BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 004495
(748 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1ITZ|A Chain A, Maize Transketolase In Complex With Tpp
pdb|1ITZ|B Chain B, Maize Transketolase In Complex With Tpp
pdb|1ITZ|C Chain C, Maize Transketolase In Complex With Tpp
Length = 675
Score = 1174 bits (3038), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 558/672 (83%), Positives = 597/672 (88%), Gaps = 1/672 (0%)
Query: 75 AVETLE-TSTDAALVEKSVNTIRFLAVDAVEKANSGHPGLPMGCAPMGHILYDEVMRYNP 133
AVETL+ + L+EKSVNTIRFLA+DAVEKANSGHPGLPMGCAPMGH+LYDEVMRYNP
Sbjct: 2 AVETLQGKAATGELLEKSVNTIRFLAIDAVEKANSGHPGLPMGCAPMGHVLYDEVMRYNP 61
Query: 134 KNPYWFNRDRFVLSAGHGCMLQYALLHLAGYDSVQEDDLKNFRQWGSKTPGHPENFETPG 193
KNPYWFNRDRFVLSAGHGCMLQYALLHLAGYDSV+E+DLK FRQWGS+TPGHPENFETPG
Sbjct: 62 KNPYWFNRDRFVLSAGHGCMLQYALLHLAGYDSVKEEDLKQFRQWGSRTPGHPENFETPG 121
Query: 194 IEVTTGPLGQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGIANEASS 253
+EVTTGPLGQG+ANAVGLALAEKHLAAR+NKPD+EIVDHYTYVILGDGCQMEGIANEA S
Sbjct: 122 VEVTTGPLGQGIANAVGLALAEKHLAARFNKPDSEIVDHYTYVILGDGCQMEGIANEACS 181
Query: 254 LAGHLGLGKLIAFYDDNHISIDGDTEIAFTENVDKRFEGLGWHVIWVKNGNTGYDDIRAA 313
LAGH GLGKLIAFYDDNHISIDGDTEIAFTE+V RFE LGWH IWVKNGNTGYDDIRAA
Sbjct: 182 LAGHWGLGKLIAFYDDNHISIDGDTEIAFTEDVSTRFEALGWHTIWVKNGNTGYDDIRAA 241
Query: 314 IKEAKAVTDKPTLIRVTTTIGFGSPNKANSYSVHGSALGAKEVDATRKNLGWPYEPFHVP 373
IKEAKAVTDKPTLI+VTTTIGFGSPNKANSYSVHGSALGAKEV+ATR+NLGWPY+ F VP
Sbjct: 242 IKEAKAVTDKPTLIKVTTTIGFGSPNKANSYSVHGSALGAKEVEATRQNLGWPYDTFFVP 301
Query: 374 EDVKKHWSRHVAEGATLEAEWNXXXXXXXXXXXXXXXXXXSISSGQLPAGWEKALPTYTP 433
EDVK HWSRH EGA LEA+WN SI +G+LP GW ALP YTP
Sbjct: 302 EDVKSHWSRHTPEGAALEADWNAKFAEYEKKYADDAATLKSIITGELPTGWVDALPKYTP 361
Query: 434 ESPAEATRNLSQTCLNALAKTLPGLLGGSADLASSNMTLLKMFGDFQKDTPEERNVRFGV 493
ESP +ATRNLSQ CLNALA +PGL+GGSADLASSNMTLLKMFGDFQKDT EERNVRFGV
Sbjct: 362 ESPGDATRNLSQQCLNALANVVPGLIGGSADLASSNMTLLKMFGDFQKDTAEERNVRFGV 421
Query: 494 REHGMGAICNGIALHSPGLIPYCATFFVFTDYMRAAIRISALCEAGVIYVMTHDSIGLGE 553
REHGMGAICNGIALHSPG +PYCATFFVFTDYMR A+RISAL EAGVIYVMTHDSIGLGE
Sbjct: 422 REHGMGAICNGIALHSPGFVPYCATFFVFTDYMRGAMRISALSEAGVIYVMTHDSIGLGE 481
Query: 554 DGPTHQPIEHLASFRAMPNILMLRPADGNETAGAYKVAVANRKRPSILALSRQKLPHLAG 613
DGPTHQPIEHL SFRAMPNILMLRPADGNETAGAYKVAV NRKRPSILALSRQKLPHL G
Sbjct: 482 DGPTHQPIEHLVSFRAMPNILMLRPADGNETAGAYKVAVLNRKRPSILALSRQKLPHLPG 541
Query: 614 TSIDGVEKGAYIISDNSSGNKPDVILIGTGSXXXXXXXXXXXXRKGGKAVRVVSFVSWEL 673
TSI+GVEKG Y ISDNS+GNKPD+I++GTGS RK GK VRVVSFVSWEL
Sbjct: 542 TSIEGVEKGGYTISDNSTGNKPDLIVMGTGSELEIAAKAADELRKEGKTVRVVSFVSWEL 601
Query: 674 FDEQSDAYKESVLPAAVSARVSIEAGSTFGWEKIVGSKGKAIGIDRFGASAPAGKIYKEF 733
FDEQSD YKESVLPAAV+AR+SIEAGST GW+K VG++GKAIGID+FGASAPAG IYKE+
Sbjct: 602 FDEQSDEYKESVLPAAVTARISIEAGSTLGWQKYVGAQGKAIGIDKFGASAPAGTIYKEY 661
Query: 734 GITAEAVITAAK 745
GIT E++I AAK
Sbjct: 662 GITVESIIAAAK 673
>pdb|3HYL|A Chain A, Crystal Structure Of Transketolase From Bacillus Anthracis
pdb|3HYL|B Chain B, Crystal Structure Of Transketolase From Bacillus Anthracis
pdb|3M49|A Chain A, Crystal Structure Of Transketolase Complexed With Thiamine
Diphosphate From Bacillus Anthracis
pdb|3M49|B Chain B, Crystal Structure Of Transketolase Complexed With Thiamine
Diphosphate From Bacillus Anthracis
Length = 690
Score = 626 bits (1615), Expect = e-179, Method: Compositional matrix adjust.
Identities = 343/661 (51%), Positives = 435/661 (65%), Gaps = 10/661 (1%)
Query: 91 SVNTIRFLAVDAVEKANSGHPGLPMGCAPMGHILYDEVMRYNPKNPYWFNRDRFVLSAGH 150
S+NTIR L++DA+EKANSGHPG P G AP + L+ + ++NP NP WFNRDRFVLSAGH
Sbjct: 33 SINTIRTLSIDAIEKANSGHPGXPXGAAPXAYTLWTQFXKHNPNNPTWFNRDRFVLSAGH 92
Query: 151 GCMLQYALLHLAGYDSVQEDDLKNFRQWGSKTPGHPENFETPGIEVTTGPLGQGMANAVG 210
G L Y+LLHL+GYD V DDLKNFRQWGSKTPGHPE T G++ TTGPLGQG+A AVG
Sbjct: 93 GSXLLYSLLHLSGYD-VTXDDLKNFRQWGSKTPGHPEYGHTAGVDATTGPLGQGIATAVG 151
Query: 211 LALAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGIANEASSLAGHLGLGKLIAFYDDN 270
A AE+HLAA+YN+ IVDHYTY I GDG EG++ EASSLA HL LG+L+ YD N
Sbjct: 152 XAXAERHLAAKYNRDAYNIVDHYTYAICGDGDLXEGVSAEASSLAAHLQLGRLVVLYDSN 211
Query: 271 HISIDGDTEIAFTENVDKRFEGLGWHVIWVKNGNTGYDDIRAAIKEAKAVTDKPTLIRVT 330
IS+DGD +F+E+V+ R++ GW VI V++GN + I AI+EAKA +PTLI V
Sbjct: 212 DISLDGDLNRSFSESVEDRYKAYGWQVIRVEDGND-IEAIAKAIEEAKADEKRPTLIEVR 270
Query: 331 TTIGFGSPNKANSYSVHGSALGAKEVDATRKNLGWPYEP-FHVPEDVKKHWSRHVAE-GA 388
TTIGFGSPNK+ + HGS LG +E T++ W E FHV E+V +++ + V + G
Sbjct: 271 TTIGFGSPNKSGKSASHGSPLGVEETKLTKEAYAWTAEQDFHVAEEVYENFRKTVQDVGE 330
Query: 389 TLEAEWNXXXXXXXXXXXXXXXXXXSISSGQLPAGWEKALPTYTPESPAEATRNLSQTCL 448
T +AEWN + +G LP GWE+ LPTY S A ATRN S +
Sbjct: 331 TAQAEWNTXLGEYAQAYPELANELQAAXNGLLPEGWEQNLPTYELGSKA-ATRNSSGAVI 389
Query: 449 NALAKTLPGLLGGSADLASSNMTLLKMFGDFQKDTPEERNVRFGVREHGMGAICNGIALH 508
NA+A+++P GGSADLA SN T DF +D +N+ +GVRE GA NGIALH
Sbjct: 390 NAIAESVPSFFGGSADLAGSNKTYXNNEKDFTRDDYSGKNIWYGVREFAXGAAXNGIALH 449
Query: 509 SPGLIPYCATFFVFTDYMRAAIRISALCEAGVIYVMTHDSIGLGEDGPTHQPIEHLASFR 568
GL Y TFFVF+DY+R AIR++AL + V YV THDSI +GEDGPTH+PIE LA+ R
Sbjct: 450 G-GLKTYGGTFFVFSDYLRPAIRLAALXQLPVTYVFTHDSIAVGEDGPTHEPIEQLAALR 508
Query: 569 AMPNILMLRPADGNETAGAYKVAVANRKRPSILALSRQKLPHLAGTSIDGVE---KGAYI 625
A PN+ ++RPADGNE+ A+++A+ + +P+ L L+RQ LP L G D E KGAY+
Sbjct: 509 AXPNVSVIRPADGNESVAAWRLALESTNKPTALVLTRQDLPTLEGAKDDTYEKVAKGAYV 568
Query: 626 ISDNSSGNKPDVILIGTGSXXXXXXXXXXXXRKGGKAVRVVSFVSWELFDEQSDAYKESV 685
+S S DVIL+ TGS G VVS S + F+ Q+ YKESV
Sbjct: 569 VS-ASKKETADVILLATGSEVSLAVEAQKALAVDGVDASVVSXPSXDRFEAQTAEYKESV 627
Query: 686 LPAAVSARVSIEAGSTFGWEKIVGSKGKAIGIDRFGASAPAGKIYKEFGITAEAVITAAK 745
LP AV+ R +IE G+TFGW + VG +G +GID FGASAP KI +E+G T E V+ K
Sbjct: 628 LPKAVTKRFAIEXGATFGWHRYVGLEGDVLGIDTFGASAPGEKIXEEYGFTVENVVRKVK 687
Query: 746 E 746
E
Sbjct: 688 E 688
>pdb|1R9J|A Chain A, Transketolase From Leishmania Mexicana
pdb|1R9J|B Chain B, Transketolase From Leishmania Mexicana
Length = 673
Score = 621 bits (1601), Expect = e-178, Method: Compositional matrix adjust.
Identities = 327/666 (49%), Positives = 426/666 (63%), Gaps = 19/666 (2%)
Query: 86 ALVEKSVNTIRFLAVDAVEKANSGHPGLPMGCAPMGHILYDEVMRYNPKNPYWFNRDRFV 145
A +EK N IR LA D V+ SGHPG PMG APM +L+ EVM+YN ++P W +RDRFV
Sbjct: 4 ASIEKVANCIRCLAADIVQGGKSGHPGTPMGMAPMSAVLWTEVMKYNSQDPDWVDRDRFV 63
Query: 146 LSAGHGCMLQYALLHLAGYDSVQEDDLKNFRQWGSKTPGHPENFETPGIEVTTGPLGQGM 205
+S GHGC LQYALLH+AGY+ + DDLK FRQ GS+TPGHPE F TPG+EVTTGPLGQG+
Sbjct: 64 MSNGHGCALQYALLHMAGYN-LTMDDLKGFRQDGSRTPGHPERFVTPGVEVTTGPLGQGI 122
Query: 206 ANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGIANEASSLAGHLGLGKLIA 265
ANAVGLA+AE HLAA +N+P IVDHYTYV GDGC MEG+ EA SLAGHL L KLI
Sbjct: 123 ANAVGLAIAEAHLAATFNRPGYNIVDHYTYVYCGDGCLMEGVCQEALSLAGHLALEKLIV 182
Query: 266 FYDDNHISIDGDTEIAFTENVDKRFEGLGWHVIWVKNGNTGYDDIRAAIKEAKAVTDKPT 325
YD N+ISIDG T ++FTE +++ +G+HVI VKNG+T Y+ +R A+ EAKA KP
Sbjct: 183 IYDSNYISIDGSTSLSFTEQCHQKYVAMGFHVIEVKNGDTDYEGLRKALAEAKATKGKPK 242
Query: 326 LIRVTTTIGFGSPNKANSYSVHGSALGAKEVDATRKNLGW-PYEPFHVPEDVKKHWSRHV 384
+I TTTIGFGS +K + VHG+ LG +++ + G P + + V +DV+ + H+
Sbjct: 243 MIVQTTTIGFGS-SKQGTEKVHGAPLGEEDIANIKAKFGRDPQKKYDVDDDVRAVFRMHI 301
Query: 385 AEGATLEAEWNXXXXXXXXXXXXXXXXXXSISSGQLPAGWEKALPTYTPESPAEATRNLS 444
+ + + W + G+LP+GWE LPT S A ATR S
Sbjct: 302 DKCSAEQKAWEELLAKYTAAFPAEGAAFVAQMRGELPSGWEAKLPT---NSSAIATRKAS 358
Query: 445 QTCLNALAKTLPGLLGGSADLASSNMT--LLKMFGDFQKDTPEERNVRFGVREHGMGAIC 502
+ CL L +P L+GGSADL SN+T DF + E R +RFGVREH M AI
Sbjct: 359 ENCLAVLFPAIPALMGGSADLTPSNLTRPASANLVDFSSSSKEGRYIRFGVREHAMCAIL 418
Query: 503 NGIALHSPGLIPYCATFFVFTDYMRAAIRISALCEAGVIYVMTHDSIGLGEDGPTHQPIE 562
NG+ H G+IP+ TF F Y A+R++A+ VIYV THDSIG+GEDGPTHQP+E
Sbjct: 419 NGLDAHD-GIIPFGGTFLNFIGYALGAVRLAAISHHRVIYVATHDSIGVGEDGPTHQPVE 477
Query: 563 HLASFRAMPNILMLRPADGNETAGAYKVAVANRKRPSILALSRQKLPHLAGTSIDGVEKG 622
+A+ RAMPN+ ++RP+D ET+GA+ VA+++ P++L LSRQ +G+SI+GV G
Sbjct: 478 LVAALRAMPNLQVIRPSDQTETSGAWAVALSSIHTPTVLCLSRQNTEPQSGSSIEGVRHG 537
Query: 623 AYIISDNSSGNKPDVILIGTGSXXXXXXXXXXXXRKGGKA-VRVVSFVSWELFDEQSDAY 681
AY + D PD+ L+ S G+ VRVVS ELFD Q D Y
Sbjct: 538 AYSVVD-----VPDLQLVIVASGSEVSLAVDAAKALSGELRVRVVSMPCQELFDAQPDTY 592
Query: 682 KESVLPAAVSARVSIEAGSTFGWEKIVGSKGKAIGIDRFGASAPAGKIYKEFGITAEAVI 741
+++VLPA V VS+EA +FGWEK + +G+ FGASAPAG +YK+FGIT E V+
Sbjct: 593 RQAVLPAGVPV-VSVEAYVSFGWEKYSHAH---VGMSGFGASAPAGVLYKKFGITVEEVV 648
Query: 742 TAAKEV 747
+E+
Sbjct: 649 RTGREL 654
>pdb|1TRK|A Chain A, Refined Structure Of Transketolase From Saccharomyces
Cerevisiae At 2.0 Angstroms Resolution
pdb|1TRK|B Chain B, Refined Structure Of Transketolase From Saccharomyces
Cerevisiae At 2.0 Angstroms Resolution
pdb|1NGS|A Chain A, Complex Of Transketolase With Thiamin Diphosphate, Ca2+
And Acceptor Substrate Erythrose-4-phosphate
pdb|1NGS|B Chain B, Complex Of Transketolase With Thiamin Diphosphate, Ca2+
And Acceptor Substrate Erythrose-4-phosphate
pdb|1GPU|A Chain A, Transketolase Complex With Reaction Intermediate
pdb|1GPU|B Chain B, Transketolase Complex With Reaction Intermediate
Length = 680
Score = 619 bits (1596), Expect = e-177, Method: Compositional matrix adjust.
Identities = 333/665 (50%), Positives = 424/665 (63%), Gaps = 18/665 (2%)
Query: 91 SVNTIRFLAVDAVEKANSGHPGLPMGCAPMGHILYDEVMRYNPKNPYWFNRDRFVLSAGH 150
+V+TIR LAVD V KANSGHPG P+G AP H+L+ + MR NP NP W NRDRFVLS GH
Sbjct: 11 AVSTIRILAVDTVSKANSGHPGAPLGMAPAAHVLWSQ-MRMNPTNPDWINRDRFVLSNGH 69
Query: 151 GCMLQYALLHLAGYDSVQEDDLKNFRQWGSKTPGHPENFETPGIEVTTGPLGQGMANAVG 210
L Y++LHL GYD + +DLK FRQ GS+TPGHPE FE PG+EVTTGPLGQG++NAVG
Sbjct: 70 AVALLYSMLHLTGYD-LSIEDLKQFRQLGSRTPGHPE-FELPGVEVTTGPLGQGISNAVG 127
Query: 211 LALAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGIANEASSLAGHLGLGKLIAFYDDN 270
+A+A+ +LAA YNKP + D+YTYV LGDGC EGI++EASSLAGHL LG LIA YDDN
Sbjct: 128 MAMAQANLAATYNKPGFTLSDNYTYVFLGDGCLQEGISSEASSLAGHLKLGNLIAIYDDN 187
Query: 271 HISIDGDTEIAFTENVDKRFEGLGWHVIWVKNGNTGYDDIRAAIKEAKAVTDKPTLIRVT 330
I+IDG T I+F E+V KR+E GW V++V+NGN I AI +AK DKPTLI++T
Sbjct: 188 KITIDGATSISFDEDVAKRYEAYGWEVLYVENGNEDLAGIAKAIAQAKLSKDKPTLIKMT 247
Query: 331 TTIGFGSPNKANSYSVHGSALGAKEVDATRKNLGW-PYEPFHVPEDVKKHWSRHVAE-GA 388
TTIG+GS + A S+SVHG+ L A +V + G+ P + F VP++V H+ + + + G
Sbjct: 248 TTIGYGSLH-AGSHSVHGAPLKADDVKQLKSKFGFNPDKSFVVPQEVYDHYQKTILKPGV 306
Query: 389 TLEAEWNXXXXXXXXXXXXXXXXXXSISSGQLPAGWEKALPTYTPESPAEATRNLSQTCL 448
+WN SGQLPA WE LPTYT + A ATR LS+T L
Sbjct: 307 EANNKWNKLFSEYQKKFPELGAELARRLSGQLPANWESKLPTYTAKDSAVATRKLSETVL 366
Query: 449 NALAKTLPGLLGGSADLASSNMTLLKMFGDFQKDTP-----EERNVRFGVREHGMGAICN 503
+ LP L+GGSADL SN+T K DFQ + R +R+G+REH MGAI N
Sbjct: 367 EDVYNQLPELIGGSADLTPSNLTRWKEALDFQPPSSGSGNYSGRYIRYGIREHAMGAIMN 426
Query: 504 GIALHSPGLIPYCATFFVFTDYMRAAIRISALCEAGVIYVMTHDSIGLGEDGPTHQPIEH 563
GI+ PY TF F Y A+R+SAL VI+V THDSIG+GEDGPTHQPIE
Sbjct: 427 GISAFGANYKPYGGTFLNFVSYAAGAVRLSALSGHPVIWVATHDSIGVGEDGPTHQPIET 486
Query: 564 LASFRAMPNILMLRPADGNETAGAYKVAVANRKRPSILALSRQKLPHLAGTSIDGVEKGA 623
LA FR++PNI + RPADGNE + AYK ++ ++ PSI+ALSRQ LP L G+SI+ KG
Sbjct: 487 LAHFRSLPNIQVWRPADGNEVSAAYKNSLESKHTPSIIALSRQNLPQLEGSSIESASKGG 546
Query: 624 YIISDNSSGNKPDVILIGTGSXXXXXXXXXXXXRKGGKAVRVVSFVSWELFDEQSDAYKE 683
Y++ D ++ PD+IL+ TGS RVVS + FD+Q Y+
Sbjct: 547 YVLQDVAN---PDIILVATGSEVSLSVEAAKTLAAKNIKARVVSLPDFFTFDKQPLEYRL 603
Query: 684 SVLPAAVSARVSIEAGSTFGWEKIVGSKGKAIGIDRFGASAPAGKIYKEFGITAEAVITA 743
SVLP V +S+E +T W K ++ GIDRFGAS A +++K FG T E V
Sbjct: 604 SVLPDNVPI-MSVEVLATTCWGKYA---HQSFGIDRFGASGKAPEVFKFFGFTPEGVAER 659
Query: 744 AKEVC 748
A++
Sbjct: 660 AQKTI 664
>pdb|1TKA|A Chain A, Specificity Of Coenzyme Binding In Thiamin Diphosphate
Dependent Enzymes: Crystal Structures Of Yeast
Transketolase In Complex With Analogs Of Thiamin
Diphosphate
pdb|1TKA|B Chain B, Specificity Of Coenzyme Binding In Thiamin Diphosphate
Dependent Enzymes: Crystal Structures Of Yeast
Transketolase In Complex With Analogs Of Thiamin
Diphosphate
pdb|1TKB|A Chain A, Specificity Of Coenzyme Binding In Thiamin Diphosphate
Dependent Enzymes: Crystal Structures Of Yeast
Transketolase In Complex With Analogs Of Thiamin
Diphosphate
pdb|1TKB|B Chain B, Specificity Of Coenzyme Binding In Thiamin Diphosphate
Dependent Enzymes: Crystal Structures Of Yeast
Transketolase In Complex With Analogs Of Thiamin
Diphosphate
pdb|1TKC|A Chain A, Specificity Of Coenzyme Binding In Thiamin Diphosphate
Dependent Enzymes: Crystal Structures Of Yeast
Transketolase In Complex With Analogs Of Thiamin
Diphosphate
pdb|1TKC|B Chain B, Specificity Of Coenzyme Binding In Thiamin Diphosphate
Dependent Enzymes: Crystal Structures Of Yeast
Transketolase In Complex With Analogs Of Thiamin
Diphosphate
Length = 678
Score = 619 bits (1595), Expect = e-177, Method: Compositional matrix adjust.
Identities = 333/665 (50%), Positives = 424/665 (63%), Gaps = 18/665 (2%)
Query: 91 SVNTIRFLAVDAVEKANSGHPGLPMGCAPMGHILYDEVMRYNPKNPYWFNRDRFVLSAGH 150
+V+TIR LAVD V KANSGHPG P+G AP H+L+ + MR NP NP W NRDRFVLS GH
Sbjct: 9 AVSTIRILAVDTVSKANSGHPGAPLGMAPAAHVLWSQ-MRMNPTNPDWINRDRFVLSNGH 67
Query: 151 GCMLQYALLHLAGYDSVQEDDLKNFRQWGSKTPGHPENFETPGIEVTTGPLGQGMANAVG 210
L Y++LHL GYD + +DLK FRQ GS+TPGHPE FE PG+EVTTGPLGQG++NAVG
Sbjct: 68 AVALLYSMLHLTGYD-LSIEDLKQFRQLGSRTPGHPE-FELPGVEVTTGPLGQGISNAVG 125
Query: 211 LALAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGIANEASSLAGHLGLGKLIAFYDDN 270
+A+A+ +LAA YNKP + D+YTYV LGDGC EGI++EASSLAGHL LG LIA YDDN
Sbjct: 126 MAMAQANLAATYNKPGFTLSDNYTYVFLGDGCLQEGISSEASSLAGHLKLGNLIAIYDDN 185
Query: 271 HISIDGDTEIAFTENVDKRFEGLGWHVIWVKNGNTGYDDIRAAIKEAKAVTDKPTLIRVT 330
I+IDG T I+F E+V KR+E GW V++V+NGN I AI +AK DKPTLI++T
Sbjct: 186 KITIDGATSISFDEDVAKRYEAYGWEVLYVENGNEDLAGIAKAIAQAKLSKDKPTLIKMT 245
Query: 331 TTIGFGSPNKANSYSVHGSALGAKEVDATRKNLGW-PYEPFHVPEDVKKHWSRHVAE-GA 388
TTIG+GS + A S+SVHG+ L A +V + G+ P + F VP++V H+ + + + G
Sbjct: 246 TTIGYGSLH-AGSHSVHGAPLKADDVKQLKSKFGFNPDKSFVVPQEVYDHYQKTILKPGV 304
Query: 389 TLEAEWNXXXXXXXXXXXXXXXXXXSISSGQLPAGWEKALPTYTPESPAEATRNLSQTCL 448
+WN SGQLPA WE LPTYT + A ATR LS+T L
Sbjct: 305 EANNKWNKLFSEYQKKFPELGAELARRLSGQLPANWESKLPTYTAKDSAVATRKLSETVL 364
Query: 449 NALAKTLPGLLGGSADLASSNMTLLKMFGDFQKDTP-----EERNVRFGVREHGMGAICN 503
+ LP L+GGSADL SN+T K DFQ + R +R+G+REH MGAI N
Sbjct: 365 EDVYNQLPELIGGSADLTPSNLTRWKEALDFQPPSSGSGNYSGRYIRYGIREHAMGAIMN 424
Query: 504 GIALHSPGLIPYCATFFVFTDYMRAAIRISALCEAGVIYVMTHDSIGLGEDGPTHQPIEH 563
GI+ PY TF F Y A+R+SAL VI+V THDSIG+GEDGPTHQPIE
Sbjct: 425 GISAFGANYKPYGGTFLNFVSYAAGAVRLSALSGHPVIWVATHDSIGVGEDGPTHQPIET 484
Query: 564 LASFRAMPNILMLRPADGNETAGAYKVAVANRKRPSILALSRQKLPHLAGTSIDGVEKGA 623
LA FR++PNI + RPADGNE + AYK ++ ++ PSI+ALSRQ LP L G+SI+ KG
Sbjct: 485 LAHFRSLPNIQVWRPADGNEVSAAYKNSLESKHTPSIIALSRQNLPQLEGSSIESASKGG 544
Query: 624 YIISDNSSGNKPDVILIGTGSXXXXXXXXXXXXRKGGKAVRVVSFVSWELFDEQSDAYKE 683
Y++ D ++ PD+IL+ TGS RVVS + FD+Q Y+
Sbjct: 545 YVLQDVAN---PDIILVATGSEVSLSVEAAKTLAAKNIKARVVSLPDFFTFDKQPLEYRL 601
Query: 684 SVLPAAVSARVSIEAGSTFGWEKIVGSKGKAIGIDRFGASAPAGKIYKEFGITAEAVITA 743
SVLP V +S+E +T W K ++ GIDRFGAS A +++K FG T E V
Sbjct: 602 SVLPDNVPI-MSVEVLATTCWGKYA---HQSFGIDRFGASGKAPEVFKFFGFTPEGVAER 657
Query: 744 AKEVC 748
A++
Sbjct: 658 AQKTI 662
>pdb|1AY0|A Chain A, Identification Of Catalytically Important Residues In
Yeast Transketolase
pdb|1AY0|B Chain B, Identification Of Catalytically Important Residues In
Yeast Transketolase
Length = 680
Score = 615 bits (1586), Expect = e-176, Method: Compositional matrix adjust.
Identities = 332/665 (49%), Positives = 423/665 (63%), Gaps = 18/665 (2%)
Query: 91 SVNTIRFLAVDAVEKANSGHPGLPMGCAPMGHILYDEVMRYNPKNPYWFNRDRFVLSAGH 150
+V+TIR LAVD V KANSGHPG P+G AP H+L+ + MR NP NP W NRDRFVLS GH
Sbjct: 11 AVSTIRILAVDTVSKANSGHPGAPLGMAPAAHVLWSQ-MRMNPTNPDWINRDRFVLSNGH 69
Query: 151 GCMLQYALLHLAGYDSVQEDDLKNFRQWGSKTPGHPENFETPGIEVTTGPLGQGMANAVG 210
L Y++LHL GYD + +DLK FRQ GS+TPGHPE FE PG+EVTTGPLGQG++NAVG
Sbjct: 70 AVALLYSMLHLTGYD-LSIEDLKQFRQLGSRTPGHPE-FELPGVEVTTGPLGQGISNAVG 127
Query: 211 LALAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGIANEASSLAGHLGLGKLIAFYDDN 270
+A+A+ +LAA YNKP + D+YTYV LGDGC EGI++EASSLAGHL LG LIA YDDN
Sbjct: 128 MAMAQANLAATYNKPGFTLSDNYTYVFLGDGCLQEGISSEASSLAGHLKLGNLIAIYDDN 187
Query: 271 HISIDGDTEIAFTENVDKRFEGLGWHVIWVKNGNTGYDDIRAAIKEAKAVTDKPTLIRVT 330
I+IDG T I+F E+V KR+E GW V++V+NGN I AI +AK DKPTLI++T
Sbjct: 188 KITIDGATSISFDEDVAKRYEAYGWEVLYVENGNEDLAGIAKAIAQAKLSKDKPTLIKMT 247
Query: 331 TTIGFGSPNKANSYSVHGSALGAKEVDATRKNLGW-PYEPFHVPEDVKKHWSRHVAE-GA 388
TTIG+GS + A S+SV G+ L A +V + G+ P + F VP++V H+ + + + G
Sbjct: 248 TTIGYGSLH-AGSHSVAGAPLKADDVKQLKSKFGFNPDKSFVVPQEVYDHYQKTILKPGV 306
Query: 389 TLEAEWNXXXXXXXXXXXXXXXXXXSISSGQLPAGWEKALPTYTPESPAEATRNLSQTCL 448
+WN SGQLPA WE LPTYT + A ATR LS+T L
Sbjct: 307 EANNKWNKLFSEYQKKFPELGAELARRLSGQLPANWESKLPTYTAKDSAVATRKLSETVL 366
Query: 449 NALAKTLPGLLGGSADLASSNMTLLKMFGDFQKDTP-----EERNVRFGVREHGMGAICN 503
+ LP L+GGSADL SN+T K DFQ + R +R+G+REH MGAI N
Sbjct: 367 EDVYNQLPELIGGSADLTPSNLTRWKEALDFQPPSSGSGNYSGRYIRYGIREHAMGAIMN 426
Query: 504 GIALHSPGLIPYCATFFVFTDYMRAAIRISALCEAGVIYVMTHDSIGLGEDGPTHQPIEH 563
GI+ PY TF F Y A+R+SAL VI+V THDSIG+GEDGPTHQPIE
Sbjct: 427 GISAFGANYKPYGGTFLNFVSYAAGAVRLSALSGHPVIWVATHDSIGVGEDGPTHQPIET 486
Query: 564 LASFRAMPNILMLRPADGNETAGAYKVAVANRKRPSILALSRQKLPHLAGTSIDGVEKGA 623
LA FR++PNI + RPADGNE + AYK ++ ++ PSI+ALSRQ LP L G+SI+ KG
Sbjct: 487 LAHFRSLPNIQVWRPADGNEVSAAYKNSLESKHTPSIIALSRQNLPQLEGSSIESASKGG 546
Query: 624 YIISDNSSGNKPDVILIGTGSXXXXXXXXXXXXRKGGKAVRVVSFVSWELFDEQSDAYKE 683
Y++ D ++ PD+IL+ TGS RVVS + FD+Q Y+
Sbjct: 547 YVLQDVAN---PDIILVATGSEVSLSVEAAKTLAAKNIKARVVSLPDFFTFDKQPLEYRL 603
Query: 684 SVLPAAVSARVSIEAGSTFGWEKIVGSKGKAIGIDRFGASAPAGKIYKEFGITAEAVITA 743
SVLP V +S+E +T W K ++ GIDRFGAS A +++K FG T E V
Sbjct: 604 SVLPDNVPI-MSVEVLATTCWGKYA---HQSFGIDRFGASGKAPEVFKFFGFTPEGVAER 659
Query: 744 AKEVC 748
A++
Sbjct: 660 AQKTI 664
>pdb|1QGD|A Chain A, Transketolase From Escherichia Coli
pdb|1QGD|B Chain B, Transketolase From Escherichia Coli
Length = 662
Score = 597 bits (1540), Expect = e-171, Method: Compositional matrix adjust.
Identities = 315/661 (47%), Positives = 415/661 (62%), Gaps = 13/661 (1%)
Query: 93 NTIRFLAVDAVEKANSGHPGLPMGCAPMGHILYDEVMRYNPKNPYWFNRDRFVLSAGHGC 152
N IR L++DAV+KA SGHPG PMG A + +L+ + +++NP+NP W +RDRFVLS GHG
Sbjct: 8 NAIRALSMDAVQKAKSGHPGAPMGMADIAEVLWRDFLKHNPQNPSWADRDRFVLSNGHGS 67
Query: 153 MLQYALLHLAGYDSVQEDDLKNFRQWGSKTPGHPENFETPGIEVTTGPLGQGMANAVGLA 212
ML Y+LLHL GYD E+ LKNFRQ SKTPGHPE +T G+E TTGPLGQG+ANAVG+A
Sbjct: 68 MLIYSLLHLTGYDLPMEE-LKNFRQLHSKTPGHPEVGKTAGVETTTGPLGQGIANAVGMA 126
Query: 213 LAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGIANEASSLAGHLGLGKLIAFYDDNHI 272
+AEK LAA++N+P ++IVDHYTY +GDGC MEGI++E SLAG L LGKLIAFYDDN I
Sbjct: 127 IAEKTLAAQFNRPGHDIVDHYTYAFMGDGCMMEGISHEVCSLAGTLKLGKLIAFYDDNGI 186
Query: 273 SIDGDTEIAFTENVDKRFEGLGWHVIWVKNGNTGYDDIRAAIKEAKAVTDKPTLIRVTTT 332
SIDG E FT++ RFE GWHVI +G+ I+ A++EA+AVTDKP+L+ T
Sbjct: 187 SIDGHVEGWFTDDTAMRFEAYGWHVIRDIDGHDA-ASIKRAVEEARAVTDKPSLLMCKTI 245
Query: 333 IGFGSPNKANSYSVHGSALGAKEVDATRKNLGWPYEPFHVPEDVKKHWSRHVAEGATLEA 392
IGFGSPNKA ++ HG+ LG E+ TR+ LGW Y PF +P ++ W A G E+
Sbjct: 246 IGFGSPNKAGTHDSHGAPLGDAEIALTREQLGWKYAPFEIPSEIYAQWDAKEA-GQAKES 304
Query: 393 EWNXXXXXXXXXXXXXXXXXXSISSGQLPAGWEKALPTYTPE---SPAE-ATRNLSQTCL 448
WN G++P+ ++ + + +PA+ A+R SQ +
Sbjct: 305 AWNEKFAAYAKAYPQEAAEFTRRMKGEMPSDFDAKAKEFIAKLQANPAKIASRKASQNAI 364
Query: 449 NALAKTLPGLLGGSADLASSNMTLLKMFGDFQKDTPEERNVRFGVREHGMGAICNGIALH 508
A LP LGGSADLA SN+TL +D + +GVRE GM AI NGI+LH
Sbjct: 365 EAFGPLLPEFLGGSADLAPSNLTLWSGSKAINEDAAGNY-IHYGVREFGMTAIANGISLH 423
Query: 509 SPGLIPYCATFFVFTDYMRAAIRISALCEAGVIYVMTHDSIGLGEDGPTHQPIEHLASFR 568
G +PY +TF +F +Y R A+R++AL + + V THDSIGLGEDGPTHQP+E +AS R
Sbjct: 424 G-GFLPYTSTFLMFVEYARNAVRMAALMKQRQVMVYTHDSIGLGEDGPTHQPVEQVASLR 482
Query: 569 AMPNILMLRPADGNETAGAYKVAVANRKRPSILALSRQKLPHLAGT--SIDGVEKGAYII 626
PN+ RP D E+A A+K V + P+ L LSRQ L T + + +G Y++
Sbjct: 483 VTPNMSTWRPCDQVESAVAWKYGVERQDGPTALILSRQNLAQQERTEEQLANIARGGYVL 542
Query: 627 SDNSSGNKPDVILIGTGSXXXXXXXXXXXXRKGGKAVRVVSFVSWELFDEQSDAYKESVL 686
D +P++I I TGS G RVVS S + FD+Q AY+ESVL
Sbjct: 543 KD--CAGQPELIFIATGSEVELAVAAYEKLTAEGVKARVVSMPSTDAFDKQDAAYRESVL 600
Query: 687 PAAVSARVSIEAGSTFGWEKIVGSKGKAIGIDRFGASAPAGKIYKEFGITAEAVITAAKE 746
P AV+ARV++EAG W K VG G +G+ FG SAPA +++EFG T + V+ AKE
Sbjct: 601 PKAVTARVAVEAGIADYWYKYVGLNGAIVGMTTFGESAPAELLFEEFGFTVDNVVAKAKE 660
Query: 747 V 747
+
Sbjct: 661 L 661
>pdb|2R5N|A Chain A, Crystal Structure Of Transketolase From Escherichia Coli
In Noncovalent Complex With Acceptor Aldose Ribose
5-Phosphate
pdb|2R5N|B Chain B, Crystal Structure Of Transketolase From Escherichia Coli
In Noncovalent Complex With Acceptor Aldose Ribose
5-Phosphate
pdb|2R8O|A Chain A, Transketolase From E. Coli In Complex With Substrate D-
Xylulose-5-Phosphate
pdb|2R8O|B Chain B, Transketolase From E. Coli In Complex With Substrate D-
Xylulose-5-Phosphate
pdb|2R8P|A Chain A, Transketolase From E. Coli In Complex With Substrate D-
Fructose-6-Phosphate
pdb|2R8P|B Chain B, Transketolase From E. Coli In Complex With Substrate D-
Fructose-6-Phosphate
Length = 669
Score = 596 bits (1537), Expect = e-170, Method: Compositional matrix adjust.
Identities = 315/661 (47%), Positives = 414/661 (62%), Gaps = 13/661 (1%)
Query: 93 NTIRFLAVDAVEKANSGHPGLPMGCAPMGHILYDEVMRYNPKNPYWFNRDRFVLSAGHGC 152
N IR L++DAV+KA SGHPG PMG A + +L+ + +++NP+NP W +RDRFVLS GHG
Sbjct: 9 NAIRALSMDAVQKAKSGHPGAPMGMADIAEVLWRDFLKHNPQNPSWADRDRFVLSNGHGS 68
Query: 153 MLQYALLHLAGYDSVQEDDLKNFRQWGSKTPGHPENFETPGIEVTTGPLGQGMANAVGLA 212
ML Y+LLHL GYD E+ LKNFRQ SKTPGHPE T G+E TTGPLGQG+ANAVG+A
Sbjct: 69 MLIYSLLHLTGYDLPMEE-LKNFRQLHSKTPGHPEVGYTAGVETTTGPLGQGIANAVGMA 127
Query: 213 LAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGIANEASSLAGHLGLGKLIAFYDDNHI 272
+AEK LAA++N+P ++IVDHYTY +GDGC MEGI++E SLAG L LGKLIAFYDDN I
Sbjct: 128 IAEKTLAAQFNRPGHDIVDHYTYAFMGDGCMMEGISHEVCSLAGTLKLGKLIAFYDDNGI 187
Query: 273 SIDGDTEIAFTENVDKRFEGLGWHVIWVKNGNTGYDDIRAAIKEAKAVTDKPTLIRVTTT 332
SIDG E FT++ RFE GWHVI +G+ I+ A++EA+AVTDKP+L+ T
Sbjct: 188 SIDGHVEGWFTDDTAMRFEAYGWHVIRDIDGHDA-ASIKRAVEEARAVTDKPSLLMCKTI 246
Query: 333 IGFGSPNKANSYSVHGSALGAKEVDATRKNLGWPYEPFHVPEDVKKHWSRHVAEGATLEA 392
IGFGSPNKA ++ HG+ LG E+ TR+ LGW Y PF +P ++ W A G E+
Sbjct: 247 IGFGSPNKAGTHDSHGAPLGDAEIALTREQLGWKYAPFEIPSEIYAQWDAKEA-GQAKES 305
Query: 393 EWNXXXXXXXXXXXXXXXXXXSISSGQLPAGWEKALPTYTPE---SPAE-ATRNLSQTCL 448
WN G++P+ ++ + + +PA+ A+R SQ +
Sbjct: 306 AWNEKFAAYAKAYPQEAAEFTRRMKGEMPSDFDAKAKEFIAKLQANPAKIASRKASQNAI 365
Query: 449 NALAKTLPGLLGGSADLASSNMTLLKMFGDFQKDTPEERNVRFGVREHGMGAICNGIALH 508
A LP LGGSADLA SN+TL +D + +GVRE GM AI NGI+LH
Sbjct: 366 EAFGPLLPEFLGGSADLAPSNLTLWSGSKAINEDAAGNY-IHYGVREFGMTAIANGISLH 424
Query: 509 SPGLIPYCATFFVFTDYMRAAIRISALCEAGVIYVMTHDSIGLGEDGPTHQPIEHLASFR 568
G +PY +TF +F +Y R A+R++AL + + V THDSIGLGEDGPTHQP+E +AS R
Sbjct: 425 G-GFLPYTSTFLMFVEYARNAVRMAALMKQRQVMVYTHDSIGLGEDGPTHQPVEQVASLR 483
Query: 569 AMPNILMLRPADGNETAGAYKVAVANRKRPSILALSRQKLPHLAGT--SIDGVEKGAYII 626
PN+ RP D E+A A+K V + P+ L LSRQ L T + + +G Y++
Sbjct: 484 VTPNMSTWRPCDQVESAVAWKYGVERQDGPTALILSRQNLAQQERTEEQLANIARGGYVL 543
Query: 627 SDNSSGNKPDVILIGTGSXXXXXXXXXXXXRKGGKAVRVVSFVSWELFDEQSDAYKESVL 686
D +P++I I TGS G RVVS S + FD+Q AY+ESVL
Sbjct: 544 KD--CAGQPELIFIATGSEVELAVAAYEKLTAEGVKARVVSMPSTDAFDKQDAAYRESVL 601
Query: 687 PAAVSARVSIEAGSTFGWEKIVGSKGKAIGIDRFGASAPAGKIYKEFGITAEAVITAAKE 746
P AV+ARV++EAG W K VG G +G+ FG SAPA +++EFG T + V+ AKE
Sbjct: 602 PKAVTARVAVEAGIADYWYKYVGLNGAIVGMTTFGESAPAELLFEEFGFTVDNVVAKAKE 661
Query: 747 V 747
+
Sbjct: 662 L 662
>pdb|2E6K|A Chain A, X-Ray Structure Of Thermus Thermopilus Hb8 Tt0505
pdb|2E6K|B Chain B, X-Ray Structure Of Thermus Thermopilus Hb8 Tt0505
pdb|2E6K|C Chain C, X-Ray Structure Of Thermus Thermopilus Hb8 Tt0505
pdb|2E6K|D Chain D, X-Ray Structure Of Thermus Thermopilus Hb8 Tt0505
Length = 651
Score = 591 bits (1523), Expect = e-169, Method: Compositional matrix adjust.
Identities = 323/653 (49%), Positives = 416/653 (63%), Gaps = 17/653 (2%)
Query: 91 SVNTIRFLAVDAVEKANSGHPGLPMGCAPMGHILYDEVMRYNPKNPYWFNRDRFVLSAGH 150
SVN IRFLA+DAVEKA SGHPG P G AP+ ++L+ EV R+NP +P W +RDRFVLSAGH
Sbjct: 11 SVNAIRFLAIDAVEKARSGHPGXPXGXAPLAYLLFREVXRHNPLDPDWPDRDRFVLSAGH 70
Query: 151 GCMLQYALLHLAGYDSVQEDDLKNFRQWGSKTPGHPENFETPGIEVTTGPLGQGMANAVG 210
G L YA+LHL GYD + ++LK+FRQWGSKTPGHPE TPG+EVTTGPLGQG++ AVG
Sbjct: 71 GSXLLYAVLHLTGYD-LPLEELKSFRQWGSKTPGHPERGHTPGVEVTTGPLGQGISTAVG 129
Query: 211 LALAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGIANEASSLAGHLGLGKLIAFYDDN 270
LALAE+ LAA +N+P + +VDHYTYV+ DG EG++ EA+SLAGH GL KLI F+DDN
Sbjct: 130 LALAERKLAAEFNRPGHVVVDHYTYVLASDGDLXEGVSGEAASLAGHWGLSKLIVFWDDN 189
Query: 271 HISIDGDTEIAFTENVDKRFEGLGWHVIWVKNGNTGYDDIRAAIKEAKAVTDKPTLIRVT 330
ISIDG T++AFTE+V R+ GW + V++ N + +R AIK AK + ++PTLI V
Sbjct: 190 RISIDGPTDLAFTEDVLARYRAYGWQTLRVEDVND-LEALRKAIKLAK-LDERPTLIAVR 247
Query: 331 TTIGFGSPNKANSYSVHGSALGAKEVDATRKNLGWPYEPFHVPEDVKKHWSRHVAEGATL 390
+ IGFGSP K +S HG LG + V+ATR+NLGWPY PF VPE+V +H +G
Sbjct: 248 SHIGFGSP-KQDSAKAHGEPLGPEAVEATRRNLGWPYPPFVVPEEVYRHXDXR-EKGRAW 305
Query: 391 EAEWNXXXXXXXXXXXXXXXXXXSISSGQLPAGWEKALPTYTPESPAEATRNLSQTCLNA 450
+ W G+LP E+ P ATR S LN
Sbjct: 306 QEAWEKALEAYARAYPDLHQELXRRLRGELPPLPEEPPSFDKP----IATRAASGRALNL 361
Query: 451 LAKTLPGLLGGSADLASSNMTLLKMFGDFQKDTPEERNVRFGVREHGMGAICNGIALHSP 510
LA LP LLGGSADL SN T + DF + P R + FGVREH GAI NG+ LH
Sbjct: 362 LAPRLPELLGGSADLTPSNNTKAEGXEDFSRANPLGRYLHFGVREHAXGAILNGLNLHG- 420
Query: 511 GLIPYCATFFVFTDYMRAAIRISALCEAGVIYVMTHDSIGLGEDGPTHQPIEHLASFRAM 570
G Y TF VF+DY R AIR++AL ++V THDSI LGEDGPTHQP+EHL S RA
Sbjct: 421 GYRAYGGTFLVFSDYXRPAIRLAALXGVPTVFVFTHDSIALGEDGPTHQPVEHLXSLRAX 480
Query: 571 PNILMLRPADGNETAGAYKVAVANRKRPSILALSRQKLPHLAGTSIDGVEKGAYIISDNS 630
PN+ ++RPAD ET A+ VA+ ++ P+ L L+RQ +P L+ G+ +G Y++ D
Sbjct: 481 PNLFVIRPADAYETFYAWLVALRRKEGPTALVLTRQAVPLLSPEKARGLLRGGYVLEDV- 539
Query: 631 SGNKPDVILIGTGSXXXXXXXXXXXXRKGGKAVRVVSFVSWELFDEQSDAYKESVLPAAV 690
+P +L+ TGS R+ G VRVVS S+ELF Q +AY++ VLP +
Sbjct: 540 --EEPQGVLVATGSEVHLALRAQALLREKGVRVRVVSLPSFELFAAQPEAYRKEVLPPGL 597
Query: 691 SARVSIEAGSTFGWEKIVGSKGKAIGIDRFGASAPAGKIYKEFGITAEAVITA 743
V++EAG++ GWE+ K + +DRFGASAP ++Y+ G T E V A
Sbjct: 598 PV-VAVEAGASLGWERYA---HKVVALDRFGASAPYPEVYERLGFTPERVAEA 646
>pdb|3UPT|A Chain A, Crystal Structure Of A Transketolase From Burkholderia
Pseudomallei Bound To Tpp, Calcium And
Ribose-5-Phosphate
pdb|3UPT|B Chain B, Crystal Structure Of A Transketolase From Burkholderia
Pseudomallei Bound To Tpp, Calcium And
Ribose-5-Phosphate
Length = 711
Score = 553 bits (1424), Expect = e-157, Method: Compositional matrix adjust.
Identities = 325/679 (47%), Positives = 407/679 (59%), Gaps = 19/679 (2%)
Query: 81 TSTDAALVEKSVNTIRFLAVDAVEKANSGHPGLPMGCAPMGHILYDEVMRYNPKNPYWFN 140
T++ A N IR LA+DAV++ANSGHPG+PMG A +G L+ +++NP NP+W +
Sbjct: 38 TTSSPASTTLMANAIRALAMDAVQQANSGHPGMPMGMAEIGVALWSRHLKHNPTNPHWAD 97
Query: 141 RDRFVLSAGHGCMLQYALLHLAGYDSVQEDDLKNFRQWGSKTPGHPENFETPGIEVTTGP 200
RDRFVLS GHG ML Y+LLHL GYD + ++LKNFRQ SKTPGHPE TPG+E TTGP
Sbjct: 98 RDRFVLSNGHGSMLLYSLLHLTGYD-LPIEELKNFRQLHSKTPGHPEYGITPGVETTTGP 156
Query: 201 LGQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGIANEASSLAGHLGL 260
LGQG+ANAVG+AL E LAA +N+ D +IVDH+TYV LGDGC MEGI++EA SLAG L L
Sbjct: 157 LGQGLANAVGMALGEALLAAEFNRDDAKIVDHHTYVFLGDGCLMEGISHEACSLAGTLKL 216
Query: 261 GKLIAFYDDNHISIDGDTEIAFTENVDKRFEGLGWHVIWVKNGNTGYDDIRAAIKEAKAV 320
KLIA YDDN ISIDGD F ++ KRFE GW+VI NG+ A K +
Sbjct: 217 NKLIALYDDNGISIDGDVVNWFHDDTPKRFEAYGWNVIPNVNGHDVDAIDAAIAKAKR-- 274
Query: 321 TDKPTLIRVTTTIGFGSPNKANSYSVHGSALGAKEVDATRKNLGWPYEPFHVPEDVKKHW 380
+DKP+LI T IG G+ KA + VHG+ LGA E+ TR+ LGW + PF +P++V W
Sbjct: 275 SDKPSLICCKTRIGNGAATKAGGHDVHGAPLGADEIAKTREALGWTWAPFVIPQEVYAAW 334
Query: 381 SRHVAEGATLEAEWNXXXXXXXXXXXXXXXXXXSISSGQLP----AGWEKALPTYTPESP 436
A G E +WN +G LP A +
Sbjct: 335 DAKEA-GKRSEDDWNAAFAQYRAKYPAEAAEFERRMAGTLPADWAAKAAAIVAGANERGE 393
Query: 437 AEATRNLSQTCLNALAKTLPGLLGGSADLASSNMTLLKMFGDFQ--KDTPEER---NVRF 491
ATR SQ + LA LP LLGGSADL SN+T K + D P + ++ +
Sbjct: 394 TVATRKASQQTIEGLAAVLPELLGGSADLTGSNLTNWKASKAVRANADGPGVQWGNHINY 453
Query: 492 GVREHGMGAICNGIALHSPGLIPYCATFFVFTDYMRAAIRISALCEAGVIYVMTHDSIGL 551
GVRE GM A NG+ LH G P+ TF F+DY R A+R++AL + I+V THDSIGL
Sbjct: 454 GVREFGMSAAINGLVLHG-GYKPFGGTFLTFSDYSRNALRVAALMKVPSIFVFTHDSIGL 512
Query: 552 GEDGPTHQPIEHLASFRAMPNILMLRPADGNETAGAYKVAVANRKRPSILALSRQKLPHL 611
GEDGPTHQ +EH+AS R +PN+ + RPAD ETA A+ AVA+ + PS L SRQ L
Sbjct: 513 GEDGPTHQSVEHVASLRLIPNLDVWRPADTVETAVAWTYAVAH-QHPSCLIFSRQNLAFN 571
Query: 612 AGT--SIDGVEKGAYIISD-NSSGNKPDVILIGTGSXXXXXXXXXXXXRKGGKAVRVVSF 668
A T + VEKG Y++ D + +ILI TGS + G A RVVS
Sbjct: 572 ARTDAQLANVEKGGYVLRDWDEEIVARKIILIATGSEVELAMKAVEPLAQQGIAARVVSM 631
Query: 669 VSWELFDEQSDAYKESVLPAAVSARVSIEAGSTFGWEKIVGSKGKAIGIDRFGASAPAGK 728
S ++FD Q Y+E VLP V RV+IEAG T W K VG +G +GID FG SAPAG
Sbjct: 632 PSSDVFDRQDAEYRERVLPHGVR-RVAIEAGVTDFWRKYVGLEGGVVGIDTFGESAPAGV 690
Query: 729 IYKEFGITAEAVITAAKEV 747
++K FG T E VI AK V
Sbjct: 691 LFKHFGFTVEHVIETAKAV 709
>pdb|3UK1|A Chain A, Crystal Structure Of A Transketolase From Burkholderia
Thailandensis With An Oxidized Cysteinesulfonic Acid In
The Active Site
pdb|3UK1|B Chain B, Crystal Structure Of A Transketolase From Burkholderia
Thailandensis With An Oxidized Cysteinesulfonic Acid In
The Active Site
Length = 711
Score = 548 bits (1412), Expect = e-156, Method: Compositional matrix adjust.
Identities = 324/680 (47%), Positives = 406/680 (59%), Gaps = 19/680 (2%)
Query: 81 TSTDAALVEKSVNTIRFLAVDAVEKANSGHPGLPMGCAPMGHILYDEVMRYNPKNPYWFN 140
T++ A N IR LA+DAV++ANSGHPG+PMG A +G L+ +++NP NP+W +
Sbjct: 38 TTSSPASTTLMANAIRALAMDAVQQANSGHPGMPMGMAEIGVALWSRHLKHNPTNPHWAD 97
Query: 141 RDRFVLSAGHGCMLQYALLHLAGYDSVQEDDLKNFRQWGSKTPGHPENFETPGIEVTTGP 200
RDRFVLS GHG ML Y+LLHL GYD + ++LKNFRQ SKTPGHPE TPG+E TTGP
Sbjct: 98 RDRFVLSNGHGSMLLYSLLHLTGYD-LPIEELKNFRQLHSKTPGHPEYGITPGVETTTGP 156
Query: 201 LGQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGIANEASSLAGHLGL 260
LGQG+ANAVG+AL E LAA +N+ D +IVDH+TYV LGDG MEGI++EA SLAG L L
Sbjct: 157 LGQGLANAVGMALGEALLAAEFNRDDAKIVDHHTYVFLGDGXLMEGISHEACSLAGTLKL 216
Query: 261 GKLIAFYDDNHISIDGDTEIAFTENVDKRFEGLGWHVIWVKNGNTGYDDIRAAIKEAKAV 320
KLIA YDDN ISIDGD F ++ KRFE GW+VI NG+ A K +
Sbjct: 217 NKLIALYDDNGISIDGDVVNWFHDDTPKRFEAYGWNVIPNVNGHDVDAIDAAIAKAKR-- 274
Query: 321 TDKPTLIRVTTTIGFGSPNKANSYSVHGSALGAKEVDATRKNLGWPYEPFHVPEDVKKHW 380
+DKP+LI T IG G+ KA + VHG+ LGA E+ TR+ LGW + PF +P++V W
Sbjct: 275 SDKPSLICCKTRIGNGAATKAGGHDVHGAPLGADEIAKTREALGWTWAPFVIPQEVYAAW 334
Query: 381 SRHVAEGATLEAEWNXXXXXXXXXXXXXXXXXXSISSGQLP----AGWEKALPTYTPESP 436
A G E +WN +G LP A +
Sbjct: 335 DAKEA-GKRSEDDWNAAFAQYRAKYPAEAAEFERRMAGTLPADWAAKAAAIVAGANERGE 393
Query: 437 AEATRNLSQTCLNALAKTLPGLLGGSADLASSNMTLLKMFGDFQ--KDTPEER---NVRF 491
ATR SQ + LA LP LLGGSADL SN+T K + D P + ++ +
Sbjct: 394 TVATRKASQQTIEGLAAVLPELLGGSADLTGSNLTNWKASKAVRANADGPGVQWGNHINY 453
Query: 492 GVREHGMGAICNGIALHSPGLIPYCATFFVFTDYMRAAIRISALCEAGVIYVMTHDSIGL 551
GVRE GM A NG+ LH G P+ TF F+DY R A+R++AL + I+V THDSIGL
Sbjct: 454 GVREFGMSAAINGLVLHG-GYKPFGGTFLTFSDYSRNALRVAALMKVPSIFVFTHDSIGL 512
Query: 552 GEDGPTHQPIEHLASFRAMPNILMLRPADGNETAGAYKVAVANRKRPSILALSRQKLPHL 611
GEDGPTHQ +EH+AS R +PN+ + RPAD ETA A+ AVA+ + PS L SRQ L
Sbjct: 513 GEDGPTHQSVEHVASLRLIPNLDVWRPADTVETAVAWTYAVAH-QHPSCLIFSRQNLAFN 571
Query: 612 AGT--SIDGVEKGAYIISD-NSSGNKPDVILIGTGSXXXXXXXXXXXXRKGGKAVRVVSF 668
A T + VEKG Y++ D + +ILI TGS + G A RVVS
Sbjct: 572 ARTDAQLANVEKGGYVLRDWDEEIVARKIILIATGSEVELAMKAVEPLAQQGIAARVVSM 631
Query: 669 VSWELFDEQSDAYKESVLPAAVSARVSIEAGSTFGWEKIVGSKGKAIGIDRFGASAPAGK 728
S ++FD Q Y+E VLP V RV+IEAG T W K VG +G +GID FG SAPAG
Sbjct: 632 PSSDVFDRQDAEYRERVLPHGVR-RVAIEAGVTDFWRKYVGLEGGVVGIDTFGESAPAGV 690
Query: 729 IYKEFGITAEAVITAAKEVC 748
++K FG T E VI AK V
Sbjct: 691 LFKHFGFTVEHVIETAKAVL 710
>pdb|3RIM|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis
Transketolase (rv1449c)
pdb|3RIM|B Chain B, Crystal Structure Of Mycobacterium Tuberculosis
Transketolase (rv1449c)
pdb|3RIM|C Chain C, Crystal Structure Of Mycobacterium Tuberculosis
Transketolase (rv1449c)
pdb|3RIM|D Chain D, Crystal Structure Of Mycobacterium Tuberculosis
Transketolase (rv1449c)
Length = 700
Score = 533 bits (1372), Expect = e-151, Method: Compositional matrix adjust.
Identities = 296/664 (44%), Positives = 391/664 (58%), Gaps = 21/664 (3%)
Query: 91 SVNTIRFLAVDAVEKANSGHPGLPMGCAPMGHILYDEVMRYNPKNPYWFNRDRFVLSAGH 150
+V+TIR LA DAV+K +GHPG M AP+ + L+ MR++P + +W RDRFVLSAGH
Sbjct: 26 AVDTIRVLAADAVQKVGNGHPGTAMSLAPLAYTLFQRTMRHDPSDTHWLGRDRFVLSAGH 85
Query: 151 GCMLQYALLHLAGYDSVQEDDLKNFRQWGSKTPGHPENFETPGIEVTTGPLGQGMANAVG 210
+ Y L+L G+ ++ D+++ R WGSKTPGHPE TPG+E+TTGPLGQG+A+AVG
Sbjct: 86 SSLTLYIQLYLGGF-GLELSDIESLRTWGSKTPGHPEFRHTPGVEITTGPLGQGLASAVG 144
Query: 211 LALAEKHLAARYN---KPDNEIVDHYTYVILGDGCQMEGIANEASSLAGHLGLGKLIAFY 267
+A+A ++ ++ +P DHY YVI DG EG+ +EASSLA LG LI FY
Sbjct: 145 MAMASRYERGLFDPDAEPGASPFDHYIYVIASDGDIEEGVTSEASSLAAVQQLGNLIVFY 204
Query: 268 DDNHISIDGDTEIAFTENVDKRFEGLGWHVIWVKNGNTGYDDIRAAIKEAKAVTDKPTLI 327
D N ISI+ DT IA E+ R+ GWHV V+ G I AI A+AVTD+P+ I
Sbjct: 205 DRNQISIEDDTNIALCEDTAARYRAYGWHVQEVEGGENVVG-IEEAIANAQAVTDRPSFI 263
Query: 328 RVTTTIGFGSPNKANSYSVHGSALGAKEVDATRKNLGW-PYEPFHVPEDVKKHWSRHVAE 386
+ T IG+ +PN ++ HG+ALG EV A +K +G+ P + F V EDV H VA
Sbjct: 264 ALRTVIGYPAPNLMDTGKAHGAALGDDEVAAVKKIVGFDPDKTFQVREDVLTHTRGLVAR 323
Query: 387 GATLEAEWNXXXXXXXXXXXXXXXXXXSISSGQLPAGWEKALPTYTPESPAEATRNLSQT 446
G W + + +LP GW+ LP + P S A ATR S
Sbjct: 324 GKQAHERWQLEFDAWARREPERKALLDRLLAQKLPDGWDADLPHWEPGSKALATRAASGA 383
Query: 447 CLNALAKTLPGLLGGSADLASSNMTLLK---MFGDFQKDTPEE------RNVRFGVREHG 497
L+AL LP L GGSADLA SN T +K FG T E R + FGVREH
Sbjct: 384 VLSALGPKLPELWGGSADLAGSNNTTIKGADSFGPPSISTKEYTAHWYGRTLHFGVREHA 443
Query: 498 MGAICNGIALHSPGLIPYCATFFVFTDYMRAAIRISALCEAGVIYVMTHDSIGLGEDGPT 557
MGAI +GI LH P Y TF F+DYMR A+R++AL + IYV THDSIGLGEDGPT
Sbjct: 444 MGAILSGIVLHGPTRA-YGGTFLQFSDYMRPAVRLAALMDIDTIYVWTHDSIGLGEDGPT 502
Query: 558 HQPIEHLASFRAMPNILMLRPADGNETAGAYKVAVANRK--RPSILALSRQKLPHLAGTS 615
HQPIEHL++ RA+P + ++RPAD NETA A++ +A R P L L+RQ +P L GT
Sbjct: 503 HQPIEHLSALRAIPRLSVVRPADANETAYAWRTILARRNGSGPVGLILTRQGVPVLDGTD 562
Query: 616 IDGVEKGAYIISDN---SSGNKPDVILIGTGSXXXXXXXXXXXXRKGGKAVRVVSFVSWE 672
+GV +G Y++SD G +PDVILI TGS RVVS E
Sbjct: 563 AEGVARGGYVLSDAGGLQPGEEPDVILIATGSEVQLAVAAQTLLADNDILARVVSMPCLE 622
Query: 673 LFDEQSDAYKESVLPAAVSARVSIEAGSTFGWEKIVGSKGKAIGIDRFGASAPAGKIYKE 732
F+ Q Y+++VLP VSARV++EAG W ++VG G+ + I+ +G SA +++E
Sbjct: 623 WFEAQPYEYRDAVLPPTVSARVAVEAGVAQCWHQLVGDTGEIVSIEHYGESADHKTLFRE 682
Query: 733 FGIT 736
+G T
Sbjct: 683 YGFT 686
>pdb|3KOM|A Chain A, Crystal Structure Of Apo Transketolase From Francisella
Tularensis
pdb|3KOM|B Chain B, Crystal Structure Of Apo Transketolase From Francisella
Tularensis
Length = 663
Score = 516 bits (1329), Expect = e-146, Method: Compositional matrix adjust.
Identities = 302/659 (45%), Positives = 393/659 (59%), Gaps = 25/659 (3%)
Query: 93 NTIRFLAVDAVEKANSGHPGLPMGCAPMGHILYDEVMRYNPKNPYWFNRDRFVLSAGHGC 152
N IRFL++DA KA SGHPG P G A + +L+ + +++NP NP+W NRDRFVLS GHG
Sbjct: 11 NAIRFLSIDATLKAKSGHPGXPXGXADIATVLWTKFLKHNPNNPHWINRDRFVLSNGHGS 70
Query: 153 MLQYALLHLAGYDSVQEDDLKNFRQWGSKTPGHPENFETPGIEVTTGPLGQGMANAVGLA 212
L Y+LLHL GYD + +D+KNFRQ SKTPGHPE TPG+E TTGPLGQG+ANAVG A
Sbjct: 71 XLLYSLLHLTGYD-LSIEDIKNFRQLHSKTPGHPEYGYTPGVETTTGPLGQGVANAVGXA 129
Query: 213 LAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGIANEASSLAGHLGLGKLIAFYDDNHI 272
L EK L+ RYN PD +++DH+TYV LGDG EG+++EA SLAG LGL KL+AF+DDN+I
Sbjct: 130 LGEKLLSDRYNTPDLKVIDHHTYVFLGDGXLXEGVSHEACSLAGTLGLNKLVAFWDDNNI 189
Query: 273 SIDGDTEIAFTENVDKRFEGLGWHVIWVKNGNTGYDDIRAAIKEAKAVTDKPTLIRVTTT 332
SIDGDT+ F++N +RF GWHVI +G+ + I AI EA + KPTLI T
Sbjct: 190 SIDGDTKGWFSDNTPERFRAYGWHVIENVDGHD-FVAIEKAINEAHSQQQKPTLICCKTV 248
Query: 333 IGFGSPNKANSYSVHGSALGAKEVDATRKNLGWPYEPFHVPEDVKKHWSRHVAEGATLEA 392
IGFGSP KA + SVHGS L +E + K L W Y+ F +P+DV K+W +G LEA
Sbjct: 249 IGFGSPEKAGTASVHGSPLSDQERASAAKELNWDYQAFEIPQDVYKYWDAR-EKGQALEA 307
Query: 393 EWNXXXXXXXXXXXXXXXXXXSISSGQLPAGWEKALPTYTP---ESPAE-ATRNLSQTCL 448
W + S +LP G E A+ Y +P + ATR SQ L
Sbjct: 308 NWQ--GQRNLFKDSPKFDEFERVLSKELPVGLESAINDYIASQLSNPVKVATRKASQXVL 365
Query: 449 NALAKTLPGLLGGSADLASSNMTLLKMFGDFQKDTPEE--RNVRFGVREHGMGAICNGIA 506
L K P GGSADL SN T G + +E + +GVRE G AI NG++
Sbjct: 366 EVLCKNXPEXFGGSADLTGSNNT--NWSGSVWLNNTQEGANYLSYGVREFGXAAIXNGLS 423
Query: 507 LHSPGLIPYCATFFVFTDYMRAAIRISALCEAGVIYVMTHDSIGLGEDGPTHQPIEHLAS 566
L+ G+ PY TF VF+DY R AIR SAL + V++V +HDSIGLGEDGPTHQPIEH+ S
Sbjct: 424 LYG-GIKPYGGTFLVFSDYSRNAIRXSALXKQPVVHVXSHDSIGLGEDGPTHQPIEHVPS 482
Query: 567 FRAMPNILMLRPADGNETAGAYKVAVANRKRPSILALSRQKLPHLAGT--SIDGVEKGAY 624
R +PN+ + RPAD ET A+K AV ++ PS+ L+RQ L + T + + +G Y
Sbjct: 483 LRLIPNLSVWRPADTIETXIAWKEAVKSKDTPSVXVLTRQNLXPVVQTQHQVANIARGGY 542
Query: 625 IISDNSSGNKPD--VILIGTGSXXXXXXXXXXXXRKGGKAVRVVSFVSWELFDEQSDAYK 682
++ DN PD + ++ TGS K G + V S E+F Q+ YK
Sbjct: 543 LVKDN-----PDAKLTIVATGSEVELAVKVANEFEKKGIKLNVASIPCVEVFATQAHEYK 597
Query: 683 ESVLPAAVSARVSIEAGSTFGWEKIVGSKGKAI-GIDRFGASAPAGKIYKEFGITAEAV 740
++V+ + A V +E W K G + GI FG SAPA ++K FG T E +
Sbjct: 598 KTVIKDDIPA-VFVEXAQPDXWYKYXPKAGGEVKGIYSFGESAPAEDLFKRFGFTVENI 655
>pdb|3M7I|A Chain A, Crystal Structure Of Transketolase In Complex With
Thiamine Diphosphate, Ribose-5-Phosphate(Pyranose Form)
And Magnesium Ion
pdb|3M34|A Chain A, Crystal Structure Of Transketolase In Complex With Thiamin
D And Calcium Ion
pdb|3M6L|A Chain A, Crystal Structure Of Transketolase In Complex With
Thiamine Diphosphate, Ribose-5-Phosphate And Calcium Ion
Length = 635
Score = 437 bits (1124), Expect = e-122, Method: Compositional matrix adjust.
Identities = 267/663 (40%), Positives = 366/663 (55%), Gaps = 35/663 (5%)
Query: 81 TSTDAALVEKSVNTIRFLAVDAVEKANSGHPGLPMGCAPMGHILYDEVMRYNPKNPYWFN 140
+ + ++++ NT+RFL+ D V+KANSGHPG P+G A + +L +++NPKNP W N
Sbjct: 2 NAXNIQILQEQANTLRFLSADXVQKANSGHPGAPLGLADILSVLSYH-LKHNPKNPTWLN 60
Query: 141 RDRFVLSAGHGCMLQYALLHLAGYDSVQEDDLKNFRQWGSKTPGHPENFETPGIEVTTGP 200
RDR V S GH L Y+ LHL+GYD + +DLKNFRQ SKTPGHPE T G+E+ TGP
Sbjct: 61 RDRLVFSGGHASALLYSFLHLSGYD-LSLEDLKNFRQLHSKTPGHPE-ISTLGVEIATGP 118
Query: 201 LGQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGIANEASSLAGHLGL 260
LGQG+ANAVG A A K N ++++DH Y + GDG EGI+ EA SLAG L
Sbjct: 119 LGQGVANAVGFAXAAK---KAQNLLGSDLIDHKIYCLCGDGDLQEGISYEACSLAGLHKL 175
Query: 261 GKLIAFYDDNHISIDGDTEIAFTENVDKRFEGLGWHVIWVKNGNTGYDDIRAAIKEAKAV 320
I YD N+ISI+GD +AF ENV RFE G+ V+ + NG+ Y++I A+++AK
Sbjct: 176 DNFILIYDSNNISIEGDVGLAFNENVKXRFEAQGFEVLSI-NGHD-YEEINKALEQAKKS 233
Query: 321 TDKPTLIRVTTTIGFGSPNKANSYSVHGSALGAKEVDATRKNLGW-PYEPFHVPEDVKKH 379
T KP LI TTI G+ S+ HG+ LG + + ++ G+ P FH+P+ K
Sbjct: 234 T-KPCLIIAKTTIAKGAGELEGSHKSHGAPLGEEVIKKAKEQAGFDPNISFHIPQASKIR 292
Query: 380 WSRHVAEGATLEAEWNXXXXXXXXXXXXXXXXXXSISSGQLPAGWEKALPTYTPESPAEA 439
+ V G EA+W + P K L A
Sbjct: 293 FESAVELGDLEEAKWKDKLEKSAKKELLERLLNPDFNKIAYPDFKGKDL----------A 342
Query: 440 TRNLSQTCLNALAKTLPGLLGGSADLASSNMTLLKMFGDFQKDTPEERNVRFGVREHGMG 499
TR+ + LN LAK L G LGGSADL SN T L GDF E +N+ FG+REH
Sbjct: 343 TRDSNGEILNVLAKNLEGFLGGSADLGPSNKTELHSXGDF----VEGKNIHFGIREHAXA 398
Query: 500 AICNGIALHSPGLIPYCATFFVFTDYMRAAIRISALCEAGVIYVMTHDSIGLGEDGPTHQ 559
AI N A + +P+ ATFF+F++Y++ A RI+AL + ++ THDSIG+GEDGPTHQ
Sbjct: 399 AINNAFARYGI-FLPFSATFFIFSEYLKPAARIAALXKIKHFFIFTHDSIGVGEDGPTHQ 457
Query: 560 PIEHLASFRAMPNILMLRPADGNETAGAYKVAVANRKRPSILALSRQKLPHLAGTSIDGV 619
PIE L++FRA PN L RPADG E A+++A+ N PS LSRQKL L V
Sbjct: 458 PIEQLSTFRAXPNFLTFRPADGVENVKAWQIAL-NADIPSAFVLSRQKLKALNEPVFGDV 516
Query: 620 EKGAYIISDNSSGNKPDVILIGTGSXXXXXXXXXXXXRKGGKAVRVVSFVSWELFDEQSD 679
+ GAY++ ++ L+ +GS K G A VVS +ELF++Q
Sbjct: 517 KNGAYLLKESKEAK---FTLLASGSEVWLCLESANELEKQGFACNVVSXPCFELFEKQDK 573
Query: 680 AYKESVLPAAVSARVSIEAGSTFGWEKIVGSKGKAIGIDRFGASAPAGKIYKEFGITAEA 739
AY+E +L V + +EA + K K GI+ FG S +++ FG +
Sbjct: 574 AYQERLLKGEV---IGVEAAHSNELYKFC---HKVYGIESFGESGKDKDVFERFGFSVSK 627
Query: 740 VIT 742
++
Sbjct: 628 LVN 630
>pdb|3L84|A Chain A, High Resolution Crystal Structure Of Transketolase From
Campylobacter Jejuni Subsp. Jejuni Nctc 11168
Length = 632
Score = 436 bits (1122), Expect = e-122, Method: Compositional matrix adjust.
Identities = 267/657 (40%), Positives = 364/657 (55%), Gaps = 35/657 (5%)
Query: 87 LVEKSVNTIRFLAVDAVEKANSGHPGLPMGCAPMGHILYDEVMRYNPKNPYWFNRDRFVL 146
++++ NT+RFL+ D V+KANSGHPG P+G A + +L +++NPKNP W NRDR V
Sbjct: 5 ILQEQANTLRFLSADXVQKANSGHPGAPLGLADILSVLSYH-LKHNPKNPTWLNRDRLVF 63
Query: 147 SAGHGCMLQYALLHLAGYDSVQEDDLKNFRQWGSKTPGHPENFETPGIEVTTGPLGQGMA 206
S GH L Y+ LHL+GYD + +DLKNFRQ SKTPGHPE T G+E+ TGPLGQG+A
Sbjct: 64 SGGHASALLYSFLHLSGYD-LSLEDLKNFRQLHSKTPGHPE-ISTLGVEIATGPLGQGVA 121
Query: 207 NAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGIANEASSLAGHLGLGKLIAF 266
NAVG A A K N ++++DH Y + GDG EGI+ EA SLAG L I
Sbjct: 122 NAVGFAXAAK---KAQNLLGSDLIDHKIYCLCGDGDLQEGISYEACSLAGLHKLDNFILI 178
Query: 267 YDDNHISIDGDTEIAFTENVDKRFEGLGWHVIWVKNGNTGYDDIRAAIKEAKAVTDKPTL 326
YD N+ISI+GD +AF ENV RFE G+ V+ + NG+ Y++I A+++AK T KP L
Sbjct: 179 YDSNNISIEGDVGLAFNENVKXRFEAQGFEVLSI-NGHD-YEEINKALEQAKKST-KPCL 235
Query: 327 IRVTTTIGFGSPNKANSYSVHGSALGAKEVDATRKNLGW-PYEPFHVPEDVKKHWSRHVA 385
I TTI G+ S+ HG+ LG + + ++ G+ P FH+P+ K + V
Sbjct: 236 IIAKTTIAKGAGELEGSHKSHGAPLGEEVIKKAKEQAGFDPNISFHIPQASKIRFESAVE 295
Query: 386 EGATLEAEWNXXXXXXXXXXXXXXXXXXSISSGQLPAGWEKALPTYTPESPAEATRNLSQ 445
G EA+W + P K L ATR+ +
Sbjct: 296 LGDLEEAKWKDKLEKSAKKELLERLLNPDFNKIAYPDFKGKDL----------ATRDSNG 345
Query: 446 TCLNALAKTLPGLLGGSADLASSNMTLLKMFGDFQKDTPEERNVRFGVREHGMGAICNGI 505
LN LAK L G LGGSADL SN T L GDF E +N+ FG+REH AI N
Sbjct: 346 EILNVLAKNLEGFLGGSADLGPSNKTELHSXGDF----VEGKNIHFGIREHAXAAINNAF 401
Query: 506 ALHSPGLIPYCATFFVFTDYMRAAIRISALCEAGVIYVMTHDSIGLGEDGPTHQPIEHLA 565
A + +P+ ATFF+F++Y++ A RI+AL + ++ THDSIG+GEDGPTHQPIE L+
Sbjct: 402 ARYGI-FLPFSATFFIFSEYLKPAARIAALXKIKHFFIFTHDSIGVGEDGPTHQPIEQLS 460
Query: 566 SFRAMPNILMLRPADGNETAGAYKVAVANRKRPSILALSRQKLPHLAGTSIDGVEKGAYI 625
+FRA PN L RPADG E A+++A+ N PS LSRQKL L V+ GAY+
Sbjct: 461 TFRAXPNFLTFRPADGVENVKAWQIAL-NADIPSAFVLSRQKLKALNEPVFGDVKNGAYL 519
Query: 626 ISDNSSGNKPDVILIGTGSXXXXXXXXXXXXRKGGKAVRVVSFVSWELFDEQSDAYKESV 685
+ ++ L+ +GS K G A VVS +ELF++Q AY+E +
Sbjct: 520 LKESKEAK---FTLLASGSEVWLCLESANELEKQGFACNVVSXPCFELFEKQDKAYQERL 576
Query: 686 LPAAVSARVSIEAGSTFGWEKIVGSKGKAIGIDRFGASAPAGKIYKEFGITAEAVIT 742
L V + +EA + K K GI+ FG S +++ FG + ++
Sbjct: 577 LKGEV---IGVEAAHSNELYKFC---HKVYGIESFGESGKDKDVFERFGFSVSKLVN 627
>pdb|3MOS|A Chain A, The Structure Of Human Transketolase
Length = 616
Score = 151 bits (381), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 166/675 (24%), Positives = 274/675 (40%), Gaps = 89/675 (13%)
Query: 88 VEKSVNTIRFLAVDAVEKANSGHPGLPMGCAPMGHILYDEVMRYNPKNPYWFNRDRFVLS 147
++ + N +R ++ A A SGHP A + +L+ MRY ++P + DRFVLS
Sbjct: 13 LKDTANRLRISSIQATTAAGSGHPTSCCSAAEIMAVLFFHTMRYKSQDPRNPHNDRFVLS 72
Query: 148 AGHGCMLQYALLHLAGYDSVQEDDLKNFRQWGSKTPGHPENFETPGIEVTTGPLGQGMAN 207
GH + YA+ AG+ + E +L N R+ S GHP + +V TG LGQG+
Sbjct: 73 KGHAAPILYAVWAEAGF--LAEAELLNLRKISSDLDGHPVP-KQAFTDVATGSLGQGLGA 129
Query: 208 AVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGIANEASSLAGHLGLGKLIAFY 267
A G+A K+ + + Y +LGDG EG EA + A L L+A
Sbjct: 130 ACGMAYTGKYF---------DKASYRVYCLLGDGELSEGSVWEAMAFASIYKLDNLVAIL 180
Query: 268 DDNHISIDGDTEIAFTENV-DKRFEGLGWHVIWVKNGNTGYDDIRAAIKEAKAVTDKPTL 326
D N + + ++ KR E GWH I V +G++ +++ A +AK +PT
Sbjct: 181 DINRLGQSDPAPLQHQMDIYQKRCEAFGWHAIIV-DGHS-VEELCKAFGQAK---HQPTA 235
Query: 327 IRVTTTIGFGSPNKANSYSVHGSALGAKEVDATRKNLGWPYEPFHVPEDVKKHWSRHVAE 386
I T G G + S HG L P ++ E + + +
Sbjct: 236 IIAKTFKGRGITGVEDKESWHGKPL-----------------PKNMAEQIIQEIYSQIQS 278
Query: 387 GATLEAEWNXXXXXXXXXXXXXXXXXXSISSGQLPAGWEKALPTYTPESPAEATRNLSQT 446
+ A I++ ++P +LP+Y ATR
Sbjct: 279 KKKILA-----------TPPQEDAPSVDIANIRMP-----SLPSYKVGDKI-ATRKAYGQ 321
Query: 447 CLNALAKTLPGLLGGSADLASSNMTLLKMFGDFQKDTPEERNVRFGVREHGMGAICNGIA 506
L L ++ D +S + + F+K+ P +R + + E M +I G A
Sbjct: 322 ALAKLGHASDRIIALDGDTKNSTFSEI-----FKKEHP-DRFIECYIAEQNMVSIAVGCA 375
Query: 507 LHSPGLIPYCATFFVFTDYMRAAIRISALCEAGVIYVMTHDSIGLGEDGPTHQPIEHLAS 566
+ +P+C+TF F IR++A+ E+ + +H + +GEDGP+ +E LA
Sbjct: 376 TRN-RTVPFCSTFAAFFTRAFDQIRMAAISESNINLCGSHCGVSIGEDGPSQMALEDLAM 434
Query: 567 FRAMPNILMLRPADGNETAGAYKVAVANRKRPSILALSRQKLPHLAGTSIDGVEKGAYII 626
FR++P + P+DG T A ++A AN K + SR + + + D A ++
Sbjct: 435 FRSVPTSTVFYPSDGVATEKAVELA-ANTKGICFIRTSRPENAIIYNNNEDFQVGQAKVV 493
Query: 627 SDNSSGNKPDVILIGTGSXXXXXXXXXXXXRKGGKAVRVVSFVSWELFDEQ--------- 677
+ V +IG G +K +RV+ + + D +
Sbjct: 494 LKSKDDQ---VTVIGAGVTLHEALAAAELLKKEKINIRVLDPFTIKPLDRKLILDSARAT 550
Query: 678 -------SDAYKESVLPAAVSARVSIEAGSTFGWEKIVGSKGKAIGIDRFGASAPAGKIY 730
D Y E + AVS+ V E G T + ++R S ++
Sbjct: 551 KGRILTVEDHYYEGGIGEAVSSAVVGEPGITVTH----------LAVNRVPRSGKPAELL 600
Query: 731 KEFGITAEAVITAAK 745
K FGI +A+ A +
Sbjct: 601 KMFGIDRDAIAQAVR 615
>pdb|3OOY|A Chain A, Crystal Structure Of Human Transketolase (Tkt)
pdb|3OOY|B Chain B, Crystal Structure Of Human Transketolase (Tkt)
Length = 616
Score = 150 bits (380), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 166/675 (24%), Positives = 274/675 (40%), Gaps = 89/675 (13%)
Query: 88 VEKSVNTIRFLAVDAVEKANSGHPGLPMGCAPMGHILYDEVMRYNPKNPYWFNRDRFVLS 147
++ + N +R ++ A A SGHP A + +L+ MRY ++P + DRFVLS
Sbjct: 11 LKDTANRLRISSIQATTAAGSGHPTSCCSAAEIMAVLFFHTMRYKSQDPRNPHNDRFVLS 70
Query: 148 AGHGCMLQYALLHLAGYDSVQEDDLKNFRQWGSKTPGHPENFETPGIEVTTGPLGQGMAN 207
GH + YA+ AG+ + E +L N R+ S GHP + +V TG LGQG+
Sbjct: 71 KGHAAPILYAVWAEAGF--LAEAELLNLRKISSDLDGHPVP-KQAFTDVATGSLGQGLGA 127
Query: 208 AVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGIANEASSLAGHLGLGKLIAFY 267
A G+A K+ + + Y +LGDG EG EA + A L L+A
Sbjct: 128 ACGMAYTGKYF---------DKASYRVYCLLGDGELSEGSVWEAMAFASIYKLDNLVAIL 178
Query: 268 DDNHISIDGDTEIAFTENV-DKRFEGLGWHVIWVKNGNTGYDDIRAAIKEAKAVTDKPTL 326
D N + + ++ KR E GWH I V +G++ +++ A +AK +PT
Sbjct: 179 DINRLGQSDPAPLQHQMDIYQKRCEAFGWHAIIV-DGHS-VEELCKAFGQAK---HQPTA 233
Query: 327 IRVTTTIGFGSPNKANSYSVHGSALGAKEVDATRKNLGWPYEPFHVPEDVKKHWSRHVAE 386
I T G G + S HG L P ++ E + + +
Sbjct: 234 IIAKTFKGRGITGVEDKESWHGKPL-----------------PKNMAEQIIQEIYSQIQS 276
Query: 387 GATLEAEWNXXXXXXXXXXXXXXXXXXSISSGQLPAGWEKALPTYTPESPAEATRNLSQT 446
+ A I++ ++P +LP+Y ATR
Sbjct: 277 KKKILA-----------TPPQEDAPSVDIANIRMP-----SLPSYKVGDKI-ATRKAYGQ 319
Query: 447 CLNALAKTLPGLLGGSADLASSNMTLLKMFGDFQKDTPEERNVRFGVREHGMGAICNGIA 506
L L ++ D +S + + F+K+ P +R + + E M +I G A
Sbjct: 320 ALAKLGHASDRIIALDGDTKNSTFSEI-----FKKEHP-DRFIECYIAEQNMVSIAVGCA 373
Query: 507 LHSPGLIPYCATFFVFTDYMRAAIRISALCEAGVIYVMTHDSIGLGEDGPTHQPIEHLAS 566
+ +P+C+TF F IR++A+ E+ + +H + +GEDGP+ +E LA
Sbjct: 374 TRN-RTVPFCSTFAAFFTRAFDQIRMAAISESNINLCGSHCGVSIGEDGPSQMALEDLAM 432
Query: 567 FRAMPNILMLRPADGNETAGAYKVAVANRKRPSILALSRQKLPHLAGTSIDGVEKGAYII 626
FR++P + P+DG T A ++A AN K + SR + + + D A ++
Sbjct: 433 FRSVPTSTVFYPSDGVATEKAVELA-ANTKGICFIRTSRPENAIIYNNNEDFQVGQAKVV 491
Query: 627 SDNSSGNKPDVILIGTGSXXXXXXXXXXXXRKGGKAVRVVSFVSWELFDEQ--------- 677
+ V +IG G +K +RV+ + + D +
Sbjct: 492 LKSKDDQ---VTVIGAGVTLHEALAAAELLKKEKINIRVLDPFTIKPLDRKLILDSARAT 548
Query: 678 -------SDAYKESVLPAAVSARVSIEAGSTFGWEKIVGSKGKAIGIDRFGASAPAGKIY 730
D Y E + AVS+ V E G T + ++R S ++
Sbjct: 549 KGRILTVEDHYYEGGIGEAVSSAVVGEPGITVTH----------LAVNRVPRSGKPAELL 598
Query: 731 KEFGITAEAVITAAK 745
K FGI +A+ A +
Sbjct: 599 KMFGIDRDAIAQAVR 613
>pdb|2O1X|A Chain A, 1-deoxy-d-xylulose 5-phosphate Synthase (dxs) From
Deinococcus Radiodurans
pdb|2O1X|B Chain B, 1-deoxy-d-xylulose 5-phosphate Synthase (dxs) From
Deinococcus Radiodurans
pdb|2O1X|C Chain C, 1-deoxy-d-xylulose 5-phosphate Synthase (dxs) From
Deinococcus Radiodurans
pdb|2O1X|D Chain D, 1-deoxy-d-xylulose 5-phosphate Synthase (dxs) From
Deinococcus Radiodurans
Length = 629
Score = 38.1 bits (87), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 36/134 (26%), Positives = 60/134 (44%), Gaps = 19/134 (14%)
Query: 141 RDRFVLSAGHGCMLQYALLHLAGYDSVQEDDLKNFRQWGSKTPGHPENFETPGIEVTTGP 200
RDR + GH YA L G + D + + ++ G + G + E+ +T G
Sbjct: 73 RDRILFDVGHQA---YAHKILTG----RRDQMADIKKEGGIS-GFTKVSESEHDAITVGH 124
Query: 201 LGQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGIANEASSLAGHLGL 260
+ NA+G+ALA D + D + ++GDG G+A A + G +G
Sbjct: 125 ASTSLTNALGMALAR----------DAQGKDFHVAAVIGDGSLTGGMALAALNTIGDMGR 174
Query: 261 GKLIAFYDDNHISI 274
K++ +DN +SI
Sbjct: 175 -KMLIVLNDNEMSI 187
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 31/117 (26%), Positives = 50/117 (42%), Gaps = 9/117 (7%)
Query: 478 DFQKDTPEERNVRFGVREHGMGAICNGIALHSPGLIPYCATFFVFTDYMRAAIRI---SA 534
+F + P R + G+ E G+AL G+ P A + F RA ++ A
Sbjct: 357 EFSRVHPH-RYLDVGIAEEVAVTTAAGMALQ--GMRPVVAIYSTF--LQRAYDQVLHDVA 411
Query: 535 LCEAGVIYVMTHDSIGLGEDGPTHQPIEHLASFRAMPNILMLRPADGNETAGAYKVA 591
+ V + + I +G DG TH + L+ R++P + + P D E G K A
Sbjct: 412 IEHLNVTFCIDRAGI-VGADGATHNGVFDLSFLRSIPGVRIGLPKDAAELRGMLKYA 467
>pdb|1L8A|A Chain A, E. Coli Pyruvate Dehydrogenase
pdb|1L8A|B Chain B, E. Coli Pyruvate Dehydrogenase
pdb|1RP7|A Chain A, E. Coli Pyruvate Dehydrogenase Inhibitor Complex
pdb|1RP7|B Chain B, E. Coli Pyruvate Dehydrogenase Inhibitor Complex
pdb|2G25|A Chain A, E. Coli Pyruvate Dehydrogenase Phosphonolactylthiamin
Diphosphate Complex
pdb|2G25|B Chain B, E. Coli Pyruvate Dehydrogenase Phosphonolactylthiamin
Diphosphate Complex
pdb|2G28|A Chain A, E. Coli Pyruvate Dehydrogenase H407a Variant
Phosphonolactylthiamin Diphosphate Complex
pdb|2G28|B Chain B, E. Coli Pyruvate Dehydrogenase H407a Variant
Phosphonolactylthiamin Diphosphate Complex
pdb|2G67|A Chain A, E. Coli Pyruvate Dehydrogenase E1 Component (Apoenzyme)
pdb|2G67|B Chain B, E. Coli Pyruvate Dehydrogenase E1 Component (Apoenzyme)
pdb|2IEA|A Chain A, E. Coli Pyruvate Dehydrogenase
pdb|2IEA|B Chain B, E. Coli Pyruvate Dehydrogenase
Length = 886
Score = 36.2 bits (82), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 48/171 (28%), Positives = 71/171 (41%), Gaps = 20/171 (11%)
Query: 144 FVLSAGHGCMLQYALLHLAGYDSVQEDDLKNFRQW----GSKTPGHP----ENFETPGIE 195
V GH YA L G + ++ L NFRQ G + HP E ++ P +
Sbjct: 136 LVYFQGHISPGVYARAFLEG--RLTQEQLDNFRQEVHGNGLSSYPHPKLMPEFWQFPTVS 193
Query: 196 VTTGPLGQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGIANEASSLA 255
+ GP+G A+ A K+L R K ++ Y LGDG E + A ++A
Sbjct: 194 MGLGPIG-----AIYQAKFLKYLEHRGLKDTSK---QTVYAFLGDGEMDEPESKGAITIA 245
Query: 256 GHLGLGKLIAFYDDNHISIDGDT--EIAFTENVDKRFEGLGWHVIWVKNGN 304
L L+ + N +DG ++ FEG GW+VI V G+
Sbjct: 246 TREKLDNLVFVINCNLQRLDGPVTGNGKIINELEGIFEGAGWNVIKVMWGS 296
>pdb|3LPL|A Chain A, E. Coli Pyruvate Dehydrogenase Complex E1 Component E571a
Mutant
pdb|3LPL|B Chain B, E. Coli Pyruvate Dehydrogenase Complex E1 Component E571a
Mutant
Length = 886
Score = 36.2 bits (82), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 48/171 (28%), Positives = 71/171 (41%), Gaps = 20/171 (11%)
Query: 144 FVLSAGHGCMLQYALLHLAGYDSVQEDDLKNFRQW----GSKTPGHP----ENFETPGIE 195
V GH YA L G + ++ L NFRQ G + HP E ++ P +
Sbjct: 136 LVYFQGHISPGVYARAFLEG--RLTQEQLDNFRQEVHGNGLSSYPHPKLMPEFWQFPTVS 193
Query: 196 VTTGPLGQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGIANEASSLA 255
+ GP+G A+ A K+L R K ++ Y LGDG E + A ++A
Sbjct: 194 MGLGPIG-----AIYQAKFLKYLEHRGLKDTSK---QTVYAFLGDGEMDEPESKGAITIA 245
Query: 256 GHLGLGKLIAFYDDNHISIDGDT--EIAFTENVDKRFEGLGWHVIWVKNGN 304
L L+ + N +DG ++ FEG GW+VI V G+
Sbjct: 246 TREKLDNLVFVINCNLQRLDGPVTGNGKIINELEGIFEGAGWNVIKVMWGS 296
>pdb|2QTA|A Chain A, E. Coli Pyruvate Dehydrogenase E1 Component E401k Mutant
With Thiamin Diphosphate
pdb|2QTA|B Chain B, E. Coli Pyruvate Dehydrogenase E1 Component E401k Mutant
With Thiamin Diphosphate
pdb|2QTC|A Chain A, E. Coli Pyruvate Dehydrogenase E1 Component E401k Mutant
With Phosphonolactylthiamin Diphosphate
pdb|2QTC|B Chain B, E. Coli Pyruvate Dehydrogenase E1 Component E401k Mutant
With Phosphonolactylthiamin Diphosphate
Length = 886
Score = 36.2 bits (82), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 48/171 (28%), Positives = 71/171 (41%), Gaps = 20/171 (11%)
Query: 144 FVLSAGHGCMLQYALLHLAGYDSVQEDDLKNFRQW----GSKTPGHP----ENFETPGIE 195
V GH YA L G + ++ L NFRQ G + HP E ++ P +
Sbjct: 136 LVYFQGHISPGVYARAFLEG--RLTQEQLDNFRQEVHGNGLSSYPHPKLMPEFWQFPTVS 193
Query: 196 VTTGPLGQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGIANEASSLA 255
+ GP+G A+ A K+L R K ++ Y LGDG E + A ++A
Sbjct: 194 MGLGPIG-----AIYQAKFLKYLEHRGLKDTSK---QTVYAFLGDGEMDEPESKGAITIA 245
Query: 256 GHLGLGKLIAFYDDNHISIDGDT--EIAFTENVDKRFEGLGWHVIWVKNGN 304
L L+ + N +DG ++ FEG GW+VI V G+
Sbjct: 246 TREKLDNLVFVINCNLQRLDGPVTGNGKIINELEGIFEGAGWNVIKVMWGS 296
>pdb|3LQ2|A Chain A, E. Coli Pyruvate Dehydrogenase Complex E1 E235a Mutant
With Low Tdp Concentration
pdb|3LQ2|B Chain B, E. Coli Pyruvate Dehydrogenase Complex E1 E235a Mutant
With Low Tdp Concentration
pdb|3LQ4|A Chain A, E. Coli Pyruvate Dehydrogenase Complex E1 E235a Mutant
With High Tdp Concentration
pdb|3LQ4|B Chain B, E. Coli Pyruvate Dehydrogenase Complex E1 E235a Mutant
With High Tdp Concentration
Length = 886
Score = 33.5 bits (75), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 47/171 (27%), Positives = 70/171 (40%), Gaps = 20/171 (11%)
Query: 144 FVLSAGHGCMLQYALLHLAGYDSVQEDDLKNFRQW----GSKTPGHP----ENFETPGIE 195
V GH YA L G + ++ L NFRQ G + HP E ++ P +
Sbjct: 136 LVYFQGHISPGVYARAFLEG--RLTQEQLDNFRQEVHGNGLSSYPHPKLMPEFWQFPTVS 193
Query: 196 VTTGPLGQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGIANEASSLA 255
+ GP+G A+ A K+L R K ++ Y LGDG + A ++A
Sbjct: 194 MGLGPIG-----AIYQAKFLKYLEHRGLKDTSK---QTVYAFLGDGEMDAPESKGAITIA 245
Query: 256 GHLGLGKLIAFYDDNHISIDGDT--EIAFTENVDKRFEGLGWHVIWVKNGN 304
L L+ + N +DG ++ FEG GW+VI V G+
Sbjct: 246 TREKLDNLVFVINCNLQRLDGPVTGNGKIINELEGIFEGAGWNVIKVMWGS 296
>pdb|1QXP|A Chain A, Crystal Structure Of A Mu-Like Calpain
pdb|1QXP|B Chain B, Crystal Structure Of A Mu-Like Calpain
Length = 900
Score = 32.3 bits (72), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 29/58 (50%), Gaps = 2/58 (3%)
Query: 291 EGLGWHVIWVKNGNTGYDDIRAAIKEAKAVTDKPTLIRVTTTIGFGS--PNKANSYSV 346
EGLG H +K N Y+ +R EA A+ P V+ ++GF PN + +Y +
Sbjct: 16 EGLGSHERAIKYLNQDYETLRNECLEAGALFQDPAFPPVSHSLGFKELGPNSSKTYGI 73
>pdb|3B4U|A Chain A, Crystal Structure Of Dihydrodipicolinate Synthase From
Agrobacterium Tumefaciens Str. C58
pdb|3B4U|B Chain B, Crystal Structure Of Dihydrodipicolinate Synthase From
Agrobacterium Tumefaciens Str. C58
Length = 294
Score = 31.2 bits (69), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 35/74 (47%), Gaps = 4/74 (5%)
Query: 436 PAEATRNLSQTCLNALAKTLPGLLGGSADLA---SSNMTLLKMFGDFQKDTPEERNVRFG 492
P+ LS + L PG++ G D + S LLK GD +ER++ G
Sbjct: 142 PSVTMVTLSVELVGRLKAAFPGIVTGVKDSSGNWSHTERLLKEHGDLAILIGDERDLARG 201
Query: 493 VREHGMGAICNGIA 506
VR G GAI +G+A
Sbjct: 202 VRLGGQGAI-SGVA 214
>pdb|2EBF|X Chain X, Crystal Structures Reveal A Thiol-Protease Like Catalytic
Triad In The C-Terminal Region Of Pasteurella Multocida
Toxin
Length = 746
Score = 30.8 bits (68), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 13/39 (33%), Positives = 21/39 (53%)
Query: 686 LPAAVSARVSIEAGSTFGWEKIVGSKGKAIGIDRFGASA 724
LP S+RV IE W+ + +GK +G+ +F +A
Sbjct: 540 LPDVASSRVPIEVTELENWQVLTPPQGKILGLKQFKLTA 578
>pdb|2EBH|X Chain X, Crystal Structures Reveal A Thiol-Protease Like Catalytic
Triad In The C-Terminal Region Of Pasteurella Multocida
Toxin
Length = 746
Score = 30.8 bits (68), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 13/39 (33%), Positives = 21/39 (53%)
Query: 686 LPAAVSARVSIEAGSTFGWEKIVGSKGKAIGIDRFGASA 724
LP S+RV IE W+ + +GK +G+ +F +A
Sbjct: 540 LPDVASSRVPIEVTELENWQVLTPPQGKILGLKQFKLTA 578
>pdb|2EC5|A Chain A, Crystal Structures Reveal A Thiol-Protease Like Catalytic
Triad In The C-Terminal Region Of Pasteurella Multocida
Toxin
pdb|2EC5|B Chain B, Crystal Structures Reveal A Thiol-Protease Like Catalytic
Triad In The C-Terminal Region Of Pasteurella Multocida
Toxin
Length = 746
Score = 30.8 bits (68), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 13/39 (33%), Positives = 21/39 (53%)
Query: 686 LPAAVSARVSIEAGSTFGWEKIVGSKGKAIGIDRFGASA 724
LP S+RV IE W+ + +GK +G+ +F +A
Sbjct: 540 LPDVASSRVPIEVTELENWQVLTPPQGKILGLKQFKLTA 578
>pdb|3G8D|A Chain A, Crystal Structure Of The Biotin Carboxylase Subunit, E296a
Mutant, Of Acetyl-Coa Carboxylase From Escherichia Coli
pdb|3G8D|B Chain B, Crystal Structure Of The Biotin Carboxylase Subunit, E296a
Mutant, Of Acetyl-Coa Carboxylase From Escherichia Coli
Length = 444
Score = 30.4 bits (67), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 30/119 (25%), Positives = 46/119 (38%), Gaps = 10/119 (8%)
Query: 286 VDKRFEGLGWHVIWVKNGNTGYDDIRAAIKEAKAVTDKPT---LIRVTTTIGFGSPNKAN 342
VD + G G +NG + ++ I+ A VT+ T LI+ I G P
Sbjct: 265 VDIGYRGAGTFEFLFENGEFYFIEMNTRIQVAHPVTEMITGVDLIKEQLRIAAGQPLSIK 324
Query: 343 SYSVH--GSALGAKEVDATRKNLGWP----YEPFHVPEDVKKHWSRHVAEGATLEAEWN 395
VH G A+ + ++A N P FH P W H+ G T+ ++
Sbjct: 325 QEEVHVRGHAVECR-INAEDPNTFLPSPGKITRFHAPGGFGVRWESHIYAGYTVPPYYD 382
>pdb|2O1S|A Chain A, 1-Deoxy-D-Xylulose 5-Phosphate Synthase (Dxs) From
Escherichia Coli
pdb|2O1S|B Chain B, 1-Deoxy-D-Xylulose 5-Phosphate Synthase (Dxs) From
Escherichia Coli
pdb|2O1S|C Chain C, 1-Deoxy-D-Xylulose 5-Phosphate Synthase (Dxs) From
Escherichia Coli
pdb|2O1S|D Chain D, 1-Deoxy-D-Xylulose 5-Phosphate Synthase (Dxs) From
Escherichia Coli
Length = 621
Score = 30.4 bits (67), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 28/109 (25%), Positives = 48/109 (44%), Gaps = 9/109 (8%)
Query: 478 DFQKDTPEERNVRFGVREHGMGAICNGIALHSPGLIPYCATFFVFTDYMRAAIRI---SA 534
+F + P+ R + E G+A+ G P A + F RA ++ A
Sbjct: 354 EFSRKFPD-RYFDVAIAEQHAVTFAAGLAIG--GYKPIVAIYSTF--LQRAYDQVLHDVA 408
Query: 535 LCEAGVIYVMTHDSIGLGEDGPTHQPIEHLASFRAMPNILMLRPADGNE 583
+ + V++ + I +G DG THQ L+ R +P ++ P+D NE
Sbjct: 409 IQKLPVLFAIDRAGI-VGADGQTHQGAFDLSYLRCIPEXVIXTPSDENE 456
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.133 0.397
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 21,814,569
Number of Sequences: 62578
Number of extensions: 912057
Number of successful extensions: 2180
Number of sequences better than 100.0: 32
Number of HSP's better than 100.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 2023
Number of HSP's gapped (non-prelim): 45
length of query: 748
length of database: 14,973,337
effective HSP length: 106
effective length of query: 642
effective length of database: 8,340,069
effective search space: 5354324298
effective search space used: 5354324298
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.8 bits)