKAHKMGLLTTPYAFNEGEAVKMAKAGADIIVAH- 655 (749)
Q Consensus 577 ~~l~~lk~~Gf~GV~NfPTvgliDG~fR~~LEe~G~gy~~EVemi~~A~~~gl~T~~yvf~~eea~~Ma~AGaDiiv~H- 655 (749)
..++++++.|...|. +|...+.+. +.=-++++.+++.|+..++-+.+.++++++.++|+|+|..+
T Consensus 92 ~~i~~~~~~Gad~V~-------l~~~~~~~p-------~~l~~~i~~~~~~g~~v~~~v~t~eea~~a~~~Gad~Ig~~~ 157 (232)
T 3igs_A 92 DDVDALAQAGAAIIA-------VDGTARQRP-------VAVEALLARIHHHHLLTMADCSSVDDGLACQRLGADIIGTTM 157 (232)
T ss_dssp HHHHHHHHHTCSEEE-------EECCSSCCS-------SCHHHHHHHHHHTTCEEEEECCSHHHHHHHHHTTCSEEECTT
T ss_pred HHHHHHHHCCCCEEE-------ECCCCCCCH-------HHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHCCCCEEEECC
T ss_conf 999999986999999-------996555897-------889999999987799999967989999999967999999748
Q ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHCCCCCEEECCCCCCC
Q ss_conf 57776555565442399999999999999999749991999805899998899999850898537760744444
Q 004491 656 MGLTTSGSIGAKTALSLDESVDRVQAIADAAHRINPDAIVLCHGGPISSPSEAEFILKRTKGVHGFYGASSMER 729 (749)
Q Consensus 656 ~GlT~gG~~Ga~~~~sl~~~~~~~~~i~~aa~~~~pdvi~l~hGGPi~~p~d~~~~l~~~~~~~Gf~g~Ss~ER 729 (749)
.|+|.++.. ...++ +.+.++.+. ++.+++-| -|.+|+|+..+++. +++|+.-||++-|
T Consensus 158 ~g~t~~~~~---~~~~~----~~i~~l~~~------~ipvIA~G-GI~t~~d~~~~~~~--GadgV~VGsal~~ 215 (232)
T 3igs_A 158 SGYTTPDTP---EEPDL----PLVKALHDA------GCRVIAEG-RYNSPALAAEAIRY--GAWAVTVGSAITR 215 (232)
T ss_dssp TTSSSSSCC---SSCCH----HHHHHHHHT------TCCEEEES-CCCSHHHHHHHHHT--TCSEEEECHHHHC
T ss_pred CCCCCCCCC---CCCCH----HHHHHHHHC------CCCEEEEC-CCCCHHHHHHHHHC--CCCEEEEEHHHCC
T ss_conf 268787778---88889----999999966------99699987-88999999999985--9999997168669
No 4
>3q58_A N-acetylmannosamine-6-phosphate 2-epimerase; TIM beta/alpha barrel, ribulose-phosphate binding barrel, carbohydrate metabolic process; HET: BTB; 1.80A {Salmonella enterica subsp}
Probab=1.00 E-value=1 Score=59.67 Aligned_cols=180 Identities=17% Similarity=0.204 Sum_probs=118.0
Q ss_pred CHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCEEEEECCCC-----CCCCH-H
Q ss_conf 12156666359739998425211134886311365556702899996411168889996588402589-----98778-9
Q 004491 503 GISAKFEEAGGVDLIVLYNSGRFRMAGRGSLAGLLPFADANAVVLEMANEVLPVVKEVPVLAGVCGTD-----PFRRV-D 576 (749)
Q Consensus 503 GlsAk~ae~gGaDlii~ynsGrfR~~G~~SlagllpygdaN~iv~e~~~eilp~v~~tPViaGv~atD-----P~~~~-~ 576 (749)
.--|+..+.||+.-|-+ + + .+.-++|--.+ +.|||+ ++-.| .|..- .
T Consensus 39 ~~~A~a~~~~Ga~~i~~-----------~----------~----~~~i~~ir~~v-~~Pvig-~~k~~~~~~~~~I~~~~ 91 (229)
T 3q58_A 39 AAMAQAAASAGAVAVRI-----------E----------G----IENLRTVRPHL-SVPIIG-IIKRDLTGSPVRITPYL 91 (229)
T ss_dssp HHHHHHHHHTTCSEEEE-----------E----------S----HHHHHHHGGGC-CSCEEE-ECBCCCSSCCCCBSCSH
T ss_pred HHHHHHHHHCCCCEEEE-----------C----------C----HHHHHHHHHHC-CCCEEE-EEEECCCCCCEEECCCH
T ss_conf 99999999879819997-----------9----------9----99999999854-998899-98450788746857329
Q ss_pred HHHHHHHHCCCCCEECCCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHCCCCEEEEC-
Q ss_conf 9999999819540231774321332666654422995479989999999839843321129899999996168599962-
Q 004491 577 YFLKQLESIGFFGVQNFPTVGLFDGNFRQNLEETGMGYGLEVEMIDKAHKMGLLTTPYAFNEGEAVKMAKAGADIIVAH- 655 (749)
Q Consensus 577 ~~l~~lk~~Gf~GV~NfPTvgliDG~fR~~LEe~G~gy~~EVemi~~A~~~gl~T~~yvf~~eea~~Ma~AGaDiiv~H- 655 (749)
..++++++.|...|. +|...+.+. +.=-++++.+++.|+..++-|.+.++++++.++|+|+|..+
T Consensus 92 ~~i~~~~~aGad~I~-------l~~~~~~~p-------~~l~~~i~~~~~~g~~v~~~v~t~eea~~a~~~Gad~Ig~~~ 157 (229)
T 3q58_A 92 QDVDALAQAGADIIA-------FDASFRSRP-------VDIDSLLTRIRLHGLLAMADCSTVNEGISCHQKGIEFIGTTL 157 (229)
T ss_dssp HHHHHHHHHTCSEEE-------EECCSSCCS-------SCHHHHHHHHHHTTCEEEEECSSHHHHHHHHHTTCSEEECTT
T ss_pred HHHHHHHHCCCCEEE-------ECCCCCCCH-------HHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHCCCCEEEECC
T ss_conf 999999985989999-------885456986-------779999999987799999966989999999957999999668
Q ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHCCCCCEEECCCCCCCCHHHHH
Q ss_conf 57776555565442399999999999999999749991999805899998899999850898537760744444538799
Q 004491 656 MGLTTSGSIGAKTALSLDESVDRVQAIADAAHRINPDAIVLCHGGPISSPSEAEFILKRTKGVHGFYGASSMERLPVEQA 735 (749)
Q Consensus 656 ~GlT~gG~~Ga~~~~sl~~~~~~~~~i~~aa~~~~pdvi~l~hGGPi~~p~d~~~~l~~~~~~~Gf~g~Ss~ERlP~E~a 735 (749)
.|+|.++.. ...++ +.+.++.+ . ++.+++-| -|.+|+|+..+++. +++|+.-||++-| |
T Consensus 158 ~g~t~~~~~---~~~~~----~li~~l~~----~--~ipvIA~G-GI~t~~d~~~~~~~--GadgV~VGsai~~-p---- 216 (229)
T 3q58_A 158 SGYTGPITP---VEPDL----AMVTQLSH----A--GCRVIAEG-RYNTPALAANAIEH--GAWAVTVGSAITR-I---- 216 (229)
T ss_dssp TTSSSSCCC---SSCCH----HHHHHHHT----T--TCCEEEES-SCCSHHHHHHHHHT--TCSEEEECHHHHC-H----
T ss_pred CCCCCCCCC---CCCCH----HHHHHHHH----C--CCCEEEEC-CCCCHHHHHHHHHC--CCCEEEECHHHCC-H----
T ss_conf 468888847---88889----99999997----6--99789987-87999999999986--9999997168669-5----
Q ss_pred HHHHHHHHCC
Q ss_conf 9999986101
Q 004491 736 ITSTMRQYKS 745 (749)
Q Consensus 736 i~~~~~~FK~ 745 (749)
.+.+++|..
T Consensus 217 -~~~~~~f~~ 225 (229)
T 3q58_A 217 -EHICQWFSH 225 (229)
T ss_dssp -HHHHHHHHH
T ss_pred -HHHHHHHHH
T ss_conf -999999999
No 5
>2ekc_A AQ_1548, tryptophan synthase alpha chain; structural genomics, lyase, NPPSFA, national project on PROT structural and functional analyses; 2.00A {Aquifex aeolicus}
Probab=1.00 E-value=1 Score=59.51 Aligned_cols=218 Identities=18% Similarity=0.242 Sum_probs=131.0
Q ss_pred HHHHHHHHHHHCCCCEEE-ECCCCCH------HHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCC----CH-----
Q ss_conf 999999987642998699-3026312------1566663597399984252111348863113655567----02-----
Q 004491 480 AILSKLKYQIDKGLPIIG-AGAGTGI------SAKFEEAGGVDLIVLYNSGRFRMAGRGSLAGLLPFAD----AN----- 543 (749)
Q Consensus 480 ~il~~l~~~i~~~~piig-~gaGtGl------sAk~ae~gGaDlii~ynsGrfR~~G~~Slagllpygd----aN----- 543 (749)
+..++|+++ +++.+|+ .-+|..- .++..+++|+|.|-+ | .||.| --
T Consensus 6 ~~f~~~~~~--~~~~~i~~i~~g~p~~~~~~~~~~~l~~~G~D~IEl---------G-------~P~sdP~adgp~i~~a 67 (262)
T 2ekc_A 6 DKFTELKEK--REKALVSYLMVGYPDYETSLKAFKEVLKNGTDILEI---------G-------FPFSDPVADGPTIQVA 67 (262)
T ss_dssp HHHHHHHHH--TBCEEEEEEETTSSCHHHHHHHHHHHHHTTCSEEEE---------E-------CCCSCCTTSCHHHHHH
T ss_pred HHHHHHHHC--CCCEEEEEECCCCCCHHHHHHHHHHHHHCCCCEEEE---------C-------CCCCCCCCCCHHHHHH
T ss_conf 999998863--895499995288998689999999999769999998---------7-------9888866563999999
Q ss_pred -----------HHHHHHHHHHCCCCCCCCEEEEECCCCCCC--CHHHHHHHHHHCCCCCEECCCCCCCCCHHHHHHHHHC
Q ss_conf -----------899996411168889996588402589987--7899999999819540231774321332666654422
Q 004491 544 -----------AVVLEMANEVLPVVKEVPVLAGVCGTDPFR--RVDYFLKQLESIGFFGVQNFPTVGLFDGNFRQNLEET 610 (749)
Q Consensus 544 -----------~iv~e~~~eilp~v~~tPViaGv~atDP~~--~~~~~l~~lk~~Gf~GV~NfPTvgliDG~fR~~LEe~ 610 (749)
+.++++.+++-..+.++|++. ..-++|.. ..+.|++.+++.|+.||.- |
T Consensus 68 ~~~al~~G~~~~~~~~~v~~ir~~~~~~Pi~~-m~y~n~v~~~g~~~f~~~~~~aG~dgvii-~---------------- 129 (262)
T 2ekc_A 68 HEVALKNGIRFEDVLELSETLRKEFPDIPFLL-MTYYNPIFRIGLEKFCRLSREKGIDGFIV-P---------------- 129 (262)
T ss_dssp HHHHHHTTCCHHHHHHHHHHHHHHCTTSCEEE-ECCHHHHHHHCHHHHHHHHHHTTCCEEEC-T----------------
T ss_pred HHHHHHCCCCHHHHHHHHHHHHHHCCCCCEEE-EECCCHHHHHHHHHHHHHHHHCCCCEEEE-C----------------
T ss_conf 99999869979999999999984268999899-94686898861999999999759988998-7----------------
Q ss_pred CCCHHHHHHHHHHHHHCCCCCCCCC---CCHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 9954799899999998398433211---2989999999616859996257776555565442399999999999999999
Q 004491 611 GMGYGLEVEMIDKAHKMGLLTTPYA---FNEGEAVKMAKAGADIIVAHMGLTTSGSIGAKTALSLDESVDRVQAIADAAH 687 (749)
Q Consensus 611 G~gy~~EVemi~~A~~~gl~T~~yv---f~~eea~~Ma~AGaDiiv~H~GlT~gG~~Ga~~~~sl~~~~~~~~~i~~aa~ 687 (749)
.+.++.-.+.++.+++.|+-.+.++ .+.+..+..++.+.+.+ .++. .-|..|..+..+..+..+.++++.+
T Consensus 130 dl~~ee~~~~~~~~~~~gl~~i~l~~p~t~~~rl~~ia~~a~gfi-y~vs--~~g~TG~~~~~~~~~~~~~v~~vr~--- 203 (262)
T 2ekc_A 130 DLPPEEAEELKAVMKKYVLSFVPLGAPTSTRKRIKLICEAADEMT-YFVS--VTGTTGAREKLPYERIKKKVEEYRE--- 203 (262)
T ss_dssp TCCHHHHHHHHHHHHHTTCEECCEECTTCCHHHHHHHHHHCSSCE-EEES--SCC---------CHHHHHHHHHHHH---
T ss_pred CCCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHCCCCE-EEEE--CCCCCCCCCCCCCCCHHHHHHHHHH---
T ss_conf 999799999999999869928999589998999999997489978-9995--6772499887672109999999986---
Q ss_pred HHCCCEEEEECCCCCCCHHHHHHHHHHCCCCCEEECCCCCCCCHH---HHHHHHHHHHHCC
Q ss_conf 749991999805899998899999850898537760744444538---7999999986101
Q 004491 688 RINPDAIVLCHGGPISSPSEAEFILKRTKGVHGFYGASSMERLPV---EQAITSTMRQYKS 745 (749)
Q Consensus 688 ~~~pdvi~l~hGGPi~~p~d~~~~l~~~~~~~Gf~g~Ss~ERlP~---E~ai~~~~~~FK~ 745 (749)
.. ++- ++-|+-|++|+++..+. .+++|.+-||++.+.-- ...+.+.+++.|.
T Consensus 204 -~~-~~p-v~vG~GI~t~e~~~~~~---~gADgvIVGSai~~~~~~~~~~~~~~~~~~~~~ 258 (262)
T 2ekc_A 204 -LC-DKP-VVVGFGVSKKEHAREIG---SFADGVVVGSALVKLAGQKKIEDLGNLVKELKE 258 (262)
T ss_dssp -HC-CSC-EEEESSCCSHHHHHHHH---TTSSEEEECHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred -HC-CCC-EEEECCCCCHHHHHHHH---CCCCEEEECHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf -45-997-79967989999999987---589999999799865345169999999999999
No 6
>1xm3_A Thiazole biosynthesis protein THIG; structural genomics, protein structure initiative, PSI, NESG, northeast structural genomics consortium; 1.80A {Bacillus subtilis} SCOP: c.1.31.1 PDB: 1tyg_A
Probab=1.00 E-value=1 Score=56.50 Aligned_cols=206 Identities=13% Similarity=0.129 Sum_probs=115.6
Q ss_pred CCCEEEECCCCC---HHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCEEEEECC
Q ss_conf 998699302631---21566663597399984252111348863113655567028999964111688899965884025
Q 004491 492 GLPIIGAGAGTG---ISAKFEEAGGVDLIVLYNSGRFRMAGRGSLAGLLPFADANAVVLEMANEVLPVVKEVPVLAGVCG 568 (749)
Q Consensus 492 ~~piig~gaGtG---lsAk~ae~gGaDlii~ynsGrfR~~G~~SlagllpygdaN~iv~e~~~eilp~v~~tPViaGv~a 568 (749)
+.|++-+.+|-+ .+.+..+++|+|+|-+-= + +.|-....++-.-+.++.+ +.|++....+
T Consensus 12 ~~~~~~~t~g~p~~~~~~~~l~~~Gad~ielg~--p--------------r~~~~g~~~~~~~~~l~~~-~~~~~pn~~~ 74 (264)
T 1xm3_A 12 QSRLLLGTGKYPSFDIQKEAVAVSESDILTFAV--R--------------RMNIFEASQPNFLEQLDLS-KYTLLPNTAG 74 (264)
T ss_dssp SCCEEEECSCSSCHHHHHHHHHHHTCSEEEEET--T--------------SSTTC-------CTTCCGG-GSEEEEECTT
T ss_pred CCCCEEEECCCCCHHHHHHHHHHCCCEEEEECC--C--------------CCCCCCCCHHHHHHHHHHC-CCEECCCCCC
T ss_conf 697778855798999999999973986999855--0--------------0146788889998998736-9767687113
Q ss_pred CCCCCCHH---HHHHHHHHCCCCCEECCCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHC---CCCCCCCCC-CHHHH
Q ss_conf 89987789---999999981954023177432133266665442299547998999999983---984332112-98999
Q 004491 569 TDPFRRVD---YFLKQLESIGFFGVQNFPTVGLFDGNFRQNLEETGMGYGLEVEMIDKAHKM---GLLTTPYAF-NEGEA 641 (749)
Q Consensus 569 tDP~~~~~---~~l~~lk~~Gf~GV~NfPTvgliDG~fR~~LEe~G~gy~~EVemi~~A~~~---gl~T~~yvf-~~eea 641 (749)
+...+ +|.+.+++.|-.++...-- .-|. ...++...+.++.|++. |+..++++. +.+++
T Consensus 75 ---~~~~~~~~~f~~~a~~agg~~~i~l~i--~~d~---------~~~~~e~~~~~~~a~~~~~~g~~vi~~~~~~~~~a 140 (264)
T 1xm3_A 75 ---ASTAEEAVRIARLAKASGLCDMIKVEV--IGCS---------RSLLPDPVETLKASEQLLEEGFIVLPYTSDDVVLA 140 (264)
T ss_dssp ---CSSHHHHHHHHHHHHHTTCCSSEEECC--BCCT---------TTCCBCHHHHHHHHHHHHHTTCCEEEEECSCHHHH
T ss_pred ---CCCHHHHHHHHHHHHHCCCCCEEEEEE--CCCC---------CCCCCCHHHHHHHHHHHHCCCEEEEEECCCCHHHH
T ss_conf ---689999999999999749998699865--3777---------54430057999999998779909999818889999
Q ss_pred HHHHHCCCCEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHCCCCCEE
Q ss_conf 99996168599962577765555654423999999999999999997499919998058999988999998508985377
Q 004491 642 VKMAKAGADIIVAHMGLTTSGSIGAKTALSLDESVDRVQAIADAAHRINPDAIVLCHGGPISSPSEAEFILKRTKGVHGF 721 (749)
Q Consensus 642 ~~Ma~AGaDiiv~H~GlT~gG~~Ga~~~~sl~~~~~~~~~i~~aa~~~~pdvi~l~hGGPi~~p~d~~~~l~~~~~~~Gf 721 (749)
++..++|+|.|+...+.| |...+.. + .+.++.+.+ . .++.+++ +|-|.+|+|+..+++ .+++|+
T Consensus 141 ~~~~~~gad~v~~~~~~~-Gt~~~~~---~----~~~l~~i~~----~-~~iPviv-~gGI~t~eda~~~~~--~GAdgV 204 (264)
T 1xm3_A 141 RKLEELGVHAIMPGASPI-GSGQGIL---N----PLNLSFIIE----Q-AKVPVIV-DAGIGSPKDAAYAME--LGADGV 204 (264)
T ss_dssp HHHHHHTCSCBEECSSST-TCCCCCS---C----HHHHHHHHH----H-CSSCBEE-ESCCCSHHHHHHHHH--TTCSEE
T ss_pred HHHHHHCCCEEEECCCCC-CCCCCCC---C----HHHHHHHHH----C-CCCCEEE-EECCCCHHHHHHHHH--CCCCEE
T ss_conf 999980999999788646-8898989---9----999999996----5-8998899-958999999999998--499999
Q ss_pred ECCCCCCCCH-HHHHHHHHHHHHC
Q ss_conf 6074444453-8799999998610
Q 004491 722 YGASSMERLP-VEQAITSTMRQYK 744 (749)
Q Consensus 722 ~g~Ss~ERlP-~E~ai~~~~~~FK 744 (749)
+-+|.+.+.+ ...++.+..+.++
T Consensus 205 iVGSAi~~a~dp~~~~~~l~~~v~ 228 (264)
T 1xm3_A 205 LLNTAVSGADDPVKMARAMKLAVE 228 (264)
T ss_dssp EESHHHHTSSSHHHHHHHHHHHHH
T ss_pred EECHHHHCCCCHHHHHHHHHHHHH
T ss_conf 982797679999999999999999
No 7
>3qja_A IGPS, indole-3-glycerol phosphate synthase; structural genomics, T structural genomics consortium, TBSGC, lyase; 1.29A {Mycobacterium tuberculosis} PDB: 3t40_A* 3t44_A* 3t55_A* 3t78_A* 4fb7_A*
Probab=1.00 E-value=1 Score=55.89 Aligned_cols=185 Identities=15% Similarity=0.150 Sum_probs=116.8
Q ss_pred CHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCHHHHHHHH
Q ss_conf 12156666359739998425211134886311365556702899996411168889996588402589987789999999
Q 004491 503 GISAKFEEAGGVDLIVLYNSGRFRMAGRGSLAGLLPFADANAVVLEMANEVLPVVKEVPVLAGVCGTDPFRRVDYFLKQL 582 (749)
Q Consensus 503 GlsAk~ae~gGaDlii~ynsGrfR~~G~~SlagllpygdaN~iv~e~~~eilp~v~~tPViaGv~atDP~~~~~~~l~~l 582 (749)
.-.|+..+++||+.|-++---.|- +.+.+.+.+. ++ .+ +.||+.. |-.++ +.-+++.
T Consensus 75 ~~~A~~y~~~GA~~isvltd~~~f-------------~Gs~~~l~~i-r~---~v-~lPvl~k----dfiid-~~qv~~A 131 (272)
T 3qja_A 75 AKLAQAYQDGGARIVSVVTEQRRF-------------QGSLDDLDAV-RA---SV-SIPVLRK----DFVVQ-PYQIHEA 131 (272)
T ss_dssp HHHHHHHHHTTCSEEEEECCGGGH-------------HHHHHHHHHH-HH---HC-SSCEEEE----SCCCS-HHHHHHH
T ss_pred HHHHHHHHHCCCCEEEEECCHHHC-------------CCCHHHHHHH-HH---HC-CCCEEEC----CCCCC-HHHHHHH
T ss_conf 999999997699989995473111-------------7989999999-97---17-9888978----61157-9999999
Q ss_pred HHCCCCCEEC-CCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHCCCCEEEECCCCCCC
Q ss_conf 9819540231-774321332666654422995479989999999839843321129899999996168599962577765
Q 004491 583 ESIGFFGVQN-FPTVGLFDGNFRQNLEETGMGYGLEVEMIDKAHKMGLLTTPYAFNEGEAVKMAKAGADIIVAHMGLTTS 661 (749)
Q Consensus 583 k~~Gf~GV~N-fPTvgliDG~fR~~LEe~G~gy~~EVemi~~A~~~gl~T~~yvf~~eea~~Ma~AGaDiiv~H~GlT~g 661 (749)
+..|..||.= -+... .+.=-+++..|++.||-.+.-|.|++|++...++|+|+|.++ +.. .
T Consensus 132 ~~~GAD~VlLi~a~l~----------------~~~l~~l~~~a~~lGl~~lvev~t~ee~~~A~~~Gad~IGv~-~r~-l 193 (272)
T 3qja_A 132 RAHGADMLLLIVAALE----------------QSVLVSMLDRTESLGMTALVEVHTEQEADRALKAGAKVIGVN-ARD-L 193 (272)
T ss_dssp HHTTCSEEEEEGGGSC----------------HHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHTCSEEEEE-SBC-T
T ss_pred HHCCCCEEEEECCCCC----------------HHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHCCCCEEEEC-CCC-C
T ss_conf 9849999999246699----------------899999999999779939998399999999997798999988-986-5
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHCCCCCEEECCCCCCCCHHHHHHHHHHH
Q ss_conf 55565442399999999999999999749991999805899998899999850898537760744444538799999998
Q 004491 662 GSIGAKTALSLDESVDRVQAIADAAHRINPDAIVLCHGGPISSPSEAEFILKRTKGVHGFYGASSMERLPVEQAITSTMR 741 (749)
Q Consensus 662 G~~Ga~~~~sl~~~~~~~~~i~~aa~~~~pdvi~l~hGGPi~~p~d~~~~l~~~~~~~Gf~g~Ss~ERlP~E~ai~~~~~ 741 (749)
.+ ...+++... ++ +..+.+++.+++ +|-|.+|+|+..+.+ .+++|++-||++=|-+ -..+.++
T Consensus 194 ~~----~~~dl~~~~----~l---~~~v~~~~pvVa-egGI~t~edv~~l~~--~GadgvlVGsal~~a~---dp~~~~~ 256 (272)
T 3qja_A 194 MT----LDVDRDCFA----RI---APGLPSSVIRIA-ESGVRGTADLLAYAG--AGADAVLVGEGLVTSG---DPRAAVA 256 (272)
T ss_dssp TT----CCBCTTHHH----HH---GGGSCTTSEEEE-ESCCCSHHHHHHHHH--TTCSEEEECHHHHTCS---CHHHHHH
T ss_pred CC----CCCCHHHHH----HH---HHHCCCCCEEEE-ECCCCCHHHHHHHHH--CCCCEEEECHHHHCCC---CHHHHHH
T ss_conf 45----666879999----99---984763677999-879999999999998--6999999708983899---9999999
Q ss_pred HHCC
Q ss_conf 6101
Q 004491 742 QYKS 745 (749)
Q Consensus 742 ~FK~ 745 (749)
+|..
T Consensus 257 ~l~~ 260 (272)
T 3qja_A 257 DLVT 260 (272)
T ss_dssp HHHT
T ss_pred HHHH
T ss_conf 9984
No 8
>2zbt_A Pyridoxal biosynthesis lyase PDXS; pyridoxine biosynthesis, structural genomics, NPPSFA; 1.65A {Thermus thermophilus} PDB: 2iss_A*
Probab=1.00 E-value=1 Score=55.38 Aligned_cols=194 Identities=20% Similarity=0.215 Sum_probs=107.4
Q ss_pred CCCEEEECCCCCHHHHHHHHCCCCEEEEECCCCC--CCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCEEEEECCC
Q ss_conf 9986993026312156666359739998425211--13488631136555670289999641116888999658840258
Q 004491 492 GLPIIGAGAGTGISAKFEEAGGVDLIVLYNSGRF--RMAGRGSLAGLLPFADANAVVLEMANEVLPVVKEVPVLAGVCGT 569 (749)
Q Consensus 492 ~~piig~gaGtGlsAk~ae~gGaDlii~ynsGrf--R~~G~~SlagllpygdaN~iv~e~~~eilp~v~~tPViaGv~at 569 (749)
..++|.... .--.|+..+.+|+|.|.+..+-.+ |.. .|.--+ +.-+.+.+ +...+ +.|++....-.
T Consensus 21 ~~~~i~~~~-~~~~a~~~~~~Ga~~i~~~e~v~~~~~~~-----~G~~~~-~~~~~i~~----i~~~~-~~Pvi~~~~~~ 88 (297)
T 2zbt_A 21 KGGVIMDVT-TPEQAVIAEEAGAVAVMALERVPADIRAQ-----GGVARM-SDPKIIKE----IMAAV-SIPVMAKVRIG 88 (297)
T ss_dssp TTEEEEEES-SHHHHHHHHHHTCSEEEECSSCHHHHHHT-----TCCCCC-CCHHHHHH----HHTTC-SSCEEEEEETT
T ss_pred HCCEEEEEC-HHHHHHHHHHCCCCEEEECCCCCHHHHHH-----CCCCCC-CCHHHHHH----HHHHC-CCCEEEEECCC
T ss_conf 189566546-69999999977982999515466677753-----377667-77999999----99844-89869775169
Q ss_pred CCCCCHHHHHHHHHHCCCCCEECCCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHC--CCCCCCCCCCHHHHHHHHHC
Q ss_conf 9987789999999981954023177432133266665442299547998999999983--98433211298999999961
Q 004491 570 DPFRRVDYFLKQLESIGFFGVQNFPTVGLFDGNFRQNLEETGMGYGLEVEMIDKAHKM--GLLTTPYAFNEGEAVKMAKA 647 (749)
Q Consensus 570 DP~~~~~~~l~~lk~~Gf~GV~NfPTvgliDG~fR~~LEe~G~gy~~EVemi~~A~~~--gl~T~~yvf~~eea~~Ma~A 647 (749)
+ ..+++.+.+.|..+| ||.|..++ .++++.+++. ++.-++=+.+++++....++
T Consensus 89 ----~-~~~~~~~~~aGad~v---------~~~~~~~~----------~~~~~~~~~~~~~i~l~~~v~~~~~~~~a~~~ 144 (297)
T 2zbt_A 89 ----H-FVEAMILEAIGVDFI---------DESEVLTP----------ADEEHHIDKWKFKVPFVCGARNLGEALRRIAE 144 (297)
T ss_dssp ----C-HHHHHHHHHTTCSEE---------EEETTSCC----------SCSSCCCCGGGCSSCEEEEESSHHHHHHHHHT
T ss_pred ----C-HHHHHHHHHCCCCEE---------EEECCCCH----------HHHHHHHHHHCCCCEEEEECCCHHHHHHHHHC
T ss_conf ----8-999999998799889---------52077885----------99999999837983699635898999999973
Q ss_pred CCCEEEECCCCCCCCCC------------------CCCCCCCHH-------HHHHHHHHHHHHHHHHCCCEEEEECCCCC
Q ss_conf 68599962577765555------------------654423999-------99999999999999749991999805899
Q 004491 648 GADIIVAHMGLTTSGSI------------------GAKTALSLD-------ESVDRVQAIADAAHRINPDAIVLCHGGPI 702 (749)
Q Consensus 648 GaDiiv~H~GlT~gG~~------------------Ga~~~~sl~-------~~~~~~~~i~~aa~~~~pdvi~l~hGGPi 702 (749)
|+|.|+.| ||...|.+ |. +..+.. ...+.++++.+ ..+-.+++.+- |-|
T Consensus 145 Gad~I~v~-G~~~~g~~~e~~~~~~~~~~~i~~~~g~-t~~~~~~~~~~~~~~~~~i~~l~~---~~~~pvi~~a~-GGI 218 (297)
T 2zbt_A 145 GAAMIRTK-GEAGTGNVVEAVRHARTMWKEIRYVQSL-REDELMAYAKEIGAPFELVKWVHD---HGRLPVVNFAA-GGI 218 (297)
T ss_dssp TCSEEEEC-CCSSSCCTHHHHHHHHHHHHHHHHHHHS-CGGGHHHHHHHHTCCHHHHHHHHH---HSSCSSCEEBC-SSC
T ss_pred CCCEEEEC-CCCCCCCHHHHHHHHHHHHHHHHHCCCC-CCCCCHHHHHCCHHHHHHHHHHHH---HCCCCCEEEEE-CCC
T ss_conf 89899986-6556752677776499999988871786-999721221014346999999997---36998179951-798
Q ss_pred CCHHHHHHHHHHCCCCCEEECCCCCCC
Q ss_conf 998899999850898537760744444
Q 004491 703 SSPSEAEFILKRTKGVHGFYGASSMER 729 (749)
Q Consensus 703 ~~p~d~~~~l~~~~~~~Gf~g~Ss~ER 729 (749)
.+++|+..+++ .+++|++-||++=+
T Consensus 219 ~~~e~i~~~~~--aGadgvvvGsai~~ 243 (297)
T 2zbt_A 219 ATPADAALMMH--LGMDGVFVGSGIFK 243 (297)
T ss_dssp CSHHHHHHHHH--TTCSEEEECGGGGG
T ss_pred CCHHHHHHHHH--CCCCEEEECHHHHC
T ss_conf 89999999998--69989998569967
No 9
>2z6i_A Trans-2-enoyl-ACP reductase II; fatty acid synthesis, antibiotics, oxidoreductase, flavoprotein; HET: FMN; 1.70A {Streptococcus pneumoniae} PDB: 2z6j_A*
Probab=1.00 E-value=1 Score=55.12 Aligned_cols=37 Identities=22% Similarity=0.370 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHCCCCEEEE-CCCCCHHHHHHHHCCCCEEE
Q ss_conf 9999999876429986993-02631215666635973999
Q 004491 480 AILSKLKYQIDKGLPIIGA-GAGTGISAKFEEAGGVDLIV 518 (749)
Q Consensus 480 ~il~~l~~~i~~~~piig~-gaGtGlsAk~ae~gGaDlii 518 (749)
+++..+++.+ +.|+|.+ |..++-.+..+-+-|+|.+.
T Consensus 152 ~ll~~i~~~~--~iPViaaGGI~~~~~~~~al~~GAdgV~ 189 (332)
T 2z6i_A 152 TLVRQVATAI--SIPVIAAGGIADGEGAAAGFMLGAEAVQ 189 (332)
T ss_dssp HHHHHHHHHC--SSCEEEESSCCSHHHHHHHHHTTCSEEE
T ss_pred HHHHHHHHHC--CCCEEEECCCCCHHHHHHHHHCCCCEEE
T ss_conf 9999999864--9979997999999999999984999899
No 10
>2gjl_A Hypothetical protein PA1024; 2-nitropropane dioxygenase, 2-nitropropane, FMN, oxidoreduct; HET: FMN; 2.00A {Pseudomonas aeruginosa PAO1} PDB: 2gjn_A*
Probab=1.00 E-value=1 Score=55.07 Aligned_cols=100 Identities=16% Similarity=0.193 Sum_probs=41.8
Q ss_pred HHHHHHHHCCCCCCCCCCCHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCEEEEEC
Q ss_conf 99999998398433211298999999961685999625777655556544239999999999999999974999199980
Q 004491 619 EMIDKAHKMGLLTTPYAFNEGEAVKMAKAGADIIVAHMGLTTSGSIGAKTALSLDESVDRVQAIADAAHRINPDAIVLCH 698 (749)
Q Consensus 619 emi~~A~~~gl~T~~yvf~~eea~~Ma~AGaDiiv~H~GlT~gG~~Ga~~~~sl~~~~~~~~~i~~aa~~~~pdvi~l~h 698 (749)
+.++..++.|+..++-|.+.++++...++|+|.|+++ |.+.||..|.....++ +.+.++.++ + ++-++.
T Consensus 109 ~~~~~l~~~gi~vi~~v~t~~~a~~~~~~GaD~i~v~-g~~~GG~~G~~~~~~~----~~l~~v~~~---~--~iPvia- 177 (328)
T 2gjl_A 109 EHIAEFRRHGVKVIHKCTAVRHALKAERLGVDAVSID-GFECAGHPGEDDIPGL----VLLPAAANR---L--RVPIIA- 177 (328)
T ss_dssp HHHHHHHHTTCEEEEEESSHHHHHHHHHTTCSEEEEE-CTTCSBCCCSSCCCHH----HHHHHHHTT---C--CSCEEE-
T ss_pred HHHHHHHHCCCCEEEECCCHHHHHHHHHCCCCEEEEE-CCCCCCCCCCCCCCHH----HHHHHHHHH---C--CCCEEE-
T ss_conf 9999999809977866799999999997399999997-9997767787535699----999999996---3--987899-
Q ss_pred CCCCCCHHHHHHHHHHCCCCCEEECCCCCCCCH
Q ss_conf 589999889999985089853776074444453
Q 004491 699 GGPISSPSEAEFILKRTKGVHGFYGASSMERLP 731 (749)
Q Consensus 699 GGPi~~p~d~~~~l~~~~~~~Gf~g~Ss~ERlP 731 (749)
.|-|.+|+|+...+.. +++|..-+|.+..-|
T Consensus 178 aGGI~~~~~v~~al~~--GAdgV~vGs~~~~~~ 208 (328)
T 2gjl_A 178 SGGFADGRGLVAALAL--GADAINMGTRFLATR 208 (328)
T ss_dssp ESSCCSHHHHHHHHHH--TCSEEEESHHHHTSS
T ss_pred ECCCCCHHHHHHHHHC--CCCEEEECHHHHCCC
T ss_conf 7998999999999983--999799878997386
Done!