BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 004493
(749 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q5YDB6|CPL1_ARATH RNA polymerase II C-terminal domain phosphatase-like 1
OS=Arabidopsis thaliana GN=CPL1 PE=1 SV=1
Length = 967
Score = 971 bits (2509), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 500/764 (65%), Positives = 589/764 (77%), Gaps = 33/764 (4%)
Query: 7 YLGKEILGEVEIYP-----QQQGEGGEGEEKNKKVFDE-----IRISYFSEASERCPPLA 56
+ G LGE+EIYP QQQ + + +K ++ E IRIS+FS++ ERCPPLA
Sbjct: 10 FHGDGRLGELEIYPSRELNQQQDDVMKQRKKKQREVMELAKMGIRISHFSQSGERCPPLA 69
Query: 57 VLHTITASGICFKME-SKSSDNIQLHLLHSSCIRENKTAVMPLGLTEELHLVAMYSRNNE 115
+L TI++ G+CFK+E S S L L +SSC+R+NKTAVM LG EELHLVAMYS N +
Sbjct: 70 ILTTISSCGLCFKLEASPSPAQESLSLFYSSCLRDNKTAVMLLG-GEELHLVAMYSENIK 128
Query: 116 KQYPCFWAFSVGSGLYNSCLTMLNLRCLGIVFDLDETLIVANTMRSFEDRIEALLRKIST 175
PCFWAFSV G+Y+SCL MLNLRCLGIVFDLDETL+VANTMRSFED+I+ R+I+
Sbjct: 129 NDRPCFWAFSVAPGIYDSCLVMLNLRCLGIVFDLDETLVVANTMRSFEDKIDGFQRRINN 188
Query: 176 EVDPQRIAGMQAEVKRYQDDKNILKQYAENDQVNENGKVIKVQSEVVPALSDSHQALVRP 235
E+DPQR+A + AE+KRYQDDKN+LKQY E+DQV ENG+VIKVQSE+VPALSD+HQ LVRP
Sbjct: 189 EMDPQRLAVIVAEMKRYQDDKNLLKQYIESDQVVENGEVIKVQSEIVPALSDNHQPLVRP 248
Query: 236 LIRLQEKNIILTRINPQIRDTSVLVRLRPAWEDLRSYLTARGRKRFEVYVCTMAERDYAL 295
LIRLQEKNIILTRINP IRDTSVLVR+RP+WE+LRSYLTA+GRKRFEVYVCTMAERDYAL
Sbjct: 249 LIRLQEKNIILTRINPMIRDTSVLVRMRPSWEELRSYLTAKGRKRFEVYVCTMAERDYAL 308
Query: 296 EMWRLLDPESNLINTKELLDRIVCVKSGSRKSLFNVFQDGTCHPKMALVIDDRLKVWDDK 355
EMWRLLDPE NLINT +LL RIVCVKSG +KSLFNVF DGTCHPKMALVIDDRLKVWD+K
Sbjct: 309 EMWRLLDPEGNLINTNDLLARIVCVKSGFKKSLFNVFLDGTCHPKMALVIDDRLKVWDEK 368
Query: 356 DQPRVHVVPAFAPYYAPQAEANNAIPVLCVARNIACNVRGGFFKEFDEGLLQRIPEISYE 415
DQPRVHVVPAFAPYY+PQAEA A PVLCVARN+AC VRGGFF++FD+ LL RI EISYE
Sbjct: 369 DQPRVHVVPAFAPYYSPQAEA-AATPVLCVARNVACGVRGGFFRDFDDSLLPRIAEISYE 427
Query: 416 DDVKDIPSPPDVSNYLVSEDDAATANGIKDPLSFDGMADAEVERRLKEAIAASATISSAV 475
+D +DIPSPPDVS+YLVSEDD + NG KDPLSFDGMAD EVERRLKEAI+AS+ + A
Sbjct: 428 NDAEDIPSPPDVSHYLVSEDDTSGLNGNKDPLSFDGMADTEVERRLKEAISASSAVLPA- 486
Query: 476 ANLDPRL-APFQYTM---------PSSSSTTTLPTSQAAVMPLANMQFPPA-TSLVKPLG 524
AN+DPR+ AP Q+ M A P Q P TS+ K
Sbjct: 487 ANIDPRIAAPVQFPMASASSVSVPVPVQVVQQAIQPSAMAFPSIPFQQPQQPTSIAK--- 543
Query: 525 HVGPPEQSLQSSPAREEGEVPESELDPDTRRRLLILQHGMDTRENAPSEAPFPARTQMQV 584
H+ P E SLQSSPAREEGEVPESELDPDTRRRLLILQHG DTR+ APSE FP R +Q
Sbjct: 544 HLVPSEPSLQSSPAREEGEVPESELDPDTRRRLLILQHGQDTRDPAPSEPSFPQRPPVQA 603
Query: 585 SVPRVPSRGSWFPVEEEMSPRQLNRAVPKEFPLNSEAMQIEKHRPPHPSFFPKIENPSTS 644
V SR WFPVEEEM P Q+ RAV KE+PL+SE + +EKHRP HPSFF KI+N + S
Sbjct: 604 PPSHVQSRNGWFPVEEEMDPAQIRRAVSKEYPLDSEMIHMEKHRPRHPSFFSKIDNSTQS 663
Query: 645 DRP-HENQRMPKEALRRDDRLRLNHTLSDYQSFSGEEIPLSRSSSSSRDVDFESGRDVSS 703
DR HEN+R PKE+LRRD++LR N+ L D F GE+ ++SSS + D+DF R VS+
Sbjct: 664 DRMLHENRRPPKESLRRDEQLRSNNNLPDSHPFYGEDASWNQSSSRNSDLDFLPERSVSA 723
Query: 704 TETPSGVLQDIAMKCGTKVEFRPALVASTELQFSIEVLYALWLT 747
TET + VL IA+KCG KVE++P+LV+ST+L+FS+E WL+
Sbjct: 724 TETSADVLHGIAIKCGAKVEYKPSLVSSTDLRFSVEA----WLS 763
>sp|Q5YDB5|CPL2_ARATH RNA polymerase II C-terminal domain phosphatase-like 2
OS=Arabidopsis thaliana GN=CPL2 PE=1 SV=3
Length = 770
Score = 595 bits (1535), Expect = e-169, Method: Compositional matrix adjust.
Identities = 357/748 (47%), Positives = 451/748 (60%), Gaps = 68/748 (9%)
Query: 2 YKTVAYLGKEILGEVEIYPQQQGEGGEGEEKNKKVFDEIRISYFSEASERCPPLAVLHTI 61
+K+V Y G LGE+++ E N DEIRI + S A ERCPPLA+L TI
Sbjct: 6 HKSVVYHGDLRLGELDV--NHVSSSHEFRFPN----DEIRIHHLSPAGERCPPLAILQTI 59
Query: 62 TASGICFKMESKSSDNIQ-LHLLHSSCIRENKTAVMPLGLTEELHLVAMYSRNNEKQYPC 120
+ + K+ES + Q L LH+ C E KTAV+ LG EE+HLVAM S+ EK++PC
Sbjct: 60 ASFAVRCKLESSAPVKSQELMHLHAVCFHELKTAVVMLG-DEEIHLVAMPSK--EKKFPC 116
Query: 121 FWAFSVGSGLYNSCLTMLNLRCLGIVFDLDETLIVANTMRSFEDRIEALLRKISTEVDPQ 180
FW FSV SGLY+SCL MLN RCL IVFDLDETLIVANTM+SFEDRIEAL IS E+DP
Sbjct: 117 FWCFSVPSGLYDSCLRMLNTRCLSIVFDLDETLIVANTMKSFEDRIEALKSWISREMDPV 176
Query: 181 RIAGMQAEVKRYQDDKNILKQYAENDQVNENGKVIKVQSEVVPALSDSHQALVRPLIRLQ 240
RI GM AE+KRY DD+ +LKQY +ND +NG ++K Q E V SD + + RP+IRL
Sbjct: 177 RINGMSAELKRYMDDRMLLKQYIDNDYAFDNGVLLKAQPEEVRPTSDGQEKVCRPVIRLP 236
Query: 241 EKNIILTRINPQIRDTSVLVRLRPAWEDLRSYLTARGRKRFEVYVCTMAERDYALEMWRL 300
EKN +LTRI P+IRDTSVLV+LRPAWE+LRSYLTA+ RKRFEVYVCTMAERDYALEMWRL
Sbjct: 237 EKNTVLTRIKPEIRDTSVLVKLRPAWEELRSYLTAKTRKRFEVYVCTMAERDYALEMWRL 296
Query: 301 LDPESNLINTKELLDRIVCVKSGSRKSLFNVFQDGTCHPKMALVIDDRLKVWDDKDQPRV 360
LDPE++LI+ KEL DRIVCVK ++KSL +VF G CHPKMA+VIDDR+KVW+DKDQPRV
Sbjct: 297 LDPEAHLISLKELRDRIVCVKPDAKKSLLSVFNGGICHPKMAMVIDDRMKVWEDKDQPRV 356
Query: 361 HVVPAFAPYYAPQAEANNAIPVLCVARNIACNVRGGFFKEFDEGLLQRIPEISYEDDVKD 420
HVV A+ PYYAPQAE +P LCVARN+ACNVRG FFKEFDE L+ I + YEDDV++
Sbjct: 357 HVVSAYLPYYAPQAETALVVPHLCVARNVACNVRGYFFKEFDESLMSSISLVYYEDDVEN 416
Query: 421 IPSPPDVSNYLVSEDDAATANG-IKDPLSFDGMADAEVERRLKEAIAASATISSAVANLD 479
+P PDVSNY+V ED +NG I P +GM EVERRL +A AA + A +N +
Sbjct: 417 LPPSPDVSNYVVIEDPGFASNGNINAPPINEGMCGGEVERRLNQAAAADHSTLPATSNAE 476
Query: 480 PRLAPFQYTMPSSSSTTTLPTSQAAVMPLANMQFPPATSL--VKPLGHVGPPEQSLQSSP 537
+ P Q AV+P A L KP SL +P
Sbjct: 477 QK--------------PETPKPQIAVIPNNASTATAAALLPSHKP---------SLLGAP 513
Query: 538 AREEGEVPESELDPDTRRRLLILQHGMDTRENAPSEAPFPARTQMQVSVPRVPSRGSWFP 597
R+ + R L+++ G+D R ++ P A+ MQ + S G W
Sbjct: 514 RRDGFTFSDGG-------RPLMMRPGVDIRNQNFNQPPILAKIPMQPPSSSMHSPGGWL- 565
Query: 598 VEEEMSPRQLNRAVPKEFPLNSEAMQIEKHRPPHPSFFPKIENPSTSDRP--HENQRMPK 655
V++E P FP + +PS FP S P H + +
Sbjct: 566 VDDENRP---------SFPGRPSGL--------YPSQFPHGTPGSAPVGPFAHPSHLRSE 608
Query: 656 EALRRDDRLRLNHTLSDYQSFSGEEIPLSRSSSSSRDVDFESGR-DVSSTETPSGVLQDI 714
E DD R N + Q+ G I + S+ R+ + G+ + + LQ+I
Sbjct: 609 EVAMDDDLKRQNPS---RQTTEGG-ISQNHLVSNGREHHTDGGKSNGGQSHLFVSALQEI 664
Query: 715 AMKCGTKVEFRPALVASTELQFSIEVLY 742
+CG+KVEFR + + ELQFS+EVL+
Sbjct: 665 GRRCGSKVEFRTVISTNKELQFSVEVLF 692
>sp|Q03254|FCP1_YEAST RNA polymerase II subunit A C-terminal domain phosphatase
OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
GN=FCP1 PE=1 SV=1
Length = 732
Score = 49.7 bits (117), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 40/127 (31%), Positives = 64/127 (50%), Gaps = 17/127 (13%)
Query: 230 QALVRPLIRLQEKNIILTRINPQIRDTSVLVRLRPAWEDLRSYLTARGRKRFEVYVCTMA 289
+ LV PL+ + + +L P +R V++RP L+ + A+ FE+++ TMA
Sbjct: 219 EELVLPLMYMNDDGSMLRP--PPVRKCWYYVKVRPG---LKEFF-AKVAPLFEMHIYTMA 272
Query: 290 ERDYALEMWRLLDPESNLINTKELLDRIVCVK---SGSRKSLFNVFQDGTCHPKMALVID 346
R YAL++ +++DP L DRI+ S + KSL +F M +VID
Sbjct: 273 TRAYALQIAKIVDPTGELFG-----DRILSRDENGSLTTKSLAKLF---PTDQSMVVVID 324
Query: 347 DRLKVWD 353
DR VW+
Sbjct: 325 DRGDVWN 331
>sp|Q7TSG2|CTDP1_MOUSE RNA polymerase II subunit A C-terminal domain phosphatase OS=Mus
musculus GN=Ctdp1 PE=1 SV=1
Length = 960
Score = 48.9 bits (115), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 47/159 (29%), Positives = 69/159 (43%), Gaps = 24/159 (15%)
Query: 260 VRLRPAWEDLRSYLTARGRKRFEVYVCTMAERDYALEMWRLLDPESNLINTKELLDRIVC 319
RLRP +D + K +E++V T R YA + LDPE L + + +L R C
Sbjct: 223 TRLRPHCKDFLEKIA----KLYELHVFTFGSRLYAHTIAGFLDPEKKLFSHR-ILSRDEC 277
Query: 320 V----KSGSRKSLFNVFQDGTCHPKMALVIDDRLKVWDDKDQPRVHVVPAFAPYYAPQAE 375
+ K+G+ ++LF C M +IDDR VW K P + V + Y P
Sbjct: 278 IDPFSKTGNLRNLF------PCGDSMVCIIDDREDVW--KFAPNLITVKKY--VYFPGTG 327
Query: 376 ANNAIPV---LCVARNIACNVRGGFFKEFDEGLLQRIPE 411
NA P R + + +GG ++ L R PE
Sbjct: 328 DVNAPPAARETQARRKVNHSSKGG--DALEQALSVRDPE 364
>sp|Q9Y5B0|CTDP1_HUMAN RNA polymerase II subunit A C-terminal domain phosphatase OS=Homo
sapiens GN=CTDP1 PE=1 SV=3
Length = 961
Score = 48.9 bits (115), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 32/97 (32%), Positives = 47/97 (48%), Gaps = 15/97 (15%)
Query: 260 VRLRPAWEDLRSYLTARGRKRFEVYVCTMAERDYALEMWRLLDPESNLINTKELLDRIVC 319
RLRP +D + K +E++V T R YA + LDPE L + + +L R C
Sbjct: 223 TRLRPHCKDFLEKIA----KLYELHVFTFGSRLYAHTIAGFLDPEKKLFSHR-ILSRDEC 277
Query: 320 V----KSGSRKSLFNVFQDGTCHPKMALVIDDRLKVW 352
+ K+G+ ++LF C M +IDDR VW
Sbjct: 278 IDPFSKTGNLRNLF------PCGDSMVCIIDDREDVW 308
>sp|Q9P376|FCP1_SCHPO RNA polymerase II subunit A C-terminal domain phosphatase
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=fcp1 PE=1 SV=1
Length = 723
Score = 44.3 bits (103), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 42/76 (55%), Gaps = 11/76 (14%)
Query: 281 FEVYVCTMAERDYALEMWRLLDPESNLINTKELLDRIVCVK-SGS--RKSLFNVFQDGTC 337
+E+++ TM + YA E+ +++DP L DR++ SGS +KSL +F C
Sbjct: 237 YELHIYTMGTKAYAKEVAKIIDPTGKLFQ-----DRVLSRDDSGSLAQKSLRRLF---PC 288
Query: 338 HPKMALVIDDRLKVWD 353
M +VIDDR VWD
Sbjct: 289 DTSMVVVIDDRGDVWD 304
>sp|Q9N4V4|SCPL3_CAEEL CTD small phosphatase-like protein 3 OS=Caenorhabditis elegans
GN=scpl-3 PE=3 SV=1
Length = 287
Score = 42.7 bits (99), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 50/93 (53%), Gaps = 8/93 (8%)
Query: 258 VLVRLRPAWEDLRSYLTARGRKRFEVYVCTMAERDYALEMWRLLDPESNLINTKELLDRI 317
V VRLRP LR++L +R K FE+ + T +++ YA ++ +LDP N I + +
Sbjct: 101 VYVRLRP---HLRTFL-SRMAKTFEIIIFTASKKVYANKLCDILDPRKNHIRHRLFREHC 156
Query: 318 VCVKSGSRKSLFNVFQDGTCHPKMALVIDDRLK 350
VCV K L + +D P +++D+ ++
Sbjct: 157 VCVFGNYVKDLTILGRD----PSKTMILDNAVQ 185
>sp|Q5XIK8|CTSL2_RAT CTD small phosphatase-like protein 2 OS=Rattus norvegicus
GN=Ctdspl2 PE=2 SV=1
Length = 465
Score = 38.1 bits (87), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 39/71 (54%), Gaps = 4/71 (5%)
Query: 258 VLVRLRPAWEDLRSYLTARGRKRFEVYVCTMAERDYALEMWRLLDPESNLINTKELLDRI 317
V VRLRP + R +L R + +E+ + T +++ YA ++ +LDP+ L+ + +
Sbjct: 323 VYVRLRPFF---REFL-ERMSQMYEIILFTASKKVYADKLLNILDPKKQLVRHRLFREHC 378
Query: 318 VCVKSGSRKSL 328
VCV+ K L
Sbjct: 379 VCVQGNYIKDL 389
>sp|Q8BG15|CTSL2_MOUSE CTD small phosphatase-like protein 2 OS=Mus musculus GN=Ctdspl2
PE=1 SV=1
Length = 465
Score = 38.1 bits (87), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 39/71 (54%), Gaps = 4/71 (5%)
Query: 258 VLVRLRPAWEDLRSYLTARGRKRFEVYVCTMAERDYALEMWRLLDPESNLINTKELLDRI 317
V VRLRP + R +L R + +E+ + T +++ YA ++ +LDP+ L+ + +
Sbjct: 323 VYVRLRPFF---REFL-ERMSQMYEIILFTASKKVYADKLLNILDPKKQLVRHRLFREHC 378
Query: 318 VCVKSGSRKSL 328
VCV+ K L
Sbjct: 379 VCVQGNYIKDL 389
>sp|Q05D32|CTSL2_HUMAN CTD small phosphatase-like protein 2 OS=Homo sapiens GN=CTDSPL2
PE=1 SV=2
Length = 466
Score = 38.1 bits (87), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 39/71 (54%), Gaps = 4/71 (5%)
Query: 258 VLVRLRPAWEDLRSYLTARGRKRFEVYVCTMAERDYALEMWRLLDPESNLINTKELLDRI 317
V VRLRP + R +L R + +E+ + T +++ YA ++ +LDP+ L+ + +
Sbjct: 324 VYVRLRPFF---REFL-ERMSQMYEIILFTASKKVYADKLLNILDPKKQLVRHRLFREHC 379
Query: 318 VCVKSGSRKSL 328
VCV+ K L
Sbjct: 380 VCVQGNYIKDL 390
>sp|Q00IB6|CPL4_ARATH RNA polymerase II C-terminal domain phosphatase-like 4
OS=Arabidopsis thaliana GN=CPL4 PE=1 SV=1
Length = 440
Score = 37.7 bits (86), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 43/167 (25%), Positives = 70/167 (41%), Gaps = 29/167 (17%)
Query: 258 VLVRLRPAWEDLRSYLTARGRKRFEVYVCTMAERDYALEMWRLLDPESNLINTKELLDRI 317
++ +LRP + S+L + F +Y+ TM +R+YA +M +LLDP+ DR+
Sbjct: 175 MMTKLRPF---VHSFLK-EASEMFVMYIYTMGDRNYARQMAKLLDPKGEYFG-----DRV 225
Query: 318 VCVKSGS---RKSLFNVFQDGTCHPKMALVIDDRLKVW-DDKDQ----PRVHVVPA---- 365
+ G+ KSL V + L++DD W KD R H +
Sbjct: 226 ISRDDGTVRHEKSLDVVLGQESA----VLILDDTENAWPKHKDNLIVIERYHFFSSSCRQ 281
Query: 366 FAPYYAPQAE--ANNAIP--VLCVARNIACNVRGGFFKEFDEGLLQR 408
F Y +E ++ + P L + FF+ DEG+ R
Sbjct: 282 FDHRYKSLSELKSDESEPDGALATVLKVLKQAHALFFENVDEGISNR 328
>sp|Q5F3Z7|CTSL2_CHICK CTD small phosphatase-like protein 2 OS=Gallus gallus GN=CTDSPL2
PE=2 SV=2
Length = 466
Score = 37.7 bits (86), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 39/71 (54%), Gaps = 4/71 (5%)
Query: 258 VLVRLRPAWEDLRSYLTARGRKRFEVYVCTMAERDYALEMWRLLDPESNLINTKELLDRI 317
V VRLRP + R +L R + +E+ + T +++ YA ++ +LDP+ L+ + +
Sbjct: 324 VYVRLRPFF---REFL-ERMSQIYEIILFTASKKVYADKLLNILDPKKQLVRHRLFREHC 379
Query: 318 VCVKSGSRKSL 328
VCV+ K L
Sbjct: 380 VCVQGNYIKDL 390
>sp|Q08BB5|CTL2A_DANRE CTD small phosphatase-like protein 2-A OS=Danio rerio GN=ctdspl2a
PE=2 SV=1
Length = 469
Score = 37.7 bits (86), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 39/71 (54%), Gaps = 4/71 (5%)
Query: 258 VLVRLRPAWEDLRSYLTARGRKRFEVYVCTMAERDYALEMWRLLDPESNLINTKELLDRI 317
V VRLRP + R +L R + +E+ + T +++ YA ++ +LDP+ L+ + +
Sbjct: 327 VYVRLRPFF---REFL-ERMSQIYEIILFTASKKVYADKLLNILDPKKQLVRHRLFREHC 382
Query: 318 VCVKSGSRKSL 328
VCV+ K L
Sbjct: 383 VCVQGNYIKDL 393
>sp|A4QNX6|CTL2B_DANRE CTD small phosphatase-like protein 2-B OS=Danio rerio GN=ctdspl2b
PE=2 SV=1
Length = 460
Score = 37.0 bits (84), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 38/71 (53%), Gaps = 4/71 (5%)
Query: 258 VLVRLRPAWEDLRSYLTARGRKRFEVYVCTMAERDYALEMWRLLDPESNLINTKELLDRI 317
V VRLRP + R +L R + +E+ + T +++ YA ++ +LDP L+ + +
Sbjct: 318 VYVRLRPFF---REFL-ERMSQIYEIILFTASKKVYADKLLNILDPRKQLVRHRLFREHC 373
Query: 318 VCVKSGSRKSL 328
VCV+ K L
Sbjct: 374 VCVQGNYIKDL 384
>sp|Q3KQB6|CTL2B_XENLA CTD small phosphatase-like protein 2-B OS=Xenopus laevis
GN=ctdspl2-b PE=2 SV=1
Length = 466
Score = 37.0 bits (84), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 39/71 (54%), Gaps = 4/71 (5%)
Query: 258 VLVRLRPAWEDLRSYLTARGRKRFEVYVCTMAERDYALEMWRLLDPESNLINTKELLDRI 317
V VRLRP + R +L R + +E+ + T +++ YA ++ +LDP+ L+ + +
Sbjct: 324 VYVRLRPFF---REFL-ERMSQIYEIILFTASKKVYADKLLNILDPKKRLVRHRLFREHC 379
Query: 318 VCVKSGSRKSL 328
VCV+ K L
Sbjct: 380 VCVQGNYIKDL 390
>sp|Q801R4|CTL2A_XENLA CTD small phosphatase-like protein 2-A OS=Xenopus laevis
GN=ctdspl2-a PE=2 SV=1
Length = 466
Score = 37.0 bits (84), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 39/71 (54%), Gaps = 4/71 (5%)
Query: 258 VLVRLRPAWEDLRSYLTARGRKRFEVYVCTMAERDYALEMWRLLDPESNLINTKELLDRI 317
V VRLRP + R +L R + +E+ + T +++ YA ++ +LDP+ L+ + +
Sbjct: 324 VYVRLRPFF---REFL-ERMSQIYEIILFTASKKVYADKLLNILDPKKRLVRHRLFREHC 379
Query: 318 VCVKSGSRKSL 328
VCV+ K L
Sbjct: 380 VCVQGNYIKDL 390
>sp|Q66KM5|CTSL2_XENTR CTD small phosphatase-like protein 2 OS=Xenopus tropicalis
GN=ctdspl2 PE=2 SV=1
Length = 466
Score = 36.6 bits (83), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 39/71 (54%), Gaps = 4/71 (5%)
Query: 258 VLVRLRPAWEDLRSYLTARGRKRFEVYVCTMAERDYALEMWRLLDPESNLINTKELLDRI 317
V VRLRP + R +L R + +E+ + T +++ YA ++ +LDP+ L+ + +
Sbjct: 324 VYVRLRPFF---REFL-ERMSQIYEIILFTASKKVYADKLLNILDPKKRLVRHRLFREHC 379
Query: 318 VCVKSGSRKSL 328
VCV+ K L
Sbjct: 380 VCVQGNYIKDL 390
>sp|Q8CSB6|Y1287_STAES UPF0271 protein SE_1287 OS=Staphylococcus epidermidis (strain ATCC
12228) GN=SE_1287 PE=3 SV=1
Length = 252
Score = 35.8 bits (81), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 31/110 (28%), Positives = 47/110 (42%), Gaps = 34/110 (30%)
Query: 146 VFDLDETLI---VANTMRSFEDRIEALLRKISTEVDPQRIAGMQAEVKRYQDDKNI---- 198
VFD D LI +ANT+ E + L K+++EV R RY+DD +
Sbjct: 134 VFDFDSNLIFVGLANTLLISEAELVGL--KVASEVFADR---------RYEDDGQLVSRK 182
Query: 199 ----------------LKQYAENDQVNENGKVIKVQSEVVPALSDSHQAL 232
LK EN V++NGK+I ++++ + D AL
Sbjct: 183 KTDATITNTDEAIQQALKMVLENKVVSKNGKIIDLKADTICVHGDGKHAL 232
>sp|Q5HNU6|Y1168_STAEQ UPF0271 protein SERP1168 OS=Staphylococcus epidermidis (strain ATCC
35984 / RP62A) GN=SERP1168 PE=3 SV=1
Length = 252
Score = 35.8 bits (81), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 31/110 (28%), Positives = 47/110 (42%), Gaps = 34/110 (30%)
Query: 146 VFDLDETLI---VANTMRSFEDRIEALLRKISTEVDPQRIAGMQAEVKRYQDDKNI---- 198
VFD D LI +ANT+ E + L K+++EV R RY+DD +
Sbjct: 134 VFDFDSNLIFVGLANTLLISEAELVGL--KVASEVFADR---------RYEDDGQLVSRK 182
Query: 199 ----------------LKQYAENDQVNENGKVIKVQSEVVPALSDSHQAL 232
LK EN V++NGK+I ++++ + D AL
Sbjct: 183 KTDATITNTDEAIQQALKMVLENKVVSKNGKIIDLKADTICVHGDGKHAL 232
>sp|B4H732|SRRT_DROPE Serrate RNA effector molecule homolog OS=Drosophila persimilis
GN=Ars2 PE=3 SV=1
Length = 951
Score = 34.7 bits (78), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 34/131 (25%), Positives = 63/131 (48%), Gaps = 21/131 (16%)
Query: 143 LGIVFDLDETLIVANTMRSFEDRIEALLRKIST-----EVDPQRIAG---MQAEVKRYQD 194
L +D+++ L + +D+ EA K+ + E+ P++ A ++ E K +D
Sbjct: 407 LKAKYDVEDGLRAEQKAEAEKDQAEAAKAKLGSVSPKEEISPEKSAADPEVEGEAK--ED 464
Query: 195 DKNILKQ-YAENDQVNENGKVIKVQSEVVPALSDSHQALVRPLIRLQEKNIILTRINP-- 251
K K +++++ ENG KV+S PA D+ Q V+P+ I L ++NP
Sbjct: 465 GKQAEKSPKSDDEKKQENGDAAKVESAAEPATGDA-QGEVKPVT------IDLDKVNPPR 517
Query: 252 -QIRDTSVLVR 261
R +S+ +R
Sbjct: 518 DMHRTSSIFLR 528
>sp|Q28WQ8|SRRT_DROPS Serrate RNA effector molecule homolog OS=Drosophila pseudoobscura
pseudoobscura GN=Ars2 PE=3 SV=2
Length = 951
Score = 34.3 bits (77), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 34/131 (25%), Positives = 62/131 (47%), Gaps = 21/131 (16%)
Query: 143 LGIVFDLDETLIVANTMRSFEDRIEALLRKIST-----EVDPQRIAG---MQAEVKRYQD 194
L +D+++ L + +D+ EA K+ + E+ P++ A ++ E K +D
Sbjct: 407 LKAKYDVEDGLRAEQKAEAEKDQAEAAKAKLGSVSPKEEISPEKSAADPEVEGEAK--ED 464
Query: 195 DKNILKQ-YAENDQVNENGKVIKVQSEVVPALSDSHQALVRPLIRLQEKNIILTRINP-- 251
K K ++++ ENG KV+S PA D+ Q V+P+ I L ++NP
Sbjct: 465 GKQAEKSPKCDDEKKQENGDAAKVESAAEPATGDA-QGEVKPVT------IDLDKVNPPR 517
Query: 252 -QIRDTSVLVR 261
R +S+ +R
Sbjct: 518 AMHRTSSIFLR 528
>sp|Q8SV03|FCP1_ENCCU RNA polymerase II subunit A C-terminal domain phosphatase
OS=Encephalitozoon cuniculi (strain GB-M1) GN=FCP1 PE=1
SV=1
Length = 411
Score = 33.9 bits (76), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 44/95 (46%), Gaps = 11/95 (11%)
Query: 260 VRLRPAWEDLRSYLTARGRKRFEVYVCTMAERDYALEMWRLLDPESNLINTKELLDRIVC 319
V+LRP + Y+ R K +E++V TM R YA + ++DP + DRI+
Sbjct: 96 VKLRPNLD----YMLRRISKLYEIHVYTMGTRAYAERIVEIIDPSGKYFD-----DRII- 145
Query: 320 VKSGSRKSLFNVFQDGTCHPKMALVI-DDRLKVWD 353
+ ++ L H +VI DDR VWD
Sbjct: 146 TRDENQGVLVKRLSRLFPHDHRNIVILDDRPDVWD 180
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.316 0.132 0.384
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 279,119,246
Number of Sequences: 539616
Number of extensions: 12085422
Number of successful extensions: 35659
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 110
Number of HSP's that attempted gapping in prelim test: 35548
Number of HSP's gapped (non-prelim): 213
length of query: 749
length of database: 191,569,459
effective HSP length: 125
effective length of query: 624
effective length of database: 124,117,459
effective search space: 77449294416
effective search space used: 77449294416
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 65 (29.6 bits)