BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 004496
(748 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1B4V|A Chain A, Cholesterol Oxidase From Streptomyces
pdb|1MXT|A Chain A, Atomic Resolution Structure Of Cholesterol Oxidase
(Streptomyces Sp. Sa-Coo)
pdb|1N1P|A Chain A, Atomic Resolution Structure Of Cholesterol Oxidase @ Ph
7.4 (Streptomyces Sp. Sa-Coo)
pdb|1N4U|A Chain A, Cholesterol Oxidase From Streptomyces @ Ph 4.5
(Streptomyces Sp. Sa- Coo)
pdb|1N4V|A Chain A, Atomic Resolution Structure Of Cholesterol Oxidase @ph 5.8
(Streptomyces Sp. Sa-Coo)
pdb|1N4W|A Chain A, Atomic Resolution Structure Of Cholesterol Oxidase @ Ph
7.3 (Streptomyces Sp. Sa-Coo)
pdb|2GEW|A Chain A, Atomic Resolution Structure Of Cholesterol Oxidase @ Ph
9.0 (Streptomyces Sp. Sa-Coo)
Length = 504
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 41/74 (55%), Gaps = 8/74 (10%)
Query: 673 FSAHQMGSCRMGATEEDGAVDENGESWEAEGLFVCDGSVLPSAIGINPMITIESTSYCIS 732
F H +G C +G A D+ G + L+V DGS++P ++G+NP +TI + +
Sbjct: 439 FCYHPLGGCVLGK-----ATDDYGRVAGYKNLYVTDGSLIPGSVGVNPFVTITALA---E 490
Query: 733 KKIADSLKKDIRST 746
+ + +K+D+ ++
Sbjct: 491 RNVERIIKQDVTAS 504
>pdb|1B8S|A Chain A, Cholesterol Oxidase From Streptomyces Glu361gln Mutant
Length = 504
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 41/74 (55%), Gaps = 8/74 (10%)
Query: 673 FSAHQMGSCRMGATEEDGAVDENGESWEAEGLFVCDGSVLPSAIGINPMITIESTSYCIS 732
F H +G C +G A D+ G + L+V DGS++P ++G+NP +TI + +
Sbjct: 439 FCYHPLGGCVLGK-----ATDDYGRVAGYKNLYVTDGSLIPGSVGVNPFVTITALA---E 490
Query: 733 KKIADSLKKDIRST 746
+ + +K+D+ ++
Sbjct: 491 RNVERIIKQDVTAS 504
>pdb|3CNJ|A Chain A, Cholesterol Oxidase From Streptomyces Sp. F359w Mutant
(0.95a)
Length = 499
Score = 44.3 bits (103), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 39/71 (54%), Gaps = 8/71 (11%)
Query: 673 FSAHQMGSCRMGATEEDGAVDENGESWEAEGLFVCDGSVLPSAIGINPMITIESTSYCIS 732
F H +G C +G A D+ G + L+V DGS++P ++G+NP +TI + +
Sbjct: 437 FCYHPLGGCVLGK-----ATDDYGRVAGYKNLYVTDGSLIPGSVGVNPFVTITALA---E 488
Query: 733 KKIADSLKKDI 743
+ + +K+D+
Sbjct: 489 RNVERIIKQDV 499
>pdb|2JBV|A Chain A, Crystal Structure Of Choline Oxidase Reveals Insights Into
The Catalytic Mechanism
pdb|2JBV|B Chain B, Crystal Structure Of Choline Oxidase Reveals Insights Into
The Catalytic Mechanism
Length = 546
Score = 43.1 bits (100), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 40/138 (28%), Positives = 64/138 (46%), Gaps = 24/138 (17%)
Query: 605 NDKENLKTGLRQALRILI-AAGAEEVGTYRSDGHRIRCKGIKEEDLEEFIGSIEVVGGMA 663
+D + G+R+A I A AE G S G + +E+L+++I
Sbjct: 412 HDMRVMVAGIRKAREIAAQPAMAEWTGRELSPG----VEAQTDEELQDYI---------- 457
Query: 664 SRGEHWSVYFSAHQMGSCRMGATEED-GAVDENGESWEAEGLFVCDGSVLPSAIGINPMI 722
R H +VY H +G+ RMGA E++ +D GL V D SV+P + +NP I
Sbjct: 458 -RKTHNTVY---HPVGTVRMGAVEDEMSPLDPELRVKGVTGLRVADASVMPEHVTVNPNI 513
Query: 723 TIESTSYCISKKIADSLK 740
T+ I ++ AD ++
Sbjct: 514 TV----MMIGERCADLIR 527
>pdb|3NNE|A Chain A, Crystal Structure Of Choline Oxidase S101a Mutant
pdb|3NNE|B Chain B, Crystal Structure Of Choline Oxidase S101a Mutant
pdb|3NNE|C Chain C, Crystal Structure Of Choline Oxidase S101a Mutant
pdb|3NNE|D Chain D, Crystal Structure Of Choline Oxidase S101a Mutant
pdb|3NNE|E Chain E, Crystal Structure Of Choline Oxidase S101a Mutant
pdb|3NNE|F Chain F, Crystal Structure Of Choline Oxidase S101a Mutant
pdb|3NNE|G Chain G, Crystal Structure Of Choline Oxidase S101a Mutant
pdb|3NNE|H Chain H, Crystal Structure Of Choline Oxidase S101a Mutant
Length = 546
Score = 43.1 bits (100), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 40/138 (28%), Positives = 64/138 (46%), Gaps = 24/138 (17%)
Query: 605 NDKENLKTGLRQALRILI-AAGAEEVGTYRSDGHRIRCKGIKEEDLEEFIGSIEVVGGMA 663
+D + G+R+A I A AE G S G + +E+L+++I
Sbjct: 412 HDMRVMVAGIRKAREIAAQPAMAEWTGRELSPG----VEAQTDEELQDYI---------- 457
Query: 664 SRGEHWSVYFSAHQMGSCRMGATEED-GAVDENGESWEAEGLFVCDGSVLPSAIGINPMI 722
R H +VY H +G+ RMGA E++ +D GL V D SV+P + +NP I
Sbjct: 458 -RKTHNTVY---HPVGTVRMGAVEDEMSPLDPELRVKGVTGLRVADASVMPEHVTVNPNI 513
Query: 723 TIESTSYCISKKIADSLK 740
T+ I ++ AD ++
Sbjct: 514 TV----MMIGERCADLIR 527
>pdb|3GYI|A Chain A, Cholesterol Oxidase From Streptomyces Sp. N485d Mutant
(1.0a)
Length = 504
Score = 42.7 bits (99), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 41/74 (55%), Gaps = 8/74 (10%)
Query: 673 FSAHQMGSCRMGATEEDGAVDENGESWEAEGLFVCDGSVLPSAIGINPMITIESTSYCIS 732
F H +G C +G A D+ G + L+V DGS++P ++G++P +TI + +
Sbjct: 439 FCYHPLGGCVLGK-----ATDDYGRVAGYKNLYVTDGSLIPGSVGVDPFVTITALA---E 490
Query: 733 KKIADSLKKDIRST 746
+ + +K+D+ ++
Sbjct: 491 RNVERIIKQDVTAS 504
>pdb|1COY|A Chain A, Crystal Structure Of Cholesterol Oxidase Complexed With A
Steroid Substrate. Implications For Fad Dependent
Alcohol Oxidases
pdb|3COX|A Chain A, Crystal Structure Of Cholesterol Oxidase Complexed With A
Steroid Substrate. Implications For Fad Dependent
Alcohol Oxidases
Length = 507
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 31/58 (53%), Gaps = 5/58 (8%)
Query: 669 WSVYFSAHQMGSCRMGATEEDGAVDENGESWEAEGLFVCDGSVLPSAIGINPMITIES 726
W F+ H +G + + A D G E GL+V DGS++P +G+NP +TI +
Sbjct: 440 WGDDFTYHPLGGVLL-----NKATDNFGRLPEYPGLYVVDGSLVPGNVGVNPFVTITA 492
>pdb|1CBO|A Chain A, Cholesterol Oxidase From Streptomyces His447asn Mutant
Length = 504
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 41/74 (55%), Gaps = 8/74 (10%)
Query: 673 FSAHQMGSCRMGATEEDGAVDENGESWEAEGLFVCDGSVLPSAIGINPMITIESTSYCIS 732
F + +G C +G A D+ G + L+V DGS++P ++G+NP +TI + +
Sbjct: 439 FCYNPLGGCVLGK-----ATDDYGRVAGYKNLYVTDGSLIPGSVGVNPFVTITALA---E 490
Query: 733 KKIADSLKKDIRST 746
+ + +K+D+ ++
Sbjct: 491 RNVERIIKQDVTAS 504
>pdb|1CC2|A Chain A, Cholesterol Oxidase From Streptomyces His447gln Mutant
Length = 504
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 40/74 (54%), Gaps = 8/74 (10%)
Query: 673 FSAHQMGSCRMGATEEDGAVDENGESWEAEGLFVCDGSVLPSAIGINPMITIESTSYCIS 732
F +G C +G A D+ G + L+V DGS++P ++G+NP +TI + +
Sbjct: 439 FCYQPLGGCVLGK-----ATDDYGRVAGYKNLYVTDGSLIPGSVGVNPFVTITALA---E 490
Query: 733 KKIADSLKKDIRST 746
+ + +K+D+ ++
Sbjct: 491 RNVERIIKQDVTAS 504
>pdb|3B6D|A Chain A, Crystal Structure Of Streptomyces Cholesterol Oxidase
H447qE361Q Mutant (1.2a)
Length = 504
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 40/74 (54%), Gaps = 8/74 (10%)
Query: 673 FSAHQMGSCRMGATEEDGAVDENGESWEAEGLFVCDGSVLPSAIGINPMITIESTSYCIS 732
F +G C +G A D+ G + L+V DGS++P ++G+NP +TI + +
Sbjct: 439 FCYQPLGGCVLGK-----ATDDYGRVAGYKNLYVTDGSLIPGSVGVNPFVTITALA---E 490
Query: 733 KKIADSLKKDIRST 746
+ + +K+D+ ++
Sbjct: 491 RNVERIIKQDVTAS 504
>pdb|3B3R|A Chain A, Crystal Structure Of Streptomyces Cholesterol Oxidase
H447qE361Q Mutant Bound To Glycerol (0.98a)
Length = 506
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 40/74 (54%), Gaps = 8/74 (10%)
Query: 673 FSAHQMGSCRMGATEEDGAVDENGESWEAEGLFVCDGSVLPSAIGINPMITIESTSYCIS 732
F +G C +G A D+ G + L+V DGS++P ++G+NP +TI + +
Sbjct: 441 FCYQPLGGCVLGK-----ATDDYGRVAGYKNLYVTDGSLIPGSVGVNPFVTITALA---E 492
Query: 733 KKIADSLKKDIRST 746
+ + +K+D+ ++
Sbjct: 493 RNVERIIKQDVTAS 506
>pdb|3LJP|A Chain A, Crystal Structure Of Choline Oxidase V464a Mutant
pdb|3LJP|B Chain B, Crystal Structure Of Choline Oxidase V464a Mutant
Length = 546
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 39/138 (28%), Positives = 63/138 (45%), Gaps = 24/138 (17%)
Query: 605 NDKENLKTGLRQALRILI-AAGAEEVGTYRSDGHRIRCKGIKEEDLEEFIGSIEVVGGMA 663
+D + G+R+A I A AE G S G + +E+L+++I
Sbjct: 412 HDMRVMVAGIRKAREIAAQPAMAEWTGRELSPG----VEAQTDEELQDYI---------- 457
Query: 664 SRGEHWSVYFSAHQMGSCRMGATEED-GAVDENGESWEAEGLFVCDGSVLPSAIGINPMI 722
R H + Y H +G+ RMGA E++ +D GL V D SV+P + +NP I
Sbjct: 458 -RKTHNTAY---HPVGTVRMGAVEDEMSPLDPELRVKGVTGLRVADASVMPEHVTVNPNI 513
Query: 723 TIESTSYCISKKIADSLK 740
T+ I ++ AD ++
Sbjct: 514 TV----MMIGERCADLIR 527
>pdb|1CF3|A Chain A, Glucose Oxidase From Apergillus Niger
pdb|1GAL|A Chain A, Crystal Structure Of Glucose Oxidase From Aspergillus
Niger: Refined At 2.3 Angstroms Resolution
pdb|3QVP|A Chain A, Crystal Structure Of Glucose Oxidase For Space Group C2221
At 1.2 A Resolution
pdb|3QVR|A Chain A, Crystal Structure Of Glucose Oxidase For Space Group P3121
At 1.3 A Resolution
Length = 583
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 37/72 (51%), Gaps = 4/72 (5%)
Query: 676 HQMGSCRMGATEEDGAVDENGESWEAEGLFVCDGSVLPSAIGINPMITIESTSYCISKKI 735
H +G+C M E G VD + +GL V DGS+ P+ + + M Y ++ KI
Sbjct: 516 HGVGTCSMMPKEMGGVVDNAARVYGVQGLRVIDGSIPPTQMSSHVMTVF----YAMALKI 571
Query: 736 ADSLKKDIRSTE 747
+D++ +D S +
Sbjct: 572 SDAILEDYASMQ 583
>pdb|1IJH|A Chain A, Cholesterol Oxidase From Streptomyces Asn485leu Mutant
pdb|3GYJ|A Chain A, Cholesterol Oxidase From Streptomyces Sp. N485l Mutant
(0.92a)
Length = 504
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 40/74 (54%), Gaps = 8/74 (10%)
Query: 673 FSAHQMGSCRMGATEEDGAVDENGESWEAEGLFVCDGSVLPSAIGINPMITIESTSYCIS 732
F H +G C +G A D+ G + L+V DGS++P ++G+ P +TI + +
Sbjct: 439 FCYHPLGGCVLGK-----ATDDYGRVAGYKNLYVTDGSLIPGSVGVLPFVTITALA---E 490
Query: 733 KKIADSLKKDIRST 746
+ + +K+D+ ++
Sbjct: 491 RNVERIIKQDVTAS 504
>pdb|3T37|A Chain A, Crystal Structure Of Pyridoxine 4-Oxidase From Mesorbium
Loti
Length = 526
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 85/331 (25%), Positives = 127/331 (38%), Gaps = 55/331 (16%)
Query: 404 RTGDKKGTDVTWLVDAVDN--GAVILAGFKAEKFILVDNKDSIRSKKCLGVTATALNKNV 461
R G + WL AV IL G + + L N+ +RS + +G +A
Sbjct: 204 RDGRRVTAADAWLTKAVRGRKNLTILTGSRVRRLKLEGNQ--VRSLEVVGRQGSA----- 256
Query: 462 TRKLQIKAKATISACGSLLTPPLMISSGLENPNIGTNLHLHPVLLAWGY-----IPDHVS 516
++ A + G+L +P L++ SG IG H VL A G +PD
Sbjct: 257 ----EVFADQIVLCAGALESPALLMRSG-----IGP----HDVLDAAGVGCLIDMPDIGR 303
Query: 517 ELKGKTFEGGIITSIHKVVSEDSKVQAIIESPAMGPASFAAS-----------FPWISGR 565
L+ G + + K V S++Q M SF A+ P +S
Sbjct: 304 NLQDHLLGAGNLYAARKPVPP-SRLQHSESMAYMRADSFTAAGQPEIVVGCGVAPIVS-- 360
Query: 566 ELKDRMLRYGRIAQLFALVRDQGSGEVKVEG-KIKYRLSKNDKENLKTGL-RQALRILIA 623
E + LF + G V++ G ++ RL D L+TG R+ R +
Sbjct: 361 ESFPAPAAGSAYSLLFGITHPTSRGSVRISGPELGDRLII-DPAYLQTGRDRERFRRALE 419
Query: 624 AGAEEVGTYRSDGHRIRCKGIKEEDLEEFIGSIEVVGGMASRGEHWSVYFSAHQMGSCRM 683
A R+ GHR G +E +L G+ M SV H G+CRM
Sbjct: 420 AS-------RTIGHRDELAGWREREL--LPGTPNSAAEMDDFIAR-SVITHHHPCGTCRM 469
Query: 684 GATEEDGAVDENGESWEAEGLFVCDGSVLPS 714
G + D VD N + LFV D S++P+
Sbjct: 470 G-KDPDAVVDANLRLKALDNLFVVDASIMPN 499
>pdb|1GPE|A Chain A, Glucose Oxidase From Penicillium Amagasakiense
pdb|1GPE|B Chain B, Glucose Oxidase From Penicillium Amagasakiense
Length = 587
Score = 39.7 bits (91), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 35/67 (52%), Gaps = 4/67 (5%)
Query: 676 HQMGSCRMGATEEDGAVDENGESWEAEGLFVCDGSVLPSAIGINPMITIESTSYCISKKI 735
H + SC M + E G VD + + +GL V DGS+ P+ + + M Y ++ K+
Sbjct: 520 HAVSSCSMMSRELGGVVDATAKVYGTQGLRVIDGSIPPTQVSSHVMTIF----YGMALKV 575
Query: 736 ADSLKKD 742
AD++ D
Sbjct: 576 ADAILDD 582
>pdb|1NAA|A Chain A, Cellobiose Dehydrogenase Flavoprotein Fragment In Complex
With Cellobionolactam
pdb|1NAA|B Chain B, Cellobiose Dehydrogenase Flavoprotein Fragment In Complex
With Cellobionolactam
Length = 541
Score = 33.1 bits (74), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 17/62 (27%), Positives = 30/62 (48%)
Query: 674 SAHQMGSCRMGATEEDGAVDENGESWEAEGLFVCDGSVLPSAIGINPMITIESTSYCISK 733
S H + S +G++ + VD N + + LF+ D ++P NP T+ S + +
Sbjct: 473 SNHWVSSTTIGSSPQSAVVDSNVKVFGTNNLFIVDAGIIPHLPTGNPQGTLMSAAEQAAA 532
Query: 734 KI 735
KI
Sbjct: 533 KI 534
>pdb|1KDG|A Chain A, Crystal Structure Of The Flavin Domain Of Cellobiose
Dehydrogenase
pdb|1KDG|B Chain B, Crystal Structure Of The Flavin Domain Of Cellobiose
Dehydrogenase
Length = 546
Score = 33.1 bits (74), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 17/62 (27%), Positives = 30/62 (48%)
Query: 674 SAHQMGSCRMGATEEDGAVDENGESWEAEGLFVCDGSVLPSAIGINPMITIESTSYCISK 733
S H + S +G++ + VD N + + LF+ D ++P NP T+ S + +
Sbjct: 478 SNHWVSSTTIGSSPQSAVVDSNVKVFGTNNLFIVDAGIIPHLPTGNPQGTLMSAAEQAAA 537
Query: 734 KI 735
KI
Sbjct: 538 KI 539
>pdb|3FIM|B Chain B, Crystal Structure Of Aryl-Alcohol-Oxidase From Pleurotus
Eryingii
Length = 566
Score = 31.2 bits (69), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 32/68 (47%), Gaps = 5/68 (7%)
Query: 676 HQMGSCRMGATEED-GAVDENGESWEAEGLFVCDGSVLPSAIGINPMITIESTSYCISKK 734
H +G+ M G VD + + +GL + DGS+LP A P + Y + K+
Sbjct: 502 HPVGTASMSPRGASWGVVDPDLKVKGVDGLRIVDGSILPFA----PNAHTQGPIYLVGKQ 557
Query: 735 IADSLKKD 742
AD +K D
Sbjct: 558 GADLIKAD 565
>pdb|1HYW|A Chain A, Solution Structure Of Bacteriophage Lambda Gpw
Length = 68
Score = 30.4 bits (67), Expect = 3.6, Method: Composition-based stats.
Identities = 13/40 (32%), Positives = 20/40 (50%)
Query: 626 AEEVGTYRSDGHRIRCKGIKEEDLEEFIGSIEVVGGMASR 665
+ V T + DG R+ DL+++I +EV GM R
Sbjct: 20 GKRVATVQKDGRRVEFTATSVSDLKKYIAELEVQTGMTQR 59
>pdb|2A6Y|A Chain A, Crystal Structure Of Emp47p Carbohydrate Recognition
Domain (Crd), Tetragonal Crystal Form
Length = 256
Score = 30.4 bits (67), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
Query: 679 GSCRMGATEEDGAVDENGESWEAEGLFVCDGSVLPSAI-GINPM 721
GS R+G T ++GAV+ N ES+E + +G + S I +N M
Sbjct: 198 GSYRIGVTAQNGAVNNNAESFEIFKMQFFNGVIEDSLIPNVNAM 241
>pdb|1II2|A Chain A, Crystal Structure Of Phosphoenolpyruvate Carboxykinase
(Pepck) From Trypanosoma Cruzi
pdb|1II2|B Chain B, Crystal Structure Of Phosphoenolpyruvate Carboxykinase
(Pepck) From Trypanosoma Cruzi
Length = 524
Score = 30.4 bits (67), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 13/51 (25%), Positives = 22/51 (43%)
Query: 670 SVYFSAHQMGSCRMGATEEDGAVDENGESWEAEGLFVCDGSVLPSAIGINP 720
+V+F G + A + ++ W G+F +G AIG+NP
Sbjct: 216 TVFFGLSGTGKTTLSADPHRNLIGDDEHVWTDRGVFNIEGGCYAKAIGLNP 266
>pdb|2L6Q|A Chain A, New High Resolution Nmr Structure Of Gpw (w Protein Of
Bacteriophage Lambda) At Neutral Ph
pdb|2L6R|A Chain A, High Resolution Nmr Structure Of Gpw (W Protein Of
Bacteriophage Lambda) At Acidic Ph
Length = 62
Score = 30.4 bits (67), Expect = 4.3, Method: Composition-based stats.
Identities = 13/40 (32%), Positives = 20/40 (50%)
Query: 626 AEEVGTYRSDGHRIRCKGIKEEDLEEFIGSIEVVGGMASR 665
+ V T + DG R+ DL+++I +EV GM R
Sbjct: 20 GKRVATVQKDGRRVEFTATSVSDLKKYIAELEVQTGMTQR 59
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.135 0.407
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 21,207,549
Number of Sequences: 62578
Number of extensions: 840902
Number of successful extensions: 1916
Number of sequences better than 100.0: 23
Number of HSP's better than 100.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 1897
Number of HSP's gapped (non-prelim): 24
length of query: 748
length of database: 14,973,337
effective HSP length: 106
effective length of query: 642
effective length of database: 8,340,069
effective search space: 5354324298
effective search space used: 5354324298
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)