Query 004493
Match_columns 749
No_of_seqs 181 out of 271
Neff 3.4
Searched_HMMs 29240
Date Tue Mar 26 17:39:50 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/004493.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_1802-1806//hhsearch_pdb/004493hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ef1_A RNA polymerase II subun 1.0 1 1 257.8 15.6 164 132-371 16-182 (442)
2 3ef0_A RNA polymerase II subun 1.0 1 1 250.0 17.5 228 132-447 8-290 (372)
3 3qle_A TIM50P; chaperone, mito 1.0 1 1 160.5 8.6 129 257-396 55-184 (204)
4 3shq_A UBLCP1; phosphatase, hy 1.0 1 1 144.6 4.5 137 259-402 162-312 (320)
5 2hhl_A CTD small phosphatase-l 1.0 1 1 140.2 6.8 115 256-394 63-183 (195)
6 2ght_A Carboxy-terminal domain 1.0 1 1 139.9 9.7 115 256-394 50-170 (181)
7 3kbb_A Phosphorylated carbohyd 1.0 1 1 47.6 6.7 78 259-350 82-168 (216)
8 3m9l_A Hydrolase, haloacid deh 1.0 1 1 45.4 9.2 82 259-350 68-155 (205)
9 3m1y_A Phosphoserine phosphata 1.0 1 1 42.5 4.3 81 260-350 74-169 (217)
10 4eze_A Haloacid dehalogenase-l 1.0 1 1 42.3 5.3 81 260-350 178-273 (317)
No 1
>3ef1_A RNA polymerase II subunit A C-terminal domain phosphatase; CTD, FCPH, BRCT, hydrolase, BEF3, acylphosphate analog, cobalt, magnesium; HET: BFD; 2.15A {Schizosaccharomyces pombe}
Probab=1.00 E-value=1 Score=257.77 Aligned_cols=164 Identities=23% Similarity=0.425 Sum_probs=134.7
Q ss_pred HHHHHHHHCCEEEEEEECCCHHHHHCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
Q ss_conf 77999862120169973762033350430048999999864217799134664699998734149999987403812028
Q 004493 132 NSCLTMLNLRCLGIVFDLDETLIVANTMRSFEDRIEALLRKISTEVDPQRIAGMQAEVKRYQDDKNILKQYAENDQVNEN 211 (749)
Q Consensus 132 ~~~~~lL~~R~L~lV~DLDeTLI~A~t~~sfe~ri~~l~~~~~~~~dP~r~~~~~~evkr~q~D~~lL~qy~~~d~V~~n 211 (749)
+...+||..|||.||+||||||||+.. ++. ++.|+.++.+|+.- ..+++++|+.
T Consensus 16 ~~~~rll~~~Kl~LVLDLDeTLiHs~~----~~~---~~~~~~~~~~~~~~--~~~dv~~F~l----------------- 69 (442)
T 3ef1_A 16 ENVKRLRQEKRLSLIVXLDQTIIHATV----DPT---VGEWMSDPGNVNYD--VLRDVRSFNL----------------- 69 (442)
T ss_dssp HHHHHHHHTTCEEEEECCBTTTEEEEC----CTH---HHHHHTCTTSTTTG--GGTTCEEEEE-----------------
T ss_pred HHHHHHHHCCCEEEEEEECCCEECCCC----CCC---CCHHCCCCCCCCHH--HHCCCCCEEE-----------------
T ss_conf 899999866970899961561221234----566---31110377776613--3211011361-----------------
Q ss_pred CEEEEEECCCCCCCCCCCCCCCCCEEECCCCCEEEEECCCCCCCCEEEEEECCCHHHHHHHHHHHCCCCEEEEEEECCCH
Q ss_conf 93987302002488775333223526315664255311789888348996087706678887462026579999967827
Q 004493 212 GKVIKVQSEVVPALSDSHQALVRPLIRLQEKNIILTRINPQIRDTSVLVRLRPAWEDLRSYLTARGRKRFEVYVCTMAER 291 (749)
Q Consensus 212 G~~~k~q~E~~p~l~Dg~~~i~RpvIRl~~~n~~ltRInP~~r~ts~~VKLRPgv~ELr~FL~ak~sk~FELyVyTmGtR 291 (749)
...+....++|||++|||+++ ||+ +++++|||+|||+|.+
T Consensus 70 ------------------------------------~~~~~~~~~~~~V~~RPgl~e---FL~-~ls~~yEivIfTas~~ 109 (442)
T 3ef1_A 70 ------------------------------------QEGPSGYTSCYYIKFRPGLAQ---FLQ-KISELYELHIYTMGTK 109 (442)
T ss_dssp ------------------------------------EETTTTEEEEEEEEECTTHHH---HHH-HHTTTEEEEEECSSCH
T ss_pred ------------------------------------EECCCCCEEEEEEEECCCHHH---HHH-HHHCCCEEEEECCCCH
T ss_conf ------------------------------------023688526999995878999---999-8727867999848978
Q ss_pred HHHHHHHHHCCCCCCCCCCCCCCCCEEECCCC---CCCCHHHHCCCCCCCCCEEEEECCCCCCCCCCCCCCEEEECCCCC
Q ss_conf 89999998309899853555667907870589---743433331689989967999929832599999999388225578
Q 004493 292 DYALEMWRLLDPESNLINTKELLDRIVCVKSG---SRKSLFNVFQDGTCHPKMALVIDDRLKVWDDKDQPRVHVVPAFAP 368 (749)
Q Consensus 292 ~YA~eIlrLLDPdg~LFg~~~l~~RIISresg---~~KsL~~LFp~g~~~~~mvVIIDDR~dVW~~~~qn~I~vV~~Y~p 368 (749)
.||..|++.|||++.||. +|+++|+++ ..|+|.++|+ ++.+++|||||++++|..+ + |.+.|.+|.|
T Consensus 110 ~YA~~Vl~~LDp~~~~f~-----~Rl~sRd~cg~~~~KdL~~ll~---rdl~~vvIIDd~p~~~~~~-p-N~I~I~~~~f 179 (442)
T 3ef1_A 110 AYAKEVAKIIDPTGKLFQ-----DRVLSRDDSGSLAQKSLRRLFP---CDTSMVVVIDDRGDVWDWN-P-NLIKVVPYEF 179 (442)
T ss_dssp HHHHHHHHHHCTTSTTTT-----TCEECTTTSSCSSCCCGGGTCS---SCCTTEEEEESCSGGGTTC-T-TEEECCCCCC
T ss_pred HHHHHHHHHHCCCCCCCC-----CEEEEECCCCCCEEEEHHHHCC---CCCCEEEEEECCHHHHCCC-C-CEEECCCCCC
T ss_conf 999999999644776003-----1699732779860500688649---9944089998988882889-9-7777478525
Q ss_pred CCC
Q ss_conf 888
Q 004493 369 YYA 371 (749)
Q Consensus 369 f~~ 371 (749)
|..
T Consensus 180 F~~ 182 (442)
T 3ef1_A 180 FVG 182 (442)
T ss_dssp STT
T ss_pred CCC
T ss_conf 677
No 2
>3ef0_A RNA polymerase II subunit A C-terminal domain phosphatase; CTD, FCPH, BRCT, hydrolase, ALF4, transition state analog, cobalt, magnesium; 2.10A {Schizosaccharomyces pombe}
Probab=1.00 E-value=1 Score=250.05 Aligned_cols=228 Identities=20% Similarity=0.325 Sum_probs=176.1
Q ss_pred HHHHHHHHCCEEEEEEECCCHHHHHCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
Q ss_conf 77999862120169973762033350430048999999864217799134664699998734149999987403812028
Q 004493 132 NSCLTMLNLRCLGIVFDLDETLIVANTMRSFEDRIEALLRKISTEVDPQRIAGMQAEVKRYQDDKNILKQYAENDQVNEN 211 (749)
Q Consensus 132 ~~~~~lL~~R~L~lV~DLDeTLI~A~t~~sfe~ri~~l~~~~~~~~dP~r~~~~~~evkr~q~D~~lL~qy~~~d~V~~n 211 (749)
++..|||..+|++||||||||||++.... .+ ..|.+...+|+. ...++++.|+.+
T Consensus 8 ~~~~rl~~~~k~~LVlDLD~TLvhS~~~~----~~---~~w~~~~~~~~~--~~~~dv~~f~~~---------------- 62 (372)
T 3ef0_A 8 ENVKRLRQEKRLSLIVDLDQTIIHATVDP----TV---GEWMSDPGNVNY--DVLRDVRSFNLQ---------------- 62 (372)
T ss_dssp HHHHHHHHHTCEEEEECCBTTTEEEECCT----HH---HHHHTCTTSTTT--GGGTTCEEEEEE----------------
T ss_pred HHHHHHHHCCCCEEEECCCCCCCCCCCCC----CC---CHHHCCCCCCCH--HHHHHHHCEEEE----------------
T ss_conf 89999986799789986998755136767----54---211126778865--665343140555----------------
Q ss_pred CEEEEEECCCCCCCCCCCCCCCCCEEECCCCCEEEEECCCCCCCCEEEEEECCCHHHHHHHHHHHCCCCEEEEEEECCCH
Q ss_conf 93987302002488775333223526315664255311789888348996087706678887462026579999967827
Q 004493 212 GKVIKVQSEVVPALSDSHQALVRPLIRLQEKNIILTRINPQIRDTSVLVRLRPAWEDLRSYLTARGRKRFEVYVCTMAER 291 (749)
Q Consensus 212 G~~~k~q~E~~p~l~Dg~~~i~RpvIRl~~~n~~ltRInP~~r~ts~~VKLRPgv~ELr~FL~ak~sk~FELyVyTmGtR 291 (749)
..+....++|||++|||+++ ||+ +++++|||+|||++.+
T Consensus 63 -------------------------------------~~~~~~~~~~~v~~RPg~~e---FL~-~l~~~yeivI~Tas~~ 101 (372)
T 3ef0_A 63 -------------------------------------EGPSGYTSCYYIKFRPGLAQ---FLQ-KISELYELHIYTMGTK 101 (372)
T ss_dssp -------------------------------------ETTTTEEEEEEEEECTTHHH---HHH-HHHTTEEEEEECSSCH
T ss_pred -------------------------------------ECCCCCEEEEEEEECCCHHH---HHH-HHHCCCEEEEEECCCH
T ss_conf -------------------------------------51477447999997868999---999-8755867999908857
Q ss_pred HHHHHHHHHCCCCCCCCCCCCCCCCEEECCCC---CCCCHHHHCCCCCCCCCEEEEECCCCCCCCCCCCCCEEEECCCCC
Q ss_conf 89999998309899853555667907870589---743433331689989967999929832599999999388225578
Q 004493 292 DYALEMWRLLDPESNLINTKELLDRIVCVKSG---SRKSLFNVFQDGTCHPKMALVIDDRLKVWDDKDQPRVHVVPAFAP 368 (749)
Q Consensus 292 ~YA~eIlrLLDPdg~LFg~~~l~~RIISresg---~~KsL~~LFp~g~~~~~mvVIIDDR~dVW~~~~qn~I~vV~~Y~p 368 (749)
.||..|++.|||.++||. +|+++|+++ +.|+|.++|+ ++++++|||||++++|..+ + |.+.|.+|.|
T Consensus 102 ~yA~~vl~~LDp~~~~f~-----~ri~sr~~~g~~~~KdL~~L~~---~dl~~viiiDd~~~~~~~~-p-N~I~i~~~~~ 171 (372)
T 3ef0_A 102 AYAKEVAKIIDPTGKLFQ-----DRVLSRDDSGSLAQKSLRRLFP---CDTSMVVVIDDRGDVWDWN-P-NLIKVVPYEF 171 (372)
T ss_dssp HHHHHHHHHHCTTSCSSS-----SCEECTTTSSCSSCCCGGGTCS---SCCTTEEEEESCSGGGTTC-T-TEEECCCCCC
T ss_pred HHHHHHHHHHCCCCCEEE-----EEEEEECCCCCCCEECHHHHCC---CCCCEEEEEECCHHHCCCC-C-CEEEECCCCC
T ss_conf 889999998564775430-----0799853779701203789619---9974299995887872789-8-6766478634
Q ss_pred CCCC---------HH----------------------------------H---------HCCCCCHHHHHHHHHHHCCCC
Q ss_conf 8882---------45----------------------------------5---------413573389999988410231
Q 004493 369 YYAP---------QA----------------------------------E---------ANNAIPVLCVARNIACNVRGG 396 (749)
Q Consensus 369 f~~~---------q~----------------------------------E---------~~~~~p~L~~al~vL~~Vh~~ 396 (749)
|... .. | ....+..|..+.++|.+||..
T Consensus 172 f~~~~d~n~~~lp~~~~~~~~~~~~~~~~~~~q~~~~p~~~~q~~l~~~e~~~~~~~~~~~d~D~~L~~~~~~L~~iH~~ 251 (372)
T 3ef0_A 172 FVGIGDINSNFLSGNREALEEQNKERVTALELQKSERPLAKQQNALLEDEGKPTPSHTLLHNRDHELERLEKVLKDIHAV 251 (372)
T ss_dssp STTCCCTTC--------CCGGGGHHHHHHHHHHHHHCHHHHHHHHHHHSCCSCSGGGCSCCCCCCHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCHHHCCCCCCHHHHHHHHHHHHHHHHH
T ss_conf 58767544433566413577766665444554301361567777641000133301034568769999999999999999
Q ss_pred CHHCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCC
Q ss_conf 011001333210232111576789999988454021035433458988988
Q 004493 397 FFKEFDEGLLQRIPEISYEDDVKDIPSPPDVSNYLVSEDDAATANGIKDPL 447 (749)
Q Consensus 397 FFk~fDe~l~~ri~ev~~e~~~~~~~~~pDV~n~l~~e~~~~~~~g~~~~~ 447 (749)
||+++|...... ... ..|||+.++-.-... ++.||.+..
T Consensus 252 Ff~~~~~~~~~~--------~~~---~~~dv~~ii~~lk~~-~L~G~~ivf 290 (372)
T 3ef0_A 252 YYEEENDISSRS--------GNH---KHANVGLIIPKMKQK-VLKGCRLLF 290 (372)
T ss_dssp HHHHHHHHHHHT--------TTS---SCCCHHHHHHHHHTT-TSTTCEEEE
T ss_pred HHHHHHHHCCCC--------CCC---CCCCHHHHHHHHHHH-HCCCCEEEE
T ss_conf 998775402344--------556---666088889998763-128968999
No 3
>3qle_A TIM50P; chaperone, mitochondrion, preprotein translocation; HET: 1PE; 1.83A {Saccharomyces cerevisiae EC1118}
Probab=1.00 E-value=1 Score=160.48 Aligned_cols=129 Identities=14% Similarity=0.123 Sum_probs=90.3
Q ss_pred EEEEEECCCHHHHHHHHHHHCCCCEEEEEEECCCHHHHHHHHHHCCCCCCCCCCCCCCCCEEECCCCCCCCHHHHCCCCC
Q ss_conf 48996087706678887462026579999967827899999983098998535556679078705897434333316899
Q 004493 257 SVLVRLRPAWEDLRSYLTARGRKRFEVYVCTMAERDYALEMWRLLDPESNLINTKELLDRIVCVKSGSRKSLFNVFQDGT 336 (749)
Q Consensus 257 s~~VKLRPgv~ELr~FL~ak~sk~FELyVyTmGtR~YA~eIlrLLDPdg~LFg~~~l~~RIISresg~~KsL~~LFp~g~ 336 (749)
.+++++|||+++ ||+ ++++.|||+|||++.+.||..|++.|||.+.+|..+..++.+...++...|+|..+.
T Consensus 55 ~~~v~~RPgl~e---FL~-~l~~~yeivI~Tas~~~ya~~vl~~LDp~~~~f~~rl~R~~c~~~~g~y~KdL~~Lg---- 126 (204)
T 3qle_A 55 GWRTAKRPGADY---FLG-YLSQYYEIVLFSSNYMMYSDKIAEKLDPIHAFVSYNLFKEHCVYKDGVHIKDLSKLN---- 126 (204)
T ss_dssp EEEEEECTTHHH---HHH-HHTTTEEEEEECSSCHHHHHHHHHHTSTTCSSEEEEECGGGSEEETTEEECCGGGSC----
T ss_pred CEEEEECCCHHH---HHH-HHHHCCEEEEECCCCHHHHHHHHHHHCCCCCEEEEEEEECCEEEECCEEEECHHHHC----
T ss_conf 646886779999---999-998388799992896799999999968987758899996354677881651088739----
Q ss_pred CCCCEEEEECCCCCCCCCCCCCCEEEECCCCCCCCCHHHHCCCCCHHHHHHH-HHHHCCCC
Q ss_conf 8996799992983259999999938822557888824554135733899999-88410231
Q 004493 337 CHPKMALVIDDRLKVWDDKDQPRVHVVPAFAPYYAPQAEANNAIPVLCVARN-IACNVRGG 396 (749)
Q Consensus 337 ~~~~mvVIIDDR~dVW~~~~qn~I~vV~~Y~pf~~~q~E~~~~~p~L~~al~-vL~~Vh~~ 396 (749)
.+++.+|||||++.+|..+.+|.| .|++|. ..+..|.....|.|..... -..+||..
T Consensus 127 rdl~~vIiIDDsp~~~~~~p~N~I-~I~~~~--~~~D~eL~~L~~~L~~L~~~~~~DVR~~ 184 (204)
T 3qle_A 127 RDLSKVIIIDTDPNSYKLQPENAI-PMEPWN--GEADDKLVRLIPFLEYLATQQTKDVRPI 184 (204)
T ss_dssp SCGGGEEEEESCTTTTTTCGGGEE-ECCCCC--SSCCCHHHHHHHHHHHHHHTCCSCSHHH
T ss_pred CCHHHEEEEECCHHHHHHCCCCCE-EEEEEC--CCCCHHHHHHHHHHHHHHHCCHHHHHHH
T ss_conf 996789999788898740965735-740278--9997649999999999864573789999
No 4
>3shq_A UBLCP1; phosphatase, hydrolase; 1.96A {Drosophila melanogaster}
Probab=1.00 E-value=1 Score=144.59 Aligned_cols=137 Identities=15% Similarity=0.206 Sum_probs=93.2
Q ss_pred EEEECCCHHHHHHHHHHHCCCCEEEEEEECCCHHHHHHHHHHCCCCCCC-CCCCCCCCCE--EEC---CCC--CCCCHHH
Q ss_conf 9960877066788874620265799999678278999999830989985-3555667907--870---589--7434333
Q 004493 259 LVRLRPAWEDLRSYLTARGRKRFEVYVCTMAERDYALEMWRLLDPESNL-INTKELLDRI--VCV---KSG--SRKSLFN 330 (749)
Q Consensus 259 ~VKLRPgv~ELr~FL~ak~sk~FELyVyTmGtR~YA~eIlrLLDPdg~L-Fg~~~l~~RI--ISr---esg--~~KsL~~ 330 (749)
++.+|||+++ ||+ .++++||++|||++.+.||..|++.|||.+.+ |..+.++++. ++. +.| ..|+|..
T Consensus 162 ~~~~RP~l~e---FL~-~l~~~yeivIfTas~~~ya~~vld~Ld~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~vKdLs~ 237 (320)
T 3shq_A 162 TELMRPYLHE---FLT-SAYEDYDIVIWSATSMRWIEEKMRLLGVASNDNYKVMFYLDSTAMISVHVPERGVVDVKPLGV 237 (320)
T ss_dssp HHHBCTTHHH---HHH-HHHHHEEEEEECSSCHHHHHHHHHHTTCTTCSSCCCCEEECGGGCEEEEETTTEEEEECCHHH
T ss_pred CEEECCCHHH---HHH-HHHHCCEEEEECCCCHHHHHHHHHHHCCCCCCCEEEEEEECCCCCCCCCCCCCCCEEEEEHHH
T ss_conf 2575889999---999-998577799982885899999999868777755659999827700045435779778878288
Q ss_pred H---CCCCCCCCCEEEEECCCCCCCCCCCCCCEEEECCCCCCC---CCHHHHCCCCCHHHHHHHHHHHCCCCCHHCHH
Q ss_conf 3---168998996799992983259999999938822557888---82455413573389999988410231011001
Q 004493 331 V---FQDGTCHPKMALVIDDRLKVWDDKDQPRVHVVPAFAPYY---APQAEANNAIPVLCVARNIACNVRGGFFKEFD 402 (749)
Q Consensus 331 L---Fp~g~~~~~mvVIIDDR~dVW~~~~qn~I~vV~~Y~pf~---~~q~E~~~~~p~L~~al~vL~~Vh~~FFk~fD 402 (749)
+ ||+ .+++.+|||||++..|..+.+|.| .|++|..-. ....|.....|.|..+..-..+||..-.+.|.
T Consensus 238 Lw~~~p~--rdl~~tIiIDdsp~~~~~~p~NgI-~I~~~~~~~~~~~~D~eL~~L~~~L~~L~~~~~DVr~~~~~~w~ 312 (320)
T 3shq_A 238 IWALYKQ--YNSSNTIMFDDIRRNFLMNPKSGL-KIRPFRQAHLNRGTDTELLKLSDYLRKIAHHCPDFNSLNHRKWE 312 (320)
T ss_dssp HHHHCTT--CCGGGEEEEESCGGGGTTSGGGEE-ECCCCCCHHHHTTTCCHHHHHHHHHHHHHHHCSCGGGCCGGGGG
T ss_pred HHCCCCC--CCHHHEEEEECCHHHHCCCCCCEE-EECEECCCCCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHH
T ss_conf 5411578--984678999688677462867667-83748178778986687999999999985457550488998778
No 5
>2hhl_A CTD small phosphatase-like protein; CTD phosphatase, keggins anion, structural genomics, PSI, protein structure initiative; HET: KEG; 2.10A {Homo sapiens}
Probab=1.00 E-value=1 Score=140.20 Aligned_cols=115 Identities=18% Similarity=0.125 Sum_probs=86.6
Q ss_pred CEEEEEECCCHHHHHHHHHHHCCCCEEEEEEECCCHHHHHHHHHHCCCCCCCCCCCCCCCCEEECCC------CCCCCHH
Q ss_conf 3489960877066788874620265799999678278999999830989985355566790787058------9743433
Q 004493 256 TSVLVRLRPAWEDLRSYLTARGRKRFEVYVCTMAERDYALEMWRLLDPESNLINTKELLDRIVCVKS------GSRKSLF 329 (749)
Q Consensus 256 ts~~VKLRPgv~ELr~FL~ak~sk~FELyVyTmGtR~YA~eIlrLLDPdg~LFg~~~l~~RIISres------g~~KsL~ 329 (749)
..+++++|||+.+ ||+ +++++||+.|||++.+.||..+++.|||.+ +|. . ++++++ ...|+|+
T Consensus 63 ~~~~v~~RPgv~e---fL~-~l~~~~~i~I~Tss~~~~a~~vl~~ld~~~-~f~-----~-~l~rd~~~~~k~~~lK~L~ 131 (195)
T 2hhl_A 63 HQVYVLKRPHVDE---FLQ-RMGQLFECVLFTASLAKYADPVADLLDRWG-VFR-----A-RLFRESCVFHRGNYVKDLS 131 (195)
T ss_dssp EEEEEEECTTHHH---HHH-HHHHHSEEEEECSSCHHHHHHHHHHHCCSS-CEE-----E-EECGGGCEEETTEEECCGG
T ss_pred EEEEEEECCCHHH---HHH-HHHCCCEEEEECCCCHHHHHHHHHHHCCCC-CEE-----E-EEECCCCEECCCCEEEEHH
T ss_conf 5688876868999---999-997298499991897899999999759715-489-----9-9975465515994553486
Q ss_pred HHCCCCCCCCCEEEEECCCCCCCCCCCCCCEEEECCCCCCCCCHHHHCCCCCHHHHHHHHHHHCC
Q ss_conf 33168998996799992983259999999938822557888824554135733899999884102
Q 004493 330 NVFQDGTCHPKMALVIDDRLKVWDDKDQPRVHVVPAFAPYYAPQAEANNAIPVLCVARNIACNVR 394 (749)
Q Consensus 330 ~LFp~g~~~~~mvVIIDDR~dVW~~~~qn~I~vV~~Y~pf~~~q~E~~~~~p~L~~al~vL~~Vh 394 (749)
.+. .+++.+|||||+...|..+..|.|. |.+|.. .+. +-.|..++.+|..++
T Consensus 132 ~Lg----~~~~~~vivDDs~~~~~~~~~ngi~-i~~~~~--~~~------D~eL~~L~~~L~~l~ 183 (195)
T 2hhl_A 132 RLG----RELSKVIIVDNSPASYIFHPENAVP-VQSWFD--DMT------DTELLDLIPFFEGLS 183 (195)
T ss_dssp GSS----SCGGGEEEEESCGGGGTTCGGGEEE-CCCCSS--CTT------CCHHHHHHHHHHHHH
T ss_pred HHC----CCHHHEEEEECCHHHHHHCCCCCCE-EEEECC--CCC------HHHHHHHHHHHHHHH
T ss_conf 729----9965799997988986437347127-724358--997------278999999999998
No 6
>2ght_A Carboxy-terminal domain RNA polymerase II polypeptide A small phosphatase 1; protein-peptide complex, HAD superfamily, hydrolase; HET: SEP; 1.80A {Homo sapiens} PDB: 2ghq_A* 3pgl_A* 1t9z_A* 1ta0_A* 3l0c_A 3l0y_A 3l0b_A* 2q5e_A
Probab=1.00 E-value=1 Score=139.87 Aligned_cols=115 Identities=19% Similarity=0.133 Sum_probs=88.2
Q ss_pred CEEEEEECCCHHHHHHHHHHHCCCCEEEEEEECCCHHHHHHHHHHCCCCCCCCCCCCCCCCEEECCC------CCCCCHH
Q ss_conf 3489960877066788874620265799999678278999999830989985355566790787058------9743433
Q 004493 256 TSVLVRLRPAWEDLRSYLTARGRKRFEVYVCTMAERDYALEMWRLLDPESNLINTKELLDRIVCVKS------GSRKSLF 329 (749)
Q Consensus 256 ts~~VKLRPgv~ELr~FL~ak~sk~FELyVyTmGtR~YA~eIlrLLDPdg~LFg~~~l~~RIISres------g~~KsL~ 329 (749)
..+++++|||+++ ||+ +++++||+.|||++.+.||..+++.|||.+ +|. . ++++++ ...|+|+
T Consensus 50 ~~~~v~~rPg~~e---fL~-~l~~~~~i~I~T~~~~~~a~~vl~~ld~~~-~f~-----~-~~~rd~~~~~k~~~~k~L~ 118 (181)
T 2ght_A 50 HQVYVLKRPHVDE---FLQ-RMGELFECVLFTASLAKYADPVADLLDKWG-AFR-----A-RLFRESCVFHRGNYVKDLS 118 (181)
T ss_dssp EEEEEEECTTHHH---HHH-HHHHHSEEEEECSSCHHHHHHHHHHHCTTC-CEE-----E-EECGGGSEEETTEEECCGG
T ss_pred EEEEEEECCCHHH---HHH-HHHHCCCEEEECCCCHHHHHHHHHHHCCCC-CEE-----E-EEECCCCEECCCCEECCHH
T ss_conf 7899976879999---999-998279999993998899999999879877-578-----9-9965572625996763477
Q ss_pred HHCCCCCCCCCEEEEECCCCCCCCCCCCCCEEEECCCCCCCCCHHHHCCCCCHHHHHHHHHHHCC
Q ss_conf 33168998996799992983259999999938822557888824554135733899999884102
Q 004493 330 NVFQDGTCHPKMALVIDDRLKVWDDKDQPRVHVVPAFAPYYAPQAEANNAIPVLCVARNIACNVR 394 (749)
Q Consensus 330 ~LFp~g~~~~~mvVIIDDR~dVW~~~~qn~I~vV~~Y~pf~~~q~E~~~~~p~L~~al~vL~~Vh 394 (749)
.+. .+++.+|||||+...|..+..|.|. +.+|.. .+ .+..|...+.+|..++
T Consensus 119 ~Lg----~~~~~~vivdDs~~~~~~~~~ngi~-i~~~~~--~~------~D~eL~~l~~~L~~l~ 170 (181)
T 2ght_A 119 RLG----RDLRRVLILDNSPASYVFHPDNAVP-VASWFD--NM------SDTELHDLLPFFEQLS 170 (181)
T ss_dssp GTC----SCGGGEEEECSCGGGGTTCTTSBCC-CCCCSS--CT------TCCHHHHHHHHHHHHT
T ss_pred HHC----CCCCEEEEEECCHHHHCCCCCCEEE-ECCCCC--CC------CHHHHHHHHHHHHHHC
T ss_conf 939----8825099995987773227277748-255568--99------8379999999999867
No 7
>3kbb_A Phosphorylated carbohydrates phosphatase TM_1254; hydrolase, arbohydrate metabolism, COBA magnesium, manganese, metal-binding, nickel; HET: MSE GOL; 1.74A {Thermotoga maritima MSB8}
Probab=1.00 E-value=1 Score=47.57 Aligned_cols=78 Identities=21% Similarity=0.301 Sum_probs=56.6
Q ss_pred EEEECCCHHHHHHHHHHHCCCCEEEEEEECCCHHHHHHHHHHCCCCCCCCCCCCCCCCEEECCC-CCC--------CCHH
Q ss_conf 9960877066788874620265799999678278999999830989985355566790787058-974--------3433
Q 004493 259 LVRLRPAWEDLRSYLTARGRKRFEVYVCTMAERDYALEMWRLLDPESNLINTKELLDRIVCVKS-GSR--------KSLF 329 (749)
Q Consensus 259 ~VKLRPgv~ELr~FL~ak~sk~FELyVyTmGtR~YA~eIlrLLDPdg~LFg~~~l~~RIISres-g~~--------KsL~ 329 (749)
..++.|++.+++.+|+ +..+.+.|.|++.+.++..+++.+ +...+|+.+++.++ +.. +.++
T Consensus 82 ~~~~~pg~~~~l~~L~---~~g~~~~i~tn~~~~~~~~~l~~~-------~l~~~fd~~~~~~~~~~~KP~p~~~~~a~~ 151 (216)
T 3kbb_A 82 LLKENPGVREALEFVK---SKRIKLALATSTPQREALERLRRL-------DLEKYFDVMVFGDQVKNGKPDPEIYLLVLE 151 (216)
T ss_dssp HCCBCTTHHHHHHHHH---HTTCEEEEECSSCHHHHHHHHHHT-------TCGGGCSEEECGGGSSSCTTSTHHHHHHHH
T ss_pred HCCCCCCHHHHHHHHH---HCCCCCCCCCCCCHHHHHHHHHHC-------CCCCCCCCCCCCCCCCCCCCCHHHHHHHHH
T ss_conf 5545803999999999---719973445688589999999862-------987554512321114877666899998887
Q ss_pred HHCCCCCCCCCEEEEECCCCC
Q ss_conf 331689989967999929832
Q 004493 330 NVFQDGTCHPKMALVIDDRLK 350 (749)
Q Consensus 330 ~LFp~g~~~~~mvVIIDDR~d 350 (749)
++ + +.++-+++|+|+..
T Consensus 152 ~l-g---~~p~e~l~VgDs~~ 168 (216)
T 3kbb_A 152 RL-N---VVPEKVVVFEDSKS 168 (216)
T ss_dssp HH-T---CCGGGEEEEECSHH
T ss_pred HH-C---CCCCCEEEEECCHH
T ss_conf 61-8---89653389806887
No 8
>3m9l_A Hydrolase, haloacid dehalogenase-like family; HAD family hydrolase, structural genomics, PSI, protein structure initiative; HET: MSE; 1.60A {Pseudomonas fluorescens} PDB: 2ybd_A* 3r09_A*
Probab=1.00 E-value=1 Score=45.36 Aligned_cols=82 Identities=13% Similarity=0.153 Sum_probs=56.3
Q ss_pred EEEECCCHHHHHHHHHHHCCCCEEEEEEECCCHHHHHHHHHHCCCCCCCCCCCCCC--CCEEECCCCCCC----CHHHHC
Q ss_conf 99608770667888746202657999996782789999998309899853555667--907870589743----433331
Q 004493 259 LVRLRPAWEDLRSYLTARGRKRFEVYVCTMAERDYALEMWRLLDPESNLINTKELL--DRIVCVKSGSRK----SLFNVF 332 (749)
Q Consensus 259 ~VKLRPgv~ELr~FL~ak~sk~FELyVyTmGtR~YA~eIlrLLDPdg~LFg~~~l~--~RIISresg~~K----sL~~LF 332 (749)
..++.|++.+++..|+ ..-+.++|+|.+.+.++..+++.+. ...++ +.+++.+.+..| .+..+.
T Consensus 68 ~~~~~~~~~~~l~~l~---~~g~~~~i~s~~~~~~~~~~l~~~~-------l~~~f~~~~i~~~~~~~~kp~~~~~~~~~ 137 (205)
T 3m9l_A 68 GSRPAPGAVELVRELA---GRGYRLGILTRNARELAHVTLEAIG-------LADCFAEADVLGRDEAPPKPHPGGLLKLA 137 (205)
T ss_dssp EEEECTTHHHHHHHHH---HTTCEEEEECSSCHHHHHHHHHHTT-------CGGGSCGGGEECTTTSCCTTSSHHHHHHH
T ss_pred CCCCCCCHHHHHHHHH---HCCCEEEEEECCCHHHHHHHHHHCC-------CHHHCCCCEEEECCCCCCCCCHHHHHHHH
T ss_conf 4887846999999999---6699299996985689999999837-------46436766277578999997979999999
Q ss_pred CCCCCCCCEEEEECCCCC
Q ss_conf 689989967999929832
Q 004493 333 QDGTCHPKMALVIDDRLK 350 (749)
Q Consensus 333 p~g~~~~~mvVIIDDR~d 350 (749)
......++-++.|+|+..
T Consensus 138 ~~~g~~~~~~i~iGD~~~ 155 (205)
T 3m9l_A 138 EAWDVSPSRMVMVGDYRF 155 (205)
T ss_dssp HHTTCCGGGEEEEESSHH
T ss_pred HHCCCCHHHEEEECCCHH
T ss_conf 984989899788788888
No 9
>3m1y_A Phosphoserine phosphatase (SERB); NYSGXRC, PSI II, phophoserine phosphatase, protein structure initiative, structural genomics; 2.40A {Helicobacter pylori} SCOP: c.108.1.0
Probab=1.00 E-value=1 Score=42.49 Aligned_cols=81 Identities=16% Similarity=0.090 Sum_probs=49.6
Q ss_pred EEECCCHHHHHHHHHHHCCCCEEEEEEECCCHHHHHHHHHHCCCCCCCCCCCCCCCCEEECCC-------------C--C
Q ss_conf 960877066788874620265799999678278999999830989985355566790787058-------------9--7
Q 004493 260 VRLRPAWEDLRSYLTARGRKRFEVYVCTMAERDYALEMWRLLDPESNLINTKELLDRIVCVKS-------------G--S 324 (749)
Q Consensus 260 VKLRPgv~ELr~FL~ak~sk~FELyVyTmGtR~YA~eIlrLLDPdg~LFg~~~l~~RIISres-------------g--~ 324 (749)
++++|++.+++..|+ ..-+.++|+|.+.+.++..+++.+.-. .+|. .+++.++ + .
T Consensus 74 ~~~~~~~~~~l~~l~---~~g~~~~i~S~~~~~~~~~~l~~~gl~-~~f~------~~~~~~~~~~~~~~~~~~~~~k~k 143 (217)
T 3m1y_A 74 LPLFEGALELVSALK---EKNYKVVCFSGGFDLATNHYRDLLHLD-AAFS------NTLIVENDALNGLVTGHMMFSHSK 143 (217)
T ss_dssp CCBCBTHHHHHHHHH---TTTEEEEEEEEEEHHHHHHHHHHHTCS-EEEE------EEEEEETTEEEEEEEESCCSTTHH
T ss_pred CCCCCCHHHHHHHHH---HCCCEEEEECCCCHHHHHHHHHHCCCC-HHCC------CEEEEECCEEEEEECCCCCCCCCH
T ss_conf 867877899999999---879989999298166899999983960-4320------405875787875543677789883
Q ss_pred CCCHHHHCCCCCCCCCEEEEECCCCC
Q ss_conf 43433331689989967999929832
Q 004493 325 RKSLFNVFQDGTCHPKMALVIDDRLK 350 (749)
Q Consensus 325 ~KsL~~LFp~g~~~~~mvVIIDDR~d 350 (749)
...+..+.......++-++.|+|+..
T Consensus 144 ~~~~~~~~~~~g~~~~~~i~vGDs~~ 169 (217)
T 3m1y_A 144 GEMLLVLQRLLNISKTNTLVVGDGAN 169 (217)
T ss_dssp HHHHHHHHHHHTCCSTTEEEEECSGG
T ss_pred HHHHHHHHHHCCCCHHHEEEEECCHH
T ss_conf 99999999873999768898968888
No 10
>4eze_A Haloacid dehalogenase-like hydrolase; magnesium binding site, enzyme function initiativ; 2.27A {Salmonella enterica subsp}
Probab=1.00 E-value=1 Score=42.28 Aligned_cols=81 Identities=9% Similarity=0.130 Sum_probs=50.5
Q ss_pred EEECCCHHHHHHHHHHHCCCCEEEEEEECCCHHHHHHHHHHCCCCCCCCCCCCCCCCEEECCCC---------------C
Q ss_conf 9608770667888746202657999996782789999998309899853555667907870589---------------7
Q 004493 260 VRLRPAWEDLRSYLTARGRKRFEVYVCTMAERDYALEMWRLLDPESNLINTKELLDRIVCVKSG---------------S 324 (749)
Q Consensus 260 VKLRPgv~ELr~FL~ak~sk~FELyVyTmGtR~YA~eIlrLLDPdg~LFg~~~l~~RIISresg---------------~ 324 (749)
++++|++.+++..|+ +.-|.++|.|.+.+.++..+++.+.=+ .+|. .+++.+++ .
T Consensus 178 ~~l~pg~~e~L~~Lk---~~G~~v~IvSn~~~~~~~~~l~~lgl~-~~f~------~~l~~~dg~~tg~i~~~~~~~kpk 247 (317)
T 4eze_A 178 MTLSPGLLTILPVIK---AKGFKTAIISGGLDIFTQRLKARYQLD-YAFS------NTVEIRDNVLTDNITLPIMNAANK 247 (317)
T ss_dssp CCBCTTHHHHHHHHH---HTTCEEEEEEEEEHHHHHHHHHHHTCS-EEEE------ECEEEETTEEEEEECSSCCCHHHH
T ss_pred CEECCCHHHHHHHHH---HCCCEEEEEECCCHHHHHHHHHHCCCC-EEEE------EEEEEECCEEEEEEECCCCCCCCC
T ss_conf 887837999999999---689979999185689999999984998-5898------788866886631272146788778
Q ss_pred CCCHHHHCCCCCCCCCEEEEECCCCC
Q ss_conf 43433331689989967999929832
Q 004493 325 RKSLFNVFQDGTCHPKMALVIDDRLK 350 (749)
Q Consensus 325 ~KsL~~LFp~g~~~~~mvVIIDDR~d 350 (749)
...+..+.......++.++.|+|+..
T Consensus 248 p~~~~~~~~~lgv~~~~~i~VGDs~~ 273 (317)
T 4eze_A 248 KQTLVDLAARLNIATENIIACGDGAN 273 (317)
T ss_dssp HHHHHHHHHHHTCCGGGEEEEECSGG
T ss_pred HHHHHHHHHHCCCCCCEEEEEECCHH
T ss_conf 99999999980979200999949988
Done!