BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>004493
MYKTVAYLGKEILGEVEIYPQQQGEGGEGEEKNKKVFDEIRISYFSEASERCPPLAVLHT
ITASGICFKMESKSSDNIQLHLLHSSCIRENKTAVMPLGLTEELHLVAMYSRNNEKQYPC
FWAFSVGSGLYNSCLTMLNLRCLGIVFDLDETLIVANTMRSFEDRIEALLRKISTEVDPQ
RIAGMQAEVKRYQDDKNILKQYAENDQVNENGKVIKVQSEVVPALSDSHQALVRPLIRLQ
EKNIILTRINPQIRDTSVLVRLRPAWEDLRSYLTARGRKRFEVYVCTMAERDYALEMWRL
LDPESNLINTKELLDRIVCVKSGSRKSLFNVFQDGTCHPKMALVIDDRLKVWDDKDQPRV
HVVPAFAPYYAPQAEANNAIPVLCVARNIACNVRGGFFKEFDEGLLQRIPEISYEDDVKD
IPSPPDVSNYLVSEDDAATANGIKDPLSFDGMADAEVERRLKEAIAASATISSAVANLDP
RLAPFQYTMPSSSSTTTLPTSQAAVMPLANMQFPPATSLVKPLGHVGPPEQSLQSSPARE
EGEVPESELDPDTRRRLLILQHGMDTRENAPSEAPFPARTQMQVSVPRVPSRGSWFPVEE
EMSPRQLNRAVPKEFPLNSEAMQIEKHRPPHPSFFPKIENPSTSDRPHENQRMPKEALRR
DDRLRLNHTLSDYQSFSGEEIPLSRSSSSSRDVDFESGRDVSSTETPSGVLQDIAMKCGT
KVEFRPALVASTELQFSIEVLYALWLTKF

High Scoring Gene Products

Symbol, full name Information P value
CPL1
AT4G21670
protein from Arabidopsis thaliana 2.4e-250

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  004493
        (749 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2119053 - symbol:CPL1 "C-terminal domain phosp...  2411  2.4e-250  1


>TAIR|locus:2119053 [details] [associations]
            symbol:CPL1 "C-terminal domain phosphatase-like 1"
            species:3702 "Arabidopsis thaliana" [GO:0003725 "double-stranded
            RNA binding" evidence=IEA;ISS] [GO:0005622 "intracellular"
            evidence=IEA] [GO:0005634 "nucleus" evidence=ISM;IDA] [GO:0009651
            "response to salt stress" evidence=IMP] [GO:0009738 "abscisic acid
            mediated signaling pathway" evidence=IMP] [GO:0019204 "nucleotide
            phosphatase activity" evidence=IDA] [GO:0045892 "negative
            regulation of transcription, DNA-dependent" evidence=IMP]
            [GO:0004647 "phosphoserine phosphatase activity" evidence=IDA]
            [GO:0016791 "phosphatase activity" evidence=IDA] [GO:0009611
            "response to wounding" evidence=IMP] InterPro:IPR001159
            InterPro:IPR004274 Pfam:PF00035 Pfam:PF03031 PROSITE:PS50137
            PROSITE:PS50969 SMART:SM00358 SMART:SM00577 InterPro:IPR014720
            GO:GO:0007275 GO:GO:0005634 GO:GO:0045892 EMBL:CP002687
            GenomeReviews:CT486007_GR GO:GO:0009611 GO:GO:0009738 GO:GO:0046872
            Gene3D:3.40.50.1000 InterPro:IPR023214 SUPFAM:SSF56784
            Gene3D:3.30.160.20 GO:GO:0006351 GO:GO:0004721 GO:GO:0003725
            EMBL:AL161555 EMBL:AL035527 EMBL:AY557186 EMBL:AK221944
            EMBL:AK229289 IPI:IPI00518313 PIR:T05842 RefSeq:NP_193898.3
            UniGene:At.2700 UniGene:At.32611 ProteinModelPortal:Q5YDB6
            SMR:Q5YDB6 IntAct:Q5YDB6 STRING:Q5YDB6 PaxDb:Q5YDB6 PRIDE:Q5YDB6
            EnsemblPlants:AT4G21670.1 GeneID:828254 KEGG:ath:AT4G21670
            TAIR:At4g21670 eggNOG:NOG244866 HOGENOM:HOG000078695
            InParanoid:Q5YDB6 OMA:SFDGMAD PhylomeDB:Q5YDB6
            ProtClustDB:CLSN2681612 Genevestigator:Q5YDB6 GO:GO:0019204
            GO:GO:0004647 GO:GO:0009628 Uniprot:Q5YDB6
        Length = 967

 Score = 2411 (853.8 bits), Expect = 2.4e-250, P = 2.4e-250
 Identities = 488/756 (64%), Positives = 569/756 (75%)

Query:    13 LGEVEIYPXXXXXXXXXXX------KNKKVFD----EIRISYFSEASERCPPLAVLHTIT 62
             LGE+EIYP                 K ++V +     IRIS+FS++ ERCPPLA+L TI+
Sbjct:    16 LGELEIYPSRELNQQQDDVMKQRKKKQREVMELAKMGIRISHFSQSGERCPPLAILTTIS 75

Query:    63 ASGICFKME-SKSSDNIQLHLLHSSCIRENKTAVMPLGLTEELHLVAMYSRNNEKQYPCF 121
             + G+CFK+E S S     L L +SSC+R+NKTAVM LG  EELHLVAMYS N +   PCF
Sbjct:    76 SCGLCFKLEASPSPAQESLSLFYSSCLRDNKTAVMLLG-GEELHLVAMYSENIKNDRPCF 134

Query:   122 WAFSVGSGLYNSCLTMLNLRCLGIVFDLDETLIVANTMRSFEDRIEALLRKISTEVDPQR 181
             WAFSV  G+Y+SCL MLNLRCLGIVFDLDETL+VANTMRSFED+I+   R+I+ E+DPQR
Sbjct:   135 WAFSVAPGIYDSCLVMLNLRCLGIVFDLDETLVVANTMRSFEDKIDGFQRRINNEMDPQR 194

Query:   182 IAGMQAEVKRYQDDKNILKQYAENDQVNENGKVIKVQSEVVPALSDSHQALVRPLIRLQE 241
             +A + AE+KRYQDDKN+LKQY E+DQV ENG+VIKVQSE+VPALSD+HQ LVRPLIRLQE
Sbjct:   195 LAVIVAEMKRYQDDKNLLKQYIESDQVVENGEVIKVQSEIVPALSDNHQPLVRPLIRLQE 254

Query:   242 KNIILTRINPQIRDTSVLVRLRPAWEDLRSYLTARGRKRFEVYVCTMAERDYALEMWRLL 301
             KNIILTRINP IRDTSVLVR+RP+WE+LRSYLTA+GRKRFEVYVCTMAERDYALEMWRLL
Sbjct:   255 KNIILTRINPMIRDTSVLVRMRPSWEELRSYLTAKGRKRFEVYVCTMAERDYALEMWRLL 314

Query:   302 DPESNLINTKELLDRIVCVKSGSRKSLFNVFQDGTCHPKMALVIDDRLKVWDDKDQPRVH 361
             DPE NLINT +LL RIVCVKSG +KSLFNVF DGTCHPKMALVIDDRLKVWD+KDQPRVH
Sbjct:   315 DPEGNLINTNDLLARIVCVKSGFKKSLFNVFLDGTCHPKMALVIDDRLKVWDEKDQPRVH 374

Query:   362 VVPAFAPYYAPQAEANNAIPVLCVARNIACNVRGGFFKEFDEGLLQRIPEISYEDDVKDI 421
             VVPAFAPYY+PQAEA  A PVLCVARN+AC VRGGFF++FD+ LL RI EISYE+D +DI
Sbjct:   375 VVPAFAPYYSPQAEAA-ATPVLCVARNVACGVRGGFFRDFDDSLLPRIAEISYENDAEDI 433

Query:   422 PSPPDVSNYLVSEDDAATANGIKDPLSFDGMADAEVERRLKEXXXXXXXXXXXXXNLDPR 481
             PSPPDVS+YLVSEDD +  NG KDPLSFDGMAD EVERRLKE             N+DPR
Sbjct:   434 PSPPDVSHYLVSEDDTSGLNGNKDPLSFDGMADTEVERRLKEAISASSAVLPAA-NIDPR 492

Query:   482 LA-PFQYXXXXXXXXXX---XXXXQAAVMPLANMQFP--PATSLVKPLG---HVGPPEQS 532
             +A P Q+                 Q A+ P A M FP  P     +P     H+ P E S
Sbjct:   493 IAAPVQFPMASASSVSVPVPVQVVQQAIQPSA-MAFPSIPFQQPQQPTSIAKHLVPSEPS 551

Query:   533 LQSSPAREEGEVPESELDPDTRRRLLILQHGMDTRENAPSEAPFPARTQMQVSVPRVPSR 592
             LQSSPAREEGEVPESELDPDTRRRLLILQHG DTR+ APSE  FP R  +Q     V SR
Sbjct:   552 LQSSPAREEGEVPESELDPDTRRRLLILQHGQDTRDPAPSEPSFPQRPPVQAPPSHVQSR 611

Query:   593 GSWFPVEEEMSPRQLNRAVPKEFPLNSEAMQIEKHRPPHPSFFPKIENPSTSDRP-HENQ 651
               WFPVEEEM P Q+ RAV KE+PL+SE + +EKHRP HPSFF KI+N + SDR  HEN+
Sbjct:   612 NGWFPVEEEMDPAQIRRAVSKEYPLDSEMIHMEKHRPRHPSFFSKIDNSTQSDRMLHENR 671

Query:   652 RMPKEALRRDDRLRLNHTLSDYQSFSGEEIPLXXXXXXXXDVDFESGRDVSSTETPSGVL 711
             R PKE+LRRD++LR N+ L D   F GE+           D+DF   R VS+TET + VL
Sbjct:   672 RPPKESLRRDEQLRSNNNLPDSHPFYGEDASWNQSSSRNSDLDFLPERSVSATETSADVL 731

Query:   712 QDIAMKCGTKVEFRPALVASTELQFSIEVLYALWLT 747
               IA+KCG KVE++P+LV+ST+L+FS+E     WL+
Sbjct:   732 HGIAIKCGAKVEYKPSLVSSTDLRFSVEA----WLS 763


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.318   0.134   0.395    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      749       703   0.00082  121 3  11 22  0.40    34
                                                     36  0.45    37


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  618 (66 KB)
  Total size of DFA:  359 KB (2179 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  64.09u 0.17s 64.26t   Elapsed:  00:00:03
  Total cpu time:  64.09u 0.17s 64.26t   Elapsed:  00:00:03
  Start:  Mon May 20 15:31:08 2013   End:  Mon May 20 15:31:11 2013

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