Query 004493
Match_columns 749
No_of_seqs 178 out of 271
Neff 3.4
Searched_HMMs 46136
Date Fri Mar 29 00:20:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004493.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/004493hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0323 TFIIF-interacting CTD 100.0 2E-65 4.3E-70 570.1 19.3 507 35-744 4-517 (635)
2 TIGR02250 FCP1_euk FCP1-like p 99.9 9E-28 2E-32 228.6 11.3 102 255-369 52-156 (156)
3 PF03031 NIF: NLI interacting 99.8 4.1E-20 8.8E-25 171.7 6.4 100 255-369 30-135 (159)
4 TIGR02251 HIF-SF_euk Dullard-l 99.8 2.7E-19 6E-24 170.4 11.2 117 255-394 36-158 (162)
5 KOG1605 TFIIF-interacting CTD 99.6 1.4E-16 3.1E-21 164.5 2.6 130 256-396 126-255 (262)
6 smart00577 CPDc catalytic doma 99.6 5.2E-15 1.1E-19 138.2 11.5 102 254-370 38-145 (148)
7 COG5190 FCP1 TFIIF-interacting 99.5 3.4E-14 7.5E-19 153.7 5.1 88 253-352 68-158 (390)
8 TIGR02245 HAD_IIID1 HAD-superf 99.3 2.1E-12 4.6E-17 128.7 8.8 104 259-367 43-156 (195)
9 COG5190 FCP1 TFIIF-interacting 98.1 5.9E-06 1.3E-10 90.6 6.4 102 255-366 246-347 (390)
10 TIGR01489 DKMTPPase-SF 2,3-dik 98.0 8.3E-05 1.8E-09 69.6 11.2 39 260-301 71-109 (188)
11 TIGR02253 CTE7 HAD superfamily 97.8 1.2E-05 2.6E-10 77.8 3.7 81 259-349 92-177 (221)
12 PF13419 HAD_2: Haloacid dehal 97.8 2.7E-05 6E-10 70.2 5.2 81 259-349 75-160 (176)
13 KOG2832 TFIIF-interacting CTD 97.8 5.4E-05 1.2E-09 82.6 7.9 134 249-394 201-337 (393)
14 PLN02770 haloacid dehalogenase 97.8 0.00015 3.3E-09 73.2 10.3 80 260-349 107-191 (248)
15 TIGR01685 MDP-1 magnesium-depe 97.7 0.00012 2.6E-09 72.3 7.9 101 259-362 43-153 (174)
16 TIGR01449 PGP_bact 2-phosphogl 97.6 0.00041 8.9E-09 66.7 10.8 82 259-350 83-169 (213)
17 PRK13288 pyrophosphatase PpaX; 97.6 0.00045 9.7E-09 67.3 10.7 81 260-350 81-166 (214)
18 TIGR01454 AHBA_synth_RP 3-amin 97.5 0.00044 9.6E-09 66.9 9.5 81 259-349 73-158 (205)
19 TIGR01548 HAD-SF-IA-hyp1 haloa 97.5 0.00062 1.3E-08 65.8 10.3 79 261-349 106-188 (197)
20 TIGR01509 HAD-SF-IA-v3 haloaci 97.5 0.00057 1.2E-08 63.6 9.5 79 260-349 84-167 (183)
21 TIGR01993 Pyr-5-nucltdase pyri 97.5 0.00062 1.3E-08 64.9 9.9 78 259-349 82-168 (184)
22 TIGR01488 HAD-SF-IB Haloacid D 97.5 0.00069 1.5E-08 63.2 10.0 45 261-309 73-117 (177)
23 PLN03243 haloacid dehalogenase 97.5 0.00063 1.4E-08 70.3 10.4 77 260-350 108-193 (260)
24 TIGR01549 HAD-SF-IA-v1 haloaci 97.4 0.00065 1.4E-08 62.5 8.6 75 262-348 65-143 (154)
25 cd01427 HAD_like Haloacid deha 97.4 0.00031 6.8E-09 60.2 5.6 40 260-302 23-62 (139)
26 PRK13223 phosphoglycolate phos 97.4 0.00046 9.9E-09 71.2 7.8 80 260-349 100-184 (272)
27 PRK13222 phosphoglycolate phos 97.4 0.0012 2.7E-08 63.9 10.3 80 260-349 92-176 (226)
28 TIGR01491 HAD-SF-IB-PSPlk HAD- 97.4 0.0011 2.4E-08 62.9 9.7 46 260-309 79-124 (201)
29 PRK13225 phosphoglycolate phos 97.4 0.00087 1.9E-08 69.8 9.5 80 260-349 141-222 (273)
30 PRK10826 2-deoxyglucose-6-phos 97.4 0.00096 2.1E-08 65.5 9.3 92 260-361 91-187 (222)
31 PLN02954 phosphoserine phospha 97.3 0.0014 3E-08 64.1 10.0 47 260-309 83-130 (224)
32 TIGR00338 serB phosphoserine p 97.3 0.001 2.2E-08 64.8 8.9 46 260-309 84-129 (219)
33 PLN02575 haloacid dehalogenase 97.3 0.0014 3.1E-08 72.1 10.9 81 260-350 215-300 (381)
34 TIGR01428 HAD_type_II 2-haloal 97.3 0.0003 6.4E-09 67.6 4.9 79 261-349 92-175 (198)
35 PRK11587 putative phosphatase; 97.3 0.0018 3.9E-08 63.7 10.1 80 259-349 81-165 (218)
36 PLN02940 riboflavin kinase 97.2 0.00024 5.3E-09 77.1 4.2 81 260-350 92-178 (382)
37 PRK13226 phosphoglycolate phos 97.2 0.0015 3.3E-08 65.1 9.4 81 259-349 93-178 (229)
38 TIGR03351 PhnX-like phosphonat 97.2 0.0014 2.9E-08 64.0 8.8 81 260-349 86-173 (220)
39 TIGR01422 phosphonatase phosph 97.2 0.0021 4.6E-08 64.5 10.4 93 260-362 98-197 (253)
40 TIGR02252 DREG-2 REG-2-like, H 97.2 0.0014 2.9E-08 63.2 8.7 79 260-349 104-187 (203)
41 COG0546 Gph Predicted phosphat 97.2 0.0042 9.2E-08 61.9 12.0 87 259-355 87-179 (220)
42 TIGR01990 bPGM beta-phosphoglu 97.1 0.0019 4.1E-08 60.7 8.2 78 260-349 86-168 (185)
43 PRK10725 fructose-1-P/6-phosph 97.0 0.00052 1.1E-08 65.0 3.5 78 261-350 88-170 (188)
44 COG1011 Predicted hydrolase (H 97.0 0.0009 1.9E-08 64.8 5.1 80 260-350 98-182 (229)
45 PRK13478 phosphonoacetaldehyde 96.9 0.0078 1.7E-07 61.3 11.3 81 260-349 100-186 (267)
46 PRK09552 mtnX 2-hydroxy-3-keto 96.8 0.0063 1.4E-07 60.2 9.0 39 260-301 73-111 (219)
47 TIGR02247 HAD-1A3-hyp Epoxide 96.7 0.0025 5.5E-08 61.8 5.8 83 259-349 92-179 (211)
48 PRK10563 6-phosphogluconate ph 96.7 0.0015 3.2E-08 63.9 4.0 92 259-363 86-183 (221)
49 PRK13582 thrH phosphoserine ph 96.6 0.01 2.2E-07 57.2 8.9 40 260-303 67-106 (205)
50 TIGR03333 salvage_mtnX 2-hydro 96.6 0.013 2.8E-07 57.9 9.8 47 260-309 69-115 (214)
51 TIGR01533 lipo_e_P4 5'-nucleot 96.4 0.017 3.6E-07 61.0 9.6 77 263-349 120-198 (266)
52 PHA02597 30.2 hypothetical pro 96.3 0.0079 1.7E-07 58.0 6.2 83 259-350 72-156 (197)
53 PHA03398 viral phosphatase sup 96.3 0.011 2.4E-07 63.7 7.5 104 262-401 148-255 (303)
54 PRK09456 ?-D-glucose-1-phospha 96.1 0.02 4.3E-07 55.7 7.9 82 259-349 82-168 (199)
55 TIGR01684 viral_ppase viral ph 96.1 0.01 2.2E-07 63.9 6.0 51 261-321 145-196 (301)
56 PRK08238 hypothetical protein; 95.8 0.042 9.1E-07 62.2 9.9 78 261-356 72-159 (479)
57 COG0560 SerB Phosphoserine pho 95.8 0.036 7.8E-07 56.2 8.5 86 260-348 76-169 (212)
58 TIGR02137 HSK-PSP phosphoserin 95.7 0.027 6E-07 56.4 7.2 44 261-309 68-111 (203)
59 COG4996 Predicted phosphatase 95.7 0.022 4.8E-07 55.9 6.0 94 259-364 39-143 (164)
60 PRK10748 flavin mononucleotide 95.7 0.016 3.5E-07 58.3 5.3 85 260-361 112-203 (238)
61 PLN02919 haloacid dehalogenase 95.6 0.046 9.9E-07 67.1 9.7 80 262-350 162-246 (1057)
62 TIGR01672 AphA HAD superfamily 95.5 0.04 8.6E-07 57.2 7.6 72 264-349 117-194 (237)
63 COG0637 Predicted phosphatase/ 95.5 0.014 3.1E-07 58.7 4.1 76 260-349 85-169 (221)
64 PF06888 Put_Phosphatase: Puta 95.2 0.11 2.4E-06 54.1 9.6 38 262-300 72-109 (234)
65 TIGR01490 HAD-SF-IB-hyp1 HAD-s 95.2 0.0095 2.1E-07 57.2 1.7 46 260-309 86-131 (202)
66 TIGR01686 FkbH FkbH-like domai 95.2 0.033 7.1E-07 59.0 5.7 81 263-349 33-113 (320)
67 PRK11133 serB phosphoserine ph 95.0 0.096 2.1E-06 56.5 8.8 41 260-303 180-220 (322)
68 KOG3109 Haloacid dehalogenase- 94.9 0.033 7.1E-07 58.3 4.7 73 269-350 105-189 (244)
69 TIGR01681 HAD-SF-IIIC HAD-supe 94.6 0.03 6.6E-07 51.9 3.3 86 261-349 29-118 (128)
70 PRK11590 hypothetical protein; 94.5 0.072 1.6E-06 52.9 6.0 40 260-302 94-134 (211)
71 TIGR01664 DNA-3'-Pase DNA 3'-p 94.5 0.11 2.3E-06 50.7 7.0 78 260-349 41-137 (166)
72 TIGR02254 YjjG/YfnB HAD superf 94.2 0.083 1.8E-06 51.1 5.5 79 260-352 96-185 (224)
73 KOG0323 TFIIF-interacting CTD 94.1 0.074 1.6E-06 62.4 5.7 68 377-459 394-461 (635)
74 PRK14988 GMP/IMP nucleotidase; 94.1 0.069 1.5E-06 53.6 4.9 81 260-350 92-177 (224)
75 PRK11009 aphA acid phosphatase 93.9 0.18 3.9E-06 52.5 7.6 40 259-301 112-155 (237)
76 PRK09449 dUMP phosphatase; Pro 93.0 0.17 3.8E-06 49.5 5.4 84 260-354 94-185 (224)
77 PRK06698 bifunctional 5'-methy 91.1 0.46 9.9E-06 52.8 6.6 79 259-349 328-410 (459)
78 TIGR02009 PGMB-YQAB-SF beta-ph 90.7 0.31 6.8E-06 45.9 4.2 78 260-349 87-169 (185)
79 PF12710 HAD: haloacid dehalog 90.4 1 2.2E-05 42.5 7.3 38 264-304 92-129 (192)
80 PF12689 Acid_PPase: Acid Phos 89.5 1.3 2.9E-05 44.2 7.7 88 258-349 42-134 (169)
81 TIGR01691 enolase-ppase 2,3-di 89.3 0.61 1.3E-05 47.9 5.2 86 259-350 93-180 (220)
82 smart00559 Ku78 Ku70 and Ku80 87.6 2.7 5.9E-05 40.2 8.1 85 36-127 34-124 (140)
83 PLN02779 haloacid dehalogenase 87.2 0.82 1.8E-05 48.0 4.8 96 260-363 143-243 (286)
84 TIGR01261 hisB_Nterm histidino 86.4 1.4 2.9E-05 43.1 5.5 80 259-349 27-130 (161)
85 PF05152 DUF705: Protein of un 85.7 1.3 2.9E-05 48.1 5.4 47 264-321 145-192 (297)
86 TIGR01493 HAD-SF-IA-v2 Haloaci 84.7 0.4 8.7E-06 45.1 1.0 73 260-349 89-166 (175)
87 PF08282 Hydrolase_3: haloacid 83.7 0.86 1.9E-05 43.8 2.7 29 145-174 1-29 (254)
88 TIGR01482 SPP-subfamily Sucros 82.5 1.1 2.3E-05 43.9 2.9 28 145-174 1-29 (225)
89 PLN02811 hydrolase 82.2 2.1 4.5E-05 42.6 4.8 80 260-350 77-168 (220)
90 PHA02530 pseT polynucleotide k 81.0 1.8 3.9E-05 44.7 4.0 80 260-351 186-281 (300)
91 TIGR01656 Histidinol-ppas hist 79.8 3.6 7.9E-05 38.7 5.3 39 261-302 27-80 (147)
92 TIGR01485 SPP_plant-cyano sucr 79.0 0.92 2E-05 46.0 1.2 14 142-155 1-14 (249)
93 KOG3120 Predicted haloacid deh 78.9 2 4.4E-05 45.6 3.6 35 264-300 87-121 (256)
94 PF03767 Acid_phosphat_B: HAD 77.6 1.8 4E-05 44.5 2.9 26 264-292 118-143 (229)
95 PTZ00174 phosphomannomutase; P 76.5 3.5 7.7E-05 42.1 4.5 31 142-174 5-36 (247)
96 TIGR01675 plant-AP plant acid 73.1 2 4.4E-05 45.0 1.8 95 264-369 123-227 (229)
97 PRK01158 phosphoglycolate phos 72.6 3 6.5E-05 41.1 2.8 29 144-174 5-34 (230)
98 TIGR02461 osmo_MPG_phos mannos 72.0 2.9 6.2E-05 42.6 2.6 29 145-175 2-30 (225)
99 KOG1615 Phosphoserine phosphat 72.0 32 0.0007 36.4 10.0 41 261-304 88-128 (227)
100 PRK03669 mannosyl-3-phosphogly 70.6 3.1 6.8E-05 42.8 2.5 32 142-174 7-38 (271)
101 PRK12702 mannosyl-3-phosphogly 70.4 4 8.6E-05 44.6 3.4 66 144-216 3-70 (302)
102 cd00594 KU Ku-core domain; inc 70.4 19 0.00041 37.3 8.1 86 36-128 87-176 (272)
103 COG0561 Cof Predicted hydrolas 70.4 7.4 0.00016 39.5 5.1 28 142-170 3-30 (264)
104 PRK10513 sugar phosphate phosp 69.9 3.7 8.1E-05 41.6 2.9 29 144-174 5-34 (270)
105 TIGR00099 Cof-subfamily Cof su 69.6 3.6 7.7E-05 41.6 2.7 30 145-175 2-31 (256)
106 TIGR01493 HAD-SF-IA-v2 Haloaci 69.5 2.9 6.3E-05 39.4 1.9 14 144-157 1-14 (175)
107 PF11019 DUF2608: Protein of u 69.2 26 0.00057 36.9 9.0 25 326-350 165-189 (252)
108 TIGR01544 HAD-SF-IE haloacid d 68.7 7.4 0.00016 41.9 4.9 38 260-300 120-157 (277)
109 TIGR01663 PNK-3'Pase polynucle 68.5 8.7 0.00019 44.8 5.7 37 263-302 199-247 (526)
110 TIGR01668 YqeG_hyp_ppase HAD s 68.0 8.6 0.00019 37.4 4.8 86 261-361 43-131 (170)
111 TIGR02244 HAD-IG-Ncltidse HAD 67.7 7 0.00015 43.2 4.6 60 258-320 181-241 (343)
112 TIGR01681 HAD-SF-IIIC HAD-supe 67.6 4.5 9.8E-05 37.6 2.7 14 144-157 2-15 (128)
113 TIGR01459 HAD-SF-IIA-hyp4 HAD- 67.4 7.8 0.00017 39.3 4.6 80 261-349 24-105 (242)
114 PRK09449 dUMP phosphatase; Pro 67.1 3.4 7.3E-05 40.6 1.8 12 144-155 5-16 (224)
115 PRK10976 putative hydrolase; P 66.3 4.6 0.0001 40.9 2.7 30 144-174 4-33 (266)
116 PRK10530 pyridoxal phosphate ( 66.1 4.6 9.9E-05 40.7 2.6 30 144-174 5-34 (272)
117 TIGR01689 EcbF-BcbF capsule bi 65.8 5.2 0.00011 38.4 2.8 13 144-156 3-15 (126)
118 PRK15126 thiamin pyrimidine py 65.7 4.8 0.0001 41.1 2.7 30 144-174 4-33 (272)
119 TIGR02463 MPGP_rel mannosyl-3- 65.0 4.9 0.00011 39.6 2.5 28 145-173 2-29 (221)
120 PRK08942 D,D-heptose 1,7-bisph 64.3 19 0.00041 34.9 6.4 29 260-291 28-56 (181)
121 PF02735 Ku: Ku70/Ku80 beta-ba 63.8 26 0.00056 34.9 7.3 86 36-127 81-172 (200)
122 TIGR01662 HAD-SF-IIIA HAD-supe 63.2 12 0.00027 34.0 4.6 84 260-355 24-121 (132)
123 TIGR00213 GmhB_yaeD D,D-heptos 62.7 22 0.00048 34.4 6.5 29 260-291 25-53 (176)
124 TIGR02009 PGMB-YQAB-SF beta-ph 61.9 3.5 7.7E-05 38.9 0.9 14 144-157 3-16 (185)
125 TIGR02254 YjjG/YfnB HAD superf 61.0 3.7 8E-05 39.8 0.9 16 144-159 3-18 (224)
126 TIGR01487 SPP-like sucrose-pho 61.0 7.1 0.00015 38.5 2.8 28 144-173 3-31 (215)
127 PF00702 Hydrolase: haloacid d 60.4 19 0.0004 34.4 5.5 80 258-349 124-205 (215)
128 PRK05446 imidazole glycerol-ph 59.1 15 0.00033 40.7 5.3 28 259-289 28-55 (354)
129 PRK06769 hypothetical protein; 58.2 20 0.00044 35.0 5.4 28 261-291 28-55 (173)
130 PLN02423 phosphomannomutase 58.0 10 0.00022 39.2 3.4 30 142-173 7-37 (245)
131 PRK14988 GMP/IMP nucleotidase; 56.0 5.3 0.00012 40.3 1.1 13 144-156 12-24 (224)
132 TIGR00578 ku70 ATP-dependent D 55.6 35 0.00076 40.2 7.6 86 36-128 317-415 (584)
133 cd00789 KU_like Ku-core domain 55.0 43 0.00093 35.7 7.5 78 36-127 85-163 (256)
134 TIGR01486 HAD-SF-IIB-MPGP mann 53.6 9.2 0.0002 38.9 2.3 28 145-173 2-29 (256)
135 TIGR01680 Veg_Stor_Prot vegeta 53.5 7.6 0.00016 42.0 1.8 77 264-352 148-235 (275)
136 TIGR01662 HAD-SF-IIIA HAD-supe 53.0 12 0.00025 34.1 2.7 12 144-155 2-13 (132)
137 PLN02151 trehalose-phosphatase 52.8 14 0.0003 41.2 3.7 26 129-154 85-110 (354)
138 TIGR01456 CECR5 HAD-superfamil 52.6 9.8 0.00021 40.8 2.4 28 143-172 1-28 (321)
139 TIGR01484 HAD-SF-IIB HAD-super 51.8 11 0.00024 36.6 2.4 13 145-157 2-14 (204)
140 PLN03017 trehalose-phosphatase 51.4 9.8 0.00021 42.6 2.3 27 128-154 97-123 (366)
141 PRK00192 mannosyl-3-phosphogly 50.0 12 0.00026 38.6 2.5 30 143-173 5-34 (273)
142 PLN02887 hydrolase family prot 48.4 16 0.00034 43.2 3.4 36 139-175 305-340 (580)
143 PLN02779 haloacid dehalogenase 48.2 7.6 0.00016 41.0 0.8 14 144-157 42-55 (286)
144 cd00873 KU80 Ku-core domain, K 47.7 64 0.0014 34.6 7.6 84 37-127 96-183 (300)
145 cd00788 KU70 Ku-core domain, K 47.5 70 0.0015 34.1 7.7 85 36-127 93-190 (287)
146 TIGR02471 sucr_syn_bact_C sucr 46.8 13 0.00027 37.4 2.0 23 145-169 2-24 (236)
147 TIGR01545 YfhB_g-proteo haloac 43.8 9.8 0.00021 38.5 0.8 38 260-300 93-131 (210)
148 PF05116 S6PP: Sucrose-6F-phos 43.6 15 0.00032 38.1 2.0 13 142-154 2-14 (247)
149 PF00035 dsrm: Double-stranded 43.2 12 0.00027 30.1 1.1 38 707-744 1-41 (67)
150 COG2503 Predicted secreted aci 43.0 8.9 0.00019 41.4 0.3 17 140-156 77-93 (274)
151 TIGR01457 HAD-SF-IIA-hyp2 HAD- 42.9 14 0.00029 38.2 1.6 29 144-174 3-31 (249)
152 COG2179 Predicted hydrolase of 42.3 14 0.00031 37.8 1.6 21 136-156 22-42 (175)
153 TIGR02772 Ku_bact Ku protein, 41.8 91 0.002 33.3 7.5 78 36-127 86-164 (258)
154 smart00775 LNS2 LNS2 domain. T 41.3 21 0.00046 34.8 2.6 22 144-165 1-22 (157)
155 TIGR01656 Histidinol-ppas hist 40.2 23 0.0005 33.4 2.6 15 144-158 2-16 (147)
156 KOG2914 Predicted haloacid-hal 39.9 96 0.0021 32.7 7.2 82 258-351 89-181 (222)
157 cd00048 DSRM Double-stranded R 39.4 14 0.0003 29.3 0.8 38 707-744 2-42 (68)
158 PRK10187 trehalose-6-phosphate 39.4 15 0.00032 38.5 1.3 15 142-156 14-28 (266)
159 smart00358 DSRM Double-strande 39.4 14 0.00029 29.5 0.8 38 707-744 1-40 (67)
160 TIGR00685 T6PP trehalose-phosp 39.3 15 0.00033 37.5 1.3 15 141-155 2-16 (244)
161 PF02839 CBM_5_12: Carbohydrat 38.2 17 0.00036 27.8 1.1 21 201-221 9-29 (41)
162 PRK06698 bifunctional 5'-methy 37.8 12 0.00026 41.8 0.4 14 144-157 243-256 (459)
163 TIGR01458 HAD-SF-IIA-hyp3 HAD- 36.9 19 0.00041 37.4 1.5 31 144-174 3-35 (257)
164 PLN02382 probable sucrose-phos 35.6 25 0.00054 39.5 2.4 17 140-156 7-23 (413)
165 PRK10444 UMP phosphatase; Prov 33.9 24 0.00051 36.8 1.8 28 144-173 3-30 (248)
166 PRK14502 bifunctional mannosyl 32.7 34 0.00074 41.4 3.0 33 141-174 415-447 (694)
167 PF08645 PNK3P: Polynucleotide 32.4 22 0.00047 34.8 1.1 16 145-160 3-18 (159)
168 TIGR01452 PGP_euk phosphoglyco 30.7 29 0.00063 36.2 1.8 28 144-173 4-31 (279)
169 KOG1924 RhoA GTPase effector D 29.3 1.3E+02 0.0028 37.6 6.7 15 393-407 420-434 (1102)
170 cd00036 ChtBD3 Chitin/cellulos 28.7 32 0.0007 26.2 1.3 19 201-219 7-25 (41)
171 PF00702 Hydrolase: haloacid d 27.8 30 0.00066 33.0 1.2 14 144-157 3-16 (215)
172 TIGR01545 YfhB_g-proteo haloac 27.7 71 0.0015 32.4 3.9 19 144-162 7-25 (210)
173 TIGR01525 ATPase-IB_hvy heavy 27.5 67 0.0015 37.1 4.1 42 259-303 382-424 (556)
174 TIGR01670 YrbI-phosphatas 3-de 27.1 27 0.0006 33.4 0.8 67 269-349 36-102 (154)
175 PHA02629 A-type inclusion body 26.9 1.3E+02 0.0029 25.9 4.6 28 181-208 34-61 (61)
176 PF09921 DUF2153: Uncharacteri 26.8 1E+02 0.0022 30.4 4.5 41 161-206 41-85 (126)
177 cd01773 Faf1_like1_UBX Faf1 ik 26.5 2.6E+02 0.0057 25.5 6.8 77 230-348 3-81 (82)
178 PF09419 PGP_phosphatase: Mito 25.9 51 0.0011 33.3 2.5 21 139-159 38-58 (168)
179 PRK09484 3-deoxy-D-manno-octul 25.2 32 0.00069 33.9 0.9 11 144-154 23-33 (183)
180 COG3882 FkbH Predicted enzyme 24.7 37 0.00079 40.0 1.3 23 135-157 215-237 (574)
181 TIGR01668 YqeG_hyp_ppase HAD s 23.5 65 0.0014 31.4 2.6 28 138-165 21-48 (170)
182 PLN02205 alpha,alpha-trehalose 23.4 91 0.002 38.6 4.4 67 77-155 543-609 (854)
183 TIGR01511 ATPase-IB1_Cu copper 23.2 78 0.0017 36.9 3.6 42 259-303 403-444 (562)
184 TIGR01460 HAD-SF-IIA Haloacid 22.9 39 0.00084 34.6 1.0 23 145-169 1-23 (236)
185 PRK08942 D,D-heptose 1,7-bisph 22.3 44 0.00096 32.3 1.2 13 144-156 5-17 (181)
186 PLN02645 phosphoglycolate phos 21.7 48 0.001 35.4 1.5 35 134-171 21-55 (311)
187 TIGR01670 YrbI-phosphatas 3-de 21.5 1.5E+02 0.0033 28.4 4.6 11 144-154 3-13 (154)
188 PRK12704 phosphodiesterase; Pr 21.4 49 0.0011 38.6 1.5 47 308-370 216-262 (520)
189 smart00495 ChtBD3 Chitin-bindi 20.7 56 0.0012 25.0 1.3 18 201-218 9-26 (41)
No 1
>KOG0323 consensus TFIIF-interacting CTD phosphatases, including NLI-interacting factor [Transcription]
Probab=100.00 E-value=2e-65 Score=570.13 Aligned_cols=507 Identities=28% Similarity=0.366 Sum_probs=415.2
Q ss_pred ccccceEEeeeccCCCCCCchhhhhhhcccceeEeeccCCCC--cHHHHHHHHHhhhcccceEEecCCCceeEEEEeeec
Q 004493 35 KVFDEIRISYFSEASERCPPLAVLHTITASGICFKMESKSSD--NIQLHLLHSSCIRENKTAVMPLGLTEELHLVAMYSR 112 (749)
Q Consensus 35 ~~~~~i~i~~~~~~~erc~pl~vlh~ia~~~~~~~~~~~~~~--~~~l~~lH~~c~~enKtaVv~~~~~~ElhLvam~s~ 112 (749)
.+..++++.+||...|+|+++|++-+++.++++++.+++... +.-+...++.|..+.++|||..+ .++.|+|||.+.
T Consensus 4 ~~~~~~~~~~~~~~~e~~~~~a~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~e~~~v~~~-~~~~~~v~~~~~ 82 (635)
T KOG0323|consen 4 QPGPEERREAFSIVIERSPDLAELTALASGASDGVLESSDDSLVEKDLESFVAICRSKVEGAVVLLG-RDLEKKVALISG 82 (635)
T ss_pred cCCCcchhhhhhhhhccCcchhhhhhhhhhccccccccccccchhhcccchhheecccccchhhccc-cchhhhhccccc
Confidence 345559999999999999999999999999999999988554 66689999999999999999999 899999999999
Q ss_pred CCCCCccEEEEEeeccchhHHHHHHhhcceeeEEEeCcchhhhhccccchHHHHHHHHhhhcCCCChhhhhhhHHHHHHh
Q 004493 113 NNEKQYPCFWAFSVGSGLYNSCLTMLNLRCLGIVFDLDETLIVANTMRSFEDRIEALLRKISTEVDPQRIAGMQAEVKRY 192 (749)
Q Consensus 113 ~~~~~~p~Fw~f~v~~g~y~~~~~lL~~R~L~lVfDLDeTLI~A~T~~sfe~ri~~l~~~~~~~~dP~r~~~~~~evkr~ 192 (749)
.-.. .+|||+|.|..|+|+.|+.+|+.+|...++||++|++.+++|.+|.++|.+...||.+.. ++++
T Consensus 83 ~~~~-~~~C~H~~v~~GlC~~Cg~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-----------L~lv 150 (635)
T KOG0323|consen 83 VSSS-TSCCEHFTVFGGLCASCGKDLESLQGRSFDYLVKGLQLSNEMVAFTKTLTTQFSSLNRKK-----------LHLV 150 (635)
T ss_pred cccc-cCCccceeecccHHHHHHHHHHHhhccchhcccchhhhhhhhhhhhhHHHHHHHHHhhhc-----------ceee
Confidence 8644 699999999999999999999999999999999999999999999999999999997664 7888
Q ss_pred hhhHHHHHHHhhcCccccCCeEEEeecccccCCCCcccccccceeeccccceeeeecCCCCCCceEEEeeCCChhhHHHH
Q 004493 193 QDDKNILKQYAENDQVNENGKVIKVQSEVVPALSDSHQALVRPLIRLQEKNIILTRINPQIRDTSVLVRLRPAWEDLRSY 272 (749)
Q Consensus 193 q~D~~lL~qy~~~d~V~~nG~~~k~q~E~~p~l~dg~~~v~RpvIRl~~~n~~ltRInP~~r~ts~~VKLRPgv~ELr~F 272 (749)
+++...|.+|+..+.+..+++-.+.+.+.+ ..|..+++|+|..+.++|||||||+|+| |
T Consensus 151 ~Dld~tllh~~~~~~l~e~~~~l~~~~~~~------------------~sn~dl~~~~~~~~~~~~~vKlRP~~~e---f 209 (635)
T KOG0323|consen 151 LDLDHTLLHTILKSDLSETEKYLKEEAESV------------------ESNKDLFRFNPLGHDTEYLVKLRPFVHE---F 209 (635)
T ss_pred hhhhhHHHHhhccchhhhhhhhcccccccc------------------cccccceeecccCCCceEEEEeCccHHH---H
Confidence 999999999999999999998887777654 3478899999999999999999999999 9
Q ss_pred HhhhccccEEEEEEeCCcHHHHHHHHHhcCCCCCcccccccCCcEEEccCC---CccchhhhccCCCCCCcEEEEEcCCc
Q 004493 273 LTARGRKRFEVYVCTMAERDYALEMWRLLDPESNLINTKELLDRIVCVKSG---SRKSLFNVFQDGTCHPKMALVIDDRL 349 (749)
Q Consensus 273 L~a~~sk~FELyVyTmGtR~YA~eI~rLLDPdg~LFg~~~l~~RIISresg---~~KsL~~LFp~g~c~~~mvVIIDDR~ 349 (749)
|+ +++++|||||||||+|+||++||++|||+|+||+ +|||||+++ ..++|..+|+ |+++||||||||.
T Consensus 210 L~-~~sklfemhVyTmg~R~YA~~i~~liDP~~~lF~-----dRIisrde~~~~kt~dL~~~~p---~g~smvvIIDDr~ 280 (635)
T KOG0323|consen 210 LK-EANKLFEMHVYTMGTRDYALEIAKLIDPEGKYFG-----DRIISRDESPFFKTLDLVLLFP---CGDSMVVIIDDRS 280 (635)
T ss_pred HH-HHHhhceeEEEeccchHHHHHHHHHhCCCCcccc-----ceEEEecCCCcccccccccCCC---CCCccEEEEeCcc
Confidence 99 9999999999999999999999999999999999 999999766 3456666666 9999999999999
Q ss_pred ccCCCCCCCCeEEecccCCCCCchhhhcccCchHHHHHHHHhhccccchhchhhhhhhccccccccCcCCCCCCCCCccc
Q 004493 350 KVWDDKDQPRVHVVPAFAPYYAPQAEANNAIPVLCVARNIACNVRGGFFKEFDEGLLQRIPEISYEDDVKDIPSPPDVSN 429 (749)
Q Consensus 350 dVW~~~~qn~I~vV~~Y~pf~~~q~E~~~~~p~L~~al~vL~~Vh~~FFk~fDe~l~~ri~ev~~e~~~~~~~~~pDV~n 429 (749)
+||+++++ |+++|.+|.||.. +++.+ ..|.++.+++++|.+++.||+++|+.+..+|.++-|+++-.+.+..+++
T Consensus 281 dVW~~~~~-nLI~i~~y~yF~~-~gd~n-ap~~~~~~~~~~~~~~~~~~k~~~~s~~~~~~~~~~~~~~~~~~~~~~~-- 355 (635)
T KOG0323|consen 281 DVWPDHKR-NLIQIAPYPYFSG-QGDIN-APPPLHVLRNVACSVRGAFFKEFDPSLKSRISEVRYEDDDESNPTSYSV-- 355 (635)
T ss_pred ccccCCCc-ceEEeeeeecccC-ccccc-CCcccccccchhcccccccccccCcccccccccccccccccccCccccc--
Confidence 99999975 5668999987763 33322 2278999999999999999999999999999999999999999999999
Q ss_pred eeeccccccccCCCCCCCCCCCCchHHHHHHhhhhhhhhccccccccccCCCCCCCcccccCCCCCCCccCCCceeeccC
Q 004493 430 YLVSEDDAATANGIKDPLSFDGMADAEVERRLKEAIAASATISSAVANLDPRLAPFQYTMPSSSSTTTLPTSQAAVMPLA 509 (749)
Q Consensus 430 ~l~~e~~~~~~~g~~~~~~~~gm~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ss~~~~~~~~p~~~~~~~~ 509 (749)
-++||..++.+|||.+. +| +
T Consensus 356 ---------~~~~~~~p~~~~~~~~~-------------------------------------~~-~------------- 375 (635)
T KOG0323|consen 356 ---------ELSANPGPLKQDGMDEF-------------------------------------VP-E------------- 375 (635)
T ss_pred ---------ccccccCcccccccccc-------------------------------------cc-c-------------
Confidence 47888888899999887 01 0
Q ss_pred ccCCCCCccccccccccCCCCCCCCCCcccccCCCCCCCCChhhhhhhhhhccCCCcCCCCCCCCCCCCCCCCcccCCcc
Q 004493 510 NMQFPPATSLVKPLGHVGPPEQSLQSSPAREEGEVPESELDPDTRRRLLILQHGMDTRENAPSEAPFPARTQMQVSVPRV 589 (749)
Q Consensus 510 n~~~~~~~~~~~pl~~~~~~~Psl~gsPareegevpeselDpDtrrRLLilqHGqD~R~~~~~epP~p~r~p~q~s~~~v 589 (749)
.
T Consensus 376 -------------------------------------~------------------------------------------ 376 (635)
T KOG0323|consen 376 -------------------------------------E------------------------------------------ 376 (635)
T ss_pred -------------------------------------c------------------------------------------
Confidence 0
Q ss_pred CCCCCceeccccCCcccCCCCCCCCCCCCCcccc-cccCCCCCCCCCCCCCCCCCCCC-ccccccCCcccccchhhhhcc
Q 004493 590 PSRGSWFPVEEEMSPRQLNRAVPKEFPLNSEAMQ-IEKHRPPHPSFFPKIENPSTSDR-PHENQRMPKEALRRDDRLRLN 667 (749)
Q Consensus 590 q~~g~W~~VEeem~p~~lnr~~~~~~p~~s~~~~-~~k~~~~hps~~~~~e~~~~sdr-~~~~qr~p~~~~~~ed~~~~N 667 (749)
+.+++.+.+..+..+.+.+.++...+ ..+..+-|+.||.+.+ ...+. .+.+-|.......+.....-|
T Consensus 377 --------~~~~~~~~s~~~~~~de~~~D~~L~~~~kvl~~vH~~ff~~~~--~~~e~~~~~Dvr~~i~~~~~~v~~~~~ 446 (635)
T KOG0323|consen 377 --------NAPEARSGSYREKKSDESDEDGELANLLKVLKPVHKGFFAKYD--EVEETLESPDVRLLIPELRTKVLKGSQ 446 (635)
T ss_pred --------cchhhcccccccccccccccchhHHHHhhhhcccchhhhhccc--cccccccCCChhhhhhhhhhHHhhccc
Confidence 23333333333333333344444444 3456889999999865 22333 455445544444444444445
Q ss_pred cCCCCCCCCCCCCCCCCCCCCCCCCccccCCcccCCCCCchHHHHHHHhhhCCeeeeecccccccccchhhhhhhhh
Q 004493 668 HTLSDYQSFSGEEIPLSRSSSSSRDVDFESGRDVSSTETPSGVLQDIAMKCGTKVEFRPALVASTELQFSIEVLYAL 744 (749)
Q Consensus 668 ~~~~~~~sf~ge~~~~~~~ss~~r~~~~e~g~~~~~~~~s~gvLqEI~~kC~sKVEfrs~l~~s~dLqFSvEv~~~~ 744 (749)
-..|+-+|+.....+ +......-+-+....+.++.-++|.||.+||++++|+..++.+++++|+.++|.++
T Consensus 447 ~vfSg~~P~~~~~~~------s~~~~~~~~~g~vs~~~~~~~~th~i~~~~gt~k~~~a~~~~~~~Vv~~~wl~~~~ 517 (635)
T KOG0323|consen 447 IVFSGLHPTGSTDES------ADILGVAQQLGAVSAPDVSDKTTHLIAANAGTKKVYKAVVSGSAKVVNAAWLWRSL 517 (635)
T ss_pred eeecccccCcCCcch------hhhhhhhhcccceecccccchhhhHHhhccCcceeeccccccceeEechhHHHHHH
Confidence 556666676554333 11222222233555778999999999999999999999999999999999999886
No 2
>TIGR02250 FCP1_euk FCP1-like phosphatase, phosphatase domain. This domain is related to domains found in the human NLI interacting factor-like phosphatases, and together both are detected by the Pfam model pfam03031.
Probab=99.95 E-value=9e-28 Score=228.62 Aligned_cols=102 Identities=29% Similarity=0.556 Sum_probs=92.8
Q ss_pred CceEEEeeCCChhhHHHHHhhhccccEEEEEEeCCcHHHHHHHHHhcCCCCCcccccccCCcEEEccCC---Cccchhhh
Q 004493 255 DTSVLVRLRPAWEDLRSYLTARGRKRFEVYVCTMAERDYALEMWRLLDPESNLINTKELLDRIVCVKSG---SRKSLFNV 331 (749)
Q Consensus 255 ~ts~~VKLRPgv~ELr~FL~a~~sk~FELyVyTmGtR~YA~eI~rLLDPdg~LFg~~~l~~RIISresg---~~KsL~~L 331 (749)
++.+++|+|||+++ ||+ +++++||++|||+|.+.||.+|++.|||++.+|+ +||++++++ ..|+|+++
T Consensus 52 ~~~~~v~~rPgv~e---fL~-~l~~~yel~I~T~~~~~yA~~vl~~ldp~~~~F~-----~ri~~rd~~~~~~~KdL~~i 122 (156)
T TIGR02250 52 TMWYLTKLRPFLHE---FLK-EASKLYEMHVYTMGTRAYAQAIAKLIDPDGKYFG-----DRIISRDESGSPHTKSLLRL 122 (156)
T ss_pred CeEEEEEECCCHHH---HHH-HHHhhcEEEEEeCCcHHHHHHHHHHhCcCCCeec-----cEEEEeccCCCCccccHHHH
Confidence 57899999999999 998 8899999999999999999999999999999998 899999763 67999999
Q ss_pred ccCCCCCCcEEEEEcCCcccCCCCCCCCeEEecccCCC
Q 004493 332 FQDGTCHPKMALVIDDRLKVWDDKDQPRVHVVPAFAPY 369 (749)
Q Consensus 332 Fp~g~c~~~mvVIIDDR~dVW~~~~qn~I~vV~~Y~pf 369 (749)
++ ++.+++|||||+++||..+.. |.+.|++|.||
T Consensus 123 ~~---~d~~~vvivDd~~~~~~~~~~-N~i~i~~~~~f 156 (156)
T TIGR02250 123 FP---ADESMVVIIDDREDVWPWHKR-NLIQIEPYNYF 156 (156)
T ss_pred cC---CCcccEEEEeCCHHHhhcCcc-CEEEeCCcccC
Confidence 97 789999999999999999854 56579999887
No 3
>PF03031 NIF: NLI interacting factor-like phosphatase; InterPro: IPR004274 The function of this domain is unclear. It is found in proteins of diverse function including phosphatases some of which may be active in active in ternary elongation complexes and a number of NLI interacting factors. In the phospatases this domain is often present N-terminal to the BRCT domain (IPR001357 from INTERPRO).; GO: 0005515 protein binding; PDB: 3L0Y_A 2GHQ_A 3PGL_A 3L0C_B 1TA0_A 2GHT_A 3L0B_B 1T9Z_A 3QLE_A 2Q5E_E ....
Probab=99.80 E-value=4.1e-20 Score=171.65 Aligned_cols=100 Identities=25% Similarity=0.363 Sum_probs=74.7
Q ss_pred CceEEEeeCCChhhHHHHHhhhccccEEEEEEeCCcHHHHHHHHHhcCCCCCcccccccCCcEEEccCC------Cccch
Q 004493 255 DTSVLVRLRPAWEDLRSYLTARGRKRFEVYVCTMAERDYALEMWRLLDPESNLINTKELLDRIVCVKSG------SRKSL 328 (749)
Q Consensus 255 ~ts~~VKLRPgv~ELr~FL~a~~sk~FELyVyTmGtR~YA~eI~rLLDPdg~LFg~~~l~~RIISresg------~~KsL 328 (749)
.+.+++++|||+++ ||+ .+++.|||+|||+|++.||..|++.|||++.+|. +++++++. ..|+|
T Consensus 30 ~~~~~v~~RP~l~~---FL~-~l~~~~ev~i~T~~~~~ya~~v~~~ldp~~~~~~------~~~~r~~~~~~~~~~~KdL 99 (159)
T PF03031_consen 30 RGGYYVKLRPGLDE---FLE-ELSKHYEVVIWTSASEEYAEPVLDALDPNGKLFS------RRLYRDDCTFDKGSYIKDL 99 (159)
T ss_dssp EEEEEEEE-TTHHH---HHH-HHHHHCEEEEE-SS-HHHHHHHHHHHTTTTSSEE------EEEEGGGSEEETTEEE--G
T ss_pred ccceeEeeCchHHH---HHH-HHHHhceEEEEEeehhhhhhHHHHhhhhhccccc------cccccccccccccccccch
Confidence 46789999999999 998 8899999999999999999999999999999997 44455432 36999
Q ss_pred hhhccCCCCCCcEEEEEcCCcccCCCCCCCCeEEecccCCC
Q 004493 329 FNVFQDGTCHPKMALVIDDRLKVWDDKDQPRVHVVPAFAPY 369 (749)
Q Consensus 329 ~~LFp~g~c~~~mvVIIDDR~dVW~~~~qn~I~vV~~Y~pf 369 (749)
..+. .+.+.+|||||++.+|..+ +.|++.|++|...
T Consensus 100 ~~l~----~~~~~vvivDD~~~~~~~~-~~N~i~v~~f~~~ 135 (159)
T PF03031_consen 100 SKLG----RDLDNVVIVDDSPRKWALQ-PDNGIPVPPFFGD 135 (159)
T ss_dssp GGSS----S-GGGEEEEES-GGGGTTS-GGGEEE----SSC
T ss_pred HHHh----hccccEEEEeCCHHHeecc-CCceEEeccccCC
Confidence 9883 3578999999999999887 4567788888664
No 4
>TIGR02251 HIF-SF_euk Dullard-like phosphatase domain. This domain is related to domains found in FCP1-like phosphatases (TIGR02250), and together both are detected by the Pfam model pfam03031.
Probab=99.80 E-value=2.7e-19 Score=170.35 Aligned_cols=117 Identities=21% Similarity=0.213 Sum_probs=90.2
Q ss_pred CceEEEeeCCChhhHHHHHhhhccccEEEEEEeCCcHHHHHHHHHhcCCCCCcccccccCCcEEEccCC------Cccch
Q 004493 255 DTSVLVRLRPAWEDLRSYLTARGRKRFEVYVCTMAERDYALEMWRLLDPESNLINTKELLDRIVCVKSG------SRKSL 328 (749)
Q Consensus 255 ~ts~~VKLRPgv~ELr~FL~a~~sk~FELyVyTmGtR~YA~eI~rLLDPdg~LFg~~~l~~RIISresg------~~KsL 328 (749)
...+||++|||+.| ||+ +++++||++|||+|.+.||..|++.|||.+.+|. ++++++++ ..|+|
T Consensus 36 ~~~~~v~~RPgl~e---FL~-~l~~~yei~I~Ts~~~~yA~~il~~ldp~~~~f~------~~l~r~~~~~~~~~~~K~L 105 (162)
T TIGR02251 36 IIPVYVFKRPHVDE---FLE-RVSKWYELVIFTASLEEYADPVLDILDRGGKVIS------RRLYRESCVFTNGKYVKDL 105 (162)
T ss_pred EEEEEEEECCCHHH---HHH-HHHhcCEEEEEcCCcHHHHHHHHHHHCcCCCEEe------EEEEccccEEeCCCEEeEc
Confidence 35799999999999 888 8889999999999999999999999999998888 33444332 56888
Q ss_pred hhhccCCCCCCcEEEEEcCCcccCCCCCCCCeEEecccCCCCCchhhhcccCchHHHHHHHHhhcc
Q 004493 329 FNVFQDGTCHPKMALVIDDRLKVWDDKDQPRVHVVPAFAPYYAPQAEANNAIPVLCVARNIACNVR 394 (749)
Q Consensus 329 ~~LFp~g~c~~~mvVIIDDR~dVW~~~~qn~I~vV~~Y~pf~~~q~E~~~~~p~L~~al~vL~~Vh 394 (749)
..+- .+.+.+|||||++..|..+.+|.| .+.+|.. ... +-.|..++.+|+.++
T Consensus 106 ~~l~----~~~~~vIiVDD~~~~~~~~~~NgI-~i~~f~~--~~~------D~~L~~l~~~L~~l~ 158 (162)
T TIGR02251 106 SLVG----KDLSKVIIIDNSPYSYSLQPDNAI-PIKSWFG--DPN------DTELLNLIPFLEGLR 158 (162)
T ss_pred hhcC----CChhhEEEEeCChhhhccCccCEe-ecCCCCC--CCC------HHHHHHHHHHHHHHh
Confidence 8754 467899999999999998866665 4777753 111 113555666666653
No 5
>KOG1605 consensus TFIIF-interacting CTD phosphatase, including NLI-interacting factor (involved in RNA polymerase II regulation) [Transcription]
Probab=99.61 E-value=1.4e-16 Score=164.54 Aligned_cols=130 Identities=20% Similarity=0.268 Sum_probs=104.5
Q ss_pred ceEEEeeCCChhhHHHHHhhhccccEEEEEEeCCcHHHHHHHHHhcCCCCCcccccccCCcEEEccCCCccchhhhccCC
Q 004493 256 TSVLVRLRPAWEDLRSYLTARGRKRFEVYVCTMAERDYALEMWRLLDPESNLINTKELLDRIVCVKSGSRKSLFNVFQDG 335 (749)
Q Consensus 256 ts~~VKLRPgv~ELr~FL~a~~sk~FELyVyTmGtR~YA~eI~rLLDPdg~LFg~~~l~~RIISresg~~KsL~~LFp~g 335 (749)
..+||+.||++.+ ||. +++++||+.|||++...||..++.+|||++++|..+.+++.++..+.++.|+|..+-
T Consensus 126 ~~~yV~kRP~vde---FL~-~~s~~~e~v~FTAs~~~Ya~~v~D~LD~~~~i~~~RlyR~~C~~~~g~yvKdls~~~--- 198 (262)
T KOG1605|consen 126 HQVYVRKRPHVDE---FLS-RVSKWYELVLFTASLEVYADPLLDILDPDRKIISHRLYRDSCTLKDGNYVKDLSVLG--- 198 (262)
T ss_pred eEEEEEcCCCHHH---HHH-HhHHHHHHHHHHhhhHHHHHHHHHHccCCCCeeeeeecccceEeECCcEEEEcceec---
Confidence 4689999999999 999 999999999999999999999999999999999966655556666777899997544
Q ss_pred CCCCcEEEEEcCCcccCCCCCCCCeEEecccCCCCCchhhhcccCchHHHHHHHHhhcccc
Q 004493 336 TCHPKMALVIDDRLKVWDDKDQPRVHVVPAFAPYYAPQAEANNAIPVLCVARNIACNVRGG 396 (749)
Q Consensus 336 ~c~~~mvVIIDDR~dVW~~~~qn~I~vV~~Y~pf~~~q~E~~~~~p~L~~al~vL~~Vh~~ 396 (749)
++.+-++||||++..+..+.+|.|.+.+||.- ....|..+..|+|.....+ .+|+..
T Consensus 199 -~dL~~viIiDNsP~sy~~~p~NgIpI~sw~~d--~~D~eLL~LlpfLe~L~~~-~Dvr~~ 255 (262)
T KOG1605|consen 199 -RDLSKVIIVDNSPQSYRLQPENGIPIKSWFDD--PTDTELLKLLPFLEALAFV-DDVRPI 255 (262)
T ss_pred -cCcccEEEEcCChHHhccCccCCCcccccccC--CChHHHHHHHHHHHHhccc-ccHHHH
Confidence 47889999999999999999999986555422 2245566667777665555 555543
No 6
>smart00577 CPDc catalytic domain of ctd-like phosphatases.
Probab=99.60 E-value=5.2e-15 Score=138.21 Aligned_cols=102 Identities=24% Similarity=0.281 Sum_probs=80.8
Q ss_pred CCceEEEeeCCChhhHHHHHhhhccccEEEEEEeCCcHHHHHHHHHhcCCCCCcccccccCCcEEEccCC------Cccc
Q 004493 254 RDTSVLVRLRPAWEDLRSYLTARGRKRFEVYVCTMAERDYALEMWRLLDPESNLINTKELLDRIVCVKSG------SRKS 327 (749)
Q Consensus 254 r~ts~~VKLRPgv~ELr~FL~a~~sk~FELyVyTmGtR~YA~eI~rLLDPdg~LFg~~~l~~RIISresg------~~Ks 327 (749)
....+++++|||+.| ||+ .+++.|++.|+|++.+.||+.+++.||+...+| ++|+++++. ..|.
T Consensus 38 ~~~~~~v~l~pG~~e---~L~-~L~~~~~l~I~Ts~~~~~~~~il~~l~~~~~~f------~~i~~~~d~~~~KP~~~k~ 107 (148)
T smart00577 38 HPHGVYVKKRPGVDE---FLK-RASELFELVVFTAGLRMYADPVLDLLDPKKYFG------YRRLFRDECVFVKGKYVKD 107 (148)
T ss_pred ceEEEEEEECCCHHH---HHH-HHHhccEEEEEeCCcHHHHHHHHHHhCcCCCEe------eeEEECccccccCCeEeec
Confidence 345789999999999 555 455679999999999999999999999976444 588888554 3456
Q ss_pred hhhhccCCCCCCcEEEEEcCCcccCCCCCCCCeEEecccCCCC
Q 004493 328 LFNVFQDGTCHPKMALVIDDRLKVWDDKDQPRVHVVPAFAPYY 370 (749)
Q Consensus 328 L~~LFp~g~c~~~mvVIIDDR~dVW~~~~qn~I~vV~~Y~pf~ 370 (749)
|+.+ + ++++.+++|||+...|.....| .+.|++|..+.
T Consensus 108 l~~l-~---~~p~~~i~i~Ds~~~~~aa~~n-gI~i~~f~~~~ 145 (148)
T smart00577 108 LSLL-G---RDLSNVIIIDDSPDSWPFHPEN-LIPIKPWFGDP 145 (148)
T ss_pred HHHc-C---CChhcEEEEECCHHHhhcCccC-EEEecCcCCCC
Confidence 6654 3 5789999999999999987545 55689987754
No 7
>COG5190 FCP1 TFIIF-interacting CTD phosphatases, including NLI-interacting factor [Transcription]
Probab=99.46 E-value=3.4e-14 Score=153.68 Aligned_cols=88 Identities=34% Similarity=0.567 Sum_probs=82.6
Q ss_pred CCCceEEEeeCCChhhHHHHHhhhccccEEEEEEeCCcHHHHHHHHHhcCCCCCcccccccCCcEEEccCC---Cccchh
Q 004493 253 IRDTSVLVRLRPAWEDLRSYLTARGRKRFEVYVCTMAERDYALEMWRLLDPESNLINTKELLDRIVCVKSG---SRKSLF 329 (749)
Q Consensus 253 ~r~ts~~VKLRPgv~ELr~FL~a~~sk~FELyVyTmGtR~YA~eI~rLLDPdg~LFg~~~l~~RIISresg---~~KsL~ 329 (749)
...|+|++|.||.... |+. +.+++||+++||||++.||.++++++||.|++|+ +|+.+++.. ..|++.
T Consensus 68 ~~~~~~~~k~~~~l~~---~~~-~i~~~~e~~~~~~~~~~~~~~~~~i~d~~g~~~~-----d~~~~~~~~~~~~~~s~~ 138 (390)
T COG5190 68 QEKCAYYVKARPKLFP---FLT-KISPLYELHIYTMGTRAYAERIAKIIDPTGKLFN-----DRILSRDESGSLSQKSLS 138 (390)
T ss_pred cccccceeeecccccc---hhh-hhchhcceeeEeeccccchhhhhhcccccccccc-----cccccccccccchhhhhh
Confidence 4578999999999988 998 9999999999999999999999999999999999 999999643 679999
Q ss_pred hhccCCCCCCcEEEEEcCCcccC
Q 004493 330 NVFQDGTCHPKMALVIDDRLKVW 352 (749)
Q Consensus 330 ~LFp~g~c~~~mvVIIDDR~dVW 352 (749)
++|| ++.+|++|+||+.++|
T Consensus 139 ~l~p---~~~n~~vi~~d~~~~~ 158 (390)
T COG5190 139 RLFP---KDQNMVVIIDDRGDVW 158 (390)
T ss_pred hcCc---cccccccccccccccC
Confidence 9999 8899999999999999
No 8
>TIGR02245 HAD_IIID1 HAD-superfamily subfamily IIID hydrolase, TIGR02245. This family of sequences appears to belong to the Haloacid Dehalogenase (HAD) superfamily of enzymes by virtue of the presence of three catalytic domains, in this case: LLVLD(ILV)D(YH)T, I(VMG)IWS, and (DN)(VC)K(PA)Lx{15-17}T(IL)(MH)(FV)DD(IL)(GRS)(RK)N. Since this family has no large "cap" domain between motifs 1 and 2 or between 2 and 3, it is formally a "class III" HAD.
Probab=99.35 E-value=2.1e-12 Score=128.70 Aligned_cols=104 Identities=16% Similarity=0.190 Sum_probs=75.9
Q ss_pred EEeeCCChhhHHHHHhhhccccEEEEEEeCCcHHHHHHHHHhcCCCCC-cccccccCCcE--EE---ccCC--Cccchhh
Q 004493 259 LVRLRPAWEDLRSYLTARGRKRFEVYVCTMAERDYALEMWRLLDPESN-LINTKELLDRI--VC---VKSG--SRKSLFN 330 (749)
Q Consensus 259 ~VKLRPgv~ELr~FL~a~~sk~FELyVyTmGtR~YA~eI~rLLDPdg~-LFg~~~l~~RI--IS---resg--~~KsL~~ 330 (749)
|+..|||+++ ||+ .+++.|||.|||.+...||+.+++.|++.+. .+....+.++. ++ ...| ..|+|..
T Consensus 43 ~~~kRP~l~e---FL~-~~~~~feIvVwTAa~~~ya~~~l~~l~~~~~~~~~i~~~ld~~~~~~~~~~~~g~~~vKdL~~ 118 (195)
T TIGR02245 43 EELMRPYLHE---FLT-SAYEDYDIVIWSATSMKWIEIKMTELGVLTNPNYKITFLLDSTAMITVHTPRRGKFDVKPLGV 118 (195)
T ss_pred eEEeCCCHHH---HHH-HHHhCCEEEEEecCCHHHHHHHHHHhcccCCccceEEEEeccccceeeEeeccCcEEEeecHH
Confidence 6789999999 999 8999999999999999999999999987542 12222222332 11 1223 4799998
Q ss_pred hccCCC--CCCcEEEEEcCCcccCCCCCCCCeEEecccC
Q 004493 331 VFQDGT--CHPKMALVIDDRLKVWDDKDQPRVHVVPAFA 367 (749)
Q Consensus 331 LFp~g~--c~~~mvVIIDDR~dVW~~~~qn~I~vV~~Y~ 367 (749)
+...-+ .+.+-+|||||.+.....+.+|.|. |++|.
T Consensus 119 lw~~l~~~~~~~ntiiVDd~p~~~~~~P~N~i~-I~~f~ 156 (195)
T TIGR02245 119 IWALLPEFYSMKNTIMFDDLRRNFLMNPQNGLK-IRPFK 156 (195)
T ss_pred hhhhcccCCCcccEEEEeCCHHHHhcCCCCccc-cCCcc
Confidence 743211 2568899999999999988777775 66663
No 9
>COG5190 FCP1 TFIIF-interacting CTD phosphatases, including NLI-interacting factor [Transcription]
Probab=98.05 E-value=5.9e-06 Score=90.63 Aligned_cols=102 Identities=16% Similarity=0.229 Sum_probs=85.3
Q ss_pred CceEEEeeCCChhhHHHHHhhhccccEEEEEEeCCcHHHHHHHHHhcCCCCCcccccccCCcEEEccCCCccchhhhccC
Q 004493 255 DTSVLVRLRPAWEDLRSYLTARGRKRFEVYVCTMAERDYALEMWRLLDPESNLINTKELLDRIVCVKSGSRKSLFNVFQD 334 (749)
Q Consensus 255 ~ts~~VKLRPgv~ELr~FL~a~~sk~FELyVyTmGtR~YA~eI~rLLDPdg~LFg~~~l~~RIISresg~~KsL~~LFp~ 334 (749)
...+||..||++.+ ||. ++++.|++|++|...+.||+.|++.||+.+ .|+...+..+++..+....|+|..+..
T Consensus 246 ~~~~~v~kRp~l~~---fl~-~ls~~~~l~~ft~s~~~y~~~v~d~l~~~k-~~~~~lfr~sc~~~~G~~ikDis~i~r- 319 (390)
T COG5190 246 QHLVYVSKRPELDY---FLG-KLSKIHELVYFTASVKRYADPVLDILDSDK-VFSHRLFRESCVSYLGVYIKDISKIGR- 319 (390)
T ss_pred eeEEEEcCChHHHH---HHh-hhhhhEEEEEEecchhhhcchHHHhccccc-eeehhhhcccceeccCchhhhHHhhcc-
Confidence 36799999999998 887 889999999999999999999999999999 777555556666655557899998874
Q ss_pred CCCCCcEEEEEcCCcccCCCCCCCCeEEeccc
Q 004493 335 GTCHPKMALVIDDRLKVWDDKDQPRVHVVPAF 366 (749)
Q Consensus 335 g~c~~~mvVIIDDR~dVW~~~~qn~I~vV~~Y 366 (749)
+-.-++|||+++--|..+.++.|. ++.+
T Consensus 320 ---~l~~viiId~~p~SY~~~p~~~i~-i~~W 347 (390)
T COG5190 320 ---SLDKVIIIDNSPASYEFHPENAIP-IEKW 347 (390)
T ss_pred ---CCCceEEeeCChhhhhhCccceec-cCcc
Confidence 568999999999999888766664 5554
No 10
>TIGR01489 DKMTPPase-SF 2,3-diketo-5-methylthio-1-phosphopentane phosphatase. Note that SP|P53981 from S. cerevisiae, a member of this family, is annotated as a "probable membrane protein" due to a predicted transmembrane helix. The region in question contains the second of the three conserved HAD superfamily catalytic motifs and thus, considering the fold of the HAD catalytic domain, is unlikely to be a transmembrane region in fact.
Probab=97.95 E-value=8.3e-05 Score=69.60 Aligned_cols=39 Identities=5% Similarity=0.224 Sum_probs=33.5
Q ss_pred EeeCCChhhHHHHHhhhccccEEEEEEeCCcHHHHHHHHHhc
Q 004493 260 VRLRPAWEDLRSYLTARGRKRFEVYVCTMAERDYALEMWRLL 301 (749)
Q Consensus 260 VKLRPgv~ELr~FL~a~~sk~FELyVyTmGtR~YA~eI~rLL 301 (749)
++++|++.+++.+|+ .+.+.++|.|+|.+.++..+++.+
T Consensus 71 ~~l~~g~~~ll~~l~---~~g~~~~i~S~~~~~~~~~~l~~~ 109 (188)
T TIGR01489 71 APIDPGFKEFIAFIK---EHGIDFIVISDGNDFFIDPVLEGI 109 (188)
T ss_pred CCCCccHHHHHHHHH---HcCCcEEEEeCCcHHHHHHHHHHc
Confidence 478899999888886 456999999999999999998874
No 11
>TIGR02253 CTE7 HAD superfamily (subfamily IA) hydrolase, TIGR02253. This family is a member of the haloacid dehalogenase (HAD) superfamily of hydrolases which are characterized by three conserved sequence motifs. By virtue of an alpha helical domain in-between the first and second conserved motif, this family is a member of subfamily IA (TIGR01549).
Probab=97.84 E-value=1.2e-05 Score=77.77 Aligned_cols=81 Identities=17% Similarity=0.276 Sum_probs=55.5
Q ss_pred EEeeCCChhhHHHHHhhhccccEEEEEEeCCcHHHHHHHHHhcCCCCCcccccccCCcEEEccCC-Ccc----chhhhcc
Q 004493 259 LVRLRPAWEDLRSYLTARGRKRFEVYVCTMAERDYALEMWRLLDPESNLINTKELLDRIVCVKSG-SRK----SLFNVFQ 333 (749)
Q Consensus 259 ~VKLRPgv~ELr~FL~a~~sk~FELyVyTmGtR~YA~eI~rLLDPdg~LFg~~~l~~RIISresg-~~K----sL~~LFp 333 (749)
++++.|++.+++.+|+ .+.+-+.|.|++.+.++...++.+ +...+++.|++.++. ..| .+..++.
T Consensus 92 ~~~~~~g~~~~L~~L~---~~g~~~~i~Tn~~~~~~~~~l~~~-------~l~~~f~~i~~~~~~~~~KP~~~~~~~~~~ 161 (221)
T TIGR02253 92 YLRVYPGVRDTLMELR---ESGYRLGIITDGLPVKQWEKLERL-------GVRDFFDAVITSEEEGVEKPHPKIFYAALK 161 (221)
T ss_pred hCCCCCCHHHHHHHHH---HCCCEEEEEeCCchHHHHHHHHhC-------ChHHhccEEEEeccCCCCCCCHHHHHHHHH
Confidence 5688999999777776 346889999999999999888774 444556678876432 222 1222222
Q ss_pred CCCCCCcEEEEEcCCc
Q 004493 334 DGTCHPKMALVIDDRL 349 (749)
Q Consensus 334 ~g~c~~~mvVIIDDR~ 349 (749)
.....++-+|+|+|+.
T Consensus 162 ~~~~~~~~~~~igDs~ 177 (221)
T TIGR02253 162 RLGVKPEEAVMVGDRL 177 (221)
T ss_pred HcCCChhhEEEECCCh
Confidence 1124567899999985
No 12
>PF13419 HAD_2: Haloacid dehalogenase-like hydrolase; PDB: 2FI1_A 2I6X_A 3SD7_A 4F71_A 4DFD_B 4F72_B 4DCC_A 3DDH_A 3KZX_A 2B0C_A ....
Probab=97.81 E-value=2.7e-05 Score=70.21 Aligned_cols=81 Identities=17% Similarity=0.229 Sum_probs=57.8
Q ss_pred EEeeCCChhhHHHHHhhhccccEEEEEEeCCcHHHHHHHHHhcCCCCCcccccccCCcEEEccCC-Ccc----chhhhcc
Q 004493 259 LVRLRPAWEDLRSYLTARGRKRFEVYVCTMAERDYALEMWRLLDPESNLINTKELLDRIVCVKSG-SRK----SLFNVFQ 333 (749)
Q Consensus 259 ~VKLRPgv~ELr~FL~a~~sk~FELyVyTmGtR~YA~eI~rLLDPdg~LFg~~~l~~RIISresg-~~K----sL~~LFp 333 (749)
..++.|++.+++..|+ ++.|.++|+|++.+.+...+++-+ +...+++.|++.++. ..| -+..+..
T Consensus 75 ~~~~~~~~~~~L~~l~---~~~~~~~i~Sn~~~~~~~~~l~~~-------~~~~~f~~i~~~~~~~~~Kp~~~~~~~~~~ 144 (176)
T PF13419_consen 75 KLQPYPGVRELLERLK---AKGIPLVIVSNGSRERIERVLERL-------GLDDYFDEIISSDDVGSRKPDPDAYRRALE 144 (176)
T ss_dssp GEEESTTHHHHHHHHH---HTTSEEEEEESSEHHHHHHHHHHT-------THGGGCSEEEEGGGSSSSTTSHHHHHHHHH
T ss_pred ccchhhhhhhhhhhcc---cccceeEEeecCCccccccccccc-------ccccccccccccchhhhhhhHHHHHHHHHH
Confidence 5678899999666554 478999999999999999999985 444556788887532 222 2333332
Q ss_pred CCCCCCcEEEEEcCCc
Q 004493 334 DGTCHPKMALVIDDRL 349 (749)
Q Consensus 334 ~g~c~~~mvVIIDDR~ 349 (749)
...+.++-++.|||+.
T Consensus 145 ~~~~~p~~~~~vgD~~ 160 (176)
T PF13419_consen 145 KLGIPPEEILFVGDSP 160 (176)
T ss_dssp HHTSSGGGEEEEESSH
T ss_pred HcCCCcceEEEEeCCH
Confidence 2226778899999985
No 13
>KOG2832 consensus TFIIF-interacting CTD phosphatase, including NLI-interacting factor (involved in RNA polymerase II regulation) [Transcription]
Probab=97.79 E-value=5.4e-05 Score=82.57 Aligned_cols=134 Identities=16% Similarity=0.190 Sum_probs=92.1
Q ss_pred cCCC-CCCceEEEeeCCChhhHHHHHhhhccccEEEEEEeCCcHHHHHHHHHhcCCCCCcccccccCCcEEEccCCCccc
Q 004493 249 INPQ-IRDTSVLVRLRPAWEDLRSYLTARGRKRFEVYVCTMAERDYALEMWRLLDPESNLINTKELLDRIVCVKSGSRKS 327 (749)
Q Consensus 249 InP~-~r~ts~~VKLRPgv~ELr~FL~a~~sk~FELyVyTmGtR~YA~eI~rLLDPdg~LFg~~~l~~RIISresg~~Ks 327 (749)
++|+ ...|.+-+|.|||+.- ||. .+++.|||.|||--.-.||.-++.-|||. .+|.++.+.++-...++-..|+
T Consensus 201 Vhpdws~~tGwRf~kRPgvD~---FL~-~~a~~yEIVi~sse~gmt~~pl~d~lDP~-g~IsYkLfr~~t~y~~G~HvKd 275 (393)
T KOG2832|consen 201 VHPDWSYKTGWRFKKRPGVDY---FLG-HLAKYYEIVVYSSEQGMTVFPLLDALDPK-GYISYKLFRGATKYEEGHHVKD 275 (393)
T ss_pred eccchhhhcCceeccCchHHH---HHH-hhcccceEEEEecCCccchhhhHhhcCCc-ceEEEEEecCcccccCccchhh
Confidence 3444 3457788999999998 998 99999999999999999999999999999 5577333333333333337799
Q ss_pred hhhhccCCCCCCcEEEEEcCCcccCCCCCCCCeEEecccCCCCCchh-hhcccCchHHH-HHHHHhhcc
Q 004493 328 LFNVFQDGTCHPKMALVIDDRLKVWDDKDQPRVHVVPAFAPYYAPQA-EANNAIPVLCV-ARNIACNVR 394 (749)
Q Consensus 328 L~~LFp~g~c~~~mvVIIDDR~dVW~~~~qn~I~vV~~Y~pf~~~q~-E~~~~~p~L~~-al~vL~~Vh 394 (749)
|+.|-. +.+.|||||=......-+..| -+.++++.= ..++ ..-+..++|.. +.+-.++||
T Consensus 276 ls~LNR----dl~kVivVd~d~~~~~l~P~N-~l~l~~W~G--n~dDt~L~dL~~FL~~ia~~~~eDvR 337 (393)
T KOG2832|consen 276 LSKLNR----DLQKVIVVDFDANSYKLQPEN-MLPLEPWSG--NDDDTSLFDLLAFLEYIAQQQVEDVR 337 (393)
T ss_pred hhhhcc----ccceeEEEEccccccccCccc-ccccCcCCC--CcccchhhhHHHHHHHHHHccHHHHH
Confidence 998764 789999999887777776545 445666531 2222 12223344432 344555666
No 14
>PLN02770 haloacid dehalogenase-like hydrolase family protein
Probab=97.76 E-value=0.00015 Score=73.20 Aligned_cols=80 Identities=13% Similarity=0.201 Sum_probs=56.9
Q ss_pred EeeCCChhhHHHHHhhhccccEEEEEEeCCcHHHHHHHHHhcCCCCCcccccccCCcEEEccCC-Cccc----hhhhccC
Q 004493 260 VRLRPAWEDLRSYLTARGRKRFEVYVCTMAERDYALEMWRLLDPESNLINTKELLDRIVCVKSG-SRKS----LFNVFQD 334 (749)
Q Consensus 260 VKLRPgv~ELr~FL~a~~sk~FELyVyTmGtR~YA~eI~rLLDPdg~LFg~~~l~~RIISresg-~~Ks----L~~LFp~ 334 (749)
+++.||+.+++.+|+ ++-|.+.|.|++.+.++..+++. ++...+|+.|+|.++. ..|. +......
T Consensus 107 ~~l~pgv~e~L~~L~---~~g~~l~I~Tn~~~~~~~~~l~~-------~gl~~~Fd~iv~~~~~~~~KP~p~~~~~a~~~ 176 (248)
T PLN02770 107 LKPLNGLYKLKKWIE---DRGLKRAAVTNAPRENAELMISL-------LGLSDFFQAVIIGSECEHAKPHPDPYLKALEV 176 (248)
T ss_pred CCcCccHHHHHHHHH---HcCCeEEEEeCCCHHHHHHHHHH-------cCChhhCcEEEecCcCCCCCCChHHHHHHHHH
Confidence 467799999888887 56799999999999999999998 4445566788887542 1111 1211111
Q ss_pred CCCCCcEEEEEcCCc
Q 004493 335 GTCHPKMALVIDDRL 349 (749)
Q Consensus 335 g~c~~~mvVIIDDR~ 349 (749)
..+.++-+++|+|+.
T Consensus 177 ~~~~~~~~l~vgDs~ 191 (248)
T PLN02770 177 LKVSKDHTFVFEDSV 191 (248)
T ss_pred hCCChhHEEEEcCCH
Confidence 125667899999986
No 15
>TIGR01685 MDP-1 magnesium-dependent phosphatase-1. This model represents two closely related clades of sequences from eukaryotes and archaea. The mouse enzyme has been characterized as a phosphatase and has been positively identified as a member of the haloacid dehalogenase (HAD) superfamily by site-directed mutagenesis of the active site residues.
Probab=97.69 E-value=0.00012 Score=72.31 Aligned_cols=101 Identities=17% Similarity=0.126 Sum_probs=68.9
Q ss_pred EEeeCCChhhHHHHHhhhccccEEEEEEeCC-cHHHHHHHHHhcCC--CCCcccccccCCcEEEccCC-CccchhhhccC
Q 004493 259 LVRLRPAWEDLRSYLTARGRKRFEVYVCTMA-ERDYALEMWRLLDP--ESNLINTKELLDRIVCVKSG-SRKSLFNVFQD 334 (749)
Q Consensus 259 ~VKLRPgv~ELr~FL~a~~sk~FELyVyTmG-tR~YA~eI~rLLDP--dg~LFg~~~l~~RIISresg-~~KsL~~LFp~ 334 (749)
-++++|++.+++.+|+ ++-+-+.|.|++ .+.|+..+++.++= .|+.+....+|+.|++-++. ..|....++..
T Consensus 43 ~~~l~pGv~elL~~Lk---~~G~~l~I~Sn~~~~~~~~~~L~~~~l~~~~~~~~~~~~Fd~iv~~~~~~~~kp~~~i~~~ 119 (174)
T TIGR01685 43 EVTLIKEVRDVLQTLK---DAGTYLATASWNDVPEWAYEILGTFEITYAGKTVPMHSLFDDRIEIYKPNKAKQLEMILQK 119 (174)
T ss_pred EEEEcccHHHHHHHHH---HCCCEEEEEeCCCChHHHHHHHHhCCcCCCCCcccHHHhceeeeeccCCchHHHHHHHHHH
Confidence 4578899999888887 577999999988 99999999999773 34444444566777776443 33433222221
Q ss_pred C------CCCCcEEEEEcCCcccCCCCCCCCeEE
Q 004493 335 G------TCHPKMALVIDDRLKVWDDKDQPRVHV 362 (749)
Q Consensus 335 g------~c~~~mvVIIDDR~dVW~~~~qn~I~v 362 (749)
. ...++-+++|||+..-........+.+
T Consensus 120 ~~~~~~~gl~p~e~l~VgDs~~di~aA~~aGi~~ 153 (174)
T TIGR01685 120 VNKVDPSVLKPAQILFFDDRTDNVREVWGYGVTS 153 (174)
T ss_pred hhhcccCCCCHHHeEEEcChhHhHHHHHHhCCEE
Confidence 0 146789999999987554444455554
No 16
>TIGR01449 PGP_bact 2-phosphoglycolate phosphatase, prokaryotic. This enzyme is a member of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolase enzymes (pfam00702).
Probab=97.65 E-value=0.00041 Score=66.72 Aligned_cols=82 Identities=18% Similarity=0.155 Sum_probs=57.2
Q ss_pred EEeeCCChhhHHHHHhhhccccEEEEEEeCCcHHHHHHHHHhcCCCCCcccccccCCcEEEccCC-Ccc----chhhhcc
Q 004493 259 LVRLRPAWEDLRSYLTARGRKRFEVYVCTMAERDYALEMWRLLDPESNLINTKELLDRIVCVKSG-SRK----SLFNVFQ 333 (749)
Q Consensus 259 ~VKLRPgv~ELr~FL~a~~sk~FELyVyTmGtR~YA~eI~rLLDPdg~LFg~~~l~~RIISresg-~~K----sL~~LFp 333 (749)
.+++.|++.+++..|+ .+.|.+.|+|++.+.++..+++.+ +...+++.++|.++. ..| .+..++.
T Consensus 83 ~~~~~~g~~~~L~~l~---~~g~~~~i~S~~~~~~~~~~l~~~-------~l~~~f~~~~~~~~~~~~Kp~p~~~~~~~~ 152 (213)
T TIGR01449 83 LTSVFPGVEATLGALR---AKGLRLGLVTNKPTPLARPLLELL-------GLAKYFSVLIGGDSLAQRKPHPDPLLLAAE 152 (213)
T ss_pred cCccCCCHHHHHHHHH---HCCCeEEEEeCCCHHHHHHHHHHc-------CcHhhCcEEEecCCCCCCCCChHHHHHHHH
Confidence 4678999999777776 456999999999999999999984 333455678877542 122 2333332
Q ss_pred CCCCCCcEEEEEcCCcc
Q 004493 334 DGTCHPKMALVIDDRLK 350 (749)
Q Consensus 334 ~g~c~~~mvVIIDDR~d 350 (749)
.....++-+++|+|+..
T Consensus 153 ~~~~~~~~~~~igDs~~ 169 (213)
T TIGR01449 153 RLGVAPQQMVYVGDSRV 169 (213)
T ss_pred HcCCChhHeEEeCCCHH
Confidence 22245677999999854
No 17
>PRK13288 pyrophosphatase PpaX; Provisional
Probab=97.61 E-value=0.00045 Score=67.31 Aligned_cols=81 Identities=15% Similarity=0.195 Sum_probs=57.1
Q ss_pred EeeCCChhhHHHHHhhhccccEEEEEEeCCcHHHHHHHHHhcCCCCCcccccccCCcEEEccCC-----CccchhhhccC
Q 004493 260 VRLRPAWEDLRSYLTARGRKRFEVYVCTMAERDYALEMWRLLDPESNLINTKELLDRIVCVKSG-----SRKSLFNVFQD 334 (749)
Q Consensus 260 VKLRPgv~ELr~FL~a~~sk~FELyVyTmGtR~YA~eI~rLLDPdg~LFg~~~l~~RIISresg-----~~KsL~~LFp~ 334 (749)
+++.||+.+++.+|+ ++.+.+.|.|++.+.++..+++.+ +...+|+.|++.++. +...+..+...
T Consensus 81 ~~~~~g~~~~l~~L~---~~g~~~~i~S~~~~~~~~~~l~~~-------gl~~~f~~i~~~~~~~~~Kp~p~~~~~~~~~ 150 (214)
T PRK13288 81 VTEYETVYETLKTLK---KQGYKLGIVTTKMRDTVEMGLKLT-------GLDEFFDVVITLDDVEHAKPDPEPVLKALEL 150 (214)
T ss_pred cccCcCHHHHHHHHH---HCCCeEEEEeCCCHHHHHHHHHHc-------CChhceeEEEecCcCCCCCCCcHHHHHHHHH
Confidence 567899999888886 456899999999999999999884 445566678876442 11223333322
Q ss_pred CCCCCcEEEEEcCCcc
Q 004493 335 GTCHPKMALVIDDRLK 350 (749)
Q Consensus 335 g~c~~~mvVIIDDR~d 350 (749)
....++-+++|+|+..
T Consensus 151 ~~~~~~~~~~iGDs~~ 166 (214)
T PRK13288 151 LGAKPEEALMVGDNHH 166 (214)
T ss_pred cCCCHHHEEEECCCHH
Confidence 2245678899999963
No 18
>TIGR01454 AHBA_synth_RP 3-amino-5-hydroxybenoic acid synthesis related protein. The most closely related enzyme below the noise cutoff is IndB which is involved in the biosynthesis of Indigoidine in Pectobacterium (Erwinia) chrysanthemi, a gamma proteobacter. This enzyme is similarly related to PGP. In this case, too it is unclear what role would be be played by a PGPase activity.
Probab=97.54 E-value=0.00044 Score=66.92 Aligned_cols=81 Identities=15% Similarity=0.133 Sum_probs=56.2
Q ss_pred EEeeCCChhhHHHHHhhhccccEEEEEEeCCcHHHHHHHHHhcCCCCCcccccccCCcEEEccCC-C----ccchhhhcc
Q 004493 259 LVRLRPAWEDLRSYLTARGRKRFEVYVCTMAERDYALEMWRLLDPESNLINTKELLDRIVCVKSG-S----RKSLFNVFQ 333 (749)
Q Consensus 259 ~VKLRPgv~ELr~FL~a~~sk~FELyVyTmGtR~YA~eI~rLLDPdg~LFg~~~l~~RIISresg-~----~KsL~~LFp 333 (749)
.+++.|++.+++.+|+ ++.|.+.|+|++.+.++..+++.++ ..++++.+++.++. . ..-+..+..
T Consensus 73 ~~~~~~g~~~~L~~L~---~~g~~~~i~Sn~~~~~~~~~l~~~~-------l~~~f~~i~~~~~~~~~KP~~~~~~~~~~ 142 (205)
T TIGR01454 73 EVEVFPGVPELLAELR---ADGVGTAIATGKSGPRARSLLEALG-------LLPLFDHVIGSDEVPRPKPAPDIVREALR 142 (205)
T ss_pred ccccCCCHHHHHHHHH---HCCCeEEEEeCCchHHHHHHHHHcC-------ChhheeeEEecCcCCCCCCChHHHHHHHH
Confidence 3577899999888886 4579999999999999999988743 34445677776442 1 112233322
Q ss_pred CCCCCCcEEEEEcCCc
Q 004493 334 DGTCHPKMALVIDDRL 349 (749)
Q Consensus 334 ~g~c~~~mvVIIDDR~ 349 (749)
.....++-+++|+|+.
T Consensus 143 ~~~~~~~~~l~igD~~ 158 (205)
T TIGR01454 143 LLDVPPEDAVMVGDAV 158 (205)
T ss_pred HcCCChhheEEEcCCH
Confidence 2225667799999985
No 19
>TIGR01548 HAD-SF-IA-hyp1 haloacid dehalogenase superfamily, subfamily IA hydrolase, TIGR01548. All but the Halobacterium sequence currently found are annotated as "Imidazoleglycerol-phosphate dehydratase", however, the source of the annotation could not be traced and significant homology could not be found between any of these sequences and known IGPD's.
Probab=97.53 E-value=0.00062 Score=65.81 Aligned_cols=79 Identities=15% Similarity=0.028 Sum_probs=55.0
Q ss_pred eeCCChhhHHHHHhhhccccEEEEEEeCCcHHHHHHHHHhcCCCCCcccccccCCcEEEccCCCcc----chhhhccCCC
Q 004493 261 RLRPAWEDLRSYLTARGRKRFEVYVCTMAERDYALEMWRLLDPESNLINTKELLDRIVCVKSGSRK----SLFNVFQDGT 336 (749)
Q Consensus 261 KLRPgv~ELr~FL~a~~sk~FELyVyTmGtR~YA~eI~rLLDPdg~LFg~~~l~~RIISresg~~K----sL~~LFp~g~ 336 (749)
+..|+..+++..|+ .+-+.+.|.|++.+.++..+++. ++...+++.+++.++...| .+..++....
T Consensus 106 ~~~~~~~~~L~~l~---~~g~~~~i~T~~~~~~~~~~l~~-------~gl~~~f~~~~~~~~~~~KP~p~~~~~~~~~~~ 175 (197)
T TIGR01548 106 ETLLTPKGLLRELH---RAPKGMAVVTGRPRKDAAKFLTT-------HGLEILFPVQIWMEDCPPKPNPEPLILAAKALG 175 (197)
T ss_pred ccccCHHHHHHHHH---HcCCcEEEECCCCHHHHHHHHHH-------cCchhhCCEEEeecCCCCCcCHHHHHHHHHHhC
Confidence 35567788888886 45689999999999999999988 4555666788887553112 1222222222
Q ss_pred CCCcEEEEEcCCc
Q 004493 337 CHPKMALVIDDRL 349 (749)
Q Consensus 337 c~~~mvVIIDDR~ 349 (749)
++++-+++|+|+.
T Consensus 176 ~~~~~~i~vGD~~ 188 (197)
T TIGR01548 176 VEACHAAMVGDTV 188 (197)
T ss_pred cCcccEEEEeCCH
Confidence 5677899999985
No 20
>TIGR01509 HAD-SF-IA-v3 haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED. HAD subfamilies caused by an overly broad single model.
Probab=97.52 E-value=0.00057 Score=63.57 Aligned_cols=79 Identities=19% Similarity=0.246 Sum_probs=50.7
Q ss_pred EeeCCChhhHHHHHhhhccccEEEEEEeCCcHHHHHHHHHhcCCCCCcccccccCCcEEEcc-CCCcc----chhhhccC
Q 004493 260 VRLRPAWEDLRSYLTARGRKRFEVYVCTMAERDYALEMWRLLDPESNLINTKELLDRIVCVK-SGSRK----SLFNVFQD 334 (749)
Q Consensus 260 VKLRPgv~ELr~FL~a~~sk~FELyVyTmGtR~YA~eI~rLLDPdg~LFg~~~l~~RIISre-sg~~K----sL~~LFp~ 334 (749)
+++.|++.++++.|+ .+-|.++|+|++.+.+ ..+..- ++...+++.|++-+ .+..| .+..++..
T Consensus 84 ~~~~~g~~~~l~~l~---~~g~~~~i~Tn~~~~~-~~~~~~-------~~l~~~f~~i~~~~~~~~~KP~~~~~~~~~~~ 152 (183)
T TIGR01509 84 LKPLPGVEPLLEALR---ARGKKLALLTNSPRDH-AVLVQE-------LGLRDLFDVVIFSGDVGRGKPDPDIYLLALKK 152 (183)
T ss_pred CccCcCHHHHHHHHH---HCCCeEEEEeCCchHH-HHHHHh-------cCCHHHCCEEEEcCCCCCCCCCHHHHHHHHHH
Confidence 678899999666665 3468999999999999 555543 33334556777642 22222 23333322
Q ss_pred CCCCCcEEEEEcCCc
Q 004493 335 GTCHPKMALVIDDRL 349 (749)
Q Consensus 335 g~c~~~mvVIIDDR~ 349 (749)
....++-+++|||+.
T Consensus 153 ~~~~~~~~~~vgD~~ 167 (183)
T TIGR01509 153 LGLKPEECLFVDDSP 167 (183)
T ss_pred cCCCcceEEEEcCCH
Confidence 225678899999985
No 21
>TIGR01993 Pyr-5-nucltdase pyrimidine 5'-nucleotidase. These enzymes are members of the haloacid dehalogenase (HAD) superfamily of hydrolases, specifically the IA subfamily (variant 3, TIGR01509).
Probab=97.51 E-value=0.00062 Score=64.87 Aligned_cols=78 Identities=19% Similarity=0.288 Sum_probs=51.3
Q ss_pred EEeeCCChhhHHHHHhhhccccEEEEEEeCCcHHHHHHHHHhcCCCCCcccccccCCcEEEccCC-C----ccc----hh
Q 004493 259 LVRLRPAWEDLRSYLTARGRKRFEVYVCTMAERDYALEMWRLLDPESNLINTKELLDRIVCVKSG-S----RKS----LF 329 (749)
Q Consensus 259 ~VKLRPgv~ELr~FL~a~~sk~FELyVyTmGtR~YA~eI~rLLDPdg~LFg~~~l~~RIISresg-~----~Ks----L~ 329 (749)
.+++.|++.+ +|+ +.. |.++|+|++.+.++..+++.+ +...+|+.|+|.++. . .|. +.
T Consensus 82 ~~~~~~g~~~---~L~-~L~--~~~~i~Tn~~~~~~~~~l~~~-------gl~~~fd~i~~~~~~~~~~~~~KP~p~~~~ 148 (184)
T TIGR01993 82 KLKPDPELRN---LLL-RLP--GRKIIFTNGDRAHARRALNRL-------GIEDCFDGIFCFDTANPDYLLPKPSPQAYE 148 (184)
T ss_pred hCCCCHHHHH---HHH-hCC--CCEEEEeCCCHHHHHHHHHHc-------CcHhhhCeEEEeecccCccCCCCCCHHHHH
Confidence 3467789988 555 443 679999999999999999884 333455678887432 2 132 22
Q ss_pred hhccCCCCCCcEEEEEcCCc
Q 004493 330 NVFQDGTCHPKMALVIDDRL 349 (749)
Q Consensus 330 ~LFp~g~c~~~mvVIIDDR~ 349 (749)
.++......++-+++|||+.
T Consensus 149 ~~~~~~~~~~~~~l~vgD~~ 168 (184)
T TIGR01993 149 KALREAGVDPERAIFFDDSA 168 (184)
T ss_pred HHHHHhCCCccceEEEeCCH
Confidence 22222224667889999985
No 22
>TIGR01488 HAD-SF-IB Haloacid Dehalogenase superfamily, subfamily IB, phosphoserine phosphatase-like. Subfamily IA includes the enzyme phosphoserine phosphatase (TIGR00338) as well as three hypothetical equivalogs. Many members of these hypothetical equivalogs have been annotated as PSPase-like or PSPase-family proteins. In particular, the hypothetical equivalog which appears to be most closely related to PSPase contains only Archaea (while TIGR00338 contains only eukaryotes and bacteria) of which some are annotated as PSPases. Although this is a reasonable conjecture, none of these sequences has sufficient evidence for this assignment. If such should be found, this model should be retired while the PSPase model should be broadened to include these sequences.
Probab=97.51 E-value=0.00069 Score=63.22 Aligned_cols=45 Identities=16% Similarity=0.242 Sum_probs=35.6
Q ss_pred eeCCChhhHHHHHhhhccccEEEEEEeCCcHHHHHHHHHhcCCCCCccc
Q 004493 261 RLRPAWEDLRSYLTARGRKRFEVYVCTMAERDYALEMWRLLDPESNLIN 309 (749)
Q Consensus 261 KLRPgv~ELr~FL~a~~sk~FELyVyTmGtR~YA~eI~rLLDPdg~LFg 309 (749)
+++|++.+++..|+ +.-+.++|.|.|.+.|+..+++.+.=+ .+|+
T Consensus 73 ~~~~g~~~~l~~l~---~~g~~~~ivS~~~~~~i~~~~~~~g~~-~~~~ 117 (177)
T TIGR01488 73 ALRPGARELISWLK---ERGIDTVIVSGGFDFFVEPVAEKLGID-DVFA 117 (177)
T ss_pred CcCcCHHHHHHHHH---HCCCEEEEECCCcHHHHHHHHHHcCCc-hhee
Confidence 46799999777776 456899999999999999999986433 3444
No 23
>PLN03243 haloacid dehalogenase-like hydrolase; Provisional
Probab=97.49 E-value=0.00063 Score=70.25 Aligned_cols=77 Identities=13% Similarity=0.214 Sum_probs=56.3
Q ss_pred EeeCCChhhHHHHHhhhccccEEEEEEeCCcHHHHHHHHHhcCCCCCcccccccCCcEEEccCC-C--------ccchhh
Q 004493 260 VRLRPAWEDLRSYLTARGRKRFEVYVCTMAERDYALEMWRLLDPESNLINTKELLDRIVCVKSG-S--------RKSLFN 330 (749)
Q Consensus 260 VKLRPgv~ELr~FL~a~~sk~FELyVyTmGtR~YA~eI~rLLDPdg~LFg~~~l~~RIISresg-~--------~KsL~~ 330 (749)
+++.||+.+++..|+ ++-|-+.|.|++.+.++..+++.+ +...+|+.|++.++. . .+.+++
T Consensus 108 ~~l~pg~~e~L~~L~---~~g~~l~I~Tn~~~~~~~~~l~~~-------gl~~~Fd~ii~~~d~~~~KP~Pe~~~~a~~~ 177 (260)
T PLN03243 108 YRLRPGSREFVQALK---KHEIPIAVASTRPRRYLERAIEAV-------GMEGFFSVVLAAEDVYRGKPDPEMFMYAAER 177 (260)
T ss_pred cccCCCHHHHHHHHH---HCCCEEEEEeCcCHHHHHHHHHHc-------CCHhhCcEEEecccCCCCCCCHHHHHHHHHH
Confidence 567899999777776 467999999999999999999984 344456788877542 1 122333
Q ss_pred hccCCCCCCcEEEEEcCCcc
Q 004493 331 VFQDGTCHPKMALVIDDRLK 350 (749)
Q Consensus 331 LFp~g~c~~~mvVIIDDR~d 350 (749)
++ ..++-+++|+|+..
T Consensus 178 -l~---~~p~~~l~IgDs~~ 193 (260)
T PLN03243 178 -LG---FIPERCIVFGNSNS 193 (260)
T ss_pred -hC---CChHHeEEEcCCHH
Confidence 22 56778999999853
No 24
>TIGR01549 HAD-SF-IA-v1 haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E. HAD subfamilies caused by an overly broad single model.
Probab=97.43 E-value=0.00065 Score=62.48 Aligned_cols=75 Identities=13% Similarity=0.069 Sum_probs=50.3
Q ss_pred eCCChhhHHHHHhhhccccEEEEEEeCCcHHHHHHHHHhcCCCCCcccccccCCcEEEccCCCcc----chhhhccCCCC
Q 004493 262 LRPAWEDLRSYLTARGRKRFEVYVCTMAERDYALEMWRLLDPESNLINTKELLDRIVCVKSGSRK----SLFNVFQDGTC 337 (749)
Q Consensus 262 LRPgv~ELr~FL~a~~sk~FELyVyTmGtR~YA~eI~rLLDPdg~LFg~~~l~~RIISresg~~K----sL~~LFp~g~c 337 (749)
..||+.+++.+|+ ++-+.++|.|++.+.++..+++.+ -..+| +.|++.++...| .+..++....+
T Consensus 65 ~~~g~~e~l~~L~---~~g~~~~i~T~~~~~~~~~~~~~~--l~~~f------~~i~~~~~~~~Kp~~~~~~~~~~~~~~ 133 (154)
T TIGR01549 65 YIRGAADLLKRLK---EAGIKLGIISNGSLRAQKLLLRKH--LGDYF------DLILGSDEFGAKPEPEIFLAALESLGL 133 (154)
T ss_pred eccCHHHHHHHHH---HCcCeEEEEeCCchHHHHHHHHHH--HHhcC------cEEEecCCCCCCcCHHHHHHHHHHcCC
Confidence 3489999888886 456899999999999999999984 22333 578776532122 22222222224
Q ss_pred CCcEEEEEcCC
Q 004493 338 HPKMALVIDDR 348 (749)
Q Consensus 338 ~~~mvVIIDDR 348 (749)
.+ -+++|+|+
T Consensus 134 ~~-~~l~iGDs 143 (154)
T TIGR01549 134 PP-EVLHVGDN 143 (154)
T ss_pred CC-CEEEEeCC
Confidence 55 68889997
No 25
>cd01427 HAD_like Haloacid dehalogenase-like hydrolases. The haloacid dehalogenase-like (HAD) superfamily includes L-2-haloacid dehalogenase, epoxide hydrolase, phosphoserine phosphatase, phosphomannomutase, phosphoglycolate phosphatase, P-type ATPase, and many others, all of which use a nucleophilic aspartate in their phosphoryl transfer reaction. All members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. Members of this superfamily are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.
Probab=97.39 E-value=0.00031 Score=60.20 Aligned_cols=40 Identities=23% Similarity=0.268 Sum_probs=31.9
Q ss_pred EeeCCChhhHHHHHhhhccccEEEEEEeCCcHHHHHHHHHhcC
Q 004493 260 VRLRPAWEDLRSYLTARGRKRFEVYVCTMAERDYALEMWRLLD 302 (749)
Q Consensus 260 VKLRPgv~ELr~FL~a~~sk~FELyVyTmGtR~YA~eI~rLLD 302 (749)
.+++|++.++++.|+ ..-+.++|+|++.+.++..+++.+.
T Consensus 23 ~~~~~~~~~~l~~l~---~~g~~i~ivS~~~~~~~~~~~~~~~ 62 (139)
T cd01427 23 LELYPGVKEALKELK---EKGIKLALATNKSRREVLELLEELG 62 (139)
T ss_pred CCcCcCHHHHHHHHH---HCCCeEEEEeCchHHHHHHHHHHcC
Confidence 456688988666665 3459999999999999999998853
No 26
>PRK13223 phosphoglycolate phosphatase; Provisional
Probab=97.38 E-value=0.00046 Score=71.18 Aligned_cols=80 Identities=15% Similarity=0.228 Sum_probs=55.0
Q ss_pred EeeCCChhhHHHHHhhhccccEEEEEEeCCcHHHHHHHHHhcCCCCCcccccccCCcEEEccCC-Ccc----chhhhccC
Q 004493 260 VRLRPAWEDLRSYLTARGRKRFEVYVCTMAERDYALEMWRLLDPESNLINTKELLDRIVCVKSG-SRK----SLFNVFQD 334 (749)
Q Consensus 260 VKLRPgv~ELr~FL~a~~sk~FELyVyTmGtR~YA~eI~rLLDPdg~LFg~~~l~~RIISresg-~~K----sL~~LFp~ 334 (749)
+++.|++.++++.|+ .+-+.+.|.|++.+.++..+++.++ ...+++.|+|.++. ..| .+..++..
T Consensus 100 ~~~~~g~~e~L~~Lk---~~g~~l~ivTn~~~~~~~~~l~~~~-------i~~~f~~i~~~d~~~~~Kp~p~~~~~~~~~ 169 (272)
T PRK13223 100 TVVYPGVRDTLKWLK---KQGVEMALITNKPERFVAPLLDQMK-------IGRYFRWIIGGDTLPQKKPDPAALLFVMKM 169 (272)
T ss_pred CccCCCHHHHHHHHH---HCCCeEEEEECCcHHHHHHHHHHcC-------cHhhCeEEEecCCCCCCCCCcHHHHHHHHH
Confidence 577899999888886 4568999999999999999888743 23345578776432 111 13333322
Q ss_pred CCCCCcEEEEEcCCc
Q 004493 335 GTCHPKMALVIDDRL 349 (749)
Q Consensus 335 g~c~~~mvVIIDDR~ 349 (749)
....++-+++|||+.
T Consensus 170 ~g~~~~~~l~IGD~~ 184 (272)
T PRK13223 170 AGVPPSQSLFVGDSR 184 (272)
T ss_pred hCCChhHEEEECCCH
Confidence 225677899999984
No 27
>PRK13222 phosphoglycolate phosphatase; Provisional
Probab=97.38 E-value=0.0012 Score=63.88 Aligned_cols=80 Identities=16% Similarity=0.202 Sum_probs=54.5
Q ss_pred EeeCCChhhHHHHHhhhccccEEEEEEeCCcHHHHHHHHHhcCCCCCcccccccCCcEEEccCC-Ccc----chhhhccC
Q 004493 260 VRLRPAWEDLRSYLTARGRKRFEVYVCTMAERDYALEMWRLLDPESNLINTKELLDRIVCVKSG-SRK----SLFNVFQD 334 (749)
Q Consensus 260 VKLRPgv~ELr~FL~a~~sk~FELyVyTmGtR~YA~eI~rLLDPdg~LFg~~~l~~RIISresg-~~K----sL~~LFp~ 334 (749)
++++|++.+++..|+ ...+.+.|+|++.+.++..+++.++= ..+++.+++.++. ..| .+..++..
T Consensus 92 ~~~~~g~~~~l~~l~---~~g~~~~i~S~~~~~~~~~~l~~~~l-------~~~f~~~~~~~~~~~~kp~~~~~~~~~~~ 161 (226)
T PRK13222 92 SRLYPGVKETLAALK---AAGYPLAVVTNKPTPFVAPLLEALGI-------ADYFSVVIGGDSLPNKKPDPAPLLLACEK 161 (226)
T ss_pred CccCCCHHHHHHHHH---HCCCeEEEEeCCCHHHHHHHHHHcCC-------ccCccEEEcCCCCCCCCcChHHHHHHHHH
Confidence 578899999777776 45799999999999999999988642 2344567765432 112 12222222
Q ss_pred CCCCCcEEEEEcCCc
Q 004493 335 GTCHPKMALVIDDRL 349 (749)
Q Consensus 335 g~c~~~mvVIIDDR~ 349 (749)
....++-+++|+|+.
T Consensus 162 ~~~~~~~~i~igD~~ 176 (226)
T PRK13222 162 LGLDPEEMLFVGDSR 176 (226)
T ss_pred cCCChhheEEECCCH
Confidence 225667899999984
No 28
>TIGR01491 HAD-SF-IB-PSPlk HAD-superfamily, subfamily-IB PSPase-like hydrolase, archaeal. This hypothetical equivalog is a member of the IB subfamily (TIGR01488) of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this alignment are all from archaeal species. The phylogenetically closest group of sequences to these are phosphoserine phosphatases (TIGR00338). There are no known archaeal phosphoserine phosphatases, and no archaea fall within TIGR00338. It is likely, then, that This model represents the archaeal branch of the PSPase equivalog.
Probab=97.38 E-value=0.0011 Score=62.94 Aligned_cols=46 Identities=20% Similarity=0.247 Sum_probs=37.9
Q ss_pred EeeCCChhhHHHHHhhhccccEEEEEEeCCcHHHHHHHHHhcCCCCCccc
Q 004493 260 VRLRPAWEDLRSYLTARGRKRFEVYVCTMAERDYALEMWRLLDPESNLIN 309 (749)
Q Consensus 260 VKLRPgv~ELr~FL~a~~sk~FELyVyTmGtR~YA~eI~rLLDPdg~LFg 309 (749)
++++|++.+++++|+ ++-+.++|.|+|.+.++..+++.+.-+ .+|.
T Consensus 79 ~~~~~g~~e~l~~l~---~~g~~~~IvS~~~~~~~~~~l~~~g~~-~~~~ 124 (201)
T TIGR01491 79 ISLRDYAEELVRWLK---EKGLKTAIVSGGIMCLAKKVAEKLNPD-YVYS 124 (201)
T ss_pred CCCCccHHHHHHHHH---HCCCEEEEEeCCcHHHHHHHHHHhCCC-eEEE
Confidence 368899999888886 567999999999999999999987643 3454
No 29
>PRK13225 phosphoglycolate phosphatase; Provisional
Probab=97.35 E-value=0.00087 Score=69.79 Aligned_cols=80 Identities=14% Similarity=0.192 Sum_probs=53.8
Q ss_pred EeeCCChhhHHHHHhhhccccEEEEEEeCCcHHHHHHHHHhcCCCCCcccccccCCcEEEccCC--CccchhhhccCCCC
Q 004493 260 VRLRPAWEDLRSYLTARGRKRFEVYVCTMAERDYALEMWRLLDPESNLINTKELLDRIVCVKSG--SRKSLFNVFQDGTC 337 (749)
Q Consensus 260 VKLRPgv~ELr~FL~a~~sk~FELyVyTmGtR~YA~eI~rLLDPdg~LFg~~~l~~RIISresg--~~KsL~~LFp~g~c 337 (749)
+++-|++.+++.+|+ .+.+.+.|.|++.+.++..+++.++ ...+++.|++.+.. ....+..++.....
T Consensus 141 ~~l~pg~~e~L~~L~---~~gi~laIvSn~~~~~~~~~L~~~g-------l~~~F~~vi~~~~~~~k~~~~~~~l~~~~~ 210 (273)
T PRK13225 141 LQLFPGVADLLAQLR---SRSLCLGILSSNSRQNIEAFLQRQG-------LRSLFSVVQAGTPILSKRRALSQLVAREGW 210 (273)
T ss_pred CCcCCCHHHHHHHHH---HCCCeEEEEeCCCHHHHHHHHHHcC-------ChhheEEEEecCCCCCCHHHHHHHHHHhCc
Confidence 456799999888886 5678999999999999999998854 33344556665432 11222222211113
Q ss_pred CCcEEEEEcCCc
Q 004493 338 HPKMALVIDDRL 349 (749)
Q Consensus 338 ~~~mvVIIDDR~ 349 (749)
.++-+++|+|+.
T Consensus 211 ~p~~~l~IGDs~ 222 (273)
T PRK13225 211 QPAAVMYVGDET 222 (273)
T ss_pred ChhHEEEECCCH
Confidence 567799999984
No 30
>PRK10826 2-deoxyglucose-6-phosphatase; Provisional
Probab=97.35 E-value=0.00096 Score=65.51 Aligned_cols=92 Identities=8% Similarity=0.137 Sum_probs=63.6
Q ss_pred EeeCCChhhHHHHHhhhccccEEEEEEeCCcHHHHHHHHHhcCCCCCcccccccCCcEEEccCC-----CccchhhhccC
Q 004493 260 VRLRPAWEDLRSYLTARGRKRFEVYVCTMAERDYALEMWRLLDPESNLINTKELLDRIVCVKSG-----SRKSLFNVFQD 334 (749)
Q Consensus 260 VKLRPgv~ELr~FL~a~~sk~FELyVyTmGtR~YA~eI~rLLDPdg~LFg~~~l~~RIISresg-----~~KsL~~LFp~ 334 (749)
.++.|++.+++.+|+ ++-|.++|.|++.+.++..+++. ++...+++.++|.+.. +...+..++..
T Consensus 91 ~~~~~g~~~~l~~l~---~~g~~~~i~S~~~~~~~~~~l~~-------~~l~~~f~~~~~~~~~~~~Kp~~~~~~~~~~~ 160 (222)
T PRK10826 91 RPLLPGVREALALCK---AQGLKIGLASASPLHMLEAVLTM-------FDLRDYFDALASAEKLPYSKPHPEVYLNCAAK 160 (222)
T ss_pred CCCCCCHHHHHHHHH---HCCCeEEEEeCCcHHHHHHHHHh-------CcchhcccEEEEcccCCCCCCCHHHHHHHHHH
Confidence 467799999888886 56799999999999999999998 4455566788887432 11234444333
Q ss_pred CCCCCcEEEEEcCCcccCCCCCCCCeE
Q 004493 335 GTCHPKMALVIDDRLKVWDDKDQPRVH 361 (749)
Q Consensus 335 g~c~~~mvVIIDDR~dVW~~~~qn~I~ 361 (749)
....++-+++|+|+..=........+.
T Consensus 161 ~~~~~~~~~~igDs~~Di~aA~~aG~~ 187 (222)
T PRK10826 161 LGVDPLTCVALEDSFNGMIAAKAARMR 187 (222)
T ss_pred cCCCHHHeEEEcCChhhHHHHHHcCCE
Confidence 235667899999997655443333443
No 31
>PLN02954 phosphoserine phosphatase
Probab=97.32 E-value=0.0014 Score=64.08 Aligned_cols=47 Identities=21% Similarity=0.285 Sum_probs=37.8
Q ss_pred EeeCCChhhHHHHHhhhccccEEEEEEeCCcHHHHHHHHHhcCCCC-Cccc
Q 004493 260 VRLRPAWEDLRSYLTARGRKRFEVYVCTMAERDYALEMWRLLDPES-NLIN 309 (749)
Q Consensus 260 VKLRPgv~ELr~FL~a~~sk~FELyVyTmGtR~YA~eI~rLLDPdg-~LFg 309 (749)
.+++|++.+++.+|+ .+.+.++|.|.|.+.++..+++.+.=+. .+|.
T Consensus 83 ~~l~pg~~e~l~~l~---~~g~~~~IvS~~~~~~i~~~l~~~gi~~~~~~~ 130 (224)
T PLN02954 83 PRLSPGIPELVKKLR---ARGTDVYLVSGGFRQMIAPVAAILGIPPENIFA 130 (224)
T ss_pred CCCCccHHHHHHHHH---HCCCEEEEECCCcHHHHHHHHHHhCCChhhEEE
Confidence 357899999888887 4678999999999999999999865332 3554
No 32
>TIGR00338 serB phosphoserine phosphatase SerB. Phosphoserine phosphatase catalyzes the reaction 3-phospho-serine + H2O = L-serine + phosphate. It catalyzes the last of three steps in the biosynthesis of serine from D-3-phosphoglycerate. Note that this enzyme acts on free phosphoserine, not on phosphoserine residues of phosphoproteins.
Probab=97.32 E-value=0.001 Score=64.84 Aligned_cols=46 Identities=20% Similarity=0.149 Sum_probs=36.4
Q ss_pred EeeCCChhhHHHHHhhhccccEEEEEEeCCcHHHHHHHHHhcCCCCCccc
Q 004493 260 VRLRPAWEDLRSYLTARGRKRFEVYVCTMAERDYALEMWRLLDPESNLIN 309 (749)
Q Consensus 260 VKLRPgv~ELr~FL~a~~sk~FELyVyTmGtR~YA~eI~rLLDPdg~LFg 309 (749)
++++|++.+++..|+ .+-+.++|.|+|.+.++..+++.+.=+. +|+
T Consensus 84 ~~~~~g~~~~l~~l~---~~g~~~~IvS~~~~~~~~~~l~~~~i~~-~~~ 129 (219)
T TIGR00338 84 LPLTEGAEELVKTLK---EKGYKVAVISGGFDLFAEHVKDKLGLDA-AFA 129 (219)
T ss_pred CCcCCCHHHHHHHHH---HCCCEEEEECCCcHHHHHHHHHHcCCCc-eEe
Confidence 468899999777775 4569999999999999999999865332 454
No 33
>PLN02575 haloacid dehalogenase-like hydrolase
Probab=97.31 E-value=0.0014 Score=72.08 Aligned_cols=81 Identities=15% Similarity=0.158 Sum_probs=58.6
Q ss_pred EeeCCChhhHHHHHhhhccccEEEEEEeCCcHHHHHHHHHhcCCCCCcccccccCCcEEEccCC-Cccc----hhhhccC
Q 004493 260 VRLRPAWEDLRSYLTARGRKRFEVYVCTMAERDYALEMWRLLDPESNLINTKELLDRIVCVKSG-SRKS----LFNVFQD 334 (749)
Q Consensus 260 VKLRPgv~ELr~FL~a~~sk~FELyVyTmGtR~YA~eI~rLLDPdg~LFg~~~l~~RIISresg-~~Ks----L~~LFp~ 334 (749)
+.+.||+.+++.+|+ .+.+.+.|.|++.+.|+..+++. ++...+|+.|++.++. ..|- +......
T Consensus 215 ~~l~pGa~ElL~~Lk---~~GiklaIaSn~~~~~~~~~L~~-------lgL~~yFd~Iv~sddv~~~KP~Peifl~A~~~ 284 (381)
T PLN02575 215 YRLRTGSQEFVNVLM---NYKIPMALVSTRPRKTLENAIGS-------IGIRGFFSVIVAAEDVYRGKPDPEMFIYAAQL 284 (381)
T ss_pred CCcCcCHHHHHHHHH---HCCCeEEEEeCCCHHHHHHHHHH-------cCCHHHceEEEecCcCCCCCCCHHHHHHHHHH
Confidence 456799999888887 56799999999999999999998 5666677899988653 1111 1111111
Q ss_pred CCCCCcEEEEEcCCcc
Q 004493 335 GTCHPKMALVIDDRLK 350 (749)
Q Consensus 335 g~c~~~mvVIIDDR~d 350 (749)
....++-+++|+|+..
T Consensus 285 lgl~Peecl~IGDS~~ 300 (381)
T PLN02575 285 LNFIPERCIVFGNSNQ 300 (381)
T ss_pred cCCCcccEEEEcCCHH
Confidence 1256788999999864
No 34
>TIGR01428 HAD_type_II 2-haloalkanoic acid dehalogenase, type II. Note that the Type I HAD enzymes have not yet been fully characterized, but clearly utilize a substantially different catalytic mechanism and are thus unlikely to be related.
Probab=97.30 E-value=0.0003 Score=67.62 Aligned_cols=79 Identities=8% Similarity=0.069 Sum_probs=52.4
Q ss_pred eeCCChhhHHHHHhhhccccEEEEEEeCCcHHHHHHHHHhcCCCCCcccccccCCcEEEccCC-Cccc----hhhhccCC
Q 004493 261 RLRPAWEDLRSYLTARGRKRFEVYVCTMAERDYALEMWRLLDPESNLINTKELLDRIVCVKSG-SRKS----LFNVFQDG 335 (749)
Q Consensus 261 KLRPgv~ELr~FL~a~~sk~FELyVyTmGtR~YA~eI~rLLDPdg~LFg~~~l~~RIISresg-~~Ks----L~~LFp~g 335 (749)
++.|++.++++.|+ .+-|.++|.|||.+.++..+++.+ +...+++.|++.++. ..|- +..++...
T Consensus 92 ~~~~~~~~~L~~L~---~~g~~~~i~Sn~~~~~~~~~l~~~-------gl~~~fd~i~~s~~~~~~KP~~~~~~~~~~~~ 161 (198)
T TIGR01428 92 PPHPDVPAGLRALK---ERGYRLAILSNGSPAMLKSLVKHA-------GLDDPFDAVLSADAVRAYKPAPQVYQLALEAL 161 (198)
T ss_pred CCCCCHHHHHHHHH---HCCCeEEEEeCCCHHHHHHHHHHC-------CChhhhheeEehhhcCCCCCCHHHHHHHHHHh
Confidence 56799999666664 345999999999999999998874 334456678876432 2221 12222111
Q ss_pred CCCCcEEEEEcCCc
Q 004493 336 TCHPKMALVIDDRL 349 (749)
Q Consensus 336 ~c~~~mvVIIDDR~ 349 (749)
...++-+++|+|+.
T Consensus 162 ~~~p~~~~~vgD~~ 175 (198)
T TIGR01428 162 GVPPDEVLFVASNP 175 (198)
T ss_pred CCChhhEEEEeCCH
Confidence 14577889999986
No 35
>PRK11587 putative phosphatase; Provisional
Probab=97.26 E-value=0.0018 Score=63.71 Aligned_cols=80 Identities=14% Similarity=0.000 Sum_probs=51.2
Q ss_pred EEeeCCChhhHHHHHhhhccccEEEEEEeCCcHHHHHHHHHhcCCCCCcccccccCCcEEEccCC-Ccc----chhhhcc
Q 004493 259 LVRLRPAWEDLRSYLTARGRKRFEVYVCTMAERDYALEMWRLLDPESNLINTKELLDRIVCVKSG-SRK----SLFNVFQ 333 (749)
Q Consensus 259 ~VKLRPgv~ELr~FL~a~~sk~FELyVyTmGtR~YA~eI~rLLDPdg~LFg~~~l~~RIISresg-~~K----sL~~LFp 333 (749)
.+++.||+.+++.+|+ .+.|.+.|.|++.+.++..+++.+.= .+| .-|+|.++. ..| .+.....
T Consensus 81 ~~~~~pg~~e~L~~L~---~~g~~~~ivTn~~~~~~~~~l~~~~l--~~~------~~i~~~~~~~~~KP~p~~~~~~~~ 149 (218)
T PRK11587 81 GITALPGAIALLNHLN---KLGIPWAIVTSGSVPVASARHKAAGL--PAP------EVFVTAERVKRGKPEPDAYLLGAQ 149 (218)
T ss_pred CceeCcCHHHHHHHHH---HcCCcEEEEcCCCchHHHHHHHhcCC--CCc------cEEEEHHHhcCCCCCcHHHHHHHH
Confidence 4578899999888886 56799999999999988777665321 122 356766331 111 1222111
Q ss_pred CCCCCCcEEEEEcCCc
Q 004493 334 DGTCHPKMALVIDDRL 349 (749)
Q Consensus 334 ~g~c~~~mvVIIDDR~ 349 (749)
.....++-+++|+|+.
T Consensus 150 ~~g~~p~~~l~igDs~ 165 (218)
T PRK11587 150 LLGLAPQECVVVEDAP 165 (218)
T ss_pred HcCCCcccEEEEecch
Confidence 1125677899999985
No 36
>PLN02940 riboflavin kinase
Probab=97.24 E-value=0.00024 Score=77.05 Aligned_cols=81 Identities=19% Similarity=0.144 Sum_probs=56.3
Q ss_pred EeeCCChhhHHHHHhhhccccEEEEEEeCCcHHHHHHHHH-hcCCCCCcccccccCCcEEEccCC-Ccc----chhhhcc
Q 004493 260 VRLRPAWEDLRSYLTARGRKRFEVYVCTMAERDYALEMWR-LLDPESNLINTKELLDRIVCVKSG-SRK----SLFNVFQ 333 (749)
Q Consensus 260 VKLRPgv~ELr~FL~a~~sk~FELyVyTmGtR~YA~eI~r-LLDPdg~LFg~~~l~~RIISresg-~~K----sL~~LFp 333 (749)
+++.||+.+++++|+ ++-+.+.|.|++.+.++..+++ . ++...+++.|+|.++. ..| -+..++.
T Consensus 92 ~~l~pGv~elL~~Lk---~~g~~l~IvTn~~~~~~~~~l~~~-------~gl~~~Fd~ii~~d~v~~~KP~p~~~~~a~~ 161 (382)
T PLN02940 92 IKALPGANRLIKHLK---SHGVPMALASNSPRANIEAKISCH-------QGWKESFSVIVGGDEVEKGKPSPDIFLEAAK 161 (382)
T ss_pred CCCCcCHHHHHHHHH---HCCCcEEEEeCCcHHHHHHHHHhc-------cChHhhCCEEEehhhcCCCCCCHHHHHHHHH
Confidence 457799999888887 5679999999999999998775 4 4445566788887542 222 2222222
Q ss_pred CCCCCCcEEEEEcCCcc
Q 004493 334 DGTCHPKMALVIDDRLK 350 (749)
Q Consensus 334 ~g~c~~~mvVIIDDR~d 350 (749)
.....++-+|+|+|+..
T Consensus 162 ~lgv~p~~~l~VGDs~~ 178 (382)
T PLN02940 162 RLNVEPSNCLVIEDSLP 178 (382)
T ss_pred HcCCChhHEEEEeCCHH
Confidence 22245677999999963
No 37
>PRK13226 phosphoglycolate phosphatase; Provisional
Probab=97.24 E-value=0.0015 Score=65.12 Aligned_cols=81 Identities=14% Similarity=-0.001 Sum_probs=55.0
Q ss_pred EEeeCCChhhHHHHHhhhccccEEEEEEeCCcHHHHHHHHHhcCCCCCcccccccCCcEEEccCC-Ccc----chhhhcc
Q 004493 259 LVRLRPAWEDLRSYLTARGRKRFEVYVCTMAERDYALEMWRLLDPESNLINTKELLDRIVCVKSG-SRK----SLFNVFQ 333 (749)
Q Consensus 259 ~VKLRPgv~ELr~FL~a~~sk~FELyVyTmGtR~YA~eI~rLLDPdg~LFg~~~l~~RIISresg-~~K----sL~~LFp 333 (749)
.+++.|++.++++.|+ ++-+-+.|.|++.+.++..+++.+ +...+|+.|++.++. ..| -+..+..
T Consensus 93 ~~~~~pg~~~~L~~L~---~~g~~l~i~Tn~~~~~~~~~l~~~-------~l~~~f~~i~~~~~~~~~KP~p~~~~~~~~ 162 (229)
T PRK13226 93 QSQLFDGVEGMLQRLE---CAGCVWGIVTNKPEYLARLILPQL-------GWEQRCAVLIGGDTLAERKPHPLPLLVAAE 162 (229)
T ss_pred cCeeCCCHHHHHHHHH---HCCCeEEEECCCCHHHHHHHHHHc-------CchhcccEEEecCcCCCCCCCHHHHHHHHH
Confidence 4678899999888886 456899999999999999988874 333345567775432 111 1222222
Q ss_pred CCCCCCcEEEEEcCCc
Q 004493 334 DGTCHPKMALVIDDRL 349 (749)
Q Consensus 334 ~g~c~~~mvVIIDDR~ 349 (749)
.....++-+++|+|+.
T Consensus 163 ~l~~~p~~~l~IGDs~ 178 (229)
T PRK13226 163 RIGVAPTDCVYVGDDE 178 (229)
T ss_pred HhCCChhhEEEeCCCH
Confidence 1124678899999995
No 38
>TIGR03351 PhnX-like phosphonatase-like hydrolase. This clade of sequences are the closest homologs to the PhnX enzyme, phosphonoacetaldehyde (Pald) hydrolase (phosphonatase, TIGR01422). This phosphonatase-like enzyme and PhnX itself are members of the haloacid dehalogenase (HAD) superfamily (pfam00702) having a a number of distinctive features that set them apart from typical HAD enzymes. The typical HAD N-terminal motif DxDx(T/V) here is DxAGT and the usual conserved lysine prior to the C-terminal motif is instead an arginine. Also distinctive of phosphonatase, and particular to its bi-catalytic mechanism is a conserved lysine in the variable "cap" domain. This lysine forms a Schiff base with the aldehyde of phosphonoacetaldehyde, providing, through the resulting positive charge, a polarization of the C-P bond necesary for cleavage as well as a route to the initial product of cleavage, an ene-amine. The conservation of these elements in this phosphonatase-like enzyme suggests that the
Probab=97.24 E-value=0.0014 Score=63.96 Aligned_cols=81 Identities=17% Similarity=0.143 Sum_probs=55.8
Q ss_pred EeeCCChhhHHHHHhhhccccEEEEEEeCCcHHHHHHHHHhcCCC-CCcccccccCCcEEEccCC-Cc----cchhhhcc
Q 004493 260 VRLRPAWEDLRSYLTARGRKRFEVYVCTMAERDYALEMWRLLDPE-SNLINTKELLDRIVCVKSG-SR----KSLFNVFQ 333 (749)
Q Consensus 260 VKLRPgv~ELr~FL~a~~sk~FELyVyTmGtR~YA~eI~rLLDPd-g~LFg~~~l~~RIISresg-~~----KsL~~LFp 333 (749)
+++.||+.+++..|+ ++.|.+.|.|++.+.++..+++.++=. +.+| +.|+|.++- .. .-+..++.
T Consensus 86 ~~l~~G~~~~L~~L~---~~g~~~~ivT~~~~~~~~~~l~~~~l~~~~~f------~~i~~~~~~~~~KP~p~~~~~a~~ 156 (220)
T TIGR03351 86 PVALPGAEEAFRSLR---SSGIKVALTTGFDRDTAERLLEKLGWTVGDDV------DAVVCPSDVAAGRPAPDLILRAME 156 (220)
T ss_pred CccCCCHHHHHHHHH---HCCCEEEEEeCCchHHHHHHHHHhhhhhhccC------CEEEcCCcCCCCCCCHHHHHHHHH
Confidence 478899999877776 567999999999999999999985432 1444 578887542 11 12233332
Q ss_pred CCCCC-CcEEEEEcCCc
Q 004493 334 DGTCH-PKMALVIDDRL 349 (749)
Q Consensus 334 ~g~c~-~~mvVIIDDR~ 349 (749)
...+. ++-+++|+|+.
T Consensus 157 ~~~~~~~~~~~~igD~~ 173 (220)
T TIGR03351 157 LTGVQDVQSVAVAGDTP 173 (220)
T ss_pred HcCCCChhHeEEeCCCH
Confidence 22243 57899999985
No 39
>TIGR01422 phosphonatase phosphonoacetaldehyde hydrolase. This enzyme is a member of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases (pfam00702), and contains a modified version of the conserved catalytic motifs of that superfamily: the first motif is usually DxDx(T/V), here it is DxAxT, and in the third motif the normal conserved lysine is instead an arginine. Additionally, the enzyme contains a unique conserved catalytic lysine (B. cereus pos. 53) which is involved in the binding and activation of the substrate through the formation of a Schiff base. The substrate of this enzyme is the product of 2-aminoethylphosphonate (AEP) transaminase, phosphonoacetaldehyde. This degradation pathway for AEP may be related to its toxic properties which are utilized by microorganisms as a chemical warfare agent.
Probab=97.24 E-value=0.0021 Score=64.47 Aligned_cols=93 Identities=9% Similarity=0.022 Sum_probs=58.7
Q ss_pred EeeCCChhhHHHHHhhhccccEEEEEEeCCcHHHHHHHHHhcCCCCCcccccccCCcEEEccCC-Ccc----chhhhccC
Q 004493 260 VRLRPAWEDLRSYLTARGRKRFEVYVCTMAERDYALEMWRLLDPESNLINTKELLDRIVCVKSG-SRK----SLFNVFQD 334 (749)
Q Consensus 260 VKLRPgv~ELr~FL~a~~sk~FELyVyTmGtR~YA~eI~rLLDPdg~LFg~~~l~~RIISresg-~~K----sL~~LFp~ 334 (749)
+++.||+.+++.+|+ ++-+.+.|.|++.+.++..+++.+.=.+ +| ++.|+|.++. ..| .+...+..
T Consensus 98 ~~~~pg~~e~L~~L~---~~g~~l~IvT~~~~~~~~~~l~~~gl~~-~f-----~d~ii~~~~~~~~KP~p~~~~~a~~~ 168 (253)
T TIGR01422 98 SSPIPGVIEVIAYLR---ARGIKIGSTTGYTREMMDVVAPEAALQG-YR-----PDYNVTTDDVPAGRPAPWMALKNAIE 168 (253)
T ss_pred CccCCCHHHHHHHHH---HCCCeEEEECCCcHHHHHHHHHHHHhcC-CC-----CceEEccccCCCCCCCHHHHHHHHHH
Confidence 567899999888886 4569999999999999999998854222 22 2678887542 111 12222211
Q ss_pred CCC-CCcEEEEEcCCc-ccCCCCCCCCeEE
Q 004493 335 GTC-HPKMALVIDDRL-KVWDDKDQPRVHV 362 (749)
Q Consensus 335 g~c-~~~mvVIIDDR~-dVW~~~~qn~I~v 362 (749)
... +++-+|+|+|+. |+-..+ ..++..
T Consensus 169 l~~~~~~~~l~IGDs~~Di~aA~-~aGi~~ 197 (253)
T TIGR01422 169 LGVYDVAACVKVGDTVPDIEEGR-NAGMWT 197 (253)
T ss_pred cCCCCchheEEECCcHHHHHHHH-HCCCeE
Confidence 113 367789999984 344333 234543
No 40
>TIGR02252 DREG-2 REG-2-like, HAD superfamily (subfamily IA) hydrolase. Most likely, these sequences, like the vast majority of HAD sequences, represent phosphatase enzymes.
Probab=97.23 E-value=0.0014 Score=63.18 Aligned_cols=79 Identities=19% Similarity=0.212 Sum_probs=50.9
Q ss_pred EeeCCChhhHHHHHhhhccccEEEEEEeCCcHHHHHHHHHhcCCCCCcccccccCCcEEEccC-CCccc----hhhhccC
Q 004493 260 VRLRPAWEDLRSYLTARGRKRFEVYVCTMAERDYALEMWRLLDPESNLINTKELLDRIVCVKS-GSRKS----LFNVFQD 334 (749)
Q Consensus 260 VKLRPgv~ELr~FL~a~~sk~FELyVyTmGtR~YA~eI~rLLDPdg~LFg~~~l~~RIISres-g~~Ks----L~~LFp~ 334 (749)
+++-|++.+++.+|+ .+.|.+.|.||+.+.+ ..+++. ++...+++.|++.++ +..|- +..++..
T Consensus 104 ~~~~~g~~~~l~~L~---~~g~~~~i~Sn~~~~~-~~~l~~-------~~l~~~fd~i~~s~~~~~~KP~~~~~~~~~~~ 172 (203)
T TIGR02252 104 WQVYPDAIKLLKDLR---ERGLILGVISNFDSRL-RGLLEA-------LGLLEYFDFVVTSYEVGAEKPDPKIFQEALER 172 (203)
T ss_pred ceeCcCHHHHHHHHH---HCCCEEEEEeCCchhH-HHHHHH-------CCcHHhcceEEeecccCCCCCCHHHHHHHHHH
Confidence 377899999777776 4568999999998865 555554 344455667776533 32221 2222222
Q ss_pred CCCCCcEEEEEcCCc
Q 004493 335 GTCHPKMALVIDDRL 349 (749)
Q Consensus 335 g~c~~~mvVIIDDR~ 349 (749)
....++-+|+|+|+.
T Consensus 173 ~~~~~~~~~~IgD~~ 187 (203)
T TIGR02252 173 AGISPEEALHIGDSL 187 (203)
T ss_pred cCCChhHEEEECCCc
Confidence 225678899999984
No 41
>COG0546 Gph Predicted phosphatases [General function prediction only]
Probab=97.20 E-value=0.0042 Score=61.85 Aligned_cols=87 Identities=17% Similarity=0.198 Sum_probs=57.4
Q ss_pred EEeeCCChhhHHHHHhhhccccEEEEEEeCCcHHHHHHHHHhcCCCCCcccccccCCcEEEccCC-Cc----cchhhhcc
Q 004493 259 LVRLRPAWEDLRSYLTARGRKRFEVYVCTMAERDYALEMWRLLDPESNLINTKELLDRIVCVKSG-SR----KSLFNVFQ 333 (749)
Q Consensus 259 ~VKLRPgv~ELr~FL~a~~sk~FELyVyTmGtR~YA~eI~rLLDPdg~LFg~~~l~~RIISresg-~~----KsL~~LFp 333 (749)
..++-|++.+++.-|+ ++-|.+.|+|+..+..+..+++. ++...+|.-|+|-++. .. ..|..+..
T Consensus 87 ~~~~~~gv~e~L~~L~---~~g~~l~i~T~k~~~~~~~~l~~-------~gl~~~F~~i~g~~~~~~~KP~P~~l~~~~~ 156 (220)
T COG0546 87 ESRLFPGVKELLAALK---SAGYKLGIVTNKPERELDILLKA-------LGLADYFDVIVGGDDVPPPKPDPEPLLLLLE 156 (220)
T ss_pred cCccCCCHHHHHHHHH---hCCCeEEEEeCCcHHHHHHHHHH-------hCCccccceEEcCCCCCCCCcCHHHHHHHHH
Confidence 3566799999888887 66799999999999999999998 6666677778883222 22 23333333
Q ss_pred CCCCCCcEEEEEcCC-cccCCCC
Q 004493 334 DGTCHPKMALVIDDR-LKVWDDK 355 (749)
Q Consensus 334 ~g~c~~~mvVIIDDR-~dVW~~~ 355 (749)
.....++-++.|.|+ .|+=..+
T Consensus 157 ~~~~~~~~~l~VGDs~~Di~aA~ 179 (220)
T COG0546 157 KLGLDPEEALMVGDSLNDILAAK 179 (220)
T ss_pred HhCCChhheEEECCCHHHHHHHH
Confidence 222234456666665 3444333
No 42
>TIGR01990 bPGM beta-phosphoglucomutase. The enzyme from L. lactis has been extensively characterized including a remarkable crystal structure which traps the pentacoordinate transition state.
Probab=97.12 E-value=0.0019 Score=60.73 Aligned_cols=78 Identities=14% Similarity=0.204 Sum_probs=49.5
Q ss_pred EeeCCChhhHHHHHhhhccccEEEEEEeCCcHHHHHHHHHhcCCCCCcccccccCCcEEEccC-CCcc----chhhhccC
Q 004493 260 VRLRPAWEDLRSYLTARGRKRFEVYVCTMAERDYALEMWRLLDPESNLINTKELLDRIVCVKS-GSRK----SLFNVFQD 334 (749)
Q Consensus 260 VKLRPgv~ELr~FL~a~~sk~FELyVyTmGtR~YA~eI~rLLDPdg~LFg~~~l~~RIISres-g~~K----sL~~LFp~ 334 (749)
.++.|++.++++.|+ ++.+.++|.|++.. +..+++. ++...+++.+++.++ +..| -+..++..
T Consensus 86 ~~~~pg~~~~L~~L~---~~g~~~~i~s~~~~--~~~~l~~-------~~l~~~f~~~~~~~~~~~~kp~p~~~~~~~~~ 153 (185)
T TIGR01990 86 ADVLPGIKNLLDDLK---KNNIKIALASASKN--APTVLEK-------LGLIDYFDAIVDPAEIKKGKPDPEIFLAAAEG 153 (185)
T ss_pred cccCccHHHHHHHHH---HCCCeEEEEeCCcc--HHHHHHh-------cCcHhhCcEEEehhhcCCCCCChHHHHHHHHH
Confidence 367799999888886 45799999998753 5556555 344456678887643 2111 12222222
Q ss_pred CCCCCcEEEEEcCCc
Q 004493 335 GTCHPKMALVIDDRL 349 (749)
Q Consensus 335 g~c~~~mvVIIDDR~ 349 (749)
...+++-+|+|+|+.
T Consensus 154 ~~~~~~~~v~vgD~~ 168 (185)
T TIGR01990 154 LGVSPSECIGIEDAQ 168 (185)
T ss_pred cCCCHHHeEEEecCH
Confidence 125667899999984
No 43
>PRK10725 fructose-1-P/6-phosphogluconate phosphatase; Provisional
Probab=97.02 E-value=0.00052 Score=64.96 Aligned_cols=78 Identities=17% Similarity=0.141 Sum_probs=51.6
Q ss_pred eeCCChhhHHHHHhhhccccEEEEEEeCCcHHHHHHHHHhcCCCCCcccccccCCcEEEccCC-Cccc----hhhhccCC
Q 004493 261 RLRPAWEDLRSYLTARGRKRFEVYVCTMAERDYALEMWRLLDPESNLINTKELLDRIVCVKSG-SRKS----LFNVFQDG 335 (749)
Q Consensus 261 KLRPgv~ELr~FL~a~~sk~FELyVyTmGtR~YA~eI~rLLDPdg~LFg~~~l~~RIISresg-~~Ks----L~~LFp~g 335 (749)
++-|++ +++..|+ +.+.+.|.|++.+.++..+++- ++...+|+.|+|.++. ..|. +..++...
T Consensus 88 ~~~~~~-e~L~~L~----~~~~l~I~T~~~~~~~~~~l~~-------~~l~~~fd~i~~~~~~~~~KP~p~~~~~~~~~~ 155 (188)
T PRK10725 88 EPLPLI-EVVKAWH----GRRPMAVGTGSESAIAEALLAH-------LGLRRYFDAVVAADDVQHHKPAPDTFLRCAQLM 155 (188)
T ss_pred CCccHH-HHHHHHH----hCCCEEEEcCCchHHHHHHHHh-------CCcHhHceEEEehhhccCCCCChHHHHHHHHHc
Confidence 345764 6455554 3479999999999999999998 4555566789988543 2222 33333322
Q ss_pred CCCCcEEEEEcCCcc
Q 004493 336 TCHPKMALVIDDRLK 350 (749)
Q Consensus 336 ~c~~~mvVIIDDR~d 350 (749)
.+.++-+|+|||+..
T Consensus 156 ~~~~~~~l~igDs~~ 170 (188)
T PRK10725 156 GVQPTQCVVFEDADF 170 (188)
T ss_pred CCCHHHeEEEeccHh
Confidence 256678899999843
No 44
>COG1011 Predicted hydrolase (HAD superfamily) [General function prediction only]
Probab=97.01 E-value=0.0009 Score=64.79 Aligned_cols=80 Identities=18% Similarity=0.191 Sum_probs=52.6
Q ss_pred EeeCCChhhHHHHHhhhccccEEEEEEeCCcHHHHHHHHHhcCCCCCcccccccCCcEEEcc-CCCcc----chhhhccC
Q 004493 260 VRLRPAWEDLRSYLTARGRKRFEVYVCTMAERDYALEMWRLLDPESNLINTKELLDRIVCVK-SGSRK----SLFNVFQD 334 (749)
Q Consensus 260 VKLRPgv~ELr~FL~a~~sk~FELyVyTmGtR~YA~eI~rLLDPdg~LFg~~~l~~RIISre-sg~~K----sL~~LFp~ 334 (749)
++.-|.+.+ +|+ +..++|.|+|.|||.+.++.+.++- .|...+|+.|++.+ -|..| -...++..
T Consensus 98 ~~~~~~~~~---~L~-~l~~~~~l~ilTNg~~~~~~~~l~~-------~gl~~~Fd~v~~s~~~g~~KP~~~~f~~~~~~ 166 (229)
T COG1011 98 LPDYPEALE---ALK-ELGKKYKLGILTNGARPHQERKLRQ-------LGLLDYFDAVFISEDVGVAKPDPEIFEYALEK 166 (229)
T ss_pred CccChhHHH---HHH-HHHhhccEEEEeCCChHHHHHHHHH-------cCChhhhheEEEecccccCCCCcHHHHHHHHH
Confidence 444556655 666 4445599999999999999999988 34444556776653 34333 23333332
Q ss_pred CCCCCcEEEEEcCCcc
Q 004493 335 GTCHPKMALVIDDRLK 350 (749)
Q Consensus 335 g~c~~~mvVIIDDR~d 350 (749)
.+..++-++.|||+..
T Consensus 167 ~g~~p~~~l~VgD~~~ 182 (229)
T COG1011 167 LGVPPEEALFVGDSLE 182 (229)
T ss_pred cCCCcceEEEECCChh
Confidence 2356789999999854
No 45
>PRK13478 phosphonoacetaldehyde hydrolase; Provisional
Probab=96.93 E-value=0.0078 Score=61.31 Aligned_cols=81 Identities=11% Similarity=0.050 Sum_probs=53.3
Q ss_pred EeeCCChhhHHHHHhhhccccEEEEEEeCCcHHHHHHHHHhcCCCCCcccccccCCcEEEccCC-Ccc----chhhhccC
Q 004493 260 VRLRPAWEDLRSYLTARGRKRFEVYVCTMAERDYALEMWRLLDPESNLINTKELLDRIVCVKSG-SRK----SLFNVFQD 334 (749)
Q Consensus 260 VKLRPgv~ELr~FL~a~~sk~FELyVyTmGtR~YA~eI~rLLDPdg~LFg~~~l~~RIISresg-~~K----sL~~LFp~ 334 (749)
+++-||+.+++.+|+ ++-|.+.|.|++.+.++..+++.+.=.+ +| ++.|+|.++. ..| -+...+..
T Consensus 100 ~~~~pg~~elL~~L~---~~g~~l~I~T~~~~~~~~~~l~~~~l~~-~~-----~d~i~~~~~~~~~KP~p~~~~~a~~~ 170 (267)
T PRK13478 100 ATPIPGVLEVIAALR---ARGIKIGSTTGYTREMMDVVVPLAAAQG-YR-----PDHVVTTDDVPAGRPYPWMALKNAIE 170 (267)
T ss_pred CCCCCCHHHHHHHHH---HCCCEEEEEcCCcHHHHHHHHHHHhhcC-CC-----ceEEEcCCcCCCCCCChHHHHHHHHH
Confidence 466799999888887 5679999999999999999988743221 22 2567777542 112 12222211
Q ss_pred CCCC-CcEEEEEcCCc
Q 004493 335 GTCH-PKMALVIDDRL 349 (749)
Q Consensus 335 g~c~-~~mvVIIDDR~ 349 (749)
.... ++-+++|+|+.
T Consensus 171 l~~~~~~e~l~IGDs~ 186 (267)
T PRK13478 171 LGVYDVAACVKVDDTV 186 (267)
T ss_pred cCCCCCcceEEEcCcH
Confidence 1133 47799999986
No 46
>PRK09552 mtnX 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate phosphatase; Reviewed
Probab=96.79 E-value=0.0063 Score=60.24 Aligned_cols=39 Identities=10% Similarity=0.299 Sum_probs=34.4
Q ss_pred EeeCCChhhHHHHHhhhccccEEEEEEeCCcHHHHHHHHHhc
Q 004493 260 VRLRPAWEDLRSYLTARGRKRFEVYVCTMAERDYALEMWRLL 301 (749)
Q Consensus 260 VKLRPgv~ELr~FL~a~~sk~FELyVyTmGtR~YA~eI~rLL 301 (749)
++++||+.+++.+|+ .+-+.+.|.|+|.+.|+..+++.+
T Consensus 73 ~~l~pG~~e~l~~l~---~~g~~~~IvS~~~~~~i~~il~~~ 111 (219)
T PRK09552 73 AEIREGFHEFVQFVK---ENNIPFYVVSGGMDFFVYPLLQGL 111 (219)
T ss_pred CCcCcCHHHHHHHHH---HcCCeEEEECCCcHHHHHHHHHHh
Confidence 578999999888886 577999999999999999999874
No 47
>TIGR02247 HAD-1A3-hyp Epoxide hydrolase N-terminal domain-like phosphatase. These appear to be members of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases by general homology and the conservation of all of the recognized catalytic motifs (although the first motif is unusual in the replacement of the more common aspartate with glycine...). The variable domain is found in between motifs 1 and 2, indicating membership in subfamily I and phylogeny and prediction of the alpha helical nature of the variable domain (by PSI-PRED) indicate membership in subfamily IA.
Probab=96.74 E-value=0.0025 Score=61.84 Aligned_cols=83 Identities=23% Similarity=0.158 Sum_probs=47.0
Q ss_pred EEeeCCChhhHHHHHhhhccccEEEEEEeCCcHHHHHHHHHhcCCCCCcccccccCCcEEEccC-CCcc----chhhhcc
Q 004493 259 LVRLRPAWEDLRSYLTARGRKRFEVYVCTMAERDYALEMWRLLDPESNLINTKELLDRIVCVKS-GSRK----SLFNVFQ 333 (749)
Q Consensus 259 ~VKLRPgv~ELr~FL~a~~sk~FELyVyTmGtR~YA~eI~rLLDPdg~LFg~~~l~~RIISres-g~~K----sL~~LFp 333 (749)
.+++.|++.+++..|+ ++-|.++|.||+...+......++ . ++...+++.|++.++ +..| -+..+..
T Consensus 92 ~~~~~~~~~~~L~~L~---~~g~~l~i~Sn~~~~~~~~~~~~~-~----~~l~~~fd~v~~s~~~~~~KP~p~~~~~~~~ 163 (211)
T TIGR02247 92 NTKLRPSMMAAIKTLR---AKGFKTACITNNFPTDHSAEEALL-P----GDIMALFDAVVESCLEGLRKPDPRIYQLMLE 163 (211)
T ss_pred ccccChhHHHHHHHHH---HCCCeEEEEeCCCCccchhhhHhh-h----hhhHhhCCEEEEeeecCCCCCCHHHHHHHHH
Confidence 4677899999777776 456999999999866522222221 1 122334567776532 2222 1222222
Q ss_pred CCCCCCcEEEEEcCCc
Q 004493 334 DGTCHPKMALVIDDRL 349 (749)
Q Consensus 334 ~g~c~~~mvVIIDDR~ 349 (749)
.....++-+++|||+.
T Consensus 164 ~~g~~~~~~l~i~D~~ 179 (211)
T TIGR02247 164 RLGVAPEECVFLDDLG 179 (211)
T ss_pred HcCCCHHHeEEEcCCH
Confidence 1124566777789974
No 48
>PRK10563 6-phosphogluconate phosphatase; Provisional
Probab=96.72 E-value=0.0015 Score=63.93 Aligned_cols=92 Identities=9% Similarity=0.016 Sum_probs=56.6
Q ss_pred EEeeCCChhhHHHHHhhhccccEEEEEEeCCcHHHHHHHHHhcCCCCCcccccccC-CcEEEcc-CCCcc----chhhhc
Q 004493 259 LVRLRPAWEDLRSYLTARGRKRFEVYVCTMAERDYALEMWRLLDPESNLINTKELL-DRIVCVK-SGSRK----SLFNVF 332 (749)
Q Consensus 259 ~VKLRPgv~ELr~FL~a~~sk~FELyVyTmGtR~YA~eI~rLLDPdg~LFg~~~l~-~RIISre-sg~~K----sL~~LF 332 (749)
.+++.|++.++++.| .+.+.|.||+.+.++..+++. ++...+| +-|+|.+ .+..| -+..++
T Consensus 86 ~~~~~~gv~~~L~~L------~~~~~ivTn~~~~~~~~~l~~-------~~l~~~F~~~v~~~~~~~~~KP~p~~~~~a~ 152 (221)
T PRK10563 86 ELEPIAGANALLESI------TVPMCVVSNGPVSKMQHSLGK-------TGMLHYFPDKLFSGYDIQRWKPDPALMFHAA 152 (221)
T ss_pred cCCcCCCHHHHHHHc------CCCEEEEeCCcHHHHHHHHHh-------cChHHhCcceEeeHHhcCCCCCChHHHHHHH
Confidence 356679999944444 289999999999999998876 3444444 3566653 23222 222222
Q ss_pred cCCCCCCcEEEEEcCCcccCCCCCCCCeEEe
Q 004493 333 QDGTCHPKMALVIDDRLKVWDDKDQPRVHVV 363 (749)
Q Consensus 333 p~g~c~~~mvVIIDDR~dVW~~~~qn~I~vV 363 (749)
......++-+|+|+|+..=.......++.+|
T Consensus 153 ~~~~~~p~~~l~igDs~~di~aA~~aG~~~i 183 (221)
T PRK10563 153 EAMNVNVENCILVDDSSAGAQSGIAAGMEVF 183 (221)
T ss_pred HHcCCCHHHeEEEeCcHhhHHHHHHCCCEEE
Confidence 2222456789999998764444334456543
No 49
>PRK13582 thrH phosphoserine phosphatase; Provisional
Probab=96.61 E-value=0.01 Score=57.15 Aligned_cols=40 Identities=18% Similarity=0.242 Sum_probs=33.2
Q ss_pred EeeCCChhhHHHHHhhhccccEEEEEEeCCcHHHHHHHHHhcCC
Q 004493 260 VRLRPAWEDLRSYLTARGRKRFEVYVCTMAERDYALEMWRLLDP 303 (749)
Q Consensus 260 VKLRPgv~ELr~FL~a~~sk~FELyVyTmGtR~YA~eI~rLLDP 303 (749)
+++.||+.+++.+|+ ++ +.+.|.|++.+.++..+++.++=
T Consensus 67 ~~~~pg~~e~L~~L~---~~-~~~~IvS~~~~~~~~~~l~~~gl 106 (205)
T PRK13582 67 LDPLPGAVEFLDWLR---ER-FQVVILSDTFYEFAGPLMRQLGW 106 (205)
T ss_pred CCCCCCHHHHHHHHH---hc-CCEEEEeCCcHHHHHHHHHHcCC
Confidence 346799999777776 34 89999999999999999888653
No 50
>TIGR03333 salvage_mtnX 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate phosphatase. Members of this family are the methionine salvage enzyme MnxX, a member of the HAD-superfamily hydrolases, subfamily IB (see TIGR01488). Members are found in Bacillus subtilis and related species, paired with MtnW (TIGR03332). In most species that recycle methionine from methylthioadenosine, the single protein MtnC replaces the MtnW/MtnX pair. In B. subtilis, mtnX was first known as ykrX.
Probab=96.60 E-value=0.013 Score=57.92 Aligned_cols=47 Identities=6% Similarity=0.222 Sum_probs=38.7
Q ss_pred EeeCCChhhHHHHHhhhccccEEEEEEeCCcHHHHHHHHHhcCCCCCccc
Q 004493 260 VRLRPAWEDLRSYLTARGRKRFEVYVCTMAERDYALEMWRLLDPESNLIN 309 (749)
Q Consensus 260 VKLRPgv~ELr~FL~a~~sk~FELyVyTmGtR~YA~eI~rLLDPdg~LFg 309 (749)
+++|||+.+++.+|+ ..-+.++|.|.|.+.|++.+++.+.+...++.
T Consensus 69 ~~l~pg~~e~l~~l~---~~g~~~~IvS~~~~~~i~~il~~~~~~~~i~~ 115 (214)
T TIGR03333 69 AEIREGFREFVAFIN---EHGIPFYVISGGMDFFVYPLLEGIVEKDRIYC 115 (214)
T ss_pred CcccccHHHHHHHHH---HCCCeEEEECCCcHHHHHHHHHhhCCcccEEe
Confidence 578999999888886 56799999999999999999998765444444
No 51
>TIGR01533 lipo_e_P4 5'-nucleotidase, lipoprotein e(P4) family. which in turn belongs to the haloacid dehalogenase (HAD) superfamily of aspartate-dependent hydrolases. Members are found on the outer membrane of Gram-negative bacteria and the cytoplasmic membrane of Gram-positive bacteria. Most members have classic lipoprotein signal sequences. A critical role of this 5'-nucleotidase in Haemophilus influenzae is the degradation of external riboside in order to allow transport into the cell. An earlier suggested role in hemin transport is no longer current. This enzyme may also have other physiologically significant roles.
Probab=96.40 E-value=0.017 Score=61.00 Aligned_cols=77 Identities=14% Similarity=0.100 Sum_probs=48.3
Q ss_pred CCChhhHHHHHhhhccccEEEEEEeCCcHHHHHHHHHhcCCCCCcccccccCCcEEEccCCCccchh--hhccCCCCCCc
Q 004493 263 RPAWEDLRSYLTARGRKRFEVYVCTMAERDYALEMWRLLDPESNLINTKELLDRIVCVKSGSRKSLF--NVFQDGTCHPK 340 (749)
Q Consensus 263 RPgv~ELr~FL~a~~sk~FELyVyTmGtR~YA~eI~rLLDPdg~LFg~~~l~~RIISresg~~KsL~--~LFp~g~c~~~ 340 (749)
-||..+++.+|. ++-..++|.|+..+.+.....+.|.-.|--. ...+.|+.+++...|... .|-. .-.
T Consensus 120 ipGA~e~L~~L~---~~G~~v~iVTnR~~~~~~~T~~~Lkk~Gi~~---~~~d~lllr~~~~~K~~rr~~I~~----~y~ 189 (266)
T TIGR01533 120 VAGALDFLNYAN---SKGVKIFYVSNRSEKEKAATLKNLKRFGFPQ---ADEEHLLLKKDKSSKESRRQKVQK----DYE 189 (266)
T ss_pred CccHHHHHHHHH---HCCCeEEEEeCCCcchHHHHHHHHHHcCcCC---CCcceEEeCCCCCCcHHHHHHHHh----cCC
Confidence 389999777776 5678899999988777665555554333211 122678888654434322 2222 246
Q ss_pred EEEEEcCCc
Q 004493 341 MALVIDDRL 349 (749)
Q Consensus 341 mvVIIDDR~ 349 (749)
.++.|+|+.
T Consensus 190 Ivl~vGD~~ 198 (266)
T TIGR01533 190 IVLLFGDNL 198 (266)
T ss_pred EEEEECCCH
Confidence 789999983
No 52
>PHA02597 30.2 hypothetical protein; Provisional
Probab=96.33 E-value=0.0079 Score=57.98 Aligned_cols=83 Identities=10% Similarity=0.099 Sum_probs=49.6
Q ss_pred EEeeCCChhhHHHHHhhhccccEEEEEEeCCcHHHHHHHHHhcCCCCCcccccccCCcEEEccCCCcc--chhhhccCCC
Q 004493 259 LVRLRPAWEDLRSYLTARGRKRFEVYVCTMAERDYALEMWRLLDPESNLINTKELLDRIVCVKSGSRK--SLFNVFQDGT 336 (749)
Q Consensus 259 ~VKLRPgv~ELr~FL~a~~sk~FELyVyTmGtR~YA~eI~rLLDPdg~LFg~~~l~~RIISresg~~K--sL~~LFp~g~ 336 (749)
.+++.||+.+++..|+ +.|.+++.|++.......+.+.+.-. .+|. .+++.|++.++...| -+..+...-
T Consensus 72 ~~~~~pG~~e~L~~L~----~~~~~~i~Tn~~~~~~~~~~~~~~l~-~~f~--~~f~~i~~~~~~~~kp~~~~~a~~~~- 143 (197)
T PHA02597 72 YLSAYDDALDVINKLK----EDYDFVAVTALGDSIDALLNRQFNLN-ALFP--GAFSEVLMCGHDESKEKLFIKAKEKY- 143 (197)
T ss_pred hccCCCCHHHHHHHHH----hcCCEEEEeCCccchhHHHHhhCCHH-HhCC--CcccEEEEeccCcccHHHHHHHHHHh-
Confidence 3567899999777775 33668888998776555555555322 4443 144567776554222 222222211
Q ss_pred CCCcEEEEEcCCcc
Q 004493 337 CHPKMALVIDDRLK 350 (749)
Q Consensus 337 c~~~mvVIIDDR~d 350 (749)
+++-+|+|||+..
T Consensus 144 -~~~~~v~vgDs~~ 156 (197)
T PHA02597 144 -GDRVVCFVDDLAH 156 (197)
T ss_pred -CCCcEEEeCCCHH
Confidence 1567999999865
No 53
>PHA03398 viral phosphatase superfamily protein; Provisional
Probab=96.26 E-value=0.011 Score=63.70 Aligned_cols=104 Identities=17% Similarity=0.247 Sum_probs=63.8
Q ss_pred eC-CChhhHHHHHhhhccccEEEEEEeCCcHHHHHHHHHhcCCCCCcccccccCCcEEEccCCCccchhhhccCCCCCCc
Q 004493 262 LR-PAWEDLRSYLTARGRKRFEVYVCTMAERDYALEMWRLLDPESNLINTKELLDRIVCVKSGSRKSLFNVFQDGTCHPK 340 (749)
Q Consensus 262 LR-Pgv~ELr~FL~a~~sk~FELyVyTmGtR~YA~eI~rLLDPdg~LFg~~~l~~RIISresg~~KsL~~LFp~g~c~~~ 340 (749)
+| |++.+++..|+ ++-+-+.|+|+|.|.+|..+++. ++...+++-|+|-++...|. +
T Consensus 148 irdp~V~EtL~eLk---ekGikLaIvTNg~Re~v~~~Le~-------lgL~~yFDvII~~g~i~~k~------------~ 205 (303)
T PHA03398 148 IRDPFVYDSLDELK---ERGCVLVLWSYGNREHVVHSLKE-------TKLEGYFDIIICGGRKAGEY------------S 205 (303)
T ss_pred cCChhHHHHHHHHH---HCCCEEEEEcCCChHHHHHHHHH-------cCCCccccEEEECCCccccc------------c
Confidence 45 78988777776 56799999999999999999998 44444555677765432222 2
Q ss_pred EEEEEcCCcccCCCCCCCCeEEecccCCCCCchh---hhcccCchHHHHHHHHhhccccchhch
Q 004493 341 MALVIDDRLKVWDDKDQPRVHVVPAFAPYYAPQA---EANNAIPVLCVARNIACNVRGGFFKEF 401 (749)
Q Consensus 341 mvVIIDDR~dVW~~~~qn~I~vV~~Y~pf~~~q~---E~~~~~p~L~~al~vL~~Vh~~FFk~f 401 (749)
.-+++|++.+ .+.+..+| +.+.. ..-+ .| -+++..|.+.-=.|||.+
T Consensus 206 ~~~~~d~~~~--------~~~~~~~f---~~d~~~~~~lPK-Sp--rvVl~yL~~~gvn~~Kti 255 (303)
T PHA03398 206 RRVIVDNKYK--------MVFVKKPF---YLDVTDVKNLPK-SP--RVVLWYLRKKGVNYFKTI 255 (303)
T ss_pred cceeecccce--------eEEecCce---eEeCCcccCCCC-CC--eehHHHHHHcCcceeccE
Confidence 4556666533 34444343 22222 2222 22 446777777655677754
No 54
>PRK09456 ?-D-glucose-1-phosphatase; Provisional
Probab=96.13 E-value=0.02 Score=55.71 Aligned_cols=82 Identities=22% Similarity=0.180 Sum_probs=49.7
Q ss_pred EEeeCCChhhHHHHHhhhccccEEEEEEeCCcHHHHHHHHHhcCCCCCcccccccCCcEEEccC-CCccc----hhhhcc
Q 004493 259 LVRLRPAWEDLRSYLTARGRKRFEVYVCTMAERDYALEMWRLLDPESNLINTKELLDRIVCVKS-GSRKS----LFNVFQ 333 (749)
Q Consensus 259 ~VKLRPgv~ELr~FL~a~~sk~FELyVyTmGtR~YA~eI~rLLDPdg~LFg~~~l~~RIISres-g~~Ks----L~~LFp 333 (749)
+.++.|++.++++.|+ ++-|.++|.||+.+.....+... +.+...+++.|++.++ +..|. ...+..
T Consensus 82 ~~~~~~g~~e~L~~l~---~~g~~~~i~Sn~~~~~~~~~~~~------~~~l~~~fd~v~~s~~~~~~KP~p~~~~~~~~ 152 (199)
T PRK09456 82 FVALRPEVIAIMHKLR---EQGHRVVVLSNTNRLHTTFWPEE------YPEVRAAADHIYLSQDLGMRKPEARIYQHVLQ 152 (199)
T ss_pred HhccCHHHHHHHHHHH---hCCCcEEEEcCCchhhHHHHHhh------chhHHHhcCEEEEecccCCCCCCHHHHHHHHH
Confidence 4567899999777776 45699999999998876544322 1122334567776532 22111 111111
Q ss_pred CCCCCCcEEEEEcCCc
Q 004493 334 DGTCHPKMALVIDDRL 349 (749)
Q Consensus 334 ~g~c~~~mvVIIDDR~ 349 (749)
.....++-+++|||+.
T Consensus 153 ~~~~~p~~~l~vgD~~ 168 (199)
T PRK09456 153 AEGFSAADAVFFDDNA 168 (199)
T ss_pred HcCCChhHeEEeCCCH
Confidence 1125678899999985
No 55
>TIGR01684 viral_ppase viral phosphatase. These proteins also include an N-terminal domain (ca. 125 aas) that is unique to this clade.
Probab=96.07 E-value=0.01 Score=63.91 Aligned_cols=51 Identities=22% Similarity=0.307 Sum_probs=38.9
Q ss_pred eeC-CChhhHHHHHhhhccccEEEEEEeCCcHHHHHHHHHhcCCCCCcccccccCCcEEEcc
Q 004493 261 RLR-PAWEDLRSYLTARGRKRFEVYVCTMAERDYALEMWRLLDPESNLINTKELLDRIVCVK 321 (749)
Q Consensus 261 KLR-Pgv~ELr~FL~a~~sk~FELyVyTmGtR~YA~eI~rLLDPdg~LFg~~~l~~RIISre 321 (749)
++| |++.|++..|+ ++.+-+.|.|.|.|.+|.++++.++ ....|+-|+|-+
T Consensus 145 ~irdPgV~EaL~~Lk---ekGikLaIaTS~~Re~v~~~L~~lG-------Ld~YFdvIIs~G 196 (301)
T TIGR01684 145 RIRDPRIYDSLTELK---KRGCILVLWSYGDRDHVVESMRKVK-------LDRYFDIIISGG 196 (301)
T ss_pred ccCCHHHHHHHHHHH---HCCCEEEEEECCCHHHHHHHHHHcC-------CCcccCEEEECC
Confidence 345 88999777776 5668999999999999999999844 444445777753
No 56
>PRK08238 hypothetical protein; Validated
Probab=95.84 E-value=0.042 Score=62.21 Aligned_cols=78 Identities=14% Similarity=0.133 Sum_probs=52.6
Q ss_pred eeCCChhhHHHHHhhhccccEEEEEEeCCcHHHHHHHHHhcCCCCCcccccccCCcEEEccCC-C----cc--chhhhcc
Q 004493 261 RLRPAWEDLRSYLTARGRKRFEVYVCTMAERDYALEMWRLLDPESNLINTKELLDRIVCVKSG-S----RK--SLFNVFQ 333 (749)
Q Consensus 261 KLRPgv~ELr~FL~a~~sk~FELyVyTmGtR~YA~eI~rLLDPdg~LFg~~~l~~RIISresg-~----~K--sL~~LFp 333 (749)
+++|++.++.+.++ ++-+.+.|.|++.+.|++.+++.+. +++.|++-++. + .| .|...++
T Consensus 72 p~~pga~e~L~~lk---~~G~~v~LaTas~~~~a~~i~~~lG----------lFd~Vigsd~~~~~kg~~K~~~l~~~l~ 138 (479)
T PRK08238 72 PYNEEVLDYLRAER---AAGRKLVLATASDERLAQAVAAHLG----------LFDGVFASDGTTNLKGAAKAAALVEAFG 138 (479)
T ss_pred CCChhHHHHHHHHH---HCCCEEEEEeCCCHHHHHHHHHHcC----------CCCEEEeCCCccccCCchHHHHHHHHhC
Confidence 46789988555554 6779999999999999999999962 24678877543 1 12 2333343
Q ss_pred CCCCCCcEEEEEcCCc---ccCCCCC
Q 004493 334 DGTCHPKMALVIDDRL---KVWDDKD 356 (749)
Q Consensus 334 ~g~c~~~mvVIIDDR~---dVW~~~~ 356 (749)
++.++.+.|+. .+|...+
T Consensus 139 -----~~~~~yvGDS~~Dlp~~~~A~ 159 (479)
T PRK08238 139 -----ERGFDYAGNSAADLPVWAAAR 159 (479)
T ss_pred -----ccCeeEecCCHHHHHHHHhCC
Confidence 23345667776 4787764
No 57
>COG0560 SerB Phosphoserine phosphatase [Amino acid transport and metabolism]
Probab=95.83 E-value=0.036 Score=56.22 Aligned_cols=86 Identities=19% Similarity=0.134 Sum_probs=56.2
Q ss_pred EeeCCChhhHHHHHhhhccccEEEEEEeCCcHHHHHHHHHhcCCCCCccc---cc-c-cCCcEEEc---cCCCccchhhh
Q 004493 260 VRLRPAWEDLRSYLTARGRKRFEVYVCTMAERDYALEMWRLLDPESNLIN---TK-E-LLDRIVCV---KSGSRKSLFNV 331 (749)
Q Consensus 260 VKLRPgv~ELr~FL~a~~sk~FELyVyTmGtR~YA~eI~rLLDPdg~LFg---~~-~-l~~RIISr---esg~~KsL~~L 331 (749)
++++|+.++|..+|+ +.-+.+.|.|.|-.-|+..|++.|.-+..+=+ .. + +..+|+.. ..+..+.|.++
T Consensus 76 ~~l~~ga~elv~~lk---~~G~~v~iiSgg~~~lv~~ia~~lg~d~~~an~l~~~dG~ltG~v~g~~~~~~~K~~~l~~~ 152 (212)
T COG0560 76 LRLTPGAEELVAALK---AAGAKVVIISGGFTFLVEPIAERLGIDYVVANELEIDDGKLTGRVVGPICDGEGKAKALREL 152 (212)
T ss_pred CcCCccHHHHHHHHH---HCCCEEEEEcCChHHHHHHHHHHhCCchheeeEEEEeCCEEeceeeeeecCcchHHHHHHHH
Confidence 788999999999998 77899999999999999999999876533211 00 0 11344322 22333556666
Q ss_pred ccCCCCCCcEEEEEcCC
Q 004493 332 FQDGTCHPKMALVIDDR 348 (749)
Q Consensus 332 Fp~g~c~~~mvVIIDDR 348 (749)
+.......+-++-+-|+
T Consensus 153 ~~~~g~~~~~~~a~gDs 169 (212)
T COG0560 153 AAELGIPLEETVAYGDS 169 (212)
T ss_pred HHHcCCCHHHeEEEcCc
Confidence 55322334566666665
No 58
>TIGR02137 HSK-PSP phosphoserine phosphatase/homoserine phosphotransferase bifunctional protein. This enzyme is a member of the haloacid dehalogenase (HAD) superfamily, specifically part of subfamily IB by virtue of the presence of an alpha helical domain in between motifs I and II of the HAD domain . The closest homologs to this family are monofunctional phosphoserine phosphatases (TIGR00338).
Probab=95.74 E-value=0.027 Score=56.45 Aligned_cols=44 Identities=16% Similarity=0.249 Sum_probs=34.8
Q ss_pred eeCCChhhHHHHHhhhccccEEEEEEeCCcHHHHHHHHHhcCCCCCccc
Q 004493 261 RLRPAWEDLRSYLTARGRKRFEVYVCTMAERDYALEMWRLLDPESNLIN 309 (749)
Q Consensus 261 KLRPgv~ELr~FL~a~~sk~FELyVyTmGtR~YA~eI~rLLDPdg~LFg 309 (749)
+++|++.+++..|+ +.+.+.|.|.|.+.|+..+++.|.=+ .+|.
T Consensus 68 ~l~pga~ell~~lk----~~~~~~IVS~~~~~~~~~il~~lgi~-~~~a 111 (203)
T TIGR02137 68 KPLEGAVEFVDWLR----ERFQVVILSDTFYEFSQPLMRQLGFP-TLLC 111 (203)
T ss_pred CCCccHHHHHHHHH----hCCeEEEEeCChHHHHHHHHHHcCCc-hhhc
Confidence 56899999777775 23699999999999999999996644 3444
No 59
>COG4996 Predicted phosphatase [General function prediction only]
Probab=95.69 E-value=0.022 Score=55.86 Aligned_cols=94 Identities=18% Similarity=0.244 Sum_probs=63.2
Q ss_pred EEeeCCChhhHHHHHhhhccccEEEEEEeCCcHHHHHHHHHhcCCCCCcccccccCCcEEEccCC-CccchhhhccC---
Q 004493 259 LVRLRPAWEDLRSYLTARGRKRFEVYVCTMAERDYALEMWRLLDPESNLINTKELLDRIVCVKSG-SRKSLFNVFQD--- 334 (749)
Q Consensus 259 ~VKLRPgv~ELr~FL~a~~sk~FELyVyTmGtR~YA~eI~rLLDPdg~LFg~~~l~~RIISresg-~~KsL~~LFp~--- 334 (749)
-|+|+|++.+++..++ +.-|-+-.+|=+-.+-|.+.++.||-. .||. =++--... .-+-|..++..
T Consensus 39 ev~L~~~v~~~l~war---nsG~i~~~~sWN~~~kA~~aLral~~~-~yFh------y~ViePhP~K~~ML~~llr~i~~ 108 (164)
T COG4996 39 EVHLFPDVKETLKWAR---NSGYILGLASWNFEDKAIKALRALDLL-QYFH------YIVIEPHPYKFLMLSQLLREINT 108 (164)
T ss_pred EEEEcHHHHHHHHHHH---hCCcEEEEeecCchHHHHHHHHHhchh-hhEE------EEEecCCChhHHHHHHHHHHHHH
Confidence 5789999999666655 667889999999999999999997755 3454 22221111 22345544431
Q ss_pred ---CCCCCcEEEEEcCCc----ccCCCCCCCCeEEec
Q 004493 335 ---GTCHPKMALVIDDRL----KVWDDKDQPRVHVVP 364 (749)
Q Consensus 335 ---g~c~~~mvVIIDDR~----dVW~~~~qn~I~vV~ 364 (749)
.--.|+-+|.+|||. ++|++- .+|..++
T Consensus 109 er~~~ikP~~Ivy~DDR~iH~~~Iwe~~--G~V~~~~ 143 (164)
T COG4996 109 ERNQKIKPSEIVYLDDRRIHFGNIWEYL--GNVKCLE 143 (164)
T ss_pred hhccccCcceEEEEecccccHHHHHHhc--CCeeeeE
Confidence 113568899999996 678875 4665443
No 60
>PRK10748 flavin mononucleotide phosphatase; Provisional
Probab=95.69 E-value=0.016 Score=58.30 Aligned_cols=85 Identities=12% Similarity=0.068 Sum_probs=51.7
Q ss_pred EeeCCChhhHHHHHhhhccccEEEEEEeCCcHHHHHHHHHhcCCCCCcccccccCCcEEEccCC-Cccc----hhhhccC
Q 004493 260 VRLRPAWEDLRSYLTARGRKRFEVYVCTMAERDYALEMWRLLDPESNLINTKELLDRIVCVKSG-SRKS----LFNVFQD 334 (749)
Q Consensus 260 VKLRPgv~ELr~FL~a~~sk~FELyVyTmGtR~YA~eI~rLLDPdg~LFg~~~l~~RIISresg-~~Ks----L~~LFp~ 334 (749)
+++-|++.+++..|+ +.|-+.|.|||+..- ..++...+|+.|++.++. ..|- +..++..
T Consensus 112 ~~~~~gv~~~L~~L~----~~~~l~i~Tn~~~~~------------~~~gl~~~fd~i~~~~~~~~~KP~p~~~~~a~~~ 175 (238)
T PRK10748 112 IDVPQATHDTLKQLA----KKWPLVAITNGNAQP------------ELFGLGDYFEFVLRAGPHGRSKPFSDMYHLAAEK 175 (238)
T ss_pred CCCCccHHHHHHHHH----cCCCEEEEECCCchH------------HHCCcHHhhceeEecccCCcCCCcHHHHHHHHHH
Confidence 456689999555554 458999999998751 235666677788876432 2221 2222221
Q ss_pred CCCCCcEEEEEcCC--cccCCCCCCCCeE
Q 004493 335 GTCHPKMALVIDDR--LKVWDDKDQPRVH 361 (749)
Q Consensus 335 g~c~~~mvVIIDDR--~dVW~~~~qn~I~ 361 (749)
..+.++-+|+|.|+ .||-..+. .++.
T Consensus 176 ~~~~~~~~~~VGD~~~~Di~~A~~-aG~~ 203 (238)
T PRK10748 176 LNVPIGEILHVGDDLTTDVAGAIR-CGMQ 203 (238)
T ss_pred cCCChhHEEEEcCCcHHHHHHHHH-CCCe
Confidence 12567778999887 58866543 3443
No 61
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=95.60 E-value=0.046 Score=67.12 Aligned_cols=80 Identities=19% Similarity=0.099 Sum_probs=53.5
Q ss_pred eCCChhhHHHHHhhhccccEEEEEEeCCcHHHHHHHHHhcCCCCCcccccccCCcEEEccCC-Cccc----hhhhccCCC
Q 004493 262 LRPAWEDLRSYLTARGRKRFEVYVCTMAERDYALEMWRLLDPESNLINTKELLDRIVCVKSG-SRKS----LFNVFQDGT 336 (749)
Q Consensus 262 LRPgv~ELr~FL~a~~sk~FELyVyTmGtR~YA~eI~rLLDPdg~LFg~~~l~~RIISresg-~~Ks----L~~LFp~g~ 336 (749)
+-||+.+++++|+ ++-|.+.|.|++.+.++..+++-++=.. .+|+.|++.++. ..|. +..+.....
T Consensus 162 ~~pG~~elL~~Lk---~~G~~l~IvSn~~~~~~~~~L~~~gl~~------~~Fd~iv~~~~~~~~KP~Pe~~~~a~~~lg 232 (1057)
T PLN02919 162 GFPGALELITQCK---NKGLKVAVASSADRIKVDANLAAAGLPL------SMFDAIVSADAFENLKPAPDIFLAAAKILG 232 (1057)
T ss_pred cCccHHHHHHHHH---hCCCeEEEEeCCcHHHHHHHHHHcCCCh------hHCCEEEECcccccCCCCHHHHHHHHHHcC
Confidence 5699999888887 5679999999999999999988743211 345678877543 1121 111111111
Q ss_pred CCCcEEEEEcCCcc
Q 004493 337 CHPKMALVIDDRLK 350 (749)
Q Consensus 337 c~~~mvVIIDDR~d 350 (749)
..++-+|+|+|+..
T Consensus 233 v~p~e~v~IgDs~~ 246 (1057)
T PLN02919 233 VPTSECVVIEDALA 246 (1057)
T ss_pred cCcccEEEEcCCHH
Confidence 45677899999853
No 62
>TIGR01672 AphA HAD superfamily (subfamily IIIB) phosphatase, TIGR01672. Supporting evidence for the inclusion in the HAD superfamily, whose phosphatase members are magnesium dependent, is the inhibition by EDTA and calcium ions, and stimulation by magnesium ion.
Probab=95.53 E-value=0.04 Score=57.18 Aligned_cols=72 Identities=8% Similarity=0.020 Sum_probs=44.2
Q ss_pred CChhhHHHHHhhhccccEEEEEEeCC----cHHHHHHHHHhcCCCCCcccccccCCcEEEccCC-Ccc-chhhhccCCCC
Q 004493 264 PAWEDLRSYLTARGRKRFEVYVCTMA----ERDYALEMWRLLDPESNLINTKELLDRIVCVKSG-SRK-SLFNVFQDGTC 337 (749)
Q Consensus 264 Pgv~ELr~FL~a~~sk~FELyVyTmG----tR~YA~eI~rLLDPdg~LFg~~~l~~RIISresg-~~K-sL~~LFp~g~c 337 (749)
|++.+++.+|. .+-+.++|+|+. .+.++..+++.+ +....+.-|++.++. ..| +-...+.
T Consensus 117 ~~a~elL~~l~---~~G~~i~iVTnr~~~k~~~~a~~ll~~l-------Gi~~~f~~i~~~d~~~~~Kp~~~~~l~---- 182 (237)
T TIGR01672 117 EVARQLIDMHQ---RRGDAIFFVTGRTPGKTDTVSKTLAKNF-------HIPAMNPVIFAGDKPGQYQYTKTQWIQ---- 182 (237)
T ss_pred hHHHHHHHHHH---HCCCEEEEEeCCCCCcCHHHHHHHHHHh-------CCchheeEEECCCCCCCCCCCHHHHHH----
Confidence 44889777776 677999999998 677999999874 333333445554432 111 1112222
Q ss_pred CCcEEEEEcCCc
Q 004493 338 HPKMALVIDDRL 349 (749)
Q Consensus 338 ~~~mvVIIDDR~ 349 (749)
....++.|.|+.
T Consensus 183 ~~~i~i~vGDs~ 194 (237)
T TIGR01672 183 DKNIRIHYGDSD 194 (237)
T ss_pred hCCCeEEEeCCH
Confidence 234467787774
No 63
>COG0637 Predicted phosphatase/phosphohexomutase [General function prediction only]
Probab=95.47 E-value=0.014 Score=58.66 Aligned_cols=76 Identities=16% Similarity=0.160 Sum_probs=51.7
Q ss_pred EeeCCChhhHHHHHhhhccccEEEEEEeCCcHHHHHHHHHhcCCCCCcccccccCCcEEEccCC---------Cccchhh
Q 004493 260 VRLRPAWEDLRSYLTARGRKRFEVYVCTMAERDYALEMWRLLDPESNLINTKELLDRIVCVKSG---------SRKSLFN 330 (749)
Q Consensus 260 VKLRPgv~ELr~FL~a~~sk~FELyVyTmGtR~YA~eI~rLLDPdg~LFg~~~l~~RIISresg---------~~KsL~~ 330 (749)
+++.||+.+++..|+ ++..-+-+.|.+.|.-+..+++. .+...+|+=+++.++. +.+...+
T Consensus 85 ~~~~pGv~~~l~~L~---~~~i~~avaS~s~~~~~~~~L~~-------~gl~~~f~~~v~~~dv~~~KP~Pd~yL~Aa~~ 154 (221)
T COG0637 85 LKPIPGVVELLEQLK---ARGIPLAVASSSPRRAAERVLAR-------LGLLDYFDVIVTADDVARGKPAPDIYLLAAER 154 (221)
T ss_pred CCCCccHHHHHHHHH---hcCCcEEEecCChHHHHHHHHHH-------ccChhhcchhccHHHHhcCCCCCHHHHHHHHH
Confidence 456799999777776 33388999999999999998877 3333444455554221 3355555
Q ss_pred hccCCCCCCcEEEEEcCCc
Q 004493 331 VFQDGTCHPKMALVIDDRL 349 (749)
Q Consensus 331 LFp~g~c~~~mvVIIDDR~ 349 (749)
+- ..++-+|+|+|+.
T Consensus 155 Lg----v~P~~CvviEDs~ 169 (221)
T COG0637 155 LG----VDPEECVVVEDSP 169 (221)
T ss_pred cC----CChHHeEEEecch
Confidence 31 3578899999984
No 64
>PF06888 Put_Phosphatase: Putative Phosphatase; InterPro: IPR016965 This group represents phosphatases related to PHOSPHO1 and PHOSPHO2 []. It includes plant phosphatases with homology to the haloacid dehalogenase (HAD) superfamily [, ]. PHOSPHO1 is a phosphoethanolamine/phosphocholine phosphatase [], while PHOSPHO2 has high activity toward pyridoxal 5'-phosphate (PLP), and it is active at much lower level toward pyrophosphate, phosphoethanolamine (PEA)and phosphocholine (PCho) []. ; GO: 0016791 phosphatase activity
Probab=95.22 E-value=0.11 Score=54.15 Aligned_cols=38 Identities=13% Similarity=0.376 Sum_probs=32.9
Q ss_pred eCCChhhHHHHHhhhccccEEEEEEeCCcHHHHHHHHHh
Q 004493 262 LRPAWEDLRSYLTARGRKRFEVYVCTMAERDYALEMWRL 300 (749)
Q Consensus 262 LRPgv~ELr~FL~a~~sk~FELyVyTmGtR~YA~eI~rL 300 (749)
+.||..++.+||. +....||++|-..|+--|-+.|++.
T Consensus 72 ~~pgm~~~l~~l~-~~~~~~~~~IiSDaNs~fI~~iL~~ 109 (234)
T PF06888_consen 72 IDPGMKELLRFLA-KNQRGFDLIIISDANSFFIETILEH 109 (234)
T ss_pred CCccHHHHHHHHH-hcCCCceEEEEeCCcHhHHHHHHHh
Confidence 4588899888885 4467999999999999999999988
No 65
>TIGR01490 HAD-SF-IB-hyp1 HAD-superfamily subfamily IB hydrolase, TIGR01490. A subset of these sequences, including the Caulobacter crescentus CicA protein, cluster together and may represent a separate equivalog.
Probab=95.19 E-value=0.0095 Score=57.23 Aligned_cols=46 Identities=17% Similarity=0.185 Sum_probs=36.9
Q ss_pred EeeCCChhhHHHHHhhhccccEEEEEEeCCcHHHHHHHHHhcCCCCCccc
Q 004493 260 VRLRPAWEDLRSYLTARGRKRFEVYVCTMAERDYALEMWRLLDPESNLIN 309 (749)
Q Consensus 260 VKLRPgv~ELr~FL~a~~sk~FELyVyTmGtR~YA~eI~rLLDPdg~LFg 309 (749)
.+++|++.+++..|+ ++-+.++|.|++.+.|+..+++.|.=+ .+|+
T Consensus 86 ~~~~~~~~~~l~~l~---~~g~~v~ivS~s~~~~v~~~~~~lg~~-~~~~ 131 (202)
T TIGR01490 86 SILYPEARDLIRWHK---AEGHTIVLVSASLTILVKPLARILGID-NAIG 131 (202)
T ss_pred HhccHHHHHHHHHHH---HCCCEEEEEeCCcHHHHHHHHHHcCCc-ceEe
Confidence 357899999777775 566899999999999999999987644 3566
No 66
>TIGR01686 FkbH FkbH-like domain. The C-terminal portion of this domain is unique to this family (by BLAST).
Probab=95.16 E-value=0.033 Score=58.99 Aligned_cols=81 Identities=16% Similarity=0.142 Sum_probs=48.0
Q ss_pred CCChhhHHHHHhhhccccEEEEEEeCCcHHHHHHHHHhcCCCCCcccccccCCcEEEccCCCccchhhhccCCCCCCcEE
Q 004493 263 RPAWEDLRSYLTARGRKRFEVYVCTMAERDYALEMWRLLDPESNLINTKELLDRIVCVKSGSRKSLFNVFQDGTCHPKMA 342 (749)
Q Consensus 263 RPgv~ELr~FL~a~~sk~FELyVyTmGtR~YA~eI~rLLDPdg~LFg~~~l~~RIISresg~~KsL~~LFp~g~c~~~mv 342 (749)
.|++.+++..|+ .+-+-+.|+|++.+..|.++++. ....++....|.-+.+-.......+..+.......++-+
T Consensus 33 ~~~~~e~L~~L~---~~Gi~lai~S~n~~~~a~~~l~~---~~~~~~~~~~f~~~~~~~~pk~~~i~~~~~~l~i~~~~~ 106 (320)
T TIGR01686 33 HKTLQEKIKTLK---KQGFLLALASKNDEDDAKKVFER---RKDFILQAEDFDARSINWGPKSESLRKIAKKLNLGTDSF 106 (320)
T ss_pred HHHHHHHHHHHH---hCCCEEEEEcCCCHHHHHHHHHh---CccccCcHHHeeEEEEecCchHHHHHHHHHHhCCCcCcE
Confidence 467888555665 46689999999999999998875 111233223333333322222233333333222466789
Q ss_pred EEEcCCc
Q 004493 343 LVIDDRL 349 (749)
Q Consensus 343 VIIDDR~ 349 (749)
|+|||+.
T Consensus 107 vfidD~~ 113 (320)
T TIGR01686 107 LFIDDNP 113 (320)
T ss_pred EEECCCH
Confidence 9999964
No 67
>PRK11133 serB phosphoserine phosphatase; Provisional
Probab=95.01 E-value=0.096 Score=56.45 Aligned_cols=41 Identities=17% Similarity=0.112 Sum_probs=34.5
Q ss_pred EeeCCChhhHHHHHhhhccccEEEEEEeCCcHHHHHHHHHhcCC
Q 004493 260 VRLRPAWEDLRSYLTARGRKRFEVYVCTMAERDYALEMWRLLDP 303 (749)
Q Consensus 260 VKLRPgv~ELr~FL~a~~sk~FELyVyTmGtR~YA~eI~rLLDP 303 (749)
++++||+++++..|+ +.-|.+.|+|.|...+++.+.+.|+=
T Consensus 180 l~l~pGa~elL~~Lk---~~G~~~aIvSgg~~~~~~~l~~~Lgl 220 (322)
T PRK11133 180 LPLMPGLTELVLKLQ---ALGWKVAIASGGFTYFADYLRDKLRL 220 (322)
T ss_pred CCCChhHHHHHHHHH---HcCCEEEEEECCcchhHHHHHHHcCC
Confidence 457899999888887 56689999999999999998887653
No 68
>KOG3109 consensus Haloacid dehalogenase-like hydrolase [General function prediction only]
Probab=94.91 E-value=0.033 Score=58.30 Aligned_cols=73 Identities=19% Similarity=0.324 Sum_probs=56.0
Q ss_pred HHHHHhhhccccEEEEEEeCCcHHHHHHHHHhcCCCCCcccccccCCcEEEccCC-----------CccchhhhccCC-C
Q 004493 269 LRSYLTARGRKRFEVYVCTMAERDYALEMWRLLDPESNLINTKELLDRIVCVKSG-----------SRKSLFNVFQDG-T 336 (749)
Q Consensus 269 Lr~FL~a~~sk~FELyVyTmGtR~YA~eI~rLLDPdg~LFg~~~l~~RIISresg-----------~~KsL~~LFp~g-~ 336 (749)
||++|- .+.+++ .++||||-|..|.++++. +|.+++|+.|+|-+.. ..+..+.++.-. .
T Consensus 105 LRnlLL-~l~~r~-k~~FTNa~k~HA~r~Lk~-------LGieDcFegii~~e~~np~~~~~vcKP~~~afE~a~k~agi 175 (244)
T KOG3109|consen 105 LRNLLL-SLKKRR-KWIFTNAYKVHAIRILKK-------LGIEDCFEGIICFETLNPIEKTVVCKPSEEAFEKAMKVAGI 175 (244)
T ss_pred HHHHHH-hCcccc-EEEecCCcHHHHHHHHHH-------hChHHhccceeEeeccCCCCCceeecCCHHHHHHHHHHhCC
Confidence 566888 777877 999999999999999999 8999999999998532 224444444322 2
Q ss_pred CCCcEEEEEcCCcc
Q 004493 337 CHPKMALVIDDRLK 350 (749)
Q Consensus 337 c~~~mvVIIDDR~d 350 (749)
.++..++++||+..
T Consensus 176 ~~p~~t~FfDDS~~ 189 (244)
T KOG3109|consen 176 DSPRNTYFFDDSER 189 (244)
T ss_pred CCcCceEEEcCchh
Confidence 34789999999854
No 69
>TIGR01681 HAD-SF-IIIC HAD-superfamily phosphatase, subfamily IIIC. No member of this subfamily is characterized with respect to function, however the MDP-1 protein is a characterized phosphatase. All of the characterized enzymes within subfamily III are phosphatases, and all of the active site residues characteristic of HAD-superfamily phosphatases are present in subfamily IIIC.
Probab=94.60 E-value=0.03 Score=51.88 Aligned_cols=86 Identities=16% Similarity=0.179 Sum_probs=55.6
Q ss_pred eeCCChhhHHHHHhhhccccEEEEEEeCC-cHHHHHHHHHhcCCCCCcccccccCCcEEEccC-CCccchhhhccCCC--
Q 004493 261 RLRPAWEDLRSYLTARGRKRFEVYVCTMA-ERDYALEMWRLLDPESNLINTKELLDRIVCVKS-GSRKSLFNVFQDGT-- 336 (749)
Q Consensus 261 KLRPgv~ELr~FL~a~~sk~FELyVyTmG-tR~YA~eI~rLLDPdg~LFg~~~l~~RIISres-g~~KsL~~LFp~g~-- 336 (749)
++.||+.+++..|+ ++-+.+.|.|++ .+.|+..+++.+.+-+.+.+...+|+-+++-+. ...+.+..+.....
T Consensus 29 ~~~~gv~e~L~~Lk---~~g~~l~i~Sn~~~~~~~~~~l~~~~~~~~i~~l~~~f~~~~~~~~~pkp~~~~~a~~~lg~~ 105 (128)
T TIGR01681 29 VTIKEIRDKLQTLK---KNGFLLALASYNDDPHVAYELLKIFEDFGIIFPLAEYFDPLTIGYWLPKSPRLVEIALKLNGV 105 (128)
T ss_pred HHHHHHHHHHHHHH---HCCeEEEEEeCCCCHHHHHHHHHhccccccchhhHhhhhhhhhcCCCcHHHHHHHHHHHhcCC
Confidence 56689999888886 567999999999 999999999987642222112344455555422 22222222222222
Q ss_pred CCCcEEEEEcCCc
Q 004493 337 CHPKMALVIDDRL 349 (749)
Q Consensus 337 c~~~mvVIIDDR~ 349 (749)
..++-+++|||+.
T Consensus 106 ~~p~~~l~igDs~ 118 (128)
T TIGR01681 106 LKPKSILFVDDRP 118 (128)
T ss_pred CCcceEEEECCCH
Confidence 4678999999985
No 70
>PRK11590 hypothetical protein; Provisional
Probab=94.53 E-value=0.072 Score=52.88 Aligned_cols=40 Identities=15% Similarity=0.169 Sum_probs=32.5
Q ss_pred EeeCCChhhHH-HHHhhhccccEEEEEEeCCcHHHHHHHHHhcC
Q 004493 260 VRLRPAWEDLR-SYLTARGRKRFEVYVCTMAERDYALEMWRLLD 302 (749)
Q Consensus 260 VKLRPgv~ELr-~FL~a~~sk~FELyVyTmGtR~YA~eI~rLLD 302 (749)
++++|++.+++ ..|+ +.-+.+.|.|++.+.|+..+++.+.
T Consensus 94 ~~~~pga~e~L~~~l~---~~G~~l~IvSas~~~~~~~il~~l~ 134 (211)
T PRK11590 94 VTAFPVVQERLTTYLL---SSDADVWLITGSPQPLVEQVYFDTP 134 (211)
T ss_pred CcCCccHHHHHHHHHH---hCCCEEEEEeCCcHHHHHHHHHHcc
Confidence 46689999955 4554 5789999999999999999998743
No 71
>TIGR01664 DNA-3'-Pase DNA 3'-phosphatase. The central phosphatase domain is a member of the IIIA subfamily (TIGR01662) of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. As is common in this superfamily, the enzyme is magnesium dependent. A difference between this enzyme and other HAD-superfamily phosphatases is in the third conserved catalytic motif which usually contains two conserved aspartate residues believed to be involved in binding the magnesium ion. Here, the second aspartate is usually replaced by an arginine residue which may indicate an interaction with the phosphate backbone of the substrate. Alternatively, there is an additional conserved aspartate downstream of the ususal site which may indicate slightly different fold in this region.
Probab=94.52 E-value=0.11 Score=50.73 Aligned_cols=78 Identities=13% Similarity=0.057 Sum_probs=45.8
Q ss_pred EeeCCChhhHHHHHhhhccccEEEEEEeCCcHH------------HHHHHHHhcCCCCCcccccccCCcEEEccCC-Ccc
Q 004493 260 VRLRPAWEDLRSYLTARGRKRFEVYVCTMAERD------------YALEMWRLLDPESNLINTKELLDRIVCVKSG-SRK 326 (749)
Q Consensus 260 VKLRPgv~ELr~FL~a~~sk~FELyVyTmGtR~------------YA~eI~rLLDPdg~LFg~~~l~~RIISresg-~~K 326 (749)
..+-|++.+++..|+ .+-|.+.|.|++... ++..+++.++- .+ .-+++.+.+ ..|
T Consensus 41 ~~~~pgv~e~L~~Lk---~~G~~l~I~TN~~~~~~~~~~~~~~~~~i~~~l~~~gl---~~------~~ii~~~~~~~~K 108 (166)
T TIGR01664 41 RFLYPEIPAKLQELD---DEGYKIVIFTNQSGIGRGKLSAESFKNKIEAFLEKLKV---PI------QVLAATHAGLYRK 108 (166)
T ss_pred EEecCCHHHHHHHHH---HCCCEEEEEeCCcccccCcccHHHHHHHHHHHHHHcCC---CE------EEEEecCCCCCCC
Confidence 334589999777776 678999999998874 34445555332 11 223333222 112
Q ss_pred ----chhhhccCCC--CCCcEEEEEcCCc
Q 004493 327 ----SLFNVFQDGT--CHPKMALVIDDRL 349 (749)
Q Consensus 327 ----sL~~LFp~g~--c~~~mvVIIDDR~ 349 (749)
.+..+..... ++++-++.|+|+.
T Consensus 109 P~p~~~~~~~~~~~~~~~~~~~v~VGD~~ 137 (166)
T TIGR01664 109 PMTGMWEYLQSQYNSPIKMTRSFYVGDAA 137 (166)
T ss_pred CccHHHHHHHHHcCCCCCchhcEEEECCC
Confidence 2333333222 5677899999986
No 72
>TIGR02254 YjjG/YfnB HAD superfamily (subfamily IA) hydrolase, TIGR02254. This family is a member of the haloacid dehalogenase (HAD) superfamily of hydrolases which are characterized by three conserved sequence motifs. By virtue of an alpha helical domain in-between the first and second conserved motif, this family is a member of subfamily IA (TIGR01549). Most likely, these enzymes are phosphatases.
Probab=94.19 E-value=0.083 Score=51.12 Aligned_cols=79 Identities=23% Similarity=0.283 Sum_probs=55.8
Q ss_pred EeeCCChhhHHHHHhhhccccEEEEEEeCCcHHHHHHHHHhcCCCCCcccccccCCcEEEccC-CC--------ccchhh
Q 004493 260 VRLRPAWEDLRSYLTARGRKRFEVYVCTMAERDYALEMWRLLDPESNLINTKELLDRIVCVKS-GS--------RKSLFN 330 (749)
Q Consensus 260 VKLRPgv~ELr~FL~a~~sk~FELyVyTmGtR~YA~eI~rLLDPdg~LFg~~~l~~RIISres-g~--------~KsL~~ 330 (749)
++++|++.+++..|+ ++ |.+.|.||+.+.++..+++- ++...+++.|++.++ +. .+.+++
T Consensus 96 ~~~~~g~~~~L~~l~---~~-~~~~i~Sn~~~~~~~~~l~~-------~~l~~~fd~i~~~~~~~~~KP~~~~~~~~~~~ 164 (224)
T TIGR02254 96 HQLLPGAFELMENLQ---QK-FRLYIVTNGVRETQYKRLRK-------SGLFPFFDDIFVSEDAGIQKPDKEIFNYALER 164 (224)
T ss_pred CeeCccHHHHHHHHH---hc-CcEEEEeCCchHHHHHHHHH-------CCcHhhcCEEEEcCccCCCCCCHHHHHHHHHH
Confidence 578999999777775 34 99999999999999998877 444456678887643 21 122333
Q ss_pred hccCCCCCCcEEEEEcCCc--ccC
Q 004493 331 VFQDGTCHPKMALVIDDRL--KVW 352 (749)
Q Consensus 331 LFp~g~c~~~mvVIIDDR~--dVW 352 (749)
+.. ..++-+|.|+|+. |+=
T Consensus 165 ~~~---~~~~~~v~igD~~~~di~ 185 (224)
T TIGR02254 165 MPK---FSKEEVLMIGDSLTADIK 185 (224)
T ss_pred hcC---CCchheEEECCCcHHHHH
Confidence 212 5677899999984 553
No 73
>KOG0323 consensus TFIIF-interacting CTD phosphatases, including NLI-interacting factor [Transcription]
Probab=94.09 E-value=0.074 Score=62.35 Aligned_cols=68 Identities=19% Similarity=0.195 Sum_probs=48.9
Q ss_pred cccCchHHHHHHHHhhccccchhchhhhhhhccccccccCcCCCCCCCCCccceeeccccccccCCCCCCCCCCCCchHH
Q 004493 377 NNAIPVLCVARNIACNVRGGFFKEFDEGLLQRIPEISYEDDVKDIPSPPDVSNYLVSEDDAATANGIKDPLSFDGMADAE 456 (749)
Q Consensus 377 ~~~~p~L~~al~vL~~Vh~~FFk~fDe~l~~ri~ev~~e~~~~~~~~~pDV~n~l~~e~~~~~~~g~~~~~~~~gm~~~e 456 (749)
...++.|..++++|.+||..||..+| +.......+||+.++-+.+.+ ++.||.+-++.-+=.+..
T Consensus 394 ~~~D~~L~~~~kvl~~vH~~ff~~~~--------------~~~e~~~~~Dvr~~i~~~~~~-v~~~~~~vfSg~~P~~~~ 458 (635)
T KOG0323|consen 394 SDEDGELANLLKVLKPVHKGFFAKYD--------------EVEETLESPDVRLLIPELRTK-VLKGSQIVFSGLHPTGST 458 (635)
T ss_pred cccchhHHHHhhhhcccchhhhhccc--------------cccccccCCChhhhhhhhhhH-HhhccceeecccccCcCC
Confidence 34456899999999999999999876 224455789999988777766 688888875543333333
Q ss_pred HHH
Q 004493 457 VER 459 (749)
Q Consensus 457 ~~~ 459 (749)
.++
T Consensus 459 ~~~ 461 (635)
T KOG0323|consen 459 DES 461 (635)
T ss_pred cch
Confidence 333
No 74
>PRK14988 GMP/IMP nucleotidase; Provisional
Probab=94.09 E-value=0.069 Score=53.65 Aligned_cols=81 Identities=17% Similarity=0.071 Sum_probs=56.0
Q ss_pred EeeCCChhhHHHHHhhhccccEEEEEEeCCcHHHHHHHHHhcCCCCCcccccccCCcEEEccC-CCccc----hhhhccC
Q 004493 260 VRLRPAWEDLRSYLTARGRKRFEVYVCTMAERDYALEMWRLLDPESNLINTKELLDRIVCVKS-GSRKS----LFNVFQD 334 (749)
Q Consensus 260 VKLRPgv~ELr~FL~a~~sk~FELyVyTmGtR~YA~eI~rLLDPdg~LFg~~~l~~RIISres-g~~Ks----L~~LFp~ 334 (749)
+++.||+.+++..|+ ++-|-++|.|++.+.++..+++. ++...+|+.|+|.++ +..|- ...+...
T Consensus 92 ~~~~~g~~e~L~~Lk---~~g~~~~i~Tn~~~~~~~~~l~~-------~~l~~~fd~iv~s~~~~~~KP~p~~~~~~~~~ 161 (224)
T PRK14988 92 AVLREDTVPFLEALK---ASGKRRILLTNAHPHNLAVKLEH-------TGLDAHLDLLLSTHTFGYPKEDQRLWQAVAEH 161 (224)
T ss_pred CCcCCCHHHHHHHHH---hCCCeEEEEeCcCHHHHHHHHHH-------CCcHHHCCEEEEeeeCCCCCCCHHHHHHHHHH
Confidence 577899999888887 45789999999999999998877 344445667777643 22221 1222211
Q ss_pred CCCCCcEEEEEcCCcc
Q 004493 335 GTCHPKMALVIDDRLK 350 (749)
Q Consensus 335 g~c~~~mvVIIDDR~d 350 (749)
....++-+++|||+..
T Consensus 162 ~~~~p~~~l~igDs~~ 177 (224)
T PRK14988 162 TGLKAERTLFIDDSEP 177 (224)
T ss_pred cCCChHHEEEEcCCHH
Confidence 1256778999999964
No 75
>PRK11009 aphA acid phosphatase/phosphotransferase; Provisional
Probab=93.93 E-value=0.18 Score=52.47 Aligned_cols=40 Identities=8% Similarity=0.002 Sum_probs=31.2
Q ss_pred EEeeCCChhhHHHHHhhhccccEEEEEEeC----CcHHHHHHHHHhc
Q 004493 259 LVRLRPAWEDLRSYLTARGRKRFEVYVCTM----AERDYALEMWRLL 301 (749)
Q Consensus 259 ~VKLRPgv~ELr~FL~a~~sk~FELyVyTm----GtR~YA~eI~rLL 301 (749)
+.++-|++.+++.+|+ ++-++|++.|+ ..+.++..+++.+
T Consensus 112 ~a~p~~Ga~elL~~L~---~~G~~I~iVTnR~~~k~~~t~~~Llk~~ 155 (237)
T PRK11009 112 FSIPKEVARQLIDMHV---KRGDSIYFITGRTATKTETVSKTLADDF 155 (237)
T ss_pred cCcchHHHHHHHHHHH---HCCCeEEEEeCCCCcccHHHHHHHHHHc
Confidence 3555677999777776 67899999999 5677899888853
No 76
>PRK09449 dUMP phosphatase; Provisional
Probab=92.96 E-value=0.17 Score=49.53 Aligned_cols=84 Identities=13% Similarity=0.140 Sum_probs=55.5
Q ss_pred EeeCCChhhHHHHHhhhccccEEEEEEeCCcHHHHHHHHHhcCCCCCcccccccCCcEEEccC-CCccc----hhhhccC
Q 004493 260 VRLRPAWEDLRSYLTARGRKRFEVYVCTMAERDYALEMWRLLDPESNLINTKELLDRIVCVKS-GSRKS----LFNVFQD 334 (749)
Q Consensus 260 VKLRPgv~ELr~FL~a~~sk~FELyVyTmGtR~YA~eI~rLLDPdg~LFg~~~l~~RIISres-g~~Ks----L~~LFp~ 334 (749)
+++.|++.+++..|+ +.|-+.|.||+.+.++..+++. ++...+|+.|++.++ +..|. +..++..
T Consensus 94 ~~~~~g~~~~L~~L~----~~~~~~i~Tn~~~~~~~~~l~~-------~~l~~~fd~v~~~~~~~~~KP~p~~~~~~~~~ 162 (224)
T PRK09449 94 CTPLPGAVELLNALR----GKVKMGIITNGFTELQQVRLER-------TGLRDYFDLLVISEQVGVAKPDVAIFDYALEQ 162 (224)
T ss_pred CccCccHHHHHHHHH----hCCeEEEEeCCcHHHHHHHHHh-------CChHHHcCEEEEECccCCCCCCHHHHHHHHHH
Confidence 567899999777774 3599999999999999998877 444556678887643 22221 2222221
Q ss_pred CCC-CCcEEEEEcCCc--ccCCC
Q 004493 335 GTC-HPKMALVIDDRL--KVWDD 354 (749)
Q Consensus 335 g~c-~~~mvVIIDDR~--dVW~~ 354 (749)
..+ .++-+++|+|+. |+=..
T Consensus 163 ~~~~~~~~~~~vgD~~~~Di~~A 185 (224)
T PRK09449 163 MGNPDRSRVLMVGDNLHSDILGG 185 (224)
T ss_pred cCCCCcccEEEEcCCcHHHHHHH
Confidence 112 336799999984 56433
No 77
>PRK06698 bifunctional 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase/phosphatase; Validated
Probab=91.09 E-value=0.46 Score=52.84 Aligned_cols=79 Identities=15% Similarity=0.283 Sum_probs=55.9
Q ss_pred EEeeCCChhhHHHHHhhhccccEEEEEEeCCcHHHHHHHHHhcCCCCCcccccccCCcEEEccCCC--cc--chhhhccC
Q 004493 259 LVRLRPAWEDLRSYLTARGRKRFEVYVCTMAERDYALEMWRLLDPESNLINTKELLDRIVCVKSGS--RK--SLFNVFQD 334 (749)
Q Consensus 259 ~VKLRPgv~ELr~FL~a~~sk~FELyVyTmGtR~YA~eI~rLLDPdg~LFg~~~l~~RIISresg~--~K--sL~~LFp~ 334 (749)
.+++.||+.+++.+|+ ++.+.+.|.|++.+.|+..+++. ++...+|+.|+|.++.. .| -+......
T Consensus 328 ~~~l~pG~~e~L~~Lk---~~g~~l~IvS~~~~~~~~~~l~~-------~~l~~~f~~i~~~d~v~~~~kP~~~~~al~~ 397 (459)
T PRK06698 328 KGALYPNVKEIFTYIK---ENNCSIYIASNGLTEYLRAIVSY-------YDLDQWVTETFSIEQINSLNKSDLVKSILNK 397 (459)
T ss_pred CCCcCCCHHHHHHHHH---HCCCeEEEEeCCchHHHHHHHHH-------CCcHhhcceeEecCCCCCCCCcHHHHHHHHh
Confidence 3578899999999997 56799999999999999999988 44445566788875431 11 12222211
Q ss_pred CCCCCcEEEEEcCCc
Q 004493 335 GTCHPKMALVIDDRL 349 (749)
Q Consensus 335 g~c~~~mvVIIDDR~ 349 (749)
..++-+++|.|+.
T Consensus 398 --l~~~~~v~VGDs~ 410 (459)
T PRK06698 398 --YDIKEAAVVGDRL 410 (459)
T ss_pred --cCcceEEEEeCCH
Confidence 2345689998886
No 78
>TIGR02009 PGMB-YQAB-SF beta-phosphoglucomutase family hydrolase. All of these are members of the larger Haloacid dehalogenase (HAD) subfamily IA and include the "variant 3" glu-asp version of the third conserved HAD domain (TIGR01509).
Probab=90.68 E-value=0.31 Score=45.89 Aligned_cols=78 Identities=18% Similarity=0.210 Sum_probs=50.2
Q ss_pred EeeCCChhhHHHHHhhhccccEEEEEEeCCcHHHHHHHHHhcCCCCCcccccccCCcEEEccCC-Ccc----chhhhccC
Q 004493 260 VRLRPAWEDLRSYLTARGRKRFEVYVCTMAERDYALEMWRLLDPESNLINTKELLDRIVCVKSG-SRK----SLFNVFQD 334 (749)
Q Consensus 260 VKLRPgv~ELr~FL~a~~sk~FELyVyTmGtR~YA~eI~rLLDPdg~LFg~~~l~~RIISresg-~~K----sL~~LFp~ 334 (749)
+++.||+.++++.|+ +..|.+.|.|++ .++..+++. ++...+++-|++.++. ..| .+..+...
T Consensus 87 ~~~~~g~~~~l~~l~---~~g~~i~i~S~~--~~~~~~l~~-------~~l~~~f~~v~~~~~~~~~kp~~~~~~~~~~~ 154 (185)
T TIGR02009 87 AEVLPGIENFLKRLK---KKGIAVGLGSSS--KNADRILAK-------LGLTDYFDAIVDADEVKEGKPHPETFLLAAEL 154 (185)
T ss_pred CCCCcCHHHHHHHHH---HcCCeEEEEeCc--hhHHHHHHH-------cChHHHCCEeeehhhCCCCCCChHHHHHHHHH
Confidence 578899999888886 457899999998 778877776 3444455667765322 111 12222221
Q ss_pred CCCCCcEEEEEcCCc
Q 004493 335 GTCHPKMALVIDDRL 349 (749)
Q Consensus 335 g~c~~~mvVIIDDR~ 349 (749)
....++-+|+|+|+.
T Consensus 155 ~~~~~~~~v~IgD~~ 169 (185)
T TIGR02009 155 LGVSPNECVVFEDAL 169 (185)
T ss_pred cCCCHHHeEEEeCcH
Confidence 124567788999984
No 79
>PF12710 HAD: haloacid dehalogenase-like hydrolase; PDB: 3P96_A 3N28_A 3FVV_A 1RKU_A 1RKV_A 1Y8A_A 2FEA_B 3KD3_B.
Probab=90.35 E-value=1 Score=42.52 Aligned_cols=38 Identities=13% Similarity=0.106 Sum_probs=29.4
Q ss_pred CChhhHHHHHhhhccccEEEEEEeCCcHHHHHHHHHhcCCC
Q 004493 264 PAWEDLRSYLTARGRKRFEVYVCTMAERDYALEMWRLLDPE 304 (749)
Q Consensus 264 Pgv~ELr~FL~a~~sk~FELyVyTmGtR~YA~eI~rLLDPd 304 (749)
|.+.+++..|+ +.-++++|.|.|.+.|+..+++.+.=+
T Consensus 92 ~~~~e~i~~~~---~~~~~v~IvS~~~~~~i~~~~~~~~i~ 129 (192)
T PF12710_consen 92 PDAMELIRELK---DNGIKVVIVSGSPDEIIEPIAERLGID 129 (192)
T ss_dssp TTHHHHHHHHH---HTTSEEEEEEEEEHHHHHHHHHHTTSS
T ss_pred hhHHHHHHHHH---HCCCEEEEECCCcHHHHHHHHHHcCCC
Confidence 34448555554 668999999999999999999876643
No 80
>PF12689 Acid_PPase: Acid Phosphatase; InterPro: IPR010036 This entry represents two closely related clades of sequences from eukaryotes and archaea. The mouse enzyme has been characterised as a phosphatase and has been positively identified as a member of the haloacid dehalogenase (HAD) superfamily by site-directed mutagenesis of the active site residues [, ].; GO: 0016791 phosphatase activity; PDB: 1U7P_A 1U7O_A 2WM8_A.
Probab=89.55 E-value=1.3 Score=44.23 Aligned_cols=88 Identities=19% Similarity=0.260 Sum_probs=45.5
Q ss_pred EEEeeCCChhhHHHHHhhhccccEEEEEEe-CCcHHHHHHHHHhcCCC---CCcccccccCCcEEEccCC-Cccchhhhc
Q 004493 258 VLVRLRPAWEDLRSYLTARGRKRFEVYVCT-MAERDYALEMWRLLDPE---SNLINTKELLDRIVCVKSG-SRKSLFNVF 332 (749)
Q Consensus 258 ~~VKLRPgv~ELr~FL~a~~sk~FELyVyT-mGtR~YA~eI~rLLDPd---g~LFg~~~l~~RIISresg-~~KsL~~LF 332 (749)
.-+++-|.+.+++.-|+ ..-.+|-|.+ ..+-..|.+++++|+=. +......++|+- .-.-.+ ..+.+.++.
T Consensus 42 ~~v~lypdv~~iL~~L~---~~gv~lavASRt~~P~~A~~~L~~l~i~~~~~~~~~~~~~F~~-~eI~~gsK~~Hf~~i~ 117 (169)
T PF12689_consen 42 EEVSLYPDVPEILQELK---ERGVKLAVASRTDEPDWARELLKLLEIDDADGDGVPLIEYFDY-LEIYPGSKTTHFRRIH 117 (169)
T ss_dssp -EE---TTHHHHHHHHH---HCT--EEEEE--S-HHHHHHHHHHTT-C----------CCECE-EEESSS-HHHHHHHHH
T ss_pred CEEEeCcCHHHHHHHHH---HCCCEEEEEECCCChHHHHHHHHhcCCCccccccccchhhcch-hheecCchHHHHHHHH
Confidence 35788899999888887 4889999999 67889999999998766 111111122222 111222 334455444
Q ss_pred cCCCCCCcEEEEEcCCc
Q 004493 333 QDGTCHPKMALVIDDRL 349 (749)
Q Consensus 333 p~g~c~~~mvVIIDDR~ 349 (749)
...+...+-++++||..
T Consensus 118 ~~tgI~y~eMlFFDDe~ 134 (169)
T PF12689_consen 118 RKTGIPYEEMLFFDDES 134 (169)
T ss_dssp HHH---GGGEEEEES-H
T ss_pred HhcCCChhHEEEecCch
Confidence 33224556789999963
No 81
>TIGR01691 enolase-ppase 2,3-diketo-5-methylthio-1-phosphopentane phosphatase. This enzyme is the enolase-phosphatase of methionine salvage, a pathway that regenerates methionine from methylthioadenosine (MTA). Adenosylmethionine (AdoMet) is a donor of different moieties for various processes, including methylation reactions. Use of AdoMet for spermidine biosynthesis, which leads to polyamine biosynthesis, leaves MTA as a by-product that must be cleared. In Bacillus subtilis and related species, this single protein is replaced by separate enzymes with enolase and phosphatase activities.
Probab=89.26 E-value=0.61 Score=47.87 Aligned_cols=86 Identities=13% Similarity=0.118 Sum_probs=52.9
Q ss_pred EEeeCCChhhHHHHHhhhccccEEEEEEeCCcHHHHHHHHHhcCCC--CCcccccccCCcEEEccCCCccchhhhccCCC
Q 004493 259 LVRLRPAWEDLRSYLTARGRKRFEVYVCTMAERDYALEMWRLLDPE--SNLINTKELLDRIVCVKSGSRKSLFNVFQDGT 336 (749)
Q Consensus 259 ~VKLRPgv~ELr~FL~a~~sk~FELyVyTmGtR~YA~eI~rLLDPd--g~LFg~~~l~~RIISresg~~KsL~~LFp~g~ 336 (749)
-.++.|++.++++.|+ ++-|.++|||+|.+.+...+.+.++-. ..+|. .+++-+++.|.. ...+..++....
T Consensus 93 ~~~lypgv~e~L~~Lk---~~G~~l~I~Sn~s~~~~~~~~~~~~~~~L~~~f~--~~fd~~~g~KP~-p~~y~~i~~~lg 166 (220)
T TIGR01691 93 TSHLYPDVPPALEAWL---QLGLRLAVYSSGSVPAQKLLFGHSDAGNLTPYFS--GYFDTTVGLKTE-AQSYVKIAGQLG 166 (220)
T ss_pred ccCcCcCHHHHHHHHH---HCCCEEEEEeCCCHHHHHHHHhhccccchhhhcc--eEEEeCcccCCC-HHHHHHHHHHhC
Confidence 3567899999777776 567999999999999998888775311 12343 122223333322 112222222222
Q ss_pred CCCcEEEEEcCCcc
Q 004493 337 CHPKMALVIDDRLK 350 (749)
Q Consensus 337 c~~~mvVIIDDR~d 350 (749)
..++-+++|+|+..
T Consensus 167 v~p~e~lfVgDs~~ 180 (220)
T TIGR01691 167 SPPREILFLSDIIN 180 (220)
T ss_pred cChhHEEEEeCCHH
Confidence 56788999999853
No 82
>smart00559 Ku78 Ku70 and Ku80 are 70kDa and 80kDa subunits of the Lupus Ku autoantigen. This is a single stranded DNA- and ATP-depedent helicase that has a role in chromosome translocation. This is a domain of unknown function C-terminal to its von Willebrand factor A domain, that also occurs in bacterial hypothetical proteins.
Probab=87.63 E-value=2.7 Score=40.19 Aligned_cols=85 Identities=14% Similarity=0.146 Sum_probs=60.6
Q ss_pred cccceEEeeeccCCCCCCchhhhhhhcccceeEeeccCCC----CcHHHHHHHHHhhhcccceEEec--CCCceeEEEEe
Q 004493 36 VFDEIRISYFSEASERCPPLAVLHTITASGICFKMESKSS----DNIQLHLLHSSCIRENKTAVMPL--GLTEELHLVAM 109 (749)
Q Consensus 36 ~~~~i~i~~~~~~~erc~pl~vlh~ia~~~~~~~~~~~~~----~~~~l~~lH~~c~~enKtaVv~~--~~~~ElhLvam 109 (749)
-..+|.|.+|-+.+ ..|+. |.+. ...|-. +... ...++..|+.+|.+.+|.||++. ..+.+-+|||+
T Consensus 34 ~~~~l~ilgF~~~~-~i~~~---~~~~--~s~~i~-P~~~~~~~s~~a~~aL~~am~~~~~~aiar~v~r~~~~p~l~aL 106 (140)
T smart00559 34 SEPGLELLGFKPLS-SLPPY---YFLR--PSYFLV-PDDKSVIGSTKAFSALVEALLETDKIAIARYTLRTKSNPRLVAL 106 (140)
T ss_pred CCCeEEEEeecChH-HCCHh---HccC--CcEEEe-eCCcccchhHHHHHHHHHHHHhcCCEEEEEEEEcCCCCCEEEEE
Confidence 35789999999887 44543 4443 223322 2222 27899999999999999999998 54667999999
Q ss_pred eecCCCCCccEEEEEeec
Q 004493 110 YSRNNEKQYPCFWAFSVG 127 (749)
Q Consensus 110 ~s~~~~~~~p~Fw~f~v~ 127 (749)
.....+....|||....+
T Consensus 107 ~P~~~~~~~~~l~~~~Lp 124 (140)
T smart00559 107 RPYDEEDDGEGLVLVQLP 124 (140)
T ss_pred EeeecccCCCcEEEEecC
Confidence 887654444588776555
No 83
>PLN02779 haloacid dehalogenase-like hydrolase family protein
Probab=87.21 E-value=0.82 Score=48.04 Aligned_cols=96 Identities=14% Similarity=0.143 Sum_probs=58.3
Q ss_pred EeeCCChhhHHHHHhhhccccEEEEEEeCCcHHHHHHHHHhcCCCCCcccccccCCcEEEccC-CCcc----chhhhccC
Q 004493 260 VRLRPAWEDLRSYLTARGRKRFEVYVCTMAERDYALEMWRLLDPESNLINTKELLDRIVCVKS-GSRK----SLFNVFQD 334 (749)
Q Consensus 260 VKLRPgv~ELr~FL~a~~sk~FELyVyTmGtR~YA~eI~rLLDPdg~LFg~~~l~~RIISres-g~~K----sL~~LFp~ 334 (749)
+++.||+.+++.+|+ .+.|.+.|.|++.+.++..+++.+.= -.+|.. + .+++.++ +..| -+..++..
T Consensus 143 ~~l~pGv~elL~~L~---~~g~~l~IvTn~~~~~~~~~l~~~~~-~~~~~~---~-~~v~~~~~~~~KP~p~~~~~a~~~ 214 (286)
T PLN02779 143 LPLRPGVLRLMDEAL---AAGIKVAVCSTSNEKAVSKIVNTLLG-PERAQG---L-DVFAGDDVPKKKPDPDIYNLAAET 214 (286)
T ss_pred CCchhhHHHHHHHHH---HCCCeEEEEeCCCHHHHHHHHHHhcc-ccccCc---e-EEEeccccCCCCCCHHHHHHHHHH
Confidence 578899999888886 56799999999999999999886520 123331 1 1233322 1112 12222221
Q ss_pred CCCCCcEEEEEcCCcccCCCCCCCCeEEe
Q 004493 335 GTCHPKMALVIDDRLKVWDDKDQPRVHVV 363 (749)
Q Consensus 335 g~c~~~mvVIIDDR~dVW~~~~qn~I~vV 363 (749)
....++-+++|+|+..=.......++.+|
T Consensus 215 ~~~~p~~~l~IGDs~~Di~aA~~aG~~~i 243 (286)
T PLN02779 215 LGVDPSRCVVVEDSVIGLQAAKAAGMRCI 243 (286)
T ss_pred hCcChHHEEEEeCCHHhHHHHHHcCCEEE
Confidence 12466789999999754444334455443
No 84
>TIGR01261 hisB_Nterm histidinol-phosphatase. This model describes histidinol phosphatase. All known examples in the scope of this model are bifunctional proteins with a histidinol phosphatase domain followed by an imidazoleglycerol-phosphate dehydratase domain. These enzymatic domains catalyze the ninth and seventh steps, respectively, of histidine biosynthesis.
Probab=86.41 E-value=1.4 Score=43.06 Aligned_cols=80 Identities=18% Similarity=0.233 Sum_probs=50.8
Q ss_pred EEeeCCChhhHHHHHhhhccccEEEEEEeCC---------------cHHHHHHHHHhcCCCCCcccccccCCcEEE----
Q 004493 259 LVRLRPAWEDLRSYLTARGRKRFEVYVCTMA---------------ERDYALEMWRLLDPESNLINTKELLDRIVC---- 319 (749)
Q Consensus 259 ~VKLRPgv~ELr~FL~a~~sk~FELyVyTmG---------------tR~YA~eI~rLLDPdg~LFg~~~l~~RIIS---- 319 (749)
.+++-|++.++++.|+ .+-|.++|.||. .+.|+.++++.++-. |. .-++|
T Consensus 27 ~~~~~pgv~e~L~~L~---~~g~~l~IvSN~~g~~~~~~~~~~~~~~~~~~~~~l~~~gl~---fd-----~ii~~~~~~ 95 (161)
T TIGR01261 27 KLRFEKGVIPALLKLK---KAGYKFVMVTNQDGLGTPSFPQADFDGPHNLMLQIFRSQGII---FD-----DVLICPHFP 95 (161)
T ss_pred HeeECCCHHHHHHHHH---HCCCeEEEEeCCccccCCcCCHHHHHHHHHHHHHHHHHCCCc---ee-----EEEECCCCC
Confidence 3567799999888886 467999999996 356777777775543 43 34455
Q ss_pred ccC-CCc----cchhhhccCCCCCCcEEEEEcCCc
Q 004493 320 VKS-GSR----KSLFNVFQDGTCHPKMALVIDDRL 349 (749)
Q Consensus 320 res-g~~----KsL~~LFp~g~c~~~mvVIIDDR~ 349 (749)
.++ +.. .-+..++.....+++-+++|+|+.
T Consensus 96 ~~~~~~~KP~~~~~~~~~~~~~~~~~e~l~IGD~~ 130 (161)
T TIGR01261 96 DDNCDCRKPKIKLLEPYLKKNLIDKARSYVIGDRE 130 (161)
T ss_pred CCCCCCCCCCHHHHHHHHHHcCCCHHHeEEEeCCH
Confidence 222 111 223333332225678899999983
No 85
>PF05152 DUF705: Protein of unknown function (DUF705); InterPro: IPR007827 This family contains uncharacterised baculoviral proteins.
Probab=85.72 E-value=1.3 Score=48.10 Aligned_cols=47 Identities=19% Similarity=0.239 Sum_probs=34.3
Q ss_pred CChhhHHHHHhhhccccE-EEEEEeCCcHHHHHHHHHhcCCCCCcccccccCCcEEEcc
Q 004493 264 PAWEDLRSYLTARGRKRF-EVYVCTMAERDYALEMWRLLDPESNLINTKELLDRIVCVK 321 (749)
Q Consensus 264 Pgv~ELr~FL~a~~sk~F-ELyVyTmGtR~YA~eI~rLLDPdg~LFg~~~l~~RIISre 321 (749)
|.+.+ .|. +..+.+ -|+++.-|+++|+..-++.+ +..++|+=|||..
T Consensus 145 ~~v~~---sL~-~Lk~~g~vLvLWSyG~~eHV~~sl~~~-------~L~~~Fd~ii~~G 192 (297)
T PF05152_consen 145 PAVYD---SLR-ELKEQGCVLVLWSYGNREHVRHSLKEL-------KLEGYFDIIICGG 192 (297)
T ss_pred hHHHH---HHH-HHHHcCCEEEEecCCCHHHHHHHHHHh-------CCccccEEEEeCC
Confidence 45555 454 444444 99999999999999999995 4445666888874
No 86
>TIGR01493 HAD-SF-IA-v2 Haloacid dehalogenase superfamily, subfamily IA, variant 2 with 3rd motif like haloacid dehalogenase. The Subfamily IA and IB capping domains are predicted by PSI-PRED to consist of an alpha helical bundle. Subfamily I encompasses such a wide region of sequence space (the sequences are highly divergent) that modelling it with a single alignment is impossible, resulting in an overly broad description which allows in many unrelated sequences. Subfamily IA and IB are separated based on an aparrent phylogenetic bifurcation. Subfamily IA is still too broad to model, but cannot be further subdivided into large chunks based on phylogenetic trees. Of the three motifs defining the HAD superfamily, the third has three variant forms : (1) hhhhsDxxx(x)D, (2) hhhhssxxx(x)D and (3) hhhhDDxxx(x)s where _s_ refers to a small amino acid and _h_ to a hydrophobic one. All three of these variants are found in subfamily IA. Individual models were made based on seeds exhibiting only o
Probab=84.75 E-value=0.4 Score=45.13 Aligned_cols=73 Identities=16% Similarity=0.079 Sum_probs=48.7
Q ss_pred EeeCCChhhHHHHHhhhccccEEEEEEeCCcHHHHHHHHHhcCCCCCcccccccCCcEEEccC-CCccc----hhhhccC
Q 004493 260 VRLRPAWEDLRSYLTARGRKRFEVYVCTMAERDYALEMWRLLDPESNLINTKELLDRIVCVKS-GSRKS----LFNVFQD 334 (749)
Q Consensus 260 VKLRPgv~ELr~FL~a~~sk~FELyVyTmGtR~YA~eI~rLLDPdg~LFg~~~l~~RIISres-g~~Ks----L~~LFp~ 334 (749)
+++.|++.+ +|+ .+.|.||+.+.+...+++.+ +...+++.|+|.++ +..|- ...++..
T Consensus 89 ~~~~~g~~~---~L~-------~~~i~Tn~~~~~~~~~l~~~-------~l~~~fd~v~~~~~~~~~KP~p~~f~~~~~~ 151 (175)
T TIGR01493 89 LPPWPDSAA---ALA-------RVAILSNASHWAFDQFAQQA-------GLPWYFDRAFSVDTVRAYKPDPVVYELVFDT 151 (175)
T ss_pred CCCCCchHH---HHH-------HHhhhhCCCHHHHHHHHHHC-------CCHHHHhhhccHhhcCCCCCCHHHHHHHHHH
Confidence 467899998 775 28899999999999998874 33344567777754 32221 1122211
Q ss_pred CCCCCcEEEEEcCCc
Q 004493 335 GTCHPKMALVIDDRL 349 (749)
Q Consensus 335 g~c~~~mvVIIDDR~ 349 (749)
..+.++-+++|+|+.
T Consensus 152 ~~~~p~~~l~vgD~~ 166 (175)
T TIGR01493 152 VGLPPDRVLMVAAHQ 166 (175)
T ss_pred HCCCHHHeEeEecCh
Confidence 125678899999983
No 87
>PF08282 Hydrolase_3: haloacid dehalogenase-like hydrolase; InterPro: IPR013200 The Haloacid Dehydrogenase (HAD) superfamily includes phosphatases, phosphonatases, P-type ATPases, beta-phosphoglucomutases, phosphomannomutases, and dehalogenases, which are involved in a variety of cellular processes ranging from amino acid biosynthesis to detoxification []. This HAD domain is found in several distinct enzymes including: Phospholipid-transporting ATPase 1 (3.6.3.1 from EC), a putative lipid-flipping enzyme involved in cold tolerance in Arabidopsis [] 3-deoxy-D-manno-octulosonate (KDO) 8-phosphate phosphatase (3.1.3.45 from EC), which catalyses the final step in the biosynthesis of KDO - a component of lipopolysaccharide in Gram-negative bacteria [] Mannosyl-3-phosphoglycerate phosphatase (3.1.3.70 from EC), which hydrolyzes mannosyl-3-phosphoglycerate to form the osmolyte mannosylglycerate [] Phosphoglycolate phopshatase (3.1.3.18 from EC), which catalyses the dephosphorylation of 2-phosphoglycolate [] ; PDB: 2B30_B 3R4C_A 1XVI_B 3IJ5_B 3MMZ_C 3L7Y_A 1XPJ_C 1RLT_B 1RLM_B 2HF2_A ....
Probab=83.66 E-value=0.86 Score=43.77 Aligned_cols=29 Identities=34% Similarity=0.320 Sum_probs=22.5
Q ss_pred EEEeCcchhhhhccccchHHHHHHHHhhhc
Q 004493 145 IVFDLDETLIVANTMRSFEDRIEALLRKIS 174 (749)
Q Consensus 145 lVfDLDeTLI~A~T~~sfe~ri~~l~~~~~ 174 (749)
|++||||||+..... --+..+++|++|.+
T Consensus 1 i~~DlDGTLl~~~~~-i~~~~~~al~~l~~ 29 (254)
T PF08282_consen 1 IFSDLDGTLLNSDGK-ISPETIEALKELQE 29 (254)
T ss_dssp EEEECCTTTCSTTSS-SCHHHHHHHHHHHH
T ss_pred cEEEECCceecCCCe-eCHHHHHHHHhhcc
Confidence 689999999986554 23677788888875
No 88
>TIGR01482 SPP-subfamily Sucrose-phosphate phosphatase subfamily. catalyze the same reaction as SPP.
Probab=82.46 E-value=1.1 Score=43.93 Aligned_cols=28 Identities=39% Similarity=0.493 Sum_probs=18.4
Q ss_pred EEEeCcchhhhhccccch-HHHHHHHHhhhc
Q 004493 145 IVFDLDETLIVANTMRSF-EDRIEALLRKIS 174 (749)
Q Consensus 145 lVfDLDeTLI~A~T~~sf-e~ri~~l~~~~~ 174 (749)
+++||||||+... +.+ +...++|+++..
T Consensus 1 i~~DlDGTLl~~~--~~i~~~~~~al~~l~~ 29 (225)
T TIGR01482 1 IASDIDGTLTDPN--RAINESALEAIRKAES 29 (225)
T ss_pred CeEeccCccCCCC--cccCHHHHHHHHHHHH
Confidence 5899999999543 334 344566766553
No 89
>PLN02811 hydrolase
Probab=82.17 E-value=2.1 Score=42.59 Aligned_cols=80 Identities=20% Similarity=0.129 Sum_probs=51.2
Q ss_pred EeeCCChhhHHHHHhhhccccEEEEEEeCCcHHHHHH-HHHhcCCCCCcccccccCCcEEEcc--CC-C--------ccc
Q 004493 260 VRLRPAWEDLRSYLTARGRKRFEVYVCTMAERDYALE-MWRLLDPESNLINTKELLDRIVCVK--SG-S--------RKS 327 (749)
Q Consensus 260 VKLRPgv~ELr~FL~a~~sk~FELyVyTmGtR~YA~e-I~rLLDPdg~LFg~~~l~~RIISre--sg-~--------~Ks 327 (749)
+++.||+.+++++|+ ..-|.+.|-|++.+.+... +.+. .+...+++.|+|.+ +- . .+.
T Consensus 77 ~~l~~gv~e~l~~L~---~~g~~~~i~S~~~~~~~~~~~~~~-------~~l~~~f~~i~~~~~~~~~~~KP~p~~~~~a 146 (220)
T PLN02811 77 SDLMPGAERLVRHLH---AKGIPIAIATGSHKRHFDLKTQRH-------GELFSLMHHVVTGDDPEVKQGKPAPDIFLAA 146 (220)
T ss_pred CCCCccHHHHHHHHH---HCCCcEEEEeCCchhhHHHHHccc-------HHHHhhCCEEEECChhhccCCCCCcHHHHHH
Confidence 467899999888887 4579999999999876643 2221 12223556788776 21 1 233
Q ss_pred hhhhccCCCCCCcEEEEEcCCcc
Q 004493 328 LFNVFQDGTCHPKMALVIDDRLK 350 (749)
Q Consensus 328 L~~LFp~g~c~~~mvVIIDDR~d 350 (749)
++++- .+...++-+|+|+|+..
T Consensus 147 ~~~~~-~~~~~~~~~v~IgDs~~ 168 (220)
T PLN02811 147 ARRFE-DGPVDPGKVLVFEDAPS 168 (220)
T ss_pred HHHhC-CCCCCccceEEEeccHh
Confidence 34332 11145678999999863
No 90
>PHA02530 pseT polynucleotide kinase; Provisional
Probab=81.00 E-value=1.8 Score=44.74 Aligned_cols=80 Identities=14% Similarity=0.185 Sum_probs=57.4
Q ss_pred EeeCCChhhHHHHHhhhccccEEEEEEeCCcHHHHHHHHHhcCCCCCcccccccCCcEEEcc--------CC--------
Q 004493 260 VRLRPAWEDLRSYLTARGRKRFEVYVCTMAERDYALEMWRLLDPESNLINTKELLDRIVCVK--------SG-------- 323 (749)
Q Consensus 260 VKLRPgv~ELr~FL~a~~sk~FELyVyTmGtR~YA~eI~rLLDPdg~LFg~~~l~~RIISre--------sg-------- 323 (749)
..+.|++.+++..|+ ++-+.+.|.|+..+.++..+++.|+-.+.+|. .|++.+ .+
T Consensus 186 ~~~~~~~~~~l~~l~---~~g~~i~i~T~r~~~~~~~~l~~l~~~~~~f~------~i~~~~~~~~~~~~~~~~kp~p~~ 256 (300)
T PHA02530 186 DKPNPMVVELVKMYK---AAGYEIIVVSGRDGVCEEDTVEWLRQTDIWFD------DLIGRPPDMHFQREQGDKRPDDVV 256 (300)
T ss_pred CCCChhHHHHHHHHH---hCCCEEEEEeCCChhhHHHHHHHHHHcCCchh------hhhCCcchhhhcccCCCCCCcHHH
Confidence 467899999766665 45799999999999999999999988887775 344433 11
Q ss_pred CccchhhhccCCCCCCcEEEEEcCCccc
Q 004493 324 SRKSLFNVFQDGTCHPKMALVIDDRLKV 351 (749)
Q Consensus 324 ~~KsL~~LFp~g~c~~~mvVIIDDR~dV 351 (749)
..+.|.++.. ..++-++.|||+..+
T Consensus 257 ~~~~l~~~~~---~~~~~~~~vgD~~~d 281 (300)
T PHA02530 257 KEEIFWEKIA---PKYDVLLAVDDRDQV 281 (300)
T ss_pred HHHHHHHHhc---cCceEEEEEcCcHHH
Confidence 1233444321 145889999999875
No 91
>TIGR01656 Histidinol-ppas histidinol-phosphate phosphatase family domain. This domain is a member of the haloacid-dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. This superfamily is distinguished by the presence of three motifs: an N-terminal motif containing the nucleophilic aspartate, a central motif containing an conserved serine or threonine, and a C-terminal motif containing a conserved lysine (or arginine) and conserved aspartates. More specifically, the domian modelled here is a member of subfamily III of the HAD-superfamily by virtue of lacking a "capping" domain in either of the two common positions, between motifs 1 and 2, or between motifs 2 and 3.
Probab=79.75 E-value=3.6 Score=38.71 Aligned_cols=39 Identities=28% Similarity=0.273 Sum_probs=31.2
Q ss_pred eeCCChhhHHHHHhhhccccEEEEEEeCCcH---------------HHHHHHHHhcC
Q 004493 261 RLRPAWEDLRSYLTARGRKRFEVYVCTMAER---------------DYALEMWRLLD 302 (749)
Q Consensus 261 KLRPgv~ELr~FL~a~~sk~FELyVyTmGtR---------------~YA~eI~rLLD 302 (749)
++.|++.+++.+|+ .+-|.+.|.||+.+ .++..+++.++
T Consensus 27 ~~~~g~~~~l~~Lk---~~g~~~~I~Sn~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 80 (147)
T TIGR01656 27 QLRPGAVPALLTLR---AAGYTVVVVTNQSGIGRGYFSAEAFRAPNGRVLELLRQLG 80 (147)
T ss_pred EEcCChHHHHHHHH---HCCCEEEEEeCCCcccCCcCCHHHHHHHHHHHHHHHHhCC
Confidence 57799999888887 68899999999985 56666666654
No 92
>TIGR01485 SPP_plant-cyano sucrose-6F-phosphate phosphohydrolase. Sucrose phosphate synthase (SPS), the prior step in the biosynthesis of sucrose contains a domain which exhibits considerable similarity to SPP albeit without conservation of the catalytic residues. The catalytic machinery of the synthase resides in another domain. It seems likely that the phosphatase-like domain is involved in substrate binding, possibly binding both substrates in a "product-like" orientation prior to ligation by the synthase catalytic domain.
Probab=78.95 E-value=0.92 Score=45.97 Aligned_cols=14 Identities=50% Similarity=0.520 Sum_probs=12.5
Q ss_pred eeeEEEeCcchhhh
Q 004493 142 CLGIVFDLDETLIV 155 (749)
Q Consensus 142 ~L~lVfDLDeTLI~ 155 (749)
++.|+.||||||+.
T Consensus 1 ~~li~tDlDGTLl~ 14 (249)
T TIGR01485 1 RLLLVSDLDNTLVD 14 (249)
T ss_pred CeEEEEcCCCcCcC
Confidence 47899999999996
No 93
>KOG3120 consensus Predicted haloacid dehalogenase-like hydrolase [General function prediction only]
Probab=78.87 E-value=2 Score=45.59 Aligned_cols=35 Identities=17% Similarity=0.160 Sum_probs=31.3
Q ss_pred CChhhHHHHHhhhccccEEEEEEeCCcHHHHHHHHHh
Q 004493 264 PAWEDLRSYLTARGRKRFEVYVCTMAERDYALEMWRL 300 (749)
Q Consensus 264 Pgv~ELr~FL~a~~sk~FELyVyTmGtR~YA~eI~rL 300 (749)
||.-++.+|++ +.-. ||+.|..-++.-+-+++++.
T Consensus 87 Pgmv~lik~~a-k~g~-~eliIVSDaNsfFIe~~Lea 121 (256)
T KOG3120|consen 87 PGMVRLIKSAA-KLGC-FELIIVSDANSFFIEEILEA 121 (256)
T ss_pred ccHHHHHHHHH-hCCC-ceEEEEecCchhHHHHHHHH
Confidence 79999999998 5444 99999999999999999998
No 94
>PF03767 Acid_phosphat_B: HAD superfamily, subfamily IIIB (Acid phosphatase); InterPro: IPR005519 This family of class B acid phosphatases also contains a number of vegetative storage proteins (VPS25). The acid phosphatase activity of VPS has been experimentally demonstrated [].; GO: 0003993 acid phosphatase activity; PDB: 3PCT_C 2I34_A 2I33_A 1Z5U_D 1Z5G_A 2AUT_C 1Z88_B 3OCV_A 3OCZ_A 3OCX_A ....
Probab=77.59 E-value=1.8 Score=44.54 Aligned_cols=26 Identities=19% Similarity=0.296 Sum_probs=19.4
Q ss_pred CChhhHHHHHhhhccccEEEEEEeCCcHH
Q 004493 264 PAWEDLRSYLTARGRKRFEVYVCTMAERD 292 (749)
Q Consensus 264 Pgv~ELr~FL~a~~sk~FELyVyTmGtR~ 292 (749)
|+..+|..++. ++-++|++.|+=...
T Consensus 118 p~a~~l~~~~~---~~G~~V~~iT~R~~~ 143 (229)
T PF03767_consen 118 PGALELYNYAR---SRGVKVFFITGRPES 143 (229)
T ss_dssp TTHHHHHHHHH---HTTEEEEEEEEEETT
T ss_pred HHHHHHHHHHH---HCCCeEEEEecCCch
Confidence 67778666665 677999999985555
No 95
>PTZ00174 phosphomannomutase; Provisional
Probab=76.46 E-value=3.5 Score=42.10 Aligned_cols=31 Identities=23% Similarity=0.295 Sum_probs=20.7
Q ss_pred eeeEEEeCcchhhhhccccch-HHHHHHHHhhhc
Q 004493 142 CLGIVFDLDETLIVANTMRSF-EDRIEALLRKIS 174 (749)
Q Consensus 142 ~L~lVfDLDeTLI~A~T~~sf-e~ri~~l~~~~~ 174 (749)
.-.|++||||||+... +.+ +..+++++.+..
T Consensus 5 ~klia~DlDGTLL~~~--~~is~~~~~ai~~l~~ 36 (247)
T PTZ00174 5 KTILLFDVDGTLTKPR--NPITQEMKDTLAKLKS 36 (247)
T ss_pred CeEEEEECcCCCcCCC--CCCCHHHHHHHHHHHH
Confidence 4468999999999654 223 345666766543
No 96
>TIGR01675 plant-AP plant acid phosphatase. This model explicitly excludes the VSPs which lack the nucleophilc aspartate. The possibility exists, however, that some members of this family may, while containing all of the conserved HAD-superfamily catalytic residues, lack activity and have a function related to the function of the VSPs rather than the acid phosphatases.
Probab=73.11 E-value=2 Score=44.99 Aligned_cols=95 Identities=12% Similarity=0.060 Sum_probs=53.0
Q ss_pred CChhhHHHHHhhhccccEEEEEEeCCcHHHHHHHHHhcCCCCCcccccccCCcEEEcc-CCCc------cc--hhhhccC
Q 004493 264 PAWEDLRSYLTARGRKRFEVYVCTMAERDYALEMWRLLDPESNLINTKELLDRIVCVK-SGSR------KS--LFNVFQD 334 (749)
Q Consensus 264 Pgv~ELr~FL~a~~sk~FELyVyTmGtR~YA~eI~rLLDPdg~LFg~~~l~~RIISre-sg~~------Ks--L~~LFp~ 334 (749)
|++.++.++|. ++-++++++|.=.........+-|.-.| |. . .++++-|. ++.. |+ ...+-..
T Consensus 123 p~al~l~~~l~---~~G~~Vf~lTGR~e~~r~~T~~nL~~~G--~~--~-~~~LiLR~~~d~~~~~~~yKs~~R~~l~~~ 194 (229)
T TIGR01675 123 PEGLKLYQKII---ELGIKIFLLSGRWEELRNATLDNLINAG--FT--G-WKHLILRGLEDSNKTVVTYKSEVRKSLMEE 194 (229)
T ss_pred HHHHHHHHHHH---HCCCEEEEEcCCChHHHHHHHHHHHHcC--CC--C-cCeeeecCCCCCCchHhHHHHHHHHHHHhC
Confidence 67777666665 7789999999887766554544443333 22 1 15677664 2222 22 1122221
Q ss_pred CCCCCcEEEEEcCCcccCCCCCC-CCeEEecccCCC
Q 004493 335 GTCHPKMALVIDDRLKVWDDKDQ-PRVHVVPAFAPY 369 (749)
Q Consensus 335 g~c~~~mvVIIDDR~dVW~~~~q-n~I~vV~~Y~pf 369 (749)
.-+.+..|||...=...... .+..-.|-.+||
T Consensus 195 ---GYrIv~~iGDq~sDl~G~~~~~RtFKLPNPmYy 227 (229)
T TIGR01675 195 ---GYRIWGNIGDQWSDLLGSPPGRRTFKLPNPMYY 227 (229)
T ss_pred ---CceEEEEECCChHHhcCCCccCceeeCCCCccc
Confidence 24788899998543332222 256556666665
No 97
>PRK01158 phosphoglycolate phosphatase; Provisional
Probab=72.65 E-value=3 Score=41.05 Aligned_cols=29 Identities=24% Similarity=0.387 Sum_probs=20.2
Q ss_pred eEEEeCcchhhhhccccch-HHHHHHHHhhhc
Q 004493 144 GIVFDLDETLIVANTMRSF-EDRIEALLRKIS 174 (749)
Q Consensus 144 ~lVfDLDeTLI~A~T~~sf-e~ri~~l~~~~~ 174 (749)
.|++||||||+... +.+ +..+++|+++..
T Consensus 5 li~~DlDGTLl~~~--~~i~~~~~~al~~l~~ 34 (230)
T PRK01158 5 AIAIDIDGTITDKD--RRLSLKAVEAIRKAEK 34 (230)
T ss_pred EEEEecCCCcCCCC--CccCHHHHHHHHHHHH
Confidence 57899999999543 323 566777777653
No 98
>TIGR02461 osmo_MPG_phos mannosyl-3-phosphoglycerate phosphatase. Members of this family are mannosyl-3-phosphoglycerate phosphatase (EC 3.1.3.70). It acts sequentially after mannosyl-3-phosphoglycerate synthase (EC 2.4.1.217) in a two-step pathway of biosynthesis of the compatible solute mannosylglycerate, a typical osmolyte of thermophiles.
Probab=72.00 E-value=2.9 Score=42.56 Aligned_cols=29 Identities=31% Similarity=0.178 Sum_probs=21.5
Q ss_pred EEEeCcchhhhhccccchHHHHHHHHhhhcC
Q 004493 145 IVFDLDETLIVANTMRSFEDRIEALLRKIST 175 (749)
Q Consensus 145 lVfDLDeTLI~A~T~~sfe~ri~~l~~~~~~ 175 (749)
+++||||||+.... ..+..++++++....
T Consensus 2 i~~DlDGTLl~~~~--~~~~~~~ai~~l~~~ 30 (225)
T TIGR02461 2 IFTDLDGTLLPPGY--EPGPAREALEELKDL 30 (225)
T ss_pred EEEeCCCCCcCCCC--CchHHHHHHHHHHHC
Confidence 78999999998544 355678888766543
No 99
>KOG1615 consensus Phosphoserine phosphatase [Amino acid transport and metabolism]
Probab=71.96 E-value=32 Score=36.36 Aligned_cols=41 Identities=22% Similarity=0.209 Sum_probs=36.0
Q ss_pred eeCCChhhHHHHHhhhccccEEEEEEeCCcHHHHHHHHHhcCCC
Q 004493 261 RLRPAWEDLRSYLTARGRKRFEVYVCTMAERDYALEMWRLLDPE 304 (749)
Q Consensus 261 KLRPgv~ELr~FL~a~~sk~FELyVyTmGtR~YA~eI~rLLDPd 304 (749)
++-||++||-++|+ .+--.+|+-.-|=|..|.-|...|+=+
T Consensus 88 ~lT~Gi~eLv~~L~---~~~~~v~liSGGF~~~i~~Va~~Lgi~ 128 (227)
T KOG1615|consen 88 TLTPGIRELVSRLH---ARGTQVYLISGGFRQLIEPVAEQLGIP 128 (227)
T ss_pred ccCCCHHHHHHHHH---HcCCeEEEEcCChHHHHHHHHHHhCCc
Confidence 45689999999998 566789999999999999999999854
No 100
>PRK03669 mannosyl-3-phosphoglycerate phosphatase; Reviewed
Probab=70.55 E-value=3.1 Score=42.79 Aligned_cols=32 Identities=31% Similarity=0.259 Sum_probs=22.5
Q ss_pred eeeEEEeCcchhhhhccccchHHHHHHHHhhhc
Q 004493 142 CLGIVFDLDETLIVANTMRSFEDRIEALLRKIS 174 (749)
Q Consensus 142 ~L~lVfDLDeTLI~A~T~~sfe~ri~~l~~~~~ 174 (749)
...|++||||||+..... .-+..++++++...
T Consensus 7 ~~lI~~DlDGTLL~~~~~-i~~~~~~ai~~l~~ 38 (271)
T PRK03669 7 PLLIFTDLDGTLLDSHTY-DWQPAAPWLTRLRE 38 (271)
T ss_pred CeEEEEeCccCCcCCCCc-CcHHHHHHHHHHHH
Confidence 467899999999975432 23667788776553
No 101
>PRK12702 mannosyl-3-phosphoglycerate phosphatase; Reviewed
Probab=70.41 E-value=4 Score=44.65 Aligned_cols=66 Identities=18% Similarity=0.164 Sum_probs=37.7
Q ss_pred eEEEeCcchhhhhccccchHHHHHHHHhhhcCCCChhhh--hhhHHHHHHhhhhHHHHHHHhhcCccccCCeEEE
Q 004493 144 GIVFDLDETLIVANTMRSFEDRIEALLRKISTEVDPQRI--AGMQAEVKRYQDDKNILKQYAENDQVNENGKVIK 216 (749)
Q Consensus 144 ~lVfDLDeTLI~A~T~~sfe~ri~~l~~~~~~~~dP~r~--~~~~~evkr~q~D~~lL~qy~~~d~V~~nG~~~k 216 (749)
.|++||||||+...+- ..+..+++|++.... .-|--+ .....|++.+..... .+.-.+..||-.+.
T Consensus 3 LIftDLDGTLLd~~~~-~~~~a~~aL~~Lk~~-GI~vVlaTGRt~~ev~~l~~~Lg-----l~~p~I~eNGA~I~ 70 (302)
T PRK12702 3 LVLSSLDGSLLDLEFN-SYGAARQALAALERR-SIPLVLYSLRTRAQLEHLCRQLR-----LEHPFICEDGSAIY 70 (302)
T ss_pred EEEEeCCCCCcCCCCc-CCHHHHHHHHHHHHC-CCEEEEEcCCCHHHHHHHHHHhC-----CCCeEEEeCCcEEE
Confidence 5788999999987654 467777777655432 222111 134556665543222 12235777886554
No 102
>cd00594 KU Ku-core domain; includes the central DNA-binding beta-barrels, polypeptide rings, and the C-terminal arm of Ku proteins. The Ku protein consists of two tightly associated homologous subunits, Ku70 and Ku80, and was originally identified as an autoantigen recognized by the sera of patients with an autoimmunity disease. In eukaryotes, the Ku heterodimer contributes to genomic integrity through its ability to bind DNA double-strand breaks and facilitate repair by non-homologous end-joining. The bacterial Ku homologs does not contain the conserved N-terminal extension that is present in the eukaryotic Ku protein.
Probab=70.39 E-value=19 Score=37.29 Aligned_cols=86 Identities=15% Similarity=0.159 Sum_probs=61.1
Q ss_pred cccceEEeeeccCCCCCCchhhhhhhcccceeEeeccC--CCCcHHHHHHHHHhhhcccceEEec--CCCceeEEEEeee
Q 004493 36 VFDEIRISYFSEASERCPPLAVLHTITASGICFKMESK--SSDNIQLHLLHSSCIRENKTAVMPL--GLTEELHLVAMYS 111 (749)
Q Consensus 36 ~~~~i~i~~~~~~~erc~pl~vlh~ia~~~~~~~~~~~--~~~~~~l~~lH~~c~~enKtaVv~~--~~~~ElhLvam~s 111 (749)
-..+|.|-+|-+.+ ..|+. |.+. +..|-.-.. ..-..++..|+.+|.+.+|.||++. ..+...+|||+..
T Consensus 87 ~~~~l~ilgF~~~~-~i~~~---~~~~--~s~~l~P~~~~~~s~~af~aL~~am~~~~kvai~r~v~r~~~~p~l~aL~P 160 (272)
T cd00594 87 TSKGLDILGFVPAS-EIPPY---YFDK--ESYYLVPDDSDKGSEKAFSALRRALLEKDKVAIARYVLRRNSRPRLVALRP 160 (272)
T ss_pred CCCeEEEEeEechH-hCCcc---eecC--CcEEEEcCCCCcccHHHHHHHHHHHHHcCcEEEEEEEEcCCCCcEEEEEec
Confidence 35789999999887 44443 4443 344443222 2338899999999999999999998 4456899999987
Q ss_pred cCCCCCccEEEEEeecc
Q 004493 112 RNNEKQYPCFWAFSVGS 128 (749)
Q Consensus 112 ~~~~~~~p~Fw~f~v~~ 128 (749)
...+ ..+|||....|.
T Consensus 161 ~~~~-~~~gl~l~~LPf 176 (272)
T cd00594 161 QEEE-DPEGLVLVTLPF 176 (272)
T ss_pred cccC-CCCEEEEEccCC
Confidence 7543 457888776663
No 103
>COG0561 Cof Predicted hydrolases of the HAD superfamily [General function prediction only]
Probab=70.38 E-value=7.4 Score=39.52 Aligned_cols=28 Identities=36% Similarity=0.356 Sum_probs=19.9
Q ss_pred eeeEEEeCcchhhhhccccchHHHHHHHH
Q 004493 142 CLGIVFDLDETLIVANTMRSFEDRIEALL 170 (749)
Q Consensus 142 ~L~lVfDLDeTLI~A~T~~sfe~ri~~l~ 170 (749)
.-.|++||||||+..+.. --+..+++|+
T Consensus 3 ~kli~~DlDGTLl~~~~~-i~~~~~~al~ 30 (264)
T COG0561 3 IKLLAFDLDGTLLDSNKT-ISPETKEALA 30 (264)
T ss_pred eeEEEEcCCCCccCCCCc-cCHHHHHHHH
Confidence 347899999999988754 2345555555
No 104
>PRK10513 sugar phosphate phosphatase; Provisional
Probab=69.89 E-value=3.7 Score=41.57 Aligned_cols=29 Identities=21% Similarity=0.315 Sum_probs=20.3
Q ss_pred eEEEeCcchhhhhccccch-HHHHHHHHhhhc
Q 004493 144 GIVFDLDETLIVANTMRSF-EDRIEALLRKIS 174 (749)
Q Consensus 144 ~lVfDLDeTLI~A~T~~sf-e~ri~~l~~~~~ 174 (749)
.+++||||||+... +.+ +..+++++++..
T Consensus 5 li~~DlDGTLl~~~--~~i~~~~~~ai~~l~~ 34 (270)
T PRK10513 5 LIAIDMDGTLLLPD--HTISPAVKQAIAAARA 34 (270)
T ss_pred EEEEecCCcCcCCC--CccCHHHHHHHHHHHH
Confidence 57899999999653 223 566777776653
No 105
>TIGR00099 Cof-subfamily Cof subfamily of IIB subfamily of haloacid dehalogenase superfamily. The members of this subfamily are restricted almost exclusively to bacteria (one sequences from S. pombe scores above trusted, while another is between trusted and noise). It is notable that no archaea are found in this group, the closest relations to the archaea found here being two Deinococcus sequences.
Probab=69.61 E-value=3.6 Score=41.58 Aligned_cols=30 Identities=30% Similarity=0.297 Sum_probs=20.6
Q ss_pred EEEeCcchhhhhccccchHHHHHHHHhhhcC
Q 004493 145 IVFDLDETLIVANTMRSFEDRIEALLRKIST 175 (749)
Q Consensus 145 lVfDLDeTLI~A~T~~sfe~ri~~l~~~~~~ 175 (749)
+++||||||+.... +--+..+++++++..+
T Consensus 2 i~~DlDGTLl~~~~-~i~~~~~~~i~~l~~~ 31 (256)
T TIGR00099 2 IFIDLDGTLLNDDH-TISPSTKEALAKLREK 31 (256)
T ss_pred EEEeCCCCCCCCCC-ccCHHHHHHHHHHHHC
Confidence 78999999997532 1125567778777643
No 106
>TIGR01493 HAD-SF-IA-v2 Haloacid dehalogenase superfamily, subfamily IA, variant 2 with 3rd motif like haloacid dehalogenase. The Subfamily IA and IB capping domains are predicted by PSI-PRED to consist of an alpha helical bundle. Subfamily I encompasses such a wide region of sequence space (the sequences are highly divergent) that modelling it with a single alignment is impossible, resulting in an overly broad description which allows in many unrelated sequences. Subfamily IA and IB are separated based on an aparrent phylogenetic bifurcation. Subfamily IA is still too broad to model, but cannot be further subdivided into large chunks based on phylogenetic trees. Of the three motifs defining the HAD superfamily, the third has three variant forms : (1) hhhhsDxxx(x)D, (2) hhhhssxxx(x)D and (3) hhhhDDxxx(x)s where _s_ refers to a small amino acid and _h_ to a hydrophobic one. All three of these variants are found in subfamily IA. Individual models were made based on seeds exhibiting only o
Probab=69.49 E-value=2.9 Score=39.39 Aligned_cols=14 Identities=36% Similarity=0.579 Sum_probs=12.0
Q ss_pred eEEEeCcchhhhhc
Q 004493 144 GIVFDLDETLIVAN 157 (749)
Q Consensus 144 ~lVfDLDeTLI~A~ 157 (749)
+|+|||||||+...
T Consensus 1 ~viFD~DGTL~D~~ 14 (175)
T TIGR01493 1 AMVFDVYGTLVDVH 14 (175)
T ss_pred CeEEecCCcCcccH
Confidence 58999999999654
No 107
>PF11019 DUF2608: Protein of unknown function (DUF2608); InterPro: IPR022565 This family is conserved in Bacteria. The function is not known.
Probab=69.18 E-value=26 Score=36.92 Aligned_cols=25 Identities=24% Similarity=0.278 Sum_probs=18.4
Q ss_pred cchhhhccCCCCCCcEEEEEcCCcc
Q 004493 326 KSLFNVFQDGTCHPKMALVIDDRLK 350 (749)
Q Consensus 326 KsL~~LFp~g~c~~~mvVIIDDR~d 350 (749)
..|..+|......++-+|+|||+.+
T Consensus 165 ~~L~~fL~~~~~~pk~IIfIDD~~~ 189 (252)
T PF11019_consen 165 EVLKYFLDKINQSPKKIIFIDDNKE 189 (252)
T ss_pred HHHHHHHHHcCCCCCeEEEEeCCHH
Confidence 4466666554467899999999865
No 108
>TIGR01544 HAD-SF-IE haloacid dehalogenase superfamily, subfamily IE hydrolase, TIGR01544. This group of sequences was found during searches for members of the haloacid dehalogenase (HAD) superfamily. All of the conserved catalytic motifs are found. The placement of the variable domain between motifs 1 and 2 indicates membership in subfamily I of the superfamily, but these sequences are sufficiently different from any of the branches (IA, TIGR01493, TIGR01509, TIGR01549; IB, TIGR01488; IC, TIGR01494; ID, TIGR01658; IF TIGR01545) of that subfamily as to constitute a separate branch to now be called IE. Considering that the closest identifiable hit outside of the noise range is to a phosphoserine phosphatase, this group may be considered to be most closely allied to subfamily IB.
Probab=68.70 E-value=7.4 Score=41.94 Aligned_cols=38 Identities=18% Similarity=0.307 Sum_probs=33.0
Q ss_pred EeeCCChhhHHHHHhhhccccEEEEEEeCCcHHHHHHHHHh
Q 004493 260 VRLRPAWEDLRSYLTARGRKRFEVYVCTMAERDYALEMWRL 300 (749)
Q Consensus 260 VKLRPgv~ELr~FL~a~~sk~FELyVyTmGtR~YA~eI~rL 300 (749)
+++|||+.+++.+|+ ..-..+.|.|.|-+.++..+++.
T Consensus 120 l~l~pG~~efl~~L~---~~GIpv~IvS~G~~~~Ie~vL~~ 157 (277)
T TIGR01544 120 VMLKDGYENFFDKLQ---QHSIPVFIFSAGIGNVLEEVLRQ 157 (277)
T ss_pred CccCcCHHHHHHHHH---HCCCcEEEEeCCcHHHHHHHHHH
Confidence 578999999777776 55689999999999999999995
No 109
>TIGR01663 PNK-3'Pase polynucleotide 5'-kinase 3'-phosphatase. Note that the EC number for the kinase function is: 2.7.1.78
Probab=68.49 E-value=8.7 Score=44.75 Aligned_cols=37 Identities=14% Similarity=0.069 Sum_probs=27.3
Q ss_pred CCChhhHHHHHhhhccccEEEEEEeCCcH------------HHHHHHHHhcC
Q 004493 263 RPAWEDLRSYLTARGRKRFEVYVCTMAER------------DYALEMWRLLD 302 (749)
Q Consensus 263 RPgv~ELr~FL~a~~sk~FELyVyTmGtR------------~YA~eI~rLLD 302 (749)
-|++.+++..|. .+-|.+.|+||-.. .++..|++.|+
T Consensus 199 ~pgV~e~L~~L~---~~Gy~IvIvTNQ~gI~~G~~~~~~~~~ki~~iL~~lg 247 (526)
T TIGR01663 199 FPEIPEKLKELE---ADGFKICIFTNQGGIARGKINADDFKAKIEAIVAKLG 247 (526)
T ss_pred ccCHHHHHHHHH---HCCCEEEEEECCcccccCcccHHHHHHHHHHHHHHcC
Confidence 478888766675 67799999999665 45777777654
No 110
>TIGR01668 YqeG_hyp_ppase HAD superfamily (subfamily IIIA) phosphatase, TIGR01668. This family consists of sequences from fungi, plants, cyanobacteria, gram-positive bacteria and Deinococcus. There is presently no characterization of any sequence in this family.
Probab=68.00 E-value=8.6 Score=37.39 Aligned_cols=86 Identities=16% Similarity=0.110 Sum_probs=51.2
Q ss_pred eeCCChhhHHHHHhhhccccEEEEEEeCCc-HHHHHHHHHhcCCCCCcccccccCCcEEEccCCCccchhhhccCCCCCC
Q 004493 261 RLRPAWEDLRSYLTARGRKRFEVYVCTMAE-RDYALEMWRLLDPESNLINTKELLDRIVCVKSGSRKSLFNVFQDGTCHP 339 (749)
Q Consensus 261 KLRPgv~ELr~FL~a~~sk~FELyVyTmGt-R~YA~eI~rLLDPdg~LFg~~~l~~RIISresg~~KsL~~LFp~g~c~~ 339 (749)
++-|++.+++++|+ .+-+.++|.||+. +..+..+++.++-.- +++ ..+.. ..-+..++......+
T Consensus 43 ~~~pgv~e~L~~Lk---~~g~~l~I~Sn~~~~~~~~~~~~~~gl~~-~~~---------~~KP~-p~~~~~~l~~~~~~~ 108 (170)
T TIGR01668 43 EAYPALRDWIEELK---AAGRKLLIVSNNAGEQRAKAVEKALGIPV-LPH---------AVKPP-GCAFRRAHPEMGLTS 108 (170)
T ss_pred CcChhHHHHHHHHH---HcCCEEEEEeCCchHHHHHHHHHHcCCEE-EcC---------CCCCC-hHHHHHHHHHcCCCH
Confidence 34588888667775 3448999999999 788888877654210 111 11221 112222222222456
Q ss_pred cEEEEEcCCc--ccCCCCCCCCeE
Q 004493 340 KMALVIDDRL--KVWDDKDQPRVH 361 (749)
Q Consensus 340 ~mvVIIDDR~--dVW~~~~qn~I~ 361 (749)
+-+++|+|+. |+-..+. .++.
T Consensus 109 ~~~l~IGDs~~~Di~aA~~-aGi~ 131 (170)
T TIGR01668 109 EQVAVVGDRLFTDVMGGNR-NGSY 131 (170)
T ss_pred HHEEEECCcchHHHHHHHH-cCCe
Confidence 7899999995 7876653 3443
No 111
>TIGR02244 HAD-IG-Ncltidse HAD superfamily (subfamily IG) hydrolase, 5'-nucleotidase. A TIGRFAMs model (TIGR01993) represents a (putative) family of _pyrimidine_ 5'-nucleotidases which are also subfamily I HAD's, which should not be confused with the current model.
Probab=67.70 E-value=7 Score=43.24 Aligned_cols=60 Identities=17% Similarity=0.180 Sum_probs=43.4
Q ss_pred EEEeeCCChhhHHHHHhhhccccEEEEEEeCCcHHHHHHHHHhc-CCCCCcccccccCCcEEEc
Q 004493 258 VLVRLRPAWEDLRSYLTARGRKRFEVYVCTMAERDYALEMWRLL-DPESNLINTKELLDRIVCV 320 (749)
Q Consensus 258 ~~VKLRPgv~ELr~FL~a~~sk~FELyVyTmGtR~YA~eI~rLL-DPdg~LFg~~~l~~RIISr 320 (749)
-|++.-|++.+++..|+ +.-..+.|.||+.+.|++.+++.| ++....=+-..+|+-||+-
T Consensus 181 ~yv~~~pgl~elL~~Lr---~~G~klfLvTNS~~~yt~~im~~l~g~~~~~~~w~~yFD~IIt~ 241 (343)
T TIGR02244 181 KYVLRDPKLPLFLSKLK---EHGKKLFLLTNSDYDYTDKGMKYLLGPFLGEHDWRDYFDVVIVD 241 (343)
T ss_pred HHhccchhHHHHHHHHH---HCCCeEEEEeCCCHHHHHHHHHHhhCCcccccchHhhCcEEEeC
Confidence 38888999999888886 456788999999999999999996 6322111123445566654
No 112
>TIGR01681 HAD-SF-IIIC HAD-superfamily phosphatase, subfamily IIIC. No member of this subfamily is characterized with respect to function, however the MDP-1 protein is a characterized phosphatase. All of the characterized enzymes within subfamily III are phosphatases, and all of the active site residues characteristic of HAD-superfamily phosphatases are present in subfamily IIIC.
Probab=67.60 E-value=4.5 Score=37.62 Aligned_cols=14 Identities=57% Similarity=0.750 Sum_probs=12.4
Q ss_pred eEEEeCcchhhhhc
Q 004493 144 GIVFDLDETLIVAN 157 (749)
Q Consensus 144 ~lVfDLDeTLI~A~ 157 (749)
.||||||+||+..+
T Consensus 2 li~~DlD~Tl~~~~ 15 (128)
T TIGR01681 2 VIVFDLDNTLWTGE 15 (128)
T ss_pred EEEEeCCCCCCCCC
Confidence 48999999999885
No 113
>TIGR01459 HAD-SF-IIA-hyp4 HAD-superfamily class IIA hydrolase, TIGR01459. This hypothetical equivalog is a member of the Class IIA subfamily of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this equivalog are all gram negative and primarily alpha proteobacteria. Only one sequence hase been annotated as other than "hypothetical." That one, from Brucella, is annotated as related to NagD, but only by sequence similarity and should be treated with some skepticism. (See comments for Class IIA subfamily)
Probab=67.37 E-value=7.8 Score=39.34 Aligned_cols=80 Identities=9% Similarity=0.050 Sum_probs=45.4
Q ss_pred eeCCChhhHHHHHhhhccccEEEEEEeCCcHHHHH--HHHHhcCCCCCcccccccCCcEEEccCCCccchhhhccCCCCC
Q 004493 261 RLRPAWEDLRSYLTARGRKRFEVYVCTMAERDYAL--EMWRLLDPESNLINTKELLDRIVCVKSGSRKSLFNVFQDGTCH 338 (749)
Q Consensus 261 KLRPgv~ELr~FL~a~~sk~FELyVyTmGtR~YA~--eI~rLLDPdg~LFg~~~l~~RIISresg~~KsL~~LFp~g~c~ 338 (749)
++-|++.|++..|+ ++-+.++|.||+.|..+. +.++-+.-+.. .++-|++-.......|..........
T Consensus 24 ~~~pga~e~L~~L~---~~G~~~~ivTN~~~~~~~~~~~L~~~gl~~~------~~~~Ii~s~~~~~~~l~~~~~~~~~~ 94 (242)
T TIGR01459 24 HTYPGAVQNLNKII---AQGKPVYFVSNSPRNIFSLHKTLKSLGINAD------LPEMIISSGEIAVQMILESKKRFDIR 94 (242)
T ss_pred ccCccHHHHHHHHH---HCCCEEEEEeCCCCChHHHHHHHHHCCCCcc------ccceEEccHHHHHHHHHhhhhhccCC
Confidence 45689999777776 567899999999998776 44555332210 33567665432111232222211123
Q ss_pred CcEEEEEcCCc
Q 004493 339 PKMALVIDDRL 349 (749)
Q Consensus 339 ~~mvVIIDDR~ 349 (749)
++-+++|.|+.
T Consensus 95 ~~~~~~vGd~~ 105 (242)
T TIGR01459 95 NGIIYLLGHLE 105 (242)
T ss_pred CceEEEeCCcc
Confidence 44566666643
No 114
>PRK09449 dUMP phosphatase; Provisional
Probab=67.06 E-value=3.4 Score=40.64 Aligned_cols=12 Identities=58% Similarity=0.725 Sum_probs=11.1
Q ss_pred eEEEeCcchhhh
Q 004493 144 GIVFDLDETLIV 155 (749)
Q Consensus 144 ~lVfDLDeTLI~ 155 (749)
+|+|||||||+.
T Consensus 5 ~iiFDlDGTLid 16 (224)
T PRK09449 5 WILFDADETLFH 16 (224)
T ss_pred EEEEcCCCchhc
Confidence 689999999996
No 115
>PRK10976 putative hydrolase; Provisional
Probab=66.29 E-value=4.6 Score=40.92 Aligned_cols=30 Identities=23% Similarity=0.129 Sum_probs=20.8
Q ss_pred eEEEeCcchhhhhccccchHHHHHHHHhhhc
Q 004493 144 GIVFDLDETLIVANTMRSFEDRIEALLRKIS 174 (749)
Q Consensus 144 ~lVfDLDeTLI~A~T~~sfe~ri~~l~~~~~ 174 (749)
.+++||||||+.... .--+..+++++++..
T Consensus 4 li~~DlDGTLl~~~~-~is~~~~~ai~~l~~ 33 (266)
T PRK10976 4 VVASDLDGTLLSPDH-TLSPYAKETLKLLTA 33 (266)
T ss_pred EEEEeCCCCCcCCCC-cCCHHHHHHHHHHHH
Confidence 578999999997642 112556777877664
No 116
>PRK10530 pyridoxal phosphate (PLP) phosphatase; Provisional
Probab=66.06 E-value=4.6 Score=40.70 Aligned_cols=30 Identities=33% Similarity=0.463 Sum_probs=20.6
Q ss_pred eEEEeCcchhhhhccccchHHHHHHHHhhhc
Q 004493 144 GIVFDLDETLIVANTMRSFEDRIEALLRKIS 174 (749)
Q Consensus 144 ~lVfDLDeTLI~A~T~~sfe~ri~~l~~~~~ 174 (749)
.+++||||||+.... .--+..+++++++..
T Consensus 5 li~~DlDGTLl~~~~-~i~~~~~~ai~~~~~ 34 (272)
T PRK10530 5 VIALDLDGTLLTPKK-TILPESLEALARARE 34 (272)
T ss_pred EEEEeCCCceECCCC-ccCHHHHHHHHHHHH
Confidence 578999999996532 123456777877654
No 117
>TIGR01689 EcbF-BcbF capsule biosynthesis phosphatase. Due to the likelihood that the substrates of these enzymes are different depending on the nature of the particular polysaccharides associated with each species, this model has been classified as a subfamily despite the close homology.
Probab=65.76 E-value=5.2 Score=38.36 Aligned_cols=13 Identities=38% Similarity=0.723 Sum_probs=11.2
Q ss_pred eEEEeCcchhhhh
Q 004493 144 GIVFDLDETLIVA 156 (749)
Q Consensus 144 ~lVfDLDeTLI~A 156 (749)
.++|||||||+..
T Consensus 3 ~i~~DiDGTL~~~ 15 (126)
T TIGR01689 3 RLVMDLDNTITLT 15 (126)
T ss_pred EEEEeCCCCcccC
Confidence 6899999999854
No 118
>PRK15126 thiamin pyrimidine pyrophosphate hydrolase; Provisional
Probab=65.69 E-value=4.8 Score=41.15 Aligned_cols=30 Identities=27% Similarity=0.339 Sum_probs=20.5
Q ss_pred eEEEeCcchhhhhccccchHHHHHHHHhhhc
Q 004493 144 GIVFDLDETLIVANTMRSFEDRIEALLRKIS 174 (749)
Q Consensus 144 ~lVfDLDeTLI~A~T~~sfe~ri~~l~~~~~ 174 (749)
.+++||||||+.... .--+..+++++++..
T Consensus 4 li~~DlDGTLl~~~~-~i~~~~~~ai~~l~~ 33 (272)
T PRK15126 4 LAAFDMDGTLLMPDH-HLGEKTLSTLARLRE 33 (272)
T ss_pred EEEEeCCCcCcCCCC-cCCHHHHHHHHHHHH
Confidence 578999999996542 123456677777654
No 119
>TIGR02463 MPGP_rel mannosyl-3-phosphoglycerate phosphatase-related protein. This family consists of members of the HAD superfamily, subfamily IIB. All members are closely related to mannosyl-3-phosphoglycerate phosphatase, the second enzyme in a two-step pathway for biosynthesis of mannosylglycerate, a compatible solute present in some thermophiles and in Dehalococcoides ethenogenes. However, members of this family are separable in a neighbor-joining tree constructed from a multiple sequence alignment and are found only in mesophiles that lack the companion mannosyl-3-phosphoglycerate synthase (TIGR02460). Members of this family are like to act on a compound related to yet distinct from mannosyl-3-phosphoglycerate.
Probab=65.02 E-value=4.9 Score=39.62 Aligned_cols=28 Identities=25% Similarity=0.311 Sum_probs=19.4
Q ss_pred EEEeCcchhhhhccccchHHHHHHHHhhh
Q 004493 145 IVFDLDETLIVANTMRSFEDRIEALLRKI 173 (749)
Q Consensus 145 lVfDLDeTLI~A~T~~sfe~ri~~l~~~~ 173 (749)
|++||||||+..... ..+..+++|+...
T Consensus 2 i~~DlDGTLL~~~~~-~~~~~~~~l~~l~ 29 (221)
T TIGR02463 2 VFSDLDGTLLDSHSY-DWQPAAPWLTRLQ 29 (221)
T ss_pred EEEeCCCCCcCCCCC-CcHHHHHHHHHHH
Confidence 799999999976532 2445667776543
No 120
>PRK08942 D,D-heptose 1,7-bisphosphate phosphatase; Validated
Probab=64.32 E-value=19 Score=34.85 Aligned_cols=29 Identities=17% Similarity=0.071 Sum_probs=23.3
Q ss_pred EeeCCChhhHHHHHhhhccccEEEEEEeCCcH
Q 004493 260 VRLRPAWEDLRSYLTARGRKRFEVYVCTMAER 291 (749)
Q Consensus 260 VKLRPgv~ELr~FL~a~~sk~FELyVyTmGtR 291 (749)
+++.|++.++++.|+ .+-|.+.|.||+++
T Consensus 28 ~~~~pgv~e~L~~Lk---~~g~~l~I~Tn~~~ 56 (181)
T PRK08942 28 WIPIPGSIEAIARLK---QAGYRVVVATNQSG 56 (181)
T ss_pred eEECCCHHHHHHHHH---HCCCEEEEEeCCcc
Confidence 346799999888886 45699999999974
No 121
>PF02735 Ku: Ku70/Ku80 beta-barrel domain; InterPro: IPR006164 The Ku heterodimer is composed of Ku70 and Ku80 (or Ku86), 70 kDa and 80 kDa subunits of an ATP-dependent DNA helicase, which contributes to genomic integrity through its ability to bind DNA double-stranded breaks and facilitate repair by the non-homologous end-joining pathway. This is the central DNA-binding beta-barrel domain and is found in both the Ku70 and Ku80 proteins. Ku makes only a few contacts with the sugar-phosphate backbone, and none with the DNA bases, but it fits sterically to major and minor groove contours forming a ring that encircles duplex DNA, cradling two full turns of the DNA molecule. By forming a bridge between the broken DNA ends, Ku acts to structurally support and align the DNA ends, to protect them from degradation, and to prevent promiscuous binding to unbroken DNA. Ku effectively aligns the DNA, while still allowing access of polymerases, nucleases and ligases to the broken DNA ends to promote end joining [].; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0006303 double-strand break repair via nonhomologous end joining; PDB: 1JEY_B 1JEQ_B.
Probab=63.78 E-value=26 Score=34.94 Aligned_cols=86 Identities=17% Similarity=0.173 Sum_probs=52.4
Q ss_pred cccceEEeeeccCCCCCCchhhhhhhcccceeEeeccCCCC---cHHHHHHHHHhhhcccceEEec--CCCceeEEEEee
Q 004493 36 VFDEIRISYFSEASERCPPLAVLHTITASGICFKMESKSSD---NIQLHLLHSSCIRENKTAVMPL--GLTEELHLVAMY 110 (749)
Q Consensus 36 ~~~~i~i~~~~~~~erc~pl~vlh~ia~~~~~~~~~~~~~~---~~~l~~lH~~c~~enKtaVv~~--~~~~ElhLvam~ 110 (749)
...+|+|.+|-+.+. .|+ .|.+. ...|-.-..... ..++..|+.+|.+.+|.||++. +.+.+-+|||+.
T Consensus 81 ~~~~l~ilGF~~~~~-i~~---~~~~~--~~~~i~p~~~~~~~s~~~f~aL~~am~~~~~vaI~r~v~r~~~~p~l~aL~ 154 (200)
T PF02735_consen 81 TSPGLEILGFVPRSN-IPP---YYFMG--ESYFIVPDEKSGEGSAKAFSALVQAMLEKNKVAIARYVLRSNSRPRLVALI 154 (200)
T ss_dssp S-SEEEEEEEEEGGG-S-C---CG-EC--EEEEEEEETTTECCHHHHHHHHHHHHHHCTEEEEEEEESSTTS--EEEEEE
T ss_pred CCCeEEEEEEEcchh-CCc---eEEeC--CcEEEEECCCCcchhHHHHHHHHHHHHhcCcEEEEEEEEcCCCCcEEEEEE
Confidence 347899999998773 443 23333 233333222221 6789999999999999999998 445699999998
Q ss_pred ecCCCC-CccEEEEEeec
Q 004493 111 SRNNEK-QYPCFWAFSVG 127 (749)
Q Consensus 111 s~~~~~-~~p~Fw~f~v~ 127 (749)
+..... ..+||+....|
T Consensus 155 P~~~~~~~~~gl~~~~Lp 172 (200)
T PF02735_consen 155 PQIEESDTPEGLVLIRLP 172 (200)
T ss_dssp EEE-CEEC-CEEEEEE--
T ss_pred EeccccCCCCeEEEEEcC
Confidence 887531 12555554443
No 122
>TIGR01662 HAD-SF-IIIA HAD-superfamily hydrolase, subfamily IIIA. In the case of histidinol phosphatase and PNK-3'-phosphatase, this model represents a domain of a bifunctional system. In the histidinol phosphatase HisB, a C-terminal domain is an imidazoleglycerol-phosphate dehydratase which catalyzes a related step in histidine biosynthesis. In PNK-3'-phosphatase, N- and C-terminal domains constitute the polynucleotide kinase and DNA-binding components of the enzyme.
Probab=63.23 E-value=12 Score=33.97 Aligned_cols=84 Identities=15% Similarity=0.173 Sum_probs=51.2
Q ss_pred EeeCCChhhHHHHHhhhccccEEEEEEeCCc--------HHHHHHHHHhcCCCCCcccccccCCcEEEc---cCCCccch
Q 004493 260 VRLRPAWEDLRSYLTARGRKRFEVYVCTMAE--------RDYALEMWRLLDPESNLINTKELLDRIVCV---KSGSRKSL 328 (749)
Q Consensus 260 VKLRPgv~ELr~FL~a~~sk~FELyVyTmGt--------R~YA~eI~rLLDPdg~LFg~~~l~~RIISr---esg~~KsL 328 (749)
.++.|++.+++.+|+ .+-|.++|.||+. +.++.++++.+.=. |- .-++|- +. ....+
T Consensus 24 ~~~~~~v~~~l~~L~---~~g~~l~i~Sn~~~~~~~~~~~~~~~~~l~~~~l~---~~-----~~~~~~~~~KP-~~~~~ 91 (132)
T TIGR01662 24 RILYPEVPDALAELK---EAGYKVVIVTNQSGIGRGKFSSGRVARRLEELGVP---ID-----VLYACPHCRKP-KPGMF 91 (132)
T ss_pred heeCCCHHHHHHHHH---HCCCEEEEEECCccccccHHHHHHHHHHHHHCCCC---EE-----EEEECCCCCCC-ChHHH
Confidence 456689999888886 5679999999999 88888888876432 11 111221 11 11112
Q ss_pred hhhccCC-CCCCcEEEEEcCC--cccCCCC
Q 004493 329 FNVFQDG-TCHPKMALVIDDR--LKVWDDK 355 (749)
Q Consensus 329 ~~LFp~g-~c~~~mvVIIDDR--~dVW~~~ 355 (749)
..+.... ..+++-++.|+|+ .|+...+
T Consensus 92 ~~~~~~~~~~~~~~~v~IGD~~~~Di~~A~ 121 (132)
T TIGR01662 92 LEALKRFNEIDPEESVYVGDQDLTDLQAAK 121 (132)
T ss_pred HHHHHHcCCCChhheEEEcCCCcccHHHHH
Confidence 2222222 1456789999995 5665543
No 123
>TIGR00213 GmhB_yaeD D,D-heptose 1,7-bisphosphate phosphatase. This family of proteins formerly designated yaeD resembles the histidinol phosphatase domain of the bifunctional protein HisB. The member from E. coli has been characterized as D,D-heptose 1,7-bisphosphate phosphatase, GmhB, involved in inner core LPS assembly (PubMed:11751812).
Probab=62.71 E-value=22 Score=34.39 Aligned_cols=29 Identities=10% Similarity=0.052 Sum_probs=23.9
Q ss_pred EeeCCChhhHHHHHhhhccccEEEEEEeCCcH
Q 004493 260 VRLRPAWEDLRSYLTARGRKRFEVYVCTMAER 291 (749)
Q Consensus 260 VKLRPgv~ELr~FL~a~~sk~FELyVyTmGtR 291 (749)
+++-|++.+++..|+ ++-|.+.|.||+.+
T Consensus 25 ~~~~pgv~e~L~~Lk---~~G~~l~i~TN~~~ 53 (176)
T TIGR00213 25 FEFIDGVIDALRELK---KMGYALVLVTNQSG 53 (176)
T ss_pred eEECCCHHHHHHHHH---HCCCEEEEEeCCcc
Confidence 346699999888886 56799999999985
No 124
>TIGR02009 PGMB-YQAB-SF beta-phosphoglucomutase family hydrolase. All of these are members of the larger Haloacid dehalogenase (HAD) subfamily IA and include the "variant 3" glu-asp version of the third conserved HAD domain (TIGR01509).
Probab=61.90 E-value=3.5 Score=38.87 Aligned_cols=14 Identities=21% Similarity=0.676 Sum_probs=12.1
Q ss_pred eEEEeCcchhhhhc
Q 004493 144 GIVFDLDETLIVAN 157 (749)
Q Consensus 144 ~lVfDLDeTLI~A~ 157 (749)
+++||+||||+...
T Consensus 3 ~iiFD~DGTL~ds~ 16 (185)
T TIGR02009 3 AVIFDMDGVIVDTA 16 (185)
T ss_pred eEEEcCCCcccCCh
Confidence 58999999999665
No 125
>TIGR02254 YjjG/YfnB HAD superfamily (subfamily IA) hydrolase, TIGR02254. This family is a member of the haloacid dehalogenase (HAD) superfamily of hydrolases which are characterized by three conserved sequence motifs. By virtue of an alpha helical domain in-between the first and second conserved motif, this family is a member of subfamily IA (TIGR01549). Most likely, these enzymes are phosphatases.
Probab=61.03 E-value=3.7 Score=39.84 Aligned_cols=16 Identities=31% Similarity=0.627 Sum_probs=13.5
Q ss_pred eEEEeCcchhhhhccc
Q 004493 144 GIVFDLDETLIVANTM 159 (749)
Q Consensus 144 ~lVfDLDeTLI~A~T~ 159 (749)
+++||+||||+....+
T Consensus 3 ~viFD~DGTL~d~~~~ 18 (224)
T TIGR02254 3 TLLFDLDDTILDFQAA 18 (224)
T ss_pred EEEEcCcCcccccchH
Confidence 5899999999977654
No 126
>TIGR01487 SPP-like sucrose-phosphate phosphatase-like hydrolase, Archaeal. TIGR01482, in turn, is a member of the IIB subfamily (TIGR01484) of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases.
Probab=60.97 E-value=7.1 Score=38.53 Aligned_cols=28 Identities=36% Similarity=0.436 Sum_probs=18.2
Q ss_pred eEEEeCcchhhhhccccch-HHHHHHHHhhh
Q 004493 144 GIVFDLDETLIVANTMRSF-EDRIEALLRKI 173 (749)
Q Consensus 144 ~lVfDLDeTLI~A~T~~sf-e~ri~~l~~~~ 173 (749)
.+++||||||+... +.+ +..+++++++.
T Consensus 3 ~v~~DlDGTLl~~~--~~i~~~~~~~i~~l~ 31 (215)
T TIGR01487 3 LVAIDIDGTLTEPN--RMISERAIEAIRKAE 31 (215)
T ss_pred EEEEecCCCcCCCC--cccCHHHHHHHHHHH
Confidence 57899999999532 233 44456665553
No 127
>PF00702 Hydrolase: haloacid dehalogenase-like hydrolase; InterPro: IPR005834 This group of hydrolase enzymes is structurally different from the alpha/beta hydrolase family (abhydrolase). This group includes L-2-haloacid dehalogenase, epoxide hydrolases and phosphatases. The structure consists of two domains. One is an inserted four helix bundle, which is the least well conserved region of the alignment, between residues 16 and 96 of HAD1_PSESP. The rest of the fold is composed of the core alpha/beta domain.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 1TE2_A 3NAL_A 3NAM_A 3NAN_A 3A1D_B 3J09_A 3J08_A 2B8E_C 3A1E_A 2VOY_J ....
Probab=60.41 E-value=19 Score=34.40 Aligned_cols=80 Identities=14% Similarity=0.135 Sum_probs=52.6
Q ss_pred EEEeeCCChhhHHHHHhhhccccEEEEEEeCCcHHHHHHHHHhcCCCCCcccccccCCcEEEcc--CCCccchhhhccCC
Q 004493 258 VLVRLRPAWEDLRSYLTARGRKRFEVYVCTMAERDYALEMWRLLDPESNLINTKELLDRIVCVK--SGSRKSLFNVFQDG 335 (749)
Q Consensus 258 ~~VKLRPgv~ELr~FL~a~~sk~FELyVyTmGtR~YA~eI~rLLDPdg~LFg~~~l~~RIISre--sg~~KsL~~LFp~g 335 (749)
..-.+||++.+++..|+ ..-+.++|.|..++..|..+++.|.-.. ..|+++. ....|.+..+....
T Consensus 124 ~~d~~~~~~~~~l~~L~---~~Gi~~~i~TGD~~~~a~~~~~~lgi~~---------~~v~a~~~~kP~~k~~~~~i~~l 191 (215)
T PF00702_consen 124 LRDPLRPGAKEALQELK---EAGIKVAILTGDNESTASAIAKQLGIFD---------SIVFARVIGKPEPKIFLRIIKEL 191 (215)
T ss_dssp EEEEBHTTHHHHHHHHH---HTTEEEEEEESSEHHHHHHHHHHTTSCS---------EEEEESHETTTHHHHHHHHHHHH
T ss_pred ecCcchhhhhhhhhhhh---ccCcceeeeecccccccccccccccccc---------ccccccccccccchhHHHHHHHH
Confidence 45578999999777776 4558999999999999999999976522 1233333 33444333333211
Q ss_pred CCCCcEEEEEcCCc
Q 004493 336 TCHPKMALVIDDRL 349 (749)
Q Consensus 336 ~c~~~mvVIIDDR~ 349 (749)
...+.-|+.|.|..
T Consensus 192 ~~~~~~v~~vGDg~ 205 (215)
T PF00702_consen 192 QVKPGEVAMVGDGV 205 (215)
T ss_dssp TCTGGGEEEEESSG
T ss_pred hcCCCEEEEEccCH
Confidence 13456788888864
No 128
>PRK05446 imidazole glycerol-phosphate dehydratase/histidinol phosphatase; Provisional
Probab=59.12 E-value=15 Score=40.72 Aligned_cols=28 Identities=11% Similarity=0.121 Sum_probs=23.4
Q ss_pred EEeeCCChhhHHHHHhhhccccEEEEEEeCC
Q 004493 259 LVRLRPAWEDLRSYLTARGRKRFEVYVCTMA 289 (749)
Q Consensus 259 ~VKLRPgv~ELr~FL~a~~sk~FELyVyTmG 289 (749)
.+++.|++.+++.+|+ .+-|.+.|.||+
T Consensus 28 ~~~l~pGV~e~L~~Lk---~~G~kL~IvTNq 55 (354)
T PRK05446 28 KLAFEPGVIPALLKLQ---KAGYKLVMVTNQ 55 (354)
T ss_pred cceECcCHHHHHHHHH---hCCCeEEEEECC
Confidence 4788899999777776 577999999994
No 129
>PRK06769 hypothetical protein; Validated
Probab=58.19 E-value=20 Score=34.97 Aligned_cols=28 Identities=14% Similarity=0.112 Sum_probs=23.0
Q ss_pred eeCCChhhHHHHHhhhccccEEEEEEeCCcH
Q 004493 261 RLRPAWEDLRSYLTARGRKRFEVYVCTMAER 291 (749)
Q Consensus 261 KLRPgv~ELr~FL~a~~sk~FELyVyTmGtR 291 (749)
++-|++.+++.+|+ .+-|.+.|.||+..
T Consensus 28 ~~~pgv~e~L~~Lk---~~G~~l~I~Tn~~~ 55 (173)
T PRK06769 28 TLFPFTKASLQKLK---ANHIKIFSFTNQPG 55 (173)
T ss_pred EECCCHHHHHHHHH---HCCCEEEEEECCch
Confidence 46699999888886 45699999999875
No 130
>PLN02423 phosphomannomutase
Probab=57.96 E-value=10 Score=39.18 Aligned_cols=30 Identities=20% Similarity=0.247 Sum_probs=19.0
Q ss_pred eeeEEEeCcchhhhhccccch-HHHHHHHHhhh
Q 004493 142 CLGIVFDLDETLIVANTMRSF-EDRIEALLRKI 173 (749)
Q Consensus 142 ~L~lVfDLDeTLI~A~T~~sf-e~ri~~l~~~~ 173 (749)
++.++|||||||+..+ +.+ +..++++++..
T Consensus 7 ~~i~~~D~DGTLl~~~--~~i~~~~~~ai~~l~ 37 (245)
T PLN02423 7 GVIALFDVDGTLTAPR--KEATPEMLEFMKELR 37 (245)
T ss_pred ceEEEEeccCCCcCCC--CcCCHHHHHHHHHHH
Confidence 3556699999999654 333 44456555443
No 131
>PRK14988 GMP/IMP nucleotidase; Provisional
Probab=56.04 E-value=5.3 Score=40.32 Aligned_cols=13 Identities=31% Similarity=0.575 Sum_probs=11.7
Q ss_pred eEEEeCcchhhhh
Q 004493 144 GIVFDLDETLIVA 156 (749)
Q Consensus 144 ~lVfDLDeTLI~A 156 (749)
+++|||||||+..
T Consensus 12 ~vIFDlDGTL~d~ 24 (224)
T PRK14988 12 TVLLDMDGTLLDL 24 (224)
T ss_pred EEEEcCCCCccch
Confidence 6999999999973
No 132
>TIGR00578 ku70 ATP-dependent DNA helicase ii, 70 kDa subunit (ku70). Proteins in this family are involved in non-homologous end joining, a process used for the repair of double stranded DNA breaks. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). Cutoff does not detect the putative ku70 homologs in yeast.
Probab=55.56 E-value=35 Score=40.20 Aligned_cols=86 Identities=15% Similarity=0.148 Sum_probs=59.2
Q ss_pred cccceEEeeeccCCCCCCchhhhhhhcccceeEeeccCCC----CcHHHHHHHHHhhhcccceEEec--CCCceeEEEEe
Q 004493 36 VFDEIRISYFSEASERCPPLAVLHTITASGICFKMESKSS----DNIQLHLLHSSCIRENKTAVMPL--GLTEELHLVAM 109 (749)
Q Consensus 36 ~~~~i~i~~~~~~~erc~pl~vlh~ia~~~~~~~~~~~~~----~~~~l~~lH~~c~~enKtaVv~~--~~~~ElhLvam 109 (749)
...+|+|-+|-+.+. .++. |.+. +..|-. +... -..++..||.+|.+.+|.||+.. +.+.-=+|||+
T Consensus 317 ~~~~l~ilGF~~~s~-l~~~---~~~~--~s~fi~-Pde~~~~gs~~afsaL~~~l~~~~kvAI~~~v~r~~~~P~lvaL 389 (584)
T TIGR00578 317 DPPGLQLMGFKPLSM-LKKH---HHLR--PSLFVY-PEESLVRGSTTLFSALLQKCLEKEVAALCRYISRRNQPPYFVAL 389 (584)
T ss_pred CCCceEEEeeccHHH-CCch---hhcC--CceEEe-cCCcccccHHHHHHHHHHHHHhcCcEEEEEEEecCCCCCEEEEE
Confidence 456899999998873 4443 4453 233333 2222 26789999999999999999999 54566789999
Q ss_pred eecCCCC-------CccEEEEEeecc
Q 004493 110 YSRNNEK-------QYPCFWAFSVGS 128 (749)
Q Consensus 110 ~s~~~~~-------~~p~Fw~f~v~~ 128 (749)
.+...+. ..+|||....|.
T Consensus 390 ~P~~~~~d~~~~q~~p~G~~l~~LPf 415 (584)
T TIGR00578 390 VPQEEELDDQKIQVTPPGFHLVFLPF 415 (584)
T ss_pred eCCcccccccCCccCCCeEEEEecCc
Confidence 8764211 127898887663
No 133
>cd00789 KU_like Ku-core domain, Ku-like subfamily; composed of prokaryotic homologs of the eukaryotic DNA binding protein Ku. The alignment includes the core domain shared by the prokaryotic YkoV-like proteins and the eukaryotic Ku70 and Ku80. The prokaryotic Ku homologs are predicted to form homodimers. It is proposed that the Ku homologs are functionally associated with ATP-dependent DNA ligase and the eukaryotic-type primase, probably as components of a double-strand break repair system.
Probab=55.03 E-value=43 Score=35.69 Aligned_cols=78 Identities=18% Similarity=0.159 Sum_probs=55.6
Q ss_pred cccceEEeeeccCCCCCCchhhhhhhcccceeEeeccCCCCcHHHHHHHHHhhhcccceEEec-CCCceeEEEEeeecCC
Q 004493 36 VFDEIRISYFSEASERCPPLAVLHTITASGICFKMESKSSDNIQLHLLHSSCIRENKTAVMPL-GLTEELHLVAMYSRNN 114 (749)
Q Consensus 36 ~~~~i~i~~~~~~~erc~pl~vlh~ia~~~~~~~~~~~~~~~~~l~~lH~~c~~enKtaVv~~-~~~~ElhLvam~s~~~ 114 (749)
-..+|.|.+|-+.++-.| .|+ ....| +.+...-..++..|+.+|.+.+|.||++. -++.| ||||+....
T Consensus 85 ~~~~i~IlgFv~~~~I~~----~y~---~~syy-l~P~~~~~kaf~~L~~Al~~~~kvaIar~V~r~~~-~l~aL~P~~- 154 (256)
T cd00789 85 STRTIEIVDFVPLDEIDP----IYF---DKPYY-LAPDKGGEKAYALLREALRDTGKVAIAKVVLRTRE-RLAALRPRG- 154 (256)
T ss_pred CCCeEEEEeEeCHHHCCH----hHc---CCCEE-EecCCCcchHHHHHHHHHHHcCCEEEEEEEEcCCc-eEEEEEECC-
Confidence 457899999999877653 233 23344 54554448899999999999999999998 22456 999998764
Q ss_pred CCCccEEEEEeec
Q 004493 115 EKQYPCFWAFSVG 127 (749)
Q Consensus 115 ~~~~p~Fw~f~v~ 127 (749)
.|||....+
T Consensus 155 ----~gL~l~~Lp 163 (256)
T cd00789 155 ----KGLVLNTLR 163 (256)
T ss_pred ----CEEEEEECC
Confidence 366555443
No 134
>TIGR01486 HAD-SF-IIB-MPGP mannosyl-3-phosphoglycerate phosphatase family. This small group of proteins is a member of the IIB subfamily (TIGR01484) of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. Several members of this family from thermophiles (and from Dehalococcoides ethenogenes) are now known to act as mannosyl-3-phosphoglycerate (MPG) phosphatase. In these cases, the enzyme acts after MPG synthase to make the compatible solute mannosylglycerate. We propose that other mesophilic members of this family do not act as mannosyl-3-phosphoglycerate phosphatase. A member of this family is found in Escherichia coli, which appears to lack MPG synthase. Mannosylglycerate is imported in E. coli by phosphoenolpyruvate-dependent transporter (PubMed:14645248), but it appears the phosphorylation is not on the glycerate moiety, that the phosphorylated import is degraded by an alpha-mannosidase from an adjacent gene, and that E. coli would have no pathway to obta
Probab=53.62 E-value=9.2 Score=38.93 Aligned_cols=28 Identities=32% Similarity=0.318 Sum_probs=19.4
Q ss_pred EEEeCcchhhhhccccchHHHHHHHHhhh
Q 004493 145 IVFDLDETLIVANTMRSFEDRIEALLRKI 173 (749)
Q Consensus 145 lVfDLDeTLI~A~T~~sfe~ri~~l~~~~ 173 (749)
+++||||||+..... ..+..++++++..
T Consensus 2 i~~DlDGTll~~~~~-~~~~~~~~i~~l~ 29 (256)
T TIGR01486 2 IFTDLDGTLLDPHGY-DWGPAKEVLERLQ 29 (256)
T ss_pred EEEcCCCCCcCCCCc-CchHHHHHHHHHH
Confidence 789999999977641 2345667666544
No 135
>TIGR01680 Veg_Stor_Prot vegetative storage protein. The proteins represented by this model are close relatives of the plant acid phosphatases (TIGR01675), are limited to members of the Phaseoleae including Glycine max (soybean) and Phaseolus vulgaris (kidney bean). These proteins are highly expressed in the leaves of repeatedly depodded plants. VSP differs most strinkingly from the acid phosphatases in the lack of the conserved nucleophilic aspartate residue in the N-terminus, thus, they should be inactive as phosphatases. This issue was confused by the publication in 1992 of an article claiming activity for the Glycine max VSP. In 1994 this assertion was refuted by the separation of the activity from the VSP.
Probab=53.54 E-value=7.6 Score=42.05 Aligned_cols=77 Identities=13% Similarity=0.114 Sum_probs=42.6
Q ss_pred CChhhHHHHHhhhccccEEEEEEeCCcHHH-HHHHHHhcCCCCCcccccccCCcEEEccCC-Cc-------cch--hhhc
Q 004493 264 PAWEDLRSYLTARGRKRFEVYVCTMAERDY-ALEMWRLLDPESNLINTKELLDRIVCVKSG-SR-------KSL--FNVF 332 (749)
Q Consensus 264 Pgv~ELr~FL~a~~sk~FELyVyTmGtR~Y-A~eI~rLLDPdg~LFg~~~l~~RIISresg-~~-------KsL--~~LF 332 (749)
|+..+|.++|. ++-|.|++.|.=.... +..+.+|.+ .|--. .++++-|..+ +. |+- ..+-
T Consensus 148 p~al~ly~~l~---~~G~kIf~VSgR~e~~r~aT~~NL~k-aGy~~-----~~~LiLR~~~D~~~~~av~yKs~~R~~li 218 (275)
T TIGR01680 148 PETLKNYNKLV---SLGFKIIFLSGRLKDKQAVTEANLKK-AGYHT-----WEKLILKDPQDNSAENAVEYKTAARAKLI 218 (275)
T ss_pred hHHHHHHHHHH---HCCCEEEEEeCCchhHHHHHHHHHHH-cCCCC-----cceeeecCCCCCccchhHHHHHHHHHHHH
Confidence 56666666665 6788888888876543 334545533 22211 1566766432 11 322 2323
Q ss_pred cCCCCCCcEEEEEcCCcccC
Q 004493 333 QDGTCHPKMALVIDDRLKVW 352 (749)
Q Consensus 333 p~g~c~~~mvVIIDDR~dVW 352 (749)
.+ .-+.+..|||...=.
T Consensus 219 ~e---GYrIv~~iGDq~sDl 235 (275)
T TIGR01680 219 QE---GYNIVGIIGDQWNDL 235 (275)
T ss_pred Hc---CceEEEEECCCHHhc
Confidence 32 347899999985433
No 136
>TIGR01662 HAD-SF-IIIA HAD-superfamily hydrolase, subfamily IIIA. In the case of histidinol phosphatase and PNK-3'-phosphatase, this model represents a domain of a bifunctional system. In the histidinol phosphatase HisB, a C-terminal domain is an imidazoleglycerol-phosphate dehydratase which catalyzes a related step in histidine biosynthesis. In PNK-3'-phosphatase, N- and C-terminal domains constitute the polynucleotide kinase and DNA-binding components of the enzyme.
Probab=52.98 E-value=12 Score=34.09 Aligned_cols=12 Identities=58% Similarity=0.852 Sum_probs=10.7
Q ss_pred eEEEeCcchhhh
Q 004493 144 GIVFDLDETLIV 155 (749)
Q Consensus 144 ~lVfDLDeTLI~ 155 (749)
+|+||+|+||+.
T Consensus 2 ~~~~D~dgtL~~ 13 (132)
T TIGR01662 2 GVVLDLDGTLTD 13 (132)
T ss_pred EEEEeCCCceec
Confidence 589999999994
No 137
>PLN02151 trehalose-phosphatase
Probab=52.75 E-value=14 Score=41.25 Aligned_cols=26 Identities=19% Similarity=0.293 Sum_probs=22.4
Q ss_pred chhHHHHHHhhcceeeEEEeCcchhh
Q 004493 129 GLYNSCLTMLNLRCLGIVFDLDETLI 154 (749)
Q Consensus 129 g~y~~~~~lL~~R~L~lVfDLDeTLI 154 (749)
..++..+.+.+.++++|+||+||||+
T Consensus 85 ~~~~~~~~~~~~~~~ll~lDyDGTL~ 110 (354)
T PLN02151 85 NMFEEILHKSEGKQIVMFLDYDGTLS 110 (354)
T ss_pred HHHHHHHHhhcCCceEEEEecCccCC
Confidence 46777777778899999999999999
No 138
>TIGR01456 CECR5 HAD-superfamily class IIA hydrolase, TIGR01456, CECR5. The Schizosaccharomyces pombe sequence (EGAD|138276) is annotated as "phosphatidyl synthase," however this is due entirely to a C-terminal region of the protein (outside the region of similarity of this model) which is highly homologous to a family of CDP-alcohol phosphatidyltransferases. (Thus, the annotation of GP|4226073 from C. elegans as similar to phosphatidyl synthase, is a mistake as this gene does not contain the C-terminal portion). The physical connection of the phosphatidyl synthase and the HAD-superfamily hydrolase domain in S. pombe may, however, be an important clue to the substrate for the hydrolases in this equivalog.
Probab=52.58 E-value=9.8 Score=40.78 Aligned_cols=28 Identities=29% Similarity=0.457 Sum_probs=21.6
Q ss_pred eeEEEeCcchhhhhccccchHHHHHHHHhh
Q 004493 143 LGIVFDLDETLIVANTMRSFEDRIEALLRK 172 (749)
Q Consensus 143 L~lVfDLDeTLI~A~T~~sfe~ri~~l~~~ 172 (749)
++++||+||||+..... ++.-.++++..
T Consensus 1 ~~~ifD~DGvL~~g~~~--i~ga~eal~~L 28 (321)
T TIGR01456 1 FGFAFDIDGVLFRGKKP--IAGASDALRRL 28 (321)
T ss_pred CEEEEeCcCceECCccc--cHHHHHHHHHH
Confidence 58999999999976654 77777776543
No 139
>TIGR01484 HAD-SF-IIB HAD-superfamily hydrolase, subfamily IIB. The IIB subfamily consists of Trehalose-6-phosphatase (TIGR00685), plant and cyanobacterial Sucrose-phosphatase and a closely related group of bacterial and archaeal sequences, eukaryotic phosphomannomutase (pfam03332), a large subfamily ("Cof-like hydrolases", TIGR00099) containing many closely related bacterial sequences, a hypothetical equivalog containing the E. coli YedP protein, as well as two small clusters containing sequences whose relationship to the other groups is unclear.
Probab=51.82 E-value=11 Score=36.63 Aligned_cols=13 Identities=54% Similarity=0.846 Sum_probs=11.2
Q ss_pred EEEeCcchhhhhc
Q 004493 145 IVFDLDETLIVAN 157 (749)
Q Consensus 145 lVfDLDeTLI~A~ 157 (749)
|++|+||||+...
T Consensus 2 i~~D~DgTL~~~~ 14 (204)
T TIGR01484 2 LFFDLDGTLLDPN 14 (204)
T ss_pred EEEeCcCCCcCCC
Confidence 7899999999754
No 140
>PLN03017 trehalose-phosphatase
Probab=51.43 E-value=9.8 Score=42.61 Aligned_cols=27 Identities=15% Similarity=0.230 Sum_probs=23.6
Q ss_pred cchhHHHHHHhhcceeeEEEeCcchhh
Q 004493 128 SGLYNSCLTMLNLRCLGIVFDLDETLI 154 (749)
Q Consensus 128 ~g~y~~~~~lL~~R~L~lVfDLDeTLI 154 (749)
+..++.-....+.+++.|++|+||||+
T Consensus 97 l~~~~~~~~~~~~k~~llflD~DGTL~ 123 (366)
T PLN03017 97 LEMFEQIMEASRGKQIVMFLDYDGTLS 123 (366)
T ss_pred HHHHHHHHHHhcCCCeEEEEecCCcCc
Confidence 356777788889999999999999999
No 141
>PRK00192 mannosyl-3-phosphoglycerate phosphatase; Reviewed
Probab=50.03 E-value=12 Score=38.62 Aligned_cols=30 Identities=37% Similarity=0.304 Sum_probs=19.6
Q ss_pred eeEEEeCcchhhhhccccchHHHHHHHHhhh
Q 004493 143 LGIVFDLDETLIVANTMRSFEDRIEALLRKI 173 (749)
Q Consensus 143 L~lVfDLDeTLI~A~T~~sfe~ri~~l~~~~ 173 (749)
-.|++||||||+.... ...+.-+++++...
T Consensus 5 kli~~DlDGTLl~~~~-~~~~~~~~ai~~l~ 34 (273)
T PRK00192 5 LLVFTDLDGTLLDHHT-YSYEPAKPALKALK 34 (273)
T ss_pred eEEEEcCcccCcCCCC-cCcHHHHHHHHHHH
Confidence 3689999999997432 23455566665543
No 142
>PLN02887 hydrolase family protein
Probab=48.39 E-value=16 Score=43.18 Aligned_cols=36 Identities=25% Similarity=0.278 Sum_probs=24.2
Q ss_pred hcceeeEEEeCcchhhhhccccchHHHHHHHHhhhcC
Q 004493 139 NLRCLGIVFDLDETLIVANTMRSFEDRIEALLRKIST 175 (749)
Q Consensus 139 ~~R~L~lVfDLDeTLI~A~T~~sfe~ri~~l~~~~~~ 175 (749)
..+-=.|++||||||+.... .--+..+++++++...
T Consensus 305 ~~~iKLIa~DLDGTLLn~d~-~Is~~t~eAI~kl~ek 340 (580)
T PLN02887 305 KPKFSYIFCDMDGTLLNSKS-QISETNAKALKEALSR 340 (580)
T ss_pred ccCccEEEEeCCCCCCCCCC-ccCHHHHHHHHHHHHC
Confidence 33333689999999996532 1136778888887653
No 143
>PLN02779 haloacid dehalogenase-like hydrolase family protein
Probab=48.18 E-value=7.6 Score=40.96 Aligned_cols=14 Identities=29% Similarity=0.617 Sum_probs=12.0
Q ss_pred eEEEeCcchhhhhc
Q 004493 144 GIVFDLDETLIVAN 157 (749)
Q Consensus 144 ~lVfDLDeTLI~A~ 157 (749)
+|+||+||||+.+.
T Consensus 42 ~VIFDlDGTLvDS~ 55 (286)
T PLN02779 42 ALLFDCDGVLVETE 55 (286)
T ss_pred EEEEeCceeEEccc
Confidence 68999999999644
No 144
>cd00873 KU80 Ku-core domain, Ku80 subfamily; Ku80 is a subunit of the Ku protein, which plays a key role in multiple nuclear processes such as DNA repair, chromosome maintenance, transcription regulation, and V(D)J recombination. The mechanism underlying the regulation of all the diverse functions of Ku is still unclear, although it seems that Ku is a multifunctional protein that works in nuclei. In mammalian cells, the Ku heterodimer recruits the catalytic subunit of DNA-dependent protein kinase (DNA-PK), which is dependent on its association with the Ku70/80 heterodimer bound to DNA for its protein kinase activity.
Probab=47.73 E-value=64 Score=34.56 Aligned_cols=84 Identities=17% Similarity=0.225 Sum_probs=57.7
Q ss_pred ccceEEeeeccCCCCCCchhhhhhhcccceeEeeccCCC--CcHHHHHHHHHhhhcccceEEec--CCCceeEEEEeeec
Q 004493 37 FDEIRISYFSEASERCPPLAVLHTITASGICFKMESKSS--DNIQLHLLHSSCIRENKTAVMPL--GLTEELHLVAMYSR 112 (749)
Q Consensus 37 ~~~i~i~~~~~~~erc~pl~vlh~ia~~~~~~~~~~~~~--~~~~l~~lH~~c~~enKtaVv~~--~~~~ElhLvam~s~ 112 (749)
..+|.|.+|-+.++- |+. |.+. ...|-.-.... ...++..|+.+|.+.+|.||++. ..+++.+|+|+...
T Consensus 96 ~~~l~ilgF~~~~~i-~~~---~~~~--~s~~l~P~~~~~~~~~a~~aL~~am~~~~k~aI~r~v~r~~~~p~l~aL~P~ 169 (300)
T cd00873 96 SKGLDILGFIKASNV-PRY---YLMG--ESSYVVPQQDDEAAALAFSALVRALAELDKYAIARYVYKDNSEPQLGVLFPR 169 (300)
T ss_pred CCceEEEeeccHHHC-Chh---heeC--CcEEEEcCCCChhHHHHHHHHHHHHHhCCCEEEEEEEEcCCCCcEEEEEecc
Confidence 578999999887643 332 3332 34444433211 27899999999999999999998 55788999999887
Q ss_pred CCCCCccEEEEEeec
Q 004493 113 NNEKQYPCFWAFSVG 127 (749)
Q Consensus 113 ~~~~~~p~Fw~f~v~ 127 (749)
... ...||+....+
T Consensus 170 ~~~-~~~~l~l~~LP 183 (300)
T cd00873 170 IKE-DYECLVLVRLP 183 (300)
T ss_pred ccC-CCCEEEEEecC
Confidence 532 24566655444
No 145
>cd00788 KU70 Ku-core domain, Ku70 subfamily; Ku70 is a subunit of the Ku protein, which plays a key role in multiple nuclear processes such as DNA repair, chromosome maintenance, transcription regulation, and V(D)J recombination. The mechanism underlying the regulation of all the diverse functions of Ku is still unclear, although it seems that Ku is a multifunctional protein that works in the nuclei. In mammalian cells, the Ku heterodimer recruits the catalytic subunit of DNA-dependent protein kinase (DNA-PK), which is dependent on its association with the Ku70/80 heterodimer bound to DNA for its protein kinase activity.
Probab=47.51 E-value=70 Score=34.09 Aligned_cols=85 Identities=22% Similarity=0.266 Sum_probs=56.3
Q ss_pred cccceEEeeeccCCCCCCchhhhhhhcccceeEeeccCC----CCcHHHHHHHHHhhhcccceEEec--CCCceeEEEEe
Q 004493 36 VFDEIRISYFSEASERCPPLAVLHTITASGICFKMESKS----SDNIQLHLLHSSCIRENKTAVMPL--GLTEELHLVAM 109 (749)
Q Consensus 36 ~~~~i~i~~~~~~~erc~pl~vlh~ia~~~~~~~~~~~~----~~~~~l~~lH~~c~~enKtaVv~~--~~~~ElhLvam 109 (749)
-..+|+|.+|-+.++ -+| .|.+. ...|-. +.. ....++..|+.+|.+.+|.||++. ..+..-+|||+
T Consensus 93 ~~~~l~ilgF~~~~~-i~~---~~~~~--~s~fl~-P~~~~~~gs~~af~aL~~am~~~~kvaIa~~v~r~~~~p~l~aL 165 (287)
T cd00788 93 GEPGLRLIGFKPRST-LKP---YHNIK--KSYFIY-PDESDYKGSTRLFAALLRSCLKKNKVAICWYILRKNSPPRLVAL 165 (287)
T ss_pred CCCceEEEeeccHHH-CCh---hhccC--CceeEe-cCcccccCcHHHHHHHHHHHHhcCcEEEEEEEecCCCCCEEEEE
Confidence 357899999997773 222 24443 233333 222 237799999999999999999998 33446699999
Q ss_pred eecCCCC-------CccEEEEEeec
Q 004493 110 YSRNNEK-------QYPCFWAFSVG 127 (749)
Q Consensus 110 ~s~~~~~-------~~p~Fw~f~v~ 127 (749)
....... ..+|||....+
T Consensus 166 ~P~~~~~~~~~~~~~~~gl~l~~LP 190 (287)
T cd00788 166 VPQEEELDEPDGQVLPPGFHLVPLP 190 (287)
T ss_pred eccccccCCCCCccCCCcEEEEecC
Confidence 7764211 14678776554
No 146
>TIGR02471 sucr_syn_bact_C sucrose phosphate synthase, sucrose phosphatase-like domain, bacterial. Sucrose phosphate synthase (SPS) and sucrose phosphate phosphatase (SPP) are the last two enzymes of sucrose biosynthesis. In cyanobacteria and plants, the C-terminal region of most or all versions of SPS has a domain homologous to the known SPP. This domain may serve a binding or regulatory rather than catalytic function. Sequences in this family are bacterial C-terminal regions found in all but two of the putative bacterial sucrose phosphate synthases described by TIGR02472.
Probab=46.83 E-value=13 Score=37.42 Aligned_cols=23 Identities=35% Similarity=0.462 Sum_probs=16.8
Q ss_pred EEEeCcchhhhhccccchHHHHHHH
Q 004493 145 IVFDLDETLIVANTMRSFEDRIEAL 169 (749)
Q Consensus 145 lVfDLDeTLI~A~T~~sfe~ri~~l 169 (749)
|++||||||+. +.+.+.++.+.+
T Consensus 2 i~~DlDgTLl~--~~~~~~~~~~~~ 24 (236)
T TIGR02471 2 IITDLDNTLLG--DDEGLASFVELL 24 (236)
T ss_pred eEEeccccccC--CHHHHHHHHHHH
Confidence 78999999995 456666665444
No 147
>TIGR01545 YfhB_g-proteo haloacid dehalogenase superfamily, subfamily IF hydrolase, YfhB. The gene name comes from the E. coli gene. There is currently no information regarding the function of this gene.
Probab=43.84 E-value=9.8 Score=38.52 Aligned_cols=38 Identities=13% Similarity=0.147 Sum_probs=31.5
Q ss_pred EeeCCChhhHHH-HHhhhccccEEEEEEeCCcHHHHHHHHHh
Q 004493 260 VRLRPAWEDLRS-YLTARGRKRFEVYVCTMAERDYALEMWRL 300 (749)
Q Consensus 260 VKLRPgv~ELr~-FL~a~~sk~FELyVyTmGtR~YA~eI~rL 300 (749)
++++|++.+++. .|+ ++-+.+.|.|++.+.|+..+++.
T Consensus 93 ~~l~pga~e~L~~~l~---~~G~~v~IvSas~~~~~~~ia~~ 131 (210)
T TIGR01545 93 VTAFPLVAERLRQYLE---SSDADIWLITGSPQPLVEAVYFD 131 (210)
T ss_pred CCCCccHHHHHHHHHH---hCCCEEEEEcCCcHHHHHHHHHh
Confidence 367899999553 554 56899999999999999999976
No 148
>PF05116 S6PP: Sucrose-6F-phosphate phosphohydrolase; InterPro: IPR006380 This family of sequences represent sucrose phosphate phosphohydrolase (SPP) from plants and cyanobacteria []. SPP is a member of the Class IIB subfamily of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. SPP catalyzes the final step in the biosynthesis of sucrose, a critically important molecule for plants. Sucrose phosphate synthase (SPS), the prior step in the biosynthesis of sucrose contains a domain which exhibits considerable similarity to SPP albeit without conservation of the catalytic residues. The catalytic machinery of the synthase resides in another domain. It seems likely that the phosphatase-like domain is involved in substrate binding, possibly binding both substrates in a "product-like" orientation prior to ligation by the synthase catalytic domain.; PDB: 1TJ5_A 2B1Q_A 1TJ4_A 1S2O_A 1U2T_A 2D2V_A 1TJ3_A 1U2S_A 2B1R_A 3GYG_B ....
Probab=43.57 E-value=15 Score=38.08 Aligned_cols=13 Identities=46% Similarity=0.347 Sum_probs=11.7
Q ss_pred eeeEEEeCcchhh
Q 004493 142 CLGIVFDLDETLI 154 (749)
Q Consensus 142 ~L~lVfDLDeTLI 154 (749)
++.||.|||+|||
T Consensus 2 ~~ll~sDlD~Tl~ 14 (247)
T PF05116_consen 2 PRLLASDLDGTLI 14 (247)
T ss_dssp SEEEEEETBTTTB
T ss_pred CEEEEEECCCCCc
Confidence 4679999999999
No 149
>PF00035 dsrm: Double-stranded RNA binding motif; InterPro: IPR001159 The DsRBD domain is found in a variety of RNA-binding proteins with different structures and exhibiting a diversity of functions []. It is involved in localisation of at least five different mRNAs in the early Drosophila embryo and by interferon-induced protein kinase in humans, which is part of the cellular response to dsRNA.; GO: 0003725 double-stranded RNA binding, 0005622 intracellular; PDB: 1EKZ_A 1STU_A 1QU6_A 2L2M_A 3ADJ_A 1WHN_A 3LLH_B 2B7V_A 2L3J_A 1UHZ_A ....
Probab=43.20 E-value=12 Score=30.07 Aligned_cols=38 Identities=13% Similarity=0.042 Sum_probs=30.3
Q ss_pred chHHHHHHHhhhCCeeeeeccccccccc---chhhhhhhhh
Q 004493 707 PSGVLQDIAMKCGTKVEFRPALVASTEL---QFSIEVLYAL 744 (749)
Q Consensus 707 s~gvLqEI~~kC~sKVEfrs~l~~s~dL---qFSvEv~~~~ 744 (749)
++.+|+|++++.+..++|....+.+..- +|.+++.+-+
T Consensus 1 ~~~~L~e~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~i~~ 41 (67)
T PF00035_consen 1 PKSRLNEYCQKNKFPPPYYYIEEEGPSHHRPRFICTVYIDG 41 (67)
T ss_dssp HHHHHHHHHHHCTSSEEEEEEEEESSSSSSEEEEEEEEETT
T ss_pred CHHHHHHHHHHcCCCCCEEEEEEeCCCCCCceEEEEEEECC
Confidence 4689999999999999999776666532 7999887743
No 150
>COG2503 Predicted secreted acid phosphatase [General function prediction only]
Probab=43.01 E-value=8.9 Score=41.37 Aligned_cols=17 Identities=35% Similarity=0.458 Sum_probs=14.1
Q ss_pred cceeeEEEeCcchhhhh
Q 004493 140 LRCLGIVFDLDETLIVA 156 (749)
Q Consensus 140 ~R~L~lVfDLDeTLI~A 156 (749)
.++-+||+|||||+|.-
T Consensus 77 ~K~~aVvlDlDETvLdN 93 (274)
T COG2503 77 GKKKAVVLDLDETVLDN 93 (274)
T ss_pred CCCceEEEecchHhhcC
Confidence 45579999999999953
No 151
>TIGR01457 HAD-SF-IIA-hyp2 HAD-superfamily subfamily IIA hydrolase, TIGR01457. This hypothetical equivalog is a member of the Class IIA subfamily of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this equivalog are all gram positive (low-GC) bacteria. Sequences found in this model are annotated variously as related to NagD or 4-nitrophenyl phosphatase, and this hypothetical equivalog, of all of those within the Class IIA subfamily, is most closely related to the E. coli NagD enzyme and the PGP_euk equivalog (TIGR01452). However, there is presently no evidence that this hypothetical equivalog has the same function of either those.
Probab=42.95 E-value=14 Score=38.19 Aligned_cols=29 Identities=17% Similarity=0.221 Sum_probs=22.1
Q ss_pred eEEEeCcchhhhhccccchHHHHHHHHhhhc
Q 004493 144 GIVFDLDETLIVANTMRSFEDRIEALLRKIS 174 (749)
Q Consensus 144 ~lVfDLDeTLI~A~T~~sfe~ri~~l~~~~~ 174 (749)
.++||+||||+.... .+...+++++++..
T Consensus 3 ~~~~D~DGtl~~~~~--~i~~a~~~l~~l~~ 31 (249)
T TIGR01457 3 GYLIDLDGTMYKGKE--RIPEAETFVHELQK 31 (249)
T ss_pred EEEEeCCCceEcCCe--eCcCHHHHHHHHHH
Confidence 589999999997764 46667777776654
No 152
>COG2179 Predicted hydrolase of the HAD superfamily [General function prediction only]
Probab=42.32 E-value=14 Score=37.78 Aligned_cols=21 Identities=29% Similarity=0.430 Sum_probs=16.1
Q ss_pred HHhhcceeeEEEeCcchhhhh
Q 004493 136 TMLNLRCLGIVFDLDETLIVA 156 (749)
Q Consensus 136 ~lL~~R~L~lVfDLDeTLI~A 156 (749)
.|.++--=++++|||+|||-=
T Consensus 22 ~L~~~Gikgvi~DlDNTLv~w 42 (175)
T COG2179 22 ILKAHGIKGVILDLDNTLVPW 42 (175)
T ss_pred HHHHcCCcEEEEeccCceecc
Confidence 455555678999999999943
No 153
>TIGR02772 Ku_bact Ku protein, prokaryotic. Members of this protein family are Ku proteins of non-homologous end joining (NHEJ) DNA repair in bacteria and in at least one member of the archaea (Archaeoglobus fulgidus). Most members are encoded by a gene adjacent to the gene for the DNA ligase that completes the repair. The NHEJ system is broadly but rather sparsely distributed, being present in about one fifth of the first 250 completed prokarytotic genomes. A few species (e.g. Archaeoglobus fulgidus and Bradyrhizobium japonicum) have multiple copies that appear to represent recent paralogous family expansion.
Probab=41.78 E-value=91 Score=33.32 Aligned_cols=78 Identities=15% Similarity=0.164 Sum_probs=53.7
Q ss_pred cccceEEeeeccCCCCCCchhhhhhhcccceeEeeccCCCCcHHHHHHHHHhhhcccceEEec-CCCceeEEEEeeecCC
Q 004493 36 VFDEIRISYFSEASERCPPLAVLHTITASGICFKMESKSSDNIQLHLLHSSCIRENKTAVMPL-GLTEELHLVAMYSRNN 114 (749)
Q Consensus 36 ~~~~i~i~~~~~~~erc~pl~vlh~ia~~~~~~~~~~~~~~~~~l~~lH~~c~~enKtaVv~~-~~~~ElhLvam~s~~~ 114 (749)
-.+.|.|.+|-+.++ .+|. |+ +-.|-+.+...-..++..|+.+|.+.+|.||++. -++.| ||+|+....+
T Consensus 86 ~~~~i~I~gFv~~~~-i~~~---y~----~~syyl~P~~~~~~a~~~L~~Al~~~~kvaIar~v~r~r~-~l~aL~P~~~ 156 (258)
T TIGR02772 86 STKTIEIEAFVDADE-IDPI---YF----DTPYYLAPDKGGEKAYALLREALEDTGKVGIAKVVLRGRE-RLAALRPVGK 156 (258)
T ss_pred CCCeEEEEEEeCHHH-CChh---ee----CCCEEEccCCCchHHHHHHHHHHHHcCCEEEEEEEEcCCc-EEEEEEECCC
Confidence 356899999988755 4442 32 2235555544447899999999999999999988 22455 7999987743
Q ss_pred CCCccEEEEEeec
Q 004493 115 EKQYPCFWAFSVG 127 (749)
Q Consensus 115 ~~~~p~Fw~f~v~ 127 (749)
|||....+
T Consensus 157 -----gL~l~~Lp 164 (258)
T TIGR02772 157 -----GLVLTTLR 164 (258)
T ss_pred -----eEEEEECC
Confidence 55554433
No 154
>smart00775 LNS2 LNS2 domain. This domain is found in Saccharomyces cerevisiae protein SMP2, proteins with an N-terminal lipin domain and phosphatidylinositol transfer proteins. SMP2 is involved in plasmid maintenance and respiration. Lipin proteins are involved in adipose tissue development and insulin resistance.
Probab=41.26 E-value=21 Score=34.78 Aligned_cols=22 Identities=14% Similarity=0.203 Sum_probs=15.6
Q ss_pred eEEEeCcchhhhhccccchHHH
Q 004493 144 GIVFDLDETLIVANTMRSFEDR 165 (749)
Q Consensus 144 ~lVfDLDeTLI~A~T~~sfe~r 165 (749)
.+++|+||||+...+...+-+.
T Consensus 1 iVisDIDGTL~~sd~~~~~~~~ 22 (157)
T smart00775 1 IVISDIDGTITKSDVLGHVVPI 22 (157)
T ss_pred CEEEecCCCCcccccccccccc
Confidence 3789999999977654443333
No 155
>TIGR01656 Histidinol-ppas histidinol-phosphate phosphatase family domain. This domain is a member of the haloacid-dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. This superfamily is distinguished by the presence of three motifs: an N-terminal motif containing the nucleophilic aspartate, a central motif containing an conserved serine or threonine, and a C-terminal motif containing a conserved lysine (or arginine) and conserved aspartates. More specifically, the domian modelled here is a member of subfamily III of the HAD-superfamily by virtue of lacking a "capping" domain in either of the two common positions, between motifs 1 and 2, or between motifs 2 and 3.
Probab=40.21 E-value=23 Score=33.36 Aligned_cols=15 Identities=13% Similarity=0.226 Sum_probs=12.5
Q ss_pred eEEEeCcchhhhhcc
Q 004493 144 GIVFDLDETLIVANT 158 (749)
Q Consensus 144 ~lVfDLDeTLI~A~T 158 (749)
++.||+|+||+.-..
T Consensus 2 ~~~~d~dgtl~~~~~ 16 (147)
T TIGR01656 2 ALFLDRDGVINEDTV 16 (147)
T ss_pred eEEEeCCCceeccCC
Confidence 578999999997664
No 156
>KOG2914 consensus Predicted haloacid-halidohydrolase and related hydrolases [General function prediction only]
Probab=39.90 E-value=96 Score=32.68 Aligned_cols=82 Identities=16% Similarity=0.059 Sum_probs=50.2
Q ss_pred EEEeeCCChhhHHHHHhhhccccEEEEEEeCCcHHHHHHHHHhcCCCCCcccccccCCcEEEccCC-----------Ccc
Q 004493 258 VLVRLRPAWEDLRSYLTARGRKRFEVYVCTMAERDYALEMWRLLDPESNLINTKELLDRIVCVKSG-----------SRK 326 (749)
Q Consensus 258 ~~VKLRPgv~ELr~FL~a~~sk~FELyVyTmGtR~YA~eI~rLLDPdg~LFg~~~l~~RIISresg-----------~~K 326 (749)
.-.++=||+..|..-|. ++-=-+-++|..++.++....+-+ +.+|. .|+.+++-++. ..+
T Consensus 89 ~~~~~~PGa~kLv~~L~---~~gip~alat~s~~~~~~~k~~~~---~~~~~---~f~~~v~~d~~~v~~gKP~Pdi~l~ 159 (222)
T KOG2914|consen 89 MNSILMPGAEKLVNHLK---NNGIPVALATSSTSASFELKISRH---EDIFK---NFSHVVLGDDPEVKNGKPDPDIYLK 159 (222)
T ss_pred cccccCCcHHHHHHHHH---hCCCCeeEEecCCcccHHHHHHHh---hHHHH---hcCCCeecCCccccCCCCCchHHHH
Confidence 45566689999888886 566778899999777666555441 22233 55677773221 124
Q ss_pred chhhhccCCCCCCcEEEEEcCCccc
Q 004493 327 SLFNVFQDGTCHPKMALVIDDRLKV 351 (749)
Q Consensus 327 sL~~LFp~g~c~~~mvVIIDDR~dV 351 (749)
..++ |+.. .++.+||.+|...-
T Consensus 160 A~~~-l~~~--~~~k~lVfeds~~G 181 (222)
T KOG2914|consen 160 AAKR-LGVP--PPSKCLVFEDSPVG 181 (222)
T ss_pred HHHh-cCCC--CccceEEECCCHHH
Confidence 4443 3321 14788888887654
No 157
>cd00048 DSRM Double-stranded RNA binding motif. Binding is not sequence specific but is highly specific for double stranded RNA. Found in a variety of proteins including dsRNA dependent protein kinase PKR, RNA helicases, Drosophila staufen protein, E. coli RNase III, RNases H1, and dsRNA dependent adenosine deaminases.
Probab=39.44 E-value=14 Score=29.31 Aligned_cols=38 Identities=24% Similarity=0.322 Sum_probs=29.1
Q ss_pred chHHHHHHHhhh-CCeeeeecccccccc--cchhhhhhhhh
Q 004493 707 PSGVLQDIAMKC-GTKVEFRPALVASTE--LQFSIEVLYAL 744 (749)
Q Consensus 707 s~gvLqEI~~kC-~sKVEfrs~l~~s~d--LqFSvEv~~~~ 744 (749)
|++.|+|++++- +.+++|...-....+ -.|.++|.+.+
T Consensus 2 p~~~L~e~~~~~~~~~~~y~~~~~~g~~~~~~f~~~v~i~~ 42 (68)
T cd00048 2 PKSLLQELAQKRGKPLPEYELVEEEGPDHAPRFTVEVTVGG 42 (68)
T ss_pred hHHHHHHHHHHcCCCCCeEEEeeeeCCCCCCeEEEEEEECC
Confidence 678999999999 779999875444433 67888877654
No 158
>PRK10187 trehalose-6-phosphate phosphatase; Provisional
Probab=39.43 E-value=15 Score=38.47 Aligned_cols=15 Identities=40% Similarity=0.437 Sum_probs=13.2
Q ss_pred eeeEEEeCcchhhhh
Q 004493 142 CLGIVFDLDETLIVA 156 (749)
Q Consensus 142 ~L~lVfDLDeTLI~A 156 (749)
++.|+||+||||+..
T Consensus 14 ~~li~~D~DGTLl~~ 28 (266)
T PRK10187 14 NYAWFFDLDGTLAEI 28 (266)
T ss_pred CEEEEEecCCCCCCC
Confidence 588999999999964
No 159
>smart00358 DSRM Double-stranded RNA binding motif.
Probab=39.38 E-value=14 Score=29.54 Aligned_cols=38 Identities=24% Similarity=0.357 Sum_probs=28.6
Q ss_pred chHHHHHHHhhhCCeeeeecccccccc--cchhhhhhhhh
Q 004493 707 PSGVLQDIAMKCGTKVEFRPALVASTE--LQFSIEVLYAL 744 (749)
Q Consensus 707 s~gvLqEI~~kC~sKVEfrs~l~~s~d--LqFSvEv~~~~ 744 (749)
|+..|+|++++-|.+++|+..-....+ -.|.++|.+-+
T Consensus 1 p~~~L~e~~~~~~~~~~y~~~~~~g~~~~~~f~~~v~i~~ 40 (67)
T smart00358 1 PKSLLQELAQKRGLPPEYELVKEEGPDHAPRFTVTVKVGG 40 (67)
T ss_pred CchHHHHHHHHCCCCCEEEEEeeeCCCCCCcEEEEEEECC
Confidence 467899999999999999876433333 37888887643
No 160
>TIGR00685 T6PP trehalose-phosphatase. At least 18 distinct sequences from Arabidopsis have been identified, roughly half of these are of the fungal type, with a fused synthase and half are like the bacterial members having only the phosphatase domain. It has been suggested that trehalose is being used in Arabidopsis as a regulatory molecule in development and possibly other processes.
Probab=39.34 E-value=15 Score=37.50 Aligned_cols=15 Identities=40% Similarity=0.439 Sum_probs=13.2
Q ss_pred ceeeEEEeCcchhhh
Q 004493 141 RCLGIVFDLDETLIV 155 (749)
Q Consensus 141 R~L~lVfDLDeTLI~ 155 (749)
|+..|+||+||||+-
T Consensus 2 ~~~~l~lD~DGTL~~ 16 (244)
T TIGR00685 2 RKRAFFFDYDGTLSE 16 (244)
T ss_pred CcEEEEEecCccccC
Confidence 578899999999985
No 161
>PF02839 CBM_5_12: Carbohydrate binding domain; InterPro: IPR003610 A carbohydrate-binding module (CBM) is defined as a contiguous amino acid sequence within a carbohydrate-active enzyme with a discreet fold having carbohydrate-binding activity. A few exceptions are CBMs in cellulosomal scaffolding proteins and rare instances of independent putative CBMs. The requirement of CBMs existing as modules within larger enzymes sets this class of carbohydrate-binding protein apart from other non-catalytic sugar binding proteins such as lectins and sugar transport proteins. CBMs were previously classified as cellulose-binding domains (CBDs) based on the initial discovery of several modules that bound cellulose [, ]. However, additional modules in carbohydrate-active enzymes are continually being found that bind carbohydrates other than cellulose yet otherwise meet the CBM criteria, hence the need to reclassify these polypeptides using more inclusive terminology. Previous classification of cellulose-binding domains were based on amino acid similarity. Groupings of CBDs were called "Types" and numbered with roman numerals (e.g. Type I or Type II CBDs). In keeping with the glycoside hydrolase classification, these groupings are now called families and numbered with Arabic numerals. Families 1 to 13 are the same as Types I to XIII. For a detailed review on the structure and binding modes of CBMs see []. This entry represents CBM5 from CAZY and CBM12 from CAZY. These modules have a core structure consisting of a 3-stranded meander beta-sheet, which contain six aromatic groups that may be important for binding. CBM5/12 is found in proteins such as chitinase A1, chitinase B [], and endoglucanase Z []. The overall topology of the CBM is structurally similar to the C-terminal chitin-binding domains (ChBD) of chitinase A1 and chitinase B, however the binding mechanism for the ChBD may be different from that of the CBM [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0030246 carbohydrate binding, 0005975 carbohydrate metabolic process, 0005576 extracellular region; PDB: 1ED7_A 1W1V_A 1E15_B 1UR8_A 1E6Z_B 1E6P_A 1W1T_A 1W1P_B 1UR9_A 1E6R_A ....
Probab=38.23 E-value=17 Score=27.85 Aligned_cols=21 Identities=29% Similarity=0.412 Sum_probs=16.0
Q ss_pred HHhhcCccccCCeEEEeeccc
Q 004493 201 QYAENDQVNENGKVIKVQSEV 221 (749)
Q Consensus 201 qy~~~d~V~~nG~~~k~q~E~ 221 (749)
.|..+|.|++||++++++--.
T Consensus 9 ~Y~~Gd~V~~~g~~y~a~~~~ 29 (41)
T PF02839_consen 9 TYNAGDRVSYNGKLYQAKWWT 29 (41)
T ss_dssp EE-TT-EEEETTEEEEESSSC
T ss_pred EEcCCCEEEECCCEEEEeecc
Confidence 478899999999999987644
No 162
>PRK06698 bifunctional 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase/phosphatase; Validated
Probab=37.83 E-value=12 Score=41.83 Aligned_cols=14 Identities=36% Similarity=0.800 Sum_probs=12.1
Q ss_pred eEEEeCcchhhhhc
Q 004493 144 GIVFDLDETLIVAN 157 (749)
Q Consensus 144 ~lVfDLDeTLI~A~ 157 (749)
+++|||||||+.+.
T Consensus 243 ~vIFDlDGTLiDs~ 256 (459)
T PRK06698 243 ALIFDMDGTLFQTD 256 (459)
T ss_pred heeEccCCceecch
Confidence 68999999999654
No 163
>TIGR01458 HAD-SF-IIA-hyp3 HAD-superfamily subfamily IIA hydrolase, TIGR01458. This hypothetical equivalog is a member of the IIA subfamily (TIGR01460) of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. One sequence (GP|10716807) has been annotated as a "phospholysine phosphohistidine inorganic pyrophosphatase," probably in reference to studies on similarly described (but unsequenced) enzymes from bovine and rat tissues. However, the supporting information for this annotation has never been published.
Probab=36.85 E-value=19 Score=37.43 Aligned_cols=31 Identities=19% Similarity=0.329 Sum_probs=22.7
Q ss_pred eEEEeCcchhhhhcc--ccchHHHHHHHHhhhc
Q 004493 144 GIVFDLDETLIVANT--MRSFEDRIEALLRKIS 174 (749)
Q Consensus 144 ~lVfDLDeTLI~A~T--~~sfe~ri~~l~~~~~ 174 (749)
.++|||||||+..++ .+-++.-.++++.+..
T Consensus 3 ~i~~D~DGtl~~~~~~~~~~~~~a~~al~~l~~ 35 (257)
T TIGR01458 3 GVLLDISGVLYISDAKSGVAVPGSQEAVKRLRG 35 (257)
T ss_pred EEEEeCCCeEEeCCCcccCcCCCHHHHHHHHHH
Confidence 589999999998775 1246777777766543
No 164
>PLN02382 probable sucrose-phosphatase
Probab=35.62 E-value=25 Score=39.53 Aligned_cols=17 Identities=41% Similarity=0.362 Sum_probs=14.4
Q ss_pred cceeeEEEeCcchhhhh
Q 004493 140 LRCLGIVFDLDETLIVA 156 (749)
Q Consensus 140 ~R~L~lVfDLDeTLI~A 156 (749)
.-+|.||-|||||||..
T Consensus 7 ~~~~lI~sDLDGTLL~~ 23 (413)
T PLN02382 7 SPRLMIVSDLDHTMVDH 23 (413)
T ss_pred CCCEEEEEcCCCcCcCC
Confidence 34799999999999954
No 165
>PRK10444 UMP phosphatase; Provisional
Probab=33.94 E-value=24 Score=36.81 Aligned_cols=28 Identities=25% Similarity=0.377 Sum_probs=21.3
Q ss_pred eEEEeCcchhhhhccccchHHHHHHHHhhh
Q 004493 144 GIVFDLDETLIVANTMRSFEDRIEALLRKI 173 (749)
Q Consensus 144 ~lVfDLDeTLI~A~T~~sfe~ri~~l~~~~ 173 (749)
.++|||||||+...+. ++.-++++++..
T Consensus 3 ~v~~DlDGtL~~~~~~--~p~a~~~l~~L~ 30 (248)
T PRK10444 3 NVICDIDGVLMHDNVA--VPGAAEFLHRIL 30 (248)
T ss_pred EEEEeCCCceEeCCee--CccHHHHHHHHH
Confidence 5899999999988743 777777775443
No 166
>PRK14502 bifunctional mannosyl-3-phosphoglycerate synthase/mannosyl-3 phosphoglycerate phosphatase; Provisional
Probab=32.74 E-value=34 Score=41.44 Aligned_cols=33 Identities=27% Similarity=0.176 Sum_probs=23.2
Q ss_pred ceeeEEEeCcchhhhhccccchHHHHHHHHhhhc
Q 004493 141 RCLGIVFDLDETLIVANTMRSFEDRIEALLRKIS 174 (749)
Q Consensus 141 R~L~lVfDLDeTLI~A~T~~sfe~ri~~l~~~~~ 174 (749)
.+-.|++||||||+...+. ..+..+++|++...
T Consensus 415 ~~KLIfsDLDGTLLd~d~~-i~~~t~eAL~~L~e 447 (694)
T PRK14502 415 FKKIVYTDLDGTLLNPLTY-SYSTALDALRLLKD 447 (694)
T ss_pred eeeEEEEECcCCCcCCCCc-cCHHHHHHHHHHHH
Confidence 3457889999999986553 24566777776654
No 167
>PF08645 PNK3P: Polynucleotide kinase 3 phosphatase; InterPro: IPR013954 Polynucleotide kinase 3 phosphatases play a role in the repair of single breaks in DNA induced by DNA-damaging agents such as gamma radiation and camptothecin []. ; PDB: 2FPW_A 2FPR_A 2FPX_A 2FPS_A 2FPU_B 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B 3U7G_A ....
Probab=32.38 E-value=22 Score=34.84 Aligned_cols=16 Identities=44% Similarity=0.621 Sum_probs=11.3
Q ss_pred EEEeCcchhhhhcccc
Q 004493 145 IVFDLDETLIVANTMR 160 (749)
Q Consensus 145 lVfDLDeTLI~A~T~~ 160 (749)
+-||||+|||...+..
T Consensus 3 a~fD~DgTLi~~~s~~ 18 (159)
T PF08645_consen 3 AFFDLDGTLIKTKSGK 18 (159)
T ss_dssp EEE-SCTTTEE-STST
T ss_pred EEEeCCCCccCCCCCC
Confidence 5799999999887654
No 168
>TIGR01452 PGP_euk phosphoglycolate/pyridoxal phosphate phosphatase family. This model is closely related to a family of bacterial sequences including the E. coli NagD and B. subtilus AraL genes which are characterized by the ability to hydrolyze para-nitrophenylphosphate (pNPPases or NPPases). The chlamydomonas PGPase does not catalyze this reaction and so presumably these two groups have different functions and substrate specificities. Many of the genes in this alignment have been annotated as pNPPases due to this association.
Probab=30.69 E-value=29 Score=36.20 Aligned_cols=28 Identities=29% Similarity=0.355 Sum_probs=20.1
Q ss_pred eEEEeCcchhhhhccccchHHHHHHHHhhh
Q 004493 144 GIVFDLDETLIVANTMRSFEDRIEALLRKI 173 (749)
Q Consensus 144 ~lVfDLDeTLI~A~T~~sfe~ri~~l~~~~ 173 (749)
+++||+||||+...+ .++...++|+.+.
T Consensus 4 ~~~~D~DGtl~~~~~--~~~ga~e~l~~L~ 31 (279)
T TIGR01452 4 GFIFDCDGVLWLGER--VVPGAPELLDRLA 31 (279)
T ss_pred EEEEeCCCceEcCCe--eCcCHHHHHHHHH
Confidence 688999999997653 4666666665543
No 169
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=29.34 E-value=1.3e+02 Score=37.60 Aligned_cols=15 Identities=27% Similarity=0.545 Sum_probs=10.8
Q ss_pred ccccchhchhhhhhh
Q 004493 393 VRGGFFKEFDEGLLQ 407 (749)
Q Consensus 393 Vh~~FFk~fDe~l~~ 407 (749)
+|..||+-.++++.|
T Consensus 420 ~rpqYykLIEecISq 434 (1102)
T KOG1924|consen 420 IRPQYYKLIEECISQ 434 (1102)
T ss_pred hhHHHHHHHHHHHHH
Confidence 466677888887766
No 170
>cd00036 ChtBD3 Chitin/cellulose binding domain. Putative carbohydrate binding domain found in many different glycosyl hydrolase enzymes. May occur in tandem arrangements.
Probab=28.65 E-value=32 Score=26.21 Aligned_cols=19 Identities=42% Similarity=0.523 Sum_probs=16.7
Q ss_pred HHhhcCccccCCeEEEeec
Q 004493 201 QYAENDQVNENGKVIKVQS 219 (749)
Q Consensus 201 qy~~~d~V~~nG~~~k~q~ 219 (749)
-|..+|.|++||+.|+++-
T Consensus 7 ~Y~~Gd~V~~~g~~y~a~w 25 (41)
T cd00036 7 VYTAGDLVSYNGKVYKAKW 25 (41)
T ss_pred EecCCCEEEECCeEEEEee
Confidence 4788999999999999865
No 171
>PF00702 Hydrolase: haloacid dehalogenase-like hydrolase; InterPro: IPR005834 This group of hydrolase enzymes is structurally different from the alpha/beta hydrolase family (abhydrolase). This group includes L-2-haloacid dehalogenase, epoxide hydrolases and phosphatases. The structure consists of two domains. One is an inserted four helix bundle, which is the least well conserved region of the alignment, between residues 16 and 96 of HAD1_PSESP. The rest of the fold is composed of the core alpha/beta domain.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 1TE2_A 3NAL_A 3NAM_A 3NAN_A 3A1D_B 3J09_A 3J08_A 2B8E_C 3A1E_A 2VOY_J ....
Probab=27.77 E-value=30 Score=32.97 Aligned_cols=14 Identities=36% Similarity=0.453 Sum_probs=11.6
Q ss_pred eEEEeCcchhhhhc
Q 004493 144 GIVFDLDETLIVAN 157 (749)
Q Consensus 144 ~lVfDLDeTLI~A~ 157 (749)
+|+||.||||+...
T Consensus 3 ~i~fDktGTLt~~~ 16 (215)
T PF00702_consen 3 AICFDKTGTLTQGK 16 (215)
T ss_dssp EEEEECCTTTBESH
T ss_pred EEEEecCCCcccCe
Confidence 58999999997553
No 172
>TIGR01545 YfhB_g-proteo haloacid dehalogenase superfamily, subfamily IF hydrolase, YfhB. The gene name comes from the E. coli gene. There is currently no information regarding the function of this gene.
Probab=27.68 E-value=71 Score=32.42 Aligned_cols=19 Identities=47% Similarity=0.583 Sum_probs=15.4
Q ss_pred eEEEeCcchhhhhccccch
Q 004493 144 GIVFDLDETLIVANTMRSF 162 (749)
Q Consensus 144 ~lVfDLDeTLI~A~T~~sf 162 (749)
..+||+||||+.-.|+..|
T Consensus 7 la~FDfDgTLt~~ds~~~f 25 (210)
T TIGR01545 7 IIFFDLDGTLHQQDMFGSF 25 (210)
T ss_pred EEEEcCCCCCccCccHHHH
Confidence 3689999999988877543
No 173
>TIGR01525 ATPase-IB_hvy heavy metal translocating P-type ATPase. This alignment encompasses two equivalog models for the copper and cadmium-type heavy metal transporting P-type ATPases (TIGR01511 and TIGR01512) as well as those species which score ambiguously between both models. For more comments and references, see the files on TIGR01511 and 01512.
Probab=27.54 E-value=67 Score=37.12 Aligned_cols=42 Identities=21% Similarity=0.137 Sum_probs=36.2
Q ss_pred EEeeCCChhhHHHHHhhhcccc-EEEEEEeCCcHHHHHHHHHhcCC
Q 004493 259 LVRLRPAWEDLRSYLTARGRKR-FEVYVCTMAERDYALEMWRLLDP 303 (749)
Q Consensus 259 ~VKLRPgv~ELr~FL~a~~sk~-FELyVyTmGtR~YA~eI~rLLDP 303 (749)
...+||++.++++.|+ +.- +.++|.|...+.+|.++++.++=
T Consensus 382 ~d~~~~g~~e~l~~L~---~~g~i~v~ivTgd~~~~a~~i~~~lgi 424 (556)
T TIGR01525 382 RDQLRPEAKEAIAALK---RAGGIKLVMLTGDNRSAAEAVAAELGI 424 (556)
T ss_pred cccchHhHHHHHHHHH---HcCCCeEEEEeCCCHHHHHHHHHHhCC
Confidence 4579999999888886 455 99999999999999999999654
No 174
>TIGR01670 YrbI-phosphatas 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family. The Methanosarcina sequence is distinctive in that it is linked to an N-terminal cytidylyltransferase domain (pfam02348) and is annotated as acylneuraminate cytidylyltransferase. This may give some clue as the function of these phosphatases. Several eukaryotic sequences scoring between trusted and noise are also closely related to this function such as the CMP-N-acetylneuraminic acid synthetase from mouse, but in these cases the phosphatase domain is clearly inactive as many of the active site residues are not conserved.
Probab=27.15 E-value=27 Score=33.41 Aligned_cols=67 Identities=13% Similarity=0.091 Sum_probs=40.8
Q ss_pred HHHHHhhhccccEEEEEEeCCcHHHHHHHHHhcCCCCCcccccccCCcEEEccCCCccchhhhccCCCCCCcEEEEEcCC
Q 004493 269 LRSYLTARGRKRFEVYVCTMAERDYALEMWRLLDPESNLINTKELLDRIVCVKSGSRKSLFNVFQDGTCHPKMALVIDDR 348 (749)
Q Consensus 269 Lr~FL~a~~sk~FELyVyTmGtR~YA~eI~rLLDPdg~LFg~~~l~~RIISresg~~KsL~~LFp~g~c~~~mvVIIDDR 348 (749)
..+.|+ .+-+.+.|.|++.+..+..+++.+.=+ .+|. +.+ +....+..+...-...++.++.|.|+
T Consensus 36 ~i~~Lk---~~G~~i~IvTn~~~~~~~~~l~~~gi~-~~~~---------~~~-~k~~~~~~~~~~~~~~~~~~~~vGDs 101 (154)
T TIGR01670 36 GIRCAL---KSGIEVAIITGRKAKLVEDRCKTLGIT-HLYQ---------GQS-NKLIAFSDILEKLALAPENVAYIGDD 101 (154)
T ss_pred HHHHHH---HCCCEEEEEECCCCHHHHHHHHHcCCC-EEEe---------ccc-chHHHHHHHHHHcCCCHHHEEEECCC
Confidence 455776 577999999999999999999885433 2232 111 12222333322111355678888887
Q ss_pred c
Q 004493 349 L 349 (749)
Q Consensus 349 ~ 349 (749)
.
T Consensus 102 ~ 102 (154)
T TIGR01670 102 L 102 (154)
T ss_pred H
Confidence 4
No 175
>PHA02629 A-type inclusion body protein; Provisional
Probab=26.88 E-value=1.3e+02 Score=25.85 Aligned_cols=28 Identities=25% Similarity=0.426 Sum_probs=23.6
Q ss_pred hhhhhHHHHHHhhhhHHHHHHHhhcCcc
Q 004493 181 RIAGMQAEVKRYQDDKNILKQYAENDQV 208 (749)
Q Consensus 181 r~~~~~~evkr~q~D~~lL~qy~~~d~V 208 (749)
++..+.+|++|-.+....|..|++.|.+
T Consensus 34 ~iavleaelr~~metik~lekf~efdrl 61 (61)
T PHA02629 34 IIAVLEAELRKSMETIKALEKFMEFDRL 61 (61)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccC
Confidence 4567788999999999999999998863
No 176
>PF09921 DUF2153: Uncharacterized protein conserved in archaea (DUF2153); InterPro: IPR014450 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=26.83 E-value=1e+02 Score=30.40 Aligned_cols=41 Identities=24% Similarity=0.251 Sum_probs=26.4
Q ss_pred chHHHHHHHHhhhcCCCChhhhh----hhHHHHHHhhhhHHHHHHHhhcC
Q 004493 161 SFEDRIEALLRKISTEVDPQRIA----GMQAEVKRYQDDKNILKQYAEND 206 (749)
Q Consensus 161 sfe~ri~~l~~~~~~~~dP~r~~----~~~~evkr~q~D~~lL~qy~~~d 206 (749)
-+.++|++...|+ .||.-++ .|+.||++. -+++|.+|++=|
T Consensus 41 hm~RTlKaFd~WL---qdP~ItshMPreML~dv~~~--~~~il~~llelD 85 (126)
T PF09921_consen 41 HMMRTLKAFDQWL---QDPMITSHMPREMLEDVWET--LREILEQLLELD 85 (126)
T ss_pred HHHHHHHHHHHHH---cCchhHhcCCHHHHHHHHHH--HHHHHHHHHHHh
Confidence 3678899999999 5565544 677777643 244555555433
No 177
>cd01773 Faf1_like1_UBX Faf1 ike-1 UBX domain. Faf1_like1 is a protein of unknown function with a domain architecture that includes the UAS (ubiquitin-associated) and UBX (ubiquitin-like) domains. This protein is related to other UBA/UBX-containing proteins like Faf1, p47, and SAKS1 and may serve as an adaptor molecule that shuttles proteins to the proteasome for degradation. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=26.54 E-value=2.6e+02 Score=25.49 Aligned_cols=77 Identities=17% Similarity=0.195 Sum_probs=50.2
Q ss_pred cccccceeeccccceeeeecCCCCCCceEEEeeCCChhhHHHHHhhhc--cccEEEEEEeCCcHHHHHHHHHhcCCCCCc
Q 004493 230 QALVRPLIRLQEKNIILTRINPQIRDTSVLVRLRPAWEDLRSYLTARG--RKRFEVYVCTMAERDYALEMWRLLDPESNL 307 (749)
Q Consensus 230 ~~v~RpvIRl~~~n~~ltRInP~~r~ts~~VKLRPgv~ELr~FL~a~~--sk~FELyVyTmGtR~YA~eI~rLLDPdg~L 307 (749)
+++++=.||+|....+-.|.+... -+.+|+.|+.... ...|+| -|+
T Consensus 3 ~~~t~i~vRlP~G~r~~rrF~~~~-----------~L~~v~~fv~~~g~~~~~f~L--~t~------------------- 50 (82)
T cd01773 3 GPKARLMLRYPDGKREQIALPEQA-----------KLLALVRHVQSKGYPNERFEL--LTN------------------- 50 (82)
T ss_pred CCeeEEEEECCCCCEEEEEeCCCC-----------cHHHHHHHHHhcCCCCCCEEE--ecC-------------------
Confidence 345666899999888887877655 3667777876221 122333 222
Q ss_pred ccccccCCcEEEccCCCccchhhhccCCCCCCcEEEEEcCC
Q 004493 308 INTKELLDRIVCVKSGSRKSLFNVFQDGTCHPKMALVIDDR 348 (749)
Q Consensus 308 Fg~~~l~~RIISresg~~KsL~~LFp~g~c~~~mvVIIDDR 348 (749)
|. .|+++-++-. ++|+.+- -.++.++||-||
T Consensus 51 FP-----Rr~~~~~d~~-~TL~e~G----L~P~~~LfVq~r 81 (82)
T cd01773 51 FP-----RRKLSHLDYD-ITLQEAG----LCPQETVFVQER 81 (82)
T ss_pred CC-----CcccCCcccC-CCHHHcC----CCCCcEEEEecC
Confidence 77 7787664444 5777643 357899999998
No 178
>PF09419 PGP_phosphatase: Mitochondrial PGP phosphatase; InterPro: IPR010021 This group of hypothetical proteins is a part of the IIIA subfamily of the haloacid dehalogenase (HAD) superfamily of hydrolases. All characterised members of this subfamily and most characterised members of the HAD superfamily are phosphatases. HAD superfamily phosphatases contain active site residues in several conserved catalytic motifs [], all of which are found conserved here. This family consists of sequences from fungi, plants, cyanobacteria, Gram-positive bacteria and Deinococcus. There is presently no characterisation of any sequence in this family.
Probab=25.86 E-value=51 Score=33.29 Aligned_cols=21 Identities=24% Similarity=0.256 Sum_probs=15.2
Q ss_pred hcceeeEEEeCcchhhhhccc
Q 004493 139 NLRCLGIVFDLDETLIVANTM 159 (749)
Q Consensus 139 ~~R~L~lVfDLDeTLI~A~T~ 159 (749)
+.--=+||||+|.||..-+..
T Consensus 38 ~~Gik~li~DkDNTL~~~~~~ 58 (168)
T PF09419_consen 38 KKGIKALIFDKDNTLTPPYED 58 (168)
T ss_pred hcCceEEEEcCCCCCCCCCcC
Confidence 333468999999999865533
No 179
>PRK09484 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase; Provisional
Probab=25.17 E-value=32 Score=33.91 Aligned_cols=11 Identities=18% Similarity=0.344 Sum_probs=0.0
Q ss_pred eEEEeCcchhh
Q 004493 144 GIVFDLDETLI 154 (749)
Q Consensus 144 ~lVfDLDeTLI 154 (749)
.||||+|+||+
T Consensus 23 li~~D~Dgtl~ 33 (183)
T PRK09484 23 LLICDVDGVFS 33 (183)
T ss_pred EEEEcCCeeee
No 180
>COG3882 FkbH Predicted enzyme involved in methoxymalonyl-ACP biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=24.71 E-value=37 Score=39.99 Aligned_cols=23 Identities=30% Similarity=0.255 Sum_probs=18.1
Q ss_pred HHHhhcceeeEEEeCcchhhhhc
Q 004493 135 LTMLNLRCLGIVFDLDETLIVAN 157 (749)
Q Consensus 135 ~~lL~~R~L~lVfDLDeTLI~A~ 157 (749)
..|--.++=+||+|||+||..-.
T Consensus 215 ~A~~g~~kK~LVLDLDNTLWGGV 237 (574)
T COG3882 215 AAMSGKSKKALVLDLDNTLWGGV 237 (574)
T ss_pred HHhhCcccceEEEecCCcccccc
Confidence 45666677889999999998654
No 181
>TIGR01668 YqeG_hyp_ppase HAD superfamily (subfamily IIIA) phosphatase, TIGR01668. This family consists of sequences from fungi, plants, cyanobacteria, gram-positive bacteria and Deinococcus. There is presently no characterization of any sequence in this family.
Probab=23.51 E-value=65 Score=31.39 Aligned_cols=28 Identities=21% Similarity=0.379 Sum_probs=18.4
Q ss_pred hhcceeeEEEeCcchhhhhccccchHHH
Q 004493 138 LNLRCLGIVFDLDETLIVANTMRSFEDR 165 (749)
Q Consensus 138 L~~R~L~lVfDLDeTLI~A~T~~sfe~r 165 (749)
....-=++|+|+|+||+......-++.-
T Consensus 21 ~~~~v~~vv~D~Dgtl~~~~~~~~~pgv 48 (170)
T TIGR01668 21 KKVGIKGVVLDKDNTLVYPDHNEAYPAL 48 (170)
T ss_pred HHCCCCEEEEecCCccccCCCCCcChhH
Confidence 3344357889999999976654444433
No 182
>PLN02205 alpha,alpha-trehalose-phosphate synthase [UDP-forming]
Probab=23.38 E-value=91 Score=38.64 Aligned_cols=67 Identities=16% Similarity=0.206 Sum_probs=37.3
Q ss_pred cHHHHHHHHHhhhcccceEEecCCCceeEEEEeeecCCCCCccEEEEEeeccchhHHHHHHhhcceeeEEEeCcchhhh
Q 004493 77 NIQLHLLHSSCIRENKTAVMPLGLTEELHLVAMYSRNNEKQYPCFWAFSVGSGLYNSCLTMLNLRCLGIVFDLDETLIV 155 (749)
Q Consensus 77 ~~~l~~lH~~c~~enKtaVv~~~~~~ElhLvam~s~~~~~~~p~Fw~f~v~~g~y~~~~~lL~~R~L~lVfDLDeTLI~ 155 (749)
..-|..|+..|....|.-...+|-|--.-+||+.+.-. .+..-.........++..|++|+||||+.
T Consensus 543 ~~fl~~l~~~~~~~~~~~~~~~g~g~~~~~~~~~~~~~------------~l~~~~i~~~y~~~~~rlI~LDyDGTLlp 609 (854)
T PLN02205 543 RSFLQDLERTCRDHSRRRCWGIGFGLSFRVVALDPNFR------------KLSMEHIVSAYKRTTTRAILLDYDGTLMP 609 (854)
T ss_pred HHHHHHHHHHHHHHhhhhhccccccccccccccccccc------------ccCHHHHHHHHHhhcCeEEEEecCCcccC
Confidence 44577788887655433334444444455566544311 11122222333455667899999999993
No 183
>TIGR01511 ATPase-IB1_Cu copper-(or silver)-translocating P-type ATPase. One member from Halobacterium is annotated as "molybdenum-binding protein" although no evidence can be found for this classification.
Probab=23.16 E-value=78 Score=36.89 Aligned_cols=42 Identities=24% Similarity=0.198 Sum_probs=35.5
Q ss_pred EEeeCCChhhHHHHHhhhccccEEEEEEeCCcHHHHHHHHHhcCC
Q 004493 259 LVRLRPAWEDLRSYLTARGRKRFEVYVCTMAERDYALEMWRLLDP 303 (749)
Q Consensus 259 ~VKLRPgv~ELr~FL~a~~sk~FELyVyTmGtR~YA~eI~rLLDP 303 (749)
..++||++.++.+.|+ +.-++++|.|...+.+|+.+++.+.=
T Consensus 403 ~d~l~~~a~e~i~~Lk---~~Gi~v~ilSgd~~~~a~~ia~~lgi 444 (562)
T TIGR01511 403 EDQLRPEAKEVIQALK---RRGIEPVMLTGDNRKTAKAVAKELGI 444 (562)
T ss_pred cccccHHHHHHHHHHH---HcCCeEEEEcCCCHHHHHHHHHHcCC
Confidence 4568999999888886 45689999999999999999998644
No 184
>TIGR01460 HAD-SF-IIA Haloacid Dehalogenase Superfamily Class (subfamily) IIA. Many of the genes in this subfamily have been annotated as "pNPPase" "4-nitrophenyl phosphatase" or "NPPase". These all refer to the same activity versus a common lab test compound used to determine phosphatase activity. There is no evidence that this activity is physiologically relevant.
Probab=22.88 E-value=39 Score=34.58 Aligned_cols=23 Identities=30% Similarity=0.491 Sum_probs=16.1
Q ss_pred EEEeCcchhhhhccccchHHHHHHH
Q 004493 145 IVFDLDETLIVANTMRSFEDRIEAL 169 (749)
Q Consensus 145 lVfDLDeTLI~A~T~~sfe~ri~~l 169 (749)
++||+||||+..++. +..-++++
T Consensus 1 ~lfD~DGvL~~~~~~--~~~a~e~i 23 (236)
T TIGR01460 1 FLFDIDGVLWLGHKP--IPGAAEAL 23 (236)
T ss_pred CEEeCcCccCcCCcc--CcCHHHHH
Confidence 589999999987654 44444443
No 185
>PRK08942 D,D-heptose 1,7-bisphosphate phosphatase; Validated
Probab=22.29 E-value=44 Score=32.34 Aligned_cols=13 Identities=31% Similarity=0.414 Sum_probs=10.4
Q ss_pred eEEEeCcchhhhh
Q 004493 144 GIVFDLDETLIVA 156 (749)
Q Consensus 144 ~lVfDLDeTLI~A 156 (749)
++.||+|+||+..
T Consensus 5 ~~~~d~~~t~~~~ 17 (181)
T PRK08942 5 AIFLDRDGVINVD 17 (181)
T ss_pred EEEEECCCCcccC
Confidence 5889999997543
No 186
>PLN02645 phosphoglycolate phosphatase
Probab=21.72 E-value=48 Score=35.40 Aligned_cols=35 Identities=17% Similarity=0.162 Sum_probs=23.4
Q ss_pred HHHHhhcceeeEEEeCcchhhhhccccchHHHHHHHHh
Q 004493 134 CLTMLNLRCLGIVFDLDETLIVANTMRSFEDRIEALLR 171 (749)
Q Consensus 134 ~~~lL~~R~L~lVfDLDeTLI~A~T~~sfe~ri~~l~~ 171 (749)
...|++.-+ +++||+||||+..+. -|+.-.++|+.
T Consensus 21 ~~~~~~~~~-~~~~D~DGtl~~~~~--~~~ga~e~l~~ 55 (311)
T PLN02645 21 ADELIDSVE-TFIFDCDGVIWKGDK--LIEGVPETLDM 55 (311)
T ss_pred HHHHHHhCC-EEEEeCcCCeEeCCc--cCcCHHHHHHH
Confidence 344554333 789999999998663 46666666643
No 187
>TIGR01670 YrbI-phosphatas 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family. The Methanosarcina sequence is distinctive in that it is linked to an N-terminal cytidylyltransferase domain (pfam02348) and is annotated as acylneuraminate cytidylyltransferase. This may give some clue as the function of these phosphatases. Several eukaryotic sequences scoring between trusted and noise are also closely related to this function such as the CMP-N-acetylneuraminic acid synthetase from mouse, but in these cases the phosphatase domain is clearly inactive as many of the active site residues are not conserved.
Probab=21.45 E-value=1.5e+02 Score=28.41 Aligned_cols=11 Identities=27% Similarity=0.525 Sum_probs=9.6
Q ss_pred eEEEeCcchhh
Q 004493 144 GIVFDLDETLI 154 (749)
Q Consensus 144 ~lVfDLDeTLI 154 (749)
.++||+|+||+
T Consensus 3 ~~~~D~Dgtl~ 13 (154)
T TIGR01670 3 LLILDVDGVLT 13 (154)
T ss_pred EEEEeCceeEE
Confidence 47889999999
No 188
>PRK12704 phosphodiesterase; Provisional
Probab=21.42 E-value=49 Score=38.63 Aligned_cols=47 Identities=23% Similarity=0.444 Sum_probs=36.3
Q ss_pred ccccccCCcEEEccCCCccchhhhccCCCCCCcEEEEEcCCcccCCCCCCCCeEEecccCCCC
Q 004493 308 INTKELLDRIVCVKSGSRKSLFNVFQDGTCHPKMALVIDDRLKVWDDKDQPRVHVVPAFAPYY 370 (749)
Q Consensus 308 Fg~~~l~~RIISresg~~KsL~~LFp~g~c~~~mvVIIDDR~dVW~~~~qn~I~vV~~Y~pf~ 370 (749)
++..+..+|||.|+.-+.+.|..+.+ .=+||||+ +.++++.-|.|..
T Consensus 216 lp~d~mkgriigreGrnir~~e~~tg-------vd~iiddt---------p~~v~ls~~~~~r 262 (520)
T PRK12704 216 LPNDEMKGRIIGREGRNIRALETLTG-------VDLIIDDT---------PEAVILSGFDPIR 262 (520)
T ss_pred cCCchhhcceeCCCcchHHHHHHHhC-------CeEEEcCC---------CCeEEEecCChhh
Confidence 44456667999998889999999886 45999998 3456788887765
No 189
>smart00495 ChtBD3 Chitin-binding domain type 3.
Probab=20.68 E-value=56 Score=25.04 Aligned_cols=18 Identities=44% Similarity=0.615 Sum_probs=15.6
Q ss_pred HHhhcCccccCCeEEEee
Q 004493 201 QYAENDQVNENGKVIKVQ 218 (749)
Q Consensus 201 qy~~~d~V~~nG~~~k~q 218 (749)
-|..+|.|++||+.|+++
T Consensus 9 ~Y~~Gd~V~~~g~~y~A~ 26 (41)
T smart00495 9 VYTAGDVVSYNGKVYKAK 26 (41)
T ss_pred cCcCCCEEEECCeEEEEe
Confidence 477899999999999884
Done!